BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020504
(325 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2UWC|A Chain A, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
pdb|2UWC|B Chain B, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
Length = 271
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 106/262 (40%), Positives = 153/262 (58%), Gaps = 19/262 (7%)
Query: 32 FDEGYSHLFGHDNLVVHTDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGV 91
FD+GY++L+G + V D S+ + LD +GSGF S + Y G+F A+IKL + YTAGV
Sbjct: 19 FDQGYTNLWGPQHQRV--DQGSLTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTAGV 76
Query: 92 VVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTS---IGREERYNLWFD 148
+ +FY+SN + HDEID EFLG I GK + +QTN++ GS IGRE R +LWFD
Sbjct: 77 ITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGRELRIHLWFD 136
Query: 149 PSDDFHQYSILWTDSQIMEF-------KRTASMGGDFPAKPMSLYATIWDGSDWATNGGK 201
P+ D+H Y+I WT S+I+ F + FP +PM +Y ++WD S WAT GK
Sbjct: 137 PTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPLRPMWVYGSVWDASSWATENGK 196
Query: 202 YRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTGVSPSQRIKMENFR 261
Y+ +Y+Y P+V ++ DF L C+ + +S C+ + VS +S Q ME +
Sbjct: 197 YKADYRYQPFVGKYEDFKLGSCTV----EAASSCN---PASVSPYGQLSQQQVAAMEWVQ 249
Query: 262 RKHMTYSYCYDQIRYKVPPFEC 283
+ +M Y+YC D R EC
Sbjct: 250 KNYMVYNYCDDPTRDHTLTPEC 271
>pdb|2UWA|A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|B Chain B, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|C Chain C, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
Length = 274
Score = 192 bits (488), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 105/262 (40%), Positives = 153/262 (58%), Gaps = 19/262 (7%)
Query: 32 FDEGYSHLFGHDNLVVHTDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGV 91
FD+GY++L+G + V D S+ + LD +GSGF S + Y G+F A+IKL + YTAGV
Sbjct: 22 FDQGYTNLWGPQHQRV--DQGSLTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTAGV 79
Query: 92 VVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTS---IGREERYNLWFD 148
+ +FY+SN + HDEID EFLG I GK + +QTN++ GS IGRE R +LWFD
Sbjct: 80 ITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGREMRIHLWFD 139
Query: 149 PSDDFHQYSILWTDSQIMEF-------KRTASMGGDFPAKPMSLYATIWDGSDWATNGGK 201
P+ D+H Y+I WT S+I+ F + FP +P+ +Y ++WD S WAT GK
Sbjct: 140 PTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPLRPLWVYGSVWDASSWATENGK 199
Query: 202 YRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTGVSPSQRIKMENFR 261
Y+ +Y+Y P+V ++ DF L C+ + +S C+ + VS +S Q ME +
Sbjct: 200 YKADYRYQPFVGKYEDFKLGSCTV----EAASSCN---PASVSPYGQLSQQQVAAMEWVQ 252
Query: 262 RKHMTYSYCYDQIRYKVPPFEC 283
+ +M Y+YC D R EC
Sbjct: 253 KNYMVYNYCDDPTRDHTLTPEC 274
>pdb|2VH9|A Chain A, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
pdb|2VH9|B Chain B, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
Length = 290
Score = 189 bits (480), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 151/259 (58%), Gaps = 18/259 (6%)
Query: 32 FDEGYSHLFGHDNLVVHTDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGV 91
FD+GY++L+G + V D S+ + LD +GSGF S + Y G+F A+IKL + YTAGV
Sbjct: 43 FDQGYTNLWGPQHQRV--DQGSLTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTAGV 100
Query: 92 VVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSD 151
+ +FY+SN + HDEID EFLG I GK + +QTN++ GS RE R +LWFDP+
Sbjct: 101 ITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGD--REMRIHLWFDPTQ 158
Query: 152 DFHQYSILWTDSQIMEF-------KRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRV 204
D+H Y+I WT S+I+ F + FP +P+ +Y ++WD S WAT GKY+
Sbjct: 159 DYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPLRPLWVYGSVWDASSWATENGKYKA 218
Query: 205 NYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTGVSPSQRIKMENFRRKH 264
+Y+Y P+V ++ DF L C+ + +S C+ + VS +S Q ME ++ +
Sbjct: 219 DYRYQPFVGKYEDFKLGSCTV----EAASSCN---PASVSPYGQLSQQQVAAMEWVQKNY 271
Query: 265 MTYSYCYDQIRYKVPPFEC 283
M Y+YC D R EC
Sbjct: 272 MVYNYCDDPTRDHTLTPEC 290
>pdb|2UWB|A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
pdb|2UWB|B Chain B, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
Length = 267
Score = 189 bits (479), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 151/259 (58%), Gaps = 18/259 (6%)
Query: 32 FDEGYSHLFGHDNLVVHTDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGV 91
FD+GY++L+G + V D S+ + LD +GSGF S + Y G+F A+IKL + YTAGV
Sbjct: 20 FDQGYTNLWGPQHQRV--DQGSLTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTAGV 77
Query: 92 VVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSD 151
+ +FY+SN + HDEID EFLG I GK + +QTN++ GS RE R +LWFDP+
Sbjct: 78 ITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGD--REMRIHLWFDPTQ 135
Query: 152 DFHQYSILWTDSQIMEF-------KRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRV 204
D+H Y+I WT S+I+ F + FP +P+ +Y ++WD S WAT GKY+
Sbjct: 136 DYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPLRPLWVYGSVWDASSWATENGKYKA 195
Query: 205 NYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTGVSPSQRIKMENFRRKH 264
+Y+Y P+V ++ DF L C+ + +S C+ + VS +S Q ME ++ +
Sbjct: 196 DYRYQPFVGKYEDFKLGSCTV----EAASSCN---PASVSPYGQLSQQQVAAMEWVQKNY 248
Query: 265 MTYSYCYDQIRYKVPPFEC 283
M Y+YC D R EC
Sbjct: 249 MVYNYCDDPTRDHTLTPEC 267
>pdb|1UMZ|A Chain A, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UMZ|B Chain B, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UN1|A Chain A, Xyloglucan Endotransglycosylase Native Structure.
pdb|1UN1|B Chain B, Xyloglucan Endotransglycosylase Native Structure
Length = 278
Score = 158 bits (400), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 93/267 (34%), Positives = 138/267 (51%), Gaps = 22/267 (8%)
Query: 30 VPFDEGYSHLFGHDNLVVHTDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTA 89
V F Y + D++ G + L LD+ TG+GF S YL G FS +KL +A
Sbjct: 15 VAFGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSA 74
Query: 90 GVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDP 149
G V AFY+S+ + HDEIDFEFLGN G+ + +QTN++ G RE+R LWFDP
Sbjct: 75 GTVTAFYLSSQN---SEHDEIDFEFLGNRTGQPYILQTNVFTGGKGD--REQRIYLWFDP 129
Query: 150 SDDFHQYSILWT---------DSQIMEFKRTASMGGDFP-AKPMSLYATIWDGSDWATNG 199
+ +FH YS+LW D I FK +G FP +PM +Y+++W+ DWAT G
Sbjct: 130 TKEFHYYSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWATRG 189
Query: 200 GKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSK---VSIPTGVSPSQRIK 256
G + ++ AP++ + F + GC +K T+ ++ + Q +
Sbjct: 190 GLEKTDWSKAPFIASYRSFHIDGCE----ASVEAKFCATQGARWWDQKEFQDLDAFQYRR 245
Query: 257 MENFRRKHMTYSYCYDQIRYKVPPFEC 283
+ R+K+ Y+YC D+ RY P EC
Sbjct: 246 LSWVRQKYTIYNYCTDRSRYPSMPPEC 272
>pdb|3D6E|A Chain A, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
pdb|3D6E|B Chain B, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
Length = 201
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 69/143 (48%), Gaps = 16/143 (11%)
Query: 57 SLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLG 116
S ++ G G S Y +G + ++K PA G+V AFY S G DEID EFLG
Sbjct: 42 SYNKFDGGGNQSVQTYGYGLYEVNMK-PAK-NVGIVSAFYTSTGPTDGTPWDEIDIEFLG 99
Query: 117 NIRGKDWRIQTNIYGNGSTSIGREER-YNLWFDPSDDFHQYSILWTDSQIM-----EFKR 170
K +Q N Y NG +G E+ NL FD ++ +H Y+ W + I + K
Sbjct: 100 KDTTK---VQFNYYTNG---VGNHEKIVNLGFDAANSYHTYAFDWQPNSIKWYVDGQLKH 153
Query: 171 TASMGGDFPAKPMSLYATIWDGS 193
TA+ P P +Y ++W G+
Sbjct: 154 TATT--QIPQTPGKIYMSLWAGA 174
>pdb|1CPM|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 214
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 82/178 (46%), Gaps = 22/178 (12%)
Query: 66 FVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRI 125
+ S ++Y +G + S+K PA T G+V +F+ G DEID EFLG K +
Sbjct: 6 YRSTNIYGYGLYEVSMK-PAKNT-GIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---V 60
Query: 126 QTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIMEF-----KRTASMGGDFPA 180
Q N Y NG G E+ +L FD S FH Y+ W I + K TA+ + P+
Sbjct: 61 QFNYYTNGVG--GHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGVLKHTATA--NIPS 116
Query: 181 KPMSLYATIWDGS---DWATNGGKYR-VNYKYAPY-VTEFSDFVLHGCSFDPIEQTSS 233
P + +W+G+ DW G Y N YA Y +++ G F+P +S
Sbjct: 117 TPGKIMMNLWNGTGVDDWL---GSYNGANPLYAEYDWVKYTSNQTGGSFFEPFNSYNS 171
>pdb|1CPN|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 208
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 79/173 (45%), Gaps = 20/173 (11%)
Query: 66 FVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRI 125
+ S ++Y +G + S+K PA T G+V +F+ G DEID EFLG K +
Sbjct: 6 YRSTNIYGYGLYEVSMK-PAKNT-GIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---V 60
Query: 126 QTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIMEF-----KRTASMGGDFPA 180
Q N Y NG G E+ +L FD S FH Y+ W I + K TA+ + P+
Sbjct: 61 QFNYYTNGVG--GHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGVLKHTATA--NIPS 116
Query: 181 KPMSLYATIWDGS---DW--ATNGGK-YRVNYKYAPYVTEFSDFVLHGCSFDP 227
P + +W+G+ DW + NG Y + Y + S F F+P
Sbjct: 117 TPGKIMMNLWNGTGVDDWLGSYNGANPLYAEYDWVKYTSNGSVFWEPKSYFNP 169
>pdb|1MAC|A Chain A, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
pdb|1MAC|B Chain B, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
Length = 212
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 67/138 (48%), Gaps = 17/138 (12%)
Query: 66 FVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRI 125
+ S ++Y +G + S+K PA T G+V +F+ G DEID EFLG K +
Sbjct: 62 YRSTNIYGYGLYEVSMK-PAKNT-GIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---V 116
Query: 126 QTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIMEF-----KRTASMGGDFPA 180
Q N Y NG G E+ +L FD S FH Y+ W I + K TA+ + P+
Sbjct: 117 QFNYYTNGVG--GHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGVLKHTATA--NIPS 172
Query: 181 KPMSLYATIWDGS---DW 195
P + +W+G+ DW
Sbjct: 173 TPGKIMMNLWNGTGVDDW 190
>pdb|1AXK|A Chain A, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
pdb|1AXK|B Chain B, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
Length = 394
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 67/138 (48%), Gaps = 17/138 (12%)
Query: 66 FVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRI 125
+ S ++Y +G + S+K PA T G+V +F+ G DEID EFLG K +
Sbjct: 6 YRSTNIYGYGLYEVSMK-PAKNT-GIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---V 60
Query: 126 QTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIMEF-----KRTASMGGDFPA 180
Q N Y NG G E+ +L FD S FH Y+ W I + K TA+ + P+
Sbjct: 61 QFNYYTNGVG--GHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGVLKHTATA--NIPS 116
Query: 181 KPMSLYATIWDGS---DW 195
P + +W+G+ DW
Sbjct: 117 TPGKIMMNLWNGTGVDDW 134
>pdb|1BYH|A Chain A, Molecular And Active-Site Structure Of A Bacillus
(1-3,1-4)- Beta-Glucanase
pdb|1GLH|A Chain A, Cation Binding To A Bacillus (1,3-1,4)-Beta-Glucanase.
Geometry, Affinity And Effect On Protein Stability
pdb|2AYH|A Chain A, Crystal And Molecular Structure At 1.6 Angstroms
Resolution Of The Hybrid Bacillus
Endo-1,3-1,4-Beta-D-Glucan 4- Glucanohydrolase H(A16-M)
Length = 214
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 67/138 (48%), Gaps = 17/138 (12%)
Query: 66 FVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRI 125
+ S ++Y +G + S+K PA T G+V +F+ G DEID EFLG K +
Sbjct: 64 YRSTNIYGYGLYEVSMK-PAKNT-GIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---V 118
Query: 126 QTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIMEF-----KRTASMGGDFPA 180
Q N Y NG G E+ +L FD S FH Y+ W I + K TA+ + P+
Sbjct: 119 QFNYYTNGVG--GHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGVLKHTATA--NIPS 174
Query: 181 KPMSLYATIWDGS---DW 195
P + +W+G+ DW
Sbjct: 175 TPGKIMMNLWNGTGVDDW 192
>pdb|1U0A|A Chain A, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|B Chain B, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|C Chain C, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|D Chain D, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
Length = 214
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 17/138 (12%)
Query: 66 FVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRI 125
+ S ++Y +G + S+K PA T G+V +F+ G D+ID +FLG K +
Sbjct: 64 YRSTNIYGYGLYEVSMK-PAKNT-GIVSSFFTYTGPAHGTQWDQIDIQFLGKDTTK---V 118
Query: 126 QTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIMEF-----KRTASMGGDFPA 180
Q N Y NG G E+ +L FD S FH Y+ W I + K TA+ + P+
Sbjct: 119 QFNYYTNGVG--GHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGVLKHTATA--NIPS 174
Query: 181 KPMSLYATIWDGS---DW 195
P + +W+G+ DW
Sbjct: 175 TPGKIMMNLWNGTGVDDW 192
>pdb|3I4I|A Chain A, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
pdb|3I4I|B Chain B, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
Length = 234
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 10/134 (7%)
Query: 62 TGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGK 121
G+ + + D + +G + +K PA G+V +F+ G + DEID EFLG K
Sbjct: 80 AGAEYRTRDKFGYGLYQVRMK-PAK-NPGIVSSFFTYTGPVHGTPWDEIDIEFLGKDTTK 137
Query: 122 DWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQI---MEFKRTASMGGDF 178
+Q N Y N + + E Y+L FD S+DFH Y+ W + I ++ + D
Sbjct: 138 ---VQFNYYTNSAGN--HEYIYDLRFDASEDFHIYAFNWQPNYIAWLVDGEEVYRAYDDI 192
Query: 179 PAKPMSLYATIWDG 192
P P + IW G
Sbjct: 193 PVHPGKIMLNIWPG 206
>pdb|1GBG|A Chain A, Bacillus Licheniformis Beta-Glucanase
Length = 214
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 16/132 (12%)
Query: 68 SHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQT 127
S Y +G + ++K PA G+V +F+ G DEID EFLG K +Q
Sbjct: 66 SVQTYGYGLYEVNMK-PAK-NVGIVSSFFTYTGPTDGTPWDEIDIEFLGKDTTK---VQF 120
Query: 128 NIYGNGSTSIGREER-YNLWFDPSDDFHQYSILWTDSQIM-----EFKRTASMGGDFPAK 181
N Y NG +G E+ NL FD ++ +H Y+ W + I + K TA+ P
Sbjct: 121 NYYTNG---VGNHEKIVNLGFDAANSYHTYAFDWQPNSIKWYVDGQLKHTATT--QIPQT 175
Query: 182 PMSLYATIWDGS 193
P + +W+G+
Sbjct: 176 PGKIMMNLWNGA 187
>pdb|1AJK|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
pdb|1AJK|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
Length = 214
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 68/154 (44%), Gaps = 20/154 (12%)
Query: 90 GVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDP 149
G+V +F+ G DEID EFLG K +Q N Y NG G E+ +L FD
Sbjct: 3 GIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVG--GHEKVISLGFDA 57
Query: 150 SDDFHQYSILWTDSQIMEF-----KRTASMGGDFPAKPMSLYATIWDGS---DWATNGGK 201
S FH Y+ W I + K TA+ + P+ P + +W+G+ DW G
Sbjct: 58 SKGFHTYAFDWQPGYIKWYVDGVLKHTATA--NIPSTPGKIMMNLWNGTGVDDWL---GS 112
Query: 202 YR-VNYKYAPY-VTEFSDFVLHGCSFDPIEQTSS 233
Y N YA Y +++ G F+P +S
Sbjct: 113 YNGANPLYAEYDWVKYTSNQTGGSFFEPFNSYNS 146
>pdb|3O5S|A Chain A, Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanase From
Bacillus Subtilis (Strain 168)
Length = 238
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 14/127 (11%)
Query: 72 YLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYG 131
Y +G + +K PA T G+V +F+ G DEID EFLG K +Q N Y
Sbjct: 94 YGYGLYEVRMK-PAKNT-GIVSSFFTYTGPTDGTPWDEIDIEFLGKDTTK---VQFNYYT 148
Query: 132 NGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIM-----EFKRTASMGGDFPAKPMSLY 186
NG+ + E+ +L FD ++ +H Y+ W + I + K TA+ P P +
Sbjct: 149 NGAGN--HEKIVDLGFDAANAYHTYAFDWQPNSIKWYVDGQLKHTAT--NQIPTTPGKIM 204
Query: 187 ATIWDGS 193
+W+G+
Sbjct: 205 MNLWNGT 211
>pdb|1AJO|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
pdb|1AJO|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
Length = 214
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 66 FVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRI 125
+ S ++Y +G + S+K PA T G+V +F+ G DEID EFLG K +
Sbjct: 152 YRSTNIYGYGLYEVSMK-PAKNT-GIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---V 206
Query: 126 QTNIYGNG 133
Q N Y NG
Sbjct: 207 QFNYYTNG 214
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 15/106 (14%)
Query: 138 GREERYNLWFDPSDDFHQYSILWTDSQIMEF-----KRTASMGGDFPAKPMSLYATIWDG 192
G E+ +L FD S FH Y+ W I + K TA+ + P+ P + +W+G
Sbjct: 3 GHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGVLKHTATA--NIPSTPGKIMMNLWNG 60
Query: 193 S---DWATNGGKYR-VNYKYAPY-VTEFSDFVLHGCSFDPIEQTSS 233
+ DW G Y N YA Y +++ G F+P +S
Sbjct: 61 TGVDDWL---GSYNGANPLYAEYDWVKYTSNQTGGSFFEPFNSYNS 103
>pdb|2VY0|A Chain A, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
pdb|2VY0|B Chain B, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
Length = 264
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 13/96 (13%)
Query: 78 SASIKLPADYTAGVVVAFYMSNGDMFE---KNHDEID-FEFLGNIRGKDWRIQTNIYGNG 133
A IKLP G+ AF+M ++ E N EID EFLG+ + I ++G G
Sbjct: 105 EARIKLPKG--KGLWPAFWMLGSNIREVGWPNCGEIDIMEFLGH---EPRTIHGTVHGPG 159
Query: 134 -STSIGREERYNL---WFDPSDDFHQYSILWTDSQI 165
S S G Y L D ++DFH + I+W +I
Sbjct: 160 YSGSKGITRAYTLPEGVPDFTEDFHVFGIVWYPDKI 195
>pdb|1DYP|A Chain A, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfate-3,6-Anhydro-D-
Galactose 4 Galactohydrolase
Length = 271
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 18/112 (16%)
Query: 74 HGFFSASIKLPADYTAGVVVAFY---------MSNGDMFEKNHDEIDFEFLGNIRGKDWR 124
+G++ A IK + + GV AF+ GD+ D ++ +R D
Sbjct: 97 YGYYEARIKGASTF-PGVSPAFWXYSTIDRSLTKEGDVQYSEIDVVELTQKSAVRESDHD 155
Query: 125 IQTNIYGNGSTSIGR--------EERYNLWFDPSDDFHQYSILWTDSQIMEF 168
+ + NG + R Y+L FDP +DFH Y + T +I +
Sbjct: 156 LHNIVVKNGKPTWXRPGSFPQTNHNGYHLPFDPRNDFHTYGVNVTKDKITWY 207
>pdb|1HC1|A Chain A, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HCY|A Chain A, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HCY|B Chain B, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HCY|C Chain C, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HCY|D Chain D, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HCY|E Chain E, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HCY|F Chain F, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HC1|B Chain B, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HC1|C Chain C, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HC1|D Chain D, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HC1|E Chain E, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HC1|F Chain F, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
Length = 657
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 141 ERYNLWFDPSDDFHQYSILWTD-SQIMEFKRTASMGGDFPAKPMSLYATIWDG 192
ER + W DP D+ H I+ + + +K GG+FP +P +++ DG
Sbjct: 234 ERLSNWLDPVDELHWDRIIREGFAPLTSYK----YGGEFPVRPDNIHFEDVDG 282
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,747,506
Number of Sequences: 62578
Number of extensions: 419418
Number of successful extensions: 831
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 775
Number of HSP's gapped (non-prelim): 32
length of query: 325
length of database: 14,973,337
effective HSP length: 99
effective length of query: 226
effective length of database: 8,778,115
effective search space: 1983853990
effective search space used: 1983853990
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)