BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020508
(325 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3O1L|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Pspto_4314) From Pseudomonas Syringae Pv. Tomato Str.
Dc3000 At 2.20 A Resolution
pdb|3O1L|B Chain B, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Pspto_4314) From Pseudomonas Syringae Pv. Tomato Str.
Dc3000 At 2.20 A Resolution
Length = 302
Score = 198 bits (504), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 120/285 (42%), Positives = 157/285 (55%), Gaps = 14/285 (4%)
Query: 46 VFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDED 105
V CPD VGIVAK+S +AS G I A F+ R E D + + + E
Sbjct: 26 VIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFXRHEIRADTLPFDLDGFREA 85
Query: 106 FFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH 165
F +++ F+ R+ D K +V + AS++ HCL D L+ W +L +I CVISNH
Sbjct: 86 FTPIAEEFSXD---WRITDSAQKKRVVLXASRESHCLADLLHRWHSDELDCDIACVISNH 142
Query: 166 DRGPNSHVIRFLERHGIPYHYLCAKXXXXXXXXXXXVQ-----NTDFLVLARYMQILSGK 220
+ +E H IPY+++ + D +VLARY QIL +
Sbjct: 143 -----QDLRSXVEWHDIPYYHVPVDPKDKEPAFAEVSRLVGHHQADVVVLARYXQILPPQ 197
Query: 221 FLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVER 280
R Y VINIHH LPSF G KP QA GVKLIGAT H+VTEELDAGPIIEQ V R
Sbjct: 198 LCREYAHQVINIHHSFLPSFVGAKPYHQASLRGVKLIGATCHYVTEELDAGPIIEQDVVR 257
Query: 281 VSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF 325
VSHRD++ V+ DVEK LA+ ++++ E RVL ++ NKTVVF
Sbjct: 258 VSHRDSIENXVRFGRDVEKXVLARGLRAHLEDRVLVHD-NKTVVF 301
>pdb|3OBI|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Np_949368) From Rhodopseudomonas Palustris Cga009 At
1.95 A Resolution
pdb|3OBI|B Chain B, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Np_949368) From Rhodopseudomonas Palustris Cga009 At
1.95 A Resolution
pdb|3OBI|C Chain C, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Np_949368) From Rhodopseudomonas Palustris Cga009 At
1.95 A Resolution
pdb|3OBI|D Chain D, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Np_949368) From Rhodopseudomonas Palustris Cga009 At
1.95 A Resolution
Length = 288
Score = 172 bits (436), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 108/282 (38%), Positives = 144/282 (51%), Gaps = 13/282 (4%)
Query: 49 CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108
CPD GIV+ +S + G NIL A + + F+ R F P + F
Sbjct: 13 CPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFXRVVFNAAAKVIPLASLRTGFGV 72
Query: 109 LSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRG 168
++ F D + + KV +L S+ +HCL D LY W+ G L T ++SNH R
Sbjct: 73 IAAKFTXG---WHXRDRETRRKVXLLVSQSDHCLADILYRWRVGDLHXIPTAIVSNHPRE 129
Query: 169 PNSHVIRFLERHGIP-YHYLCAKXXXXXXXXXXXV----QNTDFLVLARYMQILSGKFLR 223
S + IP YH+ K +TD +VLARY QILS +
Sbjct: 130 TFSG----FDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTDLVVLARYXQILSDEXSA 185
Query: 224 SYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSH 283
INIHH LP FKG KP QAFD GVKLIGAT+H+VT LD GPII+Q VER+SH
Sbjct: 186 RLAGRCINIHHSFLPGFKGAKPYHQAFDRGVKLIGATAHYVTSALDEGPIIDQDVERISH 245
Query: 284 RDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF 325
RD V+K D+E++ L++A+ + + RV+ KTVVF
Sbjct: 246 RDTPADLVRKGRDIERRVLSRALHYHLDDRVI-LNGRKTVVF 286
>pdb|3NRB|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A
Resolution
pdb|3NRB|B Chain B, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A
Resolution
pdb|3NRB|C Chain C, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A
Resolution
pdb|3NRB|D Chain D, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A
Resolution
Length = 287
Score = 162 bits (411), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 110/282 (39%), Positives = 149/282 (52%), Gaps = 15/282 (5%)
Query: 49 CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108
C D GIV+++S + + G NI+ A+ F E + F+ R P+ + + F K
Sbjct: 14 CQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFXRVSVEI-PVAGVND-FNSAFGK 71
Query: 109 LSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRG 168
+ + +NA P D K KV + SK +HCL D LY + G+L E+ +ISNH R
Sbjct: 72 VVEKYNAEWWFR--PRTDRK-KVVIXVSKFDHCLGDLLYRHRLGELDXEVVGIISNHPRE 128
Query: 169 PNSHVIRFLERHGIPYHYL----CAKXXXXXXXXXXXVQN-TDFLVLARYMQILSGKFLR 223
S + IP+HYL K Q+ D +VLARY QILS
Sbjct: 129 ALSVSLV----GDIPFHYLPVTPATKAAQESQIKNIVTQSQADLIVLARYXQILSDDLSA 184
Query: 224 SYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSH 283
INIHH LP FKG KP QA GVKLIGAT+HFVT +LD GPII Q VE VSH
Sbjct: 185 FLSGRCINIHHSFLPGFKGAKPYHQAHTRGVKLIGATAHFVTADLDEGPIIAQDVEHVSH 244
Query: 284 RDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF 325
RD+ V+K D+E++ L++A+ + E R++ +TVVF
Sbjct: 245 RDSAEDLVRKGRDIERRVLSRAVLLFLEDRLI-VNGERTVVF 285
>pdb|3LOU|A Chain A, Crystal Structure Of Formyltetrahydrofolate Deformylase
(yp_105254.1) From Burkholderia Mallei Atcc 23344 At
1.90 A Resolution
pdb|3LOU|B Chain B, Crystal Structure Of Formyltetrahydrofolate Deformylase
(yp_105254.1) From Burkholderia Mallei Atcc 23344 At
1.90 A Resolution
pdb|3LOU|C Chain C, Crystal Structure Of Formyltetrahydrofolate Deformylase
(yp_105254.1) From Burkholderia Mallei Atcc 23344 At
1.90 A Resolution
pdb|3LOU|D Chain D, Crystal Structure Of Formyltetrahydrofolate Deformylase
(yp_105254.1) From Burkholderia Mallei Atcc 23344 At
1.90 A Resolution
Length = 292
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 100/285 (35%), Positives = 142/285 (49%), Gaps = 18/285 (6%)
Query: 49 CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEF--IFDPIKWPREQMDEDF 106
CP G VA + + + VF + F+ R F D + + +F
Sbjct: 17 CPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREF 76
Query: 107 FKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH- 165
+++ F R + D+ + KV + SK EHCL D L+ W+ G+L +I ++SNH
Sbjct: 77 EPIAERF---RXQWAIHDVAARPKVLIXVSKLEHCLADLLFRWKXGELKXDIVGIVSNHP 133
Query: 166 DRGPNSHVIRFLERHGIPYHY--LCAKXXXXXXXXXXXVQNT---DFLVLARYMQILSGK 220
D P +HG+P+ + + A V T + ++LARY Q+LS +
Sbjct: 134 DFAP------LAAQHGLPFRHFPITADTKAQQEAQWLDVFETSGAELVILARYXQVLSPE 187
Query: 221 FLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVER 280
INIHH LP FKG KP QA GVKLIGAT+HFVT++LD GPIIEQ+VER
Sbjct: 188 ASARLANRAINIHHSFLPGFKGAKPYHQAHARGVKLIGATAHFVTDDLDEGPIIEQVVER 247
Query: 281 VSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF 325
V H + DVE LA+A+K++ E RV ++TVVF
Sbjct: 248 VDHSYRPEQLLAVGRDVECITLARAVKAFIERRVF-LNGDRTVVF 291
>pdb|3N0V|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Pp_0327) From Pseudomonas Putida Kt2440 At 2.25 A
Resolution
pdb|3N0V|B Chain B, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Pp_0327) From Pseudomonas Putida Kt2440 At 2.25 A
Resolution
pdb|3N0V|C Chain C, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Pp_0327) From Pseudomonas Putida Kt2440 At 2.25 A
Resolution
pdb|3N0V|D Chain D, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Pp_0327) From Pseudomonas Putida Kt2440 At 2.25 A
Resolution
Length = 286
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/285 (32%), Positives = 138/285 (48%), Gaps = 21/285 (7%)
Query: 49 CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108
CP +G V ++ + + + F + F+ R EF + P + DE F+
Sbjct: 15 CPSXLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEF-----RQP-DDFDEAGFR 68
Query: 109 --LSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH- 165
L++ A + + + KV + SK +HCL D LY + G+L ++ V+SNH
Sbjct: 69 AGLAERSEAFGXAFELTAPNHRPKVVIXVSKADHCLNDLLYRQRIGQLGXDVVAVVSNHP 128
Query: 166 DRGPNSHVIRFLERHGIPYHYLCAKXXXXXXXXXXXVQ-----NTDFLVLARYMQILSGK 220
D P +H H IPY++ +Q + ++LARY Q+LS +
Sbjct: 129 DLEPLAHW------HKIPYYHFALDPKDKPGQERKVLQVIEETGAELVILARYXQVLSPE 182
Query: 221 FLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVER 280
R INIHH LLP FKG KP QA++ GVK +GAT+H++ +LD GPII Q VE
Sbjct: 183 LCRRLDGWAINIHHSLLPGFKGAKPYHQAYNKGVKXVGATAHYINNDLDEGPIIAQGVEV 242
Query: 281 VSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF 325
V H + K D+E LA+A+ + E RV N+TVV
Sbjct: 243 VDHSHYPEDLIAKGRDIECLTLARAVGYHIERRVF-LNANRTVVL 286
>pdb|3KCQ|A Chain A, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Anaplasma Phagocytophilum
pdb|3KCQ|B Chain B, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Anaplasma Phagocytophilum
pdb|3KCQ|C Chain C, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Anaplasma Phagocytophilum
pdb|3KCQ|D Chain D, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Anaplasma Phagocytophilum
Length = 215
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 87/181 (48%), Gaps = 4/181 (2%)
Query: 128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYL 187
+ +V VL S + L + + V I+CVISN+ + + + +GIP +
Sbjct: 8 ELRVGVLISGRGSNLEALAKAFSTEESSVVISCVISNN---AEARGLLIAQSYGIPTFVV 64
Query: 188 CAKXXXXXXXXXXXVQ-NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPA 246
K + + D + LA +M IL KF+ + +INIH LLPSFKG
Sbjct: 65 KRKPLDIEHISTVLREHDVDLVCLAGFMSILPEKFVTDWHHKIINIHPSLLPSFKGLNAQ 124
Query: 247 KQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAI 306
+QA+ AGVK+ G T H+V +ELDAGPII Q V D + + E C K +
Sbjct: 125 EQAYKAGVKIAGCTLHYVYQELDAGPIIMQAAVPVLREDTAESLASRILAAEHVCYPKGV 184
Query: 307 K 307
K
Sbjct: 185 K 185
>pdb|3P9X|A Chain A, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Bacillus Halodurans
pdb|3P9X|B Chain B, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Bacillus Halodurans
Length = 211
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 84/175 (48%), Gaps = 9/175 (5%)
Query: 130 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 189
+VA+ AS + + G+LP E+ +I++ P + V+ ++ H IP L
Sbjct: 4 RVAIFASGSGTNAEAIIQSQKAGQLPCEVALLITDK---PGAKVVERVKVHEIPVCALDP 60
Query: 190 KXXXXXXXXXXXV------QNTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGG 243
K V + DF+VLA YM+++ L +Y ++NIH LLP+F G
Sbjct: 61 KTYPSKEAYEIEVVQQLKEKQIDFVVLAGYMRLVGPTLLGAYEGRIVNIHPSLLPAFPGL 120
Query: 244 KPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVE 298
+QA A VK+ G T H+V E +D GPII Q + D L T K + VE
Sbjct: 121 HAIEQAIRANVKVTGVTIHYVDEGMDTGPIIAQEAVSIEEEDTLETLTTKIQAVE 175
>pdb|3AUF|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase 1 From Symbiobacterium Toebii
Length = 229
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 90/192 (46%), Gaps = 9/192 (4%)
Query: 130 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGI------P 183
++ VL S L L G +EG++P + VIS+ +++ + R G+ P
Sbjct: 24 RIGVLISGSGTNLQAILDGCREGRIPGRVAVVISDR---ADAYGLERARRAGVDALHMDP 80
Query: 184 YHYLCAKXXXXXXXXXXXVQNTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGG 243
Y D + LA YM+++ G L ++ ++NIH LLP+F G
Sbjct: 81 AAYPSRTAFDAALAERLQAYGVDLVCLAGYMRLVRGPMLTAFPNRILNIHPSLLPAFPGL 140
Query: 244 KPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLA 303
+ +QA + GVK+ G T HFVT +D GPII Q V D + ++ E +
Sbjct: 141 EAQRQALEHGVKVAGCTVHFVTAGVDEGPIILQAAVPVLEGDTVEDLRRRILAEEHRIYP 200
Query: 304 KAIKSYCELRVL 315
+AI+ + E R++
Sbjct: 201 EAIRLFAEGRLV 212
>pdb|2YWR|A Chain A, Crystal Structure Of Gar Transformylase From Aquifex
Aeolicus
Length = 216
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 93/192 (48%), Gaps = 9/192 (4%)
Query: 130 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYL-- 187
K+ VL S + L + + GK+ I VIS++ P ++ I ++H + +
Sbjct: 3 KIGVLVSGRGSNLQAIIDAIESGKVNASIELVISDN---PKAYAIERCKKHNVECKVIQR 59
Query: 188 ----CAKXXXXXXXXXXXVQNTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGG 243
K + + +VLA + +ILS FL+ + VINIH L+P+F+G
Sbjct: 60 KEFPSKKEFEERXALELKKKGVELVVLAGFXRILSHNFLKYFPNKVINIHPSLIPAFQGL 119
Query: 244 KPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLA 303
KQA + GVK G T H V E +DAGP+I Q V V D+ T + E + L
Sbjct: 120 HAQKQAVEFGVKFSGCTVHIVDESVDAGPVIVQAVVPVLPEDDENTLADRILKWEHKILP 179
Query: 304 KAIKSYCELRVL 315
+ ++ + + R++
Sbjct: 180 QTVQWFAQDRII 191
>pdb|1ZLY|A Chain A, The Structure Of Human Glycinamide Ribonucleotide
Transformylase In Complex With Alpha,beta-n-
(hydroxyacetyl)-d-ribofuranosylamine And 10-formyl-5,8,
Dideazafolate
Length = 203
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 86/184 (46%), Gaps = 9/184 (4%)
Query: 130 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 189
+VAVL S L + +E +I VISN + ER GIP +
Sbjct: 2 RVAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAG---LDKAERAGIPTRVINH 58
Query: 190 KXXXXXXXXXXXVQ------NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGG 243
K + + D + LA +M+ILSG F++ + ++NIH LLPSFKG
Sbjct: 59 KLYKNRVEFDSAIDLVLEEFSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGS 118
Query: 244 KPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLA 303
+QA + GV + G T HFV E++DAG II Q V D + T ++ + E +
Sbjct: 119 NAHEQALETGVTVTGCTVHFVAEDVDAGQIILQEAVPVKRGDTVATLSERVKLAEHKIFP 178
Query: 304 KAIK 307
A++
Sbjct: 179 AALQ 182
>pdb|1MEO|A Chain A, Human Glycinamide Ribonucleotide Transformylase At Ph 4.2
pdb|1NJS|A Chain A, Human Gar Tfase In Complex With Hydrolyzed Form Of 10-
Trifluoroacetyl-5,10-Dideaza-Acyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1NJS|B Chain B, Human Gar Tfase In Complex With Hydrolyzed Form Of 10-
Trifluoroacetyl-5,10-Dideaza-Acyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RBM|A Chain A, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RBM|B Chain B, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RBQ|A Chain A, Human Gar Tfase Complex Structure With
10-(Trifluoroacetyl)-
5,10-Dideazaacyclic-5,6,7,8-Tetrahydrofolic Acid
pdb|1RBQ|B Chain B, Human Gar Tfase Complex Structure With
10-(Trifluoroacetyl)-
5,10-Dideazaacyclic-5,6,7,8-Tetrahydrofolic Acid
pdb|1RBQ|C Chain C, Human Gar Tfase Complex Structure With
10-(Trifluoroacetyl)-
5,10-Dideazaacyclic-5,6,7,8-Tetrahydrofolic Acid
pdb|1RBQ|D Chain D, Human Gar Tfase Complex Structure With
10-(Trifluoroacetyl)-
5,10-Dideazaacyclic-5,6,7,8-Tetrahydrofolic Acid
pdb|1RBY|A Chain A, Human Gar Tfase Complex Structure With
10-(trifluoroacetyl)-
5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic Acid And
Substrate Beta-gar
pdb|1RBY|B Chain B, Human Gar Tfase Complex Structure With
10-(trifluoroacetyl)-
5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic Acid And
Substrate Beta-gar
pdb|1RBY|C Chain C, Human Gar Tfase Complex Structure With
10-(trifluoroacetyl)-
5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic Acid And
Substrate Beta-gar
pdb|1RBY|D Chain D, Human Gar Tfase Complex Structure With
10-(trifluoroacetyl)-
5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic Acid And
Substrate Beta-gar
pdb|1RBZ|A Chain A, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RBZ|B Chain B, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RC0|A Chain A, Human Gar Tfase Complex Structure With Polyglutamated 10-
(trifluoroacetyl)-5,10-dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RC0|B Chain B, Human Gar Tfase Complex Structure With Polyglutamated 10-
(trifluoroacetyl)-5,10-dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RC1|A Chain A, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RC1|B Chain B, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
Length = 209
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 86/184 (46%), Gaps = 9/184 (4%)
Query: 130 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 189
+VAVL S L + +E +I VISN + ER GIP +
Sbjct: 2 RVAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAG---LDKAERAGIPTRVINH 58
Query: 190 KXXXXXXXXXXXVQ------NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGG 243
K + + D + LA +M+ILSG F++ + ++NIH LLPSFKG
Sbjct: 59 KLYKNRVEFDSAIDLVLEEFSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGS 118
Query: 244 KPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLA 303
+QA + GV + G T HFV E++DAG II Q V D + T ++ + E +
Sbjct: 119 NAHEQALETGVTVTGCTVHFVAEDVDAGQIILQEAVPVKRGDTVATLSERVKLAEHKIFP 178
Query: 304 KAIK 307
A++
Sbjct: 179 AALQ 182
>pdb|1MEJ|B Chain B, Human Glycinamide Ribonucleotide Transformylase Domain At
Ph 8.5
pdb|1MEJ|A Chain A, Human Glycinamide Ribonucleotide Transformylase Domain At
Ph 8.5
pdb|1MEJ|C Chain C, Human Glycinamide Ribonucleotide Transformylase Domain At
Ph 8.5
pdb|1MEN|A Chain A, Complex Structure Of Human Gar Tfase And Substrate
Beta-Gar
pdb|1MEN|B Chain B, Complex Structure Of Human Gar Tfase And Substrate
Beta-Gar
pdb|1MEN|C Chain C, Complex Structure Of Human Gar Tfase And Substrate
Beta-Gar
Length = 223
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 85/183 (46%), Gaps = 9/183 (4%)
Query: 131 VAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK 190
VAVL S L + +E +I VISN + ER GIP + K
Sbjct: 14 VAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAG---LDKAERAGIPTRVINHK 70
Query: 191 XXXXXXXXXXXVQ------NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGK 244
+ + D + LA +M+ILSG F++ + ++NIH LLPSFKG
Sbjct: 71 LYKNRVEFDSAIDLVLEEFSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGSN 130
Query: 245 PAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAK 304
+QA + GV + G T HFV E++DAG II Q V D + T ++ + E +
Sbjct: 131 AHEQALETGVTVTGCTVHFVAEDVDAGQIILQEAVPVKRGDTVATLSERVKLAEHKIFPA 190
Query: 305 AIK 307
A++
Sbjct: 191 ALQ 193
>pdb|1ZLX|A Chain A, The Apo Structure Of Human Glycinamide Ribonucleotide
Transformylase
Length = 203
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 84/184 (45%), Gaps = 9/184 (4%)
Query: 130 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 189
+VAVL S L + +E +I VISN + ER GIP +
Sbjct: 2 RVAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAG---LDKAERAGIPTRVINH 58
Query: 190 KXXXXXXXXXXXVQ------NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGG 243
K + + D + LA + +ILSG F++ + +NIH LLPSFKG
Sbjct: 59 KLYKNRVEFDSAIDLVLEEFSIDIVCLAGFXRILSGPFVQKWNGKXLNIHPSLLPSFKGS 118
Query: 244 KPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLA 303
+QA + GV + G T HFV E++DAG II Q V D + T ++ + E +
Sbjct: 119 NAHEQALETGVTVTGCTVHFVAEDVDAGQIILQEAVPVKRGDTVATLSERVKLAEHKIFP 178
Query: 304 KAIK 307
A++
Sbjct: 179 AALQ 182
>pdb|4DS3|A Chain A, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Brucella Melitensis
Length = 209
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 58/109 (53%)
Query: 202 VQNTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATS 261
V D + LA YM++LSG+F+ Y ++NIH LLP F G ++A DAG+KL G T
Sbjct: 84 VLKPDIICLAGYMRLLSGRFIAPYEGRILNIHPSLLPLFPGLHTHQRALDAGMKLAGCTV 143
Query: 262 HFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYC 310
H VTE +D GPI+ Q V D T + E + A++ +
Sbjct: 144 HLVTEGMDEGPILAQAAVPVLDGDTAETLAARVLKAEHRLYPLALQKFA 192
>pdb|3AV3|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase 1 From Geobacillus Kaustophilus
Length = 212
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 67/155 (43%), Gaps = 9/155 (5%)
Query: 130 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 189
++AV AS + + G LP + ++ + P + VI R +P
Sbjct: 5 RLAVFASGSGTNFQAIVDAAKRGDLPARVALLVCDR---PGAKVIERAARENVPAFVFSP 61
Query: 190 KXXXXXXXXXXXV------QNTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGG 243
K + + D++ LA Y +++ L +Y ++NIH LLP+F G
Sbjct: 62 KDYPSKAAFESEILRELKGRQIDWIALAGYXRLIGPTLLSAYEGKIVNIHPSLLPAFPGK 121
Query: 244 KPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMV 278
QA+ AGV G T H+V E D GP+I Q V
Sbjct: 122 DAIGQAYRAGVSETGVTVHYVDEGXDTGPVIAQRV 156
>pdb|3TQR|A Chain A, Structure Of The Phosphoribosylglycinamide
Formyltransferase (Purn) In Complex With Ches From
Coxiella Burnetii
Length = 215
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 88/197 (44%), Gaps = 11/197 (5%)
Query: 131 VAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK 190
+ VL S L + Q+G L +EI VISN +++ ++ ++ IP H + +
Sbjct: 8 IVVLISGNGTNLQAIIGAIQKG-LAIEIRAVISNR---ADAYGLKRAQQADIPTHIIPHE 63
Query: 191 XXXXXXXXXXXVQNT------DFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGK 244
+Q T +VLA + + L F+ Y INIH LLP + G
Sbjct: 64 EFPSRTDFESTLQKTIDHYDPKLIVLAGFXRKLGKAFVSHYSGRXINIHPSLLPKYTGLN 123
Query: 245 PAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAK 304
++A AG G + H+VTE+LDAGP+I Q ++ +D T + +E +
Sbjct: 124 THERALAAGETEHGVSVHYVTEDLDAGPLICQARLSITPQDTPETLKTRVHALEHIIYPE 183
Query: 305 AIKSYCELRVLPYEMNK 321
+ + R L Y N+
Sbjct: 184 VLSWFAAGR-LNYHNNQ 199
>pdb|1C3E|A Chain A, New Insights Into Inhibitor Design From The Crystal
Structure And Nmr Studies Of E. Coli Gar Transformylate
In Complex With Beta-Gar And
10-Formyl-5,8,10-Trideazafolic Acid.
pdb|1C3E|B Chain B, New Insights Into Inhibitor Design From The Crystal
Structure And Nmr Studies Of E. Coli Gar Transformylate
In Complex With Beta-Gar And
10-Formyl-5,8,10-Trideazafolic Acid
Length = 209
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 45/71 (63%)
Query: 206 DFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVT 265
D +VLA +M+ILS F+ Y ++NIH LLP + G +QA + G + G + HFVT
Sbjct: 81 DVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVT 140
Query: 266 EELDAGPIIEQ 276
+ELD GP+I Q
Sbjct: 141 DELDGGPVILQ 151
>pdb|1GRC|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase From Escherichia Coli At 3.0 Angstroms
Resolution: A Target Enzyme For Chemotherapy
pdb|1GRC|B Chain B, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase From Escherichia Coli At 3.0 Angstroms
Resolution: A Target Enzyme For Chemotherapy
pdb|1GAR|A Chain A, Towards Structure-Based Drug Design: Crystal Structure Of
A Multisubstrate Adduct Complex Of Glycinamide
Ribonucleotide Transformylase At 1.96 Angstroms
Resolution
pdb|1GAR|B Chain B, Towards Structure-Based Drug Design: Crystal Structure Of
A Multisubstrate Adduct Complex Of Glycinamide
Ribonucleotide Transformylase At 1.96 Angstroms
Resolution
pdb|1C2T|A Chain A, New Insights Into Inhibitor Design From The Crystal
Structure And Nmr Studies Of E. Coli Gar Transformylase
In Complex With Beta-Gar And
10-Formyl-5,8,10-Trideazafolic Acid.
pdb|1C2T|B Chain B, New Insights Into Inhibitor Design From The Crystal
Structure And Nmr Studies Of E. Coli Gar Transformylase
In Complex With Beta-Gar And
10-Formyl-5,8,10-Trideazafolic Acid.
pdb|1JKX|A Chain A, Unexpected Formation Of An Epoxide-Derived Multisubstrate
Adduct Inhibitor On The Active Site Of Gar
Transformylase
pdb|1JKX|B Chain B, Unexpected Formation Of An Epoxide-Derived Multisubstrate
Adduct Inhibitor On The Active Site Of Gar
Transformylase
pdb|1JKX|C Chain C, Unexpected Formation Of An Epoxide-Derived Multisubstrate
Adduct Inhibitor On The Active Site Of Gar
Transformylase
pdb|1JKX|D Chain D, Unexpected Formation Of An Epoxide-Derived Multisubstrate
Adduct Inhibitor On The Active Site Of Gar
Transformylase
pdb|1CDE|A Chain A, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
pdb|1CDE|B Chain B, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
pdb|1CDE|C Chain C, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
pdb|1CDE|D Chain D, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
Length = 212
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 45/71 (63%)
Query: 206 DFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVT 265
D +VLA +M+ILS F+ Y ++NIH LLP + G +QA + G + G + HFVT
Sbjct: 81 DVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVT 140
Query: 266 EELDAGPIIEQ 276
+ELD GP+I Q
Sbjct: 141 DELDGGPVILQ 151
>pdb|1CDD|A Chain A, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
pdb|1CDD|B Chain B, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
Length = 212
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 45/71 (63%)
Query: 206 DFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVT 265
D +VLA +M+ILS F+ Y ++NIH LLP + G +QA + G + G + HFVT
Sbjct: 81 DVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVT 140
Query: 266 EELDAGPIIEQ 276
+ELD GP+I Q
Sbjct: 141 DELDGGPVILQ 151
>pdb|2GAR|A Chain A, A Ph-dependent Stablization Of An Active Site Loop
Observed From Low And High Ph Crystal Structures Of
Mutant Monomeric Glycinamide Ribonucleotide
Transformylase
pdb|3GAR|A Chain A, A Ph-dependent Stablization Of An Active Site Loop
Observed From Low And High Ph Crystal Structures Of
Mutant Monomeric Glycinamide Ribonucleotide
Transformylase
Length = 212
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 45/71 (63%)
Query: 206 DFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVT 265
D +VLA +M+ILS F+ Y ++NIH LLP + G +QA + G + G + HFVT
Sbjct: 81 DVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVT 140
Query: 266 EELDAGPIIEQ 276
+ELD GP+I Q
Sbjct: 141 DELDGGPVILQ 151
>pdb|4IQF|A Chain A, Crystal Structure Of Methyionyl-trna Formyltransferase
From Bacillus Anthracis
pdb|4IQF|B Chain B, Crystal Structure Of Methyionyl-trna Formyltransferase
From Bacillus Anthracis
pdb|4IQF|C Chain C, Crystal Structure Of Methyionyl-trna Formyltransferase
From Bacillus Anthracis
pdb|4IQF|D Chain D, Crystal Structure Of Methyionyl-trna Formyltransferase
From Bacillus Anthracis
Length = 317
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 55/116 (47%)
Query: 206 DFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVT 265
D +V A + QI+ + L + IN+H LLP +GG P A G + G T +
Sbjct: 84 DLIVTAAFGQIVPNEILEAPKYGCINVHASLLPELRGGAPIHYAIXEGKEKTGITIXYXV 143
Query: 266 EELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNK 321
E+LDAG I+ Q+ + R+ + K + L+K + + ++ P + N+
Sbjct: 144 EKLDAGDILTQVEVEIEERETTGSLFDKLSEAGAHLLSKTVPLLIQGKLEPIKQNE 199
>pdb|3DA8|A Chain A, Crystal Structure Of Purn From Mycobacterium Tuberculosis
pdb|3DA8|B Chain B, Crystal Structure Of Purn From Mycobacterium Tuberculosis
pdb|3DCJ|A Chain A, Crystal Structure Of Glycinamide Formyltransferase (Purn)
From Mycobacterium Tuberculosis In Complex With
5-Methyl-5, 6,7,8-Tetrahydrofolic Acid Derivative
pdb|3DCJ|B Chain B, Crystal Structure Of Glycinamide Formyltransferase (Purn)
From Mycobacterium Tuberculosis In Complex With
5-Methyl-5, 6,7,8-Tetrahydrofolic Acid Derivative
Length = 215
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 206 DFLVLARYMQILSGKFL-RSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFV 264
D +V A +M+IL +FL R YG+ +N H LLP+F G A GVK+ GAT H V
Sbjct: 91 DLVVSAGFMRILGPQFLSRFYGR-TLNTHPALLPAFPGTHGVADALAYGVKVTGATVHLV 149
Query: 265 TEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQ 300
D GPI+ Q V D+ T ++ + E++
Sbjct: 150 DAGTDTGPILAQQPVPVLDGDDEETLHERIKVTERR 185
>pdb|1FMT|A Chain A, Methionyl-Trnafmet Formyltransferase From Escherichia Coli
pdb|1FMT|B Chain B, Methionyl-Trnafmet Formyltransferase From Escherichia Coli
pdb|2FMT|A Chain A, Methionyl-Trnafmet Formyltransferase Complexed With
Formyl- Methionyl-Trnafmet
pdb|2FMT|B Chain B, Methionyl-Trnafmet Formyltransferase Complexed With
Formyl- Methionyl-Trnafmet
Length = 314
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 52/121 (42%)
Query: 204 NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHF 263
D +V+ Y IL L IN+H LLP ++G P +++ AG G T
Sbjct: 81 QADVMVVVAYGLILPKAVLEMPRLGCINVHGSLLPRWRGAAPIQRSLWAGDAETGVTIMQ 140
Query: 264 VTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTV 323
+ LD G ++ ++ ++ D T K ++ Q L +K + P ++T+
Sbjct: 141 MDVGLDTGDMLYKLSCPITAEDTSGTLYDKLAELGPQGLITTLKQLADGTAKPEVQDETL 200
Query: 324 V 324
V
Sbjct: 201 V 201
>pdb|3TQQ|A Chain A, Structure Of The Methionyl-Trna Formyltransferase (Fmt)
From Coxiella Burnetii
Length = 314
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%)
Query: 204 NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHF 263
N D V+ Y IL K L ++ +N+H LLP ++G P ++A AG + G +
Sbjct: 80 NADVXVVVAYGLILPKKALNAFRLGCVNVHASLLPRWRGAAPIQRAILAGDRETGISIXQ 139
Query: 264 VTEELDAGPIIEQMVERVSHRDN 286
E LD G ++ + +S D
Sbjct: 140 XNEGLDTGDVLAKSACVISSEDT 162
>pdb|3R8X|A Chain A, Crystal Structure Of Methionyl-Trna Formyltransferase From
Yersinia Pestis Complexed With L-Methionine
Length = 318
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 49/119 (41%)
Query: 204 NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHF 263
N D +V+ Y IL L IN+H LLP ++G P +++ AG + G T
Sbjct: 85 NADIMVVVAYGLILPAAVLAMPRLGCINVHGSLLPRWRGAAPIQRSVWAGDEKTGITIMQ 144
Query: 264 VTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKT 322
+ LD G ++ ++ + D T K + Q L ++ L N+T
Sbjct: 145 MDIGLDTGAMLHKIECAIQPEDTSATLYDKLAQLGPQGLLITLQQLAAGTALAEVQNET 203
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 40/96 (41%)
Query: 213 YMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGP 272
Y ++ + L+ N+H LLP ++G P G G T H + + DAG
Sbjct: 84 YRHLIYDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGA 143
Query: 273 IIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKS 308
I+ Q+ ++ D T K +Q L + + +
Sbjct: 144 IVAQLRIAIAPDDIAITLHHKLCHAARQLLEQTLPA 179
>pdb|1YRW|A Chain A, Crystal Structure Of E.Coli Arna Transformylase Domain
Length = 302
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 40/96 (41%)
Query: 213 YMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGP 272
Y ++ + L+ N+H LLP ++G P G G T H + + DAG
Sbjct: 84 YRHLIYDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGA 143
Query: 273 IIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKS 308
I+ Q+ ++ D T K +Q L + + +
Sbjct: 144 IVAQLRIAIAPDDIAITLHHKLCHAARQLLEQTLPA 179
>pdb|2BLN|A Chain A, N-Terminal Formyltransferase Domain Of Arna In Complex
With N-5-Formyltetrahydrofolate And Ump
pdb|2BLN|B Chain B, N-Terminal Formyltransferase Domain Of Arna In Complex
With N-5-Formyltetrahydrofolate And Ump
Length = 305
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 40/96 (41%)
Query: 213 YMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGP 272
Y ++ + L+ N+H LLP ++G P G G T H + + DAG
Sbjct: 84 YRHLIYDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGA 143
Query: 273 IIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKS 308
I+ Q+ ++ D T K +Q L + + +
Sbjct: 144 IVAQLRIAIAPDDIAITLHHKLCHAARQLLEQTLPA 179
>pdb|3Q0I|A Chain A, Methionyl-Trna Formyltransferase From Vibrio Cholerae
Length = 318
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 44/108 (40%)
Query: 204 NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHF 263
N D V+ Y +L L + IN+H +LP ++G P +++ AG G T
Sbjct: 85 NADLXVVVAYGLLLPKVVLDTPKLGCINVHGSILPRWRGAAPIQRSIWAGDSETGVTIXQ 144
Query: 264 VTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCE 311
LD G ++ + D + K ++ Q L + ++ +
Sbjct: 145 XDVGLDTGDXLKIATLPIEASDTSASXYDKLAELGPQALLECLQDIAQ 192
>pdb|1VEP|A Chain A, Crystal Structure Analysis Of Triple (T47mY164ET328N)
MALTOSE OF BACILLUS CEREUS BETA-Amylase At Ph 6.5
Length = 516
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 51/118 (43%), Gaps = 14/118 (11%)
Query: 215 QILSGKFLRSYGKDVINIHHGLLPSFKG--GKPAKQAFDAGVKL-IGATSHFVTEELDAG 271
Q L +L YGKD + + G+L + G+ A AFD ++ IGA V + +
Sbjct: 239 QFLMNGYLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQYN-N 297
Query: 272 PIIEQMVERVSHRDN----LRTFVQKSEDVEKQCLAKAIK-SYCELRVLPYEMNKTVV 324
P I E+ + ++ L F DV CL K SY E Y M KT+V
Sbjct: 298 PTIPHGAEKPAGYNDYSHLLDAFKSAKLDVNFTCLEMTDKGSYPE-----YSMPKTLV 350
>pdb|1VEO|A Chain A, Crystal Structure Analysis Of Y164fMALTOSE OF BACILLUS
Cereus Beta-Amylase At Ph 4.6
Length = 516
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 51/118 (43%), Gaps = 14/118 (11%)
Query: 215 QILSGKFLRSYGKDVINIHHGLLPSFKG--GKPAKQAFDAGVKL-IGATSHFVTEELDAG 271
Q L +L YGKD + + G+L + G+ A AFD ++ IGA V + +
Sbjct: 239 QFLMNGYLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQYN-N 297
Query: 272 PIIEQMVERVSHRDN----LRTFVQKSEDVEKQCLAKAIK-SYCELRVLPYEMNKTVV 324
P I E+ + ++ L F DV CL K SY E Y M KT+V
Sbjct: 298 PTIPHGAEKPAGYNDYSHLLDAFKSAKLDVTFTCLEMTDKGSYPE-----YSMPKTLV 350
>pdb|1B90|A Chain A, Bacillus Cereus Beta-Amylase Apo Form
pdb|1B9Z|A Chain A, Bacillus Cereus Beta-Amylase Complexed With Maltose
pdb|5BCA|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|1J18|A Chain A, Crystal Structure Of A Beta-Amylase From Bacillus Cereus
Var. Mycoides Cocrystallized With Maltose
pdb|1J0Y|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Z|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J10|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J11|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J12|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1VEM|A Chain A, Crystal Structure Analysis Of Bacillus Cereus Beta-amylase
At The Optimum Ph (6.5)
Length = 516
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 51/118 (43%), Gaps = 14/118 (11%)
Query: 215 QILSGKFLRSYGKDVINIHHGLLPSFKG--GKPAKQAFDAGVKL-IGATSHFVTEELDAG 271
Q L +L YGKD + + G+L + G+ A AFD ++ IGA V + +
Sbjct: 239 QFLMNGYLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQYN-N 297
Query: 272 PIIEQMVERVSHRDN----LRTFVQKSEDVEKQCLAKAIK-SYCELRVLPYEMNKTVV 324
P I E+ + ++ L F DV CL K SY E Y M KT+V
Sbjct: 298 PTIPHGAEKPAGYNDYSHLLDAFKSAKLDVTFTCLEMTDKGSYPE-----YSMPKTLV 350
>pdb|1ITC|A Chain A, Beta-amylase From Bacillus Cereus Var. Mycoides Complexed
With Maltopentaose
Length = 516
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 51/118 (43%), Gaps = 14/118 (11%)
Query: 215 QILSGKFLRSYGKDVINIHHGLLPSFKG--GKPAKQAFDAGVKL-IGATSHFVTEELDAG 271
Q L +L YGKD + + G+L + G+ A AFD ++ IGA V + +
Sbjct: 239 QFLMNGYLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQYN-N 297
Query: 272 PIIEQMVERVSHRDN----LRTFVQKSEDVEKQCLAKAIK-SYCELRVLPYEMNKTVV 324
P I E+ + ++ L F DV CL K SY E Y M KT+V
Sbjct: 298 PTIPHGAEKPAGYNDYSHLLDAFKSAKLDVTFTCLEMTDKGSYPE-----YSMPKTLV 350
>pdb|1VEN|A Chain A, Crystal Structure Analysis Of Y164eMALTOSE OF BACILUS
Cereus Beta-Amylase At Ph 4.6
Length = 516
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 51/118 (43%), Gaps = 14/118 (11%)
Query: 215 QILSGKFLRSYGKDVINIHHGLLPSFKG--GKPAKQAFDAGVKL-IGATSHFVTEELDAG 271
Q L +L YGKD + + G+L + G+ A AFD ++ IGA V + +
Sbjct: 239 QFLMNGYLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQYN-N 297
Query: 272 PIIEQMVERVSHRDN----LRTFVQKSEDVEKQCLAKAIK-SYCELRVLPYEMNKTVV 324
P I E+ + ++ L F DV CL K SY E Y M KT+V
Sbjct: 298 PTIPHGAEKPAGYNDYSHLLDAFKSAKLDVTFTCLEMTDKGSYPE-----YSMPKTLV 350
>pdb|1QRI|A Chain A, X-Ray Structure Of The Dna-Eco Ri Endonuclease Complexes
With An E144d Mutation At 2.7 A
Length = 261
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 226 GKDVINIHHGLLPSFKGGK---PAKQAFDAGVKLIGATSHFVTEE 267
GKD+INI +GLL +G + A A D K I ++F+ E
Sbjct: 100 GKDIINIRNGLLVGKRGDQDLMAAGNAIDRSHKNISEIANFMLSE 144
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,182,270
Number of Sequences: 62578
Number of extensions: 364918
Number of successful extensions: 834
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 796
Number of HSP's gapped (non-prelim): 35
length of query: 325
length of database: 14,973,337
effective HSP length: 99
effective length of query: 226
effective length of database: 8,778,115
effective search space: 1983853990
effective search space used: 1983853990
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)