Query 020508
Match_columns 325
No_of_seqs 294 out of 2574
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 04:01:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020508.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020508hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3n0v_A Formyltetrahydrofolate 100.0 1.4E-71 4.8E-76 521.6 38.5 278 38-325 4-286 (286)
2 3o1l_A Formyltetrahydrofolate 100.0 2.5E-71 8.6E-76 522.7 36.6 277 40-325 20-301 (302)
3 3lou_A Formyltetrahydrofolate 100.0 3.3E-71 1.1E-75 520.2 36.9 280 37-325 5-291 (292)
4 3obi_A Formyltetrahydrofolate 100.0 4.3E-71 1.5E-75 518.8 33.6 277 41-325 5-286 (288)
5 3nrb_A Formyltetrahydrofolate 100.0 4.9E-71 1.7E-75 518.1 32.7 276 40-325 5-285 (287)
6 3kcq_A Phosphoribosylglycinami 100.0 7.4E-51 2.5E-55 366.4 27.2 196 125-324 5-202 (215)
7 3tqr_A Phosphoribosylglycinami 100.0 2.4E-50 8.1E-55 363.1 27.3 193 127-324 4-202 (215)
8 1jkx_A GART;, phosphoribosylgl 100.0 8.1E-50 2.8E-54 359.5 27.4 193 129-325 1-199 (212)
9 4ds3_A Phosphoribosylglycinami 100.0 5.8E-50 2E-54 359.1 26.0 193 127-323 6-207 (209)
10 1meo_A Phosophoribosylglycinam 100.0 8.8E-50 3E-54 358.4 26.7 193 129-324 1-199 (209)
11 3da8_A Probable 5'-phosphoribo 100.0 1.1E-49 3.8E-54 358.7 27.0 193 125-323 9-207 (215)
12 3p9x_A Phosphoribosylglycinami 100.0 8.8E-50 3E-54 358.1 24.2 187 128-317 2-194 (211)
13 3auf_A Glycinamide ribonucleot 100.0 3.3E-49 1.1E-53 359.2 27.6 200 122-325 16-221 (229)
14 2ywr_A Phosphoribosylglycinami 100.0 3.5E-48 1.2E-52 349.9 27.0 194 128-325 1-200 (216)
15 3av3_A Phosphoribosylglycinami 100.0 6.2E-48 2.1E-52 347.3 25.3 185 128-315 3-193 (212)
16 1fmt_A Methionyl-tRNA FMet for 100.0 3.7E-43 1.3E-47 333.4 23.5 183 127-318 2-195 (314)
17 2bln_A Protein YFBG; transfera 100.0 4.7E-43 1.6E-47 331.5 20.6 181 129-318 1-189 (305)
18 3rfo_A Methionyl-tRNA formyltr 100.0 5.2E-42 1.8E-46 325.7 23.1 184 126-318 2-196 (317)
19 3q0i_A Methionyl-tRNA formyltr 100.0 2.8E-42 9.7E-47 327.7 21.3 183 127-318 6-199 (318)
20 3tqq_A Methionyl-tRNA formyltr 100.0 7.7E-42 2.6E-46 324.2 23.8 182 128-318 2-194 (314)
21 2bw0_A 10-FTHFDH, 10-formyltet 100.0 1.2E-40 4.1E-45 318.0 20.4 186 127-317 21-213 (329)
22 1z7e_A Protein aRNA; rossmann 100.0 1E-39 3.5E-44 336.8 21.5 181 129-318 1-189 (660)
23 1zgh_A Methionyl-tRNA formyltr 100.0 3.8E-31 1.3E-35 243.7 10.7 112 198-317 69-183 (260)
24 3p96_A Phosphoserine phosphata 99.6 2.5E-14 8.5E-19 139.4 15.2 119 40-163 10-137 (415)
25 1zpv_A ACT domain protein; str 99.5 2.7E-13 9.1E-18 104.6 11.4 74 41-117 4-77 (91)
26 2nyi_A Unknown protein; protei 99.5 9.3E-14 3.2E-18 122.7 7.7 78 37-116 88-169 (195)
27 1u8s_A Glycine cleavage system 99.4 6.8E-12 2.3E-16 110.0 13.5 74 40-117 4-77 (192)
28 1u8s_A Glycine cleavage system 99.4 3.9E-12 1.3E-16 111.6 11.8 78 38-116 89-172 (192)
29 2nyi_A Unknown protein; protei 99.3 8.6E-12 2.9E-16 110.0 11.1 74 39-116 2-79 (195)
30 2ko1_A CTR148A, GTP pyrophosph 98.5 2.9E-07 1E-11 69.5 6.6 64 41-110 4-67 (88)
31 3p96_A Phosphoserine phosphata 98.3 7E-06 2.4E-10 79.5 12.7 107 24-134 82-190 (415)
32 2f1f_A Acetolactate synthase i 97.7 6.8E-05 2.3E-09 64.1 6.8 75 41-117 2-76 (164)
33 1y7p_A Hypothetical protein AF 97.5 0.00015 5E-09 64.5 6.7 89 41-137 3-96 (223)
34 2pc6_A Probable acetolactate s 97.5 0.00019 6.6E-09 61.3 6.6 75 41-117 3-77 (165)
35 2fgc_A Acetolactate synthase, 97.4 0.00064 2.2E-08 59.4 8.8 75 40-116 27-101 (193)
36 2re1_A Aspartokinase, alpha an 97.3 0.00096 3.3E-08 56.7 8.7 106 41-155 24-133 (167)
37 2dt9_A Aspartokinase; protein- 97.0 0.0084 2.9E-07 50.7 11.9 106 41-155 15-125 (167)
38 2f06_A Conserved hypothetical 97.0 0.025 8.6E-07 46.2 14.3 96 40-155 4-99 (144)
39 2jhe_A Transcription regulator 96.7 0.0023 7.7E-08 53.7 6.3 66 44-116 2-68 (190)
40 1ygy_A PGDH, D-3-phosphoglycer 96.5 0.008 2.7E-07 60.2 9.1 66 41-110 453-518 (529)
41 4go7_X Aspartokinase; transfer 96.1 0.044 1.5E-06 48.0 10.7 110 41-157 34-147 (200)
42 1sc6_A PGDH, D-3-phosphoglycer 95.8 0.023 8E-07 55.0 8.5 65 41-109 330-394 (404)
43 2f06_A Conserved hypothetical 95.8 0.034 1.2E-06 45.4 8.2 58 44-109 74-131 (144)
44 2dtj_A Aspartokinase; protein- 95.6 0.12 4.1E-06 44.0 11.2 107 42-156 15-126 (178)
45 4gmf_A Yersiniabactin biosynth 95.3 0.0081 2.8E-07 57.6 3.2 57 122-185 1-57 (372)
46 2i6u_A Otcase, ornithine carba 94.4 0.33 1.1E-05 45.2 11.4 101 128-242 148-270 (307)
47 3s1t_A Aspartokinase; ACT doma 94.4 0.34 1.2E-05 41.4 10.7 105 43-155 17-126 (181)
48 1pvv_A Otcase, ornithine carba 93.9 0.34 1.2E-05 45.3 10.3 122 97-243 134-277 (315)
49 2re1_A Aspartokinase, alpha an 93.8 0.14 4.9E-06 43.0 7.0 61 42-115 103-166 (167)
50 1vlv_A Otcase, ornithine carba 93.4 0.35 1.2E-05 45.4 9.6 102 128-243 167-291 (325)
51 3gd5_A Otcase, ornithine carba 93.4 0.43 1.5E-05 44.8 10.0 101 127-242 156-278 (323)
52 4ep1_A Otcase, ornithine carba 93.3 0.55 1.9E-05 44.3 10.8 101 127-242 178-299 (340)
53 2dtj_A Aspartokinase; protein- 92.8 0.13 4.6E-06 43.7 5.3 63 41-116 94-159 (178)
54 3mtj_A Homoserine dehydrogenas 92.6 0.24 8.4E-06 48.4 7.5 69 39-111 356-425 (444)
55 3k5p_A D-3-phosphoglycerate de 92.1 0.39 1.3E-05 46.6 8.2 65 41-109 342-406 (416)
56 2qmx_A Prephenate dehydratase; 91.6 0.4 1.4E-05 44.1 7.3 66 43-111 201-267 (283)
57 2dt9_A Aspartokinase; protein- 91.6 0.43 1.5E-05 39.9 7.0 63 41-116 94-159 (167)
58 3mwb_A Prephenate dehydratase; 91.2 0.52 1.8E-05 44.0 7.7 68 41-111 200-269 (313)
59 3tpf_A Otcase, ornithine carba 91.0 1.3 4.5E-05 41.1 10.2 159 55-242 80-267 (307)
60 3ab4_A Aspartokinase; aspartat 90.8 2.1 7.1E-05 41.2 11.8 106 43-156 265-375 (421)
61 2qmw_A PDT, prephenate dehydra 90.1 0.65 2.2E-05 42.3 7.2 58 50-111 197-255 (267)
62 3luy_A Probable chorismate mut 90.0 0.97 3.3E-05 42.4 8.4 58 51-111 217-275 (329)
63 3l76_A Aspartokinase; alloster 90.0 0.98 3.4E-05 45.8 9.1 91 41-137 443-536 (600)
64 3grf_A Ornithine carbamoyltran 89.4 4.4 0.00015 37.9 12.4 101 128-242 161-288 (328)
65 1dxh_A Ornithine carbamoyltran 88.9 3.9 0.00013 38.4 11.6 158 55-240 89-277 (335)
66 1duv_G Octase-1, ornithine tra 88.7 2.3 7.9E-05 39.9 10.0 99 128-240 155-277 (333)
67 3s1t_A Aspartokinase; ACT doma 87.9 0.67 2.3E-05 39.5 5.3 64 41-117 95-161 (181)
68 4go7_X Aspartokinase; transfer 87.7 0.61 2.1E-05 40.7 4.9 63 42-117 115-180 (200)
69 2w37_A Ornithine carbamoyltran 87.1 2.6 9E-05 39.9 9.3 121 96-240 154-298 (359)
70 4a8t_A Putrescine carbamoyltra 86.7 4.6 0.00016 37.9 10.8 100 128-243 175-298 (339)
71 3rjz_A N-type ATP pyrophosphat 86.7 2.5 8.4E-05 37.8 8.5 78 128-209 4-95 (237)
72 1ml4_A Aspartate transcarbamoy 86.6 4.5 0.00015 37.5 10.5 97 128-236 155-269 (308)
73 4ekn_B Aspartate carbamoyltran 86.4 2 6.9E-05 39.8 8.0 96 127-236 150-264 (306)
74 4had_A Probable oxidoreductase 86.1 1.2 4E-05 41.2 6.3 70 127-213 22-95 (350)
75 4amu_A Ornithine carbamoyltran 85.6 2.9 9.9E-05 39.7 8.8 101 127-241 179-304 (365)
76 2ef0_A Ornithine carbamoyltran 85.4 4.4 0.00015 37.4 9.8 42 200-243 209-267 (301)
77 3a06_A 1-deoxy-D-xylulose 5-ph 85.2 1.9 6.6E-05 41.0 7.3 94 129-254 4-110 (376)
78 4a8p_A Putrescine carbamoyltra 84.9 6.5 0.00022 37.1 10.8 99 128-242 153-275 (355)
79 4gqa_A NAD binding oxidoreduct 84.4 1.4 4.8E-05 41.8 6.1 62 120-185 18-84 (412)
80 1zq6_A Otcase, ornithine carba 84.1 5.9 0.0002 37.5 10.1 57 175-242 244-320 (359)
81 1zhv_A Hypothetical protein AT 84.0 1.6 5.3E-05 35.6 5.3 61 44-115 64-127 (134)
82 4f2g_A Otcase 1, ornithine car 83.8 2.1 7.1E-05 39.8 6.8 43 198-242 210-269 (309)
83 4fb5_A Probable oxidoreductase 82.6 2.1 7.3E-05 39.6 6.5 59 121-185 19-82 (393)
84 3csu_A Protein (aspartate carb 82.0 5.3 0.00018 37.0 8.8 118 97-236 133-268 (310)
85 3fwz_A Inner membrane protein 80.6 2.6 9E-05 33.5 5.5 71 127-212 6-79 (140)
86 3rc1_A Sugar 3-ketoreductase; 79.6 2.8 9.7E-05 38.9 6.2 69 127-213 26-98 (350)
87 3cea_A MYO-inositol 2-dehydrog 79.1 5.3 0.00018 36.5 7.8 73 126-214 6-81 (346)
88 3ip3_A Oxidoreductase, putativ 78.6 4.5 0.00015 37.2 7.1 74 128-212 2-75 (337)
89 3euw_A MYO-inositol dehydrogen 78.4 2.5 8.7E-05 38.9 5.4 70 127-214 3-75 (344)
90 3q2i_A Dehydrogenase; rossmann 77.8 3.4 0.00012 38.2 6.1 53 126-185 11-64 (354)
91 1phz_A Protein (phenylalanine 77.4 3.1 0.00011 40.3 5.8 67 42-112 34-101 (429)
92 1r0k_A 1-deoxy-D-xylulose 5-ph 76.9 8.9 0.0003 36.7 8.8 55 128-188 4-60 (388)
93 3e9m_A Oxidoreductase, GFO/IDH 76.1 3.9 0.00013 37.5 6.0 72 127-215 4-78 (330)
94 1ydw_A AX110P-like protein; st 75.9 6.1 0.00021 36.6 7.3 87 126-228 4-95 (362)
95 3u3x_A Oxidoreductase; structu 75.1 7.2 0.00025 36.3 7.6 70 127-212 25-96 (361)
96 3evn_A Oxidoreductase, GFO/IDH 75.0 4 0.00014 37.4 5.7 50 127-184 4-54 (329)
97 3mz0_A Inositol 2-dehydrogenas 74.7 7.9 0.00027 35.5 7.7 70 128-212 2-74 (344)
98 3db2_A Putative NADPH-dependen 74.3 2.2 7.6E-05 39.5 3.8 70 127-214 4-76 (354)
99 3ohs_X Trans-1,2-dihydrobenzen 74.2 3.7 0.00013 37.6 5.3 70 128-213 2-75 (334)
100 3moi_A Probable dehydrogenase; 74.2 3.2 0.00011 39.1 4.9 70 128-213 2-73 (387)
101 3keo_A Redox-sensing transcrip 73.8 12 0.00041 32.7 8.1 98 127-239 83-186 (212)
102 2nvw_A Galactose/lactose metab 73.7 7.6 0.00026 37.9 7.6 53 127-183 38-92 (479)
103 4h3v_A Oxidoreductase domain p 73.5 4.1 0.00014 37.6 5.4 55 128-186 6-64 (390)
104 4h31_A Otcase, ornithine carba 73.5 12 0.00041 35.3 8.6 101 128-242 181-305 (358)
105 3c1m_A Probable aspartokinase; 73.3 8.9 0.0003 37.4 8.0 35 41-75 317-354 (473)
106 3uuw_A Putative oxidoreductase 73.1 2.7 9.3E-05 38.0 4.0 69 128-214 6-76 (308)
107 3sds_A Ornithine carbamoyltran 72.0 34 0.0012 32.1 11.4 130 96-241 153-312 (353)
108 3tvi_A Aspartokinase; structur 71.6 14 0.00049 35.8 8.9 81 43-137 299-383 (446)
109 3ab4_A Aspartokinase; aspartat 71.4 5.9 0.0002 38.0 6.1 62 42-116 344-408 (421)
110 3l76_A Aspartokinase; alloster 71.1 19 0.00065 36.2 10.0 65 44-113 272-337 (600)
111 1zvp_A Hypothetical protein VC 70.9 4.5 0.00015 32.8 4.3 35 43-77 72-109 (133)
112 4hkt_A Inositol 2-dehydrogenas 70.8 7.1 0.00024 35.6 6.3 67 128-213 3-72 (331)
113 3q98_A Transcarbamylase; rossm 69.4 24 0.00082 33.8 9.8 99 128-240 191-337 (399)
114 3dty_A Oxidoreductase, GFO/IDH 69.0 8.9 0.0003 36.1 6.7 74 127-213 11-94 (398)
115 3mah_A Aspartokinase; aspartat 68.9 9.7 0.00033 31.1 6.2 59 41-111 17-78 (157)
116 1ni5_A Putative cell cycle pro 68.3 15 0.0005 35.3 8.2 61 128-188 13-80 (433)
117 4huj_A Uncharacterized protein 67.7 9.7 0.00033 32.7 6.2 71 128-217 23-94 (220)
118 3ezy_A Dehydrogenase; structur 67.5 7.1 0.00024 35.9 5.6 71 128-215 2-75 (344)
119 3ec7_A Putative dehydrogenase; 67.1 21 0.0007 33.0 8.7 71 127-212 22-95 (357)
120 3kzn_A Aotcase, N-acetylornith 66.6 45 0.0015 31.3 11.0 56 176-242 245-320 (359)
121 1rwu_A Hypothetical UPF0250 pr 66.3 42 0.0014 26.1 8.9 70 36-112 30-102 (109)
122 3s2u_A UDP-N-acetylglucosamine 66.2 20 0.00069 33.1 8.5 84 128-218 2-106 (365)
123 2dt5_A AT-rich DNA-binding pro 65.8 11 0.00039 32.6 6.2 99 96-212 39-148 (211)
124 3btv_A Galactose/lactose metab 65.5 9.6 0.00033 36.5 6.3 50 127-183 19-73 (438)
125 3abi_A Putative uncharacterize 65.4 8.6 0.00029 35.8 5.7 71 126-212 14-85 (365)
126 3e18_A Oxidoreductase; dehydro 63.9 6.6 0.00022 36.5 4.6 50 127-185 4-54 (359)
127 2ho3_A Oxidoreductase, GFO/IDH 63.9 12 0.00041 33.9 6.3 73 128-216 1-74 (325)
128 3rsc_A CALG2; TDP, enediyne, s 63.6 45 0.0015 30.6 10.4 106 123-237 15-151 (415)
129 3llv_A Exopolyphosphatase-rela 63.5 9.6 0.00033 29.8 4.9 69 128-211 6-77 (141)
130 2p2s_A Putative oxidoreductase 63.5 14 0.00049 33.6 6.8 68 128-212 4-74 (336)
131 1zh8_A Oxidoreductase; TM0312, 63.2 22 0.00075 32.5 8.1 72 126-213 16-91 (340)
132 3v5n_A Oxidoreductase; structu 62.7 6.3 0.00022 37.5 4.3 76 127-213 36-119 (417)
133 3ic5_A Putative saccharopine d 62.0 27 0.00091 25.7 7.1 72 128-212 5-77 (118)
134 3qhp_A Type 1 capsular polysac 61.7 35 0.0012 26.7 8.2 80 129-213 3-83 (166)
135 1tlt_A Putative oxidoreductase 61.3 15 0.0005 33.2 6.4 50 127-184 4-55 (319)
136 3d6n_B Aspartate carbamoyltran 61.3 77 0.0026 28.8 11.2 153 55-242 78-256 (291)
137 3d4o_A Dipicolinate synthase s 60.8 45 0.0016 29.8 9.6 104 128-253 155-259 (293)
138 2g1u_A Hypothetical protein TM 60.5 6.9 0.00024 31.4 3.6 77 122-213 13-93 (155)
139 3l4b_C TRKA K+ channel protien 60.4 11 0.00038 32.0 5.2 70 129-212 1-73 (218)
140 2w6k_A COBE; biosynthetic prot 60.4 21 0.00071 29.2 6.5 67 122-188 4-75 (145)
141 3tvi_A Aspartokinase; structur 60.3 17 0.00058 35.3 6.9 61 42-113 374-437 (446)
142 1nvm_B Acetaldehyde dehydrogen 60.1 32 0.0011 31.5 8.5 74 127-212 3-79 (312)
143 1pg5_A Aspartate carbamoyltran 59.7 39 0.0013 30.9 9.0 156 55-236 83-261 (299)
144 1lss_A TRK system potassium up 59.5 21 0.00073 27.2 6.3 72 128-212 4-77 (140)
145 3c1m_A Probable aspartokinase; 59.5 17 0.00059 35.3 6.9 62 43-115 405-469 (473)
146 1wy5_A TILS, hypothetical UPF0 58.8 25 0.00085 32.0 7.5 60 128-188 24-91 (317)
147 3jtm_A Formate dehydrogenase, 57.2 33 0.0011 32.0 8.2 157 128-313 164-332 (351)
148 1h6d_A Precursor form of gluco 56.8 15 0.00053 35.0 5.9 51 126-183 81-132 (433)
149 3mah_A Aspartokinase; aspartat 56.7 11 0.00038 30.7 4.3 62 42-116 88-152 (157)
150 3nkl_A UDP-D-quinovosamine 4-d 56.6 40 0.0014 26.0 7.6 37 127-166 3-39 (141)
151 3beo_A UDP-N-acetylglucosamine 55.3 90 0.0031 27.7 10.7 107 126-236 6-129 (375)
152 2nac_A NAD-dependent formate d 54.8 39 0.0013 32.1 8.3 155 128-313 191-359 (393)
153 2cwd_A Low molecular weight ph 54.4 28 0.00097 28.5 6.5 81 127-214 3-93 (161)
154 1oth_A Protein (ornithine tran 53.9 66 0.0023 29.7 9.5 119 97-240 134-274 (321)
155 3otg_A CALG1; calicheamicin, T 53.8 50 0.0017 30.1 8.8 55 125-188 17-74 (412)
156 4dio_A NAD(P) transhydrogenase 53.6 42 0.0014 32.1 8.3 159 57-235 124-312 (405)
157 3e82_A Putative oxidoreductase 53.3 26 0.0009 32.4 6.8 35 126-164 5-41 (364)
158 3bio_A Oxidoreductase, GFO/IDH 53.2 9 0.00031 34.9 3.4 34 127-164 8-42 (304)
159 2gcg_A Glyoxylate reductase/hy 53.0 86 0.0029 28.6 10.2 153 128-313 155-322 (330)
160 2der_A TRNA-specific 2-thiouri 52.6 20 0.0007 33.9 5.9 57 127-188 16-85 (380)
161 3h4t_A Glycosyltransferase GTF 52.5 1E+02 0.0034 28.4 10.8 100 129-237 1-127 (404)
162 3k32_A Uncharacterized protein 52.3 26 0.0009 29.7 6.1 56 128-188 6-64 (203)
163 4etn_A LMPTP, low molecular we 52.1 20 0.00068 30.4 5.2 81 127-214 33-120 (184)
164 3l9w_A Glutathione-regulated p 51.5 15 0.00051 35.1 4.8 50 128-188 4-54 (413)
165 2d0i_A Dehydrogenase; structur 51.0 74 0.0025 29.2 9.4 152 127-313 145-311 (333)
166 2vt3_A REX, redox-sensing tran 50.4 13 0.00044 32.4 3.8 124 96-237 44-181 (215)
167 3p2y_A Alanine dehydrogenase/p 50.1 39 0.0013 32.0 7.4 161 57-235 118-302 (381)
168 3hbm_A UDP-sugar hydrolase; PS 50.0 31 0.0011 31.1 6.5 81 129-225 1-88 (282)
169 1f0k_A MURG, UDP-N-acetylgluco 49.7 76 0.0026 28.2 9.2 78 129-213 7-105 (364)
170 3m2t_A Probable dehydrogenase; 49.3 12 0.00043 34.5 3.8 48 127-182 4-53 (359)
171 3uog_A Alcohol dehydrogenase; 49.2 73 0.0025 29.1 9.2 79 127-217 189-270 (363)
172 3oti_A CALG3; calicheamicin, T 48.4 66 0.0022 29.4 8.7 52 127-188 19-73 (398)
173 2h9z_A Hypothetical protein HP 48.1 43 0.0015 24.7 5.9 69 36-112 9-79 (86)
174 3c85_A Putative glutathione-re 48.0 22 0.00076 29.0 4.8 71 128-212 39-113 (183)
175 3tsa_A SPNG, NDP-rhamnosyltran 47.3 64 0.0022 29.2 8.4 51 128-187 1-54 (391)
176 3c1a_A Putative oxidoreductase 47.1 12 0.0004 33.9 3.2 39 123-165 5-44 (315)
177 3oj0_A Glutr, glutamyl-tRNA re 47.0 31 0.0011 27.0 5.4 68 128-212 21-88 (144)
178 4g65_A TRK system potassium up 46.9 19 0.00066 34.8 4.8 71 127-211 2-75 (461)
179 4fzr_A SSFS6; structural genom 46.7 1.3E+02 0.0045 27.2 10.5 53 127-188 14-69 (398)
180 2cdq_A Aspartokinase; aspartat 46.6 24 0.00084 34.8 5.6 65 41-116 419-485 (510)
181 3nbm_A PTS system, lactose-spe 46.5 23 0.00077 27.4 4.3 63 126-188 4-85 (108)
182 4hy3_A Phosphoglycerate oxidor 46.1 66 0.0023 30.2 8.3 155 128-315 176-343 (365)
183 3ia7_A CALG4; glycosysltransfe 46.0 87 0.003 28.2 9.1 101 128-237 4-135 (402)
184 2hma_A Probable tRNA (5-methyl 45.4 25 0.00086 33.1 5.3 57 127-188 8-77 (376)
185 3d1l_A Putative NADP oxidoredu 44.3 13 0.00045 32.5 3.0 69 128-215 10-79 (266)
186 1k92_A Argininosuccinate synth 44.3 41 0.0014 32.7 6.7 57 127-188 9-71 (455)
187 2w2k_A D-mandelate dehydrogena 43.7 91 0.0031 28.7 8.9 114 128-267 163-286 (348)
188 1js1_X Transcarbamylase; alpha 43.4 68 0.0023 29.7 7.8 69 172-243 187-281 (324)
189 1p8a_A Protein tyrosine phosph 43.1 40 0.0014 27.0 5.6 82 127-214 3-89 (146)
190 3bl5_A Queuosine biosynthesis 42.3 62 0.0021 27.0 6.9 55 129-188 4-63 (219)
191 2rir_A Dipicolinate synthase, 41.7 73 0.0025 28.4 7.7 90 127-235 156-246 (300)
192 3a2k_A TRNA(Ile)-lysidine synt 41.3 28 0.00097 33.6 5.1 60 128-188 18-85 (464)
193 1vl2_A Argininosuccinate synth 41.3 43 0.0015 32.3 6.2 58 126-188 12-73 (421)
194 2j6i_A Formate dehydrogenase; 41.2 88 0.003 29.1 8.4 158 127-313 163-338 (364)
195 2dbq_A Glyoxylate reductase; D 41.0 70 0.0024 29.3 7.6 152 128-313 150-315 (334)
196 2yfk_A Aspartate/ornithine car 41.0 1.4E+02 0.0049 28.5 9.9 101 128-242 188-337 (418)
197 3oqb_A Oxidoreductase; structu 40.9 48 0.0017 30.5 6.5 71 127-214 5-93 (383)
198 3i23_A Oxidoreductase, GFO/IDH 40.5 23 0.00079 32.5 4.1 45 128-182 2-48 (349)
199 3kux_A Putative oxidoreductase 40.2 44 0.0015 30.5 6.0 69 123-211 2-74 (352)
200 3gdo_A Uncharacterized oxidore 39.9 37 0.0013 31.2 5.5 34 127-164 4-39 (358)
201 2iyf_A OLED, oleandomycin glyc 39.7 1.5E+02 0.0051 27.1 9.8 100 128-237 7-136 (430)
202 3jvi_A Protein tyrosine phosph 39.7 55 0.0019 26.8 6.0 81 128-214 4-93 (161)
203 1ygy_A PGDH, D-3-phosphoglycer 38.9 2.3E+02 0.0078 27.6 11.3 112 127-267 141-262 (529)
204 3o9z_A Lipopolysaccaride biosy 38.9 53 0.0018 29.6 6.3 72 126-211 1-79 (312)
205 2ahr_A Putative pyrroline carb 38.5 22 0.00076 30.8 3.5 69 127-215 2-71 (259)
206 3v7e_A Ribosome-associated pro 37.2 25 0.00084 25.6 3.0 18 171-188 43-60 (82)
207 3rh0_A Arsenate reductase; oxi 36.6 1.2E+02 0.0042 24.4 7.5 84 122-212 14-100 (148)
208 3gg9_A D-3-phosphoglycerate de 35.8 72 0.0025 29.7 6.8 154 128-313 160-327 (352)
209 2ixa_A Alpha-N-acetylgalactosa 35.8 74 0.0025 30.1 7.1 49 127-183 19-71 (444)
210 3tri_A Pyrroline-5-carboxylate 35.4 43 0.0015 29.8 5.0 51 128-185 3-54 (280)
211 3ijp_A DHPR, dihydrodipicolina 35.3 33 0.0011 31.2 4.2 36 127-165 20-56 (288)
212 1np3_A Ketol-acid reductoisome 35.0 78 0.0027 28.9 6.8 47 128-184 16-63 (338)
213 3t38_A Arsenate reductase; low 35.0 1.6E+02 0.0056 25.3 8.5 81 126-214 79-163 (213)
214 2ph5_A Homospermidine synthase 34.7 56 0.0019 32.0 5.9 132 127-271 12-161 (480)
215 3dm5_A SRP54, signal recogniti 34.7 1.9E+02 0.0065 27.8 9.7 152 54-214 30-192 (443)
216 2fhm_A Probable acylphosphatas 34.3 1.2E+02 0.004 22.3 6.5 58 101-162 16-73 (91)
217 2iya_A OLEI, oleandomycin glyc 34.2 2.7E+02 0.0092 25.3 10.8 100 127-236 11-140 (424)
218 1zzg_A Glucose-6-phosphate iso 34.1 32 0.0011 33.0 4.1 72 97-188 101-181 (415)
219 2cdq_A Aspartokinase; aspartat 33.9 48 0.0016 32.6 5.4 35 42-76 341-378 (510)
220 2vsy_A XCC0866; transferase, g 33.7 2.6E+02 0.0089 26.5 10.7 80 125-212 202-290 (568)
221 1xea_A Oxidoreductase, GFO/IDH 33.6 22 0.00077 32.1 2.8 49 128-184 2-51 (323)
222 3r5t_A Ferric vibriobactin ABC 32.9 2.2E+02 0.0075 25.0 9.4 78 121-213 18-95 (305)
223 3dzc_A UDP-N-acetylglucosamine 32.8 2.9E+02 0.01 25.3 10.8 105 127-236 24-145 (396)
224 2nz2_A Argininosuccinate synth 32.8 76 0.0026 30.3 6.5 56 128-188 5-64 (413)
225 1mx3_A CTBP1, C-terminal bindi 32.5 2.4E+02 0.0083 25.9 9.9 155 127-313 167-336 (347)
226 1v4v_A UDP-N-acetylglucosamine 32.4 2E+02 0.0069 25.5 9.2 106 128-237 5-126 (376)
227 3pp8_A Glyoxylate/hydroxypyruv 32.4 2.1E+02 0.007 26.0 9.2 155 128-315 139-305 (315)
228 2czc_A Glyceraldehyde-3-phosph 32.0 1.3E+02 0.0044 27.4 7.8 51 128-185 2-52 (334)
229 1id1_A Putative potassium chan 31.8 70 0.0024 25.1 5.3 72 128-212 3-79 (153)
230 1v8b_A Adenosylhomocysteinase; 31.8 68 0.0023 31.3 6.1 99 127-252 256-357 (479)
231 3u7q_B Nitrogenase molybdenum- 31.5 57 0.0019 32.2 5.5 173 42-221 221-455 (523)
232 2r6j_A Eugenol synthase 1; phe 31.5 1.8E+02 0.0063 25.3 8.6 73 129-212 12-87 (318)
233 1u2p_A Ptpase, low molecular w 31.4 77 0.0026 25.8 5.5 81 127-215 3-93 (163)
234 2g76_A 3-PGDH, D-3-phosphoglyc 31.4 1.2E+02 0.004 28.0 7.4 156 127-313 164-330 (335)
235 3aek_A Light-independent proto 31.3 2.1E+02 0.007 27.2 9.4 195 42-251 183-423 (437)
236 2f9f_A First mannosyl transfer 31.1 1.9E+02 0.0063 22.9 7.9 79 128-213 23-106 (177)
237 4hwg_A UDP-N-acetylglucosamine 31.0 1.9E+02 0.0064 26.8 8.9 110 128-245 9-135 (385)
238 2ekl_A D-3-phosphoglycerate de 30.9 2.3E+02 0.008 25.4 9.3 129 127-284 141-283 (313)
239 1l7d_A Nicotinamide nucleotide 30.8 1.6E+02 0.0056 27.2 8.5 91 127-228 171-287 (384)
240 3h9u_A Adenosylhomocysteinase; 30.7 69 0.0024 30.9 5.8 86 128-235 211-298 (436)
241 2lbw_A H/ACA ribonucleoprotein 30.6 66 0.0023 25.0 4.8 18 171-188 53-70 (121)
242 3by5_A Cobalamin biosynthesis 30.5 94 0.0032 25.5 5.9 31 158-188 41-71 (155)
243 3hdj_A Probable ornithine cycl 30.1 2.8E+02 0.0095 25.0 9.7 100 128-246 121-225 (313)
244 1tdj_A Biosynthetic threonine 30.0 46 0.0016 32.8 4.5 35 41-77 337-371 (514)
245 3n8i_A Low molecular weight ph 29.8 85 0.0029 25.6 5.5 83 127-215 4-95 (157)
246 2h78_A Hibadh, 3-hydroxyisobut 29.7 44 0.0015 29.6 4.1 64 128-212 3-67 (302)
247 3fhl_A Putative oxidoreductase 29.7 30 0.001 31.9 3.0 65 127-211 4-72 (362)
248 3doj_A AT3G25530, dehydrogenas 29.3 42 0.0014 30.1 3.9 66 126-212 19-85 (310)
249 2wmy_A WZB, putative acid phos 29.2 97 0.0033 24.9 5.7 80 128-214 8-91 (150)
250 3gt0_A Pyrroline-5-carboxylate 29.0 32 0.0011 29.7 2.9 50 128-184 2-53 (247)
251 1yb4_A Tartronic semialdehyde 27.8 44 0.0015 29.3 3.7 19 128-146 3-22 (295)
252 2fek_A Low molecular weight pr 27.6 1.1E+02 0.0037 25.2 5.9 80 128-214 22-105 (167)
253 2ale_A SNU13, NHP2/L7AE family 27.3 82 0.0028 25.1 4.9 18 171-188 65-82 (134)
254 2ywb_A GMP synthase [glutamine 27.2 2.4E+02 0.0082 27.3 9.2 55 129-188 210-269 (503)
255 1pjz_A Thiopurine S-methyltran 27.1 1.5E+02 0.0051 24.4 6.8 28 128-161 23-50 (203)
256 3p52_A NH(3)-dependent NAD(+) 27.1 1.9E+02 0.0067 25.2 7.8 57 128-188 26-87 (249)
257 3ff1_A Glucose-6-phosphate iso 26.6 71 0.0024 31.0 5.1 74 96-189 117-200 (446)
258 3d64_A Adenosylhomocysteinase; 26.5 99 0.0034 30.3 6.2 88 127-236 276-365 (494)
259 2glx_A 1,5-anhydro-D-fructose 26.4 1.2E+02 0.0043 26.9 6.6 70 129-215 1-73 (332)
260 3okp_A GDP-mannose-dependent a 26.3 3.3E+02 0.011 23.9 10.9 103 127-236 3-121 (394)
261 1rlg_A 50S ribosomal protein L 26.0 1.3E+02 0.0046 23.0 5.8 54 143-203 33-87 (119)
262 2q8n_A Glucose-6-phosphate iso 26.0 51 0.0018 32.0 4.0 55 130-188 142-204 (460)
263 1ulr_A Putative acylphosphatas 26.0 1.9E+02 0.0065 21.0 6.7 58 101-162 16-73 (88)
264 1wwk_A Phosphoglycerate dehydr 25.7 1.5E+02 0.0052 26.6 7.0 127 127-284 141-281 (307)
265 2y1e_A 1-deoxy-D-xylulose 5-ph 25.7 1.4E+02 0.0048 28.4 6.8 56 127-188 20-78 (398)
266 1leh_A Leucine dehydrogenase; 25.6 95 0.0032 29.0 5.7 86 128-235 173-260 (364)
267 1x7d_A Ornithine cyclodeaminas 25.3 2.4E+02 0.0083 25.9 8.4 96 128-242 129-234 (350)
268 4ew6_A D-galactose-1-dehydroge 25.2 2E+02 0.0069 25.8 7.8 92 127-223 24-149 (330)
269 4dll_A 2-hydroxy-3-oxopropiona 25.1 74 0.0025 28.7 4.7 66 127-213 30-96 (320)
270 3oy2_A Glycosyltransferase B73 25.0 2.5E+02 0.0087 25.1 8.6 56 171-228 234-297 (413)
271 3cky_A 2-hydroxymethyl glutara 24.9 45 0.0016 29.4 3.2 20 127-146 3-23 (301)
272 3ot5_A UDP-N-acetylglucosamine 24.9 3.3E+02 0.011 25.1 9.4 105 128-236 27-148 (403)
273 3oa2_A WBPB; oxidoreductase, s 24.7 1.1E+02 0.0039 27.4 5.9 68 126-211 1-80 (318)
274 3upl_A Oxidoreductase; rossman 24.4 3.9E+02 0.013 25.7 9.9 64 97-181 5-70 (446)
275 4fb5_A Probable oxidoreductase 24.4 82 0.0028 28.6 5.0 75 141-223 85-162 (393)
276 2yfq_A Padgh, NAD-GDH, NAD-spe 24.0 1.1E+02 0.0039 29.2 6.0 163 128-311 212-394 (421)
277 1sur_A PAPS reductase; assimil 23.8 1E+02 0.0034 25.9 5.1 54 130-188 46-104 (215)
278 3j21_Z 50S ribosomal protein L 23.8 61 0.0021 24.2 3.3 17 171-187 47-63 (99)
279 3hbm_A UDP-sugar hydrolase; PS 23.8 1.2E+02 0.004 27.2 5.8 76 128-213 157-234 (282)
280 2ioj_A Hypothetical protein AF 23.7 64 0.0022 25.4 3.5 32 157-188 74-105 (139)
281 2fc3_A 50S ribosomal protein L 23.6 1.4E+02 0.0048 23.1 5.5 54 143-203 34-88 (124)
282 3v7q_A Probable ribosomal prot 23.3 66 0.0023 24.1 3.4 28 171-203 51-78 (101)
283 1xbi_A 50S ribosomal protein L 23.3 1.1E+02 0.0038 23.6 4.9 28 171-203 62-89 (120)
284 1f2v_A COBH, precorrin-8X meth 23.1 84 0.0029 27.5 4.4 129 52-192 66-203 (219)
285 1vgv_A UDP-N-acetylglucosamine 23.0 3.3E+02 0.011 24.0 8.8 103 129-236 1-120 (384)
286 2tmg_A Protein (glutamate dehy 23.0 1.8E+02 0.0061 27.7 7.1 102 128-239 209-319 (415)
287 2xzm_U Ribosomal protein L7AE 22.8 1.2E+02 0.0041 23.8 5.0 18 171-188 57-74 (126)
288 1vq8_F 50S ribosomal protein L 22.8 1.4E+02 0.0046 23.1 5.3 28 171-203 62-89 (120)
289 1cqm_A Ribosomal protein S6; a 22.6 1.5E+02 0.0051 22.2 5.3 60 52-121 19-87 (101)
290 1x13_A NAD(P) transhydrogenase 22.6 1.5E+02 0.0051 27.9 6.5 92 128-230 172-287 (401)
291 3trg_A Acylphosphatase; fatty 22.5 1.9E+02 0.0064 21.6 5.8 59 101-163 26-84 (98)
292 3luc_A Protein argonaute-2; MI 22.4 2E+02 0.007 22.5 6.4 81 99-188 30-111 (138)
293 1w2i_A Acylphosphatase; hydrol 22.2 1.9E+02 0.0065 21.1 5.7 58 101-162 18-75 (91)
294 3loq_A Universal stress protei 22.1 3.7E+02 0.013 23.0 9.5 107 126-235 168-291 (294)
295 3k96_A Glycerol-3-phosphate de 22.1 1.1E+02 0.0039 28.2 5.4 21 127-147 28-49 (356)
296 3dhn_A NAD-dependent epimerase 22.0 1.6E+02 0.0056 24.1 6.1 17 196-212 59-75 (227)
297 2e18_A NH(3)-dependent NAD(+) 21.9 2.6E+02 0.009 24.0 7.6 57 129-188 23-82 (257)
298 3o85_A Ribosomal protein L7AE; 21.7 1.3E+02 0.0045 23.4 5.0 49 134-188 32-81 (122)
299 1mio_B Nitrogenase molybdenum 21.7 3.7E+02 0.013 25.5 9.2 178 43-232 170-409 (458)
300 2pi1_A D-lactate dehydrogenase 21.6 2.9E+02 0.0099 25.2 8.1 102 128-259 141-252 (334)
301 3e7d_A COBH, precorrin-8X meth 21.5 96 0.0033 26.9 4.4 59 132-192 133-196 (212)
302 3ba1_A HPPR, hydroxyphenylpyru 21.3 3.8E+02 0.013 24.4 8.8 149 128-313 164-326 (333)
303 2wm3_A NMRA-like family domain 21.3 3.9E+02 0.013 22.8 8.7 32 178-212 49-80 (299)
304 1b0z_A Protein (phosphoglucose 21.1 88 0.003 30.2 4.5 27 241-267 303-329 (445)
305 2vns_A Metalloreductase steap3 21.0 69 0.0023 27.0 3.4 67 127-215 27-94 (215)
306 3qwb_A Probable quinone oxidor 21.0 2.2E+02 0.0075 25.3 7.1 76 127-214 148-227 (334)
307 1qyc_A Phenylcoumaran benzylic 20.7 2.9E+02 0.01 23.6 7.8 32 178-212 54-85 (308)
308 3aog_A Glutamate dehydrogenase 20.6 1.8E+02 0.0061 28.0 6.6 101 128-239 235-344 (440)
309 3on1_A BH2414 protein; structu 20.6 64 0.0022 24.1 2.8 27 172-203 51-77 (101)
310 3ggo_A Prephenate dehydrogenas 20.6 60 0.0021 29.4 3.1 73 128-217 33-107 (314)
311 1qv9_A F420-dependent methylen 20.4 1.5E+02 0.005 26.5 5.4 33 156-188 65-98 (283)
312 3ecs_A Translation initiation 20.4 2.9E+02 0.01 25.2 7.8 73 131-211 123-196 (315)
313 3pdu_A 3-hydroxyisobutyrate de 20.2 63 0.0022 28.4 3.1 18 129-146 2-20 (287)
314 3pdi_A Nitrogenase MOFE cofact 20.2 1.1E+02 0.0037 29.7 5.0 195 42-250 203-446 (483)
315 1qyd_A Pinoresinol-lariciresin 20.2 1.5E+02 0.0052 25.6 5.7 31 179-212 54-84 (313)
316 2gas_A Isoflavone reductase; N 20.0 2.6E+02 0.0089 24.0 7.3 32 178-212 53-84 (307)
No 1
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=100.00 E-value=1.4e-71 Score=521.58 Aligned_cols=278 Identities=32% Similarity=0.543 Sum_probs=258.5
Q ss_pred CCcceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcccc
Q 020508 38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR 117 (325)
Q Consensus 38 ~~~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~ 117 (325)
.+..++++|++|+||||||++||++|+++|+||++++|+.+..+|.|+|+++++.|+ ..+.++|+++|+++|++++++
T Consensus 4 ~~~~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~-~~~~~~L~~~f~~la~~l~m~- 81 (286)
T 3n0v_A 4 RAPDTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPD-DFDEAGFRAGLAERSEAFGMA- 81 (286)
T ss_dssp ---CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCS-SCCHHHHHHHHHHHHGGGTCE-
T ss_pred ccCCcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCC-CCCHHHHHHHHHHHHHHcCCE-
Confidence 345689999999999999999999999999999999999878899999999999998 788999999999999999998
Q ss_pred eeeeecCCCCCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecC-CCCh--h
Q 020508 118 SVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA-KENE--R 194 (325)
Q Consensus 118 ~~~~~~~~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~-~~~~--~ 194 (325)
|++.+.++|+||+||+||+||||++|++++++|+++++|++|+||+++ +.++|+++|||+++++. ..+. .
T Consensus 82 --~~l~~~~~~~ri~vl~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~-----~~~~A~~~gIp~~~~~~~~~~r~~~ 154 (286)
T 3n0v_A 82 --FELTAPNHRPKVVIMVSKADHCLNDLLYRQRIGQLGMDVVAVVSNHPD-----LEPLAHWHKIPYYHFALDPKDKPGQ 154 (286)
T ss_dssp --EEEECTTCCCEEEEEESSCCHHHHHHHHHHHTTSSCCEEEEEEESSST-----THHHHHHTTCCEEECCCBTTBHHHH
T ss_pred --EEeecCCCCcEEEEEEeCCCCCHHHHHHHHHCCCCCcEEEEEEeCcHH-----HHHHHHHcCCCEEEeCCCcCCHHHH
Confidence 778877889999999999999999999999999999999999999864 46789999999998873 2222 2
Q ss_pred HHHHHHHhc--CCCEEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhCCcEeEEEEEEecCCCCCCC
Q 020508 195 EEELLELVQ--NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGP 272 (325)
Q Consensus 195 ~~~~~~~l~--~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvh~v~~~~D~G~ 272 (325)
++++.+.|+ ++|++|++|||+|||+++++.|++++||+||||||+|||++|++||+.+|++.+|+|+|+|++++|+||
T Consensus 155 ~~~~~~~l~~~~~Dlivla~y~~il~~~~l~~~~~~~iNiHpSlLP~~rG~~p~~~Ai~~G~~~~G~Tvh~v~~~lD~Gp 234 (286)
T 3n0v_A 155 ERKVLQVIEETGAELVILARYMQVLSPELCRRLDGWAINIHHSLLPGFKGAKPYHQAYNKGVKMVGATAHYINNDLDEGP 234 (286)
T ss_dssp HHHHHHHHHHHTCSEEEESSCCSCCCHHHHHHTTTSEEEEEECSSTTCCCSCHHHHHHHHTCSEEEEEEEECCSSTTCSC
T ss_pred HHHHHHHHHhcCCCEEEecccccccCHHHHhhhcCCeEEeccccccCCCCccHHHHHHHcCCCeEEEEEEEEcCCCCCCc
Confidence 457888887 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCceeeecCCceeeC
Q 020508 273 IIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF 325 (325)
Q Consensus 273 Ii~Q~~~~I~~~dt~~~l~~r~~~~~~~ll~~al~~i~~g~~~~~~~~~~~~~ 325 (325)
||.|+.++|.++||.++|.+|+.++++++++++++++++|++...+ +|||||
T Consensus 235 Ii~Q~~~~i~~~dt~~~L~~r~~~~e~~~l~~av~~~~~~~~~~~~-~~~~vf 286 (286)
T 3n0v_A 235 IIAQGVEVVDHSHYPEDLIAKGRDIECLTLARAVGYHIERRVFLNA-NRTVVL 286 (286)
T ss_dssp EEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEET-TEEEEC
T ss_pred eeEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCEEEcC-CEEEEC
Confidence 9999999999999999999999999999999999999999999885 999998
No 2
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=100.00 E-value=2.5e-71 Score=522.65 Aligned_cols=277 Identities=45% Similarity=0.674 Sum_probs=258.5
Q ss_pred cceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhccccee
Q 020508 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSV 119 (325)
Q Consensus 40 ~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~~~ 119 (325)
..++++|++|+||||||++||++|+++|+||++++|++++.+|.|+|+++++.|+...+.++|+++|++++++++++
T Consensus 20 ~~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~~~~~~~L~~~l~~la~~l~m~--- 96 (302)
T 3o1l_A 20 MRTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTLPFDLDGFREAFTPIAEEFSMD--- 96 (302)
T ss_dssp CCEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGSSSCHHHHHHHHHHHHHHHTCE---
T ss_pred cceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCCCCCHHHHHHHHHHHHHHhCCe---
Confidence 35799999999999999999999999999999999998888999999999999874478999999999999999998
Q ss_pred eeecCCCCCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEec-CCCC--hhHH
Q 020508 120 VRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKEN--EREE 196 (325)
Q Consensus 120 ~~~~~~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~-~~~~--~~~~ 196 (325)
|++.+.++|+||+||+||+||||++|++++++|+++++|++|+||+++ +.++|+++|||+++++ ++.+ ..++
T Consensus 97 ~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~I~~Visn~~~-----~~~~A~~~gIp~~~~~~~~~~r~~~~~ 171 (302)
T 3o1l_A 97 WRITDSAQKKRVVLMASRESHCLADLLHRWHSDELDCDIACVISNHQD-----LRSMVEWHDIPYYHVPVDPKDKEPAFA 171 (302)
T ss_dssp EEEEETTSCCEEEEEECSCCHHHHHHHHHHHTTCSCSEEEEEEESSST-----THHHHHTTTCCEEECCCCSSCCHHHHH
T ss_pred eeecccCCCcEEEEEEeCCchhHHHHHHHHHCCCCCcEEEEEEECcHH-----HHHHHHHcCCCEEEcCCCcCCHHHHHH
Confidence 677777789999999999999999999999999999999999999863 4688999999999886 3222 2346
Q ss_pred HHHHHhc--CCCEEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhCCcEeEEEEEEecCCCCCCCeE
Q 020508 197 ELLELVQ--NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPII 274 (325)
Q Consensus 197 ~~~~~l~--~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvh~v~~~~D~G~Ii 274 (325)
++.+.|+ ++|++|++|||+|||+++++.|++++||+||||||+|||++|++||+.+|++.+|+|+|+|++++|+||||
T Consensus 172 ~~~~~l~~~~~DliVlagym~IL~~~~l~~~~~~~INiHpSlLP~frG~~p~~~Ai~~G~k~tG~TvH~v~~~lD~GpII 251 (302)
T 3o1l_A 172 EVSRLVGHHQADVVVLARYMQILPPQLCREYAHQVINIHHSFLPSFVGAKPYHQASLRGVKLIGATCHYVTEELDAGPII 251 (302)
T ss_dssp HHHHHHHHTTCSEEEESSCCSCCCTTHHHHTTTCEEEEESSCTTSSCSSCHHHHHHHHTCSEEEEEEEECCSSTTCSCEE
T ss_pred HHHHHHHHhCCCEEEHhHhhhhcCHHHHhhhhCCeEEeCcccccCCCCccHHHHHHHcCCCeEEEEEEEECCCCcCCCeE
Confidence 7888887 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCceeeecCCceeeC
Q 020508 275 EQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF 325 (325)
Q Consensus 275 ~Q~~~~I~~~dt~~~l~~r~~~~~~~ll~~al~~i~~g~~~~~~~~~~~~~ 325 (325)
.|+.++|.++||.++|.+|+.++++++++++++++++|++...+ +|||||
T Consensus 252 ~Q~~v~I~~~dt~~~L~~r~~~~e~~~l~~av~~~~~~~v~~~~-~~~~vf 301 (302)
T 3o1l_A 252 EQDVVRVSHRDSIENMVRFGRDVEKMVLARGLRAHLEDRVLVHD-NKTVVF 301 (302)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEET-TEEEEC
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCEEEcC-CEEEEc
Confidence 99999999999999999999999999999999999999999885 999998
No 3
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=100.00 E-value=3.3e-71 Score=520.20 Aligned_cols=280 Identities=34% Similarity=0.591 Sum_probs=256.9
Q ss_pred CCCcceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeC--CCCCChHHHHHHHHhhhhhhc
Q 020508 37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFD--PIKWPREQMDEDFFKLSKMFN 114 (325)
Q Consensus 37 ~~~~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p--~~~~~~~~L~~~l~~l~~~l~ 114 (325)
+....++++|++|+||||||++||++|+++|+||++++|+.+..+|.|+|+++++.+ +...+.++|+++|+++|++++
T Consensus 5 ~~~~~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~~la~~~~ 84 (292)
T 3lou_A 5 PQRPHQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFEPIAERFR 84 (292)
T ss_dssp ---CCEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHHHHHHHHT
T ss_pred cCCCCcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCCCHHHHHHHHHHHHHhcC
Confidence 334568999999999999999999999999999999999987889999999999988 434689999999999999999
Q ss_pred ccceeeeecCCCCCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEec-CCCCh
Q 020508 115 AMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKENE 193 (325)
Q Consensus 115 ~~~~~~~~~~~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~-~~~~~ 193 (325)
++ |++.+.++|+||+||+||+||||++|++++++|+++++|++|+||+++ +.++|+++|||+++++ +..+.
T Consensus 85 m~---~~l~~~~~~~ri~vl~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~-----~~~~A~~~gIp~~~~~~~~~~r 156 (292)
T 3lou_A 85 MQ---WAIHDVAARPKVLIMVSKLEHCLADLLFRWKMGELKMDIVGIVSNHPD-----FAPLAAQHGLPFRHFPITADTK 156 (292)
T ss_dssp CE---EEEEETTSCCEEEEEECSCCHHHHHHHHHHHHTSSCCEEEEEEESSST-----THHHHHHTTCCEEECCCCSSCH
T ss_pred cE---EEeeccCCCCEEEEEEcCCCcCHHHHHHHHHcCCCCcEEEEEEeCcHH-----HHHHHHHcCCCEEEeCCCcCCH
Confidence 98 777777788999999999999999999999999999999999999964 3678999999999887 32222
Q ss_pred --hHHHHHHHhc--CCCEEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhCCcEeEEEEEEecCCCC
Q 020508 194 --REEELLELVQ--NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELD 269 (325)
Q Consensus 194 --~~~~~~~~l~--~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvh~v~~~~D 269 (325)
.++++.+.|+ ++|++|++|||+|||+++++.|++++||+|||+||+|||++|++||+.+|++.+|+|+|+|++++|
T Consensus 157 ~~~~~~~~~~l~~~~~Dlivla~y~~il~~~~l~~~~~~~iNiHpSlLP~~rG~~p~~~Ai~~G~~~~G~Tvh~v~~~lD 236 (292)
T 3lou_A 157 AQQEAQWLDVFETSGAELVILARYMQVLSPEASARLANRAINIHHSFLPGFKGAKPYHQAHARGVKLIGATAHFVTDDLD 236 (292)
T ss_dssp HHHHHHHHHHHHHHTCSEEEESSCCSCCCHHHHHHTTTSEEEEEEECSSCCCSSCHHHHHHHHTCSEEEEEEEECCSSTT
T ss_pred HHHHHHHHHHHHHhCCCEEEecCchhhCCHHHHhhhcCCeEEeCCCcCcCCCCccHHHHHHHcCCCeEEEEEEEEcCCCc
Confidence 2457888887 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCceeeecCCceeeC
Q 020508 270 AGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF 325 (325)
Q Consensus 270 ~G~Ii~Q~~~~I~~~dt~~~l~~r~~~~~~~ll~~al~~i~~g~~~~~~~~~~~~~ 325 (325)
+||||.|+.++|.++||.++|.+|+.++++++++++++++++|++..++ +|||||
T Consensus 237 ~G~Ii~Q~~v~i~~~dt~~~L~~r~~~~e~~~l~~av~~~~~~~~~~~~-~~~~vf 291 (292)
T 3lou_A 237 EGPIIEQVVERVDHSYRPEQLLAVGRDVECITLARAVKAFIERRVFLNG-DRTVVF 291 (292)
T ss_dssp CSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEET-TEEEEC
T ss_pred CCCEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCEEEcC-CEEEEe
Confidence 9999999999999999999999999999999999999999999999885 999998
No 4
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=100.00 E-value=4.3e-71 Score=518.76 Aligned_cols=277 Identities=39% Similarity=0.627 Sum_probs=257.7
Q ss_pred ceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcccceee
Q 020508 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVV 120 (325)
Q Consensus 41 ~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~~~~ 120 (325)
.++++|++|+||||||++||++|+++|+||++++|+.+.++|.|+|++++++|+...+.++|+++|+++|++++++ |
T Consensus 5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~L~~~f~~la~~~~m~---~ 81 (288)
T 3obi_A 5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGVIAAKFTMG---W 81 (288)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSCCCCHHHHHHHHHHHHHHTTCE---E
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCCCCCHHHHHHHHHHHHHHcCCE---E
Confidence 4699999999999999999999999999999999997788999999999999984478999999999999999998 7
Q ss_pred eecCCCCCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecC-CCCh--hHHH
Q 020508 121 RVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA-KENE--REEE 197 (325)
Q Consensus 121 ~~~~~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~-~~~~--~~~~ 197 (325)
++.+.++|+||+||+||+||||++|++++++|+++++|++|+||++ ..+.++|+++|||+++++. ..+. .+++
T Consensus 82 ~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~Visn~p----~~~~~~A~~~gIp~~~~~~~~~~r~~~~~~ 157 (288)
T 3obi_A 82 HMRDRETRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVSNHP----RETFSGFDFGDIPFYHFPVNKDTRRQQEAA 157 (288)
T ss_dssp EEEETTSCEEEEEEECSCCHHHHHHHHHHHTTSSCEEEEEEEESSC----GGGSCCTTTTTCCEEECCCCTTTHHHHHHH
T ss_pred EeeccCCCcEEEEEEcCCCCCHHHHHHHHHCCCCCeEEEEEEcCCC----hhHHHHHHHcCCCEEEeCCCcccHHHHHHH
Confidence 7777778999999999999999999999999999999999999982 1356789999999998873 2222 2457
Q ss_pred HHHHhc--CCCEEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhCCcEeEEEEEEecCCCCCCCeEE
Q 020508 198 LLELVQ--NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIE 275 (325)
Q Consensus 198 ~~~~l~--~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvh~v~~~~D~G~Ii~ 275 (325)
+.+.|+ ++|++|++|||+|||+++++.|++++||+||||||+|||++|++||+.+|++.+|+|+|+|++++|+||||.
T Consensus 158 ~~~~l~~~~~Dlivlagy~~il~~~~l~~~~~~~iNiHpSlLP~~rG~~p~~~A~~~G~~~~G~Tvh~v~~~~D~GpIi~ 237 (288)
T 3obi_A 158 ITALIAQTHTDLVVLARYMQILSDEMSARLAGRCINIHHSFLPGFKGAKPYHQAFDRGVKLIGATAHYVTSALDEGPIID 237 (288)
T ss_dssp HHHHHHHHTCCEEEESSCCSCCCHHHHHHTTTSEEEEEEECSSCCCSSCHHHHHHHHTCSEEEEEEEECCSSTTCSCEEE
T ss_pred HHHHHHhcCCCEEEhhhhhhhCCHHHHhhhcCCeEEeCcccccCCCCchHHHHHHHcCCCEEEEEEEEECCCCcCCCeEE
Confidence 888887 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCceeeecCCceeeC
Q 020508 276 QMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF 325 (325)
Q Consensus 276 Q~~~~I~~~dt~~~l~~r~~~~~~~ll~~al~~i~~g~~~~~~~~~~~~~ 325 (325)
|+.++|.++||.++|.+|+.++++++++++++++++|++..++ +|||||
T Consensus 238 Q~~v~i~~~dt~~~L~~r~~~~e~~~l~~av~~~~~~~~~~~~-~~~~vf 286 (288)
T 3obi_A 238 QDVERISHRDTPADLVRKGRDIERRVLSRALHYHLDDRVILNG-RKTVVF 286 (288)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEET-TEEEEC
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCEEEcC-CEEEEc
Confidence 9999999999999999999999999999999999999999885 999998
No 5
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=100.00 E-value=4.9e-71 Score=518.14 Aligned_cols=276 Identities=38% Similarity=0.608 Sum_probs=254.9
Q ss_pred cceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhccccee
Q 020508 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSV 119 (325)
Q Consensus 40 ~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~~~ 119 (325)
..++++|++|+||||||++||++|+++|+||++++|+.+.++|.|+|+++++.|. .+.++|+++|++++++++++
T Consensus 5 ~~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~--~~~~~L~~~f~~la~~~~m~--- 79 (287)
T 3nrb_A 5 NNQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIPV--AGVNDFNSAFGKVVEKYNAE--- 79 (287)
T ss_dssp TTEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCC-----CHHHHHHHHHHGGGTCE---
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcCC--CCHHHHHHHHHHHHHHcCCe---
Confidence 4579999999999999999999999999999999999778899999999999976 35679999999999999998
Q ss_pred eeecCCCCCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecC-CCCh--hHH
Q 020508 120 VRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA-KENE--REE 196 (325)
Q Consensus 120 ~~~~~~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~-~~~~--~~~ 196 (325)
|++.+.++|+||+||+||+||||++|++++++|+++++|++|+||+++ + +.++|+++|||+++++. ..+. .++
T Consensus 80 ~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~Visn~~~---a-~~~~A~~~gIp~~~~~~~~~~r~~~~~ 155 (287)
T 3nrb_A 80 WWFRPRTDRKKVVIMVSKFDHCLGDLLYRHRLGELDMEVVGIISNHPR---E-ALSVSLVGDIPFHYLPVTPATKAAQES 155 (287)
T ss_dssp EEEEETTCCCEEEEEECSCCHHHHHHHHHHHHTSSCCEEEEEEESSCG---G-GCCCCCCTTSCEEECCCCGGGHHHHHH
T ss_pred eEeeccCCCcEEEEEEeCCCcCHHHHHHHHHCCCCCeEEEEEEeCChH---H-HHHHHHHcCCCEEEEeccCcchhhHHH
Confidence 777777789999999999999999999999999999999999999863 2 67889999999998873 2111 245
Q ss_pred HHHHHhc--CCCEEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhCCcEeEEEEEEecCCCCCCCeE
Q 020508 197 ELLELVQ--NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPII 274 (325)
Q Consensus 197 ~~~~~l~--~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvh~v~~~~D~G~Ii 274 (325)
++.+.|+ ++|++|++|||+|||+++++.|++++||+||||||+|||++|++||+.+|++.+|+|+|+|++++|+||||
T Consensus 156 ~~~~~l~~~~~Dlivlagym~il~~~~l~~~~~~~iNiHpSlLP~~rG~~p~~~Ai~~G~k~tG~Tvh~v~~~lD~GpIi 235 (287)
T 3nrb_A 156 QIKNIVTQSQADLIVLARYMQILSDDLSAFLSGRCINIHHSFLPGFKGAKPYHQAHTRGVKLIGATAHFVTADLDEGPII 235 (287)
T ss_dssp HHHHHHHHHTCSEEEESSCCSCCCHHHHHHHTTSEEEEESSCTTTTCSSCHHHHHHHHTCSEEEEEEEECCSSSSCCCEE
T ss_pred HHHHHHHHhCCCEEEhhhhhhhcCHHHHhhccCCeEEECcccccCCCCchHHHHHHHcCCCeEEEEEEEECCCCcCCCEE
Confidence 7888887 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCceeeecCCceeeC
Q 020508 275 EQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF 325 (325)
Q Consensus 275 ~Q~~~~I~~~dt~~~l~~r~~~~~~~ll~~al~~i~~g~~~~~~~~~~~~~ 325 (325)
.|+.++|.++||.++|.+|+.++++++++++++++++|++...+ +|||||
T Consensus 236 ~Q~~v~i~~~dt~~~L~~r~~~~e~~~l~~av~~~~~~~~~~~~-~~~~vf 285 (287)
T 3nrb_A 236 AQDVEHVSHRDSAEDLVRKGRDIERRVLSRAVLLFLEDRLIVNG-ERTVVF 285 (287)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEET-TEEEEC
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCEEEcC-CEEEEc
Confidence 99999999999999999999999999999999999999999885 999998
No 6
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=100.00 E-value=7.4e-51 Score=366.38 Aligned_cols=196 Identities=31% Similarity=0.487 Sum_probs=179.1
Q ss_pred CCCCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhc-
Q 020508 125 IDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ- 203 (325)
Q Consensus 125 ~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~- 203 (325)
+.+|+||+||+||+|+|+++|++++++++++++|++|+||++ ++...++|+++|||++.++.+ +.+++++.+.|+
T Consensus 5 ~~~~~ri~vl~SG~gsnl~all~~~~~~~~~~~I~~Vis~~~---~a~~l~~A~~~gIp~~~~~~~-~~~~~~~~~~L~~ 80 (215)
T 3kcq_A 5 MKKELRVGVLISGRGSNLEALAKAFSTEESSVVISCVISNNA---EARGLLIAQSYGIPTFVVKRK-PLDIEHISTVLRE 80 (215)
T ss_dssp --CCEEEEEEESSCCHHHHHHHHHTCCC-CSEEEEEEEESCT---TCTHHHHHHHTTCCEEECCBT-TBCHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCcHHHHHHHHHHHcCCCCcEEEEEEeCCc---chHHHHHHHHcCCCEEEeCcc-cCChHHHHHHHHH
Confidence 346789999999999999999999999988999999999975 345789999999999987622 123467888887
Q ss_pred -CCCEEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhCCcEeEEEEEEecCCCCCCCeEEEEEEeCC
Q 020508 204 -NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVS 282 (325)
Q Consensus 204 -~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvh~v~~~~D~G~Ii~Q~~~~I~ 282 (325)
++|++|+++||+|||+++++.|++++||+|||+||+|||++|++||+.+|++++|+|+|+|++++|+||||+|+.++|.
T Consensus 81 ~~~Dlivlagy~~IL~~~~l~~~~~~~iNiHpSLLP~yrG~~pi~~Ai~~G~~~tGvTvh~v~~~lD~G~Ii~Q~~v~I~ 160 (215)
T 3kcq_A 81 HDVDLVCLAGFMSILPEKFVTDWHHKIINIHPSLLPSFKGLNAQEQAYKAGVKIAGCTLHYVYQELDAGPIIMQAAVPVL 160 (215)
T ss_dssp TTCSEEEESSCCSCCCHHHHHHTTTSEEEEESSCTTTTCSSCHHHHHHHHTCSEEEEEEEECCSSTTCSCEEEEEEEECC
T ss_pred hCCCEEEEeCCceEeCHHHHhhccCCeEEECcccccCCCCccHHHHHHHcCCCeEEEEEEEEcCCCCCCCEEEEEEeecC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhCceeeecCCceee
Q 020508 283 HRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVV 324 (325)
Q Consensus 283 ~~dt~~~l~~r~~~~~~~ll~~al~~i~~g~~~~~~~~~~~~ 324 (325)
++||.++|++|+.+.++++++++++++.+|++.+++++||++
T Consensus 161 ~~dt~~~L~~rl~~~e~~ll~~~l~~~~~g~~~~~~~~~~~~ 202 (215)
T 3kcq_A 161 REDTAESLASRILAAEHVCYPKGVKLIAQDKIKLCDDGTVQC 202 (215)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECTTSCEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEccCCEEEE
Confidence 999999999999999999999999999999999955688875
No 7
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=100.00 E-value=2.4e-50 Score=363.07 Aligned_cols=193 Identities=27% Similarity=0.419 Sum_probs=177.3
Q ss_pred CCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEec-CCCCh---hHHHHHHHh
Q 020508 127 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKENE---REEELLELV 202 (325)
Q Consensus 127 ~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~-~~~~~---~~~~~~~~l 202 (325)
+|+||+||+||+||||++|+++++++ ++++|++|+||++ ++...++|+++|||++.++ +.... .++++.+.|
T Consensus 4 ~~~riavl~SG~Gsnl~all~~~~~~-~~~eI~~Vis~~~---~a~~~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l 79 (215)
T 3tqr_A 4 EPLPIVVLISGNGTNLQAIIGAIQKG-LAIEIRAVISNRA---DAYGLKRAQQADIPTHIIPHEEFPSRTDFESTLQKTI 79 (215)
T ss_dssp CCEEEEEEESSCCHHHHHHHHHHHTT-CSEEEEEEEESCT---TCHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHH
T ss_pred CCcEEEEEEeCCcHHHHHHHHHHHcC-CCCEEEEEEeCCc---chHHHHHHHHcCCCEEEeCccccCchhHhHHHHHHHH
Confidence 57899999999999999999999988 8999999999985 4567899999999999876 32222 256788888
Q ss_pred c--CCCEEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhCCcEeEEEEEEecCCCCCCCeEEEEEEe
Q 020508 203 Q--NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVER 280 (325)
Q Consensus 203 ~--~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvh~v~~~~D~G~Ii~Q~~~~ 280 (325)
+ ++|++|+++||+|||+++++.|++++||+|||+||+|||++|++||+.+|++++|+|+|+|++++|+||||.|+.++
T Consensus 80 ~~~~~Dliv~agy~~il~~~~l~~~~~~~iNiHpSLLP~yrG~~pi~~Ai~~G~~~tGvTvh~v~~~~D~G~Ii~Q~~v~ 159 (215)
T 3tqr_A 80 DHYDPKLIVLAGFMRKLGKAFVSHYSGRMINIHPSLLPKYTGLNTHERALAAGETEHGVSVHYVTEDLDAGPLICQARLS 159 (215)
T ss_dssp HTTCCSEEEESSCCSCCCHHHHHHTTTSEEEEESSSTTTTCSSCHHHHHHHTTCSEEEEEEEECC-CTTCSCEEEEEEEE
T ss_pred HhcCCCEEEEccchhhCCHHHHhhccCCeEEeCcccCCCCCChhHHHHHHHcCCCeEEEEEEEEcCCCCCCCEEEEEEEe
Confidence 7 89999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCceeeecCCceee
Q 020508 281 VSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVV 324 (325)
Q Consensus 281 I~~~dt~~~l~~r~~~~~~~ll~~al~~i~~g~~~~~~~~~~~~ 324 (325)
|.++||.++|++|+.+.++++++++++++.+|++.+.+ +|+++
T Consensus 160 I~~~dt~~~L~~rl~~~~~~ll~~~l~~~~~g~~~~~~-~~~~~ 202 (215)
T 3tqr_A 160 ITPQDTPETLKTRVHALEHIIYPEVLSWFAAGRLNYHN-NQVFL 202 (215)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEET-TEEEE
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEecC-CEEEE
Confidence 99999999999999999999999999999999999874 77654
No 8
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=100.00 E-value=8.1e-50 Score=359.49 Aligned_cols=193 Identities=27% Similarity=0.399 Sum_probs=179.1
Q ss_pred ceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEec-CCCCh---hHHHHHHHhc-
Q 020508 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKENE---REEELLELVQ- 203 (325)
Q Consensus 129 ~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~-~~~~~---~~~~~~~~l~- 203 (325)
+||+||+||+|+||++|++++++++++++|++|+|+++ ++.++++|+++|||++.++ ...+. .++++.+.|+
T Consensus 1 ~ri~vl~Sg~gsnl~ali~~~~~~~~~~~i~~Vis~~~---~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~ 77 (212)
T 1jkx_A 1 MNIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKA---DAFGLERARQAGIATHTLIASAFDSREAYDRELIHEIDM 77 (212)
T ss_dssp CEEEEEESSCCHHHHHHHHHHHTTSSSSEEEEEEESCT---TCHHHHHHHHTTCEEEECCGGGCSSHHHHHHHHHHHHGG
T ss_pred CEEEEEEECCcHHHHHHHHHHHcCCCCceEEEEEeCCC---chHHHHHHHHcCCcEEEeCcccccchhhccHHHHHHHHh
Confidence 48999999999999999999999988999999999985 4578999999999999875 22222 2467888887
Q ss_pred -CCCEEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhCCcEeEEEEEEecCCCCCCCeEEEEEEeCC
Q 020508 204 -NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVS 282 (325)
Q Consensus 204 -~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvh~v~~~~D~G~Ii~Q~~~~I~ 282 (325)
++|++|++|||+|||+++++.|++++||+|||+||+|||++|++|||++|++++|+|+|+|++++|+||||+|+.++|.
T Consensus 78 ~~~Dliv~agy~~il~~~~l~~~~~~~iNiHpSlLP~yrG~~pi~~ai~~G~~~tGvTvh~v~~~~D~G~Ii~Q~~v~I~ 157 (212)
T 1jkx_A 78 YAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVF 157 (212)
T ss_dssp GCCSEEEESSCCSCCCHHHHHHTTTSEEEEESSCTTSCCSSCHHHHHHHTTCSEEEEEEEECCSSTTCSCEEEEEEEECC
T ss_pred cCCCEEEEeChhhhCCHHHHhhccCCEEEEccCcccCCCCccHHHHHHHcCCCceEEEEEEEcccccCCCEEEEEEEEcC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhCceeeecCCceeeC
Q 020508 283 HRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF 325 (325)
Q Consensus 283 ~~dt~~~l~~r~~~~~~~ll~~al~~i~~g~~~~~~~~~~~~~ 325 (325)
++||.++|++|+.+.++++++++++.+.+|++.+.+ +|++++
T Consensus 158 ~~dt~~~L~~rl~~~~~~ll~~~l~~~~~g~~~~~~-~~~~~~ 199 (212)
T 1jkx_A 158 AGDSEDDITARVQTQEHAIYPLVISWFADGRLKMHE-NAAWLD 199 (212)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEET-TEEEET
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCceEeC-CEEEEc
Confidence 999999999999999999999999999999999884 898874
No 9
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=100.00 E-value=5.8e-50 Score=359.12 Aligned_cols=193 Identities=27% Similarity=0.430 Sum_probs=170.1
Q ss_pred CCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEec-CCCChh---HHHHHHHh
Q 020508 127 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKENER---EEELLELV 202 (325)
Q Consensus 127 ~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~-~~~~~~---~~~~~~~l 202 (325)
.|+||+||+||+|+|+++|++++++++++++|++|+||++ ++...++|+++|||++.++ +..+.+ ++++.+.|
T Consensus 6 ~~~ri~vl~SG~gsnl~all~~~~~~~l~~~I~~Visn~~---~a~~l~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l 82 (209)
T 4ds3_A 6 KRNRVVIFISGGGSNMEALIRAAQAPGFPAEIVAVFSDKA---EAGGLAKAEAAGIATQVFKRKDFASKEAHEDAILAAL 82 (209)
T ss_dssp CCEEEEEEESSCCHHHHHHHHHHTSTTCSEEEEEEEESCT---TCTHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHH
T ss_pred CCccEEEEEECCcHHHHHHHHHHHcCCCCcEEEEEEECCc---ccHHHHHHHHcCCCEEEeCccccCCHHHHHHHHHHHH
Confidence 3679999999999999999999999988999999999975 3466899999999999876 222222 46788888
Q ss_pred c--CCCEEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhCCcEeEEEEEEecCCCCCCCeEEEEEEe
Q 020508 203 Q--NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVER 280 (325)
Q Consensus 203 ~--~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvh~v~~~~D~G~Ii~Q~~~~ 280 (325)
+ ++|++|+++||+|||+++++.|++++||+|||+||+|||++|++|||.+|++++|+|+|+|++++|+||||.|+.++
T Consensus 83 ~~~~~Dliv~agy~~il~~~~l~~~~~~~iNiHpSLLP~yrG~~pi~~Ai~~G~~~tGvTvh~v~~~~D~G~Ii~Q~~v~ 162 (209)
T 4ds3_A 83 DVLKPDIICLAGYMRLLSGRFIAPYEGRILNIHPSLLPLFPGLHTHQRALDAGMKLAGCTVHLVTEGMDEGPILAQAAVP 162 (209)
T ss_dssp HHHCCSEEEESSCCSCCCHHHHGGGTTCEEEEESSCTTSSCSSCHHHHHHHTTCSEEEEEEEECCC--CCCCEEEEEEEE
T ss_pred HhcCCCEEEEeccccCcCHHHHhhccCCeEEECCccccCCCChhHHHHHHHcCCCeEEEEEEEEcCCCCCCCeEEEEEEe
Confidence 7 89999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCce---eeecCCcee
Q 020508 281 VSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRV---LPYEMNKTV 323 (325)
Q Consensus 281 I~~~dt~~~l~~r~~~~~~~ll~~al~~i~~g~~---~~~~~~~~~ 323 (325)
|.++||.++|++|+.+.++++++++++++.+|++ ... ++||.
T Consensus 163 I~~~dt~~~L~~r~~~~~~~ll~~~l~~~~~g~~~~~~~~-~~~~~ 207 (209)
T 4ds3_A 163 VLDGDTAETLAARVLKAEHRLYPLALQKFAAGEKASNQFS-DGMVL 207 (209)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCC
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeeee-CCEec
Confidence 9999999999999999999999999999999999 666 47763
No 10
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=100.00 E-value=8.8e-50 Score=358.44 Aligned_cols=193 Identities=32% Similarity=0.438 Sum_probs=175.9
Q ss_pred ceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEec-CCCChh---HHHHHHHhc-
Q 020508 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKENER---EEELLELVQ- 203 (325)
Q Consensus 129 ~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~-~~~~~~---~~~~~~~l~- 203 (325)
+|||||+||+|+||++|++++++++++++|++|+|++++ +..+++|+++|||++.++ +..+.+ ++++.+.|+
T Consensus 1 ~riaVl~SG~Gs~L~aLi~~~~~~~~~~~I~~Vvs~~~~---~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~ 77 (209)
T 1meo_A 1 ARVAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAA---VAGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEE 77 (209)
T ss_dssp CEEEEEESSSCTTHHHHHHHHHSTTCSCEEEEEEESSTT---CHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHH
T ss_pred CeEEEEEECCchHHHHHHHHHhcCCCCcEEEEEEeCCCC---hHHHHHHHHcCCCEEEECccccCchhhhhHHHHHHHHh
Confidence 489999999999999999999999888999999999863 567899999999998776 323222 357778886
Q ss_pred -CCCEEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhCCcEeEEEEEEecCCCCCCCeEEEEEEeCC
Q 020508 204 -NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVS 282 (325)
Q Consensus 204 -~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvh~v~~~~D~G~Ii~Q~~~~I~ 282 (325)
++|++|+++||+|||+++++.|++++||+|||+||+|||++|++|||++|++++|+|+|+|++++|+||||+|+.++|.
T Consensus 78 ~~~Dliv~a~y~~il~~~~l~~~~~~~iNiHpSLLP~yrG~~pi~~Ai~~G~~~tGvTvh~v~~~~D~G~Ii~Q~~v~I~ 157 (209)
T 1meo_A 78 FSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEDVDAGQIILQEAVPVK 157 (209)
T ss_dssp TTCCEEEEESCCSCCCHHHHHHTTTSEEEEESSSTTSSCSSCHHHHHHHHTCSEEEEEEEECCC---CCCEEEEEEEECC
T ss_pred cCCCEEEEcchhhhCCHHHHhhhcCCEEEEccCcCcCCCCccHHHHHHHcCCCcEEEEEEEECCCCcCCCEEEEEEEecC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhCceeeecCCceee
Q 020508 283 HRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVV 324 (325)
Q Consensus 283 ~~dt~~~l~~r~~~~~~~ll~~al~~i~~g~~~~~~~~~~~~ 324 (325)
++||.++|++|+.+.++++++++++.+.+|++.+.++|||+.
T Consensus 158 ~~dt~~~L~~rl~~~~~~ll~~~l~~~~~g~~~~~~~~~~~~ 199 (209)
T 1meo_A 158 RGDTVATLSERVKLAEHKIFPAALQLVASGTVQLGENGKICW 199 (209)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHTSEEECTTSSEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCceEcCCCeEEE
Confidence 999999999999999999999999999999999999899874
No 11
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=100.00 E-value=1.1e-49 Score=358.71 Aligned_cols=193 Identities=24% Similarity=0.340 Sum_probs=175.6
Q ss_pred CCCCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEec-CCCCh---hHHHHHH
Q 020508 125 IDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKENE---REEELLE 200 (325)
Q Consensus 125 ~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~-~~~~~---~~~~~~~ 200 (325)
+..++||+||+||+|+||++|+++++. .++++|++|+||++ ++++++|+++|||++..+ +.+.. .++++.+
T Consensus 9 ~~~~~ri~vl~SG~gsnl~all~~~~~-~~~~eI~~Vis~~~----a~~~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~ 83 (215)
T 3da8_A 9 PSAPARLVVLASGTGSLLRSLLDAAVG-DYPARVVAVGVDRE----CRAAEIAAEASVPVFTVRLADHPSRDAWDVAITA 83 (215)
T ss_dssp CCSSEEEEEEESSCCHHHHHHHHHSST-TCSEEEEEEEESSC----CHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHH
T ss_pred CCCCcEEEEEEeCChHHHHHHHHHHhc-cCCCeEEEEEeCCc----hHHHHHHHHcCCCEEEeCcccccchhhhhHHHHH
Confidence 356789999999999999999999865 67789999999984 578999999999999775 22222 2467888
Q ss_pred Hhc--CCCEEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhCCcEeEEEEEEecCCCCCCCeEEEEE
Q 020508 201 LVQ--NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMV 278 (325)
Q Consensus 201 ~l~--~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvh~v~~~~D~G~Ii~Q~~ 278 (325)
.|+ ++|++|+++||+|||+++++.|++++||+||||||+|||++|++||+++|++++|+|+|+|++++|+||||+|+.
T Consensus 84 ~l~~~~~Dlivlagy~~iL~~~~l~~~~~~~iNiHpSLLP~yrG~~pi~~Ai~~G~~~tGvTvh~v~~~lD~G~Ii~Q~~ 163 (215)
T 3da8_A 84 ATAAHEPDLVVSAGFMRILGPQFLSRFYGRTLNTHPALLPAFPGTHGVADALAYGVKVTGATVHLVDAGTDTGPILAQQP 163 (215)
T ss_dssp HHHTTCCSEEEEEECCSCCCHHHHHHHTTTEEEEESSCTTSSCSTTHHHHHHHHTCSEEEEEEEECCSSSSCSCEEEEEE
T ss_pred HHHhhCCCEEEEcCchhhCCHHHHhhccCCeEEeCcccccCCCCchHHHHHHHcCCCeEEEEEEEEcCCCCCCCEEEEEE
Confidence 887 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCceeeecCCcee
Q 020508 279 ERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTV 323 (325)
Q Consensus 279 ~~I~~~dt~~~l~~r~~~~~~~ll~~al~~i~~g~~~~~~~~~~~ 323 (325)
++|.++||.++|++|+.++++++++++++++.+|++.+.+ +|++
T Consensus 164 v~I~~~dt~~~L~~rl~~~~~~ll~~~l~~~~~g~~~~~~-~~~~ 207 (215)
T 3da8_A 164 VPVLDGDDEETLHERIKVTERRLLVAAVAALATHGVTVVG-RTAT 207 (215)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEET-TEEE
T ss_pred eecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEeC-CEEE
Confidence 9999999999999999999999999999999999999863 5554
No 12
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=100.00 E-value=8.8e-50 Score=358.05 Aligned_cols=187 Identities=30% Similarity=0.483 Sum_probs=173.5
Q ss_pred CceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEec-CCCChh---HHHHHHHhc
Q 020508 128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKENER---EEELLELVQ 203 (325)
Q Consensus 128 ~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~-~~~~~~---~~~~~~~l~ 203 (325)
++||+||+||+||||++|++++++|+++++|++|+||++ +++++++|+++|||++.++ ...+.+ ++++.+.|+
T Consensus 2 m~riavl~Sg~Gsnl~ali~~~~~~~l~~eI~~Visn~~---~a~v~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~ 78 (211)
T 3p9x_A 2 MKRVAIFASGSGTNAEAIIQSQKAGQLPCEVALLITDKP---GAKVVERVKVHEIPVCALDPKTYPSKEAYEIEVVQQLK 78 (211)
T ss_dssp -CEEEEECCTTCHHHHHHHHHHHTTCCSSEEEEEEESCS---SSHHHHHHHTTTCCEEECCGGGSSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEeCCchHHHHHHHHHHcCCCCcEEEEEEECCC---CcHHHHHHHHcCCCEEEeChhhcCchhhhHHHHHHHHH
Confidence 479999999999999999999999999999999999874 5789999999999998776 333222 467888887
Q ss_pred --CCCEEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhCCcEeEEEEEEecCCCCCCCeEEEEEEeC
Q 020508 204 --NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERV 281 (325)
Q Consensus 204 --~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvh~v~~~~D~G~Ii~Q~~~~I 281 (325)
++|++|++|||+|||+++++.|++++||+|||+||+|||++|++|||++|++++|+|+|+|++++|+||||+|+.++|
T Consensus 79 ~~~~Dliv~agy~~Il~~~~l~~~~~~~iNiHpSLLP~yrG~~pi~~Ai~~G~~~tGvTvh~v~~~~D~G~Ii~Q~~v~I 158 (211)
T 3p9x_A 79 EKQIDFVVLAGYMRLVGPTLLGAYEGRIVNIHPSLLPAFPGLHAIEQAIRANVKVTGVTIHYVDEGMDTGPIIAQEAVSI 158 (211)
T ss_dssp HTTCCEEEESSCCSCCCHHHHHHHTTSEEEEESSCTTSSCSSCHHHHHHHTTCSEEEEEEEECCSSSSCSCEEEEEEEEC
T ss_pred hcCCCEEEEeCchhhcCHHHHhhccCCeEEECCccCCCCCCccHHHHHHHcCCCeEEEEEEEEcCCCCCCCEEEEEEEec
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCceeee
Q 020508 282 SHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPY 317 (325)
Q Consensus 282 ~~~dt~~~l~~r~~~~~~~ll~~al~~i~~g~~~~~ 317 (325)
.++||.++|++|+.+.++++++++++.+.+|+...+
T Consensus 159 ~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g~~~~~ 194 (211)
T 3p9x_A 159 EEEDTLETLTTKIQAVEHRLYPATLHKLLSKAENLY 194 (211)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHHHTCTTTCCS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcchh
Confidence 999999999999999999999999999999987643
No 13
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=100.00 E-value=3.3e-49 Score=359.24 Aligned_cols=200 Identities=29% Similarity=0.451 Sum_probs=182.8
Q ss_pred ecCCCCCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEec-CCCChh---HHH
Q 020508 122 VPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKENER---EEE 197 (325)
Q Consensus 122 ~~~~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~-~~~~~~---~~~ 197 (325)
++...+++||+||+||+|++++.+++++.++.++++|++|+|+++ +++++++|+++|||++.++ .+.+.+ +++
T Consensus 16 ~~~~~~~~rI~~l~SG~g~~~~~~l~~l~~~~~~~~I~~Vvt~~~---~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~ 92 (229)
T 3auf_A 16 LYFQGHMIRIGVLISGSGTNLQAILDGCREGRIPGRVAVVISDRA---DAYGLERARRAGVDALHMDPAAYPSRTAFDAA 92 (229)
T ss_dssp SSCBTTCEEEEEEESSCCHHHHHHHHHHHTTSSSEEEEEEEESST---TCHHHHHHHHTTCEEEECCGGGSSSHHHHHHH
T ss_pred ccccCCCcEEEEEEeCCcHHHHHHHHHHHhCCCCCeEEEEEcCCC---chHHHHHHHHcCCCEEEECcccccchhhccHH
Confidence 444556789999999999999999999988877899999999975 4678999999999998766 322222 467
Q ss_pred HHHHhc--CCCEEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhCCcEeEEEEEEecCCCCCCCeEE
Q 020508 198 LLELVQ--NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIE 275 (325)
Q Consensus 198 ~~~~l~--~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvh~v~~~~D~G~Ii~ 275 (325)
+.+.|+ ++|++|+++||+|||+++++.|++++||+||||||+|||++|++|||++|++++|+|+|+|++++|+||||+
T Consensus 93 ~~~~l~~~~~Dliv~agy~~IL~~~~l~~~~~~~iNiHpSLLP~yrG~~pi~~Ai~~G~~~tGvTvh~v~~~~D~G~Ii~ 172 (229)
T 3auf_A 93 LAERLQAYGVDLVCLAGYMRLVRGPMLTAFPNRILNIHPSLLPAFPGLEAQRQALEHGVKVAGCTVHFVTAGVDEGPIIL 172 (229)
T ss_dssp HHHHHHHTTCSEEEESSCCSCCCHHHHHHSTTCEEEEESSCTTSSCSSCHHHHHHHHTCSEEEEEEEECCSSTTCSCEEE
T ss_pred HHHHHHhcCCCEEEEcChhHhCCHHHHhhccCCEEEEccCcCcCCCCcCHHHHHHHcCCCeEEEEEEEECCCCcCCCEEE
Confidence 888887 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCceeeecCCceeeC
Q 020508 276 QMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF 325 (325)
Q Consensus 276 Q~~~~I~~~dt~~~l~~r~~~~~~~ll~~al~~i~~g~~~~~~~~~~~~~ 325 (325)
|+.++|.++||.++|++|+.+.++++++++++.+.+|++.+.+ +|+++|
T Consensus 173 Q~~v~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g~~~~~~-~~~~~~ 221 (229)
T 3auf_A 173 QAAVPVLEGDTVEDLRRRILAEEHRIYPEAIRLFAEGRLVIEG-RRVRIL 221 (229)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEET-TEEEEC
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEeC-CEEEEc
Confidence 9999999999999999999999999999999999999999974 999885
No 14
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=100.00 E-value=3.5e-48 Score=349.92 Aligned_cols=194 Identities=30% Similarity=0.463 Sum_probs=177.7
Q ss_pred CceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEec-CCCChh---HHHHHHHhc
Q 020508 128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKENER---EEELLELVQ 203 (325)
Q Consensus 128 ~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~-~~~~~~---~~~~~~~l~ 203 (325)
++||+||+||+|++++.+++++.++.++++|++|+|+++ ++.++++|+++|||++.++ ...+.+ ++++.+.|+
T Consensus 1 m~rI~vl~SG~g~~~~~~l~~l~~~~~~~~i~~Vvs~~~---~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~ 77 (216)
T 2ywr_A 1 MLKIGVLVSGRGSNLQAIIDAIESGKVNASIELVISDNP---KAYAIERCKKHNVECKVIQRKEFPSKKEFEERMALELK 77 (216)
T ss_dssp CEEEEEEECSCCHHHHHHHHHHHTTSSCEEEEEEEESCT---TCHHHHHHHHHTCCEEECCGGGSSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEeCCcHHHHHHHHHHHhCCCCCeEEEEEeCCC---ChHHHHHHHHcCCCEEEeCcccccchhhhhHHHHHHHH
Confidence 369999999999999999999888776779999999985 4578999999999999766 222221 467888887
Q ss_pred --CCCEEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhCCcEeEEEEEEecCCCCCCCeEEEEEEeC
Q 020508 204 --NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERV 281 (325)
Q Consensus 204 --~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvh~v~~~~D~G~Ii~Q~~~~I 281 (325)
++|++|++|||+|||+++++.|++++||+|||+||+|||++|++|||++|++++|+|+|+|++++|+||||.|+.++|
T Consensus 78 ~~~~Dliv~a~y~~il~~~~l~~~~~~~iNiHpSLLP~yrG~~pi~~ai~~G~~~tGvTvh~v~~~~D~G~Ii~q~~~~i 157 (216)
T 2ywr_A 78 KKGVELVVLAGFMRILSHNFLKYFPNKVINIHPSLIPAFQGLHAQKQAVEFGVKFSGCTVHIVDESVDAGPVIVQAVVPV 157 (216)
T ss_dssp HTTCCEEEESSCCSCCCHHHHTTSTTCEEEEESSCTTTTCSTTHHHHHHHHTCSEEEEEEEECCSSSSCSCEEEEEEEEC
T ss_pred hcCCCEEEEeCchhhCCHHHHhhccCCeEEEcCCcCcCCCCccHHHHHHHcCCCeEEEEEEEEcccCCCCCEEEEEEEEc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCceeeecCCceeeC
Q 020508 282 SHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF 325 (325)
Q Consensus 282 ~~~dt~~~l~~r~~~~~~~ll~~al~~i~~g~~~~~~~~~~~~~ 325 (325)
.++||.++|++|+.+.++++++++++.+.+|++.+.+ +|++++
T Consensus 158 ~~~dt~~~L~~rl~~~~~~ll~~~l~~~~~g~~~~~~-~~~~~~ 200 (216)
T 2ywr_A 158 LPEDDENTLADRILKWEHKILPQTVQWFAQDRIIIDG-RKVIVK 200 (216)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEET-TEEEET
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecC-CeeEEe
Confidence 9999999999999999999999999999999999884 888763
No 15
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=100.00 E-value=6.2e-48 Score=347.33 Aligned_cols=185 Identities=25% Similarity=0.467 Sum_probs=168.0
Q ss_pred CceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEec-CCCChh---HHHHHHHhc
Q 020508 128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKENER---EEELLELVQ 203 (325)
Q Consensus 128 ~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~-~~~~~~---~~~~~~~l~ 203 (325)
++||+||+||+|++++.+++++.++.++++|++|+|+++ +++++++|+++|||++.++ ...+.+ ++++.+.|+
T Consensus 3 m~ki~vl~sG~g~~~~~~l~~l~~~~l~~~I~~Vit~~~---~~~v~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~ 79 (212)
T 3av3_A 3 MKRLAVFASGSGTNFQAIVDAAKRGDLPARVALLVCDRP---GAKVIERAARENVPAFVFSPKDYPSKAAFESEILRELK 79 (212)
T ss_dssp CEEEEEECCSSCHHHHHHHHHHHTTCCCEEEEEEEESST---TCHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHH
T ss_pred CcEEEEEEECCcHHHHHHHHHHHhCCCCCeEEEEEeCCC---CcHHHHHHHHcCCCEEEeCcccccchhhhHHHHHHHHH
Confidence 579999999999999999999988888899999999975 4689999999999998766 222222 457888886
Q ss_pred --CCCEEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhCCcEeEEEEEEecCCCCCCCeEEEEEEeC
Q 020508 204 --NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERV 281 (325)
Q Consensus 204 --~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvh~v~~~~D~G~Ii~Q~~~~I 281 (325)
++|++|++|||+|||+++++.|++++||+||||||+|||++|++|||++|++++|+|+|+|++++|+||||+|+.++|
T Consensus 80 ~~~~Dliv~a~y~~il~~~~l~~~~~~~iNiHpSLLP~yrG~~pi~~Ai~~G~~~tGvTvh~v~~~~D~G~Ii~Q~~v~I 159 (212)
T 3av3_A 80 GRQIDWIALAGYMRLIGPTLLSAYEGKIVNIHPSLLPAFPGKDAIGQAYRAGVSETGVTVHYVDEGMDTGPVIAQRVVPI 159 (212)
T ss_dssp HTTCCEEEESSCCSCCCHHHHHHTTTCEEEEESSCTTSSCSTTHHHHHHHHTCSEEEEEEEECCSSSSCSCEEEEEEEEC
T ss_pred hcCCCEEEEchhhhhCCHHHHhhhcCCEEEEecCcCCCCCCcCHHHHHHHcCCCeEEEEEEEECCCCCCCCEEEEEEEec
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCcee
Q 020508 282 SHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVL 315 (325)
Q Consensus 282 ~~~dt~~~l~~r~~~~~~~ll~~al~~i~~g~~~ 315 (325)
.++||.++|++|+.+.++++++++++.+.+|++.
T Consensus 160 ~~~dt~~~L~~r~~~~~~~ll~~~l~~~~~g~~~ 193 (212)
T 3av3_A 160 VPGEPIEALEERIHQVEHELYPTVLRMLLGEKEQ 193 (212)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 9999999999999999999999999999977654
No 16
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=100.00 E-value=3.7e-43 Score=333.36 Aligned_cols=183 Identities=23% Similarity=0.309 Sum_probs=165.5
Q ss_pred CCceEEEEEeCC--chHHHHHHHHhhcCCCCceEEEEEeCCCCCC-------CchHHHHHHHCCCCEEEecCCCChhHHH
Q 020508 127 PKYKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGP-------NSHVIRFLERHGIPYHYLCAKENEREEE 197 (325)
Q Consensus 127 ~~~ri~v~~Sg~--g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~-------~~~~~~~a~~~gIp~~~~~~~~~~~~~~ 197 (325)
+++||+||+|+. ..||++|++. +++|++|+|+++++. .++++++|+++|||++. +.+ .++++
T Consensus 2 ~~mrIvf~Gt~~fa~~~L~~L~~~------~~~i~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~~-~~~--~~~~~ 72 (314)
T 1fmt_A 2 ESLRIIFAGTPDFAARHLDALLSS------GHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQ-PVS--LRPQE 72 (314)
T ss_dssp CCCEEEEEECSHHHHHHHHHHHHT------TCEEEEEECCCCBC------CBCCHHHHHHHHTTCCEEC-CSC--SCSHH
T ss_pred CCCEEEEEecCHHHHHHHHHHHHC------CCcEEEEEeCCCCccccccccCcCHHHHHHHHcCCcEEe-cCC--CCCHH
Confidence 569999999997 6899999874 479999999987543 36899999999999974 322 23467
Q ss_pred HHHHhc--CCCEEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhCCcEeEEEEEEecCCCCCCCeEE
Q 020508 198 LLELVQ--NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIE 275 (325)
Q Consensus 198 ~~~~l~--~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvh~v~~~~D~G~Ii~ 275 (325)
+.+.|+ ++|++|+++|++|||+++++.+++++||+||||||+|||++|++|||++|++++|+|+|+|++++|+||||+
T Consensus 73 ~~~~l~~~~~Dliv~~~y~~ilp~~il~~~~~g~iNiHpSLLP~yRG~~pi~~Ai~~G~~~tGvTih~~~~~~D~G~Ii~ 152 (314)
T 1fmt_A 73 NQQLVAELQADVMVVVAYGLILPKAVLEMPRLGCINVHGSLLPRWRGAAPIQRSLWAGDAETGVTIMQMDVGLDTGDMLY 152 (314)
T ss_dssp HHHHHHHTTCSEEEEESCCSCCCHHHHHSSTTCEEEEESSSTTTTBSSCHHHHHHHHTCSEEEEEEEECCSSSSCSCEEE
T ss_pred HHHHHHhcCCCEEEEeeccccCCHHHHhhccCCEEEEcCCcCcCCCCcCHHHHHHHcCCCceEEEEEEEcccCcCCCEEE
Confidence 788876 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCceeeec
Q 020508 276 QMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYE 318 (325)
Q Consensus 276 Q~~~~I~~~dt~~~l~~r~~~~~~~ll~~al~~i~~g~~~~~~ 318 (325)
|+.++|.++||..+|++|+.+.+++++.++++.+.+|++.+.+
T Consensus 153 q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g~~~~~~ 195 (314)
T 1fmt_A 153 KLSCPITAEDTSGTLYDKLAELGPQGLITTLKQLADGTAKPEV 195 (314)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCBC
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCceec
Confidence 9999999999999999999999999999999999999887643
No 17
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Probab=100.00 E-value=4.7e-43 Score=331.49 Aligned_cols=181 Identities=21% Similarity=0.277 Sum_probs=163.2
Q ss_pred ceEEEEEeCC--chHHHHHHHHhhcCCCCceEEEEEeCCCCCC----CchHHHHHHHCCCCEEEecCCCChhHHHHHHHh
Q 020508 129 YKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGP----NSHVIRFLERHGIPYHYLCAKENEREEELLELV 202 (325)
Q Consensus 129 ~ri~v~~Sg~--g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~----~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l 202 (325)
+||+||+|+. ++||++|+++ +++|++|+|+++++. .++++++|+++|||++..++ .+++++.+.|
T Consensus 1 mrivf~gt~~fa~~~L~~L~~~------~~~i~~Vvt~~d~~~g~~~~~~v~~~A~~~gIpv~~~~~---~~~~~~~~~l 71 (305)
T 2bln_A 1 MKTVVFAYHDMGCLGIEALLAA------GYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDN---VNHPLWVERI 71 (305)
T ss_dssp CEEEEEECHHHHHHHHHHHHHT------TCEEEEEECCCC------CCCCHHHHHHHHTCCEECCSC---CCSHHHHHHH
T ss_pred CEEEEEEcCHHHHHHHHHHHHC------CCcEEEEEcCCCCCCCCcCccHHHHHHHHcCCCEECCCc---CCcHHHHHHH
Confidence 5999999997 7899999875 489999999987643 26799999999999986442 2335677777
Q ss_pred c--CCCEEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhCCcEeEEEEEEecCCCCCCCeEEEEEEe
Q 020508 203 Q--NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVER 280 (325)
Q Consensus 203 ~--~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvh~v~~~~D~G~Ii~Q~~~~ 280 (325)
+ ++|++|+++|++|||+++++.|++++||+||||||+|||++|++|||++|++++|+|+|+|++++|+||||+|+.++
T Consensus 72 ~~~~~Dliv~~~y~~ilp~~il~~~~~g~iNiHpSLLP~yRG~~pi~~ai~~G~~~tGvTih~~~~~~D~G~Ii~q~~~~ 151 (305)
T 2bln_A 72 AQLSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGAIVAQLRIA 151 (305)
T ss_dssp HHTCCSEEEEESCCSCCCHHHHTTCTTCEEEEESSCTTTTEESCHHHHHHHTTCSEEEEEEEECCSSTTCSCEEEEEEEE
T ss_pred HhcCCCEEEEeccccccCHHHHhcCcCCEEEecCCcCcCCCCccHHHHHHHcCCCcEEEEEEEECCCccCCCeEEEEEEe
Confidence 6 89999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCceeeec
Q 020508 281 VSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYE 318 (325)
Q Consensus 281 I~~~dt~~~l~~r~~~~~~~ll~~al~~i~~g~~~~~~ 318 (325)
|.++||..+|++|+.+.+++++.++++.+.+|++.+.+
T Consensus 152 I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g~~~~~~ 189 (305)
T 2bln_A 152 IAPDDIAITLHHKLCHAARQLLEQTLPAIKHGNILEIA 189 (305)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCBC
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCceec
Confidence 99999999999999999999999999999999887643
No 18
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Probab=100.00 E-value=5.2e-42 Score=325.71 Aligned_cols=184 Identities=26% Similarity=0.386 Sum_probs=164.7
Q ss_pred CCCceEEEEEeCCc--hHHHHHHHHhhcCCCCceEEEEEeCCCCCC-------CchHHHHHHHCCCCEEEecCCCChhHH
Q 020508 126 DPKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-------NSHVIRFLERHGIPYHYLCAKENEREE 196 (325)
Q Consensus 126 ~~~~ri~v~~Sg~g--~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~-------~~~~~~~a~~~gIp~~~~~~~~~~~~~ 196 (325)
+.++||+||++... .+|+.|++. +++|++|+|+++++. .++++++|+++|||++. +.+. +++
T Consensus 2 ~~mmrIvf~Gtp~fa~~~L~~L~~~------~~~v~~Vvt~pd~~~gRg~~l~~~pv~~~A~~~gIpv~~-~~~~--~~~ 72 (317)
T 3rfo_A 2 NAMIKVVFMGTPDFSVPVLRRLIED------GYDVIGVVTQPDRPVGRKKVLTPTPVKVEAEKHGIPVLQ-PLRI--REK 72 (317)
T ss_dssp CTTSEEEEECCSTTHHHHHHHHHHT------TCEEEEEECCCCCEETTTTEECCCHHHHHHHHTTCCEEC-CSCT--TSH
T ss_pred CCceEEEEEeCCHHHHHHHHHHHHC------CCcEEEEEeCCCcccCCCcccCCCHHHHHHHHcCCCEEc-cccC--CCH
Confidence 46799999999875 588888864 489999999987642 37899999999999974 3222 234
Q ss_pred HHHHHhc--CCCEEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhCCcEeEEEEEEecCCCCCCCeE
Q 020508 197 ELLELVQ--NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPII 274 (325)
Q Consensus 197 ~~~~~l~--~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvh~v~~~~D~G~Ii 274 (325)
+.++.|+ ++|++|+++|++|||+++|+.+++++||+|||+||+|||++|++|||++|++++|+|+|+|++++|+||||
T Consensus 73 ~~~~~l~~~~~Dliv~~~y~~ilp~~~l~~~~~g~iNiHpSlLP~yRG~~pi~~Ai~~G~~~tGvTih~~~~~~DtG~Ii 152 (317)
T 3rfo_A 73 DEYEKVLALEPDLIVTAAFGQIVPNEILEAPKYGCINVHASLLPELRGGAPIHYAIMEGKEKTGITIMYMVEKLDAGDIL 152 (317)
T ss_dssp HHHHHHHHHCCSEEEESSCCSCCCHHHHHSSTTCEEEEESSCTTSSBSSCHHHHHHHTTCSEEEEEEEECCSSTTCSCEE
T ss_pred HHHHHHHhcCCCEEEEcCchhhCCHHHHhhCcCCEEEECCccCcCCCCcCHHHHHHHcCCCceEEEEEEEcccCCCCCEE
Confidence 5567775 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCceeeec
Q 020508 275 EQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYE 318 (325)
Q Consensus 275 ~Q~~~~I~~~dt~~~l~~r~~~~~~~ll~~al~~i~~g~~~~~~ 318 (325)
+|+.++|.++||..+|++|+.+++.+++.++++.+.+|.+.+.+
T Consensus 153 ~q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g~~~~~~ 196 (317)
T 3rfo_A 153 TQVEVEIEERETTGSLFDKLSEAGAHLLSKTVPLLIQGKLEPIK 196 (317)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCBC
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 99999999999999999999999999999999999999877553
No 19
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=100.00 E-value=2.8e-42 Score=327.65 Aligned_cols=183 Identities=19% Similarity=0.288 Sum_probs=162.9
Q ss_pred CCceEEEEEeCCc--hHHHHHHHHhhcCCCCceEEEEEeCCCCCC-------CchHHHHHHHCCCCEEEecCCCChhHHH
Q 020508 127 PKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-------NSHVIRFLERHGIPYHYLCAKENEREEE 197 (325)
Q Consensus 127 ~~~ri~v~~Sg~g--~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~-------~~~~~~~a~~~gIp~~~~~~~~~~~~~~ 197 (325)
+++||+||+|... .||+.|+++ +++|++|+|+++++. .++++++|+++|||++. +.. .++++
T Consensus 6 ~~mrivf~Gt~~fa~~~L~~L~~~------~~~v~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~~-~~~--~~~~~ 76 (318)
T 3q0i_A 6 QSLRIVFAGTPDFAARHLAALLSS------EHEIIAVYTQPERPAGRGKKLTASPVKTLALEHNVPVYQ-PEN--FKSDE 76 (318)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHTS------SSEEEEEECCCC---------CCCHHHHHHHHTTCCEEC-CSC--SCSHH
T ss_pred cCCEEEEEecCHHHHHHHHHHHHC------CCcEEEEEcCCCCcccccccCCCCHHHHHHHHcCCCEEc-cCc--CCCHH
Confidence 4689999999863 688888853 489999999987653 37899999999999974 322 23457
Q ss_pred HHHHhc--CCCEEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhCCcEeEEEEEEecCCCCCCCeEE
Q 020508 198 LLELVQ--NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIE 275 (325)
Q Consensus 198 ~~~~l~--~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvh~v~~~~D~G~Ii~ 275 (325)
+.+.|+ ++|++|+++|++|||+++++.|++++||+|||+||+|||++|++|||++|++++|+|+|+|++++|+||||+
T Consensus 77 ~~~~l~~~~~Dliv~~~y~~ilp~~~l~~~~~g~iNiHpSlLP~yRG~~pi~~Ai~~G~~~tGvTih~~~~~~D~G~Ii~ 156 (318)
T 3q0i_A 77 SKQQLAALNADLMVVVAYGLLLPKVVLDTPKLGCINVHGSILPRWRGAAPIQRSIWAGDSETGVTIMQMDVGLDTGDMLK 156 (318)
T ss_dssp HHHHHHTTCCSEEEESSCCSCCCHHHHTSSTTCEEEEESSSTTTTBSSCHHHHHHHHTCSEEEEEEEECCSSSSCSCEEE
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHhhCcCCEEEeCCccCcCCCCcCHHHHHHHcCCCeEEEEEEEEcCCCCCCCEEE
Confidence 888886 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCceeeec
Q 020508 276 QMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYE 318 (325)
Q Consensus 276 Q~~~~I~~~dt~~~l~~r~~~~~~~ll~~al~~i~~g~~~~~~ 318 (325)
|+.++|.++||..+|++|+.+.+++++.++++.+.+|++.+.+
T Consensus 157 q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g~~~~~~ 199 (318)
T 3q0i_A 157 IATLPIEASDTSASMYDKLAELGPQALLECLQDIAQGTAVAVK 199 (318)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCBC
T ss_pred EEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 9999999999999999999999999999999999999887553
No 20
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=100.00 E-value=7.7e-42 Score=324.23 Aligned_cols=182 Identities=21% Similarity=0.285 Sum_probs=162.7
Q ss_pred CceEEEEEeCCc--hHHHHHHHHhhcCCCCceEEEEEeCCCCCC-------CchHHHHHHHCCCCEEEecCCCChhHHHH
Q 020508 128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-------NSHVIRFLERHGIPYHYLCAKENEREEEL 198 (325)
Q Consensus 128 ~~ri~v~~Sg~g--~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~-------~~~~~~~a~~~gIp~~~~~~~~~~~~~~~ 198 (325)
++||+||++... .+|+.|++. +++|++|+|+++++. .++++++|+++|||++. +.. .+++++
T Consensus 2 ~mrivf~Gtp~fa~~~L~~L~~~------~~~v~~Vvt~pd~~~grg~~l~~~~v~~~A~~~gIpv~~-~~~--~~~~~~ 72 (314)
T 3tqq_A 2 SLKIVFAGTPQFAVPTLRALIDS------SHRVLAVYTQPDRPSGRGQKIMESPVKEIARQNEIPIIQ-PFS--LRDEVE 72 (314)
T ss_dssp CCEEEEEECSGGGHHHHHHHHHS------SSEEEEEECCCC----------CCHHHHHHHHTTCCEEC-CSC--SSSHHH
T ss_pred CcEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeCCCCccccCCccCCCHHHHHHHHcCCCEEC-ccc--CCCHHH
Confidence 589999999865 488888863 489999999887653 47899999999999874 322 234577
Q ss_pred HHHhc--CCCEEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhCCcEeEEEEEEecCCCCCCCeEEE
Q 020508 199 LELVQ--NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQ 276 (325)
Q Consensus 199 ~~~l~--~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvh~v~~~~D~G~Ii~Q 276 (325)
.+.|+ ++|++|+++|++|||+++++.+++++||+|||+||+|||++|++|||++|++++|+|+|+|++++|+||||+|
T Consensus 73 ~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpSlLP~yRG~~pi~~Ai~~G~~~tGvTih~~~~~~D~G~Ii~q 152 (314)
T 3tqq_A 73 QEKLIAMNADVMVVVAYGLILPKKALNAFRLGCVNVHASLLPRWRGAAPIQRAILAGDRETGISIMQMNEGLDTGDVLAK 152 (314)
T ss_dssp HHHHHTTCCSEEEEESCCSCCCHHHHTSSTTCEEEEESSCTTTTBSSCHHHHHHHHTCSEEEEEEEECCSSSSCSCEEEE
T ss_pred HHHHHhcCCCEEEEcCcccccCHHHHhhCcCCEEEecCccccCCCCccHHHHHHHcCCCeeEEEEEeeecCCCCCCEEEE
Confidence 88886 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCceeeec
Q 020508 277 MVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYE 318 (325)
Q Consensus 277 ~~~~I~~~dt~~~l~~r~~~~~~~ll~~al~~i~~g~~~~~~ 318 (325)
+.++|.++||..+|++|+.+++++++.++++.+.+|++.+.+
T Consensus 153 ~~~~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g~~~~~~ 194 (314)
T 3tqq_A 153 SACVISSEDTAADLHDRLSLIGADLLLESLAKLEKGDIKLEK 194 (314)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCBC
T ss_pred EEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCc
Confidence 999999999999999999999999999999999999877553
No 21
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=100.00 E-value=1.2e-40 Score=317.98 Aligned_cols=186 Identities=17% Similarity=0.192 Sum_probs=159.1
Q ss_pred CCceEEEEEeCCchHHH-HHHHHhhcCCCCceEEEEEeCCCCCC-CchHHHHHHHCCCCEEEecCCC--ChhHHHHHHHh
Q 020508 127 PKYKVAVLASKQEHCLV-DFLYGWQEGKLPVEITCVISNHDRGP-NSHVIRFLERHGIPYHYLCAKE--NEREEELLELV 202 (325)
Q Consensus 127 ~~~ri~v~~Sg~g~~l~-~Ll~~~~~~~l~~~I~~Vvt~~~~~~-~~~~~~~a~~~gIp~~~~~~~~--~~~~~~~~~~l 202 (325)
.++||+||++ +++. .+|+++.++ +++|++|+|.++++. .+++.++|+++|||++..++.. ...++++++.|
T Consensus 21 ~~mrIvf~G~---~~fa~~~L~~L~~~--~~~i~~Vvt~pd~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~l 95 (329)
T 2bw0_A 21 QSMKIAVIGQ---SLFGQEVYCHLRKE--GHEVVGVFTVPDKDGKADPLGLEAEKDGVPVFKYSRWRAKGQALPDVVAKY 95 (329)
T ss_dssp CCCEEEEECC---HHHHHHHHHHHHHT--TCEEEEEEECCCCSSCCCHHHHHHHHHTCCEEECSCCEETTEECHHHHHHH
T ss_pred CCCEEEEEcC---cHHHHHHHHHHHHC--CCeEEEEEeCCCcCCCCCHHHHHHHHcCCCEEecCcccccccccHHHHHHH
Confidence 3589999964 3343 244444333 379999999877542 4689999999999998765211 11236778888
Q ss_pred c--CCCEEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhCCcEeEEEEEEecCCCCCCCeEEEEEEe
Q 020508 203 Q--NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVER 280 (325)
Q Consensus 203 ~--~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvh~v~~~~D~G~Ii~Q~~~~ 280 (325)
+ ++|++|+++||+|||+++|+.|++++||+||||||+|||++|++|||++|++++|+|+|+|++++|+||||+|+.++
T Consensus 96 ~~~~~Dliv~a~y~~ilp~~il~~~~~g~iNiHpSLLP~yRG~~pi~~Ai~~G~~~tGvTvh~~~~~lDtG~Ii~Q~~v~ 175 (329)
T 2bw0_A 96 QALGAELNVLPFCSQFIPMEIISAPRHGSIIYHPSLLPRHRGASAINWTLIHGDKKGGFSIFWADDGLDTGDLLLQKECE 175 (329)
T ss_dssp HTTCCSEEEESSCSSCCCHHHHTCSTTCEEEEESSCTTTTBSSCHHHHHHHTTCSEEEEEEEECCSSSSCSCEEEEEEEE
T ss_pred HhcCCCEEEEeehhhhCCHHHHhhCcCCEEEEcCCcCcCCCCcCHHHHHHHcCCCcEEEEEEEECCcCcCCCEEEEEEEe
Confidence 6 89999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHH-HHHHHHHHHHHHHHHHHhCceeee
Q 020508 281 VSHRDNLRTFVQK-SEDVEKQCLAKAIKSYCELRVLPY 317 (325)
Q Consensus 281 I~~~dt~~~l~~r-~~~~~~~ll~~al~~i~~g~~~~~ 317 (325)
|.++||..+|++| +...+.+++.++++.+.+|++.+.
T Consensus 176 I~~~dt~~~L~~r~l~~~~~~ll~~~l~~l~~g~~~~~ 213 (329)
T 2bw0_A 176 VLPDDTVSTLYNRFLFPEGIKGMVQAVRLIAEGKAPRL 213 (329)
T ss_dssp CCTTCCHHHHHHHTTTHHHHHHHHHHHHHHHHTCCCCB
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 9999999999999 588999999999999999988654
No 22
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Probab=100.00 E-value=1e-39 Score=336.80 Aligned_cols=181 Identities=21% Similarity=0.277 Sum_probs=163.8
Q ss_pred ceEEEEEeCC--chHHHHHHHHhhcCCCCceEEEEEeCCCCCC----CchHHHHHHHCCCCEEEecCCCChhHHHHHHHh
Q 020508 129 YKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGP----NSHVIRFLERHGIPYHYLCAKENEREEELLELV 202 (325)
Q Consensus 129 ~ri~v~~Sg~--g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~----~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l 202 (325)
+||+||+|+. ++||++|+++ +++|++|+|+++++. .++++++|+++|||++..++ .+++++.+.|
T Consensus 1 ~ri~~~~s~~~~~~~l~~l~~~------~~~i~~v~t~~~~~~~~~~~~~~~~~a~~~~ip~~~~~~---~~~~~~~~~l 71 (660)
T 1z7e_A 1 MKTVVFAYHDMGCLGIEALLAA------GYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDN---VNHPLWVERI 71 (660)
T ss_dssp CEEEEEECHHHHHHHHHHHHHT------TCEEEEEECCCC--------CCHHHHHHHHTCCEECCSC---TTSHHHHHHH
T ss_pred CEEEEEEeCHHHHHHHHHHHhC------CCCEEEEEeCCCCCccCcCccHHHHHHHHcCCCEeccCC---CCcHHHHHHH
Confidence 5999999998 7999999975 589999999987642 26799999999999986442 2345677777
Q ss_pred c--CCCEEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhCCcEeEEEEEEecCCCCCCCeEEEEEEe
Q 020508 203 Q--NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVER 280 (325)
Q Consensus 203 ~--~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvh~v~~~~D~G~Ii~Q~~~~ 280 (325)
+ ++|++|+++||+|||+++|+.|++++||+||||||+|||++|++|||++|++++|+|+|+|++++|+||||+|+.++
T Consensus 72 ~~~~~d~iv~~~~~~il~~~~l~~~~~~~iNiH~slLP~~rG~~p~~~ai~~g~~~~G~t~~~~~~~~D~G~ii~q~~~~ 151 (660)
T 1z7e_A 72 AQLSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGAIVAQLRIA 151 (660)
T ss_dssp HHHCCSEEEEESCCSCCCHHHHTTCTTCEEEEESSSTTTTCSSCHHHHHHHTTCSEEEEEEEECCSSTTTSCEEEEEEEE
T ss_pred HhcCCCEEEEcCcccccCHHHHhcCCCCeEEecCCcCCCCCCccHHHHHHHcCCCcEEEEEEEECCCccCCCeeEEEEEe
Confidence 6 89999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCceeeec
Q 020508 281 VSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYE 318 (325)
Q Consensus 281 I~~~dt~~~l~~r~~~~~~~ll~~al~~i~~g~~~~~~ 318 (325)
|.++||.++|++|+.+.++++++++++.+.+|++.+.+
T Consensus 152 i~~~dt~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 189 (660)
T 1z7e_A 152 IAPDDIAITLHHKLCHAARQLLEQTLPAIKHGNILEIA 189 (660)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCBC
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCceee
Confidence 99999999999999999999999999999999887653
No 23
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory FO structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum} SCOP: b.46.1.1 c.65.1.1
Probab=99.97 E-value=3.8e-31 Score=243.73 Aligned_cols=112 Identities=16% Similarity=0.293 Sum_probs=101.1
Q ss_pred HHHHhc--CCCEEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhCCcEeEEEEEEecCCCCCCCeEE
Q 020508 198 LLELVQ--NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIE 275 (325)
Q Consensus 198 ~~~~l~--~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvh~v~~~~D~G~Ii~ 275 (325)
+.+.|+ ++|++|+++|++|||+++++. +++||+|||+||+|||++|++|||++|++++|+|+|+|++++|+||||+
T Consensus 69 ~~~~L~~~~pDliv~~~y~~ilp~~il~~--~g~iNiHpSLLP~yRG~~pi~~Ai~~G~~~tGvTih~~~~~lDtG~Ii~ 146 (260)
T 1zgh_A 69 TFEKVKLINPEYILFPHWSWIIPKEIFEN--FTCVVFHMTDLPFGRGGSPLQNLIERGIKKTKISAIKVDGGIDTGDIFF 146 (260)
T ss_dssp CHHHHHHHCCSEEEESSCCSCCCHHHHTT--SCEEEEESSCTTTTEESCHHHHHHHTTCCEEEEEEEECCSSSSCSCEEE
T ss_pred HHHHHHhcCCCEEEEeccccccCHHHHcc--CCEEEEeCCcCCCCCCcCHHHHHHHcCCCcEEEEEEEEccCccCCCeEE
Confidence 444554 899999999999999999996 5799999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHhCceeee
Q 020508 276 QMVERVSHRDNLRTFVQKSEDVEK-QCLAKAIKSYCELRVLPY 317 (325)
Q Consensus 276 Q~~~~I~~~dt~~~l~~r~~~~~~-~ll~~al~~i~~g~~~~~ 317 (325)
|+.++|. ||..+|++|+.+++. +++.+++ +|++.+.
T Consensus 147 Q~~v~I~--dt~~~L~~rl~~~~~~~ll~~~~----~g~~~~~ 183 (260)
T 1zgh_A 147 KRDLDLY--GTAEEIFMRASKIIFNDMIPELL----TKRPVPQ 183 (260)
T ss_dssp EEEEECC--SCHHHHHHHHHHHHHHTHHHHHH----HHCCCCB
T ss_pred EEEEecc--CCHHHHHHHHHHHHHHHHHHHHH----cCCCcce
Confidence 9999998 899999999999999 8877654 4555443
No 24
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=99.57 E-value=2.5e-14 Score=139.36 Aligned_cols=119 Identities=9% Similarity=0.014 Sum_probs=89.8
Q ss_pred cceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhccccee
Q 020508 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSV 119 (325)
Q Consensus 40 ~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~~~ 119 (325)
..+++||++|+||||||++||++|+++|+||+|++|+.. .|.|+|++.+++|....+.++|+++|+.++++++++
T Consensus 10 ~~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~--~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~--- 84 (415)
T 3p96_A 10 KVSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVI--RHRLTLGVLVCCPADVADGPALRHDVEAAIRKVGLD--- 84 (415)
T ss_dssp CEEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEE--TTEEEEEEEEEECHHHHTSHHHHHHHHHHHHHTTCE---
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEE--CCEeEEEEEEEecCCcCCHHHHHHHHHHHHHHcCeE---
Confidence 468999999999999999999999999999999999864 789999999999872225699999999999999998
Q ss_pred eeecCC------CCCce-EEEEEe-C-CchHHHHHHHHhhcCCCCceEEEEEe
Q 020508 120 VRVPDI------DPKYK-VAVLAS-K-QEHCLVDFLYGWQEGKLPVEITCVIS 163 (325)
Q Consensus 120 ~~~~~~------~~~~r-i~v~~S-g-~g~~l~~Ll~~~~~~~l~~~I~~Vvt 163 (325)
|++... +++.+ ++.+.+ . .+..+.++...+.+..++++-..-++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~ 137 (415)
T 3p96_A 85 VSIERSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVS 137 (415)
T ss_dssp EEEEECSSSCSSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred EEEEECCcccccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeecc
Confidence 443332 12223 333333 3 36777777777665555555444444
No 25
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=99.48 E-value=2.7e-13 Score=104.57 Aligned_cols=74 Identities=24% Similarity=0.163 Sum_probs=68.5
Q ss_pred ceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcccc
Q 020508 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR 117 (325)
Q Consensus 41 ~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~ 117 (325)
+.+.+++.|+||||++++||++|+++|+||+++++... .+.|+|++++++|+ ..+.++|.++|.+++++++++.
T Consensus 4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~--~~~~~~~i~v~~~~-~~~l~~l~~~L~~~~~~~~~~~ 77 (91)
T 1zpv_A 4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVL--DEYFTMMAVVSSDE-KQDFTYLRNEFEAFGQTLNVKI 77 (91)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEE--TTEEEEEEEEEESS-CCCHHHHHHHHHHHHHHHTEEE
T ss_pred ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEE--cCEEEEEEEEEeCC-CCCHHHHHHHHHHHHHHcCCEE
Confidence 57899999999999999999999999999999999765 38999999999998 6789999999999999999873
No 26
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=99.45 E-value=9.3e-14 Score=122.70 Aligned_cols=78 Identities=19% Similarity=0.235 Sum_probs=70.4
Q ss_pred CCCcceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccC----CCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhh
Q 020508 37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE----KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKM 112 (325)
Q Consensus 37 ~~~~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~----~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~ 112 (325)
.....+++|++.|+||||||++||++|+++|+||.++++++.. ..+.|+|++++.+|+ +.+ ++|+++|.+++++
T Consensus 88 ~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~-~~~-~~l~~~l~~~a~~ 165 (195)
T 2nyi_A 88 SPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPF-PLY-QEVVTALSRVEEE 165 (195)
T ss_dssp CTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEG-GGH-HHHHHHHHHHHHH
T ss_pred CCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcCC-Ccc-HHHHHHHHHHHHH
Confidence 3446789999999999999999999999999999999999753 457999999999987 666 9999999999999
Q ss_pred hccc
Q 020508 113 FNAM 116 (325)
Q Consensus 113 l~~~ 116 (325)
|+++
T Consensus 166 l~~d 169 (195)
T 2nyi_A 166 FGVD 169 (195)
T ss_dssp HTCE
T ss_pred cCeE
Confidence 9988
No 27
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=99.36 E-value=6.8e-12 Score=110.03 Aligned_cols=74 Identities=14% Similarity=0.125 Sum_probs=66.6
Q ss_pred cceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcccc
Q 020508 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR 117 (325)
Q Consensus 40 ~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~ 117 (325)
..+++|++.|+||||||++||++|+++|+||++++++. ..|.|+|++.+..|. ...++|+++|.+++++++++.
T Consensus 4 ~~~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~--~~~~f~~~~~v~~~~--~~~~~l~~~L~~~~~~~~~~~ 77 (192)
T 1u8s_A 4 TQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAM--FGKEFTLLMLISGSP--SNITRVETTLPLLGQQHDLIT 77 (192)
T ss_dssp CEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE--ETTEEEEEEEEEECH--HHHHHHHHHHHHHHHHHTCEE
T ss_pred CcEEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeee--cCCceEEEEEEecCC--CCHHHHHHHHHHHHHhcCCEE
Confidence 35799999999999999999999999999999999987 478999999999875 368999999999999988773
No 28
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=99.36 E-value=3.9e-12 Score=111.59 Aligned_cols=78 Identities=15% Similarity=0.141 Sum_probs=70.3
Q ss_pred CCcceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccC------CCCeEEEEEEEEeCCCCCChHHHHHHHHhhhh
Q 020508 38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE------KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (325)
Q Consensus 38 ~~~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~------~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~ 111 (325)
.....+++++.|+||||||++||++|+++|+||.++++++.. ..+.|+|++++..|+ +.+.++|+++|.++++
T Consensus 89 ~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~~-~~~~~~l~~~l~~~~~ 167 (192)
T 1u8s_A 89 THAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDS-GCNLMQLQEEFDALCT 167 (192)
T ss_dssp CCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECT-TSCHHHHHHHHHHHHH
T ss_pred cCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCCC-CCCHHHHHHHHHHHHH
Confidence 345789999999999999999999999999999999998754 467999999999997 7889999999999999
Q ss_pred hhccc
Q 020508 112 MFNAM 116 (325)
Q Consensus 112 ~l~~~ 116 (325)
+++++
T Consensus 168 ~~~~~ 172 (192)
T 1u8s_A 168 ALDVQ 172 (192)
T ss_dssp HHTCE
T ss_pred HhCce
Confidence 99987
No 29
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=99.31 E-value=8.6e-12 Score=110.04 Aligned_cols=74 Identities=12% Similarity=0.079 Sum_probs=65.7
Q ss_pred CcceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCC----hHHHHHHHHhhhhhhc
Q 020508 39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWP----REQMDEDFFKLSKMFN 114 (325)
Q Consensus 39 ~~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~----~~~L~~~l~~l~~~l~ 114 (325)
+.++++|+|.|+||||||++||++|+++|+||++.++++ ..|.|+|++.+..+. . + .++|+++|.+++++++
T Consensus 2 ~~~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~--~~~~f~m~~~v~~~~-~-~~~~~~~~l~~~L~~~~~~~~ 77 (195)
T 2nyi_A 2 ETQSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMAC--LGGDFAMIVLVSLNA-K-DGKLIQSALESALPGFQISTR 77 (195)
T ss_dssp CCEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE--ETTEEEEEEEEEESS-S-SSHHHHHHHHHHSTTCEEEEE
T ss_pred CceEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEE--ECCeEEEEEEEEecC-c-cchhHHHHHHHHHHHHHHhcC
Confidence 346899999999999999999999999999999999986 478999999999876 2 4 6899999999998888
Q ss_pred cc
Q 020508 115 AM 116 (325)
Q Consensus 115 ~~ 116 (325)
+.
T Consensus 78 ~~ 79 (195)
T 2nyi_A 78 RA 79 (195)
T ss_dssp EC
T ss_pred Ce
Confidence 54
No 30
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=98.46 E-value=2.9e-07 Score=69.48 Aligned_cols=64 Identities=13% Similarity=0.092 Sum_probs=50.2
Q ss_pred ceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhh
Q 020508 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (325)
Q Consensus 41 ~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~ 110 (325)
.++.+++.++||||++++|+++|+++|+||.++.+... .+.+.+.+.+++++ .+.+.+.++++.
T Consensus 4 ~~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~--~~~~~~~i~v~~~~----~~~l~~l~~~L~ 67 (88)
T 2ko1_A 4 FLAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAK--DGIFTCNLMIFVKN----TDKLTTLMDKLR 67 (88)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEEC--SSEEEEEEEEEESS----HHHHHHHHHHHT
T ss_pred EEEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEc--CCEEEEEEEEEECC----HHHHHHHHHHHh
Confidence 57789999999999999999999999999999998653 23777778887776 344444444444
No 31
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=98.26 E-value=7e-06 Score=79.46 Aligned_cols=107 Identities=11% Similarity=-0.013 Sum_probs=83.2
Q ss_pred CCccccccCCCC-CCCCcceEEEEEEcCC-CcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHH
Q 020508 24 SLKFPGEPIESS-VSPTLTHGIHVFHCPD-EVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQ 101 (325)
Q Consensus 24 ~~~~~~~~~~~~-~~~~~~~~~ltv~g~D-rpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~ 101 (325)
++++++.+.+.. ..+...++.+++.|.| ++|++++|+.+++++|+||.++..... ...|.+.+.+.+|+ .+.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~--~~~~~~~~~v~~~~--~~~~~ 157 (415)
T 3p96_A 82 GLDVSIERSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSD--YPVIGLELRVSVPP--GADEA 157 (415)
T ss_dssp TCEEEEEECSSSCSSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEES--SSSEEEEEEEECCT--TCHHH
T ss_pred CeEEEEEECCcccccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccC--CCceEEEEEeeCCC--CCHHH
Confidence 566777776443 2345679999999999 999999999999999999999998652 45666667777766 57899
Q ss_pred HHHHHHhhhhhhcccceeeeecCCCCCceEEEE
Q 020508 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVL 134 (325)
Q Consensus 102 L~~~l~~l~~~l~~~~~~~~~~~~~~~~ri~v~ 134 (325)
++++|.++++++++|-...+-....+++|+++|
T Consensus 158 l~~~l~~l~~~~~vD~~v~~~~~~~~~~k~viF 190 (415)
T 3p96_A 158 LRTALNRVSSEEHVDVAVEDYTLERRAKRLIVF 190 (415)
T ss_dssp HHHHHHHHHHHHTCEEEEEECSTTTTCCCEEEE
T ss_pred HHHHHHHHhhhcCcCcccccccccccCCcEEEE
Confidence 999999999999998544333224566787777
No 32
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=97.68 E-value=6.8e-05 Score=64.11 Aligned_cols=75 Identities=17% Similarity=0.194 Sum_probs=58.8
Q ss_pred ceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcccc
Q 020508 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR 117 (325)
Q Consensus 41 ~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~ 117 (325)
+.+.+++...||||+.++|++.|+++|+||.+++.......+...|.+.++-+ ....+++.++|.++-+=+.+.+
T Consensus 2 ~~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~d--~~~leqI~kqL~Kl~dV~~V~r 76 (164)
T 2f1f_A 2 ARRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGD--EKVLEQIEKQLHKLVDVLRVSE 76 (164)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESC--HHHHHHHHHHHHHSTTEEEEEE
T ss_pred eEEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEecc--HHHHHHHHHHHcCCCCEEEEEE
Confidence 36889999999999999999999999999999998643335777777777632 2456788888887766555543
No 33
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=97.52 E-value=0.00015 Score=64.47 Aligned_cols=89 Identities=17% Similarity=0.215 Sum_probs=61.0
Q ss_pred ceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccC--C-CCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcccc
Q 020508 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE--K-KNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR 117 (325)
Q Consensus 41 ~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~--~-~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~ 117 (325)
+...|.+.+.||||++++|++.|+++++||..++++... . .+...+. +++.+ . +.+++-+.|+.+-.=..+.
T Consensus 3 ~~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~--IEV~d-~-~Le~LL~kLrkI~gV~~V~- 77 (223)
T 1y7p_A 3 MLRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIY--FEIEG-G-DFEKILERVKTFDYIIEIE- 77 (223)
T ss_dssp -CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEE--EEECS-S-CHHHHHHHHHTCTTEEEEE-
T ss_pred ceEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEE--EEECC-C-CHHHHHHHHhCCCCeeEEE-
Confidence 367889999999999999999999999999999998642 0 3566655 77776 4 7788888888776555444
Q ss_pred eeeeecCCCC--CceEEEEEeC
Q 020508 118 SVVRVPDIDP--KYKVAVLASK 137 (325)
Q Consensus 118 ~~~~~~~~~~--~~ri~v~~Sg 137 (325)
|.....+ -+||-+++-|
T Consensus 78 ---Rv~~~~~i~gkrvii~ggg 96 (223)
T 1y7p_A 78 ---EEESFERVFGKRVIILGGG 96 (223)
T ss_dssp ---EECCHHHHTCEEEEEEECH
T ss_pred ---EEcchhhhcCcEEEEECCc
Confidence 3322211 3688888755
No 34
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=97.47 E-value=0.00019 Score=61.35 Aligned_cols=75 Identities=17% Similarity=0.119 Sum_probs=59.4
Q ss_pred ceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcccc
Q 020508 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR 117 (325)
Q Consensus 41 ~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~ 117 (325)
+++.+++...||||..++|++.|+++|+||.+++.......|...|.+.++-++ ...+++.++|.++-+=+.+.+
T Consensus 3 m~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d~--~~leql~kQL~Kl~dV~~V~~ 77 (165)
T 2pc6_A 3 MRHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPD--EIVEQITKQLNKLIEVVKLID 77 (165)
T ss_dssp EEEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECH--HHHHHHHHHHHHSTTEEEEEE
T ss_pred eEEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEeccH--HHHHHHHHHhcCCCCEEEEEE
Confidence 368999999999999999999999999999999986433457777777776432 457888888888766655553
No 35
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=97.37 E-value=0.00064 Score=59.41 Aligned_cols=75 Identities=19% Similarity=0.177 Sum_probs=59.6
Q ss_pred cceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhccc
Q 020508 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (325)
Q Consensus 40 ~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~ 116 (325)
.+.+.|++.-.|+||..++|++.++++|+||..+...-....+.-.|.+.++-++ ...+++.++|.++-+-+.+.
T Consensus 27 ~m~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~e--~~ieqL~kQL~KLidVikV~ 101 (193)
T 2fgc_A 27 IREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDD--KTIEQIEKQAYKLVEVVKVT 101 (193)
T ss_dssp CEEEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECT--THHHHHHHHHTTSTTEEEEE
T ss_pred ceEEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECCH--HHHHHHHHHhcCcCceEEEE
Confidence 3578999999999999999999999999999999986433457777777776554 46889999888875544443
No 36
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=97.27 E-value=0.00096 Score=56.66 Aligned_cols=106 Identities=11% Similarity=0.000 Sum_probs=69.5
Q ss_pred ceEEEEEEc-CCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhccccee
Q 020508 41 THGIHVFHC-PDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSV 119 (325)
Q Consensus 41 ~~~~ltv~g-~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~~~ 119 (325)
....+++.| +|+||+.++|.+.|+++|+||..+.|...+ .|.+.+.+.+ +. .+.+...+.|+++.++++...
T Consensus 24 ~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~-~g~~~isf~v--~~--~~~~~a~~~l~~~~~~l~~~~-- 96 (167)
T 2re1_A 24 NQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGS-EGTTDFSFTV--PR--GDYKQTLEILSERQDSIGAAS-- 96 (167)
T ss_dssp CCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC-----CEEEEEEEE--CG--GGHHHHHHHHHHSSTTTTCSE--
T ss_pred CEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCC-CCeeEEEEEE--ec--hHHHHHHHHHHHHHHHcCCce--
Confidence 345788887 999999999999999999999999885432 3566655555 43 245677888998888887643
Q ss_pred eeecCCCCCceEEEEEeC---CchHHHHHHHHhhcCCCC
Q 020508 120 VRVPDIDPKYKVAVLASK---QEHCLVDFLYGWQEGKLP 155 (325)
Q Consensus 120 ~~~~~~~~~~ri~v~~Sg---~g~~l~~Ll~~~~~~~l~ 155 (325)
+... ..-.+|.+.+.| ...-+..++..+.+..++
T Consensus 97 i~~~--~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~In 133 (167)
T 2re1_A 97 IDGD--DTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGIN 133 (167)
T ss_dssp EEEE--SSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCC
T ss_pred EEec--CCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCc
Confidence 2221 234567777766 212344555555444433
No 37
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=96.99 E-value=0.0084 Score=50.67 Aligned_cols=106 Identities=14% Similarity=0.042 Sum_probs=70.8
Q ss_pred ceEEEEEEc-CCCcchHHHHHHHHHhcCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcccce
Q 020508 41 THGIHVFHC-PDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS 118 (325)
Q Consensus 41 ~~~~ltv~g-~DrpGIVa~Vt~~La~~giNI~~l~~~~~~-~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~~ 118 (325)
....+++.| +|+||+.+++.+.|+++|+||.-++|...+ ..|...+.+.+ +. .+.+...+.|+++.++++. .
T Consensus 15 ~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V--~~--~d~~~a~~~L~~~~~~~~~-~- 88 (167)
T 2dt9_A 15 DHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTV--KK--DFAQEALEALEPVLAEIGG-E- 88 (167)
T ss_dssp SEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEE--EG--GGHHHHHHHHHHHHHHHCC-E-
T ss_pred CEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEE--eh--HHHHHHHHHHHHHHHHhCC-c-
Confidence 356778877 899999999999999999999998884321 13455555555 43 2456677888888888875 2
Q ss_pred eeeecCCCCCceEEEEEeC---CchHHHHHHHHhhcCCCC
Q 020508 119 VVRVPDIDPKYKVAVLASK---QEHCLVDFLYGWQEGKLP 155 (325)
Q Consensus 119 ~~~~~~~~~~~ri~v~~Sg---~g~~l~~Ll~~~~~~~l~ 155 (325)
+.+. ..--+|.+.+.| ....+..+...+.+..++
T Consensus 89 -v~~~--~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~In 125 (167)
T 2dt9_A 89 -AILR--PDIAKVSIVGVGLASTPEVPAKMFQAVASTGAN 125 (167)
T ss_dssp -EEEE--CSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCC
T ss_pred -EEEe--CCEEEEEEECCCcccCcCHHHHHHHHHHHCCCC
Confidence 3332 245688888877 222344555555444443
No 38
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=96.96 E-value=0.025 Score=46.24 Aligned_cols=96 Identities=9% Similarity=0.025 Sum_probs=59.7
Q ss_pred cceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhccccee
Q 020508 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSV 119 (325)
Q Consensus 40 ~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~~~ 119 (325)
.+...+++..+|+||+.+++++.|+++|+||..+.+......|. .++. .. +.+..++.|++. |....
T Consensus 4 m~~~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~--~~~~--~~----d~~~a~~~L~~~----G~~v~- 70 (144)
T 2f06_A 4 MVAKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGI--LRGI--VS----DPDKAYKALKDN----HFAVN- 70 (144)
T ss_dssp SEEEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEE--EEEE--ES----CHHHHHHHHHHT----TCCEE-
T ss_pred cEEEEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCE--EEEE--eC----CHHHHHHHHHHc----CCeEe-
Confidence 35688999999999999999999999999999998853221132 2333 22 467777777754 33211
Q ss_pred eeecCCCCCceEEEEEeCCchHHHHHHHHhhcCCCC
Q 020508 120 VRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLP 155 (325)
Q Consensus 120 ~~~~~~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~ 155 (325)
.. --+++-..+....+..+...+.+.+++
T Consensus 71 --~~-----svv~v~~~d~pGvla~i~~~L~~~~In 99 (144)
T 2f06_A 71 --IT-----DVVGISCPNVPGALAKVLGFLSAEGVF 99 (144)
T ss_dssp --EE-----EEEEEEEESSTTHHHHHHHHHHHTTCC
T ss_pred --ee-----eEEEEEeCCCCcHHHHHHHHHHHCCCC
Confidence 11 134444444444455555555554444
No 39
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=96.75 E-value=0.0023 Score=53.72 Aligned_cols=66 Identities=11% Similarity=0.175 Sum_probs=47.3
Q ss_pred EEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCC-CChHHHHHHHHhhhhhhccc
Q 020508 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIK-WPREQMDEDFFKLSKMFNAM 116 (325)
Q Consensus 44 ~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~-~~~~~L~~~l~~l~~~l~~~ 116 (325)
.|.|.|.||+|++++|+++|+++++||..++.... |. +.+.+|..+ .....|...+..+...+...
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~---g~----i~~~~~~~~~~~~~~L~~~l~~i~~~~~~~ 68 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI---GR----IYLNFAELEFESFSSLMAEIRRIAGVTDVR 68 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT---TE----EEEEECCCCHHHHHHHHHHHHHSTTEEEEE
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC---CE----EEEEEEeCCHHHHHHHHHHHHcCCCeeEEE
Confidence 47899999999999999999999999999999532 54 334445311 23566667777666555443
No 40
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=96.47 E-value=0.008 Score=60.19 Aligned_cols=66 Identities=17% Similarity=0.113 Sum_probs=49.1
Q ss_pred ceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhh
Q 020508 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (325)
Q Consensus 41 ~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~ 110 (325)
..+.+.+.-+|+||+|++|++.|+++|+||.+++..-....+.-.|.+.++-+. + +++.+++.++.
T Consensus 453 ~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~~~---~-~~~l~~l~~~~ 518 (529)
T 1ygy_A 453 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDV---P-DDVRTAIAAAV 518 (529)
T ss_dssp CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSCC---C-HHHHHHHHHHH
T ss_pred CccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECCCC---C-HHHHHHHhcCC
Confidence 467788889999999999999999999999999875433455666666665443 3 55556566543
No 41
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=96.09 E-value=0.044 Score=47.98 Aligned_cols=110 Identities=16% Similarity=0.062 Sum_probs=73.6
Q ss_pred ceEEEEEEc-CCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhccccee
Q 020508 41 THGIHVFHC-PDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSV 119 (325)
Q Consensus 41 ~~~~ltv~g-~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~~~ 119 (325)
....+|+.| +|+||+.++|=+.|+++|+||.-+.|.....+ .....+.+.+|. .+.+...+.|+++..+++.....
T Consensus 34 ~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~-~~~~~~sftv~~--~d~~~~~~~l~~~~~~~~~~~v~ 110 (200)
T 4go7_X 34 SEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVE-DGKTDITFTCSR--DVGPAAVEKLDSLRNEIGFSQLL 110 (200)
T ss_dssp SEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC---CCEEEEEEEEEG--GGHHHHHHHHHTTHHHHCCSEEE
T ss_pred CEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeecccccc-ccceEEEEecch--hhHHHHHHHHHHHHhhhceeeEE
Confidence 345677766 79999999999999999999998888543212 233466677776 35777888889998888776532
Q ss_pred eeecCCCCCceEEEEEeCC-ch--HHHHHHHHhhcCCCCce
Q 020508 120 VRVPDIDPKYKVAVLASKQ-EH--CLVDFLYGWQEGKLPVE 157 (325)
Q Consensus 120 ~~~~~~~~~~ri~v~~Sg~-g~--~l~~Ll~~~~~~~l~~~ 157 (325)
+. ..--||.+.+.|= ++ -...+..++.+..++.+
T Consensus 111 ~~----~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~ 147 (200)
T 4go7_X 111 YD----DHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIE 147 (200)
T ss_dssp EE----CCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCC
T ss_pred Ee----cCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEE
Confidence 22 2346899988873 21 23345555544444433
No 42
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=95.82 E-value=0.023 Score=54.98 Aligned_cols=65 Identities=15% Similarity=0.126 Sum_probs=49.0
Q ss_pred ceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhh
Q 020508 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (325)
Q Consensus 41 ~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l 109 (325)
....+.+.-.|+||++++|+++|+++|+||..+.... .++.-+|.++++-+. . ..+++.++|+++
T Consensus 330 ~~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r--~g~~A~~vidvD~~~-~-~~~~~l~~l~~i 394 (404)
T 1sc6_A 330 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQT--SAQMGYVVIDIEADE-D-VAEKALQAMKAI 394 (404)
T ss_dssp SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEE--CSSEEEEEEEEECCH-H-HHHHHHHHHHTS
T ss_pred CcceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccC--CCCEEEEEEEcCCCC-C-CCHHHHHHHhcC
Confidence 3556888899999999999999999999999988754 356777777776651 0 135566666554
No 43
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=95.79 E-value=0.034 Score=45.41 Aligned_cols=58 Identities=19% Similarity=0.160 Sum_probs=40.1
Q ss_pred EEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhh
Q 020508 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (325)
Q Consensus 44 ~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l 109 (325)
++.+.-+|+||.++++++.|+++|+||..+.++. ..+.-.+. +... +.+...++|++.
T Consensus 74 vv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~--~~~~~~~~--i~~~----d~~~A~~~L~~~ 131 (144)
T 2f06_A 74 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFA--NNNVANVV--IRPS----NMDKCIEVLKEK 131 (144)
T ss_dssp EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEE--ETTEEEEE--EEES----CHHHHHHHHHHT
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEc--cCCcEEEE--EEeC----CHHHHHHHHHHc
Confidence 5666778999999999999999999998877652 12333333 3332 456666666653
No 44
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=95.57 E-value=0.12 Score=43.97 Aligned_cols=107 Identities=16% Similarity=0.018 Sum_probs=67.5
Q ss_pred eEEEEEE-cCCCcchHHHHHHHHHhcCCeEeEeeeecc-CCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhccccee
Q 020508 42 HGIHVFH-CPDEVGIVAKLSECIASRGGNILAADVFVP-EKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSV 119 (325)
Q Consensus 42 ~~~ltv~-g~DrpGIVa~Vt~~La~~giNI~~l~~~~~-~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~~~ 119 (325)
-..+++. .+|+||+.++|.+.|+++|+||.-+.+... +..+.-.+.+. ++. .+.+...+.|+++.++++...
T Consensus 15 ~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~--v~~--~d~~~a~~~l~~~~~~~~~~~-- 88 (178)
T 2dtj_A 15 EAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFT--CPR--SDGRRAMEILKKLQVQGNWTN-- 88 (178)
T ss_dssp EEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEE--EEH--HHHHHHHHHHHTTTTTTTCSE--
T ss_pred EEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEE--Ecc--ccHHHHHHHHHHHHHhcCCCe--
Confidence 3455663 489999999999999999999999888532 22332222233 333 235667788888877777642
Q ss_pred eeecCCCCCceEEEEEeCCc---hHHHHHHHHhhcCCCCc
Q 020508 120 VRVPDIDPKYKVAVLASKQE---HCLVDFLYGWQEGKLPV 156 (325)
Q Consensus 120 ~~~~~~~~~~ri~v~~Sg~g---~~l~~Ll~~~~~~~l~~ 156 (325)
+.. ...--+|.+.++|-. .-+..+...+.+..++.
T Consensus 89 v~~--~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI 126 (178)
T 2dtj_A 89 VLY--DDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNI 126 (178)
T ss_dssp EEE--ESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCC
T ss_pred EEE--eCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCE
Confidence 222 234578888888642 23445666655544443
No 45
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=95.34 E-value=0.0081 Score=57.56 Aligned_cols=57 Identities=18% Similarity=0.366 Sum_probs=35.7
Q ss_pred ecCCCCCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEE
Q 020508 122 VPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYH 185 (325)
Q Consensus 122 ~~~~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~ 185 (325)
||+.++|+||+|+++|.|.. -+.+++.-.-+.++++|+... .....++|+++|+|++
T Consensus 1 M~~~~~~~rv~VvG~G~g~~---h~~a~~~~~~~~elvav~~~~----~~~a~~~a~~~gv~~~ 57 (372)
T 4gmf_A 1 MPSASPKQRVLIVGAKFGEM---YLNAFMQPPEGLELVGLLAQG----SARSRELAHAFGIPLY 57 (372)
T ss_dssp ------CEEEEEECSTTTHH---HHHTTSSCCTTEEEEEEECCS----SHHHHHHHHHTTCCEE
T ss_pred CCCCCCCCEEEEEehHHHHH---HHHHHHhCCCCeEEEEEECCC----HHHHHHHHHHhCCCEE
Confidence 46677899999999987653 233333221147899988654 2457889999999975
No 46
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=94.40 E-value=0.33 Score=45.16 Aligned_cols=101 Identities=17% Similarity=0.244 Sum_probs=64.6
Q ss_pred CceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCC-CchH----HHHHHHCCCCEEEecCCCChhHHHHHHHh
Q 020508 128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP-NSHV----IRFLERHGIPYHYLCAKENEREEELLELV 202 (325)
Q Consensus 128 ~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~-~~~~----~~~a~~~gIp~~~~~~~~~~~~~~~~~~l 202 (325)
.+||++++-+.......++..+.. ++.++. ++.|+... +..+ .+.|++.|..+.... ++.+.+
T Consensus 148 gl~va~vGD~~~rva~Sl~~~~~~--~g~~v~--~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~--------d~~eav 215 (307)
T 2i6u_A 148 GLRLSYFGDGANNMAHSLLLGGVT--AGIHVT--VAAPEGFLPDPSVRAAAERRAQDTGASVTVTA--------DAHAAA 215 (307)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHHH--TTCEEE--EECCTTSCCCHHHHHHHHHHHHHHTCCEEEES--------CHHHHH
T ss_pred CeEEEEECCCCcCcHHHHHHHHHH--CCCEEE--EECCccccCCHHHHHHHHHHHHHcCCeEEEEE--------CHHHHh
Confidence 578999776622333445554332 346644 33343322 2224 345568898776543 234556
Q ss_pred cCCCEEEEecc-----------------ccccChhHHhhcCCCEEEEcCCCCCCCCC
Q 020508 203 QNTDFLVLARY-----------------MQILSGKFLRSYGKDVINIHHGLLPSFKG 242 (325)
Q Consensus 203 ~~~Dliv~~g~-----------------~~il~~~~l~~~~~~~iNiHpslLP~yRG 242 (325)
+++|++..-.| .+.+++++++..+..++-+|| ||.+||
T Consensus 216 ~~aDvvy~~~w~smg~~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~--lP~~Rg 270 (307)
T 2i6u_A 216 AGADVLVTDTWTSMGQENDGLDRVKPFRPFQLNSRLLALADSDAIVLHC--LPAHRG 270 (307)
T ss_dssp TTCSEEEECCSSCTTCTTSCCCSSGGGGGGCBCHHHHHHSCTTCEEEEC--SCCCBT
T ss_pred cCCCEEEecceecCCcccchHHHHHHHhhcCCCHHHHhhcCCCcEEECC--CCCCCC
Confidence 68999999766 477889999988888999996 789887
No 47
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=94.39 E-value=0.34 Score=41.37 Aligned_cols=105 Identities=15% Similarity=0.016 Sum_probs=67.4
Q ss_pred EEEEEEc-CCCcchHHHHHHHHHhcCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcccceee
Q 020508 43 GIHVFHC-PDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVV 120 (325)
Q Consensus 43 ~~ltv~g-~DrpGIVa~Vt~~La~~giNI~~l~~~~~~-~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~~~~ 120 (325)
..+++.| +|+||+.++|-+.|+++|+||.-+.|.... ..|.-. +.+.++. .+.+...+.|+++.++++....
T Consensus 17 ~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~--isftv~~--~~~~~a~~~L~~~~~el~~~~v-- 90 (181)
T 3s1t_A 17 AKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTD--ITFTCSR--DVGPAAVEKLDSLRNEIGFSQL-- 90 (181)
T ss_dssp EEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEE--EEEEEET--TTHHHHHHHHHHTHHHHCCSEE--
T ss_pred EEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccE--EEEEEeh--hHHHHHHHHHHHHHHhcCcceE--
Confidence 3445443 699999999999999999999988875432 145444 4444454 3466778888888888876542
Q ss_pred eecCCCCCceEEEEEeCC-c--hHHHHHHHHhhcCCCC
Q 020508 121 RVPDIDPKYKVAVLASKQ-E--HCLVDFLYGWQEGKLP 155 (325)
Q Consensus 121 ~~~~~~~~~ri~v~~Sg~-g--~~l~~Ll~~~~~~~l~ 155 (325)
... ..--+|.+.+.|- + ..+..+..++.+..++
T Consensus 91 ~~~--~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~In 126 (181)
T 3s1t_A 91 LYD--DHIGKVSLIGAGMRSHPGVTATFCEALAAVGVN 126 (181)
T ss_dssp EEE--SCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCC
T ss_pred EEe--CCEEEEEEEecccccCchHHHHHHHHHHHCCCc
Confidence 222 2346888888873 2 2334455555444333
No 48
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=93.87 E-value=0.34 Score=45.28 Aligned_cols=122 Identities=12% Similarity=0.181 Sum_probs=73.2
Q ss_pred CChHHHHHHHHhhhhhhcccceeeeecCCCCCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCC-CchH--
Q 020508 97 WPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP-NSHV-- 173 (325)
Q Consensus 97 ~~~~~L~~~l~~l~~~l~~~~~~~~~~~~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~-~~~~-- 173 (325)
..+.|.-.+|--+-+.+| .-+.+||++++-+ +.....++..+.. ++.++. ++.|+... +..+
T Consensus 134 ~HPtQaLaDl~Ti~e~~g----------~l~gl~va~vGD~-~rva~Sl~~~~~~--~g~~v~--~~~P~~~~~~~~~~~ 198 (315)
T 1pvv_A 134 SHPCQALADYMTIWEKKG----------TIKGVKVVYVGDG-NNVAHSLMIAGTK--LGADVV--VATPEGYEPDEKVIK 198 (315)
T ss_dssp CCHHHHHHHHHHHHHHHS----------CCTTCEEEEESCC-CHHHHHHHHHHHH--TTCEEE--EECCTTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHHhC----------CcCCcEEEEECCC-cchHHHHHHHHHH--CCCEEE--EECCccccCCHHHHH
Confidence 445555555555544443 1135789997765 3333445554332 345643 33343322 2224
Q ss_pred --HHHHHHCCCCEEEecCCCChhHHHHHHHhcCCCEEEEecc-----------------ccccChhHHhhcCCCEEEEcC
Q 020508 174 --IRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARY-----------------MQILSGKFLRSYGKDVINIHH 234 (325)
Q Consensus 174 --~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dliv~~g~-----------------~~il~~~~l~~~~~~~iNiHp 234 (325)
.+.|++.|..+.... ++.+.++++|++..-.| .+.+++++++..+..++-+||
T Consensus 199 ~~~~~a~~~g~~~~~~~--------d~~eav~~aDvvy~~~w~smg~~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mH~ 270 (315)
T 1pvv_A 199 WAEQNAAESGGSFELLH--------DPVKAVKDADVIYTDVWASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHC 270 (315)
T ss_dssp HHHHHHHHHTCEEEEES--------CHHHHTTTCSEEEECCCCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEEC
T ss_pred HHHHHHHHcCCeEEEEe--------CHHHHhCCCCEEEEcceeccCcccchHHHHHHHHhcCCCHHHHhhcCCCcEEECC
Confidence 345558887776443 23455668999998766 477889999888888999996
Q ss_pred CCCCCCCCC
Q 020508 235 GLLPSFKGG 243 (325)
Q Consensus 235 slLP~yRG~ 243 (325)
||.+||-
T Consensus 271 --lP~~Rg~ 277 (315)
T 1pvv_A 271 --LPAHRGE 277 (315)
T ss_dssp --SCCCBTT
T ss_pred --CCCCCCC
Confidence 7888863
No 49
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=93.80 E-value=0.14 Score=42.99 Aligned_cols=61 Identities=23% Similarity=0.119 Sum_probs=44.9
Q ss_pred eEEEEEEcCC---CcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcc
Q 020508 42 HGIHVFHCPD---EVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (325)
Q Consensus 42 ~~~ltv~g~D---rpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~ 115 (325)
-..++++|.+ +||+.+++.+.|+++|+||..+++. .. .+.+.+ + .++..++++.+.+.|.+
T Consensus 103 ~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~ists----e~--~is~vv--~-----~~d~~~av~~Lh~~f~l 166 (167)
T 2re1_A 103 VCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMISTS----EI--KVSVLI--D-----EKYMELATRVLHKAFNL 166 (167)
T ss_dssp EEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEEEC----SS--EEEEEE--E-----GGGHHHHHHHHHHHTTC
T ss_pred EEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEEcc----cC--EEEEEE--e-----HHHHHHHHHHHHHHhcC
Confidence 5689999997 9999999999999999999987641 11 122223 2 25566788877777754
No 50
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=93.44 E-value=0.35 Score=45.40 Aligned_cols=102 Identities=13% Similarity=0.224 Sum_probs=64.3
Q ss_pred CceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCC-CchH----HHHHHHCCCCEEEecCCCChhHHHHHHHh
Q 020508 128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP-NSHV----IRFLERHGIPYHYLCAKENEREEELLELV 202 (325)
Q Consensus 128 ~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~-~~~~----~~~a~~~gIp~~~~~~~~~~~~~~~~~~l 202 (325)
.+||++++-+.......++..+.. ++.++. ++.|+... +..+ .+.|++.|..+.... ++.+.+
T Consensus 167 gl~va~vGD~~~rva~Sl~~~~~~--~G~~v~--~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~--------d~~eav 234 (325)
T 1vlv_A 167 GVKVVFMGDTRNNVATSLMIACAK--MGMNFV--ACGPEELKPRSDVFKRCQEIVKETDGSVSFTS--------NLEEAL 234 (325)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHHH--TTCEEE--EESCGGGCCCHHHHHHHHHHHHHHCCEEEEES--------CHHHHH
T ss_pred CcEEEEECCCCcCcHHHHHHHHHH--CCCEEE--EECCccccCCHHHHHHHHHHHHHcCCeEEEEc--------CHHHHH
Confidence 578999776523333445554432 345643 33343221 2224 345558887776543 134556
Q ss_pred cCCCEEEEecc-----------------ccccChhHHhhc-CCCEEEEcCCCCCCCCCC
Q 020508 203 QNTDFLVLARY-----------------MQILSGKFLRSY-GKDVINIHHGLLPSFKGG 243 (325)
Q Consensus 203 ~~~Dliv~~g~-----------------~~il~~~~l~~~-~~~~iNiHpslLP~yRG~ 243 (325)
+++|++..-.| .+.+++++++.. +..++-+|| ||.+||-
T Consensus 235 ~~aDvvyt~~w~smg~~~~~~~~~~~~~~y~v~~ell~~a~k~dai~mH~--LP~~Rg~ 291 (325)
T 1vlv_A 235 AGADVVYTDVWASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHC--LPAVKGQ 291 (325)
T ss_dssp TTCSEEEECCCC----------CHHHHGGGCBCHHHHHTTCCTTCEEEEC--SCCCBTT
T ss_pred ccCCEEEeccccccccccchHhHHHHHhhcCCCHHHHHhccCCCeEEECC--CCCCCCc
Confidence 68899888666 477889999988 778999996 7899874
No 51
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=93.36 E-value=0.43 Score=44.76 Aligned_cols=101 Identities=19% Similarity=0.319 Sum_probs=62.6
Q ss_pred CCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCC-CCchHH----HHHHHCCCCEEEecCCCChhHHHHHHH
Q 020508 127 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRG-PNSHVI----RFLERHGIPYHYLCAKENEREEELLEL 201 (325)
Q Consensus 127 ~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~-~~~~~~----~~a~~~gIp~~~~~~~~~~~~~~~~~~ 201 (325)
+.+||++++-+ +.....++..+.. ++.++. +++ |+.. ++..+. +.|++.|..+.... ++.+.
T Consensus 156 ~glkva~vGD~-~rva~Sl~~~~~~--~G~~v~-~~~-P~~~~~~~~~~~~~~~~a~~~g~~v~~~~--------d~~ea 222 (323)
T 3gd5_A 156 AGLKLAYVGDG-NNVAHSLLLGCAK--VGMSIA-VAT-PEGFTPDPAVSARASEIAGRTGAEVQILR--------DPFEA 222 (323)
T ss_dssp TTCEEEEESCC-CHHHHHHHHHHHH--HTCEEE-EEC-CTTCCCCHHHHHHHHHHHHHHTCCEEEES--------CHHHH
T ss_pred CCCEEEEECCC-CcHHHHHHHHHHH--cCCEEE-EEC-CCcccCCHHHHHHHHHHHHHcCCeEEEEC--------CHHHH
Confidence 36799998766 3333445544322 345643 333 4322 223333 44566788876543 13455
Q ss_pred hcCCCEEEEecc-----------------ccccChhHHhhcCCCEEEEcCCCCCCCCC
Q 020508 202 VQNTDFLVLARY-----------------MQILSGKFLRSYGKDVINIHHGLLPSFKG 242 (325)
Q Consensus 202 l~~~Dliv~~g~-----------------~~il~~~~l~~~~~~~iNiHpslLP~yRG 242 (325)
++++|++..-.| .+.+.+++++..+..++-+|| ||.+||
T Consensus 223 v~~aDvvyt~~wqs~g~~~~~~~~~~~~~~y~vt~ell~~ak~dai~mHc--lPa~Rg 278 (323)
T 3gd5_A 223 ARGAHILYTDVWTSMGQEAETQHRLQLFEQYQINAALLNCAAAEAIVLHC--LPAHRG 278 (323)
T ss_dssp HTTCSEEEECCCC---------CCHHHHTTCCBCHHHHHTSCTTCEEEEC--SCCCBT
T ss_pred hcCCCEEEEeceecCCCcccchHHHHHhhccCCCHHHHhhcCCCcEEECC--CCCCCC
Confidence 668888887665 346888888888888999998 688887
No 52
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=93.35 E-value=0.55 Score=44.31 Aligned_cols=101 Identities=15% Similarity=0.219 Sum_probs=62.4
Q ss_pred CCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCC-CCchH----HHHHHHCCCCEEEecCCCChhHHHHHHH
Q 020508 127 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRG-PNSHV----IRFLERHGIPYHYLCAKENEREEELLEL 201 (325)
Q Consensus 127 ~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~-~~~~~----~~~a~~~gIp~~~~~~~~~~~~~~~~~~ 201 (325)
+.+||++++-+ +.....++..+.. ++.++. +++ |+.. ++..+ .++|++.|..+.... ++.+.
T Consensus 178 ~glkva~vGD~-~nva~Sl~~~~~~--~G~~v~-~~~-P~~~~~~~~~~~~~~~~a~~~G~~v~~~~--------d~~ea 244 (340)
T 4ep1_A 178 KGIKLAYVGDG-NNVCHSLLLASAK--VGMHMT-VAT-PVGYRPNEEIVKKALAIAKETGAEIEILH--------NPELA 244 (340)
T ss_dssp TTCEEEEESCC-CHHHHHHHHHHHH--HTCEEE-EEC-CTTCCCCHHHHHHHHHHHHHHCCCEEEES--------CHHHH
T ss_pred CCCEEEEECCC-chhHHHHHHHHHH--cCCEEE-EEC-CcccCCCHHHHHHHHHHHHHcCCeEEEEC--------CHHHH
Confidence 35789987755 3233444444321 245543 333 3322 12233 345568888776543 13455
Q ss_pred hcCCCEEEEecc----------------ccccChhHHhhcCCCEEEEcCCCCCCCCC
Q 020508 202 VQNTDFLVLARY----------------MQILSGKFLRSYGKDVINIHHGLLPSFKG 242 (325)
Q Consensus 202 l~~~Dliv~~g~----------------~~il~~~~l~~~~~~~iNiHpslLP~yRG 242 (325)
++++|++..-.| .+.+.+++++..+..++-+|| ||.+||
T Consensus 245 v~~aDVvyt~~w~smg~e~~~~~~~~~~~y~vt~ell~~ak~dai~MHc--LPa~Rg 299 (340)
T 4ep1_A 245 VNEADFIYTDVWMSMGQEGEEEKYTLFQPYQINKELVKHAKQTYHFLHC--LPAHRE 299 (340)
T ss_dssp HTTCSEEEECCC------CHHHHHHHHGGGCBCHHHHTTSCTTCEEEEC--SCCCBT
T ss_pred hCCCCEEEecCccCCCCCchHHHHHHhccccCCHHHHHhcCCCcEEECC--CCCCCC
Confidence 668898888776 357888999888888999998 688887
No 53
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=92.78 E-value=0.13 Score=43.69 Aligned_cols=63 Identities=16% Similarity=0.161 Sum_probs=47.4
Q ss_pred ceEEEEEEcC---CCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhccc
Q 020508 41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (325)
Q Consensus 41 ~~~~ltv~g~---DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~ 116 (325)
.-..++++|. |+||+.+++.+.|++.|+||.-+++. . ..+.+-++ .+++.++++.+-+.|.++
T Consensus 94 ~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~istS-e-------~~Is~vV~-----~~d~~~Av~~Lh~~F~l~ 159 (178)
T 2dtj_A 94 QVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELISTS-E-------IRISVLIR-----EDDLDAAARALHEQFQLG 159 (178)
T ss_dssp CEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEE-T-------TEEEEEEE-----GGGHHHHHHHHHHHHTCC
T ss_pred CeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEEcC-C-------CeEEEEEe-----HHHHHHHHHHHHHHHccC
Confidence 4567899998 89999999999999999999887642 1 12222223 366888888888888765
No 54
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=92.61 E-value=0.24 Score=48.41 Aligned_cols=69 Identities=13% Similarity=0.069 Sum_probs=50.2
Q ss_pred CcceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCChHHHHHHHHhhhh
Q 020508 39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (325)
Q Consensus 39 ~~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~-~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~ 111 (325)
...+|.+.+...|+||+.++|+++|+++|++|..+.|.-.. ..+. +.+.+- .. .....+++++++++.+
T Consensus 356 ~~~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~~~~~~~~--~~~v~~-th-~~~e~~~~~~~~~~~~ 425 (444)
T 3mtj_A 356 VRTAYYLRLRAFDRPGVLADITRILADSSISIDAMVQKEPAEGEEQ--VDIILL-TH-VTLEKNVNAAIAKIEA 425 (444)
T ss_dssp CEEEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC------C--EEEEEE-EC-SEEHHHHHHHHHHHTT
T ss_pred cceeeEEEEEecCcccHHHHHHHHHHhcCCceeEEeecccccCCCC--ceEEEE-ec-cCCHHHHHHHHHHHhc
Confidence 45789999999999999999999999999999999885321 1112 233332 23 3567889999998875
No 55
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=92.07 E-value=0.39 Score=46.55 Aligned_cols=65 Identities=15% Similarity=0.098 Sum_probs=45.7
Q ss_pred ceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhh
Q 020508 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (325)
Q Consensus 41 ~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l 109 (325)
....+++.=.+.||++++|++.|+++|+||.++..... +.+=+..+.+ .+.....+++.++|+++
T Consensus 342 ~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~--~~~~y~~~d~--~~~~~~~~~~~~~l~~~ 406 (416)
T 3k5p_A 342 TGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTD--GEVGYLVMEA--DGVGEASDAVLQEIREI 406 (416)
T ss_dssp SSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEEC--SSCEEEEEEE--CCCHHHHHHHHHHHHTS
T ss_pred CceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCC--CceEEEEEEe--cCCCCCcHHHHHHHHhC
Confidence 46789999999999999999999999999999887543 3344434444 31111235566666554
No 56
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=91.64 E-value=0.4 Score=44.13 Aligned_cols=66 Identities=17% Similarity=0.134 Sum_probs=44.7
Q ss_pred EEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCChHHHHHHHHhhhh
Q 020508 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (325)
Q Consensus 43 ~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~-~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~ 111 (325)
..+.+.-+|+||-.+++=+.++.+|+|+..+.+.=.. ..+.|. +-+++.. ..+...++++|+++..
T Consensus 201 tsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~--FfvD~eg-~~~d~~v~~aL~~L~~ 267 (283)
T 2qmx_A 201 TSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYL--FYADFIG-HREDQNVHNALENLRE 267 (283)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEE--EEEEEES-CTTSHHHHHHHHHHHT
T ss_pred EEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceE--EEEEEec-CCCcHHHHHHHHHHHH
Confidence 3444444799999999999999999999999996321 123333 3333333 3344778888887753
No 57
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=91.63 E-value=0.43 Score=39.95 Aligned_cols=63 Identities=16% Similarity=0.099 Sum_probs=44.3
Q ss_pred ceEEEEEEcCC---CcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhccc
Q 020508 41 THGIHVFHCPD---EVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (325)
Q Consensus 41 ~~~~ltv~g~D---rpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~ 116 (325)
.-..++++|.+ +||+.+++.+.|++.|+||.-+++ +.. .+.+.+ +. ++..+++..+-+.|.++
T Consensus 94 ~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~-----Se~-~is~vv--~~-----~d~~~Av~~Lh~~f~~~ 159 (167)
T 2dt9_A 94 DIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIAT-----SEV-RISVII--PA-----EYAEAALRAVHQAFELD 159 (167)
T ss_dssp SEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEEE-----CSS-EEEEEE--EG-----GGHHHHHHHHHHHTC--
T ss_pred CEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEEc-----cCC-EEEEEE--eH-----HHHHHHHHHHHHHHcCC
Confidence 34568899987 999999999999999999976653 222 333333 33 55777777777777655
No 58
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=91.20 E-value=0.52 Score=44.00 Aligned_cols=68 Identities=16% Similarity=0.198 Sum_probs=46.4
Q ss_pred ceEEEEEEcC-CCcchHHHHHHHHHhcCCeEeEeeeecc-CCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhh
Q 020508 41 THGIHVFHCP-DEVGIVAKLSECIASRGGNILAADVFVP-EKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (325)
Q Consensus 41 ~~~~ltv~g~-DrpGIVa~Vt~~La~~giNI~~l~~~~~-~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~ 111 (325)
.+-.|.+.-+ |+||-.+++=+.|+.+|+|+..+.+.-. ..-+.|. +-+++.. ..+.+.++++|+++..
T Consensus 200 ~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~--FfiD~eg-~~~d~~v~~aL~~L~~ 269 (313)
T 3mwb_A 200 DKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYF--FSIDADG-HATDSRVADALAGLHR 269 (313)
T ss_dssp EEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEE--EEEEEES-CTTSHHHHHHHHHHHH
T ss_pred CeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEE--EEEEEeC-CCCcHHHHHHHHHHHH
Confidence 4555556665 9999999999999999999999999632 1123333 2233333 3445678888887754
No 59
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=91.05 E-value=1.3 Score=41.11 Aligned_cols=159 Identities=16% Similarity=0.176 Sum_probs=87.0
Q ss_pred hHHHHHHHHHhcCCeEeEeeeecc-------CCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcccceeeeecCCCC
Q 020508 55 IVAKLSECIASRGGNILAADVFVP-------EKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDP 127 (325)
Q Consensus 55 IVa~Vt~~La~~giNI~~l~~~~~-------~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~~~ 127 (325)
-+++..++|... ++++-+..... ..++.= .+-.. .+ ...+.|.-.+|--+-+.+|- + .+
T Consensus 80 sl~DTarvls~~-~D~iviR~~~~~~~~~lA~~~~vP--VINag-~~-~~HPtQaLaDl~Ti~e~~g~------l---~~ 145 (307)
T 3tpf_A 80 PVKDTARVIGAM-VDFVMMRVNKHETLLEFARYSKAP--VINAL-SE-LYHPTQVLGDLFTIKEWNKM------Q---NG 145 (307)
T ss_dssp CHHHHHHHHHHH-SSEEEEECSCHHHHHHHHHHCSSC--EEEEE-CS-SCCHHHHHHHHHHHHHTTCC------G---GG
T ss_pred CHHHHHHHHHHh-CCEEEEecCChHHHHHHHHhCCCC--EEeCC-CC-CcCcHHHHHHHHHHHHHhCC------C---CC
Confidence 466666666666 66665555421 000100 11111 12 34555555555555555531 1 11
Q ss_pred CceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCC-CCchHH----HHHHHCCCCEEEecCCCChhHHHHHHHh
Q 020508 128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRG-PNSHVI----RFLERHGIPYHYLCAKENEREEELLELV 202 (325)
Q Consensus 128 ~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~-~~~~~~----~~a~~~gIp~~~~~~~~~~~~~~~~~~l 202 (325)
.+||++++-++ .....++..+.. ++.++. ++.|+.. ++..+. +.|++.|..+.... ++.+.+
T Consensus 146 gl~va~vGD~~-~va~Sl~~~~~~--~G~~v~--~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~--------d~~eav 212 (307)
T 3tpf_A 146 IAKVAFIGDSN-NMCNSWLITAAI--LGFEIS--IAMPKNYKISPEIWEFAMKQALISGAKISLGY--------DKFEAL 212 (307)
T ss_dssp CCEEEEESCSS-HHHHHHHHHHHH--HTCEEE--EECCTTCCCCHHHHHHHHHHHHHHTCEEEEES--------CHHHHH
T ss_pred CCEEEEEcCCC-ccHHHHHHHHHH--cCCEEE--EECCCccCCCHHHHHHHHHHHHHcCCeEEEEc--------CHHHHh
Confidence 57899987643 223444444321 245543 3334322 223343 44558888876543 134456
Q ss_pred cCCCEEEEecc-----------------ccccChhHHhhcCCCEEEEcCCCCCCCCC
Q 020508 203 QNTDFLVLARY-----------------MQILSGKFLRSYGKDVINIHHGLLPSFKG 242 (325)
Q Consensus 203 ~~~Dliv~~g~-----------------~~il~~~~l~~~~~~~iNiHpslLP~yRG 242 (325)
+++|++..-.| .+.+.+++++..+..++-+|| ||.+||
T Consensus 213 ~~aDvvyt~~w~smg~e~~~~~~~~~~~~y~v~~e~l~~a~~~ai~mH~--lPa~Rg 267 (307)
T 3tpf_A 213 KDKDVVITDTWVSMGEENEKERKIKEFEGFMIDEKAMSVANKDAILLHC--LPAYRG 267 (307)
T ss_dssp TTCSEEEECCSSCTTGGGGHHHHHHHTGGGCBCHHHHHHSCTTCEEEEC--SCCCBT
T ss_pred cCCCEEEecCcccCCchhhHHHHHHHhcccccCHHHHHhcCCCcEEECC--CCCCCC
Confidence 68898887664 356888888888888999998 688887
No 60
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=90.78 E-value=2.1 Score=41.24 Aligned_cols=106 Identities=16% Similarity=0.017 Sum_probs=66.2
Q ss_pred EEEEEEc-CCCcchHHHHHHHHHhcCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcccceee
Q 020508 43 GIHVFHC-PDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVV 120 (325)
Q Consensus 43 ~~ltv~g-~DrpGIVa~Vt~~La~~giNI~~l~~~~~~-~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~~~~ 120 (325)
..+++.| +|+||+.++|-+.|+++|+||.-+.|.... ..|...+.+. ++. .+.+...+.|+++..+++... +
T Consensus 265 ~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~--v~~--~~~~~a~~~l~~~~~~~~~~~--v 338 (421)
T 3ab4_A 265 AKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFT--CPR--SDGRRAMEILKKLQVQGNWTN--V 338 (421)
T ss_dssp EEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEE--EET--TTHHHHHHHHHHHHTTTTCSE--E
T ss_pred EEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEE--Eec--hhHHHHHHHHHHHHHHcCCce--E
Confidence 4567774 899999999999999999999998773211 1344444444 454 256667788888888887643 2
Q ss_pred eecCCCCCceEEEEEeCCc---hHHHHHHHHhhcCCCCc
Q 020508 121 RVPDIDPKYKVAVLASKQE---HCLVDFLYGWQEGKLPV 156 (325)
Q Consensus 121 ~~~~~~~~~ri~v~~Sg~g---~~l~~Ll~~~~~~~l~~ 156 (325)
.+. ..--+|.+.+.|-. ..+..++..+.+..++.
T Consensus 339 ~~~--~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI 375 (421)
T 3ab4_A 339 LYD--DQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNI 375 (421)
T ss_dssp EEE--CCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCC
T ss_pred EEe--CCeEEEEEEccCcccCccHHHHHHHHHHHCCCCE
Confidence 332 23456777776521 23344555544444443
No 61
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=90.11 E-value=0.65 Score=42.32 Aligned_cols=58 Identities=10% Similarity=-0.016 Sum_probs=40.7
Q ss_pred CCCcchHHHHHHHHHhcCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCChHHHHHHHHhhhh
Q 020508 50 PDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (325)
Q Consensus 50 ~DrpGIVa~Vt~~La~~giNI~~l~~~~~~-~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~ 111 (325)
+|+||-.+++=+.++.+|+|+..+.+.=.. ..+.|.--++++ . .+.+.++++|+++..
T Consensus 197 ~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e--~--~~d~~v~~aL~~L~~ 255 (267)
T 2qmw_A 197 HDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD--S--AITTDIKKVIAILET 255 (267)
T ss_dssp SCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES--C--CSCHHHHHHHHHHHH
T ss_pred CCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe--c--CCcHHHHHHHHHHHH
Confidence 799999999999999999999999996321 123333224443 2 233678888887753
No 62
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=90.02 E-value=0.97 Score=42.42 Aligned_cols=58 Identities=14% Similarity=0.088 Sum_probs=43.5
Q ss_pred CCcchHHHHHHHHHhcCCeEeEeeeeccCCCC-eEEEEEEEEeCCCCCChHHHHHHHHhhhh
Q 020508 51 DEVGIVAKLSECIASRGGNILAADVFVPEKKN-VFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (325)
Q Consensus 51 DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g-~F~~~~~v~~p~~~~~~~~L~~~l~~l~~ 111 (325)
|+||-.+++=+.|+.+|+|+..+.+. |..+ .+.-.+-+++.. ..+...++++|+++..
T Consensus 217 ~~pGaL~~~L~~Fa~~gINLtkIESR--P~~~~~~~Y~FfiD~eg-~~~d~~v~~AL~~L~~ 275 (329)
T 3luy_A 217 TGPGVLANLLDVFRDAGLNMTSFISR--PIKGRTGTYSFIVTLDA-APWEERFRDALVEIAE 275 (329)
T ss_dssp CSTTHHHHHHHHHHHTTCCEEEEEEE--EETTEEEEEEEEEEESS-CTTSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCcceEEEEee--ECCCCCccEEEEEEEeC-CcCCHHHHHHHHHHHH
Confidence 89999999999999999999999995 3222 222234466665 4556788999888754
No 63
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=89.96 E-value=0.98 Score=45.76 Aligned_cols=91 Identities=16% Similarity=0.107 Sum_probs=62.1
Q ss_pred ceEEEEEEc-CCCcchHHHHHHHHHhcCCeEeEeeeeccCC--CCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcccc
Q 020508 41 THGIHVFHC-PDEVGIVAKLSECIASRGGNILAADVFVPEK--KNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR 117 (325)
Q Consensus 41 ~~~~ltv~g-~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~--~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~ 117 (325)
....+++.+ +|+||+.++|=+.|+++|+|+.=+.|..... +|.+...+.|.+|. .+.+...+.|+++.++++...
T Consensus 443 ~~a~i~i~~~~~~~g~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~--~d~~~a~~~l~~~~~~~~~~~ 520 (600)
T 3l76_A 443 DQAQIAIRHVPDRPGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAE--GDSSQAEAILQPLIKDWLDAA 520 (600)
T ss_dssp SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEH--HHHHHHHHHHHHHTTTSTTCE
T ss_pred CEEEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEeH--HHHHHHHHHHHHHHHhcCCce
Confidence 344566655 8999999999999999999998777764321 35444455565665 346677777888888887554
Q ss_pred eeeeecCCCCCceEEEEEeC
Q 020508 118 SVVRVPDIDPKYKVAVLASK 137 (325)
Q Consensus 118 ~~~~~~~~~~~~ri~v~~Sg 137 (325)
..+. ..--||.+.+.|
T Consensus 521 v~~~----~~~akVSiVG~G 536 (600)
T 3l76_A 521 IVVN----KAIAKVSIVGSG 536 (600)
T ss_dssp EEEE----CCEEEEEEECGG
T ss_pred EEEe----CCeEEEEEECcc
Confidence 3222 234588887765
No 64
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}
Probab=89.37 E-value=4.4 Score=37.89 Aligned_cols=101 Identities=17% Similarity=0.212 Sum_probs=61.7
Q ss_pred CceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCC---CCchH----HHHHHH--CCCCEEEecCCCChhHHHH
Q 020508 128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRG---PNSHV----IRFLER--HGIPYHYLCAKENEREEEL 198 (325)
Q Consensus 128 ~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~---~~~~~----~~~a~~--~gIp~~~~~~~~~~~~~~~ 198 (325)
.+||++++-+.......++..+.. ++.++. +++ |+.. ++..+ .+.|++ .|..+.... ++
T Consensus 161 gl~va~vGD~~~~va~Sl~~~~~~--~G~~v~-~~~-P~~~~~~p~~~~~~~~~~~~~~~~~g~~v~~~~--------d~ 228 (328)
T 3grf_A 161 GIKFAYCGDSMNNVTYDLMRGCAL--LGMECH-VCC-PDHKDFKPIKEVIDECEEIIAKHGTGGSIKIFH--------DC 228 (328)
T ss_dssp GCCEEEESCCSSHHHHHHHHHHHH--HTCEEE-EEC-CSSGGGSCCHHHHHHHHHHHHHHTCCCEEEEES--------SH
T ss_pred CcEEEEeCCCCcchHHHHHHHHHH--cCCEEE-EEC-ChHhhhCCCHHHHHHHHHHHhhccCCCeEEEEc--------CH
Confidence 579999887643344555554322 245543 333 4322 12224 344455 787776543 23
Q ss_pred HHHhcCCCEEEEecc------------------ccccChhHHhhcCCCEEEEcCCCCCCCCC
Q 020508 199 LELVQNTDFLVLARY------------------MQILSGKFLRSYGKDVINIHHGLLPSFKG 242 (325)
Q Consensus 199 ~~~l~~~Dliv~~g~------------------~~il~~~~l~~~~~~~iNiHpslLP~yRG 242 (325)
.+.++++|++..-.| .+.+.+++++..+..++-+|| ||.+||
T Consensus 229 ~eav~~aDvvytd~W~sm~iq~er~~~~~~~~~~y~vt~~~l~~a~~~ai~mH~--lPa~Rg 288 (328)
T 3grf_A 229 KKGCEGVDVVYTDSWMSYHITKEQKEARLKVLTPFQVDDAVMAVTSKRSIFMNC--LPATRG 288 (328)
T ss_dssp HHHHTTCSEEEECCCC--------CCTHHHHHGGGCBCHHHHTTSCTTCEEEEC--SCCCTT
T ss_pred HHHhcCCCEEEecCccccCCcHHHHHHHHHHhcCCCCCHHHHHhcCCCCEEECC--CCCCCC
Confidence 455668899986322 356888888888888999998 688887
No 65
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=88.87 E-value=3.9 Score=38.40 Aligned_cols=158 Identities=13% Similarity=0.133 Sum_probs=90.7
Q ss_pred hHHHHHHHHHhcCCeEeEeeeecc-------CCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcccceeeeecCCCC
Q 020508 55 IVAKLSECIASRGGNILAADVFVP-------EKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDP 127 (325)
Q Consensus 55 IVa~Vt~~La~~giNI~~l~~~~~-------~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~~~ 127 (325)
-+++.+++|... ++++-+..+.. ..++.= .+-.. .. ...+.|.-.+|--+-+.+|- ++ +
T Consensus 89 sl~DTarvLs~~-~D~IviR~~~~~~~~~lA~~s~vP--VINa~-~~-~~HPtQ~LaDl~Ti~e~~g~-----~l----~ 154 (335)
T 1dxh_A 89 SMKDTARVLGRM-YDAIEYRGFKQEIVEELAKFAGVP--VFNGL-TD-EYHPTQMLADVLTMREHSDK-----PL----H 154 (335)
T ss_dssp CHHHHHHHHHHH-CSEEEEECSCHHHHHHHHHHSSSC--EEEEE-CS-SCCHHHHHHHHHHHHHTCSS-----CG----G
T ss_pred cHHHHHHHHHhh-CCEEEEecCChhHHHHHHHhCCCC--EEcCC-CC-CCCcHHHHHHHHHHHHHcCC-----Cc----C
Confidence 466777777776 56666665421 011111 11111 22 45566666666666665541 01 2
Q ss_pred CceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCC-CchH----HHHHHHCCCCEEEecCCCChhHHHHHHHh
Q 020508 128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP-NSHV----IRFLERHGIPYHYLCAKENEREEELLELV 202 (325)
Q Consensus 128 ~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~-~~~~----~~~a~~~gIp~~~~~~~~~~~~~~~~~~l 202 (325)
.+||++++-+.......++..+.. ++.++. ++.|+... +..+ .+.|++.|..+.... ++.+.+
T Consensus 155 gl~va~vGD~~~~va~Sl~~~~~~--~G~~v~--~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~--------d~~eav 222 (335)
T 1dxh_A 155 DISYAYLGDARNNMGNSLLLIGAK--LGMDVR--IAAPKALWPHDEFVAQCKKFAEESGAKLTLTE--------DPKEAV 222 (335)
T ss_dssp GCEEEEESCCSSHHHHHHHHHHHH--TTCEEE--EECCGGGSCCHHHHHHHHHHHHHHTCEEEEES--------CHHHHT
T ss_pred CeEEEEecCCccchHHHHHHHHHH--cCCEEE--EECCcccCCCHHHHHHHHHHHHHcCCeEEEEe--------CHHHHh
Confidence 478999876622333445554432 345644 33343221 2234 345558897776543 234556
Q ss_pred cCCCEEEEecc------------------ccccChhHHhhc-CCCEEEEcCCCCCCC
Q 020508 203 QNTDFLVLARY------------------MQILSGKFLRSY-GKDVINIHHGLLPSF 240 (325)
Q Consensus 203 ~~~Dliv~~g~------------------~~il~~~~l~~~-~~~~iNiHpslLP~y 240 (325)
+++|++..-.| .+.+.+++++.. +..++-+|| ||.+
T Consensus 223 ~~aDvvytd~w~smg~~~e~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHc--LP~~ 277 (335)
T 1dxh_A 223 KGVDFVHTDVWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHC--LPAF 277 (335)
T ss_dssp TTCSEEEECCCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEEC--SCCC
T ss_pred CCCCEEEeCCccccCccchhhHHHHHHhhcceeCHHHHHhccCCCeEEECC--CCCC
Confidence 78999999766 468899999988 778999998 6777
No 66
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=88.67 E-value=2.3 Score=39.89 Aligned_cols=99 Identities=11% Similarity=0.151 Sum_probs=62.1
Q ss_pred CceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCC-CchH----HHHHHHCCCCEEEecCCCChhHHHHHHHh
Q 020508 128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP-NSHV----IRFLERHGIPYHYLCAKENEREEELLELV 202 (325)
Q Consensus 128 ~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~-~~~~----~~~a~~~gIp~~~~~~~~~~~~~~~~~~l 202 (325)
.+||++++-+.......++..+.. ++.++. ++.|+... +..+ .+.|++.|..+.... ++.+.+
T Consensus 155 gl~ia~vGD~~~~va~Sl~~~~~~--~G~~v~--~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~--------d~~eav 222 (333)
T 1duv_G 155 EMTLVYAGDARNNMGNSMLEAAAL--TGLDLR--LVAPQACWPEAALVTECRALAQQNGGNITLTE--------DVAKGV 222 (333)
T ss_dssp GCEEEEESCTTSHHHHHHHHHHHH--HCCEEE--EECCGGGCCCHHHHHHHHHHHHHTTCEEEEES--------CHHHHH
T ss_pred CcEEEEECCCccchHHHHHHHHHH--cCCEEE--EECCcccCCCHHHHHHHHHHHHHcCCeEEEEE--------CHHHHh
Confidence 478999876622333445444321 245543 33343221 2234 445568998776543 234556
Q ss_pred cCCCEEEEecc------------------ccccChhHHhhc-CCCEEEEcCCCCCCC
Q 020508 203 QNTDFLVLARY------------------MQILSGKFLRSY-GKDVINIHHGLLPSF 240 (325)
Q Consensus 203 ~~~Dliv~~g~------------------~~il~~~~l~~~-~~~~iNiHpslLP~y 240 (325)
+++|++..-.| .+.+.+++++.. +..++-+|| ||.+
T Consensus 223 ~~aDvvytd~w~smg~~~~~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHc--LP~~ 277 (333)
T 1duv_G 223 EGADFIYTDVWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHC--LPAF 277 (333)
T ss_dssp TTCSEEEECCSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEEC--SCCC
T ss_pred CCCCEEEeCCccccCccccchHHHHHHhhccccCHHHHHhccCCCcEEECC--CCCC
Confidence 78999999777 468899999988 778999998 6777
No 67
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=87.88 E-value=0.67 Score=39.53 Aligned_cols=64 Identities=19% Similarity=0.206 Sum_probs=49.1
Q ss_pred ceEEEEEEcC---CCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcccc
Q 020508 41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR 117 (325)
Q Consensus 41 ~~~~ltv~g~---DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~ 117 (325)
.-..++++|. ++||+.+++.+.|++.|+||.-+++.- ..+.+-+++ ++..+++..+-+.|.++.
T Consensus 95 ~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~IstSe--------i~Is~vV~~-----~d~~~Av~aLH~~f~l~~ 161 (181)
T 3s1t_A 95 HIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTSE--------IRISVLCRD-----TELDKAVVALHEAFGLGG 161 (181)
T ss_dssp CEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEET--------TEEEEEEEG-----GGHHHHHHHHHHHHTCCC
T ss_pred CEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEEcCC--------CEEEEEEeH-----HHHHHHHHHHHHHHcCCC
Confidence 3568888887 899999999999999999999887531 233443433 667788888888888774
No 68
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=87.68 E-value=0.61 Score=40.66 Aligned_cols=63 Identities=19% Similarity=0.220 Sum_probs=48.9
Q ss_pred eEEEEEEcC---CCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcccc
Q 020508 42 HGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR 117 (325)
Q Consensus 42 ~~~ltv~g~---DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~ 117 (325)
-..++++|. .+||+-+++-+.|++.|+||.-+++. + ..+.+-++ .++..+|+..+-+.|+++.
T Consensus 115 iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIstS-E-------i~IS~vV~-----~~d~~~Av~aLH~~F~L~~ 180 (200)
T 4go7_X 115 IGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTS-E-------IRISVLCR-----DTELDKAVVALHEAFGLGG 180 (200)
T ss_dssp EEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEEEC-S-------SEEEEEEE-----GGGHHHHHHHHHHHHTC--
T ss_pred eeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEEcc-C-------CEEEEEEe-----HHHHHHHHHHHHHHhCCCC
Confidence 457888886 79999999999999999999988752 1 23444444 3778999999999999984
No 69
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}
Probab=87.10 E-value=2.6 Score=39.91 Aligned_cols=121 Identities=18% Similarity=0.252 Sum_probs=72.7
Q ss_pred CCChHHHHHHHHhhhhhhcccceeeeecCCCCCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCC-CchH-
Q 020508 96 KWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP-NSHV- 173 (325)
Q Consensus 96 ~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~-~~~~- 173 (325)
...+.|.-.+|--+-+.+|- -+.+||++++-+.......++..+.. ++.++. ++.|+... ...+
T Consensus 154 ~~HPtQaLaDl~Ti~E~~g~----------l~gl~va~vGD~~~rva~Sl~~~~~~--lG~~v~--~~~P~~l~p~~~~~ 219 (359)
T 2w37_A 154 EWHPTQMLADFMTVKENFGK----------LQGLTLTFMGDGRNNVANSLLVTGAI--LGVNIH--IVAPKALFPTEETQ 219 (359)
T ss_dssp SCCHHHHHHHHHHHHHHHSC----------CTTCEEEEESCTTSHHHHHHHHHHHH--HTCEEE--EECCGGGSCCHHHH
T ss_pred CCCccHHHHHHHHHHHHhCC----------cCCeEEEEECCCccchHHHHHHHHHH--cCCEEE--EECCccccCCHHHH
Confidence 34566666666665555531 13578999776522333445444322 245543 33343221 2234
Q ss_pred ---HHHHHHCCCCEEEecCCCChhHHHHHHHhcCCCEEEEecc----------------ccccChhHHhhcC---CCEEE
Q 020508 174 ---IRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARY----------------MQILSGKFLRSYG---KDVIN 231 (325)
Q Consensus 174 ---~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dliv~~g~----------------~~il~~~~l~~~~---~~~iN 231 (325)
.+.|++.|..+.... ++.+.++++|++..-.| .+.+.+++++..+ ..++-
T Consensus 220 ~~~~~~a~~~G~~v~~~~--------d~~eav~~aDvvytd~w~smg~ee~~er~~~~~~y~v~~ell~~ak~~~~dai~ 291 (359)
T 2w37_A 220 NIAKGFAEKSGAKLVITD--------DLDEGLKGSNVVYTDVWVSMGESNWEERVKELTPYQVNMEAMKKTGTPDDQLIF 291 (359)
T ss_dssp HHHHHHHHHHTCCEEEES--------CHHHHHTTCSEEEECCSCCTTCTTHHHHHHHHGGGCBCHHHHHTTCCCGGGCEE
T ss_pred HHHHHHHHHcCCeEEEEe--------CHHHHhcCCCEEEEcccccccccchHHHHHHhhccccCHHHHHhhCCCCCCEEE
Confidence 345558888776543 23455678999999777 5778889998877 68999
Q ss_pred EcCCCCCCC
Q 020508 232 IHHGLLPSF 240 (325)
Q Consensus 232 iHpslLP~y 240 (325)
+|| ||.+
T Consensus 292 MHc--LP~~ 298 (359)
T 2w37_A 292 MHC--LPAF 298 (359)
T ss_dssp EEC--SCCC
T ss_pred ECC--CCCC
Confidence 998 6776
No 70
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=86.74 E-value=4.6 Score=37.91 Aligned_cols=100 Identities=14% Similarity=0.128 Sum_probs=59.1
Q ss_pred CceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCC-CCchHHH----HHHHCCCCEEEecCCCChhHHHHHHHh
Q 020508 128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRG-PNSHVIR----FLERHGIPYHYLCAKENEREEELLELV 202 (325)
Q Consensus 128 ~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~-~~~~~~~----~a~~~gIp~~~~~~~~~~~~~~~~~~l 202 (325)
.+||++++-+ +.....++..+.. ++.++. +++ |+.. ++..+.+ .|++.|..+..... +. .+
T Consensus 175 glkva~vGD~-~rva~Sl~~~~~~--~G~~v~-~~~-P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d--------~~-av 240 (339)
T 4a8t_A 175 DCKVVFVGDA-TQVCFSLGLITTK--MGMNFV-HFG-PEGFQLNEEHQAKLAKNCEVSGGSFLVTDD--------AS-SV 240 (339)
T ss_dssp GCEEEEESSC-CHHHHHHHHHHHH--TTCEEE-EEC-CTTSSCCHHHHHHHHHHHHHHCCEEEEECC--------GG-GG
T ss_pred CCEEEEECCC-chhHHHHHHHHHH--cCCEEE-EEC-CcccCCCHHHHHHHHHHHHHcCCEEEEECC--------hh-HH
Confidence 5799988766 3333445554432 345643 333 4322 1233433 45677877765431 22 45
Q ss_pred cCCCEEEEecc------------------c-cccChhHHhhcCCCEEEEcCCCCCCCCCC
Q 020508 203 QNTDFLVLARY------------------M-QILSGKFLRSYGKDVINIHHGLLPSFKGG 243 (325)
Q Consensus 203 ~~~Dliv~~g~------------------~-~il~~~~l~~~~~~~iNiHpslLP~yRG~ 243 (325)
+++|++..-.| . +.+.+++++..+..++-+|| ||.+||-
T Consensus 241 ~~aDvvytd~w~smg~~~~~~~er~~~~~~~y~vt~ell~~ak~dai~mHc--LPa~Rg~ 298 (339)
T 4a8t_A 241 EGADFLYTDVWYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHC--LPATRGE 298 (339)
T ss_dssp TTCSEEEECCSSCCTTSCCCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEEC--SCCCBTT
T ss_pred cCCCEEEecCcccCCchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECC--CCCCCCC
Confidence 68898886322 2 66778888877778999998 5777763
No 71
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=86.68 E-value=2.5 Score=37.76 Aligned_cols=78 Identities=14% Similarity=0.107 Sum_probs=45.6
Q ss_pred CceEEEEEeCCc-hHHHHHHHHhhcCCCCceEEEEEeCCCCC---------CCchHHHHHHHCCCCEEEecCCC--ChhH
Q 020508 128 KYKVAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNHDRG---------PNSHVIRFLERHGIPYHYLCAKE--NERE 195 (325)
Q Consensus 128 ~~ri~v~~Sg~g-~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~---------~~~~~~~~a~~~gIp~~~~~~~~--~~~~ 195 (325)
.||++++.||.- |++...+ ..+. +++|+++++..+.. .-..+...|+..|||++.++... ....
T Consensus 4 ~MKvvvl~SGGkDSs~al~~-l~~~---G~eV~~L~~~~~~~~~s~~~h~~~~e~a~~~A~~LGIpl~~v~~~g~~~~e~ 79 (237)
T 3rjz_A 4 LADVAVLYSGGKDSNYALYW-AIKN---RFSVKFLVTMVSENEESYMYHTINANLTDLQARALGIPLVKGFTQGEKEKEV 79 (237)
T ss_dssp CSEEEEECCSSHHHHHHHHH-HHHT---TCEEEEEEEEECC--------CCSSSHHHHHHHHHTCCEEEEEC------CH
T ss_pred CCEEEEEecCcHHHHHHHHH-HHHc---CCeEEEEEEEcCCCCCccccCCccHHHHHHHHHHcCCCEEEEECCCCchHHH
Confidence 379999999863 5544322 2233 47888875433211 11347789999999999877221 1122
Q ss_pred HHHHHHhc--CCCEEE
Q 020508 196 EELLELVQ--NTDFLV 209 (325)
Q Consensus 196 ~~~~~~l~--~~Dliv 209 (325)
+++.+.++ +++.++
T Consensus 80 e~l~~~l~~~~i~~vv 95 (237)
T 3rjz_A 80 EDLKRVLSGLKIQGIV 95 (237)
T ss_dssp HHHHHHHTTSCCSEEE
T ss_pred HHHHHHHHhcCCcEEE
Confidence 45666665 455554
No 72
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=86.65 E-value=4.5 Score=37.47 Aligned_cols=97 Identities=14% Similarity=0.144 Sum_probs=63.9
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCC-CCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCC
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRG-PNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~-~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 205 (325)
.+||++++.+. +.....++..+.. ++.++. ++.|+.. ++..+.+.|++.|..+..... +.+.++++
T Consensus 155 gl~va~vGD~~~~rva~Sl~~~~~~--~G~~v~--~~~P~~~~~~~~~~~~~~~~g~~~~~~~d--------~~eav~~a 222 (308)
T 1ml4_A 155 GLKIGLLGDLKYGRTVHSLAEALTF--YDVELY--LISPELLRMPRHIVEELREKGMKVVETTT--------LEDVIGKL 222 (308)
T ss_dssp SEEEEEESCTTTCHHHHHHHHHGGG--SCEEEE--EECCGGGCCCHHHHHHHHHTTCCEEEESC--------THHHHTTC
T ss_pred CeEEEEeCCCCcCchHHHHHHHHHH--CCCEEE--EECCccccCCHHHHHHHHHcCCeEEEEcC--------HHHHhcCC
Confidence 57899988764 3455666666432 355643 3334332 234478889999988765431 23455688
Q ss_pred CEEEEecc----------------ccccChhHHhhcCCCEEEEcCCC
Q 020508 206 DFLVLARY----------------MQILSGKFLRSYGKDVINIHHGL 236 (325)
Q Consensus 206 Dliv~~g~----------------~~il~~~~l~~~~~~~iNiHpsl 236 (325)
|++..-.| .+-+++++++..+..++-+||.+
T Consensus 223 Dvvyt~~~q~er~~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~lP 269 (308)
T 1ml4_A 223 DVLYVTRIQKERFPDEQEYLKVKGSYQVNLKVLEKAKDELRIMHPLP 269 (308)
T ss_dssp SEEEECCCCGGGSSSHHHHHTTTTCCCBCTTGGGGSCTTCEEECCSC
T ss_pred CEEEECCccccccCCHHHHHHHhcCcccCHHHHhhcCCCCEEECCCC
Confidence 99888665 35678888888877899999765
No 73
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=86.41 E-value=2 Score=39.79 Aligned_cols=96 Identities=18% Similarity=0.225 Sum_probs=60.2
Q ss_pred CCceEEEEEeCC-chHHHHHHHHhhcCCC-CceEEEEEeCCCCC-CCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhc
Q 020508 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKL-PVEITCVISNHDRG-PNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 203 (325)
Q Consensus 127 ~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l-~~~I~~Vvt~~~~~-~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 203 (325)
+.+||++++-+. +.....++..+. .+ +.++. +++ |+.. .+..+.+.|++.|..+..... +.+.++
T Consensus 150 ~glkva~vGD~~~~rva~Sl~~~~~--~~~G~~v~-~~~-P~~~~~~~~~~~~~~~~g~~~~~~~d--------~~eav~ 217 (306)
T 4ekn_B 150 DGIKIAFVGDLKYGRTVHSLVYALS--LFENVEMY-FVS-PKELRLPKDIIEDLKAKNIKFYEKES--------LDDLDD 217 (306)
T ss_dssp TTCEEEEESCTTTCHHHHHHHHHHH--TSSSCEEE-EEC-CGGGCCCHHHHHHHHHTTCCEEEESC--------GGGCCT
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHH--hcCCCEEE-EEC-CcccccCHHHHHHHHHcCCEEEEEcC--------HHHHhc
Confidence 357999988664 334455665543 23 45643 333 4321 245677888899998865441 123345
Q ss_pred CCCEEEEecc----------------ccccChhHHhhcCCCEEEEcCCC
Q 020508 204 NTDFLVLARY----------------MQILSGKFLRSYGKDVINIHHGL 236 (325)
Q Consensus 204 ~~Dliv~~g~----------------~~il~~~~l~~~~~~~iNiHpsl 236 (325)
++|++..-.| .+.+.+++++. ..++-+||.+
T Consensus 218 ~aDvvy~~~~q~er~~~~~e~~~~~~~y~v~~~~l~~--~~ai~mH~lP 264 (306)
T 4ekn_B 218 DIDVLYVTRIQKERFPDPNEYEKVKGSYKIKREYVEG--KKFIIMHPLP 264 (306)
T ss_dssp TCSEEEECCCCGGGCCSHHHHHHHHHHHCBCHHHHTT--CCCEEECCSC
T ss_pred CCCEEEeCCcccccCCCHHHHHHhccCcEECHHHHcC--CCCEEECCCC
Confidence 7898887644 25678888877 4678899976
No 74
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=86.10 E-value=1.2 Score=41.25 Aligned_cols=70 Identities=10% Similarity=0.183 Sum_probs=42.9
Q ss_pred CCceEEEEEeCC-ch-HHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhc-
Q 020508 127 PKYKVAVLASKQ-EH-CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ- 203 (325)
Q Consensus 127 ~~~ri~v~~Sg~-g~-~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~- 203 (325)
+++||+|++.|. |. .....+.. .+ +.++++|+... .....++|+++|+|-.+-+ +.++|.
T Consensus 22 ~mirigiIG~G~ig~~~~~~~~~~--~~--~~~lvav~d~~----~~~a~~~a~~~g~~~~y~d---------~~ell~~ 84 (350)
T 4had_A 22 SMLRFGIISTAKIGRDNVVPAIQD--AE--NCVVTAIASRD----LTRAREMADRFSVPHAFGS---------YEEMLAS 84 (350)
T ss_dssp CCEEEEEESCCHHHHHTHHHHHHH--CS--SEEEEEEECSS----HHHHHHHHHHHTCSEEESS---------HHHHHHC
T ss_pred CccEEEEEcChHHHHHHHHHHHHh--CC--CeEEEEEECCC----HHHHHHHHHHcCCCeeeCC---------HHHHhcC
Confidence 579999999885 32 22222322 12 47888877543 2356889999999954321 223343
Q ss_pred -CCCEEEEecc
Q 020508 204 -NTDFLVLARY 213 (325)
Q Consensus 204 -~~Dliv~~g~ 213 (325)
++|+++++.-
T Consensus 85 ~~iDaV~I~tP 95 (350)
T 4had_A 85 DVIDAVYIPLP 95 (350)
T ss_dssp SSCSEEEECSC
T ss_pred CCCCEEEEeCC
Confidence 6788877653
No 75
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A
Probab=85.57 E-value=2.9 Score=39.72 Aligned_cols=101 Identities=17% Similarity=0.286 Sum_probs=61.1
Q ss_pred CCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCC-C--CchH----HHHHHHCCCCEEEecCCCChhHHHHH
Q 020508 127 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRG-P--NSHV----IRFLERHGIPYHYLCAKENEREEELL 199 (325)
Q Consensus 127 ~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~-~--~~~~----~~~a~~~gIp~~~~~~~~~~~~~~~~ 199 (325)
+.+||++++-+.......++..+.. ++.++. ++.|+.. + +..+ .+.|++.|..+.... ++.
T Consensus 179 ~glkva~vGD~~nnva~Sl~~~~~~--lG~~v~--~~~P~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~--------d~~ 246 (365)
T 4amu_A 179 KNKKIVFIGDYKNNVGVSTMIGAAF--NGMHVV--MCGPDNYKNEIDKNVLAKCIELFKRNGGSLRFST--------DKI 246 (365)
T ss_dssp TTCEEEEESSTTSHHHHHHHHHHHH--TTCEEE--EESCGGGGGGSCHHHHHHHHHHHHHHSCEEEEES--------CHH
T ss_pred CCCEEEEECCCCcchHHHHHHHHHH--cCCEEE--EECCccccCCCcHHHHHHHHHHHHHcCCEEEEEC--------CHH
Confidence 3578998876632233445554432 345543 3334321 1 1223 345677787776543 234
Q ss_pred HHhcCCCEEEEecc------------------ccccChhHHhhcCCCEEEEcCCCCCCCC
Q 020508 200 ELVQNTDFLVLARY------------------MQILSGKFLRSYGKDVINIHHGLLPSFK 241 (325)
Q Consensus 200 ~~l~~~Dliv~~g~------------------~~il~~~~l~~~~~~~iNiHpslLP~yR 241 (325)
+.++++|++..-.| .+.+.+++++..+..++-+|| ||.+|
T Consensus 247 eav~~aDVVytd~W~smg~~~~~~~er~~~~~~y~vt~ell~~a~~dai~MHc--LP~~R 304 (365)
T 4amu_A 247 LAAQDADVIYTDVWVSLGEPFELFDKRIGELKNFQVDMNMIKAAKNDVIFLHC--LPAFH 304 (365)
T ss_dssp HHTTTCSEEEECCSCCTTCCHHHHHHHHHHHTTCCBCHHHHHHSCTTCEEEEC--SCCCC
T ss_pred HHhcCCCEEEecccccCCchhhhHHHHHHHhcccccCHHHHHhcCCCcEEECC--CCCCC
Confidence 55668899887322 356888899888778999998 68888
No 76
>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=85.42 E-value=4.4 Score=37.39 Aligned_cols=42 Identities=19% Similarity=0.272 Sum_probs=32.4
Q ss_pred HHhcCCCEEEEecc-----------------ccccChhHHhhcCCCEEEEcCCCCCCCCCC
Q 020508 200 ELVQNTDFLVLARY-----------------MQILSGKFLRSYGKDVINIHHGLLPSFKGG 243 (325)
Q Consensus 200 ~~l~~~Dliv~~g~-----------------~~il~~~~l~~~~~~~iNiHpslLP~yRG~ 243 (325)
+.++++|++..-.| .+.+++++++..+..++-+|| ||.+||.
T Consensus 209 eav~~aDvvy~~~~~smg~~~~~~~~~~~~~~y~v~~e~l~~a~~~ai~mHp--lP~~Rg~ 267 (301)
T 2ef0_A 209 EAALGAHALYTDVWTSMGQEAEREKRLRDFQGFQVNGELLKLLRPEGVFLHC--LPAHYGE 267 (301)
T ss_dssp HHHTTCSEEEECCCC--------CHHHHHTTTCCBCHHHHTTSCTTCEEEEC--SCCCBTT
T ss_pred HHhcCCCEEEecCcccCCcccchhHHHHHhhccccCHHHHHhcCCCcEEECC--CCCCCCC
Confidence 44557898888555 366788888888778999996 7899873
No 77
>3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A*
Probab=85.18 E-value=1.9 Score=41.03 Aligned_cols=94 Identities=9% Similarity=0.176 Sum_probs=60.5
Q ss_pred ceEEEEEe-CC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCC--CC--h-----hHHH
Q 020508 129 YKVAVLAS-KQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK--EN--E-----REEE 197 (325)
Q Consensus 129 ~ri~v~~S-g~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~--~~--~-----~~~~ 197 (325)
+||++++| |+ |+.--+++... + .++++++.++++ -.-+.+.|++++..+..+... .. . ..+.
T Consensus 4 k~i~ILGsTGSIG~~tldVi~~~--~--~~~vvaL~a~~n---~~~l~~q~~~f~p~~v~v~~~~~~~~~l~~~~~G~~~ 76 (376)
T 3a06_A 4 RTLVILGATGSIGTQTLDVLKKV--K--GIRLIGISFHSN---LELAFKIVKEFNVKNVAITGDVEFEDSSINVWKGSHS 76 (376)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS--C--SEEEEEEEESSC---HHHHHHHHHHHTCCEEEECSSCCCCCSSSEEEESTTH
T ss_pred ceEEEECCCCHHHHHHHHHHHhC--C--CeEEEEEEccCC---HHHHHHHHHHcCCCEEEEccHHHHHHHHHHHccCHHH
Confidence 78999995 65 55555555542 2 489999877653 245788899999988765421 10 0 1133
Q ss_pred HHHHhc--CCCEEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhCC
Q 020508 198 LLELVQ--NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGV 254 (325)
Q Consensus 198 ~~~~l~--~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~ 254 (325)
+.+.+. ++|+++.+ .|-+-|..|...|+..|.
T Consensus 77 l~el~~~~~~D~Vv~A-------------------------ivG~aGL~ptlaAi~aGK 110 (376)
T 3a06_A 77 IEEMLEALKPDITMVA-------------------------VSGFSGLRAVLASLEHSK 110 (376)
T ss_dssp HHHHHHHHCCSEEEEC-------------------------CCSTTHHHHHHHHHHHCS
T ss_pred HHHHhcCCCCCEEEEE-------------------------eeCHHHHHHHHHHHHCCC
Confidence 445554 68888776 455567777777777773
No 78
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=84.85 E-value=6.5 Score=37.14 Aligned_cols=99 Identities=14% Similarity=0.143 Sum_probs=59.2
Q ss_pred CceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCC-CCchHH----HHHHHCCCCEEEecCCCChhHHHHHHHh
Q 020508 128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRG-PNSHVI----RFLERHGIPYHYLCAKENEREEELLELV 202 (325)
Q Consensus 128 ~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~-~~~~~~----~~a~~~gIp~~~~~~~~~~~~~~~~~~l 202 (325)
.+||++++-+ +.....++..+.. ++.++. +++ |+.. ++..+. +.|++.|..+....+ +. .+
T Consensus 153 glkva~vGD~-~rva~Sl~~~~~~--~G~~v~-~~~-P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d--------~~-av 218 (355)
T 4a8p_A 153 DCKVVFVGDA-TQVCFSLGLITTK--MGMNFV-HFG-PEGFQLNEEHQAKLAKNCEVSGGSFLVTDD--------AS-SV 218 (355)
T ss_dssp GCEEEEESCC-CHHHHHHHHHHHH--TTCEEE-EEC-CTTSSCCHHHHHHHHHHHHHHSCEEEEECC--------GG-GG
T ss_pred CCEEEEECCC-chhHHHHHHHHHH--cCCEEE-EEC-CCccCCCHHHHHHHHHHHHHcCCeEEEECC--------HH-HH
Confidence 5799988766 3333445554332 345643 333 4322 223343 345677877765431 22 45
Q ss_pred cCCCEEEEecc------------------c-cccChhHHhhcCCCEEEEcCCCCCCCCC
Q 020508 203 QNTDFLVLARY------------------M-QILSGKFLRSYGKDVINIHHGLLPSFKG 242 (325)
Q Consensus 203 ~~~Dliv~~g~------------------~-~il~~~~l~~~~~~~iNiHpslLP~yRG 242 (325)
+++|++..-.| . +.+.+++++..+..++-+|| ||.+||
T Consensus 219 ~~aDVVytd~w~smgq~~~~~~er~~~~~~~y~vt~ell~~ak~dai~MHc--LPa~Rg 275 (355)
T 4a8p_A 219 EGADFLYTDVWYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHC--LPATRG 275 (355)
T ss_dssp TTCSEEEECCSSEETTEECCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEEC--SCCCBT
T ss_pred cCCCEEEecccccCcchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECC--CCCCCC
Confidence 68898886221 2 67788888888888999998 578876
No 79
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=84.45 E-value=1.4 Score=41.82 Aligned_cols=62 Identities=5% Similarity=0.038 Sum_probs=33.2
Q ss_pred eeecCCCCCceEEEEEeCC-chH-HHHHHHHh-hcCC--CCceEEEEEeCCCCCCCchHHHHHHHCCCCEE
Q 020508 120 VRVPDIDPKYKVAVLASKQ-EHC-LVDFLYGW-QEGK--LPVEITCVISNHDRGPNSHVIRFLERHGIPYH 185 (325)
Q Consensus 120 ~~~~~~~~~~ri~v~~Sg~-g~~-l~~Ll~~~-~~~~--l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~ 185 (325)
+....+++|+||+|++.|. |.. +..+.... .... -+.+|++|+... .....++|+++|+|-.
T Consensus 18 ~~~~~Ms~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~----~~~a~~~a~~~~~~~~ 84 (412)
T 4gqa_A 18 LYFQSMSARLNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQD----QAMAERHAAKLGAEKA 84 (412)
T ss_dssp -------CEEEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSS----HHHHHHHHHHHTCSEE
T ss_pred CccccccccceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCC----HHHHHHHHHHcCCCeE
Confidence 4455677889999999885 332 23332211 0111 136888877533 2456788999999854
No 80
>1zq6_A Otcase, ornithine carbamoyltransferase; alpha/beta two-domain; HET: AOR; 1.80A {Xanthomonas campestris} PDB: 1yh0_A* 1zq2_A 1yh1_A* 1zq8_A* 3kzc_A* 3kzk_A* 3kzm_A* 3kzn_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 2g6a_A* 3l05_A* 2g65_A* 3l02_A* 3m4n_A* 2g6c_A* 3l06_A* 2g68_A* ...
Probab=84.09 E-value=5.9 Score=37.52 Aligned_cols=57 Identities=11% Similarity=0.097 Sum_probs=40.1
Q ss_pred HHHHHCCCCEEEecCCCChhHHHHHHHhcCCCEEEEeccc--------------------cccChhHHhhcCCCEEEEcC
Q 020508 175 RFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYM--------------------QILSGKFLRSYGKDVINIHH 234 (325)
Q Consensus 175 ~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dliv~~g~~--------------------~il~~~~l~~~~~~~iNiHp 234 (325)
+.|++.|..+.... ++.+.++++|++..-.|. +.+.+++++..+ .++-+||
T Consensus 244 ~~a~~~g~~v~~~~--------d~~eav~~aDvVyt~~w~se~~mg~~~~~~~~~~~~~~y~vt~e~l~~a~-~ai~MHc 314 (359)
T 1zq6_A 244 QNVAESGGSLQVSH--------DIDSAYAGADVVYAKSWGALPFFGNWEPEKPIRDQYQHFIVDERKMALTN-NGVFSHC 314 (359)
T ss_dssp HHHHHHSCEEEEEC--------CHHHHHTTCSEEEEECCCCGGGTTCCTTHHHHHGGGGGGSBCHHHHHTSS-SCEEECC
T ss_pred HHHHHcCCeEEEEC--------CHHHHhcCCCEEEECCccccccCCcchhhHHHHHHhcCCCCCHHHHHhCC-CCEEECC
Confidence 44557787776443 134556688998887762 447777787777 8899998
Q ss_pred CCCCCCCC
Q 020508 235 GLLPSFKG 242 (325)
Q Consensus 235 slLP~yRG 242 (325)
||.+||
T Consensus 315 --LP~~Rg 320 (359)
T 1zq6_A 315 --LPLRRN 320 (359)
T ss_dssp --SCCCBT
T ss_pred --CCCCCC
Confidence 688887
No 81
>1zhv_A Hypothetical protein ATU0741; NESG, ATR8, structural genomics, PSI, protein struc initiative; 1.50A {Agrobacterium tumefaciens str} SCOP: d.58.18.8 d.58.18.8
Probab=83.96 E-value=1.6 Score=35.65 Aligned_cols=61 Identities=18% Similarity=0.199 Sum_probs=43.7
Q ss_pred EEEEEcC---CCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcc
Q 020508 44 IHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (325)
Q Consensus 44 ~ltv~g~---DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~ 115 (325)
.+++.|+ |-+|+++++|+.|+++||.|--++++.. --+- +|+ .+.++-.++|.+.+.++..
T Consensus 64 ~i~v~~~l~~~~vGilA~is~pLA~agIsif~iSty~t-------D~Il--Vp~--~~~~~Ai~aL~~~~~~~~~ 127 (134)
T 1zhv_A 64 CFKFQGPFAFDETGIVLSVISPLSTNGIGIFVVSTFDG-------DHLL--VRS--NDLEKTADLLANAGHSLLL 127 (134)
T ss_dssp EEEECSCCCCSSCCHHHHHHHHHHTTTCCCEEEECSSC-------EEEE--EEG--GGHHHHHHHHHHTTCEEEC
T ss_pred EEEEecCCCccHHHHHHHHHHHHHhCCCCeEEEEeccc-------cEEE--EeH--HHHHHHHHHHHHcCceeec
Confidence 7778777 9999999999999999999998888531 1222 354 3456666666666655543
No 82
>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=83.80 E-value=2.1 Score=39.77 Aligned_cols=43 Identities=16% Similarity=0.315 Sum_probs=32.6
Q ss_pred HHHHhcCCCEEEEecc-----------------ccccChhHHhhcCCCEEEEcCCCCCCCCC
Q 020508 198 LLELVQNTDFLVLARY-----------------MQILSGKFLRSYGKDVINIHHGLLPSFKG 242 (325)
Q Consensus 198 ~~~~l~~~Dliv~~g~-----------------~~il~~~~l~~~~~~~iNiHpslLP~yRG 242 (325)
+.+.++++|++..-.| .+.+.+++++..+..++-+|| ||.+||
T Consensus 210 ~~eav~~aDvvyt~~w~smg~e~~~~~r~~~~~~y~v~~~~l~~a~~~ai~mH~--lP~~Rg 269 (309)
T 4f2g_A 210 PNEACKGADLVTTDVWTSMGFEAENEARKRAFADWCVDEEMMSHANSDALFMHC--LPAHRG 269 (309)
T ss_dssp HHHHTTTCSEEEECCC------------CCSGGGGCBCHHHHTTSCTTCEEEEC--SSCCBT
T ss_pred HHHHhcCCCEEEecccccCcchhhHHHHHHHhcCceeCHHHHHhcCCCeEEECC--CCCCCC
Confidence 3455668898876432 367889999888888999998 588887
No 83
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=82.61 E-value=2.1 Score=39.62 Aligned_cols=59 Identities=3% Similarity=0.027 Sum_probs=31.9
Q ss_pred eecCCCCCceEEEEEeCC-chH-HHH---HHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEE
Q 020508 121 RVPDIDPKYKVAVLASKQ-EHC-LVD---FLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYH 185 (325)
Q Consensus 121 ~~~~~~~~~ri~v~~Sg~-g~~-l~~---Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~ 185 (325)
.++.+ +|.||+|++.|. |.. +.. +...+. .....++++|+.... ....++|+++|+|-.
T Consensus 19 ~~~~M-kkirvgiIG~G~ig~~H~~a~~~~~~~~~-~~~~~~lvav~d~~~----~~a~~~a~~~g~~~~ 82 (393)
T 4fb5_A 19 YFQSM-KPLGIGLIGTGYMGKCHALAWNAVKTVFG-DVERPRLVHLAEANA----GLAEARAGEFGFEKA 82 (393)
T ss_dssp ------CCCEEEEECCSHHHHHHHHHHTTHHHHHC-SSCCCEEEEEECC------TTHHHHHHHHTCSEE
T ss_pred cccCC-CCccEEEEcCCHHHHHHHHHHHhhhhhhc-cCCCcEEEEEECCCH----HHHHHHHHHhCCCee
Confidence 45555 468999999885 321 111 211111 112478998876432 346889999999854
No 84
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Probab=82.04 E-value=5.3 Score=37.01 Aligned_cols=118 Identities=14% Similarity=0.157 Sum_probs=68.4
Q ss_pred CChHHHHHHHHhhhhhhcccceeeeecCCCCCceEEEEEeCC-chHHHHHHHHhhcCCC-CceEEEEEeCCCCC-CCchH
Q 020508 97 WPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQ-EHCLVDFLYGWQEGKL-PVEITCVISNHDRG-PNSHV 173 (325)
Q Consensus 97 ~~~~~L~~~l~~l~~~l~~~~~~~~~~~~~~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l-~~~I~~Vvt~~~~~-~~~~~ 173 (325)
..+.|.-.+|--+-+.+| .-+.+||++++.+. +.....++..+. .+ +.++. ++.|+.. ++..+
T Consensus 133 ~HPtQaLaDl~Ti~e~~g----------~l~gl~va~vGD~~~~rva~Sl~~~~~--~~~g~~v~--~~~P~~~~~~~~~ 198 (310)
T 3csu_A 133 QHPTQTLLDLFTIQETQG----------RLDNLHVAMVGDLKYGRTVHSLTQALA--KFDGNRFY--FIAPDALAMPQYI 198 (310)
T ss_dssp CCHHHHHHHHHHHHHHHS----------CSSSCEEEEESCTTTCHHHHHHHHHHH--TSSSCEEE--EECCGGGCCCHHH
T ss_pred CCchHHHHHHHHHHHHhC----------CcCCcEEEEECCCCCCchHHHHHHHHH--hCCCCEEE--EECCcccccCHHH
Confidence 344555555555444443 11347899988764 344455665543 23 45643 3334322 23447
Q ss_pred HHHHHHCCCCEEEecCCCChhHHHHHHHhcCCCEEEEecc---------------ccccChhHHhhcCCCEEEEcCCC
Q 020508 174 IRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARY---------------MQILSGKFLRSYGKDVINIHHGL 236 (325)
Q Consensus 174 ~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dliv~~g~---------------~~il~~~~l~~~~~~~iNiHpsl 236 (325)
.+.|++.|..+..... +.+.++++|++..-.| .+.+.+++++..+..++-+||.+
T Consensus 199 ~~~~~~~g~~~~~~~d--------~~eav~~aDvvyt~~~q~er~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~lP 268 (310)
T 3csu_A 199 LDMLDEKGIAWSLHSS--------IEEVMAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLP 268 (310)
T ss_dssp HHHHHHTTCCEEECSC--------GGGTTTTCSEEEECC-----------------CCBCGGGGTTCCTTCEEECCSC
T ss_pred HHHHHHcCCeEEEEcC--------HHHHhcCCCEEEECCccccccCHHHHHHHhhccCCCHHHHhhcCCCCEEECCCC
Confidence 7888899988764431 1223446677666655 36678888888887899999765
No 85
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=80.56 E-value=2.6 Score=33.48 Aligned_cols=71 Identities=13% Similarity=0.182 Sum_probs=41.5
Q ss_pred CCceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhc--
Q 020508 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-- 203 (325)
Q Consensus 127 ~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~-- 203 (325)
-+.+|+|++.|. |..+...|.. . +++++++-.++ ...+.+++.|+++...+ ..+++.++...
T Consensus 6 ~~~~viIiG~G~~G~~la~~L~~--~---g~~v~vid~~~------~~~~~~~~~g~~~i~gd----~~~~~~l~~a~i~ 70 (140)
T 3fwz_A 6 ICNHALLVGYGRVGSLLGEKLLA--S---DIPLVVIETSR------TRVDELRERGVRAVLGN----AANEEIMQLAHLE 70 (140)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHH--T---TCCEEEEESCH------HHHHHHHHTTCEEEESC----TTSHHHHHHTTGG
T ss_pred CCCCEEEECcCHHHHHHHHHHHH--C---CCCEEEEECCH------HHHHHHHHcCCCEEECC----CCCHHHHHhcCcc
Confidence 456899988775 5555554433 2 35665444332 23555667899987544 12244555433
Q ss_pred CCCEEEEec
Q 020508 204 NTDFLVLAR 212 (325)
Q Consensus 204 ~~Dliv~~g 212 (325)
++|+++++-
T Consensus 71 ~ad~vi~~~ 79 (140)
T 3fwz_A 71 CAKWLILTI 79 (140)
T ss_dssp GCSEEEECC
T ss_pred cCCEEEEEC
Confidence 789888763
No 86
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=79.57 E-value=2.8 Score=38.89 Aligned_cols=69 Identities=20% Similarity=0.176 Sum_probs=40.7
Q ss_pred CCceEEEEEeCC-ch-HHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhc-
Q 020508 127 PKYKVAVLASKQ-EH-CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ- 203 (325)
Q Consensus 127 ~~~ri~v~~Sg~-g~-~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~- 203 (325)
+++||+|++.|. |. .+...+.. .+ +.++++|+... .....++++++|+|.+ -+ +.+++.
T Consensus 26 ~~~rigiIG~G~~g~~~~~~~l~~--~~--~~~l~av~d~~----~~~~~~~a~~~g~~~~-~~---------~~~ll~~ 87 (350)
T 3rc1_A 26 NPIRVGVIGCADIAWRRALPALEA--EP--LTEVTAIASRR----WDRAKRFTERFGGEPV-EG---------YPALLER 87 (350)
T ss_dssp CCEEEEEESCCHHHHHTHHHHHHH--CT--TEEEEEEEESS----HHHHHHHHHHHCSEEE-ES---------HHHHHTC
T ss_pred CceEEEEEcCcHHHHHHHHHHHHh--CC--CeEEEEEEcCC----HHHHHHHHHHcCCCCc-CC---------HHHHhcC
Confidence 468999988875 33 22222222 22 47888877643 2346778899999976 22 223343
Q ss_pred -CCCEEEEecc
Q 020508 204 -NTDFLVLARY 213 (325)
Q Consensus 204 -~~Dliv~~g~ 213 (325)
++|+++++.-
T Consensus 88 ~~~D~V~i~tp 98 (350)
T 3rc1_A 88 DDVDAVYVPLP 98 (350)
T ss_dssp TTCSEEEECCC
T ss_pred CCCCEEEECCC
Confidence 5677776643
No 87
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=79.09 E-value=5.3 Score=36.55 Aligned_cols=73 Identities=10% Similarity=0.156 Sum_probs=41.6
Q ss_pred CCCceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhc-
Q 020508 126 DPKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ- 203 (325)
Q Consensus 126 ~~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~- 203 (325)
.+++||+|++.|. |......+.. +.+ ++++++|+... .....++++++|++..+ . . +.+.+.
T Consensus 6 ~~~~~v~iiG~G~ig~~~~~~l~~-~~~--~~~~vav~d~~----~~~~~~~a~~~g~~~~~-~----~----~~~~l~~ 69 (346)
T 3cea_A 6 RKPLRAAIIGLGRLGERHARHLVN-KIQ--GVKLVAACALD----SNQLEWAKNELGVETTY-T----N----YKDMIDT 69 (346)
T ss_dssp CCCEEEEEECCSTTHHHHHHHHHH-TCS--SEEEEEEECSC----HHHHHHHHHTTCCSEEE-S----C----HHHHHTT
T ss_pred CCcceEEEEcCCHHHHHHHHHHHh-cCC--CcEEEEEecCC----HHHHHHHHHHhCCCccc-C----C----HHHHhcC
Confidence 4678999999876 4433222220 112 47888776533 23456778889986432 2 1 223343
Q ss_pred -CCCEEEEeccc
Q 020508 204 -NTDFLVLARYM 214 (325)
Q Consensus 204 -~~Dliv~~g~~ 214 (325)
++|+++++.-.
T Consensus 70 ~~~D~V~i~tp~ 81 (346)
T 3cea_A 70 ENIDAIFIVAPT 81 (346)
T ss_dssp SCCSEEEECSCG
T ss_pred CCCCEEEEeCCh
Confidence 57888777543
No 88
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}
Probab=78.56 E-value=4.5 Score=37.17 Aligned_cols=74 Identities=20% Similarity=0.180 Sum_probs=41.6
Q ss_pred CceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCCE
Q 020508 128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDF 207 (325)
Q Consensus 128 ~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dl 207 (325)
++||++++.|.-.. ..+..+ . .+.++++|+...+......+.+.++++|++...+. + -+++++. .++|+
T Consensus 2 ~~rvgiiG~G~~~~--~~~~~l-~--~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~ll~~-~~vD~ 70 (337)
T 3ip3_A 2 SLKICVIGSSGHFR--YALEGL-D--EECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYN----N-WWEMLEK-EKPDI 70 (337)
T ss_dssp CEEEEEECSSSCHH--HHHTTC-C--TTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECS----S-HHHHHHH-HCCSE
T ss_pred ceEEEEEccchhHH--HHHHhc-C--CCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccC----C-HHHHhcC-CCCCE
Confidence 58999999764221 333333 2 25899998864431123456677778898543333 1 1233321 16788
Q ss_pred EEEec
Q 020508 208 LVLAR 212 (325)
Q Consensus 208 iv~~g 212 (325)
++++.
T Consensus 71 V~I~t 75 (337)
T 3ip3_A 71 LVINT 75 (337)
T ss_dssp EEECS
T ss_pred EEEeC
Confidence 77764
No 89
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=78.43 E-value=2.5 Score=38.88 Aligned_cols=70 Identities=13% Similarity=0.159 Sum_probs=40.5
Q ss_pred CCceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhc--
Q 020508 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-- 203 (325)
Q Consensus 127 ~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~-- 203 (325)
+++||+|++.|. |......+.. .+ +.++++|+... .....++++++|++++ . .+.+++.
T Consensus 3 ~~~rvgiiG~G~~g~~~~~~l~~--~~--~~~l~av~d~~----~~~~~~~a~~~g~~~~--~--------~~~~~l~~~ 64 (344)
T 3euw_A 3 LTLRIALFGAGRIGHVHAANIAA--NP--DLELVVIADPF----IEGAQRLAEANGAEAV--A--------SPDEVFARD 64 (344)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHH--CT--TEEEEEEECSS----HHHHHHHHHTTTCEEE--S--------SHHHHTTCS
T ss_pred CceEEEEECCcHHHHHHHHHHHh--CC--CcEEEEEECCC----HHHHHHHHHHcCCcee--C--------CHHHHhcCC
Confidence 468999999875 4333222222 22 47888876533 2346777888896543 2 1223444
Q ss_pred CCCEEEEeccc
Q 020508 204 NTDFLVLARYM 214 (325)
Q Consensus 204 ~~Dliv~~g~~ 214 (325)
++|+++++.-.
T Consensus 65 ~~D~V~i~tp~ 75 (344)
T 3euw_A 65 DIDGIVIGSPT 75 (344)
T ss_dssp CCCEEEECSCG
T ss_pred CCCEEEEeCCc
Confidence 57777776543
No 90
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=77.78 E-value=3.4 Score=38.23 Aligned_cols=53 Identities=19% Similarity=0.145 Sum_probs=32.1
Q ss_pred CCCceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEE
Q 020508 126 DPKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYH 185 (325)
Q Consensus 126 ~~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~ 185 (325)
.+++||+|++.|. |......+.. . ..+.++++|+... .....++++++|++++
T Consensus 11 ~~~~rvgiiG~G~~g~~~~~~l~~--~-~~~~~lvav~d~~----~~~~~~~~~~~~~~~~ 64 (354)
T 3q2i_A 11 DRKIRFALVGCGRIANNHFGALEK--H-ADRAELIDVCDID----PAALKAAVERTGARGH 64 (354)
T ss_dssp SSCEEEEEECCSTTHHHHHHHHHH--T-TTTEEEEEEECSS----HHHHHHHHHHHCCEEE
T ss_pred CCcceEEEEcCcHHHHHHHHHHHh--C-CCCeEEEEEEcCC----HHHHHHHHHHcCCcee
Confidence 3579999999885 4433222222 1 1247888876543 2346677888888543
No 91
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=77.41 E-value=3.1 Score=40.28 Aligned_cols=67 Identities=15% Similarity=0.084 Sum_probs=44.5
Q ss_pred eEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeecc-CCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhh
Q 020508 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP-EKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKM 112 (325)
Q Consensus 42 ~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~-~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~ 112 (325)
+..|.+.-+|+||-.+++=+.++.+|+|+..+.+.-. ...+.|. +-+++.. .+.+.++++|+++...
T Consensus 34 KTSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~--FfVD~eh--~~d~~v~~AL~eL~~~ 101 (429)
T 1phz_A 34 AISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYE--FFTYLDK--RTKPVLGSIIKSLRND 101 (429)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEE--EEECBCG--GGHHHHHHHHHHHHHT
T ss_pred eEEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEE--EEEEEee--CCCHHHHHHHHHHHhh
Confidence 3444444589999999999999999999999999632 1223343 3333332 2345588888877544
No 92
>1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A*
Probab=76.94 E-value=8.9 Score=36.66 Aligned_cols=55 Identities=13% Similarity=0.185 Sum_probs=38.4
Q ss_pred CceEEEEEe-CC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEec
Q 020508 128 KYKVAVLAS-KQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 128 ~~ri~v~~S-g~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~ 188 (325)
++||++++| |+ |+...+++....+ ..+++++.++++ -..+.+.|+++++.+..+.
T Consensus 4 m~rI~ILGsTGSIG~~~l~vi~~~p~---~~~v~al~ag~n---i~~l~~~~~~f~~~~v~v~ 60 (388)
T 1r0k_A 4 PRTVTVLGATGSIGHSTLDLIERNLD---RYQVIALTANRN---VKDLADAAKRTNAKRAVIA 60 (388)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTGG---GEEEEEEEESSC---HHHHHHHHHHTTCSEEEES
T ss_pred ceEEEEECCCeEeHHHHHHHHHhCcC---cEEEEEEEcCCC---HHHHHHHHHHcCCcEEEEc
Confidence 579999998 76 6666666654321 267887766653 2356788999999887654
No 93
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=76.08 E-value=3.9 Score=37.49 Aligned_cols=72 Identities=19% Similarity=0.287 Sum_probs=42.5
Q ss_pred CCceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhc--
Q 020508 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-- 203 (325)
Q Consensus 127 ~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~-- 203 (325)
+++||+|++.|. |..+...+.. .+ +.++++|+... .....++++++|+|..+ . ++.+++.
T Consensus 4 ~~~~igiiG~G~~g~~~~~~l~~--~~--~~~l~av~d~~----~~~~~~~~~~~~~~~~~-~--------~~~~ll~~~ 66 (330)
T 3e9m_A 4 DKIRYGIMSTAQIVPRFVAGLRE--SA--QAEVRGIASRR----LENAQKMAKELAIPVAY-G--------SYEELCKDE 66 (330)
T ss_dssp CCEEEEECSCCTTHHHHHHHHHH--SS--SEEEEEEBCSS----SHHHHHHHHHTTCCCCB-S--------SHHHHHHCT
T ss_pred CeEEEEEECchHHHHHHHHHHHh--CC--CcEEEEEEeCC----HHHHHHHHHHcCCCcee-C--------CHHHHhcCC
Confidence 468999999886 4433322222 12 47888776533 24567889999997321 1 1223343
Q ss_pred CCCEEEEecccc
Q 020508 204 NTDFLVLARYMQ 215 (325)
Q Consensus 204 ~~Dliv~~g~~~ 215 (325)
++|+++++.-..
T Consensus 67 ~~D~V~i~tp~~ 78 (330)
T 3e9m_A 67 TIDIIYIPTYNQ 78 (330)
T ss_dssp TCSEEEECCCGG
T ss_pred CCCEEEEcCCCH
Confidence 678888775443
No 94
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=75.92 E-value=6.1 Score=36.56 Aligned_cols=87 Identities=11% Similarity=0.100 Sum_probs=47.3
Q ss_pred CCCceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCC--EEEecCCCChhHHHHHHHh
Q 020508 126 DPKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIP--YHYLCAKENEREEELLELV 202 (325)
Q Consensus 126 ~~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp--~~~~~~~~~~~~~~~~~~l 202 (325)
.+++||++++.|. |..+...+.. .+ +.++++|+... .....++++++|+| ...+. .+.+++
T Consensus 4 ~~~~~vgiiG~G~ig~~~~~~l~~--~~--~~~lv~v~d~~----~~~~~~~a~~~~~~~~~~~~~--------~~~~ll 67 (362)
T 1ydw_A 4 ETQIRIGVMGCADIARKVSRAIHL--AP--NATISGVASRS----LEKAKAFATANNYPESTKIHG--------SYESLL 67 (362)
T ss_dssp --CEEEEEESCCTTHHHHHHHHHH--CT--TEEEEEEECSS----HHHHHHHHHHTTCCTTCEEES--------SHHHHH
T ss_pred CCceEEEEECchHHHHHHHHHHhh--CC--CcEEEEEEcCC----HHHHHHHHHHhCCCCCCeeeC--------CHHHHh
Confidence 4578999999886 4333222222 22 47888776543 23467789999974 22222 122344
Q ss_pred c--CCCEEEEeccccccChhHHhhcCCC
Q 020508 203 Q--NTDFLVLARYMQILSGKFLRSYGKD 228 (325)
Q Consensus 203 ~--~~Dliv~~g~~~il~~~~l~~~~~~ 228 (325)
. ++|+++++.-...-.+-.....+.|
T Consensus 68 ~~~~~D~V~i~tp~~~h~~~~~~al~aG 95 (362)
T 1ydw_A 68 EDPEIDALYVPLPTSLHVEWAIKAAEKG 95 (362)
T ss_dssp HCTTCCEEEECCCGGGHHHHHHHHHTTT
T ss_pred cCCCCCEEEEcCChHHHHHHHHHHHHCC
Confidence 3 6899998864443333333343333
No 95
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=75.05 E-value=7.2 Score=36.29 Aligned_cols=70 Identities=10% Similarity=0.093 Sum_probs=40.7
Q ss_pred CCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhc--C
Q 020508 127 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--N 204 (325)
Q Consensus 127 ~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~--~ 204 (325)
+|+||+|++.|..+. ..++..++.+ +.++++|+... .....++|+++|++-.+-+ +.++|. +
T Consensus 25 ~~irvgiiG~G~~~~-~~~~~~~~~~--~~~lvav~d~~----~~~a~~~a~~~~~~~~~~~---------~~~ll~~~~ 88 (361)
T 3u3x_A 25 DELRFAAVGLNHNHI-YGQVNCLLRA--GARLAGFHEKD----DALAAEFSAVYADARRIAT---------AEEILEDEN 88 (361)
T ss_dssp -CCEEEEECCCSTTH-HHHHHHHHHT--TCEEEEEECSC----HHHHHHHHHHSSSCCEESC---------HHHHHTCTT
T ss_pred cCcEEEEECcCHHHH-HHHHHHhhcC--CcEEEEEEcCC----HHHHHHHHHHcCCCcccCC---------HHHHhcCCC
Confidence 468999999986542 1122222222 47888887643 2346788899986543211 223343 5
Q ss_pred CCEEEEec
Q 020508 205 TDFLVLAR 212 (325)
Q Consensus 205 ~Dliv~~g 212 (325)
+|+++++.
T Consensus 89 vD~V~I~t 96 (361)
T 3u3x_A 89 IGLIVSAA 96 (361)
T ss_dssp CCEEEECC
T ss_pred CCEEEEeC
Confidence 77777664
No 96
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=75.05 E-value=4 Score=37.38 Aligned_cols=50 Identities=16% Similarity=0.198 Sum_probs=27.9
Q ss_pred CCceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCE
Q 020508 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPY 184 (325)
Q Consensus 127 ~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~ 184 (325)
+++||+|++.|. |..+...+.. .+ +.++++|+.... ....++++++|+|.
T Consensus 4 ~~~rigiiG~G~ig~~~~~~l~~--~~--~~~~~av~d~~~----~~~~~~a~~~~~~~ 54 (329)
T 3evn_A 4 SKVRYGVVSTAKVAPRFIEGVRL--AG--NGEVVAVSSRTL----ESAQAFANKYHLPK 54 (329)
T ss_dssp -CEEEEEEBCCTTHHHHHHHHHH--HC--SEEEEEEECSCS----STTCC---CCCCSC
T ss_pred CceEEEEEechHHHHHHHHHHHh--CC--CcEEEEEEcCCH----HHHHHHHHHcCCCc
Confidence 468999999986 4433222222 22 478888875432 22456778888873
No 97
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=74.71 E-value=7.9 Score=35.54 Aligned_cols=70 Identities=11% Similarity=0.110 Sum_probs=39.2
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhc--C
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--N 204 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~--~ 204 (325)
++||+|++.|. |.. .+..+.....+.++++|+... .....++++++|++...+.+ +.++++ +
T Consensus 2 ~~rigiIG~G~~g~~---~~~~l~~~~~~~~l~av~d~~----~~~~~~~~~~~g~~~~~~~~--------~~~ll~~~~ 66 (344)
T 3mz0_A 2 SLRIGVIGTGAIGKE---HINRITNKLSGAEIVAVTDVN----QEAAQKVVEQYQLNATVYPN--------DDSLLADEN 66 (344)
T ss_dssp CEEEEEECCSHHHHH---HHHHHHHTCSSEEEEEEECSS----HHHHHHHHHHTTCCCEEESS--------HHHHHHCTT
T ss_pred eEEEEEECccHHHHH---HHHHHHhhCCCcEEEEEEcCC----HHHHHHHHHHhCCCCeeeCC--------HHHHhcCCC
Confidence 57999998875 332 233333111257888876533 23567788999974433331 222332 4
Q ss_pred CCEEEEec
Q 020508 205 TDFLVLAR 212 (325)
Q Consensus 205 ~Dliv~~g 212 (325)
+|+++++.
T Consensus 67 ~D~V~i~t 74 (344)
T 3mz0_A 67 VDAVLVTS 74 (344)
T ss_dssp CCEEEECS
T ss_pred CCEEEECC
Confidence 67776654
No 98
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=74.32 E-value=2.2 Score=39.51 Aligned_cols=70 Identities=9% Similarity=0.106 Sum_probs=41.8
Q ss_pred CCceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhc--
Q 020508 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-- 203 (325)
Q Consensus 127 ~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~-- 203 (325)
+++||+|++.|. |. ..+..++.. .+.++++|+... .....++++++|++.+ . .+.+++.
T Consensus 4 ~~~~vgiiG~G~~g~---~~~~~l~~~-~~~~lvav~d~~----~~~~~~~~~~~g~~~~--~--------~~~~~l~~~ 65 (354)
T 3db2_A 4 NPVGVAAIGLGRWAY---VMADAYTKS-EKLKLVTCYSRT----EDKREKFGKRYNCAGD--A--------TMEALLARE 65 (354)
T ss_dssp CCEEEEEECCSHHHH---HHHHHHTTC-SSEEEEEEECSS----HHHHHHHHHHHTCCCC--S--------SHHHHHHCS
T ss_pred CcceEEEEccCHHHH---HHHHHHHhC-CCcEEEEEECCC----HHHHHHHHHHcCCCCc--C--------CHHHHhcCC
Confidence 568999998875 32 333433321 157888876533 2346778888899863 2 1223342
Q ss_pred CCCEEEEeccc
Q 020508 204 NTDFLVLARYM 214 (325)
Q Consensus 204 ~~Dliv~~g~~ 214 (325)
++|+++++.-.
T Consensus 66 ~~D~V~i~tp~ 76 (354)
T 3db2_A 66 DVEMVIITVPN 76 (354)
T ss_dssp SCCEEEECSCT
T ss_pred CCCEEEEeCCh
Confidence 67888877543
No 99
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=74.20 E-value=3.7 Score=37.61 Aligned_cols=70 Identities=17% Similarity=0.230 Sum_probs=41.2
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhc-CCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhc--
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQE-GKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-- 203 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~-~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~-- 203 (325)
++||+|++.|. |.. .+..++. +...+++++|+... .....++|+++|+|..+ . .+.+++.
T Consensus 2 ~~rigiiG~G~ig~~---~~~~l~~~~~~~~~l~av~d~~----~~~a~~~a~~~~~~~~~-~--------~~~~ll~~~ 65 (334)
T 3ohs_X 2 ALRWGIVSVGLISSD---FTAVLQTLPRSEHQVVAVAARD----LSRAKEFAQKHDIPKAY-G--------SYEELAKDP 65 (334)
T ss_dssp CEEEEEECCSHHHHH---HHHHHTTSCTTTEEEEEEECSS----HHHHHHHHHHHTCSCEE-S--------SHHHHHHCT
T ss_pred ccEEEEECchHHHHH---HHHHHHhCCCCCeEEEEEEcCC----HHHHHHHHHHcCCCccc-C--------CHHHHhcCC
Confidence 57999988775 333 3333322 22236888877543 23567889999998432 2 1223343
Q ss_pred CCCEEEEecc
Q 020508 204 NTDFLVLARY 213 (325)
Q Consensus 204 ~~Dliv~~g~ 213 (325)
++|+++++.-
T Consensus 66 ~vD~V~i~tp 75 (334)
T 3ohs_X 66 NVEVAYVGTQ 75 (334)
T ss_dssp TCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 6788887653
No 100
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=74.17 E-value=3.2 Score=39.08 Aligned_cols=70 Identities=14% Similarity=0.161 Sum_probs=40.4
Q ss_pred CceEEEEEeC-C-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCC
Q 020508 128 KYKVAVLASK-Q-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (325)
Q Consensus 128 ~~ri~v~~Sg-~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 205 (325)
++||+|++.| . |......+.. .+ +.++++|+... .....++++++|+|++ . .-+++++. .++
T Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~--~~--~~~l~av~d~~----~~~~~~~a~~~g~~~~--~-----~~~ell~~-~~v 65 (387)
T 3moi_A 2 KIRFGICGLGFAGSVLMAPAMRH--HP--DAQIVAACDPN----EDVRERFGKEYGIPVF--A-----TLAEMMQH-VQM 65 (387)
T ss_dssp CEEEEEECCSHHHHTTHHHHHHH--CT--TEEEEEEECSC----HHHHHHHHHHHTCCEE--S-----SHHHHHHH-SCC
T ss_pred ceEEEEEeCCHHHHHHHHHHHHh--CC--CeEEEEEEeCC----HHHHHHHHHHcCCCeE--C-----CHHHHHcC-CCC
Confidence 6899999888 3 2222222222 22 47888877543 2345678889999964 2 11223221 157
Q ss_pred CEEEEecc
Q 020508 206 DFLVLARY 213 (325)
Q Consensus 206 Dliv~~g~ 213 (325)
|+++++.-
T Consensus 66 D~V~i~tp 73 (387)
T 3moi_A 66 DAVYIASP 73 (387)
T ss_dssp SEEEECSC
T ss_pred CEEEEcCC
Confidence 88887654
No 101
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=73.80 E-value=12 Score=32.67 Aligned_cols=98 Identities=10% Similarity=0.062 Sum_probs=55.7
Q ss_pred CCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCC-CCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhc--
Q 020508 127 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDR-GPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-- 203 (325)
Q Consensus 127 ~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~-~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~-- 203 (325)
.+.|+++++.|+ .-+.|+........+.++++++-..++ ..+. +.-.|+|++..+ ++.+.++
T Consensus 83 ~~~~V~IvGaG~--lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~-----~~i~GvpV~~~~--------dL~~~v~~~ 147 (212)
T 3keo_A 83 STTNVMLVGCGN--IGRALLHYRFHDRNKMQISMAFDLDSNDLVGK-----TTEDGIPVYGIS--------TINDHLIDS 147 (212)
T ss_dssp SCEEEEEECCSH--HHHHHTTCCCCTTSSEEEEEEEECTTSTTTTC-----BCTTCCBEEEGG--------GHHHHC-CC
T ss_pred CCCEEEEECcCH--HHHHHHHhhhcccCCeEEEEEEeCCchhccCc-----eeECCeEEeCHH--------HHHHHHHHc
Confidence 467888876654 334455442223346899999965442 1111 012689998432 3556665
Q ss_pred CCCEEEEeccc---cccChhHHhhcCCCEEEEcCCCCCC
Q 020508 204 NTDFLVLARYM---QILSGKFLRSYGKDVINIHHGLLPS 239 (325)
Q Consensus 204 ~~Dliv~~g~~---~il~~~~l~~~~~~~iNiHpslLP~ 239 (325)
++|.++++-=. +-+-+.+.+.-=.+++|+-|--|--
T Consensus 148 ~Id~vIIAvPs~~aq~v~d~lv~~GIk~I~nFap~~l~v 186 (212)
T 3keo_A 148 DIETAILTVPSTEAQEVADILVKAGIKGILSFSPVHLTL 186 (212)
T ss_dssp SCCEEEECSCGGGHHHHHHHHHHHTCCEEEECSSSCCCC
T ss_pred CCCEEEEecCchhHHHHHHHHHHcCCCEEEEcCCcccCC
Confidence 79999887421 1122223333345799999987743
No 102
>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A
Probab=73.72 E-value=7.6 Score=37.87 Aligned_cols=53 Identities=8% Similarity=0.079 Sum_probs=30.4
Q ss_pred CCceEEEEEeCC--chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCC
Q 020508 127 PKYKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIP 183 (325)
Q Consensus 127 ~~~ri~v~~Sg~--g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp 183 (325)
+++||+|++.|. |.--...+..++.-..+.++++|+... .....++|+++|+|
T Consensus 38 ~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~----~~~a~~~a~~~g~~ 92 (479)
T 2nvw_A 38 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPT----LKSSLQTIEQLQLK 92 (479)
T ss_dssp CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSC----HHHHHHHHHHTTCT
T ss_pred CcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCC----HHHHHHHHHHcCCC
Confidence 468999999832 322222222222210147888876533 23467788999997
No 103
>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}
Probab=73.52 E-value=4.1 Score=37.58 Aligned_cols=55 Identities=5% Similarity=0.017 Sum_probs=31.8
Q ss_pred CceEEEEEeCC-chH-HHHHHHH--hhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEE
Q 020508 128 KYKVAVLASKQ-EHC-LVDFLYG--WQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHY 186 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~-l~~Ll~~--~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~ 186 (325)
|.||+|++.|. |.. +..+... ...-....+|++|+... .....++|+++|+|..+
T Consensus 6 klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~----~~~a~~~a~~~g~~~~~ 64 (390)
T 4h3v_A 6 NLGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRD----AEAVRAAAGKLGWSTTE 64 (390)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSS----HHHHHHHHHHHTCSEEE
T ss_pred cCcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCC----HHHHHHHHHHcCCCccc
Confidence 57999998775 322 2222221 11111235788876533 23567889999998653
No 104
>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*
Probab=73.48 E-value=12 Score=35.31 Aligned_cols=101 Identities=18% Similarity=0.258 Sum_probs=55.6
Q ss_pred CceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCC-CCch----HHHHHHHCCCCEEEecCCCChhHHHHHHHh
Q 020508 128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRG-PNSH----VIRFLERHGIPYHYLCAKENEREEELLELV 202 (325)
Q Consensus 128 ~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~-~~~~----~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l 202 (325)
.+||++++-+.......++..+.. ++.++. +++ |+.. ++.. +.++|.+.|..+.... ++.+.+
T Consensus 181 gl~ia~vGD~~~~va~S~~~~~~~--~g~~v~-~~~-P~~~~p~~~~~~~~~~~~~~~g~~v~~~~--------d~~eav 248 (358)
T 4h31_A 181 DIQFAYLGDARNNVGNSLMVGAAK--MGMDIR-LVG-PQAYWPDEELVAACQAIAKQTGGKITLTE--------NVAEGV 248 (358)
T ss_dssp GCEEEEESCTTSHHHHHHHHHHHH--HTCEEE-EES-CGGGSCCHHHHHHHHHHHHHHTCEEEEES--------CHHHHH
T ss_pred ceEEEecCCCCcccchHHHHHHHh--cCceEE-EeC-CcccCCCHHHHHHHHHHHHHcCCcceecc--------CHHHHh
Confidence 467887775533333344443321 245543 233 3221 1222 3455667777776543 134456
Q ss_pred cCCCEEEEecc------------------ccccChhHHhhc-CCCEEEEcCCCCCCCCC
Q 020508 203 QNTDFLVLARY------------------MQILSGKFLRSY-GKDVINIHHGLLPSFKG 242 (325)
Q Consensus 203 ~~~Dliv~~g~------------------~~il~~~~l~~~-~~~~iNiHpslLP~yRG 242 (325)
+++|++..-.| .+-+..++++.. +..++-+|| ||+++.
T Consensus 249 ~~aDvvyt~~w~s~~~~~~~~~~~~~~~~~y~v~~~~l~~~ak~~~i~mH~--LP~~~n 305 (358)
T 4h31_A 249 QGCDFLYTDVWVSMGESPEAWDERVALMKPYQVNMNVLKQTGNPNVKFMHC--LPAFHN 305 (358)
T ss_dssp TTCSEEEECCSSCTTSCTTHHHHHHHHHGGGCBCHHHHHHTTCTTCEEEEC--SCCCCS
T ss_pred ccCcEEEEEEEEEcccCchhHHHHHHHHhCcccCHHHHHhcCCCCcEEECC--CCCCCC
Confidence 67898876544 235677777653 456888998 788764
No 105
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=73.30 E-value=8.9 Score=37.41 Aligned_cols=35 Identities=9% Similarity=0.108 Sum_probs=31.0
Q ss_pred ceEEEEEEc---CCCcchHHHHHHHHHhcCCeEeEeee
Q 020508 41 THGIHVFHC---PDEVGIVAKLSECIASRGGNILAADV 75 (325)
Q Consensus 41 ~~~~ltv~g---~DrpGIVa~Vt~~La~~giNI~~l~~ 75 (325)
.-..+++.| +++||+.+++-+.|+++|+||.-++|
T Consensus 317 ~~a~Isv~g~~m~~~~G~~a~if~~La~~~InV~~IsQ 354 (473)
T 3c1m_A 317 NVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQ 354 (473)
T ss_dssp EEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEEe
Confidence 445788988 68899999999999999999999887
No 106
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=73.09 E-value=2.7 Score=38.05 Aligned_cols=69 Identities=12% Similarity=0.089 Sum_probs=39.8
Q ss_pred CceEEEEEeCC-chH-HHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCC
Q 020508 128 KYKVAVLASKQ-EHC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~-l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 205 (325)
++||+|++.|. |.. +...+ ... .+.++++|+... .....++++++|++.+ . .-++++ .++
T Consensus 6 ~~~igiIG~G~~g~~~~~~~l---~~~-~~~~l~av~d~~----~~~~~~~a~~~~~~~~--~-----~~~~ll---~~~ 67 (308)
T 3uuw_A 6 NIKMGMIGLGSIAQKAYLPIL---TKS-ERFEFVGAFTPN----KVKREKICSDYRIMPF--D-----SIESLA---KKC 67 (308)
T ss_dssp CCEEEEECCSHHHHHHTHHHH---TSC-SSSEEEEEECSC----HHHHHHHHHHHTCCBC--S-----CHHHHH---TTC
T ss_pred cCcEEEEecCHHHHHHHHHHH---HhC-CCeEEEEEECCC----HHHHHHHHHHcCCCCc--C-----CHHHHH---hcC
Confidence 58999998875 332 22222 221 247888877543 2346778888999862 2 112233 267
Q ss_pred CEEEEeccc
Q 020508 206 DFLVLARYM 214 (325)
Q Consensus 206 Dliv~~g~~ 214 (325)
|+++++.-.
T Consensus 68 D~V~i~tp~ 76 (308)
T 3uuw_A 68 DCIFLHSST 76 (308)
T ss_dssp SEEEECCCG
T ss_pred CEEEEeCCc
Confidence 777766543
No 107
>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}
Probab=71.99 E-value=34 Score=32.10 Aligned_cols=130 Identities=13% Similarity=0.150 Sum_probs=72.8
Q ss_pred CCChHHHHHHHHhhhhhhccc---ceeeeecC-CCCCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCC-CC
Q 020508 96 KWPREQMDEDFFKLSKMFNAM---RSVVRVPD-IDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRG-PN 170 (325)
Q Consensus 96 ~~~~~~L~~~l~~l~~~l~~~---~~~~~~~~-~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~-~~ 170 (325)
...+.|.-.+|--+-+.+|-- ++. ..+. .-+.+||++++-+. .....++..+.. ++.++. +++ |+.. .+
T Consensus 153 ~~HPtQaLaDl~TI~E~~G~~~~~~~~-~~~~~~l~glkva~vGD~~-nva~Sl~~~l~~--lG~~v~-~~~-P~~~~~~ 226 (353)
T 3sds_A 153 TFHPLQAIADFLTIHESFASQSATHGT-HPSSLGLEGLKIAWVGDAN-NVLFDLAIAATK--MGVNVA-VAT-PRGYEIP 226 (353)
T ss_dssp SCCHHHHHHHHHHHHHHTC---------CTTCCSCTTCEEEEESCCC-HHHHHHHHHHHH--TTCEEE-EEC-CTTCCCC
T ss_pred CCCcHHHHHHHHHHHHHhCCCcccccc-cccccccCCCEEEEECCCc-hHHHHHHHHHHH--cCCEEE-EEC-CcccCCC
Confidence 345666556665555555421 000 0000 01468999987654 334455554432 345643 333 4332 24
Q ss_pred chHHHHHHH------CCCCEEEecCCCChhHHHHHHHhcCCCEEEEecc-----------------ccccChhHHhh--c
Q 020508 171 SHVIRFLER------HGIPYHYLCAKENEREEELLELVQNTDFLVLARY-----------------MQILSGKFLRS--Y 225 (325)
Q Consensus 171 ~~~~~~a~~------~gIp~~~~~~~~~~~~~~~~~~l~~~Dliv~~g~-----------------~~il~~~~l~~--~ 225 (325)
..+.+.|++ .|..+.... ++.+.++++|++..-.| .+.+.+++++. .
T Consensus 227 ~~i~~~~~~~a~~~~~g~~~~~~~--------d~~eav~~aDVvytd~w~smg~E~~~~~r~~~~~~y~vt~ell~~~~a 298 (353)
T 3sds_A 227 SHIVELIQKAREGVQSPGNLTQTT--------VPEVAVKDADVIVTDTWISMGQETEKIKRLEAFKDFKVTSELAKRGGA 298 (353)
T ss_dssp HHHHHHHHHHHTTCSSCCCEEEES--------CHHHHTTTCSEEEECCC--------CHHHHHHTTTCCBCHHHHHHHTC
T ss_pred HHHHHHHHHhhhhccCCCeEEEEC--------CHHHHhcCCCEEEeCCccCCchhhHHHHHHHHhhCceecHHHHhhccc
Confidence 456666654 366765443 23456678999987433 25789999988 6
Q ss_pred CCCEEEEcCCCCCCCC
Q 020508 226 GKDVINIHHGLLPSFK 241 (325)
Q Consensus 226 ~~~~iNiHpslLP~yR 241 (325)
+..++-+||. |++|
T Consensus 299 k~~ai~MHcL--P~~~ 312 (353)
T 3sds_A 299 KENWKFMHCL--PRHP 312 (353)
T ss_dssp CTTCEEEECS--CCCT
T ss_pred CCCcEEECCC--CCCC
Confidence 7789999996 6654
No 108
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=71.61 E-value=14 Score=35.79 Aligned_cols=81 Identities=14% Similarity=0.081 Sum_probs=49.9
Q ss_pred EEEEEEc---CCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChH-HHHHHHHhhhhhhcccce
Q 020508 43 GIHVFHC---PDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPRE-QMDEDFFKLSKMFNAMRS 118 (325)
Q Consensus 43 ~~ltv~g---~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~-~L~~~l~~l~~~l~~~~~ 118 (325)
..+++.| +|.||+.++|-+.|+++|+||.-+.+.. -. +.+.++.. +.+ .+++.++++.++++.+..
T Consensus 299 ~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i~~~~------~~--is~~V~~~--d~~~~~~~~~~el~~~~~~~~v 368 (446)
T 3tvi_A 299 TVIAIEKALLNSEVGFCRKILSILEMYGVSFEHMPSGV------DS--VSLVIEDC--KLDGKCDKIIEEIKKQCNPDSI 368 (446)
T ss_dssp EEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEBCEET------TE--EEEEEEHH--HHTTTHHHHHHHHHHHSCCSEE
T ss_pred EEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEEecCC------CE--EEEEEecc--hHHHHHHHHHHHHHHhcCCCcE
Confidence 3578887 5999999999999999999998776531 12 23333431 122 345556666666654432
Q ss_pred eeeecCCCCCceEEEEEeC
Q 020508 119 VVRVPDIDPKYKVAVLASK 137 (325)
Q Consensus 119 ~~~~~~~~~~~ri~v~~Sg 137 (325)
.+. . .--+|.+.+.|
T Consensus 369 ~v~--~--~vA~VSvVG~g 383 (446)
T 3tvi_A 369 EIH--P--NMALVATVGTG 383 (446)
T ss_dssp EEE--E--EEEEEEEECGG
T ss_pred EEe--C--CeEEEEEECCC
Confidence 221 1 23467776655
No 109
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=71.43 E-value=5.9 Score=38.01 Aligned_cols=62 Identities=16% Similarity=0.159 Sum_probs=45.1
Q ss_pred eEEEEEEcC---CCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhccc
Q 020508 42 HGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (325)
Q Consensus 42 ~~~ltv~g~---DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~ 116 (325)
-..++++|. ++||+.+++-+.|++.|+||.-+++. + ..+.+-++. ++..+++..+-+.|.++
T Consensus 344 ~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~S-e-------~~is~vV~~-----~d~~~Av~~Lh~~f~~~ 408 (421)
T 3ab4_A 344 VGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELISTS-E-------IRISVLIRE-----DDLDAAARALHEQFQLG 408 (421)
T ss_dssp EEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEEEEE-T-------TEEEEEEEG-----GGHHHHHHHHHHHTTCC
T ss_pred eEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEEEcC-C-------CeEEEEEeH-----HHHHHHHHHHHHHHhcC
Confidence 345889997 89999999999999999999866532 1 233333333 56777777777778654
No 110
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=71.12 E-value=19 Score=36.24 Aligned_cols=65 Identities=15% Similarity=0.014 Sum_probs=47.3
Q ss_pred EEEEEc-CCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhh
Q 020508 44 IHVFHC-PDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF 113 (325)
Q Consensus 44 ~ltv~g-~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l 113 (325)
.+++.+ +|+||+.+++-+.|+++|+|+.-+.|... .+|... +.+.++. .+.+...+.|+++..++
T Consensus 272 ~i~i~~~~~~~g~~~~if~~La~~~I~Vd~I~qs~~-~~~~~~--Isftv~~--~~~~~a~~~l~~~~~el 337 (600)
T 3l76_A 272 KVALLRVPDRPGVASKLFRDIAQQQVDIDLIIQSIH-DGNSND--IAFTVVK--DLLNTAEAVTSAIAPAL 337 (600)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHTTCCCCCEEBCCC-BTTEEE--EEEEECG--GGHHHHHHHHHHHGGGG
T ss_pred EEEEeCCCCcccHHHHHHHHHHHcCCCEEEEEeecc-CCCCce--EEEEEeH--HHHHHHHHHHHHHHHHh
Confidence 455555 79999999999999999999987777432 245544 4445555 25667777788887777
No 111
>1zvp_A Hypothetical protein VC0802; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 2.20A {Vibrio cholerae} SCOP: d.58.18.9 d.58.18.9
Probab=70.86 E-value=4.5 Score=32.83 Aligned_cols=35 Identities=14% Similarity=0.232 Sum_probs=30.4
Q ss_pred EEEEEEcC---CCcchHHHHHHHHHhcCCeEeEeeeec
Q 020508 43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFV 77 (325)
Q Consensus 43 ~~ltv~g~---DrpGIVa~Vt~~La~~giNI~~l~~~~ 77 (325)
..+++.|+ |-+|++++|++.|+++||.|--++++-
T Consensus 72 r~i~l~~~~~l~~vGi~a~is~~LA~agIsif~iSty~ 109 (133)
T 1zvp_A 72 SLITLTVHSSLEAVGLTAAFATKLAEHGISANVIAGYY 109 (133)
T ss_dssp EEEEEECCC--CCSCHHHHHHHHHHHTTCCCEEEECSS
T ss_pred EEEEEeccCCccHHHHHHHHHHHHHhCCCCcEEEEecc
Confidence 47777775 999999999999999999999888753
No 112
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=70.76 E-value=7.1 Score=35.60 Aligned_cols=67 Identities=9% Similarity=0.114 Sum_probs=39.5
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhc--C
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--N 204 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~--~ 204 (325)
++||++++.|. |......+.. .+ +.++++|+... .....++++++|++ + .+ +.+++. +
T Consensus 3 ~~~vgiiG~G~~g~~~~~~l~~--~~--~~~l~av~d~~----~~~~~~~~~~~~~~-~--~~--------~~~~l~~~~ 63 (331)
T 4hkt_A 3 TVRFGLLGAGRIGKVHAKAVSG--NA--DARLVAVADAF----PAAAEAIAGAYGCE-V--RT--------IDAIEAAAD 63 (331)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH--CT--TEEEEEEECSS----HHHHHHHHHHTTCE-E--CC--------HHHHHHCTT
T ss_pred ceEEEEECCCHHHHHHHHHHhh--CC--CcEEEEEECCC----HHHHHHHHHHhCCC-c--CC--------HHHHhcCCC
Confidence 58999999875 4333222222 12 47888776533 23467888999998 3 20 122333 5
Q ss_pred CCEEEEecc
Q 020508 205 TDFLVLARY 213 (325)
Q Consensus 205 ~Dliv~~g~ 213 (325)
+|+++++.-
T Consensus 64 ~D~V~i~tp 72 (331)
T 4hkt_A 64 IDAVVICTP 72 (331)
T ss_dssp CCEEEECSC
T ss_pred CCEEEEeCC
Confidence 777777653
No 113
>3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli}
Probab=69.45 E-value=24 Score=33.75 Aligned_cols=99 Identities=10% Similarity=0.103 Sum_probs=59.1
Q ss_pred CceEEEEEe-----CCchH-HHHHHHHhhcCCCCceEEEEEeCCCCCC-CchH----HHHHHHCCCCEEEecCCCChhHH
Q 020508 128 KYKVAVLAS-----KQEHC-LVDFLYGWQEGKLPVEITCVISNHDRGP-NSHV----IRFLERHGIPYHYLCAKENEREE 196 (325)
Q Consensus 128 ~~ri~v~~S-----g~g~~-l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~-~~~~----~~~a~~~gIp~~~~~~~~~~~~~ 196 (325)
.+||++++. |.+.+ ...++..+.. ++.++. +++ |+... ...+ .++|++.|..+....
T Consensus 191 Glkva~vgd~~~~~G~~nnVa~Sli~~~~~--lG~~v~-~~~-P~~~~~~~~~~~~a~~~a~~~G~~i~~~~-------- 258 (399)
T 3q98_A 191 GKKIAMTWAYSPSYGKPLSVPQGIIGLMTR--FGMDVT-LAH-PEGYDLIPDVVEVAKNNAKASGGSFRQVT-------- 258 (399)
T ss_dssp TCEEEEECCCCSSCCCCTHHHHHHHHHHGG--GTCEEE-EEC-CTTCCCCHHHHHHHHHHHHHHTCEEEEES--------
T ss_pred CCEEEEEEecccccCcchHHHHHHHHHHHH--cCCEEE-EEC-CcccCCCHHHHHHHHHHHHHcCCEEEEEc--------
Confidence 468998753 44433 3555555432 355643 333 43211 2233 345678898876543
Q ss_pred HHHHHhcCCCEEEEecc------------------------------------ccccChhHHhhcCC-CEEEEcCCCCCC
Q 020508 197 ELLELVQNTDFLVLARY------------------------------------MQILSGKFLRSYGK-DVINIHHGLLPS 239 (325)
Q Consensus 197 ~~~~~l~~~Dliv~~g~------------------------------------~~il~~~~l~~~~~-~~iNiHpslLP~ 239 (325)
++.+.++++|++..-.| .+.+.+++++..+. .++-+|| ||.
T Consensus 259 d~~eav~~aDvVytd~W~Smg~~~er~~~~~~~~~~~~~~~e~~~~~r~~~~~~yqVn~elm~~a~~~daifMHc--LPa 336 (399)
T 3q98_A 259 SMEEAFKDADIVYPKSWAPYKVMEERTELLRANDHEGLKALEKQCLAQNAQHKDWHCTEEMMELTRDGEALYMHC--LPA 336 (399)
T ss_dssp CHHHHHTTCSEEEECCCCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTTCCBCHHHHHTSGGGCCEECCC--SSC
T ss_pred CHHHHhCCCCEEEecCccccchhhhhhhhccccchhhhhhhhhhhhHHHHHccCcEECHHHHhhcCCCCcEEECC--CCC
Confidence 13455668899887543 35688888887653 6888998 788
Q ss_pred C
Q 020508 240 F 240 (325)
Q Consensus 240 y 240 (325)
+
T Consensus 337 ~ 337 (399)
T 3q98_A 337 D 337 (399)
T ss_dssp C
T ss_pred C
Confidence 7
No 114
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}
Probab=69.04 E-value=8.9 Score=36.10 Aligned_cols=74 Identities=9% Similarity=-0.011 Sum_probs=42.4
Q ss_pred CCceEEEEEeCC----chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCC--EEEecCCCChhHHHHHH
Q 020508 127 PKYKVAVLASKQ----EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIP--YHYLCAKENEREEELLE 200 (325)
Q Consensus 127 ~~~ri~v~~Sg~----g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp--~~~~~~~~~~~~~~~~~ 200 (325)
+++||+|++.|. |......+.. .+ ..++++++++++ .....++|+++|+| -. +. .-+++++
T Consensus 11 ~~~rvgiiG~G~~~~ig~~h~~~~~~--~~--~~~lva~v~d~~---~~~a~~~a~~~g~~~~~~-~~-----~~~~ll~ 77 (398)
T 3dty_A 11 QPIRWAMVGGGSQSQIGYIHRCAALR--DN--TFVLVAGAFDID---PIRGSAFGEQLGVDSERC-YA-----DYLSMFE 77 (398)
T ss_dssp SCEEEEEEECCTTCSSHHHHHHHHHG--GG--SEEEEEEECCSS---HHHHHHHHHHTTCCGGGB-CS-----SHHHHHH
T ss_pred CcceEEEEcCCccchhHHHHHHHHhh--CC--CeEEEEEEeCCC---HHHHHHHHHHhCCCccee-eC-----CHHHHHh
Confidence 468999999996 3222222221 22 368887566553 23567889999997 22 11 1234444
Q ss_pred Hh----cCCCEEEEecc
Q 020508 201 LV----QNTDFLVLARY 213 (325)
Q Consensus 201 ~l----~~~Dliv~~g~ 213 (325)
.- .++|+++++.-
T Consensus 78 ~~~~~~~~vD~V~i~tp 94 (398)
T 3dty_A 78 QEARRADGIQAVSIATP 94 (398)
T ss_dssp HHTTCTTCCSEEEEESC
T ss_pred cccccCCCCCEEEECCC
Confidence 31 14788887653
No 115
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=68.90 E-value=9.7 Score=31.09 Aligned_cols=59 Identities=10% Similarity=-0.078 Sum_probs=40.9
Q ss_pred ceEEEEEEc---CCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhh
Q 020508 41 THGIHVFHC---PDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (325)
Q Consensus 41 ~~~~ltv~g---~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~ 111 (325)
.-..+++.| +|+||+.+++-+.|+++|+||.-+.+.. . .+.+.+++ .. .+.+.++++.+
T Consensus 17 ~va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd~I~~s~----~----~Isf~v~~-~~---~~~~il~~l~~ 78 (157)
T 3mah_A 17 GITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVATSE----V----GVSLTIDN-DK---NLPDIVRALSD 78 (157)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCSCEECCS----S----EEEEEESC-CT---THHHHHHHHTT
T ss_pred CEEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEEEEEecC----C----EEEEEECC-hH---HHHHHHHHHhc
Confidence 345778875 4899999999999999999998877631 1 45555665 22 35555555543
No 116
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=68.34 E-value=15 Score=35.35 Aligned_cols=61 Identities=16% Similarity=0.218 Sum_probs=41.5
Q ss_pred CceEEEEEeCCc--hHHHHHHHHhhcCCCCceEEEEEeCCCCCCC-----chHHHHHHHCCCCEEEec
Q 020508 128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPN-----SHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 128 ~~ri~v~~Sg~g--~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~-----~~~~~~a~~~gIp~~~~~ 188 (325)
..||+|.+||.. ++|-.++...+....+.++.+|..++.-... ..+.++|+++|||++...
T Consensus 13 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdhglr~~s~~~~~~v~~~~~~lgi~~~v~~ 80 (433)
T 1ni5_A 13 SRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTHCENVCQQWQVPLVVER 80 (433)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCCSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEECCCCcccHHHHHHHHHHHHHcCCcEEEEE
Confidence 358999999853 4555566554322145788888888743222 247889999999998776
No 117
>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}
Probab=67.71 E-value=9.7 Score=32.68 Aligned_cols=71 Identities=10% Similarity=0.130 Sum_probs=42.3
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCC
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 206 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 206 (325)
++||+|++.|. |+.+...+.. . +++|..+ .+++ ...+.++++++|+.... + . . +.++++|
T Consensus 23 mmkI~IIG~G~mG~~la~~l~~--~---g~~V~~v-~~r~---~~~~~~l~~~~g~~~~~-~-----~-~---~~~~~aD 83 (220)
T 4huj_A 23 MTTYAIIGAGAIGSALAERFTA--A---QIPAIIA-NSRG---PASLSSVTDRFGASVKA-V-----E-L---KDALQAD 83 (220)
T ss_dssp SCCEEEEECHHHHHHHHHHHHH--T---TCCEEEE-CTTC---GGGGHHHHHHHTTTEEE-C-----C-H---HHHTTSS
T ss_pred CCEEEEECCCHHHHHHHHHHHh--C---CCEEEEE-ECCC---HHHHHHHHHHhCCCccc-C-----h-H---HHHhcCC
Confidence 57999999876 5555443322 2 3566543 4443 23467778888887653 1 1 1 2245789
Q ss_pred EEEEecccccc
Q 020508 207 FLVLARYMQIL 217 (325)
Q Consensus 207 liv~~g~~~il 217 (325)
+++++--.+.+
T Consensus 84 vVilavp~~~~ 94 (220)
T 4huj_A 84 VVILAVPYDSI 94 (220)
T ss_dssp EEEEESCGGGH
T ss_pred EEEEeCChHHH
Confidence 99998654443
No 118
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=67.46 E-value=7.1 Score=35.86 Aligned_cols=71 Identities=11% Similarity=0.129 Sum_probs=41.4
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhc--C
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--N 204 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~--~ 204 (325)
++||+|++.|. |.. ++..+... .+.++++|+... .....++++++|++..+-+ +.+++. +
T Consensus 2 ~~rvgiIG~G~~g~~---~~~~l~~~-~~~~l~av~d~~----~~~~~~~~~~~~~~~~~~~---------~~~ll~~~~ 64 (344)
T 3ezy_A 2 SLRIGVIGLGRIGTI---HAENLKMI-DDAILYAISDVR----EDRLREMKEKLGVEKAYKD---------PHELIEDPN 64 (344)
T ss_dssp CEEEEEECCSHHHHH---HHHHGGGS-TTEEEEEEECSC----HHHHHHHHHHHTCSEEESS---------HHHHHHCTT
T ss_pred eeEEEEEcCCHHHHH---HHHHHHhC-CCcEEEEEECCC----HHHHHHHHHHhCCCceeCC---------HHHHhcCCC
Confidence 47999988875 333 33333321 147888876533 2356778899999843211 223333 6
Q ss_pred CCEEEEecccc
Q 020508 205 TDFLVLARYMQ 215 (325)
Q Consensus 205 ~Dliv~~g~~~ 215 (325)
+|+++++.-..
T Consensus 65 ~D~V~i~tp~~ 75 (344)
T 3ezy_A 65 VDAVLVCSSTN 75 (344)
T ss_dssp CCEEEECSCGG
T ss_pred CCEEEEcCCCc
Confidence 78888775433
No 119
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=67.07 E-value=21 Score=33.00 Aligned_cols=71 Identities=11% Similarity=0.115 Sum_probs=39.5
Q ss_pred CCceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhc--
Q 020508 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-- 203 (325)
Q Consensus 127 ~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~-- 203 (325)
+++||+|++.|. |.. .+..+.....+.++++|+.... ....++++++|++...+.+ +.+++.
T Consensus 22 ~~~rvgiIG~G~~g~~---~~~~l~~~~~~~~lvav~d~~~----~~~~~~a~~~g~~~~~~~~--------~~~ll~~~ 86 (357)
T 3ec7_A 22 MTLKAGIVGIGMIGSD---HLRRLANTVSGVEVVAVCDIVA----GRAQAALDKYAIEAKDYND--------YHDLINDK 86 (357)
T ss_dssp CCEEEEEECCSHHHHH---HHHHHHHTCTTEEEEEEECSST----THHHHHHHHHTCCCEEESS--------HHHHHHCT
T ss_pred CeeeEEEECCcHHHHH---HHHHHHhhCCCcEEEEEEeCCH----HHHHHHHHHhCCCCeeeCC--------HHHHhcCC
Confidence 468999988875 332 2222221112478888775432 3567888999964333331 222332
Q ss_pred CCCEEEEec
Q 020508 204 NTDFLVLAR 212 (325)
Q Consensus 204 ~~Dliv~~g 212 (325)
++|+++++.
T Consensus 87 ~~D~V~i~t 95 (357)
T 3ec7_A 87 DVEVVIITA 95 (357)
T ss_dssp TCCEEEECS
T ss_pred CCCEEEEcC
Confidence 467766654
No 120
>3kzn_A Aotcase, N-acetylornithine carbamoyltransferase; transcarbamylase, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: KCX AOR; 1.80A {Xanthomonas campestris PV} PDB: 3kzc_A* 3kzm_A* 3kzk_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 3l05_A* 3l02_A* 3m4n_A* 3l06_A* 3l04_A*
Probab=66.63 E-value=45 Score=31.26 Aligned_cols=56 Identities=11% Similarity=0.090 Sum_probs=35.2
Q ss_pred HHHHCCCCEEEecCCCChhHHHHHHHhcCCCEEEEeccc--------------------cccChhHHhhcCCCEEEEcCC
Q 020508 176 FLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYM--------------------QILSGKFLRSYGKDVINIHHG 235 (325)
Q Consensus 176 ~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dliv~~g~~--------------------~il~~~~l~~~~~~~iNiHps 235 (325)
.+++.|..+.... ++.+.++++|++..-.|. +.+.+++++..+ ..+-+||
T Consensus 245 ~~~~~g~~i~~~~--------d~~eav~~aDvvyt~r~q~~r~~~~~~~~~~~~~~~~~y~v~~~l~~~~~-~ai~MHp- 314 (359)
T 3kzn_A 245 NVAESGGSLQVSH--------DIDSAYAGADVVYAKSWGALPFFGNWEPEKPIRDQYQHFIVDERKMALTN-NGVFSHC- 314 (359)
T ss_dssp HHHHHSCEEEEEC--------CHHHHHTTCSEEEEECCCCGGGTTCCTTHHHHHGGGGGGSBCHHHHHTSS-SCEEECC-
T ss_pred HHHhhCCCccccc--------CHHHHhcCCeEEEEEEEEEeecccchhhhHHHHHHHhccChHHHHhcCCC-CCEEECC-
Confidence 3556676665443 234556688998877662 235566665544 5677997
Q ss_pred CCCCCCC
Q 020508 236 LLPSFKG 242 (325)
Q Consensus 236 lLP~yRG 242 (325)
||.+||
T Consensus 315 -lP~~Rg 320 (359)
T 3kzn_A 315 -LPLRRN 320 (359)
T ss_dssp -SCCCBT
T ss_pred -CCCCCC
Confidence 588888
No 121
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=66.27 E-value=42 Score=26.06 Aligned_cols=70 Identities=11% Similarity=0.028 Sum_probs=50.9
Q ss_pred CCCCcceEEEEEEcCCCcchHHHHHHHHHhc---CCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhh
Q 020508 36 VSPTLTHGIHVFHCPDEVGIVAKLSECIASR---GGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKM 112 (325)
Q Consensus 36 ~~~~~~~~~ltv~g~DrpGIVa~Vt~~La~~---giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~ 112 (325)
.-..+..|-+.|+|++.++.+++|..++..+ +..+ ..+. ...|.|. -+.+.+.. .+.+++.+-++++++.
T Consensus 30 lieFPc~y~~KvIG~a~~~~~~~V~~vv~~~~p~d~~~-~~r~---Ss~GkY~-Svtv~v~v--~S~eQv~aiY~~L~~~ 102 (109)
T 1rwu_A 30 LLEFPTPFTYKVMGQALPELVDQVVEVVQRHAPGDYTP-TVKP---SSKGNYH-SVSITINA--THIEQVETLYEELGKI 102 (109)
T ss_dssp SSCCCCCEEEEEEEECCTTHHHHHHHHHHHHSSSCCCE-EEEE---SSCSSEE-EEEEEECC--SSHHHHHHHHHHHSCS
T ss_pred hccCCCCceEEEEEECcHHHHHHHHHHHHHhCCCCCCc-eecC---CCCCeEE-EEEEEEEE--CCHHHHHHHHHHHhcC
Confidence 3445678999999999999999999999988 6666 2222 2357664 44555544 4688999988887653
No 122
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=66.19 E-value=20 Score=33.05 Aligned_cols=84 Identities=11% Similarity=0.096 Sum_probs=46.0
Q ss_pred CceEEEEEeCC-chHH--HHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEec-CCCC---h----h--
Q 020508 128 KYKVAVLASKQ-EHCL--VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKEN---E----R-- 194 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l--~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~-~~~~---~----~-- 194 (325)
++||++.+.|. ||-. .+|.+.+++. +++|..|.+.+. --.++..+.|+|++.++ .... . .
T Consensus 2 ~~~i~i~~GGTgGHi~palala~~L~~~--g~~V~~vg~~~g-----~e~~~v~~~g~~~~~i~~~~~~~~~~~~~~~~~ 74 (365)
T 3s2u_A 2 KGNVLIMAGGTGGHVFPALACAREFQAR--GYAVHWLGTPRG-----IENDLVPKAGLPLHLIQVSGLRGKGLKSLVKAP 74 (365)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHHHHHHT--TCEEEEEECSSS-----THHHHTGGGTCCEEECC--------------CH
T ss_pred CCcEEEEcCCCHHHHHHHHHHHHHHHhC--CCEEEEEECCch-----HhhchhhhcCCcEEEEECCCcCCCCHHHHHHHH
Confidence 46888877776 4533 3455555543 578776554321 12456678899998776 2110 0 0
Q ss_pred ------HHHHHHHhc--CCCEEEEeccccccC
Q 020508 195 ------EEELLELVQ--NTDFLVLARYMQILS 218 (325)
Q Consensus 195 ------~~~~~~~l~--~~Dliv~~g~~~il~ 218 (325)
-.+....++ +||++++.|..--+|
T Consensus 75 ~~~~~~~~~~~~~l~~~~PDvVi~~g~~~s~p 106 (365)
T 3s2u_A 75 LELLKSLFQALRVIRQLRPVCVLGLGGYVTGP 106 (365)
T ss_dssp HHHHHHHHHHHHHHHHHCCSEEEECSSSTHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEcCCcchHH
Confidence 012233444 899999886533333
No 123
>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*
Probab=65.80 E-value=11 Score=32.61 Aligned_cols=99 Identities=11% Similarity=0.061 Sum_probs=55.2
Q ss_pred CCChHHHHHHHHhhhhhhcccceeeeec----------CCCCCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCC
Q 020508 96 KWPREQMDEDFFKLSKMFNAMRSVVRVP----------DIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH 165 (325)
Q Consensus 96 ~~~~~~L~~~l~~l~~~l~~~~~~~~~~----------~~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~ 165 (325)
+.+.+++|.+|.-++ .+|-.+..+++. ..++++|+++++.|. .-+.++....... +.++++++-..
T Consensus 39 ~~~~~~iRkdls~~g-~~G~~g~gY~v~~L~~~~~~~lg~~~~~rV~IIGaG~--~G~~la~~~~~~~-g~~iVg~~D~d 114 (211)
T 2dt5_A 39 QVTAFQVRKDLSYFG-SYGTRGVGYTVPVLKRELRHILGLNRKWGLCIVGMGR--LGSALADYPGFGE-SFELRGFFDVD 114 (211)
T ss_dssp TSCHHHHHHHHHHTT-CCCCTTTCEEHHHHHHHHHHHHTTTSCEEEEEECCSH--HHHHHHHCSCCCS-SEEEEEEEESC
T ss_pred CCCHHHeechHHHHH-HhcCCceeEEhHHHHHHHHHHhCcCCCCEEEEECccH--HHHHHHHhHhhcC-CcEEEEEEeCC
Confidence 456677777777773 345544444441 134567888877664 3334444322334 78999999755
Q ss_pred CCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhc-CCCEEEEec
Q 020508 166 DRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-NTDFLVLAR 212 (325)
Q Consensus 166 ~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~-~~Dliv~~g 212 (325)
++..+. .-.|+|+...+ ++.+.++ ++|.++++-
T Consensus 115 p~k~g~------~i~gv~V~~~~--------dl~ell~~~ID~ViIA~ 148 (211)
T 2dt5_A 115 PEKVGR------PVRGGVIEHVD--------LLPQRVPGRIEIALLTV 148 (211)
T ss_dssp TTTTTC------EETTEEEEEGG--------GHHHHSTTTCCEEEECS
T ss_pred HHHHhh------hhcCCeeecHH--------hHHHHHHcCCCEEEEeC
Confidence 432111 12467776321 2444444 678877763
No 124
>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A
Probab=65.54 E-value=9.6 Score=36.51 Aligned_cols=50 Identities=12% Similarity=0.092 Sum_probs=30.7
Q ss_pred CCceEEEEEe----CC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCC
Q 020508 127 PKYKVAVLAS----KQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIP 183 (325)
Q Consensus 127 ~~~ri~v~~S----g~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp 183 (325)
+++||+|++. |. |......+.... + +.++++|+... .....++++++|+|
T Consensus 19 ~~irvgiIG~g~~gG~~g~~~~~~l~~~~-~--~~~lvav~d~~----~~~~~~~a~~~g~~ 73 (438)
T 3btv_A 19 APIRVGFVGLNAAKGWAIKTHYPAILQLS-S--QFQITALYSPK----IETSIATIQRLKLS 73 (438)
T ss_dssp CCEEEEEESCCTTSSSTTTTHHHHHHHTT-T--TEEEEEEECSS----HHHHHHHHHHTTCT
T ss_pred CCCEEEEEcccCCCChHHHHHHHHHHhcC-C--CeEEEEEEeCC----HHHHHHHHHHcCCC
Confidence 4689999998 54 333333333210 2 47888876533 23466788999997
No 125
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=65.39 E-value=8.6 Score=35.79 Aligned_cols=71 Identities=10% Similarity=0.105 Sum_probs=35.9
Q ss_pred CCCceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcC
Q 020508 126 DPKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQN 204 (325)
Q Consensus 126 ~~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~ 204 (325)
.++|||+|+++|. |+.+...| .+ ..+|.. . ... ..-.+.+.+ .++...++ -.+.+++.+.+++
T Consensus 14 g~~mkilvlGaG~vG~~~~~~L---~~---~~~v~~-~-~~~----~~~~~~~~~-~~~~~~~d---~~d~~~l~~~~~~ 77 (365)
T 3abi_A 14 GRHMKVLILGAGNIGRAIAWDL---KD---EFDVYI-G-DVN----NENLEKVKE-FATPLKVD---ASNFDKLVEVMKE 77 (365)
T ss_dssp --CCEEEEECCSHHHHHHHHHH---TT---TSEEEE-E-ESC----HHHHHHHTT-TSEEEECC---TTCHHHHHHHHTT
T ss_pred CCccEEEEECCCHHHHHHHHHH---hc---CCCeEE-E-EcC----HHHHHHHhc-cCCcEEEe---cCCHHHHHHHHhC
Confidence 4679999998864 44433333 22 245432 2 221 111222322 34444444 1234567777778
Q ss_pred CCEEEEec
Q 020508 205 TDFLVLAR 212 (325)
Q Consensus 205 ~Dliv~~g 212 (325)
+|++|++.
T Consensus 78 ~DvVi~~~ 85 (365)
T 3abi_A 78 FELVIGAL 85 (365)
T ss_dssp CSEEEECC
T ss_pred CCEEEEec
Confidence 99998874
No 126
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=63.92 E-value=6.6 Score=36.49 Aligned_cols=50 Identities=12% Similarity=0.143 Sum_probs=29.1
Q ss_pred CCceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEE
Q 020508 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYH 185 (325)
Q Consensus 127 ~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~ 185 (325)
+++||+|++.|. |......+.. .+ +.++++|+.... .-.+.|+++|++++
T Consensus 4 ~~~~vgiiG~G~~g~~~~~~l~~--~~--~~~l~av~d~~~-----~~~~~a~~~g~~~~ 54 (359)
T 3e18_A 4 KKYQLVIVGYGGMGSYHVTLASA--AD--NLEVHGVFDILA-----EKREAAAQKGLKIY 54 (359)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHT--ST--TEEEEEEECSSH-----HHHHHHHTTTCCBC
T ss_pred CcCcEEEECcCHHHHHHHHHHHh--CC--CcEEEEEEcCCH-----HHHHHHHhcCCcee
Confidence 368999998875 3322222222 12 478888775432 22356778888754
No 127
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia reductive methylation, structural genomics, PSI-2, protein initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=63.85 E-value=12 Score=33.90 Aligned_cols=73 Identities=14% Similarity=0.202 Sum_probs=40.5
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCC
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 206 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 206 (325)
++||+|++.|. |..+...+.. .+ +.++++|+... .....++++++|++..+ . . .+++++ .++|
T Consensus 1 ~~~vgiiG~G~~g~~~~~~l~~--~~--~~~~~~v~d~~----~~~~~~~~~~~~~~~~~-~----~-~~~~l~--~~~D 64 (325)
T 2ho3_A 1 MLKLGVIGTGAISHHFIEAAHT--SG--EYQLVAIYSRK----LETAATFASRYQNIQLF-D----Q-LEVFFK--SSFD 64 (325)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH--TT--SEEEEEEECSS----HHHHHHHGGGSSSCEEE-S----C-HHHHHT--SSCS
T ss_pred CeEEEEEeCCHHHHHHHHHHHh--CC--CeEEEEEEeCC----HHHHHHHHHHcCCCeEe-C----C-HHHHhC--CCCC
Confidence 47999988875 3332222221 22 47888776433 23456778888875432 2 1 123320 2788
Q ss_pred EEEEeccccc
Q 020508 207 FLVLARYMQI 216 (325)
Q Consensus 207 liv~~g~~~i 216 (325)
+++++.-...
T Consensus 65 ~V~i~tp~~~ 74 (325)
T 2ho3_A 65 LVYIASPNSL 74 (325)
T ss_dssp EEEECSCGGG
T ss_pred EEEEeCChHH
Confidence 8888765443
No 128
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=63.61 E-value=45 Score=30.57 Aligned_cols=106 Identities=4% Similarity=-0.006 Sum_probs=56.2
Q ss_pred cCCCCCceEEEEEeCC-ch--HHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCC---h---
Q 020508 123 PDIDPKYKVAVLASKQ-EH--CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKEN---E--- 193 (325)
Q Consensus 123 ~~~~~~~ri~v~~Sg~-g~--~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~---~--- 193 (325)
.....++||+++..+. |+ .+..|.+.+++. +++|.. ++.. ...+..++.|+++..++.... .
T Consensus 15 ~~~~~m~rIl~~~~~~~GHv~p~l~La~~L~~~--Gh~V~v-~~~~------~~~~~~~~~G~~~~~~~~~~~~~~~~~~ 85 (415)
T 3rsc_A 15 IEGRHMAHLLIVNVASHGLILPTLTVVTELVRR--GHRVSY-VTAG------GFAEPVRAAGATVVPYQSEIIDADAAEV 85 (415)
T ss_dssp ----CCCEEEEECCSCHHHHGGGHHHHHHHHHT--TCEEEE-EECG------GGHHHHHHTTCEEEECCCSTTTCCHHHH
T ss_pred cCcccCCEEEEEeCCCccccccHHHHHHHHHHC--CCEEEE-EeCH------HHHHHHHhcCCEEEeccccccccccchh
Confidence 3345678999987664 43 334455555443 578664 4432 246677889999987762110 0
Q ss_pred -------------h-------HHHHHHHhc--CCCEEEEeccccccChhHHhhcCCCEEEEcCCCC
Q 020508 194 -------------R-------EEELLELVQ--NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLL 237 (325)
Q Consensus 194 -------------~-------~~~~~~~l~--~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslL 237 (325)
. -.++.+.++ +||++++-++.-....-.-...+..++.+-+++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~PDlVi~d~~~~~~~~~aA~~~giP~v~~~~~~~ 151 (415)
T 3rsc_A 86 FGSDDLGVRPHLMYLRENVSVLRATAEALDGDVPDLVLYDDFPFIAGQLLAARWRRPAVRLSAAFA 151 (415)
T ss_dssp HHSSSSCHHHHHHHHHHHHHHHHHHHHHHSSSCCSEEEEESTTHHHHHHHHHHTTCCEEEEESSCC
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEECchhhhHHHHHHHHhCCCEEEEEeccc
Confidence 0 023444554 7999997534333222233344555665554443
No 129
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=63.53 E-value=9.6 Score=29.79 Aligned_cols=69 Identities=17% Similarity=0.228 Sum_probs=37.4
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhc--C
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--N 204 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~--~ 204 (325)
+++|+|++.|. |..+...|.. . +++++++-.++ ...+.+.+.|+++...+ ..+++.++.+. +
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~--~---g~~V~~id~~~------~~~~~~~~~~~~~~~gd----~~~~~~l~~~~~~~ 70 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTA--A---GKKVLAVDKSK------EKIELLEDEGFDAVIAD----PTDESFYRSLDLEG 70 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHH--T---TCCEEEEESCH------HHHHHHHHTTCEEEECC----TTCHHHHHHSCCTT
T ss_pred CCEEEEECCCHHHHHHHHHHHH--C---CCeEEEEECCH------HHHHHHHHCCCcEEECC----CCCHHHHHhCCccc
Confidence 45888887764 4444443332 2 35665443222 23455566788876544 12234444443 7
Q ss_pred CCEEEEe
Q 020508 205 TDFLVLA 211 (325)
Q Consensus 205 ~Dliv~~ 211 (325)
+|+++++
T Consensus 71 ~d~vi~~ 77 (141)
T 3llv_A 71 VSAVLIT 77 (141)
T ss_dssp CSEEEEC
T ss_pred CCEEEEe
Confidence 8988764
No 130
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}
Probab=63.47 E-value=14 Score=33.58 Aligned_cols=68 Identities=16% Similarity=0.301 Sum_probs=38.3
Q ss_pred CceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCC-CCEEEecCCCChhHHHHHHHhc--C
Q 020508 128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHG-IPYHYLCAKENEREEELLELVQ--N 204 (325)
Q Consensus 128 ~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~g-Ip~~~~~~~~~~~~~~~~~~l~--~ 204 (325)
++||+|++.|..... .++..++.. +.++++|+.... ....+++++++ ++++ . +..++++ +
T Consensus 4 ~~rvgiiG~G~~~~~-~~~~~l~~~--~~~lvav~d~~~----~~~~~~a~~~~~~~~~--~--------~~~~ll~~~~ 66 (336)
T 2p2s_A 4 KIRFAAIGLAHNHIY-DMCQQLIDA--GAELAGVFESDS----DNRAKFTSLFPSVPFA--A--------SAEQLITDAS 66 (336)
T ss_dssp CCEEEEECCSSTHHH-HHHHHHHHT--TCEEEEEECSCT----TSCHHHHHHSTTCCBC--S--------CHHHHHTCTT
T ss_pred ccEEEEECCChHHHH-HhhhhhcCC--CcEEEEEeCCCH----HHHHHHHHhcCCCccc--C--------CHHHHhhCCC
Confidence 689999998865421 223333322 478888876442 23467788884 3332 1 1223343 5
Q ss_pred CCEEEEec
Q 020508 205 TDFLVLAR 212 (325)
Q Consensus 205 ~Dliv~~g 212 (325)
+|+++++.
T Consensus 67 ~D~V~i~t 74 (336)
T 2p2s_A 67 IDLIACAV 74 (336)
T ss_dssp CCEEEECS
T ss_pred CCEEEEeC
Confidence 67777664
No 131
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=63.21 E-value=22 Score=32.51 Aligned_cols=72 Identities=22% Similarity=0.193 Sum_probs=41.2
Q ss_pred CCCceEEEEEeC-C-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhc
Q 020508 126 DPKYKVAVLASK-Q-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 203 (325)
Q Consensus 126 ~~~~ri~v~~Sg-~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 203 (325)
.+++||++++.| . |......+ +.-..+.++++|+... .....++|+++|+|-.+ . ++.++|.
T Consensus 16 ~~~irvgiIG~G~~~g~~~~~~l---~~~~~~~~lvav~d~~----~~~~~~~a~~~~~~~~~-~--------~~~~ll~ 79 (340)
T 1zh8_A 16 LRKIRLGIVGCGIAARELHLPAL---KNLSHLFEITAVTSRT----RSHAEEFAKMVGNPAVF-D--------SYEELLE 79 (340)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHH---HTTTTTEEEEEEECSS----HHHHHHHHHHHSSCEEE-S--------CHHHHHH
T ss_pred CCceeEEEEecCHHHHHHHHHHH---HhCCCceEEEEEEcCC----HHHHHHHHHHhCCCccc-C--------CHHHHhc
Confidence 467999999887 3 33222222 2211247888876533 23467788999985432 2 1223343
Q ss_pred --CCCEEEEecc
Q 020508 204 --NTDFLVLARY 213 (325)
Q Consensus 204 --~~Dliv~~g~ 213 (325)
++|+++++.-
T Consensus 80 ~~~vD~V~i~tp 91 (340)
T 1zh8_A 80 SGLVDAVDLTLP 91 (340)
T ss_dssp SSCCSEEEECCC
T ss_pred CCCCCEEEEeCC
Confidence 5788887753
No 132
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=62.66 E-value=6.3 Score=37.52 Aligned_cols=76 Identities=5% Similarity=0.019 Sum_probs=40.5
Q ss_pred CCceEEEEEeCCchHH-HHHHHHhh-cCCCCceEEEEEeCCCCCCCchHHHHHHHCCCC--EEEecCCCChhHHHHHHHh
Q 020508 127 PKYKVAVLASKQEHCL-VDFLYGWQ-EGKLPVEITCVISNHDRGPNSHVIRFLERHGIP--YHYLCAKENEREEELLELV 202 (325)
Q Consensus 127 ~~~ri~v~~Sg~g~~l-~~Ll~~~~-~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp--~~~~~~~~~~~~~~~~~~l 202 (325)
+++||+|++.|.++-+ ...+..++ .+ ..++++.+++++ .....++|+++|+| -.+ . .-+++++.-
T Consensus 36 ~~~rvgiiG~G~~~~ig~~h~~~~~~~~--~~~lva~v~d~~---~~~a~~~a~~~g~~~~~~~-~-----~~~~ll~~~ 104 (417)
T 3v5n_A 36 KRIRLGMVGGGSGAFIGAVHRIAARLDD--HYELVAGALSST---PEKAEASGRELGLDPSRVY-S-----DFKEMAIRE 104 (417)
T ss_dssp CCEEEEEESCC--CHHHHHHHHHHHHTS--CEEEEEEECCSS---HHHHHHHHHHHTCCGGGBC-S-----CHHHHHHHH
T ss_pred CcceEEEEcCCCchHHHHHHHHHHhhCC--CcEEEEEEeCCC---HHHHHHHHHHcCCCccccc-C-----CHHHHHhcc
Confidence 4689999998863211 11112222 22 367886455553 23567888999997 221 1 113444431
Q ss_pred ----cCCCEEEEecc
Q 020508 203 ----QNTDFLVLARY 213 (325)
Q Consensus 203 ----~~~Dliv~~g~ 213 (325)
.++|+++++.-
T Consensus 105 ~~~~~~vD~V~I~tp 119 (417)
T 3v5n_A 105 AKLKNGIEAVAIVTP 119 (417)
T ss_dssp HHCTTCCSEEEECSC
T ss_pred cccCCCCcEEEECCC
Confidence 14788887654
No 133
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=62.02 E-value=27 Score=25.67 Aligned_cols=72 Identities=18% Similarity=0.314 Sum_probs=36.7
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCC
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 206 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 206 (325)
++||+|++.|. |..+...+. +.| .++|.+ +. ++ ..-.+.+...++.+...+- ...+++.+.++++|
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~--~~g--~~~v~~-~~-r~----~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~~~~d 71 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLK--TSS--NYSVTV-AD-HD----LAALAVLNRMGVATKQVDA---KDEAGLAKALGGFD 71 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHH--HCS--SEEEEE-EE-SC----HHHHHHHHTTTCEEEECCT---TCHHHHHHHTTTCS
T ss_pred cCeEEEECCCHHHHHHHHHHH--hCC--CceEEE-Ee-CC----HHHHHHHHhCCCcEEEecC---CCHHHHHHHHcCCC
Confidence 46888887642 333322222 222 255543 32 32 1122333467777765541 12345666666899
Q ss_pred EEEEec
Q 020508 207 FLVLAR 212 (325)
Q Consensus 207 liv~~g 212 (325)
+++.+.
T Consensus 72 ~vi~~~ 77 (118)
T 3ic5_A 72 AVISAA 77 (118)
T ss_dssp EEEECS
T ss_pred EEEECC
Confidence 988765
No 134
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=61.65 E-value=35 Score=26.67 Aligned_cols=80 Identities=15% Similarity=0.237 Sum_probs=43.1
Q ss_pred ceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCCE
Q 020508 129 YKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDF 207 (325)
Q Consensus 129 ~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dl 207 (325)
.++++++.-. .-++..++++++.=.-..++..++.-... ....+.++++++|+.+.. . . ...+++.+.+..+|+
T Consensus 3 ~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~l~i~G~g~-~~~~~~~~~~~~~~~v~~-g-~--~~~~~~~~~~~~adv 77 (166)
T 3qhp_A 3 FKIAMVGRYSNEKNQSVLIKAVALSKYKQDIVLLLKGKGP-DEKKIKLLAQKLGVKAEF-G-F--VNSNELLEILKTCTL 77 (166)
T ss_dssp EEEEEESCCSTTTTHHHHHHHHHTCTTGGGEEEEEECCST-THHHHHHHHHHHTCEEEC-C-C--CCHHHHHHHHTTCSE
T ss_pred eEEEEEeccchhcCHHHHHHHHHHhccCCCeEEEEEeCCc-cHHHHHHHHHHcCCeEEE-e-e--cCHHHHHHHHHhCCE
Confidence 4455544322 23555666654421101234444443211 235678889999985553 4 2 123567788878898
Q ss_pred EEEecc
Q 020508 208 LVLARY 213 (325)
Q Consensus 208 iv~~g~ 213 (325)
.++.+.
T Consensus 78 ~v~ps~ 83 (166)
T 3qhp_A 78 YVHAAN 83 (166)
T ss_dssp EEECCC
T ss_pred EEECCc
Confidence 886544
No 135
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Probab=61.30 E-value=15 Score=33.21 Aligned_cols=50 Identities=16% Similarity=0.219 Sum_probs=29.6
Q ss_pred CCceEEEEEeCC-chH-HHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCE
Q 020508 127 PKYKVAVLASKQ-EHC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPY 184 (325)
Q Consensus 127 ~~~ri~v~~Sg~-g~~-l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~ 184 (325)
+++||+|++.|. |.. ....+.. .+ +.++++|+.... ....++++++|+++
T Consensus 4 ~~~~vgiiG~G~~g~~~~~~~l~~--~~--~~~lvav~d~~~----~~~~~~~~~~g~~~ 55 (319)
T 1tlt_A 4 KKLRIGVVGLGGIAQKAWLPVLAA--AS--DWTLQGAWSPTR----AKALPICESWRIPY 55 (319)
T ss_dssp -CEEEEEECCSTHHHHTHHHHHHS--CS--SEEEEEEECSSC----TTHHHHHHHHTCCB
T ss_pred CcceEEEECCCHHHHHHHHHHHHh--CC--CeEEEEEECCCH----HHHHHHHHHcCCCc
Confidence 368999998876 332 2222221 12 478887765432 23567788888883
No 136
>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}
Probab=61.28 E-value=77 Score=28.81 Aligned_cols=153 Identities=10% Similarity=-0.015 Sum_probs=81.1
Q ss_pred hHHHHHHHHHhcCCeEeEeeeeccCCCCe-E---E--EEEEEEeCCCCCChHHHHHHHHhhhhhhcccceeeeecCCCCC
Q 020508 55 IVAKLSECIASRGGNILAADVFVPEKKNV-F---Y--SRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPK 128 (325)
Q Consensus 55 IVa~Vt~~La~~giNI~~l~~~~~~~~g~-F---~--~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~~~~ 128 (325)
-+++.+++|...+.+++-+.......-.. + . -.+-..... ...+.|.-.++--+-+.+|- -+.
T Consensus 78 sl~DTarvls~~~~D~iviR~~~~~~~~~~la~~~~vPVINAG~g~-~~HPtQaLaDl~Ti~e~~g~----------l~g 146 (291)
T 3d6n_B 78 SFFDTLKTFEGLGFDYVVFRVPFVFFPYKEIVKSLNLRLVNAGDGT-HQHPSQGLIDFFTIKEHFGE----------VKD 146 (291)
T ss_dssp CHHHHHHHHHHTTCSEEEEEESSCCCSCHHHHHTCSSEEEEEEETT-TBCHHHHHHHHHHHHHHHSC----------CTT
T ss_pred cHHHHHHHHHHhcCCEEEEEcCChHHHHHHHHHhCCCCEEeCccCC-CcCcHHHHHHHHHHHHHhCC----------cCC
Confidence 68888888888888888777753210011 1 1 122222223 45566666666666555531 134
Q ss_pred ceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCCE
Q 020508 129 YKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDF 207 (325)
Q Consensus 129 ~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dl 207 (325)
+||++++--. +.....++..+.. ++.++. ++.|+.....++ ++.|+.+ .. ++.+.++++|+
T Consensus 147 l~va~vGDl~~~rva~Sl~~~~~~--~g~~v~--~~~P~~~~p~~~----~~~g~~~--~~--------d~~eav~~aDv 208 (291)
T 3d6n_B 147 LRVLYVGDIKHSRVFRSGAPLLNM--FGAKIG--VCGPKTLIPRDV----EVFKVDV--FD--------DVDKGIDWADV 208 (291)
T ss_dssp CEEEEESCCTTCHHHHHHHHHHHH--TTCEEE--EESCGGGSCTTG----GGGCEEE--ES--------SHHHHHHHCSE
T ss_pred cEEEEECCCCCCchHHHHHHHHHH--CCCEEE--EECCchhCCchH----HHCCCEE--Ec--------CHHHHhCCCCE
Confidence 7899877622 2233444444322 245543 333432111222 2456433 22 12344557788
Q ss_pred EEEeccc-------------------cccChhHHhhcCCCEEEEcCCCCCCCCC
Q 020508 208 LVLARYM-------------------QILSGKFLRSYGKDVINIHHGLLPSFKG 242 (325)
Q Consensus 208 iv~~g~~-------------------~il~~~~l~~~~~~~iNiHpslLP~yRG 242 (325)
+.. -|. +.+++++++..+ +-+|| ||.+||
T Consensus 209 vy~-~~~q~er~~~~~~~~~~~~~~~y~v~~~~l~~a~---i~mH~--lP~~Rg 256 (291)
T 3d6n_B 209 VIW-LRLQKERQKENYIPSESSYFKQFGLTKERFEKVK---LYMHP--GPVNRN 256 (291)
T ss_dssp EEE-CCCCTHHHHTTSSSCHHHHHHHHSBCHHHHTTCC---CEECS--SCCCBT
T ss_pred EEE-eCcccCccccccchhHHHHHhhcCcCHHHHHhcc---cccCC--CCCCCC
Confidence 877 442 355666666554 77999 899986
No 137
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}
Probab=60.80 E-value=45 Score=29.75 Aligned_cols=104 Identities=13% Similarity=0.159 Sum_probs=57.8
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCC
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 206 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 206 (325)
.++|+|++.|. |..+...+.. . +.+|. +.++. ..-.+.+.+.|+.+... .++.+.++++|
T Consensus 155 g~~v~IiG~G~iG~~~a~~l~~--~---G~~V~--~~dr~----~~~~~~~~~~g~~~~~~--------~~l~~~l~~aD 215 (293)
T 3d4o_A 155 GANVAVLGLGRVGMSVARKFAA--L---GAKVK--VGARE----SDLLARIAEMGMEPFHI--------SKAAQELRDVD 215 (293)
T ss_dssp TCEEEEECCSHHHHHHHHHHHH--T---TCEEE--EEESS----HHHHHHHHHTTSEEEEG--------GGHHHHTTTCS
T ss_pred CCEEEEEeeCHHHHHHHHHHHh--C---CCEEE--EEECC----HHHHHHHHHCCCeecCh--------hhHHHHhcCCC
Confidence 46899988765 4444443332 1 34543 33332 11123445677654311 12445566899
Q ss_pred EEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhC
Q 020508 207 FLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAG 253 (325)
Q Consensus 207 liv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G 253 (325)
+++++--..++.++.++..+.+.+=+.-+--|. +.. +.++-..|
T Consensus 216 vVi~~~p~~~i~~~~l~~mk~~~~lin~ar~~~--~~~-~~~a~~~G 259 (293)
T 3d4o_A 216 VCINTIPALVVTANVLAEMPSHTFVIDLASKPG--GTD-FRYAEKRG 259 (293)
T ss_dssp EEEECCSSCCBCHHHHHHSCTTCEEEECSSTTC--SBC-HHHHHHHT
T ss_pred EEEECCChHHhCHHHHHhcCCCCEEEEecCCCC--CCC-HHHHHHCC
Confidence 999987778888888888766544444444332 333 35554444
No 138
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=60.50 E-value=6.9 Score=31.41 Aligned_cols=77 Identities=9% Similarity=0.012 Sum_probs=37.0
Q ss_pred ecCCCCCceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHH-HCCCCEEEecCCCChhHHHHH
Q 020508 122 VPDIDPKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLE-RHGIPYHYLCAKENEREEELL 199 (325)
Q Consensus 122 ~~~~~~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~-~~gIp~~~~~~~~~~~~~~~~ 199 (325)
+|...+.++|+|++.|. |..+...+.. . +++|.++-.+++ . .+.+. +.|+.+...+ . .+.+.+
T Consensus 13 ~~~~~~~~~v~IiG~G~iG~~la~~L~~--~---g~~V~vid~~~~-----~-~~~~~~~~g~~~~~~d-~---~~~~~l 77 (155)
T 2g1u_A 13 MSKKQKSKYIVIFGCGRLGSLIANLASS--S---GHSVVVVDKNEY-----A-FHRLNSEFSGFTVVGD-A---AEFETL 77 (155)
T ss_dssp ----CCCCEEEEECCSHHHHHHHHHHHH--T---TCEEEEEESCGG-----G-GGGSCTTCCSEEEESC-T---TSHHHH
T ss_pred hhcccCCCcEEEECCCHHHHHHHHHHHh--C---CCeEEEEECCHH-----H-HHHHHhcCCCcEEEec-C---CCHHHH
Confidence 45555678999988764 4444444432 2 356654433221 1 22233 5677654322 1 112333
Q ss_pred HH--hcCCCEEEEecc
Q 020508 200 EL--VQNTDFLVLARY 213 (325)
Q Consensus 200 ~~--l~~~Dliv~~g~ 213 (325)
.. +.++|+++.+.-
T Consensus 78 ~~~~~~~ad~Vi~~~~ 93 (155)
T 2g1u_A 78 KECGMEKADMVFAFTN 93 (155)
T ss_dssp HTTTGGGCSEEEECSS
T ss_pred HHcCcccCCEEEEEeC
Confidence 32 347899888743
No 139
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=60.39 E-value=11 Score=31.95 Aligned_cols=70 Identities=11% Similarity=0.135 Sum_probs=37.2
Q ss_pred ceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHh--cCC
Q 020508 129 YKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELV--QNT 205 (325)
Q Consensus 129 ~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l--~~~ 205 (325)
|||+|++.|. |..+...|.. . +++++.+-.++ ..+.+++++.|+++...+ ..+++.++.. .++
T Consensus 1 M~iiIiG~G~~G~~la~~L~~--~---g~~v~vid~~~-----~~~~~l~~~~~~~~i~gd----~~~~~~l~~a~i~~a 66 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLS--R---KYGVVIINKDR-----ELCEEFAKKLKATIIHGD----GSHKEILRDAEVSKN 66 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHH--T---TCCEEEEESCH-----HHHHHHHHHSSSEEEESC----TTSHHHHHHHTCCTT
T ss_pred CEEEEECCCHHHHHHHHHHHh--C---CCeEEEEECCH-----HHHHHHHHHcCCeEEEcC----CCCHHHHHhcCcccC
Confidence 5788877654 4444433322 2 35665433222 234556677888886544 1123334333 378
Q ss_pred CEEEEec
Q 020508 206 DFLVLAR 212 (325)
Q Consensus 206 Dliv~~g 212 (325)
|+++++.
T Consensus 67 d~vi~~~ 73 (218)
T 3l4b_C 67 DVVVILT 73 (218)
T ss_dssp CEEEECC
T ss_pred CEEEEec
Confidence 8877764
No 140
>2w6k_A COBE; biosynthetic protein, cobalamin, complete proteome, vitamin B12; 1.70A {Pseudomonas aeruginosa} SCOP: c.151.1.1 PDB: 2bsn_A 2w6l_A
Probab=60.37 E-value=21 Score=29.17 Aligned_cols=67 Identities=16% Similarity=0.183 Sum_probs=38.0
Q ss_pred ecCCCCCceEEEEEeCCchH---HHHHHHH-hhcCCC-CceEEEEEeCCCCCCCchHHHHHHHCCCCEEEec
Q 020508 122 VPDIDPKYKVAVLASKQEHC---LVDFLYG-WQEGKL-PVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 122 ~~~~~~~~ri~v~~Sg~g~~---l~~Ll~~-~~~~~l-~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~ 188 (325)
++...+++-++=++...|.. +...++. ++...+ ...|.++.|-..+.....+.++|+++|+|+..++
T Consensus 4 ~~~~~p~~lvvGIGcrrg~~~~~i~~ai~~aL~~~~l~~~~v~~latid~K~dE~gL~~~A~~lg~pl~~~~ 75 (145)
T 2w6k_A 4 MPLPIPSLLIAGIGCRRGCSAEHLRALLERTLGEHGRSLAELDALASIDGKRDEPGLRQLATLLERPVHFLA 75 (145)
T ss_dssp CCCCCCCCEEEEEEECTTCCHHHHHHHHHHHHHHTTCCGGGCCEEEEECSSSCCHHHHHHHHHHTSCEEEEC
T ss_pred cccccCCeEEEEEeeCCCCCHHHHHHHHHHHHHHcCCCHHHcceEechHHhCCCHHHHHHHHHhCCCcEEeC
Confidence 44444544344444555643 3333332 333333 2456666664443335679999999999999886
No 141
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=60.34 E-value=17 Score=35.26 Aligned_cols=61 Identities=11% Similarity=0.064 Sum_probs=43.8
Q ss_pred eEEEEEEcC---CCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhh
Q 020508 42 HGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF 113 (325)
Q Consensus 42 ~~~ltv~g~---DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l 113 (325)
-..++++|. .+||+.+++-+.|++.|+||.-++|-.. .-. +.+-+++ ++..+++..+-+.|
T Consensus 374 vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIsqgtS----ei~--Is~vV~~-----~d~~~Av~aLH~~f 437 (446)
T 3tvi_A 374 MALVATVGTGMAKTKGIANKIFTALSKENVNIRMIDQGSS----EIN--VIVGVET-----VDFEKAVKSIYNAF 437 (446)
T ss_dssp EEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEEECSC----TTE--EEEEEEG-----GGHHHHHHHHHHHH
T ss_pred eEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEEEecCC----Cce--EEEEEcH-----HHHHHHHHHHHHHH
Confidence 458899997 5999999999999999999998886321 222 3333333 55666776666655
No 142
>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1
Probab=60.13 E-value=32 Score=31.49 Aligned_cols=74 Identities=23% Similarity=0.283 Sum_probs=41.9
Q ss_pred CCceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHh--c
Q 020508 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELV--Q 203 (325)
Q Consensus 127 ~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l--~ 203 (325)
+++||+++++|. |..+...+.. +.+ +.++++|+...+ .....++|+++|++... . .-+++++.- .
T Consensus 3 ~~irVaIIG~G~iG~~~~~~l~~-~~~--~~elvav~d~~~---~~~~~~~a~~~g~~~~~-~-----~~e~ll~~~~~~ 70 (312)
T 1nvm_B 3 QKLKVAIIGSGNIGTDLMIKVLR-NAK--YLEMGAMVGIDA---ASDGLARAQRMGVTTTY-A-----GVEGLIKLPEFA 70 (312)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHH-HCS--SEEEEEEECSCT---TCHHHHHHHHTTCCEES-S-----HHHHHHHSGGGG
T ss_pred CCCEEEEEcCcHHHHHHHHHHHh-hCc--CeEEEEEEeCCh---hhhHHHHHHHcCCCccc-C-----CHHHHHhccCCC
Confidence 468999999875 4443333321 022 478887776442 23367889999998531 1 112343321 2
Q ss_pred CCCEEEEec
Q 020508 204 NTDFLVLAR 212 (325)
Q Consensus 204 ~~Dliv~~g 212 (325)
++|+++.+.
T Consensus 71 ~iDvV~~at 79 (312)
T 1nvm_B 71 DIDFVFDAT 79 (312)
T ss_dssp GEEEEEECS
T ss_pred CCcEEEECC
Confidence 567777763
No 143
>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*
Probab=59.73 E-value=39 Score=30.91 Aligned_cols=156 Identities=14% Similarity=0.085 Sum_probs=82.3
Q ss_pred hHHHHHHHHHhcCCeEeEeeeeccCCC---CeEE--EEEEEEeCCCCCChHHHHHHHHhhhhhhcccceeeeecCCCCCc
Q 020508 55 IVAKLSECIASRGGNILAADVFVPEKK---NVFY--SRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKY 129 (325)
Q Consensus 55 IVa~Vt~~La~~giNI~~l~~~~~~~~---g~F~--~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~~~~~ 129 (325)
-+++.+++|... ++++-+.......- ..+. -.+-..... ...+.|.-.+|--+-+.+|- -+.+
T Consensus 83 sl~DTarvls~~-~D~iviR~~~~~~~~~la~~~~vPVINaG~g~-~~HPtQ~LaDl~Ti~e~~g~----------l~gl 150 (299)
T 1pg5_A 83 NLADTIRMLNNY-SDGIVMRHKYDGASRFASEISDIPVINAGDGK-HEHPTQAVIDIYTINKHFNT----------IDGL 150 (299)
T ss_dssp CHHHHHHHHHHH-CSEEEEEESSBTHHHHHHHHCSSCEEEEEETT-TBCHHHHHHHHHHHHHHHSC----------STTC
T ss_pred CHHHHHHHHHHh-CCEEEEeCCChhHHHHHHHhCCCCEEeCCCCC-CcCcHHHHHHHHHHHHHhCC----------cCCc
Confidence 566666666666 46665555321000 0010 012221212 34455555555555544431 1347
Q ss_pred eEEEEEeCC-chHHHHHHHHhhcCCC-CceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCCE
Q 020508 130 KVAVLASKQ-EHCLVDFLYGWQEGKL-PVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDF 207 (325)
Q Consensus 130 ri~v~~Sg~-g~~l~~Ll~~~~~~~l-~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dl 207 (325)
||++++-+. +.....++..+. .+ +.++. ++.|+..... ..++++.|..+..... +.+.++++|+
T Consensus 151 ~va~vGD~~~~rva~Sl~~~~~--~~~g~~v~--~~~P~~~~~~--~~~~~~~g~~~~~~~d--------~~eav~~aDv 216 (299)
T 1pg5_A 151 VFALLGDLKYARTVNSLLRILT--RFRPKLVY--LISPQLLRAR--KEILDELNYPVKEVEN--------PFEVINEVDV 216 (299)
T ss_dssp EEEEEECCSSCHHHHHHHHHGG--GSCCSEEE--EECCGGGCCC--HHHHTTCCSCEEEESC--------GGGTGGGCSE
T ss_pred EEEEECCCCCCchHHHHHHHHH--hCCCCEEE--EECCchhcCC--HHHHHHcCCeEEEeCC--------HHHHhcCCCE
Confidence 899988764 344556666543 23 45643 3334321111 2236678888755431 1233457788
Q ss_pred EEEeccc----------------cccChhHHhhcCCCEEEEcCCC
Q 020508 208 LVLARYM----------------QILSGKFLRSYGKDVINIHHGL 236 (325)
Q Consensus 208 iv~~g~~----------------~il~~~~l~~~~~~~iNiHpsl 236 (325)
+..-.|. +.+++++++..+..++-+||.+
T Consensus 217 vyt~~~q~er~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~lP 261 (299)
T 1pg5_A 217 LYVTRIQKERFVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPLP 261 (299)
T ss_dssp EEEECCCSTTSSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCSC
T ss_pred EEeCCcccccccCHHHHHHhhcCcccCHHHHHhcCCCCEEECCCC
Confidence 8777663 4577788887777899999976
No 144
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=59.54 E-value=21 Score=27.17 Aligned_cols=72 Identities=8% Similarity=-0.001 Sum_probs=35.2
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHH-hcCC
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLEL-VQNT 205 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~-l~~~ 205 (325)
.+||+|++.|. |..+...|.. . ++++.. +... ...+.++.+++|+.+...+ . ...+.+.+. +.++
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~--~---g~~v~~-~d~~----~~~~~~~~~~~~~~~~~~d-~--~~~~~l~~~~~~~~ 70 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSE--K---GHDIVL-IDID----KDICKKASAEIDALVINGD-C--TKIKTLEDAGIEDA 70 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHH--T---TCEEEE-EESC----HHHHHHHHHHCSSEEEESC-T--TSHHHHHHTTTTTC
T ss_pred CCEEEEECCCHHHHHHHHHHHh--C---CCeEEE-EECC----HHHHHHHHHhcCcEEEEcC-C--CCHHHHHHcCcccC
Confidence 36898887654 4443333322 2 356553 3322 1234445556788765433 1 111222222 3478
Q ss_pred CEEEEec
Q 020508 206 DFLVLAR 212 (325)
Q Consensus 206 Dliv~~g 212 (325)
|+++++-
T Consensus 71 d~vi~~~ 77 (140)
T 1lss_A 71 DMYIAVT 77 (140)
T ss_dssp SEEEECC
T ss_pred CEEEEee
Confidence 9988873
No 145
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=59.46 E-value=17 Score=35.34 Aligned_cols=62 Identities=16% Similarity=0.093 Sum_probs=42.5
Q ss_pred EEEEEEcC---CCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcc
Q 020508 43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (325)
Q Consensus 43 ~~ltv~g~---DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~ 115 (325)
.+++++|. ++||+.+++-+.|++.|+||.-++|.. + .-.+.+.+ +. ++..+++..+-+.|..
T Consensus 405 a~vsvVG~gm~~~~Gvaak~f~aL~~~~InI~misqgt---S-e~~Is~vV--~~-----~d~~~Av~aLh~~f~~ 469 (473)
T 3c1m_A 405 CVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGS---S-EVNISFVI--DE-----KDLLNCVRKLHEKFIE 469 (473)
T ss_dssp EEEEEECTTTTTCTTHHHHHHHHHHHHTCCCCEEEESS---C-SSEEEEEE--EG-----GGHHHHHHHHHHHHTT
T ss_pred EEEEEEecCCCCChhHHHHHHHHHHHCCCCEEEEecCC---C-CceEEEEE--cH-----HHHHHHHHHHHHHHhc
Confidence 45889997 599999999999999999997666522 2 22223333 32 4566677766666643
No 146
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=58.83 E-value=25 Score=32.04 Aligned_cols=60 Identities=13% Similarity=0.098 Sum_probs=39.4
Q ss_pred CceEEEEEeCCc--hHHHHHHHHhhcCCCCce-EEEEEeCCCCCCC-----chHHHHHHHCCCCEEEec
Q 020508 128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVE-ITCVISNHDRGPN-----SHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 128 ~~ri~v~~Sg~g--~~l~~Ll~~~~~~~l~~~-I~~Vvt~~~~~~~-----~~~~~~a~~~gIp~~~~~ 188 (325)
..||+|..||.. +++-.++...+ ..++.+ +.+|..++.-... ..+.++|+++|||++..+
T Consensus 24 ~~~vlva~SGG~DS~~Ll~ll~~~~-~~~g~~~v~av~vd~g~r~~s~~~~~~v~~~a~~lgi~~~v~~ 91 (317)
T 1wy5_A 24 ERRVLIAFSGGVDSVVLTDVLLKLK-NYFSLKEVALAHFNHMLRESAERDEEFCKEFAKERNMKIFVGK 91 (317)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHST-TTTTCSEEEEEEEECCSSTHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCEEEEEecchHHHHHHHHHHHHHH-HHcCCCEEEEEEEECCCCcccHHHHHHHHHHHHHcCCcEEEEE
Confidence 458999999863 45555555432 234567 7777777642211 337889999999998775
No 147
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A
Probab=57.21 E-value=33 Score=32.03 Aligned_cols=157 Identities=10% Similarity=0.123 Sum_probs=84.8
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCC
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 206 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 206 (325)
.++|+|++-|. |..+...+.. .+.+|. +.++.. .+ .+.+.+.|+.. .. ++.+.++++|
T Consensus 164 gktvGIIG~G~IG~~vA~~l~~-----~G~~V~--~~dr~~---~~-~~~~~~~g~~~--~~--------~l~ell~~aD 222 (351)
T 3jtm_A 164 GKTIGTVGAGRIGKLLLQRLKP-----FGCNLL--YHDRLQ---MA-PELEKETGAKF--VE--------DLNEMLPKCD 222 (351)
T ss_dssp TCEEEEECCSHHHHHHHHHHGG-----GCCEEE--EECSSC---CC-HHHHHHHCCEE--CS--------CHHHHGGGCS
T ss_pred CCEEeEEEeCHHHHHHHHHHHH-----CCCEEE--EeCCCc---cC-HHHHHhCCCeE--cC--------CHHHHHhcCC
Confidence 46899988775 5555554433 245643 233321 11 34556667633 21 2445566899
Q ss_pred EEEEecc-----ccccChhHHhhcCCCEEEEcCCCCCCCCCC----cHHHHHHHhCCcEeEE--EEEEecCCCCCCCeEE
Q 020508 207 FLVLARY-----MQILSGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQAFDAGVKLIGA--TSHFVTEELDAGPIIE 275 (325)
Q Consensus 207 liv~~g~-----~~il~~~~l~~~~~~~iNiHpslLP~yRG~----~pi~~ai~~G~~~~Gv--Tvh~v~~~~D~G~Ii~ 275 (325)
++++.-- ..++..+.++..+.+.+=+.-| ||. ..+..|+.+|. ..|+ -++.-+.--..-|.+.
T Consensus 223 vV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a-----RG~~vde~aL~~aL~~g~-i~ga~lDV~~~EP~~~~~pL~~ 296 (351)
T 3jtm_A 223 VIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNA-----RGAIMERQAVVDAVESGH-IGGYSGDVWDPQPAPKDHPWRY 296 (351)
T ss_dssp EEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECS-----CGGGBCHHHHHHHHHHTS-EEEEEESCCSSSSCCTTCGGGT
T ss_pred EEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECc-----CchhhCHHHHHHHHHhCC-ccEEEeCCCCCCCCCCCChhhc
Confidence 9998743 3588999999988775555444 554 45677888874 4444 3433332222223333
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCc
Q 020508 276 QMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELR 313 (325)
Q Consensus 276 Q~~~~I~~~dt~~~l~~r~~~~~~~ll~~al~~i~~g~ 313 (325)
-..+-+.|.-...+...+ ..-...+.+.+..+.+|+
T Consensus 297 ~~nvilTPHia~~t~ea~--~~~~~~~~~nl~~~~~g~ 332 (351)
T 3jtm_A 297 MPNQAMTPHTSGTTIDAQ--LRYAAGTKDMLERYFKGE 332 (351)
T ss_dssp STTBCCCCSCGGGSHHHH--HHHHHHHHHHHHHHHHTC
T ss_pred CCCEEECCcCCCCCHHHH--HHHHHHHHHHHHHHHcCC
Confidence 334445554322222211 222334556666777776
No 148
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Probab=56.83 E-value=15 Score=35.02 Aligned_cols=51 Identities=14% Similarity=0.220 Sum_probs=30.9
Q ss_pred CCCceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCC
Q 020508 126 DPKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIP 183 (325)
Q Consensus 126 ~~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp 183 (325)
.+++||+|++.|. |. ..++..+... -+.++++|+... .....++++++|++
T Consensus 81 ~~~irigiIG~G~~g~--~~~~~~l~~~-~~~~lvav~d~~----~~~~~~~a~~~g~~ 132 (433)
T 1h6d_A 81 DRRFGYAIVGLGKYAL--NQILPGFAGC-QHSRIEALVSGN----AEKAKIVAAEYGVD 132 (433)
T ss_dssp CCCEEEEEECCSHHHH--HTHHHHTTTC-SSEEEEEEECSC----HHHHHHHHHHTTCC
T ss_pred CCceEEEEECCcHHHH--HHHHHHHhhC-CCcEEEEEEcCC----HHHHHHHHHHhCCC
Confidence 3568999988764 22 1233333321 147888876543 23467788999997
No 149
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=56.73 E-value=11 Score=30.69 Aligned_cols=62 Identities=16% Similarity=0.172 Sum_probs=41.0
Q ss_pred eEEEEEEcC---CCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhccc
Q 020508 42 HGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (325)
Q Consensus 42 ~~~ltv~g~---DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~ 116 (325)
-..++++|. ++||+.+++-+.|+ |+||.-++|... . .. +.+-+++ ++..+++..+-+.|..+
T Consensus 88 ~a~vsvvG~gm~~~~gv~a~~f~aL~--~Ini~~isqg~S---e-~~--is~vv~~-----~d~~~a~~~Lh~~f~~~ 152 (157)
T 3mah_A 88 MVIICIVGDMEWDNVGFEARIINALK--GVPVRMISYGGS---N-YN--VSVLVKA-----EDKKKALIALSNKLFNS 152 (157)
T ss_dssp EEEEEEEC------CCHHHHHHHTTT--TSCCSEEEECSS---S-SC--EEEEEEG-----GGHHHHHHHHHHHHHC-
T ss_pred eEEEEEECCCcccCccHHHHHHHHhC--CCCeEEEeeCCC---C-CE--EEEEEcH-----HHHHHHHHHHHHHHhcc
Confidence 457889997 68999999999999 999998887322 1 12 3333333 55677777777777655
No 150
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=56.57 E-value=40 Score=26.05 Aligned_cols=37 Identities=16% Similarity=0.198 Sum_probs=22.3
Q ss_pred CCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCC
Q 020508 127 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHD 166 (325)
Q Consensus 127 ~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~ 166 (325)
.++|++++++|. ..+.+++.++... +.++++++.+.+
T Consensus 3 ~~~~vlIiGaG~--~g~~l~~~l~~~~-g~~vvg~~d~~~ 39 (141)
T 3nkl_A 3 AKKKVLIYGAGS--AGLQLANMLRQGK-EFHPIAFIDDDR 39 (141)
T ss_dssp CCEEEEEECCSH--HHHHHHHHHHHSS-SEEEEEEECSCG
T ss_pred CCCEEEEECCCH--HHHHHHHHHHhCC-CcEEEEEEECCc
Confidence 467888877654 3334444433322 589999987553
No 151
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=55.34 E-value=90 Score=27.75 Aligned_cols=107 Identities=13% Similarity=0.125 Sum_probs=52.1
Q ss_pred CCCceEEEEEeCCc--hHHHHHHHHhhcCCCC-ceEEEEEeCCCCCCCchHHHHHHHCCCCE-EEecC--C-CChh----
Q 020508 126 DPKYKVAVLASKQE--HCLVDFLYGWQEGKLP-VEITCVISNHDRGPNSHVIRFLERHGIPY-HYLCA--K-ENER---- 194 (325)
Q Consensus 126 ~~~~ri~v~~Sg~g--~~l~~Ll~~~~~~~l~-~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~-~~~~~--~-~~~~---- 194 (325)
.++|||++++...+ .....++..+++. -+ +++..+++... .....+..+.+|+++ +.+.. . ....
T Consensus 6 ~~~mkIl~v~~~~~~~~~~~~l~~~L~~~-~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (375)
T 3beo_A 6 TERLKVMTIFGTRPEAIKMAPLVLELQKH-PEKIESIVTVTAQH---RQMLDQVLSIFGITPDFDLNIMKDRQTLIDITT 81 (375)
T ss_dssp SSCEEEEEEECSHHHHHHHHHHHHHHTTC-TTTEEEEEEECCSS---SHHHHHHHHHHTCCCSEECCCCCTTCCHHHHHH
T ss_pred CcCceEEEEecCcHHHHHHHHHHHHHHhC-CCCCCeEEEEcCCC---HHHHHHHHHHcCCCCccccccCCCcccHHHHHH
Confidence 34689998874332 2345566665443 12 66665555432 112334445577765 22221 1 1110
Q ss_pred --HHHHHHHhc--CCCEEEEecc--ccccChhHHhhcCCCEEEEcCCC
Q 020508 195 --EEELLELVQ--NTDFLVLARY--MQILSGKFLRSYGKDVINIHHGL 236 (325)
Q Consensus 195 --~~~~~~~l~--~~Dliv~~g~--~~il~~~~l~~~~~~~iNiHpsl 236 (325)
-..+.+.++ +||++++.+. ..++..-.....+..++..|.+.
T Consensus 82 ~~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~~~~~~ip~v~~~~~~ 129 (375)
T 3beo_A 82 RGLEGLDKVMKEAKPDIVLVHGDTTTTFIASLAAFYNQIPVGHVEAGL 129 (375)
T ss_dssp HHHHHHHHHHHHHCCSEEEEETTSHHHHHHHHHHHHTTCCEEEESCCC
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEeccc
Confidence 012444554 8999999653 11111111123345677777765
No 152
>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A
Probab=54.78 E-value=39 Score=32.09 Aligned_cols=155 Identities=12% Similarity=0.168 Sum_probs=84.2
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCC
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 206 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 206 (325)
.++|+|++-|. |..+...+.. .+.+|. +.++.. . . .+.+.+.|+.+. . ++.+.++++|
T Consensus 191 gktvGIIGlG~IG~~vA~~l~a-----~G~~V~--~~d~~~--~-~-~~~~~~~G~~~~--~--------~l~ell~~aD 249 (393)
T 2nac_A 191 AMHVGTVAAGRIGLAVLRRLAP-----FDVHLH--YTDRHR--L-P-ESVEKELNLTWH--A--------TREDMYPVCD 249 (393)
T ss_dssp TCEEEEECCSHHHHHHHHHHGG-----GTCEEE--EECSSC--C-C-HHHHHHHTCEEC--S--------SHHHHGGGCS
T ss_pred CCEEEEEeECHHHHHHHHHHHh-----CCCEEE--EEcCCc--c-c-hhhHhhcCceec--C--------CHHHHHhcCC
Confidence 46899987765 5555444432 245654 333321 0 1 345666776532 1 1334566899
Q ss_pred EEEEecc-----ccccChhHHhhcCCCEEEEcCCCCCCCCCC----cHHHHHHHhCCcEeEEEEEEecCC--CCCCCeEE
Q 020508 207 FLVLARY-----MQILSGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQAFDAGVKLIGATSHFVTEE--LDAGPIIE 275 (325)
Q Consensus 207 liv~~g~-----~~il~~~~l~~~~~~~iNiHpslLP~yRG~----~pi~~ai~~G~~~~GvTvh~v~~~--~D~G~Ii~ 275 (325)
++++.-- ..++..+.++..+.+.+=+.-| ||. ..+..|+.+| +..|.-+-....+ ...-|.+.
T Consensus 250 vV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a-----RG~~vde~aL~~aL~~g-~i~gA~lDV~~~EP~~~~~pL~~ 323 (393)
T 2nac_A 250 VVTLNCPLHPETEHMINDETLKLFKRGAYIVNTA-----RGKLCDRDAVARALESG-RLAGYAGDVWFPQPAPKDHPWRT 323 (393)
T ss_dssp EEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECS-----CGGGBCHHHHHHHHHTT-SEEEEEESCCSSSSCCTTCGGGT
T ss_pred EEEEecCCchHHHHHhhHHHHhhCCCCCEEEECC-----CchHhhHHHHHHHHHcC-CeeEEEEEecCCCCCCCCChhHc
Confidence 9998743 4678888888888775555555 664 3577888887 4555544444433 12223333
Q ss_pred EEEEeCCCCCCHHH--HHHHHHHHHHHHHHHHHHHHHhCc
Q 020508 276 QMVERVSHRDNLRT--FVQKSEDVEKQCLAKAIKSYCELR 313 (325)
Q Consensus 276 Q~~~~I~~~dt~~~--l~~r~~~~~~~ll~~al~~i~~g~ 313 (325)
...+-+.|.....+ -.+++ ...+.+.+..+.+|+
T Consensus 324 ~~nvilTPHia~~T~e~~~~~----~~~~~~nl~~~~~G~ 359 (393)
T 2nac_A 324 MPYNGMTPHISGTTLTAQARY----AAGTREILECFFEGR 359 (393)
T ss_dssp STTBCCCCSCTTCSHHHHHHH----HHHHHHHHHHHHHTC
T ss_pred CCCEEECCCCCcCcHHHHHHH----HHHHHHHHHHHHcCC
Confidence 33444555432222 22333 334445566666664
No 153
>2cwd_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, structural genomics; 1.90A {Thermus thermophilus}
Probab=54.37 E-value=28 Score=28.53 Aligned_cols=81 Identities=12% Similarity=0.108 Sum_probs=45.9
Q ss_pred CCceEEEEEeCCc--hHHHH-HHHHhhc-CCC--CceEEEEEeCC---CCCCCchHHHHHHHCCCCEEEec-CCCChhHH
Q 020508 127 PKYKVAVLASKQE--HCLVD-FLYGWQE-GKL--PVEITCVISNH---DRGPNSHVIRFLERHGIPYHYLC-AKENEREE 196 (325)
Q Consensus 127 ~~~ri~v~~Sg~g--~~l~~-Ll~~~~~-~~l--~~~I~~Vvt~~---~~~~~~~~~~~a~~~gIp~~~~~-~~~~~~~~ 196 (325)
+++||.|+.+|+- |.+.+ ++..... ..+ ..+|.---+.+ ..+.+....+.++++||++. .. +.. .+
T Consensus 3 ~~~~VLFVC~gN~cRSpmAEal~~~~~~~~gl~~~~~v~SAGt~~~~~g~~~~p~a~~~l~e~Gid~s-~~ar~l--~~- 78 (161)
T 2cwd_A 3 RPVRVLFVCLGNICRSPMAEGIFRKLLKERGLEDRFEVDSAGTGAWHVGEPMDPRARRVLEEEGAYFP-HVARRL--TR- 78 (161)
T ss_dssp CCEEEEEEESSSSSHHHHHHHHHHHHHHHHTCTTTEEEEEEESSCTTTTCCCCHHHHHHHHHHTCCCC-CCCCBC--CH-
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHHHHHHcCCCCcEEEEecccCCCccCCCCCHHHHHHHHHcCcCcc-ccccCC--CH-
Confidence 5789999999874 55543 5554321 112 23333222222 22345668889999999986 33 222 11
Q ss_pred HHHHHhcCCCEEEEeccc
Q 020508 197 ELLELVQNTDFLVLARYM 214 (325)
Q Consensus 197 ~~~~~l~~~Dliv~~g~~ 214 (325)
+. +..+|+|+...-.
T Consensus 79 ~~---~~~~DlIi~M~~~ 93 (161)
T 2cwd_A 79 ED---VLAYDHILVMDRE 93 (161)
T ss_dssp HH---HHHCSEEEESSHH
T ss_pred hH---hccCCEEEECChH
Confidence 11 2268999998653
No 154
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A
Probab=53.91 E-value=66 Score=29.70 Aligned_cols=119 Identities=12% Similarity=0.169 Sum_probs=68.9
Q ss_pred CChHHHHHHHHhhhhhhcccceeeeecCCCCCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCC-CchHH-
Q 020508 97 WPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP-NSHVI- 174 (325)
Q Consensus 97 ~~~~~L~~~l~~l~~~l~~~~~~~~~~~~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~-~~~~~- 174 (325)
..+.|.-.+|--+-+.+|- -+.+||++++-++ .....++..+. .++.++. ++.|+... +..+.
T Consensus 134 ~HPtQaLaDl~Ti~e~~g~----------l~gl~va~vGD~~-~va~Sl~~~~~--~~G~~v~--~~~P~~~~~~~~~~~ 198 (321)
T 1oth_A 134 YHPIQILADYLTLQEHYSS----------LKGLTLSWIGDGN-NILHSIMMSAA--KFGMHLQ--AATPKGYEPDASVTK 198 (321)
T ss_dssp CCHHHHHHHHHHHHHHHSC----------CTTCEEEEESCSS-HHHHHHHTTTG--GGTCEEE--EECCTTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHHhCC----------cCCcEEEEECCch-hhHHHHHHHHH--HcCCeEE--EECCccccCCHHHHH
Confidence 4455555555555444431 1357999977654 33455555432 2356653 33343321 33333
Q ss_pred ---HHHHHCCCCEEEecCCCChhHHHHHHHhcCCCEEEEecc-----------------ccccChhHHhhcCCCEEEEcC
Q 020508 175 ---RFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARY-----------------MQILSGKFLRSYGKDVINIHH 234 (325)
Q Consensus 175 ---~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dliv~~g~-----------------~~il~~~~l~~~~~~~iNiHp 234 (325)
+.|++.|..+.... ++.+.++++|++..-.| .+.+.+++++..+..++-+||
T Consensus 199 ~~~~~a~~~G~~~~~~~--------d~~eav~~aDvvy~d~w~s~g~e~~~~~~~~~~~~y~v~~~~l~~a~~dai~mH~ 270 (321)
T 1oth_A 199 LAEQYAKENGTKLLLTN--------DPLEAAHGGNVLITDTWISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHC 270 (321)
T ss_dssp HHHHHHHHHTCCEEEES--------CHHHHHTTCSEEEECCSSCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEEC
T ss_pred HHHHHHHHcCCeEEEEE--------CHHHHhccCCEEEEeccccccchhhhHHHHHhccCceECHHHHhhcCCCCEEECC
Confidence 44557887776543 13455668999888332 256788888888778999998
Q ss_pred CCCCCC
Q 020508 235 GLLPSF 240 (325)
Q Consensus 235 slLP~y 240 (325)
. |.+
T Consensus 271 l--P~~ 274 (321)
T 1oth_A 271 L--PRK 274 (321)
T ss_dssp S--CCC
T ss_pred C--CCC
Confidence 5 455
No 155
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=53.77 E-value=50 Score=30.08 Aligned_cols=55 Identities=13% Similarity=0.041 Sum_probs=34.1
Q ss_pred CCCCceEEEEEeCC-ch--HHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEec
Q 020508 125 IDPKYKVAVLASKQ-EH--CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 125 ~~~~~ri~v~~Sg~-g~--~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~ 188 (325)
...+|||+++..+. |+ .+..|.+.+++. +++|.. ++.+ ...+..++.|+++..++
T Consensus 17 ~~~~MrIl~~~~~~~Gh~~~~~~la~~L~~~--GheV~v-~~~~------~~~~~~~~~g~~~~~~~ 74 (412)
T 3otg_A 17 EGRHMRVLFASLGTHGHTYPLLPLATAARAA--GHEVTF-ATGE------GFAGTLRKLGFEPVATG 74 (412)
T ss_dssp -CCSCEEEEECCSSHHHHGGGHHHHHHHHHT--TCEEEE-EECG------GGHHHHHHTTCEEEECC
T ss_pred ccceeEEEEEcCCCcccHHHHHHHHHHHHHC--CCEEEE-EccH------HHHHHHHhcCCceeecC
Confidence 34578999887654 32 234455555443 578654 4433 23677788999998776
No 156
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Probab=53.60 E-value=42 Score=32.10 Aligned_cols=159 Identities=8% Similarity=0.101 Sum_probs=83.8
Q ss_pred HHHHHHHHhcCCeEeEeeeeccCC-CCeE---EEEEEEEeCCCCCChHHHHHHHHhhhhhhcccceeeeecCCCCCceEE
Q 020508 57 AKLSECIASRGGNILAADVFVPEK-KNVF---YSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVA 132 (325)
Q Consensus 57 a~Vt~~La~~giNI~~l~~~~~~~-~g~F---~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~~~~~ri~ 132 (325)
.++++.|.+.|+..++++.-.+.. .+.+ ..+.++ ........+...+..-+++.-. ..+. -++.||+
T Consensus 124 ~~l~~~l~~~~it~ia~E~i~r~~ra~~l~~ls~~s~i------AGy~Av~~aa~~l~~~~~~l~t--~~g~-v~~~kV~ 194 (405)
T 4dio_A 124 EEAISAMAGAGLTTFAMELMPRITRAQSMDVLSSQANL------AGYQAVIDAAYEYDRALPMMMT--AAGT-VPAAKIF 194 (405)
T ss_dssp HHHHHHHHHTTCEEEEGGGSCCSGGGGGGCHHHHHHHH------HHHHHHHHHHHHCSSCSSCEEE--TTEE-ECCCEEE
T ss_pred HHHHHHHHHCCCeEEEeeccccccccCccceecchhHH------HHHHHHHHHHHHhHhhhchhhc--cCCC-cCCCEEE
Confidence 578999999999998887732111 0111 100000 0012233344444444432211 0111 1357999
Q ss_pred EEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCC----------CC---------
Q 020508 133 VLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK----------EN--------- 192 (325)
Q Consensus 133 v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~----------~~--------- 192 (325)
|++.|. |.....++..+ +++|. +.+.. ..-.+.++++|.++...+.. +.
T Consensus 195 ViG~G~iG~~aa~~a~~l-----Ga~V~--v~D~~----~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~ 263 (405)
T 4dio_A 195 VMGAGVAGLQAIATARRL-----GAVVS--ATDVR----PAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQV 263 (405)
T ss_dssp EECCSHHHHHHHHHHHHT-----TCEEE--EECSS----TTHHHHHHHTTCEECCCCC-----------------CHHHH
T ss_pred EECCcHHHHHHHHHHHHC-----CCEEE--EEcCC----HHHHHHHHHcCCceeecccccccccccccchhhhcchhhhh
Confidence 988875 55555555442 46543 34442 12356777788765332100 00
Q ss_pred hhHHHHHHHhcCCCEEEEec------cccccChhHHhhcCCCEEEEcCC
Q 020508 193 EREEELLELVQNTDFLVLAR------YMQILSGKFLRSYGKDVINIHHG 235 (325)
Q Consensus 193 ~~~~~~~~~l~~~Dliv~~g------~~~il~~~~l~~~~~~~iNiHps 235 (325)
.....+.+.++++|+++.+- -..+++++.++..+.+.+-+=-|
T Consensus 264 ~~~~~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA 312 (405)
T 4dio_A 264 KQAALVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLA 312 (405)
T ss_dssp HHHHHHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETT
T ss_pred hhHhHHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEe
Confidence 01124555666999999762 34688999999988775544433
No 157
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}
Probab=53.29 E-value=26 Score=32.35 Aligned_cols=35 Identities=9% Similarity=0.116 Sum_probs=20.3
Q ss_pred CCCceEEEEEeCC-chH-HHHHHHHhhcCCCCceEEEEEeC
Q 020508 126 DPKYKVAVLASKQ-EHC-LVDFLYGWQEGKLPVEITCVISN 164 (325)
Q Consensus 126 ~~~~ri~v~~Sg~-g~~-l~~Ll~~~~~~~l~~~I~~Vvt~ 164 (325)
.+++||+|++.|. |.. ....+.. .+ +.++++|+..
T Consensus 5 ~~~~rvgiiG~G~~g~~~~~~~l~~--~~--~~~l~av~d~ 41 (364)
T 3e82_A 5 NNTINIALIGYGFVGKTFHAPLIRS--VP--GLNLAFVASR 41 (364)
T ss_dssp --CEEEEEECCSHHHHHTHHHHHHT--ST--TEEEEEEECS
T ss_pred CCcceEEEECCCHHHHHHHHHHHhh--CC--CeEEEEEEcC
Confidence 3578999999875 332 2333332 12 4788887754
No 158
>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}
Probab=53.15 E-value=9 Score=34.85 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=19.9
Q ss_pred CCceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeC
Q 020508 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISN 164 (325)
Q Consensus 127 ~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~ 164 (325)
+|+||+|++.|. |..+ +..++.. .+.++++|+..
T Consensus 8 ~~irv~IIG~G~iG~~~---~~~l~~~-~~~elvav~d~ 42 (304)
T 3bio_A 8 KKIRAAIVGYGNIGRYA---LQALREA-PDFEIAGIVRR 42 (304)
T ss_dssp CCEEEEEECCSHHHHHH---HHHHHHC-TTEEEEEEECC
T ss_pred CCCEEEEECChHHHHHH---HHHHhcC-CCCEEEEEEcC
Confidence 368999998875 4433 3332221 14788887643
No 159
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A
Probab=53.02 E-value=86 Score=28.57 Aligned_cols=153 Identities=16% Similarity=0.152 Sum_probs=79.1
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCC
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 206 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 206 (325)
.+||+|++.|. |..+...+.. . +++|.++-.++++ .+.+.+.|+.+. + +.+.++++|
T Consensus 155 g~~vgIIG~G~iG~~iA~~l~~--~---G~~V~~~d~~~~~------~~~~~~~g~~~~--~---------l~e~l~~aD 212 (330)
T 2gcg_A 155 QSTVGIIGLGRIGQAIARRLKP--F---GVQRFLYTGRQPR------PEEAAEFQAEFV--S---------TPELAAQSD 212 (330)
T ss_dssp TCEEEEECCSHHHHHHHHHHGG--G---TCCEEEEESSSCC------HHHHHTTTCEEC--C---------HHHHHHHCS
T ss_pred CCEEEEECcCHHHHHHHHHHHH--C---CCEEEEECCCCcc------hhHHHhcCceeC--C---------HHHHHhhCC
Confidence 46899988765 5555444432 2 3565433222211 233455665331 1 223445789
Q ss_pred EEEEecc-----ccccChhHHhhcCCCEEEEcCCCCCCCCCC----cHHHHHHHhCCcEeEEEEEEecCC-CCCC-CeEE
Q 020508 207 FLVLARY-----MQILSGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQAFDAGVKLIGATSHFVTEE-LDAG-PIIE 275 (325)
Q Consensus 207 liv~~g~-----~~il~~~~l~~~~~~~iNiHpslLP~yRG~----~pi~~ai~~G~~~~GvTvh~v~~~-~D~G-~Ii~ 275 (325)
+++++-- ..++..++++..+.+.+=+.-| ||. ..+..++.+| ...|+.+++...+ +..+ +++.
T Consensus 213 vVi~~vp~~~~t~~~i~~~~~~~mk~gailIn~s-----rg~~v~~~aL~~aL~~~-~i~ga~lDv~~~epl~~~~~l~~ 286 (330)
T 2gcg_A 213 FIVVACSLTPATEGLCNKDFFQKMKETAVFINIS-----RGDVVNQDDLYQALASG-KIAAAGLDVTSPEPLPTNHPLLT 286 (330)
T ss_dssp EEEECCCCCTTTTTCBSHHHHHHSCTTCEEEECS-----CGGGBCHHHHHHHHHHT-SSSEEEESCCSSSSCCTTCGGGG
T ss_pred EEEEeCCCChHHHHhhCHHHHhcCCCCcEEEECC-----CCcccCHHHHHHHHHcC-CccEEEeCCCCCCCCCCCChhhc
Confidence 9988752 4567777777776553334333 442 3567777776 4557777776655 2433 2332
Q ss_pred EEEEeCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHhCc
Q 020508 276 QMVERVSHR---DNLRTFVQKSEDVEKQCLAKAIKSYCELR 313 (325)
Q Consensus 276 Q~~~~I~~~---dt~~~l~~r~~~~~~~ll~~al~~i~~g~ 313 (325)
-..+-+.|. .|.+. .++ ....+.+.+..+.+|+
T Consensus 287 ~~nvi~tPh~~~~t~~~-~~~----~~~~~~~n~~~~~~g~ 322 (330)
T 2gcg_A 287 LKNCVILPHIGSATHRT-RNT----MSLLAANNLLAGLRGE 322 (330)
T ss_dssp CTTEEECCSCTTCBHHH-HHH----HHHHHHHHHHHHHHTC
T ss_pred CCCEEECCCCCCCcHHH-HHH----HHHHHHHHHHHHHcCC
Confidence 233333333 23322 222 2334555566666675
No 160
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=52.63 E-value=20 Score=33.86 Aligned_cols=57 Identities=14% Similarity=0.070 Sum_probs=37.7
Q ss_pred CCceEEEEEeCC-ch-HHHHHHHHhhcCCCCceEEEEEeCCCCCC-----------CchHHHHHHHCCCCEEEec
Q 020508 127 PKYKVAVLASKQ-EH-CLVDFLYGWQEGKLPVEITCVISNHDRGP-----------NSHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 127 ~~~ri~v~~Sg~-g~-~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~-----------~~~~~~~a~~~gIp~~~~~ 188 (325)
+..||+|..||. .| .+..|+.. . +.+|.+|..+.-... -..+.++|+++|||++.++
T Consensus 16 ~~~kVvVa~SGGvDSsv~a~lL~~--~---G~~V~~v~~~~~~~~~~~~~~~s~~d~~~a~~va~~LGIp~~vvd 85 (380)
T 2der_A 16 TAKKVIVGMSGGVDSSVSAWLLQQ--Q---GYQVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLGIELHTVN 85 (380)
T ss_dssp -CCEEEEECCSCSTTHHHHHHHHT--T---CCEEEEEEEECCCCCSHHHHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCEEEEEEEChHHHHHHHHHHHH--c---CCeEEEEEEEcCccccccCCCCCHHHHHHHHHHHHHcCCcEEEEe
Confidence 457999999985 34 44445432 2 478888877542111 1246889999999999876
No 161
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=52.50 E-value=1e+02 Score=28.44 Aligned_cols=100 Identities=10% Similarity=0.013 Sum_probs=54.1
Q ss_pred ceEEEEEeCC-ch--HHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCC-------------
Q 020508 129 YKVAVLASKQ-EH--CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKEN------------- 192 (325)
Q Consensus 129 ~ri~v~~Sg~-g~--~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~------------- 192 (325)
|||++++.|. |+ .+..|...+++. +++|.. ++.. ...+..++.|++++.++....
T Consensus 1 MrIli~~~gt~Ghv~p~~~La~~L~~~--Gh~V~v-~~~~------~~~~~v~~~g~~~~~l~~~~~~~~~~~~~~~~~~ 71 (404)
T 3h4t_A 1 MGVLITGCGSRGDTEPLVALAARLREL--GADARM-CLPP------DYVERCAEVGVPMVPVGRAVRAGAREPGELPPGA 71 (404)
T ss_dssp -CEEEEEESSHHHHHHHHHHHHHHHHT--TCCEEE-EECG------GGHHHHHHTTCCEEECSSCSSGGGSCTTCCCTTC
T ss_pred CeEEEEeCCCCccHHHHHHHHHHHHHC--CCeEEE-EeCH------HHHHHHHHcCCceeecCCCHHHHhccccCCHHHH
Confidence 5888887765 43 344455555443 477654 5533 257888899999988762211
Q ss_pred -hh-H---H----HHHHHhcCCCEEEEeccccccC--hhHHhhcCCCEEEEcCCCC
Q 020508 193 -ER-E---E----ELLELVQNTDFLVLARYMQILS--GKFLRSYGKDVINIHHGLL 237 (325)
Q Consensus 193 -~~-~---~----~~~~~l~~~Dliv~~g~~~il~--~~~l~~~~~~~iNiHpslL 237 (325)
.. . . ++.+.++++|++++.++...-. ..+-+.....++.++....
T Consensus 72 ~~~~~~~~~~~~~~l~~~~~~pD~Vi~~~~~~~~~~a~~~A~~lgiP~v~~~~~p~ 127 (404)
T 3h4t_A 72 AEVVTEVVAEWFDKVPAAIEGCDAVVTTGLLPAAVAVRSMAEKLGIPYRYTVLSPD 127 (404)
T ss_dssp GGGHHHHHHHHHHHHHHHHTTCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGG
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEECCchhhhhhhhhHHhhcCCCEEEEEcCCc
Confidence 00 0 1 1222223799998875532211 1122234556776666543
No 162
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=52.26 E-value=26 Score=29.65 Aligned_cols=56 Identities=14% Similarity=-0.037 Sum_probs=37.0
Q ss_pred CceEEEEEeCCc-h-HHHHHHHHhhcCCCCceEEEEEeCCCCC-CCchHHHHHHHCCCCEEEec
Q 020508 128 KYKVAVLASKQE-H-CLVDFLYGWQEGKLPVEITCVISNHDRG-PNSHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 128 ~~ri~v~~Sg~g-~-~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~-~~~~~~~~a~~~gIp~~~~~ 188 (325)
+.|+++..||.- | .+..++.. .+.++.++..++... .-..+.++|+++|||++.++
T Consensus 6 ~~kv~v~~SGG~DS~~ll~ll~~-----~g~~v~~~~v~~~~~~~~~~~~~~a~~lgi~~~~~~ 64 (203)
T 3k32_A 6 LMDVHVLFSGGKDSSLSAVILKK-----LGYNPHLITINFGVIPSYKLAEETAKILGFKHKVIT 64 (203)
T ss_dssp CEEEEEECCCSHHHHHHHHHHHH-----TTEEEEEEEEECSSSCTTHHHHHHHHHHTCEEEEEE
T ss_pred CCeEEEEEECcHHHHHHHHHHHH-----cCCCeEEEEEeCCCchHHHHHHHHHHHhCCCEEEEE
Confidence 358999999863 3 33444432 246777776655321 23457899999999998776
No 163
>4etn_A LMPTP, low molecular weight protein-tyrosine-phosphatase; dephosphorylation, hydrolase; 1.10A {Bacillus subtilis} PDB: 4eti_A 1zgg_A
Probab=52.10 E-value=20 Score=30.41 Aligned_cols=81 Identities=12% Similarity=0.166 Sum_probs=44.6
Q ss_pred CCceEEEEEeCCc--hHHHH-HHHHhhcC-CCCceEEEEEeC--CCCCCCchHHHHHHHCCCCEEEec-CCCChhHHHHH
Q 020508 127 PKYKVAVLASKQE--HCLVD-FLYGWQEG-KLPVEITCVISN--HDRGPNSHVIRFLERHGIPYHYLC-AKENEREEELL 199 (325)
Q Consensus 127 ~~~ri~v~~Sg~g--~~l~~-Ll~~~~~~-~l~~~I~~Vvt~--~~~~~~~~~~~~a~~~gIp~~~~~-~~~~~~~~~~~ 199 (325)
+++||.|+.+|+- |.+.+ +++....+ .+..+|.---+. +..+.+....+.++++||++. .. +.. . ++.
T Consensus 33 ~~~~VLFVC~gNiCRSpmAEai~r~~~~~~g~~~~v~SAGt~~~~G~~~dp~a~~vl~e~Gidis-hrar~l--t-~~d- 107 (184)
T 4etn_A 33 GSMDIIFVCTGNTSRSPMAEALFKSIAEREGLNVNVRSAGVFASPNGKATPHAVEALFEKHIALN-HVSSPL--T-EEL- 107 (184)
T ss_dssp -CEEEEEEESSSSSHHHHHHHHHHHHHHHHTCCEEEEEEETTCCTTCBCCHHHHHHHHHTTCCCC-CBCCBC--C-HHH-
T ss_pred CCCEEEEECCCchhHHHHHHHHHHHHHHhcCCcEEEEeeecCCcCCCCCCHHHHHHHHHcCCCch-hccCcC--C-HHH-
Confidence 4689999988874 55544 55443211 123333322222 222234567889999999986 33 222 1 122
Q ss_pred HHhcCCCEEEEeccc
Q 020508 200 ELVQNTDFLVLARYM 214 (325)
Q Consensus 200 ~~l~~~Dliv~~g~~ 214 (325)
+..+|+|+...-.
T Consensus 108 --~~~~DlIltMd~~ 120 (184)
T 4etn_A 108 --MESADLVLAMTHQ 120 (184)
T ss_dssp --HHHCSEEEESSHH
T ss_pred --cCCCCEEEEcCcH
Confidence 2268999998653
No 164
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=51.49 E-value=15 Score=35.12 Aligned_cols=50 Identities=14% Similarity=0.165 Sum_probs=30.2
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEec
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~ 188 (325)
+++|+|++.|. |..+...|.. . +++++.|=.++ ...+.+++.|+++++-+
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~--~---g~~vvvId~d~------~~v~~~~~~g~~vi~GD 54 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLS--S---GVKMVVLDHDP------DHIETLRKFGMKVFYGD 54 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHH--T---TCCEEEEECCH------HHHHHHHHTTCCCEESC
T ss_pred CCeEEEECCCHHHHHHHHHHHH--C---CCCEEEEECCH------HHHHHHHhCCCeEEEcC
Confidence 46888887765 5555555543 2 35655443332 34566778899987654
No 165
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}
Probab=51.02 E-value=74 Score=29.16 Aligned_cols=152 Identities=14% Similarity=0.169 Sum_probs=81.7
Q ss_pred CCceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCC
Q 020508 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (325)
Q Consensus 127 ~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 205 (325)
..++|+|++.|. |..+...+.. . +++|. +.++.. . .+.+.+.|+.+ .+ +.+.++++
T Consensus 145 ~g~~vgIIG~G~iG~~vA~~l~~--~---G~~V~--~~d~~~--~---~~~~~~~g~~~--~~---------l~e~l~~a 201 (333)
T 2d0i_A 145 YGKKVGILGMGAIGKAIARRLIP--F---GVKLY--YWSRHR--K---VNVEKELKARY--MD---------IDELLEKS 201 (333)
T ss_dssp TTCEEEEECCSHHHHHHHHHHGG--G---TCEEE--EECSSC--C---HHHHHHHTEEE--CC---------HHHHHHHC
T ss_pred CcCEEEEEccCHHHHHHHHHHHH--C---CCEEE--EECCCc--c---hhhhhhcCcee--cC---------HHHHHhhC
Confidence 357899988775 5555544432 2 35653 333321 1 14455666532 11 22344578
Q ss_pred CEEEEeccc-----cccChhHHhhcCCCEEEEcCCCCCCCCCCc----HHHHHHHhCCcEeEEEEEEecCCC-CCCCeEE
Q 020508 206 DFLVLARYM-----QILSGKFLRSYGKDVINIHHGLLPSFKGGK----PAKQAFDAGVKLIGATSHFVTEEL-DAGPIIE 275 (325)
Q Consensus 206 Dliv~~g~~-----~il~~~~l~~~~~~~iNiHpslLP~yRG~~----pi~~ai~~G~~~~GvTvh~v~~~~-D~G~Ii~ 275 (325)
|+++++--. .++..++++..+.+ +-+.-| ||.- .+..++.+| ...|+-++....+- ..-+.+.
T Consensus 202 DiVil~vp~~~~t~~~i~~~~~~~mk~g-ilin~s-----rg~~vd~~aL~~aL~~~-~i~gaglDv~~~EP~~~~~L~~ 274 (333)
T 2d0i_A 202 DIVILALPLTRDTYHIINEERVKKLEGK-YLVNIG-----RGALVDEKAVTEAIKQG-KLKGYATDVFEKEPVREHELFK 274 (333)
T ss_dssp SEEEECCCCCTTTTTSBCHHHHHHTBTC-EEEECS-----CGGGBCHHHHHHHHHTT-CBCEEEESCCSSSSCSCCGGGG
T ss_pred CEEEEcCCCChHHHHHhCHHHHhhCCCC-EEEECC-----CCcccCHHHHHHHHHcC-CceEEEecCCCCCCCCCchHHc
Confidence 999988543 47887778777656 556666 6643 355677776 45566666665432 1223333
Q ss_pred EE-EEeCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHhCc
Q 020508 276 QM-VERVSHR---DNLRTFVQKSEDVEKQCLAKAIKSYCELR 313 (325)
Q Consensus 276 Q~-~~~I~~~---dt~~~l~~r~~~~~~~ll~~al~~i~~g~ 313 (325)
.. .+-+.|. .|.+.. ++ ..+++.+.+..+.+|+
T Consensus 275 ~~~nviltPh~~~~t~~~~-~~----~~~~~~~n~~~~~~g~ 311 (333)
T 2d0i_A 275 YEWETVLTPHYAGLALEAQ-ED----VGFRAVENLLKVLRGE 311 (333)
T ss_dssp CTTTEEECCSCTTCCHHHH-HH----HHHHHHHHHHHHHTTC
T ss_pred CCCCEEEcCccCCCcHHHH-HH----HHHHHHHHHHHHHcCC
Confidence 33 3444443 333332 22 2345556666666675
No 166
>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*
Probab=50.41 E-value=13 Score=32.41 Aligned_cols=124 Identities=16% Similarity=0.147 Sum_probs=57.8
Q ss_pred CCChHHHHHHHHhhhhhhcccceeeeec----------CCCCCceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeC
Q 020508 96 KWPREQMDEDFFKLSKMFNAMRSVVRVP----------DIDPKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISN 164 (325)
Q Consensus 96 ~~~~~~L~~~l~~l~~~l~~~~~~~~~~----------~~~~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~ 164 (325)
+.+.+++|.+|.-++ .+|-.+..+++. ..+.++|+++++.|. |..+ +........++++++++..
T Consensus 44 ~~~~~~iRkdls~fg-~~G~~g~gY~v~~L~~~~~~~lg~~~~~rV~IIGAG~~G~~L---a~~~~~~~~g~~iVg~~D~ 119 (215)
T 2vt3_A 44 KVDSATIRRDFSYFG-ALGKKGYGYNVDYLLSFFRKTLDQDEMTDVILIGVGNLGTAF---LHYNFTKNNNTKISMAFDI 119 (215)
T ss_dssp CCCHHHHHHHHHHTT-CCC-----EEHHHHHHHHHHHHHHC---CEEEECCSHHHHHH---HHCC------CCEEEEEES
T ss_pred CCCHHHeechHHHHH-HhcCCcceEEhHHHHHHHHHHhCcCCCCEEEEEccCHHHHHH---HHHHhcccCCcEEEEEEeC
Confidence 455677777777763 345544444431 123457899887775 4443 3321112335889999976
Q ss_pred CCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCCEEEEeccc---cccChhHHhhcCCCEEEEcCCCC
Q 020508 165 HDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYM---QILSGKFLRSYGKDVINIHHGLL 237 (325)
Q Consensus 165 ~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dliv~~g~~---~il~~~~l~~~~~~~iNiHpslL 237 (325)
.++..+. .-.|+|+...+ ++.+.+++.|.++++-=. +-+-+.+++.--.+++|+=|--|
T Consensus 120 dp~k~g~------~i~gv~V~~~~--------dl~eli~~~D~ViIAvPs~~~~ei~~~l~~aGi~~Ilnf~P~~l 181 (215)
T 2vt3_A 120 NESKIGT------EVGGVPVYNLD--------DLEQHVKDESVAILTVPAVAAQSITDRLVALGIKGILNFTPARL 181 (215)
T ss_dssp CTTTTTC------EETTEEEEEGG--------GHHHHCSSCCEEEECSCHHHHHHHHHHHHHTTCCEEEECSSCCC
T ss_pred CHHHHHh------HhcCCeeechh--------hHHHHHHhCCEEEEecCchhHHHHHHHHHHcCCCEEEEcCceec
Confidence 5432111 12567876422 245555523888887422 11111222222234777766654
No 167
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}
Probab=50.06 E-value=39 Score=32.05 Aligned_cols=161 Identities=6% Similarity=-0.007 Sum_probs=80.9
Q ss_pred HHHHHHHHhcCCeEeEeeeeccCC-CCeEEEEEEEEeCCCC-CChHHHHHHHHhhhhhhcccceeeeecCCCCCceEEEE
Q 020508 57 AKLSECIASRGGNILAADVFVPEK-KNVFYSRSEFIFDPIK-WPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVL 134 (325)
Q Consensus 57 a~Vt~~La~~giNI~~l~~~~~~~-~g~F~~~~~v~~p~~~-~~~~~L~~~l~~l~~~l~~~~~~~~~~~~~~~~ri~v~ 134 (325)
.+.++.|.++|+..++++.-.+.. .+.+ .+-.|-+. ........+...+..-+++. ..--..-++.||+|+
T Consensus 118 ~~l~~~l~~~~it~ia~E~i~~~~~~~~l----~~l~~~s~iAGy~Av~~aa~~l~~~~~~l---~~~~~~v~~~kV~Vi 190 (381)
T 3p2y_A 118 PELASRLRIADVTAFAMESIPRISRAQTM----DALSSQANVAGYKAVLLGASLSTRFVPML---TTAAGTVKPASALVL 190 (381)
T ss_dssp HHHHHHHHHTTCEEEEGGGCCSSGGGGGG----CHHHHHHHHHHHHHHHHHHHHCSSCSSCE---ECSSCEECCCEEEEE
T ss_pred HHHHHHHHHCCCeEEEeeccccccccccc----eeecchhHHHHHHHHHHHHHHhhhhhhhh---hcccCCcCCCEEEEE
Confidence 578899999999998887742111 1111 00000000 00122333333333333322 110111245799998
Q ss_pred EeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEec-----C-CCC---------hhHHHH
Q 020508 135 ASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-----A-KEN---------EREEEL 198 (325)
Q Consensus 135 ~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~-----~-~~~---------~~~~~~ 198 (325)
+.|. |.....++..+ +++|. +.++. ..-.+.+++.|..+..++ . .+. ...+.+
T Consensus 191 G~G~iG~~aa~~a~~l-----Ga~V~--v~D~~----~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l 259 (381)
T 3p2y_A 191 GVGVAGLQALATAKRL-----GAKTT--GYDVR----PEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQAL 259 (381)
T ss_dssp SCSHHHHHHHHHHHHH-----TCEEE--EECSS----GGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHC-----CCEEE--EEeCC----HHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHH
Confidence 8775 55555555442 45543 33432 123566777776543211 0 000 112345
Q ss_pred HHHhcCCCEEEEec------cccccChhHHhhcCCCEEEEcCC
Q 020508 199 LELVQNTDFLVLAR------YMQILSGKFLRSYGKDVINIHHG 235 (325)
Q Consensus 199 ~~~l~~~Dliv~~g------~~~il~~~~l~~~~~~~iNiHps 235 (325)
.+.++++|+++.+- -..++.++.++..+.+.+-+--|
T Consensus 260 ~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA 302 (381)
T 3p2y_A 260 EDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLA 302 (381)
T ss_dssp HHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred HHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEe
Confidence 55666899999762 23678999999887665544444
No 168
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=50.04 E-value=31 Score=31.12 Aligned_cols=81 Identities=16% Similarity=0.215 Sum_probs=48.8
Q ss_pred ceEEEEEeC-----CchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhc
Q 020508 129 YKVAVLASK-----QEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 203 (325)
Q Consensus 129 ~ri~v~~Sg-----~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 203 (325)
|||+|.+-+ .||-++.|--+ ..+. ++..+ |+... + .+.++.|.|+..++. ...+++.+.++
T Consensus 1 mki~ir~Da~~~IG~GHvmRcl~LA---~~l~-~v~F~-~~~~~--~----~~~~~~g~~v~~l~~---~d~~~~~~~l~ 66 (282)
T 3hbm_A 1 MKVLFRSDSSSQIGFGHIKRDLVLA---KQYS-DVSFA-CLPLE--G----SLIDEIPYPVYELSS---ESIYELINLIK 66 (282)
T ss_dssp CCEEEEECCBTTTBSHHHHHHHHHH---TTCS-SEEEE-ECCCT--T----CCGGGCCSCEEECSS---SCHHHHHHHHH
T ss_pred CEEEEEEecCCCccccHHHHHHHHH---HHHH-hCEEE-EecCc--H----hHHHHCCCeEEEcCc---cCHHHHHHHHH
Confidence 578888744 36777765433 2233 55554 44321 1 223345999987762 22356777776
Q ss_pred --CCCEEEEeccccccChhHHhhc
Q 020508 204 --NTDFLVLARYMQILSGKFLRSY 225 (325)
Q Consensus 204 --~~Dliv~~g~~~il~~~~l~~~ 225 (325)
++|++|+=+|. ++.+..+..
T Consensus 67 ~~~~d~lIvD~Y~--~~~~~~~~l 88 (282)
T 3hbm_A 67 EEKFELLIIDHYG--ISVDDEKLI 88 (282)
T ss_dssp HHTCSEEEEECTT--CCHHHHHHH
T ss_pred hCCCCEEEEECCC--CCHHHHHHH
Confidence 89999999985 566665543
No 169
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=49.75 E-value=76 Score=28.16 Aligned_cols=78 Identities=10% Similarity=0.138 Sum_probs=43.9
Q ss_pred ceEEEEEeCCchHH---HHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCC-CCh-----------
Q 020508 129 YKVAVLASKQEHCL---VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK-ENE----------- 193 (325)
Q Consensus 129 ~ri~v~~Sg~g~~l---~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~-~~~----------- 193 (325)
+||+++..+.|... ..|.+.+.+. +++|.. ++..+. .......+.|++++.++.. ...
T Consensus 7 mkIl~~~~~~gG~~~~~~~la~~L~~~--G~~V~v-~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 79 (364)
T 1f0k_A 7 KRLMVMAGGTGGHVFPGLAVAHHLMAQ--GWQVRW-LGTADR----MEADLVPKHGIEIDFIRISGLRGKGIKALIAAPL 79 (364)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHTT--TCEEEE-EECTTS----THHHHGGGGTCEEEECCCCCCTTCCHHHHHTCHH
T ss_pred cEEEEEeCCCccchhHHHHHHHHHHHc--CCEEEE-EecCCc----chhhhccccCCceEEecCCccCcCccHHHHHHHH
Confidence 79999876664322 3566665443 577764 444321 1234456679998776521 100
Q ss_pred ----hHHHHHHHhc--CCCEEEEecc
Q 020508 194 ----REEELLELVQ--NTDFLVLARY 213 (325)
Q Consensus 194 ----~~~~~~~~l~--~~Dliv~~g~ 213 (325)
.-..+.+.++ +||++++.+.
T Consensus 80 ~~~~~~~~l~~~l~~~~pDvv~~~~~ 105 (364)
T 1f0k_A 80 RIFNAWRQARAIMKAYKPDVVLGMGG 105 (364)
T ss_dssp HHHHHHHHHHHHHHHHCCSEEEECSS
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 0123444454 8999999764
No 170
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=49.30 E-value=12 Score=34.55 Aligned_cols=48 Identities=13% Similarity=0.020 Sum_probs=26.3
Q ss_pred CCceEEEEEeCC-ch-HHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCC
Q 020508 127 PKYKVAVLASKQ-EH-CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGI 182 (325)
Q Consensus 127 ~~~ri~v~~Sg~-g~-~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gI 182 (325)
+++||+|++.|. |. .+...+.. .+ +.++++|+.... ....+++++++.
T Consensus 4 ~~~rigiIG~G~~g~~~~~~~l~~--~~--~~~l~av~d~~~----~~~~~~a~~~~~ 53 (359)
T 3m2t_A 4 SLIKVGLVGIGAQMQENLLPSLLQ--MQ--DIRIVAACDSDL----ERARRVHRFISD 53 (359)
T ss_dssp CCEEEEEECCSHHHHHTHHHHHHT--CT--TEEEEEEECSSH----HHHGGGGGTSCS
T ss_pred CcceEEEECCCHHHHHHHHHHHHh--CC--CcEEEEEEcCCH----HHHHHHHHhcCC
Confidence 368999999886 43 22222222 12 478888775431 234455556543
No 171
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}
Probab=49.19 E-value=73 Score=29.12 Aligned_cols=79 Identities=13% Similarity=0.028 Sum_probs=41.0
Q ss_pred CCceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhc--
Q 020508 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-- 203 (325)
Q Consensus 127 ~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~-- 203 (325)
+..+|+|.++|. |.....+.+. .+++|+++..+++ -.++++++|.... ++.......+++.+...
T Consensus 189 ~g~~VlV~G~G~vG~~a~qla~~-----~Ga~Vi~~~~~~~------~~~~~~~lGa~~v-i~~~~~~~~~~v~~~~~g~ 256 (363)
T 3uog_A 189 AGDRVVVQGTGGVALFGLQIAKA-----TGAEVIVTSSSRE------KLDRAFALGADHG-INRLEEDWVERVYALTGDR 256 (363)
T ss_dssp TTCEEEEESSBHHHHHHHHHHHH-----TTCEEEEEESCHH------HHHHHHHHTCSEE-EETTTSCHHHHHHHHHTTC
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-----cCCEEEEEecCch------hHHHHHHcCCCEE-EcCCcccHHHHHHHHhCCC
Confidence 345788876432 2333333332 2467766554332 3677899998764 33221122234444443
Q ss_pred CCCEEEEecccccc
Q 020508 204 NTDFLVLARYMQIL 217 (325)
Q Consensus 204 ~~Dliv~~g~~~il 217 (325)
.+|+++-+.-...+
T Consensus 257 g~D~vid~~g~~~~ 270 (363)
T 3uog_A 257 GADHILEIAGGAGL 270 (363)
T ss_dssp CEEEEEEETTSSCH
T ss_pred CceEEEECCChHHH
Confidence 68988876444333
No 172
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=48.43 E-value=66 Score=29.36 Aligned_cols=52 Identities=12% Similarity=0.206 Sum_probs=32.9
Q ss_pred CCceEEEEEeCC-ch--HHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEec
Q 020508 127 PKYKVAVLASKQ-EH--CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 127 ~~~ri~v~~Sg~-g~--~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~ 188 (325)
++|||+++..+. |+ .+..|...+++. +++|.. ++. . ..+..+..|+++..++
T Consensus 19 ~~MrIl~~~~~~~Ghv~~~~~La~~L~~~--GheV~v-~~~-~------~~~~~~~~G~~~~~~~ 73 (398)
T 3oti_A 19 RHMRVLFVSSPGIGHLFPLIQLAWGFRTA--GHDVLI-AVA-E------HADRAAAAGLEVVDVA 73 (398)
T ss_dssp CCCEEEEECCSSHHHHGGGHHHHHHHHHT--TCEEEE-EES-S------CHHHHHTTTCEEEESS
T ss_pred hcCEEEEEcCCCcchHhHHHHHHHHHHHC--CCEEEE-ecc-c------hHHHHHhCCCeeEecC
Confidence 458999887543 43 334566655543 478764 443 2 2566788999998766
No 173
>2h9z_A Hypothetical protein HP0495; feredoxin-like (beta-alpha-beta-BETA-alpha-beta), structural genomics, unknown function; NMR {Helicobacter pylori} SCOP: d.58.54.2 PDB: 2joq_A
Probab=48.15 E-value=43 Score=24.66 Aligned_cols=69 Identities=14% Similarity=0.004 Sum_probs=46.0
Q ss_pred CCCCcceEEEEEEcCCCcc-hHHHHHHHHHhcCCeEeEeeeeccCCCCeEE-EEEEEEeCCCCCChHHHHHHHHhhhhh
Q 020508 36 VSPTLTHGIHVFHCPDEVG-IVAKLSECIASRGGNILAADVFVPEKKNVFY-SRSEFIFDPIKWPREQMDEDFFKLSKM 112 (325)
Q Consensus 36 ~~~~~~~~~ltv~g~DrpG-IVa~Vt~~La~~giNI~~l~~~~~~~~g~F~-~~~~v~~p~~~~~~~~L~~~l~~l~~~ 112 (325)
....+-.|.+.++|++.++ +.+.|..++ +.+..+ +. +. ....|.|. ..+.+.+ .+.+++.+-+.++++-
T Consensus 9 ~iefPc~~~~Kvig~~~~~~~~~~V~~v~-~~~~~~-~~-~r-~Ss~GkY~Svtv~i~a----~s~eq~~~iY~~L~~~ 79 (86)
T 2h9z_A 9 TIIYPCLWDYRVIMTTKDTSTLKELLETY-QRPFKL-EF-KN-TSKNAKFYSFNVSMEV----SNESERNEIFQKISQL 79 (86)
T ss_dssp CCCCCSEEEEEEEECCSCTHHHHHHSTTC-CSSEEC-CB-SC-SSCCSSCEEEEEEEEC----CSHHHHHHHHHHHTCS
T ss_pred cccCCCCceEEEEEECCcHHHHHHHHHHH-hccCCC-cc-cc-cCCCCeEEEEEEEEEE----CCHHHHHHHHHHHhcC
Confidence 4455678999999999999 999999998 544433 21 11 12346553 3344433 3578898888887653
No 174
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=47.95 E-value=22 Score=29.00 Aligned_cols=71 Identities=11% Similarity=0.006 Sum_probs=38.0
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHh---c
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELV---Q 203 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l---~ 203 (325)
..+|+|++.|. |..+...|.. .+ +++|+++-.++ .-.+.+.+.|+.+...+ ..+.+.+..+ .
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~--~~--g~~V~vid~~~------~~~~~~~~~g~~~~~gd----~~~~~~l~~~~~~~ 104 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRA--RY--GKISLGIEIRE------EAAQQHRSEGRNVISGD----ATDPDFWERILDTG 104 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHH--HH--CSCEEEEESCH------HHHHHHHHTTCCEEECC----TTCHHHHHTBCSCC
T ss_pred CCcEEEECCCHHHHHHHHHHHh--cc--CCeEEEEECCH------HHHHHHHHCCCCEEEcC----CCCHHHHHhccCCC
Confidence 56899987664 5555444432 20 24555432222 22445667898876543 1123344443 3
Q ss_pred CCCEEEEec
Q 020508 204 NTDFLVLAR 212 (325)
Q Consensus 204 ~~Dliv~~g 212 (325)
++|+++++.
T Consensus 105 ~ad~vi~~~ 113 (183)
T 3c85_A 105 HVKLVLLAM 113 (183)
T ss_dssp CCCEEEECC
T ss_pred CCCEEEEeC
Confidence 789888853
No 175
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=47.34 E-value=64 Score=29.17 Aligned_cols=51 Identities=14% Similarity=0.167 Sum_probs=31.6
Q ss_pred CceEEEEEeCC-ch--HHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEe
Q 020508 128 KYKVAVLASKQ-EH--CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYL 187 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~--~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~ 187 (325)
+|||++++.+. |+ .+..|...+++. +++|.. ++.. ...+.....|++++.+
T Consensus 1 ~MrIl~~~~~~~gh~~~~~~la~~L~~~--GheV~v-~~~~------~~~~~~~~~g~~~~~~ 54 (391)
T 3tsa_A 1 HMRVLVVPLPYPTHLMAMVPLCWALQAS--GHEVLI-AAPP------ELQATAHGAGLTTAGI 54 (391)
T ss_dssp CCEEEEECCSCHHHHHTTHHHHHHHHHT--TCEEEE-EECH------HHHHHHHHBTCEEEEC
T ss_pred CcEEEEEcCCCcchhhhHHHHHHHHHHC--CCEEEE-ecCh------hhHHHHHhCCCceeee
Confidence 47999887543 44 234455555443 578754 4432 3456778899999877
No 176
>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}
Probab=47.10 E-value=12 Score=33.87 Aligned_cols=39 Identities=10% Similarity=0.213 Sum_probs=21.7
Q ss_pred cCCCCCceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCC
Q 020508 123 PDIDPKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNH 165 (325)
Q Consensus 123 ~~~~~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~ 165 (325)
|.+.+++||+|++.|. |..+...+.. .+ +.++++|+...
T Consensus 5 p~~~~~~~igiIG~G~~g~~~~~~l~~--~~--~~~~v~v~d~~ 44 (315)
T 3c1a_A 5 PANNSPVRLALIGAGRWGKNYIRTIAG--LP--GAALVRLASSN 44 (315)
T ss_dssp ----CCEEEEEEECTTTTTTHHHHHHH--CT--TEEEEEEEESC
T ss_pred CCCCCcceEEEECCcHHHHHHHHHHHh--CC--CcEEEEEEeCC
Confidence 4455679999999986 5433332222 12 47788777643
No 177
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Probab=47.02 E-value=31 Score=27.00 Aligned_cols=68 Identities=16% Similarity=0.228 Sum_probs=38.9
Q ss_pred CceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCCE
Q 020508 128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDF 207 (325)
Q Consensus 128 ~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dl 207 (325)
.+||+|+++|. --..+...+.. .+++ +.|+ ++. .....++++++|+++.... ++.+.++++|+
T Consensus 21 ~~~v~iiG~G~--iG~~~a~~l~~--~g~~-v~v~-~r~---~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~Di 83 (144)
T 3oj0_A 21 GNKILLVGNGM--LASEIAPYFSY--PQYK-VTVA-GRN---IDHVRAFAEKYEYEYVLIN--------DIDSLIKNNDV 83 (144)
T ss_dssp CCEEEEECCSH--HHHHHGGGCCT--TTCE-EEEE-ESC---HHHHHHHHHHHTCEEEECS--------CHHHHHHTCSE
T ss_pred CCEEEEECCCH--HHHHHHHHHHh--CCCE-EEEE-cCC---HHHHHHHHHHhCCceEeec--------CHHHHhcCCCE
Confidence 46999988753 22333333333 2466 4444 332 2345678889897765332 12334558999
Q ss_pred EEEec
Q 020508 208 LVLAR 212 (325)
Q Consensus 208 iv~~g 212 (325)
++.+.
T Consensus 84 vi~at 88 (144)
T 3oj0_A 84 IITAT 88 (144)
T ss_dssp EEECS
T ss_pred EEEeC
Confidence 98874
No 178
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=46.87 E-value=19 Score=34.83 Aligned_cols=71 Identities=17% Similarity=0.184 Sum_probs=41.7
Q ss_pred CCceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhc--
Q 020508 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-- 203 (325)
Q Consensus 127 ~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~-- 203 (325)
..|||.++|.|. |+.+...|. .. +++|+.|=.++ ..+.++.+++++++..-+ ..++++++...
T Consensus 2 ~~M~iiI~G~G~vG~~la~~L~---~~--~~~v~vId~d~-----~~~~~~~~~~~~~~i~Gd----~~~~~~L~~Agi~ 67 (461)
T 4g65_A 2 NAMKIIILGAGQVGGTLAENLV---GE--NNDITIVDKDG-----DRLRELQDKYDLRVVNGH----ASHPDVLHEAGAQ 67 (461)
T ss_dssp CCEEEEEECCSHHHHHHHHHTC---ST--TEEEEEEESCH-----HHHHHHHHHSSCEEEESC----TTCHHHHHHHTTT
T ss_pred CcCEEEEECCCHHHHHHHHHHH---HC--CCCEEEEECCH-----HHHHHHHHhcCcEEEEEc----CCCHHHHHhcCCC
Confidence 468999988775 566554442 21 46765432222 245566778999987543 22344555443
Q ss_pred CCCEEEEe
Q 020508 204 NTDFLVLA 211 (325)
Q Consensus 204 ~~Dliv~~ 211 (325)
++|+++.+
T Consensus 68 ~ad~~ia~ 75 (461)
T 4g65_A 68 DADMLVAV 75 (461)
T ss_dssp TCSEEEEC
T ss_pred cCCEEEEE
Confidence 67877765
No 179
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=46.66 E-value=1.3e+02 Score=27.20 Aligned_cols=53 Identities=15% Similarity=0.298 Sum_probs=33.6
Q ss_pred CCceEEEEEeCC-ch--HHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEec
Q 020508 127 PKYKVAVLASKQ-EH--CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 127 ~~~ri~v~~Sg~-g~--~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~ 188 (325)
.+|||+++..+. |+ .+..|...+++. +++|.. ++.+ ...+..+..|+++..++
T Consensus 14 ~~MrIl~~~~~~~gh~~~~~~La~~L~~~--GheV~v-~~~~------~~~~~~~~~G~~~~~~~ 69 (398)
T 4fzr_A 14 SHMRILVIAGCSEGFVMPLVPLSWALRAA--GHEVLV-AASE------NMGPTVTGAGLPFAPTC 69 (398)
T ss_dssp -CCEEEEECCSSHHHHGGGHHHHHHHHHT--TCEEEE-EEEG------GGHHHHHHTTCCEEEEE
T ss_pred CceEEEEEcCCCcchHHHHHHHHHHHHHC--CCEEEE-EcCH------HHHHHHHhCCCeeEecC
Confidence 468999886553 43 334566655443 578754 4433 24677888999998776
No 180
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=46.62 E-value=24 Score=34.75 Aligned_cols=65 Identities=14% Similarity=0.097 Sum_probs=48.5
Q ss_pred ceEEEEEEcC--CCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhccc
Q 020508 41 THGIHVFHCP--DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (325)
Q Consensus 41 ~~~~ltv~g~--DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~ 116 (325)
.-..++++|. .+||+.+++-+.|++.|+||.-++|-. ..-. +.+-++ .++..+++..+-+.|...
T Consensus 419 ~~a~VsiVG~m~~~~Gvaa~~f~aL~~~~InI~mIsqGs----Sei~--Is~vV~-----~~d~~~Av~aLH~~f~~~ 485 (510)
T 2cdq_A 419 GRAIISLIGNVQHSSLILERAFHVLYTKGVNVQMISQGA----SKVN--ISFIVN-----EAEAEGCVQALHKSFFES 485 (510)
T ss_dssp EEEEEEEEECGGGHHHHHHHHHHHHHHHTCCCSEEEECT----TCSE--EEEEEE-----HHHHHHHHHHHHHHHHSS
T ss_pred CcEEEEEEEECCCChhHHHHHHHHHHHCCCCEEEEEecC----Ccce--EEEEEe-----HHHHHHHHHHHHHHHhcC
Confidence 3457999998 789999999999999999999888722 2222 333333 467888888888888654
No 181
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=46.46 E-value=23 Score=27.39 Aligned_cols=63 Identities=16% Similarity=-0.026 Sum_probs=35.6
Q ss_pred CCCceEEEEEeCCch-HH--HHHHHHhhcCCCCceEEEEEeCC-CCC-C--C------------chHHHHHHHCCCCEEE
Q 020508 126 DPKYKVAVLASKQEH-CL--VDFLYGWQEGKLPVEITCVISNH-DRG-P--N------------SHVIRFLERHGIPYHY 186 (325)
Q Consensus 126 ~~~~ri~v~~Sg~g~-~l--~~Ll~~~~~~~l~~~I~~Vvt~~-~~~-~--~------------~~~~~~a~~~gIp~~~ 186 (325)
.+++||.++.++..| .+ ..+-+..++..++.++.++-... ++. . + ..+++.|..+|||+..
T Consensus 4 ~~~mkIlL~C~aGmSTsllv~km~~~a~~~gi~v~i~a~~~~~~~~~~~~~DvvLLgPQV~y~~~~ik~~~~~~~ipV~v 83 (108)
T 3nbm_A 4 SKELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILAPQVRSYYREMKVDAERLGIQIVA 83 (108)
T ss_dssp -CCEEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEEEEETTSCTTTGGGCSEEEECGGGGGGHHHHHHHHTTTTCEEEE
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEcchHHHHhhccCCCEEEEChHHHHHHHHHHHHhhhcCCcEEE
Confidence 357888888876543 32 23334444445667776532111 110 0 1 2367778888999998
Q ss_pred ec
Q 020508 187 LC 188 (325)
Q Consensus 187 ~~ 188 (325)
++
T Consensus 84 I~ 85 (108)
T 3nbm_A 84 TR 85 (108)
T ss_dssp CC
T ss_pred eC
Confidence 87
No 182
>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}
Probab=46.06 E-value=66 Score=30.17 Aligned_cols=155 Identities=12% Similarity=0.069 Sum_probs=83.6
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCC
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 206 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 206 (325)
.++|+|++-|. |..+...+.. .+.+|.+ .++.. -.+.+.+.|+.+. ++.++++++|
T Consensus 176 gktvGIIGlG~IG~~vA~~l~~-----fG~~V~~--~d~~~-----~~~~~~~~g~~~~-----------~l~ell~~aD 232 (365)
T 4hy3_A 176 GSEIGIVGFGDLGKALRRVLSG-----FRARIRV--FDPWL-----PRSMLEENGVEPA-----------SLEDVLTKSD 232 (365)
T ss_dssp SSEEEEECCSHHHHHHHHHHTT-----SCCEEEE--ECSSS-----CHHHHHHTTCEEC-----------CHHHHHHSCS
T ss_pred CCEEEEecCCcccHHHHHhhhh-----CCCEEEE--ECCCC-----CHHHHhhcCeeeC-----------CHHHHHhcCC
Confidence 46899988765 5555544432 2466542 33321 1345566776421 1344556899
Q ss_pred EEEEecc-----ccccChhHHhhcCCCEEEEcCCCCCCCCCC----cHHHHHHHhCCcEeEEEEEEecCCCCCCCeEEEE
Q 020508 207 FLVLARY-----MQILSGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQM 277 (325)
Q Consensus 207 liv~~g~-----~~il~~~~l~~~~~~~iNiHpslLP~yRG~----~pi~~ai~~G~~~~GvTvh~v~~~~D~G~Ii~Q~ 277 (325)
++++.-- ..++..+.++..+.+.+=+--| ||. ..+..|+.+|.-..|.-++.-+.--..-|.+...
T Consensus 233 vV~l~~Plt~~T~~li~~~~l~~mk~gailIN~a-----RG~~vde~aL~~aL~~g~i~aaLDV~~~EPl~~~~pL~~~~ 307 (365)
T 4hy3_A 233 FIFVVAAVTSENKRFLGAEAFSSMRRGAAFILLS-----RADVVDFDALMAAVSSGHIVAASDVYPEEPLPLDHPVRSLK 307 (365)
T ss_dssp EEEECSCSSCC---CCCHHHHHTSCTTCEEEECS-----CGGGSCHHHHHHHHHTTSSEEEESCCSSSSCCTTCGGGTCT
T ss_pred EEEEcCcCCHHHHhhcCHHHHhcCCCCcEEEECc-----CCchhCHHHHHHHHHcCCceEEeeCCCCCCCCCCChhhcCC
Confidence 9998643 4588899999887664333333 563 4577888888654555444333211122333333
Q ss_pred EEeCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHhCcee
Q 020508 278 VERVSHR---DNLRTFVQKSEDVEKQCLAKAIKSYCELRVL 315 (325)
Q Consensus 278 ~~~I~~~---dt~~~l~~r~~~~~~~ll~~al~~i~~g~~~ 315 (325)
.+-+.|. .|.+.. +++ .....+.+..+.+|+-.
T Consensus 308 nvilTPHia~~t~e~~-~~~----~~~~~~ni~~~~~G~~~ 343 (365)
T 4hy3_A 308 GFIRSAHRAGALDSAF-KKM----GDMVLEDMDLMDRGLPP 343 (365)
T ss_dssp TEEECCSCSSCCHHHH-HHH----HHHHHHHHHHHHTTCCC
T ss_pred CEEECCccccCHHHHH-HHH----HHHHHHHHHHHHcCCCc
Confidence 3444444 233322 232 34555666677777654
No 183
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=45.99 E-value=87 Score=28.16 Aligned_cols=101 Identities=9% Similarity=0.076 Sum_probs=55.5
Q ss_pred CceEEEEEeCC-ch--HHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCC------------
Q 020508 128 KYKVAVLASKQ-EH--CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKEN------------ 192 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~--~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~------------ 192 (325)
++||+++..+. |+ .+..|.+.+++. +++|.. ++.. ...+..++.|+++..++....
T Consensus 4 M~~il~~~~~~~Ghv~~~~~La~~L~~~--GheV~v-~~~~------~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 74 (402)
T 3ia7_A 4 QRHILFANVQGHGHVYPSLGLVSELARR--GHRITY-VTTP------LFADEVKAAGAEVVLYKSEFDTFHVPEVVKQED 74 (402)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHHT--TCEEEE-EECH------HHHHHHHHTTCEEEECCCGGGTSSSSSSSCCTT
T ss_pred CCEEEEEeCCCCcccccHHHHHHHHHhC--CCEEEE-EcCH------HHHHHHHHcCCEEEecccccccccccccccccc
Confidence 35998887654 44 334455555443 578764 4432 356777889999987762100
Q ss_pred --------h------hHHHHHHHhc--CCCEEEEeccccccChhHHhhcCCCEEEEcCCCC
Q 020508 193 --------E------REEELLELVQ--NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLL 237 (325)
Q Consensus 193 --------~------~~~~~~~~l~--~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslL 237 (325)
. .-.++.+.++ +||++++-++........-...+..++.+-+++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~d~~~~~~~~~aA~~~giP~v~~~~~~~ 135 (402)
T 3ia7_A 75 AETQLHLVYVRENVAILRAAEEALGDNPPDLVVYDVFPFIAGRLLAARWDRPAVRLTGGFA 135 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEESTTHHHHHHHHHHHTCCEEEEESSCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEECchHHHHHHHHHHhhCCCEEEEecccc
Confidence 0 0123445554 7999998623222222233344555666655544
No 184
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=45.38 E-value=25 Score=33.10 Aligned_cols=57 Identities=18% Similarity=0.186 Sum_probs=37.8
Q ss_pred CCceEEEEEeCCc-h-HHHHHHHHhhcCCCCceEEEEEeCCCCCC-----------CchHHHHHHHCCCCEEEec
Q 020508 127 PKYKVAVLASKQE-H-CLVDFLYGWQEGKLPVEITCVISNHDRGP-----------NSHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 127 ~~~ri~v~~Sg~g-~-~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~-----------~~~~~~~a~~~gIp~~~~~ 188 (325)
+.+||+|..||.- | .+..++.. . +.+|.+|..+..... -..+.++|+++|||++.++
T Consensus 8 ~~~kVlVa~SGGvDSsv~a~lL~~--~---G~~V~~v~~~~~~~~~~~~~c~~~~d~~~a~~va~~lGIp~~vv~ 77 (376)
T 2hma_A 8 SKTRVVVGMSGGVDSSVTALLLKE--Q---GYDVIGIFMKNWDDTDENGVCTATEDYKDVVAVADQIGIPYYSVN 77 (376)
T ss_dssp GGSEEEEECCSSHHHHHHHHHHHH--T---TCEEEEEEEECCCCCC----CHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCeEEEEEeCHHHHHHHHHHHHH--c---CCcEEEEEEECCCcccccccCCCHHHHHHHHHHHHHhCCcEEEEe
Confidence 3569999999863 4 33444433 2 478888877553211 1236889999999999876
No 185
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}
Probab=44.34 E-value=13 Score=32.48 Aligned_cols=69 Identities=12% Similarity=0.181 Sum_probs=36.6
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCC
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 206 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 206 (325)
++||+|++.|. |+.+...+.. . +++++.++ +++ ...+.++++++|+.+. .+ ..+.++++|
T Consensus 10 ~m~i~iiG~G~mG~~~a~~l~~--~---g~~~v~~~-~~~---~~~~~~~~~~~g~~~~--~~--------~~~~~~~~D 70 (266)
T 3d1l_A 10 DTPIVLIGAGNLATNLAKALYR--K---GFRIVQVY-SRT---EESARELAQKVEAEYT--TD--------LAEVNPYAK 70 (266)
T ss_dssp GCCEEEECCSHHHHHHHHHHHH--H---TCCEEEEE-CSS---HHHHHHHHHHTTCEEE--SC--------GGGSCSCCS
T ss_pred CCeEEEEcCCHHHHHHHHHHHH--C---CCeEEEEE-eCC---HHHHHHHHHHcCCcee--CC--------HHHHhcCCC
Confidence 47999998875 5555443332 2 35544444 332 2345566677787653 21 011223567
Q ss_pred EEEEecccc
Q 020508 207 FLVLARYMQ 215 (325)
Q Consensus 207 liv~~g~~~ 215 (325)
+++++--..
T Consensus 71 vvi~av~~~ 79 (266)
T 3d1l_A 71 LYIVSLKDS 79 (266)
T ss_dssp EEEECCCHH
T ss_pred EEEEecCHH
Confidence 777765433
No 186
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=44.29 E-value=41 Score=32.72 Aligned_cols=57 Identities=7% Similarity=-0.046 Sum_probs=39.1
Q ss_pred CCceEEEEEeCCc--hHHHHHHHHhhcCCCCceEEEEEeCCCCC---CCchHHHHHHHCCC-CEEEec
Q 020508 127 PKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRG---PNSHVIRFLERHGI-PYHYLC 188 (325)
Q Consensus 127 ~~~ri~v~~Sg~g--~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~---~~~~~~~~a~~~gI-p~~~~~ 188 (325)
+..||++..||.- +++..++.. . +.+|++|..+.... .-..+.+.|+++|| |++.++
T Consensus 9 ~~~KVvVA~SGGlDSSvll~~L~e--~---G~eViavtvd~Gq~~~~ele~a~~~A~~lGi~~~~vvD 71 (455)
T 1k92_A 9 VGQRIGIAFSGGLDTSAALLWMRQ--K---GAVPYAYTANLGQPDEEDYDAIPRRAMEYGAENARLID 71 (455)
T ss_dssp TTSEEEEECCSSHHHHHHHHHHHH--T---TCEEEEEEEECCCTTCSCTTHHHHHHHHHTCSEEEEEE
T ss_pred CCCeEEEEEcChHHHHHHHHHHHH--c---CCEEEEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 4569999999863 444445433 2 47888887776432 12568999999999 787665
No 187
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B
Probab=43.73 E-value=91 Score=28.74 Aligned_cols=114 Identities=12% Similarity=0.115 Sum_probs=65.3
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCC
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 206 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 206 (325)
.++|+|++.|. |..+...+.. . .+.+|. +.++.. . . .+.+.+.|+.+. . ++.+.++++|
T Consensus 163 g~~vgIIG~G~IG~~vA~~l~~--~--~G~~V~--~~d~~~--~-~-~~~~~~~g~~~~--~--------~l~ell~~aD 222 (348)
T 2w2k_A 163 GHVLGAVGLGAIQKEIARKAVH--G--LGMKLV--YYDVAP--A-D-AETEKALGAERV--D--------SLEELARRSD 222 (348)
T ss_dssp TCEEEEECCSHHHHHHHHHHHH--T--TCCEEE--EECSSC--C-C-HHHHHHHTCEEC--S--------SHHHHHHHCS
T ss_pred CCEEEEEEECHHHHHHHHHHHH--h--cCCEEE--EECCCC--c-c-hhhHhhcCcEEe--C--------CHHHHhccCC
Confidence 46899987765 5555444430 1 135554 333321 1 1 233455565432 1 1223445789
Q ss_pred EEEEec-----cccccChhHHhhcCCCEEEEcCCCCCCCCCC----cHHHHHHHhCCcEeEEEEEEecCC
Q 020508 207 FLVLAR-----YMQILSGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQAFDAGVKLIGATSHFVTEE 267 (325)
Q Consensus 207 liv~~g-----~~~il~~~~l~~~~~~~iNiHpslLP~yRG~----~pi~~ai~~G~~~~GvTvh~v~~~ 267 (325)
+++++- ...++..+.++..+.+.+=+.-| ||. ..+..++.+| ...|+-++....+
T Consensus 223 vVil~vp~~~~t~~li~~~~l~~mk~gailin~s-----rg~~vd~~aL~~aL~~~-~i~gaglDv~~~E 286 (348)
T 2w2k_A 223 CVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTA-----RGPVISQDALIAALKSG-KLLSAGLDVHEFE 286 (348)
T ss_dssp EEEECCCCSGGGTTCBCHHHHHHSCTTEEEEECS-----CGGGBCHHHHHHHHHTT-SEEEEEESSCTTT
T ss_pred EEEEeCCCChHHHHHhhHHHHhcCCCCCEEEECC-----CCchhCHHHHHHHHHhC-CceEEEeccCCCC
Confidence 999984 44678888888887665444433 453 2567778876 5677777777655
No 188
>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X*
Probab=43.38 E-value=68 Score=29.71 Aligned_cols=69 Identities=7% Similarity=0.135 Sum_probs=47.1
Q ss_pred hHHHHHHHCCCCEEEec-CCCChhH---------HHHHHHhcCCCEEEEecc----------------ccccChhHHhhc
Q 020508 172 HVIRFLERHGIPYHYLC-AKENERE---------EELLELVQNTDFLVLARY----------------MQILSGKFLRSY 225 (325)
Q Consensus 172 ~~~~~a~~~gIp~~~~~-~~~~~~~---------~~~~~~l~~~Dliv~~g~----------------~~il~~~~l~~~ 225 (325)
++...+.++|+.+.... ......+ .++.+.++++|++..-.| .+.+.++.++..
T Consensus 187 Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~d~~eav~~aDvvy~~~w~s~g~~~~~~~~~r~~~y~vt~e~l~~a 266 (324)
T 1js1_X 187 SFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYTGDNYGQILSTDRNWTVGDRQMAVT 266 (324)
T ss_dssp HHHHHHHTSSSEEEEECCTTCCCCHHHHTTCEEESCHHHHHTTCSEEEECCCCCCSTTCTTCCCCCCTTSSBCHHHHTTS
T ss_pred HHHHHHHHCCCEEEEeCCcccCCChhhccceEEECCHHHHhCCCCEEEecCcccCCCccccchHHHhcCcccCHHHHHhc
Confidence 45667778888876554 2211111 123455668999998666 367888999888
Q ss_pred CCCEEEEcCCCCCCCCCC
Q 020508 226 GKDVINIHHGLLPSFKGG 243 (325)
Q Consensus 226 ~~~~iNiHpslLP~yRG~ 243 (325)
+ .++-+|| ||.+||.
T Consensus 267 ~-~ai~MHc--LP~~Rg~ 281 (324)
T 1js1_X 267 N-NAYFMHC--LPVRRNM 281 (324)
T ss_dssp S-SCEEECC--SCCCBTT
T ss_pred C-CcEEECC--CCCCCCc
Confidence 8 8999996 7888873
No 189
>1p8a_A Protein tyrosine phosphatase; hydrolase; NMR {Tritrichomonas foetus} SCOP: c.44.1.1
Probab=43.11 E-value=40 Score=27.00 Aligned_cols=82 Identities=10% Similarity=0.053 Sum_probs=47.2
Q ss_pred CCceEEEEEeCCc--hHH-HHHHHHhhcCCCCceEEEEEeCC-CCCCCchHHHHHHHCCCCEEEec-CCCChhHHHHHHH
Q 020508 127 PKYKVAVLASKQE--HCL-VDFLYGWQEGKLPVEITCVISNH-DRGPNSHVIRFLERHGIPYHYLC-AKENEREEELLEL 201 (325)
Q Consensus 127 ~~~ri~v~~Sg~g--~~l-~~Ll~~~~~~~l~~~I~~Vvt~~-~~~~~~~~~~~a~~~gIp~~~~~-~~~~~~~~~~~~~ 201 (325)
.++||.|+.+|+- |.+ +.++.....+...+.-.++-..+ ..+.+....+.++++||++.... +... + + .
T Consensus 3 ~~~~VLFVC~gN~cRSpmAEal~~~~~~~~~~v~SAGt~~~~~g~~~~p~a~~~l~e~Gid~s~~~sr~l~--~-~---~ 76 (146)
T 1p8a_A 3 EKKAVLFVCLGNICRSPACEGICRDMVGDKLIIDSAATSGFHVGQSPDTRSQKVCKSNGVDISKQRARQIT--K-A---D 76 (146)
T ss_dssp CCCCEEEESSSSCSSSTTHHHHHHHHHSSCSSCEEECSCTTSCSCSCTHHHHHHHHHHSCCCCCCCCCCCC--S-H---H
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHHhcCCCEEEEeeecCCcccCCCCCHHHHHHHHHcCCChhcCeeccCC--H-h---H
Confidence 4578988888873 444 44666554443434433433311 22335667889999999984222 2111 1 1 1
Q ss_pred hcCCCEEEEeccc
Q 020508 202 VQNTDFLVLARYM 214 (325)
Q Consensus 202 l~~~Dliv~~g~~ 214 (325)
+..+|+|+...-.
T Consensus 77 ~~~~DlIi~m~~~ 89 (146)
T 1p8a_A 77 FSKFDVIAALDQS 89 (146)
T ss_dssp HHSCSEEEESSHH
T ss_pred hhcCCEEEEeChH
Confidence 2378999998653
No 190
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=42.31 E-value=62 Score=27.01 Aligned_cols=55 Identities=18% Similarity=0.125 Sum_probs=34.9
Q ss_pred ceEEEEEeCCc-h-HHHHHHHHhhcCCCCceEEEEEeCCCCCCC---chHHHHHHHCCCCEEEec
Q 020508 129 YKVAVLASKQE-H-CLVDFLYGWQEGKLPVEITCVISNHDRGPN---SHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 129 ~ri~v~~Sg~g-~-~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~---~~~~~~a~~~gIp~~~~~ 188 (325)
.|+++..||.- | .+..++.. .+ .++.+|..+...... ..+.++|+++|||++.++
T Consensus 4 ~~v~v~lSGG~DS~~ll~ll~~--~~---~~v~~~~~~~~~~~~~e~~~a~~~a~~lgi~~~~~~ 63 (219)
T 3bl5_A 4 EKAIVVFSGGQDSTTCLLWALK--EF---EEVETVTFHYNQRHSQEVEVAKSIAEKLGVKNHLLD 63 (219)
T ss_dssp CEEEEECCSSHHHHHHHHHHHH--HC---SEEEEEEEESSCTTCHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCEEEEccCcHHHHHHHHHHHH--cC---CceEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEe
Confidence 58999999852 4 33344433 22 467776655532111 246788999999998776
No 191
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=41.69 E-value=73 Score=28.39 Aligned_cols=90 Identities=17% Similarity=0.152 Sum_probs=50.1
Q ss_pred CCceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCC
Q 020508 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (325)
Q Consensus 127 ~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 205 (325)
+.++++|++.|. |..+...+.. . +.+|. +.++. ..-.+.+.+.|+.+... .++.+.++++
T Consensus 156 ~g~~v~IiG~G~iG~~~a~~l~~--~---G~~V~--~~d~~----~~~~~~~~~~g~~~~~~--------~~l~~~l~~a 216 (300)
T 2rir_A 156 HGSQVAVLGLGRTGMTIARTFAA--L---GANVK--VGARS----SAHLARITEMGLVPFHT--------DELKEHVKDI 216 (300)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHH--T---TCEEE--EEESS----HHHHHHHHHTTCEEEEG--------GGHHHHSTTC
T ss_pred CCCEEEEEcccHHHHHHHHHHHH--C---CCEEE--EEECC----HHHHHHHHHCCCeEEch--------hhHHHHhhCC
Confidence 357899988764 4444433332 1 34543 23332 11123334567643311 1244555689
Q ss_pred CEEEEeccccccChhHHhhcCCCEEEEcCC
Q 020508 206 DFLVLARYMQILSGKFLRSYGKDVINIHHG 235 (325)
Q Consensus 206 Dliv~~g~~~il~~~~l~~~~~~~iNiHps 235 (325)
|+++++--..++.++.++..+.+.+=+--+
T Consensus 217 DvVi~~~p~~~i~~~~~~~mk~g~~lin~a 246 (300)
T 2rir_A 217 DICINTIPSMILNQTVLSSMTPKTLILDLA 246 (300)
T ss_dssp SEEEECCSSCCBCHHHHTTSCTTCEEEECS
T ss_pred CEEEECCChhhhCHHHHHhCCCCCEEEEEe
Confidence 999998777888888888776554333333
No 192
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=41.35 E-value=28 Score=33.60 Aligned_cols=60 Identities=15% Similarity=0.088 Sum_probs=40.3
Q ss_pred CceEEEEEeCCc--hHHHHHHHHhhcCCCCceEEEEEeCCCCC-C-----CchHHHHHHHCCCCEEEec
Q 020508 128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRG-P-----NSHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 128 ~~ri~v~~Sg~g--~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~-~-----~~~~~~~a~~~gIp~~~~~ 188 (325)
..||+|-+||.. ++|-.++..++. ..+.++.+|..++.-. . ...+.++|+++|||++...
T Consensus 18 ~~~vlVa~SGG~DS~~Ll~ll~~~~~-~~~~~v~avhvdhglrg~~s~~~~~~v~~~~~~lgi~~~v~~ 85 (464)
T 3a2k_A 18 GAAVIVGVSGGPDSLALLHVFLSLRD-EWKLQVIAAHVDHMFRGRESEEEMEFVKRFCVERRILCETAQ 85 (464)
T ss_dssp SSBEEEECCSSHHHHHHHHHHHHHHH-TTTCBCEEEEEECTTCTHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEEEcCcHHHHHHHHHHHHHHH-HcCCeEEEEEEECCCCccccHHHHHHHHHHHHHcCCcEEEEE
Confidence 458999999863 455556655432 2356788887777432 1 1247889999999998765
No 193
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=41.29 E-value=43 Score=32.27 Aligned_cols=58 Identities=12% Similarity=0.082 Sum_probs=38.2
Q ss_pred CCCceEEEEEeCCc--hHHHHHHHHhhcCCCCceEEEEEeCCCCCCC-chHHHHHHHCCC-CEEEec
Q 020508 126 DPKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPN-SHVIRFLERHGI-PYHYLC 188 (325)
Q Consensus 126 ~~~~ri~v~~Sg~g--~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~-~~~~~~a~~~gI-p~~~~~ 188 (325)
..|.||++..||.- +.+..++.. . +.+|++|..+.....+ ..+.+.|+++|| |++.++
T Consensus 12 ~~~~KVVVA~SGGlDSSv~a~~Lke--~---G~eViavt~d~Gq~~Ele~A~~vA~~lGi~~~~VvD 73 (421)
T 1vl2_A 12 HMKEKVVLAYSGGLDTSVILKWLCE--K---GFDVIAYVANVGQKDDFVAIKEKALKTGASKVYVED 73 (421)
T ss_dssp --CCEEEEECCSSHHHHHHHHHHHH--T---TCEEEEEEEESSCCCCHHHHHHHHHHHTCSEEEEEE
T ss_pred cccCCEEEEeCCcHHHHHHHHHHHH--C---CCeEEEEEEEcCCHHHHHHHHHHHHHcCCceEEEEe
Confidence 35779999999962 343444432 2 4788888776532222 457889999999 888776
No 194
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A
Probab=41.17 E-value=88 Score=29.12 Aligned_cols=158 Identities=12% Similarity=0.140 Sum_probs=83.1
Q ss_pred CCceEEEEEeCC-chHHHHHHHHhhcCCCCce-EEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcC
Q 020508 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVE-ITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQN 204 (325)
Q Consensus 127 ~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~-I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~ 204 (325)
..++|+|++-|. |..+...+.. .+.+ |.+ .++.. .. .+.+.+.|+.. .. ++.+.+++
T Consensus 163 ~g~tvgIIG~G~IG~~vA~~l~~-----~G~~~V~~--~d~~~---~~-~~~~~~~g~~~--~~--------~l~ell~~ 221 (364)
T 2j6i_A 163 EGKTIATIGAGRIGYRVLERLVP-----FNPKELLY--YDYQA---LP-KDAEEKVGARR--VE--------NIEELVAQ 221 (364)
T ss_dssp TTCEEEEECCSHHHHHHHHHHGG-----GCCSEEEE--ECSSC---CC-HHHHHHTTEEE--CS--------SHHHHHHT
T ss_pred CCCEEEEECcCHHHHHHHHHHHh-----CCCcEEEE--ECCCc---cc-hhHHHhcCcEe--cC--------CHHHHHhc
Confidence 346899987665 5555444432 2454 543 33321 11 34566777432 21 13344558
Q ss_pred CCEEEEeccc-----cccChhHHhhcCCCEEEEcCCCCCCCCCC----cHHHHHHHhCCcEeEEEEEEecCC--CCCCCe
Q 020508 205 TDFLVLARYM-----QILSGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQAFDAGVKLIGATSHFVTEE--LDAGPI 273 (325)
Q Consensus 205 ~Dliv~~g~~-----~il~~~~l~~~~~~~iNiHpslLP~yRG~----~pi~~ai~~G~~~~GvTvh~v~~~--~D~G~I 273 (325)
+|+++++--. .++.++.++..+.+.+=+--| ||. ..+..|+.+|. ..|+-+=..+.+ ...-|.
T Consensus 222 aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~a-----rG~~vd~~aL~~aL~~g~-i~gA~LDVf~~EP~~~~~pL 295 (364)
T 2j6i_A 222 ADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTA-----RGAICVAEDVAAALESGQ-LRGYGGDVWFPQPAPKDHPW 295 (364)
T ss_dssp CSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECS-----CGGGBCHHHHHHHHHHTS-EEEEEESCCSSSSCCTTCHH
T ss_pred CCEEEECCCCChHHHHHhCHHHHhhCCCCCEEEECC-----CCchhCHHHHHHHHHcCC-CcEEEEecCCCCCCCCCChH
Confidence 9999987543 688888888887665434333 563 35777888874 444443333333 222233
Q ss_pred EEE--E---EEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCc
Q 020508 274 IEQ--M---VERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELR 313 (325)
Q Consensus 274 i~Q--~---~~~I~~~dt~~~l~~r~~~~~~~ll~~al~~i~~g~ 313 (325)
+.. . .+-+.|.-...+...+ ....+.+.+.+..+.+|+
T Consensus 296 ~~~~~~~~~nvilTPHia~~t~e~~--~~~~~~~~~nl~~~~~g~ 338 (364)
T 2j6i_A 296 RDMRNKYGAGNAMTPHYSGTTLDAQ--TRYAQGTVNILESFFTGK 338 (364)
T ss_dssp HHCCCTTSCCEEECCSCGGGSHHHH--HHHHHHHHHHHHHHHTTC
T ss_pred HhccCCccCcEEECCccCcCCHHHH--HHHHHHHHHHHHHHHcCC
Confidence 332 2 3455555332222221 122345566677777776
No 195
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*
Probab=41.05 E-value=70 Score=29.27 Aligned_cols=152 Identities=15% Similarity=0.178 Sum_probs=80.5
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCC
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 206 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 206 (325)
.+||+|++.|. |..+...+.. . +++|.+ .++.. .. +.+.+.|+.+ . ++.+.++++|
T Consensus 150 g~~vgIIG~G~iG~~iA~~l~~--~---G~~V~~--~d~~~---~~--~~~~~~g~~~---~--------~l~~~l~~aD 206 (334)
T 2dbq_A 150 GKTIGIIGLGRIGQAIAKRAKG--F---NMRILY--YSRTR---KE--EVERELNAEF---K--------PLEDLLRESD 206 (334)
T ss_dssp TCEEEEECCSHHHHHHHHHHHH--T---TCEEEE--ECSSC---CH--HHHHHHCCEE---C--------CHHHHHHHCS
T ss_pred CCEEEEEccCHHHHHHHHHHHh--C---CCEEEE--ECCCc---ch--hhHhhcCccc---C--------CHHHHHhhCC
Confidence 47899998775 5555554433 1 356543 33321 12 4455667632 1 1223445789
Q ss_pred EEEEecc-----ccccChhHHhhcCCCEEEEcCCCCCCCCCCc----HHHHHHHhCCcEeEEEEEEecCCCCC-CCeEEE
Q 020508 207 FLVLARY-----MQILSGKFLRSYGKDVINIHHGLLPSFKGGK----PAKQAFDAGVKLIGATSHFVTEELDA-GPIIEQ 276 (325)
Q Consensus 207 liv~~g~-----~~il~~~~l~~~~~~~iNiHpslLP~yRG~~----pi~~ai~~G~~~~GvTvh~v~~~~D~-G~Ii~Q 276 (325)
+++++-- ..++..++++..+.+.+-+.-| ||.- .+..++.+| ...|+-++....+-.. -+.+.-
T Consensus 207 vVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~s-----rg~~v~~~aL~~aL~~~-~i~ga~lDv~~~EP~~~~~L~~~ 280 (334)
T 2dbq_A 207 FVVLAVPLTRETYHLINEERLKLMKKTAILINIA-----RGKVVDTNALVKALKEG-WIAGAGLDVFEEEPYYNEELFKL 280 (334)
T ss_dssp EEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECS-----CGGGBCHHHHHHHHHHT-SSSEEEESCCSSSSCCCHHHHHC
T ss_pred EEEECCCCChHHHHhhCHHHHhcCCCCcEEEECC-----CCcccCHHHHHHHHHhC-CeeEEEecCCCCCCCCCchhhcC
Confidence 9988752 3567777777776554445555 5532 466777776 4556666665544211 122222
Q ss_pred EEEeCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHhCc
Q 020508 277 MVERVSHR---DNLRTFVQKSEDVEKQCLAKAIKSYCELR 313 (325)
Q Consensus 277 ~~~~I~~~---dt~~~l~~r~~~~~~~ll~~al~~i~~g~ 313 (325)
..+-+.|. .|.+.. ....+.+.+.+..+.+|+
T Consensus 281 ~~vi~tPh~~~~t~~~~-----~~~~~~~~~n~~~~~~g~ 315 (334)
T 2dbq_A 281 DNVVLTPHIGSASFGAR-----EGMAELVAKNLIAFKRGE 315 (334)
T ss_dssp TTEEECSSCTTCSHHHH-----HHHHHHHHHHHHHHHTTC
T ss_pred CCEEECCccCCCcHHHH-----HHHHHHHHHHHHHHHcCC
Confidence 23333333 333332 223445556666667775
No 196
>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis}
Probab=40.98 E-value=1.4e+02 Score=28.50 Aligned_cols=101 Identities=12% Similarity=0.132 Sum_probs=59.3
Q ss_pred CceEEEEEe-----CCch-HHHHHHHHhhcCCCCceEEEEEeCCCCCC-CchHH----HHHHHCCCCEEEecCCCChhHH
Q 020508 128 KYKVAVLAS-----KQEH-CLVDFLYGWQEGKLPVEITCVISNHDRGP-NSHVI----RFLERHGIPYHYLCAKENEREE 196 (325)
Q Consensus 128 ~~ri~v~~S-----g~g~-~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~-~~~~~----~~a~~~gIp~~~~~~~~~~~~~ 196 (325)
.+||++++- |.|. ....++..+. .++.++. ++.|+... ...+. +.|++.|..+....
T Consensus 188 Glkva~vgd~~~s~Gd~nnVa~Sli~~l~--~lG~~v~--l~~P~~~~~~p~~~~~a~~~a~~~G~~v~~~~-------- 255 (418)
T 2yfk_A 188 GKKVAMTWAYSPSYGKPLSVPQGIVGLMT--RLGMDVV--LAHPEGYEIMPEVEEVAKKNAAEFGGNFTKTN-------- 255 (418)
T ss_dssp TCEEEEECCCCSSSCCCSHHHHHHHHHHG--GGTCEEE--EECCTTCCCCHHHHHHHHHHHHHHSSEEEEES--------
T ss_pred CCEEEEEeccccccCccchHHHHHHHHHH--HcCCEEE--EECCccccCCHHHHHHHHHHHHHcCCEEEEEc--------
Confidence 468998852 4443 3345555543 2356654 33343221 22333 44667887766443
Q ss_pred HHHHHhcCCCEEEEecc------------------------------------ccccChhHHhhcCC-CEEEEcCCCCCC
Q 020508 197 ELLELVQNTDFLVLARY------------------------------------MQILSGKFLRSYGK-DVINIHHGLLPS 239 (325)
Q Consensus 197 ~~~~~l~~~Dliv~~g~------------------------------------~~il~~~~l~~~~~-~~iNiHpslLP~ 239 (325)
++.+.++++|++..-.| .+.+.+++++..+. .++-+|| ||.
T Consensus 256 d~~eav~~ADVVytd~W~sm~~Q~ER~~~~~~g~~~~~~~~~~~~~~~~~~~~~y~vt~elm~~ak~~dai~MHc--LPa 333 (418)
T 2yfk_A 256 SMAEAFKDADVVYPKSWAPFAAMEKRTELYGNGDQAGIDQLEQELLSQNKKHKDWECTEELMKTTKDGKALYMHC--LPA 333 (418)
T ss_dssp CHHHHHTTCSEEEECCCCCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHGGGTTCCBCHHHHHTSGGGCCEECCC--SCC
T ss_pred CHHHHhcCCCEEEEccccchhHHHHHhhhhccccchhhhhhhhhhhhHHHHHhhcCCCHHHHHhcCCCCeEEECC--CCC
Confidence 23455668898887422 35678888887754 6888997 589
Q ss_pred CC-C
Q 020508 240 FK-G 242 (325)
Q Consensus 240 yR-G 242 (325)
+| |
T Consensus 334 ~r~~ 337 (418)
T 2yfk_A 334 DITG 337 (418)
T ss_dssp CEET
T ss_pred CCcc
Confidence 85 5
No 197
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}
Probab=40.86 E-value=48 Score=30.53 Aligned_cols=71 Identities=13% Similarity=0.099 Sum_probs=39.1
Q ss_pred CCceEEEEE-eCC-chH--H----HHHHHHhhcCCC------C--ceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCC
Q 020508 127 PKYKVAVLA-SKQ-EHC--L----VDFLYGWQEGKL------P--VEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK 190 (325)
Q Consensus 127 ~~~ri~v~~-Sg~-g~~--l----~~Ll~~~~~~~l------~--~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~ 190 (325)
+++||++++ .|. |.. + ..+.+. +.. . .++ + +++++ .....++|+++|+|..+ .
T Consensus 5 ~~irigiiG~~G~~g~~~h~~~~~~~~~~~---~~~~l~~~~~~~~~~-a-v~~~~---~~~a~~~a~~~~~~~~~-~-- 73 (383)
T 3oqb_A 5 QRLGLIMNGVTGRMGLNQHLIRSIVAIRDQ---GGVRLKNGDRIMPDP-I-LVGRS---AEKVEALAKRFNIARWT-T-- 73 (383)
T ss_dssp EEEEEEEESTTSTHHHHTTTTTTHHHHHHH---TSEECTTSCEEEEEE-E-EECSS---SHHHHHHHHHTTCCCEE-S--
T ss_pred ceeEEEEEeccchhhhhhhHHHHHHHHhhc---CceeecCCcccceee-E-EEcCC---HHHHHHHHHHhCCCccc-C--
Confidence 468999999 887 332 2 333322 211 1 122 3 44443 24568889999998432 2
Q ss_pred CChhHHHHHHHhc--CCCEEEEeccc
Q 020508 191 ENEREEELLELVQ--NTDFLVLARYM 214 (325)
Q Consensus 191 ~~~~~~~~~~~l~--~~Dliv~~g~~ 214 (325)
++.++|. ++|+++++.-.
T Consensus 74 ------~~~~ll~~~~iD~V~i~tp~ 93 (383)
T 3oqb_A 74 ------DLDAALADKNDTMFFDAATT 93 (383)
T ss_dssp ------CHHHHHHCSSCCEEEECSCS
T ss_pred ------CHHHHhcCCCCCEEEECCCc
Confidence 1233443 58888876543
No 198
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A
Probab=40.54 E-value=23 Score=32.46 Aligned_cols=45 Identities=7% Similarity=0.064 Sum_probs=26.1
Q ss_pred CceEEEEEeCC-ch-HHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCC
Q 020508 128 KYKVAVLASKQ-EH-CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGI 182 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~-~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gI 182 (325)
|+||+|++.|. |. .....+.. . .+.++++|+... . ..++|+++++
T Consensus 2 ~~rvgiiG~G~~g~~~~~~~l~~--~--~~~~l~av~d~~-~-----~~~~a~~~~~ 48 (349)
T 3i23_A 2 TVKMGFIGFGKSANRYHLPYVMI--R--ETLEVKTIFDLH-V-----NEKAAAPFKE 48 (349)
T ss_dssp CEEEEEECCSHHHHHTTHHHHTT--C--TTEEEEEEECTT-C-----CHHHHHHHHT
T ss_pred eeEEEEEccCHHHHHHHHHHHhh--C--CCeEEEEEECCC-H-----HHHHHHhhCC
Confidence 57999998875 33 22222322 1 258888887643 1 3567777433
No 199
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}
Probab=40.21 E-value=44 Score=30.54 Aligned_cols=69 Identities=16% Similarity=0.116 Sum_probs=0.0
Q ss_pred cCCCCCceEEEEEeCC-chH-HHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHH
Q 020508 123 PDIDPKYKVAVLASKQ-EHC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLE 200 (325)
Q Consensus 123 ~~~~~~~ri~v~~Sg~-g~~-l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~ 200 (325)
+.+.+++||++++.|. |.. ....+.... +.++++|+.... .+..++++.+-.+-+ +.+
T Consensus 2 ~~M~~~~rvgiiG~G~~g~~~~~~~~~~~~----~~~l~av~d~~~-------~~~~~~~~~~~~~~~---------~~~ 61 (352)
T 3kux_A 2 NAMADKIKVGLLGYGYASKTFHAPLIMGTP----GLELAGVSSSDA-------SKVHADWPAIPVVSD---------PQM 61 (352)
T ss_dssp CTTTCCEEEEEECCSHHHHHTHHHHHHTST----TEEEEEEECSCH-------HHHHTTCSSCCEESC---------HHH
T ss_pred CcccCCceEEEECCCHHHHHHHHHHHhhCC----CcEEEEEECCCH-------HHHHhhCCCCceECC---------HHH
Q ss_pred Hhc--CCCEEEEe
Q 020508 201 LVQ--NTDFLVLA 211 (325)
Q Consensus 201 ~l~--~~Dliv~~ 211 (325)
++. ++|+++++
T Consensus 62 ll~~~~vD~V~i~ 74 (352)
T 3kux_A 62 LFNDPSIDLIVIP 74 (352)
T ss_dssp HHHCSSCCEEEEC
T ss_pred HhcCCCCCEEEEe
No 200
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A
Probab=39.94 E-value=37 Score=31.22 Aligned_cols=34 Identities=15% Similarity=0.099 Sum_probs=20.2
Q ss_pred CCceEEEEEeCC-chH-HHHHHHHhhcCCCCceEEEEEeC
Q 020508 127 PKYKVAVLASKQ-EHC-LVDFLYGWQEGKLPVEITCVISN 164 (325)
Q Consensus 127 ~~~ri~v~~Sg~-g~~-l~~Ll~~~~~~~l~~~I~~Vvt~ 164 (325)
+++||+|++.|. |.. ....+.. .+ +.++++|+..
T Consensus 4 ~~~rvgiiG~G~~g~~~~~~~l~~--~~--~~~l~av~d~ 39 (358)
T 3gdo_A 4 DTIKVGILGYGLSGSVFHGPLLDV--LD--EYQISKIMTS 39 (358)
T ss_dssp TCEEEEEECCSHHHHHTTHHHHTT--CT--TEEEEEEECS
T ss_pred CcceEEEEccCHHHHHHHHHHHhh--CC--CeEEEEEEcC
Confidence 468999998875 332 2223322 12 4788887754
No 201
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=39.68 E-value=1.5e+02 Score=27.07 Aligned_cols=100 Identities=10% Similarity=0.065 Sum_probs=52.8
Q ss_pred CceEEEEEeCC-ch--HHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCC------------C
Q 020508 128 KYKVAVLASKQ-EH--CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE------------N 192 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~--~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~------------~ 192 (325)
++||+++..+. |+ .+..|.+.+++. +++|..+.+.. ..+..++.|++++.++... +
T Consensus 7 m~kIl~~~~~~~Gh~~p~~~la~~L~~~--G~~V~~~~~~~-------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (430)
T 2iyf_A 7 PAHIAMFSIAAHGHVNPSLEVIRELVAR--GHRVTYAIPPV-------FADKVAATGPRPVLYHSTLPGPDADPEAWGST 77 (430)
T ss_dssp -CEEEEECCSCHHHHGGGHHHHHHHHHT--TCEEEEEECGG-------GHHHHHTTSCEEEECCCCSCCTTSCGGGGCSS
T ss_pred cceEEEEeCCCCccccchHHHHHHHHHC--CCeEEEEeCHH-------HHHHHHhCCCEEEEcCCcCccccccccccchh
Confidence 46999876544 43 345566555443 57876544322 2455677899887766210 0
Q ss_pred hh-------------HHHHHHHhc--CCCEEEEeccccccChhHHhhcCCCEEEEcCCCC
Q 020508 193 ER-------------EEELLELVQ--NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLL 237 (325)
Q Consensus 193 ~~-------------~~~~~~~l~--~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslL 237 (325)
.. ...+.+.++ +||++++-.+.. ....+....+..++.+.++..
T Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~d~~~~-~~~~~A~~~giP~v~~~~~~~ 136 (430)
T 2iyf_A 78 LLDNVEPFLNDAIQALPQLADAYADDIPDLVLHDITSY-PARVLARRWGVPAVSLSPNLV 136 (430)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCCSEEEEETTCH-HHHHHHHHHTCCEEEEESSCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEECCccH-HHHHHHHHcCCCEEEEecccc
Confidence 00 023334444 799999764421 112233344556776665543
No 202
>3jvi_A Protein tyrosine phosphatase; niaid, ssgcid, seattle structural genomics center for infect disease, parasitic protozoan, dysentery; 1.80A {Entamoeba histolytica} PDB: 3js5_A* 3ily_A 3ido_A*
Probab=39.67 E-value=55 Score=26.77 Aligned_cols=81 Identities=9% Similarity=0.024 Sum_probs=43.7
Q ss_pred CceEEEEEeCCc--hHHHH-HHHHh-hcCCCC--ceEEEEEeCC---CCCCCchHHHHHHHCCCCEEEecCCCChhHHHH
Q 020508 128 KYKVAVLASKQE--HCLVD-FLYGW-QEGKLP--VEITCVISNH---DRGPNSHVIRFLERHGIPYHYLCAKENEREEEL 198 (325)
Q Consensus 128 ~~ri~v~~Sg~g--~~l~~-Ll~~~-~~~~l~--~~I~~Vvt~~---~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~ 198 (325)
++||.|..+|+- |.+.+ +++.. ++..+. .+|.---+.+ ..+.+....+.++++||++-+.++.. . ++.
T Consensus 4 m~~vLFVC~gN~cRSpmAE~~~~~~~~~~gl~~~~~v~SAGt~~~~~G~~~~~~a~~~l~~~Gid~~~~ar~l--~-~~~ 80 (161)
T 3jvi_A 4 SMKLLFVCLGNICRSPAAEAVMKKVIQNHHLTEKYICDSAGTCSYHEGQQADSRMRKVGKSRGYQVDSISRPV--V-SSD 80 (161)
T ss_dssp CEEEEEEESSSSSHHHHHHHHHHHHHHHTTCGGGEEEEEEESCCTTTTCBCCHHHHHHHHHTTCCCCCBCCBC--C-HHH
T ss_pred CcEEEEECCCchhHHHHHHHHHHHHHHHcCCCCcEEEEeeecCCcccCCCCCHHHHHHHHHcCcCCCCeeeEC--C-HHH
Confidence 578988888874 55544 54442 222221 3332222222 12234567889999999983222221 1 111
Q ss_pred HHHhcCCCEEEEeccc
Q 020508 199 LELVQNTDFLVLARYM 214 (325)
Q Consensus 199 ~~~l~~~Dliv~~g~~ 214 (325)
+..+|+|+...-.
T Consensus 81 ---~~~~DlIl~Md~~ 93 (161)
T 3jvi_A 81 ---FKNFDYIFAMDND 93 (161)
T ss_dssp ---HHHCSEEEESSHH
T ss_pred ---hcCCCEEEEeChH
Confidence 2268999998654
No 203
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=38.91 E-value=2.3e+02 Score=27.64 Aligned_cols=112 Identities=15% Similarity=0.179 Sum_probs=66.4
Q ss_pred CCceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCC
Q 020508 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (325)
Q Consensus 127 ~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 205 (325)
..++|+|++.|. |..+...+... +.+|.+ .++.. . .+.+.+.|+... + +.+.++++
T Consensus 141 ~g~~vgIIG~G~IG~~vA~~l~~~-----G~~V~~--~d~~~----~-~~~a~~~g~~~~--~---------l~e~~~~a 197 (529)
T 1ygy_A 141 FGKTVGVVGLGRIGQLVAQRIAAF-----GAYVVA--YDPYV----S-PARAAQLGIELL--S---------LDDLLARA 197 (529)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTT-----TCEEEE--ECTTS----C-HHHHHHHTCEEC--C---------HHHHHHHC
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhC-----CCEEEE--ECCCC----C-hhHHHhcCcEEc--C---------HHHHHhcC
Confidence 347899988775 55554444321 355543 34421 1 344677776432 1 22344578
Q ss_pred CEEEEe-----ccccccChhHHhhcCCCEEEEcCCCCCCCCCCc----HHHHHHHhCCcEeEEEEEEecCC
Q 020508 206 DFLVLA-----RYMQILSGKFLRSYGKDVINIHHGLLPSFKGGK----PAKQAFDAGVKLIGATSHFVTEE 267 (325)
Q Consensus 206 Dliv~~-----g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~----pi~~ai~~G~~~~GvTvh~v~~~ 267 (325)
|+++++ ....++..+++...+.+.+-+.-| ||.- .+..++.+| +..|.-+.++..+
T Consensus 198 DvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~a-----rg~iv~~~aL~~al~~g-~i~ga~lDv~~~e 262 (529)
T 1ygy_A 198 DFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAA-----RGGLVDEAALADAITGG-HVRAAGLDVFATE 262 (529)
T ss_dssp SEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECS-----CTTSBCHHHHHHHHHTS-SEEEEEESSCSSS
T ss_pred CEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECC-----CCchhhHHHHHHHHHcC-CccEEEEeeccCC
Confidence 999998 345688887888887776666666 6642 345666665 4566666555443
No 204
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=38.87 E-value=53 Score=29.60 Aligned_cols=72 Identities=10% Similarity=-0.031 Sum_probs=0.0
Q ss_pred CCCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHh---
Q 020508 126 DPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELV--- 202 (325)
Q Consensus 126 ~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l--- 202 (325)
.+|+||++++.| |.--...+..++.. +.++++|+...+.. ...++.++.+-.+.+ -+++++.+
T Consensus 1 g~mirvgiIG~g-G~i~~~h~~~l~~~--~~~lvav~d~~~~~-----~~~~~~~~~~~~~~~------~~~ll~~~~~l 66 (312)
T 3o9z_A 1 GHMTRFALTGLA-GYIAPRHLKAIKEV--GGVLVASLDPATNV-----GLVDSFFPEAEFFTE------PEAFEAYLEDL 66 (312)
T ss_dssp --CCEEEEECTT-SSSHHHHHHHHHHT--TCEEEEEECSSCCC-----GGGGGTCTTCEEESC------HHHHHHHHHHH
T ss_pred CCceEEEEECCC-hHHHHHHHHHHHhC--CCEEEEEEcCCHHH-----HHHHhhCCCCceeCC------HHHHHHHhhhh
Q ss_pred --c--CCCEEEEe
Q 020508 203 --Q--NTDFLVLA 211 (325)
Q Consensus 203 --~--~~Dliv~~ 211 (325)
. ++|+++++
T Consensus 67 ~~~~~~vD~V~I~ 79 (312)
T 3o9z_A 67 RDRGEGVDYLSIA 79 (312)
T ss_dssp HHTTCCCSEEEEC
T ss_pred cccCCCCcEEEEC
No 205
>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A
Probab=38.52 E-value=22 Score=30.83 Aligned_cols=69 Identities=17% Similarity=0.343 Sum_probs=35.6
Q ss_pred CCceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCC
Q 020508 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (325)
Q Consensus 127 ~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 205 (325)
.++||+|++.|. |..+...+ ... +++| .+ .+++ .....++++++|+.+. . . ..+.++++
T Consensus 2 ~~m~i~iiG~G~mG~~~a~~l---~~~--g~~v-~~-~~~~---~~~~~~~~~~~g~~~~--~----~----~~~~~~~~ 61 (259)
T 2ahr_A 2 NAMKIGIIGVGKMASAIIKGL---KQT--PHEL-II-SGSS---LERSKEIAEQLALPYA--M----S----HQDLIDQV 61 (259)
T ss_dssp -CCEEEEECCSHHHHHHHHHH---TTS--SCEE-EE-ECSS---HHHHHHHHHHHTCCBC--S----S----HHHHHHTC
T ss_pred CccEEEEECCCHHHHHHHHHH---HhC--CCeE-EE-ECCC---HHHHHHHHHHcCCEee--C----C----HHHHHhcC
Confidence 357999998775 44443322 221 2443 33 3442 2334556666787642 1 1 11223478
Q ss_pred CEEEEecccc
Q 020508 206 DFLVLARYMQ 215 (325)
Q Consensus 206 Dliv~~g~~~ 215 (325)
|+++++--..
T Consensus 62 D~Vi~~v~~~ 71 (259)
T 2ahr_A 62 DLVILGIKPQ 71 (259)
T ss_dssp SEEEECSCGG
T ss_pred CEEEEEeCcH
Confidence 8888876443
No 206
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=37.19 E-value=25 Score=25.58 Aligned_cols=18 Identities=28% Similarity=0.407 Sum_probs=15.5
Q ss_pred chHHHHHHHCCCCEEEec
Q 020508 171 SHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 171 ~~~~~~a~~~gIp~~~~~ 188 (325)
..+..+|+++|||++.++
T Consensus 43 ~~i~~lc~~~~Ip~~~v~ 60 (82)
T 3v7e_A 43 SSVVSLAEDQGISVSMVE 60 (82)
T ss_dssp HHHHHHHHHHTCCEEEES
T ss_pred HHHHHHHHHcCCCEEEEC
Confidence 347888999999999887
No 207
>3rh0_A Arsenate reductase; oxidoreductase; 1.72A {Corynebacterium glutamicum}
Probab=36.59 E-value=1.2e+02 Score=24.42 Aligned_cols=84 Identities=15% Similarity=0.145 Sum_probs=44.3
Q ss_pred ecCCCCCceEEEEEeCCc--hHHHH-HHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHH
Q 020508 122 VPDIDPKYKVAVLASKQE--HCLVD-FLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEEL 198 (325)
Q Consensus 122 ~~~~~~~~ri~v~~Sg~g--~~l~~-Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~ 198 (325)
+|....++||.|+..|+- |.+.+ +++....+. .++.---+.+..+.+....+.++++||++.... ..... ++.
T Consensus 14 ~~~~~~~~~VLFVC~gN~cRSpmAEal~~~~~~~~--~~v~SAGt~~g~~~dp~a~~vl~e~Gidis~h~-ar~l~-~~~ 89 (148)
T 3rh0_A 14 VPRGSHMKSVLFVCVGNGGKSQMAAALAQKYASDS--VEIHSAGTKPAQGLNQLSVESIAEVGADMSQGI-PKAID-PEL 89 (148)
T ss_dssp ------CCEEEEEESSSSSHHHHHHHHHHHHCCTT--SEEEEEESSCCSSCCHHHHHHHHHTTCCCTTCC-CCBCC-HHH
T ss_pred ccCcCCCCEEEEECCCchhHHHHHHHHHHHhcCCC--EEEEecccCCCCCCCHHHHHHHHHcCCCcCCCe-eeECC-HHH
Confidence 345556789998888874 55544 665543333 333322233333345668889999999973211 11111 221
Q ss_pred HHHhcCCCEEEEec
Q 020508 199 LELVQNTDFLVLAR 212 (325)
Q Consensus 199 ~~~l~~~Dliv~~g 212 (325)
+..+|+|+...
T Consensus 90 ---~~~~DlIitM~ 100 (148)
T 3rh0_A 90 ---LRTVDRVVILG 100 (148)
T ss_dssp ---HHHCSEEEEES
T ss_pred ---hcCCCEEEEec
Confidence 22689999984
No 208
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}
Probab=35.84 E-value=72 Score=29.66 Aligned_cols=154 Identities=6% Similarity=0.015 Sum_probs=83.8
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCC
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 206 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 206 (325)
.++|+|++-|. |..+...+... +.+|.+ .++. .-.+.+.+.|+.+ .. ++.+.++++|
T Consensus 160 g~tvGIIGlG~IG~~vA~~l~~~-----G~~V~~--~d~~-----~~~~~~~~~g~~~--~~--------~l~ell~~aD 217 (352)
T 3gg9_A 160 GQTLGIFGYGKIGQLVAGYGRAF-----GMNVLV--WGRE-----NSKERARADGFAV--AE--------SKDALFEQSD 217 (352)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-----TCEEEE--ECSH-----HHHHHHHHTTCEE--CS--------SHHHHHHHCS
T ss_pred CCEEEEEeECHHHHHHHHHHHhC-----CCEEEE--ECCC-----CCHHHHHhcCceE--eC--------CHHHHHhhCC
Confidence 47899988775 66665555432 456543 2331 2235567778743 21 1334455789
Q ss_pred EEEEec-----cccccChhHHhhcCCCEEEEcCCCCCCCCC----CcHHHHHHHhCC-cEeEEEEEEecCCCCCCCeEEE
Q 020508 207 FLVLAR-----YMQILSGKFLRSYGKDVINIHHGLLPSFKG----GKPAKQAFDAGV-KLIGATSHFVTEELDAGPIIEQ 276 (325)
Q Consensus 207 liv~~g-----~~~il~~~~l~~~~~~~iNiHpslLP~yRG----~~pi~~ai~~G~-~~~GvTvh~v~~~~D~G~Ii~Q 276 (325)
+++++- -..++..+.++..+.+.+=+--| || -..+..|+.+|. .-.|.-++.-+.--..-|.+..
T Consensus 218 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a-----Rg~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~ 292 (352)
T 3gg9_A 218 VLSVHLRLNDETRSIITVADLTRMKPTALFVNTS-----RAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRM 292 (352)
T ss_dssp EEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECS-----CGGGBCTTHHHHHHHHTSSSEEEECCCSSSCCCSCCGGGGC
T ss_pred EEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECC-----CchhhcHHHHHHHHHhCCccEEEecccCCCCCCCCChhhcC
Confidence 998864 24578888998887664444444 45 356788888885 2234444433321112234433
Q ss_pred EEEeCCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHhCc
Q 020508 277 MVERVSHRD---NLRTFVQKSEDVEKQCLAKAIKSYCELR 313 (325)
Q Consensus 277 ~~~~I~~~d---t~~~l~~r~~~~~~~ll~~al~~i~~g~ 313 (325)
..+-+.|.- |.+. .+++ .+.+.+.+..+.+|+
T Consensus 293 ~nvilTPHia~~t~e~-~~~~----~~~~~~ni~~~~~G~ 327 (352)
T 3gg9_A 293 ENCICTPHIGYVERES-YEMY----FGIAFQNILDILQGN 327 (352)
T ss_dssp TTEEECCSCTTCBHHH-HHHH----HHHHHHHHHHHHTTC
T ss_pred CCEEECCCCCCCCHHH-HHHH----HHHHHHHHHHHHcCC
Confidence 344455542 3332 2232 344555666666774
No 209
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*
Probab=35.83 E-value=74 Score=30.14 Aligned_cols=49 Identities=20% Similarity=0.152 Sum_probs=26.5
Q ss_pred CCceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHH---HCCCC
Q 020508 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLE---RHGIP 183 (325)
Q Consensus 127 ~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~---~~gIp 183 (325)
+++||+|++.|. |.. .+..+... .+.++++|+...+ ....++++ ++|+|
T Consensus 19 ~~~rvgiIG~G~~g~~---h~~~l~~~-~~~~lvav~d~~~----~~~~~~a~~~~~~g~~ 71 (444)
T 2ixa_A 19 KKVRIAFIAVGLRGQT---HVENMARR-DDVEIVAFADPDP----YMVGRAQEILKKNGKK 71 (444)
T ss_dssp CCEEEEEECCSHHHHH---HHHHHHTC-TTEEEEEEECSCH----HHHHHHHHHHHHTTCC
T ss_pred CCceEEEEecCHHHHH---HHHHHHhC-CCcEEEEEEeCCH----HHHHHHHHHHHhcCCC
Confidence 468999998774 332 22222221 1478888775332 22344444 56864
No 210
>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}
Probab=35.42 E-value=43 Score=29.78 Aligned_cols=51 Identities=18% Similarity=0.238 Sum_probs=27.3
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEE
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYH 185 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~ 185 (325)
++||+|++.|. |+.+..-+.. .|....+|. +++++ ...+.++++++|+.+.
T Consensus 3 ~~~I~iIG~G~mG~aia~~l~~--~g~~~~~V~--v~dr~---~~~~~~l~~~~gi~~~ 54 (280)
T 3tri_A 3 TSNITFIGGGNMARNIVVGLIA--NGYDPNRIC--VTNRS---LDKLDFFKEKCGVHTT 54 (280)
T ss_dssp CSCEEEESCSHHHHHHHHHHHH--TTCCGGGEE--EECSS---SHHHHHHHHTTCCEEE
T ss_pred CCEEEEEcccHHHHHHHHHHHH--CCCCCCeEE--EEeCC---HHHHHHHHHHcCCEEe
Confidence 47999998876 5554433222 231112443 34443 2345666677787653
No 211
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=35.27 E-value=33 Score=31.24 Aligned_cols=36 Identities=14% Similarity=0.211 Sum_probs=20.7
Q ss_pred CCceEEEEE-eCCchHHHHHHHHhhcCCCCceEEEEEeCC
Q 020508 127 PKYKVAVLA-SKQEHCLVDFLYGWQEGKLPVEITCVISNH 165 (325)
Q Consensus 127 ~~~ri~v~~-Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~ 165 (325)
.++||+|.+ +|. --+.+++.+.+. .+.++++++..+
T Consensus 20 ~~irV~V~Ga~Gr--MGr~i~~~v~~~-~~~eLvg~vd~~ 56 (288)
T 3ijp_A 20 GSMRLTVVGANGR--MGRELITAIQRR-KDVELCAVLVRK 56 (288)
T ss_dssp -CEEEEESSTTSH--HHHHHHHHHHTC-SSEEEEEEBCCT
T ss_pred CCeEEEEECCCCH--HHHHHHHHHHhC-CCCEEEEEEecC
Confidence 468998865 443 333344443322 258999988754
No 212
>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6
Probab=35.03 E-value=78 Score=28.90 Aligned_cols=47 Identities=23% Similarity=0.267 Sum_probs=26.1
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCE
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPY 184 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~ 184 (325)
.+||+|++.|. |+.+...+.. . +++|. +.++. .....+.+.+.|+.+
T Consensus 16 ~~~I~IIG~G~mG~alA~~L~~--~---G~~V~--~~~~~---~~~~~~~a~~~G~~~ 63 (338)
T 1np3_A 16 GKKVAIIGYGSQGHAHACNLKD--S---GVDVT--VGLRS---GSATVAKAEAHGLKV 63 (338)
T ss_dssp TSCEEEECCSHHHHHHHHHHHH--T---TCCEE--EECCT---TCHHHHHHHHTTCEE
T ss_pred CCEEEEECchHHHHHHHHHHHH--C---cCEEE--EEECC---hHHHHHHHHHCCCEE
Confidence 36899998876 5555443332 2 24543 33432 123356677778754
No 213
>3t38_A Arsenate reductase; low molecular weight tyrosine phosphatase fold, reduction of to arsenite, oxidoreductase; 2.20A {Corynebacterium glutamicum}
Probab=34.99 E-value=1.6e+02 Score=25.27 Aligned_cols=81 Identities=12% Similarity=0.198 Sum_probs=46.4
Q ss_pred CCCceEEEEEeCCc--hHHHH-HHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEe-cCCCChhHHHHHHH
Q 020508 126 DPKYKVAVLASKQE--HCLVD-FLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYL-CAKENEREEELLEL 201 (325)
Q Consensus 126 ~~~~ri~v~~Sg~g--~~l~~-Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~-~~~~~~~~~~~~~~ 201 (325)
..++||.|+..|+- |.+.+ +++....+. .++.---+.+..+.+....+.++++||++... ++.. . ++.
T Consensus 79 ~~~~~VLFVCtgN~cRSpmAEal~~~~~~~~--~~v~SAGt~~g~~~dp~a~~vl~e~Gidis~~~sr~l--~-~~~--- 150 (213)
T 3t38_A 79 SPVPQVLFICVHNAGRSQIASALLSHYAGSS--VEVRSAGSLPASEIHPLVLEILSERGVNISDAFPKPL--T-DDV--- 150 (213)
T ss_dssp SCCCEEEEEESSSSSHHHHHHHHHHHHHGGG--CEEEEEESSCCSSCCHHHHHHHHHTTCCCTTCCCCBC--C-HHH---
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHHhccCc--eEEEecccCCCCCCCHHHHHHHHHcCCCcccCcCCcC--C-HHH---
Confidence 35789999998874 55544 555543332 23332223333334566889999999997311 1111 1 121
Q ss_pred hcCCCEEEEeccc
Q 020508 202 VQNTDFLVLARYM 214 (325)
Q Consensus 202 l~~~Dliv~~g~~ 214 (325)
+..+|+|+.....
T Consensus 151 ~~~~DlIitMd~~ 163 (213)
T 3t38_A 151 IRASDYVITMGCG 163 (213)
T ss_dssp HHHCSEEEESSCC
T ss_pred hccCCEEEEecCc
Confidence 2268999998654
No 214
>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}
Probab=34.69 E-value=56 Score=32.00 Aligned_cols=132 Identities=13% Similarity=0.161 Sum_probs=68.7
Q ss_pred CCceEEEEEeCC-chHHHHHHHHhhcCCCC-ceEEEEEeCCCCCCCchHHHHHHHCCCCEEEec-CCCChhHHHHH-HHh
Q 020508 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLP-VEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKENEREEELL-ELV 202 (325)
Q Consensus 127 ~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~-~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~-~~~~~~~~~~~-~~l 202 (325)
-++||++++.|. |+....++.+ .+.+. .+|+ |+ ++++. . .+.++..|+.+.... +. .+.++.+ ++|
T Consensus 12 ~~~rVlIIGaGgVG~~va~lla~--~~dv~~~~I~-va-D~~~~-~---~~~~~~~g~~~~~~~Vda--dnv~~~l~aLl 81 (480)
T 2ph5_A 12 FKNRFVILGFGCVGQALMPLIFE--KFDIKPSQVT-II-AAEGT-K---VDVAQQYGVSFKLQQITP--QNYLEVIGSTL 81 (480)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHH--HBCCCGGGEE-EE-ESSCC-S---CCHHHHHTCEEEECCCCT--TTHHHHTGGGC
T ss_pred CCCCEEEECcCHHHHHHHHHHHh--CCCCceeEEE-Ee-ccchh-h---hhHHhhcCCceeEEeccc--hhHHHHHHHHh
Confidence 367999988775 5655555543 23221 2443 23 44321 1 244556688776544 22 2223444 455
Q ss_pred cCCCEEEEeccccccChhHHhhc---CCCEEEEcCCC-CC---------CCCCCcHHHHHHHhCC-cEeEEEEEEecCCC
Q 020508 203 QNTDFLVLARYMQILSGKFLRSY---GKDVINIHHGL-LP---------SFKGGKPAKQAFDAGV-KLIGATSHFVTEEL 268 (325)
Q Consensus 203 ~~~Dliv~~g~~~il~~~~l~~~---~~~~iNiHpsl-LP---------~yRG~~pi~~ai~~G~-~~~GvTvh~v~~~~ 268 (325)
++.|++|.+++.+ ....+++.. +-..++.---+ .| ..|.-...+|++.+-. +..| .-.+..|+
T Consensus 82 ~~~DvVIN~s~~~-~~l~Im~acleaGv~YlDTa~E~~~p~~~~~~~~p~~~~~Y~~~~~~~~~~~~~~G--tAilg~G~ 158 (480)
T 2ph5_A 82 EENDFLIDVSIGI-SSLALIILCNQKGALYINAATEPWKEEFVMEKMALNRRTNYSLREEVLRLKDKTQK--TALITHGA 158 (480)
T ss_dssp CTTCEEEECCSSS-CHHHHHHHHHHHTCEEEESSCCCCCC----------CCCHHHHHHHHHTTTTTCCS--CEECSCBT
T ss_pred cCCCEEEECCccc-cCHHHHHHHHHcCCCEEECCCCcccccccccccCcchhhhHHHHHHHHHHHHhcCC--cEEecCCC
Confidence 6569999998764 334444433 22344443211 12 2222335778887654 3356 44577787
Q ss_pred CCC
Q 020508 269 DAG 271 (325)
Q Consensus 269 D~G 271 (325)
|-|
T Consensus 159 nPG 161 (480)
T 2ph5_A 159 NPG 161 (480)
T ss_dssp TTB
T ss_pred Ccc
Confidence 776
No 215
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=34.66 E-value=1.9e+02 Score=27.77 Aligned_cols=152 Identities=11% Similarity=0.099 Sum_probs=67.2
Q ss_pred chHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCC-hHHHHHHHH-hhhhhhcccceeeeecCCCCCceE
Q 020508 54 GIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWP-REQMDEDFF-KLSKMFNAMRSVVRVPDIDPKYKV 131 (325)
Q Consensus 54 GIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~-~~~L~~~l~-~l~~~l~~~~~~~~~~~~~~~~ri 131 (325)
..+.++-..|-+.++|+.-...++....... ..-.++. ..+ .+++.+.+. ++.+-++.... ..+...+ .++
T Consensus 30 ~~l~ei~~~Ll~adv~~~~~~~~~~~v~~~~---~~~~v~~-~~~~~~~v~~~l~~eL~~~L~~~~~--~~~~~~~-p~v 102 (443)
T 3dm5_A 30 ELVRDIQRALIQADVNVRLVLQLTREIQRRA---LEEKPPA-GISKKEHIIKIVYEELTKFLGTEAK--PIEIKEK-PTI 102 (443)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH---HHCCCCT-TCCHHHHHHHHHHHHHHHHTTSSCC--CCCCCSS-SEE
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHH---hhccccc-cCCcHHHHHHHHHHHHHHHhcCccc--ccccCCC-CeE
Confidence 4566777788888877664433321000000 0011222 222 233333332 23333443211 1222223 344
Q ss_pred EEEEeCC--c--hHHHHHHHHhhcCCCCceEEEEEeCCCCCCC-chHHHHHHHCCCCEEEecCCCChhH--HHHHHHhc-
Q 020508 132 AVLASKQ--E--HCLVDFLYGWQEGKLPVEITCVISNHDRGPN-SHVIRFLERHGIPYHYLCAKENERE--EELLELVQ- 203 (325)
Q Consensus 132 ~v~~Sg~--g--~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~-~~~~~~a~~~gIp~~~~~~~~~~~~--~~~~~~l~- 203 (325)
.+++... | +.+..|...++.. +.++..|-++..++.. ..+..+++..|+|++......+..+ .+.++.++
T Consensus 103 IlivG~~G~GKTTt~~kLA~~l~~~--G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~~ 180 (443)
T 3dm5_A 103 LLMVGIQGSGKTTTVAKLARYFQKR--GYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFKS 180 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHHh
Confidence 4444333 3 3445555555443 3566655555433211 2356788889999875432111100 12222333
Q ss_pred -CCCEEEEeccc
Q 020508 204 -NTDFLVLARYM 214 (325)
Q Consensus 204 -~~Dliv~~g~~ 214 (325)
++|++++=.-+
T Consensus 181 ~~~DvVIIDTaG 192 (443)
T 3dm5_A 181 KGVDIIIVDTAG 192 (443)
T ss_dssp TTCSEEEEECCC
T ss_pred CCCCEEEEECCC
Confidence 48988884333
No 216
>2fhm_A Probable acylphosphatase; hydrolase; NMR {Bacillus subtilis} PDB: 2hlt_A 2hlu_A 3br8_A
Probab=34.29 E-value=1.2e+02 Score=22.28 Aligned_cols=58 Identities=19% Similarity=0.118 Sum_probs=43.3
Q ss_pred HHHHHHHhhhhhhcccceeeeecCCCCCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEE
Q 020508 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVI 162 (325)
Q Consensus 101 ~L~~~l~~l~~~l~~~~~~~~~~~~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vv 162 (325)
-+|.-...+|.+||+.-|. +.-+ + =+|-+.+.|....+..+++.++.+..+++|..|-
T Consensus 16 GFR~~v~~~A~~lgl~G~V-~N~~-d--G~Vei~~eG~~~~i~~f~~~l~~~~p~a~V~~v~ 73 (91)
T 2fhm_A 16 GFRYFVQMEADKRKLAGWV-KNRD-D--GRVEILAEGPENALQSFVEAVKNGSPFSKVTDIS 73 (91)
T ss_dssp CHHHHHHHHHHHTTCEEEE-EECT-T--SCEEEEEEECHHHHHHHHHHHHTTCSSSEEEEEE
T ss_pred CHHHHHHHHHHHcCCeEEE-EECC-C--CcEEEEEEeCHHHHHHHHHHHHhCCCccEEEEEE
Confidence 3777788899999999874 4222 1 2677888888888999999988775557777663
No 217
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=34.22 E-value=2.7e+02 Score=25.32 Aligned_cols=100 Identities=7% Similarity=0.035 Sum_probs=54.4
Q ss_pred CCceEEEEEeCC-ch--HHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCC--C--h------
Q 020508 127 PKYKVAVLASKQ-EH--CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE--N--E------ 193 (325)
Q Consensus 127 ~~~ri~v~~Sg~-g~--~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~--~--~------ 193 (325)
+++||+++..+. || .+..|.+++++. +++|..+.+ .. ..+..++.|++++.++... . .
T Consensus 11 ~~~~Il~~~~~~~GHv~p~l~la~~L~~~--Gh~V~~~~~-~~------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 81 (424)
T 2iya_A 11 TPRHISFFNIPGHGHVNPSLGIVQELVAR--GHRVSYAIT-DE------FAAQVKAAGATPVVYDSILPKESNPEESWPE 81 (424)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHT--TCEEEEEEC-GG------GHHHHHHHTCEEEECCCCSCCTTCTTCCCCS
T ss_pred ccceEEEEeCCCCcccchHHHHHHHHHHC--CCeEEEEeC-HH------HHHHHHhCCCEEEecCccccccccchhhcch
Confidence 357999876543 44 445555555443 478765443 31 2456667798887665210 0 0
Q ss_pred h---------------HHHHHHHhc--CCCEEEEeccccccChhHHhhcCCCEEEEcCCC
Q 020508 194 R---------------EEELLELVQ--NTDFLVLARYMQILSGKFLRSYGKDVINIHHGL 236 (325)
Q Consensus 194 ~---------------~~~~~~~l~--~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpsl 236 (325)
. .+++.+.++ ++|++|+-.+.. ....+-+......+.++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~d~~~~-~~~~~A~~lgIP~v~~~~~~ 140 (424)
T 2iya_A 82 DQESAMGLFLDEAVRVLPQLEDAYADDRPDLIVYDIASW-PAPVLGRKWDIPFVQLSPTF 140 (424)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHTTTSCCSEEEEETTCT-HHHHHHHHHTCCEEEEESSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEcCccc-HHHHHHHhcCCCEEEEeccc
Confidence 0 023344444 699999876532 12233344555677766544
No 218
>1zzg_A Glucose-6-phosphate isomerase; structural genomics, riken structural genomics/PR initiative, RSGI, NPPSFA; 1.95A {Thermus thermophilus}
Probab=34.11 E-value=32 Score=32.98 Aligned_cols=72 Identities=15% Similarity=0.132 Sum_probs=42.9
Q ss_pred CChHHHHHHHHhhhhhhcccceeeeecCCCCCceEEEEEeCCchHHHHH------HHHhhc--C-CCCceEEEEEeCCCC
Q 020508 97 WPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDF------LYGWQE--G-KLPVEITCVISNHDR 167 (325)
Q Consensus 97 ~~~~~L~~~l~~l~~~l~~~~~~~~~~~~~~~~ri~v~~Sg~g~~l~~L------l~~~~~--~-~l~~~I~~Vvt~~~~ 167 (325)
.+.+.+.+.++.+ + ++.-+++++|++|+..+.+ .+.+.+ | .....+++|- .+.
T Consensus 101 ~dp~~~~~~l~~l------~----------~~~TlviviSKSGtT~ET~~~~~~ar~~l~~~~G~~~~~~~vavT-~~~- 162 (415)
T 1zzg_A 101 VEPEPILRLLRTL------D----------PRKTLVNAVSKSGSTAETLAGLAVFLKWLKAHLGEDWRRHLVVTT-DPK- 162 (415)
T ss_dssp CCHHHHHHHHHHS------C----------GGGEEEEEEESSSCCHHHHHHHHHHHHHHHHHHGGGGGGGEEEEE-CSS-
T ss_pred CCHHHHHHHHhhC------C----------CCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCccccCeEEEEe-CCC-
Confidence 5667777665543 1 1234788889998543322 222111 2 1124566544 442
Q ss_pred CCCchHHHHHHHCCCCEEEec
Q 020508 168 GPNSHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 168 ~~~~~~~~~a~~~gIp~~~~~ 188 (325)
++++.+.|++.||+++.++
T Consensus 163 --~s~L~~~a~~~Gi~~f~~~ 181 (415)
T 1zzg_A 163 --EGPLRAFAEREGLKAFAIP 181 (415)
T ss_dssp --SSHHHHHHHHHTCEEEECC
T ss_pred --CChHHHHHHHhCCcEEEec
Confidence 4789999999999988876
No 219
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=33.93 E-value=48 Score=32.62 Aligned_cols=35 Identities=14% Similarity=0.089 Sum_probs=30.4
Q ss_pred eEEEEEEc---CCCcchHHHHHHHHHhcCCeEeEeeee
Q 020508 42 HGIHVFHC---PDEVGIVAKLSECIASRGGNILAADVF 76 (325)
Q Consensus 42 ~~~ltv~g---~DrpGIVa~Vt~~La~~giNI~~l~~~ 76 (325)
-..+++.| +++||+.++|=+.|+++|+||.-+.+.
T Consensus 341 ~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I~ss 378 (510)
T 2cdq_A 341 VTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVATS 378 (510)
T ss_dssp EEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEEEE
T ss_pred eEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEEEEeC
Confidence 34678887 689999999999999999999988763
No 220
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=33.66 E-value=2.6e+02 Score=26.54 Aligned_cols=80 Identities=11% Similarity=0.100 Sum_probs=44.7
Q ss_pred CCCCceEEEEEeCCc-----hHHHHHHHH--hhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHH
Q 020508 125 IDPKYKVAVLASKQE-----HCLVDFLYG--WQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEE 197 (325)
Q Consensus 125 ~~~~~ri~v~~Sg~g-----~~l~~Ll~~--~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~ 197 (325)
+.+++||+++.+... ..+..++.. .... ++++..+...++ ...+..+..+..+ ++..+. . ....+
T Consensus 202 ~~~~~rI~~~~~~~~~~g~~~~~~~l~~~L~~~~~--~~~v~~~~~~~~--~~~~~~~~~~~~~-~~~~~~-~--~~~~~ 273 (568)
T 2vsy_A 202 SKGPLRVGFVSNGFGAHPTGLLTVALFEALQRRQP--DLQMHLFATSGD--DGSTLRTRLAQAS-TLHDVT-A--LGHLA 273 (568)
T ss_dssp SSSCEEEEEEESCSSSSHHHHHHHHHHHHHHHHCT--TEEEEEEESSCC--CSCHHHHHHHHTS-EEEECT-T--CCHHH
T ss_pred CCCCeEEEEECcccccChHHHHHHHHHhhccCCcc--cEEEEEEECCCC--CccHHHHHHHhcC-eEEECC-C--CCHHH
Confidence 356799999986532 334556665 3322 477765443322 1234445556666 554333 1 12345
Q ss_pred HHHHhc--CCCEEEEec
Q 020508 198 LLELVQ--NTDFLVLAR 212 (325)
Q Consensus 198 ~~~~l~--~~Dliv~~g 212 (325)
+.+.++ ++|+++...
T Consensus 274 l~~~i~~~~~Div~~~~ 290 (568)
T 2vsy_A 274 TAKHIRHHGIDLLFDLR 290 (568)
T ss_dssp HHHHHHHTTCSEEEECS
T ss_pred HHHHHHhCCCCEEEECC
Confidence 666776 799998753
No 221
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5
Probab=33.61 E-value=22 Score=32.07 Aligned_cols=49 Identities=10% Similarity=0.128 Sum_probs=28.0
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCE
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPY 184 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~ 184 (325)
++||+|++.|. |.. .++..+... .+.+++ | ++++ .....++++++|++.
T Consensus 2 ~~~igiIG~G~ig~~--~~~~~l~~~-~~~~l~-v-~d~~---~~~~~~~a~~~g~~~ 51 (323)
T 1xea_A 2 SLKIAMIGLGDIAQK--AYLPVLAQW-PDIELV-L-CTRN---PKVLGTLATRYRVSA 51 (323)
T ss_dssp CEEEEEECCCHHHHH--THHHHHTTS-TTEEEE-E-ECSC---HHHHHHHHHHTTCCC
T ss_pred CcEEEEECCCHHHHH--HHHHHHHhC-CCceEE-E-EeCC---HHHHHHHHHHcCCCc
Confidence 47999988775 321 122222221 146776 4 4443 234667889999884
No 222
>3r5t_A Ferric vibriobactin ABC transporter, periplasmic vibriobactin-binding protein; iron-vibriobactin transport protein; HET: VBN; 1.45A {Vibrio cholerae} PDB: 3r5s_A*
Probab=32.88 E-value=2.2e+02 Score=24.96 Aligned_cols=78 Identities=9% Similarity=0.087 Sum_probs=41.1
Q ss_pred eecCCCCCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHH
Q 020508 121 RVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLE 200 (325)
Q Consensus 121 ~~~~~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~ 200 (325)
.+|. ++.||+.+. .+....|+. |+..++++-.......-.+..+..+..++|..--.. ..+-+.+++
T Consensus 18 ~i~~--~p~RIV~l~---~~~~e~l~a------LG~~~Vg~~~~~~~~~~~~~~~~~~~~~~~~vG~~~--~~n~E~I~a 84 (305)
T 3r5t_A 18 TIPS--QPKRILSTA---VTVTGTLLA------IDAPVIASAATTQSTFFEQWRKLAELRQVKKLWPAG--SVDLESVYV 84 (305)
T ss_dssp EECS--CCSSEEESC---HHHHHHHHH------TTCCEEEEEECTTSCCCTTTHHHHHHTTCEEEEETT--CCCHHHHHH
T ss_pred EecC--CCeEEEEEC---cchhHHHHH------cCCceEEEeccccccccchhHhhHhhcCCCccCCCC--CCCHHHHHh
Confidence 4443 578988765 344444443 234788876543211111222333567888753211 222344444
Q ss_pred HhcCCCEEEEecc
Q 020508 201 LVQNTDFLVLARY 213 (325)
Q Consensus 201 ~l~~~Dliv~~g~ 213 (325)
+ +||||+...+
T Consensus 85 l--~PDLIi~~~~ 95 (305)
T 3r5t_A 85 E--QPDLIVVSMI 95 (305)
T ss_dssp H--CCSEEEEESS
T ss_pred c--CCCEEEEecc
Confidence 4 9999998765
No 223
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=32.79 E-value=2.9e+02 Score=25.32 Aligned_cols=105 Identities=11% Similarity=0.109 Sum_probs=55.4
Q ss_pred CCceEEEEEeCCc---hHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCC-CEEEecC--C-CChhH----
Q 020508 127 PKYKVAVLASKQE---HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGI-PYHYLCA--K-ENERE---- 195 (325)
Q Consensus 127 ~~~ri~v~~Sg~g---~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gI-p~~~~~~--~-~~~~~---- 195 (325)
+++||++++ |.- ..+..|++++++. .+.+...++|-... .-..+..+.+|| |-+.+.- . .+...
T Consensus 24 ~m~ki~~v~-Gtr~~~~~~a~li~~l~~~-~~~~~~~~~tG~h~---~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~ 98 (396)
T 3dzc_A 24 AMKKVLIVF-GTRPEAIKMAPLVQQLCQD-NRFVAKVCVTGQHR---EMLDQVLELFSITPDFDLNIMEPGQTLNGVTSK 98 (396)
T ss_dssp CCEEEEEEE-CSHHHHHHHHHHHHHHHHC-TTEEEEEEECCSSS---HHHHHHHHHTTCCCSEECCCCCTTCCHHHHHHH
T ss_pred CCCeEEEEE-eccHhHHHHHHHHHHHHhC-CCCcEEEEEecccH---HHHHHHHHhcCCCCceeeecCCCCCCHHHHHHH
Confidence 457887765 432 3456677776653 14676667775431 123455578998 4344431 1 11111
Q ss_pred --HHHHHHhc--CCCEEEEecccc-ccChhHHh-hcCCCEEEEcCCC
Q 020508 196 --EELLELVQ--NTDFLVLARYMQ-ILSGKFLR-SYGKDVINIHHGL 236 (325)
Q Consensus 196 --~~~~~~l~--~~Dliv~~g~~~-il~~~~l~-~~~~~~iNiHpsl 236 (325)
.++.+.++ +||++++.|... .++..+.. ..+..++.+|.++
T Consensus 99 ~~~~l~~~l~~~kPDvVi~~g~~~~~~~~~~aa~~~~IPv~h~~ag~ 145 (396)
T 3dzc_A 99 ILLGMQQVLSSEQPDVVLVHGDTATTFAASLAAYYQQIPVGHVEAGL 145 (396)
T ss_dssp HHHHHHHHHHHHCCSEEEEETTSHHHHHHHHHHHTTTCCEEEETCCC
T ss_pred HHHHHHHHHHhcCCCEEEEECCchhHHHHHHHHHHhCCCEEEEECCc
Confidence 23444444 899999987422 23322222 2344578777765
No 224
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=32.77 E-value=76 Score=30.29 Aligned_cols=56 Identities=13% Similarity=0.116 Sum_probs=36.7
Q ss_pred CceEEEEEeCCc-h-HHHHHHHHhhcCCCCceEEEEEeCCCCCCC-chHHHHHHHCCCC-EEEec
Q 020508 128 KYKVAVLASKQE-H-CLVDFLYGWQEGKLPVEITCVISNHDRGPN-SHVIRFLERHGIP-YHYLC 188 (325)
Q Consensus 128 ~~ri~v~~Sg~g-~-~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~-~~~~~~a~~~gIp-~~~~~ 188 (325)
+.||++..||.- | .+..++.. . +.+|.++..+.....+ ..+.+.|+++|+| ++.++
T Consensus 5 ~~kVvvalSGGlDSsvll~lL~e--~---G~eV~av~vd~g~~~e~e~a~~~A~~lGi~~~~vvd 64 (413)
T 2nz2_A 5 KGSVVLAYSGGLDTSCILVWLKE--Q---GYDVIAYLANIGQKEDFEEARKKALKLGAKKVFIED 64 (413)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHH--T---TEEEEEEEEESSCCCCHHHHHHHHHHHTCSEEEEEE
T ss_pred CCeEEEEEcChHHHHHHHHHHHH--c---CCEEEEEEEECCcHHHHHHHHHHHHHhCCCEEEEEe
Confidence 468999999852 3 43444432 2 4688888776643222 4578899999999 66553
No 225
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*
Probab=32.49 E-value=2.4e+02 Score=25.87 Aligned_cols=155 Identities=12% Similarity=0.146 Sum_probs=81.8
Q ss_pred CCceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCC
Q 020508 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (325)
Q Consensus 127 ~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 205 (325)
..++|+|++.|. |..+...+.. .+.+|.+ .++.. .. ..+.+.|+.. .. ++.+.++++
T Consensus 167 ~g~tvGIIG~G~IG~~vA~~l~~-----~G~~V~~--~d~~~--~~---~~~~~~g~~~--~~--------~l~ell~~a 224 (347)
T 1mx3_A 167 RGETLGIIGLGRVGQAVALRAKA-----FGFNVLF--YDPYL--SD---GVERALGLQR--VS--------TLQDLLFHS 224 (347)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHT-----TTCEEEE--ECTTS--CT---THHHHHTCEE--CS--------SHHHHHHHC
T ss_pred CCCEEEEEeECHHHHHHHHHHHH-----CCCEEEE--ECCCc--ch---hhHhhcCCee--cC--------CHHHHHhcC
Confidence 346899987765 5555544432 2456542 34421 11 2345566632 11 123344578
Q ss_pred CEEEEec-----cccccChhHHhhcCCCEEEEcCCCCCCCCCC----cHHHHHHHhCCcEeEEEEEEecCC--C-CCCCe
Q 020508 206 DFLVLAR-----YMQILSGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQAFDAGVKLIGATSHFVTEE--L-DAGPI 273 (325)
Q Consensus 206 Dliv~~g-----~~~il~~~~l~~~~~~~iNiHpslLP~yRG~----~pi~~ai~~G~~~~GvTvh~v~~~--~-D~G~I 273 (325)
|+++++- ...++.++.++..+.+.+=+.-| ||. ..+..|+.+|. ..|+-+-....+ . +..+.
T Consensus 225 DvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~a-----rg~~vd~~aL~~aL~~g~-i~gA~lDV~~~EP~~~~~~~L 298 (347)
T 1mx3_A 225 DCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTA-----RGGLVDEKALAQALKEGR-IRGAALDVHESEPFSFSQGPL 298 (347)
T ss_dssp SEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECS-----CTTSBCHHHHHHHHHHTS-EEEEEESCCSSSSCCTTSSTT
T ss_pred CEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEEECC-----CChHHhHHHHHHHHHhCC-CcEEEEeecccCCCCCCCchH
Confidence 9998863 34578888898888775555555 564 35677777773 445433333322 2 23454
Q ss_pred EEEEEEeCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHhCc
Q 020508 274 IEQMVERVSHRD--NLRTFVQKSEDVEKQCLAKAIKSYCELR 313 (325)
Q Consensus 274 i~Q~~~~I~~~d--t~~~l~~r~~~~~~~ll~~al~~i~~g~ 313 (325)
.....+-+.|.. ..++..+++.+ ...+.+..+.+|+
T Consensus 299 ~~~~nvi~tPHia~~t~~~~~~~~~----~~~~ni~~~~~g~ 336 (347)
T 1mx3_A 299 KDAPNLICTPHAAWYSEQASIEMRE----EAAREIRRAITGR 336 (347)
T ss_dssp TTCSSEEECSSCTTCCHHHHHHHHH----HHHHHHHHHHHSC
T ss_pred HhCCCEEEEchHHHHHHHHHHHHHH----HHHHHHHHHHcCC
Confidence 444444444442 22333344433 3445555666675
No 226
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=32.36 E-value=2e+02 Score=25.48 Aligned_cols=106 Identities=9% Similarity=0.098 Sum_probs=54.2
Q ss_pred CceEEEEEeCCc--hHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCE-EEecC-C--CChh------H
Q 020508 128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPY-HYLCA-K--ENER------E 195 (325)
Q Consensus 128 ~~ri~v~~Sg~g--~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~-~~~~~-~--~~~~------~ 195 (325)
++||++++...+ ..+..|++.+++. .++++..+++... .....+..+.+|+++ +.++- . .+.. -
T Consensus 5 mmkIl~v~~~~~~~~~~~~l~~~L~~~-~g~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (376)
T 1v4v_A 5 MKRVVLAFGTRPEATKMAPVYLALRGI-PGLKPLVLLTGQH---REQLRQALSLFGIQEDRNLDVMQERQALPDLAARIL 80 (376)
T ss_dssp CEEEEEEECSHHHHHHHHHHHHHHHTS-TTEEEEEEECSSC---HHHHHHHHHTTTCCCSEECCCCSSCCCHHHHHHHHH
T ss_pred ceEEEEEEeccHHHHHHHHHHHHHHhC-CCCceEEEEcCCc---HHHHHHHHHHcCCCcccccccCCCCccHHHHHHHHH
Confidence 479988774432 2345566666542 1367666665431 122344556688875 33331 1 1110 1
Q ss_pred HHHHHHhc--CCCEEEEeccc-cccChhHHh-hcCCCEEEEcCCCC
Q 020508 196 EELLELVQ--NTDFLVLARYM-QILSGKFLR-SYGKDVINIHHGLL 237 (325)
Q Consensus 196 ~~~~~~l~--~~Dliv~~g~~-~il~~~~l~-~~~~~~iNiHpslL 237 (325)
..+.+.++ +||++++.++. ..++..+.. ..+..++.+|.++.
T Consensus 81 ~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~a~~~~ip~v~~~~~~~ 126 (376)
T 1v4v_A 81 PQAARALKEMGADYVLVHGDTLTTFAVAWAAFLEGIPVGHVEAGLR 126 (376)
T ss_dssp HHHHHHHHHTTCSEEEEESSCHHHHHHHHHHHHTTCCEEEETCCCC
T ss_pred HHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHhCCCEEEEeCCCc
Confidence 13444554 89999997542 222222222 23456788887763
No 227
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A
Probab=32.35 E-value=2.1e+02 Score=25.99 Aligned_cols=155 Identities=15% Similarity=0.211 Sum_probs=86.0
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCC
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 206 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 206 (325)
.++|+|++-|. |..+...+.. .+.+|.+. ....+ .. .++... .. ..++.+.++++|
T Consensus 139 g~tvGIiG~G~IG~~vA~~l~~-----~G~~V~~~-dr~~~--~~--------~~~~~~-~~------~~~l~ell~~aD 195 (315)
T 3pp8_A 139 EFSVGIMGAGVLGAKVAESLQA-----WGFPLRCW-SRSRK--SW--------PGVESY-VG------REELRAFLNQTR 195 (315)
T ss_dssp TCCEEEECCSHHHHHHHHHHHT-----TTCCEEEE-ESSCC--CC--------TTCEEE-ES------HHHHHHHHHTCS
T ss_pred CCEEEEEeeCHHHHHHHHHHHH-----CCCEEEEE-cCCch--hh--------hhhhhh-cc------cCCHHHHHhhCC
Confidence 47899988776 6666655543 24666543 22221 00 122221 11 134556667899
Q ss_pred EEEEec-----cccccChhHHhhcCCCEEEEcCCCCCCCCCC----cHHHHHHHhCCcEeEEEEEEecCC-CCC-CCeEE
Q 020508 207 FLVLAR-----YMQILSGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQAFDAGVKLIGATSHFVTEE-LDA-GPIIE 275 (325)
Q Consensus 207 liv~~g-----~~~il~~~~l~~~~~~~iNiHpslLP~yRG~----~pi~~ai~~G~~~~GvTvh~v~~~-~D~-G~Ii~ 275 (325)
++++.- -..+|..+.++..+.+.+=+.-| ||. ..+..|+.+|. ..|.-+=..+.+ +.. -|.+.
T Consensus 196 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a-----RG~~vd~~aL~~aL~~g~-i~gA~lDV~~~EPl~~~~pL~~ 269 (315)
T 3pp8_A 196 VLINLLPNTAQTVGIINSELLDQLPDGAYVLNLA-----RGVHVQEADLLAALDSGK-LKGAMLDVFSQEPLPQESPLWR 269 (315)
T ss_dssp EEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECS-----CGGGBCHHHHHHHHHHTS-EEEEEESCCSSSSCCTTCGGGG
T ss_pred EEEEecCCchhhhhhccHHHHhhCCCCCEEEECC-----CChhhhHHHHHHHHHhCC-ccEEEcCCCCCCCCCCCChhhc
Confidence 999874 34588899999888775555544 564 45677788874 555444433333 222 24443
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCcee
Q 020508 276 QMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVL 315 (325)
Q Consensus 276 Q~~~~I~~~dt~~~l~~r~~~~~~~ll~~al~~i~~g~~~ 315 (325)
...+-+.|.-...+..++ ..+.+.+.+..+.+|+-.
T Consensus 270 ~~nvilTPHia~~t~~~~----~~~~~~~ni~~~~~G~~~ 305 (315)
T 3pp8_A 270 HPRVAMTPHIAAVTRPAE----AIDYISRTITQLEKGEPV 305 (315)
T ss_dssp CTTEEECSSCSSCCCHHH----HHHHHHHHHHHHHHTCCC
T ss_pred CCCEEECCCCCcccHHHH----HHHHHHHHHHHHHcCCCC
Confidence 344445554322222222 345667777888887644
No 228
>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1
Probab=32.03 E-value=1.3e+02 Score=27.42 Aligned_cols=51 Identities=18% Similarity=0.094 Sum_probs=30.7
Q ss_pred CceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEE
Q 020508 128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYH 185 (325)
Q Consensus 128 ~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~ 185 (325)
++||++.+.|. --+.++..+... ...++++|.... ......+++.+|++++
T Consensus 2 ~irVgIiG~G~--iG~~~~r~l~~~-~~~elvav~d~~----~~~~~~~~~~~g~~~~ 52 (334)
T 2czc_A 2 KVKVGVNGYGT--IGKRVAYAVTKQ-DDMELIGITKTK----PDFEAYRAKELGIPVY 52 (334)
T ss_dssp CEEEEEECCSH--HHHHHHHHHHTC-TTEEEEEEEESS----CSHHHHHHHHTTCCEE
T ss_pred CcEEEEEeEhH--HHHHHHHHHhcC-CCCEEEEEEcCC----HHHHHHHHHhcCcccc
Confidence 47999988754 222333333221 247888877542 2355678888888865
No 229
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=31.84 E-value=70 Score=25.09 Aligned_cols=72 Identities=7% Similarity=-0.005 Sum_probs=35.7
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHH--HCCCCEEEecCCCChhHHHHHHH--h
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLE--RHGIPYHYLCAKENEREEELLEL--V 202 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~--~~gIp~~~~~~~~~~~~~~~~~~--l 202 (325)
+.+|+|++.|. |..+...|.. . +++++.+-.+++ .....+.+ ..|+++...+ ..+++.++. +
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~--~---g~~V~vid~~~~----~~~~~~~~~~~~~~~~i~gd----~~~~~~l~~a~i 69 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQ--R---GQNVTVISNLPE----DDIKQLEQRLGDNADVIPGD----SNDSSVLKKAGI 69 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHH--T---TCCEEEEECCCH----HHHHHHHHHHCTTCEEEESC----TTSHHHHHHHTT
T ss_pred CCcEEEECCCHHHHHHHHHHHH--C---CCCEEEEECCCh----HHHHHHHHhhcCCCeEEEcC----CCCHHHHHHcCh
Confidence 45888887653 4444333322 2 356654433221 11222332 4578877543 122334443 3
Q ss_pred cCCCEEEEec
Q 020508 203 QNTDFLVLAR 212 (325)
Q Consensus 203 ~~~Dliv~~g 212 (325)
.++|+++++.
T Consensus 70 ~~ad~vi~~~ 79 (153)
T 1id1_A 70 DRCRAILALS 79 (153)
T ss_dssp TTCSEEEECS
T ss_pred hhCCEEEEec
Confidence 4899888874
No 230
>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3
Probab=31.83 E-value=68 Score=31.33 Aligned_cols=99 Identities=12% Similarity=0.083 Sum_probs=59.3
Q ss_pred CCceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCC
Q 020508 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (325)
Q Consensus 127 ~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 205 (325)
..++|+|++.|. |..+...+..+ +.+|. +.+++ ..-...+...|+.+. ++.+.++++
T Consensus 256 ~GktVgIIG~G~IG~~vA~~l~~~-----G~~Vi--v~d~~----~~~~~~a~~~g~~~~-----------~l~ell~~a 313 (479)
T 1v8b_A 256 SGKIVVICGYGDVGKGCASSMKGL-----GARVY--ITEID----PICAIQAVMEGFNVV-----------TLDEIVDKG 313 (479)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHH-----TCEEE--EECSC----HHHHHHHHTTTCEEC-----------CHHHHTTTC
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhC-----cCEEE--EEeCC----hhhHHHHHHcCCEec-----------CHHHHHhcC
Confidence 357899988765 55554444432 35543 34442 111123556666331 134556689
Q ss_pred CEEEEe-ccccccChhHHhhcCCCEEEEcCCCCCCCCCCc-HHHHHHHh
Q 020508 206 DFLVLA-RYMQILSGKFLRSYGKDVINIHHGLLPSFKGGK-PAKQAFDA 252 (325)
Q Consensus 206 Dliv~~-g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~-pi~~ai~~ 252 (325)
|+++++ +-..+|..+.++..+.+.+=++.| ||.. --..++.+
T Consensus 314 DiVi~~~~t~~lI~~~~l~~MK~gailiNvg-----rg~~EId~~aL~~ 357 (479)
T 1v8b_A 314 DFFITCTGNVDVIKLEHLLKMKNNAVVGNIG-----HFDDEIQVNELFN 357 (479)
T ss_dssp SEEEECCSSSSSBCHHHHTTCCTTCEEEECS-----STTTSBCHHHHHT
T ss_pred CEEEECCChhhhcCHHHHhhcCCCcEEEEeC-----CCCccccchhhhc
Confidence 999998 567789999999988887667666 4544 23445554
No 231
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=31.53 E-value=57 Score=32.17 Aligned_cols=173 Identities=12% Similarity=0.060 Sum_probs=92.5
Q ss_pred eEEEEEEcC-CC-cchHHHHHHHHHhcCCeEeEee--------------------eecc----CCCCeEEEEE-------
Q 020508 42 HGIHVFHCP-DE-VGIVAKLSECIASRGGNILAAD--------------------VFVP----EKKNVFYSRS------- 88 (325)
Q Consensus 42 ~~~ltv~g~-Dr-pGIVa~Vt~~La~~giNI~~l~--------------------~~~~----~~~g~F~~~~------- 88 (325)
+..+.+.|. +- +|=+.++.+.|.+.|+.+.-+- ++.+ .....+.+.+
T Consensus 221 ~~~VNIig~~~~~~gD~~elkrlL~~~Gi~v~~lpd~s~~ld~p~~~~~~~~~ggtt~~ei~~~~~A~~niv~~~~~~~~ 300 (523)
T 3u7q_B 221 NKKINIVPGFETYLGNFRVIKRMLSEMGVGYSLLSDPEEVLDTPADGQFRMYAGGTTQEEMKDAPNALNTVLLQPWHLEK 300 (523)
T ss_dssp TCCEEEECCSCCCHHHHHHHHHHHHHTTCCEEESSCCTTTTSCCCSSCCCSCCCCBCHHHHHHGGGSSEEEESSGGGCHH
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHcCCeEEEecCchhcccccccccccccCCCCCHHHHHHhhcCcEEEEEccchHHH
Confidence 445666764 33 8999999999999999987531 0110 0011333221
Q ss_pred -------EEEeCC----CCCChHHHHHHHHhhhhhhccccee-e-----eec-------CCCCCceEEEEEeCCchHHHH
Q 020508 89 -------EFIFDP----IKWPREQMDEDFFKLSKMFNAMRSV-V-----RVP-------DIDPKYKVAVLASKQEHCLVD 144 (325)
Q Consensus 89 -------~v~~p~----~~~~~~~L~~~l~~l~~~l~~~~~~-~-----~~~-------~~~~~~ri~v~~Sg~g~~l~~ 144 (325)
...+|- .+...+.-.+-|.++++-+|.+... + |.. ..-..+|+++++ .+.-...
T Consensus 301 ~A~~Le~~~GiP~i~~~~PiG~~~T~~~l~~la~~~g~~~~~~i~~er~r~~~~l~d~~~~l~GKrvaI~g--d~~~~~~ 378 (523)
T 3u7q_B 301 TKKFVEGTWKHEVPKLNIPMGLDWTDEFLMKVSEISGQPIPASLTKERGRLVDMMTDSHTWLHGKRFALWG--DPDFVMG 378 (523)
T ss_dssp HHHHHHHTSCCCCCCCCCSCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHTTCEEEEEC--SHHHHHH
T ss_pred HHHHHHHHhCCCeeecCCcCCHHHHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHhcCCCEEEEEC--CchHHHH
Confidence 012221 1345677777777888777654110 0 000 001237898874 3333333
Q ss_pred HHHHhhcCCCCceEEEEEeCCCCCC-CchHHHHHHH--CCCCEEEecCCCChhHHHHHHHhc--CCCEEEEeccccccCh
Q 020508 145 FLYGWQEGKLPVEITCVISNHDRGP-NSHVIRFLER--HGIPYHYLCAKENEREEELLELVQ--NTDFLVLARYMQILSG 219 (325)
Q Consensus 145 Ll~~~~~~~l~~~I~~Vvt~~~~~~-~~~~~~~a~~--~gIp~~~~~~~~~~~~~~~~~~l~--~~Dliv~~g~~~il~~ 219 (325)
|...+. +++.+++.+++...... ...+.+..++ +|.....+.. ....++.+.++ +|||++.-++.+.+-.
T Consensus 379 la~fL~--elGm~vv~v~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~---~D~~~l~~~i~~~~pDLlig~s~~k~~a~ 453 (523)
T 3u7q_B 379 LVKFLL--ELGCEPVHILCHNGNKRWKKAVDAILAASPYGKNATVYIG---KDLWHLRSLVFTDKPDFMIGNSYGKFIQR 453 (523)
T ss_dssp HHHHHH--HTTCEEEEEEETTCCHHHHHHHHHHHHTSGGGTTCEEEES---CCHHHHHHHHHHTCCSEEEECTTHHHHHH
T ss_pred HHHHHH--HcCCEEEEEEeCCCCHHHHHHHHHHHhhccCCCCcEEEEC---CCHHHHHHHHHhcCCCEEEECccHHHHHH
Confidence 444333 36789999988653210 0123344443 2322222221 12346677775 8999999999876665
Q ss_pred hH
Q 020508 220 KF 221 (325)
Q Consensus 220 ~~ 221 (325)
+.
T Consensus 454 ~~ 455 (523)
T 3u7q_B 454 DT 455 (523)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 232
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=31.50 E-value=1.8e+02 Score=25.31 Aligned_cols=73 Identities=12% Similarity=0.105 Sum_probs=37.6
Q ss_pred ceEEEEE-eCC-chHH-HHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCC
Q 020508 129 YKVAVLA-SKQ-EHCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (325)
Q Consensus 129 ~ri~v~~-Sg~-g~~l-~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 205 (325)
+||+|.+ +|. |..+ +.|++. +++|.++. .+.. ......+.....|+.+...+ . ...+++.+.++++
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~------g~~V~~l~-R~~~-~~~~~~~~l~~~~v~~v~~D--l-~d~~~l~~a~~~~ 80 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKL------GHPTYVFT-RPNS-SKTTLLDEFQSLGAIIVKGE--L-DEHEKLVELMKKV 80 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHT------TCCEEEEE-CTTC-SCHHHHHHHHHTTCEEEECC--T-TCHHHHHHHHTTC
T ss_pred CeEEEECCCchHHHHHHHHHHHC------CCcEEEEE-CCCC-chhhHHHHhhcCCCEEEEec--C-CCHHHHHHHHcCC
Confidence 4777766 232 4443 444432 35665543 3321 11222222245688876554 1 1234566777789
Q ss_pred CEEEEec
Q 020508 206 DFLVLAR 212 (325)
Q Consensus 206 Dliv~~g 212 (325)
|.++.+.
T Consensus 81 d~vi~~a 87 (318)
T 2r6j_A 81 DVVISAL 87 (318)
T ss_dssp SEEEECC
T ss_pred CEEEECC
Confidence 9888764
No 233
>1u2p_A Ptpase, low molecular weight protein-tyrosine- phosphatase; hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 1u2q_A
Probab=31.40 E-value=77 Score=25.81 Aligned_cols=81 Identities=16% Similarity=0.190 Sum_probs=45.2
Q ss_pred CCceEEEEEeCCc--hHHHH-HHHHh-hcCCCC--ceEEEEEeCC---CCCCCchHHHHHHHCCCCEEEec-CCCChhHH
Q 020508 127 PKYKVAVLASKQE--HCLVD-FLYGW-QEGKLP--VEITCVISNH---DRGPNSHVIRFLERHGIPYHYLC-AKENEREE 196 (325)
Q Consensus 127 ~~~ri~v~~Sg~g--~~l~~-Ll~~~-~~~~l~--~~I~~Vvt~~---~~~~~~~~~~~a~~~gIp~~~~~-~~~~~~~~ 196 (325)
+++||.|+.+|+- |.+.+ ++... +...++ .+|.---+.. ..+.+....+.++++||++. .. +... +
T Consensus 3 ~~~~VLFVC~gN~cRSpmAEal~~~~~~~~gl~~~~~v~SAGt~~~~~G~~~~p~a~~~l~~~Gid~s-~~ar~l~---~ 78 (163)
T 1u2p_A 3 DPLHVTFVCTGNICRSPMAEKMFAQQLRHRGLGDAVRVTSAGTGNWHVGSCADERAAGVLRAHGYPTD-HRAAQVG---T 78 (163)
T ss_dssp -CEEEEEEESSSSSHHHHHHHHHHHHHHHTTCTTTEEEEEEESSCTTTTCCCCHHHHHHHHHTTCCCC-CCCCBCC---H
T ss_pred CCCEEEEEcCCcHhHHHHHHHHHHHHHHHCCCCCcEEEEecccCCCcCCCCCCHHHHHHHHHcCcCCC-ceeeECC---h
Confidence 4689999999874 55533 55543 222222 3333222222 22335668899999999986 32 2221 1
Q ss_pred HHHHHhcCCCEEEEecccc
Q 020508 197 ELLELVQNTDFLVLARYMQ 215 (325)
Q Consensus 197 ~~~~~l~~~Dliv~~g~~~ 215 (325)
..+.. |+|+...-..
T Consensus 79 ---~~~~~-DlIi~Md~~~ 93 (163)
T 1u2p_A 79 ---EHLAA-DLLVALDRNH 93 (163)
T ss_dssp ---HHHTS-SEEEESSHHH
T ss_pred ---hhccC-CEEEEeCHHH
Confidence 12348 9999986543
No 234
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}
Probab=31.37 E-value=1.2e+02 Score=27.96 Aligned_cols=156 Identities=14% Similarity=0.119 Sum_probs=81.1
Q ss_pred CCceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCC
Q 020508 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (325)
Q Consensus 127 ~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 205 (325)
..++|+|++-|. |..+...+.. .+.+|.+ .++.. . .+.+.+.|+.+ .+ +.+.++++
T Consensus 164 ~g~tvgIIGlG~IG~~vA~~l~~-----~G~~V~~--~d~~~---~--~~~~~~~g~~~--~~---------l~ell~~a 220 (335)
T 2g76_A 164 NGKTLGILGLGRIGREVATRMQS-----FGMKTIG--YDPII---S--PEVSASFGVQQ--LP---------LEEIWPLC 220 (335)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHT-----TTCEEEE--ECSSS---C--HHHHHHTTCEE--CC---------HHHHGGGC
T ss_pred CcCEEEEEeECHHHHHHHHHHHH-----CCCEEEE--ECCCc---c--hhhhhhcCcee--CC---------HHHHHhcC
Confidence 346899987765 5555544432 2466542 33321 1 23567778742 11 33455689
Q ss_pred CEEEEec-----cccccChhHHhhcCCCEEEEcCCCCCCCCCC----cHHHHHHHhCCcEeEEEEEEecCCC-CCCCeEE
Q 020508 206 DFLVLAR-----YMQILSGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQAFDAGVKLIGATSHFVTEEL-DAGPIIE 275 (325)
Q Consensus 206 Dliv~~g-----~~~il~~~~l~~~~~~~iNiHpslLP~yRG~----~pi~~ai~~G~~~~GvTvh~v~~~~-D~G~Ii~ 275 (325)
|+++++- ...++.++.++..+.+.+=+--| ||. ..+..|+.+| ...|.-+-....+- ..-|.+.
T Consensus 221 DvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~a-----rg~vvd~~aL~~aL~~g-~i~gA~lDV~~~EP~~~~~L~~ 294 (335)
T 2g76_A 221 DFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCA-----RGGIVDEGALLRALQSG-QCAGAALDVFTEEPPRDRALVD 294 (335)
T ss_dssp SEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECS-----CTTSBCHHHHHHHHHHT-SEEEEEESCCSSSSCSCCHHHH
T ss_pred CEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECC-----CccccCHHHHHHHHHhC-CccEEEEeecCCCCCCCchHHh
Confidence 9999873 34578888888887665444334 453 3567788887 45555554444442 2233443
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCc
Q 020508 276 QMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELR 313 (325)
Q Consensus 276 Q~~~~I~~~dt~~~l~~r~~~~~~~ll~~al~~i~~g~ 313 (325)
...+-+.|.....+... .....+.+.+.+..+.+|+
T Consensus 295 ~~nvilTPH~~~~t~e~--~~~~~~~~~~nl~~~~~g~ 330 (335)
T 2g76_A 295 HENVISCPHLGASTKEA--QSRCGEEIAVQFVDMVKGK 330 (335)
T ss_dssp STTEEECSSCTTCBHHH--HHHHHHHHHHHHHHHC---
T ss_pred CCCEEECCcCCCCCHHH--HHHHHHHHHHHHHHHHcCC
Confidence 33444555432222111 1222334455555555554
No 235
>3aek_A Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_A* 3aes_A* 3aer_A* 3aet_A 3aeu_A
Probab=31.34 E-value=2.1e+02 Score=27.16 Aligned_cols=195 Identities=10% Similarity=-0.006 Sum_probs=100.2
Q ss_pred eEEEEEEcCCCcchH-HHHHHHHHhcCCeEeEeeee--cc---C-CCCeEEEEE-----------------EEEeCCCCC
Q 020508 42 HGIHVFHCPDEVGIV-AKLSECIASRGGNILAADVF--VP---E-KKNVFYSRS-----------------EFIFDPIKW 97 (325)
Q Consensus 42 ~~~ltv~g~DrpGIV-a~Vt~~La~~giNI~~l~~~--~~---~-~~g~F~~~~-----------------~v~~p~~~~ 97 (325)
+..+.+.|. -+|-. .++.+.|.+.|+.+..+-.. .+ . ....+.+.+ .+..|. +.
T Consensus 183 ~~~VNilG~-~~~~~~~eik~lL~~~Gi~v~~~~~~~~~~ei~~~~~A~~niv~~~~~~~~A~~Le~~GiP~i~~~~-P~ 260 (437)
T 3aek_A 183 AAELIVVGA-LPDVVEDQCLSLLTQLGVGPVRMLPARRSDIEPAVGPNTRFILAQPFLGETTGALERRGAKRIAAPF-PF 260 (437)
T ss_dssp CCCEEEESC-CCHHHHHHHHHHHHHTTCCCEEEESCSSGGGCCCBCTTCEEEESSTTCHHHHHHHHHTTCEECCCCC-SC
T ss_pred CCcEEEEeC-CChhHHHHHHHHHHHcCCceEEEcCCCCHHHHHhhhcCcEEEEECccHHHHHHHHHHcCCCeEecCC-Cc
Confidence 456788886 56666 89999999999998754331 11 1 111333221 112222 45
Q ss_pred ChHHHHHHHHhhhhhhcccce-e---ee---------ecC---CCCCceEEEEEeCC-chHHHHHHHHhhcCCCCceEEE
Q 020508 98 PREQMDEDFFKLSKMFNAMRS-V---VR---------VPD---IDPKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITC 160 (325)
Q Consensus 98 ~~~~L~~~l~~l~~~l~~~~~-~---~~---------~~~---~~~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~ 160 (325)
..+.-.+-|.++++-+|.+.. . +. +.+ .-..+|+++++.+. ...+..+|. .+++.+++.
T Consensus 261 G~~~T~~~l~~la~~~g~~~~~~e~~i~~e~~~~~~~l~~~~~~l~Gkrv~i~g~~~~~~~l~~~L~----~elG~~vv~ 336 (437)
T 3aek_A 261 GEEGTTLWLKAVADAYGVSAEKFEAVTAAPRARAKKAIAAHLETLTGKSLFMFPDSQLEIPLARFLA----RECGMKTTE 336 (437)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTHHHHTTCEEEECSSSSCHHHHHHHHH----HTTCCEEEE
T ss_pred CHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCchHHHHHHHHHH----HHcCCEEEE
Confidence 567788888888887776532 0 00 000 00236888876432 233344431 145789999
Q ss_pred EEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhc--CCCEEEEeccccccChhHHhhcCCCEE-EE--cCC
Q 020508 161 VISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVLARYMQILSGKFLRSYGKDVI-NI--HHG 235 (325)
Q Consensus 161 Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~--~~Dliv~~g~~~il~~~~l~~~~~~~i-Ni--Hps 235 (325)
+.+...+ .....+..+..+-...... +....++.++++ +||+++.-++.+- .+.+....+. .+ +..
T Consensus 337 ~~~~~~~--~~~~~~~l~~l~~~~~v~~---~~d~~e~~~~i~~~~pDliig~~~~~~----p~~~~G~P~~d~~~~~~~ 407 (437)
T 3aek_A 337 IATPFLH--KAIMAPDLALLPSNTALTE---GQDLEAQLDRHEAINPDLTVCGLGLAN----PLEAKGHATKWAIELVFT 407 (437)
T ss_dssp EEESCCC--HHHHHHHHTTSBTTCEEEE---ECCHHHHHHHHHHHCCSEEEECHHHHH----HHHTTTCCEEEGGGGTSS
T ss_pred EEecCCC--HHHHHHHHHhcCCCCEEEe---CCCHHHHHHHHhccCCCEEEeCCcccc----HHHHCCCCEEeecCCCcC
Confidence 8885421 1111222333322222222 112345667776 8999997765421 2233333343 22 233
Q ss_pred CCCCCCCCcHHHHHHH
Q 020508 236 LLPSFKGGKPAKQAFD 251 (325)
Q Consensus 236 lLP~yRG~~pi~~ai~ 251 (325)
..=-|+|..-+...|.
T Consensus 408 p~~Gy~G~~~l~~~i~ 423 (437)
T 3aek_A 408 PVHFYEQAGDLAGLFS 423 (437)
T ss_dssp CCSSSTTHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHH
Confidence 3334788766554443
No 236
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=31.08 E-value=1.9e+02 Score=22.87 Aligned_cols=79 Identities=16% Similarity=0.084 Sum_probs=40.4
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHH--HCCCC--EEEecCCCChhHHHHHHHh
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLE--RHGIP--YHYLCAKENEREEELLELV 202 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~--~~gIp--~~~~~~~~~~~~~~~~~~l 202 (325)
+..+++++.-. .-++..++++++.- .+.+++.+ ...+ ....+.++++ ++|++ +...+. ...+++.+.+
T Consensus 23 ~~~i~~~G~~~~~Kg~~~li~a~~~l-~~~~l~i~-G~~~--~~~~l~~~~~~~~~~l~~~v~~~g~---~~~~e~~~~~ 95 (177)
T 2f9f_A 23 GDFWLSVNRIYPEKRIELQLEVFKKL-QDEKLYIV-GWFS--KGDHAERYARKIMKIAPDNVKFLGS---VSEEELIDLY 95 (177)
T ss_dssp CSCEEEECCSSGGGTHHHHHHHHHHC-TTSCEEEE-BCCC--TTSTHHHHHHHHHHHSCTTEEEEES---CCHHHHHHHH
T ss_pred CCEEEEEeccccccCHHHHHHHHHhC-CCcEEEEE-ecCc--cHHHHHHHHHhhhcccCCcEEEeCC---CCHHHHHHHH
Confidence 34454444322 23566667665432 13444333 2222 1246777777 65553 443331 2335677777
Q ss_pred cCCCEEEEecc
Q 020508 203 QNTDFLVLARY 213 (325)
Q Consensus 203 ~~~Dliv~~g~ 213 (325)
+.+|++++...
T Consensus 96 ~~adi~v~ps~ 106 (177)
T 2f9f_A 96 SRCKGLLCTAK 106 (177)
T ss_dssp HHCSEEEECCS
T ss_pred HhCCEEEeCCC
Confidence 78888886443
No 237
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=30.98 E-value=1.9e+02 Score=26.79 Aligned_cols=110 Identities=15% Similarity=0.219 Sum_probs=58.4
Q ss_pred CceEEEEEeCCc--hHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHH-HHHHCCCC--EEEecCC-CChhH------
Q 020508 128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIR-FLERHGIP--YHYLCAK-ENERE------ 195 (325)
Q Consensus 128 ~~ri~v~~Sg~g--~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~-~a~~~gIp--~~~~~~~-~~~~~------ 195 (325)
+.|+++++..+. .-+..++.++++. .+...|+|... .+..+.+ +.+.++|| -+.++.. .+..+
T Consensus 9 ~~~~~~v~GtRpe~~k~~p~~~~l~~~---~~~~~~~tgqh--~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~ 83 (385)
T 4hwg_A 9 MLKVMTIVGTRPELIKLCCVISEFDKH---TKHILVHTGQN--YAYELNQVFFDDMGIRKPDYFLEVAADNTAKSIGLVI 83 (385)
T ss_dssp CCEEEEEECSHHHHHHHHHHHHHHHHH---SEEEEEECSCH--HHHHHTHHHHC-CCCCCCSEECCCCCCCSHHHHHHHH
T ss_pred hhheeEEEEcCHhHHHHHHHHHHHHhc---CCEEEEEeCCC--CChhHHHHHHhhCCCCCCceecCCCCCCHHHHHHHHH
Confidence 578877662222 3556677776643 56677777542 1112333 45778884 3434311 11111
Q ss_pred HHHHHHhc--CCCEEEEeccc-cccChhHHhh--cCCCEEEEcCCCCCCCCCCcH
Q 020508 196 EELLELVQ--NTDFLVLARYM-QILSGKFLRS--YGKDVINIHHGLLPSFKGGKP 245 (325)
Q Consensus 196 ~~~~~~l~--~~Dliv~~g~~-~il~~~~l~~--~~~~~iNiHpslLP~yRG~~p 245 (325)
..+.+.++ +||++++.|.. -.+. .+.. .+..++.++.++ ..|+.+.|
T Consensus 84 ~~l~~~l~~~kPD~Vlv~gd~~~~~a--alaA~~~~IPv~h~eagl-rs~~~~~p 135 (385)
T 4hwg_A 84 EKVDEVLEKEKPDAVLFYGDTNSCLS--AIAAKRRKIPIFHMEAGN-RCFDQRVP 135 (385)
T ss_dssp HHHHHHHHHHCCSEEEEESCSGGGGG--HHHHHHTTCCEEEESCCC-CCSCTTST
T ss_pred HHHHHHHHhcCCcEEEEECCchHHHH--HHHHHHhCCCEEEEeCCC-ccccccCc
Confidence 13344444 89999998842 3343 3332 345688888876 44554443
No 238
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Probab=30.91 E-value=2.3e+02 Score=25.42 Aligned_cols=129 Identities=12% Similarity=0.087 Sum_probs=71.1
Q ss_pred CCceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCC
Q 020508 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (325)
Q Consensus 127 ~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 205 (325)
..++|+|++.|. |..+...+... +.+|. +.++.. .. ..+.+.|+.+ .+ +.+.++++
T Consensus 141 ~g~~vgIIG~G~IG~~~A~~l~~~-----G~~V~--~~d~~~---~~--~~~~~~g~~~--~~---------l~ell~~a 197 (313)
T 2ekl_A 141 AGKTIGIVGFGRIGTKVGIIANAM-----GMKVL--AYDILD---IR--EKAEKINAKA--VS---------LEELLKNS 197 (313)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHT-----TCEEE--EECSSC---CH--HHHHHTTCEE--CC---------HHHHHHHC
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHC-----CCEEE--EECCCc---ch--hHHHhcCcee--cC---------HHHHHhhC
Confidence 357899987765 55555444431 45654 233321 12 2467778653 11 22344478
Q ss_pred CEEEEec-----cccccChhHHhhcCCCEEEEcCCCCCCCCCC----cHHHHHHHhCCcEeEEEEEEecCCC-CCC---C
Q 020508 206 DFLVLAR-----YMQILSGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQAFDAGVKLIGATSHFVTEEL-DAG---P 272 (325)
Q Consensus 206 Dliv~~g-----~~~il~~~~l~~~~~~~iNiHpslLP~yRG~----~pi~~ai~~G~~~~GvTvh~v~~~~-D~G---~ 272 (325)
|+++++- ...++.++.++..+.+.+-+.-| ||. ..+..++.+| ...|.-+-....+- ... |
T Consensus 198 DvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~a-----rg~~vd~~aL~~aL~~g-~i~ga~lDv~~~eP~~~~~~~~ 271 (313)
T 2ekl_A 198 DVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTS-----RAVAVNGKALLDYIKKG-KVYAYATDVFWNEPPKEEWELE 271 (313)
T ss_dssp SEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESS-----CGGGBCHHHHHHHHHTT-CEEEEEESCCSSSSCCSHHHHH
T ss_pred CEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECC-----CCcccCHHHHHHHHHcC-CCcEEEEecCCCCCCCCcccch
Confidence 9998874 34677788888887665444443 342 2467777776 46666655555442 223 3
Q ss_pred eEEEEEEeCCCC
Q 020508 273 IIEQMVERVSHR 284 (325)
Q Consensus 273 Ii~Q~~~~I~~~ 284 (325)
.+....+-+.|.
T Consensus 272 L~~~~nviltPH 283 (313)
T 2ekl_A 272 LLKHERVIVTTH 283 (313)
T ss_dssp HHHSTTEEECCS
T ss_pred HhhCCCEEECCc
Confidence 443344445454
No 239
>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*
Probab=30.83 E-value=1.6e+02 Score=27.19 Aligned_cols=91 Identities=11% Similarity=0.114 Sum_probs=47.0
Q ss_pred CCceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecC-C--------------
Q 020508 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA-K-------------- 190 (325)
Q Consensus 127 ~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~-~-------------- 190 (325)
+..||+|++.|. |.....++.. ++++|. +.++.. .-.+.++++|..+..++. .
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~-----~Ga~V~--~~d~~~----~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~ 239 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKR-----LGAVVM--ATDVRA----ATKEQVESLGGKFITVDDEAMKTAETAGGYAKEM 239 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH-----TTCEEE--EECSCS----TTHHHHHHTTCEECCC------------------
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-----CCCEEE--EEeCCH----HHHHHHHHcCCeEEeecccccccccccccchhhc
Confidence 357999988764 4444444433 245532 333321 124556678865431110 0
Q ss_pred ----CChhHHHHHHHhcCCCEEEEecc------ccccChhHHhhcCCC
Q 020508 191 ----ENEREEELLELVQNTDFLVLARY------MQILSGKFLRSYGKD 228 (325)
Q Consensus 191 ----~~~~~~~~~~~l~~~Dliv~~g~------~~il~~~~l~~~~~~ 228 (325)
.....+.+.+.+.++|+++.+.+ ..++..+.++..+.+
T Consensus 240 s~~~~~~~~~~l~~~~~~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g 287 (384)
T 1l7d_A 240 GEEFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPG 287 (384)
T ss_dssp -----CCHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTT
T ss_pred CHHHHhhhHHHHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCC
Confidence 00011225555568999998762 246677777776544
No 240
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Probab=30.73 E-value=69 Score=30.93 Aligned_cols=86 Identities=13% Similarity=0.140 Sum_probs=51.0
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCC
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 206 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 206 (325)
-++|+|++-|. |..+..++... +.+|. +++++ ..-...|...|..+. .+.+.++++|
T Consensus 211 GktVgIiG~G~IG~~vA~~Lka~-----Ga~Vi--v~D~~----p~~a~~A~~~G~~~~-----------sL~eal~~AD 268 (436)
T 3h9u_A 211 GKTACVCGYGDVGKGCAAALRGF-----GARVV--VTEVD----PINALQAAMEGYQVL-----------LVEDVVEEAH 268 (436)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-----TCEEE--EECSC----HHHHHHHHHTTCEEC-----------CHHHHTTTCS
T ss_pred CCEEEEEeeCHHHHHHHHHHHHC-----CCEEE--EECCC----hhhhHHHHHhCCeec-----------CHHHHHhhCC
Confidence 35777766554 44444344331 34532 34442 111233555665432 1445566899
Q ss_pred EEEEec-cccccChhHHhhcCCCEEEEcCC
Q 020508 207 FLVLAR-YMQILSGKFLRSYGKDVINIHHG 235 (325)
Q Consensus 207 liv~~g-~~~il~~~~l~~~~~~~iNiHps 235 (325)
++++.. -..+|..+.++..+.+.+=++.|
T Consensus 269 VVilt~gt~~iI~~e~l~~MK~gAIVINvg 298 (436)
T 3h9u_A 269 IFVTTTGNDDIITSEHFPRMRDDAIVCNIG 298 (436)
T ss_dssp EEEECSSCSCSBCTTTGGGCCTTEEEEECS
T ss_pred EEEECCCCcCccCHHHHhhcCCCcEEEEeC
Confidence 998864 35789999999999898888887
No 241
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=30.60 E-value=66 Score=25.04 Aligned_cols=18 Identities=33% Similarity=0.704 Sum_probs=15.2
Q ss_pred chHHHHHHHCCCCEEEec
Q 020508 171 SHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 171 ~~~~~~a~~~gIp~~~~~ 188 (325)
..+..+|+++|||++.++
T Consensus 53 ~~l~~lc~~~~VP~~~v~ 70 (121)
T 2lbw_A 53 SHIPVLCEDHSVPYIFIP 70 (121)
T ss_dssp HHHHHHHHHTCCCEEECC
T ss_pred HHHHHHHHhcCCcEEEEC
Confidence 347889999999998776
No 242
>3by5_A Cobalamin biosynthesis protein; structural genomics, unknown function; 2.52A {Agrobacterium tumefaciens str} SCOP: c.151.1.1
Probab=30.46 E-value=94 Score=25.54 Aligned_cols=31 Identities=0% Similarity=0.052 Sum_probs=23.4
Q ss_pred EEEEEeCCCCCCCchHHHHHHHCCCCEEEec
Q 020508 158 ITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 158 I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~ 188 (325)
|.++.|-..+.....+.++|+++|+|+..++
T Consensus 41 v~~lATid~K~dE~gL~e~A~~lgvPl~~~~ 71 (155)
T 3by5_A 41 VDYLATAPLKADEAGLAEAAKGLSLSLEIVA 71 (155)
T ss_dssp CCEEEESSCCSCCHHHHHHHHHTTCCEEECC
T ss_pred eEEEEchhhhCCCHHHHHHHHHhCCCeEEEC
Confidence 6666665444345679999999999999876
No 243
>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}
Probab=30.13 E-value=2.8e+02 Score=25.01 Aligned_cols=100 Identities=12% Similarity=0.156 Sum_probs=56.5
Q ss_pred CceEEEEEeCC-c-hHHHHHHHHhhcCCCCceEEEEEeCCCCCCCch-HHHHHHHCCCCEEEecCCCChhHHHHHHHhcC
Q 020508 128 KYKVAVLASKQ-E-HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSH-VIRFLERHGIPYHYLCAKENEREEELLELVQN 204 (325)
Q Consensus 128 ~~ri~v~~Sg~-g-~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~-~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~ 204 (325)
..+++|+++|. + +.++.|... . +.+-+. +.|+. +... ..++.+++|+++...+ +.+.+++
T Consensus 121 ~~~v~iIGaG~~a~~~~~al~~~---~--~~~~V~-v~~r~--~a~~la~~l~~~~g~~~~~~~---------~~eav~~ 183 (313)
T 3hdj_A 121 SSVLGLFGAGTQGAEHAAQLSAR---F--ALEAIL-VHDPY--ASPEILERIGRRCGVPARMAA---------PADIAAQ 183 (313)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH---S--CCCEEE-EECTT--CCHHHHHHHHHHHTSCEEECC---------HHHHHHH
T ss_pred CcEEEEECccHHHHHHHHHHHHh---C--CCcEEE-EECCc--HHHHHHHHHHHhcCCeEEEeC---------HHHHHhh
Confidence 46899999885 2 344444432 1 122233 44554 2222 2334445788875431 2234457
Q ss_pred CCEEEEeccc--cccChhHHhhcCCCEEEEcCCCCCCCCCCcHH
Q 020508 205 TDFLVLARYM--QILSGKFLRSYGKDVINIHHGLLPSFKGGKPA 246 (325)
Q Consensus 205 ~Dliv~~g~~--~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi 246 (325)
+|+|+++--. .+++.+.+ -++..|+--.|.-|..|=..|-
T Consensus 184 aDIVi~aT~s~~pvl~~~~l--~~G~~V~~vGs~~p~~~El~~~ 225 (313)
T 3hdj_A 184 ADIVVTATRSTTPLFAGQAL--RAGAFVGAIGSSLPHTRELDDE 225 (313)
T ss_dssp CSEEEECCCCSSCSSCGGGC--CTTCEEEECCCSSTTCCCCCHH
T ss_pred CCEEEEccCCCCcccCHHHc--CCCcEEEECCCCCCchhhcCHH
Confidence 9999998643 34444332 2456888888888887777654
No 244
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2
Probab=30.03 E-value=46 Score=32.82 Aligned_cols=35 Identities=14% Similarity=0.279 Sum_probs=30.6
Q ss_pred ceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeec
Q 020508 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV 77 (325)
Q Consensus 41 ~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~ 77 (325)
....+.+.-|||||-.+++++.|. +.||++++-..
T Consensus 337 r~~~~~v~~p~~pg~l~~~~~~l~--~~~i~~~~~~~ 371 (514)
T 1tdj_A 337 REALLAVTIPEEKGSFLKFCQLLG--GRSVTEFNYRF 371 (514)
T ss_dssp CEEEEEEECCBSSSCSHHHHHTTS--SSEEEEEEEEC
T ss_pred CcccccccCCCCCchHHHHHHHhC--CCceEEEEeec
Confidence 456788899999999999999998 79999998863
No 245
>3n8i_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, hydrolase, protein-ligand complex; HET: NLA; 1.50A {Homo sapiens} SCOP: c.44.1.1 PDB: 5pnt_A* 1xww_A 1bvh_A 1dg9_A* 1phr_A 1pnt_A 1z12_A 1z13_A 1c0e_A 2p4u_A
Probab=29.75 E-value=85 Score=25.56 Aligned_cols=83 Identities=11% Similarity=0.182 Sum_probs=45.1
Q ss_pred CCceEEEEEeCCc--hHHHH-HHHHh-hcCCCC--ceEEEEEeCC---CCCCCchHHHHHHHCCCCEEEecCCCChhHHH
Q 020508 127 PKYKVAVLASKQE--HCLVD-FLYGW-QEGKLP--VEITCVISNH---DRGPNSHVIRFLERHGIPYHYLCAKENEREEE 197 (325)
Q Consensus 127 ~~~ri~v~~Sg~g--~~l~~-Ll~~~-~~~~l~--~~I~~Vvt~~---~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~ 197 (325)
+++||.|+.+|+- |.+.+ ++... ....+. .+|.---+.+ ..+.+....+.++++||++-+.++.. .+ +
T Consensus 4 ~~~~vLFVC~gN~cRSpmAE~~~~~~~~~~gl~~~~~v~SAGt~~~~~G~~~~~~a~~~l~~~Gid~~~~ar~l--~~-~ 80 (157)
T 3n8i_A 4 ATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRGQSCMKRHGIPMSHVARQI--TK-E 80 (157)
T ss_dssp CCEEEEEEESSSSSHHHHHHHHHHHHHHHTTCGGGEEEEEEESSSTTTTCCCCHHHHHHHHHTTCCCCCCCCBC--CH-H
T ss_pred CCCEEEEECCCchhHHHHHHHHHHHHHHHcCCCCcEEEEeeecCccccCCCCCHHHHHHHHHcCcCCCCceeEC--CH-H
Confidence 4689999888874 55543 55443 222221 3333222222 12234567889999999972212221 11 1
Q ss_pred HHHHhcCCCEEEEecccc
Q 020508 198 LLELVQNTDFLVLARYMQ 215 (325)
Q Consensus 198 ~~~~l~~~Dliv~~g~~~ 215 (325)
. +..+|+|+...-..
T Consensus 81 ~---~~~~DlIi~M~~~n 95 (157)
T 3n8i_A 81 D---FATFDYILCMDESN 95 (157)
T ss_dssp H---HHHCSEEEESSHHH
T ss_pred H---cCCCCEEEEeCcHH
Confidence 1 23689999987543
No 246
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas aeruginosa PA01, PSI-2, structural genomics; HET: PG4; 2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A* 3q3c_A*
Probab=29.75 E-value=44 Score=29.61 Aligned_cols=64 Identities=11% Similarity=0.044 Sum_probs=33.7
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCC
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 206 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 206 (325)
++||+|++.|. |..+...+.. . +++|. +.+++ ..-.+.+.+.|+... . ...+.++++|
T Consensus 3 m~~I~iiG~G~mG~~~a~~l~~--~---G~~V~--~~d~~----~~~~~~~~~~g~~~~--~--------~~~~~~~~aD 61 (302)
T 2h78_A 3 MKQIAFIGLGHMGAPMATNLLK--A---GYLLN--VFDLV----QSAVDGLVAAGASAA--R--------SARDAVQGAD 61 (302)
T ss_dssp CCEEEEECCSTTHHHHHHHHHH--T---TCEEE--EECSS----HHHHHHHHHTTCEEC--S--------SHHHHHTTCS
T ss_pred CCEEEEEeecHHHHHHHHHHHh--C---CCeEE--EEcCC----HHHHHHHHHCCCeEc--C--------CHHHHHhCCC
Confidence 57999999887 6666554432 2 35543 33442 122333444565432 1 1223344678
Q ss_pred EEEEec
Q 020508 207 FLVLAR 212 (325)
Q Consensus 207 liv~~g 212 (325)
+++++-
T Consensus 62 vvi~~v 67 (302)
T 2h78_A 62 VVISML 67 (302)
T ss_dssp EEEECC
T ss_pred eEEEEC
Confidence 777764
No 247
>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}
Probab=29.71 E-value=30 Score=31.86 Aligned_cols=65 Identities=15% Similarity=0.088 Sum_probs=0.0
Q ss_pred CCceEEEEEeCC-chH-HHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhc-
Q 020508 127 PKYKVAVLASKQ-EHC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ- 203 (325)
Q Consensus 127 ~~~ri~v~~Sg~-g~~-l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~- 203 (325)
+++||+|++.|. |.. ....+.... +.++++|+.... .+.+++++.+-.+-+ +.+++.
T Consensus 4 ~~~rvgiiG~G~~g~~~~~~~l~~~~----~~~l~av~d~~~-------~~~~~~~~~~~~~~~---------~~~ll~~ 63 (362)
T 3fhl_A 4 EIIKTGLAAFGMSGQVFHAPFISTNP----HFELYKIVERSK-------ELSKERYPQASIVRS---------FKELTED 63 (362)
T ss_dssp CCEEEEESCCSHHHHHTTHHHHHHCT----TEEEEEEECSSC-------CGGGTTCTTSEEESC---------SHHHHTC
T ss_pred CceEEEEECCCHHHHHHHHHHHhhCC----CeEEEEEEcCCH-------HHHHHhCCCCceECC---------HHHHhcC
Q ss_pred -CCCEEEEe
Q 020508 204 -NTDFLVLA 211 (325)
Q Consensus 204 -~~Dliv~~ 211 (325)
++|+++++
T Consensus 64 ~~vD~V~i~ 72 (362)
T 3fhl_A 64 PEIDLIVVN 72 (362)
T ss_dssp TTCCEEEEC
T ss_pred CCCCEEEEe
No 248
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}
Probab=29.26 E-value=42 Score=30.14 Aligned_cols=66 Identities=15% Similarity=0.142 Sum_probs=34.3
Q ss_pred CCCceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcC
Q 020508 126 DPKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQN 204 (325)
Q Consensus 126 ~~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~ 204 (325)
..++||+|++.|. |..+...+.. . +++|. +.+++. ..+ +.+.+.|+.+. . ...+.+++
T Consensus 19 ~~m~~I~iIG~G~mG~~~A~~l~~--~---G~~V~--~~dr~~---~~~-~~l~~~g~~~~--~--------~~~~~~~~ 77 (310)
T 3doj_A 19 SHMMEVGFLGLGIMGKAMSMNLLK--N---GFKVT--VWNRTL---SKC-DELVEHGASVC--E--------SPAEVIKK 77 (310)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHHH--T---TCEEE--EECSSG---GGG-HHHHHTTCEEC--S--------SHHHHHHH
T ss_pred ccCCEEEEECccHHHHHHHHHHHH--C---CCeEE--EEeCCH---HHH-HHHHHCCCeEc--C--------CHHHHHHh
Confidence 3468999998886 6665554432 2 35554 334431 222 33345666432 1 11223345
Q ss_pred CCEEEEec
Q 020508 205 TDFLVLAR 212 (325)
Q Consensus 205 ~Dliv~~g 212 (325)
+|+++++-
T Consensus 78 aDvvi~~v 85 (310)
T 3doj_A 78 CKYTIAML 85 (310)
T ss_dssp CSEEEECC
T ss_pred CCEEEEEc
Confidence 78887764
No 249
>2wmy_A WZB, putative acid phosphatase WZB; hydrolase; 2.21A {Escherichia coli}
Probab=29.15 E-value=97 Score=24.85 Aligned_cols=80 Identities=16% Similarity=0.160 Sum_probs=45.0
Q ss_pred CceEEEEEeCCc--hHHHH-HHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEe-cCCCChhHHHHHHHhc
Q 020508 128 KYKVAVLASKQE--HCLVD-FLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYL-CAKENEREEELLELVQ 203 (325)
Q Consensus 128 ~~ri~v~~Sg~g--~~l~~-Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~-~~~~~~~~~~~~~~l~ 203 (325)
++||.|+.+|+- |.+.+ ++.... +++.+.-.++-..+..+.+....+.++++||++... ++.. . ++ .+.
T Consensus 8 m~~VLFVC~gN~cRSpmAEal~r~~~-~~~~v~SAGt~~~~g~~~~p~a~~~l~e~Gid~~~~~ar~l--~-~~---~~~ 80 (150)
T 2wmy_A 8 FDSILVICTGNICRSPIGERLLRRLL-PSKKINSAGVGALVDHTADESAIRVAEKNGLCLKGHRGTKF--T-SA---LAR 80 (150)
T ss_dssp CCEEEEEESSSSSHHHHHHHHHHHHC-TTSEEEEEETTCCTTCCCCHHHHHHHHHTTCCCTTCCCCBC--C-HH---HHT
T ss_pred cCEEEEEcCCchHHHHHHHHHHHHhc-CCCEEEeccccCCCCCCCCHHHHHHHHHcCCCccCCcccCC--C-HH---Hhc
Confidence 358998888874 55544 555433 332222223322222334566889999999997421 1111 1 11 133
Q ss_pred CCCEEEEeccc
Q 020508 204 NTDFLVLARYM 214 (325)
Q Consensus 204 ~~Dliv~~g~~ 214 (325)
.+|+|+...-.
T Consensus 81 ~~DlIi~m~~~ 91 (150)
T 2wmy_A 81 QYDLLLVMEYS 91 (150)
T ss_dssp TCSEEEESCHH
T ss_pred cCCEEEEcCHH
Confidence 78999998754
No 250
>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}
Probab=28.97 E-value=32 Score=29.70 Aligned_cols=50 Identities=8% Similarity=0.179 Sum_probs=26.0
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCC-ceEEEEEeCCCCCCCchHHHHHHHCCCCE
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLP-VEITCVISNHDRGPNSHVIRFLERHGIPY 184 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~-~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~ 184 (325)
++||+|++.|. |+.+..-+.. .|..+ .+|. +.+++ ...+.++++++|+.+
T Consensus 2 ~~~i~iIG~G~mG~~~a~~l~~--~g~~~~~~V~--~~~r~---~~~~~~~~~~~g~~~ 53 (247)
T 3gt0_A 2 DKQIGFIGCGNMGMAMIGGMIN--KNIVSSNQII--CSDLN---TANLKNASEKYGLTT 53 (247)
T ss_dssp CCCEEEECCSHHHHHHHHHHHH--TTSSCGGGEE--EECSC---HHHHHHHHHHHCCEE
T ss_pred CCeEEEECccHHHHHHHHHHHh--CCCCCCCeEE--EEeCC---HHHHHHHHHHhCCEE
Confidence 36899998886 5554443322 23111 2443 33442 234555666677764
No 251
>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}
Probab=27.80 E-value=44 Score=29.33 Aligned_cols=19 Identities=11% Similarity=-0.013 Sum_probs=13.1
Q ss_pred CceEEEEEeCC-chHHHHHH
Q 020508 128 KYKVAVLASKQ-EHCLVDFL 146 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll 146 (325)
++||+|++.|. |+.+...+
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l 22 (295)
T 1yb4_A 3 AMKLGFIGLGIMGSPMAINL 22 (295)
T ss_dssp -CEEEECCCSTTHHHHHHHH
T ss_pred CCEEEEEccCHHHHHHHHHH
Confidence 47999999886 66655444
No 252
>2fek_A Low molecular weight protein-tyrosine- phosphatase WZB; phosphate binding, hydrolase; NMR {Escherichia coli K12}
Probab=27.58 E-value=1.1e+02 Score=25.21 Aligned_cols=80 Identities=14% Similarity=0.157 Sum_probs=44.8
Q ss_pred CceEEEEEeCCc--hHHHH-HHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEe-cCCCChhHHHHHHHhc
Q 020508 128 KYKVAVLASKQE--HCLVD-FLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYL-CAKENEREEELLELVQ 203 (325)
Q Consensus 128 ~~ri~v~~Sg~g--~~l~~-Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~-~~~~~~~~~~~~~~l~ 203 (325)
++||.|+.+|+- |.+.+ +++... +++.+.-.++-..+..+.+....+.++++||++... ++.. . ++. +.
T Consensus 22 m~~VLFVCtgN~cRSpmAEal~r~~~-~~~~v~SAGt~~~~g~~~~p~a~~vl~e~Gid~s~~~sr~l--~-~~~---~~ 94 (167)
T 2fek_A 22 FNNILVVCVGNICRSPTAERLLQRYH-PELKVESAGLGALVGKGADPTAISVAAEHQLSLEGHCARQI--S-RRL---CR 94 (167)
T ss_dssp CCEEEEEESSSSSHHHHHHHHHHHHC-TTCEEEEEETTCCTTCCCCHHHHHHHHHTTCCCTTCCCCBC--C-HHH---HH
T ss_pred cCeEEEEcCCcHHHHHHHHHHHHHhc-CCeEEEeeecCCCCCCCCCHHHHHHHHHcCCCccCCcCccC--C-HHH---hc
Confidence 458999888874 55544 555433 322222223322222334566889999999997421 1111 1 111 22
Q ss_pred CCCEEEEeccc
Q 020508 204 NTDFLVLARYM 214 (325)
Q Consensus 204 ~~Dliv~~g~~ 214 (325)
.+|+|+...-.
T Consensus 95 ~~DlIitM~~~ 105 (167)
T 2fek_A 95 NYDLILTMEKR 105 (167)
T ss_dssp HSSEEEESCHH
T ss_pred cCCEEEEcCHH
Confidence 68999998754
No 253
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=27.34 E-value=82 Score=25.11 Aligned_cols=18 Identities=22% Similarity=0.482 Sum_probs=15.4
Q ss_pred chHHHHHHHCCCCEEEec
Q 020508 171 SHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 171 ~~~~~~a~~~gIp~~~~~ 188 (325)
..+..+|+++|||+++++
T Consensus 65 ~~l~~lc~~~~VP~~~v~ 82 (134)
T 2ale_A 65 LHLPLLCEDKNVPYVFVP 82 (134)
T ss_dssp THHHHHHHHHTCCEEEES
T ss_pred HHHHHHHHhcCCCEEEEC
Confidence 457899999999998876
No 254
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=27.22 E-value=2.4e+02 Score=27.26 Aligned_cols=55 Identities=18% Similarity=0.053 Sum_probs=37.2
Q ss_pred ceEEEEEeCCc-h-HHHHHHHHhhcCCCCceEEEEEeCCCCC-C--CchHHHHHHHCCCCEEEec
Q 020508 129 YKVAVLASKQE-H-CLVDFLYGWQEGKLPVEITCVISNHDRG-P--NSHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 129 ~ri~v~~Sg~g-~-~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~-~--~~~~~~~a~~~gIp~~~~~ 188 (325)
.|+++..||.- | .+..|+... +.++.+|..++.-. . ...+.++|+++|||++.++
T Consensus 210 ~kvvvalSGGvDSsvla~ll~~~-----g~~v~av~vd~g~~~~~e~~~v~~~~~~lgi~~~vv~ 269 (503)
T 2ywb_A 210 DRVLLAVSGGVDSSTLALLLAKA-----GVDHLAVFVDHGLLRLGEREEVEGALRALGVNLLVVD 269 (503)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHH-----TCEEEEEEEECSCSCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred ccEEEEecCCcchHHHHHHHHHc-----CCeEEEEEEeCCCCChHHHHHHHHHHHHhCCCEEEEE
Confidence 58999999853 3 444455443 35777887765321 1 1357888999999999886
No 255
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=27.12 E-value=1.5e+02 Score=24.36 Aligned_cols=28 Identities=7% Similarity=-0.109 Sum_probs=21.7
Q ss_pred CceEEEEEeCCchHHHHHHHHhhcCCCCceEEEE
Q 020508 128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCV 161 (325)
Q Consensus 128 ~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~V 161 (325)
..||.-+++|.|.....|.+. +.+|++|
T Consensus 23 ~~~vLD~GCG~G~~~~~la~~------g~~V~gv 50 (203)
T 1pjz_A 23 GARVLVPLCGKSQDMSWLSGQ------GYHVVGA 50 (203)
T ss_dssp TCEEEETTTCCSHHHHHHHHH------CCEEEEE
T ss_pred CCEEEEeCCCCcHhHHHHHHC------CCeEEEE
Confidence 468999999999887777653 3577777
No 256
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=27.12 E-value=1.9e+02 Score=25.15 Aligned_cols=57 Identities=9% Similarity=0.071 Sum_probs=36.1
Q ss_pred CceEEEEEeCCc-hH-HHHHHHHhhcCCCCceEEEEEeCCCCCCC---chHHHHHHHCCCCEEEec
Q 020508 128 KYKVAVLASKQE-HC-LVDFLYGWQEGKLPVEITCVISNHDRGPN---SHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 128 ~~ri~v~~Sg~g-~~-l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~---~~~~~~a~~~gIp~~~~~ 188 (325)
..|+++..||.- |. +..++... ++.++.+|..+...... ..+.++|++.|||++.++
T Consensus 26 ~~~vvv~lSGGiDSsv~a~l~~~~----~g~~v~av~~~~~~~~~~~~~~a~~~a~~lgi~~~~v~ 87 (249)
T 3p52_A 26 SQGVVLGLSGGIDSALVATLCKRA----LKENVFALLMPTQISNKANLEDALRLCADLNLEYKIIE 87 (249)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHH----HTTSEEEEECCSCCSSCHHHHHHHHHHHHHTCEEEECC
T ss_pred CCCEEEEcCCCHHHHHHHHHHHHH----cCCcEEEEEecCCCCCHHHHHHHHHHHHHhCCCEEEEE
Confidence 358999999862 43 33344332 13567777766532111 347889999999998776
No 257
>3ff1_A Glucose-6-phosphate isomerase; alpha beta, rossmann fold, gluconeogenesis, glycolysis, structural genomics; HET: G6Q; 1.65A {Staphylococcus aureus subsp} SCOP: c.80.1.2 PDB: 3ifs_A*
Probab=26.60 E-value=71 Score=30.96 Aligned_cols=74 Identities=14% Similarity=0.033 Sum_probs=45.1
Q ss_pred CCChHHHHHHHHhhhhhhcccceeeeecCCCCCceEEEEEeCCchHHHHHHH------Hhhc--CC--CCceEEEEEeCC
Q 020508 96 KWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLY------GWQE--GK--LPVEITCVISNH 165 (325)
Q Consensus 96 ~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~~~~~ri~v~~Sg~g~~l~~Ll~------~~~~--~~--l~~~I~~Vvt~~ 165 (325)
..|.+.+.+.|+.+- ++.-+.+.+|++|+..+.+.. .+.+ |. ....+++| |++
T Consensus 117 nvDp~~i~~~l~~l~----------------~~~Tl~iViSKSgtT~ET~~n~~~~r~~l~~~~g~~~~~~h~vav-T~~ 179 (446)
T 3ff1_A 117 HLSSTYTKELVDYLA----------------DKDFSVNVISKSGTTTEPAVAFRLFKQLVEERYGKEEAQKRIFAT-TDK 179 (446)
T ss_dssp SCCHHHHHHHHHHGG----------------GCCEEEEEECSSSCCHHHHHHHHHHHHHHHHHHCHHHHHHHEEEE-ECS
T ss_pred CCCHHHHHHHHHhcC----------------ccceEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCcccccceEEEE-eCC
Confidence 367788888776531 123566677999864433222 1111 21 11356664 776
Q ss_pred CCCCCchHHHHHHHCCCCEEEecC
Q 020508 166 DRGPNSHVIRFLERHGIPYHYLCA 189 (325)
Q Consensus 166 ~~~~~~~~~~~a~~~gIp~~~~~~ 189 (325)
. ..++.+.|++.||+++.++.
T Consensus 180 ~---~g~L~~~a~~~G~~~F~~~d 200 (446)
T 3ff1_A 180 E---KGALKQLATNEGYETFIVPD 200 (446)
T ss_dssp S---CSHHHHHHHHHTCEEEECCT
T ss_pred C---cchhhhHHHHcCCeEEEecc
Confidence 4 35899999999999988763
No 258
>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*
Probab=26.49 E-value=99 Score=30.29 Aligned_cols=88 Identities=13% Similarity=0.103 Sum_probs=53.1
Q ss_pred CCceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCC
Q 020508 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (325)
Q Consensus 127 ~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 205 (325)
..++|+|++-|. |..+...+.. ++.+|. +.+++. .. ...+...|..+. .+.+.++++
T Consensus 276 ~GktVgIIG~G~IG~~vA~~l~~-----~G~~V~--v~d~~~---~~-~~~a~~~G~~~~-----------~l~ell~~a 333 (494)
T 3d64_A 276 AGKIAVVAGYGDVGKGCAQSLRG-----LGATVW--VTEIDP---IC-ALQAAMEGYRVV-----------TMEYAADKA 333 (494)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHT-----TTCEEE--EECSCH---HH-HHHHHTTTCEEC-----------CHHHHTTTC
T ss_pred CCCEEEEEccCHHHHHHHHHHHH-----CCCEEE--EEeCCh---Hh-HHHHHHcCCEeC-----------CHHHHHhcC
Confidence 356899987664 4444444432 245643 344421 11 113445565431 134556689
Q ss_pred CEEEEe-ccccccChhHHhhcCCCEEEEcCCC
Q 020508 206 DFLVLA-RYMQILSGKFLRSYGKDVINIHHGL 236 (325)
Q Consensus 206 Dliv~~-g~~~il~~~~l~~~~~~~iNiHpsl 236 (325)
|+++++ +-..+|..+.++..+.+.+=+..|-
T Consensus 334 DiVi~~~~t~~lI~~~~l~~MK~gAilINvgr 365 (494)
T 3d64_A 334 DIFVTATGNYHVINHDHMKAMRHNAIVCNIGH 365 (494)
T ss_dssp SEEEECSSSSCSBCHHHHHHCCTTEEEEECSS
T ss_pred CEEEECCCcccccCHHHHhhCCCCcEEEEcCC
Confidence 999998 5567899999999998877676664
No 259
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}
Probab=26.38 E-value=1.2e+02 Score=26.88 Aligned_cols=70 Identities=11% Similarity=0.159 Sum_probs=38.6
Q ss_pred ceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhc--CC
Q 020508 129 YKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--NT 205 (325)
Q Consensus 129 ~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~--~~ 205 (325)
+||+|++.|. |... ++..+..+ +.++++|+... .....++++++|+|.. +. . +.++++ ++
T Consensus 1 ~~vgiiG~G~~g~~~--~~~~l~~~--~~~~vav~d~~----~~~~~~~~~~~g~~~~-~~----~----~~~~l~~~~~ 63 (332)
T 2glx_A 1 NRWGLIGASTIAREW--VIGAIRAT--GGEVVSMMSTS----AERGAAYATENGIGKS-VT----S----VEELVGDPDV 63 (332)
T ss_dssp CEEEEESCCHHHHHT--HHHHHHHT--TCEEEEEECSC----HHHHHHHHHHTTCSCC-BS----C----HHHHHTCTTC
T ss_pred CeEEEEcccHHHHHh--hhHHhhcC--CCeEEEEECCC----HHHHHHHHHHcCCCcc-cC----C----HHHHhcCCCC
Confidence 4899988775 3332 02222222 47888776533 2345678889998722 11 1 223343 57
Q ss_pred CEEEEecccc
Q 020508 206 DFLVLARYMQ 215 (325)
Q Consensus 206 Dliv~~g~~~ 215 (325)
|+++++.-..
T Consensus 64 D~V~i~tp~~ 73 (332)
T 2glx_A 64 DAVYVSTTNE 73 (332)
T ss_dssp CEEEECSCGG
T ss_pred CEEEEeCChh
Confidence 8888775433
No 260
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=26.34 E-value=3.3e+02 Score=23.87 Aligned_cols=103 Identities=15% Similarity=0.153 Sum_probs=54.5
Q ss_pred CCceEEEEEeC-----Cc--hHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCC----hhH
Q 020508 127 PKYKVAVLASK-----QE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKEN----ERE 195 (325)
Q Consensus 127 ~~~ri~v~~Sg-----~g--~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~----~~~ 195 (325)
+++||+++... .| ..+..|.+.+ . +++|..+..... ......+....+++++.++.... ...
T Consensus 3 ~~mkIl~v~~~~~p~~gG~~~~~~~l~~~L-~---g~~v~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (394)
T 3okp_A 3 ASRKTLVVTNDFPPRIGGIQSYLRDFIATQ-D---PESIVVFASTQN---AEEAHAYDKTLDYEVIRWPRSVMLPTPTTA 75 (394)
T ss_dssp -CCCEEEEESCCTTSCSHHHHHHHHHHTTS-C---GGGEEEEEECSS---HHHHHHHHTTCSSEEEEESSSSCCSCHHHH
T ss_pred CCceEEEEeCccCCccchHHHHHHHHHHHh-c---CCeEEEEECCCC---ccchhhhccccceEEEEccccccccchhhH
Confidence 57899998852 22 2344555544 2 477765554432 12225556778999988773211 112
Q ss_pred HHHHHHhc--CCCEEEEeccccc-cChhHHhhcCCC-EE-EEcCCC
Q 020508 196 EELLELVQ--NTDFLVLARYMQI-LSGKFLRSYGKD-VI-NIHHGL 236 (325)
Q Consensus 196 ~~~~~~l~--~~Dliv~~g~~~i-l~~~~l~~~~~~-~i-NiHpsl 236 (325)
..+.+.++ ++|++.+.++... +-..++...+.. ++ .+|...
T Consensus 76 ~~l~~~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~ 121 (394)
T 3okp_A 76 HAMAEIIREREIDNVWFGAAAPLALMAGTAKQAGASKVIASTHGHE 121 (394)
T ss_dssp HHHHHHHHHTTCSEEEESSCTTGGGGHHHHHHTTCSEEEEECCSTH
T ss_pred HHHHHHHHhcCCCEEEECCcchHHHHHHHHHhcCCCcEEEEeccch
Confidence 34555565 8999987543221 222233333432 44 777553
No 261
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=26.03 E-value=1.3e+02 Score=23.03 Aligned_cols=54 Identities=17% Similarity=0.279 Sum_probs=30.7
Q ss_pred HHHHHHhhcCCCCceEEEEEeCCCCCC-CchHHHHHHHCCCCEEEecCCCChhHHHHHHHhc
Q 020508 143 VDFLYGWQEGKLPVEITCVISNHDRGP-NSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 203 (325)
Q Consensus 143 ~~Ll~~~~~~~l~~~I~~Vvt~~~~~~-~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 203 (325)
...+++++.|. ..++.+-.+-+... -..+..+|+++|||+..+++ -.++-.++.
T Consensus 33 ~~v~kal~~gk--a~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~s-----k~eLG~a~G 87 (119)
T 1rlg_A 33 NETTKAVERGL--AKLVYIAEDVDPPEIVAHLPLLCEEKNVPYIYVKS-----KNDLGRAVG 87 (119)
T ss_dssp HHHHHHHTTTC--CSEEEEESCCSCSTTTTHHHHHHHHHTCCEEEESC-----HHHHHHHTT
T ss_pred HHHHHHHHcCC--CcEEEEeCCCChHHHHHHHHHHHHHcCCCEEEeCC-----HHHHHHHhC
Confidence 34445555554 44443333332211 35688999999999987762 135555554
No 262
>2q8n_A Glucose-6-phosphate isomerase; TM1385, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: 2PE; 1.82A {Thermotoga maritima MSB8}
Probab=26.02 E-value=51 Score=32.03 Aligned_cols=55 Identities=5% Similarity=-0.033 Sum_probs=33.9
Q ss_pred eEEEEEeCCchHHHHHH------HHhhc--CCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEec
Q 020508 130 KVAVLASKQEHCLVDFL------YGWQE--GKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 130 ri~v~~Sg~g~~l~~Ll------~~~~~--~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~ 188 (325)
-+++.+|++|+..+.+. +.+.+ |+....+++| |++. ++++.+.|.+.||+++.++
T Consensus 142 TlvIviSKSGtT~ET~~~~~~ar~~l~~~~G~~~~~~VAv-T~~~---~s~L~~~A~~~Gi~~f~~~ 204 (460)
T 2q8n_A 142 TLFNVISKSGSTAEVMATYSIARGILEAYGLDPREHMLIT-TDPE---KGFLRKLVKEEGFRSLEVP 204 (460)
T ss_dssp EEEEEECSSSCCHHHHHHHHHHHHHHHHTTCCGGGTEEEE-ECSS---SSHHHHHHHHHTCEEEECC
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCccCeEEEE-eCCC---CChHHHHHHHhCCceEeec
Confidence 37788899986433322 22221 2122456654 4442 4789999999999888776
No 263
>1ulr_A Putative acylphosphatase; hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: d.58.10.1
Probab=26.00 E-value=1.9e+02 Score=20.96 Aligned_cols=58 Identities=17% Similarity=0.054 Sum_probs=42.6
Q ss_pred HHHHHHHhhhhhhcccceeeeecCCCCCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEE
Q 020508 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVI 162 (325)
Q Consensus 101 ~L~~~l~~l~~~l~~~~~~~~~~~~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vv 162 (325)
-+|.-...+|.+||+.-|. +..+ + =+|-+.+.|....+..+++.++.+...+.|..|-
T Consensus 16 GFR~~v~~~A~~lgl~G~V-~N~~-d--G~Vei~~eG~~~~i~~f~~~l~~gP~~a~V~~v~ 73 (88)
T 1ulr_A 16 GYRAFAQKKALELGLSGYA-ENLP-D--GRVEVVAEGPKEALELFLHHLKQGPRLARVEAVE 73 (88)
T ss_dssp SHHHHHHHHHHHTTCEEEE-EECT-T--SCEEEEEESCHHHHHHHHHHHHHCSTTCEEEEEE
T ss_pred CHHHHHHHHHHHcCCeEEE-EECC-C--CcEEEEEEeCHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 3777788889999999874 4222 2 2688888998888999998887654447776663
No 264
>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}
Probab=25.72 E-value=1.5e+02 Score=26.63 Aligned_cols=127 Identities=13% Similarity=0.166 Sum_probs=69.2
Q ss_pred CCceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCC
Q 020508 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (325)
Q Consensus 127 ~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 205 (325)
..++|+|++.|. |..+...+... +.+|. +.++.. . . +.+.+.|+.+. + +.+.++++
T Consensus 141 ~g~~vgIiG~G~IG~~~A~~l~~~-----G~~V~--~~d~~~--~-~--~~~~~~g~~~~--~---------l~ell~~a 197 (307)
T 1wwk_A 141 EGKTIGIIGFGRIGYQVAKIANAL-----GMNIL--LYDPYP--N-E--ERAKEVNGKFV--D---------LETLLKES 197 (307)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT-----TCEEE--EECSSC--C-H--HHHHHTTCEEC--C---------HHHHHHHC
T ss_pred CCceEEEEccCHHHHHHHHHHHHC-----CCEEE--EECCCC--C-h--hhHhhcCcccc--C---------HHHHHhhC
Confidence 346899987765 55555544432 45653 233321 1 2 45677787431 1 22344478
Q ss_pred CEEEEec-----cccccChhHHhhcCCC--EEEEcCCCCCCCCCC----cHHHHHHHhCCcEeEEEEEEecCCC--CCCC
Q 020508 206 DFLVLAR-----YMQILSGKFLRSYGKD--VINIHHGLLPSFKGG----KPAKQAFDAGVKLIGATSHFVTEEL--DAGP 272 (325)
Q Consensus 206 Dliv~~g-----~~~il~~~~l~~~~~~--~iNiHpslLP~yRG~----~pi~~ai~~G~~~~GvTvh~v~~~~--D~G~ 272 (325)
|+++++- ...++.++.++..+.+ ++|+ | ||. ..+..++.+|. ..|.-+-....+- ...|
T Consensus 198 DvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~--a-----rg~~vd~~aL~~aL~~g~-i~ga~lDv~~~eP~~~~~~ 269 (307)
T 1wwk_A 198 DVVTIHVPLVESTYHLINEERLKLMKKTAILINT--S-----RGPVVDTNALVKALKEGW-IAGAGLDVFEEEPLPKDHP 269 (307)
T ss_dssp SEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEEC--S-----CGGGBCHHHHHHHHHHTS-SSEEEESCCSSSSCCTTCG
T ss_pred CEEEEecCCChHHhhhcCHHHHhcCCCCeEEEEC--C-----CCcccCHHHHHHHHHhCC-CcEEEEecCCCCCCCCCCh
Confidence 9999874 3467778888887655 4555 2 352 35677888874 4444443333321 2234
Q ss_pred eEEEEEEeCCCC
Q 020508 273 IIEQMVERVSHR 284 (325)
Q Consensus 273 Ii~Q~~~~I~~~ 284 (325)
.+....+-+.|.
T Consensus 270 L~~~~nviltPh 281 (307)
T 1wwk_A 270 LTKFDNVVLTPH 281 (307)
T ss_dssp GGGCTTEEECSS
T ss_pred HHhCCCEEECCc
Confidence 444444555554
No 265
>2y1e_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase, DOXP/MEP pathway; 1.65A {Mycobacterium tuberculosis} PDB: 2jcv_A* 2jcz_A* 2jd2_A 2jd1_A 2y1d_A* 2y1c_A 2y1f_A* 2y1g_A* 3ras_A* 4a03_A* 4aic_A* 2jcx_A* 2jcy_A 2jd0_A* 2c82_A
Probab=25.70 E-value=1.4e+02 Score=28.39 Aligned_cols=56 Identities=13% Similarity=0.177 Sum_probs=38.1
Q ss_pred CCceEEEEEeCC--chHHHHHHHHhhcCCCCceEEEEEe-CCCCCCCchHHHHHHHCCCCEEEec
Q 020508 127 PKYKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVIS-NHDRGPNSHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 127 ~~~ri~v~~Sg~--g~~l~~Ll~~~~~~~l~~~I~~Vvt-~~~~~~~~~~~~~a~~~gIp~~~~~ 188 (325)
.++||++|+|-. |+.--+++.+..+ .++|+++.. +++ -.-+.+.|++++-.+..+.
T Consensus 20 ~mk~i~ILGSTGSIGtqtLdVi~~~pd---~f~V~aLaa~g~n---v~~L~~q~~~f~p~~v~v~ 78 (398)
T 2y1e_A 20 GRLRVVVLGSTGSIGTQALQVIADNPD---RFEVVGLAAGGAH---LDTLLRQRAQTGVTNIAVA 78 (398)
T ss_dssp CCEEEEEESTTSHHHHHHHHHHHHCTT---TEEEEEEEECSSC---HHHHHHHHHHHCCCCEEES
T ss_pred CceEEEEEccCcHHHHHHHHHHHhCCC---ceEEEEEEecCCC---HHHHHHHHHHcCCCEEEEc
Confidence 357899999753 5555556654322 489999888 542 2357888899988877664
No 266
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1
Probab=25.55 E-value=95 Score=29.04 Aligned_cols=86 Identities=12% Similarity=0.128 Sum_probs=50.8
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhc-CC
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-NT 205 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~-~~ 205 (325)
.++|+|.+.|+ |..+...+.. . +++|+ +++.+ ...+.++++++|..+ ++ . ++ .+. ++
T Consensus 173 GktV~V~G~G~VG~~~A~~L~~--~---GakVv--v~D~~---~~~l~~~a~~~ga~~--v~----~--~~---ll~~~~ 231 (364)
T 1leh_A 173 GLAVSVQGLGNVAKALCKKLNT--E---GAKLV--VTDVN---KAAVSAAVAEEGADA--VA----P--NA---IYGVTC 231 (364)
T ss_dssp TCEEEEECCSHHHHHHHHHHHH--T---TCEEE--EECSC---HHHHHHHHHHHCCEE--CC----G--GG---TTTCCC
T ss_pred cCEEEEECchHHHHHHHHHHHH--C---CCEEE--EEcCC---HHHHHHHHHHcCCEE--EC----h--HH---HhccCC
Confidence 46888877665 4444443332 2 46654 66653 234667888876432 22 1 11 233 78
Q ss_pred CEEEEeccccccChhHHhhcCCCEEEEcCC
Q 020508 206 DFLVLARYMQILSGKFLRSYGKDVINIHHG 235 (325)
Q Consensus 206 Dliv~~g~~~il~~~~l~~~~~~~iNiHps 235 (325)
|+++.+.-...|..+.++..+..+ -+..+
T Consensus 232 DIvip~a~~~~I~~~~~~~lg~~i-V~e~A 260 (364)
T 1leh_A 232 DIFAPCALGAVLNDFTIPQLKAKV-IAGSA 260 (364)
T ss_dssp SEEEECSCSCCBSTTHHHHCCCSE-ECCSC
T ss_pred cEeeccchHHHhCHHHHHhCCCcE-EEeCC
Confidence 999998877788888777765433 24444
No 267
>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*
Probab=25.26 E-value=2.4e+02 Score=25.87 Aligned_cols=96 Identities=15% Similarity=0.167 Sum_probs=53.6
Q ss_pred CceEEEEEeCC-ch-HHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHC----CCCEEEecCCCChhHHHHHHH
Q 020508 128 KYKVAVLASKQ-EH-CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERH----GIPYHYLCAKENEREEELLEL 201 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~-~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~----gIp~~~~~~~~~~~~~~~~~~ 201 (325)
.+|++|+++|. +. .+..++.. . +.+-+.| .+++ .....++++++ |+++.... +..+.
T Consensus 129 ~~~v~iIGaG~~a~~~a~al~~~-~----~~~~V~V-~~r~---~~~a~~la~~~~~~~g~~~~~~~--------~~~ea 191 (350)
T 1x7d_A 129 ARKMALIGNGAQSEFQALAFHKH-L----GIEEIVA-YDTD---PLATAKLIANLKEYSGLTIRRAS--------SVAEA 191 (350)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHH-S----CCCEEEE-ECSS---HHHHHHHHHHHTTCTTCEEEECS--------SHHHH
T ss_pred CCeEEEECCcHHHHHHHHHHHHh-C----CCcEEEE-EcCC---HHHHHHHHHHHHhccCceEEEeC--------CHHHH
Confidence 46999999886 33 23444332 1 2233344 4553 23456666664 77664332 12344
Q ss_pred hcCCCEEEEecccc----ccChhHHhhcCCCEEEEcCCCCCCCCC
Q 020508 202 VQNTDFLVLARYMQ----ILSGKFLRSYGKDVINIHHGLLPSFKG 242 (325)
Q Consensus 202 l~~~Dliv~~g~~~----il~~~~l~~~~~~~iNiHpslLP~yRG 242 (325)
++++|+|+++--.. +++.+.+. ++..++.-.+.-|.-|=
T Consensus 192 v~~aDiVi~aTps~~~~pvl~~~~l~--~G~~V~~vgs~~p~~~E 234 (350)
T 1x7d_A 192 VKGVDIITTVTADKAYATIITPDMLE--PGMHLNAVGGDCPGKTE 234 (350)
T ss_dssp HTTCSEEEECCCCSSEEEEECGGGCC--TTCEEEECSCCBTTBEE
T ss_pred HhcCCEEEEeccCCCCCceecHHHcC--CCCEEEECCCCCCCcee
Confidence 55799999986542 44443332 45678877777776433
No 268
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}
Probab=25.16 E-value=2e+02 Score=25.81 Aligned_cols=92 Identities=8% Similarity=-0.001 Sum_probs=48.6
Q ss_pred CCceEEEEEeCC-ch-HHHHHHHHhhcCCCCceEEEEEeCCCCCCC-----------------------------chHHH
Q 020508 127 PKYKVAVLASKQ-EH-CLVDFLYGWQEGKLPVEITCVISNHDRGPN-----------------------------SHVIR 175 (325)
Q Consensus 127 ~~~ri~v~~Sg~-g~-~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~-----------------------------~~~~~ 175 (325)
+++||++++.|. |. .....+.. .+ +.++++|+....+..+ .+...
T Consensus 24 ~~~rvgiiG~G~ig~~~~~~~l~~--~~--~~~lvav~d~~~~~~g~~~~~~~~~ll~~~~~vD~V~i~tp~~~H~~~~~ 99 (330)
T 4ew6_A 24 SPINLAIVGVGKIVRDQHLPSIAK--NA--NFKLVATASRHGTVEGVNSYTTIEAMLDAEPSIDAVSLCMPPQYRYEAAY 99 (330)
T ss_dssp CCEEEEEECCSHHHHHTHHHHHHH--CT--TEEEEEEECSSCCCTTSEEESSHHHHHHHCTTCCEEEECSCHHHHHHHHH
T ss_pred CCceEEEEecCHHHHHHHHHHHHh--CC--CeEEEEEEeCChhhcCCCccCCHHHHHhCCCCCCEEEEeCCcHHHHHHHH
Confidence 358999988775 32 22222222 12 4788888764432211 12355
Q ss_pred HHHHCCCCEEEecCCCChhH---HHHHHHhcCCCEEEEeccccccChhHHh
Q 020508 176 FLERHGIPYHYLCAKENERE---EELLELVQNTDFLVLARYMQILSGKFLR 223 (325)
Q Consensus 176 ~a~~~gIp~~~~~~~~~~~~---~~~~~~l~~~Dliv~~g~~~il~~~~l~ 223 (325)
.|-++|.+++. .+....+. .++.+..++..+.+..+|.+...+.+..
T Consensus 100 ~al~aGkhVl~-EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~ 149 (330)
T 4ew6_A 100 KALVAGKHVFL-EKPPGATLSEVADLEALANKQGASLFASWHSRYAPAVEA 149 (330)
T ss_dssp HHHHTTCEEEE-CSSSCSSHHHHHHHHHHHHHHTCCEEECCGGGGSTTHHH
T ss_pred HHHHcCCcEEE-eCCCCCCHHHHHHHHHHHHhcCCeEEEEehhhccHHHHH
Confidence 56677777763 32221122 2444444455667777887776665543
No 269
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}
Probab=25.08 E-value=74 Score=28.66 Aligned_cols=66 Identities=14% Similarity=0.079 Sum_probs=35.5
Q ss_pred CCceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCC
Q 020508 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (325)
Q Consensus 127 ~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 205 (325)
..+||+|++.|. |..+...+.. . +++|. +.+++ ..-.+.+.+.|+.+. . ...+.++++
T Consensus 30 ~~~~I~iIG~G~mG~~~a~~l~~--~---G~~V~--~~dr~----~~~~~~l~~~g~~~~--~--------~~~e~~~~a 88 (320)
T 4dll_A 30 YARKITFLGTGSMGLPMARRLCE--A---GYALQ--VWNRT----PARAASLAALGATIH--E--------QARAAARDA 88 (320)
T ss_dssp CCSEEEEECCTTTHHHHHHHHHH--T---TCEEE--EECSC----HHHHHHHHTTTCEEE--S--------SHHHHHTTC
T ss_pred CCCEEEEECccHHHHHHHHHHHh--C---CCeEE--EEcCC----HHHHHHHHHCCCEee--C--------CHHHHHhcC
Confidence 357999999886 6666554432 2 35644 33443 122333344476432 2 122344578
Q ss_pred CEEEEecc
Q 020508 206 DFLVLARY 213 (325)
Q Consensus 206 Dliv~~g~ 213 (325)
|+++++--
T Consensus 89 DvVi~~vp 96 (320)
T 4dll_A 89 DIVVSMLE 96 (320)
T ss_dssp SEEEECCS
T ss_pred CEEEEECC
Confidence 88888743
No 270
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=25.05 E-value=2.5e+02 Score=25.14 Aligned_cols=56 Identities=13% Similarity=-0.060 Sum_probs=36.9
Q ss_pred chHHHHHHHCCCCE--------EEecCCCChhHHHHHHHhcCCCEEEEeccccccChhHHhhcCCC
Q 020508 171 SHVIRFLERHGIPY--------HYLCAKENEREEELLELVQNTDFLVLARYMQILSGKFLRSYGKD 228 (325)
Q Consensus 171 ~~~~~~a~~~gIp~--------~~~~~~~~~~~~~~~~~l~~~Dliv~~g~~~il~~~~l~~~~~~ 228 (325)
..+.++++++|++- ..+.. ....+++.+.+..+|++|+.+...=++-.++++...|
T Consensus 234 ~~~~~~~~~~~l~~~v~~l~~vv~~~g--~~~~~~~~~~~~~adv~v~pS~~E~~~~~~lEAma~G 297 (413)
T 3oy2_A 234 SIALRELVASGVDNVFTHLNKIMINRT--VLTDERVDMMYNACDVIVNCSSGEGFGLCSAEGAVLG 297 (413)
T ss_dssp HHHHHHHHHHTCSCHHHHHTTEEEECS--CCCHHHHHHHHHHCSEEEECCSCCSSCHHHHHHHTTT
T ss_pred HHHHHHHHHcCcccccccccceeeccC--cCCHHHHHHHHHhCCEEEeCCCcCCCCcHHHHHHHcC
Confidence 56788888899982 33331 1234577788888999998766555555666665544
No 271
>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}
Probab=24.88 E-value=45 Score=29.39 Aligned_cols=20 Identities=10% Similarity=0.041 Sum_probs=13.6
Q ss_pred CCceEEEEEeCC-chHHHHHH
Q 020508 127 PKYKVAVLASKQ-EHCLVDFL 146 (325)
Q Consensus 127 ~~~ri~v~~Sg~-g~~l~~Ll 146 (325)
+++||+|++.|. |..+...+
T Consensus 3 ~~~~i~iiG~G~~G~~~a~~l 23 (301)
T 3cky_A 3 KSIKIGFIGLGAMGKPMAINL 23 (301)
T ss_dssp -CCEEEEECCCTTHHHHHHHH
T ss_pred CCCEEEEECccHHHHHHHHHH
Confidence 467999999886 66554433
No 272
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=24.87 E-value=3.3e+02 Score=25.14 Aligned_cols=105 Identities=20% Similarity=0.211 Sum_probs=53.2
Q ss_pred CceEEEEEeCCc---hHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCC-CEEEec-C-C-CChhH-----
Q 020508 128 KYKVAVLASKQE---HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGI-PYHYLC-A-K-ENERE----- 195 (325)
Q Consensus 128 ~~ri~v~~Sg~g---~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gI-p~~~~~-~-~-~~~~~----- 195 (325)
|+||++++ |.- ..+..|+.++++...++++..++|-... .-..+..+.+|| |-+.+. . . .+...
T Consensus 27 ~~kI~~v~-Gtr~~~~~~a~li~~l~~~~~~~~~~~~~tG~h~---~m~~~~~~~~~i~~~~~l~v~~~~~~~~~~~~~~ 102 (403)
T 3ot5_A 27 KIKVMSIF-GTRPEAIKMAPLVLALEKEPETFESTVVITAQHR---EMLDQVLEIFDIKPDIDLDIMKKGQTLAEITSRV 102 (403)
T ss_dssp CEEEEEEE-CSHHHHHHHHHHHHHHHTCTTTEEEEEEECC--------CHHHHHHTTCCCSEECCCCC-CCCHHHHHHHH
T ss_pred cceEEEEE-ecChhHHHHHHHHHHHHhCCCCCcEEEEEecCcH---HHHHHHHHhcCCCCCcccccCCCCCCHHHHHHHH
Confidence 45887665 432 3456677777653113676667775431 122444578998 423333 1 1 11111
Q ss_pred -HHHHHHhc--CCCEEEEeccc-cccChhHHh-hcCCCEEEEcCCC
Q 020508 196 -EELLELVQ--NTDFLVLARYM-QILSGKFLR-SYGKDVINIHHGL 236 (325)
Q Consensus 196 -~~~~~~l~--~~Dliv~~g~~-~il~~~~l~-~~~~~~iNiHpsl 236 (325)
.++.+.++ +||++++.|.. ..++..+.. ..+..++.+|.++
T Consensus 103 ~~~l~~~l~~~kPD~Vi~~gd~~~~l~~~laA~~~~IPv~h~~agl 148 (403)
T 3ot5_A 103 MNGINEVIAAENPDIVLVHGDTTTSFAAGLATFYQQKMLGHVEAGL 148 (403)
T ss_dssp HHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHHHTTCEEEEESCCC
T ss_pred HHHHHHHHHHcCCCEEEEECCchhHHHHHHHHHHhCCCEEEEECCc
Confidence 13344444 89999998742 233322222 2344578888765
No 273
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}
Probab=24.72 E-value=1.1e+02 Score=27.44 Aligned_cols=68 Identities=4% Similarity=-0.053 Sum_probs=0.0
Q ss_pred CCCceEEEEEe-CCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHh--
Q 020508 126 DPKYKVAVLAS-KQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELV-- 202 (325)
Q Consensus 126 ~~~~ri~v~~S-g~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l-- 202 (325)
.+|+|+++++. |.-. ...+..++.. +.++++|+...+.. ...+++++.+-.+-+ +.+++
T Consensus 1 g~mirvgiIG~gG~i~--~~h~~~l~~~--~~~lvav~d~~~~~-----~~~~~~~~~~~~~~~---------~~~ll~~ 62 (318)
T 3oa2_A 1 GHMKNFALIGAAGYIA--PRHMRAIKDT--GNCLVSAYDINDSV-----GIIDSISPQSEFFTE---------FEFFLDH 62 (318)
T ss_dssp --CCEEEEETTTSSSH--HHHHHHHHHT--TCEEEEEECSSCCC-----GGGGGTCTTCEEESS---------HHHHHHH
T ss_pred CCceEEEEECCCcHHH--HHHHHHHHhC--CCEEEEEEcCCHHH-----HHHHhhCCCCcEECC---------HHHHHHh
Q ss_pred --------c-CCCEEEEe
Q 020508 203 --------Q-NTDFLVLA 211 (325)
Q Consensus 203 --------~-~~Dliv~~ 211 (325)
. ++|+++++
T Consensus 63 ~~~l~~~~~~~vD~V~I~ 80 (318)
T 3oa2_A 63 ASNLKRDSATALDYVSIC 80 (318)
T ss_dssp HHHHTTSTTTSCCEEEEC
T ss_pred hhhhhhccCCCCcEEEEC
No 274
>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*
Probab=24.42 E-value=3.9e+02 Score=25.67 Aligned_cols=64 Identities=5% Similarity=0.105 Sum_probs=36.1
Q ss_pred CChHHHHHHHHhhhhhhcccceeeeecCCCCCceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHH
Q 020508 97 WPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIR 175 (325)
Q Consensus 97 ~~~~~L~~~l~~l~~~l~~~~~~~~~~~~~~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~ 175 (325)
.....|...|++.++. .+++||++++.|. |+.+ +..+.. ..+.++++|+.... ....+
T Consensus 5 ~~~~~l~~~l~~r~~~-------------~k~IRVGIIGaG~iG~~~---~~~l~~-~~~veLvAV~D~~~----era~~ 63 (446)
T 3upl_A 5 VALVGLARDLAARAET-------------GKPIRIGLIGAGEMGTDI---VTQVAR-MQGIEVGALSARRL----PNTFK 63 (446)
T ss_dssp SCCCHHHHHHHHHHHT-------------TCCEEEEEECCSHHHHHH---HHHHTT-SSSEEEEEEECSST----HHHHH
T ss_pred cchHHHHHHHHHHHhc-------------CCceEEEEECChHHHHHH---HHHHhh-CCCcEEEEEEeCCH----HHHHH
Confidence 3445566666664432 2578999999875 4332 333322 12578888775432 34455
Q ss_pred HHHHC-C
Q 020508 176 FLERH-G 181 (325)
Q Consensus 176 ~a~~~-g 181 (325)
.++++ |
T Consensus 64 ~a~~~yG 70 (446)
T 3upl_A 64 AIRTAYG 70 (446)
T ss_dssp HHHHHHS
T ss_pred HHHHhcC
Confidence 56654 6
No 275
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=24.36 E-value=82 Score=28.56 Aligned_cols=75 Identities=9% Similarity=0.023 Sum_probs=44.8
Q ss_pred HHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhH---HHHHHHhcCCCEEEEecccccc
Q 020508 141 CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENERE---EELLELVQNTDFLVLARYMQIL 217 (325)
Q Consensus 141 ~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~---~~~~~~l~~~Dliv~~g~~~il 217 (325)
.+++||+. ++ .++|.|.|.+. ...+....|-++|.+++. .+....+. +++++..++..+.+.++|.+..
T Consensus 85 d~~ell~~---~~--iDaV~IatP~~--~H~~~a~~al~aGkhVl~-EKPla~~~~ea~~l~~~a~~~g~~l~vg~~~R~ 156 (393)
T 4fb5_A 85 DWRALIAD---PE--VDVVSVTTPNQ--FHAEMAIAALEAGKHVWC-EKPMAPAYADAERMLATAERSGKVAALGYNYIQ 156 (393)
T ss_dssp CHHHHHHC---TT--CCEEEECSCGG--GHHHHHHHHHHTTCEEEE-CSCSCSSHHHHHHHHHHHHHSSSCEEECCGGGG
T ss_pred CHHHHhcC---CC--CcEEEECCChH--HHHHHHHHHHhcCCeEEE-ccCCcccHHHHHHhhhhHHhcCCcccccccccc
Confidence 36677653 32 45555554332 245677788888999874 32222222 3455554567788888888888
Q ss_pred ChhHHh
Q 020508 218 SGKFLR 223 (325)
Q Consensus 218 ~~~~l~ 223 (325)
.+.+..
T Consensus 157 ~p~~~~ 162 (393)
T 4fb5_A 157 NPVMRH 162 (393)
T ss_dssp CHHHHH
T ss_pred ChHHHH
Confidence 776654
No 276
>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}
Probab=23.99 E-value=1.1e+02 Score=29.18 Aligned_cols=163 Identities=13% Similarity=0.130 Sum_probs=72.9
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCC---------CCC---chHHHHHHHCCCCEEEecCCCChh
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDR---------GPN---SHVIRFLERHGIPYHYLCAKENER 194 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~---------~~~---~~~~~~a~~~gIp~~~~~~~~~~~ 194 (325)
.+||+|-++|+ |+.+..+|.. . +++|++| ++.+. +.+ ..+.++.++.| .+..++......
T Consensus 212 g~~vaVqG~GnVG~~~a~~L~~--~---GakvVav-sD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g-~i~~~~~a~~i~ 284 (421)
T 2yfq_A 212 DAKIAVQGFGNVGTFTVKNIER--Q---GGKVCAI-AEWDRNEGNYALYNENGIDFKELLAYKEANK-TLIGFPGAERIT 284 (421)
T ss_dssp GSCEEEECCSHHHHHHHHHHHH--T---TCCEEEC-CBCCSSSCSBCCBCSSCCCHHHHHHHHHHHC-C-----------
T ss_pred CCEEEEECcCHHHHHHHHHHHH--C---CCEEEEE-EecCCCccceEEECCCCCCHHHHHHHHHhcC-CcccCCCceEeC
Confidence 36888855554 3444444432 2 4677654 33331 011 33556665555 222222100001
Q ss_pred HHHHHHHhc-CCCEEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhCCcEeEEEEEEecC-CCCCCC
Q 020508 195 EEELLELVQ-NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTE-ELDAGP 272 (325)
Q Consensus 195 ~~~~~~~l~-~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvh~v~~-~~D~G~ 272 (325)
.+++ +. ++|+.+-+.....|..+-....+.++| +=.+..|- .|-...++. +-|+. ++.. -.-+|-
T Consensus 285 ~~~~---~~~~~DIliP~A~~n~i~~~~A~~l~ak~V-vEgAN~P~----t~ea~~il~---~~GI~--~~Pd~~aNaGG 351 (421)
T 2yfq_A 285 DEEF---WTKEYDIIVPAALENVITGERAKTINAKLV-CEAANGPT----TPEGDKVLT---ERGIN--LTPDILTNSGG 351 (421)
T ss_dssp -------------CEEECSCSSCSCHHHHTTCCCSEE-ECCSSSCS----CHHHHHHHH---HHTCE--EECHHHHTTHH
T ss_pred ccch---hcCCccEEEEcCCcCcCCcccHHHcCCeEE-EeCCcccc----CHHHHHHHH---HCCCE--EEChHHHhCCC
Confidence 1233 33 899999999999999888777754444 45555553 233333332 12322 2211 122232
Q ss_pred eEEEEEEeC-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020508 273 IIEQMVERV-----SHRDNLRTFVQKSEDVEKQCLAKAIKSYCE 311 (325)
Q Consensus 273 Ii~Q~~~~I-----~~~dt~~~l~~r~~~~~~~ll~~al~~i~~ 311 (325)
++... +.. ....|.+++.+|+.+.-...+.++++.-.+
T Consensus 352 V~vS~-~E~~qN~~~~~w~~e~V~~~l~~~m~~~~~~v~~~A~~ 394 (421)
T 2yfq_A 352 VLVSY-YEWVQNQYGYYWTEAEVEEKQEADMMKAIKGVFAVADE 394 (421)
T ss_dssp HHHHH-HHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEE-EEEEecCccCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22110 110 123567778888776655666666655444
No 277
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=23.81 E-value=1e+02 Score=25.90 Aligned_cols=54 Identities=4% Similarity=0.010 Sum_probs=33.7
Q ss_pred eEEEEEeCCc--hHHHHHHHHhhcCCCCceEEEEEeCCCCCC---CchHHHHHHHCCCCEEEec
Q 020508 130 KVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP---NSHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 130 ri~v~~Sg~g--~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~---~~~~~~~a~~~gIp~~~~~ 188 (325)
||+|-.||.. +.|-.|+.... .++.+|..++.-.. ...+.++|+++|||++.+.
T Consensus 46 ~v~Va~SGGkDS~vLL~ll~~~~-----~~v~~v~vd~g~~~~e~~~~v~~~~~~~gi~~~v~~ 104 (215)
T 1sur_A 46 EYVLSSSFGIQAAVSLHLVNQIR-----PDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYR 104 (215)
T ss_dssp EEEEECCCCTTHHHHHHHHHHHS-----TTCEEEEEECSCBCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEecCCHHHHHHHHHHHHhC-----CCCeEEEeeCCCCCHHHHHHHHHHHHHhCCcEEEEe
Confidence 7888888853 45555554432 24555555553211 1357889999999998775
No 278
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.81 E-value=61 Score=24.16 Aligned_cols=17 Identities=12% Similarity=0.235 Sum_probs=13.9
Q ss_pred chHHHHHHHCCCCEEEe
Q 020508 171 SHVIRFLERHGIPYHYL 187 (325)
Q Consensus 171 ~~~~~~a~~~gIp~~~~ 187 (325)
..+..+|+.++||++.+
T Consensus 47 ~~i~~~c~~~~ip~~~~ 63 (99)
T 3j21_Z 47 DDIYYYAKLSDIPVYEF 63 (99)
T ss_dssp HHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHcCCCEEEe
Confidence 34678899999998766
No 279
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=23.75 E-value=1.2e+02 Score=27.16 Aligned_cols=76 Identities=11% Similarity=0.208 Sum_probs=40.5
Q ss_pred CceEEEEEeCCc-hH-HHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCC
Q 020508 128 KYKVAVLASKQE-HC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (325)
Q Consensus 128 ~~ri~v~~Sg~g-~~-l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 205 (325)
..+|.|+..|.+ .+ ...+++++... .++. ||+.+..+....+.+.+++.. .+...+.. +++.+++..+
T Consensus 157 ~~~ILv~~GG~d~~~l~~~vl~~L~~~---~~i~-vv~G~~~~~~~~l~~~~~~~~-~v~v~~~~-----~~m~~~m~~a 226 (282)
T 3hbm_A 157 KYDFFICMGGTDIKNLSLQIASELPKT---KIIS-IATSSSNPNLKKLQKFAKLHN-NIRLFIDH-----ENIAKLMNES 226 (282)
T ss_dssp CEEEEEECCSCCTTCHHHHHHHHSCTT---SCEE-EEECTTCTTHHHHHHHHHTCS-SEEEEESC-----SCHHHHHHTE
T ss_pred CCeEEEEECCCchhhHHHHHHHHhhcC---CCEE-EEECCCchHHHHHHHHHhhCC-CEEEEeCH-----HHHHHHHHHC
Confidence 457777655543 33 34566665432 2443 455443222234556665543 44444411 2366677789
Q ss_pred CEEEEecc
Q 020508 206 DFLVLARY 213 (325)
Q Consensus 206 Dliv~~g~ 213 (325)
|++|+.|=
T Consensus 227 DlvI~~gG 234 (282)
T 3hbm_A 227 NKLIISAS 234 (282)
T ss_dssp EEEEEESS
T ss_pred CEEEECCc
Confidence 99999763
No 280
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=23.69 E-value=64 Score=25.37 Aligned_cols=32 Identities=22% Similarity=0.395 Sum_probs=22.1
Q ss_pred eEEEEEeCCCCCCCchHHHHHHHCCCCEEEec
Q 020508 157 EITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 157 ~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~ 188 (325)
++.++|-......+..+.+.|+++|||+...+
T Consensus 74 ~~~~iIlt~g~~~~~~i~~~A~~~~ipvl~t~ 105 (139)
T 2ioj_A 74 NVRCLILTGNLEPVQLVLTKAEERGVPVILTG 105 (139)
T ss_dssp TEEEEEEETTCCCCHHHHHHHHHHTCCEEECS
T ss_pred CCcEEEEcCCCCCCHHHHHHHHHCCCeEEEEC
Confidence 35554433333346778999999999998765
No 281
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=23.60 E-value=1.4e+02 Score=23.13 Aligned_cols=54 Identities=17% Similarity=0.244 Sum_probs=29.9
Q ss_pred HHHHHHhhcCCCCceEEEEEeCCCCCC-CchHHHHHHHCCCCEEEecCCCChhHHHHHHHhc
Q 020508 143 VDFLYGWQEGKLPVEITCVISNHDRGP-NSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 203 (325)
Q Consensus 143 ~~Ll~~~~~~~l~~~I~~Vvt~~~~~~-~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 203 (325)
...+++++.+. ..++.+-.+-+... -..+..+|+++|||++++.+ -.++-.++.
T Consensus 34 ~~v~kal~~gk--a~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~v~s-----k~eLG~a~G 88 (124)
T 2fc3_A 34 NETTKAVERGL--AKLVVIAEDVDPPEIVMHLPLLCDEKKIPYVYVPS-----KKRLGEAAG 88 (124)
T ss_dssp HHHHHHHHTTC--CSEEEEETTCSSGGGTTTHHHHHHHTTCCEEEESC-----HHHHHHHTT
T ss_pred HHHHHHHHcCC--ceEEEEcCCCChHHHHHHHHHHHHHcCCCEEEECC-----HHHHHHHhC
Confidence 33444445554 44443333322111 25578899999999987762 135555554
No 282
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=23.30 E-value=66 Score=24.13 Aligned_cols=28 Identities=14% Similarity=0.116 Sum_probs=19.4
Q ss_pred chHHHHHHHCCCCEEEecCCCChhHHHHHHHhc
Q 020508 171 SHVIRFLERHGIPYHYLCAKENEREEELLELVQ 203 (325)
Q Consensus 171 ~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 203 (325)
..+..+|+.++||++.+.+ -.++=..+.
T Consensus 51 ~~i~~~c~~~~vp~~~~~s-----~~eLG~A~G 78 (101)
T 3v7q_A 51 KKVTDKCNYYKVPYKKVES-----RAVLGRSIG 78 (101)
T ss_dssp HHHHHHHHHTTCCEEEESC-----HHHHHHHTT
T ss_pred hhhcccccccCCCeeeech-----HHHHHhhhC
Confidence 3467789999999998752 135555554
No 283
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=23.26 E-value=1.1e+02 Score=23.64 Aligned_cols=28 Identities=32% Similarity=0.623 Sum_probs=20.1
Q ss_pred chHHHHHHHCCCCEEEecCCCChhHHHHHHHhc
Q 020508 171 SHVIRFLERHGIPYHYLCAKENEREEELLELVQ 203 (325)
Q Consensus 171 ~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 203 (325)
..+..+|+++|||+++++++ .++=.++.
T Consensus 62 ~~l~~lc~~~~VP~~~v~sk-----~eLG~a~G 89 (120)
T 1xbi_A 62 AHLPYLCEEKGIPYAYVASK-----QDLGKAAG 89 (120)
T ss_dssp TTHHHHHHHHTCCEEEESCH-----HHHHHHTT
T ss_pred HHHHHHHHhcCCCEEEeCCH-----HHHHHHhC
Confidence 56889999999999877621 35555554
No 284
>1f2v_A COBH, precorrin-8X methylmutase; alpha-beta WIND, doubly wound sheet, isomerase; 2.10A {Pseudomonas denitrificans} SCOP: c.23.17.1 PDB: 1i1h_A*
Probab=23.14 E-value=84 Score=27.48 Aligned_cols=129 Identities=12% Similarity=0.092 Sum_probs=64.9
Q ss_pred CcchHHHHHHHHHhcCCeEe-EeeeeccCCC--C-eEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcccceeeeecCCCC
Q 020508 52 EVGIVAKLSECIASRGGNIL-AADVFVPEKK--N-VFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDP 127 (325)
Q Consensus 52 rpGIVa~Vt~~La~~giNI~-~l~~~~~~~~--g-~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~~~ 127 (325)
.+|-|..--..|.+ |..|+ |.++--.... . .|-..+.-.+.+ .+..+ ++++.|..|+.+.+.-..+
T Consensus 66 s~~av~ag~~AL~~-Ga~IvtDv~Mv~aGI~~~~l~~g~~v~C~i~d--~~v~~-------~Ak~~g~TRsaaa~~~~~~ 135 (219)
T 1f2v_A 66 SPDFVSSARAALKA-GAPILCDAEMVAHGVTRARLPAGNEVICTLRD--PRTPA-------LAAEIGNTRSAAALKLWSE 135 (219)
T ss_dssp CTTHHHHHHHHHHT-TCCEEESSHHHHHHSCGGGCSSCCCEEECTTS--THHHH-------HHHHHTSCHHHHGGGGGHH
T ss_pred ChHHHHHHHHHHHc-CCCEEEecHHHHHHhCHHHHhcCCeEEEECCC--cchHH-------HHHHcCCCHHHHHHHHHHH
Confidence 36778877777766 45554 4444311000 0 122222222222 11222 2334555555444332211
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCC-chHHHHHHHC--CCCEEEec-CCCC
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPN-SHVIRFLERH--GIPYHYLC-AKEN 192 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~-~~~~~~a~~~--gIp~~~~~-~~~~ 192 (325)
...=+||+-|+ .+.|..|++.++++.. +..+||.-|----+ ..-++...+. +||+.... ++..
T Consensus 136 ~~~~aIvaIGNAPTAL~~Lleli~~g~~--~PalVIG~PVGFVgaaESKe~L~~~~~~vP~I~~~GrkGG 203 (219)
T 1f2v_A 136 RLAGSVVAIGNAPTALFFLLEMLRDGAP--KPAAILGMPVGFVGAAESKDALAENSYGVPFAIVRGRLGG 203 (219)
T ss_dssp HHTTCEEEECSCHHHHHHHHHHHHTTCC--CCSEEEECCCSSSSHHHHHHHHHHCCTTCCEEEECTTCCC
T ss_pred HcCCcEEEEeCcHHHHHHHHHHHHcCCC--CCCEEEEeCCCccCHHHHHHHHHhCCCCCCEEEEeCCCCC
Confidence 11115666776 5899999998877753 45566665531111 2335555666 89998776 5443
No 285
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=23.03 E-value=3.3e+02 Score=24.01 Aligned_cols=103 Identities=13% Similarity=0.092 Sum_probs=49.1
Q ss_pred ceEEEEEeCCc---hHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCE-EEecC-C--CChh------H
Q 020508 129 YKVAVLASKQE---HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPY-HYLCA-K--ENER------E 195 (325)
Q Consensus 129 ~ri~v~~Sg~g---~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~-~~~~~-~--~~~~------~ 195 (325)
|||+++. |.. ..+..|++.+++.. ++++..+++... .....+..+.+|+++ ..++- . .+.. -
T Consensus 1 mkIl~v~-~~~~~~~~~~~l~~~L~~~g-~~~~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (384)
T 1vgv_A 1 MKVLTVF-GTRPEAIKMAPLVHALAKDP-FFEAKVCVTAQH---REMLDQVLKLFSIVPDYDLNIMQPGQGLTEITCRIL 75 (384)
T ss_dssp CEEEEEE-CSHHHHHHHHHHHHHHHHST-TCEEEEEECCSS---GGGGHHHHHHHTCCCSEECCCCSTTSCHHHHHHHHH
T ss_pred CeEEEEe-cccHHHHHHHHHHHHHHhCC-CCceEEEEcCCC---HHHHHHHHHHcCCCCCcceecCCCCccHHHHHHHHH
Confidence 5787754 432 23455677665432 124444454332 122344556678765 33331 1 0110 1
Q ss_pred HHHHHHhc--CCCEEEEecc-ccccChhHHh-hcCCCEEEEcCCC
Q 020508 196 EELLELVQ--NTDFLVLARY-MQILSGKFLR-SYGKDVINIHHGL 236 (325)
Q Consensus 196 ~~~~~~l~--~~Dliv~~g~-~~il~~~~l~-~~~~~~iNiHpsl 236 (325)
..+.+.++ +||++++.+. ...++..+.. ..+..++..+.++
T Consensus 76 ~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~a~~~~ip~v~~~~~~ 120 (384)
T 1vgv_A 76 EGLKPILAEFKPDVVLVHGDTTTTLATSLAAFYQRIPVGHVEAGL 120 (384)
T ss_dssp HHHHHHHHHHCCSEEEEETTCHHHHHHHHHHHTTTCCEEEESCCC
T ss_pred HHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEeccc
Confidence 23444554 8999999763 2223322322 2234566665554
No 286
>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A
Probab=23.01 E-value=1.8e+02 Score=27.75 Aligned_cols=102 Identities=19% Similarity=0.195 Sum_probs=55.7
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCC----CCC---CchHHHHHHHCCCCEEEecCCCChhHHHHH
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHD----RGP---NSHVIRFLERHGIPYHYLCAKENEREEELL 199 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~----~~~---~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~ 199 (325)
.+|++|.++|+ |+.+..+|.. +.+++|++|. ++. ++. ...+.++.++.| .+..++.......++
T Consensus 209 g~~vaVqG~GnVG~~~a~~L~e----~~GakvVavs-D~~G~i~dp~Gld~~~l~~~~~~~g-~l~~y~~a~~~~~~e-- 280 (415)
T 2tmg_A 209 KATVAVQGFGNVGQFAALLISQ----ELGSKVVAVS-DSRGGIYNPEGFDVEELIRYKKEHG-TVVTYPKGERITNEE-- 280 (415)
T ss_dssp TCEEEEECCSHHHHHHHHHHHH----TTCCEEEEEE-CSSCEEECTTCCCHHHHHHHHHHSS-CSTTCSSSEEECHHH--
T ss_pred CCEEEEECCcHHHHHHHHHHHH----hcCCEEEEEE-eCCCeEECCCCCCHHHHHHHHHhhC-CcccCCCceEcCchh--
Confidence 46898866654 4454444432 1257777654 331 001 134666776654 111111000011123
Q ss_pred HHhc-CCCEEEEeccccccChhHHhhcCCCEEEEcCCCCCC
Q 020508 200 ELVQ-NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPS 239 (325)
Q Consensus 200 ~~l~-~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~ 239 (325)
.+. ++|+++-++....|..+-....+-++| .=.+.+|-
T Consensus 281 -il~~~~DIliP~A~~n~i~~~~a~~l~ak~V-~EgAN~p~ 319 (415)
T 2tmg_A 281 -LLELDVDILVPAALEGAIHAGNAERIKAKAV-VEGANGPT 319 (415)
T ss_dssp -HTTCSCSEEEECSSTTSBCHHHHTTCCCSEE-ECCSSSCB
T ss_pred -hhcCCCcEEEecCCcCccCcccHHHcCCeEE-EeCCCccc
Confidence 344 899999999999999888777765544 55666663
No 287
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=22.81 E-value=1.2e+02 Score=23.83 Aligned_cols=18 Identities=17% Similarity=0.159 Sum_probs=15.7
Q ss_pred chHHHHHHHCCCCEEEec
Q 020508 171 SHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 171 ~~~~~~a~~~gIp~~~~~ 188 (325)
..+..+|+++|||++.++
T Consensus 57 ~~i~~lc~~~~Ip~~~v~ 74 (126)
T 2xzm_U 57 KLVKALCAKNEIKYVSVP 74 (126)
T ss_dssp HHHHHHHHHTTCCEEEES
T ss_pred HHHHHHHHHhCCCEEEEC
Confidence 457899999999999887
No 288
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=22.78 E-value=1.4e+02 Score=23.06 Aligned_cols=28 Identities=14% Similarity=0.464 Sum_probs=19.9
Q ss_pred chHHHHHHHCCCCEEEecCCCChhHHHHHHHhc
Q 020508 171 SHVIRFLERHGIPYHYLCAKENEREEELLELVQ 203 (325)
Q Consensus 171 ~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 203 (325)
..+..+|+++|||++++++ -.++-.++.
T Consensus 62 ~~l~~lc~~~~Vp~~~~~s-----k~eLG~a~G 89 (120)
T 1vq8_F 62 MHIPELADEKGVPFIFVEQ-----QDDLGHAAG 89 (120)
T ss_dssp TTHHHHHHTTCCCEEEESC-----HHHHHHHTT
T ss_pred HHHHHHHHhcCCCEEEECC-----HHHHHHHhC
Confidence 5578899999999987762 135555554
No 289
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=22.64 E-value=1.5e+02 Score=22.15 Aligned_cols=60 Identities=7% Similarity=0.023 Sum_probs=37.8
Q ss_pred CcchHHHHHHHHHhcCCeEeEeeeecc---------CCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcccceeee
Q 020508 52 EVGIVAKLSECIASRGGNILAADVFVP---------EKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVR 121 (325)
Q Consensus 52 rpGIVa~Vt~~La~~giNI~~l~~~~~---------~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~~~~~ 121 (325)
...++.++.+.+.+.|+.|.+++.-+. ...|.| ..+.++.|+ ...++|.. .|.++...+|
T Consensus 19 ~~~~~~~~~~~i~~~gg~i~~~e~wG~R~LAY~I~k~~~G~Y-~l~~f~a~~--~~i~eler-------~lr~~~~VlR 87 (101)
T 1cqm_A 19 LALEKEIIQRALENYGARVEKVAILGLRRLAYPIAKDPQGYF-LWYQVEMPE--DRVNDLAR-------ELRIRDNVRR 87 (101)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEEETTEEEEEE-EEEEEEECH--HHHHHHHH-------HHHTSTTEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEeecCcccccCcCCCCEEEE-EEEEEEeCh--HHHHHHHH-------HhcCCcceEE
Confidence 457899999999999999998876541 123444 356666654 12344443 4555555555
No 290
>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*
Probab=22.61 E-value=1.5e+02 Score=27.85 Aligned_cols=92 Identities=14% Similarity=0.158 Sum_probs=48.2
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCC-----C-----hhH-
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE-----N-----ERE- 195 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~-----~-----~~~- 195 (325)
..||+|++.|. |.....++.. ++++|. ++++. ....+.++++|..+..++... . ..+
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~~-----~Ga~V~--v~D~~----~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~ 240 (401)
T 1x13_A 172 PAKVMVIGAGVAGLAAIGAANS-----LGAIVR--AFDTR----PEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDA 240 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH-----TTCEEE--EECSC----GGGHHHHHHTTCEECCC--------CCHHHHHHSHH
T ss_pred CCEEEEECCCHHHHHHHHHHHH-----CCCEEE--EEcCC----HHHHHHHHHcCCEEEEecccccccccccchhhccHH
Confidence 56899988764 4444444433 245532 34442 123455677886543211000 0 000
Q ss_pred ------HHHHHHhcCCCEEEEec------cccccChhHHhhcCCCEE
Q 020508 196 ------EELLELVQNTDFLVLAR------YMQILSGKFLRSYGKDVI 230 (325)
Q Consensus 196 ------~~~~~~l~~~Dliv~~g------~~~il~~~~l~~~~~~~i 230 (325)
+.+.+.+.++|+++.+. -..++..+.++..+.+.+
T Consensus 241 ~~~~~~~~l~e~~~~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~v 287 (401)
T 1x13_A 241 FIKAEMELFAAQAKEVDIIVTTALIPGKPAPKLITREMVDSMKAGSV 287 (401)
T ss_dssp HHHHHHHHHHHHHHHCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCE
T ss_pred HHHHHHHHHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCcE
Confidence 12444445799999883 226788888887765433
No 291
>3trg_A Acylphosphatase; fatty acid and phospholipid metabolism, hydrolase; 1.60A {Coxiella burnetii}
Probab=22.50 E-value=1.9e+02 Score=21.56 Aligned_cols=59 Identities=14% Similarity=0.063 Sum_probs=43.3
Q ss_pred HHHHHHHhhhhhhcccceeeeecCCCCCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEe
Q 020508 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (325)
Q Consensus 101 ~L~~~l~~l~~~l~~~~~~~~~~~~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt 163 (325)
-+|.-...+|.+||+.-|..-.++ - +|-+.+.|....+..+++.++.+...+.|..|-.
T Consensus 26 GFR~~v~~~A~~lgL~G~VrN~~d--G--~Vei~~eG~~~~l~~f~~~l~~gPp~A~V~~v~~ 84 (98)
T 3trg_A 26 FFRESVRKKAEELQLTGWVKNLSH--G--DVELVACGERDSIMILTEWLWEGPPQAAVSNVNW 84 (98)
T ss_dssp CHHHHHHHHHHHTTCEEEEEECTT--S--CEEEEEEEEHHHHHHHHHHTTTCSTTCEEEEEEE
T ss_pred CccHHHHHHHHHcCCeEEEEECCC--C--EEEEEEEECHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 377888889999999988433332 2 6777778888889999999877544577776643
No 292
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A*
Probab=22.38 E-value=2e+02 Score=22.48 Aligned_cols=81 Identities=10% Similarity=0.048 Sum_probs=45.1
Q ss_pred hHHHHHHHHhhhhhhcccceeeeecCCCCCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHH
Q 020508 99 REQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLE 178 (325)
Q Consensus 99 ~~~L~~~l~~l~~~l~~~~~~~~~~~~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~ 178 (325)
...|...|...|.++|+.- . . ++ .+.. .+.....++..++.+++..-..+++.+|...+......++.+|+
T Consensus 30 ~~~F~~~L~~~~~~~Gm~i---~--~--~p-~~~~-~~~~~~~v~~~~~~l~~~~~~~qlv~~ilp~~~~~Y~~iK~~~~ 100 (138)
T 3luc_A 30 LKSFTEQLRKISRDAGMPI---Q--G--QP-CFCK-YAQGADSVEPMFRHLKNTYAGLQLVVVILPGKTPVYAEVKRVGD 100 (138)
T ss_dssp HHHHHHHHHHHHHHHTCCB---C--S--SC-SEEE-ECCSGGGHHHHHHHHHHHCTTCCEEEEEECSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCC---C--C--CC-eeee-cCCcHHHHHHHHHHHHhcCCCCcEEEEEECCCChHHHHHHHHhc
Confidence 5778888888899998862 2 1 11 2222 23333345555555433111246666666532111244677764
Q ss_pred -HCCCCEEEec
Q 020508 179 -RHGIPYHYLC 188 (325)
Q Consensus 179 -~~gIp~~~~~ 188 (325)
++|||...+-
T Consensus 101 ~~~gv~tqcv~ 111 (138)
T 3luc_A 101 TVLGMATQCVQ 111 (138)
T ss_dssp TTSCCCEEEEE
T ss_pred cCCCcceEEeC
Confidence 7999998764
No 293
>1w2i_A Acylphosphatase; hydrolase, thermophilic, stability, amyloid; 1.5A {Pyrococcus horikoshii} SCOP: d.58.10.1 PDB: 1v3z_A 2w4d_A
Probab=22.20 E-value=1.9e+02 Score=21.14 Aligned_cols=58 Identities=14% Similarity=0.046 Sum_probs=42.2
Q ss_pred HHHHHHHhhhhhhcccceeeeecCCCCCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEE
Q 020508 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVI 162 (325)
Q Consensus 101 ~L~~~l~~l~~~l~~~~~~~~~~~~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vv 162 (325)
-+|.-...+|.+||+.-|. +..+ +- +|-+.+.|....+..+++.++.+...+.|.-|-
T Consensus 18 GFR~~v~~~A~~lgL~G~V-~N~~-dG--~Vei~~~G~~~~v~~f~~~l~~gP~~a~V~~v~ 75 (91)
T 1w2i_A 18 GFRWSMQREARKLGVNGWV-RNLP-DG--SVEAVLEGDEERVEALIGWAHQGPPLARVTRVE 75 (91)
T ss_dssp SHHHHHHHHHHHHTCEEEE-EECT-TS--CEEEEEEEEHHHHHHHHHHTTTCSTTCEEEEEE
T ss_pred CHHHHHHHHHHHcCCeEEE-EECC-CC--CEEEEEEeCHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 3778888899999999874 4322 22 677777888888999999887654447776663
No 294
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=22.13 E-value=3.7e+02 Score=22.98 Aligned_cols=107 Identities=12% Similarity=0.037 Sum_probs=57.7
Q ss_pred CCCceEEEEEeCCchHHH---HHHHHhhcCCCCceEEEEEeCCCCCCC---chHHHHHHHCCCCEEEecCCCChhHHHHH
Q 020508 126 DPKYKVAVLASKQEHCLV---DFLYGWQEGKLPVEITCVISNHDRGPN---SHVIRFLERHGIPYHYLCAKENEREEELL 199 (325)
Q Consensus 126 ~~~~ri~v~~Sg~g~~l~---~Ll~~~~~~~l~~~I~~Vvt~~~~~~~---~~~~~~a~~~gIp~~~~~~~~~~~~~~~~ 199 (325)
.+..||+|-..++..+.+ ......+. .+.++..+-...+.... ..+.+.++++|+++...-.. ....+++.
T Consensus 168 ~~~~~Ilv~~d~s~~s~~al~~a~~la~~--~~~~l~ll~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~-g~~~~~I~ 244 (294)
T 3loq_A 168 SLFDRVLVAYDFSKWADRALEYAKFVVKK--TGGELHIIHVSEDGDKTADLRVMEEVIGAEGIEVHVHIES-GTPHKAIL 244 (294)
T ss_dssp CTTSEEEEECCSSHHHHHHHHHHHHHHHH--HTCEEEEEEECSSSCCHHHHHHHHHHHHHTTCCEEEEEEC-SCHHHHHH
T ss_pred ccCCEEEEEECCCHHHHHHHHHHHHHhhh--cCCEEEEEEEccCchHHHHHHHHHHHHHHcCCcEEEEEec-CCHHHHHH
Confidence 345788887766643322 22222221 13444444332221111 23566778899997543222 23345677
Q ss_pred HHhc--CCCEEEEecccccc---------ChhHHhhcCCCEEEEcCC
Q 020508 200 ELVQ--NTDFLVLARYMQIL---------SGKFLRSYGKDVINIHHG 235 (325)
Q Consensus 200 ~~l~--~~Dliv~~g~~~il---------~~~~l~~~~~~~iNiHps 235 (325)
+..+ ++|++|+..+++-- ...++...+..++-+|+.
T Consensus 245 ~~a~~~~~dLlV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pvLvv~~~ 291 (294)
T 3loq_A 245 AKREEINATTIFMGSRGAGSVMTMILGSTSESVIRRSPVPVFVCKRG 291 (294)
T ss_dssp HHHHHTTCSEEEEECCCCSCHHHHHHHCHHHHHHHHCSSCEEEECSC
T ss_pred HHHHhcCcCEEEEeCCCCCCccceeeCcHHHHHHhcCCCCEEEECCC
Confidence 7776 89999998875421 234555556666666654
No 295
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}
Probab=22.06 E-value=1.1e+02 Score=28.17 Aligned_cols=21 Identities=24% Similarity=0.181 Sum_probs=15.6
Q ss_pred CCceEEEEEeCC-chHHHHHHH
Q 020508 127 PKYKVAVLASKQ-EHCLVDFLY 147 (325)
Q Consensus 127 ~~~ri~v~~Sg~-g~~l~~Ll~ 147 (325)
.++||+|+++|. |+.+...+.
T Consensus 28 ~~mkI~VIGaG~mG~alA~~La 49 (356)
T 3k96_A 28 FKHPIAILGAGSWGTALALVLA 49 (356)
T ss_dssp CCSCEEEECCSHHHHHHHHHHH
T ss_pred cCCeEEEECccHHHHHHHHHHH
Confidence 357999999986 677666554
No 296
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=22.01 E-value=1.6e+02 Score=24.05 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=11.5
Q ss_pred HHHHHHhcCCCEEEEec
Q 020508 196 EELLELVQNTDFLVLAR 212 (325)
Q Consensus 196 ~~~~~~l~~~Dliv~~g 212 (325)
+++.+.++++|.+|.+.
T Consensus 59 ~~~~~~~~~~d~vi~~a 75 (227)
T 3dhn_A 59 DEVCEVCKGADAVISAF 75 (227)
T ss_dssp HHHHHHHTTCSEEEECC
T ss_pred HHHHHHhcCCCEEEEeC
Confidence 45666666888877664
No 297
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}
Probab=21.95 E-value=2.6e+02 Score=24.05 Aligned_cols=57 Identities=14% Similarity=0.037 Sum_probs=35.5
Q ss_pred ceEEEEEeCCc-hH-HHHHHHHhhcCCCCceEEEEEeCCCCCC-CchHHHHHHHCCCCEEEec
Q 020508 129 YKVAVLASKQE-HC-LVDFLYGWQEGKLPVEITCVISNHDRGP-NSHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 129 ~ri~v~~Sg~g-~~-l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~-~~~~~~~a~~~gIp~~~~~ 188 (325)
.++++..||.- |. +..++.... + +.++.+|..+..... ...+.++|+++|+|++.++
T Consensus 23 ~~vvv~lSGGiDSs~~~~l~~~~~-g--~~~v~av~~~~~~~~~~~~a~~~a~~lgi~~~~i~ 82 (257)
T 2e18_A 23 NGVVIGISGGVDSATVAYLATKAL-G--KEKVLGLIMPYFENKDVEDAKLVAEKLGIGYKVIN 82 (257)
T ss_dssp TCEEEECCSSHHHHHHHHHHHHHH-C--GGGEEEEECCSSCSTHHHHHHHHHHHHTCEEEECC
T ss_pred CcEEEEecCCHHHHHHHHHHHHhc-C--CCcEEEEEeCCCCchHHHHHHHHHHHhCCCEEEEE
Confidence 58999999862 43 333443321 1 146777766653211 1347888999999998776
No 298
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}
Probab=21.75 E-value=1.3e+02 Score=23.36 Aligned_cols=49 Identities=20% Similarity=0.314 Sum_probs=27.3
Q ss_pred EEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCC-CchHHHHHHHCCCCEEEec
Q 020508 134 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP-NSHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 134 ~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~-~~~~~~~a~~~gIp~~~~~ 188 (325)
+++|... .+++++.+. +..+.+-.+-+... -..+..+|+++|||+.++.
T Consensus 32 lv~G~~~----v~kai~~gk--a~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~ 81 (122)
T 3o85_A 32 IKRGANE----ALKQVNRGK--AELVIIAADADPIEIVLHLPLACEDKGVPYVFIG 81 (122)
T ss_dssp EEESHHH----HHHHHHTTC--CSEEEEETTCSSGGGGTTHHHHHHTTTCCEEEES
T ss_pred EeEcHHH----HHHHHHcCC--ceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEEC
Confidence 4455433 444445554 44443333322111 2457889999999998776
No 299
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=21.70 E-value=3.7e+02 Score=25.50 Aligned_cols=178 Identities=10% Similarity=0.001 Sum_probs=92.2
Q ss_pred EEEEEEcC-CCcchHHHHHHHHHhcCCeEeEee---------------------eecc---C-CCCeEEEEE--------
Q 020508 43 GIHVFHCP-DEVGIVAKLSECIASRGGNILAAD---------------------VFVP---E-KKNVFYSRS-------- 88 (325)
Q Consensus 43 ~~ltv~g~-DrpGIVa~Vt~~La~~giNI~~l~---------------------~~~~---~-~~g~F~~~~-------- 88 (325)
..+.+.|. +-+|=+.++.+.|.+.|+.+.-+- ++.+ . ....+.+.+
T Consensus 170 ~~VNilg~~~~~~d~~eik~lL~~~Gi~v~~l~d~s~~ld~~~~~~~~~~~~gg~~~~ei~~~~~A~~niv~~~~~~~~~ 249 (458)
T 1mio_B 170 GKINVIPGFVGPADMREIKRLFEAMDIPYIMFPDTSGVLDGPTTGEYKMYPEGGTKIEDLKDTGNSDLTLSLGSYASDLG 249 (458)
T ss_dssp SCEEEECCSCCHHHHHHHHHHHHHHTCCEEESSCCTTTSSCCCCSSCCSSCSCSBCHHHHHTTSSCSEEEEESHHHHHHH
T ss_pred CcEEEECCCCCHHHHHHHHHHHHHcCCcEEEeccccccccCcccCccceeCCCCCcHHHHHhhccCCEEEEEchhhHHHH
Confidence 34566653 448889999999999999998531 1110 1 111222211
Q ss_pred -----------EEEeCCCCCChHHHHHHHHhhhhhhcccce-ee-----e----ec---CCCCCceEEEEEeCCchHHHH
Q 020508 89 -----------EFIFDPIKWPREQMDEDFFKLSKMFNAMRS-VV-----R----VP---DIDPKYKVAVLASKQEHCLVD 144 (325)
Q Consensus 89 -----------~v~~p~~~~~~~~L~~~l~~l~~~l~~~~~-~~-----~----~~---~~~~~~ri~v~~Sg~g~~l~~ 144 (325)
.+..|. +...+.-.+-|.++++-+|.+.. .+ | +. ..-..+|+++++.+ .-...
T Consensus 250 A~~Le~~~GiP~~~~~~-p~G~~~T~~~l~~la~~~g~~~~~~i~~e~~~~~~~~~d~~~~l~gkrv~i~~~~--~~~~~ 326 (458)
T 1mio_B 250 AKTLEKKCKVPFKTLRT-PIGVSATDEFIMALSEATGKEVPASIEEERGQLIDLMIDAQQYLQGKKVALLGDP--DEIIA 326 (458)
T ss_dssp HHHHHHHSCCCEEEECC-CBHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHTHHHHTTCEEEEEECH--HHHHH
T ss_pred HHHHHHHhCCCEEecCC-CcCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCc--hHHHH
Confidence 122222 34456666666677666665410 00 0 00 00124689887743 33333
Q ss_pred HHHHhhcCCCCceEEEEEeCCCCCC-CchHHHHHHHCC-CCEEEecCCCChhHHHHHHHhc--CCCEEEEeccccccChh
Q 020508 145 FLYGWQEGKLPVEITCVISNHDRGP-NSHVIRFLERHG-IPYHYLCAKENEREEELLELVQ--NTDFLVLARYMQILSGK 220 (325)
Q Consensus 145 Ll~~~~~~~l~~~I~~Vvt~~~~~~-~~~~~~~a~~~g-Ip~~~~~~~~~~~~~~~~~~l~--~~Dliv~~g~~~il~~~ 220 (325)
+...+. +++.+++.|++...... ...+.++.++.+ .....+.. ....++.+.++ +||+++.-.+.+-
T Consensus 327 l~~~L~--elG~~vv~v~~~~~~~~~~~~~~~ll~~~~~~~~~v~~~---~d~~~l~~~i~~~~pDl~ig~~~~~~---- 397 (458)
T 1mio_B 327 LSKFII--ELGAIPKYVVTGTPGMKFQKEIDAMLAEAGIEGSKVKVE---GDFFDVHQWIKNEGVDLLISNTYGKF---- 397 (458)
T ss_dssp HHHHHH--TTTCEEEEEEESSCCHHHHHHHHHHHHTTTCCSCEEEES---CBHHHHHHHHHHSCCSEEEESGGGHH----
T ss_pred HHHHHH--HCCCEEEEEEeCCCCHHHHHHHHHHHHhcCCCCCEEEEC---CCHHHHHHHHHhcCCCEEEeCcchHH----
Confidence 333333 46889999888664211 112344455554 32222221 12345667775 8999997666432
Q ss_pred HHhhcCCCEEEE
Q 020508 221 FLRSYGKDVINI 232 (325)
Q Consensus 221 ~l~~~~~~~iNi 232 (325)
+..+....++.+
T Consensus 398 ~a~k~gip~~~~ 409 (458)
T 1mio_B 398 IAREENIPFVRF 409 (458)
T ss_dssp HHHHHTCCEEEC
T ss_pred HHHHcCCCEEEe
Confidence 333445556654
No 300
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure, structural genomics, NPPSFA; HET: MSE NAD; 2.12A {Aquifex aeolicus VF5} PDB: 3kb6_A*
Probab=21.65 E-value=2.9e+02 Score=25.18 Aligned_cols=102 Identities=16% Similarity=0.310 Sum_probs=60.1
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCC
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 206 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 206 (325)
-++|+|++-|. |..+...+... +.+|.+ .++.. ... ..+.|+.+. + +.+.++++|
T Consensus 141 g~tvgIiG~G~IG~~vA~~l~~~-----G~~V~~--~d~~~---~~~---~~~~g~~~~--~---------l~ell~~aD 196 (334)
T 2pi1_A 141 RLTLGVIGTGRIGSRVAMYGLAF-----GMKVLC--YDVVK---RED---LKEKGCVYT--S---------LDELLKESD 196 (334)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHT-----TCEEEE--ECSSC---CHH---HHHTTCEEC--C---------HHHHHHHCS
T ss_pred CceEEEECcCHHHHHHHHHHHHC-----cCEEEE--ECCCc---chh---hHhcCceec--C---------HHHHHhhCC
Confidence 46899988775 66665555442 456543 23321 111 224565432 1 334455789
Q ss_pred EEEEec-----cccccChhHHhhcCCCEEEEcCCCCCCCCCC----cHHHHHHHhCCcEeEE
Q 020508 207 FLVLAR-----YMQILSGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQAFDAGVKLIGA 259 (325)
Q Consensus 207 liv~~g-----~~~il~~~~l~~~~~~~iNiHpslLP~yRG~----~pi~~ai~~G~~~~Gv 259 (325)
++++.- -..++..+.++..+.+.+=+--| ||. ..+..|+.+|. ..|+
T Consensus 197 vV~l~~P~t~~t~~li~~~~l~~mk~gailIN~a-----Rg~~vd~~aL~~aL~~g~-i~gA 252 (334)
T 2pi1_A 197 VISLHVPYTKETHHMINEERISLMKDGVYLINTA-----RGKVVDTDALYRAYQRGK-FSGL 252 (334)
T ss_dssp EEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECS-----CGGGBCHHHHHHHHHTTC-EEEE
T ss_pred EEEEeCCCChHHHHhhCHHHHhhCCCCcEEEECC-----CCcccCHHHHHHHHHhCC-ceEE
Confidence 999873 34588999999988775555544 554 45677777774 4443
No 301
>3e7d_A COBH, precorrin-8X methylmutase; ssgcid, decode, braba00006A, structural genomics, seattle ST genomics center for infectious disease; 1.80A {Brucella abortus} SCOP: c.23.17.1
Probab=21.47 E-value=96 Score=26.94 Aligned_cols=59 Identities=14% Similarity=0.140 Sum_probs=36.3
Q ss_pred EEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCC-chHHHHHHH--CCCCEEEec-CCCC
Q 020508 132 AVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPN-SHVIRFLER--HGIPYHYLC-AKEN 192 (325)
Q Consensus 132 ~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~-~~~~~~a~~--~gIp~~~~~-~~~~ 192 (325)
++|+-|+ .+.|..|++.+++|. .+..+||.-|----+ ..-++...+ .+||+.... ++..
T Consensus 133 ~IvaIGNAPTAL~~Lleli~~g~--~~PalVIG~PVGFV~aaESKe~L~~~~~~vP~I~~~GrkGG 196 (212)
T 3e7d_A 133 SIVAIGNAPTALFRLFELLDAGA--PKPALIIGMPVGFVGAAESKDELAANSRGVPYVIVRGRRGG 196 (212)
T ss_dssp CEEEESSCHHHHHHHHHHHHTTC--CCCSEEEECCCSSSSHHHHHHHHHHCCTTCCEEEECSSCCC
T ss_pred cEEEEECcHHHHHHHHHHHHcCC--CCcceEEEeCCCccChHHHHHHHHhcCCCCCEEEEecCCCC
Confidence 4566666 589999999888775 344566665531111 223454445 699998776 5543
No 302
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*
Probab=21.31 E-value=3.8e+02 Score=24.38 Aligned_cols=149 Identities=15% Similarity=0.216 Sum_probs=77.3
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCC
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 206 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~D 206 (325)
.+||+|++.|. |..+...+.. .+.+|.+ .++.... . .|+.. .. ++.+.++++|
T Consensus 164 g~~vgIIG~G~iG~~vA~~l~~-----~G~~V~~--~dr~~~~-~--------~g~~~--~~--------~l~ell~~aD 217 (333)
T 3ba1_A 164 GKRVGIIGLGRIGLAVAERAEA-----FDCPISY--FSRSKKP-N--------TNYTY--YG--------SVVELASNSD 217 (333)
T ss_dssp TCCEEEECCSHHHHHHHHHHHT-----TTCCEEE--ECSSCCT-T--------CCSEE--ES--------CHHHHHHTCS
T ss_pred CCEEEEECCCHHHHHHHHHHHH-----CCCEEEE--ECCCchh-c--------cCcee--cC--------CHHHHHhcCC
Confidence 46899988775 5555554432 1356543 3332111 0 13321 21 1334455899
Q ss_pred EEEEec-----cccccChhHHhhcCCCEEEEcCCCCCCCCCC----cHHHHHHHhCCcEeEEEEEEecCCCCC-CCeEEE
Q 020508 207 FLVLAR-----YMQILSGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQAFDAGVKLIGATSHFVTEELDA-GPIIEQ 276 (325)
Q Consensus 207 liv~~g-----~~~il~~~~l~~~~~~~iNiHpslLP~yRG~----~pi~~ai~~G~~~~GvTvh~v~~~~D~-G~Ii~Q 276 (325)
+++++- ...++..+.++..+.+.+=+.-| ||. ..+..++.+| ...|+-+++...+-.. -+.+.-
T Consensus 218 vVil~vP~~~~t~~li~~~~l~~mk~gailIn~s-----rG~~vd~~aL~~aL~~g-~i~ga~lDv~~~EP~~~~~L~~~ 291 (333)
T 3ba1_A 218 ILVVACPLTPETTHIINREVIDALGPKGVLINIG-----RGPHVDEPELVSALVEG-RLGGAGLDVFEREPEVPEKLFGL 291 (333)
T ss_dssp EEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECS-----CGGGBCHHHHHHHHHHT-SSCEEEESCCTTTTCCCGGGGGC
T ss_pred EEEEecCCChHHHHHhhHHHHhcCCCCCEEEECC-----CCchhCHHHHHHHHHcC-CCeEEEEecCCCCCCCcchhhcC
Confidence 999874 34677777888776554334433 553 3577778877 4556666666644211 233332
Q ss_pred EEEeCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHhCc
Q 020508 277 MVERVSHR---DNLRTFVQKSEDVEKQCLAKAIKSYCELR 313 (325)
Q Consensus 277 ~~~~I~~~---dt~~~l~~r~~~~~~~ll~~al~~i~~g~ 313 (325)
..+-+.|. .|.+.. ++ ..+++.+.+..+.+|+
T Consensus 292 ~nviltPH~~~~t~e~~-~~----~~~~~~~nl~~~~~g~ 326 (333)
T 3ba1_A 292 ENVVLLPHVGSGTVETR-KV----MADLVVGNLEAHFSGK 326 (333)
T ss_dssp TTEEECSSCTTCSHHHH-HH----HHHHHHHHHHHHHHTC
T ss_pred CCEEECCcCCCCCHHHH-HH----HHHHHHHHHHHHHcCC
Confidence 33333343 333332 22 3344555666666665
No 303
>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A
Probab=21.28 E-value=3.9e+02 Score=22.84 Aligned_cols=32 Identities=3% Similarity=-0.108 Sum_probs=19.6
Q ss_pred HHCCCCEEEecCCCChhHHHHHHHhcCCCEEEEec
Q 020508 178 ERHGIPYHYLCAKENEREEELLELVQNTDFLVLAR 212 (325)
Q Consensus 178 ~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dliv~~g 212 (325)
...|+.+...+ . ...+.+.+.++++|.++.+.
T Consensus 49 ~~~~~~~~~~D--~-~d~~~l~~~~~~~d~vi~~a 80 (299)
T 2wm3_A 49 RLQGAEVVQGD--Q-DDQVIMELALNGAYATFIVT 80 (299)
T ss_dssp HHTTCEEEECC--T-TCHHHHHHHHTTCSEEEECC
T ss_pred HHCCCEEEEec--C-CCHHHHHHHHhcCCEEEEeC
Confidence 34677776554 1 12345666677899888753
No 304
>1b0z_A Protein (phosphoglucose isomerase); autocrinefactor, neuroleukin, crystallography motility; 2.30A {Geobacillus stearothermophilus} SCOP: c.80.1.2 PDB: 1c7q_A* 1c7r_A* 2pgi_A
Probab=21.13 E-value=88 Score=30.21 Aligned_cols=27 Identities=15% Similarity=0.037 Sum_probs=21.4
Q ss_pred CCCcHHHHHHHhCCcEeEEEEEEecCC
Q 020508 241 KGGKPAKQAFDAGVKLIGATSHFVTEE 267 (325)
Q Consensus 241 RG~~pi~~ai~~G~~~~GvTvh~v~~~ 267 (325)
.|-|...+-|..|.+..-+|+..+.+.
T Consensus 303 ~dqHs~~Qli~qG~~~~~~~fi~~~~~ 329 (445)
T 1b0z_A 303 TDLHSMGQYVQEGRRNLIETVLHVKKP 329 (445)
T ss_dssp GGGGTTHHHHHHSCSCEEEEEEEEEEC
T ss_pred cchhhhHHHhhcCCcceeeEEEEecCC
Confidence 445677888999999888999888753
No 305
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*
Probab=21.03 E-value=69 Score=27.03 Aligned_cols=67 Identities=16% Similarity=0.171 Sum_probs=32.7
Q ss_pred CCceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCC
Q 020508 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (325)
Q Consensus 127 ~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~ 205 (325)
.++||+|++.|. |..+...+.. . +++|.. + +++ .... +...+.|+.+. + ..+.++++
T Consensus 27 ~~~~I~iiG~G~~G~~la~~l~~--~---g~~V~~-~-~r~---~~~~-~~~~~~g~~~~--~---------~~~~~~~~ 84 (215)
T 2vns_A 27 EAPKVGILGSGDFARSLATRLVG--S---GFKVVV-G-SRN---PKRT-ARLFPSAAQVT--F---------QEEAVSSP 84 (215)
T ss_dssp --CCEEEECCSHHHHHHHHHHHH--T---TCCEEE-E-ESS---HHHH-HHHSBTTSEEE--E---------HHHHTTSC
T ss_pred CCCEEEEEccCHHHHHHHHHHHH--C---CCEEEE-E-eCC---HHHH-HHHHHcCCcee--c---------HHHHHhCC
Confidence 357999998765 4444433322 2 346543 3 332 1112 22233365542 1 12334589
Q ss_pred CEEEEecccc
Q 020508 206 DFLVLARYMQ 215 (325)
Q Consensus 206 Dliv~~g~~~ 215 (325)
|+++++--..
T Consensus 85 DvVi~av~~~ 94 (215)
T 2vns_A 85 EVIFVAVFRE 94 (215)
T ss_dssp SEEEECSCGG
T ss_pred CEEEECCChH
Confidence 9999876443
No 306
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Probab=20.96 E-value=2.2e+02 Score=25.30 Aligned_cols=76 Identities=14% Similarity=0.107 Sum_probs=38.1
Q ss_pred CCceEEEEE-eCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhc-
Q 020508 127 PKYKVAVLA-SKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ- 203 (325)
Q Consensus 127 ~~~ri~v~~-Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~- 203 (325)
+..+|+|.+ +|. |.....+++. . +++|+++..+++ -.++++++|.....-.+. ....+++.+...
T Consensus 148 ~g~~vlV~Ga~g~iG~~~~~~a~~--~---Ga~Vi~~~~~~~------~~~~~~~~ga~~~~~~~~-~~~~~~~~~~~~~ 215 (334)
T 3qwb_A 148 KGDYVLLFAAAGGVGLILNQLLKM--K---GAHTIAVASTDE------KLKIAKEYGAEYLINASK-EDILRQVLKFTNG 215 (334)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHH--T---TCEEEEEESSHH------HHHHHHHTTCSEEEETTT-SCHHHHHHHHTTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHH--C---CCEEEEEeCCHH------HHHHHHHcCCcEEEeCCC-chHHHHHHHHhCC
Confidence 345776655 221 3333333332 2 467766554332 256889999776432222 112234444433
Q ss_pred -CCCEEEEeccc
Q 020508 204 -NTDFLVLARYM 214 (325)
Q Consensus 204 -~~Dliv~~g~~ 214 (325)
.+|+++-+.-.
T Consensus 216 ~g~D~vid~~g~ 227 (334)
T 3qwb_A 216 KGVDASFDSVGK 227 (334)
T ss_dssp SCEEEEEECCGG
T ss_pred CCceEEEECCCh
Confidence 58888866433
No 307
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2
Probab=20.70 E-value=2.9e+02 Score=23.64 Aligned_cols=32 Identities=19% Similarity=0.205 Sum_probs=19.6
Q ss_pred HHCCCCEEEecCCCChhHHHHHHHhcCCCEEEEec
Q 020508 178 ERHGIPYHYLCAKENEREEELLELVQNTDFLVLAR 212 (325)
Q Consensus 178 ~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dliv~~g 212 (325)
...|+.+...+ . ...+.+.+.++++|.+|.+.
T Consensus 54 ~~~~v~~v~~D--~-~d~~~l~~~~~~~d~vi~~a 85 (308)
T 1qyc_A 54 KASGANIVHGS--I-DDHASLVEAVKNVDVVISTV 85 (308)
T ss_dssp HTTTCEEECCC--T-TCHHHHHHHHHTCSEEEECC
T ss_pred HhCCCEEEEec--c-CCHHHHHHHHcCCCEEEECC
Confidence 34677766443 1 12345666777899888764
No 308
>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A
Probab=20.65 E-value=1.8e+02 Score=28.02 Aligned_cols=101 Identities=12% Similarity=0.125 Sum_probs=54.6
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCC----CCC---CchHHHHHHHCCCCEEEecCCCChhHHHHH
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHD----RGP---NSHVIRFLERHGIPYHYLCAKENEREEELL 199 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~----~~~---~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~ 199 (325)
.+||+|.++|+ |+.+..+|.. . +.+|++|. +.. ++. -..+.++.++.| .+..++.......+++
T Consensus 235 g~~vaVqGfGnVG~~~a~~L~e--~---GakvVavs-D~~G~i~dp~Gld~~~l~~~~~~~g-~i~~y~~a~~i~~~ei- 306 (440)
T 3aog_A 235 GARVAIQGFGNVGNAAARAFHD--H---GARVVAVQ-DHTGTVYNEAGIDPYDLLRHVQEFG-GVRGYPKAEPLPAADF- 306 (440)
T ss_dssp TCEEEEECCSHHHHHHHHHHHH--T---TCEEEEEE-CSSCEEECTTCCCHHHHHHHHHHTS-SSTTCTTSEECCHHHH-
T ss_pred CCEEEEeccCHHHHHHHHHHHH--C---CCEEEEEE-cCCcEEECCCCCCHHHHHHHHHhcC-CcccCCCceEcCchhh-
Confidence 46898865554 3444444432 1 46776654 331 001 134666666665 2111110000111233
Q ss_pred HHhc-CCCEEEEeccccccChhHHhhcCCCEEEEcCCCCCC
Q 020508 200 ELVQ-NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPS 239 (325)
Q Consensus 200 ~~l~-~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~ 239 (325)
+. ++|+++-++....|..+-....+-++| .=.+..|-
T Consensus 307 --~~~~~DIlvPcA~~n~i~~~na~~l~ak~V-vEgAN~p~ 344 (440)
T 3aog_A 307 --WGLPVEFLVPAALEKQITEQNAWRIRARIV-AEGANGPT 344 (440)
T ss_dssp --TTCCCSEEEECSSSSCBCTTTGGGCCCSEE-ECCSSSCB
T ss_pred --hcCCCcEEEecCCcCccchhhHHHcCCcEE-EecCcccc
Confidence 44 899999999988998888777765444 55555553
No 309
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=20.58 E-value=64 Score=24.13 Aligned_cols=27 Identities=11% Similarity=0.081 Sum_probs=18.9
Q ss_pred hHHHHHHHCCCCEEEecCCCChhHHHHHHHhc
Q 020508 172 HVIRFLERHGIPYHYLCAKENEREEELLELVQ 203 (325)
Q Consensus 172 ~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~ 203 (325)
.+..+|+.++||++.+.+ -.++=.++.
T Consensus 51 ~i~~~c~~~~ip~~~~~s-----~~eLG~a~G 77 (101)
T 3on1_A 51 KLLDKCGSYQIPVKVVGN-----RQMLGRAIG 77 (101)
T ss_dssp HHHHHHHHHTCCEEEESC-----HHHHHHHTT
T ss_pred HHHHHHHHcCCCEEEeCC-----HHHHHHHhC
Confidence 467789999999987652 135555554
No 310
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=20.56 E-value=60 Score=29.40 Aligned_cols=73 Identities=14% Similarity=0.077 Sum_probs=37.2
Q ss_pred CceEEEEEeCC-chHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHH-HhcCC
Q 020508 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLE-LVQNT 205 (325)
Q Consensus 128 ~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~-~l~~~ 205 (325)
.+||+|++.|. |..+...+.. .| ...+|. +.+++ ..-.+.+.+.|+......+ ..+ .++++
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~--~G-~~~~V~--~~dr~----~~~~~~a~~~G~~~~~~~~--------~~~~~~~~a 95 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRR--SG-FKGKIY--GYDIN----PESISKAVDLGIIDEGTTS--------IAKVEDFSP 95 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHH--TT-CCSEEE--EECSC----HHHHHHHHHTTSCSEEESC--------TTGGGGGCC
T ss_pred CCEEEEEeeCHHHHHHHHHHHh--CC-CCCEEE--EEECC----HHHHHHHHHCCCcchhcCC--------HHHHhhccC
Confidence 37999998775 5555443332 22 112543 33442 2335667778874222221 112 23467
Q ss_pred CEEEEecccccc
Q 020508 206 DFLVLARYMQIL 217 (325)
Q Consensus 206 Dliv~~g~~~il 217 (325)
|+++++--...+
T Consensus 96 DvVilavp~~~~ 107 (314)
T 3ggo_A 96 DFVMLSSPVRTF 107 (314)
T ss_dssp SEEEECSCGGGH
T ss_pred CEEEEeCCHHHH
Confidence 888777554433
No 311
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=20.45 E-value=1.5e+02 Score=26.53 Aligned_cols=33 Identities=12% Similarity=0.106 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCCC-CchHHHHHHHCCCCEEEec
Q 020508 156 VEITCVISNHDRGP-NSHVIRFLERHGIPYHYLC 188 (325)
Q Consensus 156 ~~I~~Vvt~~~~~~-~~~~~~~a~~~gIp~~~~~ 188 (325)
-+.+.+++.+...+ +....+...+.|||+..+.
T Consensus 65 pDfvI~isPN~a~PGP~~ARE~l~~~~iP~IvI~ 98 (283)
T 1qv9_A 65 PDFIVYGGPNPAAPGPSKAREMLADSEYPAVIIG 98 (283)
T ss_dssp CSEEEEECSCTTSHHHHHHHHHHHTSSSCEEEEE
T ss_pred CCEEEEECCCCCCCCchHHHHHHHhCCCCEEEEc
Confidence 34566666553222 2346777888999999886
No 312
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=20.42 E-value=2.9e+02 Score=25.21 Aligned_cols=73 Identities=10% Similarity=0.118 Sum_probs=37.2
Q ss_pred EEEEEeC-CchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhcCCCEEE
Q 020508 131 VAVLASK-QEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLV 209 (325)
Q Consensus 131 i~v~~Sg-~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dliv 209 (325)
-.|+.-+ +++.+..|..+.+.|. ..+|..+=| ++...+..+.....+.|||+..+.. ..+...++++|.++
T Consensus 123 ~~ILTh~~S~tv~~~l~~A~~~gk-~~~V~v~Es-rP~~qG~~la~~L~~~gI~vtli~D------sa~~~~m~~vd~Vi 194 (315)
T 3ecs_A 123 ATILTHAYSRVVLRVLEAAVAAKK-RFSVYVTES-QPDLSGKKMAKALCHLNVPVTVVLD------AAVGYIMEKADLVI 194 (315)
T ss_dssp EEEEECSCCHHHHHHHHHHHTTTC-CEEEEEECC-TTTTHHHHHHHHHHTTTCCEEEECG------GGHHHHGGGCSEEE
T ss_pred CEEEEcCCcHHHHHHHHHHHHcCC-eEEEEEecC-CCcchHHHHHHHHHHcCCCEEEEeh------hHHHHHHHhCCEEE
Confidence 3455544 3455555555555543 344332222 2211233455556778999988761 12333444677776
Q ss_pred Ee
Q 020508 210 LA 211 (325)
Q Consensus 210 ~~ 211 (325)
+.
T Consensus 195 vG 196 (315)
T 3ecs_A 195 VG 196 (315)
T ss_dssp EE
T ss_pred EC
Confidence 64
No 313
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}
Probab=20.23 E-value=63 Score=28.43 Aligned_cols=18 Identities=11% Similarity=-0.084 Sum_probs=13.2
Q ss_pred ceEEEEEeCC-chHHHHHH
Q 020508 129 YKVAVLASKQ-EHCLVDFL 146 (325)
Q Consensus 129 ~ri~v~~Sg~-g~~l~~Ll 146 (325)
+||+|++.|. |+.+...+
T Consensus 2 ~~I~iiG~G~mG~~~a~~l 20 (287)
T 3pdu_A 2 TTYGFLGLGIMGGPMAANL 20 (287)
T ss_dssp CCEEEECCSTTHHHHHHHH
T ss_pred CeEEEEccCHHHHHHHHHH
Confidence 5899999887 66665544
No 314
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=20.16 E-value=1.1e+02 Score=29.70 Aligned_cols=195 Identities=9% Similarity=0.017 Sum_probs=102.9
Q ss_pred eEEEEEEcCC-CcchHHHHHHHHHhcCCeEe-Eeee--ecc---CCC-CeEEEEEE--------------EEeC---CCC
Q 020508 42 HGIHVFHCPD-EVGIVAKLSECIASRGGNIL-AADV--FVP---EKK-NVFYSRSE--------------FIFD---PIK 96 (325)
Q Consensus 42 ~~~ltv~g~D-rpGIVa~Vt~~La~~giNI~-~l~~--~~~---~~~-g~F~~~~~--------------v~~p---~~~ 96 (325)
+..+.+.|.- -+|=+.++.+.|.+.|+.+. ++.. +.+ .+. ..+.+.+. +.+| ...
T Consensus 203 ~~~VNiiG~~~~~gd~~eik~lL~~~Gi~v~~~~~gg~~~~el~~~~~A~~niv~~~~~~~~~A~~Le~~~GiP~i~~~p 282 (483)
T 3pdi_A 203 VHDVNLIGEYNIAGEFWHVLPLLDELGLRVLCTLAGDARYREVQTMHRAEVNMMVCSKAMLNVARKLQETYGTPWFEGSF 282 (483)
T ss_dssp CEEEEEESCCCBTTGGGGTHHHHHHHTEEEEEEETSSBCHHHHTTGGGCSEEEEESCCTTHHHHHHHHHHHCCCEEEECS
T ss_pred CCeEEEEcCCCChhHHHHHHHHHHHCCCcEEEECCCcCCHHHHHhhhcCCEEEEEchhhHHHHHHHHHHHhCCCEeecCC
Confidence 4788888863 47888999999999999986 3322 110 111 12332210 0111 013
Q ss_pred CChHHHHHHHHhhhhhhcccce------ee-----e----ecC---CCCCceEEEEEeCC-chHHHHHHHHhhcCCCCce
Q 020508 97 WPREQMDEDFFKLSKMFNAMRS------VV-----R----VPD---IDPKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVE 157 (325)
Q Consensus 97 ~~~~~L~~~l~~l~~~l~~~~~------~~-----~----~~~---~~~~~ri~v~~Sg~-g~~l~~Ll~~~~~~~l~~~ 157 (325)
...+.-.+-|.++++-+|.+.. .+ + +.+ .-..+|+++++.+. ...+..++. +++.+
T Consensus 283 ~Gi~~T~~~L~~ia~~~g~~~i~~~~e~~i~~er~~~~~al~~~~~~l~GKrv~i~~~~~~~~~l~~~L~-----ElGme 357 (483)
T 3pdi_A 283 YGITDTSQALRDFARLLDDPDLTARTEALIAREEAKVRAALEPWRARLEGKRVLLYTGGVKSWSVVSALQ-----DLGMK 357 (483)
T ss_dssp SSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHH-----HHTCE
T ss_pred CCHHHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCchHHHHHHHHH-----HCCCE
Confidence 5678888888888888875310 00 0 000 01236999876442 123333332 24788
Q ss_pred EEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCCChhHHHHHHHhc--CCCEEEEeccccccChhHHhhcCCCEEEEcCC
Q 020508 158 ITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVLARYMQILSGKFLRSYGKDVINIHHG 235 (325)
Q Consensus 158 I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~l~--~~Dliv~~g~~~il~~~~l~~~~~~~iNiHps 235 (325)
++.+.+.... ........+..+.....++ +.+..++.+.++ +|||++.-++.+.+.. +....++.+|..
T Consensus 358 vv~~gt~~~~--~~d~~~~~~~l~~~~~i~~---d~d~~el~~~i~~~~pDL~ig~~~~~~~a~----k~gIP~~~~~~~ 428 (483)
T 3pdi_A 358 VVATGTKKST--EEDKARIRELMGDDVKMLD---EGNARVLLKTVDEYQADILIAGGRNMYTAL----KGRVPFLDINQE 428 (483)
T ss_dssp EEEECBSSSC--HHHHHHHHHHSCSSCCBCC---SCSHHHHHHHHHHTTCSEEECCGGGHHHHH----HTTCCBCCCCSS
T ss_pred EEEEecCCCC--HHHHHHHHHhcCCCCEEEe---CCCHHHHHHHHHhcCCCEEEECCchhHHHH----HcCCCEEEecCc
Confidence 8887765421 1122233334443332222 112346777775 8999999887765433 233445555542
Q ss_pred -CCCC--CCCCcHHHHHH
Q 020508 236 -LLPS--FKGGKPAKQAF 250 (325)
Q Consensus 236 -lLP~--yRG~~pi~~ai 250 (325)
-.|. |+|..-+...|
T Consensus 429 ~~~p~~GY~G~~~l~~~i 446 (483)
T 3pdi_A 429 REFGYAGYDGMLELVRQL 446 (483)
T ss_dssp SSCCCCHHHHHHHHHHHH
T ss_pred cccCcchhhHHHHHHHHH
Confidence 2343 66655444433
No 315
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2
Probab=20.16 E-value=1.5e+02 Score=25.63 Aligned_cols=31 Identities=13% Similarity=0.212 Sum_probs=19.1
Q ss_pred HCCCCEEEecCCCChhHHHHHHHhcCCCEEEEec
Q 020508 179 RHGIPYHYLCAKENEREEELLELVQNTDFLVLAR 212 (325)
Q Consensus 179 ~~gIp~~~~~~~~~~~~~~~~~~l~~~Dliv~~g 212 (325)
..|+.+...+ .. ..+.+.+.++++|.++.+.
T Consensus 54 ~~~~~~~~~D--~~-d~~~l~~~~~~~d~vi~~a 84 (313)
T 1qyd_A 54 QLGAKLIEAS--LD-DHQRLVDALKQVDVVISAL 84 (313)
T ss_dssp TTTCEEECCC--SS-CHHHHHHHHTTCSEEEECC
T ss_pred hCCeEEEeCC--CC-CHHHHHHHHhCCCEEEECC
Confidence 4577665443 11 2345667777899888764
No 316
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}
Probab=20.00 E-value=2.6e+02 Score=23.97 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=20.4
Q ss_pred HHCCCCEEEecCCCChhHHHHHHHhcCCCEEEEec
Q 020508 178 ERHGIPYHYLCAKENEREEELLELVQNTDFLVLAR 212 (325)
Q Consensus 178 ~~~gIp~~~~~~~~~~~~~~~~~~l~~~Dliv~~g 212 (325)
...|+.+...+ .. ..+++.+.++++|.+|.+.
T Consensus 53 ~~~~v~~v~~D--~~-d~~~l~~~~~~~d~vi~~a 84 (307)
T 2gas_A 53 QSLGVILLEGD--IN-DHETLVKAIKQVDIVICAA 84 (307)
T ss_dssp HHTTCEEEECC--TT-CHHHHHHHHTTCSEEEECS
T ss_pred HhCCCEEEEeC--CC-CHHHHHHHHhCCCEEEECC
Confidence 35688776554 11 2345667777899888764
Done!