Query 020507
Match_columns 325
No_of_seqs 188 out of 1334
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 02:56:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020507.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020507hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2918 Carboxymethyl transfer 100.0 4.6E-75 9.9E-80 534.2 23.8 300 7-314 15-319 (335)
2 TIGR00027 mthyl_TIGR00027 meth 100.0 8.4E-43 1.8E-47 323.1 22.7 230 16-279 1-256 (260)
3 COG3315 O-Methyltransferase in 100.0 7.1E-41 1.5E-45 315.0 19.9 239 7-277 6-269 (297)
4 PF04072 LCM: Leucine carboxyl 100.0 1.2E-38 2.6E-43 281.0 7.6 165 19-209 1-183 (183)
5 PF04672 Methyltransf_19: S-ad 98.6 3.1E-07 6.6E-12 85.2 11.3 159 85-269 68-233 (267)
6 TIGR00740 methyltransferase, p 97.8 0.004 8.7E-08 56.7 19.2 153 87-270 55-225 (239)
7 PRK15451 tRNA cmo(5)U34 methyl 97.3 0.025 5.3E-07 52.0 18.2 154 86-270 57-228 (247)
8 TIGR02716 C20_methyl_CrtF C-20 97.1 0.027 5.9E-07 53.3 16.5 150 86-269 150-303 (306)
9 PTZ00098 phosphoethanolamine N 97.0 0.019 4.2E-07 53.4 14.0 156 86-281 53-211 (263)
10 PRK11036 putative S-adenosyl-L 96.9 0.022 4.7E-07 52.5 12.8 191 37-271 7-206 (255)
11 TIGR00452 methyltransferase, p 96.7 0.017 3.6E-07 55.3 11.1 151 86-274 122-275 (314)
12 PF12147 Methyltransf_20: Puta 96.5 0.19 4.2E-06 47.4 16.4 178 59-269 113-295 (311)
13 PRK15068 tRNA mo(5)U34 methylt 96.4 0.11 2.4E-06 49.8 14.6 151 87-274 124-276 (322)
14 PF00891 Methyltransf_2: O-met 96.1 0.027 5.9E-07 51.3 8.5 101 86-226 101-204 (241)
15 TIGR02021 BchM-ChlM magnesium 95.8 0.35 7.6E-06 43.2 14.2 149 86-271 56-205 (219)
16 PLN03075 nicotianamine synthas 95.7 0.13 2.8E-06 48.8 11.2 152 33-221 76-232 (296)
17 TIGR02752 MenG_heptapren 2-hep 95.4 0.83 1.8E-05 41.0 15.2 153 87-271 47-217 (231)
18 PLN02336 phosphoethanolamine N 95.3 0.54 1.2E-05 47.2 14.9 153 86-279 267-421 (475)
19 PRK07580 Mg-protoporphyrin IX 95.2 0.7 1.5E-05 41.2 14.0 150 86-272 64-214 (230)
20 PLN02490 MPBQ/MSBQ methyltrans 94.8 0.55 1.2E-05 45.5 12.7 146 87-277 115-261 (340)
21 PLN02233 ubiquinone biosynthes 94.8 2.2 4.8E-05 39.5 16.3 158 86-272 74-248 (261)
22 PLN02244 tocopherol O-methyltr 94.7 1.8 3.9E-05 41.8 16.0 152 86-274 119-280 (340)
23 PF03848 TehB: Tellurite resis 94.6 0.27 5.9E-06 43.8 9.3 104 86-223 31-134 (192)
24 PF03291 Pox_MCEL: mRNA cappin 94.6 0.031 6.8E-07 53.9 3.6 189 86-296 63-295 (331)
25 PF01209 Ubie_methyltran: ubiE 94.6 0.67 1.5E-05 42.4 12.2 154 86-271 48-219 (233)
26 PRK11207 tellurite resistance 94.5 1.2 2.7E-05 39.3 13.5 106 86-225 31-138 (197)
27 TIGR03587 Pse_Me-ase pseudamin 94.4 0.89 1.9E-05 40.6 12.2 103 86-226 44-147 (204)
28 PLN02396 hexaprenyldihydroxybe 94.0 2.5 5.4E-05 40.7 15.2 174 60-270 107-287 (322)
29 PF05401 NodS: Nodulation prot 93.9 0.2 4.4E-06 44.7 6.9 101 86-221 44-145 (201)
30 KOG1975 mRNA cap methyltransfe 93.9 6.6 0.00014 37.9 17.2 223 50-313 93-370 (389)
31 PLN02585 magnesium protoporphy 93.8 4.9 0.00011 38.5 16.8 146 86-269 145-296 (315)
32 PRK14103 trans-aconitate 2-met 93.2 3.6 7.8E-05 37.7 14.4 142 86-268 30-180 (255)
33 TIGR00477 tehB tellurite resis 93.1 1.7 3.7E-05 38.3 11.7 103 86-223 31-135 (195)
34 smart00828 PKS_MT Methyltransf 93.0 2.6 5.6E-05 37.6 12.9 150 88-281 2-153 (224)
35 PF13649 Methyltransf_25: Meth 92.9 0.35 7.6E-06 37.6 6.2 96 89-215 1-100 (101)
36 TIGR03438 probable methyltrans 92.7 3.2 6.9E-05 39.3 13.5 110 86-220 64-175 (301)
37 PF06080 DUF938: Protein of un 92.6 4.4 9.5E-05 36.5 13.4 176 64-274 13-194 (204)
38 PF08003 Methyltransf_9: Prote 92.0 0.97 2.1E-05 43.1 8.9 152 86-273 116-268 (315)
39 PF13489 Methyltransf_23: Meth 91.8 4.2 9E-05 33.6 11.9 151 64-269 8-160 (161)
40 PRK11873 arsM arsenite S-adeno 91.6 6.5 0.00014 36.2 14.1 149 86-270 78-228 (272)
41 PF12847 Methyltransf_18: Meth 91.3 3.6 7.8E-05 32.0 10.5 105 87-221 3-110 (112)
42 PRK06202 hypothetical protein; 90.8 10 0.00022 34.0 14.3 148 86-270 61-220 (232)
43 PRK12335 tellurite resistance 90.4 2.2 4.7E-05 40.1 9.7 103 86-223 121-225 (287)
44 TIGR01934 MenG_MenH_UbiE ubiqu 89.7 13 0.00029 32.5 16.7 153 86-272 40-210 (223)
45 COG2230 Cfa Cyclopropane fatty 88.7 11 0.00024 35.7 12.8 148 87-275 74-226 (283)
46 PF02353 CMAS: Mycolic acid cy 88.5 21 0.00045 33.5 14.6 151 87-278 64-223 (273)
47 cd02440 AdoMet_MTases S-adenos 88.3 6.6 0.00014 28.7 9.4 99 89-220 2-102 (107)
48 PF08241 Methyltransf_11: Meth 87.8 7.4 0.00016 28.7 9.4 93 91-219 2-94 (95)
49 PLN02336 phosphoethanolamine N 87.7 6 0.00013 39.7 11.3 105 87-223 39-144 (475)
50 PRK05134 bifunctional 3-demeth 86.3 21 0.00045 31.9 13.0 151 86-271 49-204 (233)
51 KOG2361 Predicted methyltransf 86.2 1.9 4.1E-05 39.8 6.0 153 88-269 74-234 (264)
52 COG4106 Tam Trans-aconitate me 86.1 4.7 0.0001 36.8 8.3 95 86-222 31-129 (257)
53 PRK00536 speE spermidine synth 85.7 6.8 0.00015 36.6 9.6 118 86-214 73-194 (262)
54 TIGR01983 UbiG ubiquinone bios 85.2 26 0.00056 30.9 15.2 152 86-271 46-202 (224)
55 PLN02366 spermidine synthase 83.0 10 0.00022 36.2 9.8 45 86-131 92-137 (308)
56 PRK00216 ubiE ubiquinone/menaq 82.4 34 0.00074 30.1 15.8 155 87-272 53-225 (239)
57 KOG3178 Hydroxyindole-O-methyl 82.3 11 0.00024 36.5 9.7 139 86-270 178-328 (342)
58 PRK00121 trmB tRNA (guanine-N( 80.5 20 0.00044 31.6 10.3 126 86-241 41-173 (202)
59 PF13847 Methyltransf_31: Meth 80.4 29 0.00062 28.8 10.7 107 86-223 4-112 (152)
60 smart00138 MeTrc Methyltransfe 79.4 21 0.00046 33.1 10.4 56 155-220 185-240 (264)
61 PLN02232 ubiquinone biosynthes 79.0 13 0.00029 31.5 8.3 104 155-270 26-145 (160)
62 PF03059 NAS: Nicotianamine sy 78.8 9.8 0.00021 35.8 7.9 107 86-221 121-229 (276)
63 TIGR03439 methyl_EasF probable 78.7 44 0.00095 32.1 12.5 118 86-225 77-202 (319)
64 COG4262 Predicted spermidine s 77.4 6.8 0.00015 38.4 6.5 119 85-210 289-426 (508)
65 PRK00811 spermidine synthase; 76.9 21 0.00046 33.4 9.7 121 86-214 77-214 (283)
66 TIGR00091 tRNA (guanine-N(7)-) 76.7 51 0.0011 28.8 12.1 126 86-241 17-149 (194)
67 PRK01683 trans-aconitate 2-met 75.5 63 0.0014 29.3 15.9 143 86-267 32-182 (258)
68 KOG4300 Predicted methyltransf 74.9 40 0.00087 30.7 10.2 118 85-235 76-196 (252)
69 PRK08317 hypothetical protein; 72.9 64 0.0014 28.2 17.3 145 86-270 20-174 (241)
70 PRK10258 biotin biosynthesis p 72.7 73 0.0016 28.7 16.0 138 86-266 43-181 (251)
71 COG0421 SpeE Spermidine syntha 71.2 31 0.00067 32.6 9.2 121 86-214 77-213 (282)
72 PF07109 Mg-por_mtran_C: Magne 69.4 30 0.00064 27.4 7.2 71 192-269 4-79 (97)
73 PRK11705 cyclopropane fatty ac 66.3 1.4E+02 0.003 29.4 13.9 147 87-278 169-318 (383)
74 TIGR02072 BioC biotin biosynth 65.3 95 0.0021 27.2 16.2 138 86-268 35-172 (240)
75 TIGR03840 TMPT_Se_Te thiopurin 64.3 1.1E+02 0.0023 27.4 11.8 117 86-223 35-153 (213)
76 PRK05785 hypothetical protein; 61.2 1.2E+02 0.0027 27.1 11.7 135 87-264 53-204 (226)
77 PHA03412 putative methyltransf 59.9 8.3 0.00018 35.6 2.9 34 87-120 194-228 (241)
78 PRK06922 hypothetical protein; 58.6 2.6E+02 0.0055 29.9 14.8 177 86-292 419-627 (677)
79 PF05185 PRMT5: PRMT5 arginine 57.8 56 0.0012 32.9 8.7 125 61-216 162-291 (448)
80 PF01564 Spermine_synth: Sperm 57.1 46 0.001 30.5 7.4 116 86-213 77-213 (246)
81 smart00650 rADc Ribosomal RNA 55.1 1.2E+02 0.0025 25.7 9.2 58 86-167 14-71 (169)
82 PF08242 Methyltransf_12: Meth 54.4 4.6 9.9E-05 30.9 0.2 30 186-217 69-98 (99)
83 PRK13255 thiopurine S-methyltr 54.1 1.7E+02 0.0036 26.3 11.6 109 87-216 39-149 (218)
84 TIGR00438 rrmJ cell division p 52.6 1.5E+02 0.0033 25.4 11.1 107 86-224 33-148 (188)
85 TIGR00417 speE spermidine synt 52.3 1.3E+02 0.0029 27.7 9.8 45 86-131 73-118 (270)
86 COG4301 Uncharacterized conser 49.6 2.2E+02 0.0048 26.8 10.3 126 86-239 79-226 (321)
87 PTZ00146 fibrillarin; Provisio 49.5 2.4E+02 0.0052 26.8 12.5 135 87-273 134-272 (293)
88 PLN02589 caffeoyl-CoA O-methyl 49.5 2.1E+02 0.0044 26.4 10.4 110 86-224 80-192 (247)
89 TIGR02081 metW methionine bios 49.4 1.7E+02 0.0037 25.2 11.9 141 87-270 15-165 (194)
90 PHA03411 putative methyltransf 47.5 18 0.0004 34.1 3.1 34 87-120 206-240 (279)
91 PF01739 CheR: CheR methyltran 47.0 23 0.00049 31.5 3.5 57 154-220 117-173 (196)
92 PRK10611 chemotaxis methyltran 43.4 23 0.00051 33.5 3.2 58 154-220 203-260 (287)
93 PRK05904 coproporphyrinogen II 43.4 1.3E+02 0.0027 29.3 8.4 60 182-243 56-115 (353)
94 PRK11783 rlmL 23S rRNA m(2)G24 42.9 2.7E+02 0.0057 29.8 11.4 127 55-222 519-656 (702)
95 COG0635 HemN Coproporphyrinoge 42.6 1.2E+02 0.0026 30.2 8.3 61 181-243 86-149 (416)
96 COG3580 Uncharacterized protei 41.7 40 0.00088 32.3 4.4 47 69-120 264-314 (351)
97 PRK00377 cbiT cobalt-precorrin 40.4 2.5E+02 0.0053 24.4 12.9 26 199-224 122-147 (198)
98 PRK15128 23S rRNA m(5)C1962 me 39.3 3.9E+02 0.0085 26.4 13.5 150 56-245 202-365 (396)
99 PF08557 Lipid_DES: Sphingolip 39.3 36 0.00078 22.3 2.6 33 109-142 4-36 (39)
100 PLN02823 spermine synthase 38.8 2.8E+02 0.0061 26.8 9.9 121 86-214 104-245 (336)
101 PLN02781 Probable caffeoyl-CoA 38.1 3.1E+02 0.0066 24.8 12.0 110 86-224 69-180 (234)
102 PF07283 TrbH: Conjugal transf 37.5 86 0.0019 25.8 5.2 45 200-245 8-53 (121)
103 PRK11188 rrmJ 23S rRNA methylt 37.2 3E+02 0.0064 24.4 12.5 102 87-220 53-163 (209)
104 PRK07379 coproporphyrinogen II 35.7 2E+02 0.0042 28.4 8.5 86 181-268 65-168 (400)
105 COG2227 UbiG 2-polyprenyl-3-me 33.8 3.2E+02 0.0068 25.3 8.8 146 86-269 60-212 (243)
106 KOG0406 Glutathione S-transfer 32.3 2.4E+02 0.0053 25.9 7.8 70 156-237 34-103 (231)
107 KOG1540 Ubiquinone biosynthesi 31.8 4.5E+02 0.0097 24.9 13.3 154 86-269 101-278 (296)
108 PRK14121 tRNA (guanine-N(7)-)- 31.2 5.3E+02 0.012 25.6 12.3 147 86-268 123-282 (390)
109 COG1352 CheR Methylase of chem 30.1 1.1E+02 0.0024 28.7 5.3 57 154-220 183-239 (268)
110 PRK13883 conjugal transfer pro 29.9 1.4E+02 0.0031 25.5 5.5 44 201-245 37-81 (151)
111 PRK08287 cobalt-precorrin-6Y C 29.3 3.6E+02 0.0078 23.0 12.8 100 86-223 32-132 (187)
112 PRK05660 HemN family oxidoredu 28.7 2E+02 0.0043 28.1 7.2 86 181-268 57-160 (378)
113 PF05175 MTS: Methyltransferas 28.6 2.6E+02 0.0057 23.6 7.2 110 68-218 22-136 (170)
114 cd03073 PDI_b'_ERp72_ERp57 PDI 28.2 3.1E+02 0.0066 21.8 7.1 52 155-210 50-109 (111)
115 KOG1500 Protein arginine N-met 28.1 2.1E+02 0.0045 28.1 6.8 79 86-196 178-256 (517)
116 COG2263 Predicted RNA methylas 26.8 1.5E+02 0.0033 26.5 5.3 120 86-270 46-166 (198)
117 PF08123 DOT1: Histone methyla 26.5 3.8E+02 0.0083 23.9 8.1 119 86-226 43-163 (205)
118 PF14965 BRI3BP: Negative regu 26.5 86 0.0019 27.5 3.6 34 169-210 49-82 (177)
119 TIGR00539 hemN_rel putative ox 26.4 4E+02 0.0086 25.6 8.8 60 182-243 51-112 (360)
120 TIGR03184 DNA_S_dndE DNA sulfu 26.2 73 0.0016 25.5 3.0 42 281-322 3-44 (105)
121 PRK03612 spermidine synthase; 25.9 6.6E+02 0.014 25.7 10.7 41 86-126 298-339 (521)
122 PF07091 FmrO: Ribosomal RNA m 25.1 79 0.0017 29.4 3.4 44 86-131 106-151 (251)
123 PF06180 CbiK: Cobalt chelatas 24.9 2.4E+02 0.0052 26.3 6.6 115 156-270 74-202 (262)
124 PRK13347 coproporphyrinogen II 24.7 3.1E+02 0.0067 27.5 7.9 60 182-243 103-164 (453)
125 PRK10329 glutaredoxin-like pro 24.1 1.7E+02 0.0037 21.8 4.6 45 161-206 30-74 (81)
126 PF06057 VirJ: Bacterial virul 23.3 70 0.0015 28.5 2.6 65 228-294 16-102 (192)
127 PRK08446 coproporphyrinogen II 23.2 3.1E+02 0.0067 26.4 7.3 60 182-243 51-110 (350)
128 PRK08485 DNA polymerase III su 23.0 5.1E+02 0.011 23.4 8.0 55 154-210 26-80 (206)
129 TIGR00537 hemK_rel_arch HemK-r 22.7 4.7E+02 0.01 22.0 12.8 40 87-129 21-61 (179)
130 PF10294 Methyltransf_16: Puta 22.5 4.9E+02 0.011 22.2 12.1 111 86-222 46-158 (173)
131 PRK14968 putative methyltransf 22.4 4.6E+02 0.0099 21.8 14.7 43 86-130 24-66 (188)
132 PRK07402 precorrin-6B methylas 21.5 5.2E+02 0.011 22.2 12.3 101 87-223 42-143 (196)
133 TIGR00411 redox_disulf_1 small 21.3 2.3E+02 0.005 20.1 4.8 49 155-208 30-78 (82)
134 PRK11805 N5-glutamine S-adenos 20.7 7.2E+02 0.016 23.4 12.3 37 87-124 135-172 (307)
135 TIGR00538 hemN oxygen-independ 20.1 3.2E+02 0.0069 27.3 6.9 60 182-243 102-163 (455)
No 1
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-75 Score=534.22 Aligned_cols=300 Identities=36% Similarity=0.608 Sum_probs=275.9
Q ss_pred CCcCccchhhHHhHHHHHhhhcccCCCCCCcHhHHHhhc-CCCCCCcccccchhHHHHHHHHHHHHHHhcCCCCCCcCCC
Q 020507 7 DSQSNKAAVQATNDDASASKLSCVKKGYMKDDYIHLFVR-RPVRRSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHT 85 (325)
Q Consensus 7 ~~~~~d~~V~~Ta~~a~~~Ras~~~~gy~~Dp~a~~fv~-~~~r~~p~inrg~~~R~~~id~~i~~Fl~~~~~~~~~~~~ 85 (325)
...+.|.+||+|+++++.+|+++...||+.|||+..|+. +..|++|.||||||+|+.+||..|..|+.+.. +
T Consensus 15 ~~~~~d~~vq~Tnddss~ck~~~~~~gy~~d~~~~~~~~~~~~rr~P~inRGy~~R~~aI~~~v~~Fl~~~~-------~ 87 (335)
T KOG2918|consen 15 RGKSADSAVQGTNDDSSLCKRSATKSGYWHDPFIKLFVPSKKARRAPEINRGYWARTMAIRHAVRAFLEQTD-------G 87 (335)
T ss_pred cccCcchhhhhccchhhhhhhHHHhcCCccCchhhhhccccccCCCceecchhhHHHHHHHHHHHHHHHhcC-------C
Confidence 445678899999999999999999999999999999998 55689999999999999999999999999954 3
Q ss_pred cceEEEcCCCCchhhhhhcccC-CCCcEEEEecchhHHHHHHHHHhhchhhhhh---hcccccccccCCCccCCCeEEEe
Q 020507 86 KKQILSLGAGFDTTYFQLQAEG-KAPHLYVELDFIEVTSKKAALIETHGELKDK---VGVTASISQAKGEVLGDNYKLLP 161 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~-~~~~~~~EvD~p~vi~~K~~~l~~~~~l~~~---lg~~~~~~~~~~~~~~~~~~~v~ 161 (325)
++||||||||+||++|||...+ ...+.|||||||+++++|..++.+.|.++-+ .+++ ....+.+.+++.+|++++
T Consensus 88 ~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD-~~~~s~~~l~s~~Y~~~g 166 (335)
T KOG2918|consen 88 KKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDED-VVDLSGTDLHSGRYHLIG 166 (335)
T ss_pred ceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhcccccc-ccccCcceeccCceeeec
Confidence 8999999999999999998875 5789999999999999999666555442222 2222 344556689999999999
Q ss_pred cccCCchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCceEEEeecCCCCCHHHHHHHHHHHhcC
Q 020507 162 VDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRG 241 (325)
Q Consensus 162 ~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~s~i~~d~i~p~d~fg~~m~~~l~~~g 241 (325)
|||+|.+.+.+.|...|+|.+.|||||+||||+||+++++..||+|+++.|+++.+|+|||++|+|+||++|.+||+++|
T Consensus 167 ~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~a~fv~YEQi~~~D~Fg~vM~~nlk~r~ 246 (335)
T KOG2918|consen 167 CDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFENAHFVNYEQINPNDRFGKVMLANLKRRG 246 (335)
T ss_pred cchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCcccEEEEeccCCCChHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcCCCCHHHHHHHHHhCCCcchhhccHHHHHcCCCCHHHHhHhhhccCCchhhHHHHHHHHHhhhccc
Q 020507 242 CALLGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFINPQERRRSTIVLLMQSMMPWGCLGILAFQKTKS 314 (325)
Q Consensus 242 ~~l~g~~~y~t~~~~~~r~~~~Gw~~~~~~d~~~~y~~~l~~~er~ri~~lE~fDE~Ee~~l~~~~~~~~~~~ 314 (325)
+||+|+..|+|+++|.+||.++||+.+.+.||+++|+.++|.+||+|+++||+|||+|||.+++.||..++-+
T Consensus 247 ~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm~ei~n~~lp~~Ek~rie~lE~lDE~Eel~~l~~HYcL~~A~ 319 (335)
T KOG2918|consen 247 CPLHGLETYNSIESQRSRFLKAGWEYVIAVDMNEIYNFSLPEAEKKRIESLEPLDELEELHLLCQHYCLCHAT 319 (335)
T ss_pred CCCchhhhcccHHHHHHHHHhcCCceeehhhHHHHHHhhCCHHHHHHHhhcccchhHHHHHHHHHHheeeeee
Confidence 9999999999999999999999999999999999999899999999999999999999999999999998744
No 2
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=100.00 E-value=8.4e-43 Score=323.14 Aligned_cols=230 Identities=19% Similarity=0.247 Sum_probs=189.9
Q ss_pred hHHhHHHHHhhh--cccCCCCCCcHhHHHhhcCCCC----C--------------CcccccchhHHHHHHHHHHHHHHhc
Q 020507 16 QATNDDASASKL--SCVKKGYMKDDYIHLFVRRPVR----R--------------SPIINRGYFARWAALRRLLYQFLDC 75 (325)
Q Consensus 16 ~~Ta~~a~~~Ra--s~~~~gy~~Dp~a~~fv~~~~r----~--------------~p~inrg~~~R~~~id~~i~~Fl~~ 75 (325)
..||+.++++|| +.+++++|+||||..|+++... . .|.+..+..+|++.||+.+.+|+.+
T Consensus 1 ~~Tal~~a~~RA~es~r~~~l~~Dp~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rtr~~D~~i~~~~~~ 80 (260)
T TIGR00027 1 GRTALGVAAARAIETQRPDRLFRDPYAAAFLGAAGRAAMPLDGLLRADAGAYDGLLGGFADFIAVRTRFFDDFLLAAVAA 80 (260)
T ss_pred ChHHHHHHHHHHHHhCCCCcCcCChHHHHHhchhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 369999999999 7778899999999999976432 0 1123345578999999999999986
Q ss_pred CCCCCCcCCCcceEEEcCCCCchhhhhhcccCCCCcEEEEecchhHHHHHHHHHhhchhhhhhhcccccccccCCCccCC
Q 020507 76 GSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGD 155 (325)
Q Consensus 76 ~~~~~~~~~~~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~ 155 (325)
+ ..||||||||||||+|||.++ .+++|||||+|+|++.|+++|.++. ..+++
T Consensus 81 g---------~~qvV~LGaGlDTr~~Rl~~~--~~~~~~EvD~P~v~~~K~~~l~~~~-----------------~~~~~ 132 (260)
T TIGR00027 81 G---------IRQVVILGAGLDTRAYRLPWP--DGTRVFEVDQPAVLAFKEKVLAELG-----------------AEPPA 132 (260)
T ss_pred C---------CcEEEEeCCccccHHHhcCCC--CCCeEEECCChHHHHHHHHHHHHcC-----------------CCCCC
Confidence 4 479999999999999999987 5799999999999999999999741 22478
Q ss_pred CeEEEecccCCchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCceEEEeecCCCCCH-----HH
Q 020507 156 NYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDA-----FG 230 (325)
Q Consensus 156 ~~~~v~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~s~i~~d~i~p~d~-----fg 230 (325)
++++|++||+ . +|.+.|..+|||++.||+||+|||+|||+++++++||+.|++.+++||.++||++.+.+. ++
T Consensus 133 ~~~~v~~Dl~-~-~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~ 210 (260)
T TIGR00027 133 HRRAVPVDLR-Q-DWPAALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMR 210 (260)
T ss_pred ceEEeccCch-h-hHHHHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHH
Confidence 9999999999 3 799999999999999999999999999999999999999999998999999999987432 33
Q ss_pred HHHHHHHH-hcCCCCCCCcCCCCHHHHHHHHHhCCCcchhhccHHHHHcC
Q 020507 231 QQMIRNLE-SRGCALLGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYST 279 (325)
Q Consensus 231 ~~m~~~l~-~~g~~l~g~~~y~t~~~~~~r~~~~Gw~~~~~~d~~~~y~~ 279 (325)
+.|.+... ..+.+|.. ..++++..++|.++||+..+. +..++-.+
T Consensus 211 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~Gw~~~~~-~~~e~~~~ 256 (260)
T TIGR00027 211 APVYHAARGVDGSGLVF---GIDRADVAEWLAERGWRASEH-TPGELARR 256 (260)
T ss_pred HHHHHhhhccccccccc---CCChhhHHHHHHHCCCeeecC-CHHHHHHH
Confidence 44444332 45666652 235788999999999998876 66655444
No 3
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=7.1e-41 Score=315.01 Aligned_cols=239 Identities=22% Similarity=0.267 Sum_probs=190.5
Q ss_pred CCcCccchhhHHhHHHHHhhh--cccCCCCCCcHhHHHhhcCCC---CCC--ccc--------cc--chhHHHHHHHHHH
Q 020507 7 DSQSNKAAVQATNDDASASKL--SCVKKGYMKDDYIHLFVRRPV---RRS--PII--------NR--GYFARWAALRRLL 69 (325)
Q Consensus 7 ~~~~~d~~V~~Ta~~a~~~Ra--s~~~~gy~~Dp~a~~fv~~~~---r~~--p~i--------nr--g~~~R~~~id~~i 69 (325)
+.....++|..|+..++++|| |..+.+|++||||..|++... .+. |.. ++ +..+|++.+|+.+
T Consensus 6 ~~~~~~~~v~~Tal~~a~~RA~es~~~~~L~~D~~A~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~Rtr~fD~~~ 85 (297)
T COG3315 6 DSWDKLSGVGKTALIVAAARALESRKPDPLIDDPFAEELVRQGDDDFTKLADPALALGGGDFLERMNFLAARTRYFDDFV 85 (297)
T ss_pred ccchhhcchhHHHHHHHHHHHHHhcCCCcccCCHHHHHHHhhhHHHHHHhcChhhhcccchhhhhhhhHHHHHHHHHHHH
Confidence 344556789999999999999 777788999999999998531 111 221 12 4678999999999
Q ss_pred HHHHhcCCCCCCcCCCcceEEEcCCCCchhhhhhcccCCCCcEEEEecchhHHHHHHHHHhhchhhhhhhcccccccccC
Q 020507 70 YQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAK 149 (325)
Q Consensus 70 ~~Fl~~~~~~~~~~~~~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~ 149 (325)
.+|++++ .+|||+||||||||+|||+++ .+++|||||+|+|+++|+++|+++.
T Consensus 86 ~~~~~~g---------~~qvViLgaGLDTRayRl~~~--~~~~vfEvD~Pevi~~K~~~l~e~~---------------- 138 (297)
T COG3315 86 RAALDAG---------IRQVVILGAGLDTRAYRLDWP--KGTRVFEVDLPEVIEFKKKLLAERG---------------- 138 (297)
T ss_pred HHHHHhc---------ccEEEEeccccccceeecCCC--CCCeEEECCCcHHHHHHHHHhhhcC----------------
Confidence 9999987 389999999999999999998 6899999999999999999999852
Q ss_pred CCccCCCeEEEecccCCchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCceEEEeecCCCCCHH
Q 020507 150 GEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAF 229 (325)
Q Consensus 150 ~~~~~~~~~~v~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~s~i~~d~i~p~d~f 229 (325)
..+++++++|++||++. +|.+.|.++|||++.||+||+|||||||++++++++|+.|++++++||.+++++..+....
T Consensus 139 -~~~~~~~~~Va~Dl~~~-dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~ 216 (297)
T COG3315 139 -ATPPAHRRLVAVDLRED-DWPQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLR 216 (297)
T ss_pred -CCCCceEEEEecccccc-chHHHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHH
Confidence 23478999999999974 7999999999999999999999999999999999999999999999999999986433222
Q ss_pred HHH--HHHH------HHhcCCCCCCCcCCCCHHHHHHHHHhCCCcchhhccHHHHH
Q 020507 230 GQQ--MIRN------LESRGCALLGINATPTLLAKEKLFLDQGWQQAVAWDMLRVY 277 (325)
Q Consensus 230 g~~--m~~~------l~~~g~~l~g~~~y~t~~~~~~r~~~~Gw~~~~~~d~~~~y 277 (325)
.+. +... -...|.++.+ .....+...++.++||.........+.+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~e~~~~---~~~~~e~~~~l~~~g~~~~~~~~~~~~~ 269 (297)
T COG3315 217 DRLRRPAARKTMRGEDLDRGELVYF---GDDPAEIETWLAERGWRSTLNRTTEDLA 269 (297)
T ss_pred hcccchhhhhhccccccccccceec---cCCHHHHHHHHHhcCEEEEecCCcHHHH
Confidence 111 1111 1123444432 2346788999999999977764334333
No 4
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=100.00 E-value=1.2e-38 Score=280.98 Aligned_cols=165 Identities=32% Similarity=0.487 Sum_probs=138.1
Q ss_pred hHHHHHhhh--cccCCCCCCcHhHHHhhcCCCC----------------CCcccccchhHHHHHHHHHHHHHHhcCCCCC
Q 020507 19 NDDASASKL--SCVKKGYMKDDYIHLFVRRPVR----------------RSPIINRGYFARWAALRRLLYQFLDCGSDGD 80 (325)
Q Consensus 19 a~~a~~~Ra--s~~~~gy~~Dp~a~~fv~~~~r----------------~~p~inrg~~~R~~~id~~i~~Fl~~~~~~~ 80 (325)
|+.++++|| |.++++||+||||..|+++... +.|.+++|+++|+.+||+.+++|+..+++
T Consensus 1 al~~~~~RA~~s~~~~~~~~Dp~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rt~~iD~~v~~~i~~~~~-- 78 (183)
T PF04072_consen 1 ALITAAARAAESKRPDPYFEDPYAARLLSKLGRAWLKDYDFSKFNAASARDPGINRGYAARTRYIDDAVREFIAKHPG-- 78 (183)
T ss_dssp HHHHHHHHHHHHHHHHCSSHTCCCCHHHHCCCCHCC-B--SGHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred CHHHHHHHHHHhCCCCcccCCHhHHHHHcccccccccchhhhcccccccccHHHHhHHHHHHHHHHHHHHHhhccCCC--
Confidence 567888888 5667999999999999987621 25778999999999999999999998874
Q ss_pred CcCCCcceEEEcCCCCchhhhhhcccCCCCcEEEEecchhHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEE
Q 020507 81 KKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLL 160 (325)
Q Consensus 81 ~~~~~~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v 160 (325)
.+|||+||||||||+|||.++ .++++|||||+|+|++.|+++|++.... .++++++|
T Consensus 79 -----~~qvV~LGaGlDTr~~Rl~~~-~~~~~~~evD~p~v~~~K~~~l~~~~~~-----------------~~~~~~~v 135 (183)
T PF04072_consen 79 -----ARQVVNLGAGLDTRAYRLDNP-AGGVRWFEVDLPEVIALKRRLLPESGAR-----------------PPANYRYV 135 (183)
T ss_dssp -----ESEEEEET-TT--HHHHHHHT-TTTEEEEEEE-HHHHHHHHHHHHHTHHH-----------------HHEESSEE
T ss_pred -----CcEEEEcCCCCCchHHHhhcc-ccceEEEEeCCHHHHHHHHHHHHhCccc-----------------CCcceeEE
Confidence 569999999999999999997 2489999999999999999999986321 13567889
Q ss_pred ecccCCchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHH
Q 020507 161 PVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWAS 209 (325)
Q Consensus 161 ~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la 209 (325)
++||++ ++|.+.|.++|++++.||+||+|||++||+++++.++|++|+
T Consensus 136 ~~Dl~~-~~~~~~L~~~g~~~~~ptl~i~Egvl~Yl~~~~~~~ll~~ia 183 (183)
T PF04072_consen 136 PADLRD-DSWIDALPKAGFDPDRPTLFIAEGVLMYLSPEQVDALLRAIA 183 (183)
T ss_dssp ES-TTS-HHHHHHHHHCTT-TTSEEEEEEESSGGGS-HHHHHHHHHHH-
T ss_pred eccccc-hhhHHHHHHhCCCCCCCeEEEEcchhhcCCHHHHHHHHHHhC
Confidence 999999 589999999999999999999999999999999999999985
No 5
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.63 E-value=3.1e-07 Score=85.16 Aligned_cols=159 Identities=16% Similarity=0.170 Sum_probs=90.7
Q ss_pred CcceEEEcCCCCchhh--hhhcccCCCCcEEEEecc-hhHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEe
Q 020507 85 TKKQILSLGAGFDTTY--FQLQAEGKAPHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLP 161 (325)
Q Consensus 85 ~~~QVV~LGAGlDTr~--~RL~~~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~ 161 (325)
|+.|++-||||+=|.. ..+.....+..+++=||. |-|++.=+.+|..++ ..+-.+|.
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~--------------------~g~t~~v~ 127 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP--------------------RGRTAYVQ 127 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T--------------------TSEEEEEE
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC--------------------CccEEEEe
Confidence 3899999999997752 222111023444444444 466666666776531 23488999
Q ss_pred cccCCchhHHHHH-HhCCCCCCCCEEEEeecccccCCh-HHHHHHHHHHHhcCCCceEEEeecCCCCC-H-HHHHHHHHH
Q 020507 162 VDLRDIQMLNEVI-NLANMDPSLPTFIIAECVLIYLDP-DSSRAIVGWASKTFSTAVFFLYEQIHPDD-A-FGQQMIRNL 237 (325)
Q Consensus 162 ~DL~~~~~l~~~L-~~~g~d~~~PTl~i~Egvl~YL~~-~~~~~ll~~la~~f~~~s~i~~d~i~p~d-~-fg~~m~~~l 237 (325)
+|+++++.+.+.. ...-+|.++|+-+++=+||.+++. ++...+++.+.+..++||+++......+. + ..+.+.+.+
T Consensus 128 aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~ 207 (267)
T PF04672_consen 128 ADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVY 207 (267)
T ss_dssp --TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHH
T ss_pred CCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHH
Confidence 9999987665522 123589999999999999999977 88999999999999999999988876542 2 224456667
Q ss_pred HhcCCCCCCCcCCCCHHHHHHHHHhCCCcchh
Q 020507 238 ESRGCALLGINATPTLLAKEKLFLDQGWQQAV 269 (325)
Q Consensus 238 ~~~g~~l~g~~~y~t~~~~~~r~~~~Gw~~~~ 269 (325)
.+.+.++. ..|.++..+.|. ||+.++
T Consensus 208 ~~~~~~~~----~Rs~~ei~~~f~--g~elve 233 (267)
T PF04672_consen 208 AQAGSPGR----PRSREEIAAFFD--GLELVE 233 (267)
T ss_dssp HHCCS--------B-HHHHHHCCT--TSEE-T
T ss_pred HcCCCCce----ecCHHHHHHHcC--CCccCC
Confidence 77787764 445666666555 899776
No 6
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=97.78 E-value=0.004 Score=56.72 Aligned_cols=153 Identities=14% Similarity=0.204 Sum_probs=98.8
Q ss_pred ceEEEcCCCCchhhhhhcccC-CCCcEEEEecc-hhHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEeccc
Q 020507 87 KQILSLGAGFDTTYFQLQAEG-KAPHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (325)
Q Consensus 87 ~QVV~LGAGlDTr~~RL~~~~-~~~~~~~EvD~-p~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL 164 (325)
..|+-+|||-=.....+.... .++..++=+|. |++++.=++.+.+.. ...+.+++..|+
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~-------------------~~~~v~~~~~d~ 115 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH-------------------SEIPVEILCNDI 115 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC-------------------CCCCeEEEECCh
Confidence 579999999876655543320 14678888888 666655555554421 134678888888
Q ss_pred CCchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCC-ceEEEeecCCCCCHHH-HHHHHH---H-H
Q 020507 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFST-AVFFLYEQIHPDDAFG-QQMIRN---L-E 238 (325)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~-~s~i~~d~i~p~d~fg-~~m~~~---l-~ 238 (325)
.+.. +. ...++++-.++.|+++++...+++.+.+...+ |.+++.|.+.+.+... ..+... + .
T Consensus 116 ~~~~----------~~--~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~ 183 (239)
T TIGR00740 116 RHVE----------IK--NASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKR 183 (239)
T ss_pred hhCC----------CC--CCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHH
Confidence 7631 11 13478888899999998889999999887765 6677788776654332 222211 1 1
Q ss_pred hcCCC----------CCCCcCCCCHHHHHHHHHhCCCcchhh
Q 020507 239 SRGCA----------LLGINATPTLLAKEKLFLDQGWQQAVA 270 (325)
Q Consensus 239 ~~g~~----------l~g~~~y~t~~~~~~r~~~~Gw~~~~~ 270 (325)
..|.. +.+.....|++++.+.++++||..++.
T Consensus 184 ~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGF~~~~~ 225 (239)
T TIGR00740 184 ANGYSELEISQKRTALENVMRTDSIETHKARLKNVGFSHVEL 225 (239)
T ss_pred HcCCCHHHHHHHHHHHhccCCCCCHHHHHHHHHHcCCchHHH
Confidence 12321 223445568899999999999987664
No 7
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=97.35 E-value=0.025 Score=52.02 Aligned_cols=154 Identities=14% Similarity=0.267 Sum_probs=95.6
Q ss_pred cceEEEcCCCCchhhhhhccc-CCCCcEEEEecc-hhHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEecc
Q 020507 86 KKQILSLGAGFDTTYFQLQAE-GKAPHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVD 163 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~-~~~~~~~~EvD~-p~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~D 163 (325)
...|+-+|||.=.....+... ..++.+++=||. |++++.=++.+... + ...+..++..|
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~-------~------------~~~~v~~~~~d 117 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY-------K------------APTPVDVIEGD 117 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc-------C------------CCCCeEEEeCC
Confidence 357999999976654444321 024678888888 66665545555432 1 13467888888
Q ss_pred cCCchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCC-ceEEEeecCCCCC-HHHHHHHHH----H
Q 020507 164 LRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFST-AVFFLYEQIHPDD-AFGQQMIRN----L 237 (325)
Q Consensus 164 L~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~-~s~i~~d~i~p~d-~fg~~m~~~----l 237 (325)
+.+.. + ...-++++=.++.++++++...+++.+.+...+ |.+++.|.+.+.+ ..+..+... .
T Consensus 118 ~~~~~----------~--~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~ 185 (247)
T PRK15451 118 IRDIA----------I--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFK 185 (247)
T ss_pred hhhCC----------C--CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHH
Confidence 76531 1 112367777888999998889999999988765 5677788776543 333322221 1
Q ss_pred HhcCCC----------CCCCcCCCCHHHHHHHHHhCCCcchhh
Q 020507 238 ESRGCA----------LLGINATPTLLAKEKLFLDQGWQQAVA 270 (325)
Q Consensus 238 ~~~g~~----------l~g~~~y~t~~~~~~r~~~~Gw~~~~~ 270 (325)
...|.+ +.++....|.+.+.++++++||+.+.+
T Consensus 186 ~~~g~s~~ei~~~~~~~~~~~~~~~~~~~~~~L~~aGF~~v~~ 228 (247)
T PRK15451 186 RANGYSELEISQKRSMLENVMLTDSVETHKARLHKAGFEHSEL 228 (247)
T ss_pred HHcCCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHcCchhHHH
Confidence 223332 112333347788888888888887664
No 8
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=97.13 E-value=0.027 Score=53.31 Aligned_cols=150 Identities=10% Similarity=0.137 Sum_probs=100.3
Q ss_pred cceEEEcCCCCchhhhhhcccCCCCcEEEEecchhHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEecccC
Q 020507 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL~ 165 (325)
...|+-+|||.=+....+... .++.++.=+|.|++++.=++.+.+. | ..++++++..|+.
T Consensus 150 ~~~vlDiG~G~G~~~~~~~~~-~p~~~~~~~D~~~~~~~a~~~~~~~-------g------------l~~rv~~~~~d~~ 209 (306)
T TIGR02716 150 VKKMIDVGGGIGDISAAMLKH-FPELDSTILNLPGAIDLVNENAAEK-------G------------VADRMRGIAVDIY 209 (306)
T ss_pred CCEEEEeCCchhHHHHHHHHH-CCCCEEEEEecHHHHHHHHHHHHhC-------C------------ccceEEEEecCcc
Confidence 468999999999888777665 3677888889999988765555542 1 1467899999987
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCC-ceEEEeecCCCCC---HHHHHHHHHHHhcC
Q 020507 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFST-AVFFLYEQIHPDD---AFGQQMIRNLESRG 241 (325)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~-~s~i~~d~i~p~d---~fg~~m~~~l~~~g 241 (325)
+. .+. +. -+++.-.++...+++....+++.+.+..++ |-+++.|.+.+.+ .+. .+...+...+
T Consensus 210 ~~-~~~------~~-----D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~-~~~~~~~~~~ 276 (306)
T TIGR02716 210 KE-SYP------EA-----DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFD-YLSHYILGAG 276 (306)
T ss_pred CC-CCC------CC-----CEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhh-HHHHHHHHcc
Confidence 63 221 11 344445677778888899999999887765 5667888765431 222 2222222222
Q ss_pred CCCCCCcCCCCHHHHHHHHHhCCCcchh
Q 020507 242 CALLGINATPTLLAKEKLFLDQGWQQAV 269 (325)
Q Consensus 242 ~~l~g~~~y~t~~~~~~r~~~~Gw~~~~ 269 (325)
.++ ++..+.+.++..+.|.+.||+.+.
T Consensus 277 ~~~-~~~~~~~~~e~~~ll~~aGf~~v~ 303 (306)
T TIGR02716 277 MPF-SVLGFKEQARYKEILESLGYKDVT 303 (306)
T ss_pred ccc-ccccCCCHHHHHHHHHHcCCCeeE
Confidence 221 233445578899999999998765
No 9
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=97.02 E-value=0.019 Score=53.37 Aligned_cols=156 Identities=10% Similarity=0.115 Sum_probs=96.3
Q ss_pred cceEEEcCCCCchhhhhhcccCCCCcEEEEecchhHH-HHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEeccc
Q 020507 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVT-SKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi-~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL 164 (325)
...|+-+|||.-.....|... .++.++=+|..+.+ +.-++.... ..+..++..|+
T Consensus 53 ~~~VLDiGcG~G~~a~~la~~--~~~~v~giD~s~~~~~~a~~~~~~----------------------~~~i~~~~~D~ 108 (263)
T PTZ00098 53 NSKVLDIGSGLGGGCKYINEK--YGAHVHGVDICEKMVNIAKLRNSD----------------------KNKIEFEANDI 108 (263)
T ss_pred CCEEEEEcCCCChhhHHHHhh--cCCEEEEEECCHHHHHHHHHHcCc----------------------CCceEEEECCc
Confidence 357999999987766666543 35677777774433 322221111 24677777887
Q ss_pred CCchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCc-eEEEeecCCCCC-HHHHHHHHHHHhcCC
Q 020507 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTA-VFFLYEQIHPDD-AFGQQMIRNLESRGC 242 (325)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~-s~i~~d~i~p~d-~fg~~m~~~l~~~g~ 242 (325)
.+. . +....=-++++-.++.+++.++...+++.+.+...+| .+++.|...... .....+...+..++.
T Consensus 109 ~~~-~---------~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~ 178 (263)
T PTZ00098 109 LKK-D---------FPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKY 178 (263)
T ss_pred ccC-C---------CCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCC
Confidence 652 1 2112223666666667888778899999999988765 555566544331 122222222333332
Q ss_pred CCCCCcCCCCHHHHHHHHHhCCCcchhhccHHHHHcCCC
Q 020507 243 ALLGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFI 281 (325)
Q Consensus 243 ~l~g~~~y~t~~~~~~r~~~~Gw~~~~~~d~~~~y~~~l 281 (325)
.+.++++..+.++++||+.+...|+.+.|.+++
T Consensus 179 ------~~~~~~~~~~~l~~aGF~~v~~~d~~~~~~~~~ 211 (263)
T PTZ00098 179 ------TLIPIQEYGDLIKSCNFQNVVAKDISDYWLELL 211 (263)
T ss_pred ------CCCCHHHHHHHHHHCCCCeeeEEeCcHHHHHHH
Confidence 345778899999999999998877776665543
No 10
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.85 E-value=0.022 Score=52.51 Aligned_cols=191 Identities=17% Similarity=0.190 Sum_probs=110.1
Q ss_pred cHhHHHhhcCCCCCCcccccchhHHHHHHHHHHHHHHhcCCCCCCcCCCcceEEEcCCCCchhhhhhcccCCCCcEEEEe
Q 020507 37 DDYIHLFVRRPVRRSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVEL 116 (325)
Q Consensus 37 Dp~a~~fv~~~~r~~p~inrg~~~R~~~id~~i~~Fl~~~~~~~~~~~~~~QVV~LGAGlDTr~~RL~~~~~~~~~~~Ev 116 (325)
|..|..|.+...- . ..| .+|...+..-+..+++..+. ....|+-+|||.-.....|... +..++=+
T Consensus 7 d~~a~~f~~~~y~-~---~~g-~~r~~~~~~~~~~~l~~l~~------~~~~vLDiGcG~G~~a~~la~~---g~~v~~v 72 (255)
T PRK11036 7 DDIAEKFSRNIYG-T---TKG-QIRQAILWQDLDRLLAELPP------RPLRVLDAGGGEGQTAIKLAEL---GHQVILC 72 (255)
T ss_pred hhHHHHHHHhccC-C---Ccc-HHHHHHHHHHHHHHHHhcCC------CCCEEEEeCCCchHHHHHHHHc---CCEEEEE
Confidence 5566667654310 1 112 24555555555666665542 1468999999999888888765 4567777
Q ss_pred cc-hhHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEecccCCchhHHHHHHhCCCCCCCCEEEEeeccccc
Q 020507 117 DF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIY 195 (325)
Q Consensus 117 D~-p~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~Y 195 (325)
|. |++++.=++.+.+. | ..++++++.+|..+. .... . ..--++++-.|+.|
T Consensus 73 D~s~~~l~~a~~~~~~~-------g------------~~~~v~~~~~d~~~l---~~~~-~-----~~fD~V~~~~vl~~ 124 (255)
T PRK11036 73 DLSAEMIQRAKQAAEAK-------G------------VSDNMQFIHCAAQDI---AQHL-E-----TPVDLILFHAVLEW 124 (255)
T ss_pred ECCHHHHHHHHHHHHhc-------C------------CccceEEEEcCHHHH---hhhc-C-----CCCCEEEehhHHHh
Confidence 77 45555444444432 1 135678888887653 1111 1 22347778888999
Q ss_pred CChHHHHHHHHHHHhcCCCceEEEeecCCCCCHHH-HHHHHHHH--hcCCCC----C-CCcCCCCHHHHHHHHHhCCCcc
Q 020507 196 LDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFG-QQMIRNLE--SRGCAL----L-GINATPTLLAKEKLFLDQGWQQ 267 (325)
Q Consensus 196 L~~~~~~~ll~~la~~f~~~s~i~~d~i~p~d~fg-~~m~~~l~--~~g~~l----~-g~~~y~t~~~~~~r~~~~Gw~~ 267 (325)
++.. ..+++.+.+...+|..++.-..++..... ..+..++. ..+.+- . ....+.++++..+.+.++||+.
T Consensus 125 ~~~~--~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~aGf~~ 202 (255)
T PRK11036 125 VADP--KSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEAGWQI 202 (255)
T ss_pred hCCH--HHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHCCCeE
Confidence 9654 47888888888777666544444432111 11111221 112110 0 1123457889999999999998
Q ss_pred hhhc
Q 020507 268 AVAW 271 (325)
Q Consensus 268 ~~~~ 271 (325)
+...
T Consensus 203 ~~~~ 206 (255)
T PRK11036 203 MGKT 206 (255)
T ss_pred eeee
Confidence 7643
No 11
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=96.70 E-value=0.017 Score=55.34 Aligned_cols=151 Identities=13% Similarity=0.165 Sum_probs=89.8
Q ss_pred cceEEEcCCCCchhhhhhcccCCCCcEEEEecchhHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEecccC
Q 020507 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL~ 165 (325)
...|+-+|||.-...+++... ....++-||.-..+-...+.+++. ++ ...+.+++.+|+.
T Consensus 122 g~~VLDvGCG~G~~~~~~~~~--g~~~v~GiDpS~~ml~q~~~~~~~------~~------------~~~~v~~~~~~ie 181 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRMLGH--GAKSLVGIDPTVLFLCQFEAVRKL------LD------------NDKRAILEPLGIE 181 (314)
T ss_pred CCEEEEeccCCcHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHHHHH------hc------------cCCCeEEEECCHH
Confidence 368999999998878887765 234688899766543332333321 11 0245677777765
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCceEEEeec-CCCCCHHHHHHH--HHHHhcCC
Q 020507 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQ-IHPDDAFGQQMI--RNLESRGC 242 (325)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~s~i~~d~-i~p~d~fg~~m~--~~l~~~g~ 242 (325)
+... ...|| ++++.||+.++. .....|+.+.+...+|..++++. +...+.. ..+. ....+
T Consensus 182 ~lp~------~~~FD-----~V~s~gvL~H~~--dp~~~L~el~r~LkpGG~Lvletl~i~g~~~-~~l~p~~ry~k--- 244 (314)
T TIGR00452 182 QLHE------LYAFD-----TVFSMGVLYHRK--SPLEHLKQLKHQLVIKGELVLETLVIDGDLN-TVLVPKDRYAK--- 244 (314)
T ss_pred HCCC------CCCcC-----EEEEcchhhccC--CHHHHHHHHHHhcCCCCEEEEEEEEecCccc-cccCchHHHHh---
Confidence 5321 01355 677788888874 33567888888787766555543 2221110 0000 01111
Q ss_pred CCCCCcCCCCHHHHHHHHHhCCCcchhhccHH
Q 020507 243 ALLGINATPTLLAKEKLFLDQGWQQAVAWDML 274 (325)
Q Consensus 243 ~l~g~~~y~t~~~~~~r~~~~Gw~~~~~~d~~ 274 (325)
+.++...+|.+...+.+.++||..+++.+..
T Consensus 245 -~~nv~flpS~~~L~~~L~~aGF~~V~i~~~~ 275 (314)
T TIGR00452 245 -MKNVYFIPSVSALKNWLEKVGFENFRILDVL 275 (314)
T ss_pred -ccccccCCCHHHHHHHHHHCCCeEEEEEecc
Confidence 2233345788899999999999998865543
No 12
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=96.52 E-value=0.19 Score=47.44 Aligned_cols=178 Identities=19% Similarity=0.212 Sum_probs=118.2
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCcCCCcceEEEcCCCCchhhhhhcccC-CCCcEEEEecc-hhHHHHHHHHHhhchhhh
Q 020507 59 FARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEG-KAPHLYVELDF-IEVTSKKAALIETHGELK 136 (325)
Q Consensus 59 ~~R~~~id~~i~~Fl~~~~~~~~~~~~~~QVV~LGAGlDTr~~RL~~~~-~~~~~~~EvD~-p~vi~~K~~~l~~~~~l~ 136 (325)
-.|-..+.++|.+-+..-.. ......||.+.||-=---+=..... .....+.=.|+ |..++.=+++|++..
T Consensus 113 R~Rk~~l~~~i~~ai~~L~~----~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~g--- 185 (311)
T PF12147_consen 113 RQRKVHLEELIRQAIARLRE----QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERG--- 185 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHh----cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcC---
Confidence 34677777777777665321 1136899999999632222222221 11245555666 466677777777641
Q ss_pred hhhcccccccccCCCccCCCeEEEecccCCchhHHHHHHhCCCCCCCCEEEEeecccccCChHH-HHHHHHHHHhcCCCc
Q 020507 137 DKVGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDS-SRAIVGWASKTFSTA 215 (325)
Q Consensus 137 ~~lg~~~~~~~~~~~~~~~~~~~v~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~-~~~ll~~la~~f~~~ 215 (325)
+ .+-.++...|..|.+++.. ++ -.|||.|.=|+.=|++..+ +...|+.++....+|
T Consensus 186 ---------------L-~~i~~f~~~dAfd~~~l~~------l~-p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pg 242 (311)
T PF12147_consen 186 ---------------L-EDIARFEQGDAFDRDSLAA------LD-PAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPG 242 (311)
T ss_pred ---------------C-ccceEEEecCCCCHhHhhc------cC-CCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCC
Confidence 1 3445888889888644332 32 4899999999999999966 788999999999999
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHh--cCCCCCCCcCCCCHHHHHHHHHhCCCcchh
Q 020507 216 VFFLYEQIHPDDAFGQQMIRNLES--RGCALLGINATPTLLAKEKLFLDQGWQQAV 269 (325)
Q Consensus 216 s~i~~d~i~p~d~fg~~m~~~l~~--~g~~l~g~~~y~t~~~~~~r~~~~Gw~~~~ 269 (325)
.+++|.- .|.++--++....|.+ -|.+|. ..+.|-.++-+.+..+||+...
T Consensus 243 G~lIyTg-QPwHPQle~IAr~LtsHr~g~~Wv--MRrRsq~EmD~Lv~~aGF~K~~ 295 (311)
T PF12147_consen 243 GYLIYTG-QPWHPQLEMIARVLTSHRDGKAWV--MRRRSQAEMDQLVEAAGFEKID 295 (311)
T ss_pred cEEEEcC-CCCCcchHHHHHHHhcccCCCceE--EEecCHHHHHHHHHHcCCchhh
Confidence 9999874 3443333434444543 457774 5667888888888999998654
No 13
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=96.38 E-value=0.11 Score=49.79 Aligned_cols=151 Identities=14% Similarity=0.185 Sum_probs=94.2
Q ss_pred ceEEEcCCCCchhhhhhcccCCCCcEEEEecchhHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEecccCC
Q 020507 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRD 166 (325)
Q Consensus 87 ~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL~~ 166 (325)
+.|+-+|||.=...+++... ....++-||....+-.+.+.+.+. .+ ...+.+++.+|+.+
T Consensus 124 ~~VLDIGCG~G~~~~~la~~--g~~~V~GiD~S~~~l~q~~a~~~~------~~------------~~~~i~~~~~d~e~ 183 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGA--GAKLVVGIDPSQLFLCQFEAVRKL------LG------------NDQRAHLLPLGIEQ 183 (322)
T ss_pred CEEEEeccCCcHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHHHHh------cC------------CCCCeEEEeCCHHH
Confidence 68999999999999998765 233588888766554443444331 11 03467888888866
Q ss_pred chhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCceEEEeecC-CCCCHHHHHH-HHHHHhcCCCC
Q 020507 167 IQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQI-HPDDAFGQQM-IRNLESRGCAL 244 (325)
Q Consensus 167 ~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~s~i~~d~i-~p~d~fg~~m-~~~l~~~g~~l 244 (325)
.. . ...|| ++++-||+.++. ....+|+.+.+...+|..++++.+ .+.+.....+ ..+..+ +
T Consensus 184 lp-~-----~~~FD-----~V~s~~vl~H~~--dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~----~ 246 (322)
T PRK15068 184 LP-A-----LKAFD-----TVFSMGVLYHRR--SPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAK----M 246 (322)
T ss_pred CC-C-----cCCcC-----EEEECChhhccC--CHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhc----C
Confidence 42 1 11344 667778888864 446788888888877766666643 2221100000 111111 2
Q ss_pred CCCcCCCCHHHHHHHHHhCCCcchhhccHH
Q 020507 245 LGINATPTLLAKEKLFLDQGWQQAVAWDML 274 (325)
Q Consensus 245 ~g~~~y~t~~~~~~r~~~~Gw~~~~~~d~~ 274 (325)
.++...+|.+...+.+.++||+.+.+.+..
T Consensus 247 ~~~~~lps~~~l~~~L~~aGF~~i~~~~~~ 276 (322)
T PRK15068 247 RNVYFIPSVPALKNWLERAGFKDVRIVDVS 276 (322)
T ss_pred ccceeCCCHHHHHHHHHHcCCceEEEEeCC
Confidence 333445788999999999999988876543
No 14
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=96.13 E-value=0.027 Score=51.25 Aligned_cols=101 Identities=19% Similarity=0.237 Sum_probs=78.5
Q ss_pred cceEEEcCCCCchhhhhhcccCCCCcEEEEecchhHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEecccC
Q 020507 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL~ 165 (325)
..+||-+|+|.=.....+... ++++++.-+|+|+|++.=++ .+++.+++.|+.
T Consensus 101 ~~~vvDvGGG~G~~~~~l~~~-~P~l~~~v~Dlp~v~~~~~~--------------------------~~rv~~~~gd~f 153 (241)
T PF00891_consen 101 FKTVVDVGGGSGHFAIALARA-YPNLRATVFDLPEVIEQAKE--------------------------ADRVEFVPGDFF 153 (241)
T ss_dssp SSEEEEET-TTSHHHHHHHHH-STTSEEEEEE-HHHHCCHHH--------------------------TTTEEEEES-TT
T ss_pred ccEEEeccCcchHHHHHHHHH-CCCCcceeeccHhhhhcccc--------------------------ccccccccccHH
Confidence 578999999999998888766 58999999999999765444 268999999998
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCc---eEEEeecCCCC
Q 020507 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTA---VFFLYEQIHPD 226 (325)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~---s~i~~d~i~p~ 226 (325)
++ + .. -=+++.=-||...+++++..||+.++...++| ..++.|++.+.
T Consensus 154 ~~--~---------P~--~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~ 204 (241)
T PF00891_consen 154 DP--L---------PV--ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPD 204 (241)
T ss_dssp TC--C---------SS--ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECS
T ss_pred hh--h---------cc--ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCC
Confidence 63 1 11 23777788889999999999999999988754 67889999765
No 15
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=95.81 E-value=0.35 Score=43.24 Aligned_cols=149 Identities=15% Similarity=0.162 Sum_probs=84.1
Q ss_pred cceEEEcCCCCchhhhhhcccCCCCcEEEEecc-hhHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEeccc
Q 020507 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL 164 (325)
...|+-+|||.=.....+... +..++=+|. |+++..=++.+... ....+..++.+|+
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~-------------------~~~~~i~~~~~d~ 113 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGR-------------------DVAGNVEFEVNDL 113 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhc-------------------CCCCceEEEECCh
Confidence 468999999998777666654 334555554 33443333333321 0124677777777
Q ss_pred CCchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCceEEEeecCCCCCHHHHHHHHHHHhcCCCC
Q 020507 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRGCAL 244 (325)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~s~i~~d~i~p~d~fg~~m~~~l~~~g~~l 244 (325)
.+.. ..|| ++++-.++.|++++....+++.+.+...++..+.+-...+....-..+...+. +.+-
T Consensus 114 ~~~~--------~~fD-----~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~ 178 (219)
T TIGR02021 114 LSLC--------GEFD-----IVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFP--GSSR 178 (219)
T ss_pred hhCC--------CCcC-----EEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCc--Cccc
Confidence 6531 1233 55655566888888888899998886666655554321111011111111111 1111
Q ss_pred CCCcCCCCHHHHHHHHHhCCCcchhhc
Q 020507 245 LGINATPTLLAKEKLFLDQGWQQAVAW 271 (325)
Q Consensus 245 ~g~~~y~t~~~~~~r~~~~Gw~~~~~~ 271 (325)
.....+.++++..+.+.++||++....
T Consensus 179 ~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 205 (219)
T TIGR02021 179 ATSAYLHPMTDLERALGELGWKIVREG 205 (219)
T ss_pred ccceEEecHHHHHHHHHHcCceeeeee
Confidence 111234578899999999999987653
No 16
>PLN03075 nicotianamine synthase; Provisional
Probab=95.70 E-value=0.13 Score=48.85 Aligned_cols=152 Identities=13% Similarity=0.290 Sum_probs=90.1
Q ss_pred CCCCcHhHHHhhcCCCCCCccc---ccchhHHHHHHHHHHHHHHhcCCCCCCcCCCcceEEEcCCC-CchhhhhhcccCC
Q 020507 33 GYMKDDYIHLFVRRPVRRSPII---NRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAG-FDTTYFQLQAEGK 108 (325)
Q Consensus 33 gy~~Dp~a~~fv~~~~r~~p~i---nrg~~~R~~~id~~i~~Fl~~~~~~~~~~~~~~QVV~LGAG-lDTr~~RL~~~~~ 108 (325)
+.++=.||..+.... .|+- +.-||-+..-+..+--+++...... +.++|+-+||| .=-.+.-+.....
T Consensus 76 ~~lE~~~a~~i~~~~---~p~~~l~~Fpy~~nY~~L~~lE~~~L~~~~~~-----~p~~VldIGcGpgpltaiilaa~~~ 147 (296)
T PLN03075 76 GLLEAHFSTILGSFD---NPLDHLNLFPYYNNYLKLSKLEFDLLSQHVNG-----VPTKVAFVGSGPLPLTSIVLAKHHL 147 (296)
T ss_pred HHHHHHHHHHHhcCC---cHHHHhhcCCchHHHHHHHHHHHHHHHHhhcC-----CCCEEEEECCCCcHHHHHHHHHhcC
Confidence 455666777666432 2221 1234444444444444555544321 26889999999 4223444432212
Q ss_pred CCcEEEEecch-hHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEecccCCchhHHHHHHhCCCCCCCCEEE
Q 020507 109 APHLYVELDFI-EVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFI 187 (325)
Q Consensus 109 ~~~~~~EvD~p-~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL~~~~~l~~~L~~~g~d~~~PTl~ 187 (325)
++.++.-+|.- +.++.=++.+.+.+. + .++..++-.|+.+...+ + ..|| .+|
T Consensus 148 p~~~~~giD~d~~ai~~Ar~~~~~~~g-----------------L-~~rV~F~~~Da~~~~~~---l--~~FD----lVF 200 (296)
T PLN03075 148 PTTSFHNFDIDPSANDVARRLVSSDPD-----------------L-SKRMFFHTADVMDVTES---L--KEYD----VVF 200 (296)
T ss_pred CCCEEEEEeCCHHHHHHHHHHhhhccC-----------------c-cCCcEEEECchhhcccc---c--CCcC----EEE
Confidence 45566666664 333333333432111 1 56789999998763111 1 1465 777
Q ss_pred EeecccccCChHHHHHHHHHHHhcCCCceEEEee
Q 020507 188 IAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYE 221 (325)
Q Consensus 188 i~Egvl~YL~~~~~~~ll~~la~~f~~~s~i~~d 221 (325)
+. ++.|++.+.-.++++.+.+...+|+.+++-
T Consensus 201 ~~--ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr 232 (296)
T PLN03075 201 LA--ALVGMDKEEKVKVIEHLGKHMAPGALLMLR 232 (296)
T ss_pred Ee--cccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence 77 999999999999999999999998888875
No 17
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=95.41 E-value=0.83 Score=40.95 Aligned_cols=153 Identities=11% Similarity=0.067 Sum_probs=84.3
Q ss_pred ceEEEcCCCCchhhhhhcccCCCCcEEEEecc-hhHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEecccC
Q 020507 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (325)
Q Consensus 87 ~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL~ 165 (325)
..|+-+|||.=.....+.....+...++=+|. |+.++.-++.+... ..+++.++..|..
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~--------------------~~~~v~~~~~d~~ 106 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDA--------------------GLHNVELVHGNAM 106 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhc--------------------CCCceEEEEechh
Confidence 57999999987766666543113456666666 45554444444331 1246777877876
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCc-eEEEeecCCCCCHHHHHHHHH--------
Q 020507 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTA-VFFLYEQIHPDDAFGQQMIRN-------- 236 (325)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~-s~i~~d~i~p~d~fg~~m~~~-------- 236 (325)
+.. + ....+| ++++-.++-+++. ..++++.+.+...+| .+++.|...++...-+.....
T Consensus 107 ~~~-~----~~~~fD-----~V~~~~~l~~~~~--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ 174 (231)
T TIGR02752 107 ELP-F----DDNSFD-----YVTIGFGLRNVPD--YMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPL 174 (231)
T ss_pred cCC-C----CCCCcc-----EEEEecccccCCC--HHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHH
Confidence 531 1 111243 3444445556543 357787777766654 556666655543221111100
Q ss_pred HHhc--------CCCCCCCcCCCCHHHHHHHHHhCCCcchhhc
Q 020507 237 LESR--------GCALLGINATPTLLAKEKLFLDQGWQQAVAW 271 (325)
Q Consensus 237 l~~~--------g~~l~g~~~y~t~~~~~~r~~~~Gw~~~~~~ 271 (325)
+... +.-..++..|++.++..+.+.++||+.+...
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~ 217 (231)
T TIGR02752 175 FGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDVEVK 217 (231)
T ss_pred hhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEE
Confidence 0000 0000134567889999999999999977643
No 18
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=95.32 E-value=0.54 Score=47.25 Aligned_cols=153 Identities=12% Similarity=0.089 Sum_probs=92.7
Q ss_pred cceEEEcCCCCchhhhhhcccCCCCcEEEEecchhHHHHHHH-HHhhchhhhhhhcccccccccCCCccCCCeEEEeccc
Q 020507 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAA-LIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~-~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL 164 (325)
...|+-+|||.=.....|... .+..++=+|....+-...+ .... ...+..++..|+
T Consensus 267 ~~~vLDiGcG~G~~~~~la~~--~~~~v~gvDiS~~~l~~A~~~~~~---------------------~~~~v~~~~~d~ 323 (475)
T PLN02336 267 GQKVLDVGCGIGGGDFYMAEN--FDVHVVGIDLSVNMISFALERAIG---------------------RKCSVEFEVADC 323 (475)
T ss_pred CCEEEEEeccCCHHHHHHHHh--cCCEEEEEECCHHHHHHHHHHhhc---------------------CCCceEEEEcCc
Confidence 357999999997776666654 3566777777532222111 1111 034677788887
Q ss_pred CCchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCceEEE-eecCCCCCHHHHHHHHHHHhcCCC
Q 020507 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFL-YEQIHPDDAFGQQMIRNLESRGCA 243 (325)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~s~i~-~d~i~p~d~fg~~m~~~l~~~g~~ 243 (325)
.+. . +..+.=-++++-+++.+++. ...+++.+.+...+|..++ .|...........+...+...|..
T Consensus 324 ~~~-~---------~~~~~fD~I~s~~~l~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~ 391 (475)
T PLN02336 324 TKK-T---------YPDNSFDVIYSRDTILHIQD--KPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYD 391 (475)
T ss_pred ccC-C---------CCCCCEEEEEECCcccccCC--HHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCC
Confidence 663 1 11122347888888888864 4578888888887765544 444332111112222334444433
Q ss_pred CCCCcCCCCHHHHHHHHHhCCCcchhhccHHHHHcC
Q 020507 244 LLGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYST 279 (325)
Q Consensus 244 l~g~~~y~t~~~~~~r~~~~Gw~~~~~~d~~~~y~~ 279 (325)
+++.++..+.+.++||..+...|+.+-|..
T Consensus 392 ------~~~~~~~~~~l~~aGF~~i~~~d~~~~~~~ 421 (475)
T PLN02336 392 ------LHDVQAYGQMLKDAGFDDVIAEDRTDQFLQ 421 (475)
T ss_pred ------CCCHHHHHHHHHHCCCeeeeeecchHHHHH
Confidence 356778889999999999887776665554
No 19
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=95.24 E-value=0.7 Score=41.25 Aligned_cols=150 Identities=14% Similarity=0.125 Sum_probs=84.1
Q ss_pred cceEEEcCCCCchhhhhhcccCCCCcEEEEecc-hhHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEeccc
Q 020507 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL 164 (325)
...|+-+|||.=.....|... ...++=+|. +++++.-++.+... + ...+.+++..|+
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~-------~------------~~~~i~~~~~d~ 121 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEA-------G------------LAGNITFEVGDL 121 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhc-------C------------CccCcEEEEcCc
Confidence 357999999987776666554 234556665 33333333333321 0 024677777775
Q ss_pred CCchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCceEEEeecCCCCCHHHHHHHHHHHhcCCCC
Q 020507 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRGCAL 244 (325)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~s~i~~d~i~p~d~fg~~m~~~l~~~g~~l 244 (325)
... ...|| ++++-.++.+++.+....+++.+.+..+++..+.+....+...+-+.+.+.+.....
T Consensus 122 ~~~--------~~~fD-----~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~-- 186 (230)
T PRK07580 122 ESL--------LGRFD-----TVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFTFAPYTPLLALLHWIGGLFPGPSR-- 186 (230)
T ss_pred hhc--------cCCcC-----EEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEECCccHHHHHHHHhccccCCccC--
Confidence 321 11344 566667778889899999999998866655555554322211111111111111000
Q ss_pred CCCcCCCCHHHHHHHHHhCCCcchhhcc
Q 020507 245 LGINATPTLLAKEKLFLDQGWQQAVAWD 272 (325)
Q Consensus 245 ~g~~~y~t~~~~~~r~~~~Gw~~~~~~d 272 (325)
..-..+.+.++..+.+.++||+......
T Consensus 187 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 214 (230)
T PRK07580 187 TTRIYPHREKGIRRALAAAGFKVVRTER 214 (230)
T ss_pred CCCccccCHHHHHHHHHHCCCceEeeee
Confidence 0111234667788889999999877543
No 20
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=94.82 E-value=0.55 Score=45.51 Aligned_cols=146 Identities=13% Similarity=0.095 Sum_probs=85.3
Q ss_pred ceEEEcCCCCchhhhhhcccCCCCcEEEEecchhHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEecccCC
Q 020507 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRD 166 (325)
Q Consensus 87 ~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL~~ 166 (325)
..|+-||||.=.....+... .+...++=+|..+.+-.+.+.... ..+..++..|+.+
T Consensus 115 ~~VLDLGcGtG~~~l~La~~-~~~~~VtgVD~S~~mL~~A~~k~~----------------------~~~i~~i~gD~e~ 171 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKH-VDAKNVTILDQSPHQLAKAKQKEP----------------------LKECKIIEGDAED 171 (340)
T ss_pred CEEEEEecCCcHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHhhh----------------------ccCCeEEeccHHh
Confidence 57999999986655555432 123566667774333222221111 1245566767654
Q ss_pred chhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCc-eEEEeecCCCCCHHHHHHHHHHHhcCCCCC
Q 020507 167 IQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTA-VFFLYEQIHPDDAFGQQMIRNLESRGCALL 245 (325)
Q Consensus 167 ~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~-s~i~~d~i~p~d~fg~~m~~~l~~~g~~l~ 245 (325)
. ++..+.--++++-+++.|++.. ..+|+.+.+...+| .+++.+.+.+.....+.+. .. +
T Consensus 172 l----------p~~~~sFDvVIs~~~L~~~~d~--~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~----~~---~- 231 (340)
T PLN02490 172 L----------PFPTDYADRYVSAGSIEYWPDP--QRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFA----DV---W- 231 (340)
T ss_pred C----------CCCCCceeEEEEcChhhhCCCH--HHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhh----hh---h-
Confidence 3 1222223467888888888754 46788888877665 4455566665422222111 10 1
Q ss_pred CCcCCCCHHHHHHHHHhCCCcchhhccHHHHH
Q 020507 246 GINATPTLLAKEKLFLDQGWQQAVAWDMLRVY 277 (325)
Q Consensus 246 g~~~y~t~~~~~~r~~~~Gw~~~~~~d~~~~y 277 (325)
..+++.++..+.+++.||+.++..+....|
T Consensus 232 --~~~~t~eEl~~lL~~aGF~~V~i~~i~~~~ 261 (340)
T PLN02490 232 --MLFPKEEEYIEWFTKAGFKDVKLKRIGPKW 261 (340)
T ss_pred --ccCCCHHHHHHHHHHCCCeEEEEEEcChhh
Confidence 124678889999999999988876655544
No 21
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=94.77 E-value=2.2 Score=39.47 Aligned_cols=158 Identities=19% Similarity=0.149 Sum_probs=89.5
Q ss_pred cceEEEcCCCCchhhhhhcccCCCCcEEEEecchh-HHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEeccc
Q 020507 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIE-VTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~-vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL 164 (325)
...|+-+|||.=.....|.....++..++-+|.-+ +++.=++...... .....+..++..|.
T Consensus 74 ~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~-----------------~~~~~~i~~~~~d~ 136 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKA-----------------KSCYKNIEWIEGDA 136 (261)
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhh-----------------hccCCCeEEEEccc
Confidence 35899999999776666654311345777888753 3332221111100 00134678888887
Q ss_pred CCchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCC-ceEEEeecCCCCCHHHHHHHHHHHh----
Q 020507 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFST-AVFFLYEQIHPDDAFGQQMIRNLES---- 239 (325)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~-~s~i~~d~i~p~d~fg~~m~~~l~~---- 239 (325)
.+.. +..+.--++++-.++..++ +..++++.+.+...+ |.+++.|...+...++..+.+.+-.
T Consensus 137 ~~lp----------~~~~sfD~V~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~ 204 (261)
T PLN02233 137 TDLP----------FDDCYFDAITMGYGLRNVV--DRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVV 204 (261)
T ss_pred ccCC----------CCCCCEeEEEEecccccCC--CHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhh
Confidence 6641 2111222444444555554 456778888887766 5566778777766665443322111
Q ss_pred -c----CCC-----C-CCCcCCCCHHHHHHHHHhCCCcchhhcc
Q 020507 240 -R----GCA-----L-LGINATPTLLAKEKLFLDQGWQQAVAWD 272 (325)
Q Consensus 240 -~----g~~-----l-~g~~~y~t~~~~~~r~~~~Gw~~~~~~d 272 (325)
. |.. + .++..+.+.++..+.++++||+.+...+
T Consensus 205 ~~~~~~~~~~~y~~l~~s~~~f~s~~el~~ll~~aGF~~~~~~~ 248 (261)
T PLN02233 205 PVATGYGLAKEYEYLKSSINEYLTGEELEKLALEAGFSSAKHYE 248 (261)
T ss_pred HHHHHhCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCEEEEEE
Confidence 0 100 0 1334578899999999999999776543
No 22
>PLN02244 tocopherol O-methyltransferase
Probab=94.70 E-value=1.8 Score=41.75 Aligned_cols=152 Identities=14% Similarity=0.110 Sum_probs=87.2
Q ss_pred cceEEEcCCCCchhhhhhcccCCCCcEEEEecchhHHHHHHHHH-hhchhhhhhhcccccccccCCCccCCCeEEEeccc
Q 020507 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALI-ETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~l-~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL 164 (325)
...|+-+|||.=.....|... .+..++=||..+.+..+.+.+ ... | ..++..++..|.
T Consensus 119 ~~~VLDiGCG~G~~~~~La~~--~g~~v~gvD~s~~~i~~a~~~~~~~-------g------------~~~~v~~~~~D~ 177 (340)
T PLN02244 119 PKRIVDVGCGIGGSSRYLARK--YGANVKGITLSPVQAARANALAAAQ-------G------------LSDKVSFQVADA 177 (340)
T ss_pred CCeEEEecCCCCHHHHHHHHh--cCCEEEEEECCHHHHHHHHHHHHhc-------C------------CCCceEEEEcCc
Confidence 468999999998877777654 256777777755444433332 221 1 135678888888
Q ss_pred CCchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCc-eEEEeecCCC----CC----HHHHHHHH
Q 020507 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTA-VFFLYEQIHP----DD----AFGQQMIR 235 (325)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~-s~i~~d~i~p----~d----~fg~~m~~ 235 (325)
.+. .+ ....|| ++++-.++.+++. ..++++.+.+...+| .+++.+.... .. .....+..
T Consensus 178 ~~~-~~----~~~~FD-----~V~s~~~~~h~~d--~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~ 245 (340)
T PLN02244 178 LNQ-PF----EDGQFD-----LVWSMESGEHMPD--KRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLD 245 (340)
T ss_pred ccC-CC----CCCCcc-----EEEECCchhccCC--HHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHH
Confidence 764 11 112344 5555555666653 457788888877664 5555554321 11 11122222
Q ss_pred HHHhcCCCCCCCcCCCCHHHHHHHHHhCCCcchhhccHH
Q 020507 236 NLESRGCALLGINATPTLLAKEKLFLDQGWQQAVAWDML 274 (325)
Q Consensus 236 ~l~~~g~~l~g~~~y~t~~~~~~r~~~~Gw~~~~~~d~~ 274 (325)
.+... + .+..+.+.++..+.++++||..+...|..
T Consensus 246 ~i~~~---~-~~p~~~s~~~~~~~l~~aGf~~v~~~d~s 280 (340)
T PLN02244 246 KICAA---Y-YLPAWCSTSDYVKLAESLGLQDIKTEDWS 280 (340)
T ss_pred HHHhh---c-cCCCCCCHHHHHHHHHHCCCCeeEeeeCc
Confidence 22111 1 11134578889999999999988765443
No 23
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=94.60 E-value=0.27 Score=43.76 Aligned_cols=104 Identities=18% Similarity=0.251 Sum_probs=69.8
Q ss_pred cceEEEcCCCCchhhhhhcccCCCCcEEEEecchhHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEecccC
Q 020507 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL~ 165 (325)
.++++-||||-==-+.-|... +..+.=+|.-++.-.|.+.+.+.. .-..+..-+||+
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~--------------------~l~i~~~~~Dl~ 87 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEE--------------------GLDIRTRVADLN 87 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHT--------------------T-TEEEEE-BGC
T ss_pred CCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhc--------------------CceeEEEEecch
Confidence 579999999985557777766 456666666665555555555431 223777788998
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCceEEEeecC
Q 020507 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQI 223 (325)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~s~i~~d~i 223 (325)
+. .+.+ .+ -++++-+|++||+++...++++.+.+...+|.+.+++..
T Consensus 88 ~~-~~~~-----~y-----D~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 88 DF-DFPE-----EY-----DFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp CB-S-TT-----TE-----EEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hc-cccC-----Cc-----CEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 75 3321 23 378889999999999999999999987777777666543
No 24
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=94.60 E-value=0.031 Score=53.88 Aligned_cols=189 Identities=12% Similarity=0.076 Sum_probs=103.6
Q ss_pred cceEEEcCC--CCchhhhhhcccCCCCcEEEEecchhHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEecc
Q 020507 86 KKQILSLGA--GFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVD 163 (325)
Q Consensus 86 ~~QVV~LGA--GlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~D 163 (325)
...|+-||| |-|..=|.-... ....-+||+...+-+.+.+. .+.. +-... ...-..-...++.+|
T Consensus 63 ~~~VLDl~CGkGGDL~Kw~~~~i--~~~vg~Dis~~si~ea~~Ry-~~~~---~~~~~-------~~~~~~f~a~f~~~D 129 (331)
T PF03291_consen 63 GLTVLDLCCGKGGDLQKWQKAKI--KHYVGIDISEESIEEARERY-KQLK---KRNNS-------KQYRFDFIAEFIAAD 129 (331)
T ss_dssp T-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHH-HHHH---TSTT--------HTSEECCEEEEEEST
T ss_pred CCeEEEecCCCchhHHHHHhcCC--CEEEEEeCCHHHHHHHHHHH-HHhc---ccccc-------ccccccchhheeccc
Confidence 579999999 589998877654 45555666666766666655 2210 00000 000001223567777
Q ss_pred cCCchhHHHHHHhCCCCCCCCEEEEeecccccC--ChHHHHHHHHHHHhcCCCceEEEeecCCCCCHHHHHHHHHHHh--
Q 020507 164 LRDIQMLNEVINLANMDPSLPTFIIAECVLIYL--DPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLES-- 239 (325)
Q Consensus 164 L~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL--~~~~~~~ll~~la~~f~~~s~i~~d~i~p~d~fg~~m~~~l~~-- 239 (325)
.... .+.+.+... ...==++-+...+.|. +++.++.+|+.+++.+.+|.+++...+. +..+.+.|..
T Consensus 130 ~f~~-~l~~~~~~~---~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d-----~~~i~~~l~~~~ 200 (331)
T PF03291_consen 130 CFSE-SLREKLPPR---SRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD-----SDEIVKRLREKK 200 (331)
T ss_dssp TCCS-HHHCTSSST---TS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE------HHHHHCCHHC-E
T ss_pred cccc-hhhhhcccc---CCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC-----HHHHHHHHHhhc
Confidence 7653 454443221 0111377778888886 7788999999999999887766654432 2233333322
Q ss_pred -------------------------cCCC----CC-CC---cCCC-CHHHHHHHHHhCCCcchhhccHHHHHcCCC----
Q 020507 240 -------------------------RGCA----LL-GI---NATP-TLLAKEKLFLDQGWQQAVAWDMLRVYSTFI---- 281 (325)
Q Consensus 240 -------------------------~g~~----l~-g~---~~y~-t~~~~~~r~~~~Gw~~~~~~d~~~~y~~~l---- 281 (325)
.|.. |. .+ .+|- ..+...+.++++|+..+...+..++|....
T Consensus 201 ~~~~~~~~gN~~y~I~f~~~~~~~~fG~~Y~F~L~~~v~~~~EYlV~~~~~~~la~eyGLeLV~~~~F~ef~~e~~~~~~ 280 (331)
T PF03291_consen 201 SNSEKKKFGNSVYSIEFDSDDFFPPFGAKYDFYLEDAVDDCPEYLVPFDFFVKLAKEYGLELVEKKNFHEFYEEEKNKYE 280 (331)
T ss_dssp EECCCSCSETSSEEEEESCCSS--CTTEEEEEEETTCSSCEEEE---HHHHHHHHHHTTEEEEEEEEHHHHHHHHCCCCH
T ss_pred ccccccccCCccEEEEecccCCCCCCCcEEEEEecCcCCCCceEEeeHHHHHHHHHHcCCEEEEeCChHHHHHHhccCch
Confidence 0111 11 11 1122 235667778999999999999999988433
Q ss_pred CHHHHhHhhhccCCc
Q 020507 282 NPQERRRSTIVLLMQ 296 (325)
Q Consensus 282 ~~~er~ri~~lE~fD 296 (325)
......++..||..+
T Consensus 281 ~~~l~~~~~~l~~~~ 295 (331)
T PF03291_consen 281 KRSLLERMKALEKRP 295 (331)
T ss_dssp CHHHHHCHGGG--SH
T ss_pred hhHHHHHHHhhcCCC
Confidence 233456666776653
No 25
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=94.59 E-value=0.67 Score=42.39 Aligned_cols=154 Identities=12% Similarity=0.129 Sum_probs=62.1
Q ss_pred cceEEEcCCCCchhhhhhcccCCCCcEEEEecch-hHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEeccc
Q 020507 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFI-EVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p-~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL 164 (325)
...|+-+|||.=.....|.....++..++=+|+. ++++.=++.+.+.. ..+..++.+|.
T Consensus 48 g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~--------------------~~~i~~v~~da 107 (233)
T PF01209_consen 48 GDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG--------------------LQNIEFVQGDA 107 (233)
T ss_dssp --EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT----------------------SEEEEE-BT
T ss_pred CCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC--------------------CCCeeEEEcCH
Confidence 3589999999987777775431145688899985 55554444454421 24889999998
Q ss_pred CCchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCC-CceEEEeecCCCCCHHHHHHHHHH------
Q 020507 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFS-TAVFFLYEQIHPDDAFGQQMIRNL------ 237 (325)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~-~~s~i~~d~i~p~d~fg~~m~~~l------ 237 (325)
.+.. + .+.-|| .++++= .+-.++. ..+.++-+.+... +|.+++.|.-.|.....+...+-.
T Consensus 108 ~~lp-~----~d~sfD----~v~~~f-glrn~~d--~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~ilP 175 (233)
T PF01209_consen 108 EDLP-F----PDNSFD----AVTCSF-GLRNFPD--RERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYILP 175 (233)
T ss_dssp TB---S-----TT-EE----EEEEES--GGG-SS--HHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH-------
T ss_pred HHhc-C----CCCcee----EEEHHh-hHHhhCC--HHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeeccccc
Confidence 8752 2 122343 344343 3444442 3456677766664 467788998888754332221110
Q ss_pred ------HhcCCC---C-CCCcCCCCHHHHHHHHHhCCCcchhhc
Q 020507 238 ------ESRGCA---L-LGINATPTLLAKEKLFLDQGWQQAVAW 271 (325)
Q Consensus 238 ------~~~g~~---l-~g~~~y~t~~~~~~r~~~~Gw~~~~~~ 271 (325)
.....+ | .++..|++.++..+.++++||+.+...
T Consensus 176 ~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~~ 219 (233)
T PF01209_consen 176 LIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVEYR 219 (233)
T ss_dssp --------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccc
Confidence 100011 2 278889999999999999999977653
No 26
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=94.54 E-value=1.2 Score=39.30 Aligned_cols=106 Identities=17% Similarity=0.280 Sum_probs=67.5
Q ss_pred cceEEEcCCCCchhhhhhcccCCCCcEEEEecc-hhHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEeccc
Q 020507 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL 164 (325)
...|+-+|||.=..+..|... +..+.=+|. |+.++.=++.+... + ..+.+.+..|+
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~-------~-------------~~~v~~~~~d~ 87 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAE-------N-------------LDNLHTAVVDL 87 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHc-------C-------------CCcceEEecCh
Confidence 357999999987766667654 345666666 44444333333331 0 13456667777
Q ss_pred CCchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCceE-EEeecCCC
Q 020507 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVF-FLYEQIHP 225 (325)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~s~-i~~d~i~p 225 (325)
.+. .+ . ..|| ++++-.++.|++++....+++.+.+...+|.. ++.+.+.+
T Consensus 88 ~~~-~~----~-~~fD-----~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~ 138 (197)
T PRK11207 88 NNL-TF----D-GEYD-----FILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDT 138 (197)
T ss_pred hhC-Cc----C-CCcC-----EEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecC
Confidence 653 22 1 1244 66677888999999999999999998877655 45555544
No 27
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=94.35 E-value=0.89 Score=40.62 Aligned_cols=103 Identities=18% Similarity=0.223 Sum_probs=64.1
Q ss_pred cceEEEcCCCCchhhhhhcccCCCCcEEEEecchh-HHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEeccc
Q 020507 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIE-VTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~-vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL 164 (325)
...|+-+|||.=.....|... .++..++=||.-+ .++.-++.+ .+..++..|+
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~-~~~~~v~giDiS~~~l~~A~~~~-------------------------~~~~~~~~d~ 97 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRL-LPFKHIYGVEINEYAVEKAKAYL-------------------------PNINIIQGSL 97 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHh-CCCCeEEEEECCHHHHHHHHhhC-------------------------CCCcEEEeec
Confidence 457999999997766666443 1355677777643 333221111 1123445565
Q ss_pred CCchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCceEEEeecCCCC
Q 020507 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPD 226 (325)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~s~i~~d~i~p~ 226 (325)
.++ +..+.=-++++-+|+.+++++...++++.+.+.. ++-.++.|..+|.
T Consensus 98 ~~~-----------~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~-~~~v~i~e~~~~~ 147 (204)
T TIGR03587 98 FDP-----------FKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS-NRYILIAEYYNPS 147 (204)
T ss_pred cCC-----------CCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc-CcEEEEEEeeCCC
Confidence 541 1112234788999999999999999999998865 4466777766653
No 28
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=94.00 E-value=2.5 Score=40.66 Aligned_cols=174 Identities=10% Similarity=0.022 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcCCCcceEEEcCCCCchhhhhhcccCCCCcEEEEecchh-HHHHHHHHHhhchhhhhh
Q 020507 60 ARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIE-VTSKKAALIETHGELKDK 138 (325)
Q Consensus 60 ~R~~~id~~i~~Fl~~~~~~~~~~~~~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~-vi~~K~~~l~~~~~l~~~ 138 (325)
.|...|++.+.+.+.+..... .......|+-+|||-=.....|... +..++=||.-. .++.-++.....
T Consensus 107 ~R~~~i~~~l~~~~~~~~~~~-~~~~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~------ 176 (322)
T PLN02396 107 TRLAFIRSTLCRHFSKDPSSA-KPFEGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMD------ 176 (322)
T ss_pred HHHHHHHHHHHHHhccchhhc-cCCCCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhc------
Confidence 477777776666654322100 0001347999999988776666544 45677777643 333222222110
Q ss_pred hcccccccccCCCccCCCeEEEecccCCchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCceEE
Q 020507 139 VGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFF 218 (325)
Q Consensus 139 lg~~~~~~~~~~~~~~~~~~~v~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~s~i 218 (325)
+ ...+..++..|..+. . .....|| ++++-+|+..++.. ..+++.+.+...+|..+
T Consensus 177 -~------------~~~~i~~~~~dae~l---~--~~~~~FD-----~Vi~~~vLeHv~d~--~~~L~~l~r~LkPGG~l 231 (322)
T PLN02396 177 -P------------VTSTIEYLCTTAEKL---A--DEGRKFD-----AVLSLEVIEHVANP--AEFCKSLSALTIPNGAT 231 (322)
T ss_pred -C------------cccceeEEecCHHHh---h--hccCCCC-----EEEEhhHHHhcCCH--HHHHHHHHHHcCCCcEE
Confidence 0 024667777776442 1 1122355 55665688888754 57999999988887777
Q ss_pred EeecCCCCC-HHHHH-----HHHHHHhcCCCCCCCcCCCCHHHHHHHHHhCCCcchhh
Q 020507 219 LYEQIHPDD-AFGQQ-----MIRNLESRGCALLGINATPTLLAKEKLFLDQGWQQAVA 270 (325)
Q Consensus 219 ~~d~i~p~d-~fg~~-----m~~~l~~~g~~l~g~~~y~t~~~~~~r~~~~Gw~~~~~ 270 (325)
++..++... .+... ....+...|. .....+.++++..+.+.+.||+..+.
T Consensus 232 iist~nr~~~~~~~~i~~~eyi~~~lp~gt--h~~~~f~tp~eL~~lL~~aGf~i~~~ 287 (322)
T PLN02396 232 VLSTINRTMRAYASTIVGAEYILRWLPKGT--HQWSSFVTPEELSMILQRASVDVKEM 287 (322)
T ss_pred EEEECCcCHHHHHHhhhhHHHHHhcCCCCC--cCccCCCCHHHHHHHHHHcCCeEEEE
Confidence 777766542 12111 1111111111 11234678999999999999998775
No 29
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=93.90 E-value=0.2 Score=44.72 Aligned_cols=101 Identities=15% Similarity=0.250 Sum_probs=62.3
Q ss_pred cceEEEcCCCCchhhhhhcccCCCCcEEEEecchhHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEecccC
Q 020507 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL~ 165 (325)
-..++-+|||-=..--+|... ...+...|+.-..+ +.=++.+.. ..+...+-.|+.
T Consensus 44 y~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al-~~Ar~Rl~~----------------------~~~V~~~~~dvp 99 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRAL-ARARERLAG----------------------LPHVEWIQADVP 99 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHH-HHHHHHTTT-----------------------SSEEEEES-TT
T ss_pred cceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHH-HHHHHhcCC----------------------CCCeEEEECcCC
Confidence 578999999998888888765 33444445444444 444444443 367899999997
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEeecccccCCh-HHHHHHHHHHHhcCCCceEEEee
Q 020507 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDP-DSSRAIVGWASKTFSTAVFFLYE 221 (325)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~-~~~~~ll~~la~~f~~~s~i~~d 221 (325)
+. |. ...|| .++++| |++||++ ++...+++.+.+...+|..+++-
T Consensus 100 ~~--~P----~~~FD----LIV~SE-VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g 145 (201)
T PF05401_consen 100 EF--WP----EGRFD----LIVLSE-VLYYLDDAEDLRAALDRLVAALAPGGHLVFG 145 (201)
T ss_dssp T---------SS-EE----EEEEES--GGGSSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred CC--CC----CCCee----EEEEeh-HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 73 32 22466 566665 8999985 78999999998877665544443
No 30
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=93.85 E-value=6.6 Score=37.88 Aligned_cols=223 Identities=15% Similarity=0.164 Sum_probs=128.4
Q ss_pred CCccccc---chhHHHHHHHHHHHHHHhcCCCCCCcCCCcceEEEcCCCCchhhhhhcccCCCCcEEEEecchhHH-HHH
Q 020507 50 RSPIINR---GYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVT-SKK 125 (325)
Q Consensus 50 ~~p~inr---g~~~R~~~id~~i~~Fl~~~~~~~~~~~~~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi-~~K 125 (325)
++|+|+. .-|+-...|+ .|... ..|+..||||-=--..+.+.. .--.++-+|..+|- +.=
T Consensus 93 ~S~Ii~lRnfNNwIKs~LI~----~y~~~----------~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa 156 (389)
T KOG1975|consen 93 RSPIIFLRNFNNWIKSVLIN----LYTKR----------GDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQA 156 (389)
T ss_pred cCceeehhhhhHHHHHHHHH----HHhcc----------ccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHH
Confidence 5787752 2355554443 44433 357888999864444444333 33468888887652 222
Q ss_pred HHHHhhchhhhhhhcccccccccCCCccCCCeEEEecccCCchhHHHHHHhCCCCCCCC--EEEEeeccccc--CChHHH
Q 020507 126 AALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLP--TFIIAECVLIY--LDPDSS 201 (325)
Q Consensus 126 ~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL~~~~~l~~~L~~~g~d~~~P--Tl~i~Egvl~Y--L~~~~~ 201 (325)
++..+.....+.-. .=...++.+|-... .+.+.+. +..| -++-++.++.| -+.+++
T Consensus 157 ~~RYrdm~~r~~~~--------------~f~a~f~~~Dc~~~-~l~d~~e-----~~dp~fDivScQF~~HYaFetee~a 216 (389)
T KOG1975|consen 157 RKRYRDMKNRFKKF--------------IFTAVFIAADCFKE-RLMDLLE-----FKDPRFDIVSCQFAFHYAFETEESA 216 (389)
T ss_pred HHHHHHHHhhhhcc--------------cceeEEEEeccchh-HHHHhcc-----CCCCCcceeeeeeeEeeeeccHHHH
Confidence 23333321111100 12357888888773 6777652 2233 47778888877 478889
Q ss_pred HHHHHHHHhcCCCceEEEeecCCCCCHHHHHHHHHHHh----------------------cCCCCCCCc---------CC
Q 020507 202 RAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLES----------------------RGCALLGIN---------AT 250 (325)
Q Consensus 202 ~~ll~~la~~f~~~s~i~~d~i~p~d~fg~~m~~~l~~----------------------~g~~l~g~~---------~y 250 (325)
+-+|+.++..+++|.+.+-.. |+. ..++++|++ ...|+.|+. .+
T Consensus 217 r~~l~Nva~~LkpGG~FIgTi--Pds---d~Ii~rlr~~e~~~~gNdiykv~y~~~~~k~~~~p~fG~kY~F~LedaVdc 291 (389)
T KOG1975|consen 217 RIALRNVAKCLKPGGVFIGTI--PDS---DVIIKRLRAGEVERFGNDIYKVTYEIEFQKEFDVPPFGAKYRFHLEDAVDC 291 (389)
T ss_pred HHHHHHHHhhcCCCcEEEEec--CcH---HHHHHHHHhccchhhcceeeeEeeeeecccccCCCCccceEEEEcccccCC
Confidence 999999999998877655443 321 112222211 112433422 12
Q ss_pred C----CHHHHHHHHHhCCCcchhhccHHHHHcCCCCHH----HHhHhhhc--------cCCchhhHHHHHHHHHhhhcc
Q 020507 251 P----TLLAKEKLFLDQGWQQAVAWDMLRVYSTFINPQ----ERRRSTIV--------LLMQSMMPWGCLGILAFQKTK 313 (325)
Q Consensus 251 ~----t~~~~~~r~~~~Gw~~~~~~d~~~~y~~~l~~~----er~ri~~l--------E~fDE~Ee~~l~~~~~~~~~~ 313 (325)
| ........+.++|.+.+......++|+.++... -.+|+.-| |-=||+|.-......+.-+..
T Consensus 292 PEylV~F~~l~~lae~y~LeLv~~k~F~df~~e~~~~~~~~~Llkrm~gLe~~~~~~~~~~de~e~a~~~l~~~~~~~~ 370 (389)
T KOG1975|consen 292 PEYLVPFPTLVSLAEEYGLELVFVKPFADFYEEELKKNEERELLKRMEGLECYPNEEGESGDEYEAASFYLTFFPEKDR 370 (389)
T ss_pred cceeeehHHHHHHHHhcCcEEEEeccHHHHHHHhccccchhhHHHHHhcccCCCccccccchHHHHHHHHHhhhhhccc
Confidence 2 124456667889999999999999998877544 33444444 355777777766555554443
No 31
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=93.85 E-value=4.9 Score=38.52 Aligned_cols=146 Identities=14% Similarity=0.162 Sum_probs=83.0
Q ss_pred cceEEEcCCCCchhhhhhcccCCCCcEEEEecchhH-HHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEeccc
Q 020507 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEV-TSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~v-i~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL 164 (325)
...|+-+|||.=.....|... +..++=+|+.+. ++.=++..... +. ......+..++..|+
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~-------~~--------~~~~~~~~~f~~~Dl 206 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEA-------LA--------ALPPEVLPKFEANDL 206 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhc-------cc--------ccccccceEEEEcch
Confidence 368999999997777777654 456777777543 33322222221 00 000023455666666
Q ss_pred CCchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCceEEEeecCCCCCHHHHHHHHHHHhcCCCC
Q 020507 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRGCAL 244 (325)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~s~i~~d~i~p~d~fg~~m~~~l~~~g~~l 244 (325)
.+. ...|| ++++-.++.+++.+....+++.+....+++.++.+ .|.. ....+.+.+ |..+
T Consensus 207 ~~l--------~~~fD-----~Vv~~~vL~H~p~~~~~~ll~~l~~l~~g~liIs~---~p~~-~~~~~l~~~---g~~~ 266 (315)
T PLN02585 207 ESL--------SGKYD-----TVTCLDVLIHYPQDKADGMIAHLASLAEKRLIISF---APKT-LYYDILKRI---GELF 266 (315)
T ss_pred hhc--------CCCcC-----EEEEcCEEEecCHHHHHHHHHHHHhhcCCEEEEEe---CCcc-hHHHHHHHH---Hhhc
Confidence 431 11355 66666777788888888999999886554444433 2332 111222222 2223
Q ss_pred CCC----cC-CCCHHHHHHHHHhCCCcchh
Q 020507 245 LGI----NA-TPTLLAKEKLFLDQGWQQAV 269 (325)
Q Consensus 245 ~g~----~~-y~t~~~~~~r~~~~Gw~~~~ 269 (325)
.|. .. +.+.++..+.++++||++..
T Consensus 267 ~g~~~~~r~y~~s~eel~~lL~~AGf~v~~ 296 (315)
T PLN02585 267 PGPSKATRAYLHAEADVERALKKAGWKVAR 296 (315)
T ss_pred CCCCcCceeeeCCHHHHHHHHHHCCCEEEE
Confidence 221 12 33678888889999999765
No 32
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=93.20 E-value=3.6 Score=37.67 Aligned_cols=142 Identities=14% Similarity=0.130 Sum_probs=82.9
Q ss_pred cceEEEcCCCCchhhhhhcccCCCCcEEEEecchhHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEecccC
Q 020507 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL~ 165 (325)
..+|+-+|||.-.....|... .++.+++-+|.-+.+-.+.+ + .+..++.+|+.
T Consensus 30 ~~~vLDlGcG~G~~~~~l~~~-~p~~~v~gvD~s~~~~~~a~---~-----------------------~~~~~~~~d~~ 82 (255)
T PRK14103 30 ARRVVDLGCGPGNLTRYLARR-WPGAVIEALDSSPEMVAAAR---E-----------------------RGVDARTGDVR 82 (255)
T ss_pred CCEEEEEcCCCCHHHHHHHHH-CCCCEEEEEECCHHHHHHHH---h-----------------------cCCcEEEcChh
Confidence 468999999999887777654 24667888888433322221 1 12445666664
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCceEEEeecCCC-CCHHHHHHHHHHH------
Q 020507 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHP-DDAFGQQMIRNLE------ 238 (325)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~s~i~~d~i~p-~d~fg~~m~~~l~------ 238 (325)
+. . ....|| ++++-.++.+++. ...+++.+.+...+|..+++..... .......+ ..+.
T Consensus 83 ~~---~---~~~~fD-----~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-~~~~~~~~w~ 148 (255)
T PRK14103 83 DW---K---PKPDTD-----VVVSNAALQWVPE--HADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAV-RALARREPWA 148 (255)
T ss_pred hC---C---CCCCce-----EEEEehhhhhCCC--HHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHH-HHHhccCchh
Confidence 32 1 112354 7777888889863 4678888888787776666543221 11111211 1111
Q ss_pred h--cCCCCCCCcCCCCHHHHHHHHHhCCCcch
Q 020507 239 S--RGCALLGINATPTLLAKEKLFLDQGWQQA 268 (325)
Q Consensus 239 ~--~g~~l~g~~~y~t~~~~~~r~~~~Gw~~~ 268 (325)
. .+.++..-..+.+.+...+.++++||++.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~ 180 (255)
T PRK14103 149 KLLRDIPFRVGAVVQTPAGYAELLTDAGCKVD 180 (255)
T ss_pred HHhcccccccCcCCCCHHHHHHHHHhCCCeEE
Confidence 1 12222222234678899999999999743
No 33
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=93.12 E-value=1.7 Score=38.30 Aligned_cols=103 Identities=12% Similarity=0.134 Sum_probs=64.9
Q ss_pred cceEEEcCCCCchhhhhhcccCCCCcEEEEecc-hhHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEeccc
Q 020507 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL 164 (325)
...|+-+|||.-..+..|... +..++=+|. |..++.-++..... .-+.+...+|+
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~---------------------~~~v~~~~~d~ 86 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARE---------------------NLPLRTDAYDI 86 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHh---------------------CCCceeEeccc
Confidence 368999999998887777654 345566666 44444433333321 11244455565
Q ss_pred CCchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCceE-EEeecC
Q 020507 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVF-FLYEQI 223 (325)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~s~-i~~d~i 223 (325)
... . ++ ..--++++-.++.+++.+....+++.+.+...+|.. ++.+..
T Consensus 87 ~~~-~---------~~-~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~ 135 (195)
T TIGR00477 87 NAA-A---------LN-EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAM 135 (195)
T ss_pred hhc-c---------cc-CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEec
Confidence 432 1 11 123478888899999999999999999998877654 555543
No 34
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=93.05 E-value=2.6 Score=37.56 Aligned_cols=150 Identities=11% Similarity=0.096 Sum_probs=85.8
Q ss_pred eEEEcCCCCchhhhhhcccCCCCcEEEEecchh-HHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEecccCC
Q 020507 88 QILSLGAGFDTTYFQLQAEGKAPHLYVELDFIE-VTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRD 166 (325)
Q Consensus 88 QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~-vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL~~ 166 (325)
.|+-+|||.=.....+... .++..+.-+|... .++.=++.+... | ...+..++..|+.+
T Consensus 2 ~vLDiGcG~G~~~~~la~~-~~~~~v~gid~s~~~~~~a~~~~~~~-------g------------l~~~i~~~~~d~~~ 61 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAER-HPHLQLHGYTISPEQAEVGRERIRAL-------G------------LQGRIRIFYRDSAK 61 (224)
T ss_pred eEEEECCCCCHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHhc-------C------------CCcceEEEeccccc
Confidence 4889999987766666544 2456677777743 333333333321 1 14567888888754
Q ss_pred chhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCce-EEEeecCCCCCHHHHHHHHHHHhcCCCCC
Q 020507 167 IQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAV-FFLYEQIHPDDAFGQQMIRNLESRGCALL 245 (325)
Q Consensus 167 ~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~s-~i~~d~i~p~d~fg~~m~~~l~~~g~~l~ 245 (325)
. .+. ..|| ++++-.++..++. ...+++.+.+...+|. +++.+.+... .. ..+.+..
T Consensus 62 ~-~~~-----~~fD-----~I~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~--~~--------~~~~~~~ 118 (224)
T smart00828 62 D-PFP-----DTYD-----LVFGFEVIHHIKD--KMDLFSNISRHLKDGGHLVLADFIANL--LS--------AIEHEET 118 (224)
T ss_pred C-CCC-----CCCC-----EeehHHHHHhCCC--HHHHHHHHHHHcCCCCEEEEEEccccc--Cc--------ccccccc
Confidence 2 121 1354 5666566666643 5788999988776654 4445543211 00 0011111
Q ss_pred CCcCCCCHHHHHHHHHhCCCcchhhccHHHHHcCCC
Q 020507 246 GINATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFI 281 (325)
Q Consensus 246 g~~~y~t~~~~~~r~~~~Gw~~~~~~d~~~~y~~~l 281 (325)
...+++.++..+.+.+.||+.....++..-|..++
T Consensus 119 -~~~~~s~~~~~~~l~~~Gf~~~~~~~~~~~~~~~l 153 (224)
T smart00828 119 -TSYLVTREEWAELLARNNLRVVEGVDASLEIANFL 153 (224)
T ss_pred -ccccCCHHHHHHHHHHCCCeEEEeEECcHhHhhhc
Confidence 11256777888889999999988766655554433
No 35
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=92.86 E-value=0.35 Score=37.58 Aligned_cols=96 Identities=18% Similarity=0.248 Sum_probs=55.3
Q ss_pred EEEcCCCCchhhhhhcccC--CCCcEEEEecch-hHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEecccC
Q 020507 89 ILSLGAGFDTTYFQLQAEG--KAPHLYVELDFI-EVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (325)
Q Consensus 89 VV~LGAGlDTr~~RL~~~~--~~~~~~~EvD~p-~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL~ 165 (325)
|+-||||.=+....+.... .+..++.=||.- +.++.=++..... ..+.+++..|+.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~---------------------~~~~~~~~~D~~ 59 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED---------------------GPKVRFVQADAR 59 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT---------------------TTTSEEEESCTT
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc---------------------CCceEEEECCHh
Confidence 5678888755444433220 123677777764 3333222222211 236788999997
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEe-ecccccCChHHHHHHHHHHHhcCCCc
Q 020507 166 DIQMLNEVINLANMDPSLPTFIIA-ECVLIYLDPDSSRAIVGWASKTFSTA 215 (325)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~-Egvl~YL~~~~~~~ll~~la~~f~~~ 215 (325)
+. .. . + ...-++++ -+++.|+++++..++++.+++...+|
T Consensus 60 ~l---~~--~----~-~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pg 100 (101)
T PF13649_consen 60 DL---PF--S----D-GKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPG 100 (101)
T ss_dssp CH---HH--H----S-SSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEE
T ss_pred HC---cc--c----C-CCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCC
Confidence 73 21 1 1 13345555 77799999999999999999876543
No 36
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=92.66 E-value=3.2 Score=39.29 Aligned_cols=110 Identities=14% Similarity=0.086 Sum_probs=67.7
Q ss_pred cceEEEcCCCCchhhhhhcccCCCCcEEEEecchhH-HHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEeccc
Q 020507 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEV-TSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~v-i~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL 164 (325)
...||-||||.=...-.|........+++=||...- ++.=++.+.+. .+.-+...+..|+
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~-------------------~p~~~v~~i~gD~ 124 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAAD-------------------YPQLEVHGICADF 124 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhh-------------------CCCceEEEEEEcc
Confidence 367999999987655555443111467888888643 33333333321 1123466778899
Q ss_pred CCchhHHHHHHhCCCCCCCCEEEEeecc-cccCChHHHHHHHHHHHhcCCCceEEEe
Q 020507 165 RDIQMLNEVINLANMDPSLPTFIIAECV-LIYLDPDSSRAIVGWASKTFSTAVFFLY 220 (325)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~Egv-l~YL~~~~~~~ll~~la~~f~~~s~i~~ 220 (325)
.+...+.. .+. +.+.++++-|. +..+++++..++|+.+.+...+|..+++
T Consensus 125 ~~~~~~~~-----~~~-~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 125 TQPLALPP-----EPA-AGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred cchhhhhc-----ccc-cCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 87312211 122 34666777664 5568999999999999998887665553
No 37
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=92.57 E-value=4.4 Score=36.45 Aligned_cols=176 Identities=18% Similarity=0.179 Sum_probs=115.4
Q ss_pred HHHHHHHHHHhcCCCCCCcCCCcceEEEcCCCCchhhhhhcccCCCCcEEEEecchhHHHHHHH-HHhhchhhhhhhccc
Q 020507 64 ALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAA-LIETHGELKDKVGVT 142 (325)
Q Consensus 64 ~id~~i~~Fl~~~~~~~~~~~~~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~-~l~~~~~l~~~lg~~ 142 (325)
.|-+++++++.+.. ..|+-+|+|.=.-+--+... .+.++|.=-|..+....-.+ .+.... +
T Consensus 13 pIl~vL~~~l~~~~---------~~vLEiaSGtGqHa~~FA~~-lP~l~WqPSD~~~~~~~sI~a~~~~~~-~------- 74 (204)
T PF06080_consen 13 PILEVLKQYLPDSG---------TRVLEIASGTGQHAVYFAQA-LPHLTWQPSDPDDNLRPSIRAWIAEAG-L------- 74 (204)
T ss_pred HHHHHHHHHhCccC---------ceEEEEcCCccHHHHHHHHH-CCCCEEcCCCCChHHHhhHHHHHHhcC-C-------
Confidence 45567778876542 25999999987775555444 47899998888776532222 233210 0
Q ss_pred ccccccCCCccCCCeEEEecccCCchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCC-ceEEEee
Q 020507 143 ASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFST-AVFFLYE 221 (325)
Q Consensus 143 ~~~~~~~~~~~~~~~~~v~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~-~s~i~~d 221 (325)
+.-..-+..|+.+. .|.-.. .+++....--.+++==++-.++-+.+..|++..++..++ |.+++|-
T Consensus 75 -----------~Nv~~P~~lDv~~~-~w~~~~-~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YG 141 (204)
T PF06080_consen 75 -----------PNVRPPLALDVSAP-PWPWEL-PAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYG 141 (204)
T ss_pred -----------cccCCCeEeecCCC-CCcccc-ccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 12233467788874 343221 113344455677777888999999999999999998875 6778898
Q ss_pred cCCCCCHH---H-HHHHHHHHhcCCCCCCCcCCCCHHHHHHHHHhCCCcchhhccHH
Q 020507 222 QIHPDDAF---G-QQMIRNLESRGCALLGINATPTLLAKEKLFLDQGWQQAVAWDML 274 (325)
Q Consensus 222 ~i~p~d~f---g-~~m~~~l~~~g~~l~g~~~y~t~~~~~~r~~~~Gw~~~~~~d~~ 274 (325)
++.-+..+ + ...-..|+.+.-.| |+ .++++..+...++|+......+|-
T Consensus 142 PF~~~G~~ts~SN~~FD~sLr~rdp~~-Gi---RD~e~v~~lA~~~GL~l~~~~~MP 194 (204)
T PF06080_consen 142 PFNRDGKFTSESNAAFDASLRSRDPEW-GI---RDIEDVEALAAAHGLELEEDIDMP 194 (204)
T ss_pred CcccCCEeCCcHHHHHHHHHhcCCCCc-Cc---cCHHHHHHHHHHCCCccCcccccC
Confidence 87754211 1 33445677777554 55 457888888899999988877764
No 38
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=92.02 E-value=0.97 Score=43.06 Aligned_cols=152 Identities=14% Similarity=0.187 Sum_probs=97.7
Q ss_pred cceEEEcCCCCchhhhhhcccCCCCcEEEEecchhHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEecccC
Q 020507 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL~ 165 (325)
.+.|+-+|||-==-.||+... ..-.++=+|--...-..-+.+++ .+|. ....+.++.-+.
T Consensus 116 gk~VLDIGC~nGY~~frM~~~--GA~~ViGiDP~~lf~~QF~~i~~------~lg~------------~~~~~~lplgvE 175 (315)
T PF08003_consen 116 GKRVLDIGCNNGYYSFRMLGR--GAKSVIGIDPSPLFYLQFEAIKH------FLGQ------------DPPVFELPLGVE 175 (315)
T ss_pred CCEEEEecCCCcHHHHHHhhc--CCCEEEEECCChHHHHHHHHHHH------HhCC------------CccEEEcCcchh
Confidence 478999999988889999877 34457777765544444444554 2332 234566665444
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCceEEEeecCC-CCCHHHHHHHHHHHhcCCCC
Q 020507 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIH-PDDAFGQQMIRNLESRGCAL 244 (325)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~s~i~~d~i~-p~d~fg~~m~~~l~~~g~~l 244 (325)
+. .. + ..|| ++++-|||+.+.. --..|+.+.+...+|..+++|..- +.+. +..+. =..+-..|
T Consensus 176 ~L---p~-~--~~FD-----tVF~MGVLYHrr~--Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~-~~~L~--P~~rYa~m 239 (315)
T PF08003_consen 176 DL---PN-L--GAFD-----TVFSMGVLYHRRS--PLDHLKQLKDSLRPGGELVLETLVIDGDE-NTVLV--PEDRYAKM 239 (315)
T ss_pred hc---cc-c--CCcC-----EEEEeeehhccCC--HHHHHHHHHHhhCCCCEEEEEEeeecCCC-ceEEc--cCCcccCC
Confidence 43 22 2 2587 7889999999753 345566676666666667766543 2211 01000 12345556
Q ss_pred CCCcCCCCHHHHHHHHHhCCCcchhhccH
Q 020507 245 LGINATPTLLAKEKLFLDQGWQQAVAWDM 273 (325)
Q Consensus 245 ~g~~~y~t~~~~~~r~~~~Gw~~~~~~d~ 273 (325)
.++.--||+.....++.++||..+++.|.
T Consensus 240 ~nv~FiPs~~~L~~wl~r~gF~~v~~v~~ 268 (315)
T PF08003_consen 240 RNVWFIPSVAALKNWLERAGFKDVRCVDV 268 (315)
T ss_pred CceEEeCCHHHHHHHHHHcCCceEEEecC
Confidence 77777899999999999999999987654
No 39
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=91.80 E-value=4.2 Score=33.57 Aligned_cols=151 Identities=16% Similarity=0.109 Sum_probs=87.8
Q ss_pred HHHHHHHHHHhcCCCCCCcCCCcceEEEcCCCCchhhhhhcccCCCCcEEEEecchhHHHHHHHHHhhchhhhhhhcccc
Q 020507 64 ALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTA 143 (325)
Q Consensus 64 ~id~~i~~Fl~~~~~~~~~~~~~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~l~~~~~l~~~lg~~~ 143 (325)
.+.+.+.++...... ...|+-+|||.=....-|... +..++=+|.-+.+-.+ ..
T Consensus 8 ~~~~~~~~~~~~~~~-------~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~----~~------------ 61 (161)
T PF13489_consen 8 AYADLLERLLPRLKP-------GKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK----RN------------ 61 (161)
T ss_dssp CHHHHHHHHHTCTTT-------TSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH----TT------------
T ss_pred HHHHHHHHHhcccCC-------CCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh----hh------------
Confidence 344566677753222 579999999985444444333 3477777775444333 11
Q ss_pred cccccCCCccCCCeEEEecccCCchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCceEEEeecC
Q 020507 144 SISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQI 223 (325)
Q Consensus 144 ~~~~~~~~~~~~~~~~v~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~s~i~~d~i 223 (325)
......+..+. + ...+.--++++-.||.|++ ....+|+.+.+...+|..+++...
T Consensus 62 -------------~~~~~~~~~~~--~--------~~~~~fD~i~~~~~l~~~~--d~~~~l~~l~~~LkpgG~l~~~~~ 116 (161)
T PF13489_consen 62 -------------VVFDNFDAQDP--P--------FPDGSFDLIICNDVLEHLP--DPEEFLKELSRLLKPGGYLVISDP 116 (161)
T ss_dssp -------------SEEEEEECHTH--H--------CHSSSEEEEEEESSGGGSS--HHHHHHHHHHHCEEEEEEEEEEEE
T ss_pred -------------hhhhhhhhhhh--h--------ccccchhhHhhHHHHhhcc--cHHHHHHHHHHhcCCCCEEEEEEc
Confidence 01111111111 0 1122345888889999999 488999999998877666665554
Q ss_pred CCCCHHHHHHHHHHHhcCCCCC--CCcCCCCHHHHHHHHHhCCCcchh
Q 020507 224 HPDDAFGQQMIRNLESRGCALL--GINATPTLLAKEKLFLDQGWQQAV 269 (325)
Q Consensus 224 ~p~d~fg~~m~~~l~~~g~~l~--g~~~y~t~~~~~~r~~~~Gw~~~~ 269 (325)
.......+. +......-. +...|.+.++..+.++++||+.++
T Consensus 117 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 117 NRDDPSPRS----FLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp BTTSHHHHH----HHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred CCcchhhhH----HHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 433221121 222221111 233567889999999999998764
No 40
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=91.62 E-value=6.5 Score=36.22 Aligned_cols=149 Identities=13% Similarity=0.185 Sum_probs=79.8
Q ss_pred cceEEEcCCCCchhhhhhcccCCCCcEEEEecc-hhHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEeccc
Q 020507 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL 164 (325)
...|+.+|||.-...+.+.....+...++-+|. |+.++.=++.+... + ..+..++..|+
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~-------g-------------~~~v~~~~~d~ 137 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKA-------G-------------YTNVEFRLGEI 137 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHc-------C-------------CCCEEEEEcch
Confidence 357889999985544333221013456788887 44444433333321 1 23566777776
Q ss_pred CCchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCc-eEEEeecCCCCCHHHHHHHHHHHhcCCC
Q 020507 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTA-VFFLYEQIHPDDAFGQQMIRNLESRGCA 243 (325)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~-s~i~~d~i~p~d~fg~~m~~~l~~~g~~ 243 (325)
.+.. + ...+|| ++++.+++.+.+ +..++++.+.+...+| .+++.|.+.... ....+.+...-.+..
T Consensus 138 ~~l~-~----~~~~fD-----~Vi~~~v~~~~~--d~~~~l~~~~r~LkpGG~l~i~~~~~~~~-~~~~~~~~~~~~~~~ 204 (272)
T PRK11873 138 EALP-V----ADNSVD-----VIISNCVINLSP--DKERVFKEAFRVLKPGGRFAISDVVLRGE-LPEEIRNDAELYAGC 204 (272)
T ss_pred hhCC-C----CCCcee-----EEEEcCcccCCC--CHHHHHHHHHHHcCCCcEEEEEEeeccCC-CCHHHHHhHHHHhcc
Confidence 5431 1 111233 778888887654 2356777777777665 555555543322 112222222211111
Q ss_pred CCCCcCCCCHHHHHHHHHhCCCcchhh
Q 020507 244 LLGINATPTLLAKEKLFLDQGWQQAVA 270 (325)
Q Consensus 244 l~g~~~y~t~~~~~~r~~~~Gw~~~~~ 270 (325)
+....+.++..+.+.+.||..+..
T Consensus 205 ---~~~~~~~~e~~~~l~~aGf~~v~i 228 (272)
T PRK11873 205 ---VAGALQEEEYLAMLAEAGFVDITI 228 (272)
T ss_pred ---ccCCCCHHHHHHHHHHCCCCceEE
Confidence 122346678888899999998754
No 41
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=91.33 E-value=3.6 Score=31.97 Aligned_cols=105 Identities=15% Similarity=0.143 Sum_probs=69.1
Q ss_pred ceEEEcCCCCchhhhhhcccCCCCcEEEEecc-hhHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEecccC
Q 020507 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (325)
Q Consensus 87 ~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL~ 165 (325)
..|+-||||.=.....+... .++.+++=||. |++++.=++.+.+. -..++.+++..|+
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~-------------------~~~~~i~~~~~d~- 61 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARL-FPGARVVGVDISPEMLEIARERAAEE-------------------GLSDRITFVQGDA- 61 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHH-HTTSEEEEEESSHHHHHHHHHHHHHT-------------------TTTTTEEEEESCC-
T ss_pred CEEEEEcCcCCHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHhc-------------------CCCCCeEEEECcc-
Confidence 56899999998887777662 13566666666 45555544444321 1168899999999
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEeec-ccc-cCChHHHHHHHHHHHhcCCCceEEEee
Q 020507 166 DIQMLNEVINLANMDPSLPTFIIAEC-VLI-YLDPDSSRAIVGWASKTFSTAVFFLYE 221 (325)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Eg-vl~-YL~~~~~~~ll~~la~~f~~~s~i~~d 221 (325)
.. .+. . ....-++++-+ .+. |++.++..++++.+.+...+|..++.+
T Consensus 62 ~~-~~~-------~-~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 62 EF-DPD-------F-LEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp HG-GTT-------T-SSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cc-Ccc-------c-CCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 21 111 1 12345677766 343 666689999999999988887777654
No 42
>PRK06202 hypothetical protein; Provisional
Probab=90.82 E-value=10 Score=34.03 Aligned_cols=148 Identities=12% Similarity=0.071 Sum_probs=82.7
Q ss_pred cceEEEcCCCCchhhhhhccc---CCCCcEEEEecch-hHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEe
Q 020507 86 KKQILSLGAGFDTTYFQLQAE---GKAPHLYVELDFI-EVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLP 161 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~---~~~~~~~~EvD~p-~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~ 161 (325)
...|+-||||.-.....|... ...+.+++=+|.- ++++.-++.+.. .+..++.
T Consensus 61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~-----------------------~~~~~~~ 117 (232)
T PRK06202 61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR-----------------------PGVTFRQ 117 (232)
T ss_pred CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc-----------------------CCCeEEE
Confidence 468999999997765555321 0135688888884 444432222211 1222333
Q ss_pred cccCCchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCceEEEeecCCCCCHHHHHHHHHHH---
Q 020507 162 VDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLE--- 238 (325)
Q Consensus 162 ~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~s~i~~d~i~p~d~fg~~m~~~l~--- 238 (325)
.|..+.. . ....+| ++++=.++.+++.++..++++.+.+... +.+++-|...+. .+-.......
T Consensus 118 ~~~~~l~-~----~~~~fD-----~V~~~~~lhh~~d~~~~~~l~~~~r~~~-~~~~i~dl~~~~--~~~~~~~~~~~~~ 184 (232)
T PRK06202 118 AVSDELV-A----EGERFD-----VVTSNHFLHHLDDAEVVRLLADSAALAR-RLVLHNDLIRSR--LAYALFWAGTRLL 184 (232)
T ss_pred Eeccccc-c----cCCCcc-----EEEECCeeecCChHHHHHHHHHHHHhcC-eeEEEeccccCH--HHHHHHHHHHHHh
Confidence 3332211 0 111233 6666678899998888889999988654 455555544432 1111111110
Q ss_pred h-----cCCCCCCCcCCCCHHHHHHHHHhCCCcchhh
Q 020507 239 S-----RGCALLGINATPTLLAKEKLFLDQGWQQAVA 270 (325)
Q Consensus 239 ~-----~g~~l~g~~~y~t~~~~~~r~~~~Gw~~~~~ 270 (325)
. ++-...++..+.|.++..+.+++ ||+....
T Consensus 185 ~~~~~~~~d~~~s~~~~~~~~el~~ll~~-Gf~~~~~ 220 (232)
T PRK06202 185 SRSSFVHTDGLLSVRRSYTPAELAALAPQ-GWRVERQ 220 (232)
T ss_pred ccCceeeccchHHHHhhcCHHHHHHHhhC-CCeEEec
Confidence 0 11112356678899999999988 9987654
No 43
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=90.39 E-value=2.2 Score=40.05 Aligned_cols=103 Identities=17% Similarity=0.226 Sum_probs=65.6
Q ss_pred cceEEEcCCCCchhhhhhcccCCCCcEEEEecch-hHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEeccc
Q 020507 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFI-EVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p-~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL 164 (325)
...|+-+|||.=..+..|... +..++=+|.. ..++.=++..... .-+.+.+..|+
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~---------------------~l~v~~~~~D~ 176 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKE---------------------NLNIRTGLYDI 176 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHc---------------------CCceEEEEech
Confidence 358999999986666666554 3456666664 3333222222221 11466667777
Q ss_pred CCchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCceE-EEeecC
Q 020507 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVF-FLYEQI 223 (325)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~s~-i~~d~i 223 (325)
.+. .+ ...|| ++++-+++++++++....+++.+.+...+|.. ++...+
T Consensus 177 ~~~-~~-----~~~fD-----~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~ 225 (287)
T PRK12335 177 NSA-SI-----QEEYD-----FILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAM 225 (287)
T ss_pred hcc-cc-----cCCcc-----EEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 653 22 11344 88899999999999999999999998877665 444433
No 44
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=89.72 E-value=13 Score=32.47 Aligned_cols=153 Identities=13% Similarity=0.171 Sum_probs=81.9
Q ss_pred cceEEEcCCCCchhhhhhcccCCCCcEEEEecc-hhHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEeccc
Q 020507 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL 164 (325)
...|+-+|||.-.....+.........++=+|. |+.+..-++.+.. ..+.+++..|+
T Consensus 40 ~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~----------------------~~~i~~~~~d~ 97 (223)
T TIGR01934 40 GQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL----------------------PLNIEFIQADA 97 (223)
T ss_pred CCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc----------------------CCCceEEecch
Confidence 468999999987766555444211145666665 3333333322221 34566777777
Q ss_pred CCchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCC-ceEEEeecCCCCCH-HHHH---HHHHH-H
Q 020507 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFST-AVFFLYEQIHPDDA-FGQQ---MIRNL-E 238 (325)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~-~s~i~~d~i~p~d~-fg~~---m~~~l-~ 238 (325)
.+.. +....--++++-.++.+++ ....+++.+.....+ |.+++.+...+... +... +.+.+ .
T Consensus 98 ~~~~----------~~~~~~D~i~~~~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (223)
T TIGR01934 98 EALP----------FEDNSFDAVTIAFGLRNVT--DIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLP 165 (223)
T ss_pred hcCC----------CCCCcEEEEEEeeeeCCcc--cHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhh
Confidence 6631 1122334565555555544 466788888887765 55566666555432 1111 11111 1
Q ss_pred hcCCCCC-----------CCcCCCCHHHHHHHHHhCCCcchhhcc
Q 020507 239 SRGCALL-----------GINATPTLLAKEKLFLDQGWQQAVAWD 272 (325)
Q Consensus 239 ~~g~~l~-----------g~~~y~t~~~~~~r~~~~Gw~~~~~~d 272 (325)
..+-.+. ....|.+.++..+.+.++||+......
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 210 (223)
T TIGR01934 166 SIGGLISKNAEAYTYLPESIRAFPSQEELAAMLKEAGFEEVRYRS 210 (223)
T ss_pred hhhhhhcCCchhhHHHHHHHHhCCCHHHHHHHHHHcCCccceeee
Confidence 0010000 113456778888999999999776543
No 45
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=88.74 E-value=11 Score=35.65 Aligned_cols=148 Identities=16% Similarity=0.178 Sum_probs=103.4
Q ss_pred ceEEEcCCCCchhhhhhcccCCCCcEEEEecchhHHHHH-HHHHhhchhhhhhhcccccccccCCCccCCCeEEEecccC
Q 020507 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKK-AALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (325)
Q Consensus 87 ~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K-~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL~ 165 (325)
.-|+-+|||-=...-+.... -+++++=|++.+.+..- ++.+.+. | + ..+.+++-.|.+
T Consensus 74 ~~lLDiGCGWG~l~~~aA~~--y~v~V~GvTlS~~Q~~~~~~r~~~~-------g-----------l-~~~v~v~l~d~r 132 (283)
T COG2230 74 MTLLDIGCGWGGLAIYAAEE--YGVTVVGVTLSEEQLAYAEKRIAAR-------G-----------L-EDNVEVRLQDYR 132 (283)
T ss_pred CEEEEeCCChhHHHHHHHHH--cCCEEEEeeCCHHHHHHHHHHHHHc-------C-----------C-CcccEEEecccc
Confidence 57999999999998888776 38999999997554433 3335542 1 1 368888888988
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCceEEEeecCC-CCC---HHHHHHHHHHHhcC
Q 020507 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIH-PDD---AFGQQMIRNLESRG 241 (325)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~s~i~~d~i~-p~d---~fg~~m~~~l~~~g 241 (325)
+.+.. || =+++=|.+-|+..+.....|+.+.+..+++..++.-.|. +.. .+.....+.+
T Consensus 133 d~~e~--------fD-----rIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yi---- 195 (283)
T COG2230 133 DFEEP--------FD-----RIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYI---- 195 (283)
T ss_pred ccccc--------cc-----eeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhC----
Confidence 85322 65 478889999999999999999999999876555544443 331 3344443332
Q ss_pred CCCCCCcCCCCHHHHHHHHHhCCCcchhhccHHH
Q 020507 242 CALLGINATPTLLAKEKLFLDQGWQQAVAWDMLR 275 (325)
Q Consensus 242 ~~l~g~~~y~t~~~~~~r~~~~Gw~~~~~~d~~~ 275 (325)
++|. ..|++....+...++||.+.....+..
T Consensus 196 --FPgG-~lPs~~~i~~~~~~~~~~v~~~~~~~~ 226 (283)
T COG2230 196 --FPGG-ELPSISEILELASEAGFVVLDVESLRP 226 (283)
T ss_pred --CCCC-cCCCHHHHHHHHHhcCcEEehHhhhcH
Confidence 3332 356777888889999999887544443
No 46
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=88.46 E-value=21 Score=33.47 Aligned_cols=151 Identities=15% Similarity=0.163 Sum_probs=89.8
Q ss_pred ceEEEcCCCCchhhhhhcccCCCCcEEEEecchhHHHH-HHHHHhhchhhhhhhcccccccccCCCccCCCeEEEecccC
Q 020507 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSK-KAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (325)
Q Consensus 87 ~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~-K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL~ 165 (325)
..|+-+|||-=..+.++... -++++.=|.+.+.+.. =++.+.+. | + .++..++-+|.+
T Consensus 64 ~~vLDiGcGwG~~~~~~a~~--~g~~v~gitlS~~Q~~~a~~~~~~~-------g-----------l-~~~v~v~~~D~~ 122 (273)
T PF02353_consen 64 DRVLDIGCGWGGLAIYAAER--YGCHVTGITLSEEQAEYARERIREA-------G-----------L-EDRVEVRLQDYR 122 (273)
T ss_dssp -EEEEES-TTSHHHHHHHHH--H--EEEEEES-HHHHHHHHHHHHCS-------T-----------S-SSTEEEEES-GG
T ss_pred CEEEEeCCCccHHHHHHHHH--cCcEEEEEECCHHHHHHHHHHHHhc-------C-----------C-CCceEEEEeecc
Confidence 57999999999999998877 3677777776543332 22333331 1 1 466777778887
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCceEEEeecCCCCCHHH--------HHHHHHH
Q 020507 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFG--------QQMIRNL 237 (325)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~s~i~~d~i~p~d~fg--------~~m~~~l 237 (325)
+.+ . .|| -+++=+++-.+.++.-..+++.+.+...+|..++...+.-.+... ..|.+.+
T Consensus 123 ~~~---~-----~fD-----~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyi 189 (273)
T PF02353_consen 123 DLP---G-----KFD-----RIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYI 189 (273)
T ss_dssp G-----------S-S-----EEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHT
T ss_pred ccC---C-----CCC-----EEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEee
Confidence 642 2 466 355557778889999999999999999887776666554332211 2233332
Q ss_pred HhcCCCCCCCcCCCCHHHHHHHHHhCCCcchhhccHHHHHc
Q 020507 238 ESRGCALLGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYS 278 (325)
Q Consensus 238 ~~~g~~l~g~~~y~t~~~~~~r~~~~Gw~~~~~~d~~~~y~ 278 (325)
++|- ..|+++.....+.+.||++....++..-|.
T Consensus 190 ------FPgg-~lps~~~~~~~~~~~~l~v~~~~~~~~hY~ 223 (273)
T PF02353_consen 190 ------FPGG-YLPSLSEILRAAEDAGLEVEDVENLGRHYA 223 (273)
T ss_dssp ------STTS----BHHHHHHHHHHTT-EEEEEEE-HHHHH
T ss_pred ------CCCC-CCCCHHHHHHHHhcCCEEEEEEEEcCcCHH
Confidence 2332 246778888888899999887666654443
No 47
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=88.33 E-value=6.6 Score=28.67 Aligned_cols=99 Identities=16% Similarity=0.188 Sum_probs=59.2
Q ss_pred EEEcCCCCchhhhhhcccCCCCcEEEEecc--hhHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEecccCC
Q 020507 89 ILSLGAGFDTTYFQLQAEGKAPHLYVELDF--IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRD 166 (325)
Q Consensus 89 VV~LGAGlDTr~~RL~~~~~~~~~~~EvD~--p~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL~~ 166 (325)
|+.+|||.-.....+... ....++=+|. ..+...++ ..... ...+..++..|+.+
T Consensus 2 ildig~G~G~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~-~~~~~--------------------~~~~~~~~~~~~~~ 58 (107)
T cd02440 2 VLDLGCGTGALALALASG--PGARVTGVDISPVALELARK-AAAAL--------------------LADNVEVLKGDAEE 58 (107)
T ss_pred eEEEcCCccHHHHHHhcC--CCCEEEEEeCCHHHHHHHHH-HHhcc--------------------cccceEEEEcChhh
Confidence 688899887766555543 3444555554 33333332 11110 13456777778776
Q ss_pred chhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCceEEEe
Q 020507 167 IQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLY 220 (325)
Q Consensus 167 ~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~s~i~~ 220 (325)
.. . ......-++++-.++.++ .+....+++.+.+...++..+++
T Consensus 59 ~~-~--------~~~~~~d~i~~~~~~~~~-~~~~~~~l~~~~~~l~~~g~~~~ 102 (107)
T cd02440 59 LP-P--------EADESFDVIISDPPLHHL-VEDLARFLEEARRLLKPGGVLVL 102 (107)
T ss_pred hc-c--------ccCCceEEEEEccceeeh-hhHHHHHHHHHHHHcCCCCEEEE
Confidence 42 1 123455688888877776 77888888888887766655554
No 48
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=87.79 E-value=7.4 Score=28.70 Aligned_cols=93 Identities=13% Similarity=0.099 Sum_probs=55.5
Q ss_pred EcCCCCchhhhhhcccCCCCcEEEEecchhHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEecccCCchhH
Q 020507 91 SLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQML 170 (325)
Q Consensus 91 ~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL~~~~~l 170 (325)
-+|||.=...-.|... +...++=+|.-.-.-.+.+.... ..+..++..|..+. .
T Consensus 2 diG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~----------------------~~~~~~~~~d~~~l-~- 55 (95)
T PF08241_consen 2 DIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLK----------------------NEGVSFRQGDAEDL-P- 55 (95)
T ss_dssp EET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTT----------------------TSTEEEEESBTTSS-S-
T ss_pred EecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhccc----------------------ccCchheeehHHhC-c-
Confidence 4677755554445443 35566666665443333332222 23344778888775 1
Q ss_pred HHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCceEEE
Q 020507 171 NEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFL 219 (325)
Q Consensus 171 ~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~s~i~ 219 (325)
+..+.=-++++-+++.|+ ++..++++.+.+...+|..++
T Consensus 56 --------~~~~sfD~v~~~~~~~~~--~~~~~~l~e~~rvLk~gG~l~ 94 (95)
T PF08241_consen 56 --------FPDNSFDVVFSNSVLHHL--EDPEAALREIYRVLKPGGRLV 94 (95)
T ss_dssp --------S-TT-EEEEEEESHGGGS--SHHHHHHHHHHHHEEEEEEEE
T ss_pred --------cccccccccccccceeec--cCHHHHHHHHHHHcCcCeEEe
Confidence 222333478999999999 888899999999887776654
No 49
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=87.73 E-value=6 Score=39.70 Aligned_cols=105 Identities=27% Similarity=0.364 Sum_probs=67.5
Q ss_pred ceEEEcCCCCchhhhhhcccCCCCcEEEEecchhHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEecccCC
Q 020507 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRD 166 (325)
Q Consensus 87 ~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL~~ 166 (325)
..|+-||||.=....-|... ...++-||.-..+-.+.+..... ..+..++..|+.+
T Consensus 39 ~~vLDlGcG~G~~~~~la~~---~~~v~giD~s~~~l~~a~~~~~~---------------------~~~i~~~~~d~~~ 94 (475)
T PLN02336 39 KSVLELGAGIGRFTGELAKK---AGQVIALDFIESVIKKNESINGH---------------------YKNVKFMCADVTS 94 (475)
T ss_pred CEEEEeCCCcCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHhcc---------------------CCceEEEEecccc
Confidence 47999999987776666554 23556666543332222222110 3467788888865
Q ss_pred chhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCceE-EEeecC
Q 020507 167 IQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVF-FLYEQI 223 (325)
Q Consensus 167 ~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~s~-i~~d~i 223 (325)
. .+ .+..+..-++++..+++|++.+...++++.+.+...+|.. ++.|..
T Consensus 95 ~-~~-------~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~ 144 (475)
T PLN02336 95 P-DL-------NISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESC 144 (475)
T ss_pred c-cc-------CCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEecc
Confidence 2 11 1333445688999999999999999999999997776554 444543
No 50
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=86.33 E-value=21 Score=31.88 Aligned_cols=151 Identities=9% Similarity=-0.005 Sum_probs=78.0
Q ss_pred cceEEEcCCCCchhhhhhcccCCCCcEEEEecchh-HHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEeccc
Q 020507 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIE-VTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~-vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL 164 (325)
...|+.+|||.-.....+... ...+.-+|... .++.-++.+... ..+..++.+|.
T Consensus 49 ~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~---------------------~~~~~~~~~~~ 104 (233)
T PRK05134 49 GKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALES---------------------GLKIDYRQTTA 104 (233)
T ss_pred CCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHc---------------------CCceEEEecCH
Confidence 357999999987776666554 34455566543 333322223221 11344555555
Q ss_pred CCchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCceEEEeecCCCCCH-HH-HHHHHHHHhcCC
Q 020507 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDA-FG-QQMIRNLESRGC 242 (325)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~s~i~~d~i~p~d~-fg-~~m~~~l~~~g~ 242 (325)
.+. ... ....+| ++++-.++.+++ ....+++.+.+...++..+++........ .. ..+.......+.
T Consensus 105 ~~~---~~~-~~~~fD-----~Ii~~~~l~~~~--~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~ 173 (233)
T PRK05134 105 EEL---AAE-HPGQFD-----VVTCMEMLEHVP--DPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRML 173 (233)
T ss_pred HHh---hhh-cCCCcc-----EEEEhhHhhccC--CHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhc
Confidence 432 110 111233 455545555554 34578888888777766566554433211 11 111111111111
Q ss_pred CC--CCCcCCCCHHHHHHHHHhCCCcchhhc
Q 020507 243 AL--LGINATPTLLAKEKLFLDQGWQQAVAW 271 (325)
Q Consensus 243 ~l--~g~~~y~t~~~~~~r~~~~Gw~~~~~~ 271 (325)
+. .....|.+.++..+.+.++||+.+...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~ 204 (233)
T PRK05134 174 PKGTHDYKKFIKPSELAAWLRQAGLEVQDIT 204 (233)
T ss_pred CcccCchhhcCCHHHHHHHHHHCCCeEeeee
Confidence 11 112346788889999999999988753
No 51
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=86.22 E-value=1.9 Score=39.82 Aligned_cols=153 Identities=21% Similarity=0.218 Sum_probs=94.4
Q ss_pred eEEEcCCCCchhhhhhcccC-CCCcEEEEecchhHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEecccCC
Q 020507 88 QILSLGAGFDTTYFQLQAEG-KAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRD 166 (325)
Q Consensus 88 QVV~LGAGlDTr~~RL~~~~-~~~~~~~EvD~p~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL~~ 166 (325)
.|.-+|||-=...|=|.... .++..+|-.|+..- -..+++++. .....+.+.-.+||..
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~---Ai~~vk~~~-----------------~~~e~~~~afv~Dlt~ 133 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPR---AIELVKKSS-----------------GYDESRVEAFVWDLTS 133 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChH---HHHHHHhcc-----------------ccchhhhcccceeccc
Confidence 58889999988888776552 23499999999542 122344432 1123556667789988
Q ss_pred chhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCceEEE-eecCCCCC---HHH--HHHHHHHHhc
Q 020507 167 IQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFL-YEQIHPDD---AFG--QQMIRNLESR 240 (325)
Q Consensus 167 ~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~s~i~-~d~i~p~d---~fg--~~m~~~l~~~ 240 (325)
+ +|.......++| ++++=.||.=++++.....|..+.....+|+.++ -|+-.-+. .|. +.+-.|+--|
T Consensus 134 ~-~~~~~~~~~svD-----~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVR 207 (264)
T KOG2361|consen 134 P-SLKEPPEEGSVD-----IITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVR 207 (264)
T ss_pred h-hccCCCCcCccc-----eEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEc
Confidence 5 555544444444 4445556677889999999999999887765554 45433221 111 1122222112
Q ss_pred CCCCCCCcC-CCCHHHHHHHHHhCCCcchh
Q 020507 241 GCALLGINA-TPTLLAKEKLFLDQGWQQAV 269 (325)
Q Consensus 241 g~~l~g~~~-y~t~~~~~~r~~~~Gw~~~~ 269 (325)
| -|... |.+.+...+.|.+.||..+.
T Consensus 208 g---DGT~~YfF~~eeL~~~f~~agf~~~~ 234 (264)
T KOG2361|consen 208 G---DGTRAYFFTEEELDELFTKAGFEEVQ 234 (264)
T ss_pred c---CCceeeeccHHHHHHHHHhcccchhc
Confidence 2 13433 45678888899999998765
No 52
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=86.09 E-value=4.7 Score=36.83 Aligned_cols=95 Identities=18% Similarity=0.288 Sum_probs=58.1
Q ss_pred cceEEEcCCCCc--hhhhhhcccCCCCcEEEEecc-hhHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEec
Q 020507 86 KKQILSLGAGFD--TTYFQLQAEGKAPHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPV 162 (325)
Q Consensus 86 ~~QVV~LGAGlD--Tr~~RL~~~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~ 162 (325)
..+||-||||-= |...--.+ +...+.-||. |++++.-++.+. +..+..+
T Consensus 31 ~~~v~DLGCGpGnsTelL~~Rw---P~A~i~GiDsS~~Mla~Aa~rlp-------------------------~~~f~~a 82 (257)
T COG4106 31 PRRVVDLGCGPGNSTELLARRW---PDAVITGIDSSPAMLAKAAQRLP-------------------------DATFEEA 82 (257)
T ss_pred cceeeecCCCCCHHHHHHHHhC---CCCeEeeccCCHHHHHHHHHhCC-------------------------CCceecc
Confidence 579999999853 33322233 5778899998 466655544433 3456667
Q ss_pred ccCCchhHHHHHHhCCCCCCCCE-EEEeecccccCChHHHHHHHHHHHhcCCCceEEEeec
Q 020507 163 DLRDIQMLNEVINLANMDPSLPT-FIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQ 222 (325)
Q Consensus 163 DL~~~~~l~~~L~~~g~d~~~PT-l~i~Egvl~YL~~~~~~~ll~~la~~f~~~s~i~~d~ 222 (325)
|+++ +.|..|+ ++.+-.||.+|+.. . +||..+-+...+|+++....
T Consensus 83 Dl~~------------w~p~~~~dllfaNAvlqWlpdH-~-~ll~rL~~~L~Pgg~LAVQm 129 (257)
T COG4106 83 DLRT------------WKPEQPTDLLFANAVLQWLPDH-P-ELLPRLVSQLAPGGVLAVQM 129 (257)
T ss_pred cHhh------------cCCCCccchhhhhhhhhhcccc-H-HHHHHHHHhhCCCceEEEEC
Confidence 7766 3344444 66678899998643 3 44444444456666666543
No 53
>PRK00536 speE spermidine synthase; Provisional
Probab=85.74 E-value=6.8 Score=36.57 Aligned_cols=118 Identities=12% Similarity=0.075 Sum_probs=73.3
Q ss_pred cceEEEcCCCCchhhhh--hcccCCCCcEEEEecchhHHHHHHHHHhhchhhhhhhcccccccccCC--CccCCCeEEEe
Q 020507 86 KKQILSLGAGFDTTYFQ--LQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKG--EVLGDNYKLLP 161 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~R--L~~~~~~~~~~~EvD~p~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~--~~~~~~~~~v~ 161 (325)
++.|+++|+| |--.-| |+.+ ..++.+|||- +|++.=++.++... ..+. ++....-.. ....++|..|-
T Consensus 73 pk~VLIiGGG-DGg~~REvLkh~--~~v~mVeID~-~Vv~~~k~~lP~~~---~~~~-DpRv~l~~~~~~~~~~~fDVII 144 (262)
T PRK00536 73 LKEVLIVDGF-DLELAHQLFKYD--THVDFVQADE-KILDSFISFFPHFH---EVKN-NKNFTHAKQLLDLDIKKYDLII 144 (262)
T ss_pred CCeEEEEcCC-chHHHHHHHCcC--CeeEEEECCH-HHHHHHHHHCHHHH---Hhhc-CCCEEEeehhhhccCCcCCEEE
Confidence 6899999988 555444 4444 4799999997 67777666655422 1111 111111001 11236799999
Q ss_pred cccCCchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCC
Q 020507 162 VDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFST 214 (325)
Q Consensus 162 ~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~ 214 (325)
+|...+....+.+..+ +.++ -+++.++=..|+.++....+.+.+.+.|+.
T Consensus 145 vDs~~~~~fy~~~~~~-L~~~--Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~~ 194 (262)
T PRK00536 145 CLQEPDIHKIDGLKRM-LKED--GVFISVAKHPLLEHVSMQNALKNMGDFFSI 194 (262)
T ss_pred EcCCCChHHHHHHHHh-cCCC--cEEEECCCCcccCHHHHHHHHHHHHhhCCc
Confidence 9955443443333322 2211 277777778888999999999999999974
No 54
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=85.23 E-value=26 Score=30.91 Aligned_cols=152 Identities=9% Similarity=-0.029 Sum_probs=79.6
Q ss_pred cceEEEcCCCCchhhhhhcccCCCCcEEEEecch-hHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEeccc
Q 020507 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFI-EVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p-~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL 164 (325)
...|+.+|||.-+....+... ...+.-+|.. .+++.-++.+.... ..+.+++..|+
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~--------------------~~~~~~~~~d~ 102 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDP--------------------LLKIEYRCTSV 102 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcC--------------------CCceEEEeCCH
Confidence 467999999987776666544 2335556653 34444443343310 11345555554
Q ss_pred CCchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCceEEEeecCCCCC-HH-HHHHHHHHHhcCC
Q 020507 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDD-AF-GQQMIRNLESRGC 242 (325)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~s~i~~d~i~p~d-~f-g~~m~~~l~~~g~ 242 (325)
.+. .. . .++.--++++-.++.+.. ....+++.+.+...++..+++...+... .+ ...+...+.....
T Consensus 103 ~~~---~~---~---~~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 171 (224)
T TIGR01983 103 EDL---AE---K---GAKSFDVVTCMEVLEHVP--DPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIV 171 (224)
T ss_pred HHh---hc---C---CCCCccEEEehhHHHhCC--CHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcC
Confidence 331 11 0 012233666666777765 3457888888877666555544333221 11 1111111111111
Q ss_pred CCC--CCcCCCCHHHHHHHHHhCCCcchhhc
Q 020507 243 ALL--GINATPTLLAKEKLFLDQGWQQAVAW 271 (325)
Q Consensus 243 ~l~--g~~~y~t~~~~~~r~~~~Gw~~~~~~ 271 (325)
+-. ....|.+.++..+.+.+.||+.++..
T Consensus 172 ~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~~ 202 (224)
T TIGR01983 172 PKGTHDWEKFIKPSELTSWLESAGLRVKDVK 202 (224)
T ss_pred CCCcCChhhcCCHHHHHHHHHHcCCeeeeee
Confidence 111 11245677888889999999987754
No 55
>PLN02366 spermidine synthase
Probab=82.98 E-value=10 Score=36.20 Aligned_cols=45 Identities=16% Similarity=0.172 Sum_probs=29.9
Q ss_pred cceEEEcCCCCchhhhhhcc-cCCCCcEEEEecchhHHHHHHHHHhh
Q 020507 86 KKQILSLGAGFDTTYFQLQA-EGKAPHLYVELDFIEVTSKKAALIET 131 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~-~~~~~~~~~EvD~p~vi~~K~~~l~~ 131 (325)
.+.|+.+|+|-=..+..+.. +....+..+|+| |+|++.=++.+..
T Consensus 92 pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD-~~Vi~~ar~~f~~ 137 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREIARHSSVEQIDICEID-KMVIDVSKKFFPD 137 (308)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCCCeEEEEECC-HHHHHHHHHhhhh
Confidence 56799999997665544432 212467889999 6777776666553
No 56
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=82.41 E-value=34 Score=30.14 Aligned_cols=155 Identities=14% Similarity=0.118 Sum_probs=80.3
Q ss_pred ceEEEcCCCCchhhhhhcccCCCCcEEEEecchhHH-HHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEecccC
Q 020507 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVT-SKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (325)
Q Consensus 87 ~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi-~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL~ 165 (325)
..|+.+|||-=.....+......+.+++=+|....+ +.=++.+... + ...+..++.+|+.
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-------~------------~~~~~~~~~~d~~ 113 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDL-------G------------LSGNVEFVQGDAE 113 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccc-------c------------cccCeEEEecccc
Confidence 579999999865555554331124677777774333 3222222221 0 0245677778876
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCc-eEEEeecCCCCCHHHHHHHHHH-----Hh
Q 020507 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTA-VFFLYEQIHPDDAFGQQMIRNL-----ES 239 (325)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~-s~i~~d~i~p~d~fg~~m~~~l-----~~ 239 (325)
+.. +.....-++++-.++.+++ ....+++.+.+...+| .+++.|...+....-+...+.+ ..
T Consensus 114 ~~~----------~~~~~~D~I~~~~~l~~~~--~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (239)
T PRK00216 114 ALP----------FPDNSFDAVTIAFGLRNVP--DIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPL 181 (239)
T ss_pred cCC----------CCCCCccEEEEecccccCC--CHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHH
Confidence 631 1111122444444455544 4567888888877654 5556665555432111111100 00
Q ss_pred cCCCCC-----------CCcCCCCHHHHHHHHHhCCCcchhhcc
Q 020507 240 RGCALL-----------GINATPTLLAKEKLFLDQGWQQAVAWD 272 (325)
Q Consensus 240 ~g~~l~-----------g~~~y~t~~~~~~r~~~~Gw~~~~~~d 272 (325)
.+..+. .+..+.+.+...+.+.++||+......
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 225 (239)
T PRK00216 182 IGKLISKNAEAYSYLAESIRAFPDQEELAAMLEEAGFERVRYRN 225 (239)
T ss_pred HHHHHcCCcHHHHHHHHHHHhCCCHHHHHHHHHhCCCceeeeee
Confidence 000000 123456778888889999999776543
No 57
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=82.32 E-value=11 Score=36.46 Aligned_cols=139 Identities=16% Similarity=0.195 Sum_probs=96.7
Q ss_pred cceEEEcCCCCchhhhhhcccCCCCcEEEEecchhHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEecccC
Q 020507 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL~ 165 (325)
..-.|-+|+|.=...=++... ++.+.-++.|+|.+++.+..+- .....|.+|..
T Consensus 178 v~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~-------------------------~gV~~v~gdmf 231 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA-------------------------PGVEHVAGDMF 231 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc-------------------------CCcceeccccc
Confidence 678999999997776666654 6899999999999998776542 11556777776
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCC-ceEEEeecCCCC-CHH---------HHHHH
Q 020507 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFST-AVFFLYEQIHPD-DAF---------GQQMI 234 (325)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~-~s~i~~d~i~p~-d~f---------g~~m~ 234 (325)
.. . |..- ++...-||--++.++..++|+.|.+.+++ |..++-|.+.|. +.+ ...|.
T Consensus 232 q~--~----------P~~d-aI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~l 298 (342)
T KOG3178|consen 232 QD--T----------PKGD-AIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLL 298 (342)
T ss_pred cc--C----------CCcC-eEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHH
Confidence 51 1 1111 88889999999999999999999998875 678889998884 322 22222
Q ss_pred HHH-HhcCCCCCCCcCCCCHHHHHHHHHhCCCcchhh
Q 020507 235 RNL-ESRGCALLGINATPTLLAKEKLFLDQGWQQAVA 270 (325)
Q Consensus 235 ~~l-~~~g~~l~g~~~y~t~~~~~~r~~~~Gw~~~~~ 270 (325)
... .+-|-. .+..+-...+.+.||.+...
T Consensus 299 m~~~~~~Gke-------rt~~e~q~l~~~~gF~~~~~ 328 (342)
T KOG3178|consen 299 MLTQTSGGKE-------RTLKEFQALLPEEGFPVCMV 328 (342)
T ss_pred HHHHhcccee-------ccHHHHHhcchhhcCceeEE
Confidence 222 222322 23445555667889987664
No 58
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=80.54 E-value=20 Score=31.62 Aligned_cols=126 Identities=13% Similarity=0.155 Sum_probs=64.8
Q ss_pred cceEEEcCCCCchhhhhhcccCCCCcEEEEecchh-HHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEeccc
Q 020507 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIE-VTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~-vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL 164 (325)
...|+-+|||.=.....|... .++..++-||.-. .++.=++.+... . ..+..++..|.
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~-~p~~~v~gVD~s~~~i~~a~~~~~~~------------------~--~~~v~~~~~d~ 99 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKA-NPDINFIGIEVHEPGVGKALKKIEEE------------------G--LTNLRLLCGDA 99 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHH-CCCccEEEEEechHHHHHHHHHHHHc------------------C--CCCEEEEecCH
Confidence 368999999998887766543 2445666666633 232222223221 0 24577788777
Q ss_pred CCchhHHHHHHhCCCCCCCCEEEEeecccccCCh------HHHHHHHHHHHhcCCCceEEEeecCCCCCHHHHHHHHHHH
Q 020507 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDP------DSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLE 238 (325)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~------~~~~~ll~~la~~f~~~s~i~~d~i~p~d~fg~~m~~~l~ 238 (325)
.+ .+...+....+| .+++. ....+... .....+++.+.+...++..+++-. +...+-..|.+.++
T Consensus 100 ~~--~l~~~~~~~~~D----~V~~~-~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~--~~~~~~~~~~~~~~ 170 (202)
T PRK00121 100 VE--VLLDMFPDGSLD----RIYLN-FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT--DWEGYAEYMLEVLS 170 (202)
T ss_pred HH--HHHHHcCccccc----eEEEE-CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc--CCHHHHHHHHHHHH
Confidence 22 232222222232 33332 22222221 124678888888787766555432 22234455666666
Q ss_pred hcC
Q 020507 239 SRG 241 (325)
Q Consensus 239 ~~g 241 (325)
+.|
T Consensus 171 ~~g 173 (202)
T PRK00121 171 AEG 173 (202)
T ss_pred hCc
Confidence 555
No 59
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=80.37 E-value=29 Score=28.76 Aligned_cols=107 Identities=20% Similarity=0.248 Sum_probs=68.2
Q ss_pred cceEEEcCCCCchhhhhhcccCCCCcEEEEecchhHHHHHHHH-HhhchhhhhhhcccccccccCCCccCCCeEEEeccc
Q 020507 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAAL-IETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~-l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL 164 (325)
...|+-||||.=...+.|.....++.+++=||.-+.+-.+.+. +++. ...+++++..|+
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~--------------------~~~ni~~~~~d~ 63 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKEL--------------------GLDNIEFIQGDI 63 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHT--------------------TSTTEEEEESBT
T ss_pred CCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccc--------------------cccccceEEeeh
Confidence 5789999999888877777321256778888885444444433 3332 134899999999
Q ss_pred CCchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCC-ceEEEeecC
Q 020507 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFST-AVFFLYEQI 223 (325)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~-~s~i~~d~i 223 (325)
.+.+.. +. ..|| ++++-+++.+++.. ..+++.+.+...+ |.+++.+..
T Consensus 64 ~~l~~~---~~-~~~D-----~I~~~~~l~~~~~~--~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 64 EDLPQE---LE-EKFD-----IIISNGVLHHFPDP--EKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TCGCGC---SS-TTEE-----EEEEESTGGGTSHH--HHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hccccc---cC-CCee-----EEEEcCchhhccCH--HHHHHHHHHHcCCCcEEEEEECC
Confidence 885211 11 1344 78888998887755 4777777776665 455555544
No 60
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=79.45 E-value=21 Score=33.05 Aligned_cols=56 Identities=18% Similarity=0.377 Sum_probs=42.2
Q ss_pred CCeEEEecccCCchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCceEEEe
Q 020507 155 DNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLY 220 (325)
Q Consensus 155 ~~~~~v~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~s~i~~ 220 (325)
.+.++...|+.+.. .. ...|| ++++-.||+|++++...++++.+.+...+|.+++.
T Consensus 185 ~~V~F~~~dl~~~~-~~----~~~fD-----~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~l 240 (264)
T smart00138 185 ERVRFAKHNLLAES-PP----LGDFD-----LIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFL 240 (264)
T ss_pred CcCEEeeccCCCCC-Cc----cCCCC-----EEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 46777778887741 11 11243 77888999999999999999999998888777665
No 61
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=78.96 E-value=13 Score=31.50 Aligned_cols=104 Identities=13% Similarity=0.041 Sum_probs=61.9
Q ss_pred CCeEEEecccCCchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCC-ceEEEeecCCCCCHHHHHH
Q 020507 155 DNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFST-AVFFLYEQIHPDDAFGQQM 233 (325)
Q Consensus 155 ~~~~~v~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~-~s~i~~d~i~p~d~fg~~m 233 (325)
.+..++..|..+.. +..+.--++++-.++.+++ +..+.++.+.+...+ |.+++.|...+...+.+.+
T Consensus 26 ~~i~~~~~d~~~lp----------~~~~~fD~v~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~ 93 (160)
T PLN02232 26 KCIEWIEGDAIDLP----------FDDCEFDAVTMGYGLRNVV--DRLRAMKEMYRVLKPGSRVSILDFNKSNQSVTTFM 93 (160)
T ss_pred CceEEEEechhhCC----------CCCCCeeEEEecchhhcCC--CHHHHHHHHHHHcCcCeEEEEEECCCCChHHHHHH
Confidence 46778888876641 2222223555566677774 456788888887766 5566777766654433322
Q ss_pred HHHHH-hcCCC-------------C-CCCcCCCCHHHHHHHHHhCCCcchhh
Q 020507 234 IRNLE-SRGCA-------------L-LGINATPTLLAKEKLFLDQGWQQAVA 270 (325)
Q Consensus 234 ~~~l~-~~g~~-------------l-~g~~~y~t~~~~~~r~~~~Gw~~~~~ 270 (325)
..... ..+.| + .++..+++.++..+.++++||+.+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~ 145 (160)
T PLN02232 94 QGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACH 145 (160)
T ss_pred HHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceE
Confidence 11110 01111 1 13456788999999999999987753
No 62
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=78.81 E-value=9.8 Score=35.83 Aligned_cols=107 Identities=14% Similarity=0.217 Sum_probs=54.2
Q ss_pred cceEEEcCCCCchh-hhhhcccCCCCcEEEEecc-hhHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEecc
Q 020507 86 KKQILSLGAGFDTT-YFQLQAEGKAPHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVD 163 (325)
Q Consensus 86 ~~QVV~LGAGlDTr-~~RL~~~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~D 163 (325)
...|+.+|+|==|. ...|......++.+..+|. |+-++.-++++.....| +.+..++..|
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L------------------~~~m~f~~~d 182 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL------------------SKRMSFITAD 182 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-------------------SSEEEEES-
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc------------------cCCeEEEecc
Confidence 46999999994444 7777643223555544444 23345555666632211 5778889888
Q ss_pred cCCchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCceEEEee
Q 020507 164 LRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYE 221 (325)
Q Consensus 164 L~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~s~i~~d 221 (325)
..+.. ..|. .+| ++||+ -|..++.+.-.++|..+.+..++|+.+++=
T Consensus 183 ~~~~~---~dl~--~~D----vV~lA--alVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 183 VLDVT---YDLK--EYD----VVFLA--ALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp GGGG----GG------S----EEEE---TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hhccc---cccc--cCC----EEEEh--hhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 87641 1122 244 56665 456888999999999999999999988874
No 63
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=78.74 E-value=44 Score=32.13 Aligned_cols=118 Identities=15% Similarity=0.029 Sum_probs=69.8
Q ss_pred cceEEEcCCCCchhhhhhccc---CCCCcEEEEecchh-HHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEe
Q 020507 86 KKQILSLGAGFDTTYFQLQAE---GKAPHLYVELDFIE-VTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLP 161 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~---~~~~~~~~EvD~p~-vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~ 161 (325)
...+|-||||--+---.|... ....++|+=||.-. .++.=.+.|... ..+.=..+-|.
T Consensus 77 ~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~------------------~~p~l~v~~l~ 138 (319)
T TIGR03439 77 GSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLG------------------NFSHVRCAGLL 138 (319)
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhc------------------cCCCeEEEEEE
Confidence 458999999964432221111 01367899998863 443333333310 11122344477
Q ss_pred cccCCchhHHHHHHhCCCCCCCCEEEEeec-ccccCChHHHHHHHHHHHh-cCCC-ceE-EEeecCCC
Q 020507 162 VDLRDIQMLNEVINLANMDPSLPTFIIAEC-VLIYLDPDSSRAIVGWASK-TFST-AVF-FLYEQIHP 225 (325)
Q Consensus 162 ~DL~~~~~l~~~L~~~g~d~~~PTl~i~Eg-vl~YL~~~~~~~ll~~la~-~f~~-~s~-i~~d~i~p 225 (325)
+|+.+.-.| |.. .-.++.|.++++=| .+--++++++..+|+.+++ ...+ +.+ |.+|....
T Consensus 139 gdy~~~l~~---l~~-~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~ 202 (319)
T TIGR03439 139 GTYDDGLAW---LKR-PENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCKD 202 (319)
T ss_pred ecHHHHHhh---ccc-ccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCCCC
Confidence 788774222 221 11235678888888 7889999999999999998 6654 443 34676653
No 64
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=77.42 E-value=6.8 Score=38.44 Aligned_cols=119 Identities=14% Similarity=0.196 Sum_probs=66.4
Q ss_pred CcceEEEcCCCCchhhhh--hcccCCCCcEEEEecchhHHHHHH--HHHhhchhhhhhhcccccccccCC-----CccCC
Q 020507 85 TKKQILSLGAGFDTTYFQ--LQAEGKAPHLYVELDFIEVTSKKA--ALIETHGELKDKVGVTASISQAKG-----EVLGD 155 (325)
Q Consensus 85 ~~~QVV~LGAGlDTr~~R--L~~~~~~~~~~~EvD~p~vi~~K~--~~l~~~~~l~~~lg~~~~~~~~~~-----~~~~~ 155 (325)
+-.-|++||+| |-.+.| ++.++...++-+|+| |.+|+.-+ ..+++..+- .+..+...-.+.. .-..+
T Consensus 289 ~a~~vLvlGGG-DGLAlRellkyP~~~qI~lVdLD-P~miela~~~~vlr~~N~~--sf~dpRv~Vv~dDAf~wlr~a~~ 364 (508)
T COG4262 289 GARSVLVLGGG-DGLALRELLKYPQVEQITLVDLD-PRMIELASHATVLRALNQG--SFSDPRVTVVNDDAFQWLRTAAD 364 (508)
T ss_pred ccceEEEEcCC-chHHHHHHHhCCCcceEEEEecC-HHHHHHhhhhhHhhhhccC--CccCCeeEEEeccHHHHHHhhcc
Confidence 45789999988 888888 333322355666666 67777655 445442110 0111111101111 11245
Q ss_pred CeEEEecccCCchh----------HHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHh
Q 020507 156 NYKLLPVDLRDIQM----------LNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASK 210 (325)
Q Consensus 156 ~~~~v~~DL~~~~~----------l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~ 210 (325)
.|..|-+||.|++. +-..|.. .+. .--++|.+.-..|.+|+..-.+++.+.+
T Consensus 365 ~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~-~l~--e~Gl~VvQags~y~tp~vfw~i~aTik~ 426 (508)
T COG4262 365 MFDVVIVDLPDPSTPSIGRLYSVEFYRLLSR-HLA--ETGLMVVQAGSPYFTPRVFWRIDATIKS 426 (508)
T ss_pred cccEEEEeCCCCCCcchhhhhhHHHHHHHHH-hcC--cCceEEEecCCCccCCceeeeehhHHHh
Confidence 78888888888631 1111221 121 2236777777888888888877777766
No 65
>PRK00811 spermidine synthase; Provisional
Probab=76.89 E-value=21 Score=33.43 Aligned_cols=121 Identities=14% Similarity=0.134 Sum_probs=62.0
Q ss_pred cceEEEcCCCCchhhhhhcc-cCCCCcEEEEecchhHHHHHHHHHhhc-------hhhhhhhcccccccccCCCccCCCe
Q 020507 86 KKQILSLGAGFDTTYFQLQA-EGKAPHLYVELDFIEVTSKKAALIETH-------GELKDKVGVTASISQAKGEVLGDNY 157 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~-~~~~~~~~~EvD~p~vi~~K~~~l~~~-------~~l~~~lg~~~~~~~~~~~~~~~~~ 157 (325)
.+.|+.||||-=.....+.. +....+..+|+|-. +++.=++.+... |++.-+.+.-.... .....+|
T Consensus 77 p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~-vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l----~~~~~~y 151 (283)
T PRK00811 77 PKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDER-VVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFV----AETENSF 151 (283)
T ss_pred CCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHH-HHHHHHHHhHHhccccccCCceEEEECchHHHH----hhCCCcc
Confidence 46799999987666444432 22246889999974 444444444421 11110011000000 0124578
Q ss_pred EEEecccCCch---------hHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCC
Q 020507 158 KLLPVDLRDIQ---------MLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFST 214 (325)
Q Consensus 158 ~~v~~DL~~~~---------~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~ 214 (325)
.+|-+|+.++. ++.+.+.. -+.++. +++..+-..++.++....+++.+.+.|+.
T Consensus 152 DvIi~D~~dp~~~~~~l~t~ef~~~~~~-~L~~gG--vlv~~~~~~~~~~~~~~~i~~tl~~~F~~ 214 (283)
T PRK00811 152 DVIIVDSTDPVGPAEGLFTKEFYENCKR-ALKEDG--IFVAQSGSPFYQADEIKDMHRKLKEVFPI 214 (283)
T ss_pred cEEEECCCCCCCchhhhhHHHHHHHHHH-hcCCCc--EEEEeCCCcccCHHHHHHHHHHHHHHCCC
Confidence 88888876541 11111121 233222 23344444566677788888888888876
No 66
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=76.70 E-value=51 Score=28.77 Aligned_cols=126 Identities=7% Similarity=0.116 Sum_probs=68.3
Q ss_pred cceEEEcCCCCchhhhhhcccCCCCcEEEEecchh-HHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEeccc
Q 020507 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIE-VTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~-vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL 164 (325)
...|+-+|||.=.....+... .++..++-||.-. .++.=++.+.+. . -.|++++.+|+
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~-~p~~~v~gvD~~~~~l~~a~~~~~~~------------------~--l~ni~~i~~d~ 75 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQ-NPDKNFLGIEIHTPIVLAANNKANKL------------------G--LKNLHVLCGDA 75 (194)
T ss_pred CceEEEeCCCccHHHHHHHHh-CCCCCEEEEEeeHHHHHHHHHHHHHh------------------C--CCCEEEEccCH
Confidence 457999999998887777655 2556677777733 333322333331 1 24788898888
Q ss_pred CCchhHHHHHHhCCCCCCCCEEEEeecccccCChHH------HHHHHHHHHhcCCCceEEEeecCCCCCHHHHHHHHHHH
Q 020507 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDS------SRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLE 238 (325)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~------~~~ll~~la~~f~~~s~i~~d~i~p~d~fg~~m~~~l~ 238 (325)
.+. +... ++...-..+++-....+..... ...+++.+++...+|..+.+.. ....+...|...+.
T Consensus 76 ~~~--~~~~-----~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t--d~~~~~~~~~~~~~ 146 (194)
T TIGR00091 76 NEL--LDKF-----FPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT--DNEPLFEDMLKVLS 146 (194)
T ss_pred HHH--HHhh-----CCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe--CCHHHHHHHHHHHH
Confidence 652 2221 1111111222222222222111 2568888888887766655432 22235566777776
Q ss_pred hcC
Q 020507 239 SRG 241 (325)
Q Consensus 239 ~~g 241 (325)
+.+
T Consensus 147 ~~~ 149 (194)
T TIGR00091 147 END 149 (194)
T ss_pred hCC
Confidence 655
No 67
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=75.47 E-value=63 Score=29.25 Aligned_cols=143 Identities=12% Similarity=0.105 Sum_probs=79.5
Q ss_pred cceEEEcCCCCchhhhhhcccCCCCcEEEEecchhHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEecccC
Q 020507 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL~ 165 (325)
..+|+-+|||.-.....+... .++..++=||..+.+-.+.+ +. ..+..++..|+.
T Consensus 32 ~~~vLDiGcG~G~~~~~la~~-~~~~~v~gvD~s~~~i~~a~---~~---------------------~~~~~~~~~d~~ 86 (258)
T PRK01683 32 PRYVVDLGCGPGNSTELLVER-WPAARITGIDSSPAMLAEAR---SR---------------------LPDCQFVEADIA 86 (258)
T ss_pred CCEEEEEcccCCHHHHHHHHH-CCCCEEEEEECCHHHHHHHH---Hh---------------------CCCCeEEECchh
Confidence 468999999998877666654 24567888888543332222 10 123456666765
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCceEEEeecCCCCCHHHHHHHHHHHhcCCCCC
Q 020507 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRGCALL 245 (325)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~s~i~~d~i~p~d~fg~~m~~~l~~~g~~l~ 245 (325)
+. . ....+| ++++-.++.+++. ...+++.+.+...+|..++..........+......+.. ..+|.
T Consensus 87 ~~---~---~~~~fD-----~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~-~~~w~ 152 (258)
T PRK01683 87 SW---Q---PPQALD-----LIFANASLQWLPD--HLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAE-NGPWE 152 (258)
T ss_pred cc---C---CCCCcc-----EEEEccChhhCCC--HHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHc-cCchH
Confidence 42 1 011233 5666667788864 457888888888776666665322212122211111111 01110
Q ss_pred ------C--CcCCCCHHHHHHHHHhCCCcc
Q 020507 246 ------G--INATPTLLAKEKLFLDQGWQQ 267 (325)
Q Consensus 246 ------g--~~~y~t~~~~~~r~~~~Gw~~ 267 (325)
+ ...+++.+...+.+.+.|+.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v 182 (258)
T PRK01683 153 QNLPDRGARRAPLPPPHAYYDALAPAACRV 182 (258)
T ss_pred HHhccccccCcCCCCHHHHHHHHHhCCCce
Confidence 0 123467778888888889764
No 68
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=74.91 E-value=40 Score=30.71 Aligned_cols=118 Identities=11% Similarity=0.129 Sum_probs=73.0
Q ss_pred CcceEEEcCCCCchhhhhhcccCCCCcEEEEecchhHHHH-HHHHHhhchhhhhhhcccccccccCCCccCCCeE-EEec
Q 020507 85 TKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSK-KAALIETHGELKDKVGVTASISQAKGEVLGDNYK-LLPV 162 (325)
Q Consensus 85 ~~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~-K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~-~v~~ 162 (325)
++.-|+-+|||--+-+=-+++. +++.+--||--+-++. -.+-..+. ...++. +|-+
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~~~--p~~svt~lDpn~~mee~~~ks~~E~--------------------k~~~~~~fvva 133 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYPWK--PINSVTCLDPNEKMEEIADKSAAEK--------------------KPLQVERFVVA 133 (252)
T ss_pred CccceEEecccCCCCcccccCC--CCceEEEeCCcHHHHHHHHHHHhhc--------------------cCcceEEEEee
Confidence 3677899999998876666665 6888888998655432 12222221 134555 7888
Q ss_pred ccCCchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCC-ceEEEeecCCCCCHHHHHHHH
Q 020507 163 DLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFST-AVFFLYEQIHPDDAFGQQMIR 235 (325)
Q Consensus 163 DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~-~s~i~~d~i~p~d~fg~~m~~ 235 (325)
|..+..++ .+..+|.=.-||+| -+.+...+.|+.+.+...+ |.++..|.+.....|-..|.+
T Consensus 134 ~ge~l~~l----~d~s~DtVV~TlvL-------CSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q 196 (252)
T KOG4300|consen 134 DGENLPQL----ADGSYDTVVCTLVL-------CSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQ 196 (252)
T ss_pred chhcCccc----ccCCeeeEEEEEEE-------eccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHH
Confidence 88775433 33334422233322 3577788888888888865 567778888765444433433
No 69
>PRK08317 hypothetical protein; Provisional
Probab=72.89 E-value=64 Score=28.16 Aligned_cols=145 Identities=14% Similarity=0.089 Sum_probs=78.1
Q ss_pred cceEEEcCCCCchhhhhhcccCCCCcEEEEecchhHH--HHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEecc
Q 020507 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVT--SKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVD 163 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi--~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~D 163 (325)
...|+-+|||.-.....+.....+...++=+|....+ ..+++ ... ...+..++..|
T Consensus 20 ~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~-~~~---------------------~~~~~~~~~~d 77 (241)
T PRK08317 20 GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER-AAG---------------------LGPNVEFVRGD 77 (241)
T ss_pred CCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH-hhC---------------------CCCceEEEecc
Confidence 3579999999877665554331134566666664322 22221 111 13567778888
Q ss_pred cCCchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCceEEEeecCC-------CCC-HHHHHHHH
Q 020507 164 LRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIH-------PDD-AFGQQMIR 235 (325)
Q Consensus 164 L~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~s~i~~d~i~-------p~d-~fg~~m~~ 235 (325)
+.+. . +....--++++-.++.+++. ...+++.+.+...+|..+++.... +.+ ..-..+..
T Consensus 78 ~~~~-~---------~~~~~~D~v~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (241)
T PRK08317 78 ADGL-P---------FPDGSFDAVRSDRVLQHLED--PARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILN 145 (241)
T ss_pred cccC-C---------CCCCCceEEEEechhhccCC--HHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHH
Confidence 7653 1 11223346777778888764 567788888877766554433221 111 11122222
Q ss_pred HHHhcCCCCCCCcCCCCHHHHHHHHHhCCCcchhh
Q 020507 236 NLESRGCALLGINATPTLLAKEKLFLDQGWQQAVA 270 (325)
Q Consensus 236 ~l~~~g~~l~g~~~y~t~~~~~~r~~~~Gw~~~~~ 270 (325)
.+...+ ....+.....+.+.++||..+..
T Consensus 146 ~~~~~~------~~~~~~~~~~~~l~~aGf~~~~~ 174 (241)
T PRK08317 146 FWSDHF------ADPWLGRRLPGLFREAGLTDIEV 174 (241)
T ss_pred HHHhcC------CCCcHHHHHHHHHHHcCCCceeE
Confidence 222211 11223456777889999987653
No 70
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=72.75 E-value=73 Score=28.74 Aligned_cols=138 Identities=10% Similarity=0.043 Sum_probs=73.8
Q ss_pred cceEEEcCCCCchhhhhhcccCCCCcEEEEecc-hhHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEeccc
Q 020507 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL 164 (325)
...|+-+|||.=.....|... +..++-+|. |++++.-++... ...++..|+
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~-------------------------~~~~~~~d~ 94 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA-------------------------ADHYLAGDI 94 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC-------------------------CCCEEEcCc
Confidence 467999999986555455443 467788887 444432221111 123456676
Q ss_pred CCchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCceEEEeecCCCCCHHHHHHHHHHHhcCCCC
Q 020507 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRGCAL 244 (325)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~s~i~~d~i~p~d~fg~~m~~~l~~~g~~l 244 (325)
.+. .+ ....|| ++++-.++.+++ +...+|+.+.+...+|..+++-.+.+.. +. .+.+.+...+.+
T Consensus 95 ~~~-~~----~~~~fD-----~V~s~~~l~~~~--d~~~~l~~~~~~Lk~gG~l~~~~~~~~~-~~-el~~~~~~~~~~- 159 (251)
T PRK10258 95 ESL-PL----ATATFD-----LAWSNLAVQWCG--NLSTALRELYRVVRPGGVVAFTTLVQGS-LP-ELHQAWQAVDER- 159 (251)
T ss_pred ccC-cC----CCCcEE-----EEEECchhhhcC--CHHHHHHHHHHHcCCCeEEEEEeCCCCc-hH-HHHHHHHHhccC-
Confidence 553 11 111232 555555566654 3567888888878776666665444432 11 122223222222
Q ss_pred CCCcCCCCHHHHHHHHHhCCCc
Q 020507 245 LGINATPTLLAKEKLFLDQGWQ 266 (325)
Q Consensus 245 ~g~~~y~t~~~~~~r~~~~Gw~ 266 (325)
.....|.+.++..+.+...|+.
T Consensus 160 ~~~~~~~~~~~l~~~l~~~~~~ 181 (251)
T PRK10258 160 PHANRFLPPDAIEQALNGWRYQ 181 (251)
T ss_pred CccccCCCHHHHHHHHHhCCce
Confidence 1234566777777777766654
No 71
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=71.20 E-value=31 Score=32.56 Aligned_cols=121 Identities=17% Similarity=0.143 Sum_probs=67.4
Q ss_pred cceEEEcCCCCchhhhhhccc-CCCCcEEEEecchhHHHHHHHHHhhchhhhhhhccccc--ccccCC----CccCCCeE
Q 020507 86 KKQILSLGAGFDTTYFQLQAE-GKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTAS--ISQAKG----EVLGDNYK 158 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~-~~~~~~~~EvD~p~vi~~K~~~l~~~~~l~~~lg~~~~--~~~~~~----~~~~~~~~ 158 (325)
.+-|+++|.|-=.....+... ....++.+|||- +|++.=++.+....... . ++. ..+.+| .-.+..|-
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~-~Vi~~ar~~l~~~~~~~---~-dpRv~i~i~Dg~~~v~~~~~~fD 151 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDP-AVIELARKYLPEPSGGA---D-DPRVEIIIDDGVEFLRDCEEKFD 151 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCH-HHHHHHHHhccCccccc---C-CCceEEEeccHHHHHHhCCCcCC
Confidence 357888888866664444322 136889999994 88888888877642110 0 111 112222 11233688
Q ss_pred EEecccCCch---------hHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCC
Q 020507 159 LLPVDLRDIQ---------MLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFST 214 (325)
Q Consensus 159 ~v~~DL~~~~---------~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~ 214 (325)
+|-+|..|+. ..-+.+.+ .+ +.+=++++.+-..++..+......+.+...|+.
T Consensus 152 vIi~D~tdp~gp~~~Lft~eFy~~~~~-~L--~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~vf~~ 213 (282)
T COG0421 152 VIIVDSTDPVGPAEALFTEEFYEGCRR-AL--KEDGIFVAQAGSPFLQDEEIALAYRNVSRVFSI 213 (282)
T ss_pred EEEEcCCCCCCcccccCCHHHHHHHHH-hc--CCCcEEEEecCCcccchHHHHHHHHHHHhhccc
Confidence 8888888861 11121211 11 122356666555777777777777777776654
No 72
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=69.36 E-value=30 Score=27.40 Aligned_cols=71 Identities=13% Similarity=0.288 Sum_probs=46.1
Q ss_pred ccccCChHHHHHHHHHHHhcCCCceEEEeecCCCCCHHHHHHHHHHHhcCCCCCCCcCCCC-----HHHHHHHHHhCCCc
Q 020507 192 VLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRGCALLGINATPT-----LLAKEKLFLDQGWQ 266 (325)
Q Consensus 192 vl~YL~~~~~~~ll~~la~~f~~~s~i~~d~i~p~d~fg~~m~~~l~~~g~~l~g~~~y~t-----~~~~~~r~~~~Gw~ 266 (325)
||+|=+++++.++|+.|+++......+.|- |..+ +...+...|.=+++-+.-+. .++..+.+.++||+
T Consensus 4 vLIHYp~~d~~~~l~~La~~t~~~~ifTfA---P~T~----~L~~m~~iG~lFP~~dRsp~i~~~~e~~l~~~l~~~g~~ 76 (97)
T PF07109_consen 4 VLIHYPAEDAAQMLAHLASRTRGSLIFTFA---PRTP----LLALMHAIGKLFPRPDRSPRIYPHREEDLRRALAAAGWR 76 (97)
T ss_pred eEeccCHHHHHHHHHHHHHhccCcEEEEEC---CCCH----HHHHHHHHhccCCCCCCCCcEEEeCHHHHHHHHHhCCCe
Confidence 678889999999999999975554444443 3332 33344555666665444332 24566667889998
Q ss_pred chh
Q 020507 267 QAV 269 (325)
Q Consensus 267 ~~~ 269 (325)
...
T Consensus 77 ~~r 79 (97)
T PF07109_consen 77 IGR 79 (97)
T ss_pred eee
Confidence 765
No 73
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=66.34 E-value=1.4e+02 Score=29.38 Aligned_cols=147 Identities=11% Similarity=0.093 Sum_probs=81.8
Q ss_pred ceEEEcCCCCchhhhhhcccCCCCcEEEEecchh-HHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEecccC
Q 020507 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIE-VTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (325)
Q Consensus 87 ~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~-vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL~ 165 (325)
..|+-+|||.=..+..+... .+++++=+|.-+ .++.=++.+.. -+..++..|..
T Consensus 169 ~rVLDIGcG~G~~a~~la~~--~g~~V~giDlS~~~l~~A~~~~~~-----------------------l~v~~~~~D~~ 223 (383)
T PRK11705 169 MRVLDIGCGWGGLARYAAEH--YGVSVVGVTISAEQQKLAQERCAG-----------------------LPVEIRLQDYR 223 (383)
T ss_pred CEEEEeCCCccHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHhcc-----------------------CeEEEEECchh
Confidence 57999999988888777654 356777777743 33322222211 12344444543
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCceEEEeecCCCCCHH--HHHHHHHHHhcCCC
Q 020507 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAF--GQQMIRNLESRGCA 243 (325)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~s~i~~d~i~p~d~f--g~~m~~~l~~~g~~ 243 (325)
+. ...|| ++++-+++.++.......+++.+.+...+|..++...+.....- .... +.+. -
T Consensus 224 ~l--------~~~fD-----~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~~~---i~~y--i 285 (383)
T PRK11705 224 DL--------NGQFD-----RIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVDPW---INKY--I 285 (383)
T ss_pred hc--------CCCCC-----EEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCCCC---ceee--e
Confidence 31 11344 56666777888888888999999998887766665544322100 0000 0000 0
Q ss_pred CCCCcCCCCHHHHHHHHHhCCCcchhhccHHHHHc
Q 020507 244 LLGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYS 278 (325)
Q Consensus 244 l~g~~~y~t~~~~~~r~~~~Gw~~~~~~d~~~~y~ 278 (325)
+++ ..+|+++...+. .+.||.+....++..-|.
T Consensus 286 fp~-g~lps~~~i~~~-~~~~~~v~d~~~~~~hy~ 318 (383)
T PRK11705 286 FPN-GCLPSVRQIAQA-SEGLFVMEDWHNFGADYD 318 (383)
T ss_pred cCC-CcCCCHHHHHHH-HHCCcEEEEEecChhhHH
Confidence 111 235677775554 446898776555554443
No 74
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=65.29 E-value=95 Score=27.15 Aligned_cols=138 Identities=12% Similarity=0.179 Sum_probs=75.0
Q ss_pred cceEEEcCCCCchhhhhhcccCCCCcEEEEecchhHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEecccC
Q 020507 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL~ 165 (325)
...|+-+|||.-.....+.... +...++=+|....+....+. .. ..+..++.+|+.
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~--~~---------------------~~~~~~~~~d~~ 90 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKT--KL---------------------SENVQFICGDAE 90 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHH--hc---------------------CCCCeEEecchh
Confidence 3579999999887655554432 44555666654322211111 00 125566777776
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCceEEEeecCCCCCHHHHHHHHHHHhcCCCCC
Q 020507 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRGCALL 245 (325)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~s~i~~d~i~p~d~fg~~m~~~l~~~g~~l~ 245 (325)
+. . +....--++++-.++.|+.. ...+++.+.+...++..+++....... +. .+...+...+
T Consensus 91 ~~-~---------~~~~~fD~vi~~~~l~~~~~--~~~~l~~~~~~L~~~G~l~~~~~~~~~-~~-~~~~~~~~~~---- 152 (240)
T TIGR02072 91 KL-P---------LEDSSFDLIVSNLALQWCDD--LSQALSELARVLKPGGLLAFSTFGPGT-LH-ELRQSFGQHG---- 152 (240)
T ss_pred hC-C---------CCCCceeEEEEhhhhhhccC--HHHHHHHHHHHcCCCcEEEEEeCCccC-HH-HHHHHHHHhc----
Confidence 53 1 22233457888888888743 567888888877766655554433322 11 1112222222
Q ss_pred CCcCCCCHHHHHHHHHhCCCcch
Q 020507 246 GINATPTLLAKEKLFLDQGWQQA 268 (325)
Q Consensus 246 g~~~y~t~~~~~~r~~~~Gw~~~ 268 (325)
..|.+.+...+.+.+. |...
T Consensus 153 --~~~~~~~~~~~~l~~~-f~~~ 172 (240)
T TIGR02072 153 --LRYLSLDELKALLKNS-FELL 172 (240)
T ss_pred --cCCCCHHHHHHHHHHh-cCCc
Confidence 2345666666666665 6544
No 75
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=64.30 E-value=1.1e+02 Score=27.43 Aligned_cols=117 Identities=10% Similarity=0.064 Sum_probs=70.3
Q ss_pred cceEEEcCCCCchhhhhhcccCCCCcEEEEecchhHHHHHHHHHhhchhhh--hhhcccccccccCCCccCCCeEEEecc
Q 020507 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELK--DKVGVTASISQAKGEVLGDNYKLLPVD 163 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~l~~~~~l~--~~lg~~~~~~~~~~~~~~~~~~~v~~D 163 (325)
...|+.+|||.-.-+-.|... +..+.=||+-++.-.+.. .+..... ..++. .......+++++-+|
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~--~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~D 102 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFF--AENGLTPTVTQQGE-------FTRYRAGNIEIFCGD 102 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHH--HHcCCCcceecccc-------ceeeecCceEEEEcc
Confidence 358999999987777777665 678888998665444321 1110000 00000 000124568888999
Q ss_pred cCCchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCceEEEeecC
Q 020507 164 LRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQI 223 (325)
Q Consensus 164 L~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~s~i~~d~i 223 (325)
+.+.+ .. .. ..| .+++-=++++-++++.-...++.+.+...+|..+++..+
T Consensus 103 ~~~~~-~~--~~-~~f-----D~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 103 FFALT-AA--DL-GPV-----DAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL 153 (213)
T ss_pred CCCCC-cc--cC-CCc-----CEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 98752 10 00 012 344445777899999999999999999988765554433
No 76
>PRK05785 hypothetical protein; Provisional
Probab=61.19 E-value=1.2e+02 Score=27.14 Aligned_cols=135 Identities=11% Similarity=0.148 Sum_probs=72.4
Q ss_pred ceEEEcCCCCchhhhhhcccCCCCcEEEEecch-hHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEecccC
Q 020507 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFI-EVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (325)
Q Consensus 87 ~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p-~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL~ 165 (325)
..|+-||||.=.....|... .+..++=+|+- ++++.-++ + ...+..|..
T Consensus 53 ~~VLDlGcGtG~~~~~l~~~--~~~~v~gvD~S~~Ml~~a~~---~-------------------------~~~~~~d~~ 102 (226)
T PRK05785 53 KKVLDVAAGKGELSYHFKKV--FKYYVVALDYAENMLKMNLV---A-------------------------DDKVVGSFE 102 (226)
T ss_pred CeEEEEcCCCCHHHHHHHHh--cCCEEEEECCCHHHHHHHHh---c-------------------------cceEEechh
Confidence 58999999998887777654 24678889984 44443211 0 012333443
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCceEEEeecCCCCCHHHHH----HHHHH----
Q 020507 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQ----MIRNL---- 237 (325)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~s~i~~d~i~p~d~fg~~----m~~~l---- 237 (325)
+. .+..+.--++++-.++.+++ +..+.++.+.+...+. .++.|.-.|...+.+. ..+.+
T Consensus 103 ~l----------p~~d~sfD~v~~~~~l~~~~--d~~~~l~e~~RvLkp~-~~ile~~~p~~~~~~~~~~~y~~~~~P~~ 169 (226)
T PRK05785 103 AL----------PFRDKSFDVVMSSFALHASD--NIEKVIAEFTRVSRKQ-VGFIAMGKPDNVIKRKYLSFYLRYIMPYI 169 (226)
T ss_pred hC----------CCCCCCEEEEEecChhhccC--CHHHHHHHHHHHhcCc-eEEEEeCCCCcHHHHHHHHHHHHHHHHHH
Confidence 32 12222223455555566654 3466777777766653 3355655665332221 11111
Q ss_pred ----HhcCCC---CC-CCcCCCCHHHHHHHHHhCC
Q 020507 238 ----ESRGCA---LL-GINATPTLLAKEKLFLDQG 264 (325)
Q Consensus 238 ----~~~g~~---l~-g~~~y~t~~~~~~r~~~~G 264 (325)
...... |. ++..+++.++..+.++++|
T Consensus 170 ~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~~~ 204 (226)
T PRK05785 170 ACLAGAKCRDYKYIYYIYERLPTNSFHREIFEKYA 204 (226)
T ss_pred HHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 110011 12 5667788888888887763
No 77
>PHA03412 putative methyltransferase; Provisional
Probab=59.92 E-value=8.3 Score=35.56 Aligned_cols=34 Identities=29% Similarity=0.394 Sum_probs=28.3
Q ss_pred ceEEEcCCCCchhhhhhcccC-CCCcEEEEecchh
Q 020507 87 KQILSLGAGFDTTYFQLQAEG-KAPHLYVELDFIE 120 (325)
Q Consensus 87 ~QVV~LGAGlDTr~~RL~~~~-~~~~~~~EvD~p~ 120 (325)
.-+..-|||-||-+||=.|.+ .+-+.+++|||-+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (241)
T PHA03412 194 GLEMNPGCGIDTGYYLEDWKGVKPLCEVVCMEFNE 228 (241)
T ss_pred CeeecCCCCccceeehhhccCCCccceEEEEeecC
Confidence 358899999999999999885 4567789999854
No 78
>PRK06922 hypothetical protein; Provisional
Probab=58.59 E-value=2.6e+02 Score=29.89 Aligned_cols=177 Identities=11% Similarity=0.152 Sum_probs=95.7
Q ss_pred cceEEEcCCCCchhhhhhcccCCCCcEEEEecchhHHHHHHHH-HhhchhhhhhhcccccccccCCCccCCCeEEEeccc
Q 020507 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAAL-IETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~-l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL 164 (325)
...|+-+|||.=.....|... .++..++=+|....+-.+.+. +... ..++.++.+|.
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~-~P~~kVtGIDIS~~MLe~Ararl~~~---------------------g~~ie~I~gDa 476 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEE-TEDKRIYGIDISENVIDTLKKKKQNE---------------------GRSWNVIKGDA 476 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHhhhc---------------------CCCeEEEEcch
Confidence 358999999986666666544 357888999997764444332 2211 23567777776
Q ss_pred CCchhHHHHHHhCCCCCCCCEEEEeecc----cccCC-------hHHHHHHHHHHHhcCCC-ceEEEeecCCCCCHH-H-
Q 020507 165 RDIQMLNEVINLANMDPSLPTFIIAECV----LIYLD-------PDSSRAIVGWASKTFST-AVFFLYEQIHPDDAF-G- 230 (325)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~Egv----l~YL~-------~~~~~~ll~~la~~f~~-~s~i~~d~i~p~d~f-g- 230 (325)
.+.. .. +.+..--++++=.+ +.|++ .+...++|+.+.+...+ |.+++.|.+.+.+.. .
T Consensus 477 ~dLp---~~-----fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~E~~~l~r 548 (677)
T PRK06922 477 INLS---SS-----FEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMTEDKRLMR 548 (677)
T ss_pred HhCc---cc-----cCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccCCchhHHH
Confidence 5521 11 22222223333222 23443 45678888888777755 566777876553221 1
Q ss_pred ------HHHHHHHHhcCCCCCCC-cCCC---------CHHHHHHHHHhCCC-cchhhccHHHHHcCCCCHHHHhHhhhc
Q 020507 231 ------QQMIRNLESRGCALLGI-NATP---------TLLAKEKLFLDQGW-QQAVAWDMLRVYSTFINPQERRRSTIV 292 (325)
Q Consensus 231 ------~~m~~~l~~~g~~l~g~-~~y~---------t~~~~~~r~~~~Gw-~~~~~~d~~~~y~~~l~~~er~ri~~l 292 (325)
..|...+.+....+.+. ..+. ...+..+.+..+-| .......+.+.|+.+.+.+-+.-++..
T Consensus 549 ~Irf~D~dgl~f~nR~~~~Fkgr~I~~~~l~~~~~~l~~~da~e~L~s~dwp~~~~~~E~~Eqfg~~t~~~~~~~~~~~ 627 (677)
T PRK06922 549 VIRFKDAGGMKFLEQYVQEFKGRIIQYEVLADNTVKMPVNDAMEFLYTYTWGEDSFVHEVQEQFGIFTPNDYKDFVKGI 627 (677)
T ss_pred HhccccchHHHHHHHHHhhccCcEEEeccccceEEEEecchHHHHHHhcCCCCcccHHHHHHHHcCCCHHHHHHHHhhc
Confidence 01222222222223321 0111 12566777888888 445566677888886554455544433
No 79
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=57.81 E-value=56 Score=32.94 Aligned_cols=125 Identities=16% Similarity=0.209 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcCCCcceEEEcCCCCchhhhhhcccC---CCCcEEEEecc--hhHHHHHHHHHhhchhh
Q 020507 61 RWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEG---KAPHLYVELDF--IEVTSKKAALIETHGEL 135 (325)
Q Consensus 61 R~~~id~~i~~Fl~~~~~~~~~~~~~~QVV~LGAGlDTr~~RL~~~~---~~~~~~~EvD~--p~vi~~K~~~l~~~~~l 135 (325)
|...-.+.|.+.+.+...........+.|+.+|||-=++..+-.... ....++|=|.- -.++..|+ ++..+.
T Consensus 162 KY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~-~v~~n~-- 238 (448)
T PF05185_consen 162 KYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQK-RVNANG-- 238 (448)
T ss_dssp HHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHH-HHHHTT--
T ss_pred HHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHH-HHHhcC--
Confidence 44444455555555443211100124679999999999965532220 12456666654 34444443 334321
Q ss_pred hhhhcccccccccCCCccCCCeEEEecccCCchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCc
Q 020507 136 KDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTA 215 (325)
Q Consensus 136 ~~~lg~~~~~~~~~~~~~~~~~~~v~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~ 215 (325)
+ .+++++|..|.++.+ +. .+-=++|+|.+=.++..+-+-+.|....+...++
T Consensus 239 ----------------w-~~~V~vi~~d~r~v~-lp----------ekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~ 290 (448)
T PF05185_consen 239 ----------------W-GDKVTVIHGDMREVE-LP----------EKVDIIVSELLGSFGDNELSPECLDAADRFLKPD 290 (448)
T ss_dssp ----------------T-TTTEEEEES-TTTSC-HS----------S-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEE
T ss_pred ----------------C-CCeEEEEeCcccCCC-CC----------CceeEEEEeccCCccccccCHHHHHHHHhhcCCC
Confidence 1 577999999999962 22 2455999999988888888888887776644443
Q ss_pred e
Q 020507 216 V 216 (325)
Q Consensus 216 s 216 (325)
.
T Consensus 291 G 291 (448)
T PF05185_consen 291 G 291 (448)
T ss_dssp E
T ss_pred C
Confidence 3
No 80
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=57.07 E-value=46 Score=30.52 Aligned_cols=116 Identities=19% Similarity=0.243 Sum_probs=62.1
Q ss_pred cceEEEcCCCCchhhhhhccc-CCCCcEEEEecchhHHHHHHHHHhhchhhhhhhccccccc--ccCC----CccCC-Ce
Q 020507 86 KKQILSLGAGFDTTYFQLQAE-GKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASIS--QAKG----EVLGD-NY 157 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~-~~~~~~~~EvD~p~vi~~K~~~l~~~~~l~~~lg~~~~~~--~~~~----~~~~~-~~ 157 (325)
.+.|++||.|-=..+..+... ....++++|+|- +|++.=++.+.....- + .++... ..++ .-..+ .|
T Consensus 77 p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~-~Vv~~a~~~f~~~~~~---~-~d~r~~i~~~Dg~~~l~~~~~~~y 151 (246)
T PF01564_consen 77 PKRVLIIGGGDGGTARELLKHPPVESITVVEIDP-EVVELARKYFPEFSEG---L-DDPRVRIIIGDGRKFLKETQEEKY 151 (246)
T ss_dssp T-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-H-HHHHHHHHHTHHHHTT---G-GSTTEEEEESTHHHHHHTSSST-E
T ss_pred cCceEEEcCCChhhhhhhhhcCCcceEEEEecCh-HHHHHHHHhchhhccc---c-CCCceEEEEhhhHHHHHhccCCcc
Confidence 577888887655554444332 124788999996 4555555555432110 0 001100 1111 01123 79
Q ss_pred EEEecccCCch---------h----HHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCC
Q 020507 158 KLLPVDLRDIQ---------M----LNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFS 213 (325)
Q Consensus 158 ~~v~~DL~~~~---------~----l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~ 213 (325)
..|-+|+.++. + +.+.|...| +++..+-..++.++....+.+.+.+.|+
T Consensus 152 DvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~G-------v~v~~~~~~~~~~~~~~~i~~tl~~~F~ 213 (246)
T PF01564_consen 152 DVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDG-------VLVLQAGSPFLHPELFKSILKTLRSVFP 213 (246)
T ss_dssp EEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEE-------EEEEEEEETTTTHHHHHHHHHHHHTTSS
T ss_pred cEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCc-------EEEEEccCcccchHHHHHHHHHHHHhCC
Confidence 99999998841 1 222333323 3444445567788888888999998887
No 81
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=55.08 E-value=1.2e+02 Score=25.73 Aligned_cols=58 Identities=17% Similarity=0.224 Sum_probs=37.1
Q ss_pred cceEEEcCCCCchhhhhhcccCCCCcEEEEecchhHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEecccC
Q 020507 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL~ 165 (325)
...|+-+|||.=.....+... ...+..+|+|- ..++.-++.+.. ..+..++..|+.
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~-~~~~~~~~~~~~----------------------~~~v~ii~~D~~ 69 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLER-AARVTAIEIDP-RLAPRLREKFAA----------------------ADNLTVIHGDAL 69 (169)
T ss_pred cCEEEEECCCccHHHHHHHhc-CCeEEEEECCH-HHHHHHHHHhcc----------------------CCCEEEEECchh
Confidence 358999999987766666554 24677788884 333332332221 346788888887
Q ss_pred Cc
Q 020507 166 DI 167 (325)
Q Consensus 166 ~~ 167 (325)
+.
T Consensus 70 ~~ 71 (169)
T smart00650 70 KF 71 (169)
T ss_pred cC
Confidence 74
No 82
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=54.37 E-value=4.6 Score=30.88 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=19.6
Q ss_pred EEEeecccccCChHHHHHHHHHHHhcCCCceE
Q 020507 186 FIIAECVLIYLDPDSSRAIVGWASKTFSTAVF 217 (325)
Q Consensus 186 l~i~Egvl~YL~~~~~~~ll~~la~~f~~~s~ 217 (325)
++++=.|+.|+ +....+++.+.+...+|..
T Consensus 69 ~V~~~~vl~~l--~~~~~~l~~~~~~L~pgG~ 98 (99)
T PF08242_consen 69 LVVASNVLHHL--EDIEAVLRNIYRLLKPGGI 98 (99)
T ss_dssp EEEEE-TTS----S-HHHHHHHHTTT-TSS-E
T ss_pred eehhhhhHhhh--hhHHHHHHHHHHHcCCCCC
Confidence 66677999999 7777999999998877654
No 83
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=54.07 E-value=1.7e+02 Score=26.33 Aligned_cols=109 Identities=12% Similarity=0.103 Sum_probs=69.1
Q ss_pred ceEEEcCCCCchhhhhhcccCCCCcEEEEecchhHHHHHHHHHhhchhhhh--hhcccccccccCCCccCCCeEEEeccc
Q 020507 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKD--KVGVTASISQAKGEVLGDNYKLLPVDL 164 (325)
Q Consensus 87 ~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~l~~~~~l~~--~lg~~~~~~~~~~~~~~~~~~~v~~DL 164 (325)
..|+.+|||.-.-+-.|... +..+.=||+-++.-.|.. .+...... ..|.. ......+.++.-+|+
T Consensus 39 ~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~--~~~~l~~~~~~~~~~-------~~~~~~~v~~~~~D~ 106 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFF--AENGLTPQTRQSGEF-------EHYQAGEITIYCGDF 106 (218)
T ss_pred CeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHH--HHcCCCccccccccc-------cccccCceEEEECcc
Confidence 57999999998777778765 678888888765444421 11100000 00000 011245677788888
Q ss_pred CCchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCce
Q 020507 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAV 216 (325)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~s 216 (325)
.+... . +...=.+++-.++++-++++.=...++.+.+...+|.
T Consensus 107 ~~l~~--~-------~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG 149 (218)
T PRK13255 107 FALTA--A-------DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGC 149 (218)
T ss_pred cCCCc--c-------cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCC
Confidence 87410 0 0112257777888999999999999999999887764
No 84
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=52.58 E-value=1.5e+02 Score=25.44 Aligned_cols=107 Identities=12% Similarity=0.110 Sum_probs=56.0
Q ss_pred cceEEEcCCCCchhhhhhcccCCCCcEEEEecchhHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEecccC
Q 020507 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL~ 165 (325)
..+|+-+|||-=....-+.........++=+|.-+.. . ..+..++..|+.
T Consensus 33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~----------------------~~~i~~~~~d~~ 82 (188)
T TIGR00438 33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------P----------------------IENVDFIRGDFT 82 (188)
T ss_pred CCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------c----------------------CCCceEEEeeCC
Confidence 4689999999876543332221123345555554422 1 123567777887
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEeeccccc-----CC----hHHHHHHHHHHHhcCCCceEEEeecCC
Q 020507 166 DIQMLNEVINLANMDPSLPTFIIAECVLIY-----LD----PDSSRAIVGWASKTFSTAVFFLYEQIH 224 (325)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~Y-----L~----~~~~~~ll~~la~~f~~~s~i~~d~i~ 224 (325)
+.+ ..+.+.. .+..+..-++++.+...+ +. .+....+++.+.+...+|..++.+...
T Consensus 83 ~~~-~~~~l~~-~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 83 DEE-VLNKIRE-RVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred Chh-HHHHHHH-HhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 753 2222322 122334456666554221 11 123467788888877766666655433
No 85
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=52.26 E-value=1.3e+02 Score=27.67 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=28.0
Q ss_pred cceEEEcCCCCchhhhhhccc-CCCCcEEEEecchhHHHHHHHHHhh
Q 020507 86 KKQILSLGAGFDTTYFQLQAE-GKAPHLYVELDFIEVTSKKAALIET 131 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~-~~~~~~~~EvD~p~vi~~K~~~l~~ 131 (325)
...|+.||||-=.....+... ....+..+|+| |++++.-++.+..
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid-~~vi~~a~~~~~~ 118 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDID-EKVIELSKKFLPS 118 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCC-HHHHHHHHHHhHh
Confidence 458999999976654444222 12468899998 4555555555543
No 86
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=49.63 E-value=2.2e+02 Score=26.81 Aligned_cols=126 Identities=16% Similarity=0.139 Sum_probs=75.8
Q ss_pred cceEEEcCCCCchhhhhhcccC---CCCcEEEEecchh-HHHHHHHHHhh-chhhhhhhcccccccccCCCccCCCeEEE
Q 020507 86 KKQILSLGAGFDTTYFQLQAEG---KAPHLYVELDFIE-VTSKKAALIET-HGELKDKVGVTASISQAKGEVLGDNYKLL 160 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~---~~~~~~~EvD~p~-vi~~K~~~l~~-~~~l~~~lg~~~~~~~~~~~~~~~~~~~v 160 (325)
.+..|-||+|..|-.-+|.... ..-.+|+-||..+ +++.-.+.|.. .| .=...-+
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~--------------------~l~v~~l 138 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYP--------------------GLEVNAL 138 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCC--------------------CCeEeeh
Confidence 6899999999999877764431 1246788888864 44444444433 21 1112223
Q ss_pred ecccCCchhHHHHHHhCCCCCCCCEEEEee-cccccCChHHHHHHHHHHHhcCCCceE--EEeecCCCC--------C--
Q 020507 161 PVDLRDIQMLNEVINLANMDPSLPTFIIAE-CVLIYLDPDSSRAIVGWASKTFSTAVF--FLYEQIHPD--------D-- 227 (325)
Q Consensus 161 ~~DL~~~~~l~~~L~~~g~d~~~PTl~i~E-gvl~YL~~~~~~~ll~~la~~f~~~s~--i~~d~i~p~--------d-- 227 (325)
+.|+ +..|... ...-.-+|+.- --|--|+|++...++..+.....+|-. +..|.++|. |
T Consensus 139 ~~~~------~~~La~~--~~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k~Ae~Le~AYdDp~ 210 (321)
T COG4301 139 CGDY------ELALAEL--PRGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRKPAERLEAAYDDPQ 210 (321)
T ss_pred hhhH------HHHHhcc--cCCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccCHHHHHHHhhcCcc
Confidence 3343 3344332 22233455544 456789999999999999998877643 346777763 3
Q ss_pred ----HHHHHHHHHHHh
Q 020507 228 ----AFGQQMIRNLES 239 (325)
Q Consensus 228 ----~fg~~m~~~l~~ 239 (325)
.|..-|..++..
T Consensus 211 gVTa~FnlNvLa~lNr 226 (321)
T COG4301 211 GVTAEFNLNVLAHLNR 226 (321)
T ss_pred chHHHHHHHHHHHHHH
Confidence 355566666643
No 87
>PTZ00146 fibrillarin; Provisional
Probab=49.54 E-value=2.4e+02 Score=26.85 Aligned_cols=135 Identities=16% Similarity=0.143 Sum_probs=69.7
Q ss_pred ceEEEcCCCCchhhhhhcccCCCCcEEEEecchhHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEecccCC
Q 020507 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRD 166 (325)
Q Consensus 87 ~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL~~ 166 (325)
.-|+-||||.=+..--+...--+.-.+|=||+.+-+. +.++.... ...|...+-.|.++
T Consensus 134 ~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~--~dLl~~ak-------------------~r~NI~~I~~Da~~ 192 (293)
T PTZ00146 134 SKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSG--RDLTNMAK-------------------KRPNIVPIIEDARY 192 (293)
T ss_pred CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHH--HHHHHHhh-------------------hcCCCEEEECCccC
Confidence 4699999998776555544310133678788754222 12222210 02467777788876
Q ss_pred chhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCceEEEeecCCCCCHHHHHHHHHHHhcCCCCCC
Q 020507 167 IQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRGCALLG 246 (325)
Q Consensus 167 ~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~s~i~~d~i~p~d~fg~~m~~~l~~~g~~l~g 246 (325)
+..... + ....-.+|+. . ..+++.+.++..+...+.++..++.+ +.. .+
T Consensus 193 p~~y~~-~-----~~~vDvV~~D-v----a~pdq~~il~~na~r~LKpGG~~vI~-ika-------------------~~ 241 (293)
T PTZ00146 193 PQKYRM-L-----VPMVDVIFAD-V----AQPDQARIVALNAQYFLKNGGHFIIS-IKA-------------------NC 241 (293)
T ss_pred hhhhhc-c-----cCCCCEEEEe-C----CCcchHHHHHHHHHHhccCCCEEEEE-Eec-------------------cc
Confidence 422211 1 1122233322 1 14667777777777666665444443 221 11
Q ss_pred CcCCCCHHHH----HHHHHhCCCcchhhccH
Q 020507 247 INATPTLLAK----EKLFLDQGWQQAVAWDM 273 (325)
Q Consensus 247 ~~~y~t~~~~----~~r~~~~Gw~~~~~~d~ 273 (325)
++.-+++++. .+.+++.||+..+..++
T Consensus 242 id~g~~pe~~f~~ev~~L~~~GF~~~e~v~L 272 (293)
T PTZ00146 242 IDSTAKPEVVFASEVQKLKKEGLKPKEQLTL 272 (293)
T ss_pred cccCCCHHHHHHHHHHHHHHcCCceEEEEec
Confidence 2222333332 57788889987765544
No 88
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=49.46 E-value=2.1e+02 Score=26.44 Aligned_cols=110 Identities=12% Similarity=0.120 Sum_probs=63.5
Q ss_pred cceEEEcC--CCCchhhhhhcccCCCCcEEEEecchhHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEecc
Q 020507 86 KKQILSLG--AGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVD 163 (325)
Q Consensus 86 ~~QVV~LG--AGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~D 163 (325)
.+.|+-+| +|+-|..+-...+....+.-+|.| |+..+.-++.+.+. | + .++..++..|
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~-~~~~~~Ar~~~~~a-------g-----------~-~~~I~~~~G~ 139 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDIN-RENYELGLPVIQKA-------G-----------V-AHKIDFREGP 139 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCC-HHHHHHHHHHHHHC-------C-----------C-CCceEEEecc
Confidence 56899998 677777554433211356677776 56677777777763 1 1 4677888777
Q ss_pred cCCchhHHHHHHhCC-CCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCceEEEeecCC
Q 020507 164 LRDIQMLNEVINLAN-MDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIH 224 (325)
Q Consensus 164 L~~~~~l~~~L~~~g-~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~s~i~~d~i~ 224 (325)
..+ .+. .|...| ....---+||= =....-...+..+-.+..+|..|++|.+.
T Consensus 140 a~e--~L~-~l~~~~~~~~~fD~iFiD------adK~~Y~~y~~~~l~ll~~GGviv~DNvl 192 (247)
T PLN02589 140 ALP--VLD-QMIEDGKYHGTFDFIFVD------ADKDNYINYHKRLIDLVKVGGVIGYDNTL 192 (247)
T ss_pred HHH--HHH-HHHhccccCCcccEEEec------CCHHHhHHHHHHHHHhcCCCeEEEEcCCC
Confidence 655 233 343221 01111122222 22444455566666778889999999764
No 89
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=49.43 E-value=1.7e+02 Score=25.20 Aligned_cols=141 Identities=12% Similarity=0.021 Sum_probs=73.0
Q ss_pred ceEEEcCCCCchhhhhhcccCCCCcEEEEecchhHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEecccCC
Q 020507 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRD 166 (325)
Q Consensus 87 ~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL~~ 166 (325)
..|+-+|||.-.....+... .+...+-||.-+-.-.+.+ + .+..++..|+.+
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~i~~a~---~-----------------------~~~~~~~~d~~~ 66 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDE--KQVRGYGIEIDQDGVLACV---A-----------------------RGVNVIQGDLDE 66 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhc--cCCcEEEEeCCHHHHHHHH---H-----------------------cCCeEEEEEhhh
Confidence 57999999998776666433 2344566665332211111 1 124456666654
Q ss_pred chhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCceEEEeecCCCCCHHHHHHHHHHHhcCC----
Q 020507 167 IQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRGC---- 242 (325)
Q Consensus 167 ~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~s~i~~d~i~p~d~fg~~m~~~l~~~g~---- 242 (325)
. +. .+..+.--++++-.++.+++. ...+++.+.+.... ++... |+..+...-...+.....
T Consensus 67 ~--l~------~~~~~sfD~Vi~~~~l~~~~d--~~~~l~e~~r~~~~---~ii~~--p~~~~~~~~~~~~~~~~~~~~~ 131 (194)
T TIGR02081 67 G--LE------AFPDKSFDYVILSQTLQATRN--PEEILDEMLRVGRH---AIVSF--PNFGYWRVRWSILTKGRMPVTG 131 (194)
T ss_pred c--cc------ccCCCCcCEEEEhhHhHcCcC--HHHHHHHHHHhCCe---EEEEc--CChhHHHHHHHHHhCCccccCC
Confidence 1 11 011222337777788888853 55567776664332 22221 322121111111111111
Q ss_pred ----CCCC--CcCCCCHHHHHHHHHhCCCcchhh
Q 020507 243 ----ALLG--INATPTLLAKEKLFLDQGWQQAVA 270 (325)
Q Consensus 243 ----~l~g--~~~y~t~~~~~~r~~~~Gw~~~~~ 270 (325)
++.. ...+.+.++..+.+.++||+.+..
T Consensus 132 ~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~~~ 165 (194)
T TIGR02081 132 ELPYDWYNTPNIHFCTIADFEDLCGELNLRILDR 165 (194)
T ss_pred CCCccccCCCCcccCcHHHHHHHHHHCCCEEEEE
Confidence 1211 235778999999999999998764
No 90
>PHA03411 putative methyltransferase; Provisional
Probab=47.54 E-value=18 Score=34.08 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=27.8
Q ss_pred ceEEEcCCCCchhhhhhcccC-CCCcEEEEecchh
Q 020507 87 KQILSLGAGFDTTYFQLQAEG-KAPHLYVELDFIE 120 (325)
Q Consensus 87 ~QVV~LGAGlDTr~~RL~~~~-~~~~~~~EvD~p~ 120 (325)
.-+.--|||-||-+||=.|.+ .+-+.+++|||-+
T Consensus 206 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (279)
T PHA03411 206 GLVTYAGCGIDTSIYRDEWHSTNVLTEVVEVRYYE 240 (279)
T ss_pred CcEecCCCCcccceehhhccCCCccceEEEEEecc
Confidence 357788999999999999885 4567789999854
No 91
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=47.02 E-value=23 Score=31.54 Aligned_cols=57 Identities=18% Similarity=0.348 Sum_probs=39.3
Q ss_pred CCCeEEEecccCCchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCceEEEe
Q 020507 154 GDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLY 220 (325)
Q Consensus 154 ~~~~~~v~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~s~i~~ 220 (325)
..++.+...||.+...... .|| ++++=-||+|++++...++++.+.+...+|.+++.
T Consensus 117 r~~V~F~~~NL~~~~~~~~-----~fD-----~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~l 173 (196)
T PF01739_consen 117 RKMVRFRRHNLLDPDPPFG-----RFD-----LIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFL 173 (196)
T ss_dssp HTTEEEEE--TT-S-----------EE-----EEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred cCceEEEecccCCCCcccC-----Ccc-----EEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 5677888888877211111 344 89999999999999999999999999988887775
No 92
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=43.39 E-value=23 Score=33.46 Aligned_cols=58 Identities=14% Similarity=0.185 Sum_probs=43.0
Q ss_pred CCCeEEEecccCCchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCceEEEe
Q 020507 154 GDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLY 220 (325)
Q Consensus 154 ~~~~~~v~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~s~i~~ 220 (325)
...+++-..||.+. .+.. ...|| ++++..|++|++++.-.++++.+.+...+|.+++.
T Consensus 203 r~~V~F~~~NL~~~-~~~~---~~~fD-----~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~l 260 (287)
T PRK10611 203 ANYVDFQQLNLLAK-QWAV---PGPFD-----AIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFA 260 (287)
T ss_pred HccCEEEcccCCCC-CCcc---CCCcc-----eeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 35566777777663 2210 11354 88889999999999999999999999988777664
No 93
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=43.37 E-value=1.3e+02 Score=29.28 Aligned_cols=60 Identities=13% Similarity=0.102 Sum_probs=40.4
Q ss_pred CCCEEEEeecccccCChHHHHHHHHHHHhcCCCceEEEeecCCCCCHHHHHHHHHHHhcCCC
Q 020507 182 SLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRGCA 243 (325)
Q Consensus 182 ~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~s~i~~d~i~p~d~fg~~m~~~l~~~g~~ 243 (325)
...|+++-=|--..|+++...+|++.+.+.+++...+..| .+|.+ +.....+.+++.|+.
T Consensus 56 ~~~tiy~GGGTPs~L~~~~l~~ll~~i~~~~~~~~eitiE-~nP~~-lt~e~l~~lk~~G~n 115 (353)
T PRK05904 56 QFKTIYLGGGTPNCLNDQLLDILLSTIKPYVDNNCEFTIE-CNPEL-ITQSQINLLKKNKVN 115 (353)
T ss_pred CeEEEEECCCccccCCHHHHHHHHHHHHHhcCCCCeEEEE-eccCc-CCHHHHHHHHHcCCC
Confidence 3567888888888889999999999888887766666666 35542 223344555555554
No 94
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=42.90 E-value=2.7e+02 Score=29.78 Aligned_cols=127 Identities=16% Similarity=0.176 Sum_probs=71.4
Q ss_pred ccchhHHHHHHHHHHHHHHhcCCCCCCcCCCcceEEEcCCCCchhhhhhcccCCCCcEEEEecchhHHHHHHHHHhhchh
Q 020507 55 NRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGE 134 (325)
Q Consensus 55 nrg~~~R~~~id~~i~~Fl~~~~~~~~~~~~~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~l~~~~~ 134 (325)
+.|.++-..-.|..+.++.. .+.|++||||.=....-+...+...++.+|++-..+-..|+.+-.+
T Consensus 519 ~tG~flDqr~~R~~~~~~~~-----------g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~n--- 584 (702)
T PRK11783 519 DTGLFLDHRPTRRMIGQMAK-----------GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALN--- 584 (702)
T ss_pred cceECHHHHHHHHHHHHhcC-----------CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh---
Confidence 34667655555555544431 2579999999988877766543234677777777666666555332
Q ss_pred hhhhhcccccccccCCCccCCCeEEEecccCCchhHHHHHHhCCCCCCCCEEEEeecccccCC-----------hHHHHH
Q 020507 135 LKDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLD-----------PDSSRA 203 (325)
Q Consensus 135 l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~-----------~~~~~~ 203 (325)
| +...+.+++..|..+ |.+.+ ...|| ++|+- -.|+. ...-..
T Consensus 585 -----g-----------~~~~~v~~i~~D~~~---~l~~~-~~~fD-----lIilD--PP~f~~~~~~~~~~~~~~~y~~ 637 (702)
T PRK11783 585 -----G-----------LSGRQHRLIQADCLA---WLKEA-REQFD-----LIFID--PPTFSNSKRMEDSFDVQRDHVA 637 (702)
T ss_pred -----C-----------CCccceEEEEccHHH---HHHHc-CCCcC-----EEEEC--CCCCCCCCccchhhhHHHHHHH
Confidence 1 112578888888765 33322 11233 22221 11111 123456
Q ss_pred HHHHHHhcCCCceEEEeec
Q 020507 204 IVGWASKTFSTAVFFLYEQ 222 (325)
Q Consensus 204 ll~~la~~f~~~s~i~~d~ 222 (325)
++..+.+...+|..++++.
T Consensus 638 l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 638 LIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred HHHHHHHHcCCCCEEEEEe
Confidence 7777777777766666654
No 95
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=42.59 E-value=1.2e+02 Score=30.17 Aligned_cols=61 Identities=13% Similarity=0.210 Sum_probs=47.0
Q ss_pred CCCCEEEEeecccccCChHHHHHHHHHHHhcCC---CceEEEeecCCCCCHHHHHHHHHHHhcCCC
Q 020507 181 PSLPTFIIAECVLIYLDPDSSRAIVGWASKTFS---TAVFFLYEQIHPDDAFGQQMIRNLESRGCA 243 (325)
Q Consensus 181 ~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~---~~s~i~~d~i~p~d~fg~~m~~~l~~~g~~ 243 (325)
...-|+++-=|-=.+|++++...|++.+.+.|+ +...+..|. +|.+ +...+.+.++..|..
T Consensus 86 ~~v~ti~~GGGTPslL~~~~l~~ll~~l~~~~~~~~~~~EitiE~-nP~~-~~~e~~~~l~~~GvN 149 (416)
T COG0635 86 REVKTIYFGGGTPSLLSPEQLERLLKALRELFNDLDPDAEITIEA-NPGT-VEAEKFKALKEAGVN 149 (416)
T ss_pred CeEEEEEECCCccccCCHHHHHHHHHHHHHhcccCCCCceEEEEe-CCCC-CCHHHHHHHHHcCCC
Confidence 358899999999999999999999999999993 347788886 7763 334455666665555
No 96
>COG3580 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.75 E-value=40 Score=32.30 Aligned_cols=47 Identities=21% Similarity=0.280 Sum_probs=31.9
Q ss_pred HHHHHhcCCCCCCcCCCcceEEEcCCCCchhhhhhccc---CCCCc-EEEEecchh
Q 020507 69 LYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAE---GKAPH-LYVELDFIE 120 (325)
Q Consensus 69 i~~Fl~~~~~~~~~~~~~~QVV~LGAGlDTr~~RL~~~---~~~~~-~~~EvD~p~ 120 (325)
..+|..++++-. -+|++|.|||+|.--.-+-.. +.+.+ ++.+||--.
T Consensus 264 AA~fvak~~nle-----gV~l~SFgCG~Davttd~i~eIl~~~nk~ytvlkIDE~t 314 (351)
T COG3580 264 AAKFVAKHPNLE-----GVQLVSFGCGLDAVTTDLIEEILEGHNKIYTVLKIDEGT 314 (351)
T ss_pred HHHHHhcCCCee-----eEEEeecccCcchhHHHHHHHHHHhCCCeeEEEEecCCC
Confidence 348998887532 479999999999875543211 02335 889999653
No 97
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=40.40 E-value=2.5e+02 Score=24.38 Aligned_cols=26 Identities=8% Similarity=0.100 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhcCCCceEEEeecCC
Q 020507 199 DSSRAIVGWASKTFSTAVFFLYEQIH 224 (325)
Q Consensus 199 ~~~~~ll~~la~~f~~~s~i~~d~i~ 224 (325)
.....+++.+.+...+|..++++...
T Consensus 122 ~~~~~~l~~~~~~LkpgG~lv~~~~~ 147 (198)
T PRK00377 122 EKLKEIISASWEIIKKGGRIVIDAIL 147 (198)
T ss_pred ccHHHHHHHHHHHcCCCcEEEEEeec
Confidence 44567888888877777777776543
No 98
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=39.30 E-value=3.9e+02 Score=26.39 Aligned_cols=150 Identities=11% Similarity=0.085 Sum_probs=77.5
Q ss_pred cchhHHHHHHHHHHHHHHhcCCCCCCcCCCcceEEEcCCCCchhhhhhcccCCCCcEEEEecchhHHHHHHHHHhhchhh
Q 020507 56 RGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGEL 135 (325)
Q Consensus 56 rg~~~R~~~id~~i~~Fl~~~~~~~~~~~~~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~l~~~~~l 135 (325)
-|.++-....+..+.++.. .+.|+.||||.=....-....+...+..+|++-..+-..|+.+-.+
T Consensus 202 tG~flDqr~~R~~~~~~~~-----------g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~N---- 266 (396)
T PRK15128 202 TGYYLDQRDSRLATRRYVE-----------NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELN---- 266 (396)
T ss_pred cCcChhhHHHHHHHHHhcC-----------CCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc----
Confidence 3566655555555555421 3679999999877654432232246777788766655444433221
Q ss_pred hhhhcccccccccCCCccCCCeEEEecccCCchhHHHHHHhC--CCCCCCCEEEEeecccccCChH---------HHHHH
Q 020507 136 KDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLA--NMDPSLPTFIIAECVLIYLDPD---------SSRAI 204 (325)
Q Consensus 136 ~~~lg~~~~~~~~~~~~~~~~~~~v~~DL~~~~~l~~~L~~~--g~d~~~PTl~i~Egvl~YL~~~---------~~~~l 204 (325)
| +...+.+++..|+.+ +...+... .|| ++|+- -.|+... ....+
T Consensus 267 ----g-----------l~~~~v~~i~~D~~~---~l~~~~~~~~~fD-----lVilD--PP~f~~~k~~l~~~~~~y~~l 321 (396)
T PRK15128 267 ----K-----------LDLSKAEFVRDDVFK---LLRTYRDRGEKFD-----VIVMD--PPKFVENKSQLMGACRGYKDI 321 (396)
T ss_pred ----C-----------CCCCcEEEEEccHHH---HHHHHHhcCCCCC-----EEEEC--CCCCCCChHHHHHHHHHHHHH
Confidence 1 112467888888865 33333321 233 33321 1232221 23344
Q ss_pred HHHHHhcCCCc-eEEEeecCC--CCCHHHHHHHHHHHhcCCCCC
Q 020507 205 VGWASKTFSTA-VFFLYEQIH--PDDAFGQQMIRNLESRGCALL 245 (325)
Q Consensus 205 l~~la~~f~~~-s~i~~d~i~--p~d~fg~~m~~~l~~~g~~l~ 245 (325)
++...+...+| .++.+.+-. ..+.|-+.+.+...+.|..+.
T Consensus 322 ~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~ 365 (396)
T PRK15128 322 NMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQ 365 (396)
T ss_pred HHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEE
Confidence 44555556554 445454432 224566666666666665544
No 99
>PF08557 Lipid_DES: Sphingolipid Delta4-desaturase (DES); InterPro: IPR013866 Sphingolipids are important membrane signalling molecules involved in many different cellular functions in eukaryotes. Sphingolipid delta 4-desaturase catalyses the formation of (E)-sphing-4-enine []. Some proteins in this entry have bifunctional delta 4-desaturase/C-4-hydroxylase activity. Delta 4-desaturated sphingolipids may play a role in early signalling required for entry into meiotic and spermatid differentiation pathways during Drosophila spermatogenesis []. This small protein associates with FA_desaturase IPR005804 from INTERPRO and appears to be specific to sphingolipid delta 4-desaturase. ; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=39.29 E-value=36 Score=22.31 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=26.1
Q ss_pred CCcEEEEecchhHHHHHHHHHhhchhhhhhhccc
Q 020507 109 APHLYVELDFIEVTSKKAALIETHGELKDKVGVT 142 (325)
Q Consensus 109 ~~~~~~EvD~p~vi~~K~~~l~~~~~l~~~lg~~ 142 (325)
.+..|..-|-|.. .+++++|+++|+++.+.|.+
T Consensus 4 ~DF~W~~~~ePH~-~RRk~IL~k~PeIk~L~G~d 36 (39)
T PF08557_consen 4 NDFEWVYTDEPHA-SRRKEILKKHPEIKKLMGPD 36 (39)
T ss_pred cccEEeCCCCccH-HHHHHHHHhChHHHHHhCCC
Confidence 3567888888875 56677899999999999864
No 100
>PLN02823 spermine synthase
Probab=38.80 E-value=2.8e+02 Score=26.77 Aligned_cols=121 Identities=12% Similarity=0.148 Sum_probs=61.9
Q ss_pred cceEEEcCCCCchhhhhhcc-cCCCCcEEEEecchhHHHHHHHHHhhc------hhhhhhhcccccccccCCCccCCCeE
Q 020507 86 KKQILSLGAGFDTTYFQLQA-EGKAPHLYVELDFIEVTSKKAALIETH------GELKDKVGVTASISQAKGEVLGDNYK 158 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~-~~~~~~~~~EvD~p~vi~~K~~~l~~~------~~l~~~lg~~~~~~~~~~~~~~~~~~ 158 (325)
.+.|++||+|-=..+..+.. .....+..+|+|-. |++.=++.+... |.++-..+.-.... .....+|.
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~-vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L----~~~~~~yD 178 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQE-VVDFCRKHLTVNREAFCDKRLELIINDARAEL----EKRDEKFD 178 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHH-HHHHHHHhcccccccccCCceEEEEChhHHHH----hhCCCCcc
Confidence 56799999986666544332 21246889999974 455444444321 11110111000000 11245788
Q ss_pred EEecccCCch-----------hHHH-HHHhCCCCCCCCEEEEeecccc--cCChHHHHHHHHHHHhcCCC
Q 020507 159 LLPVDLRDIQ-----------MLNE-VINLANMDPSLPTFIIAECVLI--YLDPDSSRAIVGWASKTFST 214 (325)
Q Consensus 159 ~v~~DL~~~~-----------~l~~-~L~~~g~d~~~PTl~i~Egvl~--YL~~~~~~~ll~~la~~f~~ 214 (325)
+|-+|+.|+. ++.+ .+.. -+.++. +++.++... ....+....+++.+.+.|+.
T Consensus 179 vIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~-~L~p~G--vlv~q~~s~~~~~~~~~~~~i~~tl~~vF~~ 245 (336)
T PLN02823 179 VIIGDLADPVEGGPCYQLYTKSFYERIVKP-KLNPGG--IFVTQAGPAGILTHKEVFSSIYNTLRQVFKY 245 (336)
T ss_pred EEEecCCCccccCcchhhccHHHHHHHHHH-hcCCCc--EEEEeccCcchhccHHHHHHHHHHHHHhCCC
Confidence 8888876631 1222 2222 233332 344444332 22466678888888888875
No 101
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=38.06 E-value=3.1e+02 Score=24.79 Aligned_cols=110 Identities=12% Similarity=0.120 Sum_probs=60.8
Q ss_pred cceEEEcC--CCCchhhhhhcccCCCCcEEEEecchhHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEecc
Q 020507 86 KKQILSLG--AGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVD 163 (325)
Q Consensus 86 ~~QVV~LG--AGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~D 163 (325)
.+.|+.+| +|+.+..+-...+....+..+|+|-.. ++.=++.+++. | + .++++++-.|
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~-~~~A~~n~~~~-------g-----------l-~~~i~~~~gd 128 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEA-YEVGLEFIKKA-------G-----------V-DHKINFIQSD 128 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHH-HHHHHHHHHHc-------C-----------C-CCcEEEEEcc
Confidence 46899999 566666432222211466777777544 44444445543 1 1 3567888888
Q ss_pred cCCchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCceEEEeecCC
Q 020507 164 LRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIH 224 (325)
Q Consensus 164 L~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~s~i~~d~i~ 224 (325)
..+ +...|...+-+ ...=++...+ ..+.-..++..+.....+|..+++|.+.
T Consensus 129 a~~---~L~~l~~~~~~-~~fD~VfiDa-----~k~~y~~~~~~~~~ll~~GG~ii~dn~l 180 (234)
T PLN02781 129 ALS---ALDQLLNNDPK-PEFDFAFVDA-----DKPNYVHFHEQLLKLVKVGGIIAFDNTL 180 (234)
T ss_pred HHH---HHHHHHhCCCC-CCCCEEEECC-----CHHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 765 22334322111 1111332222 2345567788888888888889988764
No 102
>PF07283 TrbH: Conjugal transfer protein TrbH; InterPro: IPR010837 This entry represents TrbH, a bacterial conjugal transfer protein approximately 150 residues long. TrbH contains a putative membrane lipoprotein lipid attachment site [].
Probab=37.53 E-value=86 Score=25.81 Aligned_cols=45 Identities=24% Similarity=0.420 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhcCCCce-EEEeecCCCCCHHHHHHHHHHHhcCCCCC
Q 020507 200 SSRAIVGWASKTFSTAV-FFLYEQIHPDDAFGQQMIRNLESRGCALL 245 (325)
Q Consensus 200 ~~~~ll~~la~~f~~~s-~i~~d~i~p~d~fg~~m~~~l~~~g~~l~ 245 (325)
-+..+++.|++..|++. .+.+-+ ...|.||..+.+.|+..|-.+.
T Consensus 8 iA~D~v~qL~~~ypPA~Tt~~L~q-~~~d~Fg~aL~~~LR~~GYaV~ 53 (121)
T PF07283_consen 8 IAGDMVSQLAEQYPPAKTTFELKQ-KDPDPFGQALENALRAKGYAVI 53 (121)
T ss_pred HHHHHHHHHHHhcCCCccEEEEEc-CCCChHHHHHHHHHHhcCcEEE
Confidence 35678888899898864 344422 3457999999999999987765
No 103
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=37.23 E-value=3e+02 Score=24.38 Aligned_cols=102 Identities=11% Similarity=0.092 Sum_probs=58.1
Q ss_pred ceEEEcCCCCchhhhhhcccCCCCcEEEEecchhHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEecccCC
Q 020507 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRD 166 (325)
Q Consensus 87 ~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL~~ 166 (325)
..|+-||||-=.....+.....+...++-||.-++ .. ..+.+++-+|+.+
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~--------~~----------------------~~~v~~i~~D~~~ 102 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM--------DP----------------------IVGVDFLQGDFRD 102 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc--------cC----------------------CCCcEEEecCCCC
Confidence 47999999987654444332112357777777551 11 1347788999998
Q ss_pred chhHHHHHHhCCCCCCCCEEEEeecccccCChHH---------HHHHHHHHHhcCCCceEEEe
Q 020507 167 IQMLNEVINLANMDPSLPTFIIAECVLIYLDPDS---------SRAIVGWASKTFSTAVFFLY 220 (325)
Q Consensus 167 ~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~---------~~~ll~~la~~f~~~s~i~~ 220 (325)
.+.+.+.+.. +.....-++++.....+..... ...+|+.+.+...+|..++.
T Consensus 103 ~~~~~~i~~~--~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi 163 (209)
T PRK11188 103 ELVLKALLER--VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVV 163 (209)
T ss_pred hHHHHHHHHH--hCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 6333333322 2223345677766655543221 24567777777766554444
No 104
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=35.71 E-value=2e+02 Score=28.39 Aligned_cols=86 Identities=17% Similarity=0.223 Sum_probs=57.8
Q ss_pred CCCCEEEEeecccccCChHHHHHHHHHHHhcCC--CceEEEeecCCCCCHHHHHHHHHHHhcCCCCC--C----------
Q 020507 181 PSLPTFIIAECVLIYLDPDSSRAIVGWASKTFS--TAVFFLYEQIHPDDAFGQQMIRNLESRGCALL--G---------- 246 (325)
Q Consensus 181 ~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~--~~s~i~~d~i~p~d~fg~~m~~~l~~~g~~l~--g---------- 246 (325)
...-|+++-=|--..|+++...++++.+.+.++ ....+..| .+|.+ +...+.+.+++.|+.-. |
T Consensus 65 ~~i~~iy~GGGTps~l~~~~l~~ll~~i~~~~~~~~~~eit~E-~~P~~-lt~e~l~~l~~~GvnrislGvQS~~d~~L~ 142 (400)
T PRK07379 65 QPLQTVFFGGGTPSLLSVEQLERILTTLDQRFGIAPDAEISLE-IDPGT-FDLEQLQGYRSLGVNRVSLGVQAFQDELLA 142 (400)
T ss_pred CceeEEEECCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEE-eCCCc-CCHHHHHHHHHCCCCEEEEEcccCCHHHHH
Confidence 456789999999999999999999999998875 23566776 46653 33456667777776622 2
Q ss_pred -CcCCCCHH---HHHHHHHhCCCcch
Q 020507 247 -INATPTLL---AKEKLFLDQGWQQA 268 (325)
Q Consensus 247 -~~~y~t~~---~~~~r~~~~Gw~~~ 268 (325)
+....+.+ +..+.+++.||.++
T Consensus 143 ~l~R~~~~~~~~~ai~~l~~~G~~~v 168 (400)
T PRK07379 143 LCGRSHRVKDIFAAVDLIHQAGIENF 168 (400)
T ss_pred HhCCCCCHHHHHHHHHHHHHcCCCeE
Confidence 22223443 34556677888744
No 105
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=33.81 E-value=3.2e+02 Score=25.34 Aligned_cols=146 Identities=14% Similarity=0.095 Sum_probs=85.6
Q ss_pred cceEEEcCCCCchhhhhhcccCCCCcEEEEecchhHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEecccC
Q 020507 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL~ 165 (325)
...|+-+|||==-+.-.|...+ ..++..++.-+.+-..|.+..+.- +.+|.+
T Consensus 60 g~~vLDvGCGgG~Lse~mAr~G-a~VtgiD~se~~I~~Ak~ha~e~g---------------------------v~i~y~ 111 (243)
T COG2227 60 GLRVLDVGCGGGILSEPLARLG-ASVTGIDASEKPIEVAKLHALESG---------------------------VNIDYR 111 (243)
T ss_pred CCeEEEecCCccHhhHHHHHCC-CeeEEecCChHHHHHHHHhhhhcc---------------------------ccccch
Confidence 4789999999887777777664 577777777777766676655531 113343
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCceEEEeecCCCCC-H--HHHHHHHHHHhcCC
Q 020507 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDD-A--FGQQMIRNLESRGC 242 (325)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~s~i~~d~i~p~d-~--fg~~m~~~l~~~g~ 242 (325)
.. ..+ .|.+.| ..--+++.+|.+=-|=+|+. +++.|++...++..+++..++-+- + ++-.+.+.+-+
T Consensus 112 ~~-~~e-dl~~~~--~~FDvV~cmEVlEHv~dp~~---~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~--- 181 (243)
T COG2227 112 QA-TVE-DLASAG--GQFDVVTCMEVLEHVPDPES---FLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLR--- 181 (243)
T ss_pred hh-hHH-HHHhcC--CCccEEEEhhHHHccCCHHH---HHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHH---
Confidence 32 233 344433 22237888887766644443 999999999887777777777542 1 11222222222
Q ss_pred CCC-CCc---CCCCHHHHHHHHHhCCCcchh
Q 020507 243 ALL-GIN---ATPTLLAKEKLFLDQGWQQAV 269 (325)
Q Consensus 243 ~l~-g~~---~y~t~~~~~~r~~~~Gw~~~~ 269 (325)
-++ |.+ +|--+++....+...||....
T Consensus 182 ~vP~gTH~~~k~irp~El~~~~~~~~~~~~~ 212 (243)
T COG2227 182 IVPKGTHDYRKFIKPAELIRWLLGANLKIID 212 (243)
T ss_pred hcCCcchhHHHhcCHHHHHHhcccCCceEEe
Confidence 112 333 233445555555666776554
No 106
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=32.34 E-value=2.4e+02 Score=25.85 Aligned_cols=70 Identities=17% Similarity=0.216 Sum_probs=51.7
Q ss_pred CeEEEecccCCchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCceEEEeecCCCCCHHHHHHHH
Q 020507 156 NYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIR 235 (325)
Q Consensus 156 ~~~~v~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~s~i~~d~i~p~d~fg~~m~~ 235 (325)
.|.+|..||.+-..|. |+.+-.....|+|+...+. --++.-+++.|-+.++++. .+.|.|++.+.+.+
T Consensus 34 ~yE~veedl~~Ks~~l--l~~np~hkKVPvL~Hn~k~-----i~ESliiveYiDe~w~~~~-----~iLP~DPy~Ra~ar 101 (231)
T KOG0406|consen 34 PYEYVEEDLTNKSEWL--LEKNPVHKKVPVLEHNGKP-----ICESLIIVEYIDETWPSGP-----PILPSDPYERAQAR 101 (231)
T ss_pred ceEEEecCCCCCCHHH--HHhccccccCCEEEECCce-----ehhhHHHHHHHHhhccCCC-----CCCCCCHHHHHHHH
Confidence 4999999998633553 4444477889999999988 4467888999999988542 46788877766555
Q ss_pred HH
Q 020507 236 NL 237 (325)
Q Consensus 236 ~l 237 (325)
-+
T Consensus 102 fw 103 (231)
T KOG0406|consen 102 FW 103 (231)
T ss_pred HH
Confidence 54
No 107
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=31.78 E-value=4.5e+02 Score=24.86 Aligned_cols=154 Identities=12% Similarity=0.067 Sum_probs=84.6
Q ss_pred cceEEEcCCCCchhhhhhcccC-------CCCcEEEEecchhHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeE
Q 020507 86 KKQILSLGAGFDTTYFQLQAEG-------KAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYK 158 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~-------~~~~~~~EvD~p~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~ 158 (325)
.-+|+-+++|.=-.+||+...- ..++.+.++..+-.-.-|++..+. + ...+.++.
T Consensus 101 ~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~-~-----------------l~~~~~~~ 162 (296)
T KOG1540|consen 101 GMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKR-P-----------------LKASSRVE 162 (296)
T ss_pred CCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhc-C-----------------CCcCCceE
Confidence 3699999999999999986542 145666666666555555554442 1 11234577
Q ss_pred EEecccCCchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCC-ceEEEeecCCCCC----HHH-HH
Q 020507 159 LLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFST-AVFFLYEQIHPDD----AFG-QQ 232 (325)
Q Consensus 159 ~v~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~-~s~i~~d~i~p~d----~fg-~~ 232 (325)
.+..|-.+. -||.+.-..+.+-+-+=|.+ ..++.|+..=+.+.+ |-+.++|.-.-+. .|- +.
T Consensus 163 w~~~dAE~L----------pFdd~s~D~yTiafGIRN~t--h~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~y 230 (296)
T KOG1540|consen 163 WVEGDAEDL----------PFDDDSFDAYTIAFGIRNVT--HIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQY 230 (296)
T ss_pred EEeCCcccC----------CCCCCcceeEEEecceecCC--CHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhh
Confidence 777776654 25555555555555445544 233444444444433 4445555333221 111 12
Q ss_pred HHHHH----------HhcCCCCC-CCcCCCCHHHHHHHHHhCCCcchh
Q 020507 233 MIRNL----------ESRGCALL-GINATPTLLAKEKLFLDQGWQQAV 269 (325)
Q Consensus 233 m~~~l----------~~~g~~l~-g~~~y~t~~~~~~r~~~~Gw~~~~ 269 (325)
+.+++ .+.+.=|. +|..||+-+....-..+.||..+.
T Consensus 231 sf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 231 SFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred hhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 22222 22222233 677788877777777889998775
No 108
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=31.25 E-value=5.3e+02 Score=25.56 Aligned_cols=147 Identities=10% Similarity=0.027 Sum_probs=77.4
Q ss_pred cceEEEcCCCCchhhhhhcccC-CCCcEEEEecchhHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEeccc
Q 020507 86 KKQILSLGAGFDTTYFQLQAEG-KAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~-~~~~~~~EvD~p~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL 164 (325)
...+|-+|||.=.....+.... ..++.=+|++.+.+....+++-... -.|+.++.+|.
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~g---------------------L~NV~~i~~DA 181 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLN---------------------LKNLLIINYDA 181 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC---------------------CCcEEEEECCH
Confidence 3589999999877766665542 1244445555555555555443321 35788898887
Q ss_pred CCchhHHHHHHhCCCCCCCCEEEEeecccccCChH---------HHHHHHHHHHhcCCCceEEEeecCCCCCHHHHHHHH
Q 020507 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPD---------SSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIR 235 (325)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~---------~~~~ll~~la~~f~~~s~i~~d~i~p~d~fg~~m~~ 235 (325)
+.. .+.+ ..+.- ..|.++++.. ....+++.+++...+|..+.+-.- +..+...|..
T Consensus 182 ~~l---l~~~-----~~~s~-----D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD--~~~y~~~~~e 246 (390)
T PRK14121 182 RLL---LELL-----PSNSV-----EKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD--SELYFEFSLE 246 (390)
T ss_pred HHh---hhhC-----CCCce-----eEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE--CHHHHHHHHH
Confidence 642 1222 11111 2222333322 235778888887776654443111 1235566766
Q ss_pred HHHhcCCC-C--CCCcCCCCHHHHHHHHHhCCCcch
Q 020507 236 NLESRGCA-L--LGINATPTLLAKEKLFLDQGWQQA 268 (325)
Q Consensus 236 ~l~~~g~~-l--~g~~~y~t~~~~~~r~~~~Gw~~~ 268 (325)
.+.+.+.. . ..-....-...-++++.+.|...-
T Consensus 247 ~~~~~~~~~~~~~~~~~~~i~TkyE~r~~~~G~~Iy 282 (390)
T PRK14121 247 LFLKLPKAKIEIKKNAQLEVSSKYEDRWKKQNKDIY 282 (390)
T ss_pred HHHhCCCceeecccCCCCCCCCHHHHHHHHCCCCEE
Confidence 66554321 1 100111223466778888887643
No 109
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=30.10 E-value=1.1e+02 Score=28.70 Aligned_cols=57 Identities=19% Similarity=0.297 Sum_probs=45.5
Q ss_pred CCCeEEEecccCCchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCceEEEe
Q 020507 154 GDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLY 220 (325)
Q Consensus 154 ~~~~~~v~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~s~i~~ 220 (325)
.+++.+-..||.+. .| -..+|| ++.+==||+|++.+.-.+++..++....+|.++..
T Consensus 183 r~~V~F~~~NLl~~-~~----~~~~fD-----~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~Lfl 239 (268)
T COG1352 183 RKMVRFRRHNLLDD-SP----FLGKFD-----LIFCRNVLIYFDEETQERILRRFADSLKPGGLLFL 239 (268)
T ss_pred hcccEEeecCCCCC-cc----ccCCCC-----EEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 45667777788774 44 122577 89999999999999999999999999988887764
No 110
>PRK13883 conjugal transfer protein TrbH; Provisional
Probab=29.89 E-value=1.4e+02 Score=25.51 Aligned_cols=44 Identities=32% Similarity=0.474 Sum_probs=32.9
Q ss_pred HHHHHHHHHhcCCCce-EEEeecCCCCCHHHHHHHHHHHhcCCCCC
Q 020507 201 SRAIVGWASKTFSTAV-FFLYEQIHPDDAFGQQMIRNLESRGCALL 245 (325)
Q Consensus 201 ~~~ll~~la~~f~~~s-~i~~d~i~p~d~fg~~m~~~l~~~g~~l~ 245 (325)
+..+.+.|++..|++. .+.+.+- ..|.||..+...|+..|-.+.
T Consensus 37 A~D~v~qL~~~ypPA~Tt~~l~q~-~~D~Fg~aL~~aLR~~GYaV~ 81 (151)
T PRK13883 37 ATDAVQQLATLYPPAQTRFELQQP-TPDAFGQALVKALRDKGYALL 81 (151)
T ss_pred HHHHHHHHHHhCCCcceEEEEecC-CCcHHHHHHHHHHHHcCeEEE
Confidence 5667788888888764 4555542 347999999999999987765
No 111
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=29.32 E-value=3.6e+02 Score=22.96 Aligned_cols=100 Identities=14% Similarity=0.142 Sum_probs=52.0
Q ss_pred cceEEEcCCCCchhhhhhcccCCCCcEEEEecc-hhHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEeccc
Q 020507 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL 164 (325)
...|+-+|||.=.....+... .++..++=+|. |+.++.=++.+... + ..+.+++..|.
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~n~~~~-------~-------------~~~i~~~~~d~ 90 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQ-FPSLQVTAIERNPDALRLIKENRQRF-------G-------------CGNIDIIPGEA 90 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHh-------C-------------CCCeEEEecCc
Confidence 357999999987665555433 13344444444 33333322333321 0 13456666564
Q ss_pred CCchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCceEEEeecC
Q 020507 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQI 223 (325)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~s~i~~d~i 223 (325)
.. .+ . ..+| ++++-+...+ ...+++.+.+...+|..+++..+
T Consensus 91 ~~--~~----~-~~~D-----~v~~~~~~~~-----~~~~l~~~~~~Lk~gG~lv~~~~ 132 (187)
T PRK08287 91 PI--EL----P-GKAD-----AIFIGGSGGN-----LTAIIDWSLAHLHPGGRLVLTFI 132 (187)
T ss_pred hh--hc----C-cCCC-----EEEECCCccC-----HHHHHHHHHHhcCCCeEEEEEEe
Confidence 22 11 1 1232 4444444332 45678888887877777776654
No 112
>PRK05660 HemN family oxidoreductase; Provisional
Probab=28.72 E-value=2e+02 Score=28.07 Aligned_cols=86 Identities=9% Similarity=0.115 Sum_probs=57.1
Q ss_pred CCCCEEEEeecccccCChHHHHHHHHHHHhcCCC--ceEEEeecCCCCCHHHHHHHHHHHhcCCCCC--CCcCC------
Q 020507 181 PSLPTFIIAECVLIYLDPDSSRAIVGWASKTFST--AVFFLYEQIHPDDAFGQQMIRNLESRGCALL--GINAT------ 250 (325)
Q Consensus 181 ~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~--~s~i~~d~i~p~d~fg~~m~~~l~~~g~~l~--g~~~y------ 250 (325)
....|+++-=|--..|+++...++++.+.+.|+- +..+..|. +|.+ ......+.+++.|+.-. |+..+
T Consensus 57 ~~v~ti~~GGGtPs~l~~~~l~~ll~~l~~~~~~~~~~eit~e~-np~~-l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~ 134 (378)
T PRK05660 57 REVHSIFIGGGTPSLFSAEAIQRLLDGVRARLPFAPDAEITMEA-NPGT-VEADRFVGYQRAGVNRISIGVQSFSEEKLK 134 (378)
T ss_pred CceeEEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCcEEEEEe-CcCc-CCHHHHHHHHHcCCCEEEeccCcCCHHHHH
Confidence 4577999999999999999999999999998863 45677765 5543 23345566666665522 22221
Q ss_pred -----CCH---HHHHHHHHhCCCcch
Q 020507 251 -----PTL---LAKEKLFLDQGWQQA 268 (325)
Q Consensus 251 -----~t~---~~~~~r~~~~Gw~~~ 268 (325)
.+. .+..+++++.||..+
T Consensus 135 ~l~r~~~~~~~~~ai~~~~~~G~~~v 160 (378)
T PRK05660 135 RLGRIHGPDEAKRAAKLAQGLGLRSF 160 (378)
T ss_pred HhCCCCCHHHHHHHHHHHHHcCCCeE
Confidence 223 334566778899643
No 113
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=28.55 E-value=2.6e+02 Score=23.59 Aligned_cols=110 Identities=18% Similarity=0.165 Sum_probs=62.6
Q ss_pred HHHHHHhcCCCCCCcCCCcceEEEcCCCCchhhhhhcccCCCC--cEEEEecchhHHHHHHHHHhhchhhhhhhcccccc
Q 020507 68 LLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAP--HLYVELDFIEVTSKKAALIETHGELKDKVGVTASI 145 (325)
Q Consensus 68 ~i~~Fl~~~~~~~~~~~~~~QVV~LGAGlDTr~~RL~~~~~~~--~~~~EvD~p~vi~~K~~~l~~~~~l~~~lg~~~~~ 145 (325)
++.+++.... ...|+-||||.=....-+.... +. +..+|++...+...|+.+-...
T Consensus 22 lL~~~l~~~~--------~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~------------- 79 (170)
T PF05175_consen 22 LLLDNLPKHK--------GGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNG------------- 79 (170)
T ss_dssp HHHHHHHHHT--------TCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTT-------------
T ss_pred HHHHHHhhcc--------CCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcC-------------
Confidence 4445555543 4689999999988887776652 44 7888888666655555443321
Q ss_pred cccCCCccCCCeEEEecccCCchhHHHHHHhCCCCCCCCEEEEeecccccC---ChHHHHHHHHHHHhcCCCceEE
Q 020507 146 SQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYL---DPDSSRAIVGWASKTFSTAVFF 218 (325)
Q Consensus 146 ~~~~~~~~~~~~~~v~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL---~~~~~~~ll~~la~~f~~~s~i 218 (325)
-++.+++..|+.+. .. ...|| ++++=--+.-- ..+...++++...+...++..+
T Consensus 80 --------~~~v~~~~~d~~~~--~~----~~~fD-----~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l 136 (170)
T PF05175_consen 80 --------LENVEVVQSDLFEA--LP----DGKFD-----LIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRL 136 (170)
T ss_dssp --------CTTEEEEESSTTTT--CC----TTCEE-----EEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEE
T ss_pred --------cccccccccccccc--cc----cccee-----EEEEccchhcccccchhhHHHHHHHHHHhccCCCEE
Confidence 22378888888662 11 11233 22221101111 1134677888877777665433
No 114
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=28.19 E-value=3.1e+02 Score=21.79 Aligned_cols=52 Identities=13% Similarity=0.184 Sum_probs=34.1
Q ss_pred CCeEEEecccCCchhHHHHHHhCCCCC-C--CCEEEEe--ecccccCChH---HHHHHHHHHHh
Q 020507 155 DNYKLLPVDLRDIQMLNEVINLANMDP-S--LPTFIIA--ECVLIYLDPD---SSRAIVGWASK 210 (325)
Q Consensus 155 ~~~~~v~~DL~~~~~l~~~L~~~g~d~-~--~PTl~i~--Egvl~YL~~~---~~~~ll~~la~ 210 (325)
+.+.++-+|..+- ...|+.-|++. + .|++.|. ++ .=|.-++ .++.|.+++.+
T Consensus 50 gki~Fv~~D~~~~---~~~l~~fgl~~~~~~~P~~~i~~~~~-~KY~~~~~~~t~e~i~~F~~~ 109 (111)
T cd03073 50 RKLNFAVADKEDF---SHELEEFGLDFSGGEKPVVAIRTAKG-KKYVMEEEFSDVDALEEFLED 109 (111)
T ss_pred CeEEEEEEcHHHH---HHHHHHcCCCcccCCCCEEEEEeCCC-CccCCCcccCCHHHHHHHHHH
Confidence 4688899888763 23666778875 3 7999887 56 7784322 34566665544
No 115
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=28.10 E-value=2.1e+02 Score=28.14 Aligned_cols=79 Identities=24% Similarity=0.304 Sum_probs=55.7
Q ss_pred cceEEEcCCCCchhhhhhcccCCCCcEEEEecchhHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEecccC
Q 020507 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL~ 165 (325)
.+-||-+|||.--+.|--... .-.++|-|.-.++.+.-++++..+ ...++...|+.-+.
T Consensus 178 ~kiVlDVGaGSGILS~FAaqA--GA~~vYAvEAS~MAqyA~~Lv~~N-------------------~~~~rItVI~GKiE 236 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQA--GAKKVYAVEASEMAQYARKLVASN-------------------NLADRITVIPGKIE 236 (517)
T ss_pred CcEEEEecCCccHHHHHHHHh--CcceEEEEehhHHHHHHHHHHhcC-------------------CccceEEEccCccc
Confidence 478999999998884433332 356799999999999999988874 12678888988887
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEeecccccC
Q 020507 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYL 196 (325)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL 196 (325)
+. +|-+ +--++|+|-.=+-|
T Consensus 237 di-eLPE----------k~DviISEPMG~mL 256 (517)
T KOG1500|consen 237 DI-ELPE----------KVDVIISEPMGYML 256 (517)
T ss_pred cc-cCch----------hccEEEeccchhhh
Confidence 75 3332 33478888653333
No 116
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=26.77 E-value=1.5e+02 Score=26.46 Aligned_cols=120 Identities=23% Similarity=0.242 Sum_probs=76.3
Q ss_pred cceEEEcCCCCchhhhhhcccCCCCcEEEEecchhHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEecccC
Q 020507 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL~ 165 (325)
-+-|+-||||.=-+++=....+...+..+|+|-..+-..|+..-+- ..+..++.+|++
T Consensus 46 g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l----------------------~g~v~f~~~dv~ 103 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL----------------------LGDVEFVVADVS 103 (198)
T ss_pred CCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh----------------------CCceEEEEcchh
Confidence 3579999999988877655544467889999988877777655431 467889999998
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCC-ceEEEeecCCCCCHHHHHHHHHHHhcCCCC
Q 020507 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFST-AVFFLYEQIHPDDAFGQQMIRNLESRGCAL 244 (325)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~-~s~i~~d~i~p~d~fg~~m~~~l~~~g~~l 244 (325)
+... .+| |.+ | -|| |+. .-+++-+| +.+.|+ .+--.
T Consensus 104 ~~~~--------~~d----tvi------m-----------------NPPFG~~----~rhaDr~F---l~~Ale-~s~vV 140 (198)
T COG2263 104 DFRG--------KFD----TVI------M-----------------NPPFGSQ----RRHADRPF---LLKALE-ISDVV 140 (198)
T ss_pred hcCC--------ccc----eEE------E-----------------CCCCccc----cccCCHHH---HHHHHH-hhheE
Confidence 8521 233 221 1 133 332 11112123 233332 23335
Q ss_pred CCCcCCCCHHHHHHHHHhCCCcchhh
Q 020507 245 LGINATPTLLAKEKLFLDQGWQQAVA 270 (325)
Q Consensus 245 ~g~~~y~t~~~~~~r~~~~Gw~~~~~ 270 (325)
.+++...+.+-...++.++|+++...
T Consensus 141 YsiH~a~~~~f~~~~~~~~G~~v~~~ 166 (198)
T COG2263 141 YSIHKAGSRDFVEKFAADLGGTVTHI 166 (198)
T ss_pred EEeeccccHHHHHHHHHhcCCeEEEE
Confidence 58888888888999999999987664
No 117
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=26.52 E-value=3.8e+02 Score=23.85 Aligned_cols=119 Identities=16% Similarity=0.163 Sum_probs=55.9
Q ss_pred cceEEEcCCCCchhhhhhcccC-CCCcEEEEecchhHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEeccc
Q 020507 86 KKQILSLGAGFDTTYFQLQAEG-KAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~-~~~~~~~EvD~p~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL 164 (325)
...++-||||.=-..+...... ...+.=+|+.-. ....-...++...+....+|. ....+.++..|+
T Consensus 43 ~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~-~~~~a~~~~~~~~~~~~~~g~-----------~~~~v~l~~gdf 110 (205)
T PF08123_consen 43 DDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPE-LHDLAEELLEELKKRMKHYGK-----------RPGKVELIHGDF 110 (205)
T ss_dssp T-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHH-HHHHHHHHHHHHHHHHHHCTB--------------EEEEECS-T
T ss_pred CCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechH-HHHHHHHHHHHHHHHHHHhhc-----------ccccceeeccCc
Confidence 4689999999977755543331 123445666533 333333333332222223332 256788899999
Q ss_pred CCchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCceEEE-eecCCCC
Q 020507 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFL-YEQIHPD 226 (325)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~s~i~-~d~i~p~ 226 (325)
.+. ++.+.+- +..|++.+=... ++++...+|.+.+.+ .++|+.|+ ...+.|.
T Consensus 111 l~~-~~~~~~~------s~AdvVf~Nn~~--F~~~l~~~L~~~~~~-lk~G~~IIs~~~~~~~ 163 (205)
T PF08123_consen 111 LDP-DFVKDIW------SDADVVFVNNTC--FDPDLNLALAELLLE-LKPGARIISTKPFCPR 163 (205)
T ss_dssp TTH-HHHHHHG------HC-SEEEE--TT--T-HHHHHHHHHHHTT-S-TT-EEEESS-SS-T
T ss_pred ccc-HhHhhhh------cCCCEEEEeccc--cCHHHHHHHHHHHhc-CCCCCEEEECCCcCCC
Confidence 986 4444331 123565554443 467767777555554 67777655 4444443
No 118
>PF14965 BRI3BP: Negative regulator of p53/TP53
Probab=26.45 E-value=86 Score=27.49 Aligned_cols=34 Identities=18% Similarity=0.509 Sum_probs=29.2
Q ss_pred hHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHh
Q 020507 169 MLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASK 210 (325)
Q Consensus 169 ~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~ 210 (325)
-|.+.|+..|+|.+.+|= |++|+++..++.|..-
T Consensus 49 i~~dlL~~~Gid~~~lt~--------~~SP~~V~~~llw~~~ 82 (177)
T PF14965_consen 49 IWTDLLDVLGIDGSNLTH--------YFSPGGVQTVLLWGAV 82 (177)
T ss_pred HHHHHHHHhCcccccccc--------ccCHHHHHHHHHHHHH
Confidence 377888899999998875 9999999999988655
No 119
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=26.42 E-value=4e+02 Score=25.64 Aligned_cols=60 Identities=13% Similarity=0.113 Sum_probs=38.4
Q ss_pred CCCEEEEeecccccCChHHHHHHHHHHHhcCC--CceEEEeecCCCCCHHHHHHHHHHHhcCCC
Q 020507 182 SLPTFIIAECVLIYLDPDSSRAIVGWASKTFS--TAVFFLYEQIHPDDAFGQQMIRNLESRGCA 243 (325)
Q Consensus 182 ~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~--~~s~i~~d~i~p~d~fg~~m~~~l~~~g~~ 243 (325)
...|+++-=|--..|++++..++++.+.+.+. .+..+..|. +|.. +.....+.+++.|+.
T Consensus 51 ~v~~i~~GGGtPs~l~~~~l~~ll~~i~~~~~~~~~~eitie~-np~~-lt~e~l~~l~~~Gv~ 112 (360)
T TIGR00539 51 PLESIFIGGGTPNTLSVEAFERLFESIYQHASLSDDCEITTEA-NPEL-ITAEWCKGLKGAGIN 112 (360)
T ss_pred cccEEEeCCCchhcCCHHHHHHHHHHHHHhCCCCCCCEEEEEe-CCCC-CCHHHHHHHHHcCCC
Confidence 46788888888888888888888888887664 445566653 4532 222334445555544
No 120
>TIGR03184 DNA_S_dndE DNA sulfur modification protein DndE. This model describes the DndE protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=26.23 E-value=73 Score=25.52 Aligned_cols=42 Identities=19% Similarity=0.264 Sum_probs=36.3
Q ss_pred CCHHHHhHhhhccCCchhhHHHHHHHHHhhhcccCCCCCCCC
Q 020507 281 INPQERRRSTIVLLMQSMMPWGCLGILAFQKTKSASSTPLSV 322 (325)
Q Consensus 281 l~~~er~ri~~lE~fDE~Ee~~l~~~~~~~~~~~~~~~~~~~ 322 (325)
++.+-+.++.+|.-=.-++-|+.+|+.+|..+-+.+++|..+
T Consensus 3 lS~~a~~~L~~Lk~~Tgi~~~NilcR~A~~~SL~~~~~~~~~ 44 (105)
T TIGR03184 3 LSQTAKDQLRRLKRRTGLTPWNILCRWAFCLSLEEGSTPGVA 44 (105)
T ss_pred CcHHHHHHHHHHhcccCCCcchHHHHHHHHHHHhcCCCCCcc
Confidence 577788888888888888899999999999999999888654
No 121
>PRK03612 spermidine synthase; Provisional
Probab=25.89 E-value=6.6e+02 Score=25.71 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=24.1
Q ss_pred cceEEEcCCCCchhhhhhcccC-CCCcEEEEecchhHHHHHH
Q 020507 86 KKQILSLGAGFDTTYFQLQAEG-KAPHLYVELDFIEVTSKKA 126 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~-~~~~~~~EvD~p~vi~~K~ 126 (325)
.+.|+.+|+|-=.....+.... -..+..+|+|-.-+-..|+
T Consensus 298 ~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~ 339 (521)
T PRK03612 298 PRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELART 339 (521)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHh
Confidence 4678999988544443332221 1468888888754444443
No 122
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=25.06 E-value=79 Score=29.38 Aligned_cols=44 Identities=14% Similarity=0.316 Sum_probs=27.3
Q ss_pred cceEEEcCCCCchhhh-hhcccCCCCcEEEEecch-hHHHHHHHHHhh
Q 020507 86 KKQILSLGAGFDTTYF-QLQAEGKAPHLYVELDFI-EVTSKKAALIET 131 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~-RL~~~~~~~~~~~EvD~p-~vi~~K~~~l~~ 131 (325)
..-|+-||||+=+.++ ++... ++..|+=.|.. ..++.=.+.+..
T Consensus 106 p~sVlDigCGlNPlalp~~~~~--~~a~Y~a~DID~~~ve~l~~~l~~ 151 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEA--PGATYIAYDIDSQLVEFLNAFLAV 151 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSS--TT-EEEEEESBHHHHHHHHHHHHH
T ss_pred CchhhhhhccCCceehhhcccC--CCcEEEEEeCCHHHHHHHHHHHHh
Confidence 5789999999999954 44444 56788777664 445555555443
No 123
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=24.85 E-value=2.4e+02 Score=26.31 Aligned_cols=115 Identities=11% Similarity=0.167 Sum_probs=64.8
Q ss_pred CeEEEecccCCchhHHHHHHh-CCCCCCCCEEEEeecccccC----ChHHHHHHHHHHHhcCC---CceEE-EeecCCCC
Q 020507 156 NYKLLPVDLRDIQMLNEVINL-ANMDPSLPTFIIAECVLIYL----DPDSSRAIVGWASKTFS---TAVFF-LYEQIHPD 226 (325)
Q Consensus 156 ~~~~v~~DL~~~~~l~~~L~~-~g~d~~~PTl~i~Egvl~YL----~~~~~~~ll~~la~~f~---~~s~i-~~d~i~p~ 226 (325)
+....+.-+-...+..+.+.. ..+...-..+.+..=+|.+. .+++..++++.|.+.++ ++.-+ ..=.-++.
T Consensus 74 ~V~VQplhiipG~Ey~~l~~~v~~~~~~F~~i~~g~PLL~~~g~~~~~~D~~~va~aL~~~~~~~~~~~a~vlmGHGt~h 153 (262)
T PF06180_consen 74 EVVVQPLHIIPGEEYEKLRATVEAYKHDFKKIVLGRPLLYTMGQENSPEDYEAVAEALAEEFPKKRKDEAVVLMGHGTPH 153 (262)
T ss_dssp EEEEEE--SCSSHHHHHHHHHHHHHCCCSSEEEEE--SCSS-----SHHHHHHHHHHHHCCS-TT-TTEEEEEEE---SC
T ss_pred EEEEeecceeCcHhHHHHHHHHHHhhccCCeEEecccccccccccCChHHHHHHHHHHHHhccccCCCCEEEEEeCCCCC
Confidence 344445555544344332221 02344456788888665531 57888999999998887 44433 33333332
Q ss_pred CHH--HHHHHHHHHhcCCC-CC--CCcCCCCHHHHHHHHHhCCCcchhh
Q 020507 227 DAF--GQQMIRNLESRGCA-LL--GINATPTLLAKEKLFLDQGWQQAVA 270 (325)
Q Consensus 227 d~f--g~~m~~~l~~~g~~-l~--g~~~y~t~~~~~~r~~~~Gw~~~~~ 270 (325)
.+. -..+...|.+.|.+ +. +++.||++++..+++++.|.+.+..
T Consensus 154 ~an~~Y~~l~~~l~~~~~~~v~vgtvEG~P~~~~vi~~L~~~g~k~V~L 202 (262)
T PF06180_consen 154 PANAAYSALQAMLKKHGYPNVFVGTVEGYPSLEDVIARLKKKGIKKVHL 202 (262)
T ss_dssp HHHHHHHHHHHHHHCCT-TTEEEEETTSSSBHHHHHHHHHHHT-SEEEE
T ss_pred CccHHHHHHHHHHHhCCCCeEEEEEeCCCCCHHHHHHHHHhcCCCeEEE
Confidence 222 24466667777633 33 6778999999999999999987763
No 124
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=24.73 E-value=3.1e+02 Score=27.46 Aligned_cols=60 Identities=17% Similarity=0.256 Sum_probs=37.4
Q ss_pred CCCEEEEeecccccCChHHHHHHHHHHHhcCC--CceEEEeecCCCCCHHHHHHHHHHHhcCCC
Q 020507 182 SLPTFIIAECVLIYLDPDSSRAIVGWASKTFS--TAVFFLYEQIHPDDAFGQQMIRNLESRGCA 243 (325)
Q Consensus 182 ~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~--~~s~i~~d~i~p~d~fg~~m~~~l~~~g~~ 243 (325)
...++++-=|--..|+++...+|++.+.+.|+ .+..+..+ .+|.. +...+++.|++.|+.
T Consensus 103 ~v~~i~fgGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~tie-~~p~~-lt~e~l~~L~~~G~~ 164 (453)
T PRK13347 103 RVSQLHWGGGTPTILNPDQFERLMAALRDAFDFAPEAEIAVE-IDPRT-VTAEMLQALAALGFN 164 (453)
T ss_pred eEEEEEEcCcccccCCHHHHHHHHHHHHHhCCCCCCceEEEE-ecccc-CCHHHHHHHHHcCCC
Confidence 45677777777778888888888888887664 23344444 34432 234455556665654
No 125
>PRK10329 glutaredoxin-like protein; Provisional
Probab=24.12 E-value=1.7e+02 Score=21.79 Aligned_cols=45 Identities=13% Similarity=0.216 Sum_probs=32.2
Q ss_pred ecccCCchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHH
Q 020507 161 PVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVG 206 (325)
Q Consensus 161 ~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~ 206 (325)
..|+.+..++.+.+...|. ...|++++-+-.+.-+.++..++++-
T Consensus 30 ~idi~~~~~~~~~~~~~g~-~~vPvv~i~~~~~~Gf~~~~l~~~~~ 74 (81)
T PRK10329 30 MINVDRVPEAAETLRAQGF-RQLPVVIAGDLSWSGFRPDMINRLHP 74 (81)
T ss_pred EEECCCCHHHHHHHHHcCC-CCcCEEEECCEEEecCCHHHHHHHHH
Confidence 3344433356666666444 58999999998888999998888764
No 126
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=23.29 E-value=70 Score=28.52 Aligned_cols=65 Identities=17% Similarity=0.306 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhcCCCCCCCcC--CC----CH-------HHHHHHHHhCCCcchhh--------c-cHHHHHcCCCCHHH
Q 020507 228 AFGQQMIRNLESRGCALLGINA--TP----TL-------LAKEKLFLDQGWQQAVA--------W-DMLRVYSTFINPQE 285 (325)
Q Consensus 228 ~fg~~m~~~l~~~g~~l~g~~~--y~----t~-------~~~~~r~~~~Gw~~~~~--------~-d~~~~y~~~l~~~e 285 (325)
.+.+.+.++|++.|.|..|++. |. |+ +..++.+.+. |..... . -+..+|++ +|++.
T Consensus 16 ~~d~~~a~~l~~~G~~VvGvdsl~Yfw~~rtP~~~a~Dl~~~i~~y~~~-w~~~~vvLiGYSFGADvlP~~~nr-Lp~~~ 93 (192)
T PF06057_consen 16 DLDKQIAEALAKQGVPVVGVDSLRYFWSERTPEQTAADLARIIRHYRAR-WGRKRVVLIGYSFGADVLPFIYNR-LPAAL 93 (192)
T ss_pred hhhHHHHHHHHHCCCeEEEechHHHHhhhCCHHHHHHHHHHHHHHHHHH-hCCceEEEEeecCCchhHHHHHhh-CCHHH
Confidence 5778889999999999888763 21 33 3344445443 543331 2 34577888 99999
Q ss_pred HhHhhhccC
Q 020507 286 RRRSTIVLL 294 (325)
Q Consensus 286 r~ri~~lE~ 294 (325)
|++|..+=+
T Consensus 94 r~~v~~v~L 102 (192)
T PF06057_consen 94 RARVAQVVL 102 (192)
T ss_pred HhheeEEEE
Confidence 999987654
No 127
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=23.24 E-value=3.1e+02 Score=26.40 Aligned_cols=60 Identities=12% Similarity=0.140 Sum_probs=37.3
Q ss_pred CCCEEEEeecccccCChHHHHHHHHHHHhcCCCceEEEeecCCCCCHHHHHHHHHHHhcCCC
Q 020507 182 SLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRGCA 243 (325)
Q Consensus 182 ~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~s~i~~d~i~p~d~fg~~m~~~l~~~g~~ 243 (325)
...|+++-=|--..|+++...+|+..+.+.++.+..+..|. +|.. +.....+.+++.|+.
T Consensus 51 ~v~~iyfGGGTPs~l~~~~l~~ll~~i~~~~~~~~eitiE~-nP~~-~~~e~l~~l~~~Gvn 110 (350)
T PRK08446 51 KIESVFIGGGTPSTVSAKFYEPIFEIISPYLSKDCEITTEA-NPNS-ATKAWLKGMKNLGVN 110 (350)
T ss_pred ceeEEEECCCccccCCHHHHHHHHHHHHHhcCCCceEEEEe-CCCC-CCHHHHHHHHHcCCC
Confidence 45677777777778888888888888877655555555553 4532 223344555555544
No 128
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=23.04 E-value=5.1e+02 Score=23.36 Aligned_cols=55 Identities=16% Similarity=0.138 Sum_probs=40.4
Q ss_pred CCCeEEEecccCCchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHh
Q 020507 154 GDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASK 210 (325)
Q Consensus 154 ~~~~~~v~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~ 210 (325)
..+++++.-|=...++..+....+.+.+....++|.+ .-+|+.++.++||+.+-+
T Consensus 26 ~~~~~~f~~~~i~Vd~iReii~~~~~~~~~~k~iI~~--a~~l~~~A~NaLLK~LEE 80 (206)
T PRK08485 26 KKNLRFFIKEEFKIEDAKEVIAEAYIAESEEKIIVIA--APSYGIEAQNALLKILEE 80 (206)
T ss_pred CCceEEECCCCCCHHHHHHHHHHHhhCCCCcEEEEEc--hHhhCHHHHHHHHHHhcC
Confidence 5777777666334456666666666666666666665 489999999999999998
No 129
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=22.74 E-value=4.7e+02 Score=22.05 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=26.4
Q ss_pred ceEEEcCCCCchhhhhhcccCCCCcEEEEecc-hhHHHHHHHHH
Q 020507 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDF-IEVTSKKAALI 129 (325)
Q Consensus 87 ~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~-p~vi~~K~~~l 129 (325)
..|+-||||.=.....+...+ . +++-+|. |+.++.=++.+
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~--~-~v~~vD~s~~~~~~a~~~~ 61 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKG--K-CILTTDINPFAVKELRENA 61 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcC--C-EEEEEECCHHHHHHHHHHH
Confidence 569999999988888777662 2 5666665 44444333333
No 130
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=22.54 E-value=4.9e+02 Score=22.17 Aligned_cols=111 Identities=18% Similarity=0.243 Sum_probs=53.0
Q ss_pred cceEEEcCCCCchhhhhhcccCCCCcEEEEecchhHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEecccC
Q 020507 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL~ 165 (325)
.+.|+-||||.=-...-+... .....++=-|.++++..=+.-++.+.. ....+....+.|-.
T Consensus 46 ~~~VLELGaG~Gl~gi~~a~~-~~~~~Vv~TD~~~~l~~l~~Ni~~N~~-----------------~~~~~v~v~~L~Wg 107 (173)
T PF10294_consen 46 GKRVLELGAGTGLPGIAAAKL-FGAARVVLTDYNEVLELLRRNIELNGS-----------------LLDGRVSVRPLDWG 107 (173)
T ss_dssp TSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S-HHHHHHHHHHTT-------------------------EEEE--TT
T ss_pred CceEEEECCccchhHHHHHhc-cCCceEEEeccchhhHHHHHHHHhccc-----------------cccccccCcEEEec
Confidence 579999999865433333222 124566668888866654444444310 12456777777766
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCC-ce-EEEeec
Q 020507 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFST-AV-FFLYEQ 222 (325)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~-~s-~i~~d~ 222 (325)
+. .-.+.+....|| .++-++|+ + . ++....|++.+...+.+ +. ++.+..
T Consensus 108 ~~-~~~~~~~~~~~D----~IlasDv~-Y-~-~~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 108 DE-LDSDLLEPHSFD----VILASDVL-Y-D-EELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp S--HHHHHHS-SSBS----EEEEES---S---GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred Cc-ccccccccccCC----EEEEeccc-c-h-HHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 52 112223322344 44445554 3 2 68899999999997764 33 344443
No 131
>PRK14968 putative methyltransferase; Provisional
Probab=22.37 E-value=4.6e+02 Score=21.82 Aligned_cols=43 Identities=12% Similarity=0.147 Sum_probs=25.6
Q ss_pred cceEEEcCCCCchhhhhhcccCCCCcEEEEecchhHHHHHHHHHh
Q 020507 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIE 130 (325)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~l~ 130 (325)
...|+-+|||--.....+...+ .++.-+|++ |++++.=++.+.
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s-~~~~~~a~~~~~ 66 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKNG-KKVVGVDIN-PYAVECAKCNAK 66 (188)
T ss_pred CCEEEEEccccCHHHHHHHhhc-ceEEEEECC-HHHHHHHHHHHH
Confidence 3579999999888777776541 344444444 444444333343
No 132
>PRK07402 precorrin-6B methylase; Provisional
Probab=21.52 E-value=5.2e+02 Score=22.15 Aligned_cols=101 Identities=13% Similarity=0.087 Sum_probs=52.9
Q ss_pred ceEEEcCCCCchhhhhhcccCCCCcEEEEecc-hhHHHHHHHHHhhchhhhhhhcccccccccCCCccCCCeEEEecccC
Q 020507 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (325)
Q Consensus 87 ~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~v~~DL~ 165 (325)
..|+-+|||.=.....+... .++..++=+|. |+.++.=++.+++. + ..+.+++..|..
T Consensus 42 ~~VLDiG~G~G~~~~~la~~-~~~~~V~~vD~s~~~~~~a~~n~~~~-------~-------------~~~v~~~~~d~~ 100 (196)
T PRK07402 42 SVLWDIGAGTGTIPVEAGLL-CPKGRVIAIERDEEVVNLIRRNCDRF-------G-------------VKNVEVIEGSAP 100 (196)
T ss_pred CEEEEeCCCCCHHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHh-------C-------------CCCeEEEECchH
Confidence 57999999876664444321 12345555555 45554433334332 1 245777777764
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHHHhcCCCceEEEeecC
Q 020507 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQI 223 (325)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~s~i~~d~i 223 (325)
+ .+. . +.+ .|..+...+. .....+++.+.+...+|..+++...
T Consensus 101 ~--~~~-~-----~~~-~~d~v~~~~~------~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 101 E--CLA-Q-----LAP-APDRVCIEGG------RPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred H--HHh-h-----CCC-CCCEEEEECC------cCHHHHHHHHHHhcCCCeEEEEEee
Confidence 4 121 1 111 1223333331 2346788888877777666666544
No 133
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=21.29 E-value=2.3e+02 Score=20.10 Aligned_cols=49 Identities=8% Similarity=0.133 Sum_probs=28.6
Q ss_pred CCeEEEecccCCchhHHHHHHhCCCCCCCCEEEEeecccccCChHHHHHHHHHH
Q 020507 155 DNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWA 208 (325)
Q Consensus 155 ~~~~~v~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~l 208 (325)
.++.++.+|..+..+. .+..|+. ..||+++ +|...|......+.+.+.+
T Consensus 30 ~~~~~~~vd~~~~~~~---~~~~~v~-~vPt~~~-~g~~~~~G~~~~~~l~~~l 78 (82)
T TIGR00411 30 DAVEVEYINVMENPQK---AMEYGIM-AVPAIVI-NGDVEFIGAPTKEELVEAI 78 (82)
T ss_pred CceEEEEEeCccCHHH---HHHcCCc-cCCEEEE-CCEEEEecCCCHHHHHHHH
Confidence 3477788888653333 3344554 6899987 8875554433344444444
No 134
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=20.67 E-value=7.2e+02 Score=23.44 Aligned_cols=37 Identities=14% Similarity=0.045 Sum_probs=23.8
Q ss_pred ceEEEcCCCCchhhhhhcccCCCCcEEEEecc-hhHHHH
Q 020507 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDF-IEVTSK 124 (325)
Q Consensus 87 ~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~-p~vi~~ 124 (325)
..|+-+|||.=..+..+... .++..++=+|. |+.++.
T Consensus 135 ~~VLDlG~GsG~iai~la~~-~p~~~V~avDis~~al~~ 172 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYA-FPDAEVDAVDISPDALAV 172 (307)
T ss_pred CEEEEEechhhHHHHHHHHH-CCCCEEEEEeCCHHHHHH
Confidence 57999999998887776554 24455555555 344443
No 135
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=20.10 E-value=3.2e+02 Score=27.34 Aligned_cols=60 Identities=17% Similarity=0.285 Sum_probs=34.3
Q ss_pred CCCEEEEeecccccCChHHHHHHHHHHHhcCC--CceEEEeecCCCCCHHHHHHHHHHHhcCCC
Q 020507 182 SLPTFIIAECVLIYLDPDSSRAIVGWASKTFS--TAVFFLYEQIHPDDAFGQQMIRNLESRGCA 243 (325)
Q Consensus 182 ~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~--~~s~i~~d~i~p~d~fg~~m~~~l~~~g~~ 243 (325)
...++++.-|--.+|+++...+|++.+.+.|+ .+..+..+ .+|.. +...+.+.+++.|+.
T Consensus 102 ~v~~I~fgGGtP~~l~~~~l~~ll~~i~~~~~~~~~~eitie-~np~~-l~~e~l~~lk~~G~~ 163 (455)
T TIGR00538 102 HVSQLHWGGGTPTYLSPEQISRLMKLIRENFPFNADAEISIE-IDPRY-ITKDVIDALRDEGFN 163 (455)
T ss_pred ceEEEEECCCCcCCCCHHHHHHHHHHHHHhCCCCCCCeEEEE-eccCc-CCHHHHHHHHHcCCC
Confidence 45577777777777788888888887777654 22334444 23321 223344444444444
Done!