Query 020508
Match_columns 325
No_of_seqs 294 out of 2574
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 02:57:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020508.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020508hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00655 PurU formyltetrahydr 100.0 3.7E-70 8.1E-75 511.1 35.8 274 43-325 1-280 (280)
2 PRK13010 purU formyltetrahydro 100.0 4.3E-69 9.2E-74 505.7 35.3 277 39-325 6-289 (289)
3 PRK13011 formyltetrahydrofolat 100.0 1.9E-68 4.1E-73 501.2 36.3 277 39-325 4-285 (286)
4 PRK06027 purU formyltetrahydro 100.0 7.5E-68 1.6E-72 497.7 35.7 276 40-325 4-285 (286)
5 PLN02828 formyltetrahydrofolat 100.0 1.7E-65 3.8E-70 474.5 33.7 267 59-325 1-268 (268)
6 COG0788 PurU Formyltetrahydrof 100.0 1.6E-63 3.5E-68 450.3 31.0 279 38-325 3-286 (287)
7 COG0299 PurN Folate-dependent 100.0 2.5E-49 5.5E-54 345.5 23.0 192 129-324 1-198 (200)
8 PLN02331 phosphoribosylglycina 100.0 2.5E-46 5.4E-51 336.0 25.5 191 130-324 1-202 (207)
9 TIGR00639 PurN phosphoribosylg 100.0 8.4E-46 1.8E-50 329.1 24.5 183 129-314 1-189 (190)
10 PRK05647 purN phosphoribosylgl 100.0 1.5E-45 3.3E-50 330.0 24.5 188 128-318 1-194 (200)
11 KOG3076 5'-phosphoribosylglyci 100.0 4.3E-45 9.3E-50 314.9 21.3 194 127-323 5-206 (206)
12 PLN02285 methionyl-tRNA formyl 100.0 2.5E-42 5.3E-47 331.3 22.6 189 125-313 3-202 (334)
13 COG0223 Fmt Methionyl-tRNA for 100.0 7.3E-42 1.6E-46 321.2 19.8 181 128-317 1-192 (307)
14 PF00551 Formyl_trans_N: Formy 100.0 3.5E-41 7.6E-46 297.5 20.9 175 129-306 1-181 (181)
15 PRK06988 putative formyltransf 100.0 1.5E-39 3.2E-44 309.8 21.9 181 128-317 2-190 (312)
16 TIGR00460 fmt methionyl-tRNA f 100.0 2.1E-39 4.6E-44 308.9 21.8 179 129-316 1-190 (313)
17 PRK00005 fmt methionyl-tRNA fo 100.0 2.3E-39 5.1E-44 308.2 21.7 181 129-318 1-192 (309)
18 PRK08125 bifunctional UDP-gluc 100.0 3E-36 6.6E-41 313.1 22.3 181 129-318 1-189 (660)
19 PRK07579 hypothetical protein; 100.0 1.2E-35 2.7E-40 271.4 18.4 172 128-317 1-175 (245)
20 KOG3082 Methionyl-tRNA formylt 99.9 5.3E-25 1.1E-29 202.7 9.0 173 128-311 6-189 (338)
21 KOG2452 Formyltetrahydrofolate 99.9 1.6E-22 3.4E-27 195.2 9.5 182 129-315 1-189 (881)
22 cd04893 ACT_GcvR_1 ACT domains 99.7 2.2E-16 4.8E-21 120.5 8.9 71 42-116 1-71 (77)
23 cd04870 ACT_PSP_1 CT domains f 99.6 8.2E-16 1.8E-20 116.5 8.2 70 44-116 1-70 (75)
24 COG3830 ACT domain-containing 99.6 4.2E-16 9E-21 120.4 5.9 74 41-116 2-75 (90)
25 cd04875 ACT_F4HF-DF N-terminal 99.6 2.4E-15 5.2E-20 113.5 9.2 73 44-116 1-73 (74)
26 PRK11589 gcvR glycine cleavage 99.6 7E-15 1.5E-19 130.6 10.0 94 24-118 76-174 (190)
27 cd04872 ACT_1ZPV ACT domain pr 99.6 7.1E-15 1.5E-19 114.7 8.6 74 42-117 1-74 (88)
28 PF13740 ACT_6: ACT domain; PD 99.6 8.5E-15 1.8E-19 111.4 7.3 72 41-116 1-72 (76)
29 cd04869 ACT_GcvR_2 ACT domains 99.5 5.6E-14 1.2E-18 107.4 9.2 72 44-116 1-76 (81)
30 PRK00194 hypothetical protein; 99.5 6.2E-14 1.3E-18 109.7 8.7 73 42-116 3-75 (90)
31 PRK11589 gcvR glycine cleavage 99.5 2.1E-13 4.5E-18 121.3 11.6 107 38-148 4-115 (190)
32 COG2716 GcvR Glycine cleavage 99.3 1.8E-12 3.8E-17 111.5 7.0 94 24-118 73-171 (176)
33 cd04871 ACT_PSP_2 ACT domains 99.0 4.4E-10 9.5E-15 87.2 4.2 71 44-116 1-79 (84)
34 COG2716 GcvR Glycine cleavage 98.7 1E-07 2.2E-12 82.3 8.7 72 41-116 4-75 (176)
35 PF01842 ACT: ACT domain; Int 98.6 1.1E-07 2.4E-12 68.9 6.9 65 43-110 1-65 (66)
36 CHL00100 ilvH acetohydroxyacid 98.4 6E-07 1.3E-11 78.8 7.8 75 42-118 2-76 (174)
37 PF13291 ACT_4: ACT domain; PD 98.4 6.2E-07 1.4E-11 68.2 5.9 68 39-110 3-70 (80)
38 cd04925 ACT_ACR_2 ACT domain-c 98.2 5.4E-06 1.2E-10 62.5 7.8 47 44-92 2-48 (74)
39 PRK08577 hypothetical protein; 98.1 2.2E-05 4.7E-10 66.2 9.9 76 36-111 50-125 (136)
40 cd04886 ACT_ThrD-II-like C-ter 98.0 3.1E-05 6.7E-10 56.4 7.1 63 45-108 1-66 (73)
41 cd04887 ACT_MalLac-Enz ACT_Mal 97.9 4.2E-05 9.2E-10 56.8 7.6 61 45-110 2-62 (74)
42 cd04888 ACT_PheB-BS C-terminal 97.9 5.8E-05 1.2E-09 56.3 7.9 64 44-108 2-65 (76)
43 cd04873 ACT_UUR-ACR-like ACT d 97.9 9.3E-05 2E-09 53.9 8.5 49 44-94 2-50 (70)
44 PRK06737 acetolactate synthase 97.9 6.5E-05 1.4E-09 57.1 7.4 68 42-111 2-69 (76)
45 cd04909 ACT_PDH-BS C-terminal 97.9 6.1E-05 1.3E-09 55.3 6.9 64 43-109 2-65 (69)
46 cd04899 ACT_ACR-UUR-like_2 C-t 97.9 0.00012 2.6E-09 53.7 8.5 49 44-94 2-50 (70)
47 cd04878 ACT_AHAS N-terminal AC 97.8 0.00011 2.5E-09 53.2 7.7 65 44-110 2-66 (72)
48 cd04881 ACT_HSDH-Hom ACT_HSDH_ 97.7 0.00012 2.7E-09 54.1 6.8 65 43-111 1-65 (79)
49 cd04928 ACT_TyrKc Uncharacteri 97.7 0.00037 8.1E-09 51.8 9.2 64 43-108 2-65 (68)
50 cd04902 ACT_3PGDH-xct C-termin 97.7 0.00014 2.9E-09 53.7 7.0 62 45-110 2-63 (73)
51 PRK04435 hypothetical protein; 97.7 0.00018 4E-09 61.5 8.7 81 23-109 55-135 (147)
52 cd04876 ACT_RelA-SpoT ACT dom 97.7 0.00014 3E-09 51.3 6.7 62 45-108 1-62 (71)
53 PRK13562 acetolactate synthase 97.7 0.00018 3.9E-09 55.5 7.2 73 42-115 2-74 (84)
54 cd04874 ACT_Af1403 N-terminal 97.7 0.00038 8.3E-09 50.6 8.6 64 44-111 2-65 (72)
55 PRK11152 ilvM acetolactate syn 97.6 0.00034 7.4E-09 53.2 8.1 68 41-111 2-69 (76)
56 cd04879 ACT_3PGDH-like ACT_3PG 97.6 0.00035 7.6E-09 50.4 7.5 62 45-110 2-63 (71)
57 PRK08178 acetolactate synthase 97.5 0.0005 1.1E-08 54.4 8.0 72 39-113 5-76 (96)
58 cd04877 ACT_TyrR N-terminal AC 97.5 0.00031 6.7E-09 52.6 6.4 58 44-110 2-59 (74)
59 PRK03381 PII uridylyl-transfer 97.5 0.003 6.5E-08 67.7 15.6 71 40-112 597-668 (774)
60 PRK11895 ilvH acetolactate syn 97.4 0.00064 1.4E-08 59.1 8.1 73 42-116 2-74 (161)
61 cd04927 ACT_ACR-like_2 Second 97.4 0.0015 3.3E-08 49.4 9.1 34 44-77 2-35 (76)
62 TIGR00119 acolac_sm acetolacta 97.4 0.00065 1.4E-08 58.8 7.8 72 43-116 2-73 (157)
63 cd04883 ACT_AcuB C-terminal AC 97.4 0.0019 4.1E-08 47.5 9.0 62 44-109 3-64 (72)
64 cd04926 ACT_ACR_4 C-terminal 97.3 0.0017 3.7E-08 48.4 8.6 34 44-77 3-36 (72)
65 cd04900 ACT_UUR-like_1 ACT dom 97.3 0.0026 5.7E-08 47.5 9.5 47 44-91 3-49 (73)
66 cd04884 ACT_CBS C-terminal ACT 97.3 0.0015 3.2E-08 48.5 7.8 63 45-108 2-65 (72)
67 cd04897 ACT_ACR_3 ACT domain-c 97.3 0.00053 1.1E-08 52.0 5.1 45 43-87 2-48 (75)
68 PF13710 ACT_5: ACT domain; PD 97.2 0.0014 3E-08 48.0 6.9 59 51-111 1-59 (63)
69 cd04903 ACT_LSD C-terminal ACT 97.2 0.0023 4.9E-08 46.2 8.1 62 45-110 2-63 (71)
70 cd04901 ACT_3PGDH C-terminal A 97.2 0.00065 1.4E-08 49.5 5.0 60 45-110 2-61 (69)
71 cd04889 ACT_PDH-BS-like C-term 97.2 0.00074 1.6E-08 47.5 5.0 46 45-91 1-46 (56)
72 cd04905 ACT_CM-PDT C-terminal 97.2 0.0032 6.9E-08 47.8 8.7 65 44-111 3-68 (80)
73 cd04895 ACT_ACR_1 ACT domain-c 97.2 0.0043 9.2E-08 46.7 9.0 35 43-77 2-36 (72)
74 TIGR01693 UTase_glnD [Protein- 97.1 0.00099 2.1E-08 72.1 7.1 68 40-107 777-846 (850)
75 cd04880 ACT_AAAH-PDT-like ACT 97.1 0.0036 7.7E-08 46.8 8.0 67 45-111 2-69 (75)
76 cd04908 ACT_Bt0572_1 N-termina 97.0 0.0032 7E-08 45.9 6.9 58 44-109 3-60 (66)
77 cd04896 ACT_ACR-like_3 ACT dom 96.9 0.0096 2.1E-07 45.2 9.0 33 44-76 2-34 (75)
78 cd04882 ACT_Bt0572_2 C-termina 96.9 0.0044 9.6E-08 44.3 6.8 58 45-108 2-59 (65)
79 TIGR00719 sda_beta L-serine de 96.8 0.0058 1.3E-07 55.2 8.1 52 42-93 148-199 (208)
80 cd02116 ACT ACT domains are co 96.6 0.012 2.5E-07 39.0 7.1 33 45-77 1-33 (60)
81 cd04885 ACT_ThrD-I Tandem C-te 96.5 0.01 2.2E-07 43.6 6.7 61 45-108 1-61 (68)
82 PRK10872 relA (p)ppGpp synthet 96.5 0.0076 1.6E-07 63.9 8.2 72 40-115 664-735 (743)
83 PRK07334 threonine dehydratase 96.5 0.0095 2.1E-07 59.0 8.4 69 37-109 321-392 (403)
84 PF13840 ACT_7: ACT domain ; P 96.5 0.0073 1.6E-07 44.2 5.6 34 42-75 6-43 (65)
85 cd04931 ACT_PAH ACT domain of 96.3 0.043 9.4E-07 43.0 9.2 70 43-116 15-85 (90)
86 PRK11092 bifunctional (p)ppGpp 96.2 0.017 3.7E-07 61.2 8.6 71 40-115 624-694 (702)
87 TIGR00691 spoT_relA (p)ppGpp s 96.0 0.021 4.7E-07 60.3 8.3 67 40-111 608-674 (683)
88 COG0317 SpoT Guanosine polypho 95.9 0.02 4.3E-07 60.2 7.1 68 38-110 623-690 (701)
89 PRK11790 D-3-phosphoglycerate 95.9 0.02 4.4E-07 56.9 6.9 65 40-110 336-400 (409)
90 COG4492 PheB ACT domain-contai 95.9 0.043 9.4E-07 45.8 7.5 68 41-109 71-138 (150)
91 PF00185 OTCace: Aspartate/orn 95.8 0.057 1.2E-06 46.6 8.4 102 128-242 2-125 (158)
92 PRK05092 PII uridylyl-transfer 95.7 0.019 4.1E-07 62.8 6.5 72 41-112 842-916 (931)
93 COG0440 IlvH Acetolactate synt 95.5 0.12 2.6E-06 44.9 9.4 98 40-141 2-99 (163)
94 COG1707 ACT domain-containing 95.5 0.057 1.2E-06 46.9 7.3 64 44-110 4-67 (218)
95 cd04904 ACT_AAAH ACT domain of 95.5 0.097 2.1E-06 39.2 7.7 60 46-110 4-64 (74)
96 PRK05092 PII uridylyl-transfer 95.3 0.4 8.7E-06 52.7 15.0 69 41-110 731-804 (931)
97 TIGR01127 ilvA_1Cterm threonin 95.3 0.08 1.7E-06 51.9 8.5 71 38-109 301-374 (380)
98 PRK13581 D-3-phosphoglycerate 95.3 0.041 8.9E-07 56.5 6.7 65 42-110 452-516 (526)
99 TIGR01327 PGDH D-3-phosphoglyc 95.2 0.037 8E-07 56.8 6.3 64 42-109 451-514 (525)
100 cd04913 ACT_AKii-LysC-BS-like_ 95.2 0.095 2.1E-06 38.0 6.9 66 45-115 4-70 (75)
101 PRK03381 PII uridylyl-transfer 95.2 0.099 2.1E-06 56.2 9.6 51 41-93 706-756 (774)
102 PRK08818 prephenate dehydrogen 94.7 0.13 2.8E-06 50.6 8.2 64 41-108 294-358 (370)
103 cd04894 ACT_ACR-like_1 ACT dom 94.6 0.25 5.5E-06 36.0 7.4 64 44-110 2-68 (69)
104 PRK06545 prephenate dehydrogen 94.6 0.099 2.1E-06 51.0 7.1 55 38-94 286-340 (359)
105 KOG2663 Acetolactate synthase, 94.4 0.061 1.3E-06 49.6 4.8 75 40-116 75-149 (309)
106 COG4747 ACT domain-containing 94.3 1.1 2.3E-05 37.1 11.1 122 44-185 5-134 (142)
107 cd04929 ACT_TPH ACT domain of 94.3 0.41 8.9E-06 36.0 8.3 60 47-111 5-65 (74)
108 PRK11899 prephenate dehydratas 94.3 0.26 5.6E-06 46.6 8.9 66 42-110 194-260 (279)
109 PRK06382 threonine dehydratase 94.2 0.2 4.3E-06 49.7 8.3 70 39-109 327-399 (406)
110 PRK08198 threonine dehydratase 93.8 0.22 4.8E-06 49.3 7.8 74 34-108 319-395 (404)
111 cd04930 ACT_TH ACT domain of t 93.5 0.56 1.2E-05 38.5 8.5 63 43-110 42-105 (115)
112 PRK03059 PII uridylyl-transfer 93.5 0.41 8.9E-06 52.1 9.8 38 41-78 785-822 (856)
113 COG3978 Acetolactate synthase 93.4 0.58 1.3E-05 35.7 7.5 68 41-111 2-69 (86)
114 PRK09436 thrA bifunctional asp 93.3 0.85 1.8E-05 49.5 11.8 102 41-162 395-504 (819)
115 PRK05007 PII uridylyl-transfer 93.1 0.13 2.8E-06 56.1 5.4 47 40-86 806-854 (884)
116 PLN02342 ornithine carbamoyltr 92.9 1.2 2.5E-05 43.6 11.0 44 198-243 253-313 (348)
117 PRK04284 ornithine carbamoyltr 92.7 1.3 2.8E-05 43.0 10.9 104 127-244 154-281 (332)
118 PRK01759 glnD PII uridylyl-tra 92.6 0.59 1.3E-05 50.9 9.5 50 41-91 676-725 (854)
119 PRK05007 PII uridylyl-transfer 92.5 0.64 1.4E-05 50.8 9.6 50 41-91 700-749 (884)
120 cd04892 ACT_AK-like_2 ACT doma 92.5 0.9 1.9E-05 31.4 7.4 33 44-76 2-37 (65)
121 PRK01759 glnD PII uridylyl-tra 92.2 0.2 4.4E-06 54.4 5.3 47 40-86 781-829 (854)
122 cd04932 ACT_AKiii-LysC-EC_1 AC 92.2 0.81 1.8E-05 34.4 7.1 32 44-75 3-37 (75)
123 PRK06349 homoserine dehydrogen 92.1 0.86 1.9E-05 45.6 9.3 68 39-111 345-412 (426)
124 PRK00779 ornithine carbamoyltr 91.8 2 4.3E-05 41.1 10.9 101 128-243 152-271 (304)
125 COG2150 Predicted regulator of 91.6 0.87 1.9E-05 39.4 7.4 33 45-77 98-130 (167)
126 PRK04374 PII uridylyl-transfer 91.6 4.8 0.0001 44.1 14.9 66 41-108 689-757 (869)
127 cd04906 ACT_ThrD-I_1 First of 91.6 1.3 2.7E-05 34.0 7.7 32 43-76 2-33 (85)
128 PRK00275 glnD PII uridylyl-tra 91.3 0.81 1.8E-05 50.1 8.7 52 41-93 703-754 (895)
129 COG0077 PheA Prephenate dehydr 91.2 1.2 2.7E-05 42.0 8.7 65 42-111 194-261 (279)
130 cd04937 ACT_AKi-DapG-BS_2 ACT 91.1 1.6 3.4E-05 31.4 7.4 33 43-75 2-37 (64)
131 COG2844 GlnD UTP:GlnB (protein 91.0 0.8 1.7E-05 48.9 7.9 45 41-85 790-836 (867)
132 PRK10622 pheA bifunctional cho 90.8 1.1 2.4E-05 44.3 8.4 67 42-111 297-364 (386)
133 PRK01713 ornithine carbamoyltr 90.8 2.4 5.3E-05 41.1 10.6 103 127-243 155-281 (334)
134 PRK00275 glnD PII uridylyl-tra 90.8 1.2 2.6E-05 48.8 9.3 49 41-91 813-861 (895)
135 cd04922 ACT_AKi-HSDH-ThrA_2 AC 90.7 1.8 3.9E-05 30.5 7.5 45 44-94 3-50 (66)
136 PRK03059 PII uridylyl-transfer 90.7 8.5 0.00018 42.1 15.7 67 41-108 677-747 (856)
137 PRK09466 metL bifunctional asp 90.6 2.9 6.3E-05 45.4 12.0 101 41-163 390-499 (810)
138 PRK08526 threonine dehydratase 90.6 1 2.2E-05 44.8 8.0 41 36-76 320-360 (403)
139 PRK04374 PII uridylyl-transfer 90.6 1.5 3.4E-05 47.8 9.9 38 41-78 795-832 (869)
140 cd04919 ACT_AK-Hom3_2 ACT doma 90.4 2 4.4E-05 30.5 7.5 45 44-94 3-50 (66)
141 PRK02255 putrescine carbamoylt 89.9 3.1 6.8E-05 40.4 10.6 100 128-242 154-277 (338)
142 cd04924 ACT_AK-Arch_2 ACT doma 89.7 2.6 5.6E-05 29.7 7.5 46 43-94 2-50 (66)
143 PRK10820 DNA-binding transcrip 89.6 0.91 2E-05 46.6 6.9 32 44-75 2-33 (520)
144 TIGR00658 orni_carb_tr ornithi 89.5 4 8.7E-05 39.0 10.8 100 128-242 148-269 (304)
145 TIGR00670 asp_carb_tr aspartat 89.4 3.9 8.5E-05 39.1 10.7 159 55-236 84-264 (301)
146 cd04912 ACT_AKiii-LysC-EC-like 89.4 1.9 4.1E-05 32.0 6.8 32 44-75 3-37 (75)
147 TIGR01693 UTase_glnD [Protein- 88.8 2.2 4.9E-05 46.4 9.6 42 40-82 666-707 (850)
148 TIGR01761 thiaz-red thiazoliny 88.8 0.83 1.8E-05 44.5 5.6 52 127-185 2-53 (343)
149 TIGR02079 THD1 threonine dehyd 88.6 2 4.3E-05 42.8 8.3 73 36-109 319-391 (409)
150 PRK08639 threonine dehydratase 88.2 2.1 4.6E-05 42.7 8.3 73 36-109 330-402 (420)
151 COG2102 Predicted ATPases of P 87.9 5.1 0.00011 36.6 9.7 113 129-254 1-136 (223)
152 PRK11898 prephenate dehydratas 87.4 3.4 7.4E-05 39.1 8.8 67 42-111 196-264 (283)
153 PLN02819 lysine-ketoglutarate 87.1 19 0.00041 40.2 15.3 160 42-212 463-656 (1042)
154 TIGR00290 MJ0570_dom MJ0570-re 87.0 5.4 0.00012 36.5 9.5 78 129-210 1-91 (223)
155 cd04935 ACT_AKiii-DAPDC_1 ACT 87.0 2.3 5E-05 31.9 5.9 27 49-75 11-37 (75)
156 PRK13376 pyrB bifunctional asp 86.9 5.7 0.00012 40.9 10.5 102 128-243 174-299 (525)
157 PRK08300 acetaldehyde dehydrog 86.7 2.2 4.7E-05 40.9 7.0 73 127-213 3-79 (302)
158 COG3283 TyrR Transcriptional r 86.7 1.1 2.4E-05 44.0 5.0 90 44-152 2-92 (511)
159 cd04916 ACT_AKiii-YclM-BS_2 AC 86.5 5.5 0.00012 28.0 7.6 45 44-94 3-50 (66)
160 cd04891 ACT_AK-LysC-DapG-like_ 86.0 4.3 9.3E-05 27.6 6.7 27 50-76 9-35 (61)
161 PRK04523 N-acetylornithine car 85.9 6.2 0.00013 38.3 9.8 57 175-242 223-299 (335)
162 PF01902 ATP_bind_4: ATP-bindi 85.7 3.4 7.3E-05 37.7 7.4 85 129-220 1-98 (218)
163 PLN02527 aspartate carbamoyltr 85.5 9 0.0002 36.7 10.6 161 54-236 84-267 (306)
164 PLN02317 arogenate dehydratase 85.4 4.9 0.00011 39.7 8.9 34 43-76 284-317 (382)
165 PRK03515 ornithine carbamoyltr 85.0 9.1 0.0002 37.2 10.5 102 128-243 156-281 (336)
166 cd04918 ACT_AK1-AT_2 ACT domai 85.0 5.7 0.00012 28.5 7.1 60 43-113 2-63 (65)
167 cd04933 ACT_AK1-AT_1 ACT domai 85.0 3.1 6.7E-05 31.6 5.8 27 49-75 11-37 (78)
168 cd04915 ACT_AK-Ectoine_2 ACT d 84.6 8.1 0.00018 28.0 7.8 60 43-113 3-64 (66)
169 PF01408 GFO_IDH_MocA: Oxidore 84.6 2 4.4E-05 34.1 5.0 68 129-214 1-72 (120)
170 TIGR00289 conserved hypothetic 84.6 9.3 0.0002 34.9 9.8 77 129-210 1-91 (222)
171 cd04868 ACT_AK-like ACT domain 84.5 2.4 5.1E-05 28.5 4.6 33 44-76 2-37 (60)
172 PRK02102 ornithine carbamoyltr 84.5 11 0.00023 36.7 10.6 99 127-239 154-275 (331)
173 cd04936 ACT_AKii-LysC-BS-like_ 84.4 7 0.00015 27.0 7.2 32 44-75 2-36 (63)
174 PRK14805 ornithine carbamoyltr 83.8 12 0.00026 35.8 10.6 99 128-243 147-267 (302)
175 cd04923 ACT_AK-LysC-DapG-like_ 82.6 8.9 0.00019 26.4 7.2 32 44-75 2-36 (63)
176 PRK08841 aspartate kinase; Val 82.2 4.5 9.8E-05 40.1 7.3 63 41-116 317-379 (392)
177 COG2061 ACT-domain-containing 81.9 33 0.00072 29.6 12.0 114 40-161 3-119 (170)
178 TIGR01270 Trp_5_monoox tryptop 81.8 7.1 0.00015 39.5 8.4 65 42-111 31-97 (464)
179 TIGR03316 ygeW probable carbam 81.4 29 0.00062 34.1 12.4 59 175-243 224-320 (357)
180 PRK12562 ornithine carbamoyltr 80.8 18 0.00039 35.1 10.7 101 128-242 156-280 (334)
181 PRK00907 hypothetical protein; 80.5 16 0.00035 28.7 8.4 69 40-112 15-85 (92)
182 cd01994 Alpha_ANH_like_IV This 80.2 18 0.00039 32.2 9.7 55 130-188 1-65 (194)
183 PRK06635 aspartate kinase; Rev 79.4 6.3 0.00014 38.9 7.3 60 42-114 340-402 (404)
184 TIGR01921 DAP-DH diaminopimela 79.1 10 0.00022 36.8 8.3 34 128-165 3-37 (324)
185 PRK06291 aspartate kinase; Pro 79.1 26 0.00057 35.4 11.7 35 42-76 321-358 (465)
186 TIGR03215 ac_ald_DH_ac acetald 79.0 16 0.00034 34.8 9.4 71 128-213 1-73 (285)
187 cd04920 ACT_AKiii-DAPDC_2 ACT 78.6 11 0.00025 26.9 6.6 32 44-75 2-36 (63)
188 PRK00227 glnD PII uridylyl-tra 78.5 10 0.00022 40.5 8.7 65 41-109 545-612 (693)
189 PRK08192 aspartate carbamoyltr 78.4 33 0.00071 33.4 11.6 102 128-242 159-279 (338)
190 PF00448 SRP54: SRP54-type pro 78.2 12 0.00027 33.2 8.1 84 131-216 4-95 (196)
191 TIGR01268 Phe4hydrox_tetr phen 77.9 14 0.00031 37.1 9.1 65 43-111 17-82 (436)
192 COG4747 ACT domain-containing 77.7 10 0.00022 31.4 6.6 62 42-110 69-130 (142)
193 cd04921 ACT_AKi-HSDH-ThrA-like 77.7 16 0.00035 26.8 7.5 33 44-76 3-38 (80)
194 PRK10696 tRNA 2-thiocytidine b 77.5 19 0.00041 33.3 9.4 61 128-188 29-94 (258)
195 cd04934 ACT_AK-Hom3_1 CT domai 77.4 7.4 0.00016 29.0 5.5 25 51-75 13-37 (73)
196 PRK12483 threonine dehydratase 77.1 12 0.00027 38.5 8.7 69 36-108 339-408 (521)
197 PRK08306 dipicolinate synthase 75.9 11 0.00024 35.8 7.5 87 128-233 152-239 (296)
198 COG3603 Uncharacterized conser 75.8 10 0.00022 31.4 6.1 59 43-112 64-125 (128)
199 PRK11891 aspartate carbamoyltr 75.6 34 0.00074 34.4 11.2 98 128-236 241-356 (429)
200 TIGR00656 asp_kin_monofn aspar 75.0 9.5 0.00021 37.6 7.1 60 42-114 337-399 (401)
201 COG0673 MviM Predicted dehydro 74.9 11 0.00024 35.6 7.3 71 127-212 2-75 (342)
202 PRK02047 hypothetical protein; 74.7 29 0.00063 27.1 8.4 72 37-113 11-85 (91)
203 PRK14804 ornithine carbamoyltr 74.1 35 0.00075 32.8 10.5 98 128-243 153-276 (311)
204 PRK05601 DNA polymerase III su 73.6 12 0.00026 36.9 7.2 83 110-203 261-368 (377)
205 PRK13814 pyrB aspartate carbam 73.6 26 0.00056 33.7 9.4 102 140-243 137-270 (310)
206 PRK09181 aspartate kinase; Val 72.6 59 0.0013 33.2 12.2 81 42-138 329-412 (475)
207 cd04890 ACT_AK-like_1 ACT doma 72.6 14 0.00029 25.9 5.6 25 51-75 12-36 (62)
208 PRK15385 magnesium transport p 72.5 48 0.001 30.4 10.4 80 41-122 141-222 (225)
209 PLN02550 threonine dehydratase 72.4 12 0.00026 39.2 7.2 67 39-109 414-480 (591)
210 PRK05447 1-deoxy-D-xylulose 5- 72.3 45 0.00098 33.1 10.9 55 128-188 1-57 (385)
211 cd04917 ACT_AKiii-LysC-EC_2 AC 72.0 25 0.00054 24.8 7.0 31 43-75 2-35 (64)
212 PRK08210 aspartate kinase I; R 70.6 14 0.00031 36.4 7.2 62 41-115 338-402 (403)
213 cd04914 ACT_AKi-DapG-BS_1 ACT 70.5 31 0.00067 25.0 7.3 33 43-75 2-35 (67)
214 COG0394 Wzb Protein-tyrosine-p 70.5 8.7 0.00019 32.4 4.9 80 128-214 2-86 (139)
215 PRK09224 threonine dehydratase 69.8 25 0.00053 36.1 8.9 68 38-109 324-392 (504)
216 TIGR03590 PseG pseudaminic aci 69.4 33 0.0007 32.1 9.0 70 138-213 14-89 (279)
217 TIGR01124 ilvA_2Cterm threonin 69.4 20 0.00043 36.8 8.0 70 36-109 319-388 (499)
218 PRK07431 aspartate kinase; Pro 69.1 16 0.00034 38.1 7.5 64 41-117 518-584 (587)
219 PLN02696 1-deoxy-D-xylulose-5- 68.7 24 0.00052 35.7 8.3 55 128-188 57-113 (454)
220 COG4569 MhpF Acetaldehyde dehy 68.5 51 0.0011 30.1 9.4 96 127-237 3-106 (310)
221 COG2910 Putative NADH-flavin r 68.1 15 0.00032 33.0 5.9 66 129-211 1-69 (211)
222 PRK13304 L-aspartate dehydroge 67.7 20 0.00044 33.3 7.2 78 128-222 1-79 (265)
223 PF10727 Rossmann-like: Rossma 67.4 8.6 0.00019 32.0 4.1 36 125-165 7-43 (127)
224 PRK09034 aspartate kinase; Rev 67.2 45 0.00097 33.7 10.0 33 42-74 308-343 (454)
225 PRK00726 murG undecaprenyldiph 66.2 36 0.00077 32.3 8.8 97 128-231 1-119 (357)
226 PRK14664 tRNA-specific 2-thiou 66.2 19 0.00041 35.4 6.9 57 127-188 4-62 (362)
227 TIGR00656 asp_kin_monofn aspar 66.0 61 0.0013 31.8 10.6 99 42-152 260-364 (401)
228 TIGR00561 pntA NAD(P) transhyd 65.2 76 0.0016 32.7 11.2 157 53-229 94-278 (511)
229 PRK07574 formate dehydrogenase 65.0 1E+02 0.0022 30.6 11.8 156 128-313 192-360 (385)
230 COG0482 TrmU Predicted tRNA(5- 64.9 23 0.0005 34.7 7.1 57 127-188 2-70 (356)
231 COG2844 GlnD UTP:GlnB (protein 64.9 31 0.00068 37.4 8.5 38 41-78 683-720 (867)
232 TIGR02853 spore_dpaA dipicolin 64.7 53 0.0011 31.0 9.5 105 128-254 151-256 (287)
233 PRK06635 aspartate kinase; Rev 64.2 69 0.0015 31.5 10.6 34 44-77 264-298 (404)
234 PF01171 ATP_bind_3: PP-loop f 64.0 30 0.00065 30.0 7.2 58 130-188 1-65 (182)
235 PRK07431 aspartate kinase; Pro 63.7 27 0.00058 36.4 7.9 71 41-124 347-420 (587)
236 PF03054 tRNA_Me_trans: tRNA m 63.5 18 0.0004 35.4 6.2 55 129-188 1-69 (356)
237 PRK00856 pyrB aspartate carbam 63.3 45 0.00098 31.9 8.8 70 171-242 172-267 (305)
238 TIGR03759 conj_TIGR03759 integ 62.0 56 0.0012 29.4 8.4 84 101-188 73-166 (200)
239 PLN02551 aspartokinase 61.6 91 0.002 32.2 11.1 86 42-137 366-454 (521)
240 PF03807 F420_oxidored: NADP o 61.5 33 0.00072 25.9 6.3 74 130-219 1-76 (96)
241 PRK09436 thrA bifunctional asp 61.5 80 0.0017 34.5 11.2 35 42-76 315-352 (819)
242 PRK00341 hypothetical protein; 61.4 51 0.0011 25.7 7.2 69 39-112 13-84 (91)
243 PRK07200 aspartate/ornithine c 60.9 1.3E+02 0.0027 30.1 11.6 100 128-241 187-334 (395)
244 PRK10660 tilS tRNA(Ile)-lysidi 60.8 35 0.00076 34.3 7.9 61 128-188 15-82 (436)
245 PRK09181 aspartate kinase; Val 60.3 30 0.00066 35.2 7.3 65 41-116 401-467 (475)
246 PF00205 TPP_enzyme_M: Thiamin 60.1 24 0.00051 28.9 5.6 43 171-213 29-86 (137)
247 TIGR00657 asp_kinases aspartat 59.3 31 0.00067 34.5 7.2 34 42-75 378-414 (441)
248 PRK15409 bifunctional glyoxyla 59.1 1.7E+02 0.0037 28.1 12.6 158 128-314 145-313 (323)
249 PRK04998 hypothetical protein; 58.9 65 0.0014 24.8 7.4 72 39-114 12-83 (88)
250 PRK07634 pyrroline-5-carboxyla 57.5 40 0.00087 30.3 7.1 52 128-184 4-56 (245)
251 TIGR02432 lysidine_TilS_N tRNA 57.4 36 0.00078 29.4 6.5 58 130-188 1-65 (189)
252 PRK08210 aspartate kinase I; R 57.0 49 0.0011 32.6 8.1 35 42-76 271-306 (403)
253 cd01075 NAD_bind_Leu_Phe_Val_D 56.7 79 0.0017 28.1 8.7 158 128-317 28-187 (200)
254 COG0078 ArgF Ornithine carbamo 56.6 1.9E+02 0.0041 27.8 12.5 102 127-242 152-275 (310)
255 KOG2805 tRNA (5-methylaminomet 56.0 48 0.001 32.1 7.3 57 127-188 4-74 (377)
256 PRK00286 xseA exodeoxyribonucl 55.9 97 0.0021 30.9 10.1 78 79-159 86-166 (438)
257 COG1748 LYS9 Saccharopine dehy 55.9 60 0.0013 32.3 8.4 120 128-271 1-128 (389)
258 PRK06291 aspartate kinase; Pro 55.8 41 0.00089 34.0 7.4 63 42-115 398-463 (465)
259 PRK09034 aspartate kinase; Rev 55.3 44 0.00095 33.7 7.5 62 41-113 384-448 (454)
260 PRK10126 tyrosine phosphatase; 54.9 37 0.00079 28.6 5.9 79 129-213 3-84 (147)
261 PRK13581 D-3-phosphoglycerate 54.3 2.6E+02 0.0057 28.7 13.4 153 128-313 140-305 (526)
262 COG0541 Ffh Signal recognition 54.1 1E+02 0.0022 31.1 9.6 255 55-317 30-330 (451)
263 PRK13602 putative ribosomal pr 53.4 75 0.0016 24.1 6.9 28 171-203 43-70 (82)
264 cd05017 SIS_PGI_PMI_1 The memb 52.8 70 0.0015 25.6 7.1 54 128-189 43-98 (119)
265 TIGR01133 murG undecaprenyldip 52.5 78 0.0017 29.6 8.5 78 129-213 1-99 (348)
266 PLN02928 oxidoreductase family 52.0 1.6E+02 0.0034 28.6 10.5 108 197-313 219-338 (347)
267 cd05212 NAD_bind_m-THF_DH_Cycl 51.6 1.5E+02 0.0032 25.0 9.1 14 237-250 117-130 (140)
268 PRK06683 hypothetical protein; 51.6 69 0.0015 24.5 6.4 49 134-188 12-60 (82)
269 PLN02551 aspartokinase 51.4 48 0.001 34.2 7.2 62 41-113 444-507 (521)
270 PRK12723 flagellar biosynthesi 51.3 1.4E+02 0.003 29.6 10.2 140 130-275 175-333 (388)
271 COG1570 XseA Exonuclease VII, 51.0 2.8E+02 0.0061 28.1 14.0 77 79-158 86-165 (440)
272 PF01113 DapB_N: Dihydrodipico 50.6 20 0.00043 29.3 3.5 34 129-166 1-36 (124)
273 PRK13530 arsenate reductase; P 50.2 90 0.0019 25.8 7.5 77 128-212 3-82 (133)
274 PRK13365 protocatechuate 4,5-d 50.0 28 0.00061 32.8 4.9 74 197-272 39-127 (279)
275 PRK05472 redox-sensing transcr 49.9 1.3E+02 0.0028 26.7 9.1 99 127-242 83-187 (213)
276 TIGR03499 FlhF flagellar biosy 49.8 1.5E+02 0.0033 27.7 9.8 34 172-210 242-278 (282)
277 PRK14171 bifunctional 5,10-met 49.5 1.9E+02 0.0042 27.5 10.4 164 42-223 34-222 (288)
278 PF04007 DUF354: Protein of un 49.4 1.5E+02 0.0032 28.8 9.9 78 129-213 1-92 (335)
279 PRK14665 mnmA tRNA-specific 2- 49.4 73 0.0016 31.2 7.8 57 127-188 4-67 (360)
280 PLN03139 formate dehydrogenase 49.3 2.8E+02 0.006 27.5 12.2 159 128-314 199-368 (386)
281 COG2243 CobF Precorrin-2 methy 49.3 1.3E+02 0.0029 27.7 9.0 111 88-215 58-177 (234)
282 PF07485 DUF1529: Domain of Un 48.9 34 0.00075 28.3 4.6 89 13-108 17-118 (123)
283 PRK14561 hypothetical protein; 48.7 42 0.0009 29.7 5.5 54 129-188 1-57 (194)
284 COG3007 Uncharacterized paraqu 48.5 1.3E+02 0.0029 29.0 8.9 87 122-211 35-138 (398)
285 PRK13302 putative L-aspartate 48.1 96 0.0021 29.0 8.1 73 127-215 5-78 (271)
286 cd04516 TBP_eukaryotes eukaryo 47.8 70 0.0015 28.0 6.7 124 3-138 18-148 (174)
287 PF04359 DUF493: Protein of un 47.5 44 0.00096 25.4 4.8 72 39-114 7-80 (85)
288 PF00670 AdoHcyase_NAD: S-aden 47.0 82 0.0018 27.4 6.9 84 129-235 24-110 (162)
289 TIGR00237 xseA exodeoxyribonuc 46.9 1.9E+02 0.004 29.1 10.4 78 79-159 80-160 (432)
290 cd01965 Nitrogenase_MoFe_beta_ 46.7 2.4E+02 0.0052 28.0 11.2 146 96-252 254-425 (428)
291 PRK02910 light-independent pro 46.7 2E+02 0.0043 29.6 10.8 197 41-250 157-415 (519)
292 COG1921 SelA Selenocysteine sy 46.6 99 0.0021 30.8 8.1 81 130-212 134-221 (395)
293 PRK12446 undecaprenyldiphospho 46.2 1.1E+02 0.0023 29.6 8.4 90 129-225 2-112 (352)
294 PRK13600 putative ribosomal pr 45.9 41 0.00089 26.0 4.3 46 142-189 18-63 (84)
295 PRK00143 mnmA tRNA-specific 2- 45.9 76 0.0016 30.8 7.3 55 129-188 1-70 (346)
296 PRK14191 bifunctional 5,10-met 45.9 1.8E+02 0.004 27.6 9.6 76 141-222 143-219 (285)
297 cd01992 PP-ATPase N-terminal d 45.4 83 0.0018 26.8 6.8 57 130-187 1-64 (185)
298 PRK03868 glucose-6-phosphate i 45.3 85 0.0018 31.4 7.6 58 128-189 111-174 (410)
299 COG0245 IspF 2C-methyl-D-eryth 45.1 54 0.0012 28.4 5.3 79 46-139 67-145 (159)
300 cd01993 Alpha_ANH_like_II This 45.1 1E+02 0.0022 26.1 7.3 59 130-188 1-67 (185)
301 PHA00771 head assembly protein 45.0 32 0.00069 28.8 3.7 49 229-277 62-114 (151)
302 PF01262 AlaDh_PNT_C: Alanine 44.6 1E+02 0.0022 26.3 7.2 96 123-229 15-133 (168)
303 PRK04148 hypothetical protein; 44.5 1.9E+02 0.0041 24.3 8.7 50 128-188 17-66 (134)
304 PLN00062 TATA-box-binding prot 44.4 63 0.0014 28.5 5.9 124 3-138 18-148 (179)
305 COG4693 PchG Oxidoreductase (N 43.7 39 0.00085 32.3 4.6 54 128-188 4-57 (361)
306 TIGR01284 alt_nitrog_alph nitr 43.5 1.8E+02 0.0039 29.4 9.8 196 41-251 198-441 (457)
307 TIGR01425 SRP54_euk signal rec 42.9 1.3E+02 0.0029 30.2 8.6 214 55-275 30-260 (429)
308 COG0120 RpiA Ribose 5-phosphat 42.6 36 0.00077 31.3 4.1 149 133-296 23-196 (227)
309 PF10087 DUF2325: Uncharacteri 42.6 97 0.0021 23.9 6.2 42 170-211 12-55 (97)
310 PF10686 DUF2493: Protein of u 42.5 59 0.0013 24.1 4.6 58 128-188 3-64 (71)
311 PF02670 DXP_reductoisom: 1-de 42.5 1.8E+02 0.0039 24.3 8.0 110 131-254 1-115 (129)
312 PF14085 DUF4265: Domain of un 42.5 1.4E+02 0.0031 24.2 7.4 59 42-111 52-111 (117)
313 PRK15469 ghrA bifunctional gly 42.4 1.6E+02 0.0034 28.2 8.8 155 128-314 136-301 (312)
314 COG0527 LysC Aspartokinases [A 42.2 94 0.002 31.5 7.5 35 41-75 382-419 (447)
315 PRK09424 pntA NAD(P) transhydr 42.2 4E+02 0.0087 27.5 12.1 152 57-228 99-278 (509)
316 PF01890 CbiG_C: Cobalamin syn 42.1 1E+02 0.0022 25.2 6.4 33 156-188 33-65 (121)
317 PRK05948 precorrin-2 methyltra 42.1 1.7E+02 0.0036 26.9 8.6 110 88-214 61-180 (238)
318 cd07364 PCA_45_Dioxygenase_B S 42.1 37 0.00081 32.0 4.3 75 197-272 39-127 (277)
319 PF09419 PGP_phosphatase: Mito 41.5 1.5E+02 0.0032 25.9 7.6 77 141-220 63-150 (168)
320 PRK10867 signal recognition pa 41.5 3.7E+02 0.008 27.1 11.5 209 55-274 30-260 (433)
321 PRK00771 signal recognition pa 41.2 2.7E+02 0.0059 28.1 10.6 152 55-214 26-185 (437)
322 PRK13820 argininosuccinate syn 41.0 95 0.0021 30.9 7.2 57 128-188 2-63 (394)
323 cd04911 ACT_AKiii-YclM-BS_1 AC 40.9 1E+02 0.0022 23.3 5.8 60 50-117 12-71 (76)
324 PRK12724 flagellar biosynthesi 40.8 1.8E+02 0.004 29.3 9.1 249 46-310 147-424 (432)
325 PTZ00345 glycerol-3-phosphate 40.8 81 0.0018 31.0 6.6 109 127-239 10-135 (365)
326 TIGR03693 ocin_ThiF_like putat 40.7 1.2E+02 0.0026 32.0 8.1 78 127-213 128-213 (637)
327 TIGR01861 ANFD nitrogenase iro 40.6 1.1E+02 0.0024 31.5 7.8 191 42-246 202-439 (513)
328 TIGR00420 trmU tRNA (5-methyla 40.4 59 0.0013 31.7 5.6 55 129-188 1-70 (352)
329 PRK13243 glyoxylate reductase; 40.3 3.4E+02 0.0075 26.0 13.9 153 128-314 150-316 (333)
330 PRK11889 flhF flagellar biosyn 40.2 2.4E+02 0.0052 28.5 9.7 139 128-275 241-398 (436)
331 PRK01018 50S ribosomal protein 40.1 41 0.0009 26.5 3.7 29 171-203 48-76 (99)
332 TIGR00657 asp_kinases aspartat 39.8 3.9E+02 0.0085 26.6 11.8 36 41-76 301-338 (441)
333 cd00652 TBP_TLF TATA box bindi 39.8 1.1E+02 0.0023 26.9 6.6 125 3-138 18-149 (174)
334 TIGR01327 PGDH D-3-phosphoglyc 39.6 4.4E+02 0.0096 27.1 13.0 156 128-313 138-304 (525)
335 PF04592 SelP_N: Selenoprotein 39.5 1E+02 0.0022 28.5 6.5 68 143-216 49-122 (238)
336 TIGR03022 WbaP_sugtrans Undeca 39.2 2.7E+02 0.0059 27.7 10.3 109 128-238 125-252 (456)
337 cd01976 Nitrogenase_MoFe_alpha 39.1 4E+02 0.0087 26.5 11.5 194 42-250 172-415 (421)
338 PRK14169 bifunctional 5,10-met 39.0 2.6E+02 0.0057 26.5 9.5 77 141-223 142-219 (282)
339 PRK14190 bifunctional 5,10-met 38.8 3.1E+02 0.0067 26.1 9.9 77 141-223 144-221 (284)
340 PRK00973 glucose-6-phosphate i 38.7 70 0.0015 32.4 5.9 56 130-189 134-197 (446)
341 KOG4120 G/T mismatch-specific 38.6 33 0.00071 33.1 3.3 92 216-311 140-240 (426)
342 PRK14187 bifunctional 5,10-met 38.5 2.2E+02 0.0049 27.2 9.0 77 141-223 146-223 (294)
343 PRK13366 protocatechuate 4,5-d 38.4 45 0.00097 31.6 4.3 75 197-272 39-127 (284)
344 PRK13601 putative L7Ae-like ri 38.3 53 0.0012 25.1 3.9 58 134-202 9-66 (82)
345 PRK06487 glycerate dehydrogena 38.2 3.5E+02 0.0076 25.8 10.5 109 198-313 191-311 (317)
346 PF02826 2-Hacid_dh_C: D-isome 38.2 97 0.0021 26.7 6.1 106 128-261 36-151 (178)
347 COG0528 PyrH Uridylate kinase 37.9 51 0.0011 30.5 4.4 16 173-188 201-216 (238)
348 PRK09536 btuD corrinoid ABC tr 37.9 2.9E+02 0.0062 27.5 10.1 74 136-215 273-349 (402)
349 PRK11391 etp phosphotyrosine-p 37.9 74 0.0016 26.7 5.2 78 129-213 3-84 (144)
350 TIGR00268 conserved hypothetic 37.8 1E+02 0.0022 28.4 6.5 55 129-188 13-72 (252)
351 COG0499 SAM1 S-adenosylhomocys 37.5 1E+02 0.0023 30.5 6.6 34 155-188 69-102 (420)
352 TIGR00518 alaDH alanine dehydr 37.4 2E+02 0.0044 28.1 8.8 88 127-228 166-260 (370)
353 PRK14194 bifunctional 5,10-met 37.4 2.4E+02 0.0051 27.1 9.0 75 141-221 145-220 (301)
354 TIGR02689 ars_reduc_gluta arse 37.4 68 0.0015 26.1 4.8 76 129-212 1-79 (126)
355 PRK10124 putative UDP-glucose 37.4 3.2E+02 0.007 27.6 10.5 111 128-240 143-268 (463)
356 COG0527 LysC Aspartokinases [A 37.4 2.2E+02 0.0049 28.8 9.3 38 40-77 305-345 (447)
357 PRK00048 dihydrodipicolinate r 37.3 1.1E+02 0.0024 28.2 6.6 43 171-214 74-118 (257)
358 PRK11579 putative oxidoreducta 37.2 1.5E+02 0.0032 28.4 7.8 34 127-164 3-38 (346)
359 PRK05395 3-dehydroquinate dehy 36.8 1.8E+02 0.004 24.9 7.3 99 96-214 25-128 (146)
360 PRK00994 F420-dependent methyl 36.8 2.8E+02 0.006 25.9 8.8 33 156-188 61-94 (277)
361 PRK09977 putative Mg(2+) trans 36.7 2.4E+02 0.0051 25.7 8.5 62 42-108 144-205 (215)
362 cd01994 Alpha_ANH_like_IV This 36.7 1.8E+02 0.004 25.7 7.7 102 105-221 49-154 (194)
363 CHL00123 rps6 ribosomal protei 36.6 1.5E+02 0.0033 23.2 6.5 60 52-121 23-91 (97)
364 PRK07027 cobalamin biosynthesi 36.5 87 0.0019 25.8 5.2 33 156-188 35-67 (126)
365 PRK14189 bifunctional 5,10-met 36.4 3.2E+02 0.0069 26.0 9.6 76 142-223 145-221 (285)
366 TIGR00511 ribulose_e2b2 ribose 36.2 2.3E+02 0.0051 26.9 8.8 71 132-210 118-189 (301)
367 cd04518 TBP_archaea archaeal T 36.0 1E+02 0.0022 27.0 5.8 123 4-138 19-148 (174)
368 PRK14177 bifunctional 5,10-met 36.0 2.8E+02 0.0061 26.4 9.2 86 142-236 146-232 (284)
369 cd04907 ACT_ThrD-I_2 Second of 36.0 1.9E+02 0.0041 21.8 7.9 63 43-109 2-64 (81)
370 COG0552 FtsY Signal recognitio 35.8 2.7E+02 0.0058 27.2 9.1 132 140-275 154-305 (340)
371 TIGR00243 Dxr 1-deoxy-D-xylulo 35.7 2.9E+02 0.0063 27.5 9.5 129 129-276 2-137 (389)
372 PRK05703 flhF flagellar biosyn 35.5 2.4E+02 0.0052 28.3 9.1 98 172-275 269-378 (424)
373 PTZ00106 60S ribosomal protein 35.3 1.5E+02 0.0032 23.9 6.3 58 134-203 26-85 (108)
374 TIGR01282 nifD nitrogenase mol 35.2 2.6E+02 0.0056 28.4 9.4 198 42-253 207-453 (466)
375 PF02353 CMAS: Mycolic acid cy 35.0 2.2E+02 0.0048 26.6 8.4 114 97-235 41-167 (273)
376 PRK09084 aspartate kinase III; 34.9 1.9E+02 0.0041 29.2 8.4 34 42-75 306-342 (448)
377 PRK14430 acylphosphatase; Prov 34.3 1.5E+02 0.0033 23.0 6.0 59 102-164 19-77 (92)
378 PRK14172 bifunctional 5,10-met 34.1 2.9E+02 0.0063 26.1 9.0 164 42-223 34-221 (278)
379 TIGR01269 Tyr_3_monoox tyrosin 33.8 2.1E+02 0.0046 29.0 8.2 65 41-108 38-106 (457)
380 PRK14178 bifunctional 5,10-met 33.8 4.2E+02 0.0091 25.1 11.4 76 141-222 138-214 (279)
381 PRK10206 putative oxidoreducta 33.6 1.1E+02 0.0023 29.6 6.1 70 128-213 1-73 (344)
382 PF00708 Acylphosphatase: Acyl 33.6 1.5E+02 0.0033 22.6 5.9 59 101-163 18-76 (91)
383 PF14257 DUF4349: Domain of un 33.6 1.6E+02 0.0034 27.2 7.1 67 42-110 51-118 (262)
384 PRK13015 3-dehydroquinate dehy 33.6 2.1E+02 0.0047 24.4 7.2 74 96-188 25-100 (146)
385 PF02254 TrkA_N: TrkA-N domain 33.6 2.3E+02 0.0049 22.0 7.6 66 135-212 3-70 (116)
386 PF01488 Shikimate_DH: Shikima 33.4 92 0.002 25.6 5.0 85 128-226 12-99 (135)
387 COG2179 Predicted hydrolase of 33.2 1.6E+02 0.0035 25.9 6.5 69 141-218 50-122 (175)
388 COG0603 Predicted PP-loop supe 33.0 1.7E+02 0.0036 26.9 6.9 55 128-188 2-62 (222)
389 PRK14183 bifunctional 5,10-met 33.0 4.2E+02 0.0092 25.1 9.8 76 142-223 144-220 (281)
390 PF02423 OCD_Mu_crystall: Orni 32.7 93 0.002 29.7 5.5 102 128-245 128-235 (313)
391 smart00226 LMWPc Low molecular 32.7 1.4E+02 0.0031 24.4 6.0 76 133-214 2-81 (140)
392 PRK14179 bifunctional 5,10-met 32.6 3.5E+02 0.0075 25.7 9.2 74 142-221 145-219 (284)
393 PRK13978 ribose-5-phosphate is 32.5 70 0.0015 29.4 4.4 47 134-188 25-75 (228)
394 TIGR00661 MJ1255 conserved hyp 32.4 4.2E+02 0.0092 24.8 10.1 41 200-242 87-129 (321)
395 PRK12439 NAD(P)H-dependent gly 32.3 70 0.0015 30.8 4.7 23 125-147 4-27 (341)
396 TIGR00166 S6 ribosomal protein 32.3 1.8E+02 0.0039 22.3 6.2 59 53-121 18-85 (93)
397 COG0707 MurG UDP-N-acetylgluco 32.2 2.5E+02 0.0055 27.4 8.5 101 129-235 1-122 (357)
398 PF00585 Thr_dehydrat_C: C-ter 32.2 61 0.0013 25.1 3.4 68 39-109 7-74 (91)
399 PRK14431 acylphosphatase; Prov 32.1 1.7E+02 0.0036 22.6 5.9 58 102-164 17-75 (89)
400 COG0240 GpsA Glycerol-3-phosph 31.9 1.5E+02 0.0033 28.8 6.8 81 128-219 1-86 (329)
401 PF01408 GFO_IDH_MocA: Oxidore 31.9 63 0.0014 25.3 3.7 64 142-213 54-120 (120)
402 TIGR03590 PseG pseudaminic aci 31.7 2.6E+02 0.0056 26.0 8.3 79 128-213 170-250 (279)
403 KOG3075 Ribose 5-phosphate iso 31.6 92 0.002 29.1 5.0 136 130-276 44-201 (261)
404 PRK14173 bifunctional 5,10-met 31.4 3.9E+02 0.0084 25.4 9.3 86 141-235 141-227 (287)
405 PRK14186 bifunctional 5,10-met 31.4 4E+02 0.0086 25.5 9.4 77 141-223 144-221 (297)
406 COG3977 Alanine-alpha-ketoisov 31.2 1.3E+02 0.0029 29.2 6.1 120 172-298 203-363 (417)
407 PRK14176 bifunctional 5,10-met 31.2 4.3E+02 0.0093 25.2 9.6 77 141-223 150-227 (287)
408 COG0673 MviM Predicted dehydro 31.0 1.2E+02 0.0026 28.5 6.0 65 156-223 68-135 (342)
409 COG2344 AT-rich DNA-binding pr 30.8 2.3E+02 0.005 25.6 7.1 114 93-237 62-182 (211)
410 COG1419 FlhF Flagellar GTP-bin 30.8 3.1E+02 0.0067 27.5 8.8 79 128-214 202-291 (407)
411 PRK00045 hemA glutamyl-tRNA re 30.5 2.8E+02 0.006 27.6 8.7 80 128-224 182-264 (423)
412 PF13407 Peripla_BP_4: Peripla 30.5 2.9E+02 0.0062 24.4 8.2 74 99-189 13-88 (257)
413 TIGR03679 arCOG00187 arCOG0018 30.4 3.8E+02 0.0083 24.0 8.9 17 172-188 47-63 (218)
414 COG1454 EutG Alcohol dehydroge 30.4 3.1E+02 0.0067 27.2 8.8 83 131-218 9-100 (377)
415 PLN02256 arogenate dehydrogena 30.4 1.6E+02 0.0035 28.0 6.7 46 127-184 35-81 (304)
416 PRK15454 ethanol dehydrogenase 30.3 2.2E+02 0.0047 28.1 7.9 85 129-219 28-121 (395)
417 cd03466 Nitrogenase_NifN_2 Nit 30.3 2.4E+02 0.0051 28.1 8.2 126 96-232 255-396 (429)
418 PRK02842 light-independent pro 30.2 3.6E+02 0.0078 26.8 9.5 190 42-247 166-402 (427)
419 cd01981 Pchlide_reductase_B Pc 30.2 5.5E+02 0.012 25.4 11.2 199 41-252 161-425 (430)
420 TIGR01088 aroQ 3-dehydroquinat 30.2 2.7E+02 0.0059 23.7 7.2 99 96-214 23-126 (141)
421 PRK14449 acylphosphatase; Prov 30.1 2.3E+02 0.0051 21.7 6.5 59 101-163 17-75 (90)
422 PF10741 T2SM_b: Type II secre 30.1 2.8E+02 0.006 21.9 7.8 54 54-110 17-71 (110)
423 PRK14166 bifunctional 5,10-met 30.0 4.5E+02 0.0098 24.9 9.5 77 141-223 143-220 (282)
424 PRK00124 hypothetical protein; 30.0 3.6E+02 0.0078 23.2 8.6 85 86-186 1-91 (151)
425 PRK06407 ornithine cyclodeamin 30.0 2.2E+02 0.0048 27.0 7.6 136 79-245 83-223 (301)
426 PLN02712 arogenate dehydrogena 29.9 1.3E+02 0.0028 32.1 6.5 48 125-184 49-97 (667)
427 PF13167 GTP-bdg_N: GTP-bindin 29.9 2.4E+02 0.0052 22.2 6.5 78 97-185 4-84 (95)
428 PF01250 Ribosomal_S6: Ribosom 29.8 1.7E+02 0.0036 22.3 5.6 53 52-107 18-79 (92)
429 PRK00453 rpsF 30S ribosomal pr 29.8 2E+02 0.0043 22.8 6.2 60 52-121 19-87 (108)
430 PRK12727 flagellar biosynthesi 29.8 3.8E+02 0.0083 28.0 9.6 137 128-275 350-505 (559)
431 PRK08286 cbiC cobalt-precorrin 29.3 1.3E+02 0.0027 27.5 5.4 128 52-191 59-194 (214)
432 PRK14974 cell division protein 29.2 4.4E+02 0.0095 25.6 9.6 222 47-275 58-300 (336)
433 cd00466 DHQase_II Dehydroquina 29.1 2.8E+02 0.006 23.6 7.1 99 96-214 23-126 (140)
434 KOG0781 Signal recognition par 29.1 3.2E+02 0.007 28.2 8.6 66 99-166 346-417 (587)
435 PF02570 CbiC: Precorrin-8X me 29.0 65 0.0014 29.0 3.5 124 53-188 47-177 (198)
436 PF04273 DUF442: Putative phos 29.0 2.3E+02 0.0049 22.8 6.4 30 159-188 29-64 (110)
437 cd01998 tRNA_Me_trans tRNA met 28.9 1.1E+02 0.0023 29.8 5.3 54 130-188 1-67 (349)
438 PRK14170 bifunctional 5,10-met 28.9 5.1E+02 0.011 24.6 10.0 77 141-223 143-220 (284)
439 TIGR00959 ffh signal recogniti 28.7 6.1E+02 0.013 25.5 11.2 210 55-273 29-258 (428)
440 PF01976 DUF116: Protein of un 28.7 1.2E+02 0.0025 26.2 4.9 121 97-235 14-142 (158)
441 PRK14433 acylphosphatase; Prov 28.6 1.7E+02 0.0037 22.4 5.4 60 101-164 15-74 (87)
442 PF11039 DUF2824: Protein of u 28.6 63 0.0014 27.3 3.1 52 226-277 59-114 (151)
443 TIGR02992 ectoine_eutC ectoine 28.4 3.2E+02 0.007 26.1 8.5 99 128-245 129-235 (326)
444 TIGR00512 salvage_mtnA S-methy 28.4 2E+02 0.0044 27.9 7.0 72 130-211 147-232 (331)
445 PRK00536 speE spermidine synth 28.4 87 0.0019 29.4 4.4 96 127-240 72-176 (262)
446 KOG1905 Class IV sirtuins (SIR 28.4 20 0.00043 34.3 0.1 59 196-270 46-105 (353)
447 PRK08335 translation initiatio 28.2 3.6E+02 0.0078 25.5 8.5 71 133-211 113-184 (275)
448 PRK06823 ornithine cyclodeamin 28.1 4.1E+02 0.0089 25.4 9.1 102 128-245 128-233 (315)
449 COG2921 Uncharacterized conser 28.1 2.7E+02 0.0059 21.8 6.3 70 39-111 12-82 (90)
450 PF05088 Bac_GDH: Bacterial NA 28.1 1.7E+02 0.0036 34.4 7.3 38 39-76 14-51 (1528)
451 PRK14423 acylphosphatase; Prov 27.9 2.2E+02 0.0047 22.0 5.9 59 101-163 19-77 (92)
452 PRK07714 hypothetical protein; 27.8 2.6E+02 0.0057 21.8 6.5 28 171-203 50-77 (100)
453 cd01076 NAD_bind_1_Glu_DH NAD( 27.7 2.3E+02 0.0049 25.8 6.9 168 128-314 31-211 (227)
454 PF02441 Flavoprotein: Flavopr 27.6 90 0.0019 25.4 3.9 35 129-165 1-37 (129)
455 COG0313 Predicted methyltransf 27.6 3E+02 0.0066 26.1 7.8 51 134-188 55-113 (275)
456 COG3453 Uncharacterized protei 27.6 1.5E+02 0.0032 24.8 5.0 30 159-188 30-65 (130)
457 KOG0780 Signal recognition par 27.6 6.6E+02 0.014 25.4 17.7 250 55-318 31-331 (483)
458 PRK14429 acylphosphatase; Prov 27.5 2.5E+02 0.0053 21.6 6.2 59 101-163 16-74 (90)
459 PF04705 TSNR_N: Thiostrepton- 27.5 1.1E+02 0.0024 24.6 4.1 61 142-212 37-101 (115)
460 cd05565 PTS_IIB_lactose PTS_II 27.5 1.2E+02 0.0025 24.1 4.3 49 173-225 20-68 (99)
461 COG0569 TrkA K+ transport syst 27.5 1.8E+02 0.0038 26.4 6.2 70 129-212 1-74 (225)
462 PF00534 Glycos_transf_1: Glyc 27.4 1.3E+02 0.0028 24.8 5.0 69 158-230 48-118 (172)
463 PRK10799 metal-binding protein 27.4 4.8E+02 0.01 23.8 11.1 131 41-188 57-214 (247)
464 COG1778 Low specificity phosph 27.3 1.2E+02 0.0027 26.4 4.7 45 134-188 36-80 (170)
465 PRK05583 ribosomal protein L7A 27.1 3.2E+02 0.007 21.7 7.5 65 134-211 18-84 (104)
466 COG1493 HprK Serine kinase of 27.0 97 0.0021 29.8 4.4 58 127-188 47-112 (308)
467 cd01814 NTGP5 Ubiquitin-like N 27.0 23 0.00049 29.0 0.2 54 262-323 9-68 (113)
468 PLN02477 glutamate dehydrogena 27.0 2.5E+02 0.0055 28.1 7.6 166 128-312 206-384 (410)
469 COG0027 PurT Formate-dependent 26.9 3.2E+02 0.0069 26.8 7.8 45 127-180 11-56 (394)
470 COG4080 SpoU rRNA Methylase fa 26.9 1.1E+02 0.0025 25.9 4.3 33 172-212 47-81 (147)
471 PRK13403 ketol-acid reductoiso 26.9 2.2E+02 0.0047 27.8 6.9 20 128-147 16-36 (335)
472 PRK04175 rpl7ae 50S ribosomal 26.6 3.6E+02 0.0078 22.1 7.4 28 171-203 63-90 (122)
473 PRK14441 acylphosphatase; Prov 26.6 2.5E+02 0.0054 21.8 6.1 59 101-163 19-77 (93)
474 cd03796 GT1_PIG-A_like This fa 26.1 5.5E+02 0.012 24.6 9.8 20 56-75 77-96 (398)
475 COG2085 Predicted dinucleotide 26.1 2.8E+02 0.0061 25.2 7.1 67 128-212 1-68 (211)
476 PF01210 NAD_Gly3P_dh_N: NAD-d 26.1 2.4E+02 0.0052 23.7 6.4 84 130-225 1-89 (157)
477 PRK14184 bifunctional 5,10-met 26.0 5.8E+02 0.013 24.3 10.6 76 141-222 143-223 (286)
478 PRK14193 bifunctional 5,10-met 25.9 5.8E+02 0.013 24.2 9.5 86 141-235 144-232 (284)
479 PRK14175 bifunctional 5,10-met 25.9 5.8E+02 0.013 24.2 10.2 86 142-236 145-231 (286)
480 PRK14182 bifunctional 5,10-met 25.7 5.1E+02 0.011 24.6 9.0 77 141-223 143-220 (282)
481 PRK08291 ectoine utilization p 25.7 3.3E+02 0.0071 26.1 8.0 99 128-245 132-238 (330)
482 PRK14447 acylphosphatase; Prov 25.6 2.8E+02 0.006 21.6 6.2 59 102-163 19-77 (95)
483 PRK08195 4-hyroxy-2-oxovalerat 25.5 6.2E+02 0.013 24.4 12.0 184 54-266 25-227 (337)
484 PLN02616 tetrahydrofolate dehy 25.5 6.1E+02 0.013 25.1 9.7 127 90-223 138-294 (364)
485 cd07950 Gallate_Doxase_N The N 25.5 1.1E+02 0.0025 28.7 4.7 76 197-273 39-128 (277)
486 COG1254 AcyP Acylphosphatases 25.4 3.3E+02 0.0072 21.3 6.6 59 101-163 18-76 (92)
487 PRK03659 glutathione-regulated 25.3 1.6E+02 0.0034 30.9 6.1 71 128-213 400-473 (601)
488 cd03784 GT1_Gtf_like This fami 25.2 4.3E+02 0.0094 25.2 8.9 51 129-188 1-54 (401)
489 PRK05479 ketol-acid reductoiso 25.1 2.2E+02 0.0047 27.7 6.5 17 128-144 17-34 (330)
490 TIGR01278 DPOR_BchB light-inde 25.0 4.3E+02 0.0092 27.1 9.1 199 41-252 157-419 (511)
491 PRK11880 pyrroline-5-carboxyla 24.9 1.9E+02 0.0042 26.3 6.1 17 128-144 2-19 (267)
492 PRK14422 acylphosphatase; Prov 24.8 3E+02 0.0065 21.4 6.2 60 100-163 19-78 (93)
493 cd06390 PBP1_iGluR_AMPA_GluR1 24.7 5E+02 0.011 25.1 9.2 149 41-219 54-207 (364)
494 COG1671 Uncharacterized protei 24.6 4.6E+02 0.0099 22.6 8.6 85 86-186 2-90 (150)
495 KOG2741 Dimeric dihydrodiol de 24.5 2.9E+02 0.0062 27.1 7.2 52 126-183 4-56 (351)
496 cd02004 TPP_BZL_OCoD_HPCL Thia 24.4 2.4E+02 0.0052 23.9 6.2 18 171-188 129-146 (172)
497 TIGR00064 ftsY signal recognit 24.3 5.8E+02 0.013 23.7 10.6 141 129-275 72-238 (272)
498 PF01784 NIF3: NIF3 (NGG1p int 24.3 2.4E+02 0.0052 25.7 6.5 118 54-188 75-219 (241)
499 TIGR02638 lactal_redase lactal 24.3 3.5E+02 0.0076 26.4 8.0 84 129-218 8-100 (379)
500 COG1064 AdhP Zn-dependent alco 24.2 6.8E+02 0.015 24.4 10.7 149 90-261 134-286 (339)
No 1
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=100.00 E-value=3.7e-70 Score=511.06 Aligned_cols=274 Identities=45% Similarity=0.770 Sum_probs=255.7
Q ss_pred EEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHh-hhhhhcccceeee
Q 020508 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK-LSKMFNAMRSVVR 121 (325)
Q Consensus 43 ~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~-l~~~l~~~~~~~~ 121 (325)
+++|++|+|||||||+||++|+++|+||+|++|+.+..+|.|+|++++++|+...+.++|+++|++ +++++|++ |+
T Consensus 1 ~~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~~~~~l~~~l~~~~~~~~~l~---i~ 77 (280)
T TIGR00655 1 GILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRLEESSLLAAFKSALAEKFEMT---WE 77 (280)
T ss_pred CEEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhCCE---EE
Confidence 479999999999999999999999999999999988778999999999999744789999999999 99999998 78
Q ss_pred ecCCCCCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCC-C--hhHHHH
Q 020508 122 VPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE-N--EREEEL 198 (325)
Q Consensus 122 ~~~~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~-~--~~~~~~ 198 (325)
+...++++||+||+||+||||++|++++++|+++++|++|+||+++ +..+|+++|||+++++.+. + ..++++
T Consensus 78 l~~~~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~visn~~~-----~~~~A~~~gIp~~~~~~~~~~~~~~e~~~ 152 (280)
T TIGR00655 78 LILADKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALVISNHED-----LRSLVERFGIPFHYIPATKDNRVEHEKRQ 152 (280)
T ss_pred EecCCCCcEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEEcChh-----HHHHHHHhCCCEEEcCCCCcchhhhHHHH
Confidence 8888889999999999999999999999999999999999999863 4568999999999877321 1 234578
Q ss_pred HHHhc--CCCEEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhCCcEeEEEEEEecCCCCCCCeEEE
Q 020508 199 LELVQ--NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQ 276 (325)
Q Consensus 199 ~~~l~--~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvh~v~~~~D~G~Ii~Q 276 (325)
.++|+ ++|++|++|||+||++++++.|++++||+||||||+|||++|++||+.+|++++|+|+|+|++++|+||||.|
T Consensus 153 ~~~l~~~~~Dlivlagym~il~~~~l~~~~~~iINiHpSLLP~f~G~~p~~~ai~~G~k~tG~TvH~V~e~lD~GpII~Q 232 (280)
T TIGR00655 153 LELLKQYQVDLVVLAKYMQILSPDFVKRYPNKIINIHHSFLPAFIGANPYQRAYERGVKIIGATAHYVTEELDEGPIIEQ 232 (280)
T ss_pred HHHHHHhCCCEEEEeCchhhCCHHHHhhccCCEEEecCCcCCCCCCcCHHHHHHHcCCCeEEEEEEEEcCCCcCCCeEEE
Confidence 88886 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCceeeecCCceeeC
Q 020508 277 MVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF 325 (325)
Q Consensus 277 ~~~~I~~~dt~~~l~~r~~~~~~~ll~~al~~i~~g~~~~~~~~~~~~~ 325 (325)
+.++|.++||.++|.+|+++.|+++++++++.++++++...+ +|||||
T Consensus 233 ~~v~I~~~dt~~~L~~ri~~~E~~~~~~ai~~~~~~~~~~~~-~~~~vf 280 (280)
T TIGR00655 233 DVVRVDHTDNVEDLIRAGRDIEKVVLARAVKLHLEDRVFVYE-NKTVVF 280 (280)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeEEcC-CeeEEC
Confidence 999999999999999999999999999999999999999885 999998
No 2
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=100.00 E-value=4.3e-69 Score=505.69 Aligned_cols=277 Identities=38% Similarity=0.646 Sum_probs=255.2
Q ss_pred CcceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEE--eCCCCCChHHHHHHHHhhhhhhccc
Q 020508 39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI--FDPIKWPREQMDEDFFKLSKMFNAM 116 (325)
Q Consensus 39 ~~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~--~p~~~~~~~~L~~~l~~l~~~l~~~ 116 (325)
...++++|++|+|||||||+||++|+++|+||+|++|+.+...+.|+|++++. .|. +.+.++|+++|+++++++|++
T Consensus 6 ~m~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~-~~~~~~l~~~l~~l~~~l~l~ 84 (289)
T PRK13010 6 RSPSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAE-AASVDTFRQEFQPVAEKFDMQ 84 (289)
T ss_pred cccCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCC-CCCHHHHHHHHHHHHHHhCCe
Confidence 45689999999999999999999999999999999998656678999998887 456 678999999999999999998
Q ss_pred ceeeeecCCCCCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEec-CCCC--h
Q 020508 117 RSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKEN--E 193 (325)
Q Consensus 117 ~~~~~~~~~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~-~~~~--~ 193 (325)
|++...++++||+||+||+||||++|++++++|+++++|++|+||++ .+.++|+++|||+++++ +..+ .
T Consensus 85 ---~~i~~~~~~~kiavl~Sg~g~nl~al~~~~~~~~l~~~i~~visn~~-----~~~~~A~~~gIp~~~~~~~~~~~~~ 156 (289)
T PRK13010 85 ---WAIHPDGQRPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGIISNHP-----DLQPLAVQHDIPFHHLPVTPDTKAQ 156 (289)
T ss_pred ---EEEecCCCCeEEEEEEeCCCccHHHHHHHHHCCCCCcEEEEEEECCh-----hHHHHHHHcCCCEEEeCCCcccccc
Confidence 66666677899999999999999999999999999999999999985 35799999999999887 2222 2
Q ss_pred hHHHHHHHhc--CCCEEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhCCcEeEEEEEEecCCCCCC
Q 020508 194 REEELLELVQ--NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAG 271 (325)
Q Consensus 194 ~~~~~~~~l~--~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvh~v~~~~D~G 271 (325)
.+.++.++|+ ++|++|++|||+||++++++.|++++||+||||||+|||++|++||+.+|++.+|+|+|+|++++|+|
T Consensus 157 ~~~~~~~~l~~~~~Dlivlagym~il~~~~l~~~~~~iiNiHpSlLP~f~G~~~~~~ai~~G~k~tG~TvH~v~~~lD~G 236 (289)
T PRK13010 157 QEAQILDLIETSGAELVVLARYMQVLSDDLSRKLSGRAINIHHSFLPGFKGARPYHQAHARGVKLIGATAHFVTDDLDEG 236 (289)
T ss_pred hHHHHHHHHHHhCCCEEEEehhhhhCCHHHHhhccCCceeeCcccCCCCCCCCHHHHHHHcCCCeEEEEEEEEcCCCCCC
Confidence 3457788887 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCceeeecCCceeeC
Q 020508 272 PIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF 325 (325)
Q Consensus 272 ~Ii~Q~~~~I~~~dt~~~l~~r~~~~~~~ll~~al~~i~~g~~~~~~~~~~~~~ 325 (325)
|||+|+.++|.++||.++|.+|..++|++++++++++++++++..++ +|||||
T Consensus 237 pII~Q~~v~V~~~dt~e~L~~r~~~~E~~~l~~ai~~~~~~~~~~~~-~~~~vf 289 (289)
T PRK13010 237 PIIEQDVERVDHSYSPEDLVAKGRDVECLTLARAVKAFIEHRVFING-DRTVVF 289 (289)
T ss_pred CceEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCEEEeC-CEEEEC
Confidence 99999999999999999999999999999999999999999999875 999998
No 3
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=100.00 E-value=1.9e-68 Score=501.21 Aligned_cols=277 Identities=39% Similarity=0.652 Sum_probs=256.0
Q ss_pred CcceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcccce
Q 020508 39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS 118 (325)
Q Consensus 39 ~~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~~ 118 (325)
...++++|++|+||||||++||++|+++|+||++++|++..+.++|+|++++++|+ +.+.++|+++|+++|++++++
T Consensus 4 ~m~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~-~~~~~~L~~~L~~l~~~l~l~-- 80 (286)
T PRK13011 4 RPDTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEE-GLDEDALRAGFAPIAARFGMQ-- 80 (286)
T ss_pred CCceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCC-CCCHHHHHHHHHHHHHHhCcE--
Confidence 44589999999999999999999999999999999999777889999999999998 788999999999999999998
Q ss_pred eeeecCCCCCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecC-CCC--hhH
Q 020508 119 VVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA-KEN--ERE 195 (325)
Q Consensus 119 ~~~~~~~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~-~~~--~~~ 195 (325)
|.+...++++||+||+||+|+||++|++++++|+++++|++|+||++ .+..+|+++|||++.++. ..+ ..+
T Consensus 81 -i~i~~~~~~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~visn~~-----~~~~lA~~~gIp~~~~~~~~~~~~~~~ 154 (286)
T PRK13011 81 -WELHDPAARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVSNHP-----DLEPLAAWHGIPFHHFPITPDTKPQQE 154 (286)
T ss_pred -EEEeecccCceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEEEECCc-----cHHHHHHHhCCCEEEeCCCcCchhhhH
Confidence 56666667899999999999999999999999999999999999985 356779999999998762 211 124
Q ss_pred HHHHHHhc--CCCEEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhCCcEeEEEEEEecCCCCCCCe
Q 020508 196 EELLELVQ--NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPI 273 (325)
Q Consensus 196 ~~~~~~l~--~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvh~v~~~~D~G~I 273 (325)
.++.++|+ ++|++|++|||+||++++++.|++++||+||||||+|||++|++||+.+|++++|+|+|+|++++|+|||
T Consensus 155 ~~~~~~l~~~~~Dlivlagy~~il~~~~l~~~~~~iiNiHpSLLP~~rG~~~~~~ai~~G~~~tG~TvH~v~~~~D~G~I 234 (286)
T PRK13011 155 AQVLDVVEESGAELVVLARYMQVLSPELCRKLAGRAINIHHSFLPGFKGAKPYHQAYERGVKLIGATAHYVTDDLDEGPI 234 (286)
T ss_pred HHHHHHHHHhCcCEEEEeChhhhCCHHHHhhccCCeEEeccccCCCCCCCcHHHHHHHCCCCeEEEEEEEEcCCCcCCCc
Confidence 46777776 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCceeeecCCceeeC
Q 020508 274 IEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF 325 (325)
Q Consensus 274 i~Q~~~~I~~~dt~~~l~~r~~~~~~~ll~~al~~i~~g~~~~~~~~~~~~~ 325 (325)
|+|++++|.++||.++|.+|++++|++++++++++++++++...+ +||+||
T Consensus 235 i~Q~~v~I~~~dt~~~L~~r~~~~E~~~~~~ai~~~~~~~~~~~~-~~~~~~ 285 (286)
T PRK13011 235 IEQDVERVDHAYSPEDLVAKGRDVECLTLARAVKAHIERRVFLNG-NRTVVF 285 (286)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeEEcC-CEEEeC
Confidence 999999999999999999999999999999999999999998774 999998
No 4
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=100.00 E-value=7.5e-68 Score=497.66 Aligned_cols=276 Identities=48% Similarity=0.776 Sum_probs=255.8
Q ss_pred cceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEe-CCCCCChHHHHHHHHhhhhhhcccce
Q 020508 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIF-DPIKWPREQMDEDFFKLSKMFNAMRS 118 (325)
Q Consensus 40 ~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~-p~~~~~~~~L~~~l~~l~~~l~~~~~ 118 (325)
.+++++|++|+||||||++||++|+++|+||+|++++..+++|+|.|++.+++ |. +.+.++|+++|+++|++++++
T Consensus 4 ~~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~-~~~~~~L~~~L~~l~~~l~l~-- 80 (286)
T PRK06027 4 MQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGL-IFNLETLRADFAALAEEFEMD-- 80 (286)
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCC-CCCHHHHHHHHHHHHHHhCCE--
Confidence 46899999999999999999999999999999999988667889999999999 55 677999999999999999998
Q ss_pred eeeecCCCCCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCC-CC--hhH
Q 020508 119 VVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK-EN--ERE 195 (325)
Q Consensus 119 ~~~~~~~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~-~~--~~~ 195 (325)
+.+....+|+||+||+||+|+||++|++++++|+++++|++|+||++ .+..+|+++|||++.++.+ .+ ..+
T Consensus 81 -i~l~~~~~~~ri~vl~Sg~gsnl~al~~~~~~~~~~~~i~~visn~~-----~~~~lA~~~gIp~~~~~~~~~~~~~~~ 154 (286)
T PRK06027 81 -WRLLDSAERKRVVILVSKEDHCLGDLLWRWRSGELPVEIAAVISNHD-----DLRSLVERFGIPFHHVPVTKETKAEAE 154 (286)
T ss_pred -EEEcccccCcEEEEEEcCCCCCHHHHHHHHHcCCCCcEEEEEEEcCh-----hHHHHHHHhCCCEEEeccCccccchhH
Confidence 67788888999999999999999999999999999999999999985 3567799999999987632 22 234
Q ss_pred HHHHHHhc--CCCEEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhCCcEeEEEEEEecCCCCCCCe
Q 020508 196 EELLELVQ--NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPI 273 (325)
Q Consensus 196 ~~~~~~l~--~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvh~v~~~~D~G~I 273 (325)
.++.++++ ++|++|++|||+|||+++++.|++++||+||||||+|||++|++||+.+|++++|+|+|+|++++|+|||
T Consensus 155 ~~~~~~l~~~~~Dlivlagy~~il~~~~l~~~~~~iiNiHpSLLP~yrG~~~~~~ai~~G~~~tG~TiH~v~~~~D~G~I 234 (286)
T PRK06027 155 ARLLELIDEYQPDLVVLARYMQILSPDFVARFPGRIINIHHSFLPAFKGAKPYHQAYERGVKLIGATAHYVTADLDEGPI 234 (286)
T ss_pred HHHHHHHHHhCCCEEEEecchhhcCHHHHhhccCCceecCcccCCCCCCCCHHHHHHHCCCCeEEEEEEEEcCCCcCCCc
Confidence 56788787 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCceeeecCCceeeC
Q 020508 274 IEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF 325 (325)
Q Consensus 274 i~Q~~~~I~~~dt~~~l~~r~~~~~~~ll~~al~~i~~g~~~~~~~~~~~~~ 325 (325)
|+|+.+||.++||.++|.+|+.++|++++++++++++++++... ++|++||
T Consensus 235 i~Q~~v~i~~~dt~~~L~~ri~~~E~~~~~~ai~~~~~~~~~~~-~~~~~~~ 285 (286)
T PRK06027 235 IEQDVIRVDHRDTAEDLVRAGRDVEKQVLARAVRWHLEDRVLVY-GNKTVVF 285 (286)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCEEEc-CCEEEEc
Confidence 99999999999999999999999999999999999999999986 4899887
No 5
>PLN02828 formyltetrahydrofolate deformylase
Probab=100.00 E-value=1.7e-65 Score=474.47 Aligned_cols=267 Identities=83% Similarity=1.366 Sum_probs=250.4
Q ss_pred HHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcccceeeeecCCCCCceEEEEEeCC
Q 020508 59 LSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQ 138 (325)
Q Consensus 59 Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~~~~~ri~v~~Sg~ 138 (325)
||++|+++|+||++++|+.+..+|.|+|+++++.+....+.++|+++|.+++++|+++.|.|+++..++++||+||+||.
T Consensus 1 ~~~~~~~~~~ni~~~~~~~d~~~~~ff~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~riavlvSg~ 80 (268)
T PLN02828 1 LSDCIASRGGNILGVDVFVPENKNVFYSRSEFIFDPVKWPRAQMDEDFQEISKHFKALKSVVRVPGLDPKYKIAVLASKQ 80 (268)
T ss_pred CcHHHHhCCCCEeEcccccCCCCCeeEEEEEEEeCCCCCCHHHHHHHHHHHHHhcCCcceEEEEccCCCCcEEEEEEcCC
Confidence 58999999999999999998889999999999977534578999999999999999987789999999999999999999
Q ss_pred chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEec-CCCChhHHHHHHHhcCCCEEEEecccccc
Q 020508 139 EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKENEREEELLELVQNTDFLVLARYMQIL 217 (325)
Q Consensus 139 g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~-~~~~~~~~~~~~~l~~~Dliv~~g~~~il 217 (325)
||||++|++++++|+++++|++|+||+++++++++.++|+++|||+++++ +..+.+++++++.++++|++|++|||+||
T Consensus 81 g~nl~~ll~~~~~g~l~~eI~~ViSn~~~~~~a~~~~~A~~~gIP~~~~~~~~~~~~e~~~~~~l~~~DliVLAgym~IL 160 (268)
T PLN02828 81 DHCLIDLLHRWQDGRLPVDITCVISNHERGPNTHVMRFLERHGIPYHYLPTTKENKREDEILELVKGTDFLVLARYMQIL 160 (268)
T ss_pred ChhHHHHHHhhhcCCCCceEEEEEeCCCCCCCchHHHHHHHcCCCEEEeCCCCCCCHHHHHHHHHhcCCEEEEeeehHhC
Confidence 99999999999999999999999999987667899999999999999887 33445566778877789999999999999
Q ss_pred ChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhCCcEeEEEEEEecCCCCCCCeEEEEEEeCCCCCCHHHHHHHHHHH
Q 020508 218 SGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDV 297 (325)
Q Consensus 218 ~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvh~v~~~~D~G~Ii~Q~~~~I~~~dt~~~l~~r~~~~ 297 (325)
|+++++.|++++||+|||+||+|||++|++||+.+|++.+|+|+|+|++++|+||||.|+.++|.++||.++|.+|+.+.
T Consensus 161 ~~~~l~~~~~riINIHpSlLP~f~Ga~p~~~Ai~~Gvk~tG~TvH~V~~~lD~GpII~Q~~v~V~~~dt~~~L~~r~~~~ 240 (268)
T PLN02828 161 SGNFLKGYGKDIINIHHGLLPSFKGGNPSKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRSFVQKSENL 240 (268)
T ss_pred CHHHHhhccCCEEEecCccCCCCCCCcHHHHHHHcCCCeEEEEEEEEcCCCCCCCeeEEEEEecCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCceeeecCCceeeC
Q 020508 298 EKQCLAKAIKSYCELRVLPYEMNKTVVF 325 (325)
Q Consensus 298 ~~~ll~~al~~i~~g~~~~~~~~~~~~~ 325 (325)
|++++++++++++++++..+..||||||
T Consensus 241 E~~~l~~av~~~~~~~~~~~~~~~tvvf 268 (268)
T PLN02828 241 EKQCLAKAIKSYCELRVLPYGTNKTVVF 268 (268)
T ss_pred HHHHHHHHHHHHHhCCeEEcCCCcEEeC
Confidence 9999999999999999999844999998
No 6
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.6e-63 Score=450.26 Aligned_cols=279 Identities=45% Similarity=0.712 Sum_probs=263.4
Q ss_pred CCcceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcccc
Q 020508 38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR 117 (325)
Q Consensus 38 ~~~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~ 117 (325)
..++++++|+.|||++|||++||++|+++||||++.+|+.++.+|.|+|++++.....+.+.+.|+++|++++++|+++
T Consensus 3 ~~~~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~~a~~f~m~- 81 (287)
T COG0788 3 NEPDTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGGPLDREALRAAFAPLAEEFGMD- 81 (287)
T ss_pred CCccceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCCcccHHHHHHHHHHHHHhhCce-
Confidence 3457899999999999999999999999999999999998788999999999999885588999999999999999987
Q ss_pred eeeeecCCCCCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEec-CCCCh--h
Q 020508 118 SVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKENE--R 194 (325)
Q Consensus 118 ~~~~~~~~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~-~~~~~--~ 194 (325)
|++..++.++||++|+|+.+|||.+||-+++.|+|+.+|++||+|++ .+...++++|||++++| ++.++ .
T Consensus 82 --~~~~~~~~~~ri~i~VSK~~HCL~DLL~r~~~g~L~~eI~~VIsNH~-----dl~~~v~~~~IPfhhip~~~~~k~e~ 154 (287)
T COG0788 82 --WRLHDAAQRKRIAILVSKEDHCLGDLLYRWRIGELPAEIVAVISNHD-----DLRPLVERFDIPFHHIPVTKENKAEA 154 (287)
T ss_pred --eEEeccccCceEEEEEechHHHHHHHHHHHhcCCcCCceEEEEcCCH-----HHHHHHHHcCCCeeeccCCCCcchHH
Confidence 88888889999999999999999999999999999999999999997 47999999999999999 55443 3
Q ss_pred HHHHHHHhc--CCCEEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhCCcEeEEEEEEecCCCCCCC
Q 020508 195 EEELLELVQ--NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGP 272 (325)
Q Consensus 195 ~~~~~~~l~--~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvh~v~~~~D~G~ 272 (325)
++.++++++ ++|++|+|.||+||++++++++.+++||||+|+||.|.|+.|+++|..+|.+..|.|.||+++.+|.||
T Consensus 155 E~~~~~ll~~~~~DlvVLARYMqILS~d~~~~~~g~iINIHHSFLPaF~GA~PY~QA~eRGVKlIGATAHYVT~dLDeGP 234 (287)
T COG0788 155 EARLLELLEEYGADLVVLARYMQILSPDFVERFPGKIINIHHSFLPAFIGANPYHQAYERGVKLIGATAHYVTADLDEGP 234 (287)
T ss_pred HHHHHHHHHHhCCCEEeehhhHhhCCHHHHHhccCcEEEecccccccCCCCChHHHHHhcCCeEeeeeeeeccCCCCCCC
Confidence 457788886 799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCceeeecCCceeeC
Q 020508 273 IIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF 325 (325)
Q Consensus 273 Ii~Q~~~~I~~~dt~~~l~~r~~~~~~~ll~~al~~i~~g~~~~~~~~~~~~~ 325 (325)
||.|..+++++.+|++++..+.++.|...|.+|+.+..++++..++ ||||||
T Consensus 235 IIeQdv~rV~H~~s~ed~~~~GrDvE~~VLARAv~~hle~Rv~v~g-nkTVVf 286 (287)
T COG0788 235 IIEQDVIRVDHAYSVEDLVRAGRDVEKLVLARAVKAHLEDRVFVNG-NKTVVF 286 (287)
T ss_pred ceeeeeeecCccCCHHHHHHhCCcHHHHHHHHHHHHHhcceEEEeC-CeEEec
Confidence 9999999999999999999999999999999999999999999996 999998
No 7
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.5e-49 Score=345.54 Aligned_cols=192 Identities=35% Similarity=0.482 Sum_probs=179.5
Q ss_pred ceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCC-CCh---hHHHHHHHhc-
Q 020508 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK-ENE---REEELLELVQ- 203 (325)
Q Consensus 129 ~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~-~~~---~~~~~~~~l~- 203 (325)
+||+||+||+||||++|+++++.+.++++|++|++|++ ++++.++|+++|||.+.++.+ +.+ .+.++.+.|+
T Consensus 1 ~ki~VlaSG~GSNlqaiida~~~~~~~a~i~~Visd~~---~A~~lerA~~~gIpt~~~~~k~~~~r~~~d~~l~~~l~~ 77 (200)
T COG0299 1 KKIAVLASGNGSNLQAIIDAIKGGKLDAEIVAVISDKA---DAYALERAAKAGIPTVVLDRKEFPSREAFDRALVEALDE 77 (200)
T ss_pred CeEEEEEeCCcccHHHHHHHHhcCCCCcEEEEEEeCCC---CCHHHHHHHHcCCCEEEeccccCCCHHHHHHHHHHHHHh
Confidence 58999999999999999999999889999999999984 689999999999999888733 332 3567888887
Q ss_pred -CCCEEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhCCcEeEEEEEEecCCCCCCCeEEEEEEeCC
Q 020508 204 -NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVS 282 (325)
Q Consensus 204 -~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvh~v~~~~D~G~Ii~Q~~~~I~ 282 (325)
++|++|++|||+||++.|++.|+++++|+||||||.|+|.+.+..|+.+|++++|+|+|||++++|+||||.|..+||.
T Consensus 78 ~~~dlvvLAGyMrIL~~~fl~~~~grIlNIHPSLLP~f~G~h~~~~A~~aG~k~sG~TVH~V~e~vD~GpII~Q~~Vpv~ 157 (200)
T COG0299 78 YGPDLVVLAGYMRILGPEFLSRFEGRILNIHPSLLPAFPGLHAHEQALEAGVKVSGCTVHFVTEGVDTGPIIAQAAVPVL 157 (200)
T ss_pred cCCCEEEEcchHHHcCHHHHHHhhcceEecCcccccCCCCchHHHHHHHcCCCccCcEEEEEccCCCCCCeEEEEeeeec
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhCceeeecCCceee
Q 020508 283 HRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVV 324 (325)
Q Consensus 283 ~~dt~~~l~~r~~~~~~~ll~~al~~i~~g~~~~~~~~~~~~ 324 (325)
++||.++|.+|+.+.|+++++++++++++|++... +|++++
T Consensus 158 ~~Dt~etl~~RV~~~Eh~lyp~~v~~~~~g~~~~~-~~~~~~ 198 (200)
T COG0299 158 PGDTAETLEARVLEQEHRLYPLAVKLLAEGRLKIE-GGRVIL 198 (200)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhCcceec-CceEEe
Confidence 99999999999999999999999999999999986 487764
No 8
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=100.00 E-value=2.5e-46 Score=336.01 Aligned_cols=191 Identities=25% Similarity=0.443 Sum_probs=174.5
Q ss_pred eEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCC----ChhHHHHHHHhc--
Q 020508 130 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE----NEREEELLELVQ-- 203 (325)
Q Consensus 130 ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~----~~~~~~~~~~l~-- 203 (325)
||+||+||+|+||++|++++++++++++|++|+||++ ++++.++|+++|||++.++... +..++++.+.|+
T Consensus 1 ki~vl~Sg~Gsn~~al~~~~~~~~l~~~i~~visn~~---~~~~~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~ 77 (207)
T PLN02331 1 KLAVFVSGGGSNFRAIHDACLDGRVNGDVVVVVTNKP---GCGGAEYARENGIPVLVYPKTKGEPDGLSPDELVDALRGA 77 (207)
T ss_pred CEEEEEeCCChhHHHHHHHHHcCCCCeEEEEEEEeCC---CChHHHHHHHhCCCEEEeccccCCCcccchHHHHHHHHhc
Confidence 7999999999999999999999999999999999985 5788999999999999876321 123567888886
Q ss_pred CCCEEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCC----cHHHHHH-HhCCcEeEEEEEEecCCCCCCCeEEEEE
Q 020508 204 NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQAF-DAGVKLIGATSHFVTEELDAGPIIEQMV 278 (325)
Q Consensus 204 ~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~----~pi~~ai-~~G~~~~GvTvh~v~~~~D~G~Ii~Q~~ 278 (325)
++|++|++||+++||+++++.|++++||+|||+||+|||+ .|++|++ .+|++++|+|+|+|++++|+||||+|+.
T Consensus 78 ~~Dliv~agy~~il~~~~l~~~~~~~iNiHpSLLP~yrG~g~~~~~v~~a~i~~g~~~tG~Tvh~v~~~~D~G~Ii~Q~~ 157 (207)
T PLN02331 78 GVDFVLLAGYLKLIPVELVRAYPRSILNIHPALLPAFGGKGYYGIKVHKAVIASGARYSGPTVHFVDEHYDTGRILAQRV 157 (207)
T ss_pred CCCEEEEeCcchhCCHHHHhhCCCCEEEEeCccccCCCCCCcccchHHHHHHHcCCCeEEEEEEEECCCCCCCCeEEEEE
Confidence 8999999999999999999999999999999999999996 6888885 5899999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCceeeecCCceee
Q 020508 279 ERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVV 324 (325)
Q Consensus 279 ~~I~~~dt~~~l~~r~~~~~~~ll~~al~~i~~g~~~~~~~~~~~~ 324 (325)
++|.++||..+|++|+...++++++++++.+++|++..++ .+|++
T Consensus 158 ~~I~~~dt~~~L~~r~~~~e~~ll~~al~~l~~~~~~~~~-~~~~~ 202 (207)
T PLN02331 158 VPVLATDTPEELAARVLHEEHQLYVEVVAALCEERIVWRE-DGVPL 202 (207)
T ss_pred EecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEeCC-CeeEE
Confidence 9999999999999999999999999999999999988775 66654
No 9
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=100.00 E-value=8.4e-46 Score=329.08 Aligned_cols=183 Identities=32% Similarity=0.500 Sum_probs=169.7
Q ss_pred ceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEec-CCCC---hhHHHHHHHhc-
Q 020508 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKEN---EREEELLELVQ- 203 (325)
Q Consensus 129 ~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~-~~~~---~~~~~~~~~l~- 203 (325)
+|||||+||+|+|++.++++++++.++++|++|+++++ ++++.++|+++|||++.++ ...+ ..++++.++++
T Consensus 1 ~riail~sg~gs~~~~ll~~~~~~~l~~~I~~vi~~~~---~~~~~~~A~~~gip~~~~~~~~~~~~~~~~~~~~~~l~~ 77 (190)
T TIGR00639 1 KRIVVLISGNGSNLQAIIDACKEGKIPASVVLVISNKP---DAYGLERAAQAGIPTFVLSLKDFPSREAFDQAIIEELRA 77 (190)
T ss_pred CeEEEEEcCCChhHHHHHHHHHcCCCCceEEEEEECCc---cchHHHHHHHcCCCEEEECccccCchhhhhHHHHHHHHh
Confidence 58999999999999999999999998899999999985 4688999999999998765 2221 22567888886
Q ss_pred -CCCEEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhCCcEeEEEEEEecCCCCCCCeEEEEEEeCC
Q 020508 204 -NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVS 282 (325)
Q Consensus 204 -~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvh~v~~~~D~G~Ii~Q~~~~I~ 282 (325)
++|++|+++|++||++++++.++.+++|+|||+||+|||++|++|||.+|++++|+|+|+|++++|+|||+.|++++|.
T Consensus 78 ~~~D~iv~~~~~~il~~~~l~~~~~~~iNiHpslLP~yrG~~p~~~ai~~g~~~tGvTih~v~~~~D~G~Ii~q~~~~i~ 157 (190)
T TIGR00639 78 HEVDLVVLAGFMRILGPTFLSRFAGRILNIHPSLLPAFPGLHAVEQALEAGVKESGCTVHYVDEEVDTGPIIAQAKVPIL 157 (190)
T ss_pred cCCCEEEEeCcchhCCHHHHhhccCCEEEEeCCcccCCCCccHHHHHHHcCCCeEEEEEEEEcCCCcCCCEEEEEEEEcC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhCce
Q 020508 283 HRDNLRTFVQKSEDVEKQCLAKAIKSYCELRV 314 (325)
Q Consensus 283 ~~dt~~~l~~r~~~~~~~ll~~al~~i~~g~~ 314 (325)
++||..+|++|+...++++++++++.+++|++
T Consensus 158 ~~dt~~~L~~k~~~~~~~l~~~~l~~~~~g~~ 189 (190)
T TIGR00639 158 PEDTEETLEQRIHKQEHRIYPLAIAWFAQGRL 189 (190)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999999998875
No 10
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=100.00 E-value=1.5e-45 Score=329.98 Aligned_cols=188 Identities=34% Similarity=0.481 Sum_probs=173.3
Q ss_pred CceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEec-CCCC---hhHHHHHHHhc
Q 020508 128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKEN---EREEELLELVQ 203 (325)
Q Consensus 128 ~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~-~~~~---~~~~~~~~~l~ 203 (325)
++||+||+||+|+++++++++++++++.++|++|+|+++ ++.+.++|+++|||++.++ .+.+ ..++++.+.|+
T Consensus 1 m~ki~vl~sg~gs~~~~ll~~~~~~~~~~~I~~vvs~~~---~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~ 77 (200)
T PRK05647 1 MKRIVVLASGNGSNLQAIIDACAAGQLPAEIVAVISDRP---DAYGLERAEAAGIPTFVLDHKDFPSREAFDAALVEALD 77 (200)
T ss_pred CceEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEecCc---cchHHHHHHHcCCCEEEECccccCchhHhHHHHHHHHH
Confidence 479999999999999999999999888899999999975 4678999999999998765 2221 12457788786
Q ss_pred --CCCEEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhCCcEeEEEEEEecCCCCCCCeEEEEEEeC
Q 020508 204 --NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERV 281 (325)
Q Consensus 204 --~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvh~v~~~~D~G~Ii~Q~~~~I 281 (325)
++|++|+++|++|||+++++.+++++||+|||+||+|||++|++|||++|++++|+|+|+|++++|+|||+.|++++|
T Consensus 78 ~~~~D~iv~~~~~~ii~~~~l~~~~~~~iNiHpslLP~yrG~~p~~~ai~~g~~~tG~Tvh~~~~~~D~G~Ii~q~~~~i 157 (200)
T PRK05647 78 AYQPDLVVLAGFMRILGPTFVSAYEGRIINIHPSLLPSFPGLHTHEQALEAGVKVHGCTVHFVDEGLDTGPIIAQAAVPV 157 (200)
T ss_pred HhCcCEEEhHHhhhhCCHHHHhhccCCEEEEeCccccCCCCccHHHHHHHcCCCeEEEEEEEEcCCCcCCCeEEEEEEec
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCceeeec
Q 020508 282 SHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYE 318 (325)
Q Consensus 282 ~~~dt~~~l~~r~~~~~~~ll~~al~~i~~g~~~~~~ 318 (325)
.++||..+|++|+.+.+.++++++++.+.+|++.+.+
T Consensus 158 ~~~dt~~~L~~kl~~~~~~ll~~~i~~l~~g~~~~~~ 194 (200)
T PRK05647 158 LAGDTEESLAARVLEQEHRLYPLVVKWFAEGRLKLEG 194 (200)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEeeC
Confidence 9999999999999999999999999999999998764
No 11
>KOG3076 consensus 5'-phosphoribosylglycinamide formyltransferase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.3e-45 Score=314.90 Aligned_cols=194 Identities=42% Similarity=0.616 Sum_probs=180.5
Q ss_pred CCceEEEEEeCCchHHHHHHHHhhcCCC--CceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecC-CCCh---hHHHHHH
Q 020508 127 PKYKVAVLASKQEHCLVDFLYGWQEGKL--PVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA-KENE---REEELLE 200 (325)
Q Consensus 127 ~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l--~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~-~~~~---~~~~~~~ 200 (325)
++.|+++++||.|+||++|+++.++|.+ +++|+.|+||+ +++..+++|+++|||+..+|. .+.+ .+.++.+
T Consensus 5 ~r~rvavliSGtGsNlqaLid~~r~~~l~~~a~VvlviSnk---~~~~GL~rA~~~gIPt~vip~k~~a~R~~~d~eL~~ 81 (206)
T KOG3076|consen 5 RRARVAVLISGTGSNLQALIDATRDGSLGPNADVVLVISNK---KGVYGLERAADAGIPTLVIPHKRFASREKYDNELAE 81 (206)
T ss_pred cceeEEEEEecCchhHHHHHHhhcCCCcCCCceEEEEEecc---ccchhhhHHHHCCCCEEEeccccccccccCcHHHHH
Confidence 4679999999999999999999999998 79999999998 468889999999999998884 2222 2346777
Q ss_pred Hhc--CCCEEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhCCcEeEEEEEEecCCCCCCCeEEEEE
Q 020508 201 LVQ--NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMV 278 (325)
Q Consensus 201 ~l~--~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvh~v~~~~D~G~Ii~Q~~ 278 (325)
.+. ++|++|++|||+||+++|++.|+.++||+||||||.|+|.+++.+|+..|.+.+|+|+||++|++|+|+||.|+.
T Consensus 82 ~l~e~~~d~v~lAG~M~iLs~~fl~~~~~~iiNIHPaLlpaFkG~~a~k~Aleagv~~~GctvHfV~EevD~G~iI~q~~ 161 (206)
T KOG3076|consen 82 VLLELGTDLVCLAGYMRILSGEFLSQLPKRIINIHPALLPAFKGLHAIKQALEAGVKLSGCTVHFVIEEVDTGPIIAQMA 161 (206)
T ss_pred HHHHhCCCEEEehhhHHHcCHHHHhhcccceEecccccccccCCchHHHHHHHhccccccceEEEehhhccCCCceEEEe
Confidence 665 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCceeeecCCcee
Q 020508 279 ERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTV 323 (325)
Q Consensus 279 ~~I~~~dt~~~l~~r~~~~~~~ll~~al~~i~~g~~~~~~~~~~~ 323 (325)
++|.++||.+++.+|++.+|+.+|++|+..+++++..+++++||+
T Consensus 162 v~V~~~Dt~esl~qrv~~aEH~~~~~Ai~~v~~~~~~~~~~~~~~ 206 (206)
T KOG3076|consen 162 VPVIPGDTLESLEQRVHDAEHKAFVEAIKAVCEGRVLPYETGRTV 206 (206)
T ss_pred eeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcceeCCCCCcC
Confidence 999999999999999999999999999999999999999999985
No 12
>PLN02285 methionyl-tRNA formyltransferase
Probab=100.00 E-value=2.5e-42 Score=331.32 Aligned_cols=189 Identities=24% Similarity=0.361 Sum_probs=169.1
Q ss_pred CCCCceEEEEEeCC--chHHHHHHHHhhcCCCCceEEEEEeCCCCCC-------CchHHHHHHHCCCCEEEecCCCChhH
Q 020508 125 IDPKYKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGP-------NSHVIRFLERHGIPYHYLCAKENERE 195 (325)
Q Consensus 125 ~~~~~ri~v~~Sg~--g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~-------~~~~~~~a~~~gIp~~~~~~~~~~~~ 195 (325)
.++|+||+||+|+. .+||++|+++.+++..+++|++|+|+++++. .+++.++|+++|||++.+......++
T Consensus 3 ~~~~~kI~f~Gt~~fa~~~L~~L~~~~~~~~~~~~iv~Vvt~~~~~~gr~~~~~~~pv~~~A~~~gIp~~~v~~~~~~~~ 82 (334)
T PLN02285 3 SGRKKRLVFLGTPEVAATVLDALLDASQAPDSAFEVAAVVTQPPARRGRGRKLMPSPVAQLALDRGFPPDLIFTPEKAGE 82 (334)
T ss_pred CCCccEEEEEECCHHHHHHHHHHHhhhhccCCCCeEEEEEeCCCCcccCCcccCCCHHHHHHHHcCCCcceecCccccCC
Confidence 35789999999997 4799999998888877899999999998653 25799999999999543221112334
Q ss_pred HHHHHHhc--CCCEEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhCCcEeEEEEEEecCCCCCCCe
Q 020508 196 EELLELVQ--NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPI 273 (325)
Q Consensus 196 ~~~~~~l~--~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvh~v~~~~D~G~I 273 (325)
+++++.++ ++|++|+++|++|||+++++.+++++||+|||+||+|||++|++|||++|++++|+|+|+|++++|+|||
T Consensus 83 ~~~~~~l~~~~~Dliv~~~~~~ilp~~~l~~~~~g~iNiHpSLLP~yRG~~pi~~ai~~G~~~tGvTih~~~~~~D~G~I 162 (334)
T PLN02285 83 EDFLSALRELQPDLCITAAYGNILPQKFLDIPKLGTVNIHPSLLPLYRGAAPVQRALQDGVNETGVSVAFTVRALDAGPV 162 (334)
T ss_pred HHHHHHHHhhCCCEEEhhHhhhhcCHHHHhhccCCEEEEecccccCCCCcCHHHHHHHcCCCcEEEEEEEECCCccCCCE
Confidence 56777776 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCc
Q 020508 274 IEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELR 313 (325)
Q Consensus 274 i~Q~~~~I~~~dt~~~l~~r~~~~~~~ll~~al~~i~~g~ 313 (325)
|+|+.++|.++||..+|++|+..++.+++.+++..+.+|.
T Consensus 163 i~q~~~~I~~~dt~~~L~~kl~~~~~~ll~~~l~~l~~~~ 202 (334)
T PLN02285 163 IAQERVEVDEDIKAPELLPLLFELGTKLLLRELPSVLDGS 202 (334)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999885
No 13
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.3e-42 Score=321.22 Aligned_cols=181 Identities=25% Similarity=0.338 Sum_probs=164.2
Q ss_pred CceEEEEEeCCc--hHHHHHHHHhhcCCCCceEEEEEeCCCCCC-------CchHHHHHHHCCCCEEEecCCCChhHHHH
Q 020508 128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-------NSHVIRFLERHGIPYHYLCAKENEREEEL 198 (325)
Q Consensus 128 ~~ri~v~~Sg~g--~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~-------~~~~~~~a~~~gIp~~~~~~~~~~~~~~~ 198 (325)
++||+||++... .+|+.|++. +++|++|+|+++++. .++++++|.++|||++ .|.+ .+++++
T Consensus 1 ~mkivF~GTp~fa~~~L~~L~~~------~~eivaV~Tqpdkp~gR~~~l~~spVk~~A~~~~ipv~-qP~~--l~~~e~ 71 (307)
T COG0223 1 MMRIVFFGTPEFAVPSLEALIEA------GHEIVAVVTQPDKPAGRGKKLTPSPVKRLALELGIPVF-QPEK--LNDPEF 71 (307)
T ss_pred CcEEEEEcCchhhHHHHHHHHhC------CCceEEEEeCCCCccCCCCcCCCChHHHHHHHcCCcee-cccc--CCcHHH
Confidence 479999999864 578888863 489999999998764 2789999999999987 4533 233467
Q ss_pred HHHhc--CCCEEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhCCcEeEEEEEEecCCCCCCCeEEE
Q 020508 199 LELVQ--NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQ 276 (325)
Q Consensus 199 ~~~l~--~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvh~v~~~~D~G~Ii~Q 276 (325)
.+.++ ++|++|++.|++|||+++|+.+++||+|+||||||+|||++|++|||+||+++||+|+|+|++++|+|||++|
T Consensus 72 ~~~l~~l~~D~ivvvayG~ilp~~iL~~~~~G~iNvH~SLLPr~RGaAPIq~aI~~Gd~~TGvTim~M~~~lDaG~Il~q 151 (307)
T COG0223 72 LEELAALDPDLIVVVAYGQILPKEILDLPPYGCINLHPSLLPRYRGAAPIQWAILNGDTETGVTIMQMDEGLDAGDILAQ 151 (307)
T ss_pred HHHHhccCCCEEEEEehhhhCCHHHHhcCcCCeEEecCccCccccCccHHHHHHHcCCcccceEEEEccccCCCcceeee
Confidence 77776 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCceeee
Q 020508 277 MVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPY 317 (325)
Q Consensus 277 ~~~~I~~~dt~~~l~~r~~~~~~~ll~~al~~i~~g~~~~~ 317 (325)
+.++|.++||..+|++|+.+.+.+++.+++..+.+|.+.+.
T Consensus 152 ~~~~I~~~dta~~L~~kLa~~ga~lL~~~L~~i~~g~~~~~ 192 (307)
T COG0223 152 REVPIEPDDTAGSLHDKLAELGAELLLETLPQLEAGTLTPI 192 (307)
T ss_pred EEeccCCcccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 99999999999999999999999999999999999987754
No 14
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=100.00 E-value=3.5e-41 Score=297.52 Aligned_cols=175 Identities=34% Similarity=0.480 Sum_probs=150.2
Q ss_pred ceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecC-CCC---hhHHHHHHHhc-
Q 020508 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA-KEN---EREEELLELVQ- 203 (325)
Q Consensus 129 ~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~-~~~---~~~~~~~~~l~- 203 (325)
|||+||+||.|++++.++++++++...+++++|+|++++ ......+.+.++|...+.. ... ..++++.+.++
T Consensus 1 mrI~~~~Sg~~~~~~~~l~~l~~~~~~~~iv~Vit~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 77 (181)
T PF00551_consen 1 MRIVFFGSGSGSFLKALLEALKARGHNVEIVLVITNPDK---PRGRSRAIKNGIPAQVADEKNFQPRSENDEELLELLES 77 (181)
T ss_dssp EEEEEEESSSSHHHHHHHHHHHTTSSEEEEEEEEESSTT---THHHHHHHHTTHHEEEHHGGGSSSHHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCHHHHHHHHHHHhCCCCceEEEEeccccc---cccccccccCCCCEEeccccCCCchHhhhhHHHHHHHh
Confidence 699999999999999999998887766789999999874 4567889999999987762 221 24567888886
Q ss_pred -CCCEEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhCCcEeEEEEEEecCCCCCCCeEEEEEEeCC
Q 020508 204 -NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVS 282 (325)
Q Consensus 204 -~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvh~v~~~~D~G~Ii~Q~~~~I~ 282 (325)
++|++|+++|+++||+++++.|+++++|+|||+||+|||++|++|||++|++++|+|+|++++++|+||||.|+.++|.
T Consensus 78 ~~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHpslLP~yrG~~p~~~ai~~g~~~~G~Tvh~~~~~~D~G~Ii~q~~~~i~ 157 (181)
T PF00551_consen 78 LNPDLIVVAGYGRILPKEFLSIPPYGIINIHPSLLPKYRGASPIQWAILNGEKETGVTVHFMDEGLDAGPIIAQKKFPIE 157 (181)
T ss_dssp TT-SEEEESS-SS---HHHHHHSTTSEEEEESSSTTTTBSSTHHHHHHHHTSSEEEEEEEEE-SSTTTSEEEEEEEEE--
T ss_pred hccceeehhhhHHHhhhhhhhcccccEEEEeecCCccCCCcchhhhhhcCCcceeeeEEEEecccCcCCCeEEEEEEEcC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q 020508 283 HRDNLRTFVQKSEDVEKQCLAKAI 306 (325)
Q Consensus 283 ~~dt~~~l~~r~~~~~~~ll~~al 306 (325)
++||..+|++|+.+++.+++++++
T Consensus 158 ~~dt~~~l~~r~~~~~~~~l~~ai 181 (181)
T PF00551_consen 158 PDDTAESLYERLAEAEAELLVEAI 181 (181)
T ss_dssp TT--HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999986
No 15
>PRK06988 putative formyltransferase; Provisional
Probab=100.00 E-value=1.5e-39 Score=309.76 Aligned_cols=181 Identities=24% Similarity=0.323 Sum_probs=161.2
Q ss_pred CceEEEEEeCC-c-hHHHHHHHHhhcCCCCceEEEEEeCCCCCC----CchHHHHHHHCCCCEEEecCCCChhHHHHHHH
Q 020508 128 KYKVAVLASKQ-E-HCLVDFLYGWQEGKLPVEITCVISNHDRGP----NSHVIRFLERHGIPYHYLCAKENEREEELLEL 201 (325)
Q Consensus 128 ~~ri~v~~Sg~-g-~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~----~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~ 201 (325)
++||+||+|+. + .||+.|++. +++|++|+|+++++. ..++.++|+++|||++... +.+++++.+.
T Consensus 2 ~mkIvf~Gs~~~a~~~L~~L~~~------~~~i~~Vvt~~d~~~~~~~~~~v~~~A~~~gip~~~~~---~~~~~~~~~~ 72 (312)
T PRK06988 2 KPRAVVFAYHNVGVRCLQVLLAR------GVDVALVVTHEDNPTENIWFGSVAAVAAEHGIPVITPA---DPNDPELRAA 72 (312)
T ss_pred CcEEEEEeCcHHHHHHHHHHHhC------CCCEEEEEcCCCCCccCcCCCHHHHHHHHcCCcEEccc---cCCCHHHHHH
Confidence 47999999986 3 488888753 478999999986543 2579999999999997532 2234567777
Q ss_pred hc--CCCEEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhCCcEeEEEEEEecCCCCCCCeEEEEEE
Q 020508 202 VQ--NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVE 279 (325)
Q Consensus 202 l~--~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvh~v~~~~D~G~Ii~Q~~~ 279 (325)
++ ++|++|+++|++|||+++++.+++++||+|||+||+|||++|++|||++|++++|+|+|+|++++|+|||++|+.+
T Consensus 73 l~~~~~Dliv~~~~~~iip~~il~~~~~g~iNiHpslLP~yRG~~pi~~ai~~g~~~tGvTih~~~~~~D~G~Il~q~~~ 152 (312)
T PRK06988 73 VAAAAPDFIFSFYYRHMIPVDLLALAPRGAYNMHGSLLPKYRGRVPVNWAVLNGETETGATLHEMVAKPDAGAIVDQTAV 152 (312)
T ss_pred HHhcCCCEEEEehhccccCHHHHhcCCCCEEEeeCccccCCCCcCHHHHHHHcCCCceEEEEEEECCCCCCCCeEEEEEE
Confidence 76 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCceeee
Q 020508 280 RVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPY 317 (325)
Q Consensus 280 ~I~~~dt~~~l~~r~~~~~~~ll~~al~~i~~g~~~~~ 317 (325)
+|.++||..+|++|+...+.+++.+++..+.+|++.+.
T Consensus 153 ~I~~~dt~~~L~~kl~~~~~~ll~~~l~~l~~g~~~~~ 190 (312)
T PRK06988 153 PILPDDTAAQVFDKVTVAAEQTLWRVLPALLAGEAPHL 190 (312)
T ss_pred ecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 99999999999999999999999999999998876543
No 16
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=100.00 E-value=2.1e-39 Score=308.94 Aligned_cols=179 Identities=27% Similarity=0.397 Sum_probs=159.0
Q ss_pred ceEEEEEeCCc--hHHHHHHHHhhcCCCCceEEEEEeCCCCCC-------CchHHHHHHHCCCCEEEecCCCChhHHHHH
Q 020508 129 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-------NSHVIRFLERHGIPYHYLCAKENEREEELL 199 (325)
Q Consensus 129 ~ri~v~~Sg~g--~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~-------~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~ 199 (325)
|||+||+|+.- .+|+.|++. +++|++|+|+++++. ..++.++|+++|||++...+ .+.++.+
T Consensus 1 mkIvf~Gs~~~a~~~L~~L~~~------~~~i~~Vvt~pd~~~~r~~~~~~~~v~~~A~~~~Ipv~~~~~---~~~~~~~ 71 (313)
T TIGR00460 1 LRIVFFGTPTFSLPVLEELRED------NFEVVGVVTQPDKPAGRGKKLTPPPVKVLAEEKGIPVFQPEK---QRQLEEL 71 (313)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCcEEEEEcCCCCccCCCCCCCCChHHHHHHHcCCCEEecCC---CCcHHHH
Confidence 59999998864 477777653 489999999887542 35799999999999986442 1223556
Q ss_pred HHhc--CCCEEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhCCcEeEEEEEEecCCCCCCCeEEEE
Q 020508 200 ELVQ--NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQM 277 (325)
Q Consensus 200 ~~l~--~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvh~v~~~~D~G~Ii~Q~ 277 (325)
+.++ ++|++|+++|++|||+++++.+++++||+|||+||+|||++|++|||++|++++|+|+|+|++++|+|||++|+
T Consensus 72 ~~l~~~~~Dliv~~~~~~iip~~il~~~~~g~iNiHpSlLP~yRG~~pi~wai~~G~~~tGvTih~~~~~~D~G~Ii~q~ 151 (313)
T TIGR00460 72 PLVRELKPDVIVVVSFGKILPKEFLDLFPYGCINVHPSLLPRWRGGAPIQRAILNGDKKTGVTIMQMVPKMDAGDILKQE 151 (313)
T ss_pred HHHHhhCCCEEEEccchhhCCHHHHhhccCCEEEecCccccCCCCccHHHHHHHCCCCeEEEEEEEEccccCCCCeEEEE
Confidence 6665 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCceee
Q 020508 278 VERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLP 316 (325)
Q Consensus 278 ~~~I~~~dt~~~l~~r~~~~~~~ll~~al~~i~~g~~~~ 316 (325)
.++|.++||..+|++|+..++.+++.+++..+.+|.+.+
T Consensus 152 ~~~I~~~~t~~~l~~~l~~~~~~ll~~~l~~l~~~~~~~ 190 (313)
T TIGR00460 152 TFPIEEEDNSGTLSDKLSELGAQLLIETLKELPEGKNKP 190 (313)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 999999999999999999999999999999999998764
No 17
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=100.00 E-value=2.3e-39 Score=308.18 Aligned_cols=181 Identities=25% Similarity=0.356 Sum_probs=161.0
Q ss_pred ceEEEEEeCCc--hHHHHHHHHhhcCCCCceEEEEEeCCCCCC-------CchHHHHHHHCCCCEEEecCCCChhHHHHH
Q 020508 129 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-------NSHVIRFLERHGIPYHYLCAKENEREEELL 199 (325)
Q Consensus 129 ~ri~v~~Sg~g--~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~-------~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~ 199 (325)
|||+||+|+.- .+|+.|++. +++|++|+|.++++. .+++.++|+++|||++... . .+++++.
T Consensus 1 mkIvf~G~~~~a~~~L~~L~~~------~~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a~~~~Ip~~~~~-~--~~~~~~~ 71 (309)
T PRK00005 1 MRIVFMGTPEFAVPSLKALLES------GHEVVAVVTQPDRPAGRGKKLTPSPVKQLALEHGIPVLQPE-K--LRDPEFL 71 (309)
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCcEEEEECCCCCCCCCCCCCCCCHHHHHHHHcCCCEECcC-C--CCCHHHH
Confidence 69999998864 588888753 478999999876532 3579999999999997533 2 2345677
Q ss_pred HHhc--CCCEEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhCCcEeEEEEEEecCCCCCCCeEEEE
Q 020508 200 ELVQ--NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQM 277 (325)
Q Consensus 200 ~~l~--~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvh~v~~~~D~G~Ii~Q~ 277 (325)
+.++ ++|++|+++|+++||+++++.+++++||+|||+||+|||++|++|||++|++++|+|+|+|++++|+|||++|+
T Consensus 72 ~~l~~~~~Dliv~~~~~~iip~~il~~~~~g~iNiHpslLP~yRG~~pi~wai~~g~~~~GvTih~~~~~~D~G~Ii~q~ 151 (309)
T PRK00005 72 AELAALNADVIVVVAYGQILPKAVLDIPRLGCINLHASLLPRWRGAAPIQRAIIAGDAETGVTIMQMDEGLDTGDMLLKA 151 (309)
T ss_pred HHHHhcCcCEEEEehhhcccCHHHHhcCCCCEEEEeCcccccCCCccHHHHHHHcCCCeEEEEEEEECCcccCCCEEEEE
Confidence 7776 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCceeeec
Q 020508 278 VERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYE 318 (325)
Q Consensus 278 ~~~I~~~dt~~~l~~r~~~~~~~ll~~al~~i~~g~~~~~~ 318 (325)
+++|.++||..+|++|+.+++.+++.+++..+.+|.+.+++
T Consensus 152 ~~~i~~~dt~~~L~~kl~~~~~~ll~~~i~~l~~g~~~~~~ 192 (309)
T PRK00005 152 EVPITPTDTAGELHDKLAELGADLLVETLKGLEDGTLTPIP 192 (309)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCceec
Confidence 99999999999999999999999999999999999876543
No 18
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=100.00 E-value=3e-36 Score=313.12 Aligned_cols=181 Identities=22% Similarity=0.268 Sum_probs=160.7
Q ss_pred ceEEEEEeCCc--hHHHHHHHHhhcCCCCceEEEEEeCCCCCC----CchHHHHHHHCCCCEEEecCCCChhHHHHHHHh
Q 020508 129 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP----NSHVIRFLERHGIPYHYLCAKENEREEELLELV 202 (325)
Q Consensus 129 ~ri~v~~Sg~g--~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~----~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l 202 (325)
|||+||+|..- .+|+.|++. +++|++|+|.++++. .+++.++|+++|||++... . .+++++++.|
T Consensus 1 mkivf~g~~~~a~~~l~~L~~~------~~~i~~V~t~pd~~~~~~~~~~v~~~a~~~~ip~~~~~-~--~~~~~~~~~l 71 (660)
T PRK08125 1 MKAVVFAYHDIGCVGIEALLAA------GYEIAAVFTHTDNPGENHFFGSVARLAAELGIPVYAPE-D--VNHPLWVERI 71 (660)
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCcEEEEEeCCCCCcCCCCcCHHHHHHHHcCCcEEeeC-C--CCcHHHHHHH
Confidence 58999998763 477777752 478999999887643 2579999999999998644 2 2345667777
Q ss_pred c--CCCEEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhCCcEeEEEEEEecCCCCCCCeEEEEEEe
Q 020508 203 Q--NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVER 280 (325)
Q Consensus 203 ~--~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvh~v~~~~D~G~Ii~Q~~~~ 280 (325)
+ +||++|+++|++|||+++++.+++++||+|||+||+|||++|++|||++|++++|+|+|+|++++|+|||+.|+.++
T Consensus 72 ~~~~~D~iv~~~~~~ii~~~il~~~~~g~iN~H~slLP~yRG~~p~~wai~~g~~~~GvTi~~~~~~~D~G~I~~q~~~~ 151 (660)
T PRK08125 72 RELAPDVIFSFYYRNLLSDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGAIVAQQRVA 151 (660)
T ss_pred HhcCCCEEEEccccccCCHHHHhhcCCCEEEEeCCcccCCCCcCHHHHHHHcCCCcEEEEEEEECCCccCCCeeEEEEEe
Confidence 6 89999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCceeeec
Q 020508 281 VSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYE 318 (325)
Q Consensus 281 I~~~dt~~~l~~r~~~~~~~ll~~al~~i~~g~~~~~~ 318 (325)
|.++||..+|++|+.+++.+++.+++..+.+|.+.+.+
T Consensus 152 i~~~dt~~~l~~~l~~~~~~l~~~~l~~i~~~~~~~~~ 189 (660)
T PRK08125 152 IAPDDTALTLHHKLCHAARQLLEQTLPAIKHGNIPEIP 189 (660)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 99999999999999999999999999999999876443
No 19
>PRK07579 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-35 Score=271.40 Aligned_cols=172 Identities=24% Similarity=0.329 Sum_probs=146.2
Q ss_pred CceEEEEEeCC-c-hHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHH-HCCCCEEEecCCCChhHHHHHHHhcC
Q 020508 128 KYKVAVLASKQ-E-HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLE-RHGIPYHYLCAKENEREEELLELVQN 204 (325)
Q Consensus 128 ~~ri~v~~Sg~-g-~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~-~~gIp~~~~~~~~~~~~~~~~~~l~~ 204 (325)
++||+|+++.. + .|++.|+++ .+.+++++.+|.++++. +++ .+++|.+.++ -.+.+.+.+.+
T Consensus 1 ~k~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~-----~~~~~~~~~~~ 65 (245)
T PRK07579 1 MKTILVLTDNVHAHALAVDLIAR--KNDMDVDYFCSFKSQTS--------FAKEIYQSPIKQLD-----VAERVAEIVER 65 (245)
T ss_pred CceEEEEcccHHHHHHHHHHHhh--ccCcceEEEEeccCCcc--------cccccccccccCcc-----hhhhHHhhhcC
Confidence 47999999875 3 699999987 34678999999987752 222 3455544333 11235556668
Q ss_pred CCEEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhCCcEeEEEEEEecCCCCCCCeEEEEEEeCCCC
Q 020508 205 TDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHR 284 (325)
Q Consensus 205 ~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvh~v~~~~D~G~Ii~Q~~~~I~~~ 284 (325)
+|++|+++|++|||+++++.+ +++|+|||+||+|||++|++|||++|++ +|+|+|+|++++|+|||+.|+.++|.++
T Consensus 66 ~DliVvvayg~ilp~~iL~~~--~~iNiHpSLLP~yRGaaPi~wAI~nGe~-tGvTih~mde~lDtGdIi~Q~~v~I~~~ 142 (245)
T PRK07579 66 YDLVLSFHCKQRFPAKLVNGV--RCINIHPGFNPYNRGWFPQVFSIINGLK-IGATIHEMDEQLDHGPIIAQREVEIESW 142 (245)
T ss_pred CCEEEEchhhccCCHHHHhhC--CEEEEcCCcCCCCCCcCHHHHHHHCCCe-EEEEEEEEcCCCCCCCeeEEEEEEcCCC
Confidence 999999999999999999976 5999999999999999999999999985 9999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhCceeee
Q 020508 285 DNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPY 317 (325)
Q Consensus 285 dt~~~l~~r~~~~~~~ll~~al~~i~~g~~~~~ 317 (325)
||..+|++|+..++.+++.+++..+.+|.+.+.
T Consensus 143 dt~~sL~~kl~~~~~~ll~e~L~~i~~g~~~~~ 175 (245)
T PRK07579 143 DSSGSVYARVMDIERELVLEHFDAIRDGSYTAK 175 (245)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 999999999999999999999999999987544
No 20
>KOG3082 consensus Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=5.3e-25 Score=202.71 Aligned_cols=173 Identities=20% Similarity=0.310 Sum_probs=140.5
Q ss_pred CceEEEEEeCCc--hHHHHHHHHhhcCCCCceEEEEEeCCCCCC-------CchHHHHHHHCCCCEEEecCCCChhHHHH
Q 020508 128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-------NSHVIRFLERHGIPYHYLCAKENEREEEL 198 (325)
Q Consensus 128 ~~ri~v~~Sg~g--~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~-------~~~~~~~a~~~gIp~~~~~~~~~~~~~~~ 198 (325)
++++-+++|... ..++.|+.. .+.+.+++.++... .+|+...|...|.++..+-..... .
T Consensus 6 ~~nv~~~~sd~~~~~~~~~l~~~-------~~~~~iv~~pp~~~~~~k~~lpsP~a~~a~~k~la~~kl~p~~k~----~ 74 (338)
T KOG3082|consen 6 PLNVIFLGSDEFSIPILRKLIGC-------VQRVRIVSAPPKRQSRRKEILPSPAAMEANAKGLAYIKLQPGWKN----F 74 (338)
T ss_pred ccCcchhccccccchhhhhHHHH-------HHhhhhccCCcchhhccCccCCCccccccccccceeeeccChhhc----c
Confidence 467778888754 455666653 34455666553211 356777888888888654311111 1
Q ss_pred HHHhc-CCCEEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhCCcEeEEEEEEecC-CCCCCCeEEE
Q 020508 199 LELVQ-NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTE-ELDAGPIIEQ 276 (325)
Q Consensus 199 ~~~l~-~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvh~v~~-~~D~G~Ii~Q 276 (325)
.+..+ ++|++|.++|+++||.+++..+++|+||+|||+||+|||++|+++|+++|++.||||+..++. .+|.|||++|
T Consensus 75 ~d~~~~~~~l~ItaSfGrllp~kll~~~pyg~iNVHPSLLPk~RGaAPV~~all~GD~~TGVTI~~i~p~rFD~G~ilAQ 154 (338)
T KOG3082|consen 75 HDLMRPDDQLAITASFGRLLPFKLLNQLPYGGINVHPSLLPKYRGAAPVQRALLNGDTLTGVTIQTIDPKRFDKGPILAQ 154 (338)
T ss_pred ccccCCCcceEEEeehhccCcHHHHhhCCcceeecChhhcccccCcchHHHHHhcCCcccceEEEEecccccccccceec
Confidence 13333 789999999999999999999999999999999999999999999999999999999999998 7999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020508 277 MVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCE 311 (325)
Q Consensus 277 ~~~~I~~~dt~~~l~~r~~~~~~~ll~~al~~i~~ 311 (325)
+.++|++..|..+|..-+...+++++.+.+..+-+
T Consensus 155 ~~l~v~~~~t~~~L~~~Ls~~ga~lLir~l~~l~d 189 (338)
T KOG3082|consen 155 EYLAVNPKETAPELTASLSSLGANLLIRSLYNLND 189 (338)
T ss_pred ceeccCccccchHHHHHHHhccchhhHHhhccchh
Confidence 99999999999999999999999999999887755
No 21
>KOG2452 consensus Formyltetrahydrofolate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.87 E-value=1.6e-22 Score=195.19 Aligned_cols=182 Identities=18% Similarity=0.195 Sum_probs=152.4
Q ss_pred ceEEEEE-eCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCC-CchHHHHHHHCCCCEEEec--CCCChhHHHHHHHhc-
Q 020508 129 YKVAVLA-SKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP-NSHVIRFLERHGIPYHYLC--AKENEREEELLELVQ- 203 (325)
Q Consensus 129 ~ri~v~~-Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~-~~~~~~~a~~~gIp~~~~~--~~~~~~~~~~~~~l~- 203 (325)
|||++++ |-.|...+.-|. .+ +|+|++|+|-+++.. ..++.--|++-|+|++... ++.+..-+++++..+
T Consensus 1 mkiaiigqs~fg~~vy~~lr---k~--gheiv~vftipdk~g~~d~l~~ea~kdgvpv~k~srwr~k~~~lp~~~~~y~~ 75 (881)
T KOG2452|consen 1 MKIAVIGQSLFGQEVYCHLR---KE--GHEVVGVFTVPDKDGKADPLGLEAEKDGVPVFKYSRWRAKAQALPDVVAKYQA 75 (881)
T ss_pred CeeEEechhhhhHHHHHHHH---hc--CceEEEEEEecCCCCCcCcccccccccCcceechhhhhhhccccHHHHHHHHh
Confidence 5899987 445655444332 22 599999999887543 3556667899999998654 222222256777666
Q ss_pred -CCCEEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhCCcEeEEEEEEecCCCCCCCeEEEEEEeCC
Q 020508 204 -NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVS 282 (325)
Q Consensus 204 -~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvh~v~~~~D~G~Ii~Q~~~~I~ 282 (325)
.++|-|+..+.++||-++++.++++.|-+|||+||+.||++++.|.++.|+++.|.+++|.|+++|+|||+.|+++.+.
T Consensus 76 ~gaelnvlpfcsqfip~ei~~ap~~~siiyhps~lp~hrgasainwtli~gd~~~g~sifwaddgldtg~~llqk~c~v~ 155 (881)
T KOG2452|consen 76 LGAELNVLPFCSQFIPMEIISAPRHGSIIYHPSLLPRHRGASAINWTLIHGDKKGGFSIFWADDGLDTGDLLLQKECEVL 155 (881)
T ss_pred hcccccccchhhhccchhhcccccCCceeeccccCccccCccccceEEEeccccCceEEEeecCCccccchhhhhhcccC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHH-HHHHHHHHHHHHHHHhCcee
Q 020508 283 HRDNLRTFVQKSE-DVEKQCLAKAIKSYCELRVL 315 (325)
Q Consensus 283 ~~dt~~~l~~r~~-~~~~~ll~~al~~i~~g~~~ 315 (325)
++||..+||.|.. ..+...+.+++++|++|...
T Consensus 156 ~~dt~~tly~rfl~p~gi~~v~~~v~lia~gkap 189 (881)
T KOG2452|consen 156 PDDTVSTLYNRFLFPEGIKGVVQAVRLIAEGKAP 189 (881)
T ss_pred CCccHHHHHHhhcChHHHHHHHHHHHHHhcCCCC
Confidence 9999999999865 58899999999999998643
No 22
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=99.67 E-value=2.2e-16 Score=120.47 Aligned_cols=71 Identities=15% Similarity=0.135 Sum_probs=66.6
Q ss_pred eEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhccc
Q 020508 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (325)
Q Consensus 42 ~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~ 116 (325)
++++|+.||||||||++||++|+++|+||++++++. .++.|+|++.+++|. .+.++|+++|+++++++|++
T Consensus 1 ~~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~--~~~~F~m~~~~~~~~--~~~~~l~~~l~~~~~~~~l~ 71 (77)
T cd04893 1 HLVISALGTDRPGILNELTRAVSESGCNILDSRMAI--LGTEFALTMLVEGSW--DAIAKLEAALPGLARRLDLT 71 (77)
T ss_pred CEEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeE--EcCEEEEEEEEEecc--ccHHHHHHHHHHHHHHcCCE
Confidence 479999999999999999999999999999999987 589999999999985 47899999999999999997
No 23
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.64 E-value=8.2e-16 Score=116.55 Aligned_cols=70 Identities=17% Similarity=0.170 Sum_probs=65.4
Q ss_pred EEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhccc
Q 020508 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (325)
Q Consensus 44 ~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~ 116 (325)
++++.|+||||||++||++|+++|+||+++++.+. .+.|.|.+.+++|+ +.+.++|+++|+.+|+++|++
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~--~~~f~~~~~v~~p~-~~~~~~l~~~l~~l~~~l~l~ 70 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVI--HGRLSLGILVQIPD-SADSEALLKDLLFKAHELGLQ 70 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEE--cCeeEEEEEEEcCC-CCCHHHHHHHHHHHHHHcCce
Confidence 47999999999999999999999999999998664 68999999999998 678999999999999999997
No 24
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=99.63 E-value=4.2e-16 Score=120.39 Aligned_cols=74 Identities=20% Similarity=0.154 Sum_probs=70.2
Q ss_pred ceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhccc
Q 020508 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (325)
Q Consensus 41 ~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~ 116 (325)
..+++||+|.|||||||+||++||++|+||+|++|+.. .|.|+|.+.+++|+...+.++++++|++.++++|++
T Consensus 2 ~~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm--~~~ftm~~lV~~~~~~~d~~~lr~~l~~~~~~lgv~ 75 (90)
T COG3830 2 MRAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVM--DGFFTMIMLVDISKEVVDFAALRDELAAEGKKLGVD 75 (90)
T ss_pred ceEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHH--hhhceeeeEEcCChHhccHHHHHHHHHHHHHhcCcE
Confidence 47899999999999999999999999999999999775 899999999999976789999999999999999998
No 25
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.62 E-value=2.4e-15 Score=113.53 Aligned_cols=73 Identities=34% Similarity=0.621 Sum_probs=66.7
Q ss_pred EEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhccc
Q 020508 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (325)
Q Consensus 44 ~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~ 116 (325)
++++.|+||||||++||++|+++|+||+++++++....+.|+|++++.+|+...+.++|+++|+++|+++++.
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~ 73 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPVAAEFDMD 73 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHHcCCc
Confidence 5899999999999999999999999999999987667789999999999972268999999999999999875
No 26
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.58 E-value=7e-15 Score=130.65 Aligned_cols=94 Identities=11% Similarity=0.010 Sum_probs=79.4
Q ss_pred CCccccccCCC-CCCCCcceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccC--CCC--eEEEEEEEEeCCCCCC
Q 020508 24 SLKFPGEPIES-SVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE--KKN--VFYSRSEFIFDPIKWP 98 (325)
Q Consensus 24 ~~~~~~~~~~~-~~~~~~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~--~~g--~F~~~~~v~~p~~~~~ 98 (325)
+|.+.+.+... .......+|.++++|+||||||++||++|+++|+||.++++.+.+ ++| +|.|++++.+|+ +.+
T Consensus 76 ~L~i~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~-~~~ 154 (190)
T PRK11589 76 DLLIVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPA-SQD 154 (190)
T ss_pred CeEEEEEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCC-CCC
Confidence 66677755422 233334479999999999999999999999999999999999753 344 999999999999 788
Q ss_pred hHHHHHHHHhhhhhhcccce
Q 020508 99 REQMDEDFFKLSKMFNAMRS 118 (325)
Q Consensus 99 ~~~L~~~l~~l~~~l~~~~~ 118 (325)
.++|+++|+.+|++|+++-.
T Consensus 155 ~~~L~~~l~~l~~eL~vd~~ 174 (190)
T PRK11589 155 AANIEQAFKALCTELNAQGS 174 (190)
T ss_pred HHHHHHHHHHHHHHhCceEE
Confidence 99999999999999999853
No 27
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.58 E-value=7.1e-15 Score=114.73 Aligned_cols=74 Identities=20% Similarity=0.164 Sum_probs=68.0
Q ss_pred eEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcccc
Q 020508 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR 117 (325)
Q Consensus 42 ~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~ 117 (325)
++++++.|+||||||++||++|+++|+||+++++++ ..+.|+|++++++|..+.+.+.|+++|+++++++|++.
T Consensus 1 ~~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~--~~~~f~~~~~v~~~~~~~~~~~L~~~l~~l~~~~~l~~ 74 (88)
T cd04872 1 KAVITVVGKDRVGIVAGVSTKLAELNVNILDISQTI--MDGYFTMIMIVDISESNLDFAELQEELEELGKELGVKI 74 (88)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHh--hCCccEEEEEEEeCCCCCCHHHHHHHHHHHHHHcCCEE
Confidence 478999999999999999999999999999999986 47899999999999634679999999999999999983
No 28
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=99.56 E-value=8.5e-15 Score=111.38 Aligned_cols=72 Identities=19% Similarity=0.184 Sum_probs=63.4
Q ss_pred ceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhccc
Q 020508 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (325)
Q Consensus 41 ~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~ 116 (325)
+++++|+.|+||||||++||++|+++||||+++++... .+.|.+.+.+++|+ . +.++|+++|+++++++|++
T Consensus 1 ~~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~--~~~f~~~~~v~~~~-~-~~~~l~~~L~~l~~~~~l~ 72 (76)
T PF13740_consen 1 EQLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVL--GGRFTLIMLVSIPE-D-SLERLESALEELAEELGLD 72 (76)
T ss_dssp EEEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEE--TTEEEEEEEEEESH-H-HHHHHHHHHHHHHHHTT-E
T ss_pred CEEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEE--cCeEEEEEEEEeCc-c-cHHHHHHHHHHHHHHCCcE
Confidence 47899999999999999999999999999999999764 88999999999997 3 7899999999999999987
No 29
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=99.52 E-value=5.6e-14 Score=107.38 Aligned_cols=72 Identities=17% Similarity=0.179 Sum_probs=66.4
Q ss_pred EEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccC----CCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhccc
Q 020508 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE----KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (325)
Q Consensus 44 ~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~----~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~ 116 (325)
++++.|+||||+|++||++|+++|+||.++++.... ..+.|+|++++.+|+ ..+.++|+++|+.+|+++|++
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~-~~~~~~l~~~l~~l~~~~~~~ 76 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPA-GTDLDALREELEELCDDLNVD 76 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCC-CCCHHHHHHHHHHHHHHhcce
Confidence 478999999999999999999999999999998754 347999999999998 788999999999999999987
No 30
>PRK00194 hypothetical protein; Validated
Probab=99.51 E-value=6.2e-14 Score=109.68 Aligned_cols=73 Identities=22% Similarity=0.191 Sum_probs=67.8
Q ss_pred eEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhccc
Q 020508 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (325)
Q Consensus 42 ~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~ 116 (325)
++++++.|+||||||++||++|+++|+||+++++.. ..+.|++++.+++|..+.+.+.|+++|++++++++++
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~l~~l~~~~~~~ 75 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTI--MDGYFTMIMLVDISESKKDFAELKEELEELGKELGVK 75 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHh--hCCeeEEEEEEEecCCCCCHHHHHHHHHHHHHHcCCE
Confidence 799999999999999999999999999999999976 4789999999999964567899999999999999998
No 31
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.49 E-value=2.1e-13 Score=121.25 Aligned_cols=107 Identities=13% Similarity=0.019 Sum_probs=81.7
Q ss_pred CCcceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcccc
Q 020508 38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR 117 (325)
Q Consensus 38 ~~~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~ 117 (325)
+..+++++|+.|+||||||++||++|+++||||+|+++.. ++|.|+|++.++.|. ...+.|+++|..+++++|+.-
T Consensus 4 ~m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~--lgg~Fa~i~lvs~~~--~~~~~le~~L~~l~~~~~L~i 79 (190)
T PRK11589 4 SSQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAM--LGEEFTFIMLLSGSW--NAITLIESTLPLKGAELDLLI 79 (190)
T ss_pred CcccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHh--hCCceEEEEEEeCCh--hHHHHHHHHHHhhhhhcCeEE
Confidence 3668999999999999999999999999999999999954 689999999998887 478999999999999888874
Q ss_pred eeeeecC---CC--CCceEEEEEeCCchHHHHHHHH
Q 020508 118 SVVRVPD---ID--PKYKVAVLASKQEHCLVDFLYG 148 (325)
Q Consensus 118 ~~~~~~~---~~--~~~ri~v~~Sg~g~~l~~Ll~~ 148 (325)
..-+... .. .+..+-|.+..+..-++.+-+.
T Consensus 80 ~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~ 115 (190)
T PRK11589 80 VMKRTTARPRPAMPATVWVQVEVADSPHLIERFTAL 115 (190)
T ss_pred EEEeccccccccCCceEEEEEEECCCCCHHHHHHHH
Confidence 3212111 11 1255666665554444444443
No 32
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=99.35 E-value=1.8e-12 Score=111.48 Aligned_cols=94 Identities=14% Similarity=0.064 Sum_probs=81.6
Q ss_pred CCccccccCCCCC-CCCcceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeecc--CCC--CeEEEEEEEEeCCCCCC
Q 020508 24 SLKFPGEPIESSV-SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP--EKK--NVFYSRSEFIFDPIKWP 98 (325)
Q Consensus 24 ~~~~~~~~~~~~~-~~~~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~--~~~--g~F~~~~~v~~p~~~~~ 98 (325)
||.+-+..++... .....+|++.+.+.||||||.++|++|++||+||+++++... +++ .+|.+.+.+.+|. ..+
T Consensus 73 ~L~v~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa-~~~ 151 (176)
T COG2716 73 DLLVVMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPA-NLS 151 (176)
T ss_pred CeEEEEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCC-cCc
Confidence 3556666665555 667899999999999999999999999999999999999863 333 4999999999999 899
Q ss_pred hHHHHHHHHhhhhhhcccce
Q 020508 99 REQMDEDFFKLSKMFNAMRS 118 (325)
Q Consensus 99 ~~~L~~~l~~l~~~l~~~~~ 118 (325)
.+.|+++|+++|++++++-+
T Consensus 152 i~~l~~~f~al~~~L~v~~~ 171 (176)
T COG2716 152 ISALRDAFEALCDELNVDGS 171 (176)
T ss_pred HHHHHHHHHHHHHhhcceee
Confidence 99999999999999999854
No 33
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=98.98 E-value=4.4e-10 Score=87.19 Aligned_cols=71 Identities=14% Similarity=0.090 Sum_probs=58.6
Q ss_pred EEEEEcCC-CcchHHHHHHHHHhcCCeEeEeeeecc-------CCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcc
Q 020508 44 IHVFHCPD-EVGIVAKLSECIASRGGNILAADVFVP-------EKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (325)
Q Consensus 44 ~ltv~g~D-rpGIVa~Vt~~La~~giNI~~l~~~~~-------~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~ 115 (325)
++|+.|.| ++|+|++||++||++|+||.++++... ...+.+.|.+.+..|+ .+.+.|+++|..+++++|+
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~~--~~~~~lr~~L~~la~elgv 78 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQP--ADLEALRAALLELASELNV 78 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCCC--CCHHHHHHHHHHHhcccCc
Confidence 58999999 999999999999999999999998421 1113556666666554 6899999999999999999
Q ss_pred c
Q 020508 116 M 116 (325)
Q Consensus 116 ~ 116 (325)
|
T Consensus 79 D 79 (84)
T cd04871 79 D 79 (84)
T ss_pred e
Confidence 8
No 34
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=98.66 E-value=1e-07 Score=82.27 Aligned_cols=72 Identities=15% Similarity=0.053 Sum_probs=64.5
Q ss_pred ceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhccc
Q 020508 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (325)
Q Consensus 41 ~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~ 116 (325)
..++|+++|+||||++..+++..+++||||+++... ..++.|...+.++.|. ...+.|++.|..+..+.|+.
T Consensus 4 ~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla--~~g~~~a~i~lisgs~--dav~~le~~l~~l~~~~~L~ 75 (176)
T COG2716 4 HYLVITAVGADRPGLVNTLARAVASSGCNWLESRLA--MLGEEFAGIMLISGSW--DAVTLLEATLPLLGAELDLL 75 (176)
T ss_pred cEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHH--HhhcceeEEEEEeeCH--HHHHHHHHHhhcccccCCeE
Confidence 348999999999999999999999999999998873 4588999999999987 36899999999999988886
No 35
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.63 E-value=1.1e-07 Score=68.86 Aligned_cols=65 Identities=23% Similarity=0.157 Sum_probs=47.8
Q ss_pred EEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhh
Q 020508 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (325)
Q Consensus 43 ~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~ 110 (325)
|.+++.++||||++++|++.|+++|+||..+.+...... ...+.+....+. .+.+++.++|+++.
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~l~~~~ 65 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDG-VGIVFIVIVVDE--EDLEKLLEELEALP 65 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESST-TEEEEEEEEEEG--HGHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCC-ceEEEEEEECCC--CCHHHHHHHHHccc
Confidence 678999999999999999999999999999999865332 222223333322 35677777777764
No 36
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=98.45 E-value=6e-07 Score=78.79 Aligned_cols=75 Identities=20% Similarity=0.250 Sum_probs=60.8
Q ss_pred eEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcccce
Q 020508 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS 118 (325)
Q Consensus 42 ~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~~ 118 (325)
++++++.+.||||++++||++|+++|+||.+++.......|.-. +.+.+|+.....++++++|+++++.+.++..
T Consensus 2 ~~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr--~TIvv~~~~~~ieqL~kQL~KLidVl~V~~~ 76 (174)
T CHL00100 2 KHTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISR--ITMVVPGDDRTIEQLTKQLYKLVNILKVQDI 76 (174)
T ss_pred eEEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccE--EEEEEECCHHHHHHHHHHHHHHhHhhEEEec
Confidence 57899999999999999999999999999999995434556554 4444565222389999999999999988853
No 37
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=98.40 E-value=6.2e-07 Score=68.25 Aligned_cols=68 Identities=15% Similarity=0.116 Sum_probs=52.2
Q ss_pred CcceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhh
Q 020508 39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (325)
Q Consensus 39 ~~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~ 110 (325)
...+..|.+.+.||||++++|++.+++.|+||.+++.......+.+.+.+.+++++ .++|..-++.+-
T Consensus 3 ~~f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d----~~~L~~ii~~L~ 70 (80)
T PF13291_consen 3 KSFPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKD----LEHLNQIIRKLR 70 (80)
T ss_dssp --EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESS----HHHHHHHHHHHC
T ss_pred cEEEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECC----HHHHHHHHHHHH
Confidence 34678899999999999999999999999999999997632378999999999976 455555555543
No 38
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.24 E-value=5.4e-06 Score=62.48 Aligned_cols=47 Identities=11% Similarity=0.073 Sum_probs=41.3
Q ss_pred EEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEe
Q 020508 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIF 92 (325)
Q Consensus 44 ~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~ 92 (325)
++++.|+||||+++++|+.|+++|+||.+.+.+.. ++.+...+.|.-
T Consensus 2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~--~~~~~d~f~V~d 48 (74)
T cd04925 2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTH--NGRLACVIYVRD 48 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEE--CCEEEEEEEEEc
Confidence 68999999999999999999999999999988753 778887887753
No 39
>PRK08577 hypothetical protein; Provisional
Probab=98.13 E-value=2.2e-05 Score=66.21 Aligned_cols=76 Identities=18% Similarity=0.178 Sum_probs=60.9
Q ss_pred CCCCcceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhh
Q 020508 36 VSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (325)
Q Consensus 36 ~~~~~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~ 111 (325)
..+.-..+.+++.+.|+||+++++++.|+++++||.++++.....++.+.+.+.+++++...+..++.+.|.++..
T Consensus 50 ~~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~~~l~~l~~~L~~l~~ 125 (136)
T PRK08577 50 ALPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSDIDLEELEEELKKLEE 125 (136)
T ss_pred CCCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCchhhHHHHHHHHHcCCC
Confidence 3334458999999999999999999999999999999988654446788899999998721456777777777653
No 40
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.97 E-value=3.1e-05 Score=56.45 Aligned_cols=63 Identities=19% Similarity=0.073 Sum_probs=44.0
Q ss_pred EEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccC---CCCeEEEEEEEEeCCCCCChHHHHHHHHh
Q 020508 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE---KKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (325)
Q Consensus 45 ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~---~~g~F~~~~~v~~p~~~~~~~~L~~~l~~ 108 (325)
+.+..+|+||.++++++.++++|+||.++.+.... ..+...+.+.++++. ..+.+.+.+.|.+
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~-~~~l~~l~~~l~~ 66 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRG-AEHIEEIIAALRE 66 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCC-HHHHHHHHHHHHH
Confidence 35788999999999999999999999999875322 235555666666654 2233444444443
No 41
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.95 E-value=4.2e-05 Score=56.84 Aligned_cols=61 Identities=15% Similarity=0.228 Sum_probs=48.4
Q ss_pred EEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhh
Q 020508 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (325)
Q Consensus 45 ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~ 110 (325)
+.+.++||||.+++|++.+++.|+||.++++... .++...+.+.+++++ .++|..-++.+.
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~-~~~~~~~~~~vev~~----~~~l~~i~~~L~ 62 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQ-GRDYTVRDITVDAPS----EEHAETIVAAVR 62 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEe-cCCEEEEEEEEEcCC----HHHHHHHHHHHh
Confidence 6788999999999999999999999999888532 257777888888876 455555555544
No 42
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.92 E-value=5.8e-05 Score=56.28 Aligned_cols=64 Identities=14% Similarity=0.160 Sum_probs=48.0
Q ss_pred EEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHh
Q 020508 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (325)
Q Consensus 44 ~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~ 108 (325)
.+.+.++||||+.+++++.|+++|+||..+++... .++.+.+.+.+++.+.....+++.++|.+
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~-~~~~~~i~~~v~v~~~~~~l~~l~~~L~~ 65 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIP-IHGRANVTISIDTSTMNGDIDELLEELRE 65 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCC-CCCeEEEEEEEEcCchHHHHHHHHHHHhc
Confidence 57889999999999999999999999999988532 35688888888876621133444444443
No 43
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=97.90 E-value=9.3e-05 Score=53.92 Aligned_cols=49 Identities=18% Similarity=0.168 Sum_probs=40.4
Q ss_pred EEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCC
Q 020508 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDP 94 (325)
Q Consensus 44 ~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~ 94 (325)
.+++.|+|+||++++++++|+++|+||.++..... .+.....+.+..|.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~--~~~~~~~~~v~~~~ 50 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTT--GERALDVFYVTDSD 50 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeec--CCEEEEEEEEECCC
Confidence 57899999999999999999999999999998654 23555666666665
No 44
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=97.87 E-value=6.5e-05 Score=57.13 Aligned_cols=68 Identities=12% Similarity=0.088 Sum_probs=54.7
Q ss_pred eEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhh
Q 020508 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (325)
Q Consensus 42 ~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~ 111 (325)
++.+++...++||+.++|++.++.+|.||.+++..-....+...|.+.+.-. +...+++.+.|+++-+
T Consensus 2 ~~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~--~~~i~qi~kQL~KLid 69 (76)
T PRK06737 2 SHTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCT--ENEATLLVSQLKKLIN 69 (76)
T ss_pred eEEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECC--HHHHHHHHHHHhCCcC
Confidence 5789999999999999999999999999999998644455788877776533 3457788888777644
No 45
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.86 E-value=6.1e-05 Score=55.34 Aligned_cols=64 Identities=19% Similarity=0.181 Sum_probs=45.0
Q ss_pred EEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhh
Q 020508 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (325)
Q Consensus 43 ~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l 109 (325)
+.+++..+|+||.++++++.|+++|+||.++.+...+....-.+++.++.++ +.+.+.+.|++.
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~~---~~~~~~~~L~~~ 65 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQE---DRERAKEILKEA 65 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCHH---HHHHHHHHHHHc
Confidence 6789999999999999999999999999999765432111222344444332 456677766653
No 46
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.85 E-value=0.00012 Score=53.66 Aligned_cols=49 Identities=16% Similarity=0.097 Sum_probs=39.9
Q ss_pred EEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCC
Q 020508 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDP 94 (325)
Q Consensus 44 ~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~ 94 (325)
.+.+.++||||+++++++.|+++|+||.++..... .+.....+.+..+.
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~--~~~~~~~f~i~~~~ 50 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATL--GERAEDVFYVTDAD 50 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEec--CCEEEEEEEEECCC
Confidence 57889999999999999999999999999998643 44555566666554
No 47
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=97.81 E-value=0.00011 Score=53.24 Aligned_cols=65 Identities=23% Similarity=0.116 Sum_probs=48.6
Q ss_pred EEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhh
Q 020508 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (325)
Q Consensus 44 ~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~ 110 (325)
.+.+.+.|+||+++++++.|+++|+||..+.+...+.++.+.+.+.+..+. ...+++.++|..++
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~~ 66 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDD--DVIEQIVKQLNKLV 66 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECCH--HHHHHHHHHHhCCc
Confidence 467889999999999999999999999999885432456777777776542 34555666665544
No 48
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.72 E-value=0.00012 Score=54.07 Aligned_cols=65 Identities=11% Similarity=0.039 Sum_probs=47.7
Q ss_pred EEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhh
Q 020508 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (325)
Q Consensus 43 ~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~ 111 (325)
|.+.+.+.|+||+++++++.|+++|+||..+.+......+...+.+.+... +.+++++.++.+.+
T Consensus 1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~----~~~~l~~~i~~L~~ 65 (79)
T cd04881 1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHET----SEAALNAALAEIEA 65 (79)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccC----CHHHHHHHHHHHHc
Confidence 468899999999999999999999999999987432222556556666543 35666666666543
No 49
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.72 E-value=0.00037 Score=51.83 Aligned_cols=64 Identities=16% Similarity=0.104 Sum_probs=49.8
Q ss_pred EEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHh
Q 020508 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (325)
Q Consensus 43 ~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~ 108 (325)
+.+.|.++||||+.+.++.+|+.+|.||.+.+.++. ..|+=.-.+.|.-++ +.+.+.|++++++
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt-~dG~~LDtF~V~d~~-~~~~~~~~~~~~~ 65 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFST-DDGLALDIFVVTGWK-RGETAALGHALQK 65 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEc-CCCeEEEEEEEecCC-ccchHHHHHHHHH
Confidence 468899999999999999999999999999888754 345333345555445 5677888888775
No 50
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=97.72 E-value=0.00014 Score=53.65 Aligned_cols=62 Identities=18% Similarity=0.120 Sum_probs=45.7
Q ss_pred EEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhh
Q 020508 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (325)
Q Consensus 45 ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~ 110 (325)
+.+.++|+||.++++++.|+++|+||.++...-....+...+.+.++.+. ..++.++|.++.
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~~~----~~~~~~~l~~~~ 63 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEPV----PDEVLEELRALP 63 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCCCC----CHHHHHHHHcCC
Confidence 46789999999999999999999999988764322345666667775543 346666666643
No 51
>PRK04435 hypothetical protein; Provisional
Probab=97.72 E-value=0.00018 Score=61.52 Aligned_cols=81 Identities=19% Similarity=0.170 Sum_probs=60.5
Q ss_pred cCCccccccCCCCCCCCcceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHH
Q 020508 23 KSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQM 102 (325)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L 102 (325)
||.=+++.+. .......+.+.+.|+||++++|.+.|+++|+||..+++.. +..|...+.+.+++.+...+.++|
T Consensus 55 kd~vf~~~~~-----~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i-~~~g~a~vs~tVevs~~~~~L~~L 128 (147)
T PRK04435 55 KDYVFPFDEM-----VKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSI-PLQGRANVTISIDTSSMEGDIDEL 128 (147)
T ss_pred CCeeECcccc-----CCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEc-CCCCEEEEEEEEEeCChHHHHHHH
Confidence 5555666665 2446789999999999999999999999999999999864 346777777888776621245555
Q ss_pred HHHHHhh
Q 020508 103 DEDFFKL 109 (325)
Q Consensus 103 ~~~l~~l 109 (325)
.++|+.+
T Consensus 129 i~~L~~i 135 (147)
T PRK04435 129 LEKLRNL 135 (147)
T ss_pred HHHHHcC
Confidence 5555544
No 52
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=97.71 E-value=0.00014 Score=51.33 Aligned_cols=62 Identities=15% Similarity=0.105 Sum_probs=45.7
Q ss_pred EEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHh
Q 020508 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (325)
Q Consensus 45 ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~ 108 (325)
+.+.++|+||+++++++.|+++++||.++..... ..+...+.+.+.++. ..+.+.+.++|..
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~l~~ 62 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTD-DDGLATIRLTLEVRD-LEHLARIMRKLRQ 62 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEEC-CCCEEEEEEEEEECC-HHHHHHHHHHHhC
Confidence 4678999999999999999999999999988532 235666777787776 3344444444443
No 53
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=97.68 E-value=0.00018 Score=55.54 Aligned_cols=73 Identities=10% Similarity=0.069 Sum_probs=57.0
Q ss_pred eEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcc
Q 020508 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (325)
Q Consensus 42 ~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~ 115 (325)
+.++++.-.|+||+.+++|..++.+|.||.+++..-....+.-.|.+.+...+ ....+++.+.|+++-+-+.+
T Consensus 2 k~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d-~~~ieqI~kQL~KlidVikV 74 (84)
T PRK13562 2 TRILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQD-DTSLHILIKKLKQQINVLTV 74 (84)
T ss_pred cEEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCC-HHHHHHHHHHHhCCccEEEE
Confidence 46789999999999999999999999999999986544567888888876444 34567788877776544433
No 54
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.66 E-value=0.00038 Score=50.55 Aligned_cols=64 Identities=22% Similarity=0.281 Sum_probs=46.8
Q ss_pred EEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhh
Q 020508 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (325)
Q Consensus 44 ~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~ 111 (325)
.+++.++|+||.++++++.|+++++||.++.+... .++.+.+.+.+ .. ....+.+.++|+++..
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~-~~~~~~~~i~~--~~-~~~~~~~~~~L~~~~~ 65 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIE-REGKARIYMEL--EG-VGDIEELVEELRSLPI 65 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEecc-CCCeEEEEEEE--ec-cccHHHHHHHHhCCCC
Confidence 57889999999999999999999999999887543 24555555444 33 2245566676666543
No 55
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=97.64 E-value=0.00034 Score=53.21 Aligned_cols=68 Identities=7% Similarity=0.091 Sum_probs=55.3
Q ss_pred ceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhh
Q 020508 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (325)
Q Consensus 41 ~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~ 111 (325)
+++.+++...++||.+++|++.++.+|.||.+++.......+.-.|.+.++ + +...+++.+.|+++-+
T Consensus 2 m~~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~--~-~~~i~ql~kQL~KL~d 69 (76)
T PRK11152 2 MQHQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA--S-ERPIDLLSSQLNKLVD 69 (76)
T ss_pred ceEEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC--C-CchHHHHHHHHhcCcC
Confidence 367899999999999999999999999999999996533456777777774 3 4678888888887643
No 56
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=97.60 E-value=0.00035 Score=50.35 Aligned_cols=62 Identities=24% Similarity=0.282 Sum_probs=46.2
Q ss_pred EEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhh
Q 020508 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (325)
Q Consensus 45 ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~ 110 (325)
+.+..+|++|+++++++.|+++|+||.++........+...+.+.+ .. . ..+++.+.|.++.
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v--~~-~-~~~~l~~~l~~~~ 63 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV--DS-P-VPEEVLEELKALP 63 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc--CC-C-CCHHHHHHHHcCC
Confidence 5678999999999999999999999999988543223566555555 33 2 4567777776654
No 57
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=97.53 E-value=0.0005 Score=54.42 Aligned_cols=72 Identities=15% Similarity=0.049 Sum_probs=54.8
Q ss_pred CcceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhh
Q 020508 39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF 113 (325)
Q Consensus 39 ~~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l 113 (325)
+..++++++.-.|+||+.++||..++.+|.||.+++.--....+.-.|.+.+. + +...+++...|+++-+=+
T Consensus 5 ~~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~--~-~~~i~Qi~kQL~KLidVi 76 (96)
T PRK08178 5 THDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN--D-DQRLEQMISQIEKLEDVL 76 (96)
T ss_pred CCCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc--C-chHHHHHHHHHhCCcCEE
Confidence 35578999999999999999999999999999999885333345555555553 3 456788888887765444
No 58
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=97.51 E-value=0.00031 Score=52.64 Aligned_cols=58 Identities=10% Similarity=0.120 Sum_probs=44.0
Q ss_pred EEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhh
Q 020508 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (325)
Q Consensus 44 ~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~ 110 (325)
.+.+.+.||+|++++|++.+++.|+||..+++... +. +.+++.+.+ .++|..-++++-
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~---~~--i~l~i~v~~----~~~L~~li~~L~ 59 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK---GR--IYLNFPTIE----FEKLQTLMPEIR 59 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC---Ce--EEEEeEecC----HHHHHHHHHHHh
Confidence 47889999999999999999999999999998532 33 667777765 445544444443
No 59
>PRK03381 PII uridylyl-transferase; Provisional
Probab=97.47 E-value=0.003 Score=67.69 Aligned_cols=71 Identities=13% Similarity=-0.035 Sum_probs=57.0
Q ss_pred cceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCC-CChHHHHHHHHhhhhh
Q 020508 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIK-WPREQMDEDFFKLSKM 112 (325)
Q Consensus 40 ~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~-~~~~~L~~~l~~l~~~ 112 (325)
.....++|.|+||||++++||.+|+.+|+||++.+.++ ..|.+..++.|.-|... ...+.++++|++....
T Consensus 597 ~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t--~dg~~ld~F~V~~~~~~~~~~~~l~~~L~~~L~~ 668 (774)
T PRK03381 597 PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRS--HDGVAVLEFVVSPRFGSPPDAALLRQDLRRALDG 668 (774)
T ss_pred CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEe--cCCEEEEEEEEECCCCCcchHHHHHHHHHHHHcC
Confidence 35678999999999999999999999999999999986 58888888888765411 2246788888766443
No 60
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=97.43 E-value=0.00064 Score=59.06 Aligned_cols=73 Identities=18% Similarity=0.137 Sum_probs=56.7
Q ss_pred eEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhccc
Q 020508 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (325)
Q Consensus 42 ~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~ 116 (325)
++++++.-.|+||..++|++.++++|+||.++...-....+...+.+.++..+ ...+++...|+++-+=+.+.
T Consensus 2 ~~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~--~~i~qi~kQl~KLidV~~V~ 74 (161)
T PRK11895 2 RHTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDE--QVIEQITKQLNKLIDVLKVV 74 (161)
T ss_pred eEEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCH--HHHHHHHHHHhccccEEEEE
Confidence 57899999999999999999999999999999875432356777777776533 45788888888876544443
No 61
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.42 E-value=0.0015 Score=49.40 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=31.7
Q ss_pred EEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeec
Q 020508 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFV 77 (325)
Q Consensus 44 ~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~ 77 (325)
.+.+.++||||+.++++++|+++|+||.+.+-.+
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~T 35 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVST 35 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEE
Confidence 6889999999999999999999999999988764
No 62
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=97.40 E-value=0.00065 Score=58.77 Aligned_cols=72 Identities=19% Similarity=0.173 Sum_probs=57.4
Q ss_pred EEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhccc
Q 020508 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (325)
Q Consensus 43 ~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~ 116 (325)
+++++.-.|+||..++|++.++++|+||.++...-....+...|.+.++.++ ...+++...|+++-+=+.+.
T Consensus 2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d~--~~i~qi~kQl~Kli~V~~V~ 73 (157)
T TIGR00119 2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDD--KVLEQITKQLNKLVDVIKVS 73 (157)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECCH--HHHHHHHHHHhcCccEEEEE
Confidence 5789999999999999999999999999999875433357777778887643 56788888888876555444
No 63
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.36 E-value=0.0019 Score=47.49 Aligned_cols=62 Identities=18% Similarity=0.177 Sum_probs=43.9
Q ss_pred EEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhh
Q 020508 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (325)
Q Consensus 44 ~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l 109 (325)
.+++..+|+||..+++++.|+++|+||.++...-....+.-.+.+.++.+ +.+.+.+.|.+.
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~----~~~~~~~~L~~~ 64 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTM----NPRPIIEDLRRA 64 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecC----CHHHHHHHHHHC
Confidence 57788999999999999999999999999876432223333334444432 245777777664
No 64
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.34 E-value=0.0017 Score=48.43 Aligned_cols=34 Identities=15% Similarity=0.302 Sum_probs=31.2
Q ss_pred EEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeec
Q 020508 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFV 77 (325)
Q Consensus 44 ~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~ 77 (325)
.++|..+||||+.+++++.|+++|+||.+...+.
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t 36 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEIST 36 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEec
Confidence 5788999999999999999999999999988754
No 65
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.33 E-value=0.0026 Score=47.46 Aligned_cols=47 Identities=21% Similarity=0.342 Sum_probs=36.6
Q ss_pred EEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEE
Q 020508 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI 91 (325)
Q Consensus 44 ~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~ 91 (325)
.+.|.++||||+.++++++|+.+|+||.+....+. ..|.-.-.+.+.
T Consensus 3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~-~~~~v~D~F~v~ 49 (73)
T cd04900 3 EVFIYTPDRPGLFARIAGALDQLGLNILDARIFTT-RDGYALDTFVVL 49 (73)
T ss_pred EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEe-CCCeEEEEEEEE
Confidence 57899999999999999999999999999887643 234333344443
No 66
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.30 E-value=0.0015 Score=48.48 Aligned_cols=63 Identities=8% Similarity=0.036 Sum_probs=41.2
Q ss_pred EEEEcCCCcchHHHHHHHHHhcCCeEeEeeeecc-CCCCeEEEEEEEEeCCCCCChHHHHHHHHh
Q 020508 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVP-EKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (325)
Q Consensus 45 ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~-~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~ 108 (325)
+++.=+|+||..+++++.|+++|+||.++.+.-. ...+.-...+.+.... +-..+.+.++|++
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~-~~~~~~i~~~L~~ 65 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMD-RSKENELIEELKA 65 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEec-chHHHHHHHHHhC
Confidence 5678899999999999999999999999976532 1233333344444322 1124455555543
No 67
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.28 E-value=0.00053 Score=52.03 Aligned_cols=45 Identities=11% Similarity=0.253 Sum_probs=35.6
Q ss_pred EEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeecc--CCCCeEEEE
Q 020508 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP--EKKNVFYSR 87 (325)
Q Consensus 43 ~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~--~~~g~F~~~ 87 (325)
-+++|.|+||||+.++|+..|+++|.+|....-.+. .-...|+.+
T Consensus 2 TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~ 48 (75)
T cd04897 2 SVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIR 48 (75)
T ss_pred EEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEE
Confidence 378999999999999999999999999998666543 222366643
No 68
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=97.25 E-value=0.0014 Score=47.97 Aligned_cols=59 Identities=20% Similarity=0.168 Sum_probs=47.6
Q ss_pred CCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhh
Q 020508 51 DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (325)
Q Consensus 51 DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~ 111 (325)
|+||++..|+..+..+|.||.+++.......+...+.+.+..++ ...++|...|+++-+
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~--~~i~~l~~Ql~Klid 59 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDD--REIEQLVKQLEKLID 59 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-C--CHHHHHHHHHHCSTT
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCc--hhHHHHHHHHhccCC
Confidence 78999999999999999999999997655677888888887754 468888888887754
No 69
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.24 E-value=0.0023 Score=46.18 Aligned_cols=62 Identities=23% Similarity=0.192 Sum_probs=44.2
Q ss_pred EEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhh
Q 020508 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (325)
Q Consensus 45 ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~ 110 (325)
+++..+|+||+++++++.|+++|+||..+.+.-...++...+. +.+.+ . ...++.++|+++.
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~--i~v~~-~-~~~~~i~~l~~~~ 63 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMV--IEVDQ-P-IDEEVIEEIKKIP 63 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEE--EEeCC-C-CCHHHHHHHHcCC
Confidence 5788999999999999999999999999877421123343333 55555 2 5566667666654
No 70
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=97.22 E-value=0.00065 Score=49.51 Aligned_cols=60 Identities=13% Similarity=0.153 Sum_probs=44.9
Q ss_pred EEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhh
Q 020508 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (325)
Q Consensus 45 ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~ 110 (325)
+.+.+.||||..+++++.|+++|+||..+.... ..+...+.++++.+ ..+++.+.|.++.
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~--~~~~a~~~~~~~~~----~l~~li~~l~~~~ 61 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQT--RGEIGYVVIDIDSE----VSEELLEALRAIP 61 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccC--CCCEEEEEEEcCCC----CCHHHHHHHHcCC
Confidence 567899999999999999999999999886632 23666666666554 3556666665543
No 71
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=97.21 E-value=0.00074 Score=47.52 Aligned_cols=46 Identities=22% Similarity=0.181 Sum_probs=36.2
Q ss_pred EEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEE
Q 020508 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI 91 (325)
Q Consensus 45 ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~ 91 (325)
+++..+|+||.++++++.|+++|+||..+...... .+.-.+++.++
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~-~~~~~~~~~v~ 46 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETR-GEFGILRLIFS 46 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEcc-CCcEEEEEEEC
Confidence 35688999999999999999999999999875432 35555556663
No 72
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=97.18 E-value=0.0032 Score=47.75 Aligned_cols=65 Identities=17% Similarity=0.153 Sum_probs=45.6
Q ss_pred EEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCChHHHHHHHHhhhh
Q 020508 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (325)
Q Consensus 44 ~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~-~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~ 111 (325)
.+++.-+|+||..+++.+.++++|+||..+.+.-.. ..+.+..+++++.. .+.+.+.++++.+.+
T Consensus 3 sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~---~~~~~~~~~l~~l~~ 68 (80)
T cd04905 3 SIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGH---IEDPNVAEALEELKR 68 (80)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECC---CCCHHHHHHHHHHHH
Confidence 456667899999999999999999999999875322 23355555555543 335666666666543
No 73
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.17 E-value=0.0043 Score=46.71 Aligned_cols=35 Identities=11% Similarity=0.066 Sum_probs=31.7
Q ss_pred EEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeec
Q 020508 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV 77 (325)
Q Consensus 43 ~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~ 77 (325)
.++.|.++||||+.++|+++|+++|++|....-.+
T Consensus 2 Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT 36 (72)
T cd04895 2 TLVKVDSARKPGILLEAVQVLTDLDLCITKAYISS 36 (72)
T ss_pred EEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEee
Confidence 47899999999999999999999999999876654
No 74
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=97.10 E-value=0.00099 Score=72.05 Aligned_cols=68 Identities=19% Similarity=0.227 Sum_probs=51.2
Q ss_pred cceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCC--CeEEEEEEEEeCCCCCChHHHHHHHH
Q 020508 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKK--NVFYSRSEFIFDPIKWPREQMDEDFF 107 (325)
Q Consensus 40 ~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~--g~F~~~~~v~~p~~~~~~~~L~~~l~ 107 (325)
....+++|.|+||||++++||++|+++|+||.+.+..+.... ..|++......|..+...+.++++|.
T Consensus 777 ~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~ 846 (850)
T TIGR01693 777 RKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLA 846 (850)
T ss_pred CCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999999999999998875333 48887776666652222344444443
No 75
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=97.09 E-value=0.0036 Score=46.78 Aligned_cols=67 Identities=18% Similarity=0.106 Sum_probs=41.6
Q ss_pred EEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCC-CCeEEEEEEEEeCCCCCChHHHHHHHHhhhh
Q 020508 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEK-KNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (325)
Q Consensus 45 ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~-~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~ 111 (325)
+.+.-+|+||..++|-+.++++|+||..+.+.-... .+.|..-++++........+++-+.|++.+.
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~~~~ 69 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKRVTE 69 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhCC
Confidence 345568999999999999999999999997753222 3334333444332102234445555554443
No 76
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=97.00 E-value=0.0032 Score=45.91 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=41.7
Q ss_pred EEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhh
Q 020508 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (325)
Q Consensus 44 ~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l 109 (325)
.+++.-+|+||..++|++.|+++|+||..+..... .+. ..+.+.. + +.+...+.|.+-
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~--~~~--~~~rl~~-~---~~~~~~~~L~~~ 60 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADT--SEF--GILRLIV-S---DPDKAKEALKEA 60 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEec--CCC--CEEEEEE-C---CHHHHHHHHHHC
Confidence 57788999999999999999999999999987542 222 3344444 2 245666666553
No 77
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.92 E-value=0.0096 Score=45.15 Aligned_cols=33 Identities=12% Similarity=0.158 Sum_probs=30.5
Q ss_pred EEEEEcCCCcchHHHHHHHHHhcCCeEeEeeee
Q 020508 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVF 76 (325)
Q Consensus 44 ~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~ 76 (325)
++.|.++||||+.++|++.|+++|++|....-.
T Consensus 2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~ 34 (75)
T cd04896 2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFS 34 (75)
T ss_pred EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEe
Confidence 688999999999999999999999999987665
No 78
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.89 E-value=0.0044 Score=44.31 Aligned_cols=58 Identities=21% Similarity=0.166 Sum_probs=40.5
Q ss_pred EEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHh
Q 020508 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (325)
Q Consensus 45 ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~ 108 (325)
+++.=+||||.++++++.|+++|+||.++.+......+.- .+.+.+.. .+.+.+.|++
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~--~v~~~ve~----~~~~~~~L~~ 59 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKA--LLIFRTED----IEKAIEVLQE 59 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeE--EEEEEeCC----HHHHHHHHHH
Confidence 6778899999999999999999999998877433212332 23444432 4566666655
No 79
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=96.78 E-value=0.0058 Score=55.23 Aligned_cols=52 Identities=17% Similarity=0.130 Sum_probs=40.3
Q ss_pred eEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeC
Q 020508 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFD 93 (325)
Q Consensus 42 ~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p 93 (325)
...+-+.-.||||+|.+|++.|.++|+||-.++..-....|.=.|.+.++-|
T Consensus 148 g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~~ 199 (208)
T TIGR00719 148 HPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDKN 199 (208)
T ss_pred ccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCCC
Confidence 5566777899999999999999999999999988533334565566666544
No 80
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=96.64 E-value=0.012 Score=39.02 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=30.3
Q ss_pred EEEEcCCCcchHHHHHHHHHhcCCeEeEeeeec
Q 020508 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFV 77 (325)
Q Consensus 45 ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~ 77 (325)
+++.++|++|+.+++++.|+++|+||..+.+..
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~ 33 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRT 33 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEE
Confidence 468899999999999999999999999998854
No 81
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.55 E-value=0.01 Score=43.65 Aligned_cols=61 Identities=11% Similarity=0.046 Sum_probs=41.0
Q ss_pred EEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHh
Q 020508 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (325)
Q Consensus 45 ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~ 108 (325)
+++.=|||||-..++.+.|++ |.||.+++..-.. .+.=...+.+++++ ....+++.++|++
T Consensus 1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~-~~~~~v~v~ie~~~-~~~~~~i~~~L~~ 61 (68)
T cd04885 1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQG-GDEARVLVGIQVPD-REDLAELKERLEA 61 (68)
T ss_pred CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCC-CCceEEEEEEEeCC-HHHHHHHHHHHHH
Confidence 356789999999999999999 9999999875321 22211223445554 3445666666655
No 82
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=96.54 E-value=0.0076 Score=63.93 Aligned_cols=72 Identities=11% Similarity=0.063 Sum_probs=56.3
Q ss_pred cceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcc
Q 020508 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (325)
Q Consensus 40 ~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~ 115 (325)
..+..|.|.+.||+|++++||+++++.++||.++++......+.+.+.+.+++++ .++|..-+..+-.--|+
T Consensus 664 ~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~----~~~L~~l~~~L~~i~~V 735 (743)
T PRK10872 664 GYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYN----LQVLGRVLGKLNQVPDV 735 (743)
T ss_pred eeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECC----HHHHHHHHHHHhcCCCc
Confidence 4677899999999999999999999999999999885433357899999999987 45555555555433333
No 83
>PRK07334 threonine dehydratase; Provisional
Probab=96.52 E-value=0.0095 Score=59.05 Aligned_cols=69 Identities=13% Similarity=0.010 Sum_probs=53.6
Q ss_pred CCCcceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeecc---CCCCeEEEEEEEEeCCCCCChHHHHHHHHhh
Q 020508 37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP---EKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (325)
Q Consensus 37 ~~~~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~---~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l 109 (325)
.....+..|.+.+.||+|++++|++.|++.++||.+++.... ..++...+.+.+++.+ .++|..-+.+|
T Consensus 321 ~~~~y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d----~~~L~~vi~~L 392 (403)
T PRK07334 321 VRAGRLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRD----AAHLQEVIAAL 392 (403)
T ss_pred HhCCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCC----HHHHHHHHHHH
Confidence 335567899999999999999999999999999999987532 1357888888888876 45555544444
No 84
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=96.50 E-value=0.0073 Score=44.24 Aligned_cols=34 Identities=26% Similarity=0.295 Sum_probs=29.6
Q ss_pred eEEEEEEcC----CCcchHHHHHHHHHhcCCeEeEeee
Q 020508 42 HGIHVFHCP----DEVGIVAKLSECIASRGGNILAADV 75 (325)
Q Consensus 42 ~~~ltv~g~----DrpGIVa~Vt~~La~~giNI~~l~~ 75 (325)
-..+++.|+ |.||+++++++.|++.|+||..+++
T Consensus 6 ~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~isS 43 (65)
T PF13840_consen 6 WAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMISS 43 (65)
T ss_dssp EEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEEE
T ss_pred EEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEEE
Confidence 357888888 8999999999999999999999885
No 85
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.30 E-value=0.043 Score=43.03 Aligned_cols=70 Identities=17% Similarity=0.119 Sum_probs=48.6
Q ss_pred EEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhccc
Q 020508 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (325)
Q Consensus 43 ~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~-~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~ 116 (325)
..+.+.-+|+||-.+++=+.++++|+|++.+.+.-.. ..+.|.--++++. . ..+.++.+++.+.+.+++.
T Consensus 15 tslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg---~-~~~~~~~~l~~L~~~~~~~ 85 (90)
T cd04931 15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDK---K-SAPALDPIIKSLRNDIGAT 85 (90)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEc---C-CCHHHHHHHHHHHHHhCCC
Confidence 4444555999999999999999999999999995321 1233332233332 2 2377888888888877665
No 86
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=96.23 E-value=0.017 Score=61.19 Aligned_cols=71 Identities=15% Similarity=0.115 Sum_probs=55.3
Q ss_pred cceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcc
Q 020508 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (325)
Q Consensus 40 ~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~ 115 (325)
..+..|.+.+.||+|++++|+.++++.++||.++++... ..+.+.+.+.+++.+ .++|..-+..+-.--|+
T Consensus 624 ~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~-~~~~~~~~~~ieV~~----~~~L~~i~~~Lr~i~~V 694 (702)
T PRK11092 624 EFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEK-DGRVYSAFIRLTARD----RVHLANIMRKIRVMPDV 694 (702)
T ss_pred eeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEc-CCCEEEEEEEEEECC----HHHHHHHHHHHhCCCCc
Confidence 467789999999999999999999999999999997543 256888999999977 45555555555433333
No 87
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=96.03 E-value=0.021 Score=60.35 Aligned_cols=67 Identities=12% Similarity=0.067 Sum_probs=55.0
Q ss_pred cceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhh
Q 020508 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (325)
Q Consensus 40 ~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~ 111 (325)
..+..|.+.+.||+|++++|+++|++.++||.++++... ..+.+.+.+.+++.+ .++|..-+..+-.
T Consensus 608 ~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~-~~~~~~~~~~ieV~~----~~~L~~ii~~L~~ 674 (683)
T TIGR00691 608 RFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTY-GKREAILNITVEIKN----YKHLLKIMLKIKT 674 (683)
T ss_pred eeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEc-CCCEEEEEEEEEECC----HHHHHHHHHHHhC
Confidence 467789999999999999999999999999999998643 257888899999876 5666666665543
No 88
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=95.87 E-value=0.02 Score=60.16 Aligned_cols=68 Identities=12% Similarity=0.090 Sum_probs=55.7
Q ss_pred CCcceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhh
Q 020508 38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (325)
Q Consensus 38 ~~~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~ 110 (325)
+....+-|.|.+.||+|+.++|+++|++.++||+.+++... .++.+.+.+.+.+.+ ..+|..-+.++-
T Consensus 623 ~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~-~~~~~~~~~~i~v~n----~~~L~~i~~~l~ 690 (701)
T COG0317 623 GQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSD-KDQFATMQFTIEVKN----LNHLGRVLARLK 690 (701)
T ss_pred CcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeecccc-CCceEEEEEEEEECc----HHHHHHHHHHHh
Confidence 34577889999999999999999999999999999999764 567899999999987 455555555443
No 89
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=95.87 E-value=0.02 Score=56.93 Aligned_cols=65 Identities=15% Similarity=0.113 Sum_probs=48.5
Q ss_pred cceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhh
Q 020508 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (325)
Q Consensus 40 ~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~ 110 (325)
...+.|.+.-.|+||++++||+.|+++|+||..++..- ..+.=+|.++++-+. .+++.+.++++.
T Consensus 336 ~~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~--~~~~A~~iie~D~~~----~~~~~~~i~~i~ 400 (409)
T PRK11790 336 PGGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQT--DGEIGYVVIDVDADY----AEEALDALKAIP 400 (409)
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheecc--CCCEEEEEEEeCCCC----cHHHHHHHHcCC
Confidence 36788999999999999999999999999999887743 234444555554322 456777777654
No 90
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=95.85 E-value=0.043 Score=45.81 Aligned_cols=68 Identities=15% Similarity=0.104 Sum_probs=54.5
Q ss_pred ceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhh
Q 020508 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (325)
Q Consensus 41 ~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l 109 (325)
+-+.+.+.-.||.|+.++|=..+|+.++||+.++|.+ |+.|.-...+.++......+.+.+-++|..+
T Consensus 71 ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~i-pl~g~Anvtlsi~~ssm~~~V~~ii~kl~k~ 138 (150)
T COG4492 71 RIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTI-PLQGRANVTLSIDTSSMEKDVDKIIEKLRKV 138 (150)
T ss_pred eEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEeccc-ccCceeeEEEEEEchhhhhhHHHHHHHHhcc
Confidence 5677888899999999999999999999999999976 6788777777777665445566666665554
No 91
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=95.77 E-value=0.057 Score=46.62 Aligned_cols=102 Identities=16% Similarity=0.261 Sum_probs=64.6
Q ss_pred CceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCC--CCCchH----HHHHHHCCCCEEEecCCCChhHHHHHHH
Q 020508 128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDR--GPNSHV----IRFLERHGIPYHYLCAKENEREEELLEL 201 (325)
Q Consensus 128 ~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~--~~~~~~----~~~a~~~gIp~~~~~~~~~~~~~~~~~~ 201 (325)
.+||++++-+.+.....++..+.. ++.+ +-+++.+.- +.+..+ .+.+.+.|-.+.... .+.+.
T Consensus 2 gl~i~~vGD~~~rv~~Sl~~~~~~--~g~~-~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~--------~~~e~ 70 (158)
T PF00185_consen 2 GLKIAYVGDGHNRVAHSLIELLAK--FGME-VVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITD--------DIEEA 70 (158)
T ss_dssp TEEEEEESSTTSHHHHHHHHHHHH--TTSE-EEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEES--------SHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHHH--cCCE-EEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEe--------CHHHh
Confidence 478999886445555666655432 3456 334443320 111123 355666787776543 24456
Q ss_pred hcCCCEEEEeccc----------------cccChhHHhhcCCCEEEEcCCCCCCCCC
Q 020508 202 VQNTDFLVLARYM----------------QILSGKFLRSYGKDVINIHHGLLPSFKG 242 (325)
Q Consensus 202 l~~~Dliv~~g~~----------------~il~~~~l~~~~~~~iNiHpslLP~yRG 242 (325)
++++|++..-.|. +.++.++++..+...+=+|| ||.+||
T Consensus 71 l~~aDvvy~~~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~--LP~~R~ 125 (158)
T PF00185_consen 71 LKGADVVYTDRWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHP--LPANRG 125 (158)
T ss_dssp HTT-SEEEEESSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEES--SS--BT
T ss_pred cCCCCEEEEcCcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeC--CCCCCC
Confidence 7789999999999 89999999988878999998 788888
No 92
>PRK05092 PII uridylyl-transferase; Provisional
Probab=95.71 E-value=0.019 Score=62.84 Aligned_cols=72 Identities=14% Similarity=0.194 Sum_probs=47.6
Q ss_pred ceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCC--CeEEEEEEEEeCCC-CCChHHHHHHHHhhhhh
Q 020508 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKK--NVFYSRSEFIFDPI-KWPREQMDEDFFKLSKM 112 (325)
Q Consensus 41 ~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~--g~F~~~~~v~~p~~-~~~~~~L~~~l~~l~~~ 112 (325)
...++.|.++||||++++|+++|+++|+||.+.+..+.... ..|++.-.-.-+-. +...++++++|.+.-++
T Consensus 842 ~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~ 916 (931)
T PRK05092 842 RFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAE 916 (931)
T ss_pred CeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcC
Confidence 45799999999999999999999999999999988764211 14443221100100 11235677777665543
No 93
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=95.54 E-value=0.12 Score=44.86 Aligned_cols=98 Identities=14% Similarity=0.062 Sum_probs=68.2
Q ss_pred cceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhccccee
Q 020508 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSV 119 (325)
Q Consensus 40 ~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~~~ 119 (325)
.+..++++.-.|.||..+.++.+++.+|.||..+..--....+.=.|.+.+.. + ....+++.+.|+.+-+-+++-+.+
T Consensus 2 ~m~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g-~-~~~~EQi~kQL~kLidV~kV~d~~ 79 (163)
T COG0440 2 PMRRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSG-D-EQVLEQIIKQLNKLIDVLKVLDLT 79 (163)
T ss_pred CceEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcC-C-cchHHHHHHHHHhhccceeEEEcC
Confidence 35678888999999999999999999999999998864333445555555544 2 356899999999988777766533
Q ss_pred eeecCCCCCceEEEEEeCCchH
Q 020508 120 VRVPDIDPKYKVAVLASKQEHC 141 (325)
Q Consensus 120 ~~~~~~~~~~ri~v~~Sg~g~~ 141 (325)
-. ..-.+--..+.++..+..
T Consensus 80 ~~--~~veRel~LiKv~~~~~~ 99 (163)
T COG0440 80 SE--PHVERELALIKVSAEGSE 99 (163)
T ss_pred Cc--chhheeeEEEEEecCccc
Confidence 21 111233455556666654
No 94
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=95.53 E-value=0.057 Score=46.94 Aligned_cols=64 Identities=19% Similarity=0.185 Sum_probs=47.6
Q ss_pred EEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhh
Q 020508 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (325)
Q Consensus 44 ~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~ 110 (325)
-+++....+||...++|..++++|+||+..+|+....+.. +.+..++.. ..+.+.|.+.++...
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~--~~iYmEiEg-i~d~e~l~~~lks~d 67 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEK--ALIYMEIEG-IDDFEKLLERLKSFD 67 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCce--EEEEEEeeC-CCCHHHHHHHhhccc
Confidence 4678889999999999999999999999999987532211 222333344 457888888887753
No 95
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=95.47 E-value=0.097 Score=39.16 Aligned_cols=60 Identities=17% Similarity=0.211 Sum_probs=39.9
Q ss_pred EEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCC-CeEEEEEEEEeCCCCCChHHHHHHHHhhh
Q 020508 46 VFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKK-NVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (325)
Q Consensus 46 tv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~-g~F~~~~~v~~p~~~~~~~~L~~~l~~l~ 110 (325)
.+.-+|+||-.+++=+.++++|+|+..+.+.-.+.. +.|.--++++. . .+.++++++.+.
T Consensus 4 ~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~-~----~~~~~~~l~~L~ 64 (74)
T cd04904 4 IFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEV-D----RGDLDQLISSLR 64 (74)
T ss_pred EEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEc-C----hHHHHHHHHHHH
Confidence 344489999999999999999999999999532222 23332344433 2 244666666654
No 96
>PRK05092 PII uridylyl-transferase; Provisional
Probab=95.32 E-value=0.4 Score=52.65 Aligned_cols=69 Identities=12% Similarity=0.054 Sum_probs=48.6
Q ss_pred ceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCC-----CCChHHHHHHHHhhh
Q 020508 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPI-----KWPREQMDEDFFKLS 110 (325)
Q Consensus 41 ~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~-----~~~~~~L~~~l~~l~ 110 (325)
....++|.++||||+.+.++++|+.+|+||.+.+.++. ..|.-...+.|.-+.. ....+.++++|....
T Consensus 731 ~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~-~dg~alD~F~V~~~~g~~~~~~~~~~~l~~~L~~~l 804 (931)
T PRK05092 731 GVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTT-TDGRALDTFWIQDAFGRDEDEPRRLARLAKAIEDAL 804 (931)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEe-cCCeEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
Confidence 56799999999999999999999999999999987653 2343222244533331 012566777776654
No 97
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=95.27 E-value=0.08 Score=51.92 Aligned_cols=71 Identities=15% Similarity=-0.004 Sum_probs=49.1
Q ss_pred CCcceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeee---ccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhh
Q 020508 38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF---VPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (325)
Q Consensus 38 ~~~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~---~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l 109 (325)
.....+.+++.=+||||..+++++.++++|+||+++... -....+.-...+.++... ..+.+++.++|++.
T Consensus 301 ~~gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~-~~~~~~i~~~L~~~ 374 (380)
T TIGR01127 301 KSGRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRG-KEHLDEILKILRDM 374 (380)
T ss_pred hCCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCC-HHHHHHHHHHHHHc
Confidence 345677999999999999999999999999999999654 111124444445555543 23445666666653
No 98
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=95.25 E-value=0.041 Score=56.50 Aligned_cols=65 Identities=17% Similarity=0.146 Sum_probs=45.3
Q ss_pred eEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhh
Q 020508 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (325)
Q Consensus 42 ~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~ 110 (325)
.+.+-+.-.|+||+|+.|+..|+++++||-.++..-...++.-.|.++++-+- + +++.+++.++.
T Consensus 452 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D~~v---~-~~~l~~i~~~~ 516 (526)
T PRK13581 452 GHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVDDPV---P-EEVLEELRALP 516 (526)
T ss_pred ceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECCCCC---C-HHHHHHHhcCC
Confidence 45556667999999999999999999999998874322345665556664433 3 55555555543
No 99
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=95.22 E-value=0.037 Score=56.83 Aligned_cols=64 Identities=16% Similarity=0.149 Sum_probs=45.1
Q ss_pred eEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhh
Q 020508 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (325)
Q Consensus 42 ~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l 109 (325)
.+.+-+.-.|+||+++.|++.|+++++||-.++..-...++.-.|.++++-+- + +++.+++.++
T Consensus 451 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D~~v---~-~~~l~~i~~~ 514 (525)
T TIGR01327 451 GIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLDQPV---P-DEVLEEIKAI 514 (525)
T ss_pred ccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcCCCC---C-HHHHHHHhcC
Confidence 44556667999999999999999999999988774333345666666665443 3 4555555554
No 100
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=95.20 E-value=0.095 Score=37.95 Aligned_cols=66 Identities=20% Similarity=0.144 Sum_probs=44.4
Q ss_pred EEEEc-CCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcc
Q 020508 45 HVFHC-PDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (325)
Q Consensus 45 ltv~g-~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~ 115 (325)
+++.| +|+||+.+++.+.|+++|+||.-+.+.... .+ .+.+.+.++. .+.+...+.+..+.++++.
T Consensus 4 v~v~~~~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~-~~--~~~is~~v~~--~d~~~~~~~l~~~~~~~~~ 70 (75)
T cd04913 4 ITLRGVPDKPGVAAKIFGALAEANINVDMIVQNVSR-DG--TTDISFTVPK--SDLKKALAVLEKLKKELGA 70 (75)
T ss_pred EEECCCCCCCcHHHHHHHHHHHcCCeEEEEEeCCCC-CC--cEEEEEEecH--HHHHHHHHHHHHHHHHcCc
Confidence 44443 599999999999999999999977764321 22 2455566665 2455566666666555543
No 101
>PRK03381 PII uridylyl-transferase; Provisional
Probab=95.19 E-value=0.099 Score=56.22 Aligned_cols=51 Identities=14% Similarity=0.080 Sum_probs=40.2
Q ss_pred ceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeC
Q 020508 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFD 93 (325)
Q Consensus 41 ~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p 93 (325)
...+++|.++||||++++||++|+++|+||.+.+..+. ++.=.-.+.|.-+
T Consensus 706 ~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~--g~~a~D~F~V~d~ 756 (774)
T PRK03381 706 DATVLEVRAADRPGLLARLARALERAGVDVRWARVATL--GADVVDVFYVTGA 756 (774)
T ss_pred CeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeec--CCeEEEEEEEECC
Confidence 45799999999999999999999999999999988764 4433334444333
No 102
>PRK08818 prephenate dehydrogenase; Provisional
Probab=94.69 E-value=0.13 Score=50.60 Aligned_cols=64 Identities=14% Similarity=0.043 Sum_probs=42.4
Q ss_pred ceEEEEEEcC-CCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHh
Q 020508 41 THGIHVFHCP-DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (325)
Q Consensus 41 ~~~~ltv~g~-DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~ 108 (325)
..+.+.+.=+ |+||.+++|++.|+.+|+||.++.+. ....+.|...+++.- ..+.+.|..+-.+
T Consensus 294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~-~~r~~~y~f~i~~~~---~~~~~~~~~~~~~ 358 (370)
T PRK08818 294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSS-RTPAGELHFRIGFEP---GSDRAALARAAAE 358 (370)
T ss_pred cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEe-cccCceEEEEEEEec---cccHHHHHHHHhh
Confidence 4455555556 99999999999999999999999993 322344443344433 3355655554333
No 103
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.64 E-value=0.25 Score=36.02 Aligned_cols=64 Identities=17% Similarity=0.247 Sum_probs=45.6
Q ss_pred EEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCC---CCChHHHHHHHHhhh
Q 020508 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPI---KWPREQMDEDFFKLS 110 (325)
Q Consensus 44 ~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~---~~~~~~L~~~l~~l~ 110 (325)
++||.|||+.|+=.++.+.+.+.|.+|..-+..+ .|..--.+---+|.. ...-+-|+..|.+.|
T Consensus 2 vitvnCPDktGLgcdlcr~il~fGl~i~rgd~sT---DGkWCyiv~wVv~~~~~~~~rW~lLK~RL~~~C 68 (69)
T cd04894 2 VITINCPDKTGLGCDLCRIILEFGLNITRGDDST---DGRWCYIVFWVVPRPPSIKVRWDLLKNRLMSAC 68 (69)
T ss_pred EEEEeCCCccCcccHHHHHHHHhceEEEeccccc---CCcEEEEEEEEecCCCCCcccHHHHHHHHHhcC
Confidence 6899999999999999999999999999766644 342222233333441 355677887777654
No 104
>PRK06545 prephenate dehydrogenase; Validated
Probab=94.58 E-value=0.099 Score=50.99 Aligned_cols=55 Identities=15% Similarity=0.219 Sum_probs=40.9
Q ss_pred CCcceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCC
Q 020508 38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDP 94 (325)
Q Consensus 38 ~~~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~ 94 (325)
.....|.+.|.-+||||.+++++..|++.|+||.|+.-.-. .+.=...+.+.+.+
T Consensus 286 ~~~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~--~~~~~g~~~~~~~~ 340 (359)
T PRK06545 286 AIPSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEA--REDIHGVLQISFKN 340 (359)
T ss_pred CCCcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeec--cCCcCceEEEEeCC
Confidence 34567889999999999999999999999999999886322 22122344555554
No 105
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=94.42 E-value=0.061 Score=49.64 Aligned_cols=75 Identities=19% Similarity=0.173 Sum_probs=56.4
Q ss_pred cceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhccc
Q 020508 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (325)
Q Consensus 40 ~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~ 116 (325)
..+-++.+.-.|-||++..|+++||.+|.||.++-.-......+|.|.+.+.-.+ .-.++.++.++++-.-+.+.
T Consensus 75 ~krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd--~VveQa~rQiedlVnV~aVl 149 (309)
T KOG2663|consen 75 VKRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTD--GVVEQARRQIEDLVNVYAVL 149 (309)
T ss_pred ccceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEeccH--HHHHHHHHHHHHhhhhheee
Confidence 3456888888899999999999999999999988774434456999888886554 23577777777765444333
No 106
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=94.28 E-value=1.1 Score=37.05 Aligned_cols=122 Identities=16% Similarity=0.165 Sum_probs=71.1
Q ss_pred EEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcccceeeeec
Q 020508 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVP 123 (325)
Q Consensus 44 ~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~~~~~~~ 123 (325)
.+++.-..|||-.+.+++.|.++|+||-.++-. .+|.|- ++..-+|. .++-..+|++. |.. .|..
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiA---dt~dFG-IiRmvV~~----~d~A~~~Lee~----gF~---Vr~~ 69 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIA---DTGDFG-IIRMVVDR----PDEAHSVLEEA----GFT---VRET 69 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEec---cccCcc-eEEEEcCC----hHHHHHHHHHC----CcE---EEee
Confidence 367778899999999999999999999988874 355553 33333444 34445555543 232 4443
Q ss_pred CCCCCceEEEEEeCCchHHHHHHHHhhcCCCCceEE-EEEeCCCCCC------C-chHHHHHHHCCCCEE
Q 020508 124 DIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEIT-CVISNHDRGP------N-SHVIRFLERHGIPYH 185 (325)
Q Consensus 124 ~~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~-~Vvt~~~~~~------~-~~~~~~a~~~gIp~~ 185 (325)
+ =++|=+-.....|-.+++.+.+-.++.+-+ +.++..++.- + ....+..+++||++.
T Consensus 70 d-----VlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed~d~~~~aLed~gi~~~ 134 (142)
T COG4747 70 D-----VLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVEDIDRAIKALEDAGIKLI 134 (142)
T ss_pred e-----EEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhhHHHHHHHHHHHcCCeec
Confidence 3 355555554444555555555444454433 3333322110 1 235666788888875
No 107
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.28 E-value=0.41 Score=36.01 Aligned_cols=60 Identities=22% Similarity=0.250 Sum_probs=40.2
Q ss_pred EEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCC-CeEEEEEEEEeCCCCCChHHHHHHHHhhhh
Q 020508 47 FHCPDEVGIVAKLSECIASRGGNILAADVFVPEKK-NVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (325)
Q Consensus 47 v~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~-g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~ 111 (325)
+.-+|+||-.+++=+.++.+|+|+..+.+.-.... +.|.--++++.. .+.++.+++++.+
T Consensus 5 ~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~-----~~~i~~~l~~l~~ 65 (74)
T cd04929 5 FSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECD-----QRRLDELVQLLKR 65 (74)
T ss_pred EEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC-----HHHHHHHHHHHHH
Confidence 33489999999999999999999999999632222 223222333322 2367777776654
No 108
>PRK11899 prephenate dehydratase; Provisional
Probab=94.27 E-value=0.26 Score=46.61 Aligned_cols=66 Identities=11% Similarity=-0.001 Sum_probs=43.9
Q ss_pred eEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCChHHHHHHHHhhh
Q 020508 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (325)
Q Consensus 42 ~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~-~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~ 110 (325)
+..+.+.-+|+||..+++=+.++.+|+|++.+.+.=.. ..+.|. +-+++.. ..+...++++|+++.
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~--F~id~eg-~~~d~~v~~aL~~l~ 260 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQ--FYADIEG-HPEDRNVALALEELR 260 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEE--EEEEEEC-CCCCHHHHHHHHHHH
Confidence 33344444899999999999999999999999995221 113332 3333333 333466788888875
No 109
>PRK06382 threonine dehydratase; Provisional
Probab=94.17 E-value=0.2 Score=49.73 Aligned_cols=70 Identities=17% Similarity=0.116 Sum_probs=49.0
Q ss_pred CcceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeee-c--cCCCCeEEEEEEEEeCCCCCChHHHHHHHHhh
Q 020508 39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF-V--PEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (325)
Q Consensus 39 ~~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~-~--~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l 109 (325)
......+++.=+||||..+++++.|+++|+||.++... . ....+.-...+.++..+ ....+++.+.|++.
T Consensus 327 ~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~-~~~~~~v~~~L~~~ 399 (406)
T PRK06382 327 LGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRG-QDHLDRILNALREM 399 (406)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCC-HHHHHHHHHHHHHC
Confidence 44577899999999999999999999999999988763 1 11233334455555543 23344677777664
No 110
>PRK08198 threonine dehydratase; Provisional
Probab=93.79 E-value=0.22 Score=49.26 Aligned_cols=74 Identities=16% Similarity=0.033 Sum_probs=48.9
Q ss_pred CCCCCCcceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeecc-C--CCCeEEEEEEEEeCCCCCChHHHHHHHHh
Q 020508 34 SSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP-E--KKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (325)
Q Consensus 34 ~~~~~~~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~-~--~~g~F~~~~~v~~p~~~~~~~~L~~~l~~ 108 (325)
++.......+.+.+.=+||||..+++.+.+++.|+||+++++.-. . ..+.-...+.++..+ ....++|.++|++
T Consensus 319 ~gl~~~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~~-~~~~~~l~~~L~~ 395 (404)
T PRK08198 319 RGLVAAGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETRG-PEHIEEILDALRD 395 (404)
T ss_pred hhhhhcCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeCC-HHHHHHHHHHHHH
Confidence 343445667899999999999999999999999999999988521 1 123333334444433 1234455555444
No 111
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.54 E-value=0.56 Score=38.46 Aligned_cols=63 Identities=5% Similarity=-0.003 Sum_probs=40.9
Q ss_pred EEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCChHHHHHHHHhhh
Q 020508 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (325)
Q Consensus 43 ~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~-~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~ 110 (325)
..+.+.-+|+||-.+++=+.++.+|+|++.+.+.-.. ..+.|.--++++... +.+..+++.+.
T Consensus 42 tSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~~-----~~~~~aL~~L~ 105 (115)
T cd04930 42 ATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVHR-----SDLLQLISSLR 105 (115)
T ss_pred EEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeCH-----HHHHHHHHHHH
Confidence 4444445999999999999999999999999995321 123333224443322 24666666553
No 112
>PRK03059 PII uridylyl-transferase; Provisional
Probab=93.52 E-value=0.41 Score=52.13 Aligned_cols=38 Identities=13% Similarity=0.139 Sum_probs=34.4
Q ss_pred ceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeecc
Q 020508 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP 78 (325)
Q Consensus 41 ~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~ 78 (325)
....+.|.++||||+.++|+++|+.+|+||.+..-++.
T Consensus 785 ~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~ 822 (856)
T PRK03059 785 QYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTL 822 (856)
T ss_pred CEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeec
Confidence 56789999999999999999999999999999877654
No 113
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=93.38 E-value=0.58 Score=35.71 Aligned_cols=68 Identities=9% Similarity=-0.031 Sum_probs=57.2
Q ss_pred ceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhh
Q 020508 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (325)
Q Consensus 41 ~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~ 111 (325)
++|.+++...++||.+..|=++...+|.-+..++.+....+|.-...+.|+.+. +.+-|...|+++=+
T Consensus 2 ~qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s~R---~~~lL~~QLeKl~D 69 (86)
T COG3978 2 MQYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDSDR---SVDLLTSQLEKLYD 69 (86)
T ss_pred ceEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcCCC---ChHHHHHHHHHHcc
Confidence 578999999999999999999999999999999987544467777777776654 68899999988744
No 114
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=93.32 E-value=0.85 Score=49.46 Aligned_cols=102 Identities=13% Similarity=0.116 Sum_probs=72.2
Q ss_pred ceEEEEEEcC---CCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcccc
Q 020508 41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR 117 (325)
Q Consensus 41 ~~~~ltv~g~---DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~ 117 (325)
.-..++++|. ++||+.+++-+.|++.|+||.-++|... . ..+.+-++. .+...++..+-++|-.+.
T Consensus 395 ~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~IsqgsS---e---~~Is~vV~~-----~d~~~al~~LH~~f~~~~ 463 (819)
T PRK09436 395 NLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQGSS---E---RSISVVIDN-----DDATKALRACHQSFFLSD 463 (819)
T ss_pred CEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEeccc---c---ceEEEEEcH-----HHHHHHHHHHHHHHhccc
Confidence 4567899997 8999999999999999999998887432 1 123344443 457777777777773331
Q ss_pred eeeeecCCCCCceEEEEEeCC-chHHHHHHHHh----hcCCCCceEEEEE
Q 020508 118 SVVRVPDIDPKYKVAVLASKQ-EHCLVDFLYGW----QEGKLPVEITCVI 162 (325)
Q Consensus 118 ~~~~~~~~~~~~ri~v~~Sg~-g~~l~~Ll~~~----~~~~l~~~I~~Vv 162 (325)
.+++|++++-|. |..+..+|... +...+..+|++|.
T Consensus 464 ---------~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~ 504 (819)
T PRK09436 464 ---------QVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIA 504 (819)
T ss_pred ---------ccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEE
Confidence 468999999887 78887777542 2224567777764
No 115
>PRK05007 PII uridylyl-transferase; Provisional
Probab=93.15 E-value=0.13 Score=56.11 Aligned_cols=47 Identities=15% Similarity=0.205 Sum_probs=38.0
Q ss_pred cceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeecc--CCCCeEEE
Q 020508 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP--EKKNVFYS 86 (325)
Q Consensus 40 ~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~--~~~g~F~~ 86 (325)
....++.|.++||||+.++|+++|+++|+||....-.+. .-...|+.
T Consensus 806 ~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV 854 (884)
T PRK05007 806 DRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFIL 854 (884)
T ss_pred CCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEE
Confidence 456789999999999999999999999999998766543 22346664
No 116
>PLN02342 ornithine carbamoyltransferase
Probab=92.90 E-value=1.2 Score=43.60 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=33.1
Q ss_pred HHHHhcCCCEEEEecc-----------------ccccChhHHhhcCCCEEEEcCCCCCCCCCC
Q 020508 198 LLELVQNTDFLVLARY-----------------MQILSGKFLRSYGKDVINIHHGLLPSFKGG 243 (325)
Q Consensus 198 ~~~~l~~~Dliv~~g~-----------------~~il~~~~l~~~~~~~iNiHpslLP~yRG~ 243 (325)
+.+.++++|++..-.| .+.+.+++++..+..++-+|| ||.+||-
T Consensus 253 ~~eav~~aDVvy~~~W~s~~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHp--LP~~rg~ 313 (348)
T PLN02342 253 PAEAVKGADVVYTDVWASMGQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHC--LPAERGV 313 (348)
T ss_pred HHHHhCCCCEEEECCccccccchhhHHHHHhccCCccCHHHHhccCCCcEEeCC--CCcCCCc
Confidence 3455567888887643 257888888888778899999 8888774
No 117
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=92.65 E-value=1.3 Score=42.99 Aligned_cols=104 Identities=13% Similarity=0.216 Sum_probs=62.3
Q ss_pred CCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCC-CCchHH----HHHHHCCCCEEEecCCCChhHHHHHHH
Q 020508 127 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRG-PNSHVI----RFLERHGIPYHYLCAKENEREEELLEL 201 (325)
Q Consensus 127 ~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~-~~~~~~----~~a~~~gIp~~~~~~~~~~~~~~~~~~ 201 (325)
+.+||++++-+....+..++..+. .++.++.. ++ |+.. +...+. ++|++.|..+.... ++.+.
T Consensus 154 ~g~kia~vGD~~~~v~~Sl~~~~~--~~g~~v~~-~~-P~~~~~~~~~~~~~~~~~~~~g~~~~~~~--------d~~ea 221 (332)
T PRK04284 154 KDIKFTYVGDGRNNVANALMQGAA--IMGMDFHL-VC-PKELNPDDELLNKCKEIAAETGGKITITD--------DIDEG 221 (332)
T ss_pred CCcEEEEecCCCcchHHHHHHHHH--HcCCEEEE-EC-CccccCCHHHHHHHHHHHHHcCCeEEEEc--------CHHHH
Confidence 357999988653233445554433 23566543 33 3211 122233 55667887775443 23455
Q ss_pred hcCCCEEEEecc------------------ccccChhHHhhcC-CCEEEEcCCCCCCCCCCc
Q 020508 202 VQNTDFLVLARY------------------MQILSGKFLRSYG-KDVINIHHGLLPSFKGGK 244 (325)
Q Consensus 202 l~~~Dliv~~g~------------------~~il~~~~l~~~~-~~~iNiHpslLP~yRG~~ 244 (325)
++++|++..-.| .+.+.+++++..+ ..++-+|| ||.+||-.
T Consensus 222 ~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHp--lP~~r~~e 281 (332)
T PRK04284 222 VKGSDVIYTDVWVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHC--LPSFHDLD 281 (332)
T ss_pred hCCCCEEEECCcccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECC--CCCCCCcc
Confidence 667888888543 4567888888875 37888998 78988763
No 118
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=92.65 E-value=0.59 Score=50.87 Aligned_cols=50 Identities=12% Similarity=0.155 Sum_probs=39.6
Q ss_pred ceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEE
Q 020508 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI 91 (325)
Q Consensus 41 ~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~ 91 (325)
....++|.++||||+.++|+++|+.+|+||.+..-.+. ..|.-.-.+.|.
T Consensus 676 ~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~-~~g~alD~F~V~ 725 (854)
T PRK01759 676 GGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITS-QDGYVLDSFIVT 725 (854)
T ss_pred CeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEc-cCCEEEEEEEEe
Confidence 45588999999999999999999999999999876542 355544455554
No 119
>PRK05007 PII uridylyl-transferase; Provisional
Probab=92.50 E-value=0.64 Score=50.82 Aligned_cols=50 Identities=12% Similarity=0.146 Sum_probs=39.7
Q ss_pred ceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEE
Q 020508 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI 91 (325)
Q Consensus 41 ~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~ 91 (325)
....++|.++||||+.+.|+++|+.+|+||.+..-++. ..|...-.+.|.
T Consensus 700 ~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~-~dg~alD~F~V~ 749 (884)
T PRK05007 700 GGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTS-RDGMAMDTFIVL 749 (884)
T ss_pred CeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEc-CCCeEEEEEEEE
Confidence 46689999999999999999999999999999886643 345544444553
No 120
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=92.47 E-value=0.9 Score=31.42 Aligned_cols=33 Identities=18% Similarity=0.202 Sum_probs=29.4
Q ss_pred EEEEEcC---CCcchHHHHHHHHHhcCCeEeEeeee
Q 020508 44 IHVFHCP---DEVGIVAKLSECIASRGGNILAADVF 76 (325)
Q Consensus 44 ~ltv~g~---DrpGIVa~Vt~~La~~giNI~~l~~~ 76 (325)
.++++|. +++|+++++.+.|+++++++....+.
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~ 37 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQG 37 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcC
Confidence 5788776 89999999999999999999988774
No 121
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=92.23 E-value=0.2 Score=54.42 Aligned_cols=47 Identities=17% Similarity=0.248 Sum_probs=37.8
Q ss_pred cceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeecc--CCCCeEEE
Q 020508 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP--EKKNVFYS 86 (325)
Q Consensus 40 ~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~--~~~g~F~~ 86 (325)
....++.|.++||||+.+.|+++|+++|+||....-.+. .-...|+.
T Consensus 781 ~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv 829 (854)
T PRK01759 781 QEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFIL 829 (854)
T ss_pred CCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEE
Confidence 356799999999999999999999999999998766543 22246663
No 122
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.19 E-value=0.81 Score=34.38 Aligned_cols=32 Identities=13% Similarity=0.099 Sum_probs=27.2
Q ss_pred EEEE--E-cCCCcchHHHHHHHHHhcCCeEeEeee
Q 020508 44 IHVF--H-CPDEVGIVAKLSECIASRGGNILAADV 75 (325)
Q Consensus 44 ~ltv--~-g~DrpGIVa~Vt~~La~~giNI~~l~~ 75 (325)
.+++ . .+++||..++|-+.|+++|+||.-+.|
T Consensus 3 ~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~~ 37 (75)
T cd04932 3 LVTLKSPNMLHAQGFLAKVFGILAKHNISVDLITT 37 (75)
T ss_pred EEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEee
Confidence 4555 2 468899999999999999999998876
No 123
>PRK06349 homoserine dehydrogenase; Provisional
Probab=92.12 E-value=0.86 Score=45.59 Aligned_cols=68 Identities=10% Similarity=-0.061 Sum_probs=48.0
Q ss_pred CcceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhh
Q 020508 39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (325)
Q Consensus 39 ~~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~ 111 (325)
...+|.+.+...|+||..+++++.|+++|+||..+.|... ..+.-.+.+..+. .+..+++++++++.+
T Consensus 345 ~~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~-~~~~~~ivivT~~----~~e~~l~~~i~~L~~ 412 (426)
T PRK06349 345 IESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGA-GGEGAEIVIVTHE----TSEAALRAALAAIEA 412 (426)
T ss_pred hceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccC-CCCceeEEEEEEe----CCHHHHHHHHHHHhc
Confidence 4567999999999999999999999999999999988532 1122222233322 234667776666553
No 124
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=91.76 E-value=2 Score=41.13 Aligned_cols=101 Identities=15% Similarity=0.224 Sum_probs=56.9
Q ss_pred CceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCC-CchHHH-HHHHCCCCEEEecCCCChhHHHHHHHhcCC
Q 020508 128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP-NSHVIR-FLERHGIPYHYLCAKENEREEELLELVQNT 205 (325)
Q Consensus 128 ~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~-~~~~~~-~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 205 (325)
.+||++++.. +..+..++..+.. ++.++. ++.|+... ...+.+ ++++.|..+.... ++.+.++++
T Consensus 152 gl~i~~vGd~-~~v~~Sl~~~l~~--~g~~v~--~~~P~~~~~~~~~~~~~~~~~g~~~~~~~--------d~~~a~~~a 218 (304)
T PRK00779 152 GLKVAWVGDG-NNVANSLLLAAAL--LGFDLR--VATPKGYEPDPEIVEKIAKETGASIEVTH--------DPKEAVKGA 218 (304)
T ss_pred CcEEEEEeCC-CccHHHHHHHHHH--cCCEEE--EECCcccCCCHHHHHHHHHHcCCeEEEEc--------CHHHHhCCC
Confidence 4677777652 2233444443321 345543 22232211 122323 3667776665332 244566688
Q ss_pred CEEEEecc-----------------ccccChhHHhhcCCCEEEEcCCCCCCCCCC
Q 020508 206 DFLVLARY-----------------MQILSGKFLRSYGKDVINIHHGLLPSFKGG 243 (325)
Q Consensus 206 Dliv~~g~-----------------~~il~~~~l~~~~~~~iNiHpslLP~yRG~ 243 (325)
|++..-.| .+.+.+++++..+.+.+-+|| ||.+||-
T Consensus 219 Dvvy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~ivmHp--lP~~R~~ 271 (304)
T PRK00779 219 DVVYTDVWVSMGQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHC--LPAHRGE 271 (304)
T ss_pred CEEEecCccccccchhHHHHHHHhcccCCCHHHHHhcCCCeEEecC--CCccCCC
Confidence 99887643 456777888888778999996 6777653
No 125
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=91.63 E-value=0.87 Score=39.38 Aligned_cols=33 Identities=24% Similarity=0.046 Sum_probs=27.7
Q ss_pred EEEEcCCCcchHHHHHHHHHhcCCeEeEeeeec
Q 020508 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFV 77 (325)
Q Consensus 45 ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~ 77 (325)
+...-.+.|||+|+|++.+|++||+|...-+.-
T Consensus 98 i~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~d 130 (167)
T COG2150 98 IYPEDARYPGILAGVASLIAKRGISIRQIISED 130 (167)
T ss_pred EEeccCCCccHHHHHHHHHHHcCceEEEEecCC
Confidence 334467889999999999999999999877753
No 126
>PRK04374 PII uridylyl-transferase; Provisional
Probab=91.61 E-value=4.8 Score=44.06 Aligned_cols=66 Identities=14% Similarity=0.206 Sum_probs=47.5
Q ss_pred ceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCC---ChHHHHHHHHh
Q 020508 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKW---PREQMDEDFFK 108 (325)
Q Consensus 41 ~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~---~~~~L~~~l~~ 108 (325)
....++|.++||||+.+.++.+|+.+|+||.+.+.++. ..|.-.-.+.|.-|. +. ..+.++.+|..
T Consensus 689 ~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~-~~g~~ld~f~V~~~~-~~~~~~~~~i~~~l~~ 757 (869)
T PRK04374 689 DALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDA-PHDAIFDVFEVLPQD-TYADGDPQRLAAALRQ 757 (869)
T ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEc-CCCEEEEEEEEeCCC-CCChHHHHHHHHHHHH
Confidence 45688999999999999999999999999999888753 345444455554443 22 23446666655
No 127
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.55 E-value=1.3 Score=33.96 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=27.0
Q ss_pred EEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeee
Q 020508 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVF 76 (325)
Q Consensus 43 ~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~ 76 (325)
.++.+.=|||||-.+++.+.|+ +.||.+....
T Consensus 2 ~vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~ 33 (85)
T cd04906 2 ALLAVTIPERPGSFKKFCELIG--PRNITEFNYR 33 (85)
T ss_pred eEEEEecCCCCcHHHHHHHHhC--CCceeEEEEE
Confidence 3678889999999999999999 7788876664
No 128
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=91.32 E-value=0.81 Score=50.12 Aligned_cols=52 Identities=13% Similarity=0.073 Sum_probs=40.5
Q ss_pred ceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeC
Q 020508 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFD 93 (325)
Q Consensus 41 ~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p 93 (325)
....++|.++||||+.++++.+|+.+|.||.+.+-++. ..|...-.+.|.-+
T Consensus 703 ~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt-~dg~alD~F~V~d~ 754 (895)
T PRK00275 703 GGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITS-SSQFTLDTYIVLDD 754 (895)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEc-CCCeEEEEEEEeCC
Confidence 35588999999999999999999999999999887543 34554445555433
No 129
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=91.18 E-value=1.2 Score=41.98 Aligned_cols=65 Identities=17% Similarity=0.180 Sum_probs=45.1
Q ss_pred eEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCC---CeEEEEEEEEeCCCCCChHHHHHHHHhhhh
Q 020508 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKK---NVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (325)
Q Consensus 42 ~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~---g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~ 111 (325)
+-.+-+.-+|+||-..++=..|+.+|+|...+.+. |.. +.|. +-+++.. ..+...++++|+++..
T Consensus 194 kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESR--P~k~~~~~Y~--F~iD~eg-~~~~~~v~~AL~el~~ 261 (279)
T COG0077 194 KTSLIFSVPNKPGALYKALGVFAKRGINLTKIESR--PLKTGLGEYL--FFIDIEG-HIDDPLVKEALEELKE 261 (279)
T ss_pred eEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeec--ccCCCCeeEE--EEEEEec-CcCcHhHHHHHHHHHh
Confidence 33444445599999999999999999999999995 323 2333 3333333 3444788888888753
No 130
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=91.06 E-value=1.6 Score=31.36 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=28.2
Q ss_pred EEEEEEcC---CCcchHHHHHHHHHhcCCeEeEeee
Q 020508 43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADV 75 (325)
Q Consensus 43 ~~ltv~g~---DrpGIVa~Vt~~La~~giNI~~l~~ 75 (325)
..++++|. ++||+.+++-+.|++.|+|+.-..+
T Consensus 2 ~~isvvG~~~~~~~gi~~~if~aL~~~~I~v~~~~~ 37 (64)
T cd04937 2 AKVTIIGSRIRGVPGVMAKIVGALSKEGIEILQTAD 37 (64)
T ss_pred eEEEEECCCccCCcCHHHHHHHHHHHCCCCEEEEEc
Confidence 35788897 8999999999999999999974443
No 131
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.00 E-value=0.8 Score=48.94 Aligned_cols=45 Identities=20% Similarity=0.301 Sum_probs=37.4
Q ss_pred ceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeec--cCCCCeEE
Q 020508 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV--PEKKNVFY 85 (325)
Q Consensus 41 ~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~--~~~~g~F~ 85 (325)
..+++++.|.||||+.++|++.|++++.+|...+-++ +.-...|+
T Consensus 790 ~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~ 836 (867)
T COG2844 790 DKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFI 836 (867)
T ss_pred CceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEE
Confidence 5889999999999999999999999999999866654 33334665
No 132
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=90.80 E-value=1.1 Score=44.29 Aligned_cols=67 Identities=4% Similarity=-0.048 Sum_probs=43.8
Q ss_pred eEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeecc-CCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhh
Q 020508 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP-EKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (325)
Q Consensus 42 ~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~-~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~ 111 (325)
+..+.+.-+|+||-.+++=+.|+.+|+|+..+.+.=. ...+.|. +-+++.. ......++++|+.+.+
T Consensus 297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~--Ffid~eg-~~~d~~~~~aL~~l~~ 364 (386)
T PRK10622 297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEM--FYLDVQA-NLRSAEMQKALKELGE 364 (386)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEE--EEEEEeC-CCCCHHHHHHHHHHHH
Confidence 3334444479999999999999999999999999521 1123332 2333333 3334567888777643
No 133
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=90.80 E-value=2.4 Score=41.10 Aligned_cols=103 Identities=13% Similarity=0.225 Sum_probs=61.5
Q ss_pred CCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCC-CCchH----HHHHHHCCCCEEEecCCCChhHHHHHHH
Q 020508 127 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRG-PNSHV----IRFLERHGIPYHYLCAKENEREEELLEL 201 (325)
Q Consensus 127 ~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~-~~~~~----~~~a~~~gIp~~~~~~~~~~~~~~~~~~ 201 (325)
+.+||++++-+.-.....++..+.. ++.++. +++ |+.. +...+ .+++++.|..+...+ ++.+.
T Consensus 155 ~gl~ia~vGD~~~~v~~Sl~~~~~~--~g~~v~-~~~-P~~~~p~~~~~~~~~~~~~~~g~~~~~~~--------d~~~a 222 (334)
T PRK01713 155 SEISYVYIGDARNNMGNSLLLIGAK--LGMDVR-ICA-PKALLPEASLVEMCEKFAKESGARITVTD--------DIDKA 222 (334)
T ss_pred CCcEEEEECCCccCHHHHHHHHHHH--cCCEEE-EEC-CchhcCCHHHHHHHHHHHHHcCCeEEEEc--------CHHHH
Confidence 3579999876522244555554432 356655 344 3321 12222 355666788776443 24456
Q ss_pred hcCCCEEEEecc------------------ccccChhHHhhc-CCCEEEEcCCCCCCCCCC
Q 020508 202 VQNTDFLVLARY------------------MQILSGKFLRSY-GKDVINIHHGLLPSFKGG 243 (325)
Q Consensus 202 l~~~Dliv~~g~------------------~~il~~~~l~~~-~~~~iNiHpslLP~yRG~ 243 (325)
++++|++..-.| .+.+.+++++.. +..++-+|| ||.+||.
T Consensus 223 ~~~aDvVyt~~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~--lP~~~~~ 281 (334)
T PRK01713 223 VKGVDFVHTDVWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHC--LPAFHNS 281 (334)
T ss_pred hCCCCEEEEcceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECC--CCCCCCc
Confidence 668888887543 334777888875 567888998 7898875
No 134
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=90.76 E-value=1.2 Score=48.84 Aligned_cols=49 Identities=10% Similarity=0.059 Sum_probs=38.8
Q ss_pred ceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEE
Q 020508 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI 91 (325)
Q Consensus 41 ~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~ 91 (325)
....+.|.++||||+.++|+++|+++|+||.+..-.+. ++.-.-.+.|.
T Consensus 813 ~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~--g~~v~D~F~V~ 861 (895)
T PRK00275 813 PVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATL--GERVEDVFFIT 861 (895)
T ss_pred CeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEec--CCEEEEEEEEE
Confidence 45689999999999999999999999999999887654 44333344443
No 135
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=90.72 E-value=1.8 Score=30.55 Aligned_cols=45 Identities=18% Similarity=0.124 Sum_probs=34.2
Q ss_pred EEEEEcC---CCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCC
Q 020508 44 IHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDP 94 (325)
Q Consensus 44 ~ltv~g~---DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~ 94 (325)
.++++|. +.+|+.+++.+.|+++|+|+.-+.+.. ++ ..+.+.+++
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~---s~---~~is~~v~~ 50 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS---SE---RNISAVIDE 50 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC---cc---cEEEEEEeH
Confidence 5778884 889999999999999999998887632 22 345555554
No 136
>PRK03059 PII uridylyl-transferase; Provisional
Probab=90.67 E-value=8.5 Score=42.10 Aligned_cols=67 Identities=12% Similarity=0.114 Sum_probs=46.6
Q ss_pred ceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCC----hHHHHHHHHh
Q 020508 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWP----REQMDEDFFK 108 (325)
Q Consensus 41 ~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~----~~~L~~~l~~ 108 (325)
....++|.++||||+-+.++.+|+.+|.||.+.+-++. ..|.-.-.+.|.-|..... .+.++.+|.+
T Consensus 677 ~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~-~~g~~ld~f~V~~~~~~~~~~~~~~~i~~~l~~ 747 (856)
T PRK03059 677 EGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTT-RHGYALDTFQVLDPEEDVHYRDIINLVEHELAE 747 (856)
T ss_pred CeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEc-CCCeEEEEEEEeCCCCCCChHHHHHHHHHHHHH
Confidence 45688999999999999999999999999999887653 3454334455543431211 3445555554
No 137
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=90.61 E-value=2.9 Score=45.36 Aligned_cols=101 Identities=3% Similarity=0.004 Sum_probs=71.0
Q ss_pred ceEEEEEEcC---CCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcccc
Q 020508 41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR 117 (325)
Q Consensus 41 ~~~~ltv~g~---DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~ 117 (325)
.-.+++++|. .++|+.+++-+.|++.++|++...+ +.. .+.+-+++ ++..+++..+-++|-.+
T Consensus 390 ~~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii~~~~-----s~~---sis~vV~~-----~d~~~av~~LH~~f~~~- 455 (810)
T PRK09466 390 GLALVALVGAGVTRNPLHCHRFYQQLKDQPVEFIWQSE-----DGL---SLVAVLRQ-----GPTESLIQGLHQSLFRA- 455 (810)
T ss_pred CeEEEEEeCCCcccCccHHHHHHHHHHhCCCcEEEEeC-----CCc---EEEEEEeh-----HHHHHHHHHHHHHHhCc-
Confidence 3557999996 6899999999999999999986655 222 34444444 66777888887777222
Q ss_pred eeeeecCCCCCceEEEEEeCC-chHHHHHHHHhh-----cCCCCceEEEEEe
Q 020508 118 SVVRVPDIDPKYKVAVLASKQ-EHCLVDFLYGWQ-----EGKLPVEITCVIS 163 (325)
Q Consensus 118 ~~~~~~~~~~~~ri~v~~Sg~-g~~l~~Ll~~~~-----~~~l~~~I~~Vvt 163 (325)
.+..+|++++-|. |..+..+|...+ .-.+..+|++|..
T Consensus 456 --------~~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~ 499 (810)
T PRK09466 456 --------EKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVD 499 (810)
T ss_pred --------CceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEe
Confidence 1468999999886 788877776522 1234577788754
No 138
>PRK08526 threonine dehydratase; Provisional
Probab=90.60 E-value=1 Score=44.75 Aligned_cols=41 Identities=15% Similarity=0.130 Sum_probs=36.3
Q ss_pred CCCCcceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeee
Q 020508 36 VSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF 76 (325)
Q Consensus 36 ~~~~~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~ 76 (325)
.......+.+.+.=|||||-.+++++.+++.+.||.++...
T Consensus 320 l~~~~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~ 360 (403)
T PRK08526 320 LIKSYRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYD 360 (403)
T ss_pred HHhcCCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEE
Confidence 34456788999999999999999999999999999999884
No 139
>PRK04374 PII uridylyl-transferase; Provisional
Probab=90.56 E-value=1.5 Score=47.79 Aligned_cols=38 Identities=13% Similarity=0.171 Sum_probs=34.7
Q ss_pred ceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeecc
Q 020508 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP 78 (325)
Q Consensus 41 ~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~ 78 (325)
...+++|.+.||||+.++|+++|+++|+||.+..-.+.
T Consensus 795 ~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~ 832 (869)
T PRK04374 795 RRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATF 832 (869)
T ss_pred CeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEec
Confidence 56799999999999999999999999999999887654
No 140
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.44 E-value=2 Score=30.47 Aligned_cols=45 Identities=16% Similarity=0.141 Sum_probs=34.5
Q ss_pred EEEEEcC---CCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCC
Q 020508 44 IHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDP 94 (325)
Q Consensus 44 ~ltv~g~---DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~ 94 (325)
.++++|. +++|+.+++-+.|+++|+|+.-+.+.. ++ ..+.+.++.
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~---s~---~~isf~v~~ 50 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA---SE---INISCVIDE 50 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC---cc---ceEEEEEeH
Confidence 5778887 789999999999999999998887732 22 445555554
No 141
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=89.95 E-value=3.1 Score=40.42 Aligned_cols=100 Identities=15% Similarity=0.203 Sum_probs=58.4
Q ss_pred CceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCC-CCchHHHH----HHHCCCCEEEecCCCChhHHHHHHHh
Q 020508 128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRG-PNSHVIRF----LERHGIPYHYLCAKENEREEELLELV 202 (325)
Q Consensus 128 ~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~-~~~~~~~~----a~~~gIp~~~~~~~~~~~~~~~~~~l 202 (325)
.+||++++-++ ..+..++..+. .++.++.. +.|+.. .+..+.+. |++.|..+.... ++.+.+
T Consensus 154 glkv~~vGD~~-~v~~Sl~~~~~--~~g~~v~~--~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~--------d~~eav 220 (338)
T PRK02255 154 DCKVVFVGDAT-QVCVSLMFIAT--KMGMDFVH--FGPKGYQLPEEHLAIAEENCEVSGGSVLVTD--------DVDEAV 220 (338)
T ss_pred CCEEEEECCCc-hHHHHHHHHHH--hCCCEEEE--ECCCccccCHHHHHHHHHHHHhcCCeEEEEc--------CHHHHh
Confidence 57888887543 23344444432 24555432 333321 12234433 445676665432 234566
Q ss_pred cCCCEEEEeccc-------------------cccChhHHhhcCCCEEEEcCCCCCCCCC
Q 020508 203 QNTDFLVLARYM-------------------QILSGKFLRSYGKDVINIHHGLLPSFKG 242 (325)
Q Consensus 203 ~~~Dliv~~g~~-------------------~il~~~~l~~~~~~~iNiHpslLP~yRG 242 (325)
+++|++..-.|. +.+.+++++..+.+++-+|| ||.+||
T Consensus 221 ~~aDvvy~~~w~~~~~~~~~~~~r~~~~~~~y~v~~ell~~a~~~~ivmHp--LP~~Rg 277 (338)
T PRK02255 221 KDADFVYTDVWYGLYDAELSEEERMAIFYPKYQVTPELMAKAGPHAKFMHC--LPATRG 277 (338)
T ss_pred CCCCEEEEcccHhhccchhhHHHHHHhhCCCceECHHHHhccCCCCEEeCC--CCCcCC
Confidence 678888874432 67888888888888999998 677776
No 142
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.65 E-value=2.6 Score=29.68 Aligned_cols=46 Identities=9% Similarity=0.156 Sum_probs=34.8
Q ss_pred EEEEEEcC---CCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCC
Q 020508 43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDP 94 (325)
Q Consensus 43 ~~ltv~g~---DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~ 94 (325)
..++++|. +++|+.+++-+.|+++|+|+.-+.+.. ++ ..+.+.+|.
T Consensus 2 ~~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~---s~---~~isf~i~~ 50 (66)
T cd04924 2 AVVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGS---SE---YNISFVVAE 50 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC---cc---ceEEEEEeH
Confidence 35778886 889999999999999999998887732 12 345555554
No 143
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=89.60 E-value=0.91 Score=46.61 Aligned_cols=32 Identities=16% Similarity=0.361 Sum_probs=30.2
Q ss_pred EEEEEcCCCcchHHHHHHHHHhcCCeEeEeee
Q 020508 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADV 75 (325)
Q Consensus 44 ~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~ 75 (325)
.+.|+|.||.||+.+|.+.|+.+++|+..+..
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~ 33 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEI 33 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEE
Confidence 57899999999999999999999999998887
No 144
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=89.55 E-value=4 Score=39.02 Aligned_cols=100 Identities=13% Similarity=0.248 Sum_probs=56.4
Q ss_pred CceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCC-CchH----HHHHHHCCCCEEEecCCCChhHHHHHHHh
Q 020508 128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP-NSHV----IRFLERHGIPYHYLCAKENEREEELLELV 202 (325)
Q Consensus 128 ~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~-~~~~----~~~a~~~gIp~~~~~~~~~~~~~~~~~~l 202 (325)
.+||++++-. ...+..++..+.. ++.++. ++.|+... ...+ .+++++.|..+.... ++.+.+
T Consensus 148 g~~v~~vGd~-~~v~~Sl~~~l~~--~g~~v~--~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~--------d~~~a~ 214 (304)
T TIGR00658 148 GVKVVYVGDG-NNVCNSLMLAGAK--LGMDVV--VATPEGYEPDADIVKKAQEIAKENGGSVELTH--------DPVEAV 214 (304)
T ss_pred CcEEEEEeCC-CchHHHHHHHHHH--cCCEEE--EECCchhcCCHHHHHHHHHHHHHcCCeEEEEc--------CHHHHh
Confidence 4678877643 2233444443321 345543 22232211 1222 233566676655432 234556
Q ss_pred cCCCEEEEecc-----------------ccccChhHHhhcCCCEEEEcCCCCCCCCC
Q 020508 203 QNTDFLVLARY-----------------MQILSGKFLRSYGKDVINIHHGLLPSFKG 242 (325)
Q Consensus 203 ~~~Dliv~~g~-----------------~~il~~~~l~~~~~~~iNiHpslLP~yRG 242 (325)
+++|++..-.| .+.+.+++++..+.+++-+|| ||.+||
T Consensus 215 ~~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHp--lP~~rg 269 (304)
T TIGR00658 215 KGADVIYTDVWVSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHC--LPAHRG 269 (304)
T ss_pred CCCCEEEEcCcccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECC--CCCCCC
Confidence 68888887543 347888888888888999998 678775
No 145
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=89.44 E-value=3.9 Score=39.07 Aligned_cols=159 Identities=14% Similarity=0.103 Sum_probs=87.3
Q ss_pred hHHHHHHHHHhcCCeEeEeeeeccCCCC---eEEEEEEEEe-CCCCCChHHHHHHHHhhhhhhcccceeeeecCCCCCce
Q 020508 55 IVAKLSECIASRGGNILAADVFVPEKKN---VFYSRSEFIF-DPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYK 130 (325)
Q Consensus 55 IVa~Vt~~La~~giNI~~l~~~~~~~~g---~F~~~~~v~~-p~~~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~~~~~r 130 (325)
-|.+.+++|... ++++=+.......-. .+.-.=.+.. ......+.|.-.++..+-+.+| .-+.+|
T Consensus 84 si~Dta~vls~y-~D~iviR~~~~~~~~~~a~~s~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g----------~l~g~~ 152 (301)
T TIGR00670 84 TLADTIKTLSGY-SDAIVIRHPLEGAARLAAEVSEVPVINAGDGSNQHPTQTLLDLYTIYEEFG----------RLDGLK 152 (301)
T ss_pred CHHHHHHHHHHh-CCEEEEECCchhHHHHHHhhCCCCEEeCCCCCCCCcHHHHHHHHHHHHHhC----------CCCCCE
Confidence 577777888777 777766654210000 1110111111 0101234444444444544443 113589
Q ss_pred EEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCC-CCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCCEE
Q 020508 131 VAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRG-PNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFL 208 (325)
Q Consensus 131 i~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~-~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dli 208 (325)
|++++-+. +..+..++..+.. ++.++. ++.|+.. .+..+.+.|+++|..+...+ ++.+.++++|++
T Consensus 153 va~vGD~~~~~v~~Sl~~~~a~--~g~~v~--~~~P~~~~~~~~~~~~~~~~G~~v~~~~--------d~~~a~~~aDvv 220 (301)
T TIGR00670 153 IALVGDLKYGRTVHSLAEALTR--FGVEVY--LISPEELRMPKEILEELKAKGIKVRETE--------SLEEVIDEADVL 220 (301)
T ss_pred EEEEccCCCCcHHHHHHHHHHH--cCCEEE--EECCccccCCHHHHHHHHHcCCEEEEEC--------CHHHHhCCCCEE
Confidence 99988764 3334555554432 355543 3334322 23456778888888876543 244556688888
Q ss_pred EEecc----------------ccccChhHHhhcCCCEEEEcCCC
Q 020508 209 VLARY----------------MQILSGKFLRSYGKDVINIHHGL 236 (325)
Q Consensus 209 v~~g~----------------~~il~~~~l~~~~~~~iNiHpsl 236 (325)
..-.| .+.+.+++++..+.+.+-+||.+
T Consensus 221 yt~~~~~er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHclP 264 (301)
T TIGR00670 221 YVTRIQKERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHPLP 264 (301)
T ss_pred EECCccccccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECCCC
Confidence 77644 44566788887777888899866
No 146
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=89.36 E-value=1.9 Score=32.04 Aligned_cols=32 Identities=19% Similarity=0.184 Sum_probs=27.1
Q ss_pred EEEEEc---CCCcchHHHHHHHHHhcCCeEeEeee
Q 020508 44 IHVFHC---PDEVGIVAKLSECIASRGGNILAADV 75 (325)
Q Consensus 44 ~ltv~g---~DrpGIVa~Vt~~La~~giNI~~l~~ 75 (325)
.+++.| .+.+|+++++-+.|+++|+|+.-+.+
T Consensus 3 ~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~~ 37 (75)
T cd04912 3 LLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIST 37 (75)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEEc
Confidence 466655 57899999999999999999987765
No 147
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=88.85 E-value=2.2 Score=46.39 Aligned_cols=42 Identities=21% Similarity=0.209 Sum_probs=35.9
Q ss_pred cceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCC
Q 020508 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKN 82 (325)
Q Consensus 40 ~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g 82 (325)
.....++|.++||||+.+.|+.+|+.+|+||.+.+-++. .+|
T Consensus 666 ~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt-~~g 707 (850)
T TIGR01693 666 SGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTT-KDG 707 (850)
T ss_pred CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEe-cCC
Confidence 356689999999999999999999999999999887643 245
No 148
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=88.75 E-value=0.83 Score=44.48 Aligned_cols=52 Identities=12% Similarity=0.165 Sum_probs=34.3
Q ss_pred CCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEE
Q 020508 127 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYH 185 (325)
Q Consensus 127 ~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~ 185 (325)
+++||+|++++.|.....-+... +. ++++++|+.... ....++|+++|||++
T Consensus 2 ~~~rVgViG~~~G~~h~~al~~~--~~-~~eLvaV~d~~~----erA~~~A~~~gi~~y 53 (343)
T TIGR01761 2 DVQSVVVCGTRFGQFYLAAFAAA--PE-RFELAGILAQGS----ERSRALAHRLGVPLY 53 (343)
T ss_pred CCcEEEEEeHHHHHHHHHHHHhC--CC-CcEEEEEEcCCH----HHHHHHHHHhCCCcc
Confidence 46899999986654332222221 21 478998887542 356889999999954
No 149
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=88.58 E-value=2 Score=42.75 Aligned_cols=73 Identities=7% Similarity=-0.023 Sum_probs=49.0
Q ss_pred CCCCcceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhh
Q 020508 36 VSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (325)
Q Consensus 36 ~~~~~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l 109 (325)
.......+.+.+.=|||||-.+++.+.+.+.+.||.+++..-....+.=...+.+++++ ....+++.++|++.
T Consensus 319 l~~~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~~~-~~h~~~i~~~L~~~ 391 (409)
T TIGR02079 319 LLYEGLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIELND-KEDFAGLLERMAAA 391 (409)
T ss_pred HHhcCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEeCC-HHHHHHHHHHHHHC
Confidence 34456678999999999999999999777888899988875211122222334455554 33456666666553
No 150
>PRK08639 threonine dehydratase; Validated
Probab=88.23 E-value=2.1 Score=42.66 Aligned_cols=73 Identities=5% Similarity=0.008 Sum_probs=49.2
Q ss_pred CCCCcceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhh
Q 020508 36 VSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (325)
Q Consensus 36 ~~~~~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l 109 (325)
.......+.+++.=|||||-..++.+.+.+.+.||.+++..-....+.=...+.+++++ ....+++.++|++.
T Consensus 330 l~~~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE~~~-~~h~~~i~~~L~~~ 402 (420)
T PRK08639 330 LIYEGLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIELKD-AEDYDGLIERMEAF 402 (420)
T ss_pred HHhcCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEEeCC-HHHHHHHHHHHHHC
Confidence 34456678999999999999999999777777799999774211111113345566665 33456666766653
No 151
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=87.90 E-value=5.1 Score=36.61 Aligned_cols=113 Identities=20% Similarity=0.199 Sum_probs=64.8
Q ss_pred ceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCC--------c-hHHHHHHHCCCCEEEecCCC-Ch-hHHH
Q 020508 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPN--------S-HVIRFLERHGIPYHYLCAKE-NE-REEE 197 (325)
Q Consensus 129 ~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~--------~-~~~~~a~~~gIp~~~~~~~~-~~-~~~~ 197 (325)
+|+++|.||..=...++..+.+. +++|..+++-.+...+ . -+...|+..|||+....... .. .-++
T Consensus 1 mk~~aL~SGGKDS~~Al~~a~~~---G~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~~g~~e~eve~ 77 (223)
T COG2102 1 MKVIALYSGGKDSFYALYLALEE---GHEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFDTSGEEEREVEE 77 (223)
T ss_pred CcEEEEEecCcHHHHHHHHHHHc---CCeeEEEEEEecCCCCeeeeeccchHHHHHHHHhcCCceEEEecCccchhhHHH
Confidence 47888888864334556666655 4788877665543221 1 25667899999998776322 11 2245
Q ss_pred HHHHhc--CCCEEEEeccccccCh-------hHHhhcCCCEEEEcCCCCCCCCCCcHHHHH---HHhCC
Q 020508 198 LLELVQ--NTDFLVLARYMQILSG-------KFLRSYGKDVINIHHGLLPSFKGGKPAKQA---FDAGV 254 (325)
Q Consensus 198 ~~~~l~--~~Dliv~~g~~~il~~-------~~l~~~~~~~iNiHpslLP~yRG~~pi~~a---i~~G~ 254 (325)
+.+.|+ ++|.+++-. |.+. .+++. .|+.-++|= .|.+|...+ +.+|-
T Consensus 78 L~~~l~~l~~d~iv~Ga---I~s~yqk~rve~lc~~--lGl~~~~PL-----Wg~d~~ell~e~~~~Gf 136 (223)
T COG2102 78 LKEALRRLKVDGIVAGA---IASEYQKERVERLCEE--LGLKVYAPL-----WGRDPEELLEEMVEAGF 136 (223)
T ss_pred HHHHHHhCcccEEEEch---hhhHHHHHHHHHHHHH--hCCEEeecc-----cCCCHHHHHHHHHHcCC
Confidence 666665 677777643 3332 23333 356555553 467764433 45554
No 152
>PRK11898 prephenate dehydratase; Provisional
Probab=87.42 E-value=3.4 Score=39.07 Aligned_cols=67 Identities=15% Similarity=0.073 Sum_probs=41.8
Q ss_pred eEEEEEEcC-CCcchHHHHHHHHHhcCCeEeEeeeeccCC-CCeEEEEEEEEeCCCCCChHHHHHHHHhhhh
Q 020508 42 HGIHVFHCP-DEVGIVAKLSECIASRGGNILAADVFVPEK-KNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (325)
Q Consensus 42 ~~~ltv~g~-DrpGIVa~Vt~~La~~giNI~~l~~~~~~~-~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~ 111 (325)
+..+.+.-+ |+||-.+++=+.++++|+|++.+.+.=.+. .+.|.--++++. ..+...++++|+.+.+
T Consensus 196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg---~~~~~~~~~al~~L~~ 264 (283)
T PRK11898 196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEG---HIDDVLVAEALKELEA 264 (283)
T ss_pred eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEc---cCCCHHHHHHHHHHHH
Confidence 344445554 569999999999999999999999952111 122332233333 2233467777766643
No 153
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=87.11 E-value=19 Score=40.23 Aligned_cols=160 Identities=16% Similarity=0.140 Sum_probs=82.1
Q ss_pred eEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCC-CCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcccceee
Q 020508 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEK-KNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVV 120 (325)
Q Consensus 42 ~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~-~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~~~~ 120 (325)
..-++-+--|. |++.++=+.+-..|+...=....+.+. ...=+..+++..++ ...++++.+.|..++ +...+..
T Consensus 463 ~v~l~ghl~d~-~lin~~ld~i~~~gg~~~~~~~~~gqs~~~~S~~~l~v~a~d-~~~L~~i~~~l~~la---~~~~~~~ 537 (1042)
T PLN02819 463 LVSLSGHLFDK-FLINEALDVIEAAGGSFHLAKCQVGQSADAESYSELEVGADD-KEVLDQIIDSLTRLA---NPNEDYI 537 (1042)
T ss_pred EEEeeeecccc-hhhhhhhhhhhccCCceeeeeeccccCcccccceeeecccCc-HHHHHHHHHHHHHhc---ccccccc
Confidence 34444444466 999999998888877655444433211 12333455665544 333444444444444 2222110
Q ss_pred -----------------------e-ecCCCCCceEEEEEeCC-chHHHHHHHHhhc-------CCCCceEEEEEeCCCCC
Q 020508 121 -----------------------R-VPDIDPKYKVAVLASKQ-EHCLVDFLYGWQE-------GKLPVEITCVISNHDRG 168 (325)
Q Consensus 121 -----------------------~-~~~~~~~~ri~v~~Sg~-g~~l~~Ll~~~~~-------~~l~~~I~~Vvt~~~~~ 168 (325)
+ .....+++||+|+++|. |+.....|....+ ++-...+..+|++..
T Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~-- 615 (1042)
T PLN02819 538 SPAREANKIFLKIGKVQQENECNEKAEVTKKSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLY-- 615 (1042)
T ss_pred ccchhhhhhhhhhhcccccccccccccccccCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCC--
Confidence 0 01123478999999986 5554444433111 000011223345543
Q ss_pred CCchHHHHHHHC-CCCEEEecCCCChhHHHHHHHhcCCCEEEEec
Q 020508 169 PNSHVIRFLERH-GIPYHYLCAKENEREEELLELVQNTDFLVLAR 212 (325)
Q Consensus 169 ~~~~~~~~a~~~-gIp~~~~~~~~~~~~~~~~~~l~~~Dliv~~g 212 (325)
.....++++.+ ++....++ . .+.+++.+.++++|+|+++.
T Consensus 616 -~~~a~~la~~~~~~~~v~lD--v-~D~e~L~~~v~~~DaVIsal 656 (1042)
T PLN02819 616 -LKDAKETVEGIENAEAVQLD--V-SDSESLLKYVSQVDVVISLL 656 (1042)
T ss_pred -HHHHHHHHHhcCCCceEEee--c-CCHHHHHHhhcCCCEEEECC
Confidence 23456667766 76555443 1 12356777767889888875
No 154
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=86.96 E-value=5.4 Score=36.50 Aligned_cols=78 Identities=22% Similarity=0.271 Sum_probs=45.2
Q ss_pred ceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCC---------chHHHHHHHCCCCEEEecCC--CChhHHH
Q 020508 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPN---------SHVIRFLERHGIPYHYLCAK--ENEREEE 197 (325)
Q Consensus 129 ~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~---------~~~~~~a~~~gIp~~~~~~~--~~~~~~~ 197 (325)
||++++.||..=+..+|+.+.++ ++|++++|-.+...+ .-+...|+..|||.+.++.. .....++
T Consensus 1 Mk~~~l~SGGKDS~~al~~a~~~----~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~~~~e~~~e~ 76 (223)
T TIGR00290 1 MKVAALISGGKDSCLALYHALKE----HEVISLVNIMPENEESYMFHGVNAHLTDLQAESIGIPLIKLYTEGTEEDEVEE 76 (223)
T ss_pred CcEEEEecCcHHHHHHHHHHHHh----CeeEEEEEEecCCCCcccccccCHHHHHHHHHHcCCCeEEeecCCCccHHHHH
Confidence 47788888865444556655443 456666554332111 22567899999998765421 1122345
Q ss_pred HHHHhc--CCCEEEE
Q 020508 198 LLELVQ--NTDFLVL 210 (325)
Q Consensus 198 ~~~~l~--~~Dliv~ 210 (325)
+.+.|+ ++|.++.
T Consensus 77 l~~~l~~~gv~~vv~ 91 (223)
T TIGR00290 77 LKGILHTLDVEAVVF 91 (223)
T ss_pred HHHHHHHcCCCEEEE
Confidence 666665 5666554
No 155
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.96 E-value=2.3 Score=31.87 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=24.6
Q ss_pred cCCCcchHHHHHHHHHhcCCeEeEeee
Q 020508 49 CPDEVGIVAKLSECIASRGGNILAADV 75 (325)
Q Consensus 49 g~DrpGIVa~Vt~~La~~giNI~~l~~ 75 (325)
.++.||..+++-+.|+++|+|+.-+.+
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~vDmI~~ 37 (75)
T cd04935 11 MWQQVGFLADVFAPFKKHGVSVDLVST 37 (75)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEEe
Confidence 358899999999999999999998876
No 156
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=86.87 E-value=5.7 Score=40.95 Aligned_cols=102 Identities=14% Similarity=0.173 Sum_probs=60.4
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCC-ceEEEEEeCCCCC-CCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcC
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLP-VEITCVISNHDRG-PNSHVIRFLERHGIPYHYLCAKENEREEELLELVQN 204 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~-~~I~~Vvt~~~~~-~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~ 204 (325)
.+||++++-+. +..+..++..+.. ++ .++. ++.|+.. ....+.+.|+++|..+.... ++.+.+++
T Consensus 174 glkVa~vGD~~~~rva~Sl~~~l~~--~g~~~v~--l~~P~~~~~p~~~~~~a~~~G~~v~i~~--------d~~eav~~ 241 (525)
T PRK13376 174 FIHIALVGDLLHGRTVHSKVNGLKI--FKNVKVD--LIAPEELAMPEHYVEKMKKNGFEVRIFS--------SIEEYLSQ 241 (525)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHh--cCCcEEE--EECCccccCCHHHHHHHHHcCCeEEEEc--------CHHHHhcc
Confidence 57999988653 2223333333221 22 4443 3334332 23456677888887776443 23455556
Q ss_pred CCE---EE-------Eec-----------cccccChhHHhhcCCCEEEEcCCCCCCCCCC
Q 020508 205 TDF---LV-------LAR-----------YMQILSGKFLRSYGKDVINIHHGLLPSFKGG 243 (325)
Q Consensus 205 ~Dl---iv-------~~g-----------~~~il~~~~l~~~~~~~iNiHpslLP~yRG~ 243 (325)
+|+ .. ..+ -.+.+.+++++..+.+++-+|| ||++||.
T Consensus 242 AD~tdvw~~~RiQ~Ermg~~~~~~~~~~~~~y~vt~elm~~ak~~ai~MHc--LPa~Rg~ 299 (525)
T PRK13376 242 KDVAKIWYFTRLQLERMGEDILEKEHILRKAVTFRKEFLDKLPEGVKFYHP--LPRHKVY 299 (525)
T ss_pred CCccceEEEeccccccCCCccchhHHHHhcCcEECHHHHhccCCCCEEECC--CCCCCCC
Confidence 673 22 111 2567889999888888999998 8899994
No 157
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=86.72 E-value=2.2 Score=40.86 Aligned_cols=73 Identities=21% Similarity=0.223 Sum_probs=45.7
Q ss_pred CCceEEEEEeCC-chHH-HHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHH--h
Q 020508 127 PKYKVAVLASKQ-EHCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLEL--V 202 (325)
Q Consensus 127 ~~~ri~v~~Sg~-g~~l-~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~--l 202 (325)
+|+|++++++|. |+.+ ..++. .+ ..++++|+...+ +....++|+++|+|+.+-+ -+++++. +
T Consensus 3 ~klrVAIIGtG~IGt~hm~~l~~---~~--~velvAVvdid~---es~gla~A~~~Gi~~~~~~------ie~LL~~~~~ 68 (302)
T PRK08300 3 SKLKVAIIGSGNIGTDLMIKILR---SE--HLEPGAMVGIDP---ESDGLARARRLGVATSAEG------IDGLLAMPEF 68 (302)
T ss_pred CCCeEEEEcCcHHHHHHHHHHhc---CC--CcEEEEEEeCCh---hhHHHHHHHHcCCCcccCC------HHHHHhCcCC
Confidence 478999999887 5543 33332 22 478888876432 3345688999999985311 1344442 1
Q ss_pred cCCCEEEEecc
Q 020508 203 QNTDFLVLARY 213 (325)
Q Consensus 203 ~~~Dliv~~g~ 213 (325)
.++|+++.+.-
T Consensus 69 ~dIDiVf~AT~ 79 (302)
T PRK08300 69 DDIDIVFDATS 79 (302)
T ss_pred CCCCEEEECCC
Confidence 26788887653
No 158
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=86.65 E-value=1.1 Score=43.98 Aligned_cols=90 Identities=19% Similarity=0.275 Sum_probs=64.1
Q ss_pred EEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcccceeeeec
Q 020508 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVP 123 (325)
Q Consensus 44 ~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~~~~~~~ 123 (325)
.+.|.|.||.||..++-..|..+++|+-.+.. ++.. ++.+..|+ .+.+.+.+-..++ .++|
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEi--d~~~-----~IYln~p~--l~~~~fs~L~aei----------~~I~ 62 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEI--DPIG-----RIYLNFPE--LEFESFSSLMAEI----------RRIP 62 (511)
T ss_pred ceEEEehhhhchHHHHHHHHHhcccCccceee--cCCC-----eEEEeccc--cCHHHHHHHHHHH----------hcCC
Confidence 47899999999999999999999999987776 3323 34456776 5666666644443 3455
Q ss_pred CCCCCceEEEEEeCCc-hHHHHHHHHhhcC
Q 020508 124 DIDPKYKVAVLASKQE-HCLVDFLYGWQEG 152 (325)
Q Consensus 124 ~~~~~~ri~v~~Sg~g-~~l~~Ll~~~~~~ 152 (325)
.-....+|-++=|-.- ..|.+||+++.++
T Consensus 63 GV~~vr~V~~mPseR~hl~L~aLL~al~~p 92 (511)
T COG3283 63 GVTDVRTVPWMPSEREHLALSALLEALPEP 92 (511)
T ss_pred CccceeeecCCcchhHhHHHHHHHHhCCCc
Confidence 5445567777777654 4788899886544
No 159
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.54 E-value=5.5 Score=27.99 Aligned_cols=45 Identities=16% Similarity=0.110 Sum_probs=34.6
Q ss_pred EEEEEcC---CCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCC
Q 020508 44 IHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDP 94 (325)
Q Consensus 44 ~ltv~g~---DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~ 94 (325)
.++++|. +++|+.+++-+.|++.|+|+.-+++.. ++ ..+.+.+|.
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~---s~---~~isf~v~~ 50 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGS---SE---ISIMIGVHN 50 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecC---cc---cEEEEEEeH
Confidence 5778885 789999999999999999998887733 12 445566665
No 160
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.01 E-value=4.3 Score=27.56 Aligned_cols=27 Identities=30% Similarity=0.358 Sum_probs=24.8
Q ss_pred CCCcchHHHHHHHHHhcCCeEeEeeee
Q 020508 50 PDEVGIVAKLSECIASRGGNILAADVF 76 (325)
Q Consensus 50 ~DrpGIVa~Vt~~La~~giNI~~l~~~ 76 (325)
+|++|+.+++.+.|+++|+||.-+.+.
T Consensus 9 ~~~~~~~~~i~~~L~~~~i~i~~i~~~ 35 (61)
T cd04891 9 PDKPGVAAKIFSALAEAGINVDMIVQS 35 (61)
T ss_pred CCCCcHHHHHHHHHHHcCCcEEEEEEc
Confidence 688999999999999999999888774
No 161
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=85.92 E-value=6.2 Score=38.31 Aligned_cols=57 Identities=11% Similarity=0.071 Sum_probs=36.8
Q ss_pred HHHHHCCCCEEEecCCCChhHHHHHHHhcCCCEEEEeccc--------------------cccChhHHhhcCCCEEEEcC
Q 020508 175 RFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYM--------------------QILSGKFLRSYGKDVINIHH 234 (325)
Q Consensus 175 ~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dliv~~g~~--------------------~il~~~~l~~~~~~~iNiHp 234 (325)
++|++.|..+.... .+.+.++++|++..-.|. +.+.+++++..+ .++-+||
T Consensus 223 ~~~~~~g~~~~~~~--------d~~ea~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~~~~y~v~~~ll~~a~-~~i~mHc 293 (335)
T PRK04523 223 QNAAESGGSLTVSH--------DIDSAYAGADVVYAKSWGALPFFGNWEPEKPIRDQYQHFIVDERKMALTN-NGVFSHC 293 (335)
T ss_pred HHHHHcCCeEEEEc--------CHHHHhCCCCEEEeceeeccccCCcccccHHHHHhCcCCcCCHHHHhCCC-CCEEECC
Confidence 45677887776443 234556678888776653 456667776554 5777887
Q ss_pred CCCCCCCC
Q 020508 235 GLLPSFKG 242 (325)
Q Consensus 235 slLP~yRG 242 (325)
||.+||
T Consensus 294 --LP~~Rg 299 (335)
T PRK04523 294 --LPLRRN 299 (335)
T ss_pred --CCCCCC
Confidence 567765
No 162
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=85.65 E-value=3.4 Score=37.68 Aligned_cols=85 Identities=20% Similarity=0.246 Sum_probs=43.1
Q ss_pred ceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCC---------chHHHHHHHCCCCEEEecCC--CChhHHH
Q 020508 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPN---------SHVIRFLERHGIPYHYLCAK--ENEREEE 197 (325)
Q Consensus 129 ~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~---------~~~~~~a~~~gIp~~~~~~~--~~~~~~~ 197 (325)
||++++-||..=+..+|..+.++ ++|++++|-.+...+ .-+...|+..|||....+.. .....++
T Consensus 1 Mk~v~l~SGGKDS~lAl~~a~~~----~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~g~~~~~~~~ 76 (218)
T PF01902_consen 1 MKVVALWSGGKDSCLALYRALRQ----HEVVCLLTMVPEEEDSYMFHGVNIELIEAQAEALGIPLIEIPTSGDEEDYVED 76 (218)
T ss_dssp -EEEEE--SSHHHHHHHHHHHHT-----EEEEEEEEEESTTT-SSS-STTGTCHHHHHHHHT--EEEEEE---CCCHHHH
T ss_pred CcEEEEEcCcHHHHHHHHHHHHh----CCccEEEEeccCCCCcccccccCHHHHHHHHHHCCCCEEEEEccCccchhhHH
Confidence 68999999865344446655544 567666553322111 22688899999999877622 1223356
Q ss_pred HHHHhc--CCCEEEEeccccccChh
Q 020508 198 LLELVQ--NTDFLVLARYMQILSGK 220 (325)
Q Consensus 198 ~~~~l~--~~Dliv~~g~~~il~~~ 220 (325)
+.+.|+ +++-++. +-|....
T Consensus 77 l~~~l~~~~v~~vv~---GdI~~~~ 98 (218)
T PF01902_consen 77 LKEALKELKVEAVVF---GDIDSEY 98 (218)
T ss_dssp HHHHHCTC--SEEE-----TTS-HH
T ss_pred HHHHHHHcCCCEEEE---CcCCcHH
Confidence 777776 5665554 4455443
No 163
>PLN02527 aspartate carbamoyltransferase
Probab=85.55 E-value=9 Score=36.69 Aligned_cols=161 Identities=14% Similarity=0.157 Sum_probs=84.7
Q ss_pred chHHHHHHHHHhcCCeEeEeeeeccCCCCeE---EEEEEEEe-CCCCCChHHHHHHHHhhhhhhcccceeeeecCCCCCc
Q 020508 54 GIVAKLSECIASRGGNILAADVFVPEKKNVF---YSRSEFIF-DPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKY 129 (325)
Q Consensus 54 GIVa~Vt~~La~~giNI~~l~~~~~~~~g~F---~~~~~v~~-p~~~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~~~~~ 129 (325)
=-+++.+++|... ++++=+.......--.| .-.=.+.. ......+.|.-.++-.+-+.+|- -+.+
T Consensus 84 Es~~Dta~vls~y-~D~iviR~~~~~~~~~~a~~~~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g~----------l~g~ 152 (306)
T PLN02527 84 ETLEDTIRTVEGY-SDIIVLRHFESGAARRAAATAEIPVINAGDGPGQHPTQALLDVYTIQREIGR----------LDGI 152 (306)
T ss_pred cCHHHHHHHHHHh-CcEEEEECCChhHHHHHHHhCCCCEEECCCCCCCChHHHHHHHHHHHHHhCC----------cCCC
Confidence 3577777777777 77776665421000011 00111111 01013344444444444444431 1357
Q ss_pred eEEEEEeC-CchHHHHHHHHhhcCCCCceEEEEEeCCCCC-CCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCCE
Q 020508 130 KVAVLASK-QEHCLVDFLYGWQEGKLPVEITCVISNHDRG-PNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDF 207 (325)
Q Consensus 130 ri~v~~Sg-~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~-~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dl 207 (325)
||++++-+ ++-....++..+.. -.+.++. +++ |+.. ....+.+.+++.|..+...+ ++.+.++++|+
T Consensus 153 kva~vGD~~~~rv~~Sl~~~~~~-~~g~~v~-~~~-P~~~~~~~~~~~~~~~~g~~~~~~~--------d~~~a~~~aDv 221 (306)
T PLN02527 153 KVGLVGDLANGRTVRSLAYLLAK-YEDVKIY-FVA-PDVVKMKDDIKDYLTSKGVEWEESS--------DLMEVASKCDV 221 (306)
T ss_pred EEEEECCCCCChhHHHHHHHHHh-cCCCEEE-EEC-CCccCCCHHHHHHHHHcCCEEEEEc--------CHHHHhCCCCE
Confidence 99998865 33334555544321 0134543 233 3321 23456777888888776543 23455667888
Q ss_pred EEEec------------c-----ccccChhHHhhcCCCEEEEcCCC
Q 020508 208 LVLAR------------Y-----MQILSGKFLRSYGKDVINIHHGL 236 (325)
Q Consensus 208 iv~~g------------~-----~~il~~~~l~~~~~~~iNiHpsl 236 (325)
+..-. | .+.+.+++++..+.+++-+||.+
T Consensus 222 vyt~~~q~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHclP 267 (306)
T PLN02527 222 LYQTRIQRERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHPLP 267 (306)
T ss_pred EEECCcchhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECCCC
Confidence 77743 2 36677788887777888899865
No 164
>PLN02317 arogenate dehydratase
Probab=85.45 E-value=4.9 Score=39.73 Aligned_cols=34 Identities=21% Similarity=0.164 Sum_probs=28.9
Q ss_pred EEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeee
Q 020508 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVF 76 (325)
Q Consensus 43 ~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~ 76 (325)
..|.+.-+|+||-..++=..++.+|+|+..+.+.
T Consensus 284 TSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESR 317 (382)
T PLN02317 284 TSIVFSLEEGPGVLFKALAVFALRDINLTKIESR 317 (382)
T ss_pred EEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEee
Confidence 3344444889999999999999999999999985
No 165
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=85.01 E-value=9.1 Score=37.20 Aligned_cols=102 Identities=14% Similarity=0.209 Sum_probs=59.1
Q ss_pred CceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCC-CCchH----HHHHHHCCCCEEEecCCCChhHHHHHHHh
Q 020508 128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRG-PNSHV----IRFLERHGIPYHYLCAKENEREEELLELV 202 (325)
Q Consensus 128 ~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~-~~~~~----~~~a~~~gIp~~~~~~~~~~~~~~~~~~l 202 (325)
.+||++++.+.-..+..++..+.. ++.++.. ++ |+.. +...+ ++.+++.|..+...+ ++.+.+
T Consensus 156 g~~ia~vGD~~~~v~~Sl~~~~~~--~g~~v~~-~~-P~~~~~~~~~~~~~~~~~~~~g~~i~~~~--------d~~ea~ 223 (336)
T PRK03515 156 EMTLAYAGDARNNMGNSLLEAAAL--TGLDLRL-VA-PKACWPEAALVTECRALAQKNGGNITLTE--------DIAEGV 223 (336)
T ss_pred CCEEEEeCCCcCcHHHHHHHHHHH--cCCEEEE-EC-CchhcCcHHHHHHHHHHHHHcCCeEEEEc--------CHHHHh
Confidence 578999875421234555554332 3555443 33 3221 12222 355667787765443 234556
Q ss_pred cCCCEEEEecc------------------ccccChhHHhhc-CCCEEEEcCCCCCCCCCC
Q 020508 203 QNTDFLVLARY------------------MQILSGKFLRSY-GKDVINIHHGLLPSFKGG 243 (325)
Q Consensus 203 ~~~Dliv~~g~------------------~~il~~~~l~~~-~~~~iNiHpslLP~yRG~ 243 (325)
+++|++..-.| .+.+++++++.. +.+++-+|| ||.+||.
T Consensus 224 ~~aDvvytd~W~sm~~~~~~~~er~~~~~~y~v~~~lm~~a~k~~~ivmHc--LP~~~~~ 281 (336)
T PRK03515 224 KGADFIYTDVWVSMGEPKEVWAERIALLRPYQVNSKMMQLTGNPQVKFLHC--LPAFHDD 281 (336)
T ss_pred CCCCEEEecCcccCcchhHHHHHHHHhccCCccCHHHHhcccCCCCEEECC--CCCCCCc
Confidence 67888877422 345677778764 567888998 7898885
No 166
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=85.01 E-value=5.7 Score=28.53 Aligned_cols=60 Identities=13% Similarity=0.110 Sum_probs=40.6
Q ss_pred EEEEEEcC--CCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhh
Q 020508 43 GIHVFHCP--DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF 113 (325)
Q Consensus 43 ~~ltv~g~--DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l 113 (325)
..++++|. ..+|+.+++-+.|++.|+|+.-+++... + ..+.+-+++ ++...++..+-++|
T Consensus 2 a~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g~s---~---~sis~~v~~-----~~~~~av~~Lh~~f 63 (65)
T cd04918 2 SIISLIGNVQRSSLILERAFHVLYTKGVNVQMISQGAS---K---VNISLIVND-----SEAEGCVQALHKSF 63 (65)
T ss_pred cEEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEecCc---c---ceEEEEEeH-----HHHHHHHHHHHHHH
Confidence 46788887 4689999999999999999987776321 1 123343443 45556665555444
No 167
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=84.97 E-value=3.1 Score=31.60 Aligned_cols=27 Identities=15% Similarity=0.161 Sum_probs=24.8
Q ss_pred cCCCcchHHHHHHHHHhcCCeEeEeee
Q 020508 49 CPDEVGIVAKLSECIASRGGNILAADV 75 (325)
Q Consensus 49 g~DrpGIVa~Vt~~La~~giNI~~l~~ 75 (325)
.++.||..++|-+.|+++|+|+.-+.+
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVDmI~q 37 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVDVVAT 37 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEEe
Confidence 368899999999999999999998876
No 168
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=84.64 E-value=8.1 Score=27.97 Aligned_cols=60 Identities=18% Similarity=0.233 Sum_probs=40.0
Q ss_pred EEEEEEcC--CCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhh
Q 020508 43 GIHVFHCP--DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF 113 (325)
Q Consensus 43 ~~ltv~g~--DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l 113 (325)
..++++|. -++|+.+++.+.|++.|+|+.-+++.. + ...+.+-+++ ++..+++..+-+.|
T Consensus 3 a~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~~~~---s---~~~is~~V~~-----~~~~~av~~Lh~~f 64 (66)
T cd04915 3 AIVSVIGRDLSTPGVLARGLAALAEAGIEPIAAHQSM---R---NVDVQFVVDR-----DDYDNAIKALHAAL 64 (66)
T ss_pred EEEEEECCCCCcchHHHHHHHHHHHCCCCEEEEEecC---C---eeEEEEEEEH-----HHHHHHHHHHHHHH
Confidence 46778885 368999999999999999998777732 1 1234444444 44555555554433
No 169
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=84.59 E-value=2 Score=34.15 Aligned_cols=68 Identities=22% Similarity=0.316 Sum_probs=41.5
Q ss_pred ceEEEEEeCCc-hH-HHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhc--C
Q 020508 129 YKVAVLASKQE-HC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--N 204 (325)
Q Consensus 129 ~ri~v~~Sg~g-~~-l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~--~ 204 (325)
+||+++|.|.. .. +..+.. . ....++++|+... .....++++++|+|.+ + + +.+++. +
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~---~-~~~~~v~~v~d~~----~~~~~~~~~~~~~~~~--~----~----~~~ll~~~~ 62 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLR---S-SPDFEVVAVCDPD----PERAEAFAEKYGIPVY--T----D----LEELLADED 62 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHH---T-TTTEEEEEEECSS----HHHHHHHHHHTTSEEE--S----S----HHHHHHHTT
T ss_pred CEEEEECCcHHHHHHHHHHHh---c-CCCcEEEEEEeCC----HHHHHHHHHHhcccch--h----H----HHHHHHhhc
Confidence 58899887653 22 223332 2 1247888877543 2356778999999944 3 1 233443 7
Q ss_pred CCEEEEeccc
Q 020508 205 TDFLVLARYM 214 (325)
Q Consensus 205 ~Dliv~~g~~ 214 (325)
+|+++++.-.
T Consensus 63 ~D~V~I~tp~ 72 (120)
T PF01408_consen 63 VDAVIIATPP 72 (120)
T ss_dssp ESEEEEESSG
T ss_pred CCEEEEecCC
Confidence 9999998754
No 170
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=84.56 E-value=9.3 Score=34.94 Aligned_cols=77 Identities=22% Similarity=0.254 Sum_probs=44.1
Q ss_pred ceEEEEEeCCc-hHHHHHHHHhhcCCCCceEEEEEeCCCCCCC---------chHHHHHHHCCCCEEEecCCC--ChhHH
Q 020508 129 YKVAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNHDRGPN---------SHVIRFLERHGIPYHYLCAKE--NEREE 196 (325)
Q Consensus 129 ~ri~v~~Sg~g-~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~---------~~~~~~a~~~gIp~~~~~~~~--~~~~~ 196 (325)
||++++.||.. |++ +++.+.+. ++|+++++..+...+ .-+...|+..|||++.+.... ....+
T Consensus 1 Mkv~vl~SGGKDS~l-Al~~~~~~----~~V~~L~~~~~~~~~s~~~h~~~~~~~~~qA~algiPl~~~~~~~~~e~~~~ 75 (222)
T TIGR00289 1 MKVAVLYSGGKDSIL-ALYKALEE----HEVISLVGVFSENEESYMFHSPNLHLTDLVAEAVGIPLIKLYTSGEEEKEVE 75 (222)
T ss_pred CeEEEEecCcHHHHH-HHHHHHHc----CeeEEEEEEcCCCCCccccccCCHHHHHHHHHHcCCCeEEEEcCCchhHHHH
Confidence 58899989864 554 44444332 467777665433211 236788999999987655211 11223
Q ss_pred HHHHHhc--CCCEEEE
Q 020508 197 ELLELVQ--NTDFLVL 210 (325)
Q Consensus 197 ~~~~~l~--~~Dliv~ 210 (325)
++.+.++ +++-++.
T Consensus 76 ~l~~~l~~~gv~~vv~ 91 (222)
T TIGR00289 76 DLAGQLGELDVEALCI 91 (222)
T ss_pred HHHHHHHHcCCCEEEE
Confidence 4555554 5666554
No 171
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=84.48 E-value=2.4 Score=28.54 Aligned_cols=33 Identities=18% Similarity=0.092 Sum_probs=29.1
Q ss_pred EEEEEcCC---CcchHHHHHHHHHhcCCeEeEeeee
Q 020508 44 IHVFHCPD---EVGIVAKLSECIASRGGNILAADVF 76 (325)
Q Consensus 44 ~ltv~g~D---rpGIVa~Vt~~La~~giNI~~l~~~ 76 (325)
.+++.|.+ .+|..+++-+.|+++++|+.-+.+.
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~~ 37 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQS 37 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEcC
Confidence 46778877 8999999999999999999988874
No 172
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=84.46 E-value=11 Score=36.68 Aligned_cols=99 Identities=15% Similarity=0.227 Sum_probs=55.7
Q ss_pred CCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCC-CCchH----HHHHHHCCCCEEEecCCCChhHHHHHHH
Q 020508 127 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRG-PNSHV----IRFLERHGIPYHYLCAKENEREEELLEL 201 (325)
Q Consensus 127 ~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~-~~~~~----~~~a~~~gIp~~~~~~~~~~~~~~~~~~ 201 (325)
+.+||++++-+....+..++..+.. ++.++.. ++ |+.. ....+ .+.+++.|..+...+ .+.+.
T Consensus 154 ~g~~va~vGd~~~~v~~Sl~~~~~~--~g~~v~~-~~-P~~~~~~~~~~~~~~~~~~~~g~~~~~~~--------d~~ea 221 (331)
T PRK02102 154 KGLKLAYVGDGRNNMANSLMVGGAK--LGMDVRI-CA-PKELWPEEELVALAREIAKETGAKITITE--------DPEEA 221 (331)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHH--cCCEEEE-EC-CcccccCHHHHHHHHHHHHHcCCeEEEEc--------CHHHH
Confidence 3578888775522244555554332 3455432 33 3221 12222 345666787765433 23455
Q ss_pred hcCCCEEEEecc-----------------ccccChhHHh-hcCCCEEEEcCCCCCC
Q 020508 202 VQNTDFLVLARY-----------------MQILSGKFLR-SYGKDVINIHHGLLPS 239 (325)
Q Consensus 202 l~~~Dliv~~g~-----------------~~il~~~~l~-~~~~~~iNiHpslLP~ 239 (325)
++++|++..-.| .+.|.+++++ ..+..++-+|| ||+
T Consensus 222 ~~~aDvvyt~~w~~~~~~~~~~~~~~~~~~y~vt~ell~~~~~~d~ivmH~--lP~ 275 (331)
T PRK02102 222 VKGADVIYTDVWVSMGEEDEWEERIKLLKPYQVNMDLMKATGNPDVIFMHC--LPA 275 (331)
T ss_pred hCCCCEEEEcCcccCccccchHHHHHhccCCcCCHHHHhhhcCCCCEEECC--CCC
Confidence 668888887554 4567778888 45667888998 455
No 173
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=84.44 E-value=7 Score=26.95 Aligned_cols=32 Identities=25% Similarity=0.215 Sum_probs=27.2
Q ss_pred EEEEEc---CCCcchHHHHHHHHHhcCCeEeEeee
Q 020508 44 IHVFHC---PDEVGIVAKLSECIASRGGNILAADV 75 (325)
Q Consensus 44 ~ltv~g---~DrpGIVa~Vt~~La~~giNI~~l~~ 75 (325)
.+++.| ++.+|+.+++.+.|+++|+|+.-+++
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04936 2 KVSIVGAGMRSHPGVAAKMFEALAEAGINIEMIST 36 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 467776 47799999999999999999987765
No 174
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=83.79 E-value=12 Score=35.79 Aligned_cols=99 Identities=16% Similarity=0.295 Sum_probs=55.3
Q ss_pred CceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCC-CCchH----HHHHHHCCCCEEEecCCCChhHHHHHHHh
Q 020508 128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRG-PNSHV----IRFLERHGIPYHYLCAKENEREEELLELV 202 (325)
Q Consensus 128 ~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~-~~~~~----~~~a~~~gIp~~~~~~~~~~~~~~~~~~l 202 (325)
.+||++++-++ ..+..++..+. .++.++.. ++ |+.. +...+ .+++++.|..+...+ .. +.+
T Consensus 147 g~kva~vGD~~-~v~~S~~~~~~--~~g~~v~~-~~-P~~~~~~~~~~~~a~~~~~~~g~~~~~~~--------d~-~a~ 212 (302)
T PRK14805 147 KVKLAYVGDGN-NVTHSLMYGAA--ILGATMTV-IC-PPGHFPDGQIVAEAQELAAKSGGKLVLTS--------DI-EAI 212 (302)
T ss_pred CcEEEEEcCCC-ccHHHHHHHHH--HcCCEEEE-EC-CchhcCCHHHHHHHHHHHHHcCCEEEEEc--------CH-HHH
Confidence 47898887543 22344444432 23566443 33 3221 12223 345666787765443 11 235
Q ss_pred cCCCEEEEecc-----------------ccccChhHHhhcCCCEEEEcCCCCCCCCCC
Q 020508 203 QNTDFLVLARY-----------------MQILSGKFLRSYGKDVINIHHGLLPSFKGG 243 (325)
Q Consensus 203 ~~~Dliv~~g~-----------------~~il~~~~l~~~~~~~iNiHpslLP~yRG~ 243 (325)
+++|++..-.| .+.+.+++++..+.. +-+|| ||.+||-
T Consensus 213 ~~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~vt~~~l~~a~~~-~vmH~--lP~~Rg~ 267 (302)
T PRK14805 213 EGHDAIYTDTWISMGDDTPLAEIKAKFAPYQVNKALMEKAGAT-FVMHC--QPAHRGV 267 (302)
T ss_pred CCCCEEEeeceEeCCCccccHHHHHhccCCcCCHHHHhcCCCC-eEECC--CCCCCCC
Confidence 68888887333 356777888776655 77887 6777763
No 175
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=82.62 E-value=8.9 Score=26.40 Aligned_cols=32 Identities=22% Similarity=0.190 Sum_probs=27.5
Q ss_pred EEEEEc---CCCcchHHHHHHHHHhcCCeEeEeee
Q 020508 44 IHVFHC---PDEVGIVAKLSECIASRGGNILAADV 75 (325)
Q Consensus 44 ~ltv~g---~DrpGIVa~Vt~~La~~giNI~~l~~ 75 (325)
.+++.| .+.+|+.+++.+.|+++++|+.-+++
T Consensus 2 ~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04923 2 KVSIVGAGMRSHPGVAAKMFKALAEAGINIEMIST 36 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEc
Confidence 467777 37799999999999999999988875
No 176
>PRK08841 aspartate kinase; Validated
Probab=82.18 E-value=4.5 Score=40.09 Aligned_cols=63 Identities=16% Similarity=0.256 Sum_probs=48.5
Q ss_pred ceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhccc
Q 020508 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (325)
Q Consensus 41 ~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~ 116 (325)
.-..++++|...||+.+++-+.|+++|+||....+ +. ..+.+-++. ++..+++..+-++|..+
T Consensus 317 ~~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~i~~-----s~---~~is~vv~~-----~~~~~av~~lH~~f~~~ 379 (392)
T PRK08841 317 SVSLLTLVGLEANGMVEHACNLLAQNGIDVRQCST-----EP---QSSMLVLDP-----ANVDRAANILHKTYVTS 379 (392)
T ss_pred CEEEEEEECCCChHHHHHHHHHHHhCCCCEEEEEC-----CC---cEEEEEEeH-----HHHHHHHHHHHHHHcCC
Confidence 34579999999999999999999999999987776 22 234444443 66778888888888765
No 177
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=81.92 E-value=33 Score=29.65 Aligned_cols=114 Identities=12% Similarity=0.011 Sum_probs=72.3
Q ss_pred cceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeecc-CCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcccce
Q 020508 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP-EKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS 118 (325)
Q Consensus 40 ~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~-~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~~ 118 (325)
.+.+.+.+.=+|+||=.-+|=+=|++.|+||+.+...-. ...+.-.-.+.+.... .+..++-.+.+ ++.|+.
T Consensus 3 ~mritldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d~----~~~~~~i~~~~-e~~Gi~-- 75 (170)
T COG2061 3 QMRITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGDR----EDKDAKIIRLL-EEEGII-- 75 (170)
T ss_pred ceEEEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEEEecc----cHHHHHHHHHH-HhCCcE--
Confidence 456788899999999999999999999999998766422 2245666666666653 23344444444 556665
Q ss_pred eeeecCCCCCceEEEEEeC--CchHHHHHHHHhhcCCCCceEEEE
Q 020508 119 VVRVPDIDPKYKVAVLASK--QEHCLVDFLYGWQEGKLPVEITCV 161 (325)
Q Consensus 119 ~~~~~~~~~~~ri~v~~Sg--~g~~l~~Ll~~~~~~~l~~~I~~V 161 (325)
+.|+...+.+-+.-+..-| --+.+++-++++..-. .++++-+
T Consensus 76 I~~~dg~~~~~~~~vvLIGhiv~tdiqDTId~In~ig-~A~vvDl 119 (170)
T COG2061 76 IIRFDGARLREKTDVVLIGHIVHTDIQDTIDRINSIG-GAEVVDL 119 (170)
T ss_pred EEEecCcCcceeEeEEEEEeeecCcHHHHHHHhhccC-CEEEEEE
Confidence 4566554444444333333 3478899998864321 3555533
No 178
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=81.83 E-value=7.1 Score=39.47 Aligned_cols=65 Identities=15% Similarity=0.054 Sum_probs=42.2
Q ss_pred eEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccC-CCCe-EEEEEEEEeCCCCCChHHHHHHHHhhhh
Q 020508 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNV-FYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (325)
Q Consensus 42 ~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~-~~g~-F~~~~~v~~p~~~~~~~~L~~~l~~l~~ 111 (325)
+..|.+.-+|+||-.+++=+.++++|+|+..+.+.-.. ..+. |..-++++.. ...+.++|+.+..
T Consensus 31 ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~Eg~-----~~~l~~aL~~Lk~ 97 (464)
T TIGR01270 31 RLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVELF-----HYGLQEAMDLLKS 97 (464)
T ss_pred eEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEEcC-----HHHHHHHHHHHHH
Confidence 34444555899999999999999999999999996321 1123 3323333322 2456666666543
No 179
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=81.38 E-value=29 Score=34.06 Aligned_cols=59 Identities=12% Similarity=0.207 Sum_probs=39.7
Q ss_pred HHHHHCCCCEEEecCCCChhHHHHHHHhcCCCEEEEecc------------------------------------ccccC
Q 020508 175 RFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARY------------------------------------MQILS 218 (325)
Q Consensus 175 ~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dliv~~g~------------------------------------~~il~ 218 (325)
++|++.|..+...+ ++.+.++++|++..-.| .+.+.
T Consensus 224 ~~~~~~g~~~~~~~--------d~~ea~~~aDvvyt~~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~vt 295 (357)
T TIGR03316 224 KNAAENGGKFNIVN--------SMDEAFKDADIVYPKSWAPIAAMEKRTELYTGSDTEGAELLEQELLSQNKKHKDWVCT 295 (357)
T ss_pred HHHHHcCCeEEEEc--------CHHHHhCCCCEEEECCeeccccccccchhcccchhhhhhhhhccchhHHHHhcCCeEC
Confidence 35667887765433 23455667787777543 34477
Q ss_pred hhHHhhcC-CCEEEEcCCCCCCC-CCC
Q 020508 219 GKFLRSYG-KDVINIHHGLLPSF-KGG 243 (325)
Q Consensus 219 ~~~l~~~~-~~~iNiHpslLP~y-RG~ 243 (325)
.++++..+ ...+-+|| ||.+ ||-
T Consensus 296 ~e~l~~a~~~~~i~MHc--LP~~~Rg~ 320 (357)
T TIGR03316 296 EERMALTHDGEALYMHC--LPADIRGV 320 (357)
T ss_pred HHHHHhcCCCCcEEECC--CCCCccCc
Confidence 77777776 67888998 7887 875
No 180
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=80.84 E-value=18 Score=35.13 Aligned_cols=101 Identities=13% Similarity=0.201 Sum_probs=58.5
Q ss_pred CceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCC-CCchH----HHHHHHCCCCEEEecCCCChhHHHHHHHh
Q 020508 128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRG-PNSHV----IRFLERHGIPYHYLCAKENEREEELLELV 202 (325)
Q Consensus 128 ~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~-~~~~~----~~~a~~~gIp~~~~~~~~~~~~~~~~~~l 202 (325)
.+||++++-+....+..++..+.. ++.++.. ++ |+.. +...+ .+++++.|..+.... ++.+.+
T Consensus 156 gl~va~vGD~~~~v~~S~~~~~~~--~G~~v~~-~~-P~~~~~~~~~~~~~~~~~~~~g~~~~~~~--------d~~~a~ 223 (334)
T PRK12562 156 EMTLVYAGDARNNMGNSMLEAAAL--TGLDLRL-VA-PQACWPEASLVAECSALAQKHGGKITLTE--------DIAAGV 223 (334)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH--cCCEEEE-EC-CcccCCcHHHHHHHHHHHHHcCCeEEEEc--------CHHHHh
Confidence 478888875422234455544332 3455432 33 3221 11222 345666787665433 244556
Q ss_pred cCCCEEEEecc------------------ccccChhHHhhc-CCCEEEEcCCCCCCCCC
Q 020508 203 QNTDFLVLARY------------------MQILSGKFLRSY-GKDVINIHHGLLPSFKG 242 (325)
Q Consensus 203 ~~~Dliv~~g~------------------~~il~~~~l~~~-~~~~iNiHpslLP~yRG 242 (325)
+++|++..-.| .+.+.+++++.. +..++-+|| ||.+|+
T Consensus 224 ~~aDvvyt~~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHc--LP~~~~ 280 (334)
T PRK12562 224 KGADFIYTDVWVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHC--LPAFHD 280 (334)
T ss_pred CCCCEEEEcCccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECC--CCCCCc
Confidence 67888888654 456777888874 567888998 788764
No 181
>PRK00907 hypothetical protein; Provisional
Probab=80.48 E-value=16 Score=28.75 Aligned_cols=69 Identities=19% Similarity=0.158 Sum_probs=47.6
Q ss_pred cceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeecc-CCCCeEE-EEEEEEeCCCCCChHHHHHHHHhhhhh
Q 020508 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP-EKKNVFY-SRSEFIFDPIKWPREQMDEDFFKLSKM 112 (325)
Q Consensus 40 ~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~-~~~g~F~-~~~~v~~p~~~~~~~~L~~~l~~l~~~ 112 (325)
+-.|-+.|+|.+++++...|..++..|.-+..+-+.... .-.|.|. ..+.+.+. +.++|.+-+.+|.+.
T Consensus 15 Pc~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~at----s~eQld~iY~~L~~~ 85 (92)
T PRK00907 15 PGTFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAE----SREQYDAAHQALRDH 85 (92)
T ss_pred CCCCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEEC----CHHHHHHHHHHHhhC
Confidence 446999999999999999999999998776544333322 2346553 34444443 478888877777643
No 182
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=80.19 E-value=18 Score=32.20 Aligned_cols=55 Identities=20% Similarity=0.233 Sum_probs=34.7
Q ss_pred eEEEEEeCCc-hHHHHHHHHhhcCCCCceEEEEEeCCCCCCC---------chHHHHHHHCCCCEEEec
Q 020508 130 KVAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNHDRGPN---------SHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 130 ri~v~~Sg~g-~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~---------~~~~~~a~~~gIp~~~~~ 188 (325)
|++++.||.- |++... .+.+. +++++++++..+.... ..+...|+..|||...++
T Consensus 1 kv~v~~SGGkDS~~al~-~a~~~---G~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i~ 65 (194)
T cd01994 1 KVVALISGGKDSCYALY-RALEE---GHEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIE 65 (194)
T ss_pred CEEEEecCCHHHHHHHH-HHHHc---CCEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEEe
Confidence 6788888853 554332 22233 4678887765432111 236788999999998776
No 183
>PRK06635 aspartate kinase; Reviewed
Probab=79.45 E-value=6.3 Score=38.87 Aligned_cols=60 Identities=18% Similarity=0.200 Sum_probs=41.5
Q ss_pred eEEEEEEc---CCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhc
Q 020508 42 HGIHVFHC---PDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN 114 (325)
Q Consensus 42 ~~~ltv~g---~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~ 114 (325)
-..++++| +|+||+.+++.+.|+++|+||.-+.+. + ..+.+-++. ++...+++.+-++|.
T Consensus 340 ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~ss-----~---~~is~vv~~-----~d~~~a~~~Lh~~f~ 402 (404)
T PRK06635 340 IAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMISTS-----E---IKISVLIDE-----KYLELAVRALHEAFG 402 (404)
T ss_pred eEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEEec-----C---CeEEEEEcH-----HHHHHHHHHHHHHHC
Confidence 44688888 599999999999999999999887641 1 223333333 445555666655554
No 184
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=79.12 E-value=10 Score=36.76 Aligned_cols=34 Identities=15% Similarity=0.216 Sum_probs=22.1
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCC
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNH 165 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~ 165 (325)
++||++++.|. |......+.. .+ +.++++|+..+
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~--~p--d~ELVgV~dr~ 37 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQ--QP--DMELVGVFSRR 37 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHh--CC--CcEEEEEEcCC
Confidence 68999999986 4433222221 22 47999998765
No 185
>PRK06291 aspartate kinase; Provisional
Probab=79.08 E-value=26 Score=35.43 Aligned_cols=35 Identities=14% Similarity=0.149 Sum_probs=30.4
Q ss_pred eEEEEEEcC---CCcchHHHHHHHHHhcCCeEeEeeee
Q 020508 42 HGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVF 76 (325)
Q Consensus 42 ~~~ltv~g~---DrpGIVa~Vt~~La~~giNI~~l~~~ 76 (325)
-..+++.|. +++|+.+++.+.|+++|+|+.-++|.
T Consensus 321 valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~ 358 (465)
T PRK06291 321 VALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQG 358 (465)
T ss_pred EEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEec
Confidence 357888886 68999999999999999999988774
No 186
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=78.97 E-value=16 Score=34.77 Aligned_cols=71 Identities=20% Similarity=0.183 Sum_probs=42.2
Q ss_pred CceEEEEEeCC-chHH-HHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCC
Q 020508 128 KYKVAVLASKQ-EHCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l-~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 205 (325)
|+||+++++|. |+.+ ..++. .+ +.++++|+...+ ++...++|+++|+|...-+ .+++++. .++
T Consensus 1 klrVAIIG~G~IG~~h~~~ll~---~~--~~elvaV~d~d~---es~~la~A~~~Gi~~~~~~------~e~ll~~-~dI 65 (285)
T TIGR03215 1 KVKVAIIGSGNIGTDLMYKLLR---SE--HLEMVAMVGIDP---ESDGLARARELGVKTSAEG------VDGLLAN-PDI 65 (285)
T ss_pred CcEEEEEeCcHHHHHHHHHHHh---CC--CcEEEEEEeCCc---ccHHHHHHHHCCCCEEECC------HHHHhcC-CCC
Confidence 47999999976 5433 34432 22 478888776432 2334578999999986421 1122221 157
Q ss_pred CEEEEecc
Q 020508 206 DFLVLARY 213 (325)
Q Consensus 206 Dliv~~g~ 213 (325)
|+++.+.-
T Consensus 66 DaV~iaTp 73 (285)
T TIGR03215 66 DIVFDATS 73 (285)
T ss_pred CEEEECCC
Confidence 87777653
No 187
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=78.58 E-value=11 Score=26.86 Aligned_cols=32 Identities=3% Similarity=-0.027 Sum_probs=26.8
Q ss_pred EEEEEcC---CCcchHHHHHHHHHhcCCeEeEeee
Q 020508 44 IHVFHCP---DEVGIVAKLSECIASRGGNILAADV 75 (325)
Q Consensus 44 ~ltv~g~---DrpGIVa~Vt~~La~~giNI~~l~~ 75 (325)
.++++|. +.+|+.+++.+.|++.++++....+
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~i~~~~ 36 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHLVSQAA 36 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCceEEEEeC
Confidence 5788997 7899999999999998888865444
No 188
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=78.50 E-value=10 Score=40.53 Aligned_cols=65 Identities=14% Similarity=0.163 Sum_probs=49.4
Q ss_pred ceEEEEEEc-CCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEe--CCCCCChHHHHHHHHhh
Q 020508 41 THGIHVFHC-PDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIF--DPIKWPREQMDEDFFKL 109 (325)
Q Consensus 41 ~~~~ltv~g-~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~--p~~~~~~~~L~~~l~~l 109 (325)
....+||.. +|++|.+.++..+|+-++-+|...+... .|.+...+.|.- +. +.+...|+.++...
T Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~---~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~ 612 (693)
T PRK00227 545 EDGFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA---NGPWSAEFDVRANGPQ-DFDPQEFLQAYKSG 612 (693)
T ss_pred cCCeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec---CCceEEEEEEecCCCC-CCChHHHHHHHHHh
Confidence 346888888 9999999999999999999999988754 555555555542 22 34678888888753
No 189
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=78.40 E-value=33 Score=33.40 Aligned_cols=102 Identities=16% Similarity=0.111 Sum_probs=57.2
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCC-CCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCC
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRG-PNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~-~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 205 (325)
.+||++++.+. +-.+..++.... ..++.++. ++.|+.. ....+.+.+++.|..+.... .+.+.++++
T Consensus 159 g~kia~vGD~~~~rv~~Sl~~~l~-~~~g~~v~--~~~P~~~~~~~~~~~~~~~~g~~~~~~~--------d~~ea~~~a 227 (338)
T PRK08192 159 GMHIAMVGDLKFGRTVHSLSRLLC-MYKNVSFT--LVSPKELAMPDYVISDIENAGHKITITD--------QLEGNLDKA 227 (338)
T ss_pred CCEEEEECcCCCCchHHHHHHHHH-HhcCCEEE--EECCccccCCHHHHHHHHHcCCeEEEEc--------CHHHHHccC
Confidence 47999988653 222333333211 01134543 3333321 13456677788887765443 234555678
Q ss_pred CEEEEe-----cc----------c-cccChhHHh-hcCCCEEEEcCCCCCCCCC
Q 020508 206 DFLVLA-----RY----------M-QILSGKFLR-SYGKDVINIHHGLLPSFKG 242 (325)
Q Consensus 206 Dliv~~-----g~----------~-~il~~~~l~-~~~~~~iNiHpslLP~yRG 242 (325)
|++..- .| . +.+.+++++ ..+..++-+|| ||++||
T Consensus 228 Dvvyt~~~q~e~~~~~~~~~~~~~~y~v~~e~l~~~a~~~ai~mHc--LP~~~~ 279 (338)
T PRK08192 228 DILYLTRIQEERFPSQEEANKYRGKFRLNQSIYTQHCKSNTVIMHP--LPRDSR 279 (338)
T ss_pred CEEEEcCcccccccchHHHHHhhhccccCHHHHHhhhCCCCEEECC--CCCCCC
Confidence 888773 11 2 567778884 46667888998 677765
No 190
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=78.21 E-value=12 Score=33.21 Aligned_cols=84 Identities=12% Similarity=0.178 Sum_probs=43.9
Q ss_pred EEEEE-eCCc--hHHHHHHHHhhcCCCCceEEEEEeCCCCCC-CchHHHHHHHCCCCEEEecCCCChhH--HHHHHHhc-
Q 020508 131 VAVLA-SKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-NSHVIRFLERHGIPYHYLCAKENERE--EELLELVQ- 203 (325)
Q Consensus 131 i~v~~-Sg~g--~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~-~~~~~~~a~~~gIp~~~~~~~~~~~~--~~~~~~l~- 203 (325)
|++.+ +|.| +++..|-.+.+.. +.+|..+-++.-+.. -..++.+|+..|+|++......+..+ .+.++.++
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence 44444 4555 5666666665443 456666555544321 14578899999999986442111110 11222232
Q ss_pred -CCCEEEEeccccc
Q 020508 204 -NTDFLVLARYMQI 216 (325)
Q Consensus 204 -~~Dliv~~g~~~i 216 (325)
+.|+|++=.-++-
T Consensus 82 ~~~D~vlIDT~Gr~ 95 (196)
T PF00448_consen 82 KGYDLVLIDTAGRS 95 (196)
T ss_dssp TTSSEEEEEE-SSS
T ss_pred cCCCEEEEecCCcc
Confidence 5788887655443
No 191
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=77.95 E-value=14 Score=37.14 Aligned_cols=65 Identities=12% Similarity=0.091 Sum_probs=41.2
Q ss_pred EEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCChHHHHHHHHhhhh
Q 020508 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (325)
Q Consensus 43 ~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~-~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~ 111 (325)
..+.+.-+|+||-.+++=+.++++|+|+..+.+.-.. ..+.|..-++++.. .+ ..+.++++.+..
T Consensus 17 TSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg~---~~-~~v~~aL~~Lk~ 82 (436)
T TIGR01268 17 TSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDEA---SD-RKLEGVIEHLRQ 82 (436)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEecC---cc-HHHHHHHHHHHH
Confidence 4444445999999999999999999999999996321 12333322333322 12 455666655543
No 192
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=77.74 E-value=10 Score=31.40 Aligned_cols=62 Identities=13% Similarity=0.081 Sum_probs=46.2
Q ss_pred eEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhh
Q 020508 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (325)
Q Consensus 42 ~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~ 110 (325)
+-++-|.-+|+||=...+.++|.++++|+.-+-.++... -.+.+.+.+. +.+...++|++.+
T Consensus 69 ~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek---~KAlli~r~e----d~d~~~~aLed~g 130 (142)
T COG4747 69 TDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEK---QKALLIVRVE----DIDRAIKALEDAG 130 (142)
T ss_pred eeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecC---ceEEEEEEhh----HHHHHHHHHHHcC
Confidence 346778889999999999999999999999988887522 2233444443 4677788877754
No 193
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=77.68 E-value=16 Score=26.80 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=28.4
Q ss_pred EEEEEcC---CCcchHHHHHHHHHhcCCeEeEeeee
Q 020508 44 IHVFHCP---DEVGIVAKLSECIASRGGNILAADVF 76 (325)
Q Consensus 44 ~ltv~g~---DrpGIVa~Vt~~La~~giNI~~l~~~ 76 (325)
.++++|. +++|..+++-+.|+++++|+.-+++.
T Consensus 3 ~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~ 38 (80)
T cd04921 3 LINIEGTGMVGVPGIAARIFSALARAGINVILISQA 38 (80)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEec
Confidence 5677664 78999999999999999999988774
No 194
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=77.45 E-value=19 Score=33.31 Aligned_cols=61 Identities=25% Similarity=0.345 Sum_probs=40.0
Q ss_pred CceEEEEEeCCc--hHHHHHHHHhhc-CCCCceEEEEEeCCCCCC--CchHHHHHHHCCCCEEEec
Q 020508 128 KYKVAVLASKQE--HCLVDFLYGWQE-GKLPVEITCVISNHDRGP--NSHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 128 ~~ri~v~~Sg~g--~~l~~Ll~~~~~-~~l~~~I~~Vvt~~~~~~--~~~~~~~a~~~gIp~~~~~ 188 (325)
.-||+|.+||.. .+|-.++..++. ...+.++.+|-.++.... ...+.++|+++|||++.+.
T Consensus 29 ~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~g~~~~~~~~~~~~~~~lgI~~~v~~ 94 (258)
T PRK10696 29 GDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQKQPGFPEHVLPEYLESLGVPYHIEE 94 (258)
T ss_pred CCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecCCCCCCCHHHHHHHHHHhCCCEEEEE
Confidence 458999999963 455555554432 223568888776653211 2346889999999998654
No 195
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=77.42 E-value=7.4 Score=28.98 Aligned_cols=25 Identities=8% Similarity=0.022 Sum_probs=23.1
Q ss_pred CCcchHHHHHHHHHhcCCeEeEeee
Q 020508 51 DEVGIVAKLSECIASRGGNILAADV 75 (325)
Q Consensus 51 DrpGIVa~Vt~~La~~giNI~~l~~ 75 (325)
-+||..+++-+.|+++|+|+.-+.+
T Consensus 13 ~~~g~~~~If~~la~~~I~vd~I~~ 37 (73)
T cd04934 13 LSHGFLARIFAILDKYRLSVDLIST 37 (73)
T ss_pred cccCHHHHHHHHHHHcCCcEEEEEe
Confidence 4599999999999999999998877
No 196
>PRK12483 threonine dehydratase; Reviewed
Probab=77.10 E-value=12 Score=38.48 Aligned_cols=69 Identities=10% Similarity=0.055 Sum_probs=46.5
Q ss_pred CCCCcceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCh-HHHHHHHHh
Q 020508 36 VSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPR-EQMDEDFFK 108 (325)
Q Consensus 36 ~~~~~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~-~~L~~~l~~ 108 (325)
.......+.+.+.=|||||-.++++++|++. ||++++..-.. .+.=...+.++..+ ..+. +++.++|++
T Consensus 339 l~~~~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~-~~~~~v~v~ie~~~-~~~~~~~i~~~l~~ 408 (521)
T PRK12483 339 ELGEQREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYAD-AREAHLFVGVQTHP-RHDPRAQLLASLRA 408 (521)
T ss_pred HHhcCCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecC-CCeeEEEEEEEeCC-hhhhHHHHHHHHHH
Confidence 4445678889999999999999999999998 99998876321 12211223444444 3344 566666655
No 197
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=75.93 E-value=11 Score=35.77 Aligned_cols=87 Identities=22% Similarity=0.194 Sum_probs=49.0
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCC
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 206 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 206 (325)
..|++|++.|. |..+...+.+ ++.+|. |+ ++. ..-.+.+++.|..+..+ +++.+.+.++|
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~-----~Ga~V~-v~-~r~----~~~~~~~~~~G~~~~~~--------~~l~~~l~~aD 212 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKA-----LGANVT-VG-ARK----SAHLARITEMGLSPFHL--------SELAEEVGKID 212 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHH-----CCCEEE-EE-ECC----HHHHHHHHHcCCeeecH--------HHHHHHhCCCC
Confidence 46999988764 3333333332 245543 33 332 12356677787654321 23455666899
Q ss_pred EEEEeccccccChhHHhhcCCCEEEEc
Q 020508 207 FLVLARYMQILSGKFLRSYGKDVINIH 233 (325)
Q Consensus 207 liv~~g~~~il~~~~l~~~~~~~iNiH 233 (325)
+++.+-=..++.++.++..+.+.+-+-
T Consensus 213 iVI~t~p~~~i~~~~l~~~~~g~vIID 239 (296)
T PRK08306 213 IIFNTIPALVLTKEVLSKMPPEALIID 239 (296)
T ss_pred EEEECCChhhhhHHHHHcCCCCcEEEE
Confidence 999875445667777766654443333
No 198
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=75.83 E-value=10 Score=31.36 Aligned_cols=59 Identities=17% Similarity=0.161 Sum_probs=43.2
Q ss_pred EEEEEEcC---CCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhh
Q 020508 43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKM 112 (325)
Q Consensus 43 ~~ltv~g~---DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~ 112 (325)
.++++.|| |-+||++.|++-|++.|+-|--++++. +-+ +-| - ..+++.=.++|++.+-+
T Consensus 64 ~~lk~~gpf~FgltGilasV~~pLsd~gigIFavStyd----tDh---iLV--r--~~dLekAv~~L~eaGhe 125 (128)
T COG3603 64 SCLKFEGPFDFGLTGILASVSQPLSDNGIGIFAVSTYD----TDH---ILV--R--EEDLEKAVKALEEAGHE 125 (128)
T ss_pred EEEEEeccccCCcchhhhhhhhhHhhCCccEEEEEecc----Cce---EEE--e--hhhHHHHHHHHHHcCCc
Confidence 47889998 999999999999999999999999863 222 122 1 23456666666665543
No 199
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=75.60 E-value=34 Score=34.42 Aligned_cols=98 Identities=9% Similarity=0.060 Sum_probs=56.8
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCC-CCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCC
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRG-PNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~-~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 205 (325)
.+||++++.+. +-.+..++..+.. .++.++.. + .|+.. ....+.+.++++|..+...+ ++.+.++++
T Consensus 241 G~kIa~vGD~~~~rv~~Sl~~~la~-~~G~~v~l-~-~P~~~~~~~~~~~~~~~~G~~v~~~~--------d~~eav~~A 309 (429)
T PRK11891 241 GAHIALVGDLKYGRTVHSLVKLLAL-YRGLKFTL-V-SPPTLEMPAYIVEQISRNGHVIEQTD--------DLAAGLRGA 309 (429)
T ss_pred CCEEEEECcCCCChHHHHHHHHHHH-hcCCEEEE-E-CCCccccCHHHHHHHHhcCCeEEEEc--------CHHHHhCCC
Confidence 47899888653 2333444443221 11345443 3 33322 23456677777787665433 234556678
Q ss_pred CEEEEec--------------c-ccccChhHHhh-cCCCEEEEcCCC
Q 020508 206 DFLVLAR--------------Y-MQILSGKFLRS-YGKDVINIHHGL 236 (325)
Q Consensus 206 Dliv~~g--------------~-~~il~~~~l~~-~~~~~iNiHpsl 236 (325)
|++.... | .+.+.+++++. .+..++-+||.+
T Consensus 310 DVVYt~~~q~er~~~~~~~~~~~~y~vt~ell~~~ak~dai~MHcLP 356 (429)
T PRK11891 310 DVVYATRIQKERFADESFEGYTPDFQINQALVDAVCKPDTLIMHPLP 356 (429)
T ss_pred CEEEEcCchhhcccCHHHHHhccCCcCCHHHHhCccCCCcEEECCCC
Confidence 8877633 1 36778888887 777788899844
No 200
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=75.01 E-value=9.5 Score=37.55 Aligned_cols=60 Identities=15% Similarity=0.272 Sum_probs=41.2
Q ss_pred eEEEEEEcC---CCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhc
Q 020508 42 HGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN 114 (325)
Q Consensus 42 ~~~ltv~g~---DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~ 114 (325)
-..++++|. ++||+.+++.+.|++.|+||....+ +. ..+.+-++ .++...++..+-++|.
T Consensus 337 ~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i~~-----s~---~~is~vv~-----~~d~~~av~~Lh~~f~ 399 (401)
T TIGR00656 337 LAKVSIVGAGMVGAPGVASEIFSALEEKNINILMIGS-----SE---TNISFLVD-----EKDAEKAVRKLHEVFE 399 (401)
T ss_pred eEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEEc-----CC---CEEEEEEe-----HHHHHHHHHHHHHHHc
Confidence 446779996 7999999999999999999986543 11 12333333 3556666666666553
No 201
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=74.89 E-value=11 Score=35.64 Aligned_cols=71 Identities=18% Similarity=0.224 Sum_probs=40.7
Q ss_pred CCceEEEEEeCCchHHHHHHHHhhcCCCC-ceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhc--
Q 020508 127 PKYKVAVLASKQEHCLVDFLYGWQEGKLP-VEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-- 203 (325)
Q Consensus 127 ~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~-~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~-- 203 (325)
+++||++++.|... -...+..+++.. + .++++|+.... ..+.++|+++|++ ..+. .+.++|+
T Consensus 2 ~~irvgiiG~G~~~-~~~~~~~~~~~~-~~~~~vav~d~~~----~~a~~~a~~~~~~-~~~~--------~~~~ll~~~ 66 (342)
T COG0673 2 KMIRVGIIGAGGIA-GKAHLPALAALG-GGLELVAVVDRDP----ERAEAFAEEFGIA-KAYT--------DLEELLADP 66 (342)
T ss_pred CeeEEEEEcccHHH-HHHhHHHHHhCC-CceEEEEEecCCH----HHHHHHHHHcCCC-cccC--------CHHHHhcCC
Confidence 46899999987321 111222222211 1 57777765442 3578899999999 2222 1334454
Q ss_pred CCCEEEEec
Q 020508 204 NTDFLVLAR 212 (325)
Q Consensus 204 ~~Dliv~~g 212 (325)
++|+++++.
T Consensus 67 ~iD~V~Iat 75 (342)
T COG0673 67 DIDAVYIAT 75 (342)
T ss_pred CCCEEEEcC
Confidence 478877764
No 202
>PRK02047 hypothetical protein; Provisional
Probab=74.72 E-value=29 Score=27.07 Aligned_cols=72 Identities=7% Similarity=-0.096 Sum_probs=49.6
Q ss_pred CCCcceEEEEEEcCCCcchHHHHHHHHHhcCCeEeE--eeeeccCCCCeEE-EEEEEEeCCCCCChHHHHHHHHhhhhhh
Q 020508 37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILA--ADVFVPEKKNVFY-SRSEFIFDPIKWPREQMDEDFFKLSKMF 113 (325)
Q Consensus 37 ~~~~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~--l~~~~~~~~g~F~-~~~~v~~p~~~~~~~~L~~~l~~l~~~l 113 (325)
-..+-.|-+.++|++.++..+.|-.++..+...+.+ +++.- ...|.|. ..+.+.+ .+.+++.+-++++.+.-
T Consensus 11 iefPc~~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k~-Ss~GkY~Svtv~v~v----~s~eq~~~iY~~L~~~~ 85 (91)
T PRK02047 11 IEYPSDFPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEERP-SSGGNYTGLTITVRA----TSREQLDNIYRALTGHP 85 (91)
T ss_pred ccCCCCCeEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEcc-CCCCeEEEEEEEEEE----CCHHHHHHHHHHHhhCC
Confidence 334557999999999999999999999999766544 33322 2356554 3333433 35788888888876543
No 203
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=74.06 E-value=35 Score=32.77 Aligned_cols=98 Identities=9% Similarity=0.224 Sum_probs=51.6
Q ss_pred CceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCc---hHHHHHHHCCCCEEEecCCCChhHHHHHHHhcC
Q 020508 128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNS---HVIRFLERHGIPYHYLCAKENEREEELLELVQN 204 (325)
Q Consensus 128 ~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~---~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~ 204 (325)
.+||++++-+ +.....++..+. .++.++. +++ |+..... ...+.|++.| .+.... ++.+.+++
T Consensus 153 g~~va~vGd~-~rv~~Sl~~~~~--~~G~~v~-~~~-P~~~~~~~~~~~~~~~~~~g-~i~~~~--------d~~~av~~ 218 (311)
T PRK14804 153 QKQLTYIGVH-NNVVNSLIGITA--ALGIHLT-LVT-PIAAKENIHAQTVERAKKKG-TLSWEM--------NLHKAVSH 218 (311)
T ss_pred CCEEEEECCC-CcHHHHHHHHHH--HcCCEEE-EEC-CCCccHHHHHHHHHHHHhcC-CeEEEe--------CHHHHhCC
Confidence 5789988742 333344554433 2345543 333 3322111 1234455555 332222 24455667
Q ss_pred CCEEEEecc-----------------------ccccChhHHhhcCCCEEEEcCCCCCCCCCC
Q 020508 205 TDFLVLARY-----------------------MQILSGKFLRSYGKDVINIHHGLLPSFKGG 243 (325)
Q Consensus 205 ~Dliv~~g~-----------------------~~il~~~~l~~~~~~~iNiHpslLP~yRG~ 243 (325)
+|++..-.| .+.+.+++++.. +.+-+|| ||.+||-
T Consensus 219 aDvvy~d~w~~~~~~~~~~~~~~~~~r~~~~~~y~v~~elm~~~--~~~vmH~--lP~~Rg~ 276 (311)
T PRK14804 219 ADYVYTDTWLDMEFFNDPSYADKKKQRMELMMPYQINSSLMEKT--NAKVMHD--MPIHAGY 276 (311)
T ss_pred CCEEEeeeeEECcccCccchHHHHHHHHHhccCCeECHHHHhCC--CCeEeCC--CCCCCCc
Confidence 888877433 445666666643 4667887 7888875
No 204
>PRK05601 DNA polymerase III subunit epsilon; Validated
Probab=73.65 E-value=12 Score=36.90 Aligned_cols=83 Identities=22% Similarity=0.269 Sum_probs=50.9
Q ss_pred hhhhcccceeeeecCCCC------------------CceEEEEEeCCc-hHHHHHHHHh------hcCCCCceEEEEEeC
Q 020508 110 SKMFNAMRSVVRVPDIDP------------------KYKVAVLASKQE-HCLVDFLYGW------QEGKLPVEITCVISN 164 (325)
Q Consensus 110 ~~~l~~~~~~~~~~~~~~------------------~~ri~v~~Sg~g-~~l~~Ll~~~------~~~~l~~~I~~Vvt~ 164 (325)
++.+|++++.||+...+. -|+|+| |+.- ..=..|+++. .+..+.-+-..||||
T Consensus 261 a~~fglq~s~ir~~a~~~p~~~~nPG~~~~~~~lv~Gm~v~~--~~e~~~~~d~li~~~~~agL~y~~~~~r~tslvv~n 338 (377)
T PRK05601 261 ADKFGLQRSIIRVDAQEAPRTLENPGTYEPGKGLVAGMEVVV--APEITMDPDIIIQAIVRAGLAYSEKLTRQTSVVVCN 338 (377)
T ss_pred ccccCccccccccccccCCCCCCCCCccCCCCccccCcEEEE--eCCccCCHHHHHHHHHHccchhhhccccceeEEEeC
Confidence 578999999887544322 267777 6653 1222333332 234455667899999
Q ss_pred CCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhc
Q 020508 165 HDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 203 (325)
Q Consensus 165 ~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 203 (325)
.... ...=.-.|.+.|||+. .+.+++++++
T Consensus 339 ~~~~-~~gk~~~a~~~gipl~--------~d~~fl~~~~ 368 (377)
T PRK05601 339 QTRD-LDGKAMHAQRKGIPLL--------SDVAFLAAVE 368 (377)
T ss_pred CCCC-ccchhhhhhhcCCCcc--------CHHHHHHHHH
Confidence 8542 2223456899999986 2467777764
No 205
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=73.61 E-value=26 Score=33.69 Aligned_cols=102 Identities=17% Similarity=0.075 Sum_probs=56.0
Q ss_pred hHHHHHHHHh----hcCCCCceEEEEEeCCC-CCCCchHHHHHHHCCC-CEEEec-CCCChh---------HHHHHHHhc
Q 020508 140 HCLVDFLYGW----QEGKLPVEITCVISNHD-RGPNSHVIRFLERHGI-PYHYLC-AKENER---------EEELLELVQ 203 (325)
Q Consensus 140 ~~l~~Ll~~~----~~~~l~~~I~~Vvt~~~-~~~~~~~~~~a~~~gI-p~~~~~-~~~~~~---------~~~~~~~l~ 203 (325)
|..|.|++.+ ..|.+..--++.+.+-. .....++...+..+|+ .+.... +..... ..++.+.++
T Consensus 137 HPtQaLaDl~Ti~e~~g~l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~~ 216 (310)
T PRK13814 137 HPSQALIDLMTIKQHKPHWNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLL 216 (310)
T ss_pred CchHHHHHHHHHHHHhCCcCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccccceEEEEcCHHHHhC
Confidence 5666666642 12444332334444321 1112456667778887 454433 211100 023345566
Q ss_pred CCCEEEEeccc----------------cccChhHHhhcCCCEEEEcCCCCCCCCCC
Q 020508 204 NTDFLVLARYM----------------QILSGKFLRSYGKDVINIHHGLLPSFKGG 243 (325)
Q Consensus 204 ~~Dliv~~g~~----------------~il~~~~l~~~~~~~iNiHpslLP~yRG~ 243 (325)
++|++..-.|. +.+.+++++..+..++-+|| ||.+||-
T Consensus 217 ~aDvvy~~~~~~er~~~~~~~~~~~~~y~v~~~~l~~a~~~~i~mHc--LP~~Rg~ 270 (310)
T PRK13814 217 NSDVIVTLRLQKERHDNSVDIDAFRGSFRLTPEKLYSAKPDAIVMHP--GPVNREV 270 (310)
T ss_pred CCCEEEECccccccccchhHHHHhCCCcccCHHHHHhcCCCCEEECC--CCCCCCC
Confidence 88998886662 55666777666677888887 7888764
No 206
>PRK09181 aspartate kinase; Validated
Probab=72.61 E-value=59 Score=33.17 Aligned_cols=81 Identities=11% Similarity=0.013 Sum_probs=52.9
Q ss_pred eEEEEEEcC---CCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcccce
Q 020508 42 HGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS 118 (325)
Q Consensus 42 ~~~ltv~g~---DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~~ 118 (325)
-..+++.|. +.+|+.++|-+.|+++|+||.-+.+. . ..+.+.++. . .+.++++++.+.++++.+.
T Consensus 329 ~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~~i~ss------~--~sis~~v~~-~--~~~~~~~~~~L~~~~~~~~- 396 (475)
T PRK09181 329 VFALEVFDQDMVGEDGYDLEILEILTRHKVSYISKATN------A--NTITHYLWG-S--LKTLKRVIAELEKRYPNAE- 396 (475)
T ss_pred EEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEEEEEec------C--cEEEEEEcC-C--hHHHHHHHHHHHHhcCCce-
Confidence 446677665 78999999999999999999855442 1 234455555 2 3456677777776776543
Q ss_pred eeeecCCCCCceEEEEEeCC
Q 020508 119 VVRVPDIDPKYKVAVLASKQ 138 (325)
Q Consensus 119 ~~~~~~~~~~~ri~v~~Sg~ 138 (325)
+.. ...-+|++.+.|-
T Consensus 397 -i~~---~~~a~VsvVG~gm 412 (475)
T PRK09181 397 -VTV---RKVAIVSAIGSNI 412 (475)
T ss_pred -EEE---CCceEEEEeCCCC
Confidence 221 2345777777663
No 207
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=72.59 E-value=14 Score=25.88 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=23.2
Q ss_pred CCcchHHHHHHHHHhcCCeEeEeee
Q 020508 51 DEVGIVAKLSECIASRGGNILAADV 75 (325)
Q Consensus 51 DrpGIVa~Vt~~La~~giNI~~l~~ 75 (325)
+++|..+++-+.|+++|+|+.-+.+
T Consensus 12 ~~~~~~~~if~~l~~~~i~v~~i~t 36 (62)
T cd04890 12 GEVGFLRKIFEILEKHGISVDLIPT 36 (62)
T ss_pred cccCHHHHHHHHHHHcCCeEEEEec
Confidence 7899999999999999999998866
No 208
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=72.50 E-value=48 Score=30.40 Aligned_cols=80 Identities=10% Similarity=-0.015 Sum_probs=59.2
Q ss_pred ceEEEEEEcCCCcc--hHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcccce
Q 020508 41 THGIHVFHCPDEVG--IVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS 118 (325)
Q Consensus 41 ~~~~ltv~g~DrpG--IVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~~ 118 (325)
.+|.+++.|.+..+ +-+.+-+.|.+.+..+.++++.-....+...+.+++.... .+..+++.....++..-++..-
T Consensus 141 ~~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~~~~--~~~~~le~iv~~L~~~pgV~~v 218 (225)
T PRK15385 141 KRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHA--DYRKTRELIISRIGDNDNITAI 218 (225)
T ss_pred eEEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEEecC--CchhhHHHHHHHHhCCCCeEEE
Confidence 47888888887664 6799999999999999999985333345666777776665 3456777777777777777766
Q ss_pred eeee
Q 020508 119 VVRV 122 (325)
Q Consensus 119 ~~~~ 122 (325)
.|+.
T Consensus 219 ~W~~ 222 (225)
T PRK15385 219 HWSI 222 (225)
T ss_pred EEEe
Confidence 6664
No 209
>PLN02550 threonine dehydratase
Probab=72.36 E-value=12 Score=39.24 Aligned_cols=67 Identities=9% Similarity=0.052 Sum_probs=44.5
Q ss_pred CcceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhh
Q 020508 39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (325)
Q Consensus 39 ~~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l 109 (325)
....+.+.+.=|||||-.++++++|++. ||++++..-. ..+.=...+.+++.. ..+.+++.++|++.
T Consensus 414 ~~r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~-~~~~~~v~v~ie~~~-~~~~~~i~~~l~~~ 480 (591)
T PLN02550 414 RQQEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYS-SEKEALVLYSVGVHT-EQELQALKKRMESA 480 (591)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEec-CCCceEEEEEEEeCC-HHHHHHHHHHHHHC
Confidence 4456889999999999999999999986 9999887531 112222223444444 33455566665553
No 210
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=72.30 E-value=45 Score=33.07 Aligned_cols=55 Identities=7% Similarity=0.085 Sum_probs=35.5
Q ss_pred CceEEEEEe-CC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEec
Q 020508 128 KYKVAVLAS-KQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 128 ~~ri~v~~S-g~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~ 188 (325)
++||++++| |+ |+.--+.+... ++ .++|+++.++.+ -.-+.+.|++++-.+..+.
T Consensus 1 mk~VaILGsTGSIG~~tL~vi~~~--p~-~f~VvaLaa~~n---~~~l~~q~~~f~p~~v~i~ 57 (385)
T PRK05447 1 MKRITILGSTGSIGTQTLDVIRRN--PD-RFRVVALSAGKN---VELLAEQAREFRPKYVVVA 57 (385)
T ss_pred CceEEEEcCChHHHHHHHHHHHhC--cc-ccEEEEEEcCCC---HHHHHHHHHHhCCCEEEEc
Confidence 369999995 43 43323333332 22 489999887653 2457889999998876654
No 211
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=72.03 E-value=25 Score=24.79 Aligned_cols=31 Identities=6% Similarity=0.131 Sum_probs=23.5
Q ss_pred EEEEEEcC---CCcchHHHHHHHHHhcCCeEeEeee
Q 020508 43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADV 75 (325)
Q Consensus 43 ~~ltv~g~---DrpGIVa~Vt~~La~~giNI~~l~~ 75 (325)
..++++|. ++||+.+++.+.|++ ++|.-+++
T Consensus 2 alIsvvG~~~~~~~~v~~~i~~~L~~--i~i~~i~~ 35 (64)
T cd04917 2 ALVALIGNDISETAGVEKRIFDALED--INVRMICY 35 (64)
T ss_pred eEEEEECCCccCCcCHHHHHHHHHHh--CCeEEEEE
Confidence 36788887 889999999999976 44443444
No 212
>PRK08210 aspartate kinase I; Reviewed
Probab=70.56 E-value=14 Score=36.39 Aligned_cols=62 Identities=16% Similarity=0.214 Sum_probs=42.2
Q ss_pred ceEEEEEEcC---CCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcc
Q 020508 41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (325)
Q Consensus 41 ~~~~ltv~g~---DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~ 115 (325)
.-..++++|. |+||+.+++.+.|++.|+||....+ ++ ..+.+-++. ++..+++..+-++|.+
T Consensus 338 ~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~~~~-----s~---~~is~vv~~-----~~~~~a~~~Lh~~f~~ 402 (403)
T PRK08210 338 NCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQSAD-----SH---TTIWVLVKE-----EDMEKAVNALHDAFEL 402 (403)
T ss_pred CcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEEEec-----CC---CEEEEEEcH-----HHHHHHHHHHHHHhcC
Confidence 3457778886 8999999999999999999985333 11 123333333 4466666666666644
No 213
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=70.54 E-value=31 Score=24.96 Aligned_cols=33 Identities=12% Similarity=0.134 Sum_probs=27.6
Q ss_pred EEEEEEcC-CCcchHHHHHHHHHhcCCeEeEeee
Q 020508 43 GIHVFHCP-DEVGIVAKLSECIASRGGNILAADV 75 (325)
Q Consensus 43 ~~ltv~g~-DrpGIVa~Vt~~La~~giNI~~l~~ 75 (325)
..+|+.+. +.||..+++-+.|+++|+||.=+++
T Consensus 2 ~~vtv~~~~~~~~~~a~if~~La~~~InvDmI~~ 35 (67)
T cd04914 2 TQIKVKAKDNENDLQQRVFKALANAGISVDLINV 35 (67)
T ss_pred eEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEe
Confidence 35677776 4489999999999999999998854
No 214
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=70.49 E-value=8.7 Score=32.40 Aligned_cols=80 Identities=15% Similarity=0.184 Sum_probs=45.4
Q ss_pred CceEEEEEeCCc--hHHHH-HHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEE-ecCCCChhHHHHHHHh-
Q 020508 128 KYKVAVLASKQE--HCLVD-FLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHY-LCAKENEREEELLELV- 202 (325)
Q Consensus 128 ~~ri~v~~Sg~g--~~l~~-Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~-~~~~~~~~~~~~~~~l- 202 (325)
++||.|+..|+- |.+.+ |++......+.+.-.++-..+..+.+....+.++++||+.-. .++. +-+..
T Consensus 2 ~~kVLFVC~gN~cRSpmAE~l~~~~~~~~~~v~SAGt~~~~g~~~~~~a~~vl~e~Gid~~~~~~k~-------i~~~~~ 74 (139)
T COG0394 2 MMKVLFVCTGNICRSPMAEALLRHLAPDNVEVDSAGTGGHPGEPPDPRAVEVLAEHGIDISGHRSKQ-------LTEEDF 74 (139)
T ss_pred CceEEEEcCCCcccCHHHHHHHHHhccCCeEEECCccCCCCCCCCCHHHHHHHHHcCCCcCCccCcc-------Cchhhh
Confidence 579999998874 66655 555433222222222322122222345688889999999863 2221 11111
Q ss_pred cCCCEEEEeccc
Q 020508 203 QNTDFLVLARYM 214 (325)
Q Consensus 203 ~~~Dliv~~g~~ 214 (325)
+.+|+|+...-.
T Consensus 75 ~~~DlIitmd~~ 86 (139)
T COG0394 75 DEFDLIITMDES 86 (139)
T ss_pred hhCCEEEEeChH
Confidence 278999998743
No 215
>PRK09224 threonine dehydratase; Reviewed
Probab=69.82 E-value=25 Score=36.09 Aligned_cols=68 Identities=12% Similarity=0.077 Sum_probs=46.5
Q ss_pred CCcceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCC-hHHHHHHHHhh
Q 020508 38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWP-REQMDEDFFKL 109 (325)
Q Consensus 38 ~~~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~-~~~L~~~l~~l 109 (325)
.......+.|.=|||||-..++.+.|+ +.||++++-.-. ..+.=...+.+++++ ..+ .+++.++|++.
T Consensus 324 ~~~re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~-~~~~a~V~vgie~~~-~~~~~~~i~~~L~~~ 392 (504)
T PRK09224 324 GEQREALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYA-DAKEAHIFVGVQLSR-GQEERAEIIAQLRAH 392 (504)
T ss_pred hcCCEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEec-CCCeEEEEEEEEeCC-hhhHHHHHHHHHHHc
Confidence 345678999999999999999999998 799999887531 112111224455554 233 67777777664
No 216
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=69.38 E-value=33 Score=32.06 Aligned_cols=70 Identities=19% Similarity=0.281 Sum_probs=44.3
Q ss_pred CchHHHH--HHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCCh--hHHHHHHHhc--CCCEEEEe
Q 020508 138 QEHCLVD--FLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENE--REEELLELVQ--NTDFLVLA 211 (325)
Q Consensus 138 ~g~~l~~--Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~--~~~~~~~~l~--~~Dliv~~ 211 (325)
.||-++. |.+.+++. ++++..++... ...+.+..++.|.|++.++...+. ...++.+.++ ++|++|+-
T Consensus 14 ~GHv~Rcl~LA~~l~~~--g~~v~f~~~~~----~~~~~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~vV~D 87 (279)
T TIGR03590 14 LGHVMRCLTLARALHAQ--GAEVAFACKPL----PGDLIDLLLSAGFPVYELPDESSRYDDALELINLLEEEKFDILIVD 87 (279)
T ss_pred ccHHHHHHHHHHHHHHC--CCEEEEEeCCC----CHHHHHHHHHcCCeEEEecCCCchhhhHHHHHHHHHhcCCCEEEEc
Confidence 3675554 33444322 47777666543 234567889999999887622111 1235777776 79999999
Q ss_pred cc
Q 020508 212 RY 213 (325)
Q Consensus 212 g~ 213 (325)
+|
T Consensus 88 ~y 89 (279)
T TIGR03590 88 HY 89 (279)
T ss_pred CC
Confidence 98
No 217
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=69.37 E-value=20 Score=36.77 Aligned_cols=70 Identities=10% Similarity=0.031 Sum_probs=46.8
Q ss_pred CCCCcceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhh
Q 020508 36 VSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (325)
Q Consensus 36 ~~~~~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l 109 (325)
.......+.+.|.=|||||-..++.+.|++ .||++++-.-. ..+.=...+.++++. ..+.+++.++|++.
T Consensus 319 ~~~~~re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~-~~~~a~v~vgie~~~-~~~~~~l~~~L~~~ 388 (499)
T TIGR01124 319 ELGEQREALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYA-DRKDAHIFVGVQLSN-PQERQEILARLNDG 388 (499)
T ss_pred HHhcCCEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEec-CCCeEEEEEEEEeCC-HHHHHHHHHHHHHc
Confidence 344567889999999999999999999997 59999888531 111111223444554 34566666666553
No 218
>PRK07431 aspartate kinase; Provisional
Probab=69.13 E-value=16 Score=38.07 Aligned_cols=64 Identities=13% Similarity=0.126 Sum_probs=48.1
Q ss_pred ceEEEEEEcC---CCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcccc
Q 020508 41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR 117 (325)
Q Consensus 41 ~~~~ltv~g~---DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~ 117 (325)
.-..++++|. .+||+.+++.+.|++.|+|+.-+++. . ..+.+-++. ++.+++...+-+.|++.+
T Consensus 518 ~va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~~S-----~---~~Is~vV~~-----~~~~~av~~Lh~~f~~~~ 584 (587)
T PRK07431 518 AIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIATS-----E---IRTSCVVAE-----DDGVKALQAVHQAFGLAG 584 (587)
T ss_pred CeEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEeecc-----c---eEEEEEEeH-----HHHHHHHHHHHHHhccCC
Confidence 3457999997 89999999999999999999877752 1 234444443 677788888877886653
No 219
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=68.74 E-value=24 Score=35.71 Aligned_cols=55 Identities=5% Similarity=0.057 Sum_probs=38.5
Q ss_pred CceEEEEEe-CC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEec
Q 020508 128 KYKVAVLAS-KQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 128 ~~ri~v~~S-g~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~ 188 (325)
++||++|+| |+ |+..-+++.+..+ .++++++-+++. -.-+.+.|+++.-.+..+.
T Consensus 57 ~KkI~ILGSTGSIGtqtLdVI~~~pd---~f~vvaLaag~N---i~lL~~q~~~f~p~~v~v~ 113 (454)
T PLN02696 57 PKPISLLGSTGSIGTQTLDIVAENPD---KFKVVALAAGSN---VTLLADQVRKFKPKLVAVR 113 (454)
T ss_pred ccEEEEecCCcHhhHHHHHHHHhCcc---ccEEEEEECCCC---HHHHHHHHHHhCCCEEEEc
Confidence 579999998 66 7776677765432 478888877653 2346777888887776554
No 220
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=68.51 E-value=51 Score=30.09 Aligned_cols=96 Identities=20% Similarity=0.277 Sum_probs=53.8
Q ss_pred CCceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhc--
Q 020508 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-- 203 (325)
Q Consensus 127 ~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~-- 203 (325)
+|.|+++++||+ |+.|. ++-++.|+ +.|.-..+.-. +.+..+.+|.++|+|..+ +.+.-+|+
T Consensus 3 sk~kvaiigsgni~tdlm--~k~lr~g~-~le~~~mvgid---p~sdglaraarlgv~tt~---------egv~~ll~~p 67 (310)
T COG4569 3 SKRKVAIIGSGNIGTDLM--IKILRHGQ-HLEMAVMVGID---PQSDGLARAARLGVATTH---------EGVIGLLNMP 67 (310)
T ss_pred CcceEEEEccCcccHHHH--HHHHhcCC-cccceeEEccC---CCccHHHHHHhcCCcchh---------hHHHHHHhCC
Confidence 588999999998 55432 23334544 34443333322 246778999999999863 12223333
Q ss_pred -C--CCEEEEec--cccccChhHHhhcCCCEEEEcCCCC
Q 020508 204 -N--TDFLVLAR--YMQILSGKFLRSYGKDVINIHHGLL 237 (325)
Q Consensus 204 -~--~Dliv~~g--~~~il~~~~l~~~~~~~iNiHpslL 237 (325)
. .||++-+. |-+.=...-+.....+.|.+-|+-.
T Consensus 68 ~~~di~lvfdatsa~~h~~~a~~~ae~gi~~idltpaai 106 (310)
T COG4569 68 EFADIDLVFDATSAGAHVKNAAALAEAGIRLIDLTPAAI 106 (310)
T ss_pred CCCCcceEEeccccchhhcchHhHHhcCCceeecchhcc
Confidence 3 44666442 3333333344445566777776654
No 221
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=68.14 E-value=15 Score=32.99 Aligned_cols=66 Identities=20% Similarity=0.217 Sum_probs=35.1
Q ss_pred ceEEEEE-eCC-chH-HHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCC
Q 020508 129 YKVAVLA-SKQ-EHC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (325)
Q Consensus 129 ~ri~v~~-Sg~-g~~-l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 205 (325)
|||++++ ||. |+- +++.+++ +|++.+++=|+.+ .+..-++-+..-+ .- .-+.+.+.|...
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~R------GHeVTAivRn~~K--------~~~~~~~~i~q~D--if-d~~~~a~~l~g~ 63 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKR------GHEVTAIVRNASK--------LAARQGVTILQKD--IF-DLTSLASDLAGH 63 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhC------CCeeEEEEeChHh--------ccccccceeeccc--cc-ChhhhHhhhcCC
Confidence 6999998 554 443 2333332 6999999977642 2222344333211 10 012333445577
Q ss_pred CEEEEe
Q 020508 206 DFLVLA 211 (325)
Q Consensus 206 Dliv~~ 211 (325)
|.+|++
T Consensus 64 DaVIsA 69 (211)
T COG2910 64 DAVISA 69 (211)
T ss_pred ceEEEe
Confidence 887776
No 222
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=67.74 E-value=20 Score=33.33 Aligned_cols=78 Identities=10% Similarity=0.180 Sum_probs=41.5
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCC
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 206 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 206 (325)
++||++++.|. |..+ ...+.....+.++++|+. ++ .....++++++|++.+ . ..++++ .++|
T Consensus 1 mmrIgIIG~G~iG~~i---a~~l~~~~~~~elv~v~d-~~---~~~a~~~a~~~~~~~~--~-----~~~ell---~~~D 63 (265)
T PRK13304 1 MLKIGIVGCGAIASLI---TKAILSGRINAELYAFYD-RN---LEKAENLASKTGAKAC--L-----SIDELV---EDVD 63 (265)
T ss_pred CCEEEEECccHHHHHH---HHHHHcCCCCeEEEEEEC-CC---HHHHHHHHHhcCCeeE--C-----CHHHHh---cCCC
Confidence 36999998875 3333 222222222467777654 42 2235667777777654 1 112232 4678
Q ss_pred EEEEeccccccChhHH
Q 020508 207 FLVLARYMQILSGKFL 222 (325)
Q Consensus 207 liv~~g~~~il~~~~l 222 (325)
+++.+.......+-..
T Consensus 64 vVvi~a~~~~~~~~~~ 79 (265)
T PRK13304 64 LVVECASVNAVEEVVP 79 (265)
T ss_pred EEEEcCChHHHHHHHH
Confidence 7777655544443333
No 223
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=67.41 E-value=8.6 Score=31.99 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=24.1
Q ss_pred CCCCceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCC
Q 020508 125 IDPKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNH 165 (325)
Q Consensus 125 ~~~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~ 165 (325)
..+++||+|++.|+ |++|...|.. . +++|.+|.+..
T Consensus 7 ~~~~l~I~iIGaGrVG~~La~aL~~--a---g~~v~~v~srs 43 (127)
T PF10727_consen 7 QAARLKIGIIGAGRVGTALARALAR--A---GHEVVGVYSRS 43 (127)
T ss_dssp -----EEEEECTSCCCCHHHHHHHH--T---TSEEEEESSCH
T ss_pred CCCccEEEEECCCHHHHHHHHHHHH--C---CCeEEEEEeCC
Confidence 34679999999997 7888877754 2 47888877643
No 224
>PRK09034 aspartate kinase; Reviewed
Probab=67.21 E-value=45 Score=33.67 Aligned_cols=33 Identities=15% Similarity=0.062 Sum_probs=28.0
Q ss_pred eEEEEEEc---CCCcchHHHHHHHHHhcCCeEeEee
Q 020508 42 HGIHVFHC---PDEVGIVAKLSECIASRGGNILAAD 74 (325)
Q Consensus 42 ~~~ltv~g---~DrpGIVa~Vt~~La~~giNI~~l~ 74 (325)
-..+++.+ ++++|+.+++-+.|+++|+|+.-+.
T Consensus 308 i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i~ 343 (454)
T PRK09034 308 FTSIYISKYLMNREVGFGRKVLQILEDHGISYEHMP 343 (454)
T ss_pred EEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEEc
Confidence 34667776 6889999999999999999999763
No 225
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=66.23 E-value=36 Score=32.31 Aligned_cols=97 Identities=10% Similarity=0.134 Sum_probs=50.8
Q ss_pred CceEEEEEeCCchHH---HHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCC----CChh-----H
Q 020508 128 KYKVAVLASKQEHCL---VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK----ENER-----E 195 (325)
Q Consensus 128 ~~ri~v~~Sg~g~~l---~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~----~~~~-----~ 195 (325)
++||.+++.|.|... .+|...+++. ++++..+ +.... ...+..++.|++++.++.. .+.. .
T Consensus 1 ~~~i~i~~~g~gG~~~~~~~la~~L~~~--g~ev~vv-~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~ 73 (357)
T PRK00726 1 MKKILLAGGGTGGHVFPALALAEELKKR--GWEVLYL-GTARG----MEARLVPKAGIEFHFIPSGGLRRKGSLANLKAP 73 (357)
T ss_pred CcEEEEEcCcchHhhhHHHHHHHHHHhC--CCEEEEE-ECCCc----hhhhccccCCCcEEEEeccCcCCCChHHHHHHH
Confidence 378888876665332 3566655543 4777554 44321 1234445579999877621 1100 0
Q ss_pred -------HHHHHHhc--CCCEEEEeccccccChhHHhh-cCCCEEE
Q 020508 196 -------EELLELVQ--NTDFLVLARYMQILSGKFLRS-YGKDVIN 231 (325)
Q Consensus 196 -------~~~~~~l~--~~Dliv~~g~~~il~~~~l~~-~~~~~iN 231 (325)
..+.+.++ +||++++.++..-+...+... .+..++.
T Consensus 74 ~~~~~~~~~~~~~ik~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~ 119 (357)
T PRK00726 74 FKLLKGVLQARKILKRFKPDVVVGFGGYVSGPGGLAARLLGIPLVI 119 (357)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEECCCcchhHHHHHHHHcCCCEEE
Confidence 12333444 699999998543333333232 2344554
No 226
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=66.20 E-value=19 Score=35.37 Aligned_cols=57 Identities=19% Similarity=-0.002 Sum_probs=38.1
Q ss_pred CCceEEEEEeCCc-hHH-HHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEec
Q 020508 127 PKYKVAVLASKQE-HCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 127 ~~~ri~v~~Sg~g-~~l-~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~ 188 (325)
++.||+|..||.- |.+ ..++.. . +.++.+|..+........+.++|+++|||++.++
T Consensus 4 ~~~kVlVa~SGGvDSsv~a~lL~~--~---G~eV~av~~~~~~~e~~~a~~va~~LGI~~~vvd 62 (362)
T PRK14664 4 SKKRVLVGMSGGIDSTATCLMLQE--Q---GYEIVGVTMRVWGDEPQDARELAARMGIEHYVAD 62 (362)
T ss_pred CCCEEEEEEeCCHHHHHHHHHHHH--c---CCcEEEEEecCcchhHHHHHHHHHHhCCCEEEEe
Confidence 3469999999963 433 344432 2 4678888766422122458899999999998876
No 227
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=66.01 E-value=61 Score=31.84 Aligned_cols=99 Identities=13% Similarity=0.047 Sum_probs=55.2
Q ss_pred eEEEEEEc---CCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcccce
Q 020508 42 HGIHVFHC---PDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS 118 (325)
Q Consensus 42 ~~~ltv~g---~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~~ 118 (325)
-..+++.| .+++|+.+++.+.|+++|+||.-+++.. +. .. +.+-++. .+.+...+.|.+....+....
T Consensus 260 va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~---s~-~~--Is~~V~~--~d~~~a~~~L~~~~~~~~~~~- 330 (401)
T TIGR00656 260 VTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTP---SE-TS--ISLTVDE--TDADEAVRALKDQSGAAGLDR- 330 (401)
T ss_pred EEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCC---CC-ce--EEEEEeH--HHHHHHHHHHHHHHHhcCCce-
Confidence 44688885 5789999999999999999999887732 11 22 3333343 234444444444332332211
Q ss_pred eeeecCCCCCceEEEEEeCC---chHHHHHHHHhhcC
Q 020508 119 VVRVPDIDPKYKVAVLASKQ---EHCLVDFLYGWQEG 152 (325)
Q Consensus 119 ~~~~~~~~~~~ri~v~~Sg~---g~~l~~Ll~~~~~~ 152 (325)
+...+.--+|.+.+.+- ...+..++..+.+.
T Consensus 331 ---i~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~ 364 (401)
T TIGR00656 331 ---VEVEEGLAKVSIVGAGMVGAPGVASEIFSALEEK 364 (401)
T ss_pred ---EEEeCCeEEEEEECCCcccCccHHHHHHHHHHHC
Confidence 11112334667776652 12345556555443
No 228
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=65.24 E-value=76 Score=32.73 Aligned_cols=157 Identities=15% Similarity=0.164 Sum_probs=87.2
Q ss_pred cchHHHHHHHHHhcCCeEeEeeeec--cCCC--CeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcccceeeeecCCCCC
Q 020508 53 VGIVAKLSECIASRGGNILAADVFV--PEKK--NVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPK 128 (325)
Q Consensus 53 pGIVa~Vt~~La~~giNI~~l~~~~--~~~~--g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~~~~ 128 (325)
|+-=.++.+.|++++++.++++..- ++.+ ..|..+.++ .....+.++...++..+...- -....-++
T Consensus 94 p~~n~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~i------AGy~Avi~Aa~~lgr~~~g~~---taag~vp~ 164 (511)
T TIGR00561 94 PAQNPELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANI------AGYRAIIEAAHEFGRFFTGQI---TAAGKVPP 164 (511)
T ss_pred ccCCHHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHH------HHHHHHHHHHHHhhhhcCCce---ecCCCCCC
Confidence 3345889999999999999988632 1111 122211111 113455666666666553221 11112345
Q ss_pred ceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCC-C----------hhH-
Q 020508 129 YKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE-N----------ERE- 195 (325)
Q Consensus 129 ~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~-~----------~~~- 195 (325)
-|++|++.|. |.....++.. ++.. +.|+..+ ...++.++++|..+..++... . ..+
T Consensus 165 akVlViGaG~iGl~Aa~~ak~-----lGA~-V~v~d~~-----~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~ 233 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANS-----LGAI-VRAFDTR-----PEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEF 233 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHH-----CCCE-EEEEeCC-----HHHHHHHHHcCCeEEeccccccccccccceeecCHHH
Confidence 7999998775 3443333333 2455 3344333 235788888988775555210 0 000
Q ss_pred -H---H-HHHHhcCCCEEEEec------cccccChhHHhhcCCCE
Q 020508 196 -E---E-LLELVQNTDFLVLAR------YMQILSGKFLRSYGKDV 229 (325)
Q Consensus 196 -~---~-~~~~l~~~Dliv~~g------~~~il~~~~l~~~~~~~ 229 (325)
+ + +.+.++++|+++... ..+++.++.++..+.|.
T Consensus 234 ~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGs 278 (511)
T TIGR00561 234 IAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGS 278 (511)
T ss_pred HHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCC
Confidence 1 1 222334799998877 67789999999887553
No 229
>PRK07574 formate dehydrogenase; Provisional
Probab=65.02 E-value=1e+02 Score=30.59 Aligned_cols=156 Identities=12% Similarity=0.145 Sum_probs=84.3
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCC
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 206 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 206 (325)
-++|++++.|. |..+...+.. .+.+|. +.++... . .+..+..|+..+ . ++.++++.+|
T Consensus 192 gktVGIvG~G~IG~~vA~~l~~-----fG~~V~--~~dr~~~-~---~~~~~~~g~~~~--~--------~l~ell~~aD 250 (385)
T PRK07574 192 GMTVGIVGAGRIGLAVLRRLKP-----FDVKLH--YTDRHRL-P---EEVEQELGLTYH--V--------SFDSLVSVCD 250 (385)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-----CCCEEE--EECCCCC-c---hhhHhhcCceec--C--------CHHHHhhcCC
Confidence 36899988775 5555555443 245554 3343210 1 233344554321 1 2344556889
Q ss_pred EEEEecc-----ccccChhHHhhcCCCEEEEcCCCCCCCCCC----cHHHHHHHhCCc-EeEEEEEEecCCCCCCCeEEE
Q 020508 207 FLVLARY-----MQILSGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQAFDAGVK-LIGATSHFVTEELDAGPIIEQ 276 (325)
Q Consensus 207 liv~~g~-----~~il~~~~l~~~~~~~iNiHpslLP~yRG~----~pi~~ai~~G~~-~~GvTvh~v~~~~D~G~Ii~Q 276 (325)
++++.-= ..+|.+++++.++.+.+=+=-| ||. ..+..|+.+|.- -.|.-|++-..--..-|.+..
T Consensus 251 vV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~a-----RG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~d~pL~~~ 325 (385)
T PRK07574 251 VVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTA-----RGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTM 325 (385)
T ss_pred EEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECC-----CCchhhHHHHHHHHHhCCccEEEEecCCCCCCCCCChHHhC
Confidence 9888642 4678889999888763333222 664 457778888852 355566655544344455554
Q ss_pred EEEeCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHhCc
Q 020508 277 MVERVSHRDNL--RTFVQKSEDVEKQCLAKAIKSYCELR 313 (325)
Q Consensus 277 ~~~~I~~~dt~--~~l~~r~~~~~~~ll~~al~~i~~g~ 313 (325)
..+-+.|.-.. .+..+++. +...+.+..+.+|+
T Consensus 326 pNvilTPHiag~T~e~~~~~~----~~~~~ni~~~~~G~ 360 (385)
T PRK07574 326 PRNGMTPHISGTTLSAQARYA----AGTREILECFFEGR 360 (385)
T ss_pred CCeEECCccccCcHHHHHHHH----HHHHHHHHHHHcCC
Confidence 55555554322 22333333 34445555555654
No 230
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=64.94 E-value=23 Score=34.70 Aligned_cols=57 Identities=21% Similarity=0.207 Sum_probs=39.9
Q ss_pred CCceEEEEEeCC-chHHHH-HHHHhhcCCCCceEEEEEeCCCC--CC-C-------chHHHHHHHCCCCEEEec
Q 020508 127 PKYKVAVLASKQ-EHCLVD-FLYGWQEGKLPVEITCVISNHDR--GP-N-------SHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 127 ~~~ri~v~~Sg~-g~~l~~-Ll~~~~~~~l~~~I~~Vvt~~~~--~~-~-------~~~~~~a~~~gIp~~~~~ 188 (325)
.++||+|..||. .|.+.+ ||+. + +++|.+|..+.-. .. . ..+.+.|++.|||++.++
T Consensus 2 ~~~kV~v~mSGGVDSSVaA~lLk~--Q---GyeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LGIp~~~vd 70 (356)
T COG0482 2 KKKKVLVGMSGGVDSSVAAYLLKE--Q---GYEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLGIPLYVVD 70 (356)
T ss_pred CCcEEEEEccCCHHHHHHHHHHHH--c---CCeEEEEEEEeeccCCCCcCCchhHHHHHHHHHHHhCCceEEEc
Confidence 468999999986 355544 5543 2 5899999664422 11 1 248899999999999887
No 231
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=64.88 E-value=31 Score=37.35 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=34.4
Q ss_pred ceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeecc
Q 020508 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP 78 (325)
Q Consensus 41 ~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~ 78 (325)
...-|+|.++|+|.+-+.++..+..+|.||.+.+-++.
T Consensus 683 ~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt 720 (867)
T COG2844 683 GGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTT 720 (867)
T ss_pred CceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEc
Confidence 45678899999999999999999999999999888764
No 232
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=64.72 E-value=53 Score=31.02 Aligned_cols=105 Identities=17% Similarity=0.182 Sum_probs=57.6
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCC
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 206 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 206 (325)
..|++|++.|. |..+...+.. . +.+|. +.++.. .-.+.+.+.|.....+ .++.+.++++|
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~--~---G~~V~--v~~R~~----~~~~~~~~~g~~~~~~--------~~l~~~l~~aD 211 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSA--L---GARVF--VGARSS----ADLARITEMGLIPFPL--------NKLEEKVAEID 211 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHH--C---CCEEE--EEeCCH----HHHHHHHHCCCeeecH--------HHHHHHhccCC
Confidence 36899988775 4444443332 1 34543 334421 1133445556543211 23555666899
Q ss_pred EEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhCC
Q 020508 207 FLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGV 254 (325)
Q Consensus 207 liv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~ 254 (325)
+++.+--..+++.+.++.++.+.+=+--+--| |..+..+|=..|-
T Consensus 212 iVint~P~~ii~~~~l~~~k~~aliIDlas~P---g~tdf~~Ak~~G~ 256 (287)
T TIGR02853 212 IVINTIPALVLTADVLSKLPKHAVIIDLASKP---GGTDFEYAKKRGI 256 (287)
T ss_pred EEEECCChHHhCHHHHhcCCCCeEEEEeCcCC---CCCCHHHHHHCCC
Confidence 99988655577888888776554444333333 5555666655553
No 233
>PRK06635 aspartate kinase; Reviewed
Probab=64.16 E-value=69 Score=31.50 Aligned_cols=34 Identities=24% Similarity=0.159 Sum_probs=28.3
Q ss_pred EEEEEc-CCCcchHHHHHHHHHhcCCeEeEeeeec
Q 020508 44 IHVFHC-PDEVGIVAKLSECIASRGGNILAADVFV 77 (325)
Q Consensus 44 ~ltv~g-~DrpGIVa~Vt~~La~~giNI~~l~~~~ 77 (325)
.+++.| .++||+.+++.+.|+++|+||.-+++..
T Consensus 264 ~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~ 298 (404)
T PRK06635 264 KVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNV 298 (404)
T ss_pred EEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecC
Confidence 455554 5789999999999999999999888853
No 234
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=64.04 E-value=30 Score=29.98 Aligned_cols=58 Identities=21% Similarity=0.277 Sum_probs=35.7
Q ss_pred eEEEEEeCCc--hHHHHHHHHhhcCCCCceEEEEEeCCCCCCC-----chHHHHHHHCCCCEEEec
Q 020508 130 KVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPN-----SHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 130 ri~v~~Sg~g--~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~-----~~~~~~a~~~gIp~~~~~ 188 (325)
||+|-+||.. .+|-.++..++. ..+.++.+|..++.-... ..+.++|+++|||++...
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~-~~~~~~~~~~vdh~~~~~s~~~~~~v~~~~~~~~i~~~~~~ 65 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRR-RNGIKLIAVHVDHGLREESDEEAEFVEEICEQLGIPLYIVR 65 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHT-TTTTEEEEEEEE-STSCCHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHH-hcCCCeEEEEEecCCCcccchhHHHHHHHHHhcCCceEEEE
Confidence 6888889853 455555555443 234578888777643222 348999999999998766
No 235
>PRK07431 aspartate kinase; Provisional
Probab=63.72 E-value=27 Score=36.37 Aligned_cols=71 Identities=18% Similarity=0.221 Sum_probs=50.8
Q ss_pred ceEEEEEEcC---CCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcccc
Q 020508 41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR 117 (325)
Q Consensus 41 ~~~~ltv~g~---DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~ 117 (325)
.-..++++|. +++|+.+++.+.|++.|+||.-+++. . ..+.+-+++ ++..+++..+-++|.++.
T Consensus 347 ~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~sS-----e---~~Is~vv~~-----~d~~~av~~Lh~~f~~~~ 413 (587)
T PRK07431 347 NVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMISTS-----E---VKVSCVIDA-----EDGDKALRAVCEAFELED 413 (587)
T ss_pred CeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEEcC-----C---CEEEEEEcH-----HHHHHHHHHHHHHhccCC
Confidence 3557899997 89999999999999999999877742 1 123344444 456677777777887775
Q ss_pred eeeeecC
Q 020508 118 SVVRVPD 124 (325)
Q Consensus 118 ~~~~~~~ 124 (325)
.+..+.+
T Consensus 414 ~~~~~~~ 420 (587)
T PRK07431 414 SQIEINP 420 (587)
T ss_pred cccccCc
Confidence 5555444
No 236
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=63.46 E-value=18 Score=35.42 Aligned_cols=55 Identities=20% Similarity=0.186 Sum_probs=32.2
Q ss_pred ceEEEEEeCC-chHHHH-HHHHhhcCCCCceEEEEEeCCCCCCC------------chHHHHHHHCCCCEEEec
Q 020508 129 YKVAVLASKQ-EHCLVD-FLYGWQEGKLPVEITCVISNHDRGPN------------SHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 129 ~ri~v~~Sg~-g~~l~~-Ll~~~~~~~l~~~I~~Vvt~~~~~~~------------~~~~~~a~~~gIp~~~~~ 188 (325)
|||+|-.||. .|.+.+ ||+. + +++|.+|....-+..+ ..+.+.|+++|||++.++
T Consensus 1 ~kV~vamSGGVDSsvaA~LLk~--~---G~~V~Gv~m~~~~~~~~~~~~c~~~~d~~~a~~va~~LgIp~~v~d 69 (356)
T PF03054_consen 1 KKVLVAMSGGVDSSVAAALLKE--Q---GYDVIGVTMRNWDEEDESGKSCCSEEDIEDARRVAEKLGIPHYVVD 69 (356)
T ss_dssp -EEEEE--SSHHHHHHHHHHHH--C---T-EEEEEEEE-SS-SSSHH-HHHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred CeEEEEccCCHHHHHHHHHHHh--h---cccceEEEEEEeccccccCCCCCchhhHHHHHHHHHhcCCCEEEEC
Confidence 5899999996 355555 4432 3 5899998665422211 237889999999999887
No 237
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=63.33 E-value=45 Score=31.90 Aligned_cols=70 Identities=21% Similarity=0.266 Sum_probs=45.1
Q ss_pred chHHHHHHHCCCCEEEec-CCCChh-------HHHHHHHhcCCCEEEEecc------------------ccccChhHHhh
Q 020508 171 SHVIRFLERHGIPYHYLC-AKENER-------EEELLELVQNTDFLVLARY------------------MQILSGKFLRS 224 (325)
Q Consensus 171 ~~~~~~a~~~gIp~~~~~-~~~~~~-------~~~~~~~l~~~Dliv~~g~------------------~~il~~~~l~~ 224 (325)
.++...+..+|+.+.... +..... ..++.+.++++|++..-.| .+.+++++++.
T Consensus 172 ~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~d~~ea~~~aDvvyt~~~q~e~~~~~~~~~~~~~~~~y~v~~~ll~~ 251 (305)
T PRK00856 172 RSNIQALTRLGAEVRLIAPPTLLPEGMPEYGVHTDLDEVIEDADVVMMLRVQKERMDGGLLPSYEEYKRSYGLTAERLAL 251 (305)
T ss_pred HHHHHHHHHcCCEEEEECCcccCcccccceEEECCHHHHhCCCCEEEECCcccccccccchHHHHHHhccCccCHHHHhh
Confidence 345667777787765543 211100 1233455668898887543 46788888888
Q ss_pred cCCCEEEEcCCCCCCCCC
Q 020508 225 YGKDVINIHHGLLPSFKG 242 (325)
Q Consensus 225 ~~~~~iNiHpslLP~yRG 242 (325)
.+..++-+|| ||.+||
T Consensus 252 a~~~~~~mHc--LPa~Rg 267 (305)
T PRK00856 252 AKPDAIVMHP--GPVNRG 267 (305)
T ss_pred cCCCCEEECC--CCCCCC
Confidence 7778888998 778776
No 238
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=62.00 E-value=56 Score=29.41 Aligned_cols=84 Identities=13% Similarity=0.158 Sum_probs=50.2
Q ss_pred HHHHHHHhhhhhhcccceeeeecC---------CCCCceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCC
Q 020508 101 QMDEDFFKLSKMFNAMRSVVRVPD---------IDPKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPN 170 (325)
Q Consensus 101 ~L~~~l~~l~~~l~~~~~~~~~~~---------~~~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~ 170 (325)
.++.++++.-.+|-.+...+..++ ....-|+++|+-.. ..|-.. +.....+.-+.+|-.|-+.-+ +
T Consensus 73 A~qrayd~A~~RL~p~~~~v~~~~~~~~~~~~~~~~~~rlalFvkd~C~~C~~~-~~~l~a~~~~~Diylvgs~~d---D 148 (200)
T TIGR03759 73 AFQRAYDAAWQRLYPNVLPVNLFDPSGAAGPIALQGGGRLALFVKDDCVACDAR-VQRLLADNAPLDLYLVGSQGD---D 148 (200)
T ss_pred HHHHHHHHHHHHhCCCCccccCCCcccccCccccCCCCeEEEEeCCCChHHHHH-HHHHhcCCCceeEEEecCCCC---H
Confidence 345555555555544433333322 23456999999643 455443 333333433677777665443 5
Q ss_pred chHHHHHHHCCCCEEEec
Q 020508 171 SHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 171 ~~~~~~a~~~gIp~~~~~ 188 (325)
..+..+|.+++||...+.
T Consensus 149 ~~Ir~WA~~~~Idp~~V~ 166 (200)
T TIGR03759 149 ERIRQWANRHQIDPAKVR 166 (200)
T ss_pred HHHHHHHHHcCCCHHHee
Confidence 689999999999987665
No 239
>PLN02551 aspartokinase
Probab=61.59 E-value=91 Score=32.21 Aligned_cols=86 Identities=10% Similarity=0.123 Sum_probs=49.8
Q ss_pred eEEEEEEcC---CCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcccce
Q 020508 42 HGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS 118 (325)
Q Consensus 42 ~~~ltv~g~---DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~~ 118 (325)
-..+++.|. +++|+.++|-+.|+++|+||.-+.+. .....+.++-.. -...+.+++.|+.+..+++--
T Consensus 366 v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~IssS------e~sIs~~v~~~~-~~~~~~i~~~l~~l~~el~~~-- 436 (521)
T PLN02551 366 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS------EVSISLTLDPSK-LWSRELIQQELDHLVEELEKI-- 436 (521)
T ss_pred eEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEecc------CCEEEEEEehhH-hhhhhhHHHHHHHHHHHhhcC--
Confidence 457788776 68999999999999999999988652 122233333222 011233555566655555411
Q ss_pred eeeecCCCCCceEEEEEeC
Q 020508 119 VVRVPDIDPKYKVAVLASK 137 (325)
Q Consensus 119 ~~~~~~~~~~~ri~v~~Sg 137 (325)
.++.-...--+|.+.+..
T Consensus 437 -~~V~v~~~vAiISvVG~~ 454 (521)
T PLN02551 437 -AVVNLLQGRSIISLIGNV 454 (521)
T ss_pred -CeEEEeCCEEEEEEEccC
Confidence 112222234566666653
No 240
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=61.53 E-value=33 Score=25.95 Aligned_cols=74 Identities=23% Similarity=0.269 Sum_probs=40.3
Q ss_pred eEEEEEeCC-chHHHHHHHHhh-cCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCCE
Q 020508 130 KVAVLASKQ-EHCLVDFLYGWQ-EGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDF 207 (325)
Q Consensus 130 ri~v~~Sg~-g~~l~~Ll~~~~-~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dl 207 (325)
||+|++.|+ |+.+ ...+. .+.-+.+|..+.. +. .....++++++++.+...+ .. +.++++|+
T Consensus 1 kI~iIG~G~mg~al---~~~l~~~g~~~~~v~~~~~-r~---~~~~~~~~~~~~~~~~~~~------~~---~~~~~adv 64 (96)
T PF03807_consen 1 KIGIIGAGNMGSAL---ARGLLASGIKPHEVIIVSS-RS---PEKAAELAKEYGVQATADD------NE---EAAQEADV 64 (96)
T ss_dssp EEEEESTSHHHHHH---HHHHHHTTS-GGEEEEEEE-SS---HHHHHHHHHHCTTEEESEE------HH---HHHHHTSE
T ss_pred CEEEECCCHHHHHH---HHHHHHCCCCceeEEeecc-Cc---HHHHHHHHHhhccccccCC------hH---HhhccCCE
Confidence 788986664 3433 33322 2222366654433 32 2457888899997665211 12 23336899
Q ss_pred EEEeccccccCh
Q 020508 208 LVLARYMQILSG 219 (325)
Q Consensus 208 iv~~g~~~il~~ 219 (325)
++++--.+.+++
T Consensus 65 vilav~p~~~~~ 76 (96)
T PF03807_consen 65 VILAVKPQQLPE 76 (96)
T ss_dssp EEE-S-GGGHHH
T ss_pred EEEEECHHHHHH
Confidence 999877766654
No 241
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=61.50 E-value=80 Score=34.51 Aligned_cols=35 Identities=11% Similarity=0.226 Sum_probs=30.1
Q ss_pred eEEEEEEcC---CCcchHHHHHHHHHhcCCeEeEeeee
Q 020508 42 HGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVF 76 (325)
Q Consensus 42 ~~~ltv~g~---DrpGIVa~Vt~~La~~giNI~~l~~~ 76 (325)
-..+++.|. ++||+.+++-+.|+++|+||.-++|.
T Consensus 315 valIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqs 352 (819)
T PRK09436 315 MAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQS 352 (819)
T ss_pred EEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcC
Confidence 447888876 68999999999999999999877763
No 242
>PRK00341 hypothetical protein; Provisional
Probab=61.35 E-value=51 Score=25.74 Aligned_cols=69 Identities=7% Similarity=-0.006 Sum_probs=46.8
Q ss_pred Ccc-eEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeecc-CCCCeEE-EEEEEEeCCCCCChHHHHHHHHhhhhh
Q 020508 39 TLT-HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP-EKKNVFY-SRSEFIFDPIKWPREQMDEDFFKLSKM 112 (325)
Q Consensus 39 ~~~-~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~-~~~g~F~-~~~~v~~p~~~~~~~~L~~~l~~l~~~ 112 (325)
.+- .+-+.|+|.+.+++.+.|-+++..+. .......... ...|.|. ..+.+.+. +.+++.+-+++|.+.
T Consensus 13 FPc~~~~~KViG~~~~~~~~~V~~iv~~~~-~~~~~~~~~k~Ss~GkY~S~tv~i~~~----s~~q~~~iy~~L~~~ 84 (91)
T PRK00341 13 FPCEDYPIKVIGDTGVGFKDLVIEILQKHA-DVDLSTLAERQSSNGKYTTVQLHIVAT----DEDQLQDINSALRAT 84 (91)
T ss_pred CCCCCccEEEEEcCchhHHHHHHHHHHHhC-CCcccceeeccCCCCEEEEEEEEEEEC----CHHHHHHHHHHHhhC
Confidence 344 58999999999999999999998776 5543332222 3356554 33444443 478888888887643
No 243
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=60.91 E-value=1.3e+02 Score=30.09 Aligned_cols=100 Identities=10% Similarity=0.133 Sum_probs=54.9
Q ss_pred CceEEEEEe-----CCchHH-HHHHHHhhcCCCCceEEEEEeCCCCC-CCchHHH----HHHHCCCCEEEecCCCChhHH
Q 020508 128 KYKVAVLAS-----KQEHCL-VDFLYGWQEGKLPVEITCVISNHDRG-PNSHVIR----FLERHGIPYHYLCAKENEREE 196 (325)
Q Consensus 128 ~~ri~v~~S-----g~g~~l-~~Ll~~~~~~~l~~~I~~Vvt~~~~~-~~~~~~~----~a~~~gIp~~~~~~~~~~~~~ 196 (325)
.+||++.+. |.+.+. ..++..+. .++.++. +++ |+.. ....+.+ .+++.|..+....
T Consensus 187 g~kVaivg~~~~~~g~~~~Va~Sl~~~~~--~lG~~v~-~~~-P~~~~~~~~i~~~a~~~~~~~G~~i~~~~-------- 254 (395)
T PRK07200 187 GKKIAMTWAYSPSYGKPLSVPQGIIGLMT--RFGMDVT-LAH-PEGYDLMPEVVEVAKKNAKASGGSFRQVN-------- 254 (395)
T ss_pred CCEEEEEeccccccCCcchHHHHHHHHHH--HcCCEEE-EEC-CCccCCCHHHHHHHHHHHHHcCCeEEEEc--------
Confidence 468998764 443322 33333322 2355643 333 3321 1223333 4677787775443
Q ss_pred HHHHHhcCCCEEEEeccc------------------------------------cccChhHHhhcCCC-EEEEcCCCCCC
Q 020508 197 ELLELVQNTDFLVLARYM------------------------------------QILSGKFLRSYGKD-VINIHHGLLPS 239 (325)
Q Consensus 197 ~~~~~l~~~Dliv~~g~~------------------------------------~il~~~~l~~~~~~-~iNiHpslLP~ 239 (325)
++.+.++++|++..-.|. +.+.+++++..+.+ .+-+|| ||.
T Consensus 255 d~~eav~~aDvVYtd~W~sm~~~~er~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~v~~elm~~a~~~~ai~MHc--LPa 332 (395)
T PRK07200 255 SMEEAFKDADIVYPKSWAPYKVMEERTELYRAGDHEGIKALEKELLAQNAQHKDWHCTEEMMKLTKDGKALYMHC--LPA 332 (395)
T ss_pred CHHHHhCCCCEEEEcCeeecccccccccccccccchhhhhhhhhhhHHHHHccCCCcCHHHHhccCCCCcEEECC--CCC
Confidence 234556677887776442 34556677776654 888998 678
Q ss_pred CC
Q 020508 240 FK 241 (325)
Q Consensus 240 yR 241 (325)
+|
T Consensus 333 ~r 334 (395)
T PRK07200 333 DI 334 (395)
T ss_pred CC
Confidence 76
No 244
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=60.78 E-value=35 Score=34.27 Aligned_cols=61 Identities=18% Similarity=0.281 Sum_probs=40.7
Q ss_pred CceEEEEEeCCc--hHHHHHHHHhhcCCCCceEEEEEeCCCCCCC-----chHHHHHHHCCCCEEEec
Q 020508 128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPN-----SHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 128 ~~ri~v~~Sg~g--~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~-----~~~~~~a~~~gIp~~~~~ 188 (325)
..||+|-+||.. .+|-.++..++....+.++.++..|+.-... ..+.++|+++|||++...
T Consensus 15 ~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr~~s~~~~~~~~~~~~~l~i~~~~~~ 82 (436)
T PRK10660 15 SRQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLSPNADSWVKHCEQVCQQWQVPLVVER 82 (436)
T ss_pred CCeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCCcchHHHHHHHHHHHHHcCCcEEEEE
Confidence 358999999963 4555555544322235688888888743222 236788999999998754
No 245
>PRK09181 aspartate kinase; Validated
Probab=60.32 E-value=30 Score=35.22 Aligned_cols=65 Identities=18% Similarity=0.243 Sum_probs=48.3
Q ss_pred ceEEEEEEcCC--CcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhccc
Q 020508 41 THGIHVFHCPD--EVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (325)
Q Consensus 41 ~~~~ltv~g~D--rpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~ 116 (325)
.-.+++++|.. +||+.+++-+.|++.|+||.-+.|... . ..+.+-++ .++.++++..+-++|...
T Consensus 401 ~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~qg~s----e--~~Is~vV~-----~~d~~~Av~~lH~~f~~~ 467 (475)
T PRK09181 401 KVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQSMR----Q--VNMQFVVD-----EDDYEKAICALHEALVEN 467 (475)
T ss_pred CceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEecCC----c--ceEEEEEe-----HHHHHHHHHHHHHHHhcC
Confidence 35688899875 899999999999999999998888421 1 22334343 367888888888888443
No 246
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=60.15 E-value=24 Score=28.95 Aligned_cols=43 Identities=16% Similarity=0.189 Sum_probs=30.3
Q ss_pred chHHHHHHHCCCCEEEec-CCC--C---h---------hHHHHHHHhcCCCEEEEecc
Q 020508 171 SHVIRFLERHGIPYHYLC-AKE--N---E---------REEELLELVQNTDFLVLARY 213 (325)
Q Consensus 171 ~~~~~~a~~~gIp~~~~~-~~~--~---~---------~~~~~~~~l~~~Dliv~~g~ 213 (325)
..+.++|++.|+|+.... .+. . . ..+...+.++++|+++++|.
T Consensus 29 ~~l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~iG~ 86 (137)
T PF00205_consen 29 EELRELAEKLGIPVATTPMGKGVIPEDHPLFLGYLGLFGSPAANEALEQADLVLAIGT 86 (137)
T ss_dssp HHHHHHHHHHTSEEEEEGGGTTSSTTTSTTEEEESCGGSCHHHHHHHHHSSEEEEESS
T ss_pred HHHHHHHHHHCCCEEecCccccccCCCCchhcccCCccCCHHHHHHhcCCCEEEEECC
Confidence 468899999999998665 221 0 0 12455666678999999994
No 247
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=59.28 E-value=31 Score=34.50 Aligned_cols=34 Identities=21% Similarity=0.193 Sum_probs=29.6
Q ss_pred eEEEEEEcC---CCcchHHHHHHHHHhcCCeEeEeee
Q 020508 42 HGIHVFHCP---DEVGIVAKLSECIASRGGNILAADV 75 (325)
Q Consensus 42 ~~~ltv~g~---DrpGIVa~Vt~~La~~giNI~~l~~ 75 (325)
-..++++|. ++||+++++.+.|+++|+||.-+.+
T Consensus 378 ~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~~ 414 (441)
T TIGR00657 378 LAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMISS 414 (441)
T ss_pred eEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEEe
Confidence 446888775 7899999999999999999988775
No 248
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=59.09 E-value=1.7e+02 Score=28.07 Aligned_cols=158 Identities=13% Similarity=0.118 Sum_probs=85.0
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCC
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 206 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 206 (325)
.+++++++-|. |..+..++. . .++.+|.+ .++.. . .+.....|+.+. ++.++++++|
T Consensus 145 gktvGIiG~G~IG~~va~~l~---~-~fgm~V~~--~~~~~--~---~~~~~~~~~~~~-----------~l~ell~~sD 202 (323)
T PRK15409 145 HKTLGIVGMGRIGMALAQRAH---F-GFNMPILY--NARRH--H---KEAEERFNARYC-----------DLDTLLQESD 202 (323)
T ss_pred CCEEEEEcccHHHHHHHHHHH---h-cCCCEEEE--ECCCC--c---hhhHHhcCcEec-----------CHHHHHHhCC
Confidence 47899988876 665555543 1 13456542 23321 0 122234454321 2445566889
Q ss_pred EEEEec-----cccccChhHHhhcCCCEEEEcCCCCCCCCCC----cHHHHHHHhCCc-EeEEEEEEecCCCCCCCeEEE
Q 020508 207 FLVLAR-----YMQILSGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQAFDAGVK-LIGATSHFVTEELDAGPIIEQ 276 (325)
Q Consensus 207 liv~~g-----~~~il~~~~l~~~~~~~iNiHpslLP~yRG~----~pi~~ai~~G~~-~~GvTvh~v~~~~D~G~Ii~Q 276 (325)
++++.- -..+|..+.++..+.+.+=+--| ||. ..+..|+.+|.- -.|.-++.-+.--...|.+.-
T Consensus 203 vv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~a-----RG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~ 277 (323)
T PRK15409 203 FVCIILPLTDETHHLFGAEQFAKMKSSAIFINAG-----RGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSL 277 (323)
T ss_pred EEEEeCCCChHHhhccCHHHHhcCCCCeEEEECC-----CccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcC
Confidence 988842 34688999999888764333323 774 467888888842 244455554443223456555
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCce
Q 020508 277 MVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRV 314 (325)
Q Consensus 277 ~~~~I~~~dt~~~l~~r~~~~~~~ll~~al~~i~~g~~ 314 (325)
..+-+.|.-...+... .......+.+.+..+.+|+.
T Consensus 278 ~nvilTPHia~~t~e~--~~~~~~~~~~ni~~~~~g~~ 313 (323)
T PRK15409 278 PNVVAVPHIGSATHET--RYNMAACAVDNLIDALQGKV 313 (323)
T ss_pred CCEEEcCcCCCCcHHH--HHHHHHHHHHHHHHHHcCCC
Confidence 5666666533222211 12223445556666666763
No 249
>PRK04998 hypothetical protein; Provisional
Probab=58.89 E-value=65 Score=24.85 Aligned_cols=72 Identities=11% Similarity=0.016 Sum_probs=47.7
Q ss_pred CcceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhc
Q 020508 39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN 114 (325)
Q Consensus 39 ~~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~ 114 (325)
.+-.|-+.++|+..++.+++|..++.++.-.-..+++.- ...|.|. -+.+.+.- .+.+++.+-++++.+.-+
T Consensus 12 fPc~~~~Kvig~~~~~~~~~v~~v~~~~~~~~~~~~~r~-S~~GkY~-Svtv~v~v--~s~eq~~~iY~~L~~~~~ 83 (88)
T PRK04998 12 FPCSFTYKVMGLARPELVDQVVEVVQRHAPGDYTPTVKP-SSKGNYH-SVSITITA--TSIEQVETLYEELAKIEG 83 (88)
T ss_pred CCCCceEEEEEeCcHhHHHHHHHHHHHhCCCCCCceEcc-CCCCEEE-EEEEEEEE--CCHHHHHHHHHHHhcCCC
Confidence 355799999999999999999999988744322232321 3457664 33333332 357888888888765443
No 250
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=57.49 E-value=40 Score=30.33 Aligned_cols=52 Identities=13% Similarity=0.211 Sum_probs=26.0
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCE
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPY 184 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~ 184 (325)
++||+|+++|. |+.+..-+. +.+....+.+ +++++.+ .....++++++|+..
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~--~~~~~~~~~i-~~~~~~~--~~~~~~~~~~~~~~~ 56 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLL--KTSKEYIEEI-IVSNRSN--VEKLDQLQARYNVST 56 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHH--hCCCCCcCeE-EEECCCC--HHHHHHHHHHcCcEE
Confidence 57999999886 444433222 2222222212 2344321 234566777777654
No 251
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=57.42 E-value=36 Score=29.40 Aligned_cols=58 Identities=21% Similarity=0.301 Sum_probs=35.9
Q ss_pred eEEEEEeCCc--hHHHHHHHHhhcCCCCceEEEEEeCCCCCC-----CchHHHHHHHCCCCEEEec
Q 020508 130 KVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-----NSHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 130 ri~v~~Sg~g--~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~-----~~~~~~~a~~~gIp~~~~~ 188 (325)
||+|..||.. +.+..++...... .+.++.+|..++.-.. ...+.++|+++|||++.++
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~-~~~~v~~v~vd~g~~~~~~~~~~~~~~~~~~~gi~~~~~~ 65 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPK-LKIRLIAAHVDHGLRPESDEEAEFVQQFCKKLNIPLEIKK 65 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHH-cCCCEEEEEeCCCCChhHHHHHHHHHHHHHHcCCCEEEEE
Confidence 5788889863 4445555443221 2346777766653211 1357899999999998765
No 252
>PRK08210 aspartate kinase I; Reviewed
Probab=57.02 E-value=49 Score=32.60 Aligned_cols=35 Identities=9% Similarity=0.130 Sum_probs=29.2
Q ss_pred eEEEEEEcCCC-cchHHHHHHHHHhcCCeEeEeeee
Q 020508 42 HGIHVFHCPDE-VGIVAKLSECIASRGGNILAADVF 76 (325)
Q Consensus 42 ~~~ltv~g~Dr-pGIVa~Vt~~La~~giNI~~l~~~ 76 (325)
-..+++.+... ||+.++|.+.|+++|+||.-+++.
T Consensus 271 i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~ 306 (403)
T PRK08210 271 VTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIF 306 (403)
T ss_pred cEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEec
Confidence 34667777655 999999999999999999998774
No 253
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=56.74 E-value=79 Score=28.06 Aligned_cols=158 Identities=14% Similarity=0.156 Sum_probs=83.0
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCC
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 206 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 206 (325)
.++++|.+.|+ |..+...|.. . +++|+ +++.+ ...+.++++.+|..+. +. +++... ++|
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~--~---G~~Vv--v~D~~---~~~~~~~~~~~g~~~v--~~------~~l~~~--~~D 87 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLE--E---GAKLI--VADIN---EEAVARAAELFGATVV--AP------EEIYSV--DAD 87 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--C---CCEEE--EEcCC---HHHHHHHHHHcCCEEE--cc------hhhccc--cCC
Confidence 36898877764 4444333322 2 46765 44442 2235556666664432 31 122222 799
Q ss_pred EEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhCCcEeEEEEEEecC-CCCCCCeEEEEEEeCCCCC
Q 020508 207 FLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTE-ELDAGPIIEQMVERVSHRD 285 (325)
Q Consensus 207 liv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvh~v~~-~~D~G~Ii~Q~~~~I~~~d 285 (325)
+++.+....+|.++.++..+.++| +=.+.-|--. |-...++.. -|+ +++.+ ..-+|-++.-- +....++
T Consensus 88 v~vp~A~~~~I~~~~~~~l~~~~v-~~~AN~~~~~---~~~~~~L~~---~Gi--~~~Pd~~~NaGGv~~~~-~e~~~~~ 157 (200)
T cd01075 88 VFAPCALGGVINDDTIPQLKAKAI-AGAANNQLAD---PRHGQMLHE---RGI--LYAPDYVVNAGGLINVA-DELYGGN 157 (200)
T ss_pred EEEecccccccCHHHHHHcCCCEE-EECCcCccCC---HhHHHHHHH---CCC--EEeCceeeeCcCceeeh-hHHhCCc
Confidence 999887788999999998876654 2222222211 333334332 233 34443 23355555522 1121222
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCceeee
Q 020508 286 NLRTFVQKSEDVEKQCLAKAIKSYCELRVLPY 317 (325)
Q Consensus 286 t~~~l~~r~~~~~~~ll~~al~~i~~g~~~~~ 317 (325)
.++..+|+... .+.+.+.++.-.+..++++
T Consensus 158 -~~~~~~~~~~~-~~~~~~v~~~a~~~~~~~~ 187 (200)
T cd01075 158 -EARVLAKVEAI-YDTLLEIFAQAKQDGITTL 187 (200)
T ss_pred -HHHHHHHHHHH-HHHHHHHHHHHHHhCcCHH
Confidence 44666777666 6667777666555555443
No 254
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=56.61 E-value=1.9e+02 Score=27.83 Aligned_cols=102 Identities=17% Similarity=0.275 Sum_probs=55.3
Q ss_pred CCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHH----HHCCCCEEEecCCCChhHHHHHHHh
Q 020508 127 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFL----ERHGIPYHYLCAKENEREEELLELV 202 (325)
Q Consensus 127 ~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a----~~~gIp~~~~~~~~~~~~~~~~~~l 202 (325)
+.+|+++++-|+. -...|+..... ++.++. +.+...-.++..+.+.| ++.|=-+.... +..+.+
T Consensus 152 ~g~k~a~vGDgNN-v~nSl~~~~a~--~G~dv~-ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~--------d~~eAv 219 (310)
T COG0078 152 KGLKLAYVGDGNN-VANSLLLAAAK--LGMDVR-IATPKGYEPDPEVVEKAKENAKESGGKITLTE--------DPEEAV 219 (310)
T ss_pred cCcEEEEEcCcch-HHHHHHHHHHH--hCCeEE-EECCCcCCcCHHHHHHHHHHHHhcCCeEEEec--------CHHHHh
Confidence 4589999887732 22345544322 245543 33333211234454444 44564443322 122334
Q ss_pred cCCCEEEEeccc------------------cccChhHHhhcCCCEEEEcCCCCCCCCC
Q 020508 203 QNTDFLVLARYM------------------QILSGKFLRSYGKDVINIHHGLLPSFKG 242 (325)
Q Consensus 203 ~~~Dliv~~g~~------------------~il~~~~l~~~~~~~iNiHpslLP~yRG 242 (325)
+++|++..=.|. +-+.+++++..+...+=.|. ||.+||
T Consensus 220 ~gADvvyTDvWvSMGee~e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHC--LPA~rG 275 (310)
T COG0078 220 KGADVVYTDVWVSMGEEAEAEERRIAFLPPYQVNEELMALAGPDAIFMHC--LPAHRG 275 (310)
T ss_pred CCCCEEEecCcccCcchhhhHHHHHhhCCCceeCHHHHhhcCCCeEEEeC--CCCCCC
Confidence 445555443331 45677888888778888997 999997
No 255
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=55.97 E-value=48 Score=32.10 Aligned_cols=57 Identities=19% Similarity=0.220 Sum_probs=38.6
Q ss_pred CCceEEEEEeCC-chHHHH-HHHHhhcCCCCceEEEEEeCC-C---CCC-C-------chHHHHHHHCCCCEEEec
Q 020508 127 PKYKVAVLASKQ-EHCLVD-FLYGWQEGKLPVEITCVISNH-D---RGP-N-------SHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 127 ~~~ri~v~~Sg~-g~~l~~-Ll~~~~~~~l~~~I~~Vvt~~-~---~~~-~-------~~~~~~a~~~gIp~~~~~ 188 (325)
++.||+|..||. .|...+ ||++ . ++.+.+|.... + +.. . ..+...|++.+||++.+.
T Consensus 4 ~~~~VvvamSgGVDSsVaa~Ll~~--~---g~~v~gv~M~nWd~~de~~s~cp~e~D~~da~~Vc~~LnI~~~~Vn 74 (377)
T KOG2805|consen 4 KPDRVVVAMSGGVDSSVAARLLAA--R---GYNVTGVFMKNWDSLDEFGSQCPAERDWKDAKRVCKQLNIPLHQVN 74 (377)
T ss_pred ccceEEEEecCCchHHHHHHHHHh--c---CCCeeEEeeeccccccccccCCCchhhHHHHHHHHHHhCCeeEEEe
Confidence 457899999886 365555 4443 2 47788887754 1 111 1 347889999999999876
No 256
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=55.93 E-value=97 Score=30.94 Aligned_cols=78 Identities=17% Similarity=0.071 Sum_probs=48.4
Q ss_pred CCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcccc---eeeeecCCCCCceEEEEEeCCchHHHHHHHHhhcCCCC
Q 020508 79 EKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR---SVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLP 155 (325)
Q Consensus 79 ~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~---~~~~~~~~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~ 155 (325)
+..|.|...+.---|. + ..+|..+|+++-++|--+- ..-..|-+.-|.||||+.|..|..+++++..+......
T Consensus 86 ~~~g~~ql~v~~i~~~-g--~G~l~~~~~~lk~~L~~eGlfd~~~k~~lP~~p~~I~viTs~~gAa~~D~~~~~~~r~p~ 162 (438)
T PRK00286 86 EPRGDYQLIVEEIEPA-G--IGALAAAFEQLKEKLAAEGLFDPERKKPLPFFPKRIGVITSPTGAAIRDILTVLRRRFPL 162 (438)
T ss_pred CCCCCEEEEEEEeeeC-C--ccHHHHHHHHHHHHHHHCCCCChhhcCCCCCCCCEEEEEeCCccHHHHHHHHHHHhcCCC
Confidence 4456666555433344 3 3667777777665553332 21234445558999999999999999999876654433
Q ss_pred ceEE
Q 020508 156 VEIT 159 (325)
Q Consensus 156 ~~I~ 159 (325)
+++.
T Consensus 163 ~~~~ 166 (438)
T PRK00286 163 VEVI 166 (438)
T ss_pred CeEE
Confidence 4543
No 257
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=55.91 E-value=60 Score=32.26 Aligned_cols=120 Identities=17% Similarity=0.184 Sum_probs=63.3
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHC--CCCEEEecCCCChhHHHHHHHhcC
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERH--GIPYHYLCAKENEREEELLELVQN 204 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~--gIp~~~~~~~~~~~~~~~~~~l~~ 204 (325)
++||+++++|. |+.....+. +++. .+|.. .+ +. .....+.+..- ++....++ -...+++.++|++
T Consensus 1 m~~ilviGaG~Vg~~va~~la--~~~d--~~V~i-Ad-Rs---~~~~~~i~~~~~~~v~~~~vD---~~d~~al~~li~~ 68 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLA--QNGD--GEVTI-AD-RS---KEKCARIAELIGGKVEALQVD---AADVDALVALIKD 68 (389)
T ss_pred CCcEEEECCchhHHHHHHHHH--hCCC--ceEEE-Ee-CC---HHHHHHHHhhccccceeEEec---ccChHHHHHHHhc
Confidence 47999999976 555444332 2332 45542 32 31 11223332222 46666665 1233578888887
Q ss_pred CCEEEEeccccccChhHHhhc-CCC----EEEEcCCCCCCCCCCcHHHHHHHhCCcEeEEEEEEecCCCCCC
Q 020508 205 TDFLVLARYMQILSGKFLRSY-GKD----VINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAG 271 (325)
Q Consensus 205 ~Dliv~~g~~~il~~~~l~~~-~~~----~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvh~v~~~~D~G 271 (325)
.|+++.+.= ..+...++++. +.| -++.|... . |.+....++.|+|+. .+-|+|-|
T Consensus 69 ~d~VIn~~p-~~~~~~i~ka~i~~gv~yvDts~~~~~---------~-~~~~~~a~~Agit~v-~~~G~dPG 128 (389)
T COG1748 69 FDLVINAAP-PFVDLTILKACIKTGVDYVDTSYYEEP---------P-WKLDEEAKKAGITAV-LGCGFDPG 128 (389)
T ss_pred CCEEEEeCC-chhhHHHHHHHHHhCCCEEEcccCCch---------h-hhhhHHHHHcCeEEE-cccCcCcc
Confidence 899998852 23334555322 323 23333333 2 777777777777764 33455544
No 258
>PRK06291 aspartate kinase; Provisional
Probab=55.76 E-value=41 Score=34.01 Aligned_cols=63 Identities=14% Similarity=0.137 Sum_probs=44.7
Q ss_pred eEEEEEEcC---CCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcc
Q 020508 42 HGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (325)
Q Consensus 42 ~~~ltv~g~---DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~ 115 (325)
-..++++|. +++|+.+++-..|++.|+||.-+.+... . ..+.+-++. .+...++..+-++|.+
T Consensus 398 ~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isqgsS---e---~~Is~vV~~-----~d~~~av~~Lh~~f~~ 463 (465)
T PRK06291 398 VCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQGSS---E---VNISFVVDE-----EDGERAVKVLHDEFIL 463 (465)
T ss_pred EEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEeccc---c---CeEEEEEeH-----HHHHHHHHHHHHHhcc
Confidence 457899997 7999999999999999999997776321 1 123343443 4466666666666644
No 259
>PRK09034 aspartate kinase; Reviewed
Probab=55.34 E-value=44 Score=33.74 Aligned_cols=62 Identities=18% Similarity=0.176 Sum_probs=44.4
Q ss_pred ceEEEEEEcC---CCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhh
Q 020508 41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF 113 (325)
Q Consensus 41 ~~~~ltv~g~---DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l 113 (325)
.-..++++|. ++||+.+++-+.|+++|+||.-++|.. +. ..+.+.++. ++...++..+-++|
T Consensus 384 ~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~---Se---~~Is~vV~~-----~d~~~av~~LH~~f 448 (454)
T PRK09034 384 DLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGS---SE---ISIMFGVKN-----EDAEKAVKAIYNAF 448 (454)
T ss_pred CEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC---Cc---ceEEEEEcH-----HHHHHHHHHHHHHH
Confidence 4557889885 899999999999999999999887732 22 345555554 44555566665555
No 260
>PRK10126 tyrosine phosphatase; Provisional
Probab=54.92 E-value=37 Score=28.56 Aligned_cols=79 Identities=16% Similarity=0.246 Sum_probs=43.1
Q ss_pred ceEEEEEeCCc--hHHHH-HHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCC
Q 020508 129 YKVAVLASKQE--HCLVD-FLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (325)
Q Consensus 129 ~ri~v~~Sg~g--~~l~~-Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 205 (325)
+||.|+..|+- |.+.+ +++... +.+...-.++.....++.+....+.++++||+....... ... + ..++.+
T Consensus 3 ~~iLFVC~gN~cRSpmAEa~~~~~~-~~~~v~SAG~~~~~g~~~~~~a~~~l~~~Gid~~~h~sr-~lt-~---~~~~~~ 76 (147)
T PRK10126 3 NNILVVCVGNICRSPTAERLLQRYH-PELKVESAGLGALVGKGADPTAISVAAEHQLSLEGHCAR-QIS-R---RLCRNY 76 (147)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhc-CCeEEEeeeccCCCCCCCCHHHHHHHHHcCCCcCCCccc-cCC-H---HHhccC
Confidence 68887777763 45544 554432 223333344432222234566889999999997421110 011 1 123378
Q ss_pred CEEEEecc
Q 020508 206 DFLVLARY 213 (325)
Q Consensus 206 Dliv~~g~ 213 (325)
|+|+...-
T Consensus 77 DlIl~Md~ 84 (147)
T PRK10126 77 DLILTMEK 84 (147)
T ss_pred CEEEECCH
Confidence 99999853
No 261
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=54.26 E-value=2.6e+02 Score=28.74 Aligned_cols=153 Identities=12% Similarity=0.096 Sum_probs=85.5
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCC
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 206 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 206 (325)
.++|+|++-|. |..+...+.. .+.+|.+ .++.. . .+.+...|+... + +.++++++|
T Consensus 140 gktvgIiG~G~IG~~vA~~l~~-----fG~~V~~--~d~~~--~---~~~~~~~g~~~~--~---------l~ell~~aD 196 (526)
T PRK13581 140 GKTLGIIGLGRIGSEVAKRAKA-----FGMKVIA--YDPYI--S---PERAAQLGVELV--S---------LDELLARAD 196 (526)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-----CCCEEEE--ECCCC--C---hhHHHhcCCEEE--c---------HHHHHhhCC
Confidence 46899988776 5665555543 2456543 23321 1 233455665432 1 334555789
Q ss_pred EEEEecc-----ccccChhHHhhcCCC--EEEEcCCCCCCCCCC----cHHHHHHHhCCc-EeEEEEEEecCCCCCCCeE
Q 020508 207 FLVLARY-----MQILSGKFLRSYGKD--VINIHHGLLPSFKGG----KPAKQAFDAGVK-LIGATSHFVTEELDAGPII 274 (325)
Q Consensus 207 liv~~g~-----~~il~~~~l~~~~~~--~iNiHpslLP~yRG~----~pi~~ai~~G~~-~~GvTvh~v~~~~D~G~Ii 274 (325)
++++.-- ..++.+++++..+.+ +||+ -||. ..+..|+.+|.- -.|.-++.-++-. .-|.+
T Consensus 197 iV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~-------aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~-~~pL~ 268 (526)
T PRK13581 197 FITLHTPLTPETRGLIGAEELAKMKPGVRIINC-------ARGGIIDEAALAEALKSGKVAGAALDVFEKEPPT-DSPLF 268 (526)
T ss_pred EEEEccCCChHhhcCcCHHHHhcCCCCeEEEEC-------CCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCC-Cchhh
Confidence 9887632 367888899988766 4555 3664 467788888842 2444455444433 33666
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCc
Q 020508 275 EQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELR 313 (325)
Q Consensus 275 ~Q~~~~I~~~dt~~~l~~r~~~~~~~ll~~al~~i~~g~ 313 (325)
....+-+.|.-...+. .......+.+.+.+..+.+|+
T Consensus 269 ~~~nvilTPHia~~t~--e~~~~~~~~~~~ni~~~~~g~ 305 (526)
T PRK13581 269 ELPNVVVTPHLGASTA--EAQENVAIQVAEQVIDALRGG 305 (526)
T ss_pred cCCCeeEcCccccchH--HHHHHHHHHHHHHHHHHHcCC
Confidence 6566666665433222 122233445555666666665
No 262
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=54.06 E-value=1e+02 Score=31.13 Aligned_cols=255 Identities=13% Similarity=0.180 Sum_probs=132.9
Q ss_pred hHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChH-H-HHHHHHhhhhhhcccceeeeecCCCCCceEE
Q 020508 55 IVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPRE-Q-MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVA 132 (325)
Q Consensus 55 IVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~-~-L~~~l~~l~~~l~~~~~~~~~~~~~~~~ri~ 132 (325)
.+.+|-..|-+.++|+-=+..++...... .+.-++|. +.+.. + ++--.++|.+-||-....+.+. ..+|..|.
T Consensus 30 ~~reir~ALLeADVnl~vVk~fi~~iker---a~g~ev~~-~l~p~q~~iKiV~eELv~llG~~~~~~~l~-~~~P~vIm 104 (451)
T COG0541 30 ALREIRRALLEADVNLKVVKDFIKRIKER---ALGEEVPK-GLTPGQQFIKIVYEELVKLLGGENSELNLA-KKPPTVIL 104 (451)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHH---hccccCCC-CCCHHHHHHHHHHHHHHHHhCCCCcccccC-CCCCeEEE
Confidence 45667777777777766544443100000 01223344 34432 2 2223344555555322223333 33444454
Q ss_pred EEE---eCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCC-chHHHHHHHCCCCEEEecCCCChhH---HHHHHHhc--
Q 020508 133 VLA---SKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPN-SHVIRFLERHGIPYHYLCAKENERE---EELLELVQ-- 203 (325)
Q Consensus 133 v~~---Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~-~~~~~~a~~~gIp~~~~~~~~~~~~---~~~~~~l~-- 203 (325)
..+ ||.-+....|-.+++.. +..+..|-++.-++.. ..++.+|++.|+|++.... ..+.. .+-++..+
T Consensus 105 mvGLQGsGKTTt~~KLA~~lkk~--~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~-~~~Pv~Iak~al~~ak~~ 181 (451)
T COG0541 105 MVGLQGSGKTTTAGKLAKYLKKK--GKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGT-EKDPVEIAKAALEKAKEE 181 (451)
T ss_pred EEeccCCChHhHHHHHHHHHHHc--CCceEEEecccCChHHHHHHHHHHHHcCCceecCCC-CCCHHHHHHHHHHHHHHc
Confidence 443 33334445555555542 4666666666554322 3588999999999985431 11111 11222233
Q ss_pred CCCEEEEecccc-ccChhHHhhcC--CCEEEEcCCCC--CCCCCCcHHHH--HHHhCCcEeEEEEEEecCCCCCCCeEEE
Q 020508 204 NTDFLVLARYMQ-ILSGKFLRSYG--KDVINIHHGLL--PSFKGGKPAKQ--AFDAGVKLIGATSHFVTEELDAGPIIEQ 276 (325)
Q Consensus 204 ~~Dliv~~g~~~-il~~~~l~~~~--~~~iNiHpslL--P~yRG~~pi~~--ai~~G~~~~GvTvh~v~~~~D~G~Ii~Q 276 (325)
..|++++-.-+| -+.+++.+-.. ...+|-|--+| -.--|-.+... |+.+....+|+-+-++|...-.|.-+.-
T Consensus 182 ~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~itGvIlTKlDGdaRGGaALS~ 261 (451)
T COG0541 182 GYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGITGVILTKLDGDARGGAALSA 261 (451)
T ss_pred CCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCCceEEEEcccCCCcchHHHhh
Confidence 579999875544 35666666432 12333333222 12357666554 4777778999999999988777765543
Q ss_pred EE---EeC---------------CCC---------CCHHHHHHHHHHHH-HHHHHHHHHHHHhCceeee
Q 020508 277 MV---ERV---------------SHR---------DNLRTFVQKSEDVE-KQCLAKAIKSYCELRVLPY 317 (325)
Q Consensus 277 ~~---~~I---------------~~~---------dt~~~l~~r~~~~~-~~ll~~al~~i~~g~~~~~ 317 (325)
+. .|| +|+ -+..+|.+|..+.. .+-..+..+.+..|++++.
T Consensus 262 ~~~tg~PIkFiGtGEki~dLE~F~P~R~asRILGMGDv~sLvEk~~~~~d~e~a~~~~~kl~~g~FtL~ 330 (451)
T COG0541 262 RAITGKPIKFIGTGEKIDDLEPFHPDRFASRILGMGDVLSLIEKAEEVVDEEEAEKLAEKLKKGKFTLE 330 (451)
T ss_pred HHHHCCCeEEEecCCCcccCCCcChHHHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHhCCCCHH
Confidence 31 111 110 13556777766643 3455666677777876643
No 263
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=53.41 E-value=75 Score=24.15 Aligned_cols=28 Identities=14% Similarity=0.202 Sum_probs=20.0
Q ss_pred chHHHHHHHCCCCEEEecCCCChhHHHHHHHhc
Q 020508 171 SHVIRFLERHGIPYHYLCAKENEREEELLELVQ 203 (325)
Q Consensus 171 ~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 203 (325)
..+..+|+.++||+..+++. .++=.++.
T Consensus 43 ~~i~~~c~~~~Vp~~~~~s~-----~eLG~a~G 70 (82)
T PRK13602 43 EKVEALANEKGVPVSKVDSM-----KKLGKACG 70 (82)
T ss_pred HHHHHHHHHcCCCEEEECCH-----HHHHHHHC
Confidence 45788999999999887621 35555553
No 264
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=52.77 E-value=70 Score=25.57 Aligned_cols=54 Identities=13% Similarity=0.215 Sum_probs=36.0
Q ss_pred CceEEEEEeCCch--HHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecC
Q 020508 128 KYKVAVLASKQEH--CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 189 (325)
Q Consensus 128 ~~ri~v~~Sg~g~--~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~ 189 (325)
+.-+++++|.+|. ...+.++..++. ++.+++ +|+. .++.++|.++|+++..+|.
T Consensus 43 ~~dl~I~iS~SG~t~e~i~~~~~a~~~--g~~iI~-IT~~-----~~l~~~~~~~~~~~~~~p~ 98 (119)
T cd05017 43 RKTLVIAVSYSGNTEETLSAVEQAKER--GAKIVA-ITSG-----GKLLEMAREHGVPVIIIPK 98 (119)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHC--CCEEEE-EeCC-----chHHHHHHHcCCcEEECCC
Confidence 3458888888874 344455555443 456654 4432 2588999999999998874
No 265
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=52.51 E-value=78 Score=29.56 Aligned_cols=78 Identities=12% Similarity=0.094 Sum_probs=43.5
Q ss_pred ceEEEEEeCCchHHH---HHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEec-CCC---Ch-----h--
Q 020508 129 YKVAVLASKQEHCLV---DFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKE---NE-----R-- 194 (325)
Q Consensus 129 ~ri~v~~Sg~g~~l~---~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~-~~~---~~-----~-- 194 (325)
|||.|.+.|.+..+. .|.+.+.+. ++++..+ +.+.. ....+.+++|++++.++ ... .. +
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~--g~eV~vv-~~~~~----~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~~~ 73 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKR--GVEVLWL-GTKRG----LEKRLVPKAGIEFYFIPVGGLRRKGSFRLIKTPL 73 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhC--CCEEEEE-eCCCc----chhcccccCCCceEEEeccCcCCCChHHHHHHHH
Confidence 478888877664443 566665543 4786655 54321 11234456899998776 211 00 0
Q ss_pred -----HHHHHHHhc--CCCEEEEecc
Q 020508 195 -----EEELLELVQ--NTDFLVLARY 213 (325)
Q Consensus 195 -----~~~~~~~l~--~~Dliv~~g~ 213 (325)
-..+.+.++ +||++++.+.
T Consensus 74 ~~~~~~~~l~~~i~~~~pDvVi~~~~ 99 (348)
T TIGR01133 74 KLLKAVFQARRILKKFKPDAVIGFGG 99 (348)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 012334444 7999999754
No 266
>PLN02928 oxidoreductase family protein
Probab=51.95 E-value=1.6e+02 Score=28.63 Aligned_cols=108 Identities=16% Similarity=0.192 Sum_probs=66.8
Q ss_pred HHHHHhcCCCEEEEec-----cccccChhHHhhcCCCEEEEcCCCCCCCCCC----cHHHHHHHhCCc-EeEEEEEEecC
Q 020508 197 ELLELVQNTDFLVLAR-----YMQILSGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQAFDAGVK-LIGATSHFVTE 266 (325)
Q Consensus 197 ~~~~~l~~~Dliv~~g-----~~~il~~~~l~~~~~~~iNiHpslLP~yRG~----~pi~~ai~~G~~-~~GvTvh~v~~ 266 (325)
++.+++.++|++++.- -..+|.++.++..+.+.+=+--| ||. ..+..|+.+|.- -.|.-++..+.
T Consensus 219 ~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINva-----RG~lVde~AL~~AL~~g~i~gAaLDV~~~EP 293 (347)
T PLN02928 219 DIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIA-----RGGLLDYDAVLAALESGHLGGLAIDVAWSEP 293 (347)
T ss_pred CHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECC-----CccccCHHHHHHHHHcCCeeEEEEccCCCCC
Confidence 4556667899999863 36789999999998774444444 774 457788888852 24455555544
Q ss_pred CCCCCCeEEEEEEeCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHhCc
Q 020508 267 ELDAGPIIEQMVERVSHRDNL--RTFVQKSEDVEKQCLAKAIKSYCELR 313 (325)
Q Consensus 267 ~~D~G~Ii~Q~~~~I~~~dt~--~~l~~r~~~~~~~ll~~al~~i~~g~ 313 (325)
--..-|.+....+-+.|.-.. .+..+++ .+.+.+.+..+.+|+
T Consensus 294 ~~~~~pL~~~~nviiTPHia~~t~~~~~~~----~~~~~~nl~~~~~g~ 338 (347)
T PLN02928 294 FDPDDPILKHPNVIITPHVAGVTEYSYRSM----GKIVGDAALQLHAGR 338 (347)
T ss_pred CCCCChhhcCCCEEECCcCCCChHHHHHHH----HHHHHHHHHHHHCCC
Confidence 333346666666666665332 2222333 344556666777775
No 267
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=51.64 E-value=1.5e+02 Score=25.00 Aligned_cols=14 Identities=21% Similarity=0.185 Sum_probs=8.1
Q ss_pred CCCCCCCcHHHHHH
Q 020508 237 LPSFKGGKPAKQAF 250 (325)
Q Consensus 237 LP~yRG~~pi~~ai 250 (325)
.|--.|-.|+.-|.
T Consensus 117 tPvpgGVGp~T~a~ 130 (140)
T cd05212 117 VPMTGGVGKLTVAM 130 (140)
T ss_pred cCCCCCchHHHHHH
Confidence 45556767765553
No 268
>PRK06683 hypothetical protein; Provisional
Probab=51.56 E-value=69 Score=24.46 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=27.9
Q ss_pred EEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEec
Q 020508 134 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 134 ~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~ 188 (325)
+++|.-..+++ ++.|+ ...+.|-.+-+.....++..+|+.++||++.++
T Consensus 12 ~v~G~~~v~ka----ik~gk--aklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~ 60 (82)
T PRK06683 12 VVVGHKRTLEA----IKNGI--VKEVVIAEDADMRLTHVIIRTALQHNIPITKVE 60 (82)
T ss_pred EEEcHHHHHHH----HHcCC--eeEEEEECCCCHHHHHHHHHHHHhcCCCEEEEC
Confidence 34554444444 44443 444444333321112457889999999998876
No 269
>PLN02551 aspartokinase
Probab=51.41 E-value=48 Score=34.21 Aligned_cols=62 Identities=13% Similarity=0.118 Sum_probs=44.3
Q ss_pred ceEEEEEEcC--CCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhh
Q 020508 41 THGIHVFHCP--DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF 113 (325)
Q Consensus 41 ~~~~ltv~g~--DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l 113 (325)
.-.+++++|. .++|+.+++-+.|++.|+||.-++|.. .. ..+.+-+++ ++..+++..+-+.|
T Consensus 444 ~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqga----Se--inIS~vV~~-----~d~~~Av~aLH~~F 507 (521)
T PLN02551 444 GRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGA----SK--VNISLIVND-----DEAEQCVRALHSAF 507 (521)
T ss_pred CEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecC----CC--cEEEEEEeH-----HHHHHHHHHHHHHH
Confidence 4557888886 689999999999999999999888732 11 233443443 45666666666666
No 270
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=51.26 E-value=1.4e+02 Score=29.62 Aligned_cols=140 Identities=13% Similarity=0.109 Sum_probs=73.0
Q ss_pred eEEEEE--eCCc--hHHHHHHHHhhcC--CCCceEEEEEeCCCCCC-CchHHHHHHHCCCCEEEecCCCChhHHHHHHHh
Q 020508 130 KVAVLA--SKQE--HCLVDFLYGWQEG--KLPVEITCVISNHDRGP-NSHVIRFLERHGIPYHYLCAKENEREEELLELV 202 (325)
Q Consensus 130 ri~v~~--Sg~g--~~l~~Ll~~~~~~--~l~~~I~~Vvt~~~~~~-~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l 202 (325)
++++|+ +|.| +.+..|...+... .-+..|..|-++.-+.. ...+..+|+..|+|+..... .+++.+.+
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~-----~~~l~~~L 249 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIES-----FKDLKEEI 249 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCc-----HHHHHHHH
Confidence 455554 3444 4555555443311 11345554444443211 13478889999999975441 12344433
Q ss_pred ---cCCCEEEEeccccccChh-HHhhc----C-CC-EEEEcCCCCCCCCCCcHHHHHHHhC--CcEeEEEEEEecCCCCC
Q 020508 203 ---QNTDFLVLARYMQILSGK-FLRSY----G-KD-VINIHHGLLPSFKGGKPAKQAFDAG--VKLIGATSHFVTEELDA 270 (325)
Q Consensus 203 ---~~~Dliv~~g~~~il~~~-~l~~~----~-~~-~iNiHpslLP~yRG~~pi~~ai~~G--~~~~GvTvh~v~~~~D~ 270 (325)
.+.|++++=..++.-... -++.. . .. -...| =-|+.--|..-+...+.+- ...+|+=+=++|+.---
T Consensus 250 ~~~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~-LVlsat~~~~~~~~~~~~~~~~~~~~~I~TKlDet~~~ 328 (388)
T PRK12723 250 TQSKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFH-LAVSSTTKTSDVKEIFHQFSPFSYKTVIFTKLDETTCV 328 (388)
T ss_pred HHhCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEE-EEEcCCCCHHHHHHHHHHhcCCCCCEEEEEeccCCCcc
Confidence 378999987666543321 11111 1 00 00111 1235556666666555443 44688888888888777
Q ss_pred CCeEE
Q 020508 271 GPIIE 275 (325)
Q Consensus 271 G~Ii~ 275 (325)
|.++.
T Consensus 329 G~~l~ 333 (388)
T PRK12723 329 GNLIS 333 (388)
T ss_pred hHHHH
Confidence 76654
No 271
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=50.99 E-value=2.8e+02 Score=28.09 Aligned_cols=77 Identities=18% Similarity=0.078 Sum_probs=49.4
Q ss_pred CCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhccc---ceeeeecCCCCCceEEEEEeCCchHHHHHHHHhhcCCCC
Q 020508 79 EKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM---RSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLP 155 (325)
Q Consensus 79 ~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~---~~~~~~~~~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~ 155 (325)
+..|.|...++-.-|. ....|..+|+++-+.|-.+ ......|-+.-|.+|+|+.|..|..+++++..++.....
T Consensus 86 ~~rG~YQi~~~~~~p~---G~G~L~~~~E~lK~kL~aEGlFd~~~KkpLP~~p~~IGVITS~tgAairDIl~~~~rR~P~ 162 (440)
T COG1570 86 EPRGDYQIVAESMEPA---GLGALYLAFEQLKAKLAAEGLFDPERKKPLPFFPKKIGVITSPTGAALRDILHTLSRRFPS 162 (440)
T ss_pred cCCCceEEEEecCCcC---ChhHHHHHHHHHHHHHHhCCCcChhhcCCCCCCCCeEEEEcCCchHHHHHHHHHHHhhCCC
Confidence 5578887666655554 3566777777665444322 222333444567899999999999999999876544333
Q ss_pred ceE
Q 020508 156 VEI 158 (325)
Q Consensus 156 ~~I 158 (325)
.+|
T Consensus 163 ~~v 165 (440)
T COG1570 163 VEV 165 (440)
T ss_pred CeE
Confidence 443
No 272
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=50.60 E-value=20 Score=29.27 Aligned_cols=34 Identities=6% Similarity=0.240 Sum_probs=21.4
Q ss_pred ceEEEEEe-CC-chHHHHHHHHhhcCCCCceEEEEEeCCC
Q 020508 129 YKVAVLAS-KQ-EHCLVDFLYGWQEGKLPVEITCVISNHD 166 (325)
Q Consensus 129 ~ri~v~~S-g~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~ 166 (325)
+||++.+. |+ |+.+...+.. .+ +.++++++..++
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~--~~--~~~lv~~v~~~~ 36 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILE--SP--GFELVGAVDRKP 36 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHH--ST--TEEEEEEEETTT
T ss_pred CEEEEECCCCHHHHHHHHHHHh--cC--CcEEEEEEecCC
Confidence 58888775 54 5544444332 12 589999988765
No 273
>PRK13530 arsenate reductase; Provisional
Probab=50.24 E-value=90 Score=25.81 Aligned_cols=77 Identities=16% Similarity=0.221 Sum_probs=39.8
Q ss_pred CceEEEEEeCCc--hHHHH-HHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcC
Q 020508 128 KYKVAVLASKQE--HCLVD-FLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQN 204 (325)
Q Consensus 128 ~~ri~v~~Sg~g--~~l~~-Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~ 204 (325)
++||.|+..|+- |.+.+ ++.....+.+.+.-.++ .. .+.+....+.++++||++.....+ ... ++ .+..
T Consensus 3 ~~~vLFvC~~N~cRS~mAEal~~~~~~~~~~v~SAG~--~~-~~~~~~a~~~l~e~Gi~~~~~~s~-~l~-~~---~~~~ 74 (133)
T PRK13530 3 KKTIYFLCTGNSCRSQMAEGWGKQYLGDKWNVYSAGI--EA-HGVNPNAIKAMKEVGIDISNQTSD-IID-ND---ILNN 74 (133)
T ss_pred CCEEEEEcCCchhHHHHHHHHHHHhcCCCEEEECCCC--CC-CCCCHHHHHHHHHcCCCcCCCccc-cCC-hh---Hhcc
Confidence 568888877764 44544 55443222211111121 11 123456788899999997422111 111 11 2237
Q ss_pred CCEEEEec
Q 020508 205 TDFLVLAR 212 (325)
Q Consensus 205 ~Dliv~~g 212 (325)
+|+||...
T Consensus 75 ~D~ii~m~ 82 (133)
T PRK13530 75 ADLVVTLC 82 (133)
T ss_pred CCEEEEec
Confidence 89999875
No 274
>PRK13365 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=50.03 E-value=28 Score=32.83 Aligned_cols=74 Identities=12% Similarity=0.175 Sum_probs=45.3
Q ss_pred HHHHHhc--CCCEEEEeccccccChhH-HhhcCCCEEEEcCCC-C----------CCCCCCcHHHHHHHhCCcEeEEEEE
Q 020508 197 ELLELVQ--NTDFLVLARYMQILSGKF-LRSYGKDVINIHHGL-L----------PSFKGGKPAKQAFDAGVKLIGATSH 262 (325)
Q Consensus 197 ~~~~~l~--~~Dliv~~g~~~il~~~~-l~~~~~~~iNiHpsl-L----------P~yRG~~pi~~ai~~G~~~~GvTvh 262 (325)
++-+.++ +||++|+.+-.+.. .+ .+..+.-+|+..+++ + +.++|.-.+.+.|.......|+.+.
T Consensus 39 ~i~~~v~~~~PDviVvi~sdH~~--~f~~d~~p~f~Ig~~~~~~~~~~g~~~~~~~~~~g~~eLA~~i~~~~~~~g~~~~ 116 (279)
T PRK13365 39 PVAAWLAEQKADVLVFFYNDHCT--TFFFDLYPTFALGVGERFPVADEGAGLRPLPPIRGDVQLQAHIAECLVNDEFDLT 116 (279)
T ss_pred HHHHHHHHhCCCEEEEEcCchHH--HhccccCCceEEEecccccccccccCCCCCCCCCCCHHHHHHHHHHHHHcCCCee
Confidence 4555554 89999999765552 22 444344467777776 3 4466666777777665555555554
Q ss_pred EecC-CCCCCC
Q 020508 263 FVTE-ELDAGP 272 (325)
Q Consensus 263 ~v~~-~~D~G~ 272 (325)
...+ ++|.|-
T Consensus 117 ~~~~~~lDHG~ 127 (279)
T PRK13365 117 VFQDKPIDHGC 127 (279)
T ss_pred eccCCCCCchh
Confidence 4433 578664
No 275
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=49.88 E-value=1.3e+02 Score=26.75 Aligned_cols=99 Identities=16% Similarity=0.203 Sum_probs=51.0
Q ss_pred CCceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhc--
Q 020508 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-- 203 (325)
Q Consensus 127 ~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~-- 203 (325)
.++||++++.|. |..+...+. ....+.++++++...+.. ... .-.|+|+... +++.+.++
T Consensus 83 ~~~rV~IIGaG~iG~~l~~~~~---~~~~g~~ivgv~D~d~~~----~~~--~i~g~~v~~~--------~~l~~li~~~ 145 (213)
T PRK05472 83 RTWNVALVGAGNLGRALLNYNG---FEKRGFKIVAAFDVDPEK----IGT--KIGGIPVYHI--------DELEEVVKEN 145 (213)
T ss_pred CCcEEEEECCCHHHHHHHHhhh---cccCCcEEEEEEECChhh----cCC--EeCCeEEcCH--------HHHHHHHHHC
Confidence 457899988775 444443321 223468999988754211 000 1135665311 23555554
Q ss_pred CCCEEEEecccccc---ChhHHhhcCCCEEEEcCCCCCCCCC
Q 020508 204 NTDFLVLARYMQIL---SGKFLRSYGKDVINIHHGLLPSFKG 242 (325)
Q Consensus 204 ~~Dliv~~g~~~il---~~~~l~~~~~~~iNiHpslLP~yRG 242 (325)
++|.++++.=..-. -..+++.-...++|..|-.+---+|
T Consensus 146 ~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~ 187 (213)
T PRK05472 146 DIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPED 187 (213)
T ss_pred CCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCC
Confidence 68988777422111 1222222234678887776544443
No 276
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=49.78 E-value=1.5e+02 Score=27.70 Aligned_cols=34 Identities=15% Similarity=0.381 Sum_probs=22.2
Q ss_pred hHHHHHHHCCCCEEEecCCCChhHHHHHHHhc---CCCEEEE
Q 020508 172 HVIRFLERHGIPYHYLCAKENEREEELLELVQ---NTDFLVL 210 (325)
Q Consensus 172 ~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~---~~Dliv~ 210 (325)
.+..+++..|+|+.... ...++.+.++ +.|++++
T Consensus 242 ql~~~~~~~~~p~~~~~-----~~~~l~~~l~~~~~~d~vli 278 (282)
T TIGR03499 242 QLKTYAKILGVPVKVAR-----DPKELRKALDRLRDKDLILI 278 (282)
T ss_pred HHHHHHHHhCCceeccC-----CHHHHHHHHHHccCCCEEEE
Confidence 46778899999997533 1234444443 6898876
No 277
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=49.46 E-value=1.9e+02 Score=27.49 Aligned_cols=164 Identities=10% Similarity=0.053 Sum_probs=84.3
Q ss_pred eEEEEEEcCCCcchHH--HHHHHHHhcCCeEeEeeee--c---------c---CCCCeEEEEEEEEeCCCCCChHHHHHH
Q 020508 42 HGIHVFHCPDEVGIVA--KLSECIASRGGNILAADVF--V---------P---EKKNVFYSRSEFIFDPIKWPREQMDED 105 (325)
Q Consensus 42 ~~~ltv~g~DrpGIVa--~Vt~~La~~giNI~~l~~~--~---------~---~~~g~F~~~~~v~~p~~~~~~~~L~~~ 105 (325)
++.+..+|.|-.-.++ .--+...+.|++.....-. + . .....--+.+..=+|+ +.+...+.++
T Consensus 34 ~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~LN~D~~V~GIlvqlPLP~-~id~~~i~~~ 112 (288)
T PRK14171 34 KLAIVLVGDNPASIIYVKNKIKNAHKIGIDTLLVNLSTTIHTNDLISKINELNLDNEISGIIVQLPLPS-SIDKNKILSA 112 (288)
T ss_pred eEEEEEeCCCccHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCEEEEeCCCCC-CCCHHHHHhc
Confidence 5666677766555544 4556777778776543311 1 0 0111222223333344 3444433333
Q ss_pred HHhhhhhhcccceeeeecCCCCCceEEEEEeCC--------chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHH
Q 020508 106 FFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQ--------EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFL 177 (325)
Q Consensus 106 l~~l~~~l~~~~~~~~~~~~~~~~ri~v~~Sg~--------g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a 177 (325)
+.. +-++|- +. +.+.+-+..|. .....+||+...- .+...=+.|+ .+...-+.|+..+.
T Consensus 113 I~p---~KDVDG----l~----~~N~g~l~~g~~~~~~PcTp~av~~lL~~y~i-~l~GK~vvVi-GrS~iVGkPla~lL 179 (288)
T PRK14171 113 VSP---SKDIDG----FH----PLNVGYLHSGISQGFIPCTALGCLAVIKKYEP-NLTGKNVVII-GRSNIVGKPLSALL 179 (288)
T ss_pred cCc---cccccc----CC----ccchhhhhcCCCCCCcCCCHHHHHHHHHHhCC-CCCCCEEEEE-CCCCcchHHHHHHH
Confidence 332 333332 11 23344444442 1234556666432 2222334445 44433477888888
Q ss_pred HHCCCCEEEecCCCChhHHHHHHHhcCCCEEEEe-ccccccChhHHh
Q 020508 178 ERHGIPYHYLCAKENEREEELLELVQNTDFLVLA-RYMQILSGKFLR 223 (325)
Q Consensus 178 ~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dliv~~-g~~~il~~~~l~ 223 (325)
.+.|.-+....++ ...+.+..+++|++|++ |-..+++++.+.
T Consensus 180 ~~~~ATVtichs~----T~~L~~~~~~ADIvV~AvGkp~~i~~~~vk 222 (288)
T PRK14171 180 LKENCSVTICHSK----THNLSSITSKADIVVAAIGSPLKLTAEYFN 222 (288)
T ss_pred HHCCCEEEEeCCC----CCCHHHHHhhCCEEEEccCCCCccCHHHcC
Confidence 8888777644422 12355556689998887 788899988764
No 278
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=49.43 E-value=1.5e+02 Score=28.80 Aligned_cols=78 Identities=18% Similarity=0.304 Sum_probs=49.7
Q ss_pred ceEEEEEeCCc--hHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCCh----------hHH
Q 020508 129 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENE----------REE 196 (325)
Q Consensus 129 ~ri~v~~Sg~g--~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~----------~~~ 196 (325)
|||.|-+.... +-++.++..+++. +++|. ||.++. ..+.++++.+|+++..+.+.... +.-
T Consensus 1 MkIwiDi~~p~hvhfFk~~I~eL~~~--GheV~--it~R~~---~~~~~LL~~yg~~y~~iG~~g~~~~~Kl~~~~~R~~ 73 (335)
T PF04007_consen 1 MKIWIDITHPAHVHFFKNIIRELEKR--GHEVL--ITARDK---DETEELLDLYGIDYIVIGKHGDSLYGKLLESIERQY 73 (335)
T ss_pred CeEEEECCCchHHHHHHHHHHHHHhC--CCEEE--EEEecc---chHHHHHHHcCCCeEEEcCCCCCHHHHHHHHHHHHH
Confidence 46666665544 4667788877654 47754 444432 35789999999999988732221 123
Q ss_pred HHHHHhc--CCCEEEEecc
Q 020508 197 ELLELVQ--NTDFLVLARY 213 (325)
Q Consensus 197 ~~~~~l~--~~Dliv~~g~ 213 (325)
++.+.++ +||++++.+-
T Consensus 74 ~l~~~~~~~~pDv~is~~s 92 (335)
T PF04007_consen 74 KLLKLIKKFKPDVAISFGS 92 (335)
T ss_pred HHHHHHHhhCCCEEEecCc
Confidence 4445554 7999997654
No 279
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=49.38 E-value=73 Score=31.24 Aligned_cols=57 Identities=18% Similarity=0.020 Sum_probs=36.9
Q ss_pred CCceEEEEEeCCc-h-HHHHHHHHhhcCCCCceEEEEEeCCCCC--CC---chHHHHHHHCCCCEEEec
Q 020508 127 PKYKVAVLASKQE-H-CLVDFLYGWQEGKLPVEITCVISNHDRG--PN---SHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 127 ~~~ri~v~~Sg~g-~-~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~--~~---~~~~~~a~~~gIp~~~~~ 188 (325)
+..||+|..||.- | .+..|+.. . +.++.+|..+.... .. ..+.++|+++|||++.++
T Consensus 4 ~~~kVlValSGGVDSsvaa~LL~~--~---G~~V~~v~~~~~~~~~~~~d~~~a~~va~~LgIp~~vvd 67 (360)
T PRK14665 4 KNKRVLLGMSGGTDSSVAAMLLLE--A---GYEVTGVTFRFYEFNGSTEYLEDARALAERLGIGHITYD 67 (360)
T ss_pred CCCEEEEEEcCCHHHHHHHHHHHH--c---CCeEEEEEEecCCCCCChHHHHHHHHHHHHhCCCEEEEe
Confidence 3469999999963 4 44445543 2 46788886643111 11 236889999999998876
No 280
>PLN03139 formate dehydrogenase; Provisional
Probab=49.31 E-value=2.8e+02 Score=27.53 Aligned_cols=159 Identities=10% Similarity=0.111 Sum_probs=85.9
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCC
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 206 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 206 (325)
-++|+|++-|. |..+...+.. .+.+|. +.++... . .+..++.|+... . ++.+++.++|
T Consensus 199 gktVGIVG~G~IG~~vA~~L~a-----fG~~V~--~~d~~~~-~---~~~~~~~g~~~~--~--------~l~ell~~sD 257 (386)
T PLN03139 199 GKTVGTVGAGRIGRLLLQRLKP-----FNCNLL--YHDRLKM-D---PELEKETGAKFE--E--------DLDAMLPKCD 257 (386)
T ss_pred CCEEEEEeecHHHHHHHHHHHH-----CCCEEE--EECCCCc-c---hhhHhhcCceec--C--------CHHHHHhhCC
Confidence 46899999876 6655555543 245653 2343210 1 223344555432 1 2344555789
Q ss_pred EEEEec-----cccccChhHHhhcCCCEEEEcCCCCCCCCCC----cHHHHHHHhCCc-EeEEEEEEecCCCCCCCeEEE
Q 020508 207 FLVLAR-----YMQILSGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQAFDAGVK-LIGATSHFVTEELDAGPIIEQ 276 (325)
Q Consensus 207 liv~~g-----~~~il~~~~l~~~~~~~iNiHpslLP~yRG~----~pi~~ai~~G~~-~~GvTvh~v~~~~D~G~Ii~Q 276 (325)
++++.- ...++.++.++..+.+.+=+=-| ||. ..+..|+.+|.- -.|.-+++-.+--..-|.+..
T Consensus 258 vV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~a-----RG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d~pL~~~ 332 (386)
T PLN03139 258 VVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNA-----RGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYM 332 (386)
T ss_pred EEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECC-----CCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCCCChhhcC
Confidence 988763 24567788888887664333333 774 456777888842 244455555443333455555
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCce
Q 020508 277 MVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRV 314 (325)
Q Consensus 277 ~~~~I~~~dt~~~l~~r~~~~~~~ll~~al~~i~~g~~ 314 (325)
..+-+.|.-...+.. ......+.+.+.+..+.+|+-
T Consensus 333 pNvilTPHiag~t~~--~~~r~~~~~~~nl~~~~~G~~ 368 (386)
T PLN03139 333 PNHAMTPHISGTTID--AQLRYAAGVKDMLDRYFKGED 368 (386)
T ss_pred CCeEEcccccccCHH--HHHHHHHHHHHHHHHHHcCCC
Confidence 566666654332221 122234455666777777763
No 281
>COG2243 CobF Precorrin-2 methylase [Coenzyme metabolism]
Probab=49.28 E-value=1.3e+02 Score=27.72 Aligned_cols=111 Identities=19% Similarity=0.188 Sum_probs=67.7
Q ss_pred EEEEeCCCCCC-hHHHHHHHHhhhhhhcccceeeeecCCCCCceEEEEEeCCc---hHHHHHHHHhhcCCCCceEEEEEe
Q 020508 88 SEFIFDPIKWP-REQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQE---HCLVDFLYGWQEGKLPVEITCVIS 163 (325)
Q Consensus 88 ~~v~~p~~~~~-~~~L~~~l~~l~~~l~~~~~~~~~~~~~~~~ri~v~~Sg~g---~~l~~Ll~~~~~~~l~~~I~~Vvt 163 (325)
..+.+|- ..+ .++++...++.+++.-.. ++ .-+.+||+.-|.. +.+-.|+++++......+++-=|
T Consensus 58 ~~l~fPm-~~~~~e~~~~~~~e~a~~va~~---l~-----~G~~VAf~~lGDP~~YsTf~~l~~~l~~~~~e~e~VPGV- 127 (234)
T COG2243 58 VELHFPM-TTDMREELEDAWEEAAAEVAAE---LE-----AGRDVAFLTLGDPTFYSTFMYLLERLRERGFEVEVVPGV- 127 (234)
T ss_pred eEEEecc-CCchHHHHHHHHHHHHHHHHHH---HH-----cCCeEEEEEccCccHHHHHHHHHHHhhccCCceEEeCCc-
Confidence 4445555 445 677777777777664211 11 3468999988864 67777888876543444443223
Q ss_pred CCCCCCCchHHHHHHHCCCCEEEecCC-----CChhHHHHHHHhcCCCEEEEecccc
Q 020508 164 NHDRGPNSHVIRFLERHGIPYHYLCAK-----ENEREEELLELVQNTDFLVLARYMQ 215 (325)
Q Consensus 164 ~~~~~~~~~~~~~a~~~gIp~~~~~~~-----~~~~~~~~~~~l~~~Dliv~~g~~~ 215 (325)
+.+...|.++|+|+..-+.. ....+.++.+.+...|.+|+.--++
T Consensus 128 -------sS~~a~aa~~~~pL~~g~~~l~Vlp~t~~~~~~~~~l~~~d~~VvMK~~~ 177 (234)
T COG2243 128 -------SSFSACAARLGVPLVEGDDSLSVLPATRPDEELERALADFDTAVVMKVGR 177 (234)
T ss_pred -------chHHHHHHHhCCceeccCceeEEEeccCchhhHHhHHhhCCeEEEEecCC
Confidence 35688999999999754421 1122345555666788888765544
No 282
>PF07485 DUF1529: Domain of Unknown Function (DUF1259); InterPro: IPR011094 This family is the lppY/lpqO homologue family. They are related to 'probable conserved lipoproteins' LppY and LpqO from Mycobacterium bovis.
Probab=48.87 E-value=34 Score=28.34 Aligned_cols=89 Identities=13% Similarity=0.033 Sum_probs=52.9
Q ss_pred eeeeeecccccCCccccccCCCCCCCCcceEEEEEEcCCC------------cchHHHHHHHHHhcCCeEeEeeeeccCC
Q 020508 13 QVVKFTNRSFKSLKFPGEPIESSVSPTLTHGIHVFHCPDE------------VGIVAKLSECIASRGGNILAADVFVPEK 80 (325)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ltv~g~Dr------------pGIVa~Vt~~La~~giNI~~l~~~~~~~ 80 (325)
.|++.+..| .++++++.-. ..+++..-.-.+++.+.+. .-=|..|.+.|.++|+.|..+..+--..
T Consensus 17 gv~~v~~~R-~dl~vt~~G~-~~~~~~~l~~~~aF~~~~~G~A~~~Gd~vll~~EV~pvi~aL~~~GI~vtAlHNH~l~e 94 (123)
T PF07485_consen 17 GVYKVTIPR-NDLKVTIDGR-RLPPPMGLTSWIAFEPDGDGKAMVMGDFVLLEDEVNPVISALRKNGIEVTALHNHWLFE 94 (123)
T ss_pred CEEEEEEcc-CCceEEECCE-EcCCccccceeEEEEECCCCcEEEeecEEecHHHHHHHHHHHHHCCceEEEEecccccC
Confidence 344444333 2444444322 2333444555666666222 2358899999999999999999975333
Q ss_pred C-CeEEEEEEEEeCCCCCChHHHHHHHHh
Q 020508 81 K-NVFYSRSEFIFDPIKWPREQMDEDFFK 108 (325)
Q Consensus 81 ~-g~F~~~~~v~~p~~~~~~~~L~~~l~~ 108 (325)
. .+|+|.+.-.- +...|...+.+
T Consensus 95 ~Prl~ymH~~~~g-----dp~~lA~~vr~ 118 (123)
T PF07485_consen 95 QPRLFYMHIWGVG-----DPAKLARKVRA 118 (123)
T ss_pred CCCEEEEEEEecC-----CHHHHHHHHHH
Confidence 3 49998888633 34555555443
No 283
>PRK14561 hypothetical protein; Provisional
Probab=48.66 E-value=42 Score=29.74 Aligned_cols=54 Identities=20% Similarity=0.160 Sum_probs=31.9
Q ss_pred ceEEEEEeCCc-h-HHHHHHHHhhcCCCCceEEEEEeCCC-CCCCchHHHHHHHCCCCEEEec
Q 020508 129 YKVAVLASKQE-H-CLVDFLYGWQEGKLPVEITCVISNHD-RGPNSHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 129 ~ri~v~~Sg~g-~-~l~~Ll~~~~~~~l~~~I~~Vvt~~~-~~~~~~~~~~a~~~gIp~~~~~ 188 (325)
|||+|+.||.- | .+..++... .++.++-.+.. ...-..+.+.|+++|+|.+.++
T Consensus 1 mkV~ValSGG~DSslll~~l~~~------~~v~a~t~~~g~~~e~~~a~~~a~~lGi~~~~v~ 57 (194)
T PRK14561 1 MKAGVLFSGGKDSSLAAILLERF------YDVELVTVNFGVLDSWKHAREAAKALGFPHRVLE 57 (194)
T ss_pred CEEEEEEechHHHHHHHHHHHhc------CCeEEEEEecCchhHHHHHHHHHHHhCCCEEEEE
Confidence 68999999862 3 333333221 23444422222 1112357889999999998776
No 284
>COG3007 Uncharacterized paraquat-inducible protein B [Function unknown]
Probab=48.48 E-value=1.3e+02 Score=28.96 Aligned_cols=87 Identities=17% Similarity=0.223 Sum_probs=53.9
Q ss_pred ecCCCCCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCC---C-------CchHHHHHHHCCCCEEEec-CC
Q 020508 122 VPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRG---P-------NSHVIRFLERHGIPYHYLC-AK 190 (325)
Q Consensus 122 ~~~~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~---~-------~~~~~~~a~~~gIp~~~~~-~~ 190 (325)
.|-.+-|+||.|+++.+|-.|..=+.+ .-| .++.-.+|.-.++.. + +..+.++|++.|.=...+. ..
T Consensus 35 gp~~ngPKkVLviGaSsGyGLa~RIsa-aFG-~gAdTiGVffE~pgte~~~gtagwyn~~~f~~~A~~kGlyAksingDa 112 (398)
T COG3007 35 GPIKNGPKKVLVIGASSGYGLAARISA-AFG-PGADTIGVFFERPGTERKPGTAGWYNNAAFKKFAKQKGLYAKSINGDA 112 (398)
T ss_pred CCccCCCceEEEEecCCcccHHHHHHH-HhC-CCCceeeEEeecCCccCCCcchhhhHHHHHHHHHHhcCceeeecccch
Confidence 455556899999998888776664433 223 246677887655321 1 1457899999998766554 22
Q ss_pred CChhH--HHHHHHhc----CCCEEEEe
Q 020508 191 ENERE--EELLELVQ----NTDFLVLA 211 (325)
Q Consensus 191 ~~~~~--~~~~~~l~----~~Dliv~~ 211 (325)
. +++ +..++.++ ++||+|..
T Consensus 113 F-S~e~k~kvIe~Ik~~~g~vDlvvYS 138 (398)
T COG3007 113 F-SDEMKQKVIEAIKQDFGKVDLVVYS 138 (398)
T ss_pred h-hHHHHHHHHHHHHHhhccccEEEEe
Confidence 1 111 34555554 78998853
No 285
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=48.09 E-value=96 Score=28.95 Aligned_cols=73 Identities=16% Similarity=0.201 Sum_probs=39.8
Q ss_pred CCceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCC
Q 020508 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (325)
Q Consensus 127 ~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 205 (325)
+++||++++.|. |..+...+ .....++++++|.... .....++++++|++..+.+ .+++ +.++
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L---~~~~~~~el~aV~dr~----~~~a~~~a~~~g~~~~~~~------~eel---l~~~ 68 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQAL---DRGLPGLTLSAVAVRD----PQRHADFIWGLRRPPPVVP------LDQL---ATHA 68 (271)
T ss_pred CeeEEEEECccHHHHHHHHHH---HhcCCCeEEEEEECCC----HHHHHHHHHhcCCCcccCC------HHHH---hcCC
Confidence 358999999886 44433322 2211246777665432 2345677888886532211 1222 3367
Q ss_pred CEEEEecccc
Q 020508 206 DFLVLARYMQ 215 (325)
Q Consensus 206 Dliv~~g~~~ 215 (325)
|+++.+.-..
T Consensus 69 D~Vvi~tp~~ 78 (271)
T PRK13302 69 DIVVEAAPAS 78 (271)
T ss_pred CEEEECCCcH
Confidence 7777765433
No 286
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=47.77 E-value=70 Score=28.04 Aligned_cols=124 Identities=11% Similarity=0.113 Sum_probs=70.2
Q ss_pred chhhhccccceeeeeecccccCCccccccCCCCCCCCcceEEEEEEcCCCcc----hHHHHHHHHHhcCCeEeEeeeecc
Q 020508 3 LLRRLSSSLQQVVKFTNRSFKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVG----IVAKLSECIASRGGNILAADVFVP 78 (325)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ltv~g~DrpG----IVa~Vt~~La~~giNI~~l~~~~~ 78 (325)
+|+.|+..+.. ......+++++-+++.+- +...---.+-.+.++|.-..- -+.++.+.|.+.|.... ...+
T Consensus 18 dL~~la~~~~n-~eYePe~fpgli~Rl~~P-k~t~lIF~SGKiviTGaks~e~a~~a~~~i~~~L~~~g~~~~-~~~~-- 92 (174)
T cd04516 18 DLKKIALRARN-AEYNPKRFAAVIMRIREP-KTTALIFSSGKMVCTGAKSEDDSKLAARKYARIIQKLGFPAK-FTDF-- 92 (174)
T ss_pred cHHHHHhhCCC-CEECCccCcEEEEEeCCC-cEEEEEECCCeEEEEecCCHHHHHHHHHHHHHHHHHcCCCCC-CCce--
Confidence 35666666555 455566778887776432 110011122356677854443 45678888988887652 2111
Q ss_pred CCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhccc---ceeeeecCCCCCceEEEEEeCC
Q 020508 79 EKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM---RSVVRVPDIDPKYKVAVLASKQ 138 (325)
Q Consensus 79 ~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~---~~~~~~~~~~~~~ri~v~~Sg~ 138 (325)
-.=.+...+++|- +.+++.+.....+.+ +++.+ -.++|+.. ++..+.+|.||.
T Consensus 93 ---~v~Nivat~~l~~-~i~L~~la~~~~~~~-~YePE~fPgliyr~~~--pk~~~liF~sGk 148 (174)
T cd04516 93 ---KIQNIVGSCDVKF-PIRLEGLAHAHKQFS-SYEPELFPGLIYRMVK--PKIVLLIFVSGK 148 (174)
T ss_pred ---EEEEEEEEEECCC-cccHHHHHHhChhcc-EeCCccCceEEEEecC--CcEEEEEeCCCE
Confidence 1224567778887 788888876322222 12111 12355554 677899999886
No 287
>PF04359 DUF493: Protein of unknown function (DUF493); InterPro: IPR007454 This family includes several proteins of uncharacterised function.; PDB: 1RWU_A 2JOQ_A 2H9Z_A.
Probab=47.54 E-value=44 Score=25.38 Aligned_cols=72 Identities=13% Similarity=0.041 Sum_probs=47.1
Q ss_pred CcceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeecc-CCCCeE-EEEEEEEeCCCCCChHHHHHHHHhhhhhhc
Q 020508 39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP-EKKNVF-YSRSEFIFDPIKWPREQMDEDFFKLSKMFN 114 (325)
Q Consensus 39 ~~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~-~~~g~F-~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~ 114 (325)
.+..|.+.++|.+..+.+++|..++.++-.++.+...... .-.|.| ...+.+.+. +.+++.+-+.++.+.=+
T Consensus 7 fP~~y~~KvIg~~~~~~~~~v~~iv~~~~~~~~~~~~~~k~S~~GkY~Svtv~v~v~----s~eq~~~iy~~L~~~~~ 80 (85)
T PF04359_consen 7 FPCDYPFKVIGKAEEDFVEAVKEIVEKHAPEFDDEKVSSKPSSKGKYVSVTVSVTVE----SAEQVDAIYRELKAHPG 80 (85)
T ss_dssp SSCEEEEEEEEC-STTHHHHHCCCCCCHSS--SSEEEEECCSTTSSEEEEEEEEEES----SHHHHHHHHHHHTTSSS
T ss_pred CCCcceEEEEEECcHhHHHHHHHHHHHhCCcCccCceEEecCCCCeEEEEEEEEEEC----CHHHHHHHHHHhccCCC
Confidence 4567999999999999999999999887654433333222 334655 334444443 47888888888876443
No 288
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=46.98 E-value=82 Score=27.42 Aligned_cols=84 Identities=20% Similarity=0.307 Sum_probs=44.8
Q ss_pred ceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHH-HHHHCCCCEEEecCCCChhHHHHHHHhcCCC
Q 020508 129 YKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIR-FLERHGIPYHYLCAKENEREEELLELVQNTD 206 (325)
Q Consensus 129 ~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~-~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 206 (325)
++++|++.|. |..+..-+.. ++..|. |+..+ |+.. .|...|..+.. +.+.+..+|
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~-----~Ga~V~--V~e~D-----Pi~alqA~~dGf~v~~-----------~~~a~~~ad 80 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRG-----LGARVT--VTEID-----PIRALQAAMDGFEVMT-----------LEEALRDAD 80 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHH-----TT-EEE--EE-SS-----HHHHHHHHHTT-EEE------------HHHHTTT-S
T ss_pred CEEEEeCCCcccHHHHHHHhh-----CCCEEE--EEECC-----hHHHHHhhhcCcEecC-----------HHHHHhhCC
Confidence 5788877664 4443333332 245543 44433 3333 34556666541 334556889
Q ss_pred EEEEe-ccccccChhHHhhcCCCEEEEcCC
Q 020508 207 FLVLA-RYMQILSGKFLRSYGKDVINIHHG 235 (325)
Q Consensus 207 liv~~-g~~~il~~~~l~~~~~~~iNiHps 235 (325)
++|++ |-..+|..+.++..+.++|=.--+
T Consensus 81 i~vtaTG~~~vi~~e~~~~mkdgail~n~G 110 (162)
T PF00670_consen 81 IFVTATGNKDVITGEHFRQMKDGAILANAG 110 (162)
T ss_dssp EEEE-SSSSSSB-HHHHHHS-TTEEEEESS
T ss_pred EEEECCCCccccCHHHHHHhcCCeEEeccC
Confidence 99985 677889999999999998765444
No 289
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=46.88 E-value=1.9e+02 Score=29.09 Aligned_cols=78 Identities=13% Similarity=0.078 Sum_probs=50.4
Q ss_pred CCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcccce---eeeecCCCCCceEEEEEeCCchHHHHHHHHhhcCCCC
Q 020508 79 EKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS---VVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLP 155 (325)
Q Consensus 79 ~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~~---~~~~~~~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~ 155 (325)
+..|.|...++---|. ...+|..+|+++-++|..+-+ .-..|-+.-|.||+|+.|..|..+++++..++.....
T Consensus 80 ~~~G~~ql~v~~i~~~---G~G~l~~~~~~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~aa~~D~~~~~~~r~p~ 156 (432)
T TIGR00237 80 EPRGDYQIICFEMQPA---GEGLLQLAYEQLKEKLAAEGLFDQEYKKPLPHFPKRVGVITSQTGAALADILHILKRRDPS 156 (432)
T ss_pred CCCCcEEEEEEEeccC---ChHHHHHHHHHHHHHHHHCCCCCchhcCCCCCCCCEEEEEeCCccHHHHHHHHHHHhhCCC
Confidence 4456666555433343 367788888877766543322 1234445568999999999999999999877654433
Q ss_pred ceEE
Q 020508 156 VEIT 159 (325)
Q Consensus 156 ~~I~ 159 (325)
+++.
T Consensus 157 ~~~~ 160 (432)
T TIGR00237 157 LKVV 160 (432)
T ss_pred ceEE
Confidence 5554
No 290
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=46.75 E-value=2.4e+02 Score=28.00 Aligned_cols=146 Identities=16% Similarity=0.137 Sum_probs=75.7
Q ss_pred CCChHHHHHHHHhhhhhhcccce--eeee-----------cCCCCCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEE
Q 020508 96 KWPREQMDEDFFKLSKMFNAMRS--VVRV-----------PDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVI 162 (325)
Q Consensus 96 ~~~~~~L~~~l~~l~~~l~~~~~--~~~~-----------~~~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vv 162 (325)
+...+...+-|..+++-+|.+.. ..+. ...-..+|++|++ .......+.+.+.+ ++.+++.|+
T Consensus 254 p~G~~~t~~~l~~l~~~~g~~~~~~~~~~r~~~~~~~~~~~~~l~gk~v~i~~--~~~~~~~l~~~L~e--~G~~v~~v~ 329 (428)
T cd01965 254 PIGLKATDEFLRALSKLSGKPIPEELERERGRLLDAMLDSHFYLGGKRVAIAG--DPDLLLGLSRFLLE--MGAEPVAAV 329 (428)
T ss_pred CcChHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEc--ChHHHHHHHHHHHH--cCCcceEEE
Confidence 45567777778888877776531 0000 0112357888875 22222223333332 367888888
Q ss_pred eCCCCCCC-chHHHHHHHCCCCEEEecCCCChhHHHHHHHhc--CCCEEEEeccccccChhHHhhcCCCEE---------
Q 020508 163 SNHDRGPN-SHVIRFLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVLARYMQILSGKFLRSYGKDVI--------- 230 (325)
Q Consensus 163 t~~~~~~~-~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~--~~Dliv~~g~~~il~~~~l~~~~~~~i--------- 230 (325)
+....+.. .......+..+++...+. .....++.+.++ +||+++.-++.+-+-.+ ....++
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~d~~el~~~i~~~~pdliig~~~~~~~a~~----~~ip~i~~~~P~~d~ 402 (428)
T cd01965 330 TGTDNPPFEKRMELLASLEGIPAEVVF---VGDLWDLESLAKEEPVDLLIGNSHGRYLARD----LGIPLVRVGFPIFDR 402 (428)
T ss_pred EcCCCchhHHHHHHhhhhcCCCceEEE---CCCHHHHHHHhhccCCCEEEECchhHHHHHh----cCCCEEEecCCchhc
Confidence 86543221 112222333455543332 123356777776 69999998876544332 222333
Q ss_pred -EEcCCCCCCCCCCcHHHHHHHh
Q 020508 231 -NIHHGLLPSFKGGKPAKQAFDA 252 (325)
Q Consensus 231 -NiHpslLP~yRG~~pi~~ai~~ 252 (325)
+.|+..+--|+|..-+..-|.|
T Consensus 403 ~~~~~~~~~Gy~G~~~l~~~i~n 425 (428)
T cd01965 403 LGLHRRPYVGYRGALNLLEEIAN 425 (428)
T ss_pred cccccCCceecHHHHHHHHHHHH
Confidence 3444455557777655444443
No 291
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=46.70 E-value=2e+02 Score=29.60 Aligned_cols=197 Identities=11% Similarity=0.022 Sum_probs=99.9
Q ss_pred ceEEEEEEcC-----CCcchHHHHHHHHHhcCCeEeEeeee---cc---C-CCCeEEEEEE--------------EEeCC
Q 020508 41 THGIHVFHCP-----DEVGIVAKLSECIASRGGNILAADVF---VP---E-KKNVFYSRSE--------------FIFDP 94 (325)
Q Consensus 41 ~~~~ltv~g~-----DrpGIVa~Vt~~La~~giNI~~l~~~---~~---~-~~g~F~~~~~--------------v~~p~ 94 (325)
.+..+.+.|+ -.+|=+.++.+.|.+.|+++.-+-.. .. . ....+...+. +.+|-
T Consensus 157 ~~~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~vn~v~p~g~s~~di~~l~~A~~nivl~~~~g~~~A~~Lee~fGiP~ 236 (519)
T PRK02910 157 ARPSVNLLGPTALGFHHRDDLTELRRLLATLGIDVNVVAPLGASPADLKRLPAAWFNVVLYREIGESAARYLEREFGQPY 236 (519)
T ss_pred CCCeEEEEecCccCCCChhHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhcccCcEEEEeCHHHHHHHHHHHHHHhCCcc
Confidence 4556777776 34688999999999999999764321 10 0 0112221110 00110
Q ss_pred ---CCCChHHHHHHHHhhhhhhcccce------------------eeeecCC--CCCceEEEEEeCCchHHHHHHHHhhc
Q 020508 95 ---IKWPREQMDEDFFKLSKMFNAMRS------------------VVRVPDI--DPKYKVAVLASKQEHCLVDFLYGWQE 151 (325)
Q Consensus 95 ---~~~~~~~L~~~l~~l~~~l~~~~~------------------~~~~~~~--~~~~ri~v~~Sg~g~~l~~Ll~~~~~ 151 (325)
.+...+.-.+-|.++++-+|.+.. .++..+. -..+|++|++ ..+-...+.+.+ .
T Consensus 237 i~~~PiG~~~T~~fL~~la~~~g~~~~~~e~~i~~~~~~~~~l~~~~~~~d~~~l~Gkrv~I~g--d~~~a~~l~~~L-~ 313 (519)
T PRK02910 237 VKTVPIGVGATARFIREVAELLNLDGADLEAFILDGLSAPSRLPWFSRSVDSTYLTGKRVFVFG--DATHAVAAARIL-S 313 (519)
T ss_pred cccccccHHHHHHHHHHHHHHhCCChhhhHHHHHHHHhhhhhhhHHHHhhhhHhhcCCEEEEEc--CcHHHHHHHHHH-H
Confidence 123345555566666666666432 1111111 1236877765 222222222222 2
Q ss_pred CCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhc--CCCEEEEeccccccChhHHhhcCCCE
Q 020508 152 GKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVLARYMQILSGKFLRSYGKDV 229 (325)
Q Consensus 152 ~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~--~~Dliv~~g~~~il~~~~l~~~~~~~ 229 (325)
.+++.+++++.|.... ....+.+..++.+-.+...+ ...++.+.++ +||+++--.+.+-+ .......+
T Consensus 314 ~ElGm~vv~~gt~~~~-~~~~~~~~~~~~~~~~~i~~-----D~~el~~~i~~~~PdliiG~~~er~~----a~~lgiP~ 383 (519)
T PRK02910 314 DELGFEVVGAGTYLRE-DARWVRAAAKEYGDEALITD-----DYLEVEDAIAEAAPELVLGTQMERHS----AKRLGIPC 383 (519)
T ss_pred HhcCCeEEEEecCCcc-hhHHHHHHHHhcCCCeEEec-----CHHHHHHHHHhcCCCEEEEcchHHHH----HHHcCCCE
Confidence 3467888877764321 12335556666664444322 1246667765 89999965544332 22233334
Q ss_pred EEE--------cC-CCCCC--CCCCcHHHHHH
Q 020508 230 INI--------HH-GLLPS--FKGGKPAKQAF 250 (325)
Q Consensus 230 iNi--------Hp-slLP~--yRG~~pi~~ai 250 (325)
+.+ |+ +.-|. |+|..-+...+
T Consensus 384 ~~i~~Pv~~r~~~~~~~p~~Gy~Ga~~l~d~i 415 (519)
T PRK02910 384 AVISAPTHVQDFPARYSPQMGFEGANVIFDTW 415 (519)
T ss_pred EEecccceeecccCCCCCeeehhHHHHHHHHH
Confidence 444 44 32344 88877654443
No 292
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=46.59 E-value=99 Score=30.81 Aligned_cols=81 Identities=16% Similarity=0.246 Sum_probs=45.6
Q ss_pred eEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCC----CCCCCchHHHHHHHCCCCEEEecCCCC--hhHHHHHHHhc
Q 020508 130 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH----DRGPNSHVIRFLERHGIPYHYLCAKEN--EREEELLELVQ 203 (325)
Q Consensus 130 ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~----~~~~~~~~~~~a~~~gIp~~~~~~~~~--~~~~~~~~~l~ 203 (325)
|+.=.++-+-+.+++.-.++..+ ..-+.-|.+.+ ...+-..+.++|+++|+|+++=.-... .+++.+-.+++
T Consensus 134 ~l~EvG~tn~t~~~d~~~AIne~--ta~llkV~s~~~~f~~~l~~~~l~~ia~~~~lpvivD~aSg~~v~~e~~l~~~la 211 (395)
T COG1921 134 KLVEVGTTNRTHLKDYELAINEN--TALLLKVHSSNYGFTGMLSEEELVEIAHEKGLPVIVDLASGALVDKEPDLREALA 211 (395)
T ss_pred EEEEecccCcCCHHHHHHHhccC--CeeEEEEeeccccccccccHHHHHHHHHHcCCCEEEecCCccccccccchhHHHh
Confidence 44444433334555554444333 34566677653 111234589999999999984221110 02445556666
Q ss_pred -CCCEEEEec
Q 020508 204 -NTDFLVLAR 212 (325)
Q Consensus 204 -~~Dliv~~g 212 (325)
++||++..|
T Consensus 212 ~GaDLV~~Sg 221 (395)
T COG1921 212 LGADLVSFSG 221 (395)
T ss_pred cCCCEEEEec
Confidence 899988766
No 293
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=46.15 E-value=1.1e+02 Score=29.63 Aligned_cols=90 Identities=12% Similarity=0.114 Sum_probs=47.8
Q ss_pred ceEEEEEeCCc-hH--HHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEec-CCCCh--h--------
Q 020508 129 YKVAVLASKQE-HC--LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKENE--R-------- 194 (325)
Q Consensus 129 ~ri~v~~Sg~g-~~--l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~-~~~~~--~-------- 194 (325)
+||++-+.|.| |- ..++.+.+++. +++|..|-++..- -.++..++|+|++.++ ..... .
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~~--g~~v~~vg~~~~~-----e~~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 74 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKED--NWDISYIGSHQGI-----EKTIIEKENIPYYSISSGKLRRYFDLKNIKDPF 74 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHhC--CCEEEEEECCCcc-----ccccCcccCCcEEEEeccCcCCCchHHHHHHHH
Confidence 46666555554 43 34455555543 5888877655421 1345567799998775 21110 0
Q ss_pred --HH---HHHHHhc--CCCEEEEeccccccChhHHhhc
Q 020508 195 --EE---ELLELVQ--NTDFLVLARYMQILSGKFLRSY 225 (325)
Q Consensus 195 --~~---~~~~~l~--~~Dliv~~g~~~il~~~~l~~~ 225 (325)
-. .....++ +||+++..|..--+|.-+....
T Consensus 75 ~~~~~~~~~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~ 112 (352)
T PRK12446 75 LVMKGVMDAYVRIRKLKPDVIFSKGGFVSVPVVIGGWL 112 (352)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEecCchhhHHHHHHHHH
Confidence 01 1223343 8999998874333444444444
No 294
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=45.93 E-value=41 Score=25.98 Aligned_cols=46 Identities=13% Similarity=0.221 Sum_probs=27.9
Q ss_pred HHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecC
Q 020508 142 LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 189 (325)
Q Consensus 142 l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~ 189 (325)
....+++++.|. ...+.+-.+-+..--.++..+|++.|||+.++++
T Consensus 18 ~kqt~Kai~kg~--~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V~s 63 (84)
T PRK13600 18 LKETLKALKKDQ--VTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKS 63 (84)
T ss_pred HHHHHHHHhcCC--ceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECC
Confidence 345666666664 3333333222211125789999999999999883
No 295
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=45.91 E-value=76 Score=30.83 Aligned_cols=55 Identities=18% Similarity=0.098 Sum_probs=35.4
Q ss_pred ceEEEEEeCCc-h-HHHHHHHHhhcCCCCceEEEEEeCCCCCC-------------CchHHHHHHHCCCCEEEec
Q 020508 129 YKVAVLASKQE-H-CLVDFLYGWQEGKLPVEITCVISNHDRGP-------------NSHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 129 ~ri~v~~Sg~g-~-~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~-------------~~~~~~~a~~~gIp~~~~~ 188 (325)
+||+|..||.- | .+..++.. . +.++.++..+..... ...+.++|+++|||++.++
T Consensus 1 ~kVlValSGGvDSsvla~lL~~--~---G~~V~~v~~~~~~~~~~~~~~~~~s~~d~~~a~~~a~~LgIp~~vvd 70 (346)
T PRK00143 1 KRVVVGMSGGVDSSVAAALLKE--Q---GYEVIGVFMKLWDDDDETGKGGCCAEEDIADARRVADKLGIPHYVVD 70 (346)
T ss_pred CeEEEEecCCHHHHHHHHHHHH--c---CCcEEEEEEeCCCcccccccCCcCcHHHHHHHHHHHHHcCCcEEEEe
Confidence 48999999863 4 33444432 2 456777765542100 1247889999999998776
No 296
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.86 E-value=1.8e+02 Score=27.61 Aligned_cols=76 Identities=9% Similarity=0.119 Sum_probs=47.2
Q ss_pred HHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCCEEEEe-ccccccCh
Q 020508 141 CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLA-RYMQILSG 219 (325)
Q Consensus 141 ~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dliv~~-g~~~il~~ 219 (325)
...+||+...- .+...-+.|+-.. ..-+.|+..+..+.|--+....+ ..+++.+.++++|++|++ |...++++
T Consensus 143 avi~lL~~~~i-~l~Gk~vvVvGrs-~~VG~Pla~lL~~~gAtVtv~hs----~t~~l~~~~~~ADIvV~AvG~p~~i~~ 216 (285)
T PRK14191 143 GVMRLLKHYHI-EIKGKDVVIIGAS-NIVGKPLAMLMLNAGASVSVCHI----LTKDLSFYTQNADIVCVGVGKPDLIKA 216 (285)
T ss_pred HHHHHHHHhCC-CCCCCEEEEECCC-chhHHHHHHHHHHCCCEEEEEeC----CcHHHHHHHHhCCEEEEecCCCCcCCH
Confidence 34556665432 2223334555433 22367888888888877765542 223455666789998887 78888888
Q ss_pred hHH
Q 020508 220 KFL 222 (325)
Q Consensus 220 ~~l 222 (325)
+.+
T Consensus 217 ~~v 219 (285)
T PRK14191 217 SMV 219 (285)
T ss_pred HHc
Confidence 877
No 297
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=45.35 E-value=83 Score=26.83 Aligned_cols=57 Identities=25% Similarity=0.349 Sum_probs=35.9
Q ss_pred eEEEEEeCCc--hHHHHHHHHhhcCCCCceEEEEEeCCCCCC-----CchHHHHHHHCCCCEEEe
Q 020508 130 KVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-----NSHVIRFLERHGIPYHYL 187 (325)
Q Consensus 130 ri~v~~Sg~g--~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~-----~~~~~~~a~~~gIp~~~~ 187 (325)
||+|..||.. +.+-.++...... .+.++.+|..++.-.. ...+.++|+.+|||++.+
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~-~~~~v~~v~id~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 64 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPR-LGLRLVAVHVDHGLRPESDEEAAFVADLCAKLGIPLYIL 64 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHH-cCCcEEEEEecCCCCchHHHHHHHHHHHHHHcCCcEEEE
Confidence 6888889863 4444455443221 1346777766653211 134788999999999876
No 298
>PRK03868 glucose-6-phosphate isomerase; Provisional
Probab=45.28 E-value=85 Score=31.38 Aligned_cols=58 Identities=10% Similarity=0.104 Sum_probs=35.4
Q ss_pred CceEEEEEeCCchHHHHHH------HHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecC
Q 020508 128 KYKVAVLASKQEHCLVDFL------YGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 189 (325)
Q Consensus 128 ~~ri~v~~Sg~g~~l~~Ll------~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~ 189 (325)
+.-+++.+|++|++.+.+. +..+..........++|++ +.++.++|+++|++++.++.
T Consensus 111 ~~TlviviSKSGtT~ETl~~~~~~~~~~~~~~~~~~~~v~vTd~----~s~L~~~a~~~g~~~f~ip~ 174 (410)
T PRK03868 111 ENTLFIVISKSGTTIETISIFKYLLSHFKLDQELKKNFLFITDP----DSKLEQFAKENNIKCFNIPK 174 (410)
T ss_pred CcEEEEEEeCCCCCHHHHHHHHHHHHHhccccccccEEEEEecC----CchHHHhHHhcCCcEEecCC
Confidence 3456777899986544433 2221110013344567765 34699999999999988773
No 299
>COG0245 IspF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Lipid metabolism]
Probab=45.09 E-value=54 Score=28.41 Aligned_cols=79 Identities=9% Similarity=0.035 Sum_probs=57.3
Q ss_pred EEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcccceeeeecCC
Q 020508 46 VFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDI 125 (325)
Q Consensus 46 tv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~ 125 (325)
..-|.|+.-++.++.+.+.++|..|.++..+ ++.+-|+.. ....+..+.+|+.|+.+.+.+.+...
T Consensus 67 ~~kgadS~~lL~~~~~~v~~~g~~i~Nvd~t-----------ii~~~PK~~---P~~~amr~~ia~~L~i~~~~invKat 132 (159)
T COG0245 67 RWKGADSRILLKEAVELVREKGYRIGNVDIT-----------IIAQRPKLG---PYREAMRANIAELLGIPVDRINVKAT 132 (159)
T ss_pred ccCCCchHHHHHHHHHHHHHhCcEEEeEEEE-----------EEEecCccc---chHHHHHHHHHHHhCCCchheEEEEe
Confidence 3458899999999999999999999988874 444666632 33444455677788888877766664
Q ss_pred CCCceEEEEEeCCc
Q 020508 126 DPKYKVAVLASKQE 139 (325)
Q Consensus 126 ~~~~ri~v~~Sg~g 139 (325)
. .-|+++.+.++|
T Consensus 133 T-~E~LGf~Gr~eG 145 (159)
T COG0245 133 T-TEKLGFTGRGEG 145 (159)
T ss_pred c-cCccccccccCc
Confidence 3 357888776665
No 300
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=45.06 E-value=1e+02 Score=26.15 Aligned_cols=59 Identities=19% Similarity=0.175 Sum_probs=35.7
Q ss_pred eEEEEEeCCc--hHHHHHHHHhhcC-CCCceEEEEEeCCCCCC-----CchHHHHHHHCCCCEEEec
Q 020508 130 KVAVLASKQE--HCLVDFLYGWQEG-KLPVEITCVISNHDRGP-----NSHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 130 ri~v~~Sg~g--~~l~~Ll~~~~~~-~l~~~I~~Vvt~~~~~~-----~~~~~~~a~~~gIp~~~~~ 188 (325)
||+|..||.. +.+..++...... ..+.++.++..++.... ...+.++|+++|+|+..++
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 67 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEGIPGYRDESLEVVERLAEELGIELEIVS 67 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEECCCCCCcHHHHHHHHHHHHHcCCceEEEe
Confidence 6888889863 3444444443211 11357777766653211 1347889999999998775
No 301
>PHA00771 head assembly protein
Probab=44.98 E-value=32 Score=28.83 Aligned_cols=49 Identities=16% Similarity=0.240 Sum_probs=39.4
Q ss_pred EEEEcCCCCCCCCCCcH----HHHHHHhCCcEeEEEEEEecCCCCCCCeEEEE
Q 020508 229 VINIHHGLLPSFKGGKP----AKQAFDAGVKLIGATSHFVTEELDAGPIIEQM 277 (325)
Q Consensus 229 ~iNiHpslLP~yRG~~p----i~~ai~~G~~~~GvTvh~v~~~~D~G~Ii~Q~ 277 (325)
.+-.|+=.+|.+||.+. .+|-++-.....-+++-++.+..--|.++.|.
T Consensus 62 ~~ecHa~y~P~fRG~ya~~~r~F~kwlL~Nt~f~~vit~vp~kt~~G~vic~l 114 (151)
T PHA00771 62 TFDCHAMYLPEIRGFSKEIGLAFWRYILTNTTVQCVTSFAARKFRHGQMYCAM 114 (151)
T ss_pred EEEEEeeeCccccchhHHHHHHHHHHHhcCCceeEEEEecccccccchhhhhh
Confidence 88899999999999765 46665555567778888888899999988774
No 302
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=44.65 E-value=1e+02 Score=26.35 Aligned_cols=96 Identities=17% Similarity=0.238 Sum_probs=49.2
Q ss_pred cCCCCCceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEec-CC----------
Q 020508 123 PDIDPKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AK---------- 190 (325)
Q Consensus 123 ~~~~~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~-~~---------- 190 (325)
+..-++.||+|++.|. |.....++.. ++++++.. +. .....+..+..+--...++ ..
T Consensus 15 ~~~~~p~~vvv~G~G~vg~gA~~~~~~-----lGa~v~~~--d~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 83 (168)
T PF01262_consen 15 PGGVPPAKVVVTGAGRVGQGAAEIAKG-----LGAEVVVP--DE----RPERLRQLESLGAYFIEVDYEDHLERKDFDKA 83 (168)
T ss_dssp TTEE-T-EEEEESTSHHHHHHHHHHHH-----TT-EEEEE--ES----SHHHHHHHHHTTTEESEETTTTTTTSB-CCHH
T ss_pred CCCCCCeEEEEECCCHHHHHHHHHHhH-----CCCEEEec--cC----CHHHHHhhhcccCceEEEcccccccccccchh
Confidence 3344578999988876 5555556654 35664332 22 1123444455554433332 00
Q ss_pred -----CChhHHHHHHHhcCCCEEEEec------cccccChhHHhhcCCCE
Q 020508 191 -----ENEREEELLELVQNTDFLVLAR------YMQILSGKFLRSYGKDV 229 (325)
Q Consensus 191 -----~~~~~~~~~~~l~~~Dliv~~g------~~~il~~~~l~~~~~~~ 229 (325)
....+..+.+.+...|+++..+ +.++++.+.++..+.+.
T Consensus 84 ~~~~~~~~~~~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gs 133 (168)
T PF01262_consen 84 DYYEHPESYESNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGS 133 (168)
T ss_dssp HCHHHCCHHHHHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTE
T ss_pred hhhHHHHHhHHHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCc
Confidence 0122345666666789988643 35788888888877443
No 303
>PRK04148 hypothetical protein; Provisional
Probab=44.55 E-value=1.9e+02 Score=24.29 Aligned_cols=50 Identities=10% Similarity=0.001 Sum_probs=35.0
Q ss_pred CceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEec
Q 020508 128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 128 ~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~ 188 (325)
.+|++.++.|.|..+...|.. .+++|+++=.++ ...+.|++.++.+..-+
T Consensus 17 ~~kileIG~GfG~~vA~~L~~-----~G~~ViaIDi~~------~aV~~a~~~~~~~v~dD 66 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKE-----SGFDVIVIDINE------KAVEKAKKLGLNAFVDD 66 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHH-----CCCEEEEEECCH------HHHHHHHHhCCeEEECc
Confidence 479999999998766655542 257877764443 24778888999887544
No 304
>PLN00062 TATA-box-binding protein; Provisional
Probab=44.39 E-value=63 Score=28.53 Aligned_cols=124 Identities=11% Similarity=0.096 Sum_probs=69.1
Q ss_pred chhhhccccceeeeeecccccCCccccccCCCCCCCCcceEEEEEEcCCCcc----hHHHHHHHHHhcCCeEeEeeeecc
Q 020508 3 LLRRLSSSLQQVVKFTNRSFKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVG----IVAKLSECIASRGGNILAADVFVP 78 (325)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ltv~g~DrpG----IVa~Vt~~La~~giNI~~l~~~~~ 78 (325)
+|+.|+..+.. ......+++++-+++.+-. ...---.+-.+.++|.-..- -+.++.+.|.+.|..+.. ..+
T Consensus 18 dL~~la~~~~n-~eYePe~fpgli~Rl~~Pk-~t~lIF~SGKiviTGaks~e~a~~a~~~~~~~L~~lg~~~~~-~~f-- 92 (179)
T PLN00062 18 DLKKIALQARN-AEYNPKRFAAVIMRIREPK-TTALIFASGKMVCTGAKSEHDSKLAARKYARIIQKLGFPAKF-KDF-- 92 (179)
T ss_pred cHHHHHhhCCC-CEECCccCcEEEEEeCCCc-EEEEEECCCeEEEEecCCHHHHHHHHHHHHHHHHHcCCCcCC-Ccc--
Confidence 35666666554 4556667788877765321 11111222356677863332 356788889888874432 111
Q ss_pred CCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcc---cceeeeecCCCCCceEEEEEeCC
Q 020508 79 EKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA---MRSVVRVPDIDPKYKVAVLASKQ 138 (325)
Q Consensus 79 ~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~---~~~~~~~~~~~~~~ri~v~~Sg~ 138 (325)
-.=.+...+++|- +.+++.+...-.+-+ +++. --.++|+.. ++..+.+|.||.
T Consensus 93 ---~v~NIvas~~l~~-~i~L~~la~~~~~~~-~YePE~fPgliyr~~~--pk~~~liF~sGk 148 (179)
T PLN00062 93 ---KIQNIVGSCDVKF-PIRLEGLAYAHGAFS-SYEPELFPGLIYRMKQ--PKIVLLIFVSGK 148 (179)
T ss_pred ---EEEEEEEEEECCC-cccHHHHHHhchhhc-ccCcccCceEEEEeCC--CcEEEEEeCCCE
Confidence 1223567777887 788888875322222 1221 122455554 678888998886
No 305
>COG4693 PchG Oxidoreductase (NAD-binding), involved in siderophore biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=43.74 E-value=39 Score=32.28 Aligned_cols=54 Identities=11% Similarity=0.194 Sum_probs=35.4
Q ss_pred CceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEec
Q 020508 128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 128 ~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~ 188 (325)
++||+|+++..|.-..+ +....-...+.++++..-. ..-.++|+++|||.+.-+
T Consensus 4 pksVvV~GtrFGq~Yla---af~~~~~~~eLaGiLaqGS----eRSRaLAh~~GVply~~~ 57 (361)
T COG4693 4 PKSVVVCGTRFGQFYLA---AFAAAPPRFELAGILAQGS----ERSRALAHRLGVPLYCEV 57 (361)
T ss_pred CceEEEecchHHHHHHH---HhccCCCCceeehhhhccc----HHHHHHHHHhCCccccCH
Confidence 45999999888754322 2222222478888887643 234789999999997543
No 306
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=43.47 E-value=1.8e+02 Score=29.37 Aligned_cols=196 Identities=16% Similarity=0.066 Sum_probs=103.3
Q ss_pred ceEEEEEEcCC-CcchHHHHHHHHHhcCCeEeEeeee-c--c---CCC-CeEEEEE-------------------EEEeC
Q 020508 41 THGIHVFHCPD-EVGIVAKLSECIASRGGNILAADVF-V--P---EKK-NVFYSRS-------------------EFIFD 93 (325)
Q Consensus 41 ~~~~ltv~g~D-rpGIVa~Vt~~La~~giNI~~l~~~-~--~---~~~-g~F~~~~-------------------~v~~p 93 (325)
.+..+.+.|.- -+|=+.++.+.|.+.|+++...-+- . + .+. ..+.+.+ .+.+|
T Consensus 198 ~~~~VNiiG~~~~~gd~~el~~lL~~~Gl~v~~~~~g~~s~~ei~~~~~A~lniv~~~~~~~~~A~~Le~~~GiP~~~~~ 277 (457)
T TIGR01284 198 TEYDVNLIGEYNIQGDLWVLKKYFERMGIQVLSTFTGNGCYDELRWMHRAKLNVVRCARSANYIANELEERYGIPRLDID 277 (457)
T ss_pred CCCeEEEEccCCchhhHHHHHHHHHHcCCeEEEEECCCCCHHHHHhccccCEEEEEChHHHHHHHHHHHHHhCCCeEecc
Confidence 35667777743 3588899999999999999732221 1 0 011 1121111 01122
Q ss_pred CCCCChHHHHHHHHhhhhhhcccceee--------e-------ecCCCCCceEEEEEeCC-chHHHHHHHHhhcCCCCce
Q 020508 94 PIKWPREQMDEDFFKLSKMFNAMRSVV--------R-------VPDIDPKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVE 157 (325)
Q Consensus 94 ~~~~~~~~L~~~l~~l~~~l~~~~~~~--------~-------~~~~~~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~ 157 (325)
....+.-.+-|.++++-+|++...- + ....-..+|+++++.+. ...+...+. .+++.+
T Consensus 278 --~~G~~~T~~~l~~ia~~~g~~~~~e~~i~~~~~~~~~~ld~~~~~L~GkrvaI~~~~~~~~~l~~~l~----~ElGme 351 (457)
T TIGR01284 278 --FFGFEYCAKNLRKIGEFFGIEERAERVIEEEMAKWKPELDWYKERLRGKKVWVWSGGPKLWHWPRPLE----DELGME 351 (457)
T ss_pred --cCCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHH----HhCCCE
Confidence 2455666777777777777653110 0 01111346888865332 122222221 346789
Q ss_pred EEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhc--CCCEEEEeccccccChhHHhhcCCCEEEEcCC
Q 020508 158 ITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVLARYMQILSGKFLRSYGKDVINIHHG 235 (325)
Q Consensus 158 I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~--~~Dliv~~g~~~il~~~~l~~~~~~~iNiHps 235 (325)
++++.+.... .....+..+..+--...++ +.+..++.+.++ +||+++.-++.+.+-. +....++++|+.
T Consensus 352 vv~~~~~~~~--~~~~~~~~~~~~~~~~~i~---d~~~~e~~~~i~~~~pDllig~~~~~~~a~----k~gip~~~~~~~ 422 (457)
T TIGR01284 352 VVAVSTKFGH--EDDYEKIIARVREGTVIID---DPNELELEEIIEKYKPDIILTGIREGELAK----KLGVPYINIHSY 422 (457)
T ss_pred EEEEEEEeCC--HHHHHHHHHhcCCCeEEEe---CCCHHHHHHHHHhcCCCEEEecCCcchhhh----hcCCCEEEcccc
Confidence 9888764321 1233444444321112223 123346666665 8999998887765544 345568888765
Q ss_pred C-CC--CCCCCcHHHHHHH
Q 020508 236 L-LP--SFKGGKPAKQAFD 251 (325)
Q Consensus 236 l-LP--~yRG~~pi~~ai~ 251 (325)
. -| -|+|.--+..-+.
T Consensus 423 ~~~~~~Gy~G~~~l~~~i~ 441 (457)
T TIGR01284 423 HNGPYIGFEGFVNLARDMY 441 (457)
T ss_pred ccCCccchhhHHHHHHHHH
Confidence 4 34 4677655444343
No 307
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=42.87 E-value=1.3e+02 Score=30.22 Aligned_cols=214 Identities=11% Similarity=0.124 Sum_probs=100.6
Q ss_pred hHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCC-hHHHHHHHHh-hhhhhcccceeeeecCCCCCceEE
Q 020508 55 IVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWP-REQMDEDFFK-LSKMFNAMRSVVRVPDIDPKYKVA 132 (325)
Q Consensus 55 IVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~-~~~L~~~l~~-l~~~l~~~~~~~~~~~~~~~~ri~ 132 (325)
.+.++-..|-+.++|..-....+....... ..-.++. ..+ ...+...+.+ +.+-++-....|... ..++.-|+
T Consensus 30 ~l~ei~~aLleaDV~~~vv~~~~~~v~~~~---~~~~~~~-~~~~~~~v~~~v~~~L~~~l~~~~~~~~~~-~~~~~vi~ 104 (429)
T TIGR01425 30 MLKEICTALLESDVNIKLVRQLRENIKKAI---NLEEMAS-GLNKRKMIQHAVFKELCNLVDPGVEAFTPK-KGKQNVIM 104 (429)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHH---hcccccc-ccCHHHHHHHHHHHHHHHHhCCCCcccccc-CCCCeEEE
Confidence 566777778788877755444432111100 0012233 222 2334444333 333344332223321 22233344
Q ss_pred EEE-eCCc--hHHHHHHHHhhcCCCCceEEEEEeCCCCCCC-chHHHHHHHCCCCEEEecCCCChhH--HHHHHHhc--C
Q 020508 133 VLA-SKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPN-SHVIRFLERHGIPYHYLCAKENERE--EELLELVQ--N 204 (325)
Q Consensus 133 v~~-Sg~g--~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~-~~~~~~a~~~gIp~~~~~~~~~~~~--~~~~~~l~--~ 204 (325)
+.+ .|.| +....|...++.. +..|..|-++.-++.. ..+..+|+..++|++......+... .+-++.++ +
T Consensus 105 lvG~~GvGKTTtaaKLA~~l~~~--G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~~~ 182 (429)
T TIGR01425 105 FVGLQGSGKTTTCTKLAYYYQRK--GFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKKEN 182 (429)
T ss_pred EECCCCCCHHHHHHHHHHHHHHC--CCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHhCC
Confidence 443 3444 3444454444332 3566555555433211 2245679999999975431111100 11233333 6
Q ss_pred CCEEEEeccccccC-hhHHhhcCC--CEEEEcCC--CCCCCCCCcHHHHH--HHhCCcEeEEEEEEecCCCCCCCeEE
Q 020508 205 TDFLVLARYMQILS-GKFLRSYGK--DVINIHHG--LLPSFKGGKPAKQA--FDAGVKLIGATSHFVTEELDAGPIIE 275 (325)
Q Consensus 205 ~Dliv~~g~~~il~-~~~l~~~~~--~~iNiHps--lLP~yRG~~pi~~a--i~~G~~~~GvTvh~v~~~~D~G~Ii~ 275 (325)
.|++++=.-++.=. ..+++.... ..++-|-- -+..-.|......| +.+....+|+=+=++|+.--.|.++.
T Consensus 183 ~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~~~~~g~IlTKlD~~argG~aLs 260 (429)
T TIGR01425 183 FDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSVDVGSVIITKLDGHAKGGGALS 260 (429)
T ss_pred CCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhccCCcEEEEECccCCCCccHHhh
Confidence 89999876554432 223332110 11111111 12334565555443 44556688999999998877777776
No 308
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=42.58 E-value=36 Score=31.30 Aligned_cols=149 Identities=14% Similarity=0.181 Sum_probs=78.1
Q ss_pred EEEeCCchHHHHHHHHhh---cCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCCh-----hHHHHHHHhcC
Q 020508 133 VLASKQEHCLVDFLYGWQ---EGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENE-----REEELLELVQN 204 (325)
Q Consensus 133 v~~Sg~g~~l~~Ll~~~~---~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~-----~~~~~~~~l~~ 204 (325)
+++-|.||....+++++. .++ ..+.+|-|... -..+|+++|||+...+..... -.+|+ +
T Consensus 23 viGlGTGST~~~fI~~Lg~~~~~e--~~i~~V~TS~~------t~~l~~~~GI~v~~l~~~~~lDl~iDGADEv-----d 89 (227)
T COG0120 23 VIGLGTGSTAAYFIEALGRRVKGE--LDIGGVPTSFQ------TEELARELGIPVSSLNEVDSLDLAIDGADEV-----D 89 (227)
T ss_pred EEEEcCcHHHHHHHHHHHHhhccC--ccEEEEeCCHH------HHHHHHHcCCeecCccccCccceEeeccccc-----C
Confidence 356688888888777764 222 35777776553 378999999999865521000 00011 2
Q ss_pred CCEEE-EeccccccChhHHhhcCCCE-EEEcCCCCCCCCCCcH-------HHHH-HHhCCcEeEEEEEEe----cCC---
Q 020508 205 TDFLV-LARYMQILSGKFLRSYGKDV-INIHHGLLPSFKGGKP-------AKQA-FDAGVKLIGATSHFV----TEE--- 267 (325)
Q Consensus 205 ~Dliv-~~g~~~il~~~~l~~~~~~~-iNiHpslLP~yRG~~p-------i~~a-i~~G~~~~GvTvh~v----~~~--- 267 (325)
+++-+ =-|=+-++.+++++....++ +-.-.|-|...=|..| ..|. +.+.....|....+- ..+
T Consensus 90 ~~~~lIKGGGgAl~rEKIva~~ak~~IvIvDesKlV~~LG~fplPVEVip~a~~~v~r~l~~~g~~~~lR~~~~k~Gpvi 169 (227)
T COG0120 90 PNLNLIKGGGGALLREKIVASAAKRFIVIVDESKLVEVLGKFPLPVEVIPFARSAVLRKLEKLGGKPTLREGEGKDGPVI 169 (227)
T ss_pred CCCCEEccChHHHHHHHHHHHhcCeEEEEEeCccchhhcCCCCcCEEEchhHHHHHHHHHHHhCCCccccccccCCCCEE
Confidence 23322 22334456666666554443 3344555544444322 1221 122233344444332 233
Q ss_pred CCCCCeEEEEEEeCCCCCCHHHHHHHHHH
Q 020508 268 LDAGPIIEQMVERVSHRDNLRTFVQKSED 296 (325)
Q Consensus 268 ~D~G~Ii~Q~~~~I~~~dt~~~l~~r~~~ 296 (325)
-|.|..|.-..++ .-+++.+|..++..
T Consensus 170 TDnGN~IlDv~~~--~i~dp~~le~~l~~ 196 (227)
T COG0120 170 TDNGNYILDVHFG--RIEDPEELEKELNA 196 (227)
T ss_pred eeCCCEEEEecCC--CcCCHHHHHHHHhC
Confidence 5888888777665 34567777766653
No 309
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=42.55 E-value=97 Score=23.94 Aligned_cols=42 Identities=14% Similarity=0.226 Sum_probs=27.6
Q ss_pred CchHHHHHHHCCCCEEEe--cCCCChhHHHHHHHhcCCCEEEEe
Q 020508 170 NSHVIRFLERHGIPYHYL--CAKENEREEELLELVQNTDFLVLA 211 (325)
Q Consensus 170 ~~~~~~~a~~~gIp~~~~--~~~~~~~~~~~~~~l~~~Dliv~~ 211 (325)
.....+.++++|.....+ +.........+.+.+.++|+||+.
T Consensus 12 ~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~ 55 (97)
T PF10087_consen 12 ERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVF 55 (97)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEE
Confidence 356788889999888777 211122223466777789998875
No 310
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=42.53 E-value=59 Score=24.12 Aligned_cols=58 Identities=12% Similarity=0.260 Sum_probs=33.8
Q ss_pred CceEEEEEeCCc---hHHHHHHHHhhcCCCCceEEEEEeCCC-CCCCchHHHHHHHCCCCEEEec
Q 020508 128 KYKVAVLASKQE---HCLVDFLYGWQEGKLPVEITCVISNHD-RGPNSHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 128 ~~ri~v~~Sg~g---~~l~~Ll~~~~~~~l~~~I~~Vvt~~~-~~~~~~~~~~a~~~gIp~~~~~ 188 (325)
.+||+|.++-.- .-+.+-|+...... + .++ +|+--. +..+.-..++|++.|+|+..++
T Consensus 3 g~rVli~GgR~~~D~~~i~~~Ld~~~~~~-~-~~~-lvhGga~~GaD~iA~~wA~~~gv~~~~~~ 64 (71)
T PF10686_consen 3 GMRVLITGGRDWTDHELIWAALDKVHARH-P-DMV-LVHGGAPKGADRIAARWARERGVPVIRFP 64 (71)
T ss_pred CCEEEEEECCccccHHHHHHHHHHHHHhC-C-CEE-EEECCCCCCHHHHHHHHHHHCCCeeEEeC
Confidence 468888776543 33444455544322 1 233 444332 2223447889999999998876
No 311
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=42.48 E-value=1.8e+02 Score=24.27 Aligned_cols=110 Identities=19% Similarity=0.212 Sum_probs=57.6
Q ss_pred EEEEEeC-C-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhc--CCC
Q 020508 131 VAVLASK-Q-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--NTD 206 (325)
Q Consensus 131 i~v~~Sg-~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~--~~D 206 (325)
|++|+|- + |+.--+++.+..+ .++|+++.++++ -..+.+.|++++.++..+... ...+++.+.+. .++
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d---~f~v~~Lsa~~n---~~~L~~q~~~f~p~~v~i~~~--~~~~~l~~~~~~~~~~ 72 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPD---KFEVVALSAGSN---IEKLAEQAREFKPKYVVIADE--EAYEELKKALPSKGPG 72 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTT---TEEEEEEEESST---HHHHHHHHHHHT-SEEEESSH--HHHHHHHHHHHHTTSS
T ss_pred CEEEcCCcHHHHHHHHHHHhCCC---ceEEEEEEcCCC---HHHHHHHHHHhCCCEEEEcCH--HHHHHHHHHhhhcCCC
Confidence 4667653 2 5555556655432 488888888653 345788888888888766411 01122333331 345
Q ss_pred EEEEeccccccChhHHhhcCC-CEEEEcCCCCCCCCCCcHHHHHHHhCC
Q 020508 207 FLVLARYMQILSGKFLRSYGK-DVINIHHGLLPSFKGGKPAKQAFDAGV 254 (325)
Q Consensus 207 liv~~g~~~il~~~~l~~~~~-~~iNiHpslLP~yRG~~pi~~ai~~G~ 254 (325)
.-+..|.--+. ++++..+. -++|-=. -+.|..|...|+.+|.
T Consensus 73 ~~v~~G~~~l~--~~~~~~~~D~vv~Ai~----G~aGL~pt~~Ai~~gk 115 (129)
T PF02670_consen 73 IEVLSGPEGLE--ELAEEPEVDIVVNAIV----GFAGLKPTLAAIKAGK 115 (129)
T ss_dssp SEEEESHHHHH--HHHTHTT-SEEEE--S----SGGGHHHHHHHHHTTS
T ss_pred CEEEeChHHHH--HHhcCCCCCEEEEeCc----ccchHHHHHHHHHCCC
Confidence 55555542221 22222221 2333322 3477888888888874
No 312
>PF14085 DUF4265: Domain of unknown function (DUF4265)
Probab=42.47 E-value=1.4e+02 Score=24.17 Aligned_cols=59 Identities=7% Similarity=-0.027 Sum_probs=42.6
Q ss_pred eEEEEEEcCCCc-chHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhh
Q 020508 42 HGIHVFHCPDEV-GIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (325)
Q Consensus 42 ~~~ltv~g~Drp-GIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~ 111 (325)
+.++.|.-.+.. ....+|...|.++||.++-.+. -.+.+++|. ..+.+.+++-|+...+
T Consensus 52 nsTiRv~~~~~~~~~~~~v~~~l~~lG~~~E~~~~----------~~lav~VP~-~~~~~~i~~~L~~~~e 111 (117)
T PF14085_consen 52 NSTIRVIFDDPGPDDIEAVREELEALGCTVEGFSE----------RMLAVDVPP-SVDFDAIKDYLDRGEE 111 (117)
T ss_pred CEEEEEEEcCCcchhHHHHHHHHHHcCCeEEccCC----------CEEEEEECC-CCCHHHHHHHHHhhhh
Confidence 334444443333 3799999999999999984433 246788999 7899999999988544
No 313
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=42.41 E-value=1.6e+02 Score=28.20 Aligned_cols=155 Identities=13% Similarity=0.150 Sum_probs=88.4
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCC
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 206 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 206 (325)
-++|+|++-|. |..+...+..+ +.+|.+ +....+ ..+ +.-.+ .+ ..++.+.+.++|
T Consensus 136 g~tvgIvG~G~IG~~vA~~l~af-----G~~V~~-~~~~~~--~~~--------~~~~~-~~------~~~l~e~l~~aD 192 (312)
T PRK15469 136 DFTIGILGAGVLGSKVAQSLQTW-----GFPLRC-WSRSRK--SWP--------GVQSF-AG------REELSAFLSQTR 192 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-----CCEEEE-EeCCCC--CCC--------Cceee-cc------cccHHHHHhcCC
Confidence 46899988886 66766666542 456553 322211 100 11111 01 124556666889
Q ss_pred EEEEec-----cccccChhHHhhcCCCEEEEcCCCCCCCCCC----cHHHHHHHhCCc-EeEEEEEEecCCCCCCCeEEE
Q 020508 207 FLVLAR-----YMQILSGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQAFDAGVK-LIGATSHFVTEELDAGPIIEQ 276 (325)
Q Consensus 207 liv~~g-----~~~il~~~~l~~~~~~~iNiHpslLP~yRG~----~pi~~ai~~G~~-~~GvTvh~v~~~~D~G~Ii~Q 276 (325)
++++.- -..++..++++..+.+.+=+--| ||. ..+..|+.+|.- -.|.-++.-++--+.-|++..
T Consensus 193 vvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~a-----RG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~ 267 (312)
T PRK15469 193 VLINLLPNTPETVGIINQQLLEQLPDGAYLLNLA-----RGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQH 267 (312)
T ss_pred EEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECC-----CccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcC
Confidence 988853 24567778888887664333333 774 457788888842 244555665554445566666
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCce
Q 020508 277 MVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRV 314 (325)
Q Consensus 277 ~~~~I~~~dt~~~l~~r~~~~~~~ll~~al~~i~~g~~ 314 (325)
..+-+.|.-...+-..+ ..+.+.+.++.+.+|+-
T Consensus 268 ~nvi~TPHiag~t~~~~----~~~~~~~n~~~~~~g~~ 301 (312)
T PRK15469 268 PRVAITPHVAAVTRPAE----AVEYISRTIAQLEKGER 301 (312)
T ss_pred CCeEECCcCCCCcCHHH----HHHHHHHHHHHHHcCCC
Confidence 66666665433332222 35667788888888763
No 314
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=42.19 E-value=94 Score=31.47 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=30.8
Q ss_pred ceEEEEEEcC---CCcchHHHHHHHHHhcCCeEeEeee
Q 020508 41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADV 75 (325)
Q Consensus 41 ~~~~ltv~g~---DrpGIVa~Vt~~La~~giNI~~l~~ 75 (325)
.-..++++|. ..||+.+++.+.|++.++||.-+++
T Consensus 382 ~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~iss 419 (447)
T COG0527 382 GLALVSIVGAGMRSNPGVAARIFQALAEENINIIMISS 419 (447)
T ss_pred CeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEEc
Confidence 4558889997 6799999999999999999998885
No 315
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=42.18 E-value=4e+02 Score=27.48 Aligned_cols=152 Identities=16% Similarity=0.220 Sum_probs=78.3
Q ss_pred HHHHHHHHhcCCeEeEeeeecc--CCC--CeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcccceeeeecCCCCCceEE
Q 020508 57 AKLSECIASRGGNILAADVFVP--EKK--NVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVA 132 (325)
Q Consensus 57 a~Vt~~La~~giNI~~l~~~~~--~~~--g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~~~~~ri~ 132 (325)
.++.+.|.++|++.+.++.--+ +.+ ..|..+..+ .....+.++.+.+..-++... ......++.||+
T Consensus 99 ~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~I------AGy~Av~~aa~~~~~~~~g~~---taaG~~pg~kVl 169 (509)
T PRK09424 99 PELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANI------AGYRAVIEAAHEFGRFFTGQI---TAAGKVPPAKVL 169 (509)
T ss_pred HHHHHHHHHcCCEEEEeecccccccCCCcccccchhhh------hHHHHHHHHHHHhcccCCCce---eccCCcCCCEEE
Confidence 7789999999999999888532 111 123222222 113344444444444333221 111223468999
Q ss_pred EEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCC-C----------hhH--HHH
Q 020508 133 VLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE-N----------ERE--EEL 198 (325)
Q Consensus 133 v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~-~----------~~~--~~~ 198 (325)
|++.|. |........+ ++++|.+ + +. ...-++.++++|..+..++... . ..+ +..
T Consensus 170 ViGaG~iGL~Ai~~Ak~-----lGA~V~a-~-D~----~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~ 238 (509)
T PRK09424 170 VIGAGVAGLAAIGAAGS-----LGAIVRA-F-DT----RPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAE 238 (509)
T ss_pred EECCcHHHHHHHHHHHH-----CCCEEEE-E-eC----CHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHH
Confidence 998885 3332222222 2465433 2 22 1245889999999865554111 0 001 111
Q ss_pred HHH----hcCCCEEEEecc------ccccChhHHhhcCCC
Q 020508 199 LEL----VQNTDFLVLARY------MQILSGKFLRSYGKD 228 (325)
Q Consensus 199 ~~~----l~~~Dliv~~g~------~~il~~~~l~~~~~~ 228 (325)
.+. ++++|+++.+.. ...+.++.++..+.+
T Consensus 239 ~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpG 278 (509)
T PRK09424 239 MALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPG 278 (509)
T ss_pred HHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCC
Confidence 122 236899988864 224456666666543
No 316
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=42.12 E-value=1e+02 Score=25.24 Aligned_cols=33 Identities=18% Similarity=0.384 Sum_probs=23.6
Q ss_pred ceEEEEEeCCCCCCCchHHHHHHHCCCCEEEec
Q 020508 156 VEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 156 ~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~ 188 (325)
..|..+.|-..+.....+.++|+++|+|+..++
T Consensus 33 ~~i~~iasi~~K~~E~~l~~~A~~l~~~~~~~~ 65 (121)
T PF01890_consen 33 RSIAAIASIDIKADEPGLLELAEELGIPLRFFS 65 (121)
T ss_dssp GGEEEEEESSSSS--HHHHHHHHHCTSEEEEE-
T ss_pred hhccEEEeccccCCCHHHHHHHHHhCCCeEEEC
Confidence 567777765544335679999999999999876
No 317
>PRK05948 precorrin-2 methyltransferase; Provisional
Probab=42.12 E-value=1.7e+02 Score=26.91 Aligned_cols=110 Identities=15% Similarity=0.103 Sum_probs=59.9
Q ss_pred EEEEeCCCCCChHHHHHHHHhhhhhhcccceeeeecCCCCCceEEEEEeCCc---hHHHHHHHHhhc--CCCCceEEEEE
Q 020508 88 SEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQE---HCLVDFLYGWQE--GKLPVEITCVI 162 (325)
Q Consensus 88 ~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~~~~~ri~v~~Sg~g---~~l~~Ll~~~~~--~~l~~~I~~Vv 162 (325)
+.+.+|. ..+.+.+.++.++.++.+ .+. . ..-.+|+++.+|.. +.+..+++.+++ .....+|+-=|
T Consensus 61 ~~l~fpm-~~~~~~~~~~~~~~~~~i-~~~--~-----~~g~~v~~l~~GDp~~ys~~~~l~~~l~~~~~~~~veivPGI 131 (238)
T PRK05948 61 LPLYFPY-VQDEEQLEQAWQAAADQV-WHY--L-----EQGEDVAFACEGDVSFYSTFTYLAQTLQELYPQVAIQTIPGV 131 (238)
T ss_pred EEecCCc-cCChHHHHHHHHHHHHHH-HHH--H-----HcCCeEEEEeCCChHHHHHHHHHHHHHHhcCCCCCEEEECCh
Confidence 3445666 455666776666665544 110 0 12358999999974 455556665544 22333433222
Q ss_pred eCCCCCCCchHHHHHHHCCCCEEEecCCC-----ChhHHHHHHHhcCCCEEEEeccc
Q 020508 163 SNHDRGPNSHVIRFLERHGIPYHYLCAKE-----NEREEELLELVQNTDFLVLARYM 214 (325)
Q Consensus 163 t~~~~~~~~~~~~~a~~~gIp~~~~~~~~-----~~~~~~~~~~l~~~Dliv~~g~~ 214 (325)
+.+...|...|+|...-.... ....+++.+.+...|.+|+..-.
T Consensus 132 --------ss~~a~aa~~g~pL~~~~e~l~ii~~~~~~~~l~~~l~~~~~vVlmk~~ 180 (238)
T PRK05948 132 --------CSPLAAAAALGIPLTLGSQRLAILPALYHLEELEQALTWADVVVLMKVS 180 (238)
T ss_pred --------hHHHHHHHHhCCCeecCCCeEEEEcCCCCHHHHHHHHhCCCEEEEEECC
Confidence 356888999999997322110 01223444455567877776643
No 318
>cd07364 PCA_45_Dioxygenase_B Subunit B of the Class III extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of protocatechuate. Protocatechuate 4,5-dioxygenase (LigAB) catalyzes the oxidization and subsequent ring-opening of protocatechuate (or 3,4-dihydroxybenzoic acid, PCA), an intermediate in the breakdown of lignin and other compounds. Protocatechuate 4,5-dioxygenase is an aromatic ring opening dioxygenase belonging to the class III extradiol enzyme family, a group of enyzmes that cleaves aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon using a non-heme Fe(II). LigAB is composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. The B subunit (LigB) is the catalytic subunit of LigAB.
Probab=42.05 E-value=37 Score=31.98 Aligned_cols=75 Identities=15% Similarity=0.138 Sum_probs=45.9
Q ss_pred HHHHHhc--CCCEEEEeccccccChhHHhhcCCCEEEEcCCC-----------CCCCCCCcHHHHHHHhCCcEeEEEEEE
Q 020508 197 ELLELVQ--NTDFLVLARYMQILSGKFLRSYGKDVINIHHGL-----------LPSFKGGKPAKQAFDAGVKLIGATSHF 263 (325)
Q Consensus 197 ~~~~~l~--~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpsl-----------LP~yRG~~pi~~ai~~G~~~~GvTvh~ 263 (325)
++-+.++ +||++|+.+-.+. +.-+.+..+.-+|+..+++ ++.|+|...+.+.|.+.....|+.+..
T Consensus 39 ~~~~~~~~~~pD~vVvi~~dH~-~~f~~~~~P~f~i~~~~~~~~~~~~~g~~~~~~~~g~~~LA~~i~~~~~~~g~~~~~ 117 (277)
T cd07364 39 PARDWIKKNKPDVAIIVYNDHA-SAFDLDIIPTFAIGTAEEFQPADEGYGPRPVPDVQGHPDLAWHIAQSLILDDFDMTI 117 (277)
T ss_pred HHHHHHHHhCCCEEEEEcCchH-HhhcccCCCceEEeeccccccCccccCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEe
Confidence 4555554 8999999854332 1111222333466665532 346788888888887766667776666
Q ss_pred ecC-CCCCCC
Q 020508 264 VTE-ELDAGP 272 (325)
Q Consensus 264 v~~-~~D~G~ 272 (325)
.++ ++|.|-
T Consensus 118 ~~~~~lDHG~ 127 (277)
T cd07364 118 VNEMDVDHGL 127 (277)
T ss_pred cCCCCCCcch
Confidence 654 588883
No 319
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=41.47 E-value=1.5e+02 Score=25.95 Aligned_cols=77 Identities=12% Similarity=0.108 Sum_probs=45.2
Q ss_pred HHHHHHHHhhcCCCCceEEEEEeCCCC----CCCchHHHHHHHCCCCEEEec-CCCChhHHHHHHHhc-C-----CCEEE
Q 020508 141 CLVDFLYGWQEGKLPVEITCVISNHDR----GPNSHVIRFLERHGIPYHYLC-AKENEREEELLELVQ-N-----TDFLV 209 (325)
Q Consensus 141 ~l~~Ll~~~~~~~l~~~I~~Vvt~~~~----~~~~~~~~~a~~~gIp~~~~~-~~~~~~~~~~~~~l~-~-----~Dliv 209 (325)
.+.+.++.+++-. +.+=+++|||... +....+..+.+..|||++... ++. ..-+++++.+. . ++=++
T Consensus 63 ~~~~~~~~l~~~~-~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIpvl~h~~kKP-~~~~~i~~~~~~~~~~~~p~eia 140 (168)
T PF09419_consen 63 EYAEWLNELKKQF-GKDRVLIVSNSAGSSDDPDGERAEALEKALGIPVLRHRAKKP-GCFREILKYFKCQKVVTSPSEIA 140 (168)
T ss_pred HHHHHHHHHHHHC-CCCeEEEEECCCCcccCccHHHHHHHHHhhCCcEEEeCCCCC-ccHHHHHHHHhhccCCCCchhEE
Confidence 4555666665422 2223678998731 113457888999999987665 232 22346677664 2 66677
Q ss_pred EeccccccChh
Q 020508 210 LARYMQILSGK 220 (325)
Q Consensus 210 ~~g~~~il~~~ 220 (325)
++| -|++.+-
T Consensus 141 vIG-Drl~TDV 150 (168)
T PF09419_consen 141 VIG-DRLFTDV 150 (168)
T ss_pred EEc-chHHHHH
Confidence 766 3555543
No 320
>PRK10867 signal recognition particle protein; Provisional
Probab=41.46 E-value=3.7e+02 Score=27.10 Aligned_cols=209 Identities=9% Similarity=0.089 Sum_probs=96.1
Q ss_pred hHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCC-hHHHHHHHH-hhhhhhcccceeeeecCCCCCceEE
Q 020508 55 IVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWP-REQMDEDFF-KLSKMFNAMRSVVRVPDIDPKYKVA 132 (325)
Q Consensus 55 IVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~-~~~L~~~l~-~l~~~l~~~~~~~~~~~~~~~~ri~ 132 (325)
...++-..|-+.++|..-....+........ .-.++. ..+ .+++.+.+. ++.+-++-....+... ..+.++.
T Consensus 30 ~l~ei~~~Ll~aDV~~~~~~~~~~~v~~~~~---~~~~~~-~~~~~~~~~~~v~~el~~~l~~~~~~~~~~--~~~p~vI 103 (433)
T PRK10867 30 ALREVRLALLEADVNLPVVKDFIARVKEKAV---GQEVLK-SLTPGQQVIKIVNDELVEILGGENSELNLA--AKPPTVI 103 (433)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHh---hccccc-cCCcHHHHHHHHHHHHHHHhCCCcceeeec--CCCCEEE
Confidence 4677888888888887655544321111000 011122 122 233444444 3444454332223322 2233555
Q ss_pred EEEe--CCc--hHHHHHHHHhhcCCCCceEEEEEeCCCCCCC-chHHHHHHHCCCCEEEecCCCChhHHHHH----HHhc
Q 020508 133 VLAS--KQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPN-SHVIRFLERHGIPYHYLCAKENEREEELL----ELVQ 203 (325)
Q Consensus 133 v~~S--g~g--~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~-~~~~~~a~~~gIp~~~~~~~~~~~~~~~~----~~l~ 203 (325)
+|+. |.| +....|..+++.. -+..|..|-++.-++.. ..+..+|++.|||++..+... ...++. +..+
T Consensus 104 ~~vG~~GsGKTTtaakLA~~l~~~-~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~--dp~~i~~~a~~~a~ 180 (433)
T PRK10867 104 MMVGLQGAGKTTTAGKLAKYLKKK-KKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQ--DPVDIAKAALEEAK 180 (433)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHh-cCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCC--CHHHHHHHHHHHHH
Confidence 5553 333 3334444433322 12455555444432211 245678999999997543111 112222 2222
Q ss_pred --CCCEEEEecccccc-ChhHHhhcCC--CEEEEcCCC----CCCCCCCcHHHHHH--HhCCcEeEEEEEEecCCCCCCC
Q 020508 204 --NTDFLVLARYMQIL-SGKFLRSYGK--DVINIHHGL----LPSFKGGKPAKQAF--DAGVKLIGATSHFVTEELDAGP 272 (325)
Q Consensus 204 --~~Dliv~~g~~~il-~~~~l~~~~~--~~iNiHpsl----LP~yRG~~pi~~ai--~~G~~~~GvTvh~v~~~~D~G~ 272 (325)
+.|++++-.-++.- .+.+.+.... ..+ +|.- +...-|...+.+|- .+....+|+=+=.+|+..-.|.
T Consensus 181 ~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v--~p~evllVlda~~gq~av~~a~~F~~~~~i~giIlTKlD~~~rgG~ 258 (433)
T PRK10867 181 ENGYDVVIVDTAGRLHIDEELMDELKAIKAAV--NPDEILLVVDAMTGQDAVNTAKAFNEALGLTGVILTKLDGDARGGA 258 (433)
T ss_pred hcCCCEEEEeCCCCcccCHHHHHHHHHHHHhh--CCCeEEEEEecccHHHHHHHHHHHHhhCCCCEEEEeCccCcccccH
Confidence 68999987766542 3443332100 011 2221 23345666666553 3344556666655555444554
Q ss_pred eE
Q 020508 273 II 274 (325)
Q Consensus 273 Ii 274 (325)
++
T Consensus 259 al 260 (433)
T PRK10867 259 AL 260 (433)
T ss_pred HH
Confidence 43
No 321
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=41.18 E-value=2.7e+02 Score=28.06 Aligned_cols=152 Identities=12% Similarity=0.129 Sum_probs=65.6
Q ss_pred hHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCh-HHHHH-HHHhhhhhhcccceeeeecCCCCCceEE
Q 020508 55 IVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPR-EQMDE-DFFKLSKMFNAMRSVVRVPDIDPKYKVA 132 (325)
Q Consensus 55 IVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~-~~L~~-~l~~l~~~l~~~~~~~~~~~~~~~~ri~ 132 (325)
.+.++-..|-++++|..-....+....... ..-.+|. ..+. +.+.+ -.+++.+-++-....+..+ .++..|+
T Consensus 26 ~l~ei~~aLl~adV~~~~~~~~~~~v~~~~---~~~~~~~-~~~~~~~~~~~v~~~L~~~l~~~~~~~~~~--~~p~vI~ 99 (437)
T PRK00771 26 VVKDIQRALLQADVNVKLVKELSKSIKERA---LEEEPPK-GLTPREHVIKIVYEELVKLLGEETEPLVLP--LKPQTIM 99 (437)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHH---hcccccc-cCCcHHHHHHHHHHHHHHHhCCCccccccC--CCCeEEE
Confidence 455677777777777665444432111100 0001232 2222 23222 2233444444332111111 2333344
Q ss_pred EEE-eCCc--hHHHHHHHHhhcCCCCceEEEEEeCCCCCC-CchHHHHHHHCCCCEEEecCCCChhH--HHHHHHhcCCC
Q 020508 133 VLA-SKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-NSHVIRFLERHGIPYHYLCAKENERE--EELLELVQNTD 206 (325)
Q Consensus 133 v~~-Sg~g--~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~-~~~~~~~a~~~gIp~~~~~~~~~~~~--~~~~~~l~~~D 206 (325)
+.+ .|.| +....|...++.. +..+..|-++.-++. ...+..+|++.|+|++..+...+..+ .+.++.++..|
T Consensus 100 lvG~~GsGKTTtaakLA~~L~~~--g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~~~~D 177 (437)
T PRK00771 100 LVGLQGSGKTTTAAKLARYFKKK--GLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKFKKAD 177 (437)
T ss_pred EECCCCCcHHHHHHHHHHHHHHc--CCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHhhcCC
Confidence 433 2334 3444555544433 345555544433221 12367789999999875331111100 12222223458
Q ss_pred EEEEeccc
Q 020508 207 FLVLARYM 214 (325)
Q Consensus 207 liv~~g~~ 214 (325)
++++=.=+
T Consensus 178 vVIIDTAG 185 (437)
T PRK00771 178 VIIVDTAG 185 (437)
T ss_pred EEEEECCC
Confidence 87775543
No 322
>PRK13820 argininosuccinate synthase; Provisional
Probab=41.04 E-value=95 Score=30.93 Aligned_cols=57 Identities=16% Similarity=-0.003 Sum_probs=37.5
Q ss_pred CceEEEEEeCCc--hHHHHHHHHhhcCCCCc-eEEEEEeCCCCCC--CchHHHHHHHCCCCEEEec
Q 020508 128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPV-EITCVISNHDRGP--NSHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 128 ~~ri~v~~Sg~g--~~l~~Ll~~~~~~~l~~-~I~~Vvt~~~~~~--~~~~~~~a~~~gIp~~~~~ 188 (325)
..||++..||.- +.+..++.. .++. ++.+|..+...+. -..+.+.|+++|||++.++
T Consensus 2 ~~kVvvA~SGGvDSsvll~lL~e----~~g~~~Viav~vd~g~~~~e~~~a~~~a~~lGi~~~vvd 63 (394)
T PRK13820 2 MKKVVLAYSGGLDTSVCVPLLKE----KYGYDEVITVTVDVGQPEEEIKEAEEKAKKLGDKHYTID 63 (394)
T ss_pred CCeEEEEEeCcHHHHHHHHHHHH----hcCCCEEEEEEEECCCChHHHHHHHHHHHHcCCCEEEEe
Confidence 358999999962 344444432 1344 7888877653211 1347899999999998877
No 323
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=40.91 E-value=1e+02 Score=23.29 Aligned_cols=60 Identities=12% Similarity=0.023 Sum_probs=41.9
Q ss_pred CCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcccc
Q 020508 50 PDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR 117 (325)
Q Consensus 50 ~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~ 117 (325)
+-..|...++-+.|.++|++++.+-+-++ .+.+.++-. ..+.+.+.+-++++.++++.+.
T Consensus 12 n~evGF~rk~L~I~E~~~is~Eh~PSGID------~~Siii~~~--~~~~~~~~~i~~~i~~~~~pD~ 71 (76)
T cd04911 12 NREVGFGRKLLSILEDNGISYEHMPSGID------DISIIIRDN--QLTDEKEQKILAEIKEELHPDE 71 (76)
T ss_pred cchhcHHHHHHHHHHHcCCCEeeecCCCc------cEEEEEEcc--ccchhhHHHHHHHHHHhcCCCE
Confidence 45689999999999999999998777443 233444333 2344466666777777777764
No 324
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=40.84 E-value=1.8e+02 Score=29.35 Aligned_cols=249 Identities=8% Similarity=0.056 Sum_probs=111.8
Q ss_pred EEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHH-HHHHHHhhhhhhcccceeeeecC
Q 020508 46 VFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQ-MDEDFFKLSKMFNAMRSVVRVPD 124 (325)
Q Consensus 46 tv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~-L~~~l~~l~~~l~~~~~~~~~~~ 124 (325)
|+.-.|+.-....+-..|-+.|++-.-...-+......+. ..+. .+.+. ....++.+.+.+.++.+.+....
T Consensus 147 ~i~~~~~~~~~~~L~~~Ll~~gV~~~la~~Li~~l~~~~~---~~~~----~~~~~~~~~l~~~L~~~l~~~~~~~~~~g 219 (432)
T PRK12724 147 TIVRKEKDSPLQRLGERLVREGMSQSYVEEMASKLEERLS---PVDQ----GRNHNVTERAVTYLEERVSVDSDLFSGTG 219 (432)
T ss_pred cccHhhhhhHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhc---cccc----cchHHHHHHHHHHHHHhcccchhhhhhcc
Confidence 3445667777788888888888876533332211111110 0111 11222 22223333444444332111111
Q ss_pred CCCCceEEEEE-eCCc--hHHHHHHHHhhcCCCCceEEEEEeCCCCCC-CchHHHHHHHCCCCEEEecCCCChhHHHHHH
Q 020508 125 IDPKYKVAVLA-SKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-NSHVIRFLERHGIPYHYLCAKENEREEELLE 200 (325)
Q Consensus 125 ~~~~~ri~v~~-Sg~g--~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~-~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~ 200 (325)
..++.-+++++ +|.| +.+..|....... .+..|..+-++.-+.. ...+..+|+..|+|+.... .-.++.+
T Consensus 220 ~~~~~vi~lvGptGvGKTTtaaKLA~~~~~~-~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~-----~~~~l~~ 293 (432)
T PRK12724 220 KNQRKVVFFVGPTGSGKTTSIAKLAAKYFLH-MGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVK-----DIKKFKE 293 (432)
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHHHh-cCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehH-----HHHHHHH
Confidence 11222344443 3444 4445555432111 1234443333332211 1346788899999986432 1124444
Q ss_pred Hhc--CCCEEEEe--ccccccChhHHhhcC-------C-CEEEEcCCCCCCCCCCcHHHHHHH--hCCcEeEEEEEEecC
Q 020508 201 LVQ--NTDFLVLA--RYMQILSGKFLRSYG-------K-DVINIHHGLLPSFKGGKPAKQAFD--AGVKLIGATSHFVTE 266 (325)
Q Consensus 201 ~l~--~~Dliv~~--g~~~il~~~~l~~~~-------~-~~iNiHpslLP~yRG~~pi~~ai~--~G~~~~GvTvh~v~~ 266 (325)
.++ +.|++++= |++..= ...++.+. . .-+..|- -|+.--|..-+..++. ......|+=+=++|+
T Consensus 294 ~l~~~~~D~VLIDTaGr~~rd-~~~l~eL~~~~~~~~~~~~~e~~L-VLsAt~~~~~~~~~~~~f~~~~~~glIlTKLDE 371 (432)
T PRK12724 294 TLARDGSELILIDTAGYSHRN-LEQLERMQSFYSCFGEKDSVENLL-VLSSTSSYHHTLTVLKAYESLNYRRILLTKLDE 371 (432)
T ss_pred HHHhCCCCEEEEeCCCCCccC-HHHHHHHHHHHHhhcCCCCCeEEE-EEeCCCCHHHHHHHHHHhcCCCCCEEEEEcccC
Confidence 453 78988887 554321 12222211 0 0111221 2344455555544443 334567777777787
Q ss_pred CCCCCCeEEEE---EEeCCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020508 267 ELDAGPIIEQM---VERVSH-------RDNLRTFVQKSEDVEKQCLAKAIKSYC 310 (325)
Q Consensus 267 ~~D~G~Ii~Q~---~~~I~~-------~dt~~~l~~r~~~~~~~ll~~al~~i~ 310 (325)
.---|.|+... ..||.. .++......+ .-...-+|++-+..++
T Consensus 372 t~~~G~il~i~~~~~lPI~ylt~GQ~VPeDi~~A~~~-~l~~~i~~~~~~~~~~ 424 (432)
T PRK12724 372 ADFLGSFLELADTYSKSFTYLSVGQEVPFDILNATKN-LMAECVVFPEKIAELR 424 (432)
T ss_pred CCCccHHHHHHHHHCCCEEEEecCCCCCCCHHHhhHH-HHHHHhcChHhhhhhc
Confidence 76667665432 222211 1222222211 1244556777777765
No 325
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=40.76 E-value=81 Score=31.00 Aligned_cols=109 Identities=17% Similarity=0.241 Sum_probs=53.2
Q ss_pred CCceEEEEEeCC-chHHHHHHHHhhcCC----CCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecC-C--CCh-hHHH
Q 020508 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGK----LPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA-K--ENE-REEE 197 (325)
Q Consensus 127 ~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~----l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~-~--~~~-~~~~ 197 (325)
.++||+|+++|. |+.+..++.. ++. .+++|.. ....+........+.-.+.+....+.|. + .+. -..+
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~--n~~~~~~~~~~V~l-w~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsd 86 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGE--NTQRNYIFHNEVRM-WVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSD 86 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHh--cCCcccCCCCeEEE-EEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecC
Confidence 468999999997 7888777753 221 1245544 3333210111223333333322223331 1 011 0123
Q ss_pred HHHHhcCCCEEEEeccccccChhHHhhcCC--------CEEEEcCCCCCC
Q 020508 198 LLELVQNTDFLVLARYMQILSGKFLRSYGK--------DVINIHHGLLPS 239 (325)
Q Consensus 198 ~~~~l~~~Dliv~~g~~~il~~~~l~~~~~--------~~iNiHpslLP~ 239 (325)
+.+.++++|+++++-=++.+++ +++..+. .+|++=-|+-+.
T Consensus 87 l~eav~~aDiIvlAVPsq~l~~-vl~~l~~~~~l~~~~~iIS~aKGIe~~ 135 (365)
T PTZ00345 87 LKEAVEDADLLIFVIPHQFLES-VLSQIKENNNLKKHARAISLTKGIIVE 135 (365)
T ss_pred HHHHHhcCCEEEEEcChHHHHH-HHHHhccccccCCCCEEEEEeCCcccC
Confidence 4455668899888755555543 3333321 256666666554
No 326
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=40.73 E-value=1.2e+02 Score=32.03 Aligned_cols=78 Identities=9% Similarity=0.156 Sum_probs=50.6
Q ss_pred CCceEEEEEeCC-ch-HHHHHHHHhhcCCCCceEEEEEeCCCCCCC----chHHHHHHH--CCCCEEEecCCCChhHHHH
Q 020508 127 PKYKVAVLASKQ-EH-CLVDFLYGWQEGKLPVEITCVISNHDRGPN----SHVIRFLER--HGIPYHYLCAKENEREEEL 198 (325)
Q Consensus 127 ~~~ri~v~~Sg~-g~-~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~----~~~~~~a~~--~gIp~~~~~~~~~~~~~~~ 198 (325)
+..||+++++|. ++ ++..|+. .| -.+|.+|+++.. ..+ ..+.+.|++ -+|++..++. ..++.+
T Consensus 128 R~akVlVlG~Gg~~s~lv~sL~~---sG--~~~I~~vd~D~v-~SNlnRIgEl~e~A~~~n~~v~v~~i~~---~~~~dl 198 (637)
T TIGR03693 128 RNAKILAAGSGDFLTKLVRSLID---SG--FPRFHAIVTDAE-EHALDRIHELAEIAEETDDALLVQEIDF---AEDQHL 198 (637)
T ss_pred hcccEEEEecCchHHHHHHHHHh---cC--CCcEEEEecccc-chhhhHHHHHHHHHHHhCCCCceEeccC---CcchhH
Confidence 357999999997 44 5555654 33 256778888765 221 135677776 3577766552 224567
Q ss_pred HHHhcCCCEEEEecc
Q 020508 199 LELVQNTDFLVLARY 213 (325)
Q Consensus 199 ~~~l~~~Dliv~~g~ 213 (325)
.+.++..|+|+++.=
T Consensus 199 ~ev~~~~DiVi~vsD 213 (637)
T TIGR03693 199 HEAFEPADWVLYVSD 213 (637)
T ss_pred HHhhcCCcEEEEECC
Confidence 777778999999874
No 327
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=40.57 E-value=1.1e+02 Score=31.52 Aligned_cols=191 Identities=14% Similarity=0.103 Sum_probs=103.4
Q ss_pred eEEEEEEcC-CCcchHHHHHHHHHhcCCeEeEeeeec---c---C-CCCeEEEEE-------------------EEEeCC
Q 020508 42 HGIHVFHCP-DEVGIVAKLSECIASRGGNILAADVFV---P---E-KKNVFYSRS-------------------EFIFDP 94 (325)
Q Consensus 42 ~~~ltv~g~-DrpGIVa~Vt~~La~~giNI~~l~~~~---~---~-~~g~F~~~~-------------------~v~~p~ 94 (325)
+..+.+.|. .-+|=+..+.+.|.+.|+++.-.-+-. + . ....+.+.+ .+.++
T Consensus 202 ~~~VNliG~~n~~gD~~eik~lLe~~Gl~v~~~~~gg~t~~ei~~~~~A~lniv~~~~~~~~~A~~Leer~GiP~~~~~- 280 (513)
T TIGR01861 202 KHVINYVGEYNIQGDQEVMVDYFQRMGIQVLSTFTGNGSYDDLRGMHRAHLNVLECARSAEYICNELRKRYGIPRLDID- 280 (513)
T ss_pred CCeEEEeCCCCCccCHHHHHHHHHHCCCeEEEEeCCCCCHHHHHhhccCCEEEEECHHHHHHHHHHHHHHhCCCeEecC-
Confidence 455666664 778999999999999999998543321 0 0 011222211 11222
Q ss_pred CCCChHHHHHHHHhhhhhhcccce--------eee----e---cCCCCCceEEEEEeCCchHHHHHHHHhhcCCCCceEE
Q 020508 95 IKWPREQMDEDFFKLSKMFNAMRS--------VVR----V---PDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEIT 159 (325)
Q Consensus 95 ~~~~~~~L~~~l~~l~~~l~~~~~--------~~~----~---~~~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~ 159 (325)
....+...+-|..+++-+|++.- .-+ + ...-.-+|+++++-+. -+-.+...+. .+++.+++
T Consensus 281 -~~Gi~~Td~~Lr~la~~~g~~~~~e~~I~~e~~~~r~~Ld~~~~~L~GKrvai~~gg~--~~~~~~~~l~-~ElGmevv 356 (513)
T TIGR01861 281 -GFGFEPLAASLRKVAMFFGIEDEAQAIIDEETARWKPELDWYKERLKGKKVCLWPGGS--KLWHWAHVIE-EEMGLKVV 356 (513)
T ss_pred -cCCHHHHHHHHHHHHHHhCCChhHhHhhHHHHHHHHHHHHHHHHhcCCCEEEEECCch--HHHHHHHHHH-HhCCCEEE
Confidence 24467777777778777774411 000 0 0111247888876443 2222332222 24688999
Q ss_pred EEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhc--CCCEEEEeccccccChhHHhhcCCCEEEEcCCCC
Q 020508 160 CVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLL 237 (325)
Q Consensus 160 ~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~--~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslL 237 (325)
++++.... .....+..+..+-....++. .++-+..+.++ ++|+++.-++.+.+-. +....++..|+..-
T Consensus 357 ~~~t~~~~--~~d~~~~~~~~~~~~~~i~D---~~~~e~~~~l~~~~~Dllig~s~~~~~A~----k~gIP~ld~~~~~~ 427 (513)
T TIGR01861 357 SVYSKFGH--QGDMEKGVARCGEGALAIDD---PNELEGLEAMEMLKPDIILTGKRPGEVSK----KMRVPYLNAHAYHN 427 (513)
T ss_pred EEeccCCC--HHHHHHHHHhCCCCcEEecC---CCHHHHHHHHHhcCCCEEEecCccchhHh----hcCCCEEEccCCCC
Confidence 98885421 12233344454443444431 22334445554 8999999988775433 34555777765532
Q ss_pred -C--CCCCCcHH
Q 020508 238 -P--SFKGGKPA 246 (325)
Q Consensus 238 -P--~yRG~~pi 246 (325)
| -|+|.--+
T Consensus 428 ~p~~GY~G~~~l 439 (513)
T TIGR01861 428 GPYKGFEGWVRF 439 (513)
T ss_pred CCcchHhhHHHH
Confidence 3 47775443
No 328
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=40.43 E-value=59 Score=31.73 Aligned_cols=55 Identities=20% Similarity=0.154 Sum_probs=34.8
Q ss_pred ceEEEEEeCCc-h-HHHHHHHHhhcCCCCceEEEEEeCC-CC----C-----C---CchHHHHHHHCCCCEEEec
Q 020508 129 YKVAVLASKQE-H-CLVDFLYGWQEGKLPVEITCVISNH-DR----G-----P---NSHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 129 ~ri~v~~Sg~g-~-~l~~Ll~~~~~~~l~~~I~~Vvt~~-~~----~-----~---~~~~~~~a~~~gIp~~~~~ 188 (325)
+||+|..||.- | .+..|+.. . +.+|.+|..+. +. . . -..+.++|+++|||++.++
T Consensus 1 ~kVlValSGGvDSsv~a~lL~~--~---G~~V~~v~~~~~~~~~~~~~~~c~~~~~~~~a~~va~~lgIp~~vid 70 (352)
T TIGR00420 1 KKVIVGLSGGVDSSVSAYLLKQ--Q---GYEVVGVFMKNWEEDDKNDGHGCTSAEDLRDAQAICEKLGIPLEKVN 70 (352)
T ss_pred CeEEEEEeCCHHHHHHHHHHHH--c---CCeEEEEEEEcccccccccccCcCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 48999999863 4 33344433 2 36888886631 00 0 0 0235788999999998776
No 329
>PRK13243 glyoxylate reductase; Reviewed
Probab=40.31 E-value=3.4e+02 Score=26.04 Aligned_cols=153 Identities=15% Similarity=0.191 Sum_probs=86.4
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCC
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 206 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 206 (325)
.++|+|++.|. |..+...+..+ +.+|. ++ ++.. . + ..+...|..+ . ++.+.++++|
T Consensus 150 gktvgIiG~G~IG~~vA~~l~~~-----G~~V~-~~-d~~~--~-~--~~~~~~~~~~---~--------~l~ell~~aD 206 (333)
T PRK13243 150 GKTIGIIGFGRIGQAVARRAKGF-----GMRIL-YY-SRTR--K-P--EAEKELGAEY---R--------PLEELLRESD 206 (333)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-----CCEEE-EE-CCCC--C-h--hhHHHcCCEe---c--------CHHHHHhhCC
Confidence 47999999886 67766665542 35654 33 3321 1 1 1234445432 1 2344556789
Q ss_pred EEEEecc-----ccccChhHHhhcCCC--EEEEcCCCCCCCCCC----cHHHHHHHhCCcEeEE--EEEEecCCCCCCCe
Q 020508 207 FLVLARY-----MQILSGKFLRSYGKD--VINIHHGLLPSFKGG----KPAKQAFDAGVKLIGA--TSHFVTEELDAGPI 273 (325)
Q Consensus 207 liv~~g~-----~~il~~~~l~~~~~~--~iNiHpslLP~yRG~----~pi~~ai~~G~~~~Gv--Tvh~v~~~~D~G~I 273 (325)
++++.-- ..++.+++++..+.+ +||+= ||. ..+..|+.+| +..|+ -++.-++-. .-|.
T Consensus 207 iV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~a-------Rg~~vd~~aL~~aL~~g-~i~gAaLDV~~~EP~~-~~pL 277 (333)
T PRK13243 207 FVSLHVPLTKETYHMINEERLKLMKPTAILVNTA-------RGKVVDTKALVKALKEG-WIAGAGLDVFEEEPYY-NEEL 277 (333)
T ss_pred EEEEeCCCChHHhhccCHHHHhcCCCCeEEEECc-------CchhcCHHHHHHHHHcC-CeEEEEeccCCCCCCC-Cchh
Confidence 9888753 467888889888766 45552 664 4567778887 44554 444443322 3456
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCce
Q 020508 274 IEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRV 314 (325)
Q Consensus 274 i~Q~~~~I~~~dt~~~l~~r~~~~~~~ll~~al~~i~~g~~ 314 (325)
+....+-+.|.-...+.. ......+.+.+.+..+.+|+.
T Consensus 278 ~~~~nvilTPHia~~t~e--~~~~~~~~~~~ni~~~~~g~~ 316 (333)
T PRK13243 278 FSLKNVVLAPHIGSATFE--AREGMAELVAENLIAFKRGEV 316 (333)
T ss_pred hcCCCEEECCcCCcCHHH--HHHHHHHHHHHHHHHHHcCCC
Confidence 655666666654332221 122333455666677777763
No 330
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=40.25 E-value=2.4e+02 Score=28.51 Aligned_cols=139 Identities=10% Similarity=0.188 Sum_probs=67.1
Q ss_pred CceEEEEE-eCCc-hHH-HHHHHHhhcCCCCceEEEEEeCCCCCC-CchHHHHHHHCCCCEEEecCCCChhHHHHHHHh-
Q 020508 128 KYKVAVLA-SKQE-HCL-VDFLYGWQEGKLPVEITCVISNHDRGP-NSHVIRFLERHGIPYHYLCAKENEREEELLELV- 202 (325)
Q Consensus 128 ~~ri~v~~-Sg~g-~~l-~~Ll~~~~~~~l~~~I~~Vvt~~~~~~-~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l- 202 (325)
+.+|++++ .|.| |.+ ..|...+... +..+..+-+++.+.. -..+..+|+..|+|+.... ...++.+.+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~--GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~-----d~~~L~~aL~ 313 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGK--KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR-----DEAAMTRALT 313 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHc--CCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecC-----CHHHHHHHHH
Confidence 45677766 3445 333 4343333322 234443334332211 1346778899999998543 123343443
Q ss_pred --c---CCCEEEEeccccccChh-HHhhc----CC-CEEEEcCCCCCC-CCCCcHH--HHHHHhCCcEeEEEEEEecCCC
Q 020508 203 --Q---NTDFLVLARYMQILSGK-FLRSY----GK-DVINIHHGLLPS-FKGGKPA--KQAFDAGVKLIGATSHFVTEEL 268 (325)
Q Consensus 203 --~---~~Dliv~~g~~~il~~~-~l~~~----~~-~~iNiHpslLP~-yRG~~pi--~~ai~~G~~~~GvTvh~v~~~~ 268 (325)
+ +.|++++=.-++-.... .++.. +. .-..+|-- |+. .++..-. ...+ +.....|+=+=++|+.-
T Consensus 314 ~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLV-LsATtk~~d~~~i~~~F-~~~~idglI~TKLDET~ 391 (436)
T PRK11889 314 YFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLT-LSASMKSKDMIEIITNF-KDIHIDGIVFTKFDETA 391 (436)
T ss_pred HHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEE-ECCccChHHHHHHHHHh-cCCCCCEEEEEcccCCC
Confidence 2 47999987766644322 12211 10 00011111 333 3332322 2222 23566777777777776
Q ss_pred CCCCeEE
Q 020508 269 DAGPIIE 275 (325)
Q Consensus 269 D~G~Ii~ 275 (325)
--|.|+.
T Consensus 392 k~G~iLn 398 (436)
T PRK11889 392 SSGELLK 398 (436)
T ss_pred CccHHHH
Confidence 6666553
No 331
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=40.07 E-value=41 Score=26.53 Aligned_cols=29 Identities=21% Similarity=0.183 Sum_probs=19.8
Q ss_pred chHHHHHHHCCCCEEEecCCCChhHHHHHHHhc
Q 020508 171 SHVIRFLERHGIPYHYLCAKENEREEELLELVQ 203 (325)
Q Consensus 171 ~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 203 (325)
..+..+|+.++||++.+.. +..++=.++.
T Consensus 48 ~~i~~~c~~~~Ip~~~~~~----tk~eLG~a~G 76 (99)
T PRK01018 48 EDIEYYAKLSGIPVYEYEG----SSVELGTLCG 76 (99)
T ss_pred HHHHHHHHHcCCCEEEECC----CHHHHHHHhC
Confidence 4588999999999876630 1145666664
No 332
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=39.84 E-value=3.9e+02 Score=26.59 Aligned_cols=36 Identities=14% Similarity=0.062 Sum_probs=29.7
Q ss_pred ceEEEEEEcCCC--cchHHHHHHHHHhcCCeEeEeeee
Q 020508 41 THGIHVFHCPDE--VGIVAKLSECIASRGGNILAADVF 76 (325)
Q Consensus 41 ~~~~ltv~g~Dr--pGIVa~Vt~~La~~giNI~~l~~~ 76 (325)
.-..+++.|.+- +|+.+++.+.|+++|+||.-+.|.
T Consensus 301 ~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~ 338 (441)
T TIGR00657 301 NQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQS 338 (441)
T ss_pred CEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEec
Confidence 345678888654 699999999999999999988763
No 333
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=39.82 E-value=1.1e+02 Score=26.85 Aligned_cols=125 Identities=11% Similarity=0.113 Sum_probs=72.3
Q ss_pred chhhhccccceeeeeecccccCCccccccCCCCCCCCcceEEEEEEcCC----CcchHHHHHHHHHhcCCeEeEeeeecc
Q 020508 3 LLRRLSSSLQQVVKFTNRSFKSLKFPGEPIESSVSPTLTHGIHVFHCPD----EVGIVAKLSECIASRGGNILAADVFVP 78 (325)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ltv~g~D----rpGIVa~Vt~~La~~giNI~~l~~~~~ 78 (325)
+|++|+..+.. ......+++++-+++..- +....--.+-.+.++|.- -.--+.++.+.|.+.|.+......+
T Consensus 18 dL~~la~~~~n-~~YePe~fpgli~R~~~P-~~t~lIf~sGKivitGaks~~~~~~a~~~~~~~L~~~g~~~~~~~~~-- 93 (174)
T cd00652 18 DLRKIALAARN-AEYNPKRFPGVIMRLREP-KTTALIFSSGKMVITGAKSEEDAKLAARKYARILQKLGFPVEKFPEF-- 93 (174)
T ss_pred CHHHHHhhCCC-cEECCCccceEEEEcCCC-cEEEEEECCCEEEEEecCCHHHHHHHHHHHHHHHHHcCCCccccCce--
Confidence 35666665543 455556777777777532 111111222356677753 3344677888898999887532221
Q ss_pred CCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhccc---ceeeeecCCCCCceEEEEEeCC
Q 020508 79 EKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM---RSVVRVPDIDPKYKVAVLASKQ 138 (325)
Q Consensus 79 ~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~---~~~~~~~~~~~~~ri~v~~Sg~ 138 (325)
-.-.+...+++|- +.+++.+...+.+-+ +++.+ ..++|+.. ++..+.+|.||.
T Consensus 94 ---~v~NIvas~~l~~-~i~L~~la~~~~~~~-~YePe~fpgli~r~~~--pk~t~lIF~sGk 149 (174)
T cd00652 94 ---KVQNIVASCDLGF-PIRLEELALKHPENA-SYEPELFPGLIYRMDE--PKVVLLIFVSGK 149 (174)
T ss_pred ---EEEEEEEEEECCC-cccHHHHHhhhhccc-EECCccCceEEEEecC--CcEEEEEEcCCE
Confidence 1334567777887 788888887765222 22222 12345554 678888888886
No 334
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=39.59 E-value=4.4e+02 Score=27.09 Aligned_cols=156 Identities=13% Similarity=0.117 Sum_probs=86.3
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCC
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 206 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 206 (325)
.++|+|++-|. |..+...+.. .+.+|.+ .++.. . .+.+.+.|+... + ++.+.++++|
T Consensus 138 gktvgIiG~G~IG~~vA~~l~~-----fG~~V~~--~d~~~---~--~~~~~~~g~~~~--~--------~l~ell~~aD 195 (525)
T TIGR01327 138 GKTLGVIGLGRIGSIVAKRAKA-----FGMKVLA--YDPYI---S--PERAEQLGVELV--D--------DLDELLARAD 195 (525)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-----CCCEEEE--ECCCC---C--hhHHHhcCCEEc--C--------CHHHHHhhCC
Confidence 46899988776 5555555543 2455543 23311 0 233455665432 1 2344555789
Q ss_pred EEEEecc-----ccccChhHHhhcCCCEEEEcCCCCCCCCCC----cHHHHHHHhCCc-EeEEEEEEecCCCCCCCeEEE
Q 020508 207 FLVLARY-----MQILSGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQAFDAGVK-LIGATSHFVTEELDAGPIIEQ 276 (325)
Q Consensus 207 liv~~g~-----~~il~~~~l~~~~~~~iNiHpslLP~yRG~----~pi~~ai~~G~~-~~GvTvh~v~~~~D~G~Ii~Q 276 (325)
++++.-- ..+|.++.++..+.+.+=+--| ||. ..+..|+.+|.- -.|.-++.-++-.| -|.+.-
T Consensus 196 vV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~a-----RG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~-~pL~~~ 269 (525)
T TIGR01327 196 FITVHTPLTPETRGLIGAEELAKMKKGVIIVNCA-----RGGIIDEAALYEALEEGHVRAAALDVFEKEPPTD-NPLFDL 269 (525)
T ss_pred EEEEccCCChhhccCcCHHHHhcCCCCeEEEEcC-----CCceeCHHHHHHHHHcCCeeEEEEecCCCCCCCC-ChhhcC
Confidence 9887543 5678889999887764433333 664 467788888852 34555555555333 356555
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCc
Q 020508 277 MVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELR 313 (325)
Q Consensus 277 ~~~~I~~~dt~~~l~~r~~~~~~~ll~~al~~i~~g~ 313 (325)
..+-+.|.-...+- .......+.+.+.+..+.+|+
T Consensus 270 ~nvi~TPHia~~t~--e~~~~~~~~~~~ni~~~~~g~ 304 (525)
T TIGR01327 270 DNVIATPHLGASTR--EAQENVATQVAEQVLDALKGL 304 (525)
T ss_pred CCeEECCCccccHH--HHHHHHHHHHHHHHHHHHcCC
Confidence 56666665433222 112233345556666666665
No 335
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=39.46 E-value=1e+02 Score=28.54 Aligned_cols=68 Identities=24% Similarity=0.359 Sum_probs=41.5
Q ss_pred HHHHHHhhcCCCCceEEEEEeCCCCCCCchH--HHHHHHCC--CCEEEecCCCChhHHHHHHHhc--CCCEEEEeccccc
Q 020508 143 VDFLYGWQEGKLPVEITCVISNHDRGPNSHV--IRFLERHG--IPYHYLCAKENEREEELLELVQ--NTDFLVLARYMQI 216 (325)
Q Consensus 143 ~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~--~~~a~~~g--Ip~~~~~~~~~~~~~~~~~~l~--~~Dliv~~g~~~i 216 (325)
..|..++++..+ .+|..+|.|+... .+.+ ..+..+.. ||++..+ ..+.++.+.|. +-|++|.-.++++
T Consensus 49 e~Lr~kL~~~g~-~~I~f~vVN~~~~-~s~~~~~~l~~r~~~~ipVyqq~----~~q~dvW~~L~G~kdD~~iyDRCGrL 122 (238)
T PF04592_consen 49 EDLREKLENEGL-SNISFMVVNHQGE-HSRLKYWELKRRVSEHIPVYQQD----ENQPDVWELLNGSKDDFLIYDRCGRL 122 (238)
T ss_pred HHHHHHHHHCCC-CceEEEEEcCCCc-chhHHHHHHHHhCCCCCceecCC----ccccCHHHHhCCCcCcEEEEeccCcE
Confidence 444444544443 4788888887542 2222 34555554 9998544 12346788887 6888888777654
No 336
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=39.21 E-value=2.7e+02 Score=27.73 Aligned_cols=109 Identities=12% Similarity=0.142 Sum_probs=58.4
Q ss_pred CceEEEEEeCCchHHHHHHHHhh-cCCCCceEEEEEeCCCCCC-----C------chHHHHHHHCCCCEEEec-CC-CCh
Q 020508 128 KYKVAVLASKQEHCLVDFLYGWQ-EGKLPVEITCVISNHDRGP-----N------SHVIRFLERHGIPYHYLC-AK-ENE 193 (325)
Q Consensus 128 ~~ri~v~~Sg~g~~l~~Ll~~~~-~~~l~~~I~~Vvt~~~~~~-----~------~~~~~~a~~~gIp~~~~~-~~-~~~ 193 (325)
+.|++++++|. ..+.+++.++ ++..+.++++++.+.+... + ..+.+.++++++....+. .. .+.
T Consensus 125 ~rrvlIiGag~--~~~~l~~~l~~~~~~g~~vvGfidd~~~~~~~~i~g~pVlg~~~l~~~i~~~~id~ViIAip~~~~~ 202 (456)
T TIGR03022 125 GRPAVIIGAGQ--NAAILYRALQSNPQLGLRPLAVVDTDPAASGRLLTGLPVVGADDALRLYARTRYAYVIVAMPGTQAE 202 (456)
T ss_pred CceEEEEeCCH--HHHHHHHHHhhCccCCcEEEEEEeCCccccccccCCCcccChhHHHHHHHhCCCCEEEEecCCccHH
Confidence 46788877664 3334444433 3445688999987543211 1 235667888898854443 11 111
Q ss_pred hHHHHHHHhc--CC-CEEEEeccccccChhH--HhhcCCCEEEEcCCCCC
Q 020508 194 REEELLELVQ--NT-DFLVLARYMQILSGKF--LRSYGKDVINIHHGLLP 238 (325)
Q Consensus 194 ~~~~~~~~l~--~~-Dliv~~g~~~il~~~~--l~~~~~~~iNiHpslLP 238 (325)
.-.++++.++ .. ++.++..+..+...+. ...-...+++++..++.
T Consensus 203 ~~~~ll~~l~~~~v~~V~~vP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (456)
T TIGR03022 203 DMARLVRKLGALHFRNVLIVPSLFGLPNLWISPRFIGGVLGLRVRNNLLL 252 (456)
T ss_pred HHHHHHHHHHhCCCeEEEEeCcccccccccceeeeeCCeeEEEEeccccc
Confidence 1235555554 45 6677666655554332 11113346888876553
No 337
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=39.12 E-value=4e+02 Score=26.48 Aligned_cols=194 Identities=10% Similarity=-0.044 Sum_probs=101.5
Q ss_pred eEEEEEEc-CCCcchHHHHHHHHHhcCCeEeE-eeeec--c---CCC-CeEEEEEE--------------EEeCC---CC
Q 020508 42 HGIHVFHC-PDEVGIVAKLSECIASRGGNILA-ADVFV--P---EKK-NVFYSRSE--------------FIFDP---IK 96 (325)
Q Consensus 42 ~~~ltv~g-~DrpGIVa~Vt~~La~~giNI~~-l~~~~--~---~~~-g~F~~~~~--------------v~~p~---~~ 96 (325)
+..+.+.| ..-+|=+.++.+.|.+.|+++.- +...+ + .+. ..+...+- +.+|- .+
T Consensus 172 ~~~VNiiG~~~~~~d~~el~~lL~~~Gi~v~~~~~~~~t~eei~~~~~A~lniv~~~~~~~~~a~~Le~~fGiP~~~~~p 251 (421)
T cd01976 172 PYDVNIIGDYNIGGDAWASRILLEEMGLRVVAQWSGDGTLNEMENAHKAKLNLIHCYRSMNYIARMMEEKYGIPWMEYNF 251 (421)
T ss_pred CCeEEEEecCCCCccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhcccCCEEEEECcHHHHHHHHHHHHHhCCcEEeccc
Confidence 34566666 45577889999999999999973 22111 0 111 12222210 11110 03
Q ss_pred CChHHHHHHHHhhhhhhccccee-----ee------------ecCCCCCceEEEEEeCC-chHHHHHHHHhhcCCCCceE
Q 020508 97 WPREQMDEDFFKLSKMFNAMRSV-----VR------------VPDIDPKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEI 158 (325)
Q Consensus 97 ~~~~~L~~~l~~l~~~l~~~~~~-----~~------------~~~~~~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I 158 (325)
...+...+-|.++++-+|.+... +. ....-..+|+++++.+. ...+..++ + +++.++
T Consensus 252 ~Gi~~t~~~l~~ia~~~g~~~~~~~e~~i~~e~~~~~~~l~~~~~~L~Gkrv~i~~g~~~~~~~~~~l---~--elGmev 326 (421)
T cd01976 252 FGPTKIAESLRKIAAYFDDEITAKTEEVIAEYKPAMEAVIAKYRPRLEGKTVMLYVGGLRPRHYIGAY---E--DLGMEV 326 (421)
T ss_pred CCHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHH---H--HCCCEE
Confidence 56778888888888877753100 00 00111347888876332 12222222 2 467888
Q ss_pred EEEEeCCCCCCCchHHHHHHHCC-CCEEEecCCCChhHHHHHHHhc--CCCEEEEeccccccChhHHhhcCCCEEEEcCC
Q 020508 159 TCVISNHDRGPNSHVIRFLERHG-IPYHYLCAKENEREEELLELVQ--NTDFLVLARYMQILSGKFLRSYGKDVINIHHG 235 (325)
Q Consensus 159 ~~Vvt~~~~~~~~~~~~~a~~~g-Ip~~~~~~~~~~~~~~~~~~l~--~~Dliv~~g~~~il~~~~l~~~~~~~iNiHps 235 (325)
+.+-+.... +....+..+..+ -++. +. +.+..++.+.++ +||+++--.+.+.+.. +....++.+|..
T Consensus 327 v~~g~~~~~--~~~~~~~~~~~~~~~~i-~~---~~d~~e~~~~i~~~~pDliig~~~~~~~a~----k~giP~~~~~~~ 396 (421)
T cd01976 327 VGTGYEFAH--RDDYERTEVIPKEGTLL-YD---DVTHYELEEFVKRLKPDLIGSGIKEKYVFQ----KMGIPFRQMHSW 396 (421)
T ss_pred EEEEeecCC--HHHHhhHHhhcCCceEE-Ec---CCCHHHHHHHHHHhCCCEEEecCcchhhhh----hcCCCeEeCCcc
Confidence 876552111 111122212211 1222 22 123356777775 8999998877655433 455668888876
Q ss_pred CC--C--CCCCCcHHHHHH
Q 020508 236 LL--P--SFKGGKPAKQAF 250 (325)
Q Consensus 236 lL--P--~yRG~~pi~~ai 250 (325)
-+ | -|+|..-+-..|
T Consensus 397 ~~~~~~~Gy~G~~~~~~~i 415 (421)
T cd01976 397 DYSGPYHGFDGFAIFARDM 415 (421)
T ss_pred ccCCCccchhhHHHHHHHH
Confidence 55 6 588865544444
No 338
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.00 E-value=2.6e+02 Score=26.52 Aligned_cols=77 Identities=12% Similarity=0.212 Sum_probs=47.2
Q ss_pred HHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCCEEEEe-ccccccCh
Q 020508 141 CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLA-RYMQILSG 219 (325)
Q Consensus 141 ~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dliv~~-g~~~il~~ 219 (325)
...+||+...- .+...-+.|+- +...-+.|+..+..+.|.-+....++ ...+.+..+++|++|++ |-..++++
T Consensus 142 avi~lL~~~~i-~l~Gk~vvViG-rS~iVGkPla~lL~~~~atVtichs~----T~~l~~~~~~ADIvI~AvG~p~~i~~ 215 (282)
T PRK14169 142 GIMALLDAYDI-DVAGKRVVIVG-RSNIVGRPLAGLMVNHDATVTIAHSK----TRNLKQLTKEADILVVAVGVPHFIGA 215 (282)
T ss_pred HHHHHHHHhCC-CCCCCEEEEEC-CCccchHHHHHHHHHCCCEEEEECCC----CCCHHHHHhhCCEEEEccCCcCccCH
Confidence 34556665432 12233344554 43334678888888888777655422 12344556689998887 78888998
Q ss_pred hHHh
Q 020508 220 KFLR 223 (325)
Q Consensus 220 ~~l~ 223 (325)
+.+.
T Consensus 216 ~~vk 219 (282)
T PRK14169 216 DAVK 219 (282)
T ss_pred HHcC
Confidence 8764
No 339
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.78 E-value=3.1e+02 Score=26.06 Aligned_cols=77 Identities=14% Similarity=0.283 Sum_probs=46.7
Q ss_pred HHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCCEEEEe-ccccccCh
Q 020508 141 CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLA-RYMQILSG 219 (325)
Q Consensus 141 ~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dliv~~-g~~~il~~ 219 (325)
...+||+...- .+...-+.|+- +...-+.|+..+..+.|--+....+ +...+.+.++++|++|++ |-..++++
T Consensus 144 av~~lL~~~~i-~l~Gk~vvViG-rS~iVG~Pla~lL~~~~atVt~chs----~t~~l~~~~~~ADIvI~AvG~p~~i~~ 217 (284)
T PRK14190 144 GILELLKEYNI-DISGKHVVVVG-RSNIVGKPVGQLLLNENATVTYCHS----KTKNLAELTKQADILIVAVGKPKLITA 217 (284)
T ss_pred HHHHHHHHcCC-CCCCCEEEEEC-CCCccHHHHHHHHHHCCCEEEEEeC----CchhHHHHHHhCCEEEEecCCCCcCCH
Confidence 34556665422 12233344554 4333467888888888876655432 223455566789998887 77888988
Q ss_pred hHHh
Q 020508 220 KFLR 223 (325)
Q Consensus 220 ~~l~ 223 (325)
+.+.
T Consensus 218 ~~ik 221 (284)
T PRK14190 218 DMVK 221 (284)
T ss_pred HHcC
Confidence 8773
No 340
>PRK00973 glucose-6-phosphate isomerase; Provisional
Probab=38.70 E-value=70 Score=32.40 Aligned_cols=56 Identities=9% Similarity=0.078 Sum_probs=33.1
Q ss_pred eEEEEEeCCchHHHH------HHHHhhc-C-CCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecC
Q 020508 130 KVAVLASKQEHCLVD------FLYGWQE-G-KLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 189 (325)
Q Consensus 130 ri~v~~Sg~g~~l~~------Ll~~~~~-~-~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~ 189 (325)
-..+.+|++|++++. +.+.++. | .....+ .++|+++ +..+.++|+++|++++.+|.
T Consensus 134 Tl~iviSKSGtT~ET~~~f~~~~~~l~~~g~~~~~~~-vaiTd~~---~g~L~~~A~~~g~~~f~ip~ 197 (446)
T PRK00973 134 TLFNVISKSGNTAETLANYLIIRGILEKLGLDPKKHL-VFTTDPE---KGKLKKIAEKEGYRTLEIPE 197 (446)
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHHHHHhcCccccceE-EEEcCCC---ccchHHHHHHcCCcEEeeCC
Confidence 355667898864433 2222211 1 112333 3567653 23589999999999998873
No 341
>KOG4120 consensus G/T mismatch-specific thymine DNA glycosylase [Replication, recombination and repair]
Probab=38.59 E-value=33 Score=33.14 Aligned_cols=92 Identities=11% Similarity=0.099 Sum_probs=54.9
Q ss_pred ccChhHHhhcCCCEEEEcCCCCCCCCC-----CcHHHHHHHhCCcEeEEEEEEecCCCCCCCeEEEE----EEeCCCCCC
Q 020508 216 ILSGKFLRSYGKDVINIHHGLLPSFKG-----GKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQM----VERVSHRDN 286 (325)
Q Consensus 216 il~~~~l~~~~~~~iNiHpslLP~yRG-----~~pi~~ai~~G~~~~GvTvh~v~~~~D~G~Ii~Q~----~~~I~~~dt 286 (325)
-+|+-++..+..-++.|.|||.-.|+| +.-.+|-.++-..-+-+-+-+++ .-+...+- ..--.+...
T Consensus 140 tvPD~lc~NldiVIVGiNPGl~aayKGHhyagPgNhFWKcL~~sgL~e~q~t~~~----Dh~Lpk~GiGfTNmvaR~t~g 215 (426)
T KOG4120|consen 140 TVPDYLCENLDIVIVGINPGLTAAYKGHHYAGPGNHFWKCLNKSGLLEAQFTYLN----DHDLPKHGIGFTNMVARPTSG 215 (426)
T ss_pred cCchhhhcCccEEEEecCchhhhhhccCcCCCCcchHHHHHHHhcccHHHhhccc----cccccccccchhheeccCCCC
Confidence 445555555555577888888887765 55689986653222212222222 22222221 122334456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 020508 287 LRTFVQKSEDVEKQCLAKAIKSYCE 311 (325)
Q Consensus 287 ~~~l~~r~~~~~~~ll~~al~~i~~ 311 (325)
..+|..+-.+.+.++|.+-++++.-
T Consensus 216 saDL~~kE~~eG~RIL~eKlqryrP 240 (426)
T KOG4120|consen 216 SADLRKKEMQEGARILYEKLQRYRP 240 (426)
T ss_pred cccccHHHHhcchHHHHHHHHhhCc
Confidence 7788888888899999999988653
No 342
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.46 E-value=2.2e+02 Score=27.16 Aligned_cols=77 Identities=12% Similarity=0.108 Sum_probs=47.3
Q ss_pred HHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCCEEEEe-ccccccCh
Q 020508 141 CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLA-RYMQILSG 219 (325)
Q Consensus 141 ~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dliv~~-g~~~il~~ 219 (325)
...+||+...- .+...=+.|+ .+...-+.|+..+..+.|--+....++ ...+.+..+++|++|+| |-..++++
T Consensus 146 avi~lL~~~~i-~l~Gk~vvVi-GrS~iVGkPla~lL~~~~aTVt~chs~----T~~l~~~~~~ADIvVsAvGkp~~i~~ 219 (294)
T PRK14187 146 GCLYLIKTITR-NLSGSDAVVI-GRSNIVGKPMACLLLGENCTVTTVHSA----TRDLADYCSKADILVAAVGIPNFVKY 219 (294)
T ss_pred HHHHHHHHhCC-CCCCCEEEEE-CCCccchHHHHHHHhhCCCEEEEeCCC----CCCHHHHHhhCCEEEEccCCcCccCH
Confidence 34556665432 2223333444 444334778888888888777655422 12344556689998887 77888998
Q ss_pred hHHh
Q 020508 220 KFLR 223 (325)
Q Consensus 220 ~~l~ 223 (325)
+.+.
T Consensus 220 ~~ik 223 (294)
T PRK14187 220 SWIK 223 (294)
T ss_pred HHcC
Confidence 8765
No 343
>PRK13366 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=38.44 E-value=45 Score=31.65 Aligned_cols=75 Identities=13% Similarity=0.055 Sum_probs=44.1
Q ss_pred HHHHHhc--CCCEEEEeccccccChhHHhhcCCCEEEEcCCC-----------CCCCCCCcHHHHHHHhCCcEeEEEEEE
Q 020508 197 ELLELVQ--NTDFLVLARYMQILSGKFLRSYGKDVINIHHGL-----------LPSFKGGKPAKQAFDAGVKLIGATSHF 263 (325)
Q Consensus 197 ~~~~~l~--~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpsl-----------LP~yRG~~pi~~ai~~G~~~~GvTvh~ 263 (325)
++-+.++ +||++|+.+-.+. ..-+.+..+.-+|+..+.+ .|.|+|...+.+.|.+.....|+.+-.
T Consensus 39 ~i~~~i~~~~PDvvVii~~dH~-~~f~~d~~P~f~Ig~~~~~~~~~~~~g~~~v~~~~g~~eLA~~i~~~l~~~g~~~~~ 117 (284)
T PRK13366 39 FSKQWEKEEKPDVIFLVYNDHA-TAFSLDIIPTFAIGTAAEYQPADEGWGPRPVPKVIGHPDLAAHIAQSVIQDDFDLTI 117 (284)
T ss_pred HHHHHHHHhCCCEEEEEcCCcH-HhhcccCCCceEEeeCceecCcccccCCCCCCCCCCCHHHHHHHHHHHHHCCCCEee
Confidence 4555554 8999998844331 1112222222344443333 356788888888887776677776666
Q ss_pred ecC-CCCCCC
Q 020508 264 VTE-ELDAGP 272 (325)
Q Consensus 264 v~~-~~D~G~ 272 (325)
.++ ++|.|-
T Consensus 118 ~~~~~lDHG~ 127 (284)
T PRK13366 118 VNKMDVDHGL 127 (284)
T ss_pred cCCCCCCccH
Confidence 554 588774
No 344
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=38.33 E-value=53 Score=25.15 Aligned_cols=58 Identities=12% Similarity=0.114 Sum_probs=31.0
Q ss_pred EEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHh
Q 020508 134 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELV 202 (325)
Q Consensus 134 ~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l 202 (325)
+++|....+++ ++.|+ ...+.+-.+-+...-..+..+|+.++||+.+..+ ..++=..+
T Consensus 9 lv~G~~~vlka----Ik~gk--akLViiA~Da~~~~~k~i~~~c~~~~Vpv~~~~t-----~~eLG~A~ 66 (82)
T PRK13601 9 RVVGAKQTLKA----ITNCN--VLQVYIAKDAEEHVTKKIKELCEEKSIKIVYIDT-----MKELGVMC 66 (82)
T ss_pred EEEchHHHHHH----HHcCC--eeEEEEeCCCCHHHHHHHHHHHHhCCCCEEEeCC-----HHHHHHHH
Confidence 44565455444 44443 3433333332211124588899999999975542 23555555
No 345
>PRK06487 glycerate dehydrogenase; Provisional
Probab=38.23 E-value=3.5e+02 Score=25.81 Aligned_cols=109 Identities=16% Similarity=0.184 Sum_probs=63.0
Q ss_pred HHHHhcCCCEEEEe-----ccccccChhHHhhcCCCEEEEcCCCCCCCCCC----cHHHHHHHhCCc-EeEEEEEEecCC
Q 020508 198 LLELVQNTDFLVLA-----RYMQILSGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQAFDAGVK-LIGATSHFVTEE 267 (325)
Q Consensus 198 ~~~~l~~~Dliv~~-----g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~----~pi~~ai~~G~~-~~GvTvh~v~~~ 267 (325)
+.++++++|++++. .-..+|..+.++..+.+.+=+--| ||. ..+..|+.+|.- -.|.-++.-++-
T Consensus 191 l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~a-----RG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~ 265 (317)
T PRK06487 191 LDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTA-----RGGLVDEQALADALRSGHLGGAATDVLSVEPP 265 (317)
T ss_pred HHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECC-----CccccCHHHHHHHHHcCCeeEEEeecCCCCCC
Confidence 44556678988874 346799999999998775444333 774 567888888842 234455555443
Q ss_pred CCCCCeEE--EEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCc
Q 020508 268 LDAGPIIE--QMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELR 313 (325)
Q Consensus 268 ~D~G~Ii~--Q~~~~I~~~dt~~~l~~r~~~~~~~ll~~al~~i~~g~ 313 (325)
.+..|.+. ...+-+.|.-...+. .......+.+.+.+..+.+|+
T Consensus 266 ~~~~pl~~~~~pnvilTPHia~~t~--e~~~~~~~~~~~ni~~~~~g~ 311 (317)
T PRK06487 266 VNGNPLLAPDIPRLIVTPHSAWGSR--EARQRIVGQLAENARAFFAGK 311 (317)
T ss_pred CCCCchhhcCCCCEEECCccccCCH--HHHHHHHHHHHHHHHHHHcCC
Confidence 33345653 244555554322221 112233445556666666664
No 346
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=38.22 E-value=97 Score=26.73 Aligned_cols=106 Identities=15% Similarity=0.254 Sum_probs=61.3
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCC
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 206 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 206 (325)
.++|+|++.|. |..+..+++.+ +.+|.+ +.... .-...+...++.+. ++.++++++|
T Consensus 36 g~tvgIiG~G~IG~~vA~~l~~f-----G~~V~~-~d~~~-----~~~~~~~~~~~~~~-----------~l~ell~~aD 93 (178)
T PF02826_consen 36 GKTVGIIGYGRIGRAVARRLKAF-----GMRVIG-YDRSP-----KPEEGADEFGVEYV-----------SLDELLAQAD 93 (178)
T ss_dssp TSEEEEESTSHHHHHHHHHHHHT-----T-EEEE-EESSC-----HHHHHHHHTTEEES-----------SHHHHHHH-S
T ss_pred CCEEEEEEEcCCcCeEeeeeecC-----CceeEE-ecccC-----Chhhhcccccceee-----------ehhhhcchhh
Confidence 57999987765 56666655543 456543 33221 11123445555321 2344555789
Q ss_pred EEEEecc-----ccccChhHHhhcCCCEEEEcCCCCCCCCCC----cHHHHHHHhCCcEeEEEE
Q 020508 207 FLVLARY-----MQILSGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQAFDAGVKLIGATS 261 (325)
Q Consensus 207 liv~~g~-----~~il~~~~l~~~~~~~iNiHpslLP~yRG~----~pi~~ai~~G~~~~GvTv 261 (325)
++++.-= ..+|..+.++..+.+.+=+.-| ||. ..+..|+.+|. ..|+-+
T Consensus 94 iv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~a-----RG~~vde~aL~~aL~~g~-i~ga~l 151 (178)
T PF02826_consen 94 IVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVA-----RGELVDEDALLDALESGK-IAGAAL 151 (178)
T ss_dssp EEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESS-----SGGGB-HHHHHHHHHTTS-EEEEEE
T ss_pred hhhhhhccccccceeeeeeeeeccccceEEEecc-----chhhhhhhHHHHHHhhcc-CceEEE
Confidence 9888743 5899999999998885555544 674 45677778774 444443
No 347
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=37.93 E-value=51 Score=30.48 Aligned_cols=16 Identities=19% Similarity=0.364 Sum_probs=14.2
Q ss_pred HHHHHHHCCCCEEEec
Q 020508 173 VIRFLERHGIPYHYLC 188 (325)
Q Consensus 173 ~~~~a~~~gIp~~~~~ 188 (325)
...+|++++||+..++
T Consensus 201 A~~l~~~~~i~i~Vfn 216 (238)
T COG0528 201 AFSLARDNGIPIIVFN 216 (238)
T ss_pred HHHHHHHcCCcEEEEe
Confidence 5788999999999887
No 348
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=37.91 E-value=2.9e+02 Score=27.48 Aligned_cols=74 Identities=9% Similarity=-0.030 Sum_probs=41.7
Q ss_pred eCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHH---HHHHHhcCCCEEEEec
Q 020508 136 SKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREE---ELLELVQNTDFLVLAR 212 (325)
Q Consensus 136 Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~---~~~~~l~~~Dliv~~g 212 (325)
.+.|.....++..+... ++.+.+=+.+..+ .=.+.|+..|+++...+......++ +..+.++++|.+|+++
T Consensus 273 ~~~~~~~~~~~~~L~~~--g~~v~~g~l~~~d----~d~~~a~~l~~~~~~~~pf~~i~~~~~~~a~~~~~~~~~vi~~~ 346 (402)
T PRK09536 273 VGGGQPAARAVSRLVAA--GASVSVGPVPEGD----TAAETAARVGCEAVTVPPFKPIEDSTRAEATDLIIAADAVVAAG 346 (402)
T ss_pred ECCCCcHHHHHHHHHHC--CCeEEEecCcCcc----hhHHHHHHcCCCEEeeCCCCCCCHHHHHHHHHHHHhCCEEEECC
Confidence 34444444455544333 3555544444421 2378899999999865522122222 3344445899999998
Q ss_pred ccc
Q 020508 213 YMQ 215 (325)
Q Consensus 213 ~~~ 215 (325)
+.-
T Consensus 347 ~~~ 349 (402)
T PRK09536 347 VAA 349 (402)
T ss_pred Ccc
Confidence 753
No 349
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=37.89 E-value=74 Score=26.69 Aligned_cols=78 Identities=13% Similarity=0.128 Sum_probs=41.6
Q ss_pred ceEEEEEeCCc--hHHHH-HHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEec-CCCChhHHHHHHHhcC
Q 020508 129 YKVAVLASKQE--HCLVD-FLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKENEREEELLELVQN 204 (325)
Q Consensus 129 ~ri~v~~Sg~g--~~l~~-Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~-~~~~~~~~~~~~~l~~ 204 (325)
+||.|+..|+- |.+.+ ++.... +.+.+.-.++......+.+....+.++++||+..... +.. . ++ .+..
T Consensus 3 ~~ILfVC~gN~cRSpmAEa~~~~~~-~~~~v~SaG~~~~~g~~~~~~a~~~l~~~Gid~~~h~s~~l--t-~~---~~~~ 75 (144)
T PRK11391 3 NSILVVCTGNICRSPIGERLLRKRL-PGVKVKSAGVHGLVKHPADATAADVAANHGVSLEGHAGRKL--T-AE---MARN 75 (144)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhc-CCeEEEcccccCCCCCCCCHHHHHHHHHcCCCcCCCccCcC--C-HH---HHhh
Confidence 57887777763 44544 554322 2222333343322222234567889999999974221 111 1 11 2337
Q ss_pred CCEEEEecc
Q 020508 205 TDFLVLARY 213 (325)
Q Consensus 205 ~Dliv~~g~ 213 (325)
+|+|++..-
T Consensus 76 ~DlIl~M~~ 84 (144)
T PRK11391 76 YDLILAMES 84 (144)
T ss_pred CCEEEECCH
Confidence 899999853
No 350
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=37.79 E-value=1e+02 Score=28.37 Aligned_cols=55 Identities=13% Similarity=0.042 Sum_probs=35.3
Q ss_pred ceEEEEEeCCc-h-HHHHHHHHhhcCCCCceEEEEEeCCCCCCC---chHHHHHHHCCCCEEEec
Q 020508 129 YKVAVLASKQE-H-CLVDFLYGWQEGKLPVEITCVISNHDRGPN---SHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 129 ~ri~v~~Sg~g-~-~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~---~~~~~~a~~~gIp~~~~~ 188 (325)
.|++|..||.- | .+..++... +.++.+|..+.+.... ..+.++|+++|||++.++
T Consensus 13 ~~vlVa~SGGvDSs~ll~la~~~-----g~~v~av~~~~~~~~~~e~~~a~~~a~~lgi~~~ii~ 72 (252)
T TIGR00268 13 KKVLIAYSGGVDSSLLAAVCSDA-----GTEVLAITVVSPSISPRELEDAIIIAKEIGVNHEFVK 72 (252)
T ss_pred CCEEEEecCcHHHHHHHHHHHHh-----CCCEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 58999999863 4 434444332 3467777665432111 346889999999998776
No 351
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=37.49 E-value=1e+02 Score=30.50 Aligned_cols=34 Identities=15% Similarity=0.141 Sum_probs=25.9
Q ss_pred CceEEEEEeCCCCCCCchHHHHHHHCCCCEEEec
Q 020508 155 PVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 155 ~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~ 188 (325)
+++|..--||+=...+.-+..++.+.|||++.+.
T Consensus 69 GAeV~~a~cNplSTqD~vaaAl~~~~GipVfA~k 102 (420)
T COG0499 69 GAEVRWASCNPLSTQDDVAAALAAKEGIPVFAWK 102 (420)
T ss_pred CceEEEecCCCCcccHHHHHHHhhccCceEEEEc
Confidence 6888888888754445556777788899999875
No 352
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=37.43 E-value=2e+02 Score=28.14 Aligned_cols=88 Identities=13% Similarity=0.155 Sum_probs=47.6
Q ss_pred CCceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCC
Q 020508 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (325)
Q Consensus 127 ~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 205 (325)
++.|++|++.|. |......+.+ ++++| .++ +++ ...+.+++..+|-++.. . . ...+++.+.+.++
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~-----lGa~V-~v~-d~~---~~~~~~l~~~~g~~v~~-~--~-~~~~~l~~~l~~a 231 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANG-----LGATV-TIL-DIN---IDRLRQLDAEFGGRIHT-R--Y-SNAYEIEDAVKRA 231 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHH-----CCCeE-EEE-ECC---HHHHHHHHHhcCceeEe-c--c-CCHHHHHHHHccC
Confidence 356788887663 3333333322 24553 333 332 12344455666665432 1 0 1224566667789
Q ss_pred CEEEEec------cccccChhHHhhcCCC
Q 020508 206 DFLVLAR------YMQILSGKFLRSYGKD 228 (325)
Q Consensus 206 Dliv~~g------~~~il~~~~l~~~~~~ 228 (325)
|+++.+- ...++.++.++..+.+
T Consensus 232 DvVI~a~~~~g~~~p~lit~~~l~~mk~g 260 (370)
T TIGR00518 232 DLLIGAVLIPGAKAPKLVSNSLVAQMKPG 260 (370)
T ss_pred CEEEEccccCCCCCCcCcCHHHHhcCCCC
Confidence 9999874 1456788888876644
No 353
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.43 E-value=2.4e+02 Score=27.09 Aligned_cols=75 Identities=12% Similarity=0.127 Sum_probs=45.9
Q ss_pred HHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCCEEEEe-ccccccCh
Q 020508 141 CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLA-RYMQILSG 219 (325)
Q Consensus 141 ~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dliv~~-g~~~il~~ 219 (325)
...+||+...- .+...-++|+-... .-+.|+..+..+.|..+..+.+.. ..+.+..+++|++|++ |...++.+
T Consensus 145 aii~lL~~~~i-~l~Gk~V~vIG~s~-ivG~PmA~~L~~~gatVtv~~~~t----~~l~e~~~~ADIVIsavg~~~~v~~ 218 (301)
T PRK14194 145 GCLRLLEDTCG-DLTGKHAVVIGRSN-IVGKPMAALLLQAHCSVTVVHSRS----TDAKALCRQADIVVAAVGRPRLIDA 218 (301)
T ss_pred HHHHHHHHhCC-CCCCCEEEEECCCC-ccHHHHHHHHHHCCCEEEEECCCC----CCHHHHHhcCCEEEEecCChhcccH
Confidence 34556665432 23333345554321 136788889999999998876221 1234445589998877 67777777
Q ss_pred hH
Q 020508 220 KF 221 (325)
Q Consensus 220 ~~ 221 (325)
+.
T Consensus 219 ~~ 220 (301)
T PRK14194 219 DW 220 (301)
T ss_pred hh
Confidence 65
No 354
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=37.39 E-value=68 Score=26.10 Aligned_cols=76 Identities=13% Similarity=0.122 Sum_probs=38.7
Q ss_pred ceEEEEEeCCc--hHHH-HHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCC
Q 020508 129 YKVAVLASKQE--HCLV-DFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (325)
Q Consensus 129 ~ri~v~~Sg~g--~~l~-~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 205 (325)
+||.|+..|+- |.+. .+++....+.+.+.-.++-. .+.+....+.++++||+......+ ... +. .++.+
T Consensus 1 ~~vlfvC~~N~cRS~mAEa~~~~~~~~~~~v~SAG~~~---~~~~p~a~~~l~e~Gid~~~~~s~-~l~-~~---~~~~~ 72 (126)
T TIGR02689 1 KKVMFVCKRNSCRSQMAEGFAKTLGAGNIAVTSAGLEV---SRVHPTAIEVMSEIGIDISGQTSK-PLE-NF---HPEDY 72 (126)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHhcCCCEEEEcCcCCC---CCCCHHHHHHHHHhCCCcccCccc-cCC-hh---HhcCC
Confidence 36777666653 4454 35555432222112223221 123456788889999997422211 111 11 12378
Q ss_pred CEEEEec
Q 020508 206 DFLVLAR 212 (325)
Q Consensus 206 Dliv~~g 212 (325)
|+||...
T Consensus 73 D~iitm~ 79 (126)
T TIGR02689 73 DVVISLC 79 (126)
T ss_pred CEEEEeC
Confidence 9999874
No 355
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=37.37 E-value=3.2e+02 Score=27.59 Aligned_cols=111 Identities=18% Similarity=0.182 Sum_probs=61.3
Q ss_pred CceEEEEEeCCchHHHHHHHHhh-cCCCCceEEEEEeCCCCC-------CC-chHHHHHHHCCCCEEEecC-CC-ChhHH
Q 020508 128 KYKVAVLASKQEHCLVDFLYGWQ-EGKLPVEITCVISNHDRG-------PN-SHVIRFLERHGIPYHYLCA-KE-NEREE 196 (325)
Q Consensus 128 ~~ri~v~~Sg~g~~l~~Ll~~~~-~~~l~~~I~~Vvt~~~~~-------~~-~~~~~~a~~~gIp~~~~~~-~~-~~~~~ 196 (325)
+.|++++++|. ..+.+.+.++ ++..+.++++++.+.+.. .+ ..+.+++++++|....+.- .. ...-.
T Consensus 143 ~rrVLIvGaG~--~g~~l~~~L~~~~~~g~~vVGfiDdd~~~g~~VpvlG~~~dL~~~v~~~~IdeViIAip~~~~~~l~ 220 (463)
T PRK10124 143 KRMVAVAGDLP--AGQMLLESFRNEPWLGFEVVGVYHDPKPGGVSNDWAGNLQQLVEDAKAGKIHNVYIAMSMCDGARVK 220 (463)
T ss_pred CCcEEEEECCH--HHHHHHHHHhcCccCCeEEEEEEeCCccccCCCCcCCCHHHHHHHHHhCCCCEEEEeCCCcchHHHH
Confidence 46788877664 3333444433 445678999988654211 01 2366788999999876651 11 11123
Q ss_pred HHHHHhc--CCCEEEEecccccc-ChhHHhhc-CCCEEEEcCCCCCCC
Q 020508 197 ELLELVQ--NTDFLVLARYMQIL-SGKFLRSY-GKDVINIHHGLLPSF 240 (325)
Q Consensus 197 ~~~~~l~--~~Dliv~~g~~~il-~~~~l~~~-~~~~iNiHpslLP~y 240 (325)
++++.++ .+++.++..+..+. ...-++.+ ....++++..++...
T Consensus 221 ell~~~~~~~v~V~ivP~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 268 (463)
T PRK10124 221 KLVRQLADTTCSVLLIPDVFTFNILHSRLEEMNGVPVVPLYDTPLSGI 268 (463)
T ss_pred HHHHHHHHcCCeEEEecchhhccccccchhhcCCeeEEEEeccccchH
Confidence 5555554 57777776654222 11112222 235788888876543
No 356
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=37.35 E-value=2.2e+02 Score=28.77 Aligned_cols=38 Identities=18% Similarity=0.170 Sum_probs=30.6
Q ss_pred cceEEEEEEcC---CCcchHHHHHHHHHhcCCeEeEeeeec
Q 020508 40 LTHGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFV 77 (325)
Q Consensus 40 ~~~~~ltv~g~---DrpGIVa~Vt~~La~~giNI~~l~~~~ 77 (325)
.....+++.|+ +++|..++|...|+++|+|+.-+.|..
T Consensus 305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~ 345 (447)
T COG0527 305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSI 345 (447)
T ss_pred CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEecc
Confidence 34556777776 356999999999999999999888854
No 357
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=37.26 E-value=1.1e+02 Score=28.24 Aligned_cols=43 Identities=19% Similarity=0.254 Sum_probs=26.2
Q ss_pred chHHHHHHHCCCCEEEecCCCChhH-HHHHHHh-cCCCEEEEeccc
Q 020508 171 SHVIRFLERHGIPYHYLCAKENERE-EELLELV-QNTDFLVLARYM 214 (325)
Q Consensus 171 ~~~~~~a~~~gIp~~~~~~~~~~~~-~~~~~~l-~~~Dliv~~g~~ 214 (325)
.+....|.++|+|+..-+...+..+ +++.+ . ++.-++++..|+
T Consensus 74 ~~~~~~al~~G~~vvigttG~s~~~~~~l~~-aa~~~~v~~s~n~s 118 (257)
T PRK00048 74 LENLEFALEHGKPLVIGTTGFTEEQLAELEE-AAKKIPVVIAPNFS 118 (257)
T ss_pred HHHHHHHHHcCCCEEEECCCCCHHHHHHHHH-HhcCCCEEEECcch
Confidence 4567889999999985543222222 22333 3 267788887775
No 358
>PRK11579 putative oxidoreductase; Provisional
Probab=37.21 E-value=1.5e+02 Score=28.37 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=19.9
Q ss_pred CCceEEEEEeCCc-hH-HHHHHHHhhcCCCCceEEEEEeC
Q 020508 127 PKYKVAVLASKQE-HC-LVDFLYGWQEGKLPVEITCVISN 164 (325)
Q Consensus 127 ~~~ri~v~~Sg~g-~~-l~~Ll~~~~~~~l~~~I~~Vvt~ 164 (325)
+++||+|++.|.- .. ....+.. .+ +.++++|+..
T Consensus 3 ~~irvgiiG~G~i~~~~~~~~~~~--~~--~~~l~av~d~ 38 (346)
T PRK11579 3 DKIRVGLIGYGYASKTFHAPLIAG--TP--GLELAAVSSS 38 (346)
T ss_pred CcceEEEECCCHHHHHHHHHHHhh--CC--CCEEEEEECC
Confidence 4689999998763 22 1222222 12 4788887653
No 359
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=36.79 E-value=1.8e+02 Score=24.86 Aligned_cols=99 Identities=13% Similarity=0.113 Sum_probs=59.0
Q ss_pred CCChHHHHHHHHhhhhhhcccceeeeecCCCCCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCC--CchH
Q 020508 96 KWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP--NSHV 173 (325)
Q Consensus 96 ~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~--~~~~ 173 (325)
..+++++.+.+.+.|+++|++ +.+|=|.....+-+.|..... +..++|-|+..-. ...+
T Consensus 25 ~~tl~~i~~~~~~~a~~~g~~--------------v~~~QSN~EGelId~I~~a~~-----~~dgiiINpga~THtSiAl 85 (146)
T PRK05395 25 STTLADIEALLEEEAAELGVE--------------LEFFQSNHEGELIDRIHEARD-----GADGIIINPGAYTHTSVAL 85 (146)
T ss_pred CCCHHHHHHHHHHHHHHcCCE--------------EEEEeeCcHHHHHHHHHhccc-----CCcEEEECchHHHHHHHHH
Confidence 457899999999988887654 667778765555554443221 3457888874221 2346
Q ss_pred HHHHHHCCCCEEEec-CCCChhHHHHHH--HhcCCCEEEEeccc
Q 020508 174 IRFLERHGIPYHYLC-AKENEREEELLE--LVQNTDFLVLARYM 214 (325)
Q Consensus 174 ~~~a~~~gIp~~~~~-~~~~~~~~~~~~--~l~~~Dliv~~g~~ 214 (325)
.+..+..++|+..+- +....+| ++.. .+...=..+++||+
T Consensus 86 ~DAl~~~~~P~VEVHiSNi~aRE-~fR~~S~is~~a~G~I~G~G 128 (146)
T PRK05395 86 RDALAAVSIPVIEVHLSNIHARE-EFRHHSYISDVAVGVICGFG 128 (146)
T ss_pred HHHHHcCCCCEEEEecCCccccc-cccccccccccceEEEeeCC
Confidence 777788999998765 3322232 2211 12233455666664
No 360
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=36.77 E-value=2.8e+02 Score=25.94 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=22.6
Q ss_pred ceEEEEEeCCCCC-CCchHHHHHHHCCCCEEEec
Q 020508 156 VEITCVISNHDRG-PNSHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 156 ~~I~~Vvt~~~~~-~~~~~~~~a~~~gIp~~~~~ 188 (325)
-+.+.|++.+... .+....+..++.|||+..+.
T Consensus 61 pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~ 94 (277)
T PRK00994 61 PDFVIVISPNPAAPGPKKAREILKAAGIPCIVIG 94 (277)
T ss_pred CCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEc
Confidence 3455566655332 24557888899999998887
No 361
>PRK09977 putative Mg(2+) transport ATPase; Provisional
Probab=36.72 E-value=2.4e+02 Score=25.67 Aligned_cols=62 Identities=6% Similarity=-0.061 Sum_probs=41.8
Q ss_pred eEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHh
Q 020508 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (325)
Q Consensus 42 ~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~ 108 (325)
++.+++.+.+. -+.++.+.+.++++.+.+++........ .+.+++.++. ..+..++-+.|..
T Consensus 144 ~~~~~i~~~~~--~~~~i~~~l~~~~i~i~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~l~~~L~~ 205 (215)
T PRK09977 144 HYHLQLTLVNG--NVVSMLDWFKQQKIKTDLVSLQENEDHE--VVAIDITLHA-TTSIEDLYRLLKG 205 (215)
T ss_pred cEEEEEEEccc--cHHHHHHHHHHcCceEEEEEEEecCCCc--EEEEEEEECC-CCCHHHHHHHHhc
Confidence 35566666544 3688999999999999999875322222 3667788886 5666666555544
No 362
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=36.66 E-value=1.8e+02 Score=25.66 Aligned_cols=102 Identities=15% Similarity=0.116 Sum_probs=48.8
Q ss_pred HHHhhhhhhcccceeeeecCCCCCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeC--CCCCCCchHHHHHHHCCC
Q 020508 105 DFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN--HDRGPNSHVIRFLERHGI 182 (325)
Q Consensus 105 ~l~~l~~~l~~~~~~~~~~~~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~--~~~~~~~~~~~~a~~~gI 182 (325)
..+..|+.+|+....+.++...+. .-..+...+...+.. +.+ +|++- -.+.......+.|++.|+
T Consensus 49 ~~~~~A~~lgipl~~i~~~~~~e~---------~~~~l~~~l~~~~~~--g~~--~vv~G~i~sd~~~~~~e~~~~~~gl 115 (194)
T cd01994 49 LLELQAEAMGIPLIRIEISGEEED---------EVEDLKELLRKLKEE--GVD--AVVFGAILSEYQRTRVERVCERLGL 115 (194)
T ss_pred HHHHHHHHcCCcEEEEeCCCCchH---------HHHHHHHHHHHHHHc--CCC--EEEECccccHHHHHHHHHHHHHcCC
Confidence 445677788876433332211110 114555555554432 233 33332 111112457889999999
Q ss_pred CEEEecCCCChhHHHHHHH-hc-CCCEEEEeccccccChhH
Q 020508 183 PYHYLCAKENEREEELLEL-VQ-NTDFLVLARYMQILSGKF 221 (325)
Q Consensus 183 p~~~~~~~~~~~~~~~~~~-l~-~~Dliv~~g~~~il~~~~ 221 (325)
..+ .| ....+.+++++. +. ..+.+++.--..-|++++
T Consensus 116 ~~~-~P-LW~~~~~~ll~e~~~~g~~~~iv~v~~~~L~~~~ 154 (194)
T cd01994 116 EPL-AP-LWGRDQEELLREMIEAGFKAIIIKVAAEGLDESW 154 (194)
T ss_pred EEE-ec-ccCCCHHHHHHHHHHcCCeEEEEEeccCCCCHHH
Confidence 886 45 222222344444 34 677655443333344443
No 363
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=36.60 E-value=1.5e+02 Score=23.17 Aligned_cols=60 Identities=7% Similarity=0.125 Sum_probs=39.9
Q ss_pred CcchHHHHHHHHHhcCCeEeEeeeecc---------CCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcccceeee
Q 020508 52 EVGIVAKLSECIASRGGNILAADVFVP---------EKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVR 121 (325)
Q Consensus 52 rpGIVa~Vt~~La~~giNI~~l~~~~~---------~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~~~~~ 121 (325)
...++.++.+.|.+.|+.|.+.+.-+. ...|.| ..+.+..++ ....+|+. .|.+++..+|
T Consensus 23 ~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Y-v~~~f~~~~--~~i~eler-------~lri~e~VlR 91 (97)
T CHL00123 23 LLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIY-IQMNYSGNG--KLVNSLEK-------ALKLDENVLR 91 (97)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEE-EEEEEEECH--HHHHHHHH-------HhCCCCCeEE
Confidence 667899999999999999999887642 233544 466776665 23444444 4455655555
No 364
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=36.52 E-value=87 Score=25.81 Aligned_cols=33 Identities=15% Similarity=0.349 Sum_probs=24.0
Q ss_pred ceEEEEEeCCCCCCCchHHHHHHHCCCCEEEec
Q 020508 156 VEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 156 ~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~ 188 (325)
..|..+.|-..+.....+.+.|+++|+|+..++
T Consensus 35 ~si~~lasi~~K~~E~~L~~~A~~lg~pl~~~~ 67 (126)
T PRK07027 35 ADVRVVATLDLKADEAGLLALCARHGWPLRAFS 67 (126)
T ss_pred HHhheeEehhhhcCCHHHHHHHHHhCCCeEEeC
Confidence 456666664433335679999999999999886
No 365
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.36 E-value=3.2e+02 Score=26.00 Aligned_cols=76 Identities=16% Similarity=0.174 Sum_probs=44.3
Q ss_pred HHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCCEEEEe-ccccccChh
Q 020508 142 LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLA-RYMQILSGK 220 (325)
Q Consensus 142 l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dliv~~-g~~~il~~~ 220 (325)
..+||+...-+ +...-+.|+- +...-+.|+..+..+.|.-+....+. ...+.+.++++|++|++ |-..+++++
T Consensus 145 ii~lL~~~~i~-l~Gk~vvViG-rs~iVGkPla~lL~~~~atVt~~hs~----t~~l~~~~~~ADIVV~avG~~~~i~~~ 218 (285)
T PRK14189 145 VMKMLESIGIP-LRGAHAVVIG-RSNIVGKPMAMLLLQAGATVTICHSK----TRDLAAHTRQADIVVAAVGKRNVLTAD 218 (285)
T ss_pred HHHHHHHcCCC-CCCCEEEEEC-CCCccHHHHHHHHHHCCCEEEEecCC----CCCHHHHhhhCCEEEEcCCCcCccCHH
Confidence 34466554321 2223344444 33223678888888888877654421 22355666789998887 667778876
Q ss_pred HHh
Q 020508 221 FLR 223 (325)
Q Consensus 221 ~l~ 223 (325)
.+.
T Consensus 219 ~ik 221 (285)
T PRK14189 219 MVK 221 (285)
T ss_pred HcC
Confidence 553
No 366
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=36.21 E-value=2.3e+02 Score=26.93 Aligned_cols=71 Identities=18% Similarity=0.308 Sum_probs=36.6
Q ss_pred EEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCCEEEE
Q 020508 132 AVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVL 210 (325)
Q Consensus 132 ~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dliv~ 210 (325)
.||.-+. ++.+..|..+.+.|. +++|..+=| ++...+........+.|||+..++. ..+...+.++|.+++
T Consensus 118 ~ILT~~~S~tv~~~l~~a~~~~~-~f~V~v~Es-rP~~~G~~~a~~L~~~gI~vtlI~D------sa~~~~m~~vd~Viv 189 (301)
T TIGR00511 118 VVMTHCNSEAALSVIKTAFEQGK-DIEVIATET-RPRKQGHITAKELRDYGIPVTLIVD------SAVRYFMKEVDHVVV 189 (301)
T ss_pred EEEEECCcHHHHHHHHHHHHcCC-cEEEEEecC-CCcchHHHHHHHHHHCCCCEEEEeh------hHHHHHHHhCCEEEE
Confidence 3555443 455455555555544 355432222 2222233455666778999998761 123333446676665
No 367
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=36.04 E-value=1e+02 Score=27.05 Aligned_cols=123 Identities=12% Similarity=0.146 Sum_probs=70.1
Q ss_pred hhhhccccceeeeeecccccCCccccccCCCCCCCCcceEEEEEEcCCC----cchHHHHHHHHHhcCCeEeEeeeeccC
Q 020508 4 LRRLSSSLQQVVKFTNRSFKSLKFPGEPIESSVSPTLTHGIHVFHCPDE----VGIVAKLSECIASRGGNILAADVFVPE 79 (325)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ltv~g~Dr----pGIVa~Vt~~La~~giNI~~l~~~~~~ 79 (325)
|++|+..+.. ......+|+++-+++.+- +....--.+-.+.++|.-. .--+.++.+.|.+.|+.......
T Consensus 19 L~~la~~~~n-~eY~P~~fpgli~Rl~~P-k~t~lIF~SGKiv~tGaks~~~a~~a~~~~~~~L~~~g~~~~~~~~---- 92 (174)
T cd04518 19 LEKVAAELPN-AEYNPDQFPGLVYRLEDP-KIAALIFRSGKMVCTGAKSVEDLHRAVKEIIKKLKDYGIKVIEKPE---- 92 (174)
T ss_pred HHHHHhhCCC-cEECCCcCcEEEEEccCC-cEEEEEECCCeEEEEccCCHHHHHHHHHHHHHHHHhcCCCccCCCc----
Confidence 5666666544 455556777777777542 1111111223556677733 34467888889998877531111
Q ss_pred CCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhccc---ceeeeecCCCCCceEEEEEeCC
Q 020508 80 KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM---RSVVRVPDIDPKYKVAVLASKQ 138 (325)
Q Consensus 80 ~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~---~~~~~~~~~~~~~ri~v~~Sg~ 138 (325)
=..-.+...++++- +.+++.+...+.. .+++.+ -.++|+.+ ++..+.+|.||.
T Consensus 93 -~~i~NIVas~~l~~-~i~L~~la~~~~~--~~YePe~fpglvyR~~~--pk~~~lIF~SGK 148 (174)
T cd04518 93 -IKVQNIVASADLGR-EVNLDAIAIGLPN--AEYEPEQFPGLVYRLDE--PKVVLLLFSSGK 148 (174)
T ss_pred -eEEEEEEEEEEcCC-ccCHHHHHhhCCC--CccCcccCceEEEEecC--CcEEEEEeCCCE
Confidence 01233456666776 7888888766552 333333 12345554 678888888886
No 368
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.03 E-value=2.8e+02 Score=26.37 Aligned_cols=86 Identities=13% Similarity=0.190 Sum_probs=50.9
Q ss_pred HHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCCEEEEe-ccccccChh
Q 020508 142 LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLA-RYMQILSGK 220 (325)
Q Consensus 142 l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dliv~~-g~~~il~~~ 220 (325)
..+||+...- .+...-+.|+ .+...-+.|+..+..+.|--+....++ ...+.+..+++|++|++ |-..+++++
T Consensus 146 vi~ll~~y~i-~l~Gk~vvVi-GrS~iVGkPla~lL~~~~atVt~chs~----T~~l~~~~~~ADIvIsAvGk~~~i~~~ 219 (284)
T PRK14177 146 MVLLLKEYGI-DVTGKNAVVV-GRSPILGKPMAMLLTEMNATVTLCHSK----TQNLPSIVRQADIIVGAVGKPEFIKAD 219 (284)
T ss_pred HHHHHHHhCC-CCCCCEEEEE-CCCCcchHHHHHHHHHCCCEEEEeCCC----CCCHHHHHhhCCEEEEeCCCcCccCHH
Confidence 3446665422 2223334444 444334778888888888777655422 12344556689998887 788889988
Q ss_pred HHhhcCCCEEEEcCCC
Q 020508 221 FLRSYGKDVINIHHGL 236 (325)
Q Consensus 221 ~l~~~~~~~iNiHpsl 236 (325)
.+. .|.+-+--|.
T Consensus 220 ~ik---~gavVIDvGi 232 (284)
T PRK14177 220 WIS---EGAVLLDAGY 232 (284)
T ss_pred HcC---CCCEEEEecC
Confidence 764 3444444443
No 369
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.99 E-value=1.9e+02 Score=21.80 Aligned_cols=63 Identities=13% Similarity=0.054 Sum_probs=40.9
Q ss_pred EEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhh
Q 020508 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (325)
Q Consensus 43 ~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l 109 (325)
..+.|.=|+|||-..+.-+.| .-+.||++.+=.-.. +..=.+-+-++++. . +.+++.+.|++.
T Consensus 2 ~~~~v~iPErpGal~~Fl~~l-~p~~~ITeF~YR~~~-~~~a~vlvGi~~~~-~-~~~~l~~~l~~~ 64 (81)
T cd04907 2 RLFRFEFPERPGALKKFLNEL-LPKWNITLFHYRNQG-SDYGRVLVGIQVPD-A-DLDELKERLDAL 64 (81)
T ss_pred eEEEEEcCCCCCHHHHHHHHh-CCCCeEeEEEEecCC-CCceeEEEEEEeCh-H-HHHHHHHHHHHc
Confidence 356777899999999999888 337899998875321 11111112344554 3 667777777764
No 370
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=35.79 E-value=2.7e+02 Score=27.24 Aligned_cols=132 Identities=17% Similarity=0.159 Sum_probs=75.5
Q ss_pred hHHHHHHHHhhcCCCCceEEEEEeCCCCCC-CchHHHHHHHCCCCEEEecCCCChhHHHHHHHhc-----CCCEEEEecc
Q 020508 140 HCLVDFLYGWQEGKLPVEITCVISNHDRGP-NSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-----NTDFLVLARY 213 (325)
Q Consensus 140 ~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~-~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~-----~~Dliv~~g~ 213 (325)
+.+..|-.++++. +..|+.+-++.=+.. -..+..|+++.|+|+.... .......-..+.++ +.|++++---
T Consensus 154 TTIaKLA~~l~~~--g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~-~G~DpAaVafDAi~~Akar~~DvvliDTA 230 (340)
T COG0552 154 TTIAKLAKYLKQQ--GKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGK-EGADPAAVAFDAIQAAKARGIDVVLIDTA 230 (340)
T ss_pred hHHHHHHHHHHHC--CCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccC-CCCCcHHHHHHHHHHHHHcCCCEEEEeCc
Confidence 6777777766554 356665555432111 1357889999999998543 21111122233332 7999998777
Q ss_pred ccccChhHH-h---hcCCCEEEEc------CCCC--CCCCCCcHHHHH--HHhCCcEeEEEEEEecCCCCCCCeEE
Q 020508 214 MQILSGKFL-R---SYGKDVINIH------HGLL--PSFKGGKPAKQA--FDAGVKLIGATSHFVTEELDAGPIIE 275 (325)
Q Consensus 214 ~~il~~~~l-~---~~~~~~iNiH------pslL--P~yRG~~pi~~a--i~~G~~~~GvTvh~v~~~~D~G~Ii~ 275 (325)
+|+=.+.=| + +.. ++++=+ -.+| -.--|-+.+.+| +.+-...+|+-+=++|...-.|-|+.
T Consensus 231 GRLhnk~nLM~EL~KI~-rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~l~GiIlTKlDgtAKGG~il~ 305 (340)
T COG0552 231 GRLHNKKNLMDELKKIV-RVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVGLDGIILTKLDGTAKGGIILS 305 (340)
T ss_pred ccccCchhHHHHHHHHH-HHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcCCceEEEEecccCCCcceeee
Confidence 766443221 1 110 111111 1222 244799999988 44556789999999996655555444
No 371
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=35.68 E-value=2.9e+02 Score=27.51 Aligned_cols=129 Identities=15% Similarity=0.187 Sum_probs=69.8
Q ss_pred ceEEEEEeC-C-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhc--C
Q 020508 129 YKVAVLASK-Q-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--N 204 (325)
Q Consensus 129 ~ri~v~~Sg-~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~--~ 204 (325)
+||++|+|- + |+..-+++.+..+ .++|+++.++++ -.-+.+.|++++-.+..+... ....++-+.+. +
T Consensus 2 k~i~IlGsTGSIG~qtL~Vi~~~~~---~f~v~~Laa~~n---~~~L~~q~~~f~p~~v~i~d~--~~~~~l~~~l~~~~ 73 (389)
T TIGR00243 2 KQIVILGSTGSIGKSTLDVVRHNPD---HFQVVALSAGKN---VALMVEQILEFRPKFVAIDDE--ASLKDLKTMLQQQG 73 (389)
T ss_pred ceEEEEecChHHHHHHHHHHHhCcc---ccEEEEEEcCCC---HHHHHHHHHHcCCCEEEEcCH--HHHHHHHHHhhcCC
Confidence 689999974 3 5555556654332 489998887653 245788899999877666411 11122222222 1
Q ss_pred CCEEEEeccccccChhHHhhcC-CCEEEEcCCCCCCCCCCcHHHHHHHhCCcEeEEEEEEecCC--CCCCCeEEE
Q 020508 205 TDFLVLARYMQILSGKFLRSYG-KDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEE--LDAGPIIEQ 276 (325)
Q Consensus 205 ~Dliv~~g~~~il~~~~l~~~~-~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvh~v~~~--~D~G~Ii~Q 276 (325)
.+.-++.|---++ ++.+... .-++|- +--+.|..|...|+..|. ++=..+.+ +=.|+++.+
T Consensus 74 ~~~~v~~G~~~l~--~l~~~~~~D~vv~A----ivG~aGL~pt~~Ai~~gk-----~iaLANKEsLV~aG~li~~ 137 (389)
T TIGR00243 74 SRTEVLVGEEGIC--EMAALEDVDQVMNA----IVGAAGLLPTLAAIRAGK-----TIALANKESLVTAGHLFLD 137 (389)
T ss_pred CCcEEEECHHHHH--HHHcCCCCCEEEEh----hhcHhhHHHHHHHHHCCC-----cEEEechhHHHhhHHHHHH
Confidence 1222333322111 1222121 113332 233478888889998874 34455554 677777653
No 372
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=35.50 E-value=2.4e+02 Score=28.26 Aligned_cols=98 Identities=14% Similarity=0.203 Sum_probs=50.7
Q ss_pred hHHHHHHHCCCCEEEecCCCChhHHHHHHHhc---CCCEEEEeccccccCh-----hHHhhcC-C-CEEEEcCCCCCCCC
Q 020508 172 HVIRFLERHGIPYHYLCAKENEREEELLELVQ---NTDFLVLARYMQILSG-----KFLRSYG-K-DVINIHHGLLPSFK 241 (325)
Q Consensus 172 ~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~---~~Dliv~~g~~~il~~-----~~l~~~~-~-~~iNiHpslLP~yR 241 (325)
.+..+|+..|+|+..... ..++...++ ++|++++=.-++.=.+ .+.+... . .-+..| =.||...
T Consensus 269 qL~~~a~~~~vp~~~~~~-----~~~l~~~l~~~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~-LVl~a~~ 342 (424)
T PRK05703 269 QLKTYAKIMGIPVEVVYD-----PKELAKALEQLRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVY-LVLSATT 342 (424)
T ss_pred HHHHHHHHhCCceEccCC-----HHhHHHHHHHhCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEE-EEEECCC
Confidence 367789999999975431 123444443 7899998844332111 1212112 0 001111 2356666
Q ss_pred CCcHHHHHHHh--CCcEeEEEEEEecCCCCCCCeEE
Q 020508 242 GGKPAKQAFDA--GVKLIGATSHFVTEELDAGPIIE 275 (325)
Q Consensus 242 G~~pi~~ai~~--G~~~~GvTvh~v~~~~D~G~Ii~ 275 (325)
+..-+..++.. .....|+=+=++|+.---|.|+.
T Consensus 343 ~~~~l~~~~~~f~~~~~~~vI~TKlDet~~~G~i~~ 378 (424)
T PRK05703 343 KYEDLKDIYKHFSRLPLDGLIFTKLDETSSLGSILS 378 (424)
T ss_pred CHHHHHHHHHHhCCCCCCEEEEecccccccccHHHH
Confidence 65555444332 33445666666777655566543
No 373
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=35.33 E-value=1.5e+02 Score=23.86 Aligned_cols=58 Identities=14% Similarity=0.150 Sum_probs=32.4
Q ss_pred EEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCC--CchHHHHHHHCCCCEEEecCCCChhHHHHHHHhc
Q 020508 134 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP--NSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 203 (325)
Q Consensus 134 ~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~--~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 203 (325)
+++|...++.+| +.+ ++..|+...+-+. ...+..+|+.++||++.+. .+..|+-..+.
T Consensus 26 lv~G~~~vlkal----k~g----kaklViiA~D~~~~~kkki~~~~~~~~Vpv~~~~----~t~~eLG~A~G 85 (108)
T PTZ00106 26 YTLGTKSTLKAL----RNG----KAKLVIISNNCPPIRRSEIEYYAMLSKTGVHHYA----GNNNDLGTACG 85 (108)
T ss_pred eeecHHHHHHHH----HcC----CeeEEEEeCCCCHHHHHHHHHHHhhcCCCEEEeC----CCHHHHHHHhC
Confidence 556655555554 333 2344444343222 2457889999999998653 01245666664
No 374
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=35.18 E-value=2.6e+02 Score=28.36 Aligned_cols=198 Identities=11% Similarity=-0.003 Sum_probs=102.3
Q ss_pred eEEEEEEc-CCCcchHHHHHHHHHhcCCeEeE-eeee--cc---C-CCCeEEEEE--------------EEEeCC---CC
Q 020508 42 HGIHVFHC-PDEVGIVAKLSECIASRGGNILA-ADVF--VP---E-KKNVFYSRS--------------EFIFDP---IK 96 (325)
Q Consensus 42 ~~~ltv~g-~DrpGIVa~Vt~~La~~giNI~~-l~~~--~~---~-~~g~F~~~~--------------~v~~p~---~~ 96 (325)
+..+.+.| ..-+|=+.++-+.|.+.|+++.- ++.. .+ . ....+.+.+ .+.+|- ..
T Consensus 207 ~~~VNiiG~~~~~gd~~eik~lL~~~Gi~v~~~~sg~~t~~~i~~~~~A~lniv~~~~~~~~~A~~Le~~fGiP~~~~~~ 286 (466)
T TIGR01282 207 PYDVAIIGDYNIGGDAWESRILLEEIGLRVVAQWSGDGTLNEMENAPKAKLNLIHCYRSMNYISRHMEEKYGIPWMEYNF 286 (466)
T ss_pred CCeEEEEecCCCcccHHHHHHHHHHcCCeEEEEECCCCCHHHHHhcccCCEEEEEChHHHHHHHHHHHHHhCCceEeCCC
Confidence 45666666 34578889999999999999874 2211 10 0 011222111 011221 02
Q ss_pred CChHHHHHHHHhhhhhhcccc--ee-----------e----eecCCCCCceEEEEEeCC-chHHHHHHHHhhcCCCCceE
Q 020508 97 WPREQMDEDFFKLSKMFNAMR--SV-----------V----RVPDIDPKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEI 158 (325)
Q Consensus 97 ~~~~~L~~~l~~l~~~l~~~~--~~-----------~----~~~~~~~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I 158 (325)
...+.-.+.|..+++-+|.+. .. + +....-..+|+++++.+. ...+..++ + +++.++
T Consensus 287 ~Gi~~T~~~Lr~ia~~~g~~i~~~~e~~I~~e~~~~~~~ld~~~~~L~GKrv~i~~g~~~~~~~~~~l---~--ELGmev 361 (466)
T TIGR01282 287 FGPTKIAESLRKIAEFFDDEIKEKAEEVIAKYQPAVDAVIAKYRPRLEGKTVMLYVGGLRPRHVIGAF---E--DLGMEV 361 (466)
T ss_pred CCHHHHHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHH---H--HCCCEE
Confidence 345666666777777666320 00 0 011111246888876442 22333332 2 467888
Q ss_pred EEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhc--CCCEEEEeccccccChhHHhhcCCCEEEEcCCC
Q 020508 159 TCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVLARYMQILSGKFLRSYGKDVINIHHGL 236 (325)
Q Consensus 159 ~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~--~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpsl 236 (325)
+++-+.-. ......+..+..+=-...++ +.+..++.+.++ +||+++.-+..+.+-.+ ....++.+|..-
T Consensus 362 v~~g~~~~--~~~~~~~~~~~~~~~~~i~~---~~d~~el~~~i~~~~pDl~ig~~~~~~~a~k----~gIP~~~~~~~~ 432 (466)
T TIGR01282 362 IGTGYEFA--HNDDYERTTKYMKDGTLIYD---DVTHYEFEEFVEKLKPDLVGSGIKEKYVFQK----MGVPFRQMHSWD 432 (466)
T ss_pred EEEeeecC--CHHHHHHHHHhcCCCeEEee---CCCHHHHHHHHHHhCCCEEEecCCccceeee----cCCCcccccccc
Confidence 75544211 01122333333222223333 123346777775 89999998887766543 455577777665
Q ss_pred C--C--CCCCCcHHHHHHHhC
Q 020508 237 L--P--SFKGGKPAKQAFDAG 253 (325)
Q Consensus 237 L--P--~yRG~~pi~~ai~~G 253 (325)
+ | -|+|.--+...|.+.
T Consensus 433 ~~~~~~Gy~G~~~l~~~i~~~ 453 (466)
T TIGR01282 433 YSGPYHGYDGFAIFARDMDMA 453 (466)
T ss_pred ccCcchhHhHHHHHHHHHHHH
Confidence 5 5 578876665555543
No 375
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=34.97 E-value=2.2e+02 Score=26.63 Aligned_cols=114 Identities=11% Similarity=0.076 Sum_probs=59.9
Q ss_pred CChHHHH-HHHHhhhhhhcccceeeeecCCCCCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHH
Q 020508 97 WPREQMD-EDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIR 175 (325)
Q Consensus 97 ~~~~~L~-~~l~~l~~~l~~~~~~~~~~~~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~ 175 (325)
.++++-+ ..++.+++.+++. +-.||.=+++|.|..+..+.+.. ++.|.+|-..+. .-..+.+
T Consensus 41 ~~Le~AQ~~k~~~~~~~~~l~----------~G~~vLDiGcGwG~~~~~~a~~~-----g~~v~gitlS~~--Q~~~a~~ 103 (273)
T PF02353_consen 41 DTLEEAQERKLDLLCEKLGLK----------PGDRVLDIGCGWGGLAIYAAERY-----GCHVTGITLSEE--QAEYARE 103 (273)
T ss_dssp --HHHHHHHHHHHHHTTTT------------TT-EEEEES-TTSHHHHHHHHHH-------EEEEEES-HH--HHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhCCC----------CCCEEEEeCCCccHHHHHHHHHc-----CcEEEEEECCHH--HHHHHHH
Confidence 3444433 3366678888776 35799999999999887776653 356666533322 1244677
Q ss_pred HHHHCCCC--EEEecCCCChhHHHHHHHhc-CCCEEEEeccccccChh----HHhhc-----CCCEEEEcCC
Q 020508 176 FLERHGIP--YHYLCAKENEREEELLELVQ-NTDFLVLARYMQILSGK----FLRSY-----GKDVINIHHG 235 (325)
Q Consensus 176 ~a~~~gIp--~~~~~~~~~~~~~~~~~~l~-~~Dliv~~g~~~il~~~----~l~~~-----~~~~iNiHps 235 (325)
.+++.|++ +...-.+. + + +. ..|-|++++-..=++.+ +++.. ++|.+-+|-.
T Consensus 104 ~~~~~gl~~~v~v~~~D~--~--~----~~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i 167 (273)
T PF02353_consen 104 RIREAGLEDRVEVRLQDY--R--D----LPGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTI 167 (273)
T ss_dssp HHHCSTSSSTEEEEES-G--G--G-------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEE
T ss_pred HHHhcCCCCceEEEEeec--c--c----cCCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEec
Confidence 78889976 22111111 1 1 11 78999998765555432 23321 5666666643
No 376
>PRK09084 aspartate kinase III; Validated
Probab=34.90 E-value=1.9e+02 Score=29.17 Aligned_cols=34 Identities=12% Similarity=0.132 Sum_probs=29.4
Q ss_pred eEEEEEEcC---CCcchHHHHHHHHHhcCCeEeEeee
Q 020508 42 HGIHVFHCP---DEVGIVAKLSECIASRGGNILAADV 75 (325)
Q Consensus 42 ~~~ltv~g~---DrpGIVa~Vt~~La~~giNI~~l~~ 75 (325)
-..+++.|. +.+|+.+++-+.|+++|+||.-+.+
T Consensus 306 i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~s 342 (448)
T PRK09084 306 QTLLTLHSLNMLHARGFLAEVFGILARHKISVDLITT 342 (448)
T ss_pred EEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEec
Confidence 446788765 6899999999999999999998876
No 377
>PRK14430 acylphosphatase; Provisional
Probab=34.30 E-value=1.5e+02 Score=23.00 Aligned_cols=59 Identities=17% Similarity=0.016 Sum_probs=43.7
Q ss_pred HHHHHHhhhhhhcccceeeeecCCCCCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeC
Q 020508 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (325)
Q Consensus 102 L~~~l~~l~~~l~~~~~~~~~~~~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~ 164 (325)
+|.-...+|.++|+.-|..-.++ -+|-+++.|....+..+++.++.+...++|.-|-..
T Consensus 19 FR~~~~~~A~~lgl~G~VrN~~d----GsVei~~qG~~~~i~~f~~~l~~gp~~a~V~~v~~~ 77 (92)
T PRK14430 19 YRAACADAADDLGLGGWVRNRAD----GTVEVMASGTVRQLEALRAWMEAGPPAAQVTKVEVG 77 (92)
T ss_pred eHHHHHHHHHHhCCEEEEEECCC----CcEEEEEEcCHHHHHHHHHHHHhCCCceEEEEEEEE
Confidence 67777788999999987433332 368888899999999999988776545777766443
No 378
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.14 E-value=2.9e+02 Score=26.14 Aligned_cols=164 Identities=11% Similarity=0.091 Sum_probs=83.4
Q ss_pred eEEEEEEcCCCcchHHH--HHHHHHhcCCeEeEeee--ec---------c---CCCCeEEEEEEEEeCCCCCChHHHHHH
Q 020508 42 HGIHVFHCPDEVGIVAK--LSECIASRGGNILAADV--FV---------P---EKKNVFYSRSEFIFDPIKWPREQMDED 105 (325)
Q Consensus 42 ~~~ltv~g~DrpGIVa~--Vt~~La~~giNI~~l~~--~~---------~---~~~g~F~~~~~v~~p~~~~~~~~L~~~ 105 (325)
++.+...|.|.--.++. -.+...+.|++.....- .+ . .....--+.+..=+|+ +.+...+.++
T Consensus 34 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~d~~V~GIlvqlPLP~-~~~~~~i~~~ 112 (278)
T PRK14172 34 KIASILVGNDGGSIYYMNNQEKVANSLGIDFKKIKLDESISEEDLINEIEELNKDNNVHGIMLQLPLPK-HLDEKKITNK 112 (278)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCC-CCCHHHHHhc
Confidence 56666677766554443 55677888887764321 11 0 1111222233333444 4444444443
Q ss_pred HHhhhhhhcccceeeeecCCCCCceEEEEEeCC-------chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHH
Q 020508 106 FFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQ-------EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLE 178 (325)
Q Consensus 106 l~~l~~~l~~~~~~~~~~~~~~~~ri~v~~Sg~-------g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~ 178 (325)
+.. +-++|-. . +.+.+-+..|. .....+||+...- .+...-+.|+ .+...-+.|+..+..
T Consensus 113 I~p---~KDVDGl----~----~~n~g~l~~g~~~~~PcTp~av~~lL~~~~i-~l~Gk~vvVi-GrS~~VGkPla~lL~ 179 (278)
T PRK14172 113 IDA---NKDIDCL----T----FISVGKFYKGEKCFLPCTPNSVITLIKSLNI-DIEGKEVVVI-GRSNIVGKPVAQLLL 179 (278)
T ss_pred cCc---ccccCcc----C----HhhHHHHhCCCCCCcCCCHHHHHHHHHHhCC-CCCCCEEEEE-CCCccchHHHHHHHH
Confidence 333 3333321 1 12222222221 2234556665432 1222334445 444334678888888
Q ss_pred HCCCCEEEecCCCChhHHHHHHHhcCCCEEEEe-ccccccChhHHh
Q 020508 179 RHGIPYHYLCAKENEREEELLELVQNTDFLVLA-RYMQILSGKFLR 223 (325)
Q Consensus 179 ~~gIp~~~~~~~~~~~~~~~~~~l~~~Dliv~~-g~~~il~~~~l~ 223 (325)
+.|.-+....++ ...+.+..+++|++|++ |-..+++++.+.
T Consensus 180 ~~~AtVt~chs~----T~~l~~~~~~ADIvIsAvGkp~~i~~~~ik 221 (278)
T PRK14172 180 NENATVTICHSK----TKNLKEVCKKADILVVAIGRPKFIDEEYVK 221 (278)
T ss_pred HCCCEEEEeCCC----CCCHHHHHhhCCEEEEcCCCcCccCHHHcC
Confidence 888777655422 12344555689998887 788889988764
No 379
>TIGR01269 Tyr_3_monoox tyrosine 3-monooxygenase, tetrameric. This model describes tyrosine 3-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tryptophan 5-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=33.78 E-value=2.1e+02 Score=29.02 Aligned_cols=65 Identities=5% Similarity=-0.025 Sum_probs=44.5
Q ss_pred ceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccC-CC---CeEEEEEEEEeCCCCCChHHHHHHHHh
Q 020508 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KK---NVFYSRSEFIFDPIKWPREQMDEDFFK 108 (325)
Q Consensus 41 ~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~-~~---g~F~~~~~v~~p~~~~~~~~L~~~l~~ 108 (325)
....+++...+ +|-.+++=+.+.++++||.++.+.-.. .. ..|..-+.++.+. .+..++-+.|..
T Consensus 38 ~~~~~~~~~~~-~g~L~~~l~~f~~~~inl~hiEsr~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~l~~ 106 (457)
T TIGR01269 38 QNNQFYIRTKE-ISSLHRILKYIETFKLNLVHFETRPTRTLSNADVDYSCLITLEANE--INMSLLIESLRG 106 (457)
T ss_pred eeEEEEeccCc-chhHHHHHHHHHHcCCcEEEeecCCccccCCCCCceEEEEEEeccH--hhHHHHHHHHHh
Confidence 55577777666 999999999999999999999996431 12 3566556665544 234445555444
No 380
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.76 E-value=4.2e+02 Score=25.11 Aligned_cols=76 Identities=12% Similarity=0.160 Sum_probs=45.1
Q ss_pred HHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCCEEEEe-ccccccCh
Q 020508 141 CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLA-RYMQILSG 219 (325)
Q Consensus 141 ~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dliv~~-g~~~il~~ 219 (325)
...+||+...- .+...-+.|+ .+....+.++..+....|--+....+ ++..+.+.++++|++|++ |-..++++
T Consensus 138 av~~ll~~~~i-~l~Gk~V~Vi-Grs~~vGrpla~lL~~~~atVtv~hs----~t~~L~~~~~~ADIvI~Avgk~~lv~~ 211 (279)
T PRK14178 138 GIMTLLHEYKI-SIAGKRAVVV-GRSIDVGRPMAALLLNADATVTICHS----KTENLKAELRQADILVSAAGKAGFITP 211 (279)
T ss_pred HHHHHHHHcCC-CCCCCEEEEE-CCCccccHHHHHHHHhCCCeeEEEec----ChhHHHHHHhhCCEEEECCCcccccCH
Confidence 34556665432 1222333444 34333467777787778877654432 234566677799999888 44678888
Q ss_pred hHH
Q 020508 220 KFL 222 (325)
Q Consensus 220 ~~l 222 (325)
+.+
T Consensus 212 ~~v 214 (279)
T PRK14178 212 DMV 214 (279)
T ss_pred HHc
Confidence 775
No 381
>PRK10206 putative oxidoreductase; Provisional
Probab=33.65 E-value=1.1e+02 Score=29.59 Aligned_cols=70 Identities=11% Similarity=0.073 Sum_probs=36.3
Q ss_pred CceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCC-CCEEEecCCCChhHHHHHHHhc--C
Q 020508 128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHG-IPYHYLCAKENEREEELLELVQ--N 204 (325)
Q Consensus 128 ~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~g-Ip~~~~~~~~~~~~~~~~~~l~--~ 204 (325)
++|+++++.|.... +..+..+....-..++++|+...+ ...+.+++++ ++++ + .+.++|+ +
T Consensus 1 ~irvgiiG~G~~~~-~~h~~~~~~~~~~~~l~av~d~~~-----~~~~~~~~~~~~~~~--~--------~~~ell~~~~ 64 (344)
T PRK10206 1 VINCAFIGFGKSTT-RYHLPYVLNRKDSWHVAHIFRRHA-----KPEEQAPIYSHIHFT--S--------DLDEVLNDPD 64 (344)
T ss_pred CeEEEEECCCHHHh-heehhhHhcCCCCEEEEEEEcCCh-----hHHHHHHhcCCCccc--C--------CHHHHhcCCC
Confidence 36999999886221 111222211111478888876432 1236677776 4332 2 1233343 6
Q ss_pred CCEEEEecc
Q 020508 205 TDFLVLARY 213 (325)
Q Consensus 205 ~Dliv~~g~ 213 (325)
+|+++++.-
T Consensus 65 iD~V~I~tp 73 (344)
T PRK10206 65 VKLVVVCTH 73 (344)
T ss_pred CCEEEEeCC
Confidence 788877653
No 382
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=33.64 E-value=1.5e+02 Score=22.58 Aligned_cols=59 Identities=17% Similarity=0.219 Sum_probs=43.5
Q ss_pred HHHHHHHhhhhhhcccceeeeecCCCCCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEe
Q 020508 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (325)
Q Consensus 101 ~L~~~l~~l~~~l~~~~~~~~~~~~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt 163 (325)
-+|.-...+|.++|+.-|..-.++ -+|-+.+.|....+..+++.++.+...+.|.-+-.
T Consensus 18 gFR~~v~~~A~~~gl~G~V~N~~d----g~V~i~~~G~~~~l~~f~~~l~~g~p~a~V~~i~~ 76 (91)
T PF00708_consen 18 GFRPFVKRIARKLGLTGWVRNLPD----GSVEIEAEGEEEQLEEFIKWLKKGPPPARVDEIEV 76 (91)
T ss_dssp SHHHHHHHHHHHTT-EEEEEE-TT----SEEEEEEEEEHHHHHHHHHHHHHSSTTSEEEEEEE
T ss_pred ChhHHHHHHHHHhCCceEEEECCC----CEEEEEEEeCHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 478888899999999988544443 27888888888889999999888765577766543
No 383
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=33.64 E-value=1.6e+02 Score=27.16 Aligned_cols=67 Identities=12% Similarity=0.059 Sum_probs=50.3
Q ss_pred eEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeecc-CCCCeEEEEEEEEeCCCCCChHHHHHHHHhhh
Q 020508 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP-EKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (325)
Q Consensus 42 ~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~-~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~ 110 (325)
++.+++...|=.--+.++.+.+.++|+.|.+.+.... ..++.-.+.+++.+|. ..++.+.+.|..++
T Consensus 51 ~~~l~lev~d~~~a~~~i~~~~~~~gG~i~~~~~~~~~~~~~~~~~~ltiRVP~--~~~~~~l~~l~~~g 118 (262)
T PF14257_consen 51 TADLSLEVKDVEKAVKKIENLVESYGGYIESSSSSSSGGSDDERSASLTIRVPA--DKFDSFLDELSELG 118 (262)
T ss_pred EEEEEEEECCHHHHHHHHHHHHHHcCCEEEEEeeecccCCCCcceEEEEEEECH--HHHHHHHHHHhccC
Confidence 4567788899999999999999999999999888521 2345666788899997 34555555555443
No 384
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=33.64 E-value=2.1e+02 Score=24.44 Aligned_cols=74 Identities=11% Similarity=0.095 Sum_probs=49.6
Q ss_pred CCChHHHHHHHHhhhhhhcccceeeeecCCCCCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCC--CchH
Q 020508 96 KWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP--NSHV 173 (325)
Q Consensus 96 ~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~--~~~~ 173 (325)
..+++++.+.+++.|+++|+ .+.+|=|..-..+-+.|....+ +.-++|-|+..-. ...+
T Consensus 25 ~~tl~~i~~~~~~~a~~~g~--------------~~~~~QSN~EGelId~i~~a~~-----~~dgiIINpga~THtSiAl 85 (146)
T PRK13015 25 HETLADVEALCRAAAEALGL--------------EVEFRQSNHEGELIDWIHEARG-----DVAGIVINPGAYTHTSVAI 85 (146)
T ss_pred CCCHHHHHHHHHHHHHHcCC--------------EEEEEeeCcHHHHHHHHHHhhh-----cCCEEEEcchHHhhhHHHH
Confidence 45789999999999988865 4667778765555554443322 2356788874221 2346
Q ss_pred HHHHHHCCCCEEEec
Q 020508 174 IRFLERHGIPYHYLC 188 (325)
Q Consensus 174 ~~~a~~~gIp~~~~~ 188 (325)
.+..+..++|+..+-
T Consensus 86 ~DAl~~~~~P~VEVH 100 (146)
T PRK13015 86 RDALAALELPVIEVH 100 (146)
T ss_pred HHHHHcCCCCEEEEE
Confidence 777788999998765
No 385
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=33.61 E-value=2.3e+02 Score=21.96 Aligned_cols=66 Identities=15% Similarity=0.185 Sum_probs=36.2
Q ss_pred EeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhc--CCCEEEEec
Q 020508 135 ASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVLAR 212 (325)
Q Consensus 135 ~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~--~~Dliv~~g 212 (325)
+-|.|.-.+.+++.++.+. .+++.|-.++ ...+.+.+.|+++.+-+ ..+++.++... ++|.++++.
T Consensus 3 I~G~g~~~~~i~~~L~~~~--~~vvvid~d~------~~~~~~~~~~~~~i~gd----~~~~~~l~~a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 3 IIGYGRIGREIAEQLKEGG--IDVVVIDRDP------ERVEELREEGVEVIYGD----ATDPEVLERAGIEKADAVVILT 70 (116)
T ss_dssp EES-SHHHHHHHHHHHHTT--SEEEEEESSH------HHHHHHHHTTSEEEES-----TTSHHHHHHTTGGCESEEEEES
T ss_pred EEcCCHHHHHHHHHHHhCC--CEEEEEECCc------HHHHHHHhccccccccc----chhhhHHhhcCccccCEEEEcc
Confidence 3455554555555555432 3555444333 34677788888887644 22345555554 678777653
No 386
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=33.39 E-value=92 Score=25.62 Aligned_cols=85 Identities=18% Similarity=0.183 Sum_probs=46.4
Q ss_pred CceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHC-CCCEEEecCCCChhHHHHHHHhcCCC
Q 020508 128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERH-GIPYHYLCAKENEREEELLELVQNTD 206 (325)
Q Consensus 128 ~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~-gIp~~~~~~~~~~~~~~~~~~l~~~D 206 (325)
..|++|+|+|. ..+.++..+... +.+-+. ++|+. ...+.++++++ +..+...+ . +++.+.+.++|
T Consensus 12 ~~~vlviGaGg--~ar~v~~~L~~~--g~~~i~-i~nRt---~~ra~~l~~~~~~~~~~~~~----~--~~~~~~~~~~D 77 (135)
T PF01488_consen 12 GKRVLVIGAGG--AARAVAAALAAL--GAKEIT-IVNRT---PERAEALAEEFGGVNIEAIP----L--EDLEEALQEAD 77 (135)
T ss_dssp TSEEEEESSSH--HHHHHHHHHHHT--TSSEEE-EEESS---HHHHHHHHHHHTGCSEEEEE----G--GGHCHHHHTES
T ss_pred CCEEEEECCHH--HHHHHHHHHHHc--CCCEEE-EEECC---HHHHHHHHHHcCccccceee----H--HHHHHHHhhCC
Confidence 46999988764 223333333222 233233 45553 23467777776 23333322 0 12334555899
Q ss_pred EEEEecc--ccccChhHHhhcC
Q 020508 207 FLVLARY--MQILSGKFLRSYG 226 (325)
Q Consensus 207 liv~~g~--~~il~~~~l~~~~ 226 (325)
+++.+.- +.+++++.++...
T Consensus 78 ivI~aT~~~~~~i~~~~~~~~~ 99 (135)
T PF01488_consen 78 IVINATPSGMPIITEEMLKKAS 99 (135)
T ss_dssp EEEE-SSTTSTSSTHHHHTTTC
T ss_pred eEEEecCCCCcccCHHHHHHHH
Confidence 9999843 5688888887664
No 387
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=33.24 E-value=1.6e+02 Score=25.89 Aligned_cols=69 Identities=23% Similarity=0.353 Sum_probs=41.3
Q ss_pred HHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhc----CCCEEEEeccccc
Q 020508 141 CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ----NTDFLVLARYMQI 216 (325)
Q Consensus 141 ~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~----~~Dliv~~g~~~i 216 (325)
.+++.++-++... . .+.|++|.. ..-+..++++.|||+.+-..+. ....+.++++ .++=++++|= ++
T Consensus 50 e~~~W~~e~k~~g--i-~v~vvSNn~---e~RV~~~~~~l~v~fi~~A~KP--~~~~fr~Al~~m~l~~~~vvmVGD-qL 120 (175)
T COG2179 50 ELRAWLAELKEAG--I-KVVVVSNNK---ESRVARAAEKLGVPFIYRAKKP--FGRAFRRALKEMNLPPEEVVMVGD-QL 120 (175)
T ss_pred HHHHHHHHHHhcC--C-EEEEEeCCC---HHHHHhhhhhcCCceeecccCc--cHHHHHHHHHHcCCChhHEEEEcc-hh
Confidence 5666666655432 2 345777753 5678889999999998543321 1224444443 5666777763 45
Q ss_pred cC
Q 020508 217 LS 218 (325)
Q Consensus 217 l~ 218 (325)
+.
T Consensus 121 ~T 122 (175)
T COG2179 121 FT 122 (175)
T ss_pred hh
Confidence 44
No 388
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=33.00 E-value=1.7e+02 Score=26.88 Aligned_cols=55 Identities=20% Similarity=0.239 Sum_probs=34.5
Q ss_pred CceEEEEEeCC-c--hHHHHHHHHhhcCCCCceEEEEEeCCCCCCC---chHHHHHHHCCCCEEEec
Q 020508 128 KYKVAVLASKQ-E--HCLVDFLYGWQEGKLPVEITCVISNHDRGPN---SHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 128 ~~ri~v~~Sg~-g--~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~---~~~~~~a~~~gIp~~~~~ 188 (325)
++|.+|+.||. . +++..+++ + ..+|.++-.+--.+.. ..++++|+++|||.+.++
T Consensus 2 ~~kavvl~SGG~DStt~l~~a~~---~---~~ev~alsfdYGQrh~~Ele~A~~iak~lgv~~~iid 62 (222)
T COG0603 2 MKKAVVLLSGGLDSTTCLAWAKK---E---GYEVHALTFDYGQRHRKELEAAKELAKKLGVPHHIID 62 (222)
T ss_pred CceEEEEccCChhHHHHHHHHHh---c---CCEEEEEEeeCCCCcHHHHHHHHHHHHHcCCCeEEec
Confidence 57888888885 2 34333332 2 2567776555432211 236888999999999876
No 389
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.99 E-value=4.2e+02 Score=25.11 Aligned_cols=76 Identities=8% Similarity=0.182 Sum_probs=44.6
Q ss_pred HHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCCEEEEe-ccccccChh
Q 020508 142 LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLA-RYMQILSGK 220 (325)
Q Consensus 142 l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dliv~~-g~~~il~~~ 220 (325)
..+||+...- .+...=+.|+- +...-+.|+..+..+.|--+....+. ...+.+..+++|++|++ |-..+++++
T Consensus 144 vi~lL~~~~i-~l~Gk~vvViG-rS~~VG~Pla~lL~~~~AtVti~hs~----T~~l~~~~~~ADIvV~AvGkp~~i~~~ 217 (281)
T PRK14183 144 VMELLEEYEI-DVKGKDVCVVG-ASNIVGKPMAALLLNANATVDICHIF----TKDLKAHTKKADIVIVGVGKPNLITED 217 (281)
T ss_pred HHHHHHHcCC-CCCCCEEEEEC-CCCcchHHHHHHHHHCCCEEEEeCCC----CcCHHHHHhhCCEEEEecCcccccCHH
Confidence 3456665432 12222344454 43334678888877777666543321 12344556689998887 788889888
Q ss_pred HHh
Q 020508 221 FLR 223 (325)
Q Consensus 221 ~l~ 223 (325)
.+.
T Consensus 218 ~vk 220 (281)
T PRK14183 218 MVK 220 (281)
T ss_pred HcC
Confidence 764
No 390
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=32.69 E-value=93 Score=29.67 Aligned_cols=102 Identities=17% Similarity=0.171 Sum_probs=49.9
Q ss_pred CceEEEEEeCC-c-hHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCC
Q 020508 128 KYKVAVLASKQ-E-HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (325)
Q Consensus 128 ~~ri~v~~Sg~-g-~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 205 (325)
..+++||++|. + +.++.+.... +.+-+.|...... ....+.+.++++|+++...+ +..+.++++
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~-----~i~~v~v~~r~~~-~~~~~~~~~~~~~~~v~~~~--------~~~~av~~a 193 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVR-----PIKEVRVYSRSPE-RAEAFAARLRDLGVPVVAVD--------SAEEAVRGA 193 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS-------SEEEEE-SSHH-HHHHHHHHHHCCCTCEEEES--------SHHHHHTTS
T ss_pred CceEEEECCCHHHHHHHHHHHHhC-----CceEEEEEccChh-HHHHHHHhhccccccceecc--------chhhhcccC
Confidence 46899999985 2 3445444332 2344555543321 11234444445788887654 134456689
Q ss_pred CEEEEeccc----cccChhHHhhcCCCEEEEcCCCCCCCCCCcH
Q 020508 206 DFLVLARYM----QILSGKFLRSYGKDVINIHHGLLPSFKGGKP 245 (325)
Q Consensus 206 Dliv~~g~~----~il~~~~l~~~~~~~iNiHpslLP~yRG~~p 245 (325)
|+|+++.-. -+++.+.+. ++..||.-.+.-|..|-..+
T Consensus 194 Dii~taT~s~~~~P~~~~~~l~--~g~hi~~iGs~~~~~~El~~ 235 (313)
T PF02423_consen 194 DIIVTATPSTTPAPVFDAEWLK--PGTHINAIGSYTPGMRELDD 235 (313)
T ss_dssp SEEEE----SSEEESB-GGGS---TT-EEEE-S-SSTTBESB-H
T ss_pred CEEEEccCCCCCCccccHHHcC--CCcEEEEecCCCCchhhcCH
Confidence 999998653 346666443 45678877888787665543
No 391
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=32.68 E-value=1.4e+02 Score=24.37 Aligned_cols=76 Identities=9% Similarity=0.179 Sum_probs=38.7
Q ss_pred EEEeCCc---hHHHH-HHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCCEE
Q 020508 133 VLASKQE---HCLVD-FLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFL 208 (325)
Q Consensus 133 v~~Sg~g---~~l~~-Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dli 208 (325)
+|++... |.+.+ +++....+.+.+.-.++-..+..+.+....+.++++||+.....+. ..+ +.+..+|+|
T Consensus 2 LFVC~~N~cRSpmAEa~~~~~~~~~~~v~SAG~~~~~g~~~~~~a~~~l~~~Gid~~~~~~~--l~~----~~~~~~DlI 75 (140)
T smart00226 2 LFVCTGNICRSPMAEALFKAIVGDRVKIDSAGTGAWVGGGADPRAVEVLKEHGIALSHHASQ--LTS----SDFKNADLV 75 (140)
T ss_pred EEEeCChhhhHHHHHHHHHHhcCCCEEEEcCcccCCCCCCCCHHHHHHHHHcCcCccceecc--CCH----HHHHhCCEE
Confidence 4555433 33433 5544332222223334332222333566889999999997432211 111 123478999
Q ss_pred EEeccc
Q 020508 209 VLARYM 214 (325)
Q Consensus 209 v~~g~~ 214 (325)
|+..-.
T Consensus 76 v~m~~~ 81 (140)
T smart00226 76 LAMDHS 81 (140)
T ss_pred EEeCHH
Confidence 998643
No 392
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.57 E-value=3.5e+02 Score=25.72 Aligned_cols=74 Identities=15% Similarity=0.248 Sum_probs=45.4
Q ss_pred HHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCCEEEEe-ccccccChh
Q 020508 142 LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLA-RYMQILSGK 220 (325)
Q Consensus 142 l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dliv~~-g~~~il~~~ 220 (325)
..+||+...- .+...-++|+-.. ..-+.|+..+..+.|..+..+.++. +.+.+..+++|++|++ |-..+++++
T Consensus 145 vi~lL~~~~i-~l~Gk~v~vIG~S-~ivG~Pla~lL~~~gatVtv~~s~t----~~l~~~~~~ADIVI~avg~~~~v~~~ 218 (284)
T PRK14179 145 IMEMFREYNV-ELEGKHAVVIGRS-NIVGKPMAQLLLDKNATVTLTHSRT----RNLAEVARKADILVVAIGRGHFVTKE 218 (284)
T ss_pred HHHHHHHhCC-CCCCCEEEEECCC-CcCcHHHHHHHHHCCCEEEEECCCC----CCHHHHHhhCCEEEEecCccccCCHH
Confidence 4556665432 1223334555432 2246788888889999988775221 2244455689998877 778888876
Q ss_pred H
Q 020508 221 F 221 (325)
Q Consensus 221 ~ 221 (325)
.
T Consensus 219 ~ 219 (284)
T PRK14179 219 F 219 (284)
T ss_pred H
Confidence 5
No 393
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=32.53 E-value=70 Score=29.43 Aligned_cols=47 Identities=17% Similarity=0.104 Sum_probs=29.7
Q ss_pred EEeCCchHHHHHHH----HhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEec
Q 020508 134 LASKQEHCLVDFLY----GWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 134 ~~Sg~g~~l~~Ll~----~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~ 188 (325)
++-|+||....+++ +.+.+.+ +|.+|-|... -..+|+++|||+...+
T Consensus 25 vGLGTGSTv~~~i~~L~~~~~~~~l--~i~~VptS~~------t~~~a~~~Gipl~~l~ 75 (228)
T PRK13978 25 LGIGTGSTMELLLPQMAQLIKERGY--NITGVCTSNK------IAFLAKELGIKICEIN 75 (228)
T ss_pred EEeCchHHHHHHHHHHHHHhhccCc--cEEEEeCcHH------HHHHHHHcCCcEechh
Confidence 45566766554444 3444444 4777655442 3788999999987654
No 394
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=32.45 E-value=4.2e+02 Score=24.78 Aligned_cols=41 Identities=12% Similarity=0.148 Sum_probs=23.9
Q ss_pred HHhc--CCCEEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCC
Q 020508 200 ELVQ--NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKG 242 (325)
Q Consensus 200 ~~l~--~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG 242 (325)
++++ +||++++- +.. .........+..++.+|...--.|.|
T Consensus 87 ~~l~~~~pDlVi~d-~~~-~~~~aA~~~~iP~i~i~~q~~~~~~~ 129 (321)
T TIGR00661 87 NIIREYNPDLIISD-FEY-STVVAAKLLKIPVICISNQNYTRYPL 129 (321)
T ss_pred HHHHhcCCCEEEEC-Cch-HHHHHHHhcCCCEEEEecchhhcCCc
Confidence 4444 89999987 332 22333344456688777765444444
No 395
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=32.31 E-value=70 Score=30.80 Aligned_cols=23 Identities=17% Similarity=0.134 Sum_probs=17.2
Q ss_pred CCCCceEEEEEeCC-chHHHHHHH
Q 020508 125 IDPKYKVAVLASKQ-EHCLVDFLY 147 (325)
Q Consensus 125 ~~~~~ri~v~~Sg~-g~~l~~Ll~ 147 (325)
...++||+|+++|. |+.+...+.
T Consensus 4 ~~~~mkI~IiGaGa~G~alA~~La 27 (341)
T PRK12439 4 AKREPKVVVLGGGSWGTTVASICA 27 (341)
T ss_pred ccCCCeEEEECCCHHHHHHHHHHH
Confidence 34568999999997 677766664
No 396
>TIGR00166 S6 ribosomal protein S6. MRP17 protein is a component of the small ribosomal subunit in mitochondria, and is shown here to be an ortholog of S6.
Probab=32.28 E-value=1.8e+02 Score=22.32 Aligned_cols=59 Identities=12% Similarity=0.216 Sum_probs=37.4
Q ss_pred cchHHHHHHHHHhcCCeEeEeeeecc---------CCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcccceeee
Q 020508 53 VGIVAKLSECIASRGGNILAADVFVP---------EKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVR 121 (325)
Q Consensus 53 pGIVa~Vt~~La~~giNI~~l~~~~~---------~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~~~~~ 121 (325)
.+++.++.+.+.+.|+.|..++.-+. ...|.|. .+.++.++ ....+|.. .|.++...+|
T Consensus 18 ~~~~~~~~~~i~~~gg~i~~~~~~G~r~LaY~I~k~~~G~Y~-~~~f~~~~--~~i~el~~-------~lr~~~~VlR 85 (93)
T TIGR00166 18 KGQIERYKKVITLNGAEIVRSEDWGKRRLAYPIKKQLRAHYV-LMNFSGEA--QVIKEFER-------TARINDNVIR 85 (93)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEeecceecceEcCCCceEEEE-EEEEEeCH--HHHHHHHH-------HhcCCcCeEE
Confidence 46788899999999999998887641 2335443 55565554 22344443 4566665555
No 397
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=32.22 E-value=2.5e+02 Score=27.42 Aligned_cols=101 Identities=8% Similarity=0.035 Sum_probs=53.1
Q ss_pred ceEEEEEeCCc-h--HHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecC-CC---Ch----hH--
Q 020508 129 YKVAVLASKQE-H--CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA-KE---NE----RE-- 195 (325)
Q Consensus 129 ~ri~v~~Sg~g-~--~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~-~~---~~----~~-- 195 (325)
++|++.++|.| | ...++.+.+++.... ++...-+... --...-.+++++++.++. .. .. ..
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~-~v~~~~~~~~-----~e~~l~~~~~~~~~~I~~~~~~~~~~~~~~~~~~ 74 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWE-QVIVLGTGDG-----LEAFLVKQYGIEFELIPSGGLRRKGSLKLLKAPF 74 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCcc-EEEEeccccc-----ceeeeccccCceEEEEecccccccCcHHHHHHHH
Confidence 47888888864 4 345566666554322 3444333221 113344566899888872 11 10 00
Q ss_pred ------HHHHHHhc--CCCEEEEeccccccChhHHhhcCCCEEEEcCC
Q 020508 196 ------EELLELVQ--NTDFLVLARYMQILSGKFLRSYGKDVINIHHG 235 (325)
Q Consensus 196 ------~~~~~~l~--~~Dliv~~g~~~il~~~~l~~~~~~~iNiHps 235 (325)
-+..+.|+ +||+++..|..--+|.-+....-.--+-+|-.
T Consensus 75 ~~~~~~~~a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEq 122 (357)
T COG0707 75 KLLKGVLQARKILKKLKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQ 122 (357)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEecCCccccHHHHHHHhCCCCEEEEec
Confidence 12223344 89999998766566665544433323445544
No 398
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=32.19 E-value=61 Score=25.12 Aligned_cols=68 Identities=12% Similarity=0.106 Sum_probs=38.7
Q ss_pred CcceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhh
Q 020508 39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (325)
Q Consensus 39 ~~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l 109 (325)
......+.|.=|+|||-..+..+.+..+. ||++++=..... ..=.+-+-+.++. ..+.+.+.+.|++.
T Consensus 7 ~~~E~~~~v~~PE~pGal~~F~~~l~~~~-nITeF~YR~~~~-~~a~vlvgi~v~~-~~~~~~l~~~L~~~ 74 (91)
T PF00585_consen 7 EGREALFAVEFPERPGALKRFLDALGPRN-NITEFHYRYSGD-DFARVLVGIEVPD-AEDLEELIERLKAL 74 (91)
T ss_dssp H--EEEEEEE--BSTTHCHHHHHCCSSSE--EEEEEEE-TTT-SCSEEEEEEE-SS-THHHHHHHHHHTSS
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhCCCc-eEEEEEEcCCCC-CeeeEEEEEEeCC-HHHHHHHHHHHHHc
Confidence 34577889999999999999999886555 488777653211 1112223455665 33346666666654
No 399
>PRK14431 acylphosphatase; Provisional
Probab=32.07 E-value=1.7e+02 Score=22.62 Aligned_cols=58 Identities=19% Similarity=0.194 Sum_probs=43.0
Q ss_pred HHHHHHhhhhhhcccceeeeecCCCCCceEEEEEeCCchHHHHHHHHhhcCC-CCceEEEEEeC
Q 020508 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGK-LPVEITCVISN 164 (325)
Q Consensus 102 L~~~l~~l~~~l~~~~~~~~~~~~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~-l~~~I~~Vvt~ 164 (325)
+|..-..+|.++|+.-|..-.+ . .|-+.+.|....+.++++.++.+. ..++|..|...
T Consensus 17 FR~~~~~~A~~~gl~G~V~N~~---d--gVei~~qG~~~~l~~f~~~l~~g~p~~a~V~~v~~~ 75 (89)
T PRK14431 17 FRYFTQRIAMNYNIVGTVQNVD---D--YVEIYAQGDDADLERFIQGVIEGASPASNVTSYQLE 75 (89)
T ss_pred EhHHHHHHHhhcCCEEEEEECC---C--cEEEEEEcCHHHHHHHHHHHhcCCCCcEEEEEEEEE
Confidence 5666677889999998743322 1 488889999999999999998876 35777766543
No 400
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=31.95 E-value=1.5e+02 Score=28.78 Aligned_cols=81 Identities=22% Similarity=0.223 Sum_probs=43.0
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecC-C--CC-hhHHHHHHHh
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA-K--EN-EREEELLELV 202 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~-~--~~-~~~~~~~~~l 202 (325)
++||+|+++|. |+.|..++.. + +++|..-.-+++ -+.++-+.+ -...++|. . .+ .-..++.+.+
T Consensus 1 ~~kI~ViGaGswGTALA~~la~--n---g~~V~lw~r~~~-----~~~~i~~~~-~N~~yLp~i~lp~~l~at~Dl~~a~ 69 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLAR--N---GHEVRLWGRDEE-----IVAEINETR-ENPKYLPGILLPPNLKATTDLAEAL 69 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHh--c---CCeeEEEecCHH-----HHHHHHhcC-cCccccCCccCCcccccccCHHHHH
Confidence 47999999997 7898887754 2 255543332221 223333332 11222331 0 11 1123466666
Q ss_pred cCCCEEEEeccccccCh
Q 020508 203 QNTDFLVLARYMQILSG 219 (325)
Q Consensus 203 ~~~Dliv~~g~~~il~~ 219 (325)
+.+|+++++-=++-+++
T Consensus 70 ~~ad~iv~avPs~~~r~ 86 (329)
T COG0240 70 DGADIIVIAVPSQALRE 86 (329)
T ss_pred hcCCEEEEECChHHHHH
Confidence 67899988865555544
No 401
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=31.89 E-value=63 Score=25.29 Aligned_cols=64 Identities=16% Similarity=0.157 Sum_probs=36.3
Q ss_pred HHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHH---HHHHHhcCCCEEEEecc
Q 020508 142 LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREE---ELLELVQNTDFLVLARY 213 (325)
Q Consensus 142 l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~---~~~~~l~~~Dliv~~g~ 213 (325)
+.++++. . ..+++.|.|++. ...+....|-++|++++. .+....+.+ ++.+..++-...+.+||
T Consensus 54 ~~~ll~~---~--~~D~V~I~tp~~--~h~~~~~~~l~~g~~v~~-EKP~~~~~~~~~~l~~~a~~~~~~~~Vg~ 120 (120)
T PF01408_consen 54 LEELLAD---E--DVDAVIIATPPS--SHAEIAKKALEAGKHVLV-EKPLALTLEEAEELVEAAKEKGVKVMVGY 120 (120)
T ss_dssp HHHHHHH---T--TESEEEEESSGG--GHHHHHHHHHHTTSEEEE-ESSSSSSHHHHHHHHHHHHHHTSCEEEE-
T ss_pred HHHHHHh---h--cCCEEEEecCCc--chHHHHHHHHHcCCEEEE-EcCCcCCHHHHHHHHHHHHHhCCEEEEeC
Confidence 6667654 2 356777766553 356788889999998874 333222223 44444444445555554
No 402
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=31.73 E-value=2.6e+02 Score=25.96 Aligned_cols=79 Identities=18% Similarity=0.204 Sum_probs=41.3
Q ss_pred CceEEEEEeCCc-hHH-HHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCC
Q 020508 128 KYKVAVLASKQE-HCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (325)
Q Consensus 128 ~~ri~v~~Sg~g-~~l-~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 205 (325)
..+|.++..|.+ .++ ..+++++..-..+.++..|+.... +....+.+.++.++ .+.... ..+++.+++..+
T Consensus 170 ~~~iLi~~GG~d~~~~~~~~l~~l~~~~~~~~i~vv~G~~~-~~~~~l~~~~~~~~-~i~~~~-----~~~~m~~lm~~a 242 (279)
T TIGR03590 170 LRRVLVSFGGADPDNLTLKLLSALAESQINISITLVTGSSN-PNLDELKKFAKEYP-NIILFI-----DVENMAELMNEA 242 (279)
T ss_pred cCeEEEEeCCcCCcCHHHHHHHHHhccccCceEEEEECCCC-cCHHHHHHHHHhCC-CEEEEe-----CHHHHHHHHHHC
Confidence 356766665543 333 445665543222355555554322 11234566665543 333222 224677778899
Q ss_pred CEEEEecc
Q 020508 206 DFLVLARY 213 (325)
Q Consensus 206 Dliv~~g~ 213 (325)
|++|+++=
T Consensus 243 Dl~Is~~G 250 (279)
T TIGR03590 243 DLAIGAAG 250 (279)
T ss_pred CEEEECCc
Confidence 99999753
No 403
>KOG3075 consensus Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=31.58 E-value=92 Score=29.14 Aligned_cols=136 Identities=21% Similarity=0.155 Sum_probs=73.6
Q ss_pred eEEEEEeCCc--hHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCCh-----hHHHHHHHh
Q 020508 130 KVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENE-----REEELLELV 202 (325)
Q Consensus 130 ri~v~~Sg~g--~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~-----~~~~~~~~l 202 (325)
.|..++||+- .+.+.|.+...++.+ ..|++|-++-. -.+++.++|||+...+..... ..+|+.+
T Consensus 44 ~ViGiGsGstv~~~v~~i~q~l~~~~l-~~vvgVPts~~------s~q~~~~~gi~l~~~d~hp~iDlaidgADEvd~-- 114 (261)
T KOG3075|consen 44 MVIGIGSGSTVVYAVDRIGQLLFDGDL-GNVVGVPTSFR------SAQLALEYGIPLSDLDSHPVIDLAIDGADEVDE-- 114 (261)
T ss_pred eEEEecCccHHHHHHHHHHHHhcCCCc-CceEecccchh------hHHHHHhcCCccccCCCCceeEEEecCchhhCc--
Confidence 3444455542 355556666666764 56788776543 389999999999876632110 1122211
Q ss_pred cCCCEEEEeccccccChhHHhhcCCCEEEEc------CCCCCCCCCC-----cHHHHH-HHhCC--cEeEEEEEEe-cCC
Q 020508 203 QNTDFLVLARYMQILSGKFLRSYGKDVINIH------HGLLPSFKGG-----KPAKQA-FDAGV--KLIGATSHFV-TEE 267 (325)
Q Consensus 203 ~~~Dliv~~g~~~il~~~~l~~~~~~~iNiH------pslLP~yRG~-----~pi~~a-i~~G~--~~~GvTvh~v-~~~ 267 (325)
+-.++ -.|=++...++.+.....+++-+- +.|.-.+++. -|+.|. +.+.. ..+|+-.|+= -..
T Consensus 115 -nln~i-kggGg~l~qEk~v~~~akkfiviad~~k~~~~lg~~~~~gvPvEvvpl~~~~l~~~l~~~~~g~~~~lR~g~~ 192 (261)
T KOG3075|consen 115 -NLNLI-KGGGGCLLQEKDVEGAAKKFIVIADSRKGSKGLGGSGKQGVPVEVVPLAWLKLLENLSEFSFGCEAKLRMGAE 192 (261)
T ss_pred -CcceE-EeccchhhHHHHHHHhhhceEEEeeccccchhhcccccCceeeeehhhHHHHHHHhhhhhhccchheeccccc
Confidence 12222 233456677777766555544432 3344455552 345564 33332 2477777765 555
Q ss_pred CCCCCeEEE
Q 020508 268 LDAGPIIEQ 276 (325)
Q Consensus 268 ~D~G~Ii~Q 276 (325)
-..||++.-
T Consensus 193 ~k~~P~VTD 201 (261)
T KOG3075|consen 193 GKAGPYVTD 201 (261)
T ss_pred ccCCCeEee
Confidence 566666543
No 404
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.43 E-value=3.9e+02 Score=25.45 Aligned_cols=86 Identities=16% Similarity=0.237 Sum_probs=49.8
Q ss_pred HHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCCEEEEe-ccccccCh
Q 020508 141 CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLA-RYMQILSG 219 (325)
Q Consensus 141 ~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dliv~~-g~~~il~~ 219 (325)
...+||+...- .+...-+.|+ .+...-+.|+..+..+.|--+....+. ...+.+..+++|++|++ |-..++++
T Consensus 141 avi~lL~~~~i-~l~Gk~vvVi-GrS~iVGkPla~lL~~~~aTVtichs~----T~~l~~~~~~ADIvIsAvGkp~~i~~ 214 (287)
T PRK14173 141 GVVRLLKHYGI-PLAGKEVVVV-GRSNIVGKPLAALLLREDATVTLAHSK----TQDLPAVTRRADVLVVAVGRPHLITP 214 (287)
T ss_pred HHHHHHHHcCC-CCCCCEEEEE-CCCCccHHHHHHHHHHCCCEEEEeCCC----CCCHHHHHhhCCEEEEecCCcCccCH
Confidence 34556665432 2223334444 443334678888888878766544422 12344556689998887 77888888
Q ss_pred hHHhhcCCCEEEEcCC
Q 020508 220 KFLRSYGKDVINIHHG 235 (325)
Q Consensus 220 ~~l~~~~~~~iNiHps 235 (325)
+.+. .|.+-+--|
T Consensus 215 ~~vk---~GavVIDVG 227 (287)
T PRK14173 215 EMVR---PGAVVVDVG 227 (287)
T ss_pred HHcC---CCCEEEEcc
Confidence 8763 344444444
No 405
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.38 E-value=4e+02 Score=25.52 Aligned_cols=77 Identities=12% Similarity=0.165 Sum_probs=47.1
Q ss_pred HHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCCEEEEe-ccccccCh
Q 020508 141 CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLA-RYMQILSG 219 (325)
Q Consensus 141 ~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dliv~~-g~~~il~~ 219 (325)
...+||+...- .+...-+.|+ .+...-+.|+..+..+.|.-+....++ ...+.+..+++|++|++ |-..++++
T Consensus 144 aii~lL~~~~i-~l~Gk~vvVI-GrS~iVGkPla~lL~~~~atVtv~hs~----T~~l~~~~~~ADIvIsAvGkp~~i~~ 217 (297)
T PRK14186 144 GVMRLLRSQQI-DIAGKKAVVV-GRSILVGKPLALMLLAANATVTIAHSR----TQDLASITREADILVAAAGRPNLIGA 217 (297)
T ss_pred HHHHHHHHhCC-CCCCCEEEEE-CCCccchHHHHHHHHHCCCEEEEeCCC----CCCHHHHHhhCCEEEEccCCcCccCH
Confidence 34556665422 2223334455 444334678888888888777655422 12344555689998887 77888888
Q ss_pred hHHh
Q 020508 220 KFLR 223 (325)
Q Consensus 220 ~~l~ 223 (325)
+.+.
T Consensus 218 ~~ik 221 (297)
T PRK14186 218 EMVK 221 (297)
T ss_pred HHcC
Confidence 8764
No 406
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=31.24 E-value=1.3e+02 Score=29.17 Aligned_cols=120 Identities=13% Similarity=0.134 Sum_probs=62.5
Q ss_pred hHHHHHHHCCCCEEEecCCCChhHHHH----HHHhcCCCEEEEecccc-----------ccChhHHhhcC--CCEEEEcC
Q 020508 172 HVIRFLERHGIPYHYLCAKENEREEEL----LELVQNTDFLVLARYMQ-----------ILSGKFLRSYG--KDVINIHH 234 (325)
Q Consensus 172 ~~~~~a~~~gIp~~~~~~~~~~~~~~~----~~~l~~~Dliv~~g~~~-----------il~~~~l~~~~--~~~iNiHp 234 (325)
.+-++|+++|||+. +++.+...-+.+ ...+-+..++.|.+.++ |-.+++++... .+++++||
T Consensus 203 kldalA~~~giPli-IDnAYg~PFP~iifsd~~~~w~~NiilC~SLSK~GLPG~R~GIiIane~viqaitnmn~iisLap 281 (417)
T COG3977 203 KLDALARQHGIPLI-IDNAYGVPFPGIIFSDATPLWNENIILCMSLSKLGLPGSRCGIIIANEKVIQAITNMNGIISLAP 281 (417)
T ss_pred HHHHHhhhcCCcEE-EecccCCCCCceecccccccCCCCEEEEeehhhcCCCCcceeEEEccHHHHHHHHhccceeeecC
Confidence 36778999999997 453322110100 01111455555554443 22344554432 47999999
Q ss_pred CCC-----------------------CCCCCCcHHHHH-HHhCCcEeEEEEEEecCCCCCCCeEEEEEEeCCCCCCHHHH
Q 020508 235 GLL-----------------------PSFKGGKPAKQA-FDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTF 290 (325)
Q Consensus 235 slL-----------------------P~yRG~~pi~~a-i~~G~~~~GvTvh~v~~~~D~G~Ii~Q~~~~I~~~dt~~~l 290 (325)
|-. |-||-.....-+ +++-..+.-+-+|+ -.|.|..=-+|.=.| -|.++|
T Consensus 282 ~~~G~Aia~~mie~gdl~rlseqVIrPFY~~~~q~~~~~l~~~lp~~~~~iHk-----pEGAIFlWLWf~dLP-Itt~~L 355 (417)
T COG3977 282 GRMGPAIAAEMIESGDLLRLSEQVIRPFYRNRVQTTIAILRRYLPEYRCLIHK-----PEGAIFLWLWFKDLP-ITTEEL 355 (417)
T ss_pred CCccHHHHHHHhhcchHHHHHHHhhhHHHHHHHHHHHHHHHHhcCccceeeec-----CCcceeehhhhccCC-CCHHHH
Confidence 853 222222211112 22223355566666 357777665554333 377889
Q ss_pred HHHHHHHH
Q 020508 291 VQKSEDVE 298 (325)
Q Consensus 291 ~~r~~~~~ 298 (325)
|+|+...+
T Consensus 356 Yq~LKa~G 363 (417)
T COG3977 356 YQRLKARG 363 (417)
T ss_pred HHHHHhCe
Confidence 99887754
No 407
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.23 E-value=4.3e+02 Score=25.17 Aligned_cols=77 Identities=10% Similarity=0.179 Sum_probs=45.2
Q ss_pred HHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCCEEEEe-ccccccCh
Q 020508 141 CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLA-RYMQILSG 219 (325)
Q Consensus 141 ~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dliv~~-g~~~il~~ 219 (325)
....|++...- .+...-+.|+ .+...-+.|+..+..+.|--+....+. ...+.+..+++|++|+| |-..++++
T Consensus 150 av~~ll~~~~i-~l~Gk~vvVi-Grs~iVGkPla~lL~~~~atVtv~hs~----T~~l~~~~~~ADIvv~AvG~p~~i~~ 223 (287)
T PRK14176 150 GVIRALEEYGV-DIEGKNAVIV-GHSNVVGKPMAAMLLNRNATVSVCHVF----TDDLKKYTLDADILVVATGVKHLIKA 223 (287)
T ss_pred HHHHHHHHcCC-CCCCCEEEEE-CCCcccHHHHHHHHHHCCCEEEEEecc----CCCHHHHHhhCCEEEEccCCccccCH
Confidence 34456665322 1222334444 443334678888888888776655422 12345555689998874 78888888
Q ss_pred hHHh
Q 020508 220 KFLR 223 (325)
Q Consensus 220 ~~l~ 223 (325)
+.+.
T Consensus 224 ~~vk 227 (287)
T PRK14176 224 DMVK 227 (287)
T ss_pred HHcC
Confidence 7553
No 408
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=30.97 E-value=1.2e+02 Score=28.49 Aligned_cols=65 Identities=9% Similarity=0.072 Sum_probs=31.9
Q ss_pred ceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhH---HHHHHHhcCCCEEEEeccccccChhHHh
Q 020508 156 VEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENERE---EELLELVQNTDFLVLARYMQILSGKFLR 223 (325)
Q Consensus 156 ~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~---~~~~~~l~~~Dliv~~g~~~il~~~~l~ 223 (325)
.+++.|.|.+. ...++...|-++|.+++. .+....+. +++++.-++..+.+.++|.+...+.+..
T Consensus 68 iD~V~Iatp~~--~H~e~~~~AL~aGkhVl~-EKPla~t~~ea~~l~~~a~~~~~~l~v~~~~Rf~p~~~~ 135 (342)
T COG0673 68 IDAVYIATPNA--LHAELALAALEAGKHVLC-EKPLALTLEEAEELVELARKAGVKLMVGFNRRFDPAVQA 135 (342)
T ss_pred CCEEEEcCCCh--hhHHHHHHHHhcCCEEEE-cCCCCCCHHHHHHHHHHHHHcCCceeeehhhhcCHHHHH
Confidence 34444444332 245556666667776653 22222121 2333333344666666776666655544
No 409
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=30.80 E-value=2.3e+02 Score=25.60 Aligned_cols=114 Identities=13% Similarity=0.132 Sum_probs=61.2
Q ss_pred CCCCCChHHHHHHHHhhhhhhcccceeeeecCCCCCceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCc
Q 020508 93 DPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNS 171 (325)
Q Consensus 93 p~~~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~~~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~ 171 (325)
+..+.+.+.|+..|.++ ||.+ +..++++.+.|+ |+ +|+..--..+.+.+|++++=-.++
T Consensus 62 rG~GYnV~~L~~ff~~~---Lg~~----------~~tnviiVG~GnlG~---All~Y~f~~~~~~~iv~~FDv~~~---- 121 (211)
T COG2344 62 RGYGYNVKYLRDFFDDL---LGQD----------KTTNVIIVGVGNLGR---ALLNYNFSKKNGMKIVAAFDVDPD---- 121 (211)
T ss_pred CCCCccHHHHHHHHHHH---hCCC----------cceeEEEEccChHHH---HHhcCcchhhcCceEEEEecCCHH----
Confidence 34455667776666553 4444 467899988775 44 344432122235788887743321
Q ss_pred hHHHHH-HHCCCCEEEecCCCChhHHHHHHHhc--CCCEEEEec---cccccChhHHhhcCCCEEEEcCCCC
Q 020508 172 HVIRFL-ERHGIPYHYLCAKENEREEELLELVQ--NTDFLVLAR---YMQILSGKFLRSYGKDVINIHHGLL 237 (325)
Q Consensus 172 ~~~~~a-~~~gIp~~~~~~~~~~~~~~~~~~l~--~~Dliv~~g---~~~il~~~~l~~~~~~~iNiHpslL 237 (325)
... +--++|++.++ ++...++ ++|+.+++- -.+-+-+.++++==.|++|+-|.-|
T Consensus 122 ---~VG~~~~~v~V~~~d--------~le~~v~~~dv~iaiLtVPa~~AQ~vad~Lv~aGVkGIlNFtPv~l 182 (211)
T COG2344 122 ---KVGTKIGDVPVYDLD--------DLEKFVKKNDVEIAILTVPAEHAQEVADRLVKAGVKGILNFTPVRL 182 (211)
T ss_pred ---HhCcccCCeeeechH--------HHHHHHHhcCccEEEEEccHHHHHHHHHHHHHcCCceEEeccceEe
Confidence 111 22347776443 3444554 566666542 2233333344433457999988865
No 410
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=30.76 E-value=3.1e+02 Score=27.52 Aligned_cols=79 Identities=14% Similarity=0.233 Sum_probs=46.1
Q ss_pred CceEEEEE--eCCc--hHHHHHHHHhh--cCCCCceEEEEEeC-CCCCC-CchHHHHHHHCCCCEEEecCCCChhHHHHH
Q 020508 128 KYKVAVLA--SKQE--HCLVDFLYGWQ--EGKLPVEITCVISN-HDRGP-NSHVIRFLERHGIPYHYLCAKENEREEELL 199 (325)
Q Consensus 128 ~~ri~v~~--Sg~g--~~l~~Ll~~~~--~~~l~~~I~~Vvt~-~~~~~-~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~ 199 (325)
+.||..|+ +|-| +.|..|-.+.. .+ ..=+++||- .-+-. --.+..||+-.|+|+..+.+. .++.
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~---~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~-----~el~ 273 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKK---KKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSP-----KELA 273 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhcc---CcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCH-----HHHH
Confidence 35666666 3444 67777766543 22 333566663 21111 135788999999999877521 2344
Q ss_pred HHh---cCCCEEEEeccc
Q 020508 200 ELV---QNTDFLVLARYM 214 (325)
Q Consensus 200 ~~l---~~~Dliv~~g~~ 214 (325)
+.+ +++|+|++-.-+
T Consensus 274 ~ai~~l~~~d~ILVDTaG 291 (407)
T COG1419 274 EAIEALRDCDVILVDTAG 291 (407)
T ss_pred HHHHHhhcCCEEEEeCCC
Confidence 433 478888875433
No 411
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=30.48 E-value=2.8e+02 Score=27.59 Aligned_cols=80 Identities=18% Similarity=0.194 Sum_probs=42.9
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCC
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 206 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 206 (325)
..|++|+|.|. |..+...+.. . ++.-+. ++++. .....++|+++|..+..+ +++.+.+.++|
T Consensus 182 ~~~vlViGaG~iG~~~a~~L~~--~---G~~~V~-v~~r~---~~ra~~la~~~g~~~~~~--------~~~~~~l~~aD 244 (423)
T PRK00045 182 GKKVLVIGAGEMGELVAKHLAE--K---GVRKIT-VANRT---LERAEELAEEFGGEAIPL--------DELPEALAEAD 244 (423)
T ss_pred CCEEEEECchHHHHHHHHHHHH--C---CCCeEE-EEeCC---HHHHHHHHHHcCCcEeeH--------HHHHHHhccCC
Confidence 46888887764 3333322221 1 232222 34442 234566888887643211 23445556899
Q ss_pred EEEEec--cccccChhHHhh
Q 020508 207 FLVLAR--YMQILSGKFLRS 224 (325)
Q Consensus 207 liv~~g--~~~il~~~~l~~ 224 (325)
++|.+. -..++..+.+..
T Consensus 245 vVI~aT~s~~~~i~~~~l~~ 264 (423)
T PRK00045 245 IVISSTGAPHPIIGKGMVER 264 (423)
T ss_pred EEEECCCCCCcEEcHHHHHH
Confidence 999984 235666666643
No 412
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=30.48 E-value=2.9e+02 Score=24.35 Aligned_cols=74 Identities=9% Similarity=0.041 Sum_probs=42.8
Q ss_pred hHHHHHHHHhhhhhhcccceeeeecCCCCCceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCC-CCCchHHHH
Q 020508 99 REQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDR-GPNSHVIRF 176 (325)
Q Consensus 99 ~~~L~~~l~~l~~~l~~~~~~~~~~~~~~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~-~~~~~~~~~ 176 (325)
...+.+.+++.|+++|.+- .+. +-+.. .......++.+.+.+ .+ +++..+.+ ....+..+.
T Consensus 13 ~~~~~~g~~~~a~~~g~~~------------~~~-~~~~~d~~~q~~~i~~~i~~~--~d--~Iiv~~~~~~~~~~~l~~ 75 (257)
T PF13407_consen 13 WQQVIKGAKAAAKELGYEV------------EIV-FDAQNDPEEQIEQIEQAISQG--VD--GIIVSPVDPDSLAPFLEK 75 (257)
T ss_dssp HHHHHHHHHHHHHHHTCEE------------EEE-EESTTTHHHHHHHHHHHHHTT--ES--EEEEESSSTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCEE------------EEe-CCCCCCHHHHHHHHHHHHHhc--CC--EEEecCCCHHHHHHHHHH
Confidence 4678888889898887662 111 12222 233344555443333 22 33333322 124578889
Q ss_pred HHHCCCCEEEecC
Q 020508 177 LERHGIPYHYLCA 189 (325)
Q Consensus 177 a~~~gIp~~~~~~ 189 (325)
|.+.|||+..+++
T Consensus 76 ~~~~gIpvv~~d~ 88 (257)
T PF13407_consen 76 AKAAGIPVVTVDS 88 (257)
T ss_dssp HHHTTSEEEEESS
T ss_pred HhhcCceEEEEec
Confidence 9999999998873
No 413
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=30.40 E-value=3.8e+02 Score=24.04 Aligned_cols=17 Identities=24% Similarity=0.094 Sum_probs=14.3
Q ss_pred hHHHHHHHCCCCEEEec
Q 020508 172 HVIRFLERHGIPYHYLC 188 (325)
Q Consensus 172 ~~~~~a~~~gIp~~~~~ 188 (325)
.+...|+..|||...++
T Consensus 47 ~~~~~A~~lgip~~~i~ 63 (218)
T TIGR03679 47 LTRLQAEALGIPLVKIE 63 (218)
T ss_pred HHHHHHHHhCCCEEEEE
Confidence 46788999999998776
No 414
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=30.38 E-value=3.1e+02 Score=27.17 Aligned_cols=83 Identities=12% Similarity=0.145 Sum_probs=48.5
Q ss_pred EEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCC---CchHHHHHHHCCCCEEEecCC-CChhHHHH---HHHhc
Q 020508 131 VAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP---NSHVIRFLERHGIPYHYLCAK-ENEREEEL---LELVQ 203 (325)
Q Consensus 131 i~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~---~~~~~~~a~~~gIp~~~~~~~-~~~~~~~~---~~~l~ 203 (325)
-.+|+.|.-..+...... ++.+=++|||++.-.+ -..+.+..++.||.+..++.- .+...+.+ .+.++
T Consensus 9 ~i~fG~g~l~~l~~~~~~-----~g~~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~~ 83 (377)
T COG1454 9 EILFGRGSLKELGEEVKR-----LGAKRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVAR 83 (377)
T ss_pred eEEecCChHHHHHHHHHh-----cCCCceEEEECCccccchhHHHHHHHHHhcCCeEEEecCCCCCCCHHHHHHHHHHHH
Confidence 345555543333333322 2334478899874211 145788888999999888732 23333333 34444
Q ss_pred --CCCEEEEeccccccC
Q 020508 204 --NTDFLVLARYMQILS 218 (325)
Q Consensus 204 --~~Dliv~~g~~~il~ 218 (325)
+||.+|..|=+-.++
T Consensus 84 ~~~~D~iIalGGGS~~D 100 (377)
T COG1454 84 EFGPDTIIALGGGSVID 100 (377)
T ss_pred hcCCCEEEEeCCccHHH
Confidence 899999999775553
No 415
>PLN02256 arogenate dehydrogenase
Probab=30.36 E-value=1.6e+02 Score=28.01 Aligned_cols=46 Identities=13% Similarity=0.220 Sum_probs=25.9
Q ss_pred CCceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCE
Q 020508 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPY 184 (325)
Q Consensus 127 ~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~ 184 (325)
+++||+|+|.|. |..+...+.. . +.+|.+ +..++ ..+.++++|+..
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~--~---G~~V~~-~d~~~------~~~~a~~~gv~~ 81 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVK--Q---GHTVLA-TSRSD------YSDIAAELGVSF 81 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHh--C---CCEEEE-EECcc------HHHHHHHcCCee
Confidence 457999999886 5554443332 2 245553 33221 246677778753
No 416
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=30.35 E-value=2.2e+02 Score=28.12 Aligned_cols=85 Identities=8% Similarity=-0.049 Sum_probs=47.8
Q ss_pred ceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCC-C--chHHHHHHHCCCCEEEecC-CCChhHH---HHHHH
Q 020508 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP-N--SHVIRFLERHGIPYHYLCA-KENEREE---ELLEL 201 (325)
Q Consensus 129 ~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~-~--~~~~~~a~~~gIp~~~~~~-~~~~~~~---~~~~~ 201 (325)
.|| +|+.|.-..+.++++. ++.+.+.|++.+.-.. + ..+.+..++.||.+..++. ..+...+ +..+.
T Consensus 28 ~~i-~fG~g~~~~l~~~~~~-----~g~~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~ 101 (395)
T PRK15454 28 PVT-LCGPGAVSSCGQQAQT-----RGLKHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQ 101 (395)
T ss_pred CeE-EECcCHHHHHHHHHHh-----cCCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHH
Confidence 344 3454443444444433 1345667777652111 1 3467778899999887752 1233233 34444
Q ss_pred hc--CCCEEEEeccccccCh
Q 020508 202 VQ--NTDFLVLARYMQILSG 219 (325)
Q Consensus 202 l~--~~Dliv~~g~~~il~~ 219 (325)
.+ ++|.||-.|=+..++-
T Consensus 102 ~r~~~~D~IiavGGGS~iD~ 121 (395)
T PRK15454 102 LRESGCDGVIAFGGGSVLDA 121 (395)
T ss_pred HHhcCcCEEEEeCChHHHHH
Confidence 44 8999999997765543
No 417
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=30.33 E-value=2.4e+02 Score=28.15 Aligned_cols=126 Identities=13% Similarity=0.030 Sum_probs=64.6
Q ss_pred CCChHHHHHHHHhhhhhhccccee--eee-----------cCCCCCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEE
Q 020508 96 KWPREQMDEDFFKLSKMFNAMRSV--VRV-----------PDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVI 162 (325)
Q Consensus 96 ~~~~~~L~~~l~~l~~~l~~~~~~--~~~-----------~~~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vv 162 (325)
+...+.-.+-+.++++-+|.+... .+. ...-..+|++|.+ .......+.+.+. +++.+++.|.
T Consensus 255 P~G~~~t~~~l~~l~~~~g~~~~~~i~~~~~~~~~~~~d~~~~l~gkrv~v~g--~~~~~~~l~~~L~--elG~~~~~v~ 330 (429)
T cd03466 255 PIGLRATDEFMSLLSKLTGKPIPEKYTRERGRLLDAMIDAHKYNFGRKAAIYG--EPDFVVAITRFVL--ENGMVPVLIA 330 (429)
T ss_pred CcChHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEc--CHHHHHHHHHHHH--HCCCEEEEEE
Confidence 345566666677777666644110 000 0011346887765 3333333333333 3578888877
Q ss_pred eCCCCCC-CchHHHHHHHCCCCEEEecCCCChhHHHHHHHhc--CCCEEEEeccccccChhHHhhcCCCEEEE
Q 020508 163 SNHDRGP-NSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVLARYMQILSGKFLRSYGKDVINI 232 (325)
Q Consensus 163 t~~~~~~-~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~--~~Dliv~~g~~~il~~~~l~~~~~~~iNi 232 (325)
+...... ...+.++..+++.....+. +.+..++.++++ ++|+++--.+.+.+.. +....++.+
T Consensus 331 ~~~~~~~~~~~l~~~~~~~~~~~~v~~---~~d~~e~~~~l~~~~~dliiG~s~~~~~a~----~~~ip~~~~ 396 (429)
T cd03466 331 TGSESKKLKEKLEEDLKEYVEKCVILD---GADFFDIESYAKELKIDVLIGNSYGRRIAE----KLGIPLIRI 396 (429)
T ss_pred eCCCChHHHHHHHHHHHhcCCceEEEe---CCCHHHHHHHHHhcCCCEEEECchhHHHHH----HcCCCEEEe
Confidence 7553211 1112233444455444333 122356777776 7999999887754443 334445555
No 418
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=30.25 E-value=3.6e+02 Score=26.84 Aligned_cols=190 Identities=13% Similarity=0.018 Sum_probs=97.9
Q ss_pred eEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeec-----cCC-CCeEEEEE-----------------EEEeCCCCCC
Q 020508 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV-----PEK-KNVFYSRS-----------------EFIFDPIKWP 98 (325)
Q Consensus 42 ~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~-----~~~-~g~F~~~~-----------------~v~~p~~~~~ 98 (325)
+..+.+.|.--++-+.++.+.|.+.|+++..+-... ... .+.....+ .+..|- +..
T Consensus 166 ~~~VniiG~~~~~d~~el~~lL~~~Gi~v~~~lp~~~~~d~~~~~~~~~~~~~~~~~~~~A~~L~~~GiP~~~~~~-P~G 244 (427)
T PRK02842 166 HPSLVLVGSLADVVEDQLTLEFKKLGIGVVGFLPARRFTELPAIGPGTVVALAQPFLSDTARALRERGAKVLTAPF-PLG 244 (427)
T ss_pred CCcEEEEEeCCcchHHHHHHHHHHcCCeeEEEeCCccHHHHhhcCcCcEEEEeCHHHHHHHHHHHHcCCccccCCC-CcC
Confidence 344577888778888999999999999986322211 011 11111100 122232 456
Q ss_pred hHHHHHHHHhhhhhhcccce----eee------------ecCCCCCceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEE
Q 020508 99 REQMDEDFFKLSKMFNAMRS----VVR------------VPDIDPKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCV 161 (325)
Q Consensus 99 ~~~L~~~l~~l~~~l~~~~~----~~~------------~~~~~~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~V 161 (325)
.+.-.+-|+++++-+|.+.. .++ ....-..+|+++++-+. ...+..+|. .+++.+++.+
T Consensus 245 ~~~T~~~L~~la~~~g~~~~~~~~~~~~er~~~~~~l~~~~~~l~Gkrvai~g~~~~~~~la~~L~----eelGm~~v~v 320 (427)
T PRK02842 245 PEGTRAWLEAAAAAFGIDPDGLEEREAPAWERARKALEPYRELLRGKRVFFLPDSQLEIPLARFLS----RECGMELVEV 320 (427)
T ss_pred hHHHHHHHHHHHHHhCcCHhHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEECCchhHHHHHHHHH----HhCCCEEEEe
Confidence 67777777788777775422 000 00011246888865221 122333332 2357888888
Q ss_pred EeCCCCCCCchHHHHHHH--CCCCEEEecCCCChhHHHHHHHhc--CCCEEEEeccccccChhHHhhcCCC---EEEEcC
Q 020508 162 ISNHDRGPNSHVIRFLER--HGIPYHYLCAKENEREEELLELVQ--NTDFLVLARYMQILSGKFLRSYGKD---VINIHH 234 (325)
Q Consensus 162 vt~~~~~~~~~~~~~a~~--~gIp~~~~~~~~~~~~~~~~~~l~--~~Dliv~~g~~~il~~~~l~~~~~~---~iNiHp 234 (325)
.|..... ....+..+. .++.+.. + .+..++.+.++ +||+++.-.... + .++ +.... -++.|.
T Consensus 321 ~t~~~~~--~~~~~~~~~l~~~~~v~~-~----~D~~~l~~~i~~~~pDllig~~~~~-~--pl~-r~GfP~~dr~~~~~ 389 (427)
T PRK02842 321 GTPYLNR--RFLAAELALLPDGVRIVE-G----QDVERQLDRIRALRPDLVVCGLGLA-N--PLE-AEGITTKWSIEFVF 389 (427)
T ss_pred CCCCCCH--HHHHHHHHhccCCCEEEE-C----CCHHHHHHHHHHcCCCEEEccCccC-C--chh-hcCCceeEEEeeee
Confidence 7754321 111111121 2555432 1 12345667765 899999765332 2 222 33333 455555
Q ss_pred CCCCCCCCCcHHH
Q 020508 235 GLLPSFKGGKPAK 247 (325)
Q Consensus 235 slLP~yRG~~pi~ 247 (325)
.++=-|+|..-+.
T Consensus 390 ~p~~Gy~G~~~l~ 402 (427)
T PRK02842 390 TPIHGFEQAGDLA 402 (427)
T ss_pred ecccchhhHHHHH
Confidence 5556688876543
No 419
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=30.20 E-value=5.5e+02 Score=25.39 Aligned_cols=199 Identities=7% Similarity=-0.051 Sum_probs=98.3
Q ss_pred ceEEEEEEcC-----CCcchHHHHHHHHHhcCCeEeEeeeec---c---CC-CCeEEEEEE--------------EEeC-
Q 020508 41 THGIHVFHCP-----DEVGIVAKLSECIASRGGNILAADVFV---P---EK-KNVFYSRSE--------------FIFD- 93 (325)
Q Consensus 41 ~~~~ltv~g~-----DrpGIVa~Vt~~La~~giNI~~l~~~~---~---~~-~g~F~~~~~--------------v~~p- 93 (325)
.+..+.+.|. ..+|=+.++.+.|.+.|+++..+-... + .+ .......+. ..+|
T Consensus 161 ~~~~VNiiG~~~~~~~~~~d~~ei~~lL~~~Gl~v~~~~~~~~~~~~i~~~~~A~lniv~~~~~~~~~a~~L~~~~GiP~ 240 (430)
T cd01981 161 EKPSVNLIGPSSLGFHNRHDCRELKRLLHTLGIEVNVVIPEGASVDDLNELPKAWFNIVPYREYGLSAALYLEEEFGMPS 240 (430)
T ss_pred CCCcEEEEcCCCCCCCCcchHHHHHHHHHHcCCeEEEEEcCCCCHHHHHhhhhCeEEEEecHHHHHHHHHHHHHHhCCCe
Confidence 3456777765 237889999999999999997643321 0 00 011111110 0111
Q ss_pred --CCCCChHHHHHHHHhhhhhhcccce----------------eeeecC--------CCCCceEEEEEeCCchHHHHHHH
Q 020508 94 --PIKWPREQMDEDFFKLSKMFNAMRS----------------VVRVPD--------IDPKYKVAVLASKQEHCLVDFLY 147 (325)
Q Consensus 94 --~~~~~~~~L~~~l~~l~~~l~~~~~----------------~~~~~~--------~~~~~ri~v~~Sg~g~~l~~Ll~ 147 (325)
..+...+.-.+-|.++++.+|.+.. ..++.+ .-..+|+++++. +.....+.+
T Consensus 241 ~~~~p~G~~~t~~~l~~i~~~~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~l~gkrv~i~g~--~~~~~~l~~ 318 (430)
T cd01981 241 VKITPIGVVATARFLREIQELLGIQIIPELVNVEPYIDSQTRWVSQSARSSRSIDSQNLTGKRAFVFGD--ATHVAAATR 318 (430)
T ss_pred EeccCCChHHHHHHHHHHHHHhCCccccccCChhHHHHhccchhhhhhhhhhhhhhccccCCeEEEEcC--hHHHHHHHH
Confidence 0134566777778888888876510 000111 112467777652 222222222
Q ss_pred HhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhc--CCCEEEEeccccccChhHHhhc
Q 020508 148 GWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVLARYMQILSGKFLRSY 225 (325)
Q Consensus 148 ~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~--~~Dliv~~g~~~il~~~~l~~~ 225 (325)
.+. .+++.+++.+.+.... ....+.....+.+=-+. +. ....++.+.++ +||+++--.+.+-+- ...
T Consensus 319 ~L~-~elG~~vv~~~~~~~~-~~~~~~~~~~~~~~~~~-i~----~D~~e~~~~i~~~~pdliig~~~~~~~a----~~~ 387 (430)
T cd01981 319 ILA-REMGFRVVGAGTYCKE-DAKWFREQATGYCDEAL-IT----DDHTEVGDMIARTEPELIFGTQMERHIG----KRL 387 (430)
T ss_pred HHH-HHcCCEEEeccCCCcc-HHHHHHHHHHhcCCceE-Ee----cCHHHHHHHHHhhCCCEEEecchhhHHH----HHc
Confidence 211 2357888887765431 11112222222211121 11 11246777776 799999987665443 222
Q ss_pred CCCEEEE--------cCCC-CCC--CCCCcHHHHHHHh
Q 020508 226 GKDVINI--------HHGL-LPS--FKGGKPAKQAFDA 252 (325)
Q Consensus 226 ~~~~iNi--------Hpsl-LP~--yRG~~pi~~ai~~ 252 (325)
....+.+ |+.. -|. |+|..-+...+.|
T Consensus 388 gip~~~~~~pi~~~~~~~~~~p~~Gy~G~~~l~~~i~~ 425 (430)
T cd01981 388 DIPCAVISAPVHIQNFPLGYRPFLGYEGTNVIADTVYN 425 (430)
T ss_pred CCCEEEEeCCceeeccccCCCceeeechHHHHHHHHHH
Confidence 2334433 3333 343 6777776666655
No 420
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=30.15 E-value=2.7e+02 Score=23.68 Aligned_cols=99 Identities=15% Similarity=0.083 Sum_probs=59.0
Q ss_pred CCChHHHHHHHHhhhhhhcccceeeeecCCCCCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCC--CchH
Q 020508 96 KWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP--NSHV 173 (325)
Q Consensus 96 ~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~--~~~~ 173 (325)
..+++++.+.+++.++++|++ +.+|=|.....+-+.|..... +.-++|-|+..-. ...+
T Consensus 23 ~~tl~di~~~~~~~a~~~g~~--------------v~~~QSN~EGelId~i~~a~~-----~~dgiIINpga~THtSiAl 83 (141)
T TIGR01088 23 SQTLEEIVEIIETFAAQLNVE--------------LEFFQSNSEGQLIDKIHEAEG-----QYDGIIINPGALTHTSVAL 83 (141)
T ss_pred CCCHHHHHHHHHHHHHHcCCE--------------EEEEeeCcHHHHHHHHHhccc-----cCCEEEEcChHHhhhHHHH
Confidence 457899999999998888654 566778765555554443221 2357888874221 2346
Q ss_pred HHHHHHCCCCEEEec-CCCChhHHHHH--HHhcCCCEEEEeccc
Q 020508 174 IRFLERHGIPYHYLC-AKENEREEELL--ELVQNTDFLVLARYM 214 (325)
Q Consensus 174 ~~~a~~~gIp~~~~~-~~~~~~~~~~~--~~l~~~Dliv~~g~~ 214 (325)
.+..+..++|+..+- +....+| ++. ..+...=..+.+||+
T Consensus 84 ~DAl~~~~~P~vEVHiSNi~aRE-~fR~~S~is~~~~G~I~G~G 126 (141)
T TIGR01088 84 RDALAAVSLPVVEVHLSNVHARE-EFRHHSYTAPVAGGVIVGLG 126 (141)
T ss_pred HHHHHcCCCCEEEEEcCCccccc-cccccccccccceEEEeecC
Confidence 777788999998765 3322332 222 112233456666664
No 421
>PRK14449 acylphosphatase; Provisional
Probab=30.14 E-value=2.3e+02 Score=21.73 Aligned_cols=59 Identities=12% Similarity=0.075 Sum_probs=44.0
Q ss_pred HHHHHHHhhhhhhcccceeeeecCCCCCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEe
Q 020508 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (325)
Q Consensus 101 ~L~~~l~~l~~~l~~~~~~~~~~~~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt 163 (325)
-+|.-...+|.++|+.-|..-.++ =.|-+.+.|....+.++++.++++...+.|..+-.
T Consensus 17 GFR~fv~~~A~~lgl~G~V~N~~d----G~Vei~~~G~~~~v~~f~~~l~~~~~~a~V~~i~~ 75 (90)
T PRK14449 17 GLRYSVYQKAVSLGITGYAENLYD----GSVEVVAEGDEENIKELINFIKTGLRWARVDNVEE 75 (90)
T ss_pred ChHHHHHHHHHHcCCEEEEEECCC----CeEEEEEEeCHHHHHHHHHHHhhCCCceEEEEEEE
Confidence 377777888999999987433332 26888889988899999999887655567666543
No 422
>PF10741 T2SM_b: Type II secretion system (T2SS), protein M subtype b; InterPro: IPR007690 General secretion pathway (GSP) protein M is a membrane protein involved in the export of proteins in bacteria. It consists of a short cytosolic N-terminal domain, a transmembrane domain, and a C-terminal periplasmic domain. The precise function of this protein is unknown, though in Vibrio cholerae, the EpsM protein interacts with the EpsL protein, and also forms homodimers [],; GO: 0006858 extracellular transport
Probab=30.12 E-value=2.8e+02 Score=21.90 Aligned_cols=54 Identities=17% Similarity=0.339 Sum_probs=37.1
Q ss_pred chHHHHHHHHHhcCCeEeEeeeeccCCCCeE-EEEEEEEeCCCCCChHHHHHHHHhhh
Q 020508 54 GIVAKLSECIASRGGNILAADVFVPEKKNVF-YSRSEFIFDPIKWPREQMDEDFFKLS 110 (325)
Q Consensus 54 GIVa~Vt~~La~~giNI~~l~~~~~~~~g~F-~~~~~v~~p~~~~~~~~L~~~l~~l~ 110 (325)
.+...|...+.+.|+++...+..-....+.| .+.+.+.+.. +.+.|...|..+.
T Consensus 17 ~Lq~~l~~~v~~aG~~v~s~q~~p~~~~~~~~~i~v~~~~~g---~~~~L~~~L~~LE 71 (110)
T PF10741_consen 17 ALQQRLRALVAAAGGQVSSSQVLPPRPDGNFRRISVRVSLEG---DIEALQAFLYALE 71 (110)
T ss_pred HHHHHHHHHHHHcCCEEEEEEecCCCCCCcceEEEEEEEEEe---CHHHHHHHHHHHh
Confidence 4678899999999999998888543223333 3344444433 6788888888876
No 423
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.00 E-value=4.5e+02 Score=24.92 Aligned_cols=77 Identities=13% Similarity=0.224 Sum_probs=46.7
Q ss_pred HHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCCEEEEe-ccccccCh
Q 020508 141 CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLA-RYMQILSG 219 (325)
Q Consensus 141 ~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dliv~~-g~~~il~~ 219 (325)
...+||+...- .+...-+.|+- +...-+.|+..+..+.|--+....++ ...+.+..+++|++|++ |-..++++
T Consensus 143 avi~lL~~y~i-~l~Gk~vvVvG-rS~iVGkPla~lL~~~~atVt~chs~----T~nl~~~~~~ADIvIsAvGkp~~i~~ 216 (282)
T PRK14166 143 GVMKLLKAYEI-DLEGKDAVIIG-ASNIVGRPMATMLLNAGATVSVCHIK----TKDLSLYTRQADLIIVAAGCVNLLRS 216 (282)
T ss_pred HHHHHHHHhCC-CCCCCEEEEEC-CCCcchHHHHHHHHHCCCEEEEeCCC----CCCHHHHHhhCCEEEEcCCCcCccCH
Confidence 34556665422 22233344554 43334678888888888777654422 12244555689998887 78889998
Q ss_pred hHHh
Q 020508 220 KFLR 223 (325)
Q Consensus 220 ~~l~ 223 (325)
+.+.
T Consensus 217 ~~vk 220 (282)
T PRK14166 217 DMVK 220 (282)
T ss_pred HHcC
Confidence 8654
No 424
>PRK00124 hypothetical protein; Validated
Probab=29.99 E-value=3.6e+02 Score=23.17 Aligned_cols=85 Identities=8% Similarity=0.044 Sum_probs=54.5
Q ss_pred EEEEEEeCCCCCChHHHHHHHHhhhhhhcccceeee--ecCC----CCCceEEEEEeCCchHHHHHHHHhhcCCCCceEE
Q 020508 86 SRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVR--VPDI----DPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEIT 159 (325)
Q Consensus 86 ~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~~~~~--~~~~----~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~ 159 (325)
|++-|+-..++ +++.+..+|++++++-+.+. -... ++-.+..+..+|....=..|++.++.|.
T Consensus 1 m~I~VDADACP-----Vk~~i~r~a~r~~i~v~~Vas~n~~~~~~~~~~v~~v~V~~g~D~AD~~Iv~~~~~gD------ 69 (151)
T PRK00124 1 MKIYVDADACP-----VKDIIIRVAERHGIPVTLVASFNHFLRVPYSPFIRTVYVDAGFDAADNEIVQLAEKGD------ 69 (151)
T ss_pred CEEEEECCCCc-----HHHHHHHHHHHHCCeEEEEEeCCcccCCCCCCceEEEEeCCCCChHHHHHHHhCCCCC------
Confidence 45667666654 78888888999999866544 2211 1123555544454444344666666553
Q ss_pred EEEeCCCCCCCchHHHHHHHCCCCEEE
Q 020508 160 CVISNHDRGPNSHVIRFLERHGIPYHY 186 (325)
Q Consensus 160 ~Vvt~~~~~~~~~~~~~a~~~gIp~~~ 186 (325)
.|||+ +-++..++-..|.-+..
T Consensus 70 iVIT~-----Di~LAa~~l~Kga~vl~ 91 (151)
T PRK00124 70 IVITQ-----DYGLAALALEKGAIVLN 91 (151)
T ss_pred EEEeC-----CHHHHHHHHHCCCEEEC
Confidence 47885 46899999999998864
No 425
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=29.96 E-value=2.2e+02 Score=26.98 Aligned_cols=136 Identities=11% Similarity=0.052 Sum_probs=73.1
Q ss_pred CCCCeEEEEEEEEeCCCCCChHHHHHHH-HhhhhhhcccceeeeecCCCCCceEEEEEeCC-c-hHHHHHHHHhhcCCCC
Q 020508 79 EKKNVFYSRSEFIFDPIKWPREQMDEDF-FKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQ-E-HCLVDFLYGWQEGKLP 155 (325)
Q Consensus 79 ~~~g~F~~~~~v~~p~~~~~~~~L~~~l-~~l~~~l~~~~~~~~~~~~~~~~ri~v~~Sg~-g-~~l~~Ll~~~~~~~l~ 155 (325)
+.+|...+.++. .....+|.+= ..++.++ .+ + ...++++|++|. + +.++.+..- . +
T Consensus 83 ~~TG~p~Almd~------~~lT~~RTaA~salaa~~------l~-~---da~~l~iiGaG~QA~~~~~a~~~v-~----~ 141 (301)
T PRK06407 83 VNNPELVAIFEA------NRLGQIRTGAVTAYATSI------LH-K---NVENFTIIGSGFQAETQLEGMASV-Y----N 141 (301)
T ss_pred CCCCCEEEEEcc------chHHHHHHHHHHHHHHHH------hh-c---CCcEEEEECCcHHHHHHHHHHHhc-C----C
Confidence 456666655533 2367777732 2333332 22 2 247999999885 2 344444432 1 2
Q ss_pred ceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCCEEEEecc--ccccChhHHhhcCCCEEEEc
Q 020508 156 VEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARY--MQILSGKFLRSYGKDVINIH 233 (325)
Q Consensus 156 ~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dliv~~g~--~~il~~~~l~~~~~~~iNiH 233 (325)
.+=+.|.............++.++.|+++...+ ...+.++++|+|+++.- --+++.+.+. ++--||.=
T Consensus 142 i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~--------~~~eav~~aDIV~taT~s~~P~~~~~~l~--pg~hV~ai 211 (301)
T PRK06407 142 PKRIRVYSRNFDHARAFAERFSKEFGVDIRPVD--------NAEAALRDADTITSITNSDTPIFNRKYLG--DEYHVNLA 211 (301)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeC--------CHHHHHhcCCEEEEecCCCCcEecHHHcC--CCceEEec
Confidence 333445533211001112333344588887554 12344558999999854 3345555443 34578888
Q ss_pred CCCCCCCCCCcH
Q 020508 234 HGLLPSFKGGKP 245 (325)
Q Consensus 234 pslLP~yRG~~p 245 (325)
.|..|.-|-..|
T Consensus 212 Gs~~p~~~El~~ 223 (301)
T PRK06407 212 GSNYPNRREAEH 223 (301)
T ss_pred CCCCCCcccCCH
Confidence 888887777665
No 426
>PLN02712 arogenate dehydrogenase
Probab=29.94 E-value=1.3e+02 Score=32.10 Aligned_cols=48 Identities=13% Similarity=0.151 Sum_probs=27.2
Q ss_pred CCCCceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCE
Q 020508 125 IDPKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPY 184 (325)
Q Consensus 125 ~~~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~ 184 (325)
..+++||+|+|.|. |..+..-+.. . +++|.+ +. ++. -.+.|++.|+..
T Consensus 49 ~~~~~kIgIIG~G~mG~slA~~L~~--~---G~~V~~-~d-r~~-----~~~~A~~~Gv~~ 97 (667)
T PLN02712 49 NTTQLKIAIIGFGNYGQFLAKTLIS--Q---GHTVLA-HS-RSD-----HSLAARSLGVSF 97 (667)
T ss_pred cCCCCEEEEEccCHHHHHHHHHHHH--C---CCEEEE-Ee-CCH-----HHHHHHHcCCEE
Confidence 34578999999876 5554443322 2 356543 33 321 135677888754
No 427
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=29.94 E-value=2.4e+02 Score=22.24 Aligned_cols=78 Identities=12% Similarity=0.098 Sum_probs=44.3
Q ss_pred CChHHHHHHHHhhhhhhccccee---eeecCCCCCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchH
Q 020508 97 WPREQMDEDFFKLSKMFNAMRSV---VRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHV 173 (325)
Q Consensus 97 ~~~~~L~~~l~~l~~~l~~~~~~---~~~~~~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~ 173 (325)
.+.++--+.|..|++..|.+.-. .+.+.+++ =-+|++|.-..+..+++. .++-.|+.+.+ ..+...
T Consensus 4 ~~~~~~l~El~~L~~t~g~~vv~~~~q~~~~~~p---~~~iG~GK~eei~~~~~~-------~~~d~vvfd~~-Lsp~Q~ 72 (95)
T PF13167_consen 4 YDFEESLEELEELAETAGYEVVGTVVQKRRKPDP---KTYIGSGKVEEIKELIEE-------LDADLVVFDNE-LSPSQQ 72 (95)
T ss_pred ccHHHHHHHHHHHHHHCCCeEEEEEEecCCCCCc---ceeechhHHHHHHHHHhh-------cCCCEEEECCC-CCHHHH
Confidence 45666667788888888766321 11111222 234566664455554432 23345666664 345666
Q ss_pred HHHHHHCCCCEE
Q 020508 174 IRFLERHGIPYH 185 (325)
Q Consensus 174 ~~~a~~~gIp~~ 185 (325)
..+-+..|+++.
T Consensus 73 rNLe~~~~~~V~ 84 (95)
T PF13167_consen 73 RNLEKALGVKVI 84 (95)
T ss_pred HHHHHHHCCeee
Confidence 777888888885
No 428
>PF01250 Ribosomal_S6: Ribosomal protein S6; InterPro: IPR000529 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S6 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S6 is known to bind together with S18 to 16S ribosomal RNA. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities, groups bacterial, red algal chloroplast and cyanelle S6 ribosomal proteins.; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 3BBN_F 3R3T_B 3F1E_F 2QNH_g 2OW8_g 3PYQ_F 3PYS_F 3PYU_F 3MR8_F 3PYN_F ....
Probab=29.83 E-value=1.7e+02 Score=22.30 Aligned_cols=53 Identities=11% Similarity=0.285 Sum_probs=36.5
Q ss_pred CcchHHHHHHHHHhcCCeEeEeeeecc---------CCCCeEEEEEEEEeCCCCCChHHHHHHHH
Q 020508 52 EVGIVAKLSECIASRGGNILAADVFVP---------EKKNVFYSRSEFIFDPIKWPREQMDEDFF 107 (325)
Q Consensus 52 rpGIVa~Vt~~La~~giNI~~l~~~~~---------~~~g~F~~~~~v~~p~~~~~~~~L~~~l~ 107 (325)
..-++..+...+.+.|+.|.+++.-+. ...|.|. .+.++.++ ....+|+..|.
T Consensus 18 ~~~~~~~~~~~i~~~gg~v~~~~~~G~r~LaY~i~k~~~G~Y~-~~~f~~~~--~~i~el~~~l~ 79 (92)
T PF01250_consen 18 IKKLIERVKKIIEKNGGVVRSVENWGKRRLAYPIKKQKEGHYF-LFNFDASP--SAIKELERKLR 79 (92)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEEEEEEEEESSEETTECEEEEE-EEEEEEST--THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEEeecccccCCCCCCEEEEE-EEEEEeCH--HHHHHHHHHhc
Confidence 456788999999999999999888651 2345553 56676665 34566665443
No 429
>PRK00453 rpsF 30S ribosomal protein S6; Reviewed
Probab=29.82 E-value=2e+02 Score=22.77 Aligned_cols=60 Identities=18% Similarity=0.322 Sum_probs=39.4
Q ss_pred CcchHHHHHHHHHhcCCeEeEeeeecc---------CCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcccceeee
Q 020508 52 EVGIVAKLSECIASRGGNILAADVFVP---------EKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVR 121 (325)
Q Consensus 52 rpGIVa~Vt~~La~~giNI~~l~~~~~---------~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~~~~~ 121 (325)
.-.++..+...|.+.|+.|.+++.-+. ...|.|+ .+.++.++ ....+|.. .+.++...+|
T Consensus 19 ~~~~~~~~~~~i~~~gg~i~~~~~~G~r~LAY~I~k~~~G~Y~-~~~f~~~~--~~i~el~~-------~l~~~~~VlR 87 (108)
T PRK00453 19 VKALVERFKGVITENGGTIHKVEDWGRRRLAYPINKLRKGHYV-LLNFEAPP--AAIAELER-------LFRINEDVLR 87 (108)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEecccccccceEcCCCcEEEEE-EEEEEeCH--HHHHHHHH-------HhCCCCCeEE
Confidence 567889999999999999999887641 3346553 56666554 23444444 4555555555
No 430
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=29.80 E-value=3.8e+02 Score=28.02 Aligned_cols=137 Identities=14% Similarity=0.180 Sum_probs=64.8
Q ss_pred CceEEEEE-eCCc--hHHHHHHHHhhcCCCCceEEEEEeCCCCCC-CchHHHHHHHCCCCEEEecCCCChhHHHHHHHh-
Q 020508 128 KYKVAVLA-SKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-NSHVIRFLERHGIPYHYLCAKENEREEELLELV- 202 (325)
Q Consensus 128 ~~ri~v~~-Sg~g--~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~-~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l- 202 (325)
...|++.+ +|.| +.+..|...+.....+.+|..|-++..+.. ...+..+++..|+++.... ...++.+.+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~-----d~~~L~~aL~ 424 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEAD-----SAESLLDLLE 424 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecC-----cHHHHHHHHH
Confidence 34555554 4555 344555544322211234443333332111 1235566788899887543 112333444
Q ss_pred --cCCCEEEEeccccccChhH-H------h-hcCC-CEEEEcCCCCCCCCC---CcHHHHHHHhCCcEeEEEEEEecCCC
Q 020508 203 --QNTDFLVLARYMQILSGKF-L------R-SYGK-DVINIHHGLLPSFKG---GKPAKQAFDAGVKLIGATSHFVTEEL 268 (325)
Q Consensus 203 --~~~Dliv~~g~~~il~~~~-l------~-~~~~-~~iNiHpslLP~yRG---~~pi~~ai~~G~~~~GvTvh~v~~~~ 268 (325)
.+.|+|++=..+..-.+.. . . .... .++ .+|.-.+ ...+...+. .....|+=+-++|+.-
T Consensus 425 ~l~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lL-----VLpAtss~~Dl~eii~~f~-~~~~~gvILTKlDEt~ 498 (559)
T PRK12727 425 RLRDYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLL-----VLPANAHFSDLDEVVRRFA-HAKPQGVVLTKLDETG 498 (559)
T ss_pred HhccCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEE-----EEECCCChhHHHHHHHHHH-hhCCeEEEEecCcCcc
Confidence 4789999877664322211 1 1 1111 111 1232222 222333333 2356788888888876
Q ss_pred CCCCeEE
Q 020508 269 DAGPIIE 275 (325)
Q Consensus 269 D~G~Ii~ 275 (325)
--|.++.
T Consensus 499 ~lG~aLs 505 (559)
T PRK12727 499 RFGSALS 505 (559)
T ss_pred chhHHHH
Confidence 6676654
No 431
>PRK08286 cbiC cobalt-precorrin-8X methylmutase; Validated
Probab=29.28 E-value=1.3e+02 Score=27.51 Aligned_cols=128 Identities=10% Similarity=0.047 Sum_probs=65.2
Q ss_pred CcchHHHHHHHHHhcCCeE-eEeeeeccCCC----CeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcccceeeeecCCC
Q 020508 52 EVGIVAKLSECIASRGGNI-LAADVFVPEKK----NVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDID 126 (325)
Q Consensus 52 rpGIVa~Vt~~La~~giNI-~~l~~~~~~~~----g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~~ 126 (325)
++|-|..-...|. .|+.| .|.++--.... ..|-..+.-.+.+ .+..++ +++.|..|+...+....
T Consensus 59 s~~av~ag~~AL~-~g~~IvtDv~MV~aGI~~~~l~~~g~~v~c~i~d--~~v~e~-------A~~~g~TRsaaam~~a~ 128 (214)
T PRK08286 59 SPDALEKIIDALR-NPCTIYTDTTMALSGINKRLLDTLGCEYRCYISD--PRVVEL-------AKEQGITRSMAAVDIAA 128 (214)
T ss_pred ChHHHHHHHHHHH-CCCCEEEehHHHHHHhChhhHhhcCCcEEEEcCC--cchHHH-------HHhcCCcHHHHHHHHHH
Confidence 3577777777774 45554 44444321111 1222333333322 112222 34556666543322211
Q ss_pred CCceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCC-chHHHHHHHCCCCEEEec-CCC
Q 020508 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPN-SHVIRFLERHGIPYHYLC-AKE 191 (325)
Q Consensus 127 ~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~-~~~~~~a~~~gIp~~~~~-~~~ 191 (325)
+...=++++-|+ .+.|..|++.++++. .+..+||.-|----+ ...++...+.+||+.... ++.
T Consensus 129 ~~~~~~IvvIGNAPTAL~~l~~li~~g~--~~PalVIG~PVGFV~AaEsKe~L~~~~iP~It~~GrkG 194 (214)
T PRK08286 129 AEEGPKLFVFGNAPTALFRLLEMVEHGQ--LQVDAVVGVPVGFVGAAESKEALTESDLPAIAALGRKG 194 (214)
T ss_pred hccCCcEEEEeCcHHHHHHHHHHHHcCC--CCCcEEEEeCCccccHHHHHHHHHhCCCCEEEEecCCC
Confidence 111212444554 588999999888765 345566665531111 335677778999998776 443
No 432
>PRK14974 cell division protein FtsY; Provisional
Probab=29.21 E-value=4.4e+02 Score=25.57 Aligned_cols=222 Identities=9% Similarity=0.087 Sum_probs=97.3
Q ss_pred EEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCC-hHHHHHHHHhhh-hhhccccee---ee
Q 020508 47 FHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWP-REQMDEDFFKLS-KMFNAMRSV---VR 121 (325)
Q Consensus 47 v~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~-~~~L~~~l~~l~-~~l~~~~~~---~~ 121 (325)
+...|=+-...++-..|-+.+++..-....+........ .-.++. ..+ .+.+++.+.+.- +-++...+. .+
T Consensus 58 ~~~~~~~~~l~~l~~~Ll~~dv~~~~a~~i~~~~~~~~~---~~~~~~-~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~ 133 (336)
T PRK14974 58 IKEKDIEDLLEELELELLESDVALEVAEEILESLKEKLV---GKKVKR-GEDVEEIVKNALKEALLEVLSVGDLFDLIEE 133 (336)
T ss_pred cCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHh---hccCCC-ccCHHHHHHHHHHHHHHHHhCCCcchhhhhh
Confidence 445566667777777787777776543333221111000 011222 112 222344433322 222211100 01
Q ss_pred ecCCCCCceEEEEE-eCCc--hHHHHHHHHhhcCCCCceEEEEEeCCCCCC-CchHHHHHHHCCCCEEEecCCCChhHH-
Q 020508 122 VPDIDPKYKVAVLA-SKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-NSHVIRFLERHGIPYHYLCAKENEREE- 196 (325)
Q Consensus 122 ~~~~~~~~ri~v~~-Sg~g--~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~-~~~~~~~a~~~gIp~~~~~~~~~~~~~- 196 (325)
++...++..|++.+ .|.| +.+..|...++.. +..++.+-++.-+.. ...+..+|+..|+|++..... .....
T Consensus 134 ~~~~~~~~vi~~~G~~GvGKTTtiakLA~~l~~~--g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g-~dp~~v 210 (336)
T PRK14974 134 IKSKGKPVVIVFVGVNGTGKTTTIAKLAYYLKKN--GFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYG-ADPAAV 210 (336)
T ss_pred hhccCCCeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCC-CCHHHH
Confidence 12222333444444 2334 4555566555433 244443333321111 124677899999999743211 11111
Q ss_pred --HHHHHhc--CCCEEEEecccccc-ChhHHhhcCC--CEEEEcCC--CCCCCCCCcHHHHHH--HhCCcEeEEEEEEec
Q 020508 197 --ELLELVQ--NTDFLVLARYMQIL-SGKFLRSYGK--DVINIHHG--LLPSFKGGKPAKQAF--DAGVKLIGATSHFVT 265 (325)
Q Consensus 197 --~~~~~l~--~~Dliv~~g~~~il-~~~~l~~~~~--~~iNiHps--lLP~yRG~~pi~~ai--~~G~~~~GvTvh~v~ 265 (325)
+.++..+ +.|++++=.-++.- +..+++..+. ..++-|-. .+..--|...+.++- ..-....|+-+=++|
T Consensus 211 ~~~ai~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIlTKlD 290 (336)
T PRK14974 211 AYDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVD 290 (336)
T ss_pred HHHHHHHHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEEeeec
Confidence 1122222 68977776555443 3344332210 01111111 122334666665543 333567888888888
Q ss_pred CCCCCCCeEE
Q 020508 266 EELDAGPIIE 275 (325)
Q Consensus 266 ~~~D~G~Ii~ 275 (325)
+.---|.++.
T Consensus 291 ~~~~~G~~ls 300 (336)
T PRK14974 291 ADAKGGAALS 300 (336)
T ss_pred CCCCccHHHH
Confidence 8655565543
No 433
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=29.13 E-value=2.8e+02 Score=23.59 Aligned_cols=99 Identities=16% Similarity=0.128 Sum_probs=59.3
Q ss_pred CCChHHHHHHHHhhhhhhcccceeeeecCCCCCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCC--CchH
Q 020508 96 KWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP--NSHV 173 (325)
Q Consensus 96 ~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~--~~~~ 173 (325)
..+.+++.+.+.+.|+++|++ +.+|=|.....+-+.|..... +..++|-|+..-. ...+
T Consensus 23 ~~tl~~i~~~l~~~a~~~g~~--------------v~~~QSN~Egelid~I~~a~~-----~~dgiIINpga~THtSvAi 83 (140)
T cd00466 23 TTTLADIEALLRELAAELGVE--------------VEFFQSNHEGELIDWIHEARD-----GADGIIINPGAYTHTSIAL 83 (140)
T ss_pred cCCHHHHHHHHHHHHHHcCCE--------------EEEEeeCcHHHHHHHHHHhhc-----cCcEEEEcchHHHHHHHHH
Confidence 467899999999998887654 667778765555554444321 2457888874211 2346
Q ss_pred HHHHHHCCCCEEEec-CCCChhHHHHHHH--hcCCCEEEEeccc
Q 020508 174 IRFLERHGIPYHYLC-AKENEREEELLEL--VQNTDFLVLARYM 214 (325)
Q Consensus 174 ~~~a~~~gIp~~~~~-~~~~~~~~~~~~~--l~~~Dliv~~g~~ 214 (325)
.+.....++|+..+- +....+| ++... +...=..+.+||+
T Consensus 84 ~DAl~~~~~P~VEVHiSNi~aRE-~fR~~S~is~~~~G~I~G~G 126 (140)
T cd00466 84 RDALAAVSIPVIEVHISNIHARE-EFRHHSVISPVATGVIAGLG 126 (140)
T ss_pred HHHHHcCCCCEEEEecCCccccc-ccccccccccceeEEEEeCC
Confidence 777888999998765 3322232 22211 2233455666664
No 434
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.05 E-value=3.2e+02 Score=28.24 Aligned_cols=66 Identities=8% Similarity=0.210 Sum_probs=38.7
Q ss_pred hHHHHHHHHhhh---hhhcccceeeeecCCCCCceEEEEEe---CCchHHHHHHHHhhcCCCCceEEEEEeCCC
Q 020508 99 REQMDEDFFKLS---KMFNAMRSVVRVPDIDPKYKVAVLAS---KQEHCLVDFLYGWQEGKLPVEITCVISNHD 166 (325)
Q Consensus 99 ~~~L~~~l~~l~---~~l~~~~~~~~~~~~~~~~ri~v~~S---g~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~ 166 (325)
.+.|+++|-++- ...++-|.+.+.....+|+=|.|++- |..++|..+-..+.++ ++.|.-+-|+.=
T Consensus 346 k~Al~daLvQILTP~~sVDlLRdI~sar~~krPYVi~fvGVNGVGKSTNLAKIayWLlqN--kfrVLIAACDTF 417 (587)
T KOG0781|consen 346 KEALRDALVQILTPQRSVDLLRDIMSARRRKRPYVISFVGVNGVGKSTNLAKIAYWLLQN--KFRVLIAACDTF 417 (587)
T ss_pred HHHHHHHHHHHcCCCchhhHHHHHHHHHhcCCCeEEEEEeecCccccchHHHHHHHHHhC--CceEEEEeccch
Confidence 356777776664 23344444444444455666766653 2347988876665555 467766677653
No 435
>PF02570 CbiC: Precorrin-8X methylmutase; InterPro: IPR003722 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CbiC and CobH precorrin-8X methylmutase (also known as precorrin isomerase, 5.4.1.2 from EC), both as stand-alone enzymes and when CobJ forms part of a bifunctional enzyme. CobH and CbiC from the aerobic and anaerobic pathways, respectively, catalyse a methyl rearrangement in precorrin-8 that moves the methyl group from C-11 to C-12 to produce hydrogenobyrinic acid []. Hydrogenobyrinic acid now contains all the major framework alterations associated with corrin synthesis []. CobH and CbiC can sometimes be fused to other enzymes in the cobalamin pathway to make bifunctional enzymes: e.g., with CobJ/CibH (precorrin-3B C17-methylase/precorrin isomerase, IPR014422 from INTERPRO) and with CbiX (precorrin isomerase, IPR012067 from INTERPRO).; GO: 0016993 precorrin-8X methylmutase activity, 0009236 cobalamin biosynthetic process; PDB: 1V9C_B 1I1H_A 1F2V_A 1OU0_B 2AFV_A 2AFR_A 3E7D_D.
Probab=28.97 E-value=65 Score=28.98 Aligned_cols=124 Identities=17% Similarity=0.146 Sum_probs=63.3
Q ss_pred cchHHHHHHHHHhcCCeEe-EeeeeccCCC----CeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcccceeeeecCCCC
Q 020508 53 VGIVAKLSECIASRGGNIL-AADVFVPEKK----NVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDP 127 (325)
Q Consensus 53 pGIVa~Vt~~La~~giNI~-~l~~~~~~~~----g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~~~ 127 (325)
+|-|...-+.|.. |+.|+ |.++--...+ ..|...+.-.+.+ .+..+ ++++.|..|+...+....+
T Consensus 47 ~~av~~g~~AL~~-g~~IvtDv~Mv~aGI~~~~l~~~g~~v~c~i~d----~~v~~-----~A~~~g~TRs~aa~~~a~~ 116 (198)
T PF02570_consen 47 PDAVEAGVEALRA-GAPIVTDVNMVAAGINKRRLAKLGNEVYCYIDD----PEVAE-----LAKEEGITRSAAAMRKAAK 116 (198)
T ss_dssp TTHHHHHHHHHHT-T-EEEESSHHHHHHS-HHHHHTCT-EEEECTTS----HHHHH-----HHHHHTS-HHHHHHHHHHC
T ss_pred cHHHHHHHHHHHC-CCeEEEchHHHHHHhCHhhHHHcCCcEEEECCC----CchHH-----HHhhcCCcHHHHHHHHHHH
Confidence 5677888888855 66664 3333211111 1233344443322 22222 2334455555444333223
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCC-CchHHHHHHHCCCCEEEec
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGP-NSHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~-~~~~~~~a~~~gIp~~~~~ 188 (325)
..+=++|+-|+ .+.|..|++.++++.. +..+||.-|---- ...-++...+.++|+....
T Consensus 117 ~~~~~I~vIGNAPTAL~~ll~li~~~~~--~PalVIg~PVGFV~A~ESKe~L~~~~vP~I~~~ 177 (198)
T PF02570_consen 117 ELPGAIVVIGNAPTALFELLELIEEGGV--RPALVIGVPVGFVGAAESKEALMQSGVPYITVR 177 (198)
T ss_dssp TTTTCEEEESS-HHHHHHHHHHHHTTT---TTSEEEE---SSSSHHHHHHHHHHSTS-EEEES
T ss_pred HcCCcEEEEeCcHHHHHHHHHHHHhcCC--CCcEEEECCCcccCcHHHHHHHHhCCCCEEEEe
Confidence 34445566666 5899999999887653 4455555442111 1446788888899998776
No 436
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=28.96 E-value=2.3e+02 Score=22.80 Aligned_cols=30 Identities=20% Similarity=0.222 Sum_probs=17.6
Q ss_pred EEEEeCCCCCCC------chHHHHHHHCCCCEEEec
Q 020508 159 TCVISNHDRGPN------SHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 159 ~~Vvt~~~~~~~------~~~~~~a~~~gIp~~~~~ 188 (325)
..||+++++... ....+.|+++|+.++++|
T Consensus 29 ktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iP 64 (110)
T PF04273_consen 29 KTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIP 64 (110)
T ss_dssp -EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE--
T ss_pred cEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEee
Confidence 467888755321 236789999999999998
No 437
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=28.92 E-value=1.1e+02 Score=29.81 Aligned_cols=54 Identities=20% Similarity=0.150 Sum_probs=34.3
Q ss_pred eEEEEEeCCc-h-HHHHHHHHhhcCCCCceEEEEEeCCCCC--------C---CchHHHHHHHCCCCEEEec
Q 020508 130 KVAVLASKQE-H-CLVDFLYGWQEGKLPVEITCVISNHDRG--------P---NSHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 130 ri~v~~Sg~g-~-~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~--------~---~~~~~~~a~~~gIp~~~~~ 188 (325)
||++..||.- | .+..++.. . +.++.+|..+.-.. . ...+.++|+++|||++.++
T Consensus 1 kVlValSGGvDSsvla~lL~~--~---g~~v~~v~i~~~~~~~~~~~~~s~~d~~~a~~va~~lgI~~~vvd 67 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKE--Q---GYEVIGVFMKNWDEDDGKGGCCSEEDLKDARRVADQLGIPHYVVN 67 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHH--c---CCcEEEEEEecccccccccCCCCHHHHHHHHHHHHHhCCcEEEEE
Confidence 6888899863 3 44444433 2 45777775543210 0 1347889999999998776
No 438
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.86 E-value=5.1e+02 Score=24.60 Aligned_cols=77 Identities=12% Similarity=0.245 Sum_probs=46.3
Q ss_pred HHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCCEEEEe-ccccccCh
Q 020508 141 CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLA-RYMQILSG 219 (325)
Q Consensus 141 ~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dliv~~-g~~~il~~ 219 (325)
...+||+...- ++...-+.|+- +...-+.|+..+..+.|--+....++ ...+.+.++++|++|++ |-..++++
T Consensus 143 avi~lL~~~~i-~l~Gk~vvVvG-rS~iVGkPla~lL~~~~atVtichs~----T~~l~~~~~~ADIvI~AvG~~~~i~~ 216 (284)
T PRK14170 143 GIIELIKSTGT-QIEGKRAVVIG-RSNIVGKPVAQLLLNENATVTIAHSR----TKDLPQVAKEADILVVATGLAKFVKK 216 (284)
T ss_pred HHHHHHHHhCC-CCCCCEEEEEC-CCCcchHHHHHHHHHCCCEEEEeCCC----CCCHHHHHhhCCEEEEecCCcCccCH
Confidence 34556665432 23233344554 43334678888888888777654422 12344556689998887 77888888
Q ss_pred hHHh
Q 020508 220 KFLR 223 (325)
Q Consensus 220 ~~l~ 223 (325)
+.+.
T Consensus 217 ~~vk 220 (284)
T PRK14170 217 DYIK 220 (284)
T ss_pred HHcC
Confidence 8764
No 439
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=28.75 E-value=6.1e+02 Score=25.48 Aligned_cols=210 Identities=11% Similarity=0.124 Sum_probs=95.6
Q ss_pred hHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCC-hHHHHHHH-HhhhhhhcccceeeeecCCCCCceEE
Q 020508 55 IVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWP-REQMDEDF-FKLSKMFNAMRSVVRVPDIDPKYKVA 132 (325)
Q Consensus 55 IVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~-~~~L~~~l-~~l~~~l~~~~~~~~~~~~~~~~ri~ 132 (325)
.+.++-..|-+.++|..-....+....... ..-.++. ..+ ...+...+ +++.+-++-....+... ..+.++.
T Consensus 29 ~l~ei~~~Ll~aDV~~~~v~~~~~~i~~~~---~~~~~~~-~~~~~~~~~~~v~~eL~~~l~~~~~~~~~~--~~~p~vi 102 (428)
T TIGR00959 29 ALREIRLALLEADVNLQVVKDFIKKVKEKA---LGQEVLK-SLSPGQQFIKIVHEELVAILGGENASLNLA--KKPPTVI 102 (428)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHh---ccccccc-cCCcHHHHHHHHHHHHHHHhCCCCcccccC--CCCCEEE
Confidence 367788888888888765444432111100 0111222 222 23333333 34444454432212221 1234555
Q ss_pred EEEe--CCc--hHHHHHHHHhh-cCCCCceEEEEEeCCCCCC-CchHHHHHHHCCCCEEEecCCCChhH--HHHHHHhc-
Q 020508 133 VLAS--KQE--HCLVDFLYGWQ-EGKLPVEITCVISNHDRGP-NSHVIRFLERHGIPYHYLCAKENERE--EELLELVQ- 203 (325)
Q Consensus 133 v~~S--g~g--~~l~~Ll~~~~-~~~l~~~I~~Vvt~~~~~~-~~~~~~~a~~~gIp~~~~~~~~~~~~--~~~~~~l~- 203 (325)
+|+. |.| +....|..++. .. +..+..|-++.-++. ...+..+|++.|+|++......+..+ .+.++.+.
T Consensus 103 ~~vG~~GsGKTTtaakLA~~l~~~~--g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~~ 180 (428)
T TIGR00959 103 LMVGLQGSGKTTTCGKLAYYLKKKQ--GKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAKE 180 (428)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHhC--CCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHh
Confidence 5553 333 33344444432 11 245555555443221 12356789999999986542111110 12233332
Q ss_pred -CCCEEEEecccccc-ChhHHhhc---CCCEEEEcCCC--CCCCCCCcHHHHHHH--hCCcEeEEEEEEecCCCCCCCe
Q 020508 204 -NTDFLVLARYMQIL-SGKFLRSY---GKDVINIHHGL--LPSFKGGKPAKQAFD--AGVKLIGATSHFVTEELDAGPI 273 (325)
Q Consensus 204 -~~Dliv~~g~~~il-~~~~l~~~---~~~~iNiHpsl--LP~yRG~~pi~~ai~--~G~~~~GvTvh~v~~~~D~G~I 273 (325)
+.|++++=.-++.- ++..++.. . ..++-+.-+ +...-|...+.+|-. .....+|+=+=.+|+..-.|.+
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~-~~~~p~e~lLVvda~tgq~~~~~a~~f~~~v~i~giIlTKlD~~~~~G~~ 258 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIK-EILNPDEILLVVDAMTGQDAVNTAKTFNERLGLTGVVLTKLDGDARGGAA 258 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHH-HhhCCceEEEEEeccchHHHHHHHHHHHhhCCCCEEEEeCccCcccccHH
Confidence 68999987766543 34444322 1 112111111 233456666666533 3345566655566554445543
No 440
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=28.66 E-value=1.2e+02 Score=26.21 Aligned_cols=121 Identities=11% Similarity=0.080 Sum_probs=66.9
Q ss_pred CChHHHHHHHHhhhhhhcccceeeeecCCCCCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCC-CCCCCchHHH
Q 020508 97 WPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH-DRGPNSHVIR 175 (325)
Q Consensus 97 ~~~~~L~~~l~~l~~~l~~~~~~~~~~~~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~-~~~~~~~~~~ 175 (325)
.+.+.+...+-++..++..... ...++.|.++|. .||++..- +.... .. -+..+.+ .+-.=..+.+
T Consensus 14 ~~~~~i~~~~i~i~N~~~~~~~-----~~~~~~~~lill---PhClq~~~--C~~k~-t~--~g~~C~~Cg~C~Ig~l~~ 80 (158)
T PF01976_consen 14 IDKDHIDRIFIEINNRLVRSDF-----KKIPPEKRLILL---PHCLQNSD--CPAKI-TS--DGYNCKRCGKCDIGDLKK 80 (158)
T ss_pred CCHHHHHHHHHHHhhHHHHHhh-----hcCCcccEEEEC---hhhCCCCC--CCCcc-CC--CCCcCCCCCCCchhHHHH
Confidence 4456677777777776644321 112345667776 78876421 32110 00 0011111 0000135799
Q ss_pred HHHHCCCCEEEecCCCChhHHHHHHHhc--CCCEEEEeccccccChhHHhhcC-----CCEEEEcCC
Q 020508 176 FLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVLARYMQILSGKFLRSYG-----KDVINIHHG 235 (325)
Q Consensus 176 ~a~~~gIp~~~~~~~~~~~~~~~~~~l~--~~Dliv~~g~~~il~~~~l~~~~-----~~~iNiHps 235 (325)
+|+++|+.++.++. +.-+.+.++ +||.++-+++.+-|.+.+....+ .|++|..|+
T Consensus 81 lae~~g~~v~i~~G-----gt~ar~~ik~~~p~~iigVAC~~dL~~g~~~~~~~~ip~~gV~l~~~g 142 (158)
T PF01976_consen 81 LAEKYGYKVYIATG-----GTLARKIIKEYRPKAIIGVACERDLISGIQDLKPLGIPVQGVLLDRPG 142 (158)
T ss_pred HHHHcCCEEEEEcC-----hHHHHHHHHHhCCCEEEEEechHHHHHHHHHHhhcCCCeeEEEeCCCC
Confidence 99999999998771 122333444 89999988887776666655443 455665554
No 441
>PRK14433 acylphosphatase; Provisional
Probab=28.64 E-value=1.7e+02 Score=22.41 Aligned_cols=60 Identities=15% Similarity=0.092 Sum_probs=43.2
Q ss_pred HHHHHHHhhhhhhcccceeeeecCCCCCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeC
Q 020508 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (325)
Q Consensus 101 ~L~~~l~~l~~~l~~~~~~~~~~~~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~ 164 (325)
-+|.-...+|.++|+.-|..-.++ -.|-+.+.|....++.+++.++++...++|..|-..
T Consensus 15 GFR~~v~~~A~~~~l~G~V~N~~d----G~Vei~~~G~~~~i~~f~~~l~~gP~~a~V~~i~~~ 74 (87)
T PRK14433 15 GYRAFVQKKARELGLSGYAENLSD----GRVEVVAEGPKEALERLLHWLRRGPRHARVEAVDVQ 74 (87)
T ss_pred CchHHHHHHHHHcCCEEEEEECCC----CCEEEEEEECHHHHHHHHHHHhhCCCCcEEEEEEEE
Confidence 366777788999999987433333 257777888888899999988866545777766543
No 442
>PF11039 DUF2824: Protein of unknown function (DUF2824); InterPro: IPR022568 This family of proteins has no known function. Members of the family are found in P22-like viruses and bacteria. Some of the phage members have been annotated as head assembly proteins, but this has not been confirmed.
Probab=28.64 E-value=63 Score=27.30 Aligned_cols=52 Identities=17% Similarity=0.186 Sum_probs=39.6
Q ss_pred CCCEEEEcCCCCCCCCCCcH----HHHHHHhCCcEeEEEEEEecCCCCCCCeEEEE
Q 020508 226 GKDVINIHHGLLPSFKGGKP----AKQAFDAGVKLIGATSHFVTEELDAGPIIEQM 277 (325)
Q Consensus 226 ~~~~iNiHpslLP~yRG~~p----i~~ai~~G~~~~GvTvh~v~~~~D~G~Ii~Q~ 277 (325)
....+-.|+=.+|.|||-+- .+|-++---..+-+++-++-+..--|.||.|-
T Consensus 59 ~~~~vecHa~y~P~fRG~a~~~~~~F~kwlL~Ns~f~~vit~vp~kt~~Grvic~l 114 (151)
T PF11039_consen 59 QPSVVECHAMYDPGFRGYALEIGRLFCKWLLENSPFQNVITFVPDKTRYGRVICRL 114 (151)
T ss_pred eeeeEEEEeeeccccchhHHHHHHHHHHHHhcCCceeEEEEecccccccchhHhhh
Confidence 34589999999999999432 45655544567778888888889999988764
No 443
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=28.44 E-value=3.2e+02 Score=26.05 Aligned_cols=99 Identities=12% Similarity=0.081 Sum_probs=51.4
Q ss_pred CceEEEEEeCCc--hHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHH----CCCCEEEecCCCChhHHHHHHH
Q 020508 128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLER----HGIPYHYLCAKENEREEELLEL 201 (325)
Q Consensus 128 ~~ri~v~~Sg~g--~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~----~gIp~~~~~~~~~~~~~~~~~~ 201 (325)
..+++++++|.- ..+..|... . +.+-+.|+ ++.. ....++|++ +|+++...+ ++.+.
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~---~--~i~~v~V~-~R~~---~~a~~~a~~~~~~~g~~v~~~~--------~~~~a 191 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLV---R--DIRSARIW-ARDS---AKAEALALQLSSLLGIDVTAAT--------DPRAA 191 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHh---C--CccEEEEE-CCCH---HHHHHHHHHHHhhcCceEEEeC--------CHHHH
Confidence 468999988852 233444321 1 23334444 4531 233444443 477665433 12344
Q ss_pred hcCCCEEEEeccc--cccChhHHhhcCCCEEEEcCCCCCCCCCCcH
Q 020508 202 VQNTDFLVLARYM--QILSGKFLRSYGKDVINIHHGLLPSFKGGKP 245 (325)
Q Consensus 202 l~~~Dliv~~g~~--~il~~~~l~~~~~~~iNiHpslLP~yRG~~p 245 (325)
++++|+|+++.-. .+++.+.++ ++..++.=.+.+|.-|-..|
T Consensus 192 v~~aDiVvtaT~s~~p~i~~~~l~--~g~~i~~vg~~~p~~rEld~ 235 (326)
T TIGR02992 192 MSGADIIVTTTPSETPILHAEWLE--PGQHVTAMGSDAEHKNEIDP 235 (326)
T ss_pred hccCCEEEEecCCCCcEecHHHcC--CCcEEEeeCCCCCCceecCH
Confidence 5589999998643 344444432 33355544556666665544
No 444
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=28.42 E-value=2e+02 Score=27.90 Aligned_cols=72 Identities=15% Similarity=0.203 Sum_probs=38.9
Q ss_pred eEEEEE---------eCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCC--CchH-HHHHHHCCCCEEEecCCCChhHHH
Q 020508 130 KVAVLA---------SKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP--NSHV-IRFLERHGIPYHYLCAKENEREEE 197 (325)
Q Consensus 130 ri~v~~---------Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~--~~~~-~~~a~~~gIp~~~~~~~~~~~~~~ 197 (325)
|+.||. +|.|+.+..|..+.+.|. ... .+++ ..+|. +..+ .....+.|||+..+.. ..
T Consensus 147 ~~~ILThcnsg~lat~~~gtal~~l~~A~~~g~-~~~--V~v~-EsrP~~qG~rlta~~L~~~GI~vtlI~D------sa 216 (331)
T TIGR00512 147 PLRVLTHCNTGSLATAGYGTALGVIRSAHEKGR-LEH--VYAD-ETRPRLQGARLTAWELVQEGIPATLITD------SM 216 (331)
T ss_pred CceEEeecCCccccccccchHHHHHHHHHHcCC-ceE--EEEC-CCCchhhHHHHHHHHHHHCCCCEEEEcc------cH
Confidence 556666 234566666666655553 233 2333 22222 2222 3446788999998761 12
Q ss_pred HHHHhc--CCCEEEEe
Q 020508 198 LLELVQ--NTDFLVLA 211 (325)
Q Consensus 198 ~~~~l~--~~Dliv~~ 211 (325)
+-..++ ++|.+++.
T Consensus 217 v~~~m~~~~vd~VivG 232 (331)
T TIGR00512 217 AAHLMKHGEVDAVIVG 232 (331)
T ss_pred HHHHhcccCCCEEEEc
Confidence 334444 68888864
No 445
>PRK00536 speE spermidine synthase; Provisional
Probab=28.41 E-value=87 Score=29.36 Aligned_cols=96 Identities=9% Similarity=0.069 Sum_probs=52.5
Q ss_pred CCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEE--ec-CCCChhHHHHHHHh-
Q 020508 127 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHY--LC-AKENEREEELLELV- 202 (325)
Q Consensus 127 ~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~--~~-~~~~~~~~~~~~~l- 202 (325)
+++||.|+|.|.|..++++++. + .+|+.|=-+ ..+.+.|+++ .|... ++ .+.+... .+.+.-
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh---~---~~v~mVeID------~~Vv~~~k~~-lP~~~~~~~DpRv~l~~-~~~~~~~ 137 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKY---D---THVDFVQAD------EKILDSFISF-FPHFHEVKNNKNFTHAK-QLLDLDI 137 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCc---C---CeeEEEECC------HHHHHHHHHH-CHHHHHhhcCCCEEEee-hhhhccC
Confidence 4689999999999999999975 1 245444332 3578888885 33211 11 0000000 111111
Q ss_pred cCCCEEEEeccccccChhHHhhc-----CCCEEEEcCCCCCCC
Q 020508 203 QNTDFLVLARYMQILSGKFLRSY-----GKDVINIHHGLLPSF 240 (325)
Q Consensus 203 ~~~Dliv~~g~~~il~~~~l~~~-----~~~~iNiHpslLP~y 240 (325)
++.|+|++-+. .++++.+.. +.|++-.+.+ -|.|
T Consensus 138 ~~fDVIIvDs~---~~~~fy~~~~~~L~~~Gi~v~Qs~-sp~~ 176 (262)
T PRK00536 138 KKYDLIICLQE---PDIHKIDGLKRMLKEDGVFISVAK-HPLL 176 (262)
T ss_pred CcCCEEEEcCC---CChHHHHHHHHhcCCCcEEEECCC-Cccc
Confidence 15898888742 445554322 4566666644 3444
No 446
>KOG1905 consensus Class IV sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=28.36 E-value=20 Score=34.33 Aligned_cols=59 Identities=20% Similarity=0.253 Sum_probs=39.8
Q ss_pred HHHHHHhc-CCCEEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhCCcEeEEEEEEecCCCCC
Q 020508 196 EELLELVQ-NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDA 270 (325)
Q Consensus 196 ~~~~~~l~-~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvh~v~~~~D~ 270 (325)
+++.++++ .--++|..|-+ | --.+.+|.|||+..++--...|...++++++.....+-.
T Consensus 46 ~elA~li~~sk~lvv~tGAG-I---------------STaa~IPDfRGp~GVWTL~~kG~~~~~~df~~ArPt~TH 105 (353)
T KOG1905|consen 46 EELAQLIQQSKHLVVYTGAG-I---------------STAAGIPDFRGPQGVWTLQQKGKDKFGVDFSEARPTVTH 105 (353)
T ss_pred HHHHHHHhhCCcEEEEeCCc-c---------------ccccCCCCccCCCceeehhhcCccccCCchhhcCCcchH
Confidence 35555555 44566655543 1 125689999999998555678888888888877665433
No 447
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=28.20 E-value=3.6e+02 Score=25.46 Aligned_cols=71 Identities=14% Similarity=0.133 Sum_probs=38.1
Q ss_pred EEE-eCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCCEEEEe
Q 020508 133 VLA-SKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLA 211 (325)
Q Consensus 133 v~~-Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dliv~~ 211 (325)
|+. |.+++.+..|..+.++|. ..+|...=| ++...+..+.....+.|||+..+.. ..+-..++++|.+++.
T Consensus 113 ILTh~~S~tv~~~l~~A~~~gk-~~~V~v~Es-rP~~qG~~la~eL~~~GI~vtlI~D------sa~~~~m~~vd~VivG 184 (275)
T PRK08335 113 IITHSFSSAVLEILKTAKRKGK-RFKVILTES-APDYEGLALANELEFLGIEFEVITD------AQLGLFAKEATLALVG 184 (275)
T ss_pred EEEECCcHHHHHHHHHHHHcCC-ceEEEEecC-CCchhHHHHHHHHHHCCCCEEEEec------cHHHHHHHhCCEEEEC
Confidence 444 334566666666655554 344432222 2222344555556778999988761 1223334468887763
No 448
>PRK06823 ornithine cyclodeaminase; Validated
Probab=28.08 E-value=4.1e+02 Score=25.37 Aligned_cols=102 Identities=8% Similarity=0.047 Sum_probs=58.9
Q ss_pred CceEEEEEeCCc--hHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCC
Q 020508 128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (325)
Q Consensus 128 ~~ri~v~~Sg~g--~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 205 (325)
..++++|++|.- +.++.+... . +.+=+.|...... ....+.+.+++.|+++...+ +..+.++++
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v-~----~i~~v~v~~r~~~-~a~~~~~~~~~~~~~v~~~~--------~~~~av~~A 193 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNV-T----DCRQLWVWGRSET-ALEEYRQYAQALGFAVNTTL--------DAAEVAHAA 193 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhc-C----CCCEEEEECCCHH-HHHHHHHHHHhcCCcEEEEC--------CHHHHhcCC
Confidence 469999998852 444544432 1 2333445543221 11223445555588876443 123445689
Q ss_pred CEEEEecc--ccccChhHHhhcCCCEEEEcCCCCCCCCCCcH
Q 020508 206 DFLVLARY--MQILSGKFLRSYGKDVINIHHGLLPSFKGGKP 245 (325)
Q Consensus 206 Dliv~~g~--~~il~~~~l~~~~~~~iNiHpslLP~yRG~~p 245 (325)
|+|+++.- .-+++.+.+. ++-.||.=.|..|..|-..|
T Consensus 194 DIV~taT~s~~P~~~~~~l~--~G~hi~~iGs~~p~~~Eld~ 233 (315)
T PRK06823 194 NLIVTTTPSREPLLQAEDIQ--PGTHITAVGADSPGKQELDA 233 (315)
T ss_pred CEEEEecCCCCceeCHHHcC--CCcEEEecCCCCcccccCCH
Confidence 99999754 2345544443 45678888888888777665
No 449
>COG2921 Uncharacterized conserved protein [Function unknown]
Probab=28.07 E-value=2.7e+02 Score=21.78 Aligned_cols=70 Identities=10% Similarity=-0.003 Sum_probs=47.7
Q ss_pred CcceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeecc-CCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhh
Q 020508 39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP-EKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (325)
Q Consensus 39 ~~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~-~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~ 111 (325)
.+-.+.+.++|.-+|++...|-+++..++-.-..=+.... ...|.|. -+.+.+-. .+.++++..-.+|++
T Consensus 12 FPc~F~~KVmG~a~~~l~~~vv~vvqr~ap~~~~~~~~~k~SSkGnY~-svsI~i~A--~~~EQ~e~ly~eL~~ 82 (90)
T COG2921 12 FPCTFTYKVMGAAGPELEDQVVEVVQRHAPGDYTPRVSWKPSSKGNYL-SVSITIRA--TNIEQVEALYRELRK 82 (90)
T ss_pred CCccceeeehcccchhHHHHHHHHHHHHCCcccCceeeeccCCCCceE-EEEEEEEE--CCHHHHHHHHHHHhh
Confidence 3456889999999999999999999998766544333222 2346554 33444433 468888887777664
No 450
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=28.07 E-value=1.7e+02 Score=34.44 Aligned_cols=38 Identities=13% Similarity=-0.043 Sum_probs=33.6
Q ss_pred CcceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeee
Q 020508 39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF 76 (325)
Q Consensus 39 ~~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~ 76 (325)
...+.+|+++.+|.|=+|..|+..|.++|..|.-+..-
T Consensus 14 ~~~~TvI~IV~dDmPFLVDSV~~~L~r~gl~I~~i~HP 51 (1528)
T PF05088_consen 14 ESDHTVIEIVTDDMPFLVDSVRMELNRQGLTIHLIIHP 51 (1528)
T ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHhCCCceEEEecC
Confidence 34588999999999999999999999999999876654
No 451
>PRK14423 acylphosphatase; Provisional
Probab=27.91 E-value=2.2e+02 Score=22.05 Aligned_cols=59 Identities=10% Similarity=0.008 Sum_probs=42.4
Q ss_pred HHHHHHHhhhhhhcccceeeeecCCCCCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEe
Q 020508 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (325)
Q Consensus 101 ~L~~~l~~l~~~l~~~~~~~~~~~~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt 163 (325)
-+|.-...+|.++|+.-|..-.++ -+|-+.+.|....+..+++.++.+...+.|..+-.
T Consensus 19 GFR~~v~~~A~~lgl~G~V~N~~d----G~Vei~~~G~~~~i~~f~~~l~~gp~~a~V~~v~~ 77 (92)
T PRK14423 19 YYRASTRDTARELGVDGWVRNLDD----GRVEAVFEGPRDAVEAMVEWCHEGSPAAVVEDVEV 77 (92)
T ss_pred eehHHHHHHHHHcCCEEEEEECCC----CeEEEEEEECHHHHHHHHHHHHhCCCceEEEEEEE
Confidence 367777788999999987544433 35777778888889999998876544566666543
No 452
>PRK07714 hypothetical protein; Provisional
Probab=27.80 E-value=2.6e+02 Score=21.83 Aligned_cols=28 Identities=7% Similarity=0.081 Sum_probs=19.8
Q ss_pred chHHHHHHHCCCCEEEecCCCChhHHHHHHHhc
Q 020508 171 SHVIRFLERHGIPYHYLCAKENEREEELLELVQ 203 (325)
Q Consensus 171 ~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 203 (325)
..+..+|+.++||++.+.+ .+|+-..+.
T Consensus 50 ~ki~~~~~~~~vp~~~~~s-----k~eLG~a~G 77 (100)
T PRK07714 50 KKITDKCTYYNVPMRKVEN-----RQQLGHAIG 77 (100)
T ss_pred HHHHHHHHhcCCCEEEeCC-----HHHHHHHhC
Confidence 4578889999999986652 245666664
No 453
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=27.69 E-value=2.3e+02 Score=25.78 Aligned_cols=168 Identities=15% Similarity=0.150 Sum_probs=82.3
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCC----CCC---chHHHHHHHCCCCEEEecCCCChhHHHHH
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDR----GPN---SHVIRFLERHGIPYHYLCAKENEREEELL 199 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~----~~~---~~~~~~a~~~gIp~~~~~~~~~~~~~~~~ 199 (325)
.+||+|.+.|. |..+..+|.. . +.+|++|. +... +.+ ..+.++.++.|-=. .++.......+++.
T Consensus 31 ~~~v~I~G~G~VG~~~a~~L~~--~---g~~vv~v~-D~~g~~~~~~Gld~~~l~~~~~~~g~l~-~~~~~~~~~~~~i~ 103 (227)
T cd01076 31 GARVAIQGFGNVGSHAARFLHE--A---GAKVVAVS-DSDGTIYNPDGLDVPALLAYKKEHGSVL-GFPGAERITNEELL 103 (227)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--C---CCEEEEEE-CCCCeEECCCCCCHHHHHHHHHhcCCcc-cCCCceecCCccce
Confidence 57999866554 4555444432 1 47777663 3310 011 23444545554111 11100000011222
Q ss_pred HHhcCCCEEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhCCcEeEEEEEEecCCCCCCCeEEEEEE
Q 020508 200 ELVQNTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVE 279 (325)
Q Consensus 200 ~~l~~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvh~v~~~~D~G~Ii~Q~~~ 279 (325)
.. ++|+++-+.....++.+-...++-++| +=.+..|-- |-...++. +-|+++ .-|--.-+|-++... +
T Consensus 104 ~~--~~Dvlip~a~~~~i~~~~~~~l~a~~I-~egAN~~~t----~~a~~~L~---~rGi~~-~PD~~aNaGGvi~s~-~ 171 (227)
T cd01076 104 EL--DCDILIPAALENQITADNADRIKAKII-VEAANGPTT----PEADEILH---ERGVLV-VPDILANAGGVTVSY-F 171 (227)
T ss_pred ee--cccEEEecCccCccCHHHHhhceeeEE-EeCCCCCCC----HHHHHHHH---HCCCEE-EChHHhcCcchhhhH-H
Confidence 22 899999999999999999998875554 555555552 22222221 113332 223335556665411 1
Q ss_pred eC-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCce
Q 020508 280 RV-----SHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRV 314 (325)
Q Consensus 280 ~I-----~~~dt~~~l~~r~~~~~~~ll~~al~~i~~g~~ 314 (325)
.. ....+.+++.+++.+.-...+.+.++.-.+...
T Consensus 172 E~~~~~~~~~~~~~~v~~~l~~~i~~~~~~v~~~a~~~~~ 211 (227)
T cd01076 172 EWVQNLQGFYWDEEEVNSRLETKMREAFEAVLETAEKYGV 211 (227)
T ss_pred HHhhhhccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 11 112355666677665555555555555444333
No 454
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=27.62 E-value=90 Score=25.41 Aligned_cols=35 Identities=14% Similarity=0.146 Sum_probs=23.6
Q ss_pred ceEEEEEeCCchHHH--HHHHHhhcCCCCceEEEEEeCC
Q 020508 129 YKVAVLASKQEHCLV--DFLYGWQEGKLPVEITCVISNH 165 (325)
Q Consensus 129 ~ri~v~~Sg~g~~l~--~Ll~~~~~~~l~~~I~~Vvt~~ 165 (325)
|||++.+||.....+ .++.++++. +++|..|+|..
T Consensus 1 k~i~l~vtGs~~~~~~~~~l~~L~~~--g~~v~vv~S~~ 37 (129)
T PF02441_consen 1 KRILLGVTGSIAAYKAPDLLRRLKRA--GWEVRVVLSPS 37 (129)
T ss_dssp -EEEEEE-SSGGGGGHHHHHHHHHTT--TSEEEEEESHH
T ss_pred CEEEEEEECHHHHHHHHHHHHHHhhC--CCEEEEEECCc
Confidence 589999999876543 566666554 57888778754
No 455
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=27.58 E-value=3e+02 Score=26.06 Aligned_cols=51 Identities=22% Similarity=0.250 Sum_probs=35.2
Q ss_pred EEeCCc----hHHHHHHHHhhcCCCCceEEEEEeCCCCC----CCchHHHHHHHCCCCEEEec
Q 020508 134 LASKQE----HCLVDFLYGWQEGKLPVEITCVISNHDRG----PNSHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 134 ~~Sg~g----~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~----~~~~~~~~a~~~gIp~~~~~ 188 (325)
+.|-.. .....|+..++.| +-+++||+--.| ++..+.+.|.++||+|..+|
T Consensus 55 ~is~h~hne~~~~~~li~~l~~g----~~valVSDAG~P~ISDPG~~LV~~a~~~gi~V~~lP 113 (275)
T COG0313 55 LISYHEHNEKEKLPKLIPLLKKG----KSVALVSDAGTPLISDPGYELVRAAREAGIRVVPLP 113 (275)
T ss_pred eecccCCcHHHHHHHHHHHHhcC----CeEEEEecCCCCcccCccHHHHHHHHHcCCcEEecC
Confidence 455443 3455566666655 357888876443 25668999999999999887
No 456
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.57 E-value=1.5e+02 Score=24.79 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=23.9
Q ss_pred EEEEeCCCCCC------CchHHHHHHHCCCCEEEec
Q 020508 159 TCVISNHDRGP------NSHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 159 ~~Vvt~~~~~~------~~~~~~~a~~~gIp~~~~~ 188 (325)
..||+|+++.. .....+.|++.|+.+.++|
T Consensus 30 ksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iP 65 (130)
T COG3453 30 KSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIP 65 (130)
T ss_pred ceecccCCCCCCCCCCChHHHHHHHHhcCCceEEee
Confidence 46888887643 2458899999999999998
No 457
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.57 E-value=6.6e+02 Score=25.43 Aligned_cols=250 Identities=9% Similarity=0.142 Sum_probs=134.5
Q ss_pred hHHHHHHHHHhcCCeEeEeeeeccCCC-CeEEEEEEEEeCCCCCChHHH--HHHHHhhhhhhcccceeeeecCCCCCceE
Q 020508 55 IVAKLSECIASRGGNILAADVFVPEKK-NVFYSRSEFIFDPIKWPREQM--DEDFFKLSKMFNAMRSVVRVPDIDPKYKV 131 (325)
Q Consensus 55 IVa~Vt~~La~~giNI~~l~~~~~~~~-g~F~~~~~v~~p~~~~~~~~L--~~~l~~l~~~l~~~~~~~~~~~~~~~~ri 131 (325)
...+|++.|-+.++|+-=......... -.-.. .++. +.+...+ ..-|++||+-++-..+.+. ....+..|
T Consensus 31 ~L~eI~~ALLesDV~~~lV~~l~~nir~~i~~~----~~~~-G~nk~r~i~~~vf~eL~kl~dp~~~~~~--~~K~kpsV 103 (483)
T KOG0780|consen 31 MLKEICRALLESDVNPRLVKELRENIRKIINLE----KLAS-GVNKRRIIQKAVFDELVKLLDPGKSALQ--PKKGKPSV 103 (483)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHhchh----hhcc-ccCHHHHHHHHHHHHHHHHhCCCCcccc--cccCCCcE
Confidence 678899999888888764333221000 01111 1122 2333322 2345677776655433222 22234456
Q ss_pred EEEEe----CCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCC-chHHHHHHHCCCCEEEecCCCCh--hHHHHHHHhc-
Q 020508 132 AVLAS----KQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPN-SHVIRFLERHGIPYHYLCAKENE--REEELLELVQ- 203 (325)
Q Consensus 132 ~v~~S----g~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~-~~~~~~a~~~gIp~~~~~~~~~~--~~~~~~~~l~- 203 (325)
..|+- |.-+.+-.+..+++.. +..++.|+.+.=++.. ..+.+.|.+.+||++---+.... -..+=++..+
T Consensus 104 imfVGLqG~GKTTtc~KlA~y~kkk--G~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKk 181 (483)
T KOG0780|consen 104 IMFVGLQGSGKTTTCTKLAYYYKKK--GYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKK 181 (483)
T ss_pred EEEEeccCCCcceeHHHHHHHHHhc--CCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHh
Confidence 66653 2223334444444443 3566666665533222 45889999999999742111100 0012223333
Q ss_pred -CCCEEEEeccccc-cChhHHhhc--------CCC-EEEEcCCCCCCCCCCcHH--HHHHHhCCcEeEEEEEEecCCCCC
Q 020508 204 -NTDFLVLARYMQI-LSGKFLRSY--------GKD-VINIHHGLLPSFKGGKPA--KQAFDAGVKLIGATSHFVTEELDA 270 (325)
Q Consensus 204 -~~Dliv~~g~~~i-l~~~~l~~~--------~~~-~iNiHpslLP~yRG~~pi--~~ai~~G~~~~GvTvh~v~~~~D~ 270 (325)
++|+|++-.-+|. ...++.+.. +.- ++-+..| -|-++- ..|+..-...+++-+-++|...-.
T Consensus 182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDas-----iGQaae~Qa~aFk~~vdvg~vIlTKlDGhakG 256 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDAS-----IGQAAEAQARAFKETVDVGAVILTKLDGHAKG 256 (483)
T ss_pred cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecc-----ccHhHHHHHHHHHHhhccceEEEEecccCCCC
Confidence 7999998765443 333333322 111 2222222 465544 445666667788888888877666
Q ss_pred CCeEEEEE---EeC------------CCC------------CCHHHHHHHHHHHHHHHHHHHHHHHHhCceeeec
Q 020508 271 GPIIEQMV---ERV------------SHR------------DNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYE 318 (325)
Q Consensus 271 G~Ii~Q~~---~~I------------~~~------------dt~~~l~~r~~~~~~~ll~~al~~i~~g~~~~~~ 318 (325)
|--|.-.. .|| ++- -+.+.|.+++.++..+--.+.+++|..|++++++
T Consensus 257 GgAlSaVaaTksPIiFIGtGEhmdDlE~F~pk~FvsrlLGmGDi~glvek~~ev~~~d~~el~~kl~~gkFtlrd 331 (483)
T KOG0780|consen 257 GGALSAVAATKSPIIFIGTGEHMDDLEPFDPKPFVSRLLGMGDIEGLVEKVQEVGKDDAKELVEKLKQGKFTLRD 331 (483)
T ss_pred CceeeehhhhCCCEEEEecCccccccCCCChHHHHHHHhccccHHHHHHHHHHHhhhhHHHHHHHHHhCCccHHH
Confidence 65443321 111 110 2477888999998877888999999999998763
No 458
>PRK14429 acylphosphatase; Provisional
Probab=27.51 E-value=2.5e+02 Score=21.60 Aligned_cols=59 Identities=14% Similarity=0.110 Sum_probs=42.8
Q ss_pred HHHHHHHhhhhhhcccceeeeecCCCCCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEe
Q 020508 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (325)
Q Consensus 101 ~L~~~l~~l~~~l~~~~~~~~~~~~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt 163 (325)
-+|.-...+|.++|+.-|..-.++ -.|-+.+.|....++++++.++++...++|.-+-.
T Consensus 16 GFR~~v~~~A~~~gl~G~V~N~~d----G~Vei~~qG~~~~i~~f~~~l~~gp~~a~V~~i~~ 74 (90)
T PRK14429 16 GCRRATLTKARALGVTGYVTNCED----GSVEILAQGSDPAVDNLIAWCEVGVPCTEVLRVTV 74 (90)
T ss_pred eeHHHHHHHHHHhCCEEEEEECCC----CeEEEEEEeCHHHHHHHHHHHhhCCCceEEEEEEE
Confidence 367777788999999987533332 36788889988889999999877643466666544
No 459
>PF04705 TSNR_N: Thiostrepton-resistance methylase, N terminus; InterPro: IPR006795 This region is found in some members of the SpoU-type rRNA methylase family (IPR001537 from INTERPRO).; GO: 0008649 rRNA methyltransferase activity, 0046677 response to antibiotic; PDB: 3GYQ_B 3NK6_A 3NK7_A.
Probab=27.51 E-value=1.1e+02 Score=24.61 Aligned_cols=61 Identities=15% Similarity=0.203 Sum_probs=34.5
Q ss_pred HHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhc----CCCEEEEec
Q 020508 142 LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ----NTDFLVLAR 212 (325)
Q Consensus 142 l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~----~~Dliv~~g 212 (325)
.+-|.+.+..| .|...|......+-+..+.+.|++.|||+..++ ..+.+.|. +++..=++.
T Consensus 37 ~EPL~~~i~AG---vefieVYg~~~~p~~~~ll~~c~~r~Ipvrlv~-------~~v~N~lFk~erK~k~fGiAr 101 (115)
T PF04705_consen 37 PEPLTHSIRAG---VEFIEVYGSDGSPVPPELLAACRQRGIPVRLVD-------SAVVNQLFKGERKPKVFGIAR 101 (115)
T ss_dssp HHHHHHHHCTT----EEEEEEEETTS---CCCCHHHHCTT--EEEE--------HHHHCCCS-SSS--SEEEEEE
T ss_pred chHHHHHHhcC---cEEEEEeeecCCCCChHHHHHHHhcCCceEEec-------HHHHHHHHhcccccceeeeec
Confidence 35566666654 677788765544445678999999999998776 23444442 577665553
No 460
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=27.50 E-value=1.2e+02 Score=24.13 Aligned_cols=49 Identities=12% Similarity=0.224 Sum_probs=29.7
Q ss_pred HHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCCEEEEeccccccChhHHhhc
Q 020508 173 VIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQILSGKFLRSY 225 (325)
Q Consensus 173 ~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dliv~~g~~~il~~~~l~~~ 225 (325)
+.++|+++|+++.... ....++.+.+.+.|++++.-=-+..-+++-+..
T Consensus 20 m~~~a~~~gi~~~i~a----~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~ 68 (99)
T cd05565 20 LNKGAKERGVPLEAAA----GAYGSHYDMIPDYDLVILAPQMASYYDELKKDT 68 (99)
T ss_pred HHHHHHHCCCcEEEEE----eeHHHHHHhccCCCEEEEcChHHHHHHHHHHHh
Confidence 6788899999986443 123345555557898888754333334444433
No 461
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=27.48 E-value=1.8e+02 Score=26.37 Aligned_cols=70 Identities=14% Similarity=0.171 Sum_probs=38.1
Q ss_pred ceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHH-HHHHCCCCEEEecCCCChhHHHHHHHhc--C
Q 020508 129 YKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIR-FLERHGIPYHYLCAKENEREEELLELVQ--N 204 (325)
Q Consensus 129 ~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~-~a~~~gIp~~~~~~~~~~~~~~~~~~l~--~ 204 (325)
||+++++-|. |..+...|.. . +++++.|-.+++ .+.+ .+.+.+..++..+ ..+++.++.+. +
T Consensus 1 m~iiIiG~G~vG~~va~~L~~--~---g~~Vv~Id~d~~-----~~~~~~~~~~~~~~v~gd----~t~~~~L~~agi~~ 66 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSE--E---GHNVVLIDRDEE-----RVEEFLADELDTHVVIGD----ATDEDVLEEAGIDD 66 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHh--C---CCceEEEEcCHH-----HHHHHhhhhcceEEEEec----CCCHHHHHhcCCCc
Confidence 5788888775 5555444432 1 578888877653 2333 2334555555443 12234444443 6
Q ss_pred CCEEEEec
Q 020508 205 TDFLVLAR 212 (325)
Q Consensus 205 ~Dliv~~g 212 (325)
+|.++.+-
T Consensus 67 aD~vva~t 74 (225)
T COG0569 67 ADAVVAAT 74 (225)
T ss_pred CCEEEEee
Confidence 77766654
No 462
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=27.38 E-value=1.3e+02 Score=24.77 Aligned_cols=69 Identities=16% Similarity=0.179 Sum_probs=38.3
Q ss_pred EEEEEeCCCCCCCchHHHHHHHCCCC--EEEecCCCChhHHHHHHHhcCCCEEEEeccccccChhHHhhcCCCEE
Q 020508 158 ITCVISNHDRGPNSHVIRFLERHGIP--YHYLCAKENEREEELLELVQNTDFLVLARYMQILSGKFLRSYGKDVI 230 (325)
Q Consensus 158 I~~Vvt~~~~~~~~~~~~~a~~~gIp--~~~~~~~~~~~~~~~~~~l~~~Dliv~~g~~~il~~~~l~~~~~~~i 230 (325)
+..+++... .....+...++..+++ +..+. ....+++.++++.+|++++.+...=++..+++....|+.
T Consensus 48 ~~l~i~G~~-~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~p 118 (172)
T PF00534_consen 48 YKLVIVGDG-EYKKELKNLIEKLNLKENIIFLG---YVPDDELDELYKSSDIFVSPSRNEGFGLSLLEAMACGCP 118 (172)
T ss_dssp EEEEEESHC-CHHHHHHHHHHHTTCGTTEEEEE---SHSHHHHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT-E
T ss_pred eEEEEEccc-ccccccccccccccccccccccc---cccccccccccccceeccccccccccccccccccccccc
Confidence 445555421 1124577788888874 44333 122356777777788888887665555566665544443
No 463
>PRK10799 metal-binding protein; Provisional
Probab=27.38 E-value=4.8e+02 Score=23.83 Aligned_cols=131 Identities=10% Similarity=0.022 Sum_probs=71.5
Q ss_pred ceEEEEEEc-------CCCcchHHHHHHHHHhcCCeEeEeeeecc--CCCCe-----------EE-----EEEEEEeCCC
Q 020508 41 THGIHVFHC-------PDEVGIVAKLSECIASRGGNILAADVFVP--EKKNV-----------FY-----SRSEFIFDPI 95 (325)
Q Consensus 41 ~~~~ltv~g-------~DrpGIVa~Vt~~La~~giNI~~l~~~~~--~~~g~-----------F~-----~~~~v~~p~~ 95 (325)
..++||=++ +..+|...+.-+.|.++++++...++..+ +..|. .. +-....++.
T Consensus 57 ~dlIitHHP~~~~~~~~~~~~~~~~~~~~li~~~i~vy~~Htn~D~~~~~G~n~~la~~Lgl~~~~~~~~~~~~g~l~~- 135 (247)
T PRK10799 57 ADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVMGEIEPLVPWGELTM- 135 (247)
T ss_pred CCEEEECCchhccCCCccccchHHHHHHHHHHCCCeEEEEecchhhCCCCCHHHHHHHHcCCCcccCcCCceeeEECCC-
Confidence 455666442 23456777888899999999999988764 21121 00 001123343
Q ss_pred CCChHHHHHHHHhhhhhhcccceeeeecCC--CCCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchH
Q 020508 96 KWPREQMDEDFFKLSKMFNAMRSVVRVPDI--DPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHV 173 (325)
Q Consensus 96 ~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~--~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~ 173 (325)
+.+.++|.+.++ +.|+... ...... .+-.|||++ +|+|..+ +....+. +++ +.+|-.- ...-
T Consensus 136 ~~s~~~l~~~vk---~~l~~~~--~~~~~~~~~~i~rVAi~-~GsG~~~---i~~a~~~--gaD--~~ITGd~---k~h~ 199 (247)
T PRK10799 136 PVPGLELASWIE---ARLGRKP--LWCGDTGPEVVQRVAWC-TGGGQSF---IDSAARF--GVD--AFITGEV---SEQT 199 (247)
T ss_pred CcCHHHHHHHHH---HHhCCCe--EEECCCCCCcccEEEEE-CCchHHH---HHHHHHc--CCC--EEEECCc---chHH
Confidence 455666666555 4566552 222222 234678886 5666533 2221111 234 3566432 1233
Q ss_pred HHHHHHCCCCEEEec
Q 020508 174 IRFLERHGIPYHYLC 188 (325)
Q Consensus 174 ~~~a~~~gIp~~~~~ 188 (325)
...|.+.|+.+....
T Consensus 200 ~~~A~~~gl~li~~G 214 (247)
T PRK10799 200 IHSAREQGLHFYAAG 214 (247)
T ss_pred HHHHHHCCCeEEEcC
Confidence 677899999988665
No 464
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=27.35 E-value=1.2e+02 Score=26.43 Aligned_cols=45 Identities=18% Similarity=0.242 Sum_probs=32.2
Q ss_pred EEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEec
Q 020508 134 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 134 ~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~ 188 (325)
|-...|..++.|++. +.+ ++++|-++. ..+..+|+++||+..+..
T Consensus 36 Fnv~DG~Gik~l~~~------Gi~-vAIITGr~s---~ive~Ra~~LGI~~~~qG 80 (170)
T COG1778 36 FNVRDGHGIKLLLKS------GIK-VAIITGRDS---PIVEKRAKDLGIKHLYQG 80 (170)
T ss_pred eeccCcHHHHHHHHc------CCe-EEEEeCCCC---HHHHHHHHHcCCceeeec
Confidence 334456777777654 345 578998753 468899999999988766
No 465
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=27.14 E-value=3.2e+02 Score=21.70 Aligned_cols=65 Identities=20% Similarity=0.307 Sum_probs=36.6
Q ss_pred EEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCC--chHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCCEEEEe
Q 020508 134 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPN--SHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLA 211 (325)
Q Consensus 134 ~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~--~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dliv~~ 211 (325)
++||...+ +++++.+. +.+|+...|-+.+ ..+..+|+.++||++.+.+ .+++-..+.+....+++
T Consensus 18 lv~G~~~v----~~aik~gk----~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~~t-----~~eLg~a~Gk~~~~~ia 84 (104)
T PRK05583 18 LLEGYNKC----EEAIKKKK----VYLIIISNDISENSKNKFKNYCNKYNIPYIEGYS-----KEELGNAIGRDEIKILG 84 (104)
T ss_pred eeecHHHH----HHHHHcCC----ceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEecC-----HHHHHHHhCCCCeEEEE
Confidence 55665444 44445543 4455554443222 4578889999999976541 24566666544444443
No 466
>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]
Probab=27.01 E-value=97 Score=29.76 Aligned_cols=58 Identities=12% Similarity=0.072 Sum_probs=34.1
Q ss_pred CCceEEEEEeCCchHHHH--------HHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEec
Q 020508 127 PKYKVAVLASKQEHCLVD--------FLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 127 ~~~ri~v~~Sg~g~~l~~--------Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~ 188 (325)
.+.||.+|+....+-+.. .+..+-.-+ ..+.|++..-. ....+.++|++++||+...+
T Consensus 47 ~~~riq~~G~~E~~f~~~~~~~~r~~~i~~~~~~~---~P~iI~sk~~~-~p~~l~~~a~~~~~pil~s~ 112 (308)
T COG1493 47 PPERIQLLGKKESSFLNQLSSEERKKRIGKLFSLD---TPALIVSKGLP-IPEELLDAAKKYNIPILTSK 112 (308)
T ss_pred CcCeEEEechhHHHHHHhcChhhHHHHHHHHhCcC---CCEEEEECCCC-CCHHHHHHHHHcCCceEEec
Confidence 357999998776543222 222211111 12455664422 34668999999999998654
No 467
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=26.98 E-value=23 Score=29.01 Aligned_cols=54 Identities=17% Similarity=0.161 Sum_probs=37.8
Q ss_pred EEecCCCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHH-H-----HHHHHHHHHHhCceeeecCCcee
Q 020508 262 HFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEK-Q-----CLAKAIKSYCELRVLPYEMNKTV 323 (325)
Q Consensus 262 h~v~~~~D~G~Ii~Q~~~~I~~~dt~~~l~~r~~~~~~-~-----ll~~al~~i~~g~~~~~~~~~~~ 323 (325)
+++.+|.|=|| +.+.+++|..++.+++.+.-- . .-++.+++|-.|++. . |++|+
T Consensus 9 frl~dg~digp------~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiL-e-D~~TL 68 (113)
T cd01814 9 FRLYDGSDIGP------KRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKIL-E-NSKTV 68 (113)
T ss_pred EEccCCCccCc------cccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeec-C-CCCcH
Confidence 56778888887 578899999999999874322 1 335667777777755 2 45653
No 468
>PLN02477 glutamate dehydrogenase
Probab=26.97 E-value=2.5e+02 Score=28.09 Aligned_cols=166 Identities=8% Similarity=0.015 Sum_probs=87.9
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCC----CCC---chHHHHHHHCCCCEEEecCCCChhHHHHH
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDR----GPN---SHVIRFLERHGIPYHYLCAKENEREEELL 199 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~----~~~---~~~~~~a~~~gIp~~~~~~~~~~~~~~~~ 199 (325)
.+||+|-+.|+ |+.+..+|.. . +++|++| ++..- +.+ ..+.++.++.|- +..++.......++++
T Consensus 206 g~~VaIqGfGnVG~~~A~~L~e--~---GakVVaV-sD~~G~iy~~~GLD~~~L~~~k~~~g~-l~~~~~a~~i~~~e~l 278 (410)
T PLN02477 206 GQTFVIQGFGNVGSWAAQLIHE--K---GGKIVAV-SDITGAVKNENGLDIPALRKHVAEGGG-LKGFPGGDPIDPDDIL 278 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--c---CCEEEEE-ECCCCeEECCCCCCHHHHHHHHHhcCc-hhccccceEecCccce
Confidence 47899977665 5555555532 2 4777765 34320 011 223344444331 1112210001112232
Q ss_pred HHhcCCCEEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhCCcEeEEEEEEecCCCCCCCeEEEEEE
Q 020508 200 ELVQNTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVE 279 (325)
Q Consensus 200 ~~l~~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvh~v~~~~D~G~Ii~Q~~~ 279 (325)
.. ++|+.+-+.....|.++-....+-++| +=.+..|- .|-...++.. -|+.+- -|--.-+|-++..- +
T Consensus 279 ~~--~~DvliP~Al~~~I~~~na~~i~ak~I-~egAN~p~----t~ea~~~L~~---rGI~~~-PD~~aNaGGVivs~-~ 346 (410)
T PLN02477 279 VE--PCDVLIPAALGGVINKENAADVKAKFI-VEAANHPT----DPEADEILRK---KGVVVL-PDIYANSGGVTVSY-F 346 (410)
T ss_pred ec--cccEEeeccccccCCHhHHHHcCCcEE-EeCCCCCC----CHHHHHHHHH---CCcEEE-ChHHhCCCCeeeeH-H
Confidence 22 899999999999999999988876655 55666554 2222333332 233321 23346777777633 2
Q ss_pred eCC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 020508 280 RVS-----HRDNLRTFVQKSEDVEKQCLAKAIKSYCEL 312 (325)
Q Consensus 280 ~I~-----~~dt~~~l~~r~~~~~~~ll~~al~~i~~g 312 (325)
... ...+.++..+|+.+.-.+.+.+.++.-.+-
T Consensus 347 E~~qn~~~~~w~~~~v~~~l~~~m~~~~~~v~~~a~~~ 384 (410)
T PLN02477 347 EWVQNIQGFMWEEEKVNRELDRYMTDAFKALKEMCKTH 384 (410)
T ss_pred HhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 224677777777766566666666554443
No 469
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=26.94 E-value=3.2e+02 Score=26.75 Aligned_cols=45 Identities=22% Similarity=0.268 Sum_probs=26.5
Q ss_pred CCceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHC
Q 020508 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERH 180 (325)
Q Consensus 127 ~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~ 180 (325)
...|+..|+||. |-.+. |+. .+|+.++++|=-. .++|.-+.|.+.
T Consensus 11 ~a~kvmLLGSGELGKEva--Ie~---QRLG~eViAVDrY----~~APAmqVAhrs 56 (394)
T COG0027 11 QATKVMLLGSGELGKEVA--IEA---QRLGVEVIAVDRY----ANAPAMQVAHRS 56 (394)
T ss_pred CCeEEEEecCCccchHHH--HHH---HhcCCEEEEecCc----CCChhhhhhhhe
Confidence 457899999997 33221 222 2467888776322 245666666553
No 470
>COG4080 SpoU rRNA Methylase family enzyme [General function prediction only]
Probab=26.93 E-value=1.1e+02 Score=25.92 Aligned_cols=33 Identities=18% Similarity=0.308 Sum_probs=26.7
Q ss_pred hHHHHHHHCCCCEEEecCCCChhHHHHHHHhc--CCCEEEEec
Q 020508 172 HVIRFLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVLAR 212 (325)
Q Consensus 172 ~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~--~~Dliv~~g 212 (325)
.+.++|.++|.|+..++ ++.+.++ +||.+++.+
T Consensus 47 ~~~kla~k~G~~vlvf~--------dL~DAlevL~P~v~ll~~ 81 (147)
T COG4080 47 EVLKLAFKLGKPVLVFP--------DLDDALEVLRPDVTLLVG 81 (147)
T ss_pred HHHHHHHHhCCcEEEeh--------hHHHHHHhcCCceEEEec
Confidence 47899999999999887 3445555 899999996
No 471
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=26.90 E-value=2.2e+02 Score=27.80 Aligned_cols=20 Identities=25% Similarity=0.182 Sum_probs=14.0
Q ss_pred CceEEEEEeCC-chHHHHHHH
Q 020508 128 KYKVAVLASKQ-EHCLVDFLY 147 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~ 147 (325)
-++|+|++-|+ |+.....+.
T Consensus 16 gKtVGIIG~GsIG~amA~nL~ 36 (335)
T PRK13403 16 GKTVAVIGYGSQGHAQAQNLR 36 (335)
T ss_pred cCEEEEEeEcHHHHHHHHHHH
Confidence 36899999886 666555443
No 472
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=26.65 E-value=3.6e+02 Score=22.07 Aligned_cols=28 Identities=29% Similarity=0.464 Sum_probs=20.1
Q ss_pred chHHHHHHHCCCCEEEecCCCChhHHHHHHHhc
Q 020508 171 SHVIRFLERHGIPYHYLCAKENEREEELLELVQ 203 (325)
Q Consensus 171 ~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 203 (325)
..+..+|+++|||+..+.++ +++-.++.
T Consensus 63 ~~~~~lc~~~~Vp~~~~~tk-----~eLG~a~G 90 (122)
T PRK04175 63 AHLPLLCEEKKIPYVYVPSK-----KDLGKAAG 90 (122)
T ss_pred HHHHHHHHHcCCCEEEECCH-----HHHHHHhC
Confidence 46788999999999876521 35666664
No 473
>PRK14441 acylphosphatase; Provisional
Probab=26.57 E-value=2.5e+02 Score=21.76 Aligned_cols=59 Identities=12% Similarity=0.085 Sum_probs=42.7
Q ss_pred HHHHHHHhhhhhhcccceeeeecCCCCCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEe
Q 020508 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (325)
Q Consensus 101 ~L~~~l~~l~~~l~~~~~~~~~~~~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt 163 (325)
-+|.-...+|.++|+.-|..-.++ -+|-+.+.|....+..+++.++++...++|..+-.
T Consensus 19 GFR~~v~~~A~~lgL~G~V~N~~d----G~Vei~~qG~~~~i~~f~~~l~~gp~~a~V~~v~~ 77 (93)
T PRK14441 19 AFRQSAADEARRLGVEGWVRNLPD----GRVEAEAEGERAAVGALVRWCHAGPPAARVDRVEV 77 (93)
T ss_pred cchHHHHHHHhhcCcEEEEEECCC----CEEEEEEEECHHHHHHHHHHHhhCCCCcEEEEEEE
Confidence 367777788999999987533332 36778889988889999988876554566666543
No 474
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=26.12 E-value=5.5e+02 Score=24.59 Aligned_cols=20 Identities=10% Similarity=0.061 Sum_probs=11.0
Q ss_pred HHHHHHHHHhcCCeEeEeee
Q 020508 56 VAKLSECIASRGGNILAADV 75 (325)
Q Consensus 56 Va~Vt~~La~~giNI~~l~~ 75 (325)
+..+.+.+...+..|+....
T Consensus 77 ~~~l~~~~~~~~~DiIh~~~ 96 (398)
T cd03796 77 FPLLRNILIRERITIVHGHQ 96 (398)
T ss_pred HHHHHHHHHhcCCCEEEECC
Confidence 34455555555666666554
No 475
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=26.05 E-value=2.8e+02 Score=25.19 Aligned_cols=67 Identities=15% Similarity=0.030 Sum_probs=38.3
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCC
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 206 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 206 (325)
++++++++.|+ |+.|...+.. . +++|+ +.++.. .......++..+.-+.-. +..+..+.+|
T Consensus 1 m~~~~i~GtGniG~alA~~~a~--a---g~eV~--igs~r~--~~~~~a~a~~l~~~i~~~---------~~~dA~~~aD 62 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAK--A---GHEVI--IGSSRG--PKALAAAAAALGPLITGG---------SNEDAAALAD 62 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHh--C---CCeEE--EecCCC--hhHHHHHHHhhccccccC---------ChHHHHhcCC
Confidence 47899999987 7777665543 2 36653 444432 234555666666554311 1223333678
Q ss_pred EEEEec
Q 020508 207 FLVLAR 212 (325)
Q Consensus 207 liv~~g 212 (325)
+++++-
T Consensus 63 VVvLAV 68 (211)
T COG2085 63 VVVLAV 68 (211)
T ss_pred EEEEec
Confidence 888774
No 476
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=26.05 E-value=2.4e+02 Score=23.67 Aligned_cols=84 Identities=19% Similarity=0.253 Sum_probs=42.6
Q ss_pred eEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEE----EecCCCChhHHHHHHHhcC
Q 020508 130 KVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYH----YLCAKENEREEELLELVQN 204 (325)
Q Consensus 130 ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~----~~~~~~~~~~~~~~~~l~~ 204 (325)
||+|+++|. |+.+..++.. + +++|. +.+.++ ..+.++-+.+..+.+ .++..... ..++.+.+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~--~---g~~V~-l~~~~~----~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~~~ 69 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLAD--N---GHEVT-LWGRDE----EQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEALED 69 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHH--C---TEEEE-EETSCH----HHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHHTT
T ss_pred CEEEECcCHHHHHHHHHHHH--c---CCEEE-EEeccH----HHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHhCc
Confidence 799999997 6777776654 2 35544 444331 233444444442221 11111000 1234556678
Q ss_pred CCEEEEeccccccChhHHhhc
Q 020508 205 TDFLVLARYMQILSGKFLRSY 225 (325)
Q Consensus 205 ~Dliv~~g~~~il~~~~l~~~ 225 (325)
+|+++++--.+-++ ++++..
T Consensus 70 ad~IiiavPs~~~~-~~~~~l 89 (157)
T PF01210_consen 70 ADIIIIAVPSQAHR-EVLEQL 89 (157)
T ss_dssp -SEEEE-S-GGGHH-HHHHHH
T ss_pred ccEEEecccHHHHH-HHHHHH
Confidence 99999987666664 455543
No 477
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.02 E-value=5.8e+02 Score=24.27 Aligned_cols=76 Identities=13% Similarity=0.161 Sum_probs=44.3
Q ss_pred HHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHH----CCCCEEEecCCCChhHHHHHHHhcCCCEEEEe-cccc
Q 020508 141 CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLER----HGIPYHYLCAKENEREEELLELVQNTDFLVLA-RYMQ 215 (325)
Q Consensus 141 ~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~----~gIp~~~~~~~~~~~~~~~~~~l~~~Dliv~~-g~~~ 215 (325)
...+||++..-+ +...-+.|+ .+...-+.|+..+..+ .|--+....+ +...+.+.++++|++|++ |-..
T Consensus 143 av~~lL~~~~i~-l~Gk~vvVi-GrS~iVG~Pla~lL~~~~~~~~AtVt~~hs----~t~~l~~~~~~ADIVI~AvG~p~ 216 (286)
T PRK14184 143 GVMTLLERYGLS-PAGKKAVVV-GRSNIVGKPLALMLGAPGKFANATVTVCHS----RTPDLAEECREADFLFVAIGRPR 216 (286)
T ss_pred HHHHHHHHhCCC-CCCCEEEEE-CCCccchHHHHHHHhCCcccCCCEEEEEeC----CchhHHHHHHhCCEEEEecCCCC
Confidence 345566664321 222334444 4433346788887776 5555443331 223455666789998887 6788
Q ss_pred ccChhHH
Q 020508 216 ILSGKFL 222 (325)
Q Consensus 216 il~~~~l 222 (325)
+++++.+
T Consensus 217 li~~~~v 223 (286)
T PRK14184 217 FVTADMV 223 (286)
T ss_pred cCCHHHc
Confidence 8888877
No 478
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.89 E-value=5.8e+02 Score=24.23 Aligned_cols=86 Identities=14% Similarity=0.201 Sum_probs=48.3
Q ss_pred HHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHH--CCCCEEEecCCCChhHHHHHHHhcCCCEEEEe-cccccc
Q 020508 141 CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLER--HGIPYHYLCAKENEREEELLELVQNTDFLVLA-RYMQIL 217 (325)
Q Consensus 141 ~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~--~gIp~~~~~~~~~~~~~~~~~~l~~~Dliv~~-g~~~il 217 (325)
...+||+...- ++...-+.|+- +...-+.|+..+..+ .|--+....++ ...+.+.++++|++|++ |-..++
T Consensus 144 av~~ll~~~~i-~l~Gk~vvViG-rS~~VGkPla~lL~~~~~~atVtvchs~----T~~l~~~~k~ADIvV~AvGkp~~i 217 (284)
T PRK14193 144 GIVHLLRRYDV-ELAGAHVVVIG-RGVTVGRPIGLLLTRRSENATVTLCHTG----TRDLAAHTRRADIIVAAAGVAHLV 217 (284)
T ss_pred HHHHHHHHhCC-CCCCCEEEEEC-CCCcchHHHHHHHhhccCCCEEEEeCCC----CCCHHHHHHhCCEEEEecCCcCcc
Confidence 34556665432 22233344554 433346777777766 56555444322 12355566689998887 788899
Q ss_pred ChhHHhhcCCCEEEEcCC
Q 020508 218 SGKFLRSYGKDVINIHHG 235 (325)
Q Consensus 218 ~~~~l~~~~~~~iNiHps 235 (325)
+++.+. .|.+-+--|
T Consensus 218 ~~~~ik---~GavVIDvG 232 (284)
T PRK14193 218 TADMVK---PGAAVLDVG 232 (284)
T ss_pred CHHHcC---CCCEEEEcc
Confidence 988764 344444444
No 479
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.86 E-value=5.8e+02 Score=24.23 Aligned_cols=86 Identities=15% Similarity=0.201 Sum_probs=49.7
Q ss_pred HHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCCEEEEe-ccccccChh
Q 020508 142 LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLA-RYMQILSGK 220 (325)
Q Consensus 142 l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dliv~~-g~~~il~~~ 220 (325)
...|++...- .+...-+.|+-.. ..-+.++..+..+.|.-+....+ +...+.+.++++|++|++ |-..+++++
T Consensus 145 i~~ll~~~~i-~l~Gk~vvVIGrs-~~VG~pla~lL~~~gatVtv~~s----~t~~l~~~~~~ADIVIsAvg~p~~i~~~ 218 (286)
T PRK14175 145 IMEILKHADI-DLEGKNAVVIGRS-HIVGQPVSKLLLQKNASVTILHS----RSKDMASYLKDADVIVSAVGKPGLVTKD 218 (286)
T ss_pred HHHHHHHcCC-CCCCCEEEEECCC-chhHHHHHHHHHHCCCeEEEEeC----CchhHHHHHhhCCEEEECCCCCcccCHH
Confidence 3445555321 2333334555433 22356788888888888776552 223455666789999887 566678776
Q ss_pred HHhhcCCCEEEEcCCC
Q 020508 221 FLRSYGKDVINIHHGL 236 (325)
Q Consensus 221 ~l~~~~~~~iNiHpsl 236 (325)
.+ +.+.+-+--|.
T Consensus 219 ~v---k~gavVIDvGi 231 (286)
T PRK14175 219 VV---KEGAVIIDVGN 231 (286)
T ss_pred Hc---CCCcEEEEcCC
Confidence 54 33444444444
No 480
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.73 E-value=5.1e+02 Score=24.60 Aligned_cols=77 Identities=13% Similarity=0.126 Sum_probs=45.8
Q ss_pred HHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCCEEEEe-ccccccCh
Q 020508 141 CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLA-RYMQILSG 219 (325)
Q Consensus 141 ~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dliv~~-g~~~il~~ 219 (325)
...+||+...-+ +...-+.|+ .+...-+.|+..+..+.|--+....++ ...+.+.++++|++|++ |-..++++
T Consensus 143 avi~ll~~~~i~-l~Gk~vvVi-GrS~iVGkPla~lL~~~~AtVtichs~----T~nl~~~~~~ADIvI~AvGk~~~i~~ 216 (282)
T PRK14182 143 GVMRMLDEARVD-PKGKRALVV-GRSNIVGKPMAMMLLERHATVTIAHSR----TADLAGEVGRADILVAAIGKAELVKG 216 (282)
T ss_pred HHHHHHHHhCCC-CCCCEEEEE-CCCCcchHHHHHHHHHCCCEEEEeCCC----CCCHHHHHhhCCEEEEecCCcCccCH
Confidence 345566654321 223334445 444334678888888788766554422 12344555689998887 77888888
Q ss_pred hHHh
Q 020508 220 KFLR 223 (325)
Q Consensus 220 ~~l~ 223 (325)
+.+.
T Consensus 217 ~~ik 220 (282)
T PRK14182 217 AWVK 220 (282)
T ss_pred HHcC
Confidence 8764
No 481
>PRK08291 ectoine utilization protein EutC; Validated
Probab=25.69 E-value=3.3e+02 Score=26.06 Aligned_cols=99 Identities=17% Similarity=0.177 Sum_probs=51.6
Q ss_pred CceEEEEEeCCch--HHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHH----HCCCCEEEecCCCChhHHHHHHH
Q 020508 128 KYKVAVLASKQEH--CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLE----RHGIPYHYLCAKENEREEELLEL 201 (325)
Q Consensus 128 ~~ri~v~~Sg~g~--~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~----~~gIp~~~~~~~~~~~~~~~~~~ 201 (325)
.++++++++|.-. .+..+... . +.+-+.|+ ++. .....++++ ++|+++..++ ++.+.
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~---~--~~~~V~v~-~R~---~~~a~~l~~~~~~~~g~~v~~~~--------d~~~a 194 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLV---R--PIREVRVW-ARD---AAKAEAYAADLRAELGIPVTVAR--------DVHEA 194 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc---C--CCCEEEEE-cCC---HHHHHHHHHHHhhccCceEEEeC--------CHHHH
Confidence 4689999988532 22333221 1 23444445 443 223445554 3477765433 12344
Q ss_pred hcCCCEEEEecc--ccccChhHHhhcCCCEEEEcCCCCCCCCCCcH
Q 020508 202 VQNTDFLVLARY--MQILSGKFLRSYGKDVINIHHGLLPSFKGGKP 245 (325)
Q Consensus 202 l~~~Dliv~~g~--~~il~~~~l~~~~~~~iNiHpslLP~yRG~~p 245 (325)
+.++|+++.+.- ..+++.+.++ ++..++.=.+.+|.-|-..|
T Consensus 195 l~~aDiVi~aT~s~~p~i~~~~l~--~g~~v~~vg~d~~~~rEld~ 238 (330)
T PRK08291 195 VAGADIIVTTTPSEEPILKAEWLH--PGLHVTAMGSDAEHKNEIAP 238 (330)
T ss_pred HccCCEEEEeeCCCCcEecHHHcC--CCceEEeeCCCCCCcccCCH
Confidence 557899998853 3344444332 23355555566676666554
No 482
>PRK14447 acylphosphatase; Provisional
Probab=25.57 E-value=2.8e+02 Score=21.61 Aligned_cols=59 Identities=8% Similarity=0.009 Sum_probs=42.3
Q ss_pred HHHHHHhhhhhhcccceeeeecCCCCCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEe
Q 020508 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (325)
Q Consensus 102 L~~~l~~l~~~l~~~~~~~~~~~~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt 163 (325)
+|.-...+|.++|+.-|..-.++ --+|-+.+.|....+.++++.++.+...++|..+-.
T Consensus 19 FR~~~~~~A~~~gl~G~V~N~~d---G~~Vei~~qG~~~~l~~f~~~l~~gp~~a~V~~v~~ 77 (95)
T PRK14447 19 FRQSMKEVANRNGVRGWVRNRSD---GRTVEAVLEGPRDAVLKVIEWARVGPPGARVEDVEV 77 (95)
T ss_pred chHHHHHHHhhcCeEEEEEECCC---CCEEEEEEEeCHHHHHHHHHHHhhCCCCeEEEEEEE
Confidence 67777788999999987533332 114777778888999999998876654567666543
No 483
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=25.52 E-value=6.2e+02 Score=24.44 Aligned_cols=184 Identities=13% Similarity=0.103 Sum_probs=92.9
Q ss_pred chHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcccceeeeecCCCCCceEEE
Q 020508 54 GIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAV 133 (325)
Q Consensus 54 GIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~~~~~ri~v 133 (325)
.-+.++.+.|.+.|+.++++.-- ....| ..+....+.. .+.+.++. +.+.. ++.|+++
T Consensus 25 ~~~~~i~~~L~~aGv~~IEvg~~-~g~g~---~s~~~g~~~~-~~~e~i~~----~~~~~-------------~~~~~~~ 82 (337)
T PRK08195 25 EQVRAIARALDAAGVPVIEVTHG-DGLGG---SSFNYGFGAH-TDEEYIEA----AAEVV-------------KQAKIAA 82 (337)
T ss_pred HHHHHHHHHHHHcCCCEEEeecC-CCCCC---ccccCCCCCC-CHHHHHHH----HHHhC-------------CCCEEEE
Confidence 36788999999999999998641 11111 1122333331 12232222 22111 2346666
Q ss_pred EEe-CCchHHHHHHHHhhcCCCCceEEEEEeCCCCC-CCchHHHHHHHCCCCEEEec-CCCChhHHHHHHHh---c--CC
Q 020508 134 LAS-KQEHCLVDFLYGWQEGKLPVEITCVISNHDRG-PNSHVIRFLERHGIPYHYLC-AKENEREEELLELV---Q--NT 205 (325)
Q Consensus 134 ~~S-g~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~-~~~~~~~~a~~~gIp~~~~~-~~~~~~~~~~~~~l---~--~~ 205 (325)
|.. |.+ +..++-.+... +.+.+.|.+.-.+. ...+..++|+++|..+.... .......+++.+.. . ++
T Consensus 83 ll~pg~~-~~~dl~~a~~~---gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga 158 (337)
T PRK08195 83 LLLPGIG-TVDDLKMAYDA---GVRVVRVATHCTEADVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGA 158 (337)
T ss_pred EeccCcc-cHHHHHHHHHc---CCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCC
Confidence 543 333 23444333333 34555555433211 12346778888898776443 11112233444433 2 67
Q ss_pred CEEEEe-ccccccChhHHhhcC--------CCEEEEcCCCCCCCCCC--cHHHHHHHhCCcEeEEEEEEecC
Q 020508 206 DFLVLA-RYMQILSGKFLRSYG--------KDVINIHHGLLPSFKGG--KPAKQAFDAGVKLIGATSHFVTE 266 (325)
Q Consensus 206 Dliv~~-g~~~il~~~~l~~~~--------~~~iNiHpslLP~yRG~--~pi~~ai~~G~~~~GvTvh~v~~ 266 (325)
|.+.++ .++...|.++-+.++ .-.+.+|.=- -.|. +-...|+..|.+..=.|+.=+-+
T Consensus 159 ~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~Hn---nlGla~ANslaAi~aGa~~iD~Sl~GlG~ 227 (337)
T PRK08195 159 QCVYVVDSAGALLPEDVRDRVRALRAALKPDTQVGFHGHN---NLGLGVANSLAAVEAGATRIDGSLAGLGA 227 (337)
T ss_pred CEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCC---CcchHHHHHHHHHHhCCCEEEecChhhcc
Confidence 766655 577778877655331 2345555322 1343 33456788887766666655544
No 484
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=25.52 E-value=6.1e+02 Score=25.06 Aligned_cols=127 Identities=10% Similarity=0.156 Sum_probs=69.7
Q ss_pred EEeCCCCCChHHHHHHHHhhhhhhcccceeeeecCCCC--------------------CceEEEEEeC--C-------ch
Q 020508 90 FIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDP--------------------KYKVAVLASK--Q-------EH 140 (325)
Q Consensus 90 v~~p~~~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~~~--------------------~~ri~v~~Sg--~-------g~ 140 (325)
+.+|+ +.+.++|.+.++++.++-.++-..+..|=+.. +.+++-+..+ . ..
T Consensus 138 ~~lpe-~~te~ell~~I~~LN~D~~V~GIlVQlPLP~~id~~~i~~aI~P~KDVDGl~p~N~G~L~~g~~~~~f~PCTp~ 216 (364)
T PLN02616 138 VRLPE-DSTEQEVLKFISGFNNDPSVHGILVQLPLPSHMDEQNILNAVSIEKDVDGFHPLNIGRLAMRGREPLFVPCTPK 216 (364)
T ss_pred EECCC-CCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhhHHHhcCCCCCCCCCCCHH
Confidence 44566 55666777777777665555544444442100 2333333332 1 12
Q ss_pred HHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCCEEEEe-ccccccCh
Q 020508 141 CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLA-RYMQILSG 219 (325)
Q Consensus 141 ~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dliv~~-g~~~il~~ 219 (325)
...+||+...- .+..+-+.|| .+...-+.|+..+..+.|--+....++ ...+.+..+++|++|++ |-..++++
T Consensus 217 avielL~~y~i-~l~GK~vvVI-GRS~iVGkPLa~LL~~~~ATVTicHs~----T~nl~~~~r~ADIVIsAvGkp~~i~~ 290 (364)
T PLN02616 217 GCIELLHRYNV-EIKGKRAVVI-GRSNIVGMPAALLLQREDATVSIVHSR----TKNPEEITREADIIISAVGQPNMVRG 290 (364)
T ss_pred HHHHHHHHhCC-CCCCCEEEEE-CCCccccHHHHHHHHHCCCeEEEeCCC----CCCHHHHHhhCCEEEEcCCCcCcCCH
Confidence 33456655322 2223333444 444344778888888888766554422 12344555689998887 78888998
Q ss_pred hHHh
Q 020508 220 KFLR 223 (325)
Q Consensus 220 ~~l~ 223 (325)
+.+.
T Consensus 291 d~vK 294 (364)
T PLN02616 291 SWIK 294 (364)
T ss_pred HHcC
Confidence 8764
No 485
>cd07950 Gallate_Doxase_N The N-terminal domain of the Class III extradiol dioxygenase, Gallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of gallate. Gallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of gallate, an intermediate in the degradation of the aromatic compound, syringate. The reaction product of gallate dioxygenase is 4-oxalomesaconate. The amino acid sequence of the N-terminal and C-terminal regions of gallate dioxygenase exhibits homology with the sequence of PCA 4,5-dioxygenase B (catalytic) and A subunits, respectively. The enzyme is estimated to be a homodimer according to the Escherichia coli enzyme. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. In this subfamily, the subunits A and B are fused to make a single polypeptide chain. The dimer interface for this subfamily may resemble the tetramer interface of classical LigAB en
Probab=25.45 E-value=1.1e+02 Score=28.67 Aligned_cols=76 Identities=17% Similarity=0.262 Sum_probs=43.0
Q ss_pred HHHHHhc--CCCEEEEeccccccChhHHhhcCCCEEEEcCCC-----------CCCCCCCcHHHHHHHhCCcEeEEEEEE
Q 020508 197 ELLELVQ--NTDFLVLARYMQILSGKFLRSYGKDVINIHHGL-----------LPSFKGGKPAKQAFDAGVKLIGATSHF 263 (325)
Q Consensus 197 ~~~~~l~--~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpsl-----------LP~yRG~~pi~~ai~~G~~~~GvTvh~ 263 (325)
++-+.++ +||.+|+.+-.+...= +.+..+.-+|+..+++ ++.++|...+-+.|.+.....|+.+-.
T Consensus 39 ~~~~~i~~~~PD~iVvi~~dH~~~f-~~d~~p~f~Ig~~~~~~~~d~~~~~~~~~~~~g~~~LA~~i~~~~~~~g~~~~~ 117 (277)
T cd07950 39 PVKQWLAEQKPDVLFMVYNDHVTSF-FFDHYSAFALGVGDSYEVADEGGGPRDLPPIRGHAALAQHIAESLVADEFDLTF 117 (277)
T ss_pred HHHHHHHHhCCCEEEEEcCcHHHHh-ccccCCcEEEEecccccccccccCCccCCCCCCCHHHHHHHHHHHHhcCCCeee
Confidence 4555554 8999999883322110 1222223355666555 356777777888887664445544433
Q ss_pred ecC-CCCCCCe
Q 020508 264 VTE-ELDAGPI 273 (325)
Q Consensus 264 v~~-~~D~G~I 273 (325)
..+ ++|.|-.
T Consensus 118 ~~~~~lDHG~~ 128 (277)
T cd07950 118 FQDKPLDHGCF 128 (277)
T ss_pred ccCCCCCceee
Confidence 333 5888843
No 486
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=25.38 E-value=3.3e+02 Score=21.26 Aligned_cols=59 Identities=12% Similarity=0.042 Sum_probs=45.1
Q ss_pred HHHHHHHhhhhhhcccceeeeecCCCCCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEe
Q 020508 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (325)
Q Consensus 101 ~L~~~l~~l~~~l~~~~~~~~~~~~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt 163 (325)
-++......|.+||++-|.+-.++ =+|=+++.|....++.+++.++.|...++|.-|-.
T Consensus 18 GFR~~~~~~A~~lgl~G~V~N~~D----GsVeiva~G~~~~v~~~~~~l~~g~~~a~V~~v~~ 76 (92)
T COG1254 18 GFRYFTRSEALRLGLTGWVKNLDD----GSVEIVAEGPDEAVEKFIEWLRKGPPAAKVERVEV 76 (92)
T ss_pred cHHHHHHHHHHHCCCEEEEEECCC----CeEEEEEEcCHHHHHHHHHHHHhCCCceEEEEEEE
Confidence 478888899999999988655554 26777778887779999999887754477776655
No 487
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=25.34 E-value=1.6e+02 Score=30.88 Aligned_cols=71 Identities=15% Similarity=0.227 Sum_probs=42.3
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhc--C
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--N 204 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~--~ 204 (325)
+.+|.+++.|. |..+...+.. . +++++.+=.|+ ...+.+++.|.++++-+ ..++++++... +
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~---~--g~~vvvID~d~------~~v~~~~~~g~~v~~GD----at~~~~L~~agi~~ 464 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMA---N--KMRITVLERDI------SAVNLMRKYGYKVYYGD----ATQLELLRAAGAEK 464 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHh---C--CCCEEEEECCH------HHHHHHHhCCCeEEEee----CCCHHHHHhcCCcc
Confidence 45788887775 5665554443 1 34544333222 34667788999998765 22345666554 7
Q ss_pred CCEEEEecc
Q 020508 205 TDFLVLARY 213 (325)
Q Consensus 205 ~Dliv~~g~ 213 (325)
+|.++++.=
T Consensus 465 A~~vv~~~~ 473 (601)
T PRK03659 465 AEAIVITCN 473 (601)
T ss_pred CCEEEEEeC
Confidence 887777643
No 488
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=25.24 E-value=4.3e+02 Score=25.25 Aligned_cols=51 Identities=12% Similarity=0.201 Sum_probs=31.1
Q ss_pred ceEEEEEeCC-ch--HHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEec
Q 020508 129 YKVAVLASKQ-EH--CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 129 ~ri~v~~Sg~-g~--~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~ 188 (325)
+||+++..+. || .+..|...+++. +|+|.. +|.. ......+..|+.++.++
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~r--Gh~V~~-~t~~------~~~~~v~~~G~~~~~~~ 54 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAA--GHEVRV-ATPP------EFADLVEAAGLEFVPVG 54 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHC--CCeEEE-eeCH------hHHHHHHHcCCceeeCC
Confidence 5888888764 54 344444444332 478664 4433 23567778898887665
No 489
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=25.10 E-value=2.2e+02 Score=27.70 Aligned_cols=17 Identities=24% Similarity=0.184 Sum_probs=12.0
Q ss_pred CceEEEEEeCC-chHHHH
Q 020508 128 KYKVAVLASKQ-EHCLVD 144 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~ 144 (325)
.+||+|++.|+ |+.+..
T Consensus 17 gktIgIIG~GsmG~AlA~ 34 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHAL 34 (330)
T ss_pred CCEEEEEeeHHHHHHHHH
Confidence 36899999886 555443
No 490
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=25.05 E-value=4.3e+02 Score=27.08 Aligned_cols=199 Identities=9% Similarity=-0.032 Sum_probs=97.5
Q ss_pred ceEEEEEEcCC-----CcchHHHHHHHHHhcCCeEeEee---eecc---C-CCCeEEEEEEE--------------EeC-
Q 020508 41 THGIHVFHCPD-----EVGIVAKLSECIASRGGNILAAD---VFVP---E-KKNVFYSRSEF--------------IFD- 93 (325)
Q Consensus 41 ~~~~ltv~g~D-----rpGIVa~Vt~~La~~giNI~~l~---~~~~---~-~~g~F~~~~~v--------------~~p- 93 (325)
.+..+.+.|+= .+|=+.++.+.|.+.|+.+.-+- ++.. . ....+...+.- .+|
T Consensus 157 ~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~v~p~g~s~~dl~~l~~A~~NIv~~~~~g~~~A~~Le~~fGiP~ 236 (511)
T TIGR01278 157 EKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNVVAPWGASIADLARLPAAWLNICPYREIGLMAAEYLKEKFGQPY 236 (511)
T ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHhcccCcEEEEechHHHHHHHHHHHHHhCCCc
Confidence 45567777653 56788999999999999987642 1211 1 11233322110 111
Q ss_pred --CCCCChHHHHHHHHhhhhhh---cccc-----------------eeeeecCC--CCCceEEEEEeCCchHHHHHHHHh
Q 020508 94 --PIKWPREQMDEDFFKLSKMF---NAMR-----------------SVVRVPDI--DPKYKVAVLASKQEHCLVDFLYGW 149 (325)
Q Consensus 94 --~~~~~~~~L~~~l~~l~~~l---~~~~-----------------~~~~~~~~--~~~~ri~v~~Sg~g~~l~~Ll~~~ 149 (325)
..+.....-.+-|.++++-+ |++. |-+|..+. -..+|++|++. .+-...+.+.+
T Consensus 237 i~~~PiG~~~T~~fL~~l~~~~~~~g~~~~~e~~i~~e~~~~~~~~~~~r~~d~~~l~Gkrv~I~gd--~~~a~~l~~~L 314 (511)
T TIGR01278 237 ITTTPIGVNATRRFIREIAALLNQAGADPYYESFILDGLSAVSQAAWFARSIDSQSLTGKRAFVFGD--ATHAVGMTKIL 314 (511)
T ss_pred ccccccCHHHHHHHHHHHHHHHhhcCCCCcHHHHHHhhhhhhhhHHHHHhhhhhHHhcCCeEEEEcC--cHHHHHHHHHH
Confidence 01233444445555555555 5442 11111111 12468877663 23223332222
Q ss_pred hcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhc--CCCEEEEeccccccChhHHhhcCC
Q 020508 150 QEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVLARYMQILSGKFLRSYGK 227 (325)
Q Consensus 150 ~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~--~~Dliv~~g~~~il~~~~l~~~~~ 227 (325)
..+++.+++++.|.... ....+.+.++..+-.+...+ .-.++.+.++ +||+++--.+.+-+.. ....
T Consensus 315 -~~ElG~~vv~~gt~~~~-~~~~~~~~~~~~~~~~~i~d-----D~~ei~~~i~~~~pdliiG~~~er~~a~----~lgi 383 (511)
T TIGR01278 315 -ARELGIHIVGAGTYCKY-DADWVREQVAGYVDEVLITD-----DFQEVADAIAALEPELVLGTQMERHSAK----RLDI 383 (511)
T ss_pred -HHhCCCEEEecCCchhh-hHHHHHHHHHhcCCCeEEeC-----CHHHHHHHHHhcCCCEEEEChHHHHHHH----HcCC
Confidence 23467888776553321 11223344444443333221 1136667765 7999999876654432 2222
Q ss_pred CEE---------EEcCCCCC--CCCCCcHHHHHHHh
Q 020508 228 DVI---------NIHHGLLP--SFKGGKPAKQAFDA 252 (325)
Q Consensus 228 ~~i---------NiHpslLP--~yRG~~pi~~ai~~ 252 (325)
.++ |++-+.-| -|+|..-+...+.|
T Consensus 384 p~~~i~~Pv~~~~~~~~~~p~~Gy~Ga~~l~~~i~n 419 (511)
T TIGR01278 384 PCGVISAPTHIQNFPLGYRPFLGFEGANVMADTVYN 419 (511)
T ss_pred CEEEecCcchhhcccccCCCccchHHHHHHHHHHHH
Confidence 233 33333334 48887766555444
No 491
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=24.88 E-value=1.9e+02 Score=26.27 Aligned_cols=17 Identities=6% Similarity=0.257 Sum_probs=11.7
Q ss_pred CceEEEEEeCC-chHHHH
Q 020508 128 KYKVAVLASKQ-EHCLVD 144 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~ 144 (325)
++||+|++.|. |+.+..
T Consensus 2 mm~I~iIG~G~mG~~la~ 19 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIG 19 (267)
T ss_pred CCEEEEEechHHHHHHHH
Confidence 46899999876 454433
No 492
>PRK14422 acylphosphatase; Provisional
Probab=24.78 E-value=3e+02 Score=21.36 Aligned_cols=60 Identities=12% Similarity=0.002 Sum_probs=43.5
Q ss_pred HHHHHHHHhhhhhhcccceeeeecCCCCCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEe
Q 020508 100 EQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (325)
Q Consensus 100 ~~L~~~l~~l~~~l~~~~~~~~~~~~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt 163 (325)
=-+|.-...+|.++|+.-|..-.++ =+|-+.+.|....+.++++.++.+...+.|..+-.
T Consensus 19 VGFR~~v~~~A~~~gl~G~V~N~~d----G~Vei~~~G~~~~i~~f~~~l~~gp~~a~V~~i~~ 78 (93)
T PRK14422 19 VGFRWWTRSRALELGLTGYAANLAD----GRVQVVAEGPRAACEKLLQLLRGDDTPGRVDKVVE 78 (93)
T ss_pred cCcHHHHHHHHHHcCCEEEEEECCC----CCEEEEEEcCHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 3477777888999999987433332 24778889998899999999887644566666544
No 493
>cd06390 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=24.68 E-value=5e+02 Score=25.07 Aligned_cols=149 Identities=13% Similarity=0.104 Sum_probs=80.8
Q ss_pred ceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcccceee
Q 020508 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVV 120 (325)
Q Consensus 41 ~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~~~~ 120 (325)
.+-+..+.||-.....+-|+.+..+.++=.+..+.. ......|+ +.+-+ . +..|+.++-+.+ . |
T Consensus 54 ~~gV~AI~Gp~s~~~a~~v~sic~~~~vP~i~~~~~-~~~~~~~~----i~~~P-----~-~~~Ai~diI~~~---~--W 117 (364)
T cd06390 54 SKGVYAIFGFYDRKTVNMLTSFCGALHVCFITPSFP-VDTSNQFV----LQLRP-----E-LQDALISVIEHY---K--W 117 (364)
T ss_pred hcCceEEEccCChhHHHHHHHhhcCCCCCceecCCC-CCCCCceE----EEeCh-----h-HHHHHHHHHHHc---C--C
Confidence 344889999999999999999998888876654321 11233553 22222 1 567777776655 2 3
Q ss_pred eecCCCCCceEEEEEeCC-c-hHHHHHHHHhhcCCCCceEEEEEeCCCCCC-CchHHHHHHHCCCCEEEecCCCChhHHH
Q 020508 121 RVPDIDPKYKVAVLASKQ-E-HCLVDFLYGWQEGKLPVEITCVISNHDRGP-NSHVIRFLERHGIPYHYLCAKENEREEE 197 (325)
Q Consensus 121 ~~~~~~~~~ri~v~~Sg~-g-~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~-~~~~~~~a~~~gIp~~~~~~~~~~~~~~ 197 (325)
+ |++++-... | ..++.|++..+.. +.+|..+...+.+.. -..+++-.++.+.-++.+. .+.+.
T Consensus 118 ~--------~v~iIYd~d~g~~~lq~l~~~~~~~--~~~I~~~~~~~~~~~d~~~~L~~ik~~~~rvIVl~----~~~~~ 183 (364)
T cd06390 118 Q--------KFVYIYDADRGLSVLQKVLDTAAEK--NWQVTAVNILTTTEEGYRKLFQDLDKKKERLIVVD----CESER 183 (364)
T ss_pred c--------EEEEEEeCCccHHHHHHHHHhhhcc--CceeeEEEeecCChHHHHHHHHhccccCCeEEEEE----CCHHH
Confidence 3 777777543 3 4567777775543 344443322221100 1223333344555555554 11223
Q ss_pred HHHHhcCC--CEEEEeccccccCh
Q 020508 198 LLELVQNT--DFLVLARYMQILSG 219 (325)
Q Consensus 198 ~~~~l~~~--Dliv~~g~~~il~~ 219 (325)
+...|+++ ......+|.+|+..
T Consensus 184 ~~~~L~~a~~~~~~~~gy~wI~t~ 207 (364)
T cd06390 184 LNAILNQIIKLEKNGIGYHYILAN 207 (364)
T ss_pred HHHHHHHHHHhhccCCceEEEecC
Confidence 33333311 22235677777775
No 494
>COG1671 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.56 E-value=4.6e+02 Score=22.58 Aligned_cols=85 Identities=9% Similarity=0.080 Sum_probs=56.6
Q ss_pred EEEEEEeCCCCCChHHHHHHHHhhhhhhcccceeeeec----CCCCCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEE
Q 020508 86 SRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVP----DIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCV 161 (325)
Q Consensus 86 ~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~~~~~~~----~~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~V 161 (325)
|.+-|+-..++ +++.+...+++++++-..+.-. ...+..|.++..+|....=..+++.++.|. .|
T Consensus 2 ~~I~VDADACP-----Vk~~i~r~A~r~~~~v~~Van~~~~~~~~~~i~~v~V~~g~DaaD~~Iv~~a~~gD------lV 70 (150)
T COG1671 2 MTIWVDADACP-----VKDEIYRVAERMGLKVTFVANFPHRVPPSPEIRTVVVDAGFDAADDWIVNLAEKGD------LV 70 (150)
T ss_pred ceEEEeCCCCc-----hHHHHHHHHHHhCCeEEEEeCCCccCCCCCceeEEEecCCcchHHHHHHHhCCCCC------EE
Confidence 45667766654 7788888899999886544411 133556666655665544445676666554 36
Q ss_pred EeCCCCCCCchHHHHHHHCCCCEEE
Q 020508 162 ISNHDRGPNSHVIRFLERHGIPYHY 186 (325)
Q Consensus 162 vt~~~~~~~~~~~~~a~~~gIp~~~ 186 (325)
||. +-++..++-+.|.-+..
T Consensus 71 VT~-----Di~LA~~ll~kg~~v~~ 90 (150)
T COG1671 71 VTA-----DIPLASLLLDKGAAVLN 90 (150)
T ss_pred EEC-----chHHHHHHHhcCCEEEC
Confidence 774 46889999999998863
No 495
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=24.50 E-value=2.9e+02 Score=27.15 Aligned_cols=52 Identities=17% Similarity=0.259 Sum_probs=33.4
Q ss_pred CCCceEEEEEeCCchHHHHHHHHh-hcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCC
Q 020508 126 DPKYKVAVLASKQEHCLVDFLYGW-QEGKLPVEITCVISNHDRGPNSHVIRFLERHGIP 183 (325)
Q Consensus 126 ~~~~ri~v~~Sg~g~~l~~Ll~~~-~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp 183 (325)
++..|+++++.|.-. ++....+ ..++.+++|++|.+.. -.-.+++|+++++|
T Consensus 4 s~~ir~Gi~g~g~ia--~~f~~al~~~p~s~~~Ivava~~s----~~~A~~fAq~~~~~ 56 (351)
T KOG2741|consen 4 SATIRWGIVGAGRIA--RDFVRALHTLPESNHQIVAVADPS----LERAKEFAQRHNIP 56 (351)
T ss_pred CceeEEEEeehhHHH--HHHHHHhccCcccCcEEEEEeccc----HHHHHHHHHhcCCC
Confidence 356899998866421 2222221 1233469999988753 34578999999996
No 496
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=24.37 E-value=2.4e+02 Score=23.87 Aligned_cols=18 Identities=11% Similarity=-0.071 Sum_probs=14.4
Q ss_pred chHHHHHHHCCCCEEEec
Q 020508 171 SHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 171 ~~~~~~a~~~gIp~~~~~ 188 (325)
.+..++|+.+|++...+.
T Consensus 129 ~d~~~la~a~G~~~~~v~ 146 (172)
T cd02004 129 TRYDLVAEAFGGKGELVT 146 (172)
T ss_pred CCHHHHHHHCCCeEEEEC
Confidence 356889999999988765
No 497
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=24.34 E-value=5.8e+02 Score=23.73 Aligned_cols=141 Identities=11% Similarity=0.122 Sum_probs=67.7
Q ss_pred ceEEEEEeC--Cc--hHHHHHHHHhhcCCCCceEEEEEeCCCCCC-CchHHHHHHHCCCCEEEecCCCChhH---HHHHH
Q 020508 129 YKVAVLASK--QE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-NSHVIRFLERHGIPYHYLCAKENERE---EELLE 200 (325)
Q Consensus 129 ~ri~v~~Sg--~g--~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~-~~~~~~~a~~~gIp~~~~~~~~~~~~---~~~~~ 200 (325)
.++..|+.. .| +.+..|...++.. +..|..|-++.-+.. ...+..|++..|+|++......+..+ ..+..
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~--g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~ 149 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQ--GKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQK 149 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHH
Confidence 455555533 33 3444454444322 345554444432211 13467789999999874432111111 11112
Q ss_pred Hhc-CCCEEEEecccccc-ChhHHh---h-----------cCCCEEEEcCCCCCCCCCCcHHHHHHH--hCCcEeEEEEE
Q 020508 201 LVQ-NTDFLVLARYMQIL-SGKFLR---S-----------YGKDVINIHHGLLPSFKGGKPAKQAFD--AGVKLIGATSH 262 (325)
Q Consensus 201 ~l~-~~Dliv~~g~~~il-~~~~l~---~-----------~~~~~iNiHpslLP~yRG~~pi~~ai~--~G~~~~GvTvh 262 (325)
... +.|++++=.=++.- ....++ . .+...+= -++.--|...+.++.. ......|+=+=
T Consensus 150 ~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~L----Vl~a~~~~~~~~~~~~f~~~~~~~g~IlT 225 (272)
T TIGR00064 150 AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLL----VLDATTGQNALEQAKVFNEAVGLTGIILT 225 (272)
T ss_pred HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEE----EEECCCCHHHHHHHHHHHhhCCCCEEEEE
Confidence 222 68988886555432 222221 0 0111111 1222356666666533 23456777777
Q ss_pred EecCCCCCCCeEE
Q 020508 263 FVTEELDAGPIIE 275 (325)
Q Consensus 263 ~v~~~~D~G~Ii~ 275 (325)
++|+.--.|.++.
T Consensus 226 KlDe~~~~G~~l~ 238 (272)
T TIGR00064 226 KLDGTAKGGIILS 238 (272)
T ss_pred ccCCCCCccHHHH
Confidence 7887777776654
No 498
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=24.31 E-value=2.4e+02 Score=25.69 Aligned_cols=118 Identities=16% Similarity=0.085 Sum_probs=62.2
Q ss_pred chHHHHHHHHHhcCCeEeEeeeecc--CCC---------C-----eEE---------EEEEEEeCCCCCChHHHHHHHHh
Q 020508 54 GIVAKLSECIASRGGNILAADVFVP--EKK---------N-----VFY---------SRSEFIFDPIKWPREQMDEDFFK 108 (325)
Q Consensus 54 GIVa~Vt~~La~~giNI~~l~~~~~--~~~---------g-----~F~---------~~~~v~~p~~~~~~~~L~~~l~~ 108 (325)
....+.-..+.++|+++...++..+ +.+ | .|. +-....+|+ +.+.++|.+.+++
T Consensus 75 ~~~~~~~~~li~~~I~vy~~Ht~lD~~~~G~n~~La~~Lgl~~~~~~~~~~~~~~~g~g~i~~l~~-~~s~~el~~~vk~ 153 (241)
T PF01784_consen 75 DYKGKIIEKLIKNGISVYSAHTNLDAAPGGVNDYLAKKLGLENIKPLDPSKSGEGYGLGRIGELPE-PMSLEELAERVKE 153 (241)
T ss_dssp SHHHHHHHHHHHTT-EEEEESHHHHHSTTSHHHHHHHHHTEEEEEEEEEEEEEEEEECEEEEEEEE-EEEHHHHHHHHHH
T ss_pred chhhHHHHHHHHCCCEEEEecccccccCcCHHHHHHHHhCCCCccccccccccccceeeeEeecCC-CCCHHHHHHHHHH
Confidence 3466777777888888888777642 110 0 111 112345665 4566766666555
Q ss_pred hhhhhcccceeeeec-CCCCC-ceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEE
Q 020508 109 LSKMFNAMRSVVRVP-DIDPK-YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHY 186 (325)
Q Consensus 109 l~~~l~~~~~~~~~~-~~~~~-~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~ 186 (325)
.|+++. +|.. ....+ .|||+ ++|+|..+.... .+. +++ +++|-.- ...-...|.+.|+.+..
T Consensus 154 ---~l~~~~--vr~~g~~~~~v~rVav-~~GsG~~~i~~a--~~~---g~D--~~ITGd~---~~h~~~~a~~~g~~lI~ 217 (241)
T PF01784_consen 154 ---KLGLPG--VRVVGDPDKKVKRVAV-CGGSGGSFIEEA--AEA---GAD--VYITGDI---KYHDAQDAKENGINLID 217 (241)
T ss_dssp ---HTTSS---EEEESCTTSEEEEEEE-ECSSSGGGHHHH--HHT---TSS--EEEESS-----HHHHHHHHHCTSEEEE
T ss_pred ---HcCCCc--EEecCCCCCcccEEEE-EcccCccHHHHH--HhC---CCe--EEEEccC---cHHHHHHHHHCCCEEEE
Confidence 566653 5654 33333 56774 557665332211 122 233 4566442 23456778899999886
Q ss_pred ec
Q 020508 187 LC 188 (325)
Q Consensus 187 ~~ 188 (325)
..
T Consensus 218 ~g 219 (241)
T PF01784_consen 218 AG 219 (241)
T ss_dssp --
T ss_pred cC
Confidence 65
No 499
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=24.29 E-value=3.5e+02 Score=26.38 Aligned_cols=84 Identities=15% Similarity=0.155 Sum_probs=47.2
Q ss_pred ceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCC---CchHHHHHHHCCCCEEEecC-CCChhHH---HHHHH
Q 020508 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP---NSHVIRFLERHGIPYHYLCA-KENEREE---ELLEL 201 (325)
Q Consensus 129 ~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~---~~~~~~~a~~~gIp~~~~~~-~~~~~~~---~~~~~ 201 (325)
.||. |+.|.-..+.+.+... +.+-+.||+.+.-.+ ...+.+..++.|+.+..++. ..+...+ +..+.
T Consensus 8 ~~i~-fG~g~l~~l~~~l~~~-----g~~r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~ 81 (379)
T TIGR02638 8 ETSY-FGAGAIEDIVDEVKRR-----GFKKALVVTDKDLIKFGVADKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAA 81 (379)
T ss_pred CeEE-ECcCHHHHHHHHHHhc-----CCCEEEEEcCcchhhccchHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHH
Confidence 3543 4444333444444332 334467788753211 13466777889999987762 1222222 34444
Q ss_pred hc--CCCEEEEeccccccC
Q 020508 202 VQ--NTDFLVLARYMQILS 218 (325)
Q Consensus 202 l~--~~Dliv~~g~~~il~ 218 (325)
++ ++|.||.+|=+..++
T Consensus 82 ~~~~~~D~IiaiGGGSviD 100 (379)
T TIGR02638 82 FKASGADYLIAIGGGSPID 100 (379)
T ss_pred HHhcCCCEEEEeCChHHHH
Confidence 44 799999998876664
No 500
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=24.17 E-value=6.8e+02 Score=24.44 Aligned_cols=149 Identities=12% Similarity=0.104 Sum_probs=77.6
Q ss_pred EEeCCCCCChHHHHHHHHhhhhhhcccceeeeecCCCCCceEEEEEeCCch--HHHHHHHHhhcCCCCceEEEEEeCCCC
Q 020508 90 FIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEH--CLVDFLYGWQEGKLPVEITCVISNHDR 167 (325)
Q Consensus 90 v~~p~~~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~~~~~ri~v~~Sg~g~--~l~~Ll~~~~~~~l~~~I~~Vvt~~~~ 167 (325)
+.+|+ +.+.+...- -+|.-.=. -+.++.....+-.||+|.+-| |. -.-.+.++ ++++|+++=.+.+
T Consensus 134 ~~iP~-~~d~~~aAp---llCaGiT~-y~alk~~~~~pG~~V~I~G~G-GlGh~avQ~Aka-----~ga~Via~~~~~~- 201 (339)
T COG1064 134 VKIPE-GLDLAEAAP---LLCAGITT-YRALKKANVKPGKWVAVVGAG-GLGHMAVQYAKA-----MGAEVIAITRSEE- 201 (339)
T ss_pred EECCC-CCChhhhhh---hhcCeeeE-eeehhhcCCCCCCEEEEECCc-HHHHHHHHHHHH-----cCCeEEEEeCChH-
Confidence 66888 566443332 22433211 122445555667899998877 43 32223332 2478776554443
Q ss_pred CCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhc-CCCEEEEeccccccChhHHhhcCCCEEEEcCCCCC-CCCCCcH
Q 020508 168 GPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLP-SFKGGKP 245 (325)
Q Consensus 168 ~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~-~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP-~yRG~~p 245 (325)
-++.|+++|-......+ +++..+.++ .+|+++...=..-+++.+-..-+.|.+.+= |+.| ...=.-|
T Consensus 202 -----K~e~a~~lGAd~~i~~~-----~~~~~~~~~~~~d~ii~tv~~~~~~~~l~~l~~~G~~v~v-G~~~~~~~~~~~ 270 (339)
T COG1064 202 -----KLELAKKLGADHVINSS-----DSDALEAVKEIADAIIDTVGPATLEPSLKALRRGGTLVLV-GLPGGGPIPLLP 270 (339)
T ss_pred -----HHHHHHHhCCcEEEEcC-----CchhhHHhHhhCcEEEECCChhhHHHHHHHHhcCCEEEEE-CCCCCcccCCCC
Confidence 27889999999875432 233444444 489877653343333333222244433322 2221 1111234
Q ss_pred HHHHHHhCCcEeEEEE
Q 020508 246 AKQAFDAGVKLIGATS 261 (325)
Q Consensus 246 i~~ai~~G~~~~GvTv 261 (325)
.++-+.++.+..|..+
T Consensus 271 ~~~li~~~~~i~GS~~ 286 (339)
T COG1064 271 AFLLILKEISIVGSLV 286 (339)
T ss_pred HHHhhhcCeEEEEEec
Confidence 5666777777777654
Done!