BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020507
(325 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IEI|A Chain A, Crystal Structure Of Human Leucine
Carboxylmethyltransferase-1 In Complex With S-Adenosyl
Homocysteine
pdb|3IEI|B Chain B, Crystal Structure Of Human Leucine
Carboxylmethyltransferase-1 In Complex With S-Adenosyl
Homocysteine
pdb|3IEI|C Chain C, Crystal Structure Of Human Leucine
Carboxylmethyltransferase-1 In Complex With S-Adenosyl
Homocysteine
pdb|3IEI|D Chain D, Crystal Structure Of Human Leucine
Carboxylmethyltransferase-1 In Complex With S-Adenosyl
Homocysteine
pdb|3IEI|E Chain E, Crystal Structure Of Human Leucine
Carboxylmethyltransferase-1 In Complex With S-Adenosyl
Homocysteine
pdb|3IEI|F Chain F, Crystal Structure Of Human Leucine
Carboxylmethyltransferase-1 In Complex With S-Adenosyl
Homocysteine
pdb|3IEI|G Chain G, Crystal Structure Of Human Leucine
Carboxylmethyltransferase-1 In Complex With S-Adenosyl
Homocysteine
pdb|3IEI|H Chain H, Crystal Structure Of Human Leucine
Carboxylmethyltransferase-1 In Complex With S-Adenosyl
Homocysteine
pdb|3P71|T Chain T, Crystal Structure Of The Complex Of Lcmt-1 And Pp2a
Length = 334
Score = 180 bits (456), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 108/304 (35%), Positives = 161/304 (52%), Gaps = 16/304 (5%)
Query: 10 SNKAAVQATNDDASASKLSCVKKGYMKDDYIHLFVR-RPVRRSPIINRGYFARWAALRRL 68
N V+ T +DAS K V GY D YI FVR R++P INRGYFAR + +L
Sbjct: 21 ENDEGVRGTCEDASLCKRFAVSIGYWHDPYIQHFVRLSKERKAPEINRGYFARVHGVSQL 80
Query: 69 LYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAAL 128
+ FL +CH QI++LGAG DTT+++L+ E Y E+DF + ++K
Sbjct: 81 IKAFLR-----KTECHC--QIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHS 133
Query: 129 IETHGELKDKVGVTASIS--QAKGEVL-GDNYKLLPVDLRDIQMLNEVINLANMDPSLPT 185
I+ L + S Q G +L Y ++ DLRD+ L E + NM+ LPT
Sbjct: 134 IKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPT 193
Query: 186 FIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRGCALL 245
+IAECVL+Y+ P+ S ++ WA+ +F A+F YEQ++ D FGQ MI NL R C L
Sbjct: 194 LLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMGDRFGQIMIENLRRRQCDLA 253
Query: 246 GINATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFINPQERRRSTIVL-----LMQSMMP 300
G+ +L ++++ L GW+ A A DM+ +Y+ + R ++ L++ +M
Sbjct: 254 GVETCKSLESQKERLLSNGWETASAVDMMELYNRLPRAEVSRIESLEFLDEMELLEQLMR 313
Query: 301 WGCL 304
CL
Sbjct: 314 HYCL 317
>pdb|3O7W|A Chain A, The Crystal Structure Of Human Leucine Carboxyl
Methyltransferase 1
Length = 294
Score = 149 bits (375), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 102/304 (33%), Positives = 153/304 (50%), Gaps = 40/304 (13%)
Query: 10 SNKAAVQATNDDASASKLSCVKKGYMKDDYIHLFVR-RPVRRSPIINRGYFARWAALRRL 68
N V+ T +DAS K V GY D YI FVR R++P INRGYFAR + +L
Sbjct: 5 ENDEGVRGTCEDASLCKRFAVSIGYWHDPYIQHFVRLSKERKAPEINRGYFARVHGVSQL 64
Query: 69 LYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAAL 128
+ FL +CH QI++LGAG DTT+++L+ E P Y E+DF + ++K
Sbjct: 65 IKAFLR-----KTECHC--QIVNLGAGMDTTFWRLKDEDLLPSKYFEVDFPMIVTRKLHS 117
Query: 129 IETHGELKDKVGVTASIS--QAKGEVL-GDNYKLLPVDLRDIQMLNEVINLANMDPSLPT 185
I+ L + S Q G +L Y ++ DLRD+ L E + NM+ LPT
Sbjct: 118 IKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPT 177
Query: 186 FIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRGCALL 245
+IAECVL+Y+ P+ S ++ WA+ +F A+F YEQ++ ++LES+
Sbjct: 178 LLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNEG--------KSLESQ----- 224
Query: 246 GINATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFINPQERRRSTIVL-----LMQSMMP 300
KE+L L GW+ A A DM+ +Y+ + R ++ L++ +M
Sbjct: 225 ----------KERL-LSNGWETASAVDMMELYNRLPRAEVSRIESLEFLDEMELLEQLMR 273
Query: 301 WGCL 304
CL
Sbjct: 274 HYCL 277
>pdb|2ZW9|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZW9|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
Length = 695
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/300 (26%), Positives = 138/300 (46%), Gaps = 44/300 (14%)
Query: 14 AVQATNDDASASKLSC---------------VKKGYMKDDYIHLFVRRPVRRSPIINRGY 58
A+Q TN+ + ASK S + K +Y FV + ++RSP INRGY
Sbjct: 26 AIQGTNNSSIASKRSVELLYLPKLSSANNFQMDKNNKLLEYFKFFVPKKIKRSPCINRGY 85
Query: 59 FARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQL----QAEGKAPH--- 111
+ R A+R L ++ + DKK +++LG G+D FQL + + H
Sbjct: 86 WLRLFAIRSRLNSIIE-QTPQDKKI----VVVNLGCGYDPLPFQLLDTNNIQSQQYHDRV 140
Query: 112 LYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLL--------PVD 163
++++D+ ++ K LI+T EL +G +S+ K V N L P D
Sbjct: 141 SFIDIDYSDLLKIKIELIKTIPELSKIIG----LSEDKDYVDDSNVDFLTTPKYLARPCD 196
Query: 164 LRDIQMLNEVINLANM-DPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQ 222
L D +M + ++N + DP++ +AE L Y+ P+ S +I+ SK + F + EQ
Sbjct: 197 LNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-MENSHFIILEQ 255
Query: 223 IHPD---DAFGQQMIRNLESRGCALLGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYST 279
+ P + F +QM+ + + L + T+ ++ + F G+ DM +++ +
Sbjct: 256 LIPKGPFEPFSKQMLAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGDMFQLWES 315
>pdb|2OB1|A Chain A, Ppm1 With 1,8-Ans
pdb|2OB1|B Chain B, Ppm1 With 1,8-Ans
pdb|2OB1|C Chain C, Ppm1 With 1,8-Ans
Length = 319
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 120/259 (46%), Gaps = 34/259 (13%)
Query: 44 VRRPVRRS-PIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQ 102
V + +R S P++N G + R + + +FL + K Q+++LG G D
Sbjct: 54 VDKAMRSSFPVMNYGTYLRTVGIDAAILEFL--------VANEKVQVVNLGCGSDLRMLP 105
Query: 103 LQAEGKAPHL-YVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDN--YKL 159
L PHL YV++D+ E K +++ L+ +G++ AK L D YKL
Sbjct: 106 LLQ--MFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKE-DTAKSPFLIDQGRYKL 162
Query: 160 LPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFL 219
DL DI ++++ +PT +I+EC+L Y+ + S+ ++ FS ++
Sbjct: 163 AACDLNDITETTRLLDVCT-KREIPTIVISECLLCYMHNNESQLLINTIMSKFSHGLWIS 221
Query: 220 YEQI---HPDDAFGQQMIRNL-ESRGCALLGINATPTLL---AKEKLFLDQGWQQA---V 269
Y+ I P+D FG M NL ESR + PTL+ +KEK W A +
Sbjct: 222 YDPIGGSQPNDRFGAIMQSNLKESRNLEM------PTLMTYNSKEK--YASRWSAAPNVI 273
Query: 270 AWDMLRVYSTFINPQERRR 288
DM +++ I ER+R
Sbjct: 274 VNDMWEIFNAQIPESERKR 292
>pdb|1RJD|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJD|B Chain B, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJD|C Chain C, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJE|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJE|B Chain B, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJE|C Chain C, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJF|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJF|B Chain B, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJF|C Chain C, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJG|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
Length = 334
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 120/259 (46%), Gaps = 34/259 (13%)
Query: 44 VRRPVRRS-PIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQ 102
V + +R S P++N G + R + + +FL + K Q+++LG G D
Sbjct: 63 VDKAMRSSFPVMNYGTYLRTVGIDAAILEFL--------VANEKVQVVNLGCGSDLRMLP 114
Query: 103 LQAEGKAPHL-YVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDN--YKL 159
L PHL YV++D+ E K +++ L+ +G++ AK L D YKL
Sbjct: 115 LLQ--MFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKE-DTAKSPFLIDQGRYKL 171
Query: 160 LPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFL 219
DL DI ++++ +PT +I+EC+L Y+ + S+ ++ FS ++
Sbjct: 172 AACDLNDITETTRLLDVCT-KREIPTIVISECLLCYMHNNESQLLINTIMSKFSHGLWIS 230
Query: 220 YEQI---HPDDAFGQQMIRNL-ESRGCALLGINATPTLL---AKEKLFLDQGWQQA---V 269
Y+ I P+D FG M NL ESR + PTL+ +KEK W A +
Sbjct: 231 YDPIGGSQPNDRFGAIMQSNLKESRNLEM------PTLMTYNSKEK--YASRWSAAPNVI 282
Query: 270 AWDMLRVYSTFINPQERRR 288
DM +++ I ER+R
Sbjct: 283 VNDMWEIFNAQIPESERKR 301
>pdb|3IDQ|A Chain A, Crystal Structure Of S. Cerevisiae Get3 At 3.7 Angstrom
Resolution
Length = 369
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 15/111 (13%)
Query: 84 HTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTA 143
H K+Q G FDT F G L F+++ + + L+E GE+ +K+G
Sbjct: 148 HIKRQEQGEGETFDTVIFDTAPTGHT------LRFLQLPNTLSKLLEKFGEITNKLGPML 201
Query: 144 SISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLI 194
+ G V + L +++ E I DP L TF+ CV I
Sbjct: 202 NSFMGAGNV------DISGKLNELKANVETIRQQFTDPDLTTFV---CVCI 243
>pdb|2WOJ|A Chain A, Adp-Alf4 Complex Of S. Cerevisiae Get3
pdb|2WOJ|B Chain B, Adp-Alf4 Complex Of S. Cerevisiae Get3
pdb|2WOJ|C Chain C, Adp-Alf4 Complex Of S. Cerevisiae Get3
pdb|2WOJ|D Chain D, Adp-Alf4 Complex Of S. Cerevisiae Get3
pdb|3H84|A Chain A, Crystal Structure Of Get3
pdb|3H84|B Chain B, Crystal Structure Of Get3
pdb|3ZS8|A Chain A, S. Cerevisiae Get3 Complexed With A Cytosolic Get1
Fragment
pdb|3ZS8|B Chain B, S. Cerevisiae Get3 Complexed With A Cytosolic Get1
Fragment
pdb|3ZS9|A Chain A, S. Cerevisiae Get3-Adp-Alf4- Complex With A Cytosolic Get2
Fragment
pdb|3ZS9|B Chain B, S. Cerevisiae Get3-Adp-Alf4- Complex With A Cytosolic Get2
Fragment
Length = 354
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 15/111 (13%)
Query: 84 HTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTA 143
H K+Q G FDT F G L F+++ + + L+E GE+ +K+G
Sbjct: 148 HIKRQEQGEGETFDTVIFDTAPTGHT------LRFLQLPNTLSKLLEKFGEITNKLGPML 201
Query: 144 SISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLI 194
+ G V + L +++ E I DP L TF+ CV I
Sbjct: 202 NSFMGAGNV------DISGKLNELKANVETIRQQFTDPDLTTFV---CVCI 243
>pdb|3VLC|A Chain A, Crystal Structure Of S. Cerevisiae Get3 In The Semi Open
Conformation In Complex With Get1 Cytosolic Domain At
4.5 Angstrom Resolution
Length = 354
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 15/111 (13%)
Query: 84 HTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTA 143
H K+Q G FDT F G L F+++ + + L+E GE+ +K+G
Sbjct: 148 HIKRQEQDEGETFDTVIFDTAPTGHT------LRFLQLPNTLSKLLEKFGEITNKLGPML 201
Query: 144 SISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLI 194
+ G V + L +++ E I DP L TF+ CV I
Sbjct: 202 NSFMGAGNV------DISGKLNELKANVETIRQQFTDPDLTTFV---CVCI 243
>pdb|3SJA|A Chain A, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJA|B Chain B, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJA|E Chain E, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJA|F Chain F, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJA|I Chain I, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJB|A Chain A, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJB|B Chain B, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJC|A Chain A, Crystal Structure Of S.Cerevisiae Get3 In The Semi-Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJC|B Chain B, Crystal Structure Of S.Cerevisiae Get3 In The Semi-Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJC|E Chain E, Crystal Structure Of S.Cerevisiae Get3 In The Semi-Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJC|F Chain F, Crystal Structure Of S.Cerevisiae Get3 In The Semi-Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJD|A Chain A, Crystal Structure Of S. Cerevisiae Get3 With Bound
Adp-Mg2+ In Complex With Get2 Cytosolic Domain
pdb|3SJD|B Chain B, Crystal Structure Of S. Cerevisiae Get3 With Bound
Adp-Mg2+ In Complex With Get2 Cytosolic Domain
pdb|3SJD|C Chain C, Crystal Structure Of S. Cerevisiae Get3 With Bound
Adp-Mg2+ In Complex With Get2 Cytosolic Domain
Length = 362
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 15/111 (13%)
Query: 84 HTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTA 143
H K+Q G FDT F G L F+++ + + L+E GE+ +K+G
Sbjct: 148 HIKRQEQGEGETFDTVIFDTAPTGHT------LRFLQLPNTLSKLLEKFGEITNKLGPML 201
Query: 144 SISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLI 194
+ G V + L +++ E I DP L TF+ CV I
Sbjct: 202 NSFMGAGNV------DISGKLNELKANVETIRQQFTDPDLTTFV---CVCI 243
>pdb|3A36|A Chain A, Structural Insight Into The Membrane Insertion Of Tail-
Anchored Proteins By Get3
pdb|3A36|B Chain B, Structural Insight Into The Membrane Insertion Of Tail-
Anchored Proteins By Get3
pdb|3A37|A Chain A, Structural Insight Into The Membrane Insertion Of Tail-
Anchored Proteins By Get3
pdb|3A37|B Chain B, Structural Insight Into The Membrane Insertion Of Tail-
Anchored Proteins By Get3
pdb|3B2E|A Chain A, Crystal Structure Of S. Cerevisiae Get3 In The Open
Conformation In Complex With Get1 Cytosolic Domain
pdb|3B2E|B Chain B, Crystal Structure Of S. Cerevisiae Get3 In The Open
Conformation In Complex With Get1 Cytosolic Domain
pdb|3B2E|C Chain C, Crystal Structure Of S. Cerevisiae Get3 In The Open
Conformation In Complex With Get1 Cytosolic Domain
pdb|3B2E|D Chain D, Crystal Structure Of S. Cerevisiae Get3 In The Open
Conformation In Complex With Get1 Cytosolic Domain
Length = 362
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 15/111 (13%)
Query: 84 HTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTA 143
H K+Q G FDT F G L F+++ + + L+E GE+ +K+G
Sbjct: 148 HIKRQEQDEGETFDTVIFDTAPTGHT------LRFLQLPNTLSKLLEKFGEITNKLGPML 201
Query: 144 SISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLI 194
+ G V + L +++ E I DP L TF+ CV I
Sbjct: 202 NSFMGAGNV------DISGKLNELKANVETIRQQFTDPDLTTFV---CVCI 243
>pdb|2CKD|A Chain A, Crystal Structure Of Ml2640 From Mycobacterium Leprae
pdb|2CKD|B Chain B, Crystal Structure Of Ml2640 From Mycobacterium Leprae
pdb|2UYO|A Chain A, Crystal Structure Of Ml2640c From Mycobacterium Leprae In
An Hexagonal Crystal Form
pdb|2UYQ|A Chain A, Crystal Structure Of Ml2640c From Mycobacterium Leprae In
Complex With S-Adenosylmethionine
Length = 310
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 21/110 (19%)
Query: 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASIS 146
+Q + L +G D+ ++L + E+D +V + K+ + HG VT +
Sbjct: 104 RQFVILASGLDSRAYRL--DWPTGTTVYEIDQPKVLAYKSTTLAEHG-------VTPTAD 154
Query: 147 QAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYL 196
+ + +P+DLR Q + A DPS T +AE +L+YL
Sbjct: 155 R----------REVPIDLR--QDWPPALRSAGFDPSARTAWLAEGLLMYL 192
>pdb|2EC2|A Chain A, Crystal Structure Of Transposase From Sulfolobus Tokodaii
pdb|2EC2|B Chain B, Crystal Structure Of Transposase From Sulfolobus Tokodaii
pdb|2EC2|C Chain C, Crystal Structure Of Transposase From Sulfolobus Tokodaii
pdb|2EC2|D Chain D, Crystal Structure Of Transposase From Sulfolobus Tokodaii
pdb|2EC2|E Chain E, Crystal Structure Of Transposase From Sulfolobus Tokodaii
pdb|2EC2|F Chain F, Crystal Structure Of Transposase From Sulfolobus Tokodaii
Length = 136
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 38 DYIHLFVRRPVRRSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFD 97
D+IHLFV P R +P YF +A R +L +F + + K T+ +S
Sbjct: 59 DHIHLFVNCPPRYAPSYLANYFKGKSA-RLILKKFQELKKSTNGKLWTRSYFVSTSGNVS 117
Query: 98 T 98
+
Sbjct: 118 S 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,085,588
Number of Sequences: 62578
Number of extensions: 356855
Number of successful extensions: 762
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 748
Number of HSP's gapped (non-prelim): 15
length of query: 325
length of database: 14,973,337
effective HSP length: 99
effective length of query: 226
effective length of database: 8,778,115
effective search space: 1983853990
effective search space used: 1983853990
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)