Query 020509
Match_columns 325
No_of_seqs 253 out of 1337
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 02:57:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020509.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020509hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2515 Acd 1-aminocyclopropan 100.0 6E-44 1.3E-48 340.8 12.3 179 64-296 4-190 (323)
2 COG0133 TrpB Tryptophan syntha 100.0 1.5E-41 3.3E-46 326.9 11.2 205 41-276 14-243 (396)
3 KOG1395 Tryptophan synthase be 100.0 2.7E-31 5.8E-36 258.8 8.8 205 43-276 83-311 (477)
4 PRK04346 tryptophan synthase s 99.9 1.2E-27 2.5E-32 236.2 13.7 208 40-277 15-247 (397)
5 PRK14045 1-aminocyclopropane-1 99.9 2E-26 4.4E-31 219.9 15.8 107 91-199 20-127 (329)
6 PLN02618 tryptophan synthase, 99.9 2E-26 4.2E-31 228.5 15.1 217 39-277 22-260 (410)
7 TIGR01274 ACC_deam 1-aminocycl 99.9 8.6E-26 1.9E-30 216.0 15.4 122 64-200 3-131 (337)
8 TIGR01275 ACC_deam_rel pyridox 99.9 1.5E-25 3.4E-30 210.7 15.7 114 89-204 4-118 (311)
9 PRK13028 tryptophan synthase s 99.9 1.4E-25 3E-30 221.9 14.2 210 38-277 17-251 (402)
10 PRK12390 1-aminocyclopropane-1 99.9 3.2E-25 6.8E-30 211.8 15.0 173 90-279 13-212 (337)
11 cd06449 ACCD Aminocyclopropane 99.9 4.1E-24 8.9E-29 201.3 14.6 108 95-202 3-119 (307)
12 PRK03910 D-cysteine desulfhydr 99.9 1.2E-23 2.5E-28 200.7 16.1 181 86-278 9-205 (331)
13 PRK13803 bifunctional phosphor 99.9 5.7E-24 1.2E-28 219.4 14.4 213 37-277 225-459 (610)
14 PRK13802 bifunctional indole-3 99.9 5.9E-23 1.3E-27 214.8 15.5 217 37-277 280-521 (695)
15 cd01561 CBS_like CBS_like: Thi 99.8 1.4E-17 3E-22 155.6 15.6 165 93-279 3-183 (291)
16 TIGR00263 trpB tryptophan synt 99.8 1.1E-17 2.4E-22 163.9 15.1 210 42-277 9-240 (385)
17 PF00291 PALP: Pyridoxal-phosp 99.7 1.8E-17 4E-22 152.7 11.9 92 102-200 19-111 (306)
18 cd00640 Trp-synth-beta_II Tryp 99.7 1.1E-16 2.5E-21 145.0 16.7 166 94-280 2-177 (244)
19 cd06446 Trp-synth_B Tryptophan 99.7 9.8E-17 2.1E-21 155.8 16.5 202 46-278 4-225 (365)
20 PRK06381 threonine synthase; V 99.7 5.7E-17 1.2E-21 153.4 13.5 165 93-280 16-190 (319)
21 PRK06721 threonine synthase; R 99.7 4.2E-16 9.1E-21 150.7 16.2 104 91-200 27-131 (352)
22 cd01563 Thr-synth_1 Threonine 99.7 6.2E-16 1.4E-20 146.2 15.9 167 86-279 16-194 (324)
23 PRK12391 tryptophan synthase s 99.7 4.8E-16 1E-20 155.2 15.8 173 91-279 76-277 (427)
24 TIGR01415 trpB_rel pyridoxal-p 99.7 8.8E-16 1.9E-20 152.9 17.0 173 91-279 67-268 (419)
25 cd06448 L-Ser-dehyd Serine deh 99.7 7.7E-16 1.7E-20 147.0 15.5 185 93-306 2-202 (316)
26 PRK10717 cysteine synthase A; 99.7 1.8E-15 3.9E-20 144.4 15.1 103 91-200 12-119 (330)
27 TIGR01136 cysKM cysteine synth 99.6 4.2E-15 9.1E-20 139.8 16.2 165 92-279 7-186 (299)
28 PRK07476 eutB threonine dehydr 99.6 1.6E-15 3.5E-20 144.6 13.5 102 92-200 19-122 (322)
29 PLN00011 cysteine synthase 99.6 2E-15 4.3E-20 144.4 13.7 101 93-200 18-124 (323)
30 cd01562 Thr-dehyd Threonine de 99.6 2.8E-15 6E-20 139.7 13.7 102 92-200 17-120 (304)
31 PRK06352 threonine synthase; V 99.6 3.8E-15 8.2E-20 144.3 15.0 105 90-200 26-131 (351)
32 PLN02556 cysteine synthase/L-3 99.6 1E-14 2.2E-19 142.9 16.2 102 91-199 58-165 (368)
33 TIGR01137 cysta_beta cystathio 99.6 1.3E-14 2.9E-19 142.6 17.1 102 92-200 11-117 (454)
34 TIGR01139 cysK cysteine syntha 99.6 8.5E-15 1.9E-19 137.5 14.0 154 104-280 18-187 (298)
35 TIGR00260 thrC threonine synth 99.6 9.8E-15 2.1E-19 138.3 13.4 173 86-279 17-198 (328)
36 COG1350 Predicted alternative 99.6 5.2E-15 1.1E-19 144.4 11.4 176 91-287 77-284 (432)
37 PRK07409 threonine synthase; V 99.6 2.6E-14 5.5E-19 138.0 14.9 109 86-200 25-134 (353)
38 TIGR01138 cysM cysteine syntha 99.6 5.1E-14 1.1E-18 132.9 16.4 102 92-200 8-114 (290)
39 PRK06110 hypothetical protein; 99.6 2.8E-14 6E-19 136.2 13.5 102 91-199 20-124 (322)
40 PRK06608 threonine dehydratase 99.6 3.6E-14 7.8E-19 137.1 13.5 102 91-199 22-126 (338)
41 PRK08246 threonine dehydratase 99.5 1.5E-13 3.2E-18 130.9 16.1 100 91-200 22-123 (310)
42 PRK08197 threonine synthase; V 99.5 1.5E-13 3.3E-18 134.7 16.2 107 86-200 73-182 (394)
43 PRK11761 cysM cysteine synthas 99.5 1.4E-13 3E-18 130.5 15.2 103 91-200 11-118 (296)
44 PRK07591 threonine synthase; V 99.5 1.8E-13 3.9E-18 135.8 15.1 106 88-200 85-192 (421)
45 PRK08206 diaminopropionate amm 99.5 6.7E-14 1.4E-18 138.1 11.3 107 91-200 43-171 (399)
46 PRK06260 threonine synthase; V 99.5 4.9E-13 1.1E-17 131.3 15.2 109 86-200 61-171 (397)
47 PRK07048 serine/threonine dehy 99.5 5.5E-13 1.2E-17 126.9 14.5 101 92-199 24-126 (321)
48 PRK05638 threonine synthase; V 99.5 1.2E-12 2.5E-17 130.4 16.1 102 90-199 64-166 (442)
49 TIGR02991 ectoine_eutB ectoine 99.4 1.4E-12 3E-17 124.7 14.6 103 91-200 18-122 (317)
50 TIGR02079 THD1 threonine dehyd 99.4 1.2E-12 2.6E-17 129.5 14.5 98 91-195 15-114 (409)
51 PRK08329 threonine synthase; V 99.4 1.8E-12 3.8E-17 125.4 15.1 97 90-200 62-159 (347)
52 PRK08198 threonine dehydratase 99.4 1.6E-12 3.6E-17 127.2 14.2 101 92-199 22-124 (404)
53 PRK06815 hypothetical protein; 99.4 2.5E-12 5.3E-17 122.6 13.6 103 91-200 19-123 (317)
54 PRK06382 threonine dehydratase 99.4 3.9E-12 8.5E-17 125.4 15.1 102 92-200 25-128 (406)
55 PRK09224 threonine dehydratase 99.4 3.6E-12 7.7E-17 129.5 15.2 102 91-199 19-122 (504)
56 TIGR01127 ilvA_1Cterm threonin 99.4 4.8E-12 1E-16 122.9 14.4 100 93-199 1-102 (380)
57 PRK12483 threonine dehydratase 99.4 1.2E-11 2.7E-16 126.6 15.7 99 91-199 36-139 (521)
58 PRK08526 threonine dehydratase 99.4 6.9E-12 1.5E-16 124.3 13.1 102 91-199 19-122 (403)
59 TIGR01124 ilvA_2Cterm threonin 99.3 1.2E-11 2.7E-16 125.7 14.6 102 91-199 16-119 (499)
60 PRK08638 threonine dehydratase 99.3 1.6E-11 3.4E-16 118.6 14.5 102 91-199 26-129 (333)
61 PLN02970 serine racemase 99.3 4E-11 8.8E-16 115.1 14.8 164 91-279 26-198 (328)
62 PRK07334 threonine dehydratase 99.3 6E-11 1.3E-15 116.8 13.7 101 92-199 23-125 (403)
63 PLN02550 threonine dehydratase 99.2 1.1E-10 2.4E-15 121.3 14.4 103 91-200 108-212 (591)
64 TIGR03528 2_3_DAP_am_ly diamin 99.2 2.8E-10 6.1E-15 112.7 14.9 104 91-200 40-168 (396)
65 PRK08639 threonine dehydratase 99.2 3E-10 6.5E-15 112.7 14.2 100 91-197 24-125 (420)
66 TIGR01747 diampropi_NH3ly diam 99.1 9.5E-10 2.1E-14 108.4 14.8 103 91-199 21-148 (376)
67 COG1171 IlvA Threonine dehydra 99.1 2.2E-09 4.7E-14 105.6 14.1 105 90-201 23-130 (347)
68 PLN02356 phosphateglycerate ki 99.1 3.5E-09 7.7E-14 106.4 15.0 102 92-199 53-158 (423)
69 PRK06450 threonine synthase; V 98.9 2.1E-08 4.6E-13 97.5 15.1 97 89-200 55-152 (338)
70 PRK02991 D-serine dehydratase; 98.9 3E-08 6.6E-13 100.0 15.6 105 90-200 73-212 (441)
71 KOG1250 Threonine/serine dehyd 98.9 2.6E-08 5.6E-13 99.7 13.1 103 90-199 64-168 (457)
72 PLN02565 cysteine synthase 98.8 2.1E-07 4.6E-12 89.8 17.4 88 106-200 29-122 (322)
73 PRK08813 threonine dehydratase 98.8 2.4E-07 5.1E-12 91.1 16.7 96 91-199 38-135 (349)
74 PLN03013 cysteine synthase 98.8 2.7E-07 5.9E-12 93.1 17.4 103 91-200 122-230 (429)
75 PLN02569 threonine synthase 98.8 5.1E-07 1.1E-11 92.2 18.6 109 86-200 127-243 (484)
76 cd06447 D-Ser-dehyd D-Serine d 98.8 2.1E-07 4.5E-12 93.1 15.2 102 92-199 52-188 (404)
77 TIGR03844 cysteate_syn cysteat 98.7 7.9E-08 1.7E-12 95.6 12.0 100 92-199 62-171 (398)
78 TIGR02035 D_Ser_am_lyase D-ser 98.6 1.5E-06 3.2E-11 87.7 15.4 103 92-200 70-207 (431)
79 KOG1251 Serine racemase [Signa 98.2 1.7E-05 3.6E-10 76.3 11.4 116 91-214 24-141 (323)
80 COG0031 CysK Cysteine synthase 97.8 0.001 2.2E-08 64.9 16.6 154 102-278 21-191 (300)
81 COG0498 ThrC Threonine synthas 96.5 0.055 1.2E-06 55.0 13.5 109 87-201 71-183 (411)
82 KOG1481 Cysteine synthase [Ami 96.2 0.02 4.4E-07 56.4 8.1 135 92-232 49-191 (391)
83 KOG1252 Cystathionine beta-syn 93.4 0.38 8.2E-06 48.3 8.5 105 80-201 50-160 (362)
84 PF06415 iPGM_N: BPG-independe 91.6 1.3 2.9E-05 41.8 9.3 106 128-233 15-143 (223)
85 TIGR01307 pgm_bpd_ind 2,3-bisp 87.2 6.1 0.00013 41.5 11.1 92 129-220 94-207 (501)
86 PRK05434 phosphoglyceromutase; 84.7 10 0.00022 39.9 11.2 93 128-220 97-211 (507)
87 PRK09225 threonine synthase; V 80.1 25 0.00055 36.4 12.0 86 108-199 97-190 (462)
88 cd01560 Thr-synth_2 Threonine 65.8 1E+02 0.0022 32.0 12.3 86 108-199 96-191 (460)
89 TIGR00730 conserved hypothetic 63.5 37 0.00081 30.7 7.7 49 126-175 17-65 (178)
90 PRK09250 fructose-bisphosphate 61.1 1.1E+02 0.0024 31.1 11.1 91 107-199 126-238 (348)
91 PF10931 DUF2735: Protein of u 59.7 6.4 0.00014 29.4 1.7 40 259-298 3-43 (51)
92 PLN02538 2,3-bisphosphoglycera 57.7 57 0.0012 35.0 9.0 91 129-220 117-234 (558)
93 TIGR00725 conserved hypothetic 53.7 1.5E+02 0.0032 26.2 9.7 48 126-175 16-63 (159)
94 COG1830 FbaB DhnA-type fructos 51.1 2.3E+02 0.0049 27.9 11.1 70 107-177 78-156 (265)
95 COG1611 Predicted Rossmann fol 44.9 1.1E+02 0.0025 28.3 7.8 51 126-178 32-82 (205)
96 COG2515 Acd 1-aminocyclopropan 44.7 25 0.00054 35.2 3.7 141 121-295 70-216 (323)
97 PRK08227 autoinducer 2 aldolas 44.3 2.9E+02 0.0062 26.9 10.7 45 129-173 96-147 (264)
98 PRK06852 aldolase; Validated 43.0 3E+02 0.0066 27.3 10.9 71 129-199 117-209 (304)
99 PLN02282 phosphoglycerate kina 41.9 4.2E+02 0.009 27.5 12.6 66 106-172 17-95 (401)
100 PF09320 DUF1977: Domain of un 39.8 28 0.00061 28.7 2.7 42 92-135 16-57 (107)
101 PLN03032 serine decarboxylase; 39.2 2.7E+02 0.0058 28.0 10.0 86 123-213 61-156 (374)
102 PLN03034 phosphoglycerate kina 38.6 5.1E+02 0.011 27.6 14.3 66 106-172 92-170 (481)
103 TIGR00289 conserved hypothetic 38.4 2.7E+02 0.0058 26.3 9.3 91 102-204 54-146 (222)
104 COG3048 DsdA D-serine dehydrat 38.3 1.7E+02 0.0037 30.1 8.3 87 108-199 102-214 (443)
105 PF02401 LYTB: LytB protein; 35.0 84 0.0018 30.7 5.6 38 137-174 206-243 (281)
106 smart00481 POLIIIAc DNA polyme 34.5 1.5E+02 0.0033 21.6 5.8 50 118-169 5-57 (67)
107 COG4393 Predicted membrane pro 34.3 19 0.00042 36.6 1.1 27 284-321 347-375 (405)
108 PF00857 Isochorismatase: Isoc 33.4 91 0.002 26.5 5.0 60 106-174 86-145 (174)
109 TIGR00216 ispH_lytB (E)-4-hydr 33.2 72 0.0016 31.2 4.8 41 137-177 205-245 (280)
110 PLN02564 6-phosphofructokinase 33.2 6.1E+02 0.013 27.0 11.8 46 129-174 165-213 (484)
111 cd01014 nicotinamidase_related 33.0 1.1E+02 0.0023 26.2 5.4 38 137-174 95-132 (155)
112 COG3573 Predicted oxidoreducta 32.6 2E+02 0.0044 30.1 7.9 109 144-273 8-134 (552)
113 PF06506 PrpR_N: Propionate ca 31.8 46 0.001 29.3 3.0 99 36-175 54-152 (176)
114 PRK11440 putative hydrolase; P 31.7 1.2E+02 0.0026 26.7 5.6 44 128-174 111-154 (188)
115 PF13478 XdhC_C: XdhC Rossmann 31.6 48 0.001 28.6 3.0 30 144-175 1-30 (136)
116 TIGR00486 YbgI_SA1388 dinuclea 31.5 2.2E+02 0.0047 26.8 7.6 60 131-192 48-117 (249)
117 PF00282 Pyridoxal_deC: Pyrido 31.0 2.5E+02 0.0055 27.9 8.3 84 126-212 77-185 (373)
118 COG2086 FixA Electron transfer 30.2 2.2E+02 0.0047 27.7 7.5 75 121-199 63-147 (260)
119 TIGR03614 RutB pyrimidine util 30.2 1.3E+02 0.0027 27.7 5.7 44 128-174 141-184 (226)
120 cd01015 CSHase N-carbamoylsarc 30.0 1.3E+02 0.0029 26.2 5.6 60 106-174 88-147 (179)
121 PF00391 PEP-utilizers: PEP-ut 29.0 1.1E+02 0.0023 23.8 4.3 34 137-174 27-61 (80)
122 PRK01045 ispH 4-hydroxy-3-meth 28.8 86 0.0019 31.0 4.5 39 137-175 207-245 (298)
123 PRK12360 4-hydroxy-3-methylbut 28.4 70 0.0015 31.3 3.8 40 137-176 206-245 (281)
124 PF00218 IGPS: Indole-3-glycer 28.1 1.5E+02 0.0034 28.4 6.1 75 109-199 110-186 (254)
125 cd06259 YdcF-like YdcF-like. Y 27.9 1.2E+02 0.0026 25.3 4.7 74 127-200 21-104 (150)
126 KOG3456 NADH:ubiquinone oxidor 27.6 80 0.0017 27.4 3.6 39 254-296 74-112 (120)
127 TIGR00715 precor6x_red precorr 27.3 1.6E+02 0.0035 28.1 6.0 45 130-176 187-233 (256)
128 cd00431 cysteine_hydrolases Cy 26.9 3.8E+02 0.0081 22.4 8.2 59 107-174 85-143 (161)
129 cd01012 YcaC_related YcaC rela 26.7 1.7E+02 0.0036 25.1 5.5 59 108-175 64-122 (157)
130 PRK02769 histidine decarboxyla 25.9 5.3E+02 0.012 25.8 9.6 103 123-230 60-183 (380)
131 cd06337 PBP1_ABC_ligand_bindin 25.6 1E+02 0.0022 29.4 4.4 56 109-172 44-99 (357)
132 cd06450 DOPA_deC_like DOPA dec 25.5 5.5E+02 0.012 23.9 9.9 72 126-200 36-125 (345)
133 PRK12858 tagatose 1,6-diphosph 25.5 4.9E+02 0.011 26.1 9.2 46 254-299 237-282 (340)
134 TIGR00215 lpxB lipid-A-disacch 25.2 1.5E+02 0.0032 29.3 5.5 47 125-173 70-120 (385)
135 PRK13371 4-hydroxy-3-methylbut 25.1 1.2E+02 0.0027 31.1 5.0 39 139-177 287-325 (387)
136 cd01011 nicotinamidase Nicotin 24.9 1.8E+02 0.0039 26.0 5.6 44 127-174 127-171 (196)
137 cd08550 GlyDH-like Glycerol_de 24.7 2E+02 0.0043 28.1 6.3 46 126-173 63-108 (349)
138 PRK06019 phosphoribosylaminoim 24.4 1.1E+02 0.0024 30.1 4.4 32 142-175 3-34 (372)
139 COG1335 PncA Amidases related 24.4 1.9E+02 0.0042 25.4 5.6 42 129-174 124-166 (205)
140 PLN02618 tryptophan synthase, 24.0 90 0.002 32.0 3.9 86 88-201 62-154 (410)
141 PRK11609 nicotinamidase/pyrazi 23.9 1.9E+02 0.0041 25.9 5.6 45 127-174 131-175 (212)
142 cd01297 D-aminoacylase D-amino 23.8 5.3E+02 0.011 25.7 9.1 74 124-197 164-247 (415)
143 COG1611 Predicted Rossmann fol 23.6 54 0.0012 30.5 2.0 43 253-295 9-55 (205)
144 cd07766 DHQ_Fe-ADH Dehydroquin 23.5 1.8E+02 0.0039 27.8 5.6 48 126-173 64-111 (332)
145 COG0026 PurK Phosphoribosylami 23.3 1.1E+02 0.0024 31.4 4.3 31 143-175 3-33 (375)
146 cd08173 Gro1PDH Sn-glycerol-1- 23.1 1.8E+02 0.004 28.2 5.7 46 126-173 64-109 (339)
147 cd00671 ArgRS_core catalytic c 22.6 3.9E+02 0.0085 24.2 7.4 56 108-168 130-186 (212)
148 COG2099 CobK Precorrin-6x redu 22.6 1.6E+02 0.0035 28.7 5.1 40 134-175 190-231 (257)
149 PRK13957 indole-3-glycerol-pho 22.6 1.9E+02 0.0041 27.9 5.5 66 130-201 114-181 (247)
150 PF04127 DFP: DNA / pantothena 22.2 1.2E+02 0.0026 27.6 4.0 37 139-175 2-52 (185)
151 cd00640 Trp-synth-beta_II Tryp 22.1 1.5E+02 0.0033 26.9 4.6 43 258-301 121-168 (244)
152 TIGR02964 xanthine_xdhC xanthi 21.9 1.3E+02 0.0029 28.4 4.3 32 140-173 99-130 (246)
153 KOG1830 Wiskott Aldrich syndro 21.7 82 0.0018 33.2 3.0 46 2-66 79-124 (518)
154 COG0205 PfkA 6-phosphofructoki 21.4 1.8E+02 0.0038 29.5 5.2 47 131-179 85-131 (347)
155 TIGR03573 WbuX N-acetyl sugar 21.0 6.9E+02 0.015 24.6 9.3 73 126-200 42-122 (343)
156 PF00070 Pyr_redox: Pyridine n 21.0 2.7E+02 0.0059 20.8 5.2 34 144-179 2-35 (80)
157 PLN02743 nicotinamidase 20.5 1.8E+02 0.0039 27.6 4.8 36 137-173 147-191 (239)
158 PRK00087 4-hydroxy-3-methylbut 20.2 1.5E+02 0.0032 31.9 4.7 41 137-177 203-243 (647)
159 COG1162 Predicted GTPases [Gen 20.1 3.6E+02 0.0078 26.9 7.0 81 151-231 95-186 (301)
160 PRK14478 nitrogenase molybdenu 20.0 4.1E+02 0.009 27.4 7.7 56 139-199 323-379 (475)
No 1
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=100.00 E-value=6e-44 Score=340.77 Aligned_cols=179 Identities=24% Similarity=0.238 Sum_probs=153.6
Q ss_pred CccceeeccccccCCCCCCCccccccCCCCcCccCCCCccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHhhhCCCCe
Q 020509 64 SKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTD 143 (325)
Q Consensus 64 ~~I~~~~l~~~~~~~~~g~~~pi~~l~~~tp~l~~~~Ls~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G~~~ 143 (325)
++.||++|.|. |+||++++|+| ++.|++|||||||++|+.+||||+|||||+|+||+++|+|+
T Consensus 4 ~rf~R~~l~~~--------pTPiq~L~rls---------~~lg~eiYiKRDD~t~l~~gGNK~RKLefll~eal~~g~dT 66 (323)
T COG2515 4 SRFPRMELIFG--------PTPIQKLPRLS---------AHLGVEIYIKRDDLTGLAFGGNKIRKLEFLLGEALRKGADT 66 (323)
T ss_pred ccCCccccCCC--------CChhhhHHHHH---------HhcCeEEEEEcccccccccCccHHHHHHHHHhhhhhcCCcE
Confidence 57899998887 56899999874 44578999999999999999999999999999999999999
Q ss_pred EEEeCcccchHHHHHHHHHHHhCCeEEEEecccc-CCccchhhHHHHhCC-eEEEECCCCccchHHHHHHHHHHhccccc
Q 020509 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ-PQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNG 221 (325)
Q Consensus 144 LVT~GG~QSNH~~AtAaaAa~lGLkcvlvlrge~-~~~~tGN~ll~~LlG-~V~~V~r~~y~~kda~~e~~~~~~~GasG 221 (325)
|||+||+||||+++||++|+++|++|++++++++ .-...||.++++++| +++.++.+.+.-.+.-.+..
T Consensus 67 lvT~GgiQSNh~r~tAavA~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~--------- 137 (323)
T COG2515 67 LVTYGGIQSNHVRQTAAVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEEL--------- 137 (323)
T ss_pred EEEecccchhHHHHHHHHHHhcCCcEEEEEeccccccccccchhhhhhcCceEEEecCCCChhhchhhHHH---------
Confidence 9999999999999999999999999999999877 225689999999999 99999998753211111111
Q ss_pred chhhHHHHHHHHHHHhhhhhccccccchhhhhhccCCcEEEEeCCCcchhhhhhhccccccccc------ccceEEeeec
Q 020509 222 DVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLVLIPGSFTWKK------KGYKICCGCW 295 (325)
Q Consensus 222 ~vr~~~eI~~qe~~~q~~~~~~~~~~d~~~~l~~~g~~~y~ip~GGSnaiG~lGyi~~~~e~~~------~~~~~~~~~~ 295 (325)
.++++++|.|||+||+||+|++|.+|||+++.|++. +.|.|||+||
T Consensus 138 ----------------------------~e~~~~~g~kpyvIp~GG~~~~g~lGyv~~a~Ei~~Q~~~~~~fD~vVva~g 189 (323)
T COG2515 138 ----------------------------AEEVRKQGGKPYVIPEGGSSPLGALGYVRLALEIAEQAEQLLKFDSVVVAPG 189 (323)
T ss_pred ----------------------------HHHHHhcCCCCcEeccCCcCccccccHHHHHHHHHHHHhhccCCCEEEEeCC
Confidence 245778899999999999999999999999999983 4567888886
Q ss_pred c
Q 020509 296 Y 296 (325)
Q Consensus 296 ~ 296 (325)
-
T Consensus 190 s 190 (323)
T COG2515 190 S 190 (323)
T ss_pred C
Confidence 3
No 2
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-41 Score=326.87 Aligned_cols=205 Identities=18% Similarity=0.177 Sum_probs=179.9
Q ss_pred cccChHHHHHHHhhc--cccc--cCCCCccceeeccccccCCCCCCCccccccCCCCcCccCCCCccCCCCeEEEEecCC
Q 020509 41 VRMSGEELLSRLLDR--KWAL--TSPDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDL 116 (325)
Q Consensus 41 ~~~~~~~~~~~~~~r--~w~l--p~p~~~I~~~~l~~~~~~~~~g~~~pi~~l~~~tp~l~~~~Ls~~~G~~l~IKRDDL 116 (325)
=+++||.||..|.+= .|.- -+|.+ ..++..+.. +|.|||+|++|+.|+|..+ |++||+|||||
T Consensus 14 G~yVpE~Lmpal~eLe~ay~~~~~D~~F-~~el~~~l~---~Y~GRptpLy~a~~Lt~~~---------gakiyLKREDL 80 (396)
T COG0133 14 GQYVPETLMPALEELEKAYEKAKNDPEF-QAELDYLLK---DYAGRPTPLYFAERLTEHL---------GAKIYLKREDL 80 (396)
T ss_pred CEechHHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHH---HhCCCCChhHHHHHHHHhh---------CceEEEehhhh
Confidence 468899999888762 3322 33333 334444443 5999999999988876544 67999999999
Q ss_pred CCCCCCChhHhhHHhhHHHh---hhCCCCeEEE-eCcccchHHHHHHHHHHHhCCeEEEEeccccCCccchhhHHHHhCC
Q 020509 117 LHPLVNGNKARKMDALLPLL---EDHIVTDLVT-CGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYG 192 (325)
Q Consensus 117 ~h~~lgGNK~RKLeylL~dA---~~~G~~~LVT-~GG~QSNH~~AtAaaAa~lGLkcvlvlrge~~~~~tGN~ll~~LlG 192 (325)
+|++ .||+++.|+|+ +++|+++||+ +|+.| |++|||++||++||+|++||+.+|.+++..|+++|+|+|
T Consensus 81 ~HtG-----AHKiNN~lGQ~LLAkrMGK~riIAETGAGQ--HGVAtAta~A~fgl~C~iYMGa~Dv~RQ~~NVfRM~LlG 153 (396)
T COG0133 81 NHTG-----AHKINNALGQALLAKRMGKTRIIAETGAGQ--HGVATATAAALFGLECVIYMGAEDVERQALNVFRMRLLG 153 (396)
T ss_pred cccc-----hhhHHHHHHHHHHHHHhCCceEEeecCCCc--ccHHHHHHHHHhCCceEEEecchhhhhcccchhhhhhcC
Confidence 9998 99999999996 8999999999 99999 999999999999999999999999999999999999999
Q ss_pred -eEEEECCCCccchHHHHHHHHHHh---------cccc-------cchhhHHHHHHHHHHHhhhhhccccccchhhhhhc
Q 020509 193 -KVTYVPRTHYAHRIEMLKSYANLV---------AGNN-------GDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDN 255 (325)
Q Consensus 193 -~V~~V~r~~y~~kda~~e~~~~~~---------~Gas-------G~vr~~~eI~~qe~~~q~~~~~~~~~~d~~~~l~~ 255 (325)
+|++|..++.++||++++++++|+ .|+. .+||.||+||++|+++|+++ ..++
T Consensus 154 A~V~pV~sGs~TLKDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP~iVRdFQ~vIG~E~k~Qile-----------~egr 222 (396)
T COG0133 154 AEVVPVTSGSGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVRDFQSVIGEEAKAQILE-----------KEGR 222 (396)
T ss_pred ceEEEeccCCchHHHHHHHHHHHHHhccccceEEEeeccCCCCchHHHHHHHHHHhHHHHHHHHH-----------HhCC
Confidence 999999999999999999999997 6666 89999999999999999998 6889
Q ss_pred cCCcEEEEeCCCcchhhhhhh
Q 020509 256 CRKKVLIVNEGAGDAVALLVL 276 (325)
Q Consensus 256 ~g~~~y~ip~GGSnaiG~lGy 276 (325)
.|+.+++|.|||||++|+|.=
T Consensus 223 lPD~vvACVGGGSNAiG~F~~ 243 (396)
T COG0133 223 LPDAVVACVGGGSNAIGIFHP 243 (396)
T ss_pred CCCeEEEeccCCcchhhhccc
Confidence 999999999999999999973
No 3
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.97 E-value=2.7e-31 Score=258.80 Aligned_cols=205 Identities=18% Similarity=0.157 Sum_probs=171.7
Q ss_pred cChHHHHHHHhh--ccccccCCCCccceeeccccccCC-CCCCCccccccCCCCcCccCCCCccCCCCeEEEEecCCCCC
Q 020509 43 MSGEELLSRLLD--RKWALTSPDSKIHQIKLFTTTEKH-GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHP 119 (325)
Q Consensus 43 ~~~~~~~~~~~~--r~w~lp~p~~~I~~~~l~~~~~~~-~~g~~~pi~~l~~~tp~l~~~~Ls~~~G~~l~IKRDDL~h~ 119 (325)
.+||.|..-|.+ ....-...+..|++.=+ |+. |.|||+|+.+++|+|.+++- |++||+|||||+|+
T Consensus 83 yvPE~L~h~l~ELek~f~~~~~d~df~ee~~----eiy~y~gRpspL~~AkRLte~~q~-------ga~IylKrEdlnh~ 151 (477)
T KOG1395|consen 83 YVPEALAHCLPELEKQFYTAERDEDFWEEFL----EIYKYLGRPSPLIRAKRLTEHCQT-------GARIYLKREDLNHT 151 (477)
T ss_pred cChHHHHHHHHHHHHHHHHHhccchHHHHHH----HHHHHcCCCchhHHHHHHHHHhCC-------CCEEEEEecCCCcc
Confidence 456766665543 11222223333444311 122 78888888888888877653 78999999999998
Q ss_pred CCCChhHhhHHhhHHHh---hhCCCCeEEE-eCcccchHHHHHHHHHHHhCCeEEEEeccccCCccchhhHHHHhCC-eE
Q 020509 120 LVNGNKARKMDALLPLL---EDHIVTDLVT-CGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYG-KV 194 (325)
Q Consensus 120 ~lgGNK~RKLeylL~dA---~~~G~~~LVT-~GG~QSNH~~AtAaaAa~lGLkcvlvlrge~~~~~tGN~ll~~LlG-~V 194 (325)
+ .||+++.++|| ++.|++.||+ +|++| |++|||.+|+++||+|+++|..++..++.-|+++|+++| +|
T Consensus 152 G-----sHKiNnav~QallakrlGkknviaETGAGQ--hGvatA~a~a~FGl~C~v~mgAed~~rqalnvfrmrllGAkV 224 (477)
T KOG1395|consen 152 G-----SHKINNAVAQALLAKRLGKKNVIAETGAGQ--HGVATATACAKFGLDCTVYMGAEDYRRQALNVFRMRLLGAKV 224 (477)
T ss_pred c-----cCCcccHHHHHHHHHHhcccceeeccCCCc--cchHHHHHHHHhCCceEEEechhHHHHHHHHHHHHHHhCceE
Confidence 8 89999999997 7899999999 99999 999999999999999999999999889999999999999 99
Q ss_pred EEECCCCccchHHHHHHHHHHh---------cccc-------cchhhHHHHHHHHHHHhhhhhccccccchhhhhhccCC
Q 020509 195 TYVPRTHYAHRIEMLKSYANLV---------AGNN-------GDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRK 258 (325)
Q Consensus 195 ~~V~r~~y~~kda~~e~~~~~~---------~Gas-------G~vr~~~eI~~qe~~~q~~~~~~~~~~d~~~~l~~~g~ 258 (325)
++|+.+..+++|+..++.+.|+ +|+. .+|+.||++|+.|.+.|.++ +.+..||
T Consensus 225 ~pv~sGt~tLrda~sea~r~wvt~~ett~y~~gs~~gphp~pt~vr~fhsvIg~Et~~Q~me-----------~~g~~PD 293 (477)
T KOG1395|consen 225 HPVTSGTRTLRDATSEAGRLWVTNSETTHYAAGSAIGPHPYPTVVRTFHSVIGKETKIQQME-----------KFGKLPD 293 (477)
T ss_pred eecCCCceehhcccchhhhhhhhhhheeeeeecccCCCCCcHHHHHHHHHHHhHHHHHHHHH-----------HhCCCCC
Confidence 9999999999999999999887 5555 78899999999999999988 6789999
Q ss_pred cEEEEeCCCcchhhhhhh
Q 020509 259 KVLIVNEGAGDAVALLVL 276 (325)
Q Consensus 259 ~~y~ip~GGSnaiG~lGy 276 (325)
.+++|.|||||.+|+|.=
T Consensus 294 ~vvaCvGGGSN~~Glf~p 311 (477)
T KOG1395|consen 294 AVVACVGGGSNSAGLFSP 311 (477)
T ss_pred eEEEeccCCCccccccch
Confidence 999999999999999863
No 4
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=99.95 E-value=1.2e-27 Score=236.18 Aligned_cols=208 Identities=18% Similarity=0.199 Sum_probs=162.5
Q ss_pred ccccChHHHHHHHhh--cccc--ccCCCCccceeeccccccCCCCCCCccccccCCCCcCccCCCCccCCCCeEEEEecC
Q 020509 40 NVRMSGEELLSRLLD--RKWA--LTSPDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDD 115 (325)
Q Consensus 40 ~~~~~~~~~~~~~~~--r~w~--lp~p~~~I~~~~l~~~~~~~~~g~~~pi~~l~~~tp~l~~~~Ls~~~G~~l~IKRDD 115 (325)
-=+++||.|+..|.+ ..|. ..+|.+ ..++.-++. +|.|++|||.++++++..++ |.+||+||||
T Consensus 15 gg~~~~~~~~~~~~~~~~~~~~~~~~~~f-~~~~~~~~~---~~~grpTPL~~~~~Ls~~~g--------g~~IylK~Ed 82 (397)
T PRK04346 15 GGRFVPETLMPALEELEEAYEKAKNDPEF-QAELDYLLK---NYVGRPTPLYFAERLSEHLG--------GAKIYLKRED 82 (397)
T ss_pred CCEeCCHHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHH---HhcCCCCCceEhHHHHHHcC--------CCeEEEEECC
Confidence 346889999998876 2332 244544 344455554 48998888888887766553 6799999999
Q ss_pred CCCCCCCChhHhhHHhhHHH---hhhCCCCeEEE-eCcccchHHHHHHHHHHHhCCeEEEEeccccCCccchhhHHHHhC
Q 020509 116 LLHPLVNGNKARKMDALLPL---LEDHIVTDLVT-CGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIY 191 (325)
Q Consensus 116 L~h~~lgGNK~RKLeylL~d---A~~~G~~~LVT-~GG~QSNH~~AtAaaAa~lGLkcvlvlrge~~~~~tGN~ll~~Ll 191 (325)
|+|++ .+|+++.+.+ |+++|++++|+ +|++| |++|||++|+++|++|+++|...+..++..|+++|+++
T Consensus 83 lnptG-----S~K~r~al~~~l~A~~~Gk~~vIaetgaGn--hG~A~A~~aa~~Gl~c~I~mp~~d~~rq~~nv~~m~~l 155 (397)
T PRK04346 83 LNHTG-----AHKINNVLGQALLAKRMGKKRIIAETGAGQ--HGVATATAAALLGLECVIYMGAEDVERQALNVFRMKLL 155 (397)
T ss_pred CCCcc-----chHHHHHHHHHHHHHHcCCCeEEEecCcHH--HHHHHHHHHHHcCCcEEEEecCCchhhhhhHHHHHHHC
Confidence 99975 4555555555 67889998888 78887 99999999999999999999876656678999999999
Q ss_pred C-eEEEECCCCccchHHHHHHHHHHh---------cccc-------cchhhHHHHHHHHHHHhhhhhccccccchhhhhh
Q 020509 192 G-KVTYVPRTHYAHRIEMLKSYANLV---------AGNN-------GDVVWCNEIFEASLTAQKSRASCLGQMDAHKGID 254 (325)
Q Consensus 192 G-~V~~V~r~~y~~kda~~e~~~~~~---------~Gas-------G~vr~~~eI~~qe~~~q~~~~~~~~~~d~~~~l~ 254 (325)
| +|+.|+.+..+++++++++.++|+ .|+. .+|+.+|++++.|+++|+.+ .++
T Consensus 156 GA~Vv~v~~g~~~l~da~~ea~~~~~~~~~~~~y~~gs~~gphp~p~~v~~~q~tig~Ei~eQ~~~-----------~~g 224 (397)
T PRK04346 156 GAEVVPVTSGSRTLKDAVNEALRDWVTNVEDTHYLIGSVAGPHPYPTMVRDFQSVIGEEAKAQILE-----------KEG 224 (397)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEeCCcCCCCCchHHHHHhcchHHHHHHHHHHH-----------hhC
Confidence 9 999999876667778777776655 2221 34688999999999999976 356
Q ss_pred ccCCcEEEEeCCCcchhhhhhhc
Q 020509 255 NCRKKVLIVNEGAGDAVALLVLI 277 (325)
Q Consensus 255 ~~g~~~y~ip~GGSnaiG~lGyi 277 (325)
+.++.++++.|||||++|++..+
T Consensus 225 ~~pD~vVa~VGgGg~~~Gi~~~f 247 (397)
T PRK04346 225 RLPDAVVACVGGGSNAIGIFHPF 247 (397)
T ss_pred CCCCEEEEecCccHhHHHHHHHH
Confidence 78999999999999999996633
No 5
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=99.94 E-value=2e-26 Score=219.88 Aligned_cols=107 Identities=30% Similarity=0.365 Sum_probs=92.5
Q ss_pred CCCcCccCCCCccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHhhhCCCCeEEEeCcccchHHHHHHHHHHHhCCeEE
Q 020509 91 NTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSH 170 (325)
Q Consensus 91 ~~tp~l~~~~Ls~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G~~~LVT~GG~QSNH~~AtAaaAa~lGLkcv 170 (325)
.+||+...+++++..|++||+||||++++..||||+||++++|.+|+++|+++|||+|+.+|||++|+|++|+++|++|+
T Consensus 20 ~~TPl~~~~~l~~~~g~~v~~K~E~l~~~~~gg~K~R~~~~~l~~a~~~G~~~vv~~~~ssGN~g~alA~~a~~~G~~~~ 99 (329)
T PRK14045 20 WETPIQYLPNISRELGADVYVKRDDLTGLGIGGNKIRKLEYLLGDALSRGADVVITVGAVHSNHAFVTGLAAKKLGLDAV 99 (329)
T ss_pred CCCCcccchhhHHHhCCeEEEEcccccCCCCCcchHHHHHhHHHHHHHcCCCEEEEeCccHHHHHHHHHHHHHHcCCeEE
Confidence 34455544455555678999999999998889999999999999999999999999999999999999999999999999
Q ss_pred EEeccccCCccchhhHHHHhCC-eEEEECC
Q 020509 171 LLLRGEQPQILTGYNLISTIYG-KVTYVPR 199 (325)
Q Consensus 171 lvlrge~~~~~tGN~ll~~LlG-~V~~V~r 199 (325)
+|++...+ ..+|..+++++| +++.++.
T Consensus 100 ivvp~~~~--~~~~~~l~~~~Ga~v~~~~~ 127 (329)
T PRK14045 100 LVLRGKEE--LKGNYLLDKIMGIETRVYEA 127 (329)
T ss_pred EEEeCCCC--CCcCHHHHHHCCCEEEEECC
Confidence 99986532 567888889999 9888764
No 6
>PLN02618 tryptophan synthase, beta chain
Probab=99.94 E-value=2e-26 Score=228.48 Aligned_cols=217 Identities=16% Similarity=0.139 Sum_probs=166.4
Q ss_pred cccccChHHHHHHHhhc--cc--cccCCCCccceeeccccccCCCCCCCccccccCCCCcCccCCCCccCCCCeEEEEec
Q 020509 39 CNVRMSGEELLSRLLDR--KW--ALTSPDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRD 114 (325)
Q Consensus 39 ~~~~~~~~~~~~~~~~r--~w--~lp~p~~~I~~~~l~~~~~~~~~g~~~pi~~l~~~tp~l~~~~Ls~~~G~~l~IKRD 114 (325)
--=+++||.|+..|.+= .| ...+|.+ ..++.-.+. +|.||+|||.++++++..++..+ ..|++||+|||
T Consensus 22 ~gg~~~~~~~~~~~~~~~~~~~~~~~~~~f-~~~~~~~l~---~~vGr~TPL~~~~~Ls~~~g~~~---~~g~~IylK~E 94 (410)
T PLN02618 22 FGGKYVPETLMTALSELEAAFNALATDPEF-QEELAGILK---DYVGRETPLYFAERLTEHYKRAD---GEGPEIYLKRE 94 (410)
T ss_pred cCCEeCCHHHHHHHHHHHHHHHHHhcChhh-HHHHHHHHH---HhcCCCCceeEhhhHHHHhcccc---CCCCEEEEEeC
Confidence 34478999999988762 23 2244444 233444443 38898899999988877664210 11579999999
Q ss_pred CCCCCCCCChhHhhHHhhHHHhhhCCCCeEEE-eCcccchHHHHHHHHHHHhCCeEEEEeccccCCccchhhHHHHhCC-
Q 020509 115 DLLHPLVNGNKARKMDALLPLLEDHIVTDLVT-CGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYG- 192 (325)
Q Consensus 115 DL~h~~lgGNK~RKLeylL~dA~~~G~~~LVT-~GG~QSNH~~AtAaaAa~lGLkcvlvlrge~~~~~tGN~ll~~LlG- 192 (325)
||+|+ |.+|.|-.-..+..|+++|++++|+ +|++| |++|||++|+++|++|++||...+..++..|+++|+++|
T Consensus 95 ~lnpt--GS~K~R~a~~~~l~A~~~g~~~vIaesgaGN--hG~AlA~aaa~~Gl~~~I~m~~~~~~~~~~nv~~mr~lGA 170 (410)
T PLN02618 95 DLNHT--GAHKINNAVAQALLAKRLGKKRIIAETGAGQ--HGVATATVCARFGLECIVYMGAQDMERQALNVFRMRLLGA 170 (410)
T ss_pred CCCCc--cchHHHHHHHHHHHHHHcCCCEEEEEcCcHH--HHHHHHHHHHHcCCcEEEEEcCCchhhhhhhHHHHHHCCC
Confidence 99996 6777776666666678899999887 67766 999999999999999999998866566789999999999
Q ss_pred eEEEECCCCccchHHHHHHHHHHh---------cccc-------cchhhHHHHHHHHHHHhhhhhccccccchhhhhhcc
Q 020509 193 KVTYVPRTHYAHRIEMLKSYANLV---------AGNN-------GDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNC 256 (325)
Q Consensus 193 ~V~~V~r~~y~~kda~~e~~~~~~---------~Gas-------G~vr~~~eI~~qe~~~q~~~~~~~~~~d~~~~l~~~ 256 (325)
+|+.|+.++.++++++.+++++|. .|+. -+++.+|++++.|+++|+.+ ..++.
T Consensus 171 ~Vi~v~~g~~~~~dA~~ea~~~~~~~~~~~~yi~gs~~gp~P~~~~v~~~q~tig~Ei~~Q~~~-----------~~g~~ 239 (410)
T PLN02618 171 EVRPVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHSVIGKETRRQAME-----------KWGGK 239 (410)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhccCCCEEEecCcCCCCCCHHHHHHhhHHHHHHHHHHHHH-----------HhCCC
Confidence 999998765567777766665553 2221 36789999999999999977 45668
Q ss_pred CCcEEEEeCCCcchhhhhhhc
Q 020509 257 RKKVLIVNEGAGDAVALLVLI 277 (325)
Q Consensus 257 g~~~y~ip~GGSnaiG~lGyi 277 (325)
++.++++.|||||++|++-++
T Consensus 240 pD~VV~~VGgGg~~~Gi~~~f 260 (410)
T PLN02618 240 PDVLVACVGGGSNAMGLFHEF 260 (410)
T ss_pred CCEEEEEeCchHHHHHHHHHH
Confidence 999999999999999999554
No 7
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=99.93 E-value=8.6e-26 Score=215.98 Aligned_cols=122 Identities=30% Similarity=0.336 Sum_probs=97.8
Q ss_pred CccceeeccccccCCCCCCCccccccCCCCcCccCCCCccCCCCeEEEEecCCCCCC-CCChhHhhHHhhHHHhhhCCCC
Q 020509 64 SKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPL-VNGNKARKMDALLPLLEDHIVT 142 (325)
Q Consensus 64 ~~I~~~~l~~~~~~~~~g~~~pi~~l~~~tp~l~~~~Ls~~~G~~l~IKRDDL~h~~-lgGNK~RKLeylL~dA~~~G~~ 142 (325)
.++|+++|..+ +||+..++++++.++. +++||+||||+++++ +||||.||+++++.+|+++|++
T Consensus 3 ~~~~~~~l~~g--------~TPl~~~~~l~~~~g~-------~~~l~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~~ 67 (337)
T TIGR01274 3 SRFPRYPLTFG--------PSPIHPLPRLSQHLGG-------KVTLYAKREDCNSGLAFGGNKTRKLEYLIPDAQAQGCT 67 (337)
T ss_pred CcCCccccCCC--------CCCceEhHhhHHhcCC-------CceEEEEccCCcCCcCccchHHHHHHHHHHHHHHcCCC
Confidence 45666666654 3455555554443321 248999999999874 7999999999999999999999
Q ss_pred eEEEeCcccchHHHHHHHHHHHhCCeEEEEeccccC-C----ccchhhHHHHhCC-eEEEECCC
Q 020509 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQP-Q----ILTGYNLISTIYG-KVTYVPRT 200 (325)
Q Consensus 143 ~LVT~GG~QSNH~~AtAaaAa~lGLkcvlvlrge~~-~----~~tGN~ll~~LlG-~V~~V~r~ 200 (325)
+|+|+||.+|||++|+|++|+++|++|++++....+ . .+..|..+++.+| +|+.++..
T Consensus 68 ~vvs~ggs~gN~g~alA~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~~~ 131 (337)
T TIGR01274 68 TLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDPDG 131 (337)
T ss_pred EEEECCCCcchHHHHHHHHHHHcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEeCCc
Confidence 999999999999999999999999999999976432 1 1368999999999 99988754
No 8
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=99.93 E-value=1.5e-25 Score=210.65 Aligned_cols=114 Identities=29% Similarity=0.372 Sum_probs=98.4
Q ss_pred cCCCCcCccCCCCccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHhhhCCCCeEEEeCcccchHHHHHHHHHHHhCCe
Q 020509 89 LNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLK 168 (325)
Q Consensus 89 l~~~tp~l~~~~Ls~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G~~~LVT~GG~QSNH~~AtAaaAa~lGLk 168 (325)
+.++||+...++|++..|.+||+||||++++..||||.||+.+++.+|+++|+++|||+||.++||+.|+|++|+++|++
T Consensus 4 ~~~~TPl~~~~~l~~~~g~~l~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~g~~~vv~~g~ssGN~g~alA~~a~~~G~~ 83 (311)
T TIGR01275 4 IPWPTPIQYLPRISREIGAEIYIKRDDLTGLGIGGNKIRKLEYLLADALSKGADTVITVGAIQSNHARATALAAKKLGLD 83 (311)
T ss_pred CCCCCcceechhhhhhcCCeEEEEeccCcCCCCCchhHHHHHHHHHHHHHcCCCEEEEcCCchhHHHHHHHHHHHHhCCc
Confidence 44566666666666666889999999999988899999999999999999999999999999999999999999999999
Q ss_pred EEEEeccccCCccchhhHHHHhCC-eEEEECCCCccc
Q 020509 169 SHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAH 204 (325)
Q Consensus 169 cvlvlrge~~~~~tGN~ll~~LlG-~V~~V~r~~y~~ 204 (325)
|+++++... ....|..+++.+| +|+++++.+|..
T Consensus 84 ~~ivvp~~~--~~~~~~~~~~~~Ga~v~~v~~~~~~~ 118 (311)
T TIGR01275 84 AVLVLREKE--ELNGNLLLDKLMGAETRVYSAEEYFE 118 (311)
T ss_pred eEEEecCCc--cCCCCHHHHHHcCCEEEEECchhhhh
Confidence 999998743 2456777789999 999998765543
No 9
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=99.93 E-value=1.4e-25 Score=221.85 Aligned_cols=210 Identities=18% Similarity=0.178 Sum_probs=161.1
Q ss_pred ccccccChHHHHHHHhh--cccc--ccCCCCccceeeccccccCCCCCCCccccccCCCCcCccCCCCccCCCCeEEEEe
Q 020509 38 ICNVRMSGEELLSRLLD--RKWA--LTSPDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVR 113 (325)
Q Consensus 38 ~~~~~~~~~~~~~~~~~--r~w~--lp~p~~~I~~~~l~~~~~~~~~g~~~pi~~l~~~tp~l~~~~Ls~~~G~~l~IKR 113 (325)
.--=+++||.|+..|.+ ..+. ..+|.+ ..++..++. +|.|++|||.++++++..++ |.+||+||
T Consensus 17 ~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~f-~~~~~~~~~---~~~g~pTPL~~~~~Ls~~~G--------g~~IylK~ 84 (402)
T PRK13028 17 EYGGQFVPPELKPALDELEAAYEEIKKDPDF-IAELRYLLK---HYVGRPTPLYHAKRLSEELG--------GAQIYLKR 84 (402)
T ss_pred CcCCEeCCHHHHHHHHHHHHHHHHHhCCHHH-HHHHHHHHH---HhCCCCCCeeehHHhHhhcC--------CCeEEEEE
Confidence 33447899999998876 2332 244444 344444443 48898888888888765553 56999999
Q ss_pred cCCCCCCCCChhHhhHHhhHHH---hhhCCCCeEEE-eCcccchHHHHHHHHHHHhCCeEEEEeccccCCccchhhHHHH
Q 020509 114 DDLLHPLVNGNKARKMDALLPL---LEDHIVTDLVT-CGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLIST 189 (325)
Q Consensus 114 DDL~h~~lgGNK~RKLeylL~d---A~~~G~~~LVT-~GG~QSNH~~AtAaaAa~lGLkcvlvlrge~~~~~tGN~ll~~ 189 (325)
|||+|++ .||+++.+.+ |+++|++++|+ +|++| |++|||++|+++|++|++||...++.++..|+++++
T Consensus 85 EdlnptG-----S~K~r~al~~~l~A~~~G~~~vI~etgsGn--hG~A~A~aaa~~Gl~~~I~m~~~d~~~q~~nv~~mr 157 (402)
T PRK13028 85 EDLNHTG-----AHKINNCLGQALLAKRMGKKRLIAETGAGQ--HGVATATAAALFGLECEIYMGEVDIERQHPNVFRMK 157 (402)
T ss_pred CCCCCCc-----chHHHHHHHHHHHHHHcCCCeEEEecCcHH--HHHHHHHHHHHcCCCEEEEECCCcchhhHHHHHHHH
Confidence 9999975 5777766665 57789988776 78877 999999999999999999998776666779999999
Q ss_pred hCC-eEEEECCCCccchHHHHHHHHHHh---------cccc-------cchhhHHHHHHHHHHHhhhhhccccccchhhh
Q 020509 190 IYG-KVTYVPRTHYAHRIEMLKSYANLV---------AGNN-------GDVVWCNEIFEASLTAQKSRASCLGQMDAHKG 252 (325)
Q Consensus 190 LlG-~V~~V~r~~y~~kda~~e~~~~~~---------~Gas-------G~vr~~~eI~~qe~~~q~~~~~~~~~~d~~~~ 252 (325)
++| +|+.|+.+..++++++++++++|. .|+. .+++.+|++++.|+.+|+.+ +
T Consensus 158 ~~GAeVi~v~~g~~~~~~a~~~a~~~~~~~~~~~~y~~~s~~gp~p~p~~v~~~q~tig~Ei~~Q~~~-----------~ 226 (402)
T PRK13028 158 LLGAEVVPVTRGGRTLKEAVDSAFEDYLKDPDNTHYAIGSVVGPHPFPMMVRDFQSVIGEEAREQFLE-----------M 226 (402)
T ss_pred HcCCEEEEEcCCCCCHHHHHHHHHHHHHHhcCCcEEEecCcCCCCCcHHHHHHHhHHHHHHHHHHHHH-----------h
Confidence 999 999998765556777666655443 2221 24688999999999999866 3
Q ss_pred hhccCCcEEEEeCCCcchhhhhhhc
Q 020509 253 IDNCRKKVLIVNEGAGDAVALLVLI 277 (325)
Q Consensus 253 l~~~g~~~y~ip~GGSnaiG~lGyi 277 (325)
....++.++++.|||||+.|++-.+
T Consensus 227 ~g~~pD~vV~~VGgGg~~~Gi~~~f 251 (402)
T PRK13028 227 TGRLPDAVVACVGGGSNAIGLFSAF 251 (402)
T ss_pred hCCCCCEEEEEcCchHHHHHHHHHH
Confidence 5567999999999999999997666
No 10
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=99.93 E-value=3.2e-25 Score=211.84 Aligned_cols=173 Identities=23% Similarity=0.249 Sum_probs=122.2
Q ss_pred CCCCcCccCCCCccCCC--CeEEEEecCCCCCC-CCChhHhhHHhhHHHhhhCCCCeEEEeCcccchHHHHHHHHHHHhC
Q 020509 90 NNTCPFLGDDMIMRDED--RCFYVVRDDLLHPL-VNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERG 166 (325)
Q Consensus 90 ~~~tp~l~~~~Ls~~~G--~~l~IKRDDL~h~~-lgGNK~RKLeylL~dA~~~G~~~LVT~GG~QSNH~~AtAaaAa~lG 166 (325)
..+||++..+++++..| .+||+||||+++++ +||||.||+.+++.+|+++|+++|+|+||.+|||++|+|++|+++|
T Consensus 13 ~g~TPL~~~~~l~~~~g~~~~v~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~~~vvs~G~s~GN~g~alA~aa~~~G 92 (337)
T PRK12390 13 FGPTPIHPLKRLSAHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDALAQGADTLVSIGGVQSNHTRQVAAVAAHLG 92 (337)
T ss_pred CCCCcceeHHHHHHHhCCCCeEEEEeCCCCCCCCccchhHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHHcC
Confidence 34555555555555556 69999999999874 7999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeccccCC-----ccchhhHHHHhCC-eEEEECCCCc-cchHHHHHH---HHH-------Hhcccc-------cc
Q 020509 167 LKSHLLLRGEQPQ-----ILTGYNLISTIYG-KVTYVPRTHY-AHRIEMLKS---YAN-------LVAGNN-------GD 222 (325)
Q Consensus 167 Lkcvlvlrge~~~-----~~tGN~ll~~LlG-~V~~V~r~~y-~~kda~~e~---~~~-------~~~Gas-------G~ 222 (325)
++|++|+....+. ...+|..+++.+| +|++++.... ..++++.++ +.+ ++.+.. |+
T Consensus 93 ~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 172 (337)
T PRK12390 93 MKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLVPDGFDIGIRKSWEDALEDVRAAGGKPYAIPAGASDHPLGGLGF 172 (337)
T ss_pred CeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEeCCCcchhHHHHHHHHHHHHHhCCCceEEeCCcCCCCCcccHHH
Confidence 9999998764332 1457999999999 9999987421 122222211 111 111111 23
Q ss_pred hhhHHHHHHHHHHHhhhhhccccccchhhhhhccCCcEEEEeCCCcchhhhhhhccc
Q 020509 223 VVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLVLIPG 279 (325)
Q Consensus 223 vr~~~eI~~qe~~~q~~~~~~~~~~d~~~~l~~~g~~~y~ip~GGSnaiG~lGyi~~ 279 (325)
..-+.||++|+- .+...++.+++..|+|++..|+.-+++.
T Consensus 173 ~~~a~Ei~~q~~-----------------~~~~~~d~vvv~vGtGgtlaGi~~~~k~ 212 (337)
T PRK12390 173 VGFAEEVRAQEA-----------------ELGFKFDYIVVCSVTGSTQAGMVVGFAA 212 (337)
T ss_pred HHHHHHHHHHHH-----------------hcCCCCCEEEEecCcchhHHHHHHHHHh
Confidence 333444443321 2444577777777888888887666653
No 11
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=99.91 E-value=4.1e-24 Score=201.29 Aligned_cols=108 Identities=33% Similarity=0.329 Sum_probs=91.9
Q ss_pred CccCCCCccCC--CCeEEEEecCCCCCC-CCChhHhhHHhhHHHhhhCCCCeEEEeCcccchHHHHHHHHHHHhCCeEEE
Q 020509 95 FLGDDMIMRDE--DRCFYVVRDDLLHPL-VNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHL 171 (325)
Q Consensus 95 ~l~~~~Ls~~~--G~~l~IKRDDL~h~~-lgGNK~RKLeylL~dA~~~G~~~LVT~GG~QSNH~~AtAaaAa~lGLkcvl 171 (325)
++..++|++.. +.+||+||||+++++ +||||.||+.+++.+|+++|+++|||+||.++||+.|+|++|+++|++|++
T Consensus 3 l~~~~~l~~~~g~~~~l~~K~E~~np~gsfgs~K~R~~~~~l~~a~~~g~~~vv~~ggs~GN~g~alA~~a~~~G~~~~i 82 (307)
T cd06449 3 IQYLPRLSEHLGGKVEIYAKRDDCNSGLAFGGNKIRKLEYLLPDALAKGADTLVTVGGIQSNHTRQVAAVAAKLGLKCVL 82 (307)
T ss_pred ccchhHHHHhhCCCCcEEEecccccCCCCccchHHHHHHHHHHHHHHcCCCEEEECCCchhHHHHHHHHHHHHcCCeEEE
Confidence 33333344444 468999999999986 899999999999999999999999999999999999999999999999999
Q ss_pred EeccccCC-----ccchhhHHHHhCC-eEEEECCCCc
Q 020509 172 LLRGEQPQ-----ILTGYNLISTIYG-KVTYVPRTHY 202 (325)
Q Consensus 172 vlrge~~~-----~~tGN~ll~~LlG-~V~~V~r~~y 202 (325)
+++...+. .+.+|..+++.+| +|++++...+
T Consensus 83 ~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~~~ 119 (307)
T cd06449 83 VQENWVPYSDAVYDRVGNILLSRIMGADVRLVSAGFD 119 (307)
T ss_pred EecCCCCcccccccccccHHHHHHCCCEEEEECCcch
Confidence 99876542 2357889999999 9999987654
No 12
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=99.91 E-value=1.2e-23 Score=200.66 Aligned_cols=181 Identities=23% Similarity=0.258 Sum_probs=128.5
Q ss_pred ccccCCCCcCccCCCCccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHhhhCCCCeEEEeCcccchHHHHHHHHHHHh
Q 020509 86 ISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAER 165 (325)
Q Consensus 86 i~~l~~~tp~l~~~~Ls~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G~~~LVT~GG~QSNH~~AtAaaAa~l 165 (325)
+.....+||++..+.|++..|.+||+||||+++++.||||.||+.+++.+|+++|.++|||+|+.++||+.|+|++|+.+
T Consensus 9 ~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~lnp~g~gs~K~R~~~~~l~~a~~~g~~~vvt~g~s~gN~g~alA~~a~~~ 88 (331)
T PRK03910 9 LELAGLPTPLEPLPRLSAALGPDIYIKRDDLTGLALGGNKTRKLEFLLADALAQGADTLITAGAIQSNHARQTAAAAAKL 88 (331)
T ss_pred ccccCCCCCceEhhhhhHhhCCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHcCCCEEEEcCcchhHHHHHHHHHHHHh
Confidence 34445566666666666666889999999999998899999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeccccCCc-----cchhhHHHHhCC-eEEEECCCCccch--HHHHHHHHH----H---h-cccccchhhHHHH
Q 020509 166 GLKSHLLLRGEQPQI-----LTGYNLISTIYG-KVTYVPRTHYAHR--IEMLKSYAN----L---V-AGNNGDVVWCNEI 229 (325)
Q Consensus 166 GLkcvlvlrge~~~~-----~tGN~ll~~LlG-~V~~V~r~~y~~k--da~~e~~~~----~---~-~GasG~vr~~~eI 229 (325)
|++|++|+....+.. ..+|..+++.+| +|+.++..++... .+..+.+.+ . + .+.+-......+.
T Consensus 89 G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~g~~~ 168 (331)
T PRK03910 89 GLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVPAGTDMDAQLEELAEELRAQGRRPYVIPVGGSNALGALGYVA 168 (331)
T ss_pred CCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeCccchHHHHHHHHHHHHHHcCCceEEECCCCCCchhHHHHHH
Confidence 999999998766542 248888999999 9999987632211 112221211 0 1 1122222233334
Q ss_pred HHHHHHHhhhhhccccccchhhhhhccCCcEEEEeCCCcchhhhhhhcc
Q 020509 230 FEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLVLIP 278 (325)
Q Consensus 230 ~~qe~~~q~~~~~~~~~~d~~~~l~~~g~~~y~ip~GGSnaiG~lGyi~ 278 (325)
++.|+.+|+.. .+..++.+++..|+|++..|+.-+++
T Consensus 169 ~~~Ei~~q~~~------------~~~~~d~vv~~vGtGgt~~Gi~~~~k 205 (331)
T PRK03910 169 CALEIAQQLAE------------GGVDFDAVVVASGSGGTHAGLAAGLA 205 (331)
T ss_pred HHHHHHHHHHh------------cCCCCCEEEEeCCcHHHHHHHHHHHH
Confidence 55555444321 11257777777777777888766664
No 13
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=99.91 E-value=5.7e-24 Score=219.36 Aligned_cols=213 Identities=16% Similarity=0.183 Sum_probs=160.3
Q ss_pred cccccccChHHHHHHHhhc--ccc--ccCCCCccceeeccccccCCCCCCCccccccCCCCcCccCCCCccCCCCeEEEE
Q 020509 37 GICNVRMSGEELLSRLLDR--KWA--LTSPDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVV 112 (325)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~r--~w~--lp~p~~~I~~~~l~~~~~~~~~g~~~pi~~l~~~tp~l~~~~Ls~~~G~~l~IK 112 (325)
|.--=+++||.|+..|.+= .+. ..+|.. ..++.-++. +|.|+||||.+++++++. .|.+||+|
T Consensus 225 ~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~grpTPL~~~~~Ls~~---------~G~~IylK 291 (610)
T PRK13803 225 GTFGGAYVPETLMANLQELQESYTKIIKSNEF-QKTFKRLLQ---NYAGRPTPLTEAKRLSDI---------YGARIYLK 291 (610)
T ss_pred cCcCCEeCCHHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHH---HhCCCCCcceeHHHHHHh---------hCCEEEEE
Confidence 4444578999999988762 222 244444 334444443 488888888888776543 36799999
Q ss_pred ecCCCCCCCCChhHhhHHhhHHHhhhCCCCeEEE-eCcccchHHHHHHHHHHHhCCeEEEEeccccCCccchhhHHHHhC
Q 020509 113 RDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVT-CGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIY 191 (325)
Q Consensus 113 RDDL~h~~lgGNK~RKLeylL~dA~~~G~~~LVT-~GG~QSNH~~AtAaaAa~lGLkcvlvlrge~~~~~tGN~ll~~Ll 191 (325)
|||++|+ |.+|.|-.-..+..|+++|++++|+ +|++ ||++|||++|+++|++|+++|...+..++..|+.+|+++
T Consensus 292 ~E~lnpt--GS~K~r~al~~~~~a~~~g~~~vi~e~gsG--nhG~A~A~~aa~~Gl~~~I~m~~~~~~~~~~nv~~m~~~ 367 (610)
T PRK13803 292 REDLNHT--GSHKINNALGQALLAKRMGKTRIIAETGAG--QHGVATATACALFGLKCTIFMGEEDIKRQALNVERMKLL 367 (610)
T ss_pred eCCCCCc--ccHHHHHHHHHHHHHHHcCCCEEEEecChH--HHHHHHHHHHHHcCCcEEEEEeCCcccchhhHHHHHHHC
Confidence 9999996 4555555444444567999998887 6665 499999999999999999999877666678899999999
Q ss_pred C-eEEEECCCCccchHHHHHHHHHHh---------cccc-------cchhhHHHHHHHHHHHhhhhhccccccchhhhhh
Q 020509 192 G-KVTYVPRTHYAHRIEMLKSYANLV---------AGNN-------GDVVWCNEIFEASLTAQKSRASCLGQMDAHKGID 254 (325)
Q Consensus 192 G-~V~~V~r~~y~~kda~~e~~~~~~---------~Gas-------G~vr~~~eI~~qe~~~q~~~~~~~~~~d~~~~l~ 254 (325)
| +|+.|+.+..+++++++++..+|+ .|+. -+++.+|++++.|+.+|+.+ ..+
T Consensus 368 GA~Vi~v~~~~~~~~~a~~~a~~~~~~~~~~~~y~~~~~~g~~p~p~~v~~~~~tig~Ei~~Q~~~-----------~~g 436 (610)
T PRK13803 368 GANVIPVLSGSKTLKDAVNEAIRDWVASVPDTHYLIGSAVGPHPYPEMVAYFQSVIGEEAKEQLKE-----------QTG 436 (610)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEeCCcCCCCCcHHHHHHHhhHHHHHHHHHHHH-----------hhC
Confidence 9 999999876667777766666652 2221 24567899999999999865 345
Q ss_pred ccCCcEEEEeCCCcchhhhhhhc
Q 020509 255 NCRKKVLIVNEGAGDAVALLVLI 277 (325)
Q Consensus 255 ~~g~~~y~ip~GGSnaiG~lGyi 277 (325)
..++.++++.|||||+.|++-++
T Consensus 437 ~~pD~vV~~vGgGg~~~Gi~~~f 459 (610)
T PRK13803 437 KLPDAIIACVGGGSNAIGIFYHF 459 (610)
T ss_pred CCCCEEEEEeCcCHhHHHHHHHH
Confidence 67999999999999999998666
No 14
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=99.89 E-value=5.9e-23 Score=214.80 Aligned_cols=217 Identities=17% Similarity=0.166 Sum_probs=165.9
Q ss_pred cccccccChHHHHHHHhhc--cc--cccCCCCccceeeccccccCCCCCCCccccccCCCCcCccCCCCccCC--CCeEE
Q 020509 37 GICNVRMSGEELLSRLLDR--KW--ALTSPDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDE--DRCFY 110 (325)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~r--~w--~lp~p~~~I~~~~l~~~~~~~~~g~~~pi~~l~~~tp~l~~~~Ls~~~--G~~l~ 110 (325)
|.--=+++||.|+..|.+= .+ ...+|.+ ...+..++. +|.||+||+.+++++++.+ ++.. |.+||
T Consensus 280 g~~gg~~~pe~l~~~~~~l~~~~~~~~~~~~f-~~e~~~~~~---~~iGrpTPL~~~~~Ls~~l-----~~~~G~g~~Iy 350 (695)
T PRK13802 280 GQFGGRYVPEALITALDELERVYTQAKADPEF-HKELATLNQ---RYVGRPSPLTEAPRFAERV-----KEKTGLDARVF 350 (695)
T ss_pred CCcCCEeCCHHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHH---hcCCCCCceeEchhhhhhh-----HhhcCCCceEE
Confidence 3444578999999988762 22 1234444 344455554 5999999999999876532 2223 37999
Q ss_pred EEecCCCCCCCCChhHhhHHhhHHHhhhCCCCe-EEEeCcccchHHHHHHHHHHHhCCeEEEEeccccCCccchhhHHHH
Q 020509 111 VVRDDLLHPLVNGNKARKMDALLPLLEDHIVTD-LVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLIST 189 (325)
Q Consensus 111 IKRDDL~h~~lgGNK~RKLeylL~dA~~~G~~~-LVT~GG~QSNH~~AtAaaAa~lGLkcvlvlrge~~~~~tGN~ll~~ 189 (325)
+||||++|+ |++|.|-.-+.+..|+++|+++ |+++|++| |++|+|++|+++|++|++||...+...+..|+.+|+
T Consensus 351 lK~E~lNpT--GS~KdR~Al~~i~~A~~~G~~~~IvetssGN--hG~AlA~aaA~~Gl~c~Ivmp~~~~~~~~~nv~~mr 426 (695)
T PRK13802 351 LKREDLNHT--GAHKINNALGQALLVKRMGKTRVIAETGAGQ--HGVATATVCAMLGLKCRIYMGQIDARRQALNVARMR 426 (695)
T ss_pred EEEccCCCc--CCcHHHHHHHHHHHHHHcCCCCEEEEECcHH--HHHHHHHHHHHcCCCEEEEEeCCcccccHHHHHHHH
Confidence 999999996 8899998888888899999875 55689888 999999999999999999998765556788999999
Q ss_pred hCC-eEEEECCCCccchHHHHHHHHHHh---------cccc-c------chhhHHHHHHHHHHHhhhhhccccccchhhh
Q 020509 190 IYG-KVTYVPRTHYAHRIEMLKSYANLV---------AGNN-G------DVVWCNEIFEASLTAQKSRASCLGQMDAHKG 252 (325)
Q Consensus 190 LlG-~V~~V~r~~y~~kda~~e~~~~~~---------~Gas-G------~vr~~~eI~~qe~~~q~~~~~~~~~~d~~~~ 252 (325)
++| +|+.|+.++.++++++.++..+|. .|.. | +++.+|++++.|+.+|+.+ .
T Consensus 427 ~lGAeVi~v~~g~~~l~~Ai~ea~~~~~~~~~~~~y~i~~~~g~~P~p~~v~agq~tiG~EI~eQ~~~-----------~ 495 (695)
T PRK13802 427 MLGAEVVEVTLGDRILKDAINEALRDWVTNVKDTHYLLGTVAGPHPFPAMVRDFQKIIGEEAKQQLQD-----------W 495 (695)
T ss_pred HcCCEEEEECCCCCcHHHHHHHHHHHHHHhcCCceEeecccCCCCCcHHHHHHHHHHHHHHHHHHHhc-----------c
Confidence 999 999998766556666655544443 1111 2 3789999999999988754 2
Q ss_pred hh-ccCCcEEEEeCCCcchhhhhhhc
Q 020509 253 ID-NCRKKVLIVNEGAGDAVALLVLI 277 (325)
Q Consensus 253 l~-~~g~~~y~ip~GGSnaiG~lGyi 277 (325)
.+ ..++.++++.|||||..|++-++
T Consensus 496 ~g~~~pD~VVa~VGgGg~~~Gi~~~f 521 (695)
T PRK13802 496 YGIDHPDAICACVGGGSNAIGVMNAF 521 (695)
T ss_pred cCCCCCCEEEEcCCchHHHHHHHHHH
Confidence 23 27899999999999999998776
No 15
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=99.76 E-value=1.4e-17 Score=155.57 Aligned_cols=165 Identities=10% Similarity=0.050 Sum_probs=113.4
Q ss_pred CcCccCCCCccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHhhhCCC----CeEEEeCcccchHHHHHHHHHHHhCCe
Q 020509 93 CPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSAHATAVAVSCAERGLK 168 (325)
Q Consensus 93 tp~l~~~~Ls~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G~----~~LVT~GG~QSNH~~AtAaaAa~lGLk 168 (325)
||+...++|++..|++||+|||+++++ |+||.|++.++|.+|++.|+ ++||+ +..+||++|+|++|+++|++
T Consensus 3 TPl~~~~~l~~~~g~~i~~K~E~~~pt--gS~K~R~a~~~l~~a~~~g~~~~~~~vv~--~SsGN~g~alA~~a~~~G~~ 78 (291)
T cd01561 3 TPLVRLNRLSPGTGAEIYAKLEFFNPG--GSVKDRIALYMIEDAEKRGLLKPGTTIIE--PTSGNTGIGLAMVAAAKGYR 78 (291)
T ss_pred CCEEEccccCCCCCCeEEEEecccCCC--CcchHHHHHHHHHHHHHcCCCCCCCEEEE--eCCChHHHHHHHHHHHcCCe
Confidence 444444445555678999999999775 99999999999999999998 77877 57899999999999999999
Q ss_pred EEEEeccccCCccchhhHHHHhCC-eEEEECCCCc-cchHH--HHHHHHH----Hh--cccccchhhH--HHHHHHHHHH
Q 020509 169 SHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHY-AHRIE--MLKSYAN----LV--AGNNGDVVWC--NEIFEASLTA 236 (325)
Q Consensus 169 cvlvlrge~~~~~tGN~ll~~LlG-~V~~V~r~~y-~~kda--~~e~~~~----~~--~GasG~vr~~--~eI~~qe~~~ 236 (325)
|++|+.... ...+...++.+| +|++++...+ ...+. ..+.+.+ ++ .+......|. .+-++.|+.+
T Consensus 79 ~~i~vp~~~---~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~g~~~t~~~Ei~~ 155 (291)
T cd01561 79 FIIVMPETM---SEEKRKLLRALGAEVILTPEAEADGMKGAIAKARELAAETPNAFWLNQFENPANPEAHYETTAPEIWE 155 (291)
T ss_pred EEEEECCCC---CHHHHHHHHHcCCEEEEeCCCCcCCHHHHHHHHHHHHhhCCCcEEecCCCCchHHHHHHHHHHHHHHH
Confidence 999997543 467888899999 9999987542 11222 1111211 11 1111111111 2244555533
Q ss_pred hhhhhccccccchhhhhhccCCcEEEEeCCCcchhhhhhhccc
Q 020509 237 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLVLIPG 279 (325)
Q Consensus 237 q~~~~~~~~~~d~~~~l~~~g~~~y~ip~GGSnaiG~lGyi~~ 279 (325)
|+ ...++.+++..|||++..|+.-+++.
T Consensus 156 ql---------------~~~~d~vv~~~G~Gg~~~Gi~~~~~~ 183 (291)
T cd01561 156 QL---------------DGKVDAFVAGVGTGGTITGVARYLKE 183 (291)
T ss_pred Hc---------------CCCCCEEEEeCChHHHHHHHHHHHHH
Confidence 33 23577777777778888888776654
No 16
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=99.76 E-value=1.1e-17 Score=163.91 Aligned_cols=210 Identities=16% Similarity=0.144 Sum_probs=130.8
Q ss_pred ccChHHHHHHHhh--ccccccCCCCccceeeccccccCCCCCCCccccccCCCCcCccCCCCccCCC-CeEEEEecCCCC
Q 020509 42 RMSGEELLSRLLD--RKWALTSPDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDED-RCFYVVRDDLLH 118 (325)
Q Consensus 42 ~~~~~~~~~~~~~--r~w~lp~p~~~I~~~~l~~~~~~~~~g~~~pi~~l~~~tp~l~~~~Ls~~~G-~~l~IKRDDL~h 118 (325)
+|.||+++..|.+ +.|.--.-+-+..+....+- ..|.++ +||++..++|++..| .+||+||||+++
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~---------~TPL~~~~~l~~~~g~~~iy~K~E~~np 77 (385)
T TIGR00263 9 QYVPETLMPALEELEAAFEDAKADPAFWAELNELL--RNYAGR---------PTPLTFAPNLTEALGGAKIYLKREDLNH 77 (385)
T ss_pred EeCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH--HHhCCC---------CCCceehHHHHHHhCCCeEEEEeCCCCC
Confidence 5778888877755 34432111111222211110 113444 444444445555555 799999999997
Q ss_pred CCCCChhHhhHHhhHHHhhhCCCCeEEE-eCcccchHHHHHHHHHHHhCCeEEEEeccccCCccchhhHHHHhCC-eEEE
Q 020509 119 PLVNGNKARKMDALLPLLEDHIVTDLVT-CGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTY 196 (325)
Q Consensus 119 ~~lgGNK~RKLeylL~dA~~~G~~~LVT-~GG~QSNH~~AtAaaAa~lGLkcvlvlrge~~~~~tGN~ll~~LlG-~V~~ 196 (325)
+ |..|.|-.-..+..|++.|++++|+ +|+++ |++|+|++|+++|++|+++|...+......|+.+++.+| +|+.
T Consensus 78 t--GS~K~R~a~~~~~~a~~~g~~~vi~e~ssGN--~G~alA~~a~~~Gl~~~Iv~p~~~~~~~~~~~~~~~~~GA~Vv~ 153 (385)
T TIGR00263 78 T--GAHKINNALGQALLAKRMGKKRIIAETGAGQ--HGVATATAAALLGLDCEVYMGAEDVERQKPNVFRMELLGAKVIP 153 (385)
T ss_pred C--ccchHHHHHHHHHHHHHcCCCEEEEEcCcHH--HHHHHHHHHHHcCCCEEEEecCCcccccchHHHHHHHcCCEEEE
Confidence 5 4456665555555567778888776 66664 999999999999999999997643333457899999999 9999
Q ss_pred ECCCCccchHHHHHHHHHH--------h-ccc----ccc---hhhHHHHHHHHHHHhhhhhccccccchhhhhhccCCcE
Q 020509 197 VPRTHYAHRIEMLKSYANL--------V-AGN----NGD---VVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKV 260 (325)
Q Consensus 197 V~r~~y~~kda~~e~~~~~--------~-~Ga----sG~---vr~~~eI~~qe~~~q~~~~~~~~~~d~~~~l~~~g~~~ 260 (325)
++.+.....+++.+...++ + .+. ..+ ++..+..++.|+.+|+.+ .....++.+
T Consensus 154 v~~~~~~~~~a~~~~~~~~~~~~~~~~y~~~~~~~~~p~~~~~~~~~~t~g~Ei~~Ql~~-----------~~~~~pD~v 222 (385)
T TIGR00263 154 VTSGSGTLKDAVNEALRDWVTSVDDTHYVLGSAVGPHPFPTMVRDFQSVIGEEAKEQILE-----------QEGRLPDAV 222 (385)
T ss_pred ECCCCCCHHHHHHHHHHHHHHhcCCceEEeCCcCCCCCchHHHHHHhhHHHHHHHHHHHh-----------hhCCCCCEE
Confidence 9754222233322222221 1 111 112 345567788888777643 122357888
Q ss_pred EEEeCCCcchhhhh-hhc
Q 020509 261 LIVNEGAGDAVALL-VLI 277 (325)
Q Consensus 261 y~ip~GGSnaiG~l-Gyi 277 (325)
++..|||++..|+. |+.
T Consensus 223 v~~vG~Gg~~~Gv~~~~~ 240 (385)
T TIGR00263 223 IACVGGGSNAIGIFYAFI 240 (385)
T ss_pred EEEeCchHHHHHHHHHHh
Confidence 88889999999995 453
No 17
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=99.73 E-value=1.8e-17 Score=152.67 Aligned_cols=92 Identities=23% Similarity=0.274 Sum_probs=80.4
Q ss_pred ccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHhhhCCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEeccccCCcc
Q 020509 102 MRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQIL 181 (325)
Q Consensus 102 s~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G~~~LVT~GG~QSNH~~AtAaaAa~lGLkcvlvlrge~~~~~ 181 (325)
++..+.+||+||||++ | .|+||.|++.++|.+|+++|.++| +++.++||+.|+|++|+++|++|++++... ..
T Consensus 19 ~~~~~~~i~~K~E~~~-p-tgs~K~R~a~~~l~~a~~~~~~~v--v~assGN~g~a~A~~a~~~g~~~~i~~p~~---~~ 91 (306)
T PF00291_consen 19 SELGGANIYLKREDLN-P-TGSFKDRGAYYLLSRAKEKGGRTV--VGASSGNHGRALAYAAARLGLKCTIVVPED---VS 91 (306)
T ss_dssp HHCTTSEEEEEEGGGS-T-TSBTHHHHHHHHHHHHHHTTTSEE--EEESSSHHHHHHHHHHHHHTCEEEEEEETT---SH
T ss_pred hhccCCeEEEEECCCC-C-cCCcccccchhhhhhcccccccee--eeeccCCceehhhhhhhhccccceeeeccc---cc
Confidence 4455889999999999 5 689999999999999999999998 667789999999999999999999999432 34
Q ss_pred chhhHHHHhCC-eEEEECCC
Q 020509 182 TGYNLISTIYG-KVTYVPRT 200 (325)
Q Consensus 182 tGN~ll~~LlG-~V~~V~r~ 200 (325)
..|..+++.+| +|+.++..
T Consensus 92 ~~~~~~~~~~Ga~v~~~~~~ 111 (306)
T PF00291_consen 92 PEKLKQMRALGAEVILVPGD 111 (306)
T ss_dssp HHHHHHHHHTTCEEEEESST
T ss_pred cccccceeeecceEEEcccc
Confidence 57888999999 99988764
No 18
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=99.73 E-value=1.1e-16 Score=144.98 Aligned_cols=166 Identities=14% Similarity=0.098 Sum_probs=114.3
Q ss_pred cCccCCCCccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHhhhCC---CCeEEEeCcccchHHHHHHHHHHHhCCeEE
Q 020509 94 PFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHI---VTDLVTCGGCQSAHATAVAVSCAERGLKSH 170 (325)
Q Consensus 94 p~l~~~~Ls~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G---~~~LVT~GG~QSNH~~AtAaaAa~lGLkcv 170 (325)
|+...+++++..+.+||+||||++++ |++|.|++.+++..+++.| .++||+..+ +||++|+|++|+++|++|+
T Consensus 2 Pl~~~~~l~~~~~~~l~~K~e~~~pt--gS~K~R~a~~~l~~a~~~g~~~~~~vv~~ss--GN~g~alA~~a~~~g~~~~ 77 (244)
T cd00640 2 PLVRLKRLSKLGGANIYLKLEFLNPT--GSFKDRGALNLILLAEEEGKLPKGVIIESTG--GNTGIALAAAAARLGLKCT 77 (244)
T ss_pred CeeEccccccccCCEEEEEecccCCc--CCcHHHHHHHHHHHHHHcCCCCCCEEEEeCC--cHHHHHHHHHHHHcCCCEE
Confidence 44444444444578999999999876 8999999999999999999 688888755 7999999999999999999
Q ss_pred EEeccccCCccchhhHHHHhCC-eEEEECCCCccchHHHHHHHHH---Hh---cccccchhhHHHHHHHHHHHhhhhhcc
Q 020509 171 LLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYAN---LV---AGNNGDVVWCNEIFEASLTAQKSRASC 243 (325)
Q Consensus 171 lvlrge~~~~~tGN~ll~~LlG-~V~~V~r~~y~~kda~~e~~~~---~~---~GasG~vr~~~eI~~qe~~~q~~~~~~ 243 (325)
+++.... ...|..+++.+| +|+.++...........+...+ ++ .+.+-.....+..++.|+.+|+..
T Consensus 78 v~~p~~~---~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~g~~~~~~Ei~~q~~~--- 151 (244)
T cd00640 78 IVMPEGA---SPEKVAQMRALGAEVVLVPGDFDDAIALAKELAEEDPGAYYVNQFDNPANIAGQGTIGLEILEQLGG--- 151 (244)
T ss_pred EEECCCC---CHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHhCCCCEecCCCCCHHHHHHHHHHHHHHHHHcCC---
Confidence 9997654 567888899999 9999987622111112222211 11 112222223334444555444422
Q ss_pred ccccchhhhhhccCCcEEEEeCCCcchhhhhhhcccc
Q 020509 244 LGQMDAHKGIDNCRKKVLIVNEGAGDAVALLVLIPGS 280 (325)
Q Consensus 244 ~~~~d~~~~l~~~g~~~y~ip~GGSnaiG~lGyi~~~ 280 (325)
..++.+++..|+|++..|+.-++.-.
T Consensus 152 -----------~~~d~ivvp~GtGg~~~G~~~~~~~~ 177 (244)
T cd00640 152 -----------QKPDAVVVPVGGGGNIAGIARALKEL 177 (244)
T ss_pred -----------CCCCEEEEecCccHHHHHHHHHHHHh
Confidence 15777777777788888887766533
No 19
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=99.73 E-value=9.8e-17 Score=155.82 Aligned_cols=202 Identities=17% Similarity=0.163 Sum_probs=126.0
Q ss_pred HHHHHHHhhcc--ccccCCCCccceeeccccccCCCCCCCccccccCCCCcCccCCCCccCCCCeEEEEecCCCCCCCCC
Q 020509 46 EELLSRLLDRK--WALTSPDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNG 123 (325)
Q Consensus 46 ~~~~~~~~~r~--w~lp~p~~~I~~~~l~~~~~~~~~g~~~pi~~l~~~tp~l~~~~Ls~~~G~~l~IKRDDL~h~~lgG 123 (325)
||+-+.+..|+ |..|+|+.++ ++ .+.+.+|||..++++++.++ +.+||+||||++++ |+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~------~~---~~~~~~TPL~~l~~l~~~~g--------~~~l~~K~E~~npt--gS 64 (365)
T cd06446 4 EELEQEFSKERYDPDFPEELREL------YK---DYVGRPTPLYRAKRLSEYLG--------GAKIYLKREDLNHT--GA 64 (365)
T ss_pred HHHHHHHHHhhcCcccHHHHHHH------hh---ccCCCCCCceehHHHHHhhC--------CceEEEEeccCCCc--cc
Confidence 56666666654 5556554422 11 12344556655555443332 57999999999885 56
Q ss_pred hhHhhHHhhHHHhhhCCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEeccccCCccchhhHHHHhCC-eEEEECCCCc
Q 020509 124 NKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHY 202 (325)
Q Consensus 124 NK~RKLeylL~dA~~~G~~~LVT~GG~QSNH~~AtAaaAa~lGLkcvlvlrge~~~~~tGN~ll~~LlG-~V~~V~r~~y 202 (325)
.|.|-.-..+..|.++|++.+|+..+. .||++|+|++|+++|++|++++....+....+|..+++.+| +|+.++....
T Consensus 65 ~K~R~a~~~~~~a~~~g~~~vv~~~ss-GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~~~~GAeV~~~~~~~~ 143 (365)
T cd06446 65 HKINNALGQALLAKRMGKKRVIAETGA-GQHGVATATACALFGLECEIYMGAVDVERQPLNVFRMELLGAEVVPVPSGSG 143 (365)
T ss_pred hhHHHHHHHHHHHHHcCCCeEEEecCc-hHHHHHHHHHHHHhCCCeEEEEcCCccccccchHHHHHHCCCEEEEeCCCCC
Confidence 777766666666779999999995433 67999999999999999999998654434457888999999 9999986432
Q ss_pred cchHHHHHHHHHHh---------c----ccccc---hhhHHHHHHHHHHHhhhhhccccccchhhhhhccCCcEEEEeCC
Q 020509 203 AHRIEMLKSYANLV---------A----GNNGD---VVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEG 266 (325)
Q Consensus 203 ~~kda~~e~~~~~~---------~----GasG~---vr~~~eI~~qe~~~q~~~~~~~~~~d~~~~l~~~g~~~y~ip~G 266 (325)
...+++.++...+. . |...+ ++.-+.-++.|+.+|+.+ .-+..++.+++..||
T Consensus 144 ~~~~~~~~a~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ag~~t~~~EI~~Q~~~-----------~~~~~~D~vv~~vG~ 212 (365)
T cd06446 144 TLKDAISEAIRDWVTNVEDTHYLLGSVVGPHPYPNMVRDFQSVIGEEAKKQILE-----------KEGELPDVVIACVGG 212 (365)
T ss_pred cHHHHHHHHHHHHHhccCCceEecccccCCCCchHHHHHhhhHHHHHHHHHHHH-----------hcCCCCCEEEEecCc
Confidence 22222222221111 0 11111 122234445666655533 011347777777777
Q ss_pred Ccchhhhh-hhcc
Q 020509 267 AGDAVALL-VLIP 278 (325)
Q Consensus 267 GSnaiG~l-Gyi~ 278 (325)
|++..|+. |+..
T Consensus 213 GGt~~Gi~~g~~~ 225 (365)
T cd06446 213 GSNAAGLFYPFIN 225 (365)
T ss_pred cHHHHHHHHHHHh
Confidence 88877776 4543
No 20
>PRK06381 threonine synthase; Validated
Probab=99.72 E-value=5.7e-17 Score=153.45 Aligned_cols=165 Identities=13% Similarity=0.114 Sum_probs=112.5
Q ss_pred CcCccCCCCccCCC-CeEEEEecCCCCCCCCChhHhhHHhhHHHhhhCCCCeEEEeCcccchHHHHHHHHHHHhCCeEEE
Q 020509 93 CPFLGDDMIMRDED-RCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHL 171 (325)
Q Consensus 93 tp~l~~~~Ls~~~G-~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G~~~LVT~GG~QSNH~~AtAaaAa~lGLkcvl 171 (325)
||++..++|++..| .+||+|+|++++ .|++|.|++.+.+.+|+++|+++||+. ...||++|+|++|+.+|++|++
T Consensus 16 TPL~~~~~l~~~~G~~~i~~K~E~~np--tGS~K~R~a~~~l~~a~~~g~~~lv~a--SsGN~g~alA~~aa~~G~~~~i 91 (319)
T PRK06381 16 TPLLRARKLEEELGLRKIYLKFEGANP--TGTQKDRIAEAHVRRAMRLGYSGITVG--TCGNYGASIAYFARLYGLKAVI 91 (319)
T ss_pred CceeEhHhhHHhcCCceEEEEecCCCC--ccCcHHHHHHHHHHHHHHcCCCEEEEe--CCcHHHHHHHHHHHHcCCcEEE
Confidence 34444444444445 589999999987 489999999999999999999999951 1139999999999999999999
Q ss_pred EeccccCCccchhhHHHHhCC-eEEEECCCCccchHHHHHHHHH---Hh---ccc-c-cchhhHHHHHHHHHHHhhhhhc
Q 020509 172 LLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYAN---LV---AGN-N-GDVVWCNEIFEASLTAQKSRAS 242 (325)
Q Consensus 172 vlrge~~~~~tGN~ll~~LlG-~V~~V~r~~y~~kda~~e~~~~---~~---~Ga-s-G~vr~~~eI~~qe~~~q~~~~~ 242 (325)
++.... ...++.+++.+| +|+.++.. +....+..+.+.+ ++ .+. + -.....++-++.|+.+|+
T Consensus 92 vvp~~~---~~~~~~~l~~~GA~V~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~t~a~Ei~~ql---- 163 (319)
T PRK06381 92 FIPRSY---SNSRVKEMEKYGAEIIYVDGK-YEEAVERSRKFAKENGIYDANPGSVNSVVDIEAYSAIAYEIYEAL---- 163 (319)
T ss_pred EECCCC---CHHHHHHHHHcCCEEEEcCCC-HHHHHHHHHHHHHHcCcEecCCCCCCcchHhhhHHHHHHHHHHHh----
Confidence 997643 356777899999 99999864 3222111111111 11 111 1 112223444555554333
Q ss_pred cccccchhhhhhccCCcEEEEeCCCcchhhhhhhcccc
Q 020509 243 CLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLVLIPGS 280 (325)
Q Consensus 243 ~~~~~d~~~~l~~~g~~~y~ip~GGSnaiG~lGyi~~~ 280 (325)
+..++.+++..|+|++..|+..+++..
T Consensus 164 -----------~~~~D~vv~~vGtGgt~~Gl~~~~~~~ 190 (319)
T PRK06381 164 -----------GDVPDAVAVPVGNGTTLAGIYHGFRRL 190 (319)
T ss_pred -----------CCCCCEEEEcCCccHHHHHHHHHHHHH
Confidence 235778888888888999987776543
No 21
>PRK06721 threonine synthase; Reviewed
Probab=99.70 E-value=4.2e-16 Score=150.75 Aligned_cols=104 Identities=13% Similarity=0.156 Sum_probs=86.3
Q ss_pred CCCcCccCCCCccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHhhhCCCCeEEEeCcccchHHHHHHHHHHHhCCeEE
Q 020509 91 NTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSH 170 (325)
Q Consensus 91 ~~tp~l~~~~Ls~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G~~~LVT~GG~QSNH~~AtAaaAa~lGLkcv 170 (325)
.+||++..+++++..|++||+|+|++++ .|++|.|+..+.+.+|+++|.++||+. ..+||++|+|++|+.+|++|+
T Consensus 27 G~TPl~~l~~l~~~~g~~i~~K~E~~np--tGS~KdR~a~~~i~~a~~~g~~~vV~a--SsGN~G~alA~~aa~~G~~~~ 102 (352)
T PRK06721 27 GNTPLIPLLNISKQLGIQLYGKYEGANP--TGSFKDRGMVMAVAKAKEEGSEAIICA--STGNTSASAAAYAARLGMKCI 102 (352)
T ss_pred CCCCeeEchhhHHHhCCeEEEEecCCCC--ccchHHHHHHHHHHHHHHCCCCEEEEE--CCcHHHHHHHHHHHHCCCcEE
Confidence 4455555555555557899999999987 489999999999999999999999996 578999999999999999999
Q ss_pred EEeccccCCccchhhHHHHhCC-eEEEECCC
Q 020509 171 LLLRGEQPQILTGYNLISTIYG-KVTYVPRT 200 (325)
Q Consensus 171 lvlrge~~~~~tGN~ll~~LlG-~V~~V~r~ 200 (325)
++|.... ....+..+++.+| +|+.++.+
T Consensus 103 vvvp~~~--~~~~k~~~~~~~GA~V~~~~~~ 131 (352)
T PRK06721 103 IVIPEGK--IAHGKLAQAVAYGAEIISIEGN 131 (352)
T ss_pred EEECCCC--CCHHHHHHHHHcCCEEEEECCC
Confidence 9996532 2356788899999 99999853
No 22
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=99.69 E-value=6.2e-16 Score=146.25 Aligned_cols=167 Identities=17% Similarity=0.203 Sum_probs=113.5
Q ss_pred ccccCCCCcCccCCCCccCCC-CeEEEEecCCCCCCCCChhHhhHHhhHHHhhhCCCCeEEEeCcccchHHHHHHHHHHH
Q 020509 86 ISFLNNTCPFLGDDMIMRDED-RCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAE 164 (325)
Q Consensus 86 i~~l~~~tp~l~~~~Ls~~~G-~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G~~~LVT~GG~QSNH~~AtAaaAa~ 164 (325)
+.+...+||++..++|++..| .+||+|+||+++ .|++|.|++.+++.+|.+.|+++||+. ...||++|+|++|+.
T Consensus 16 ~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~np--tGS~K~R~a~~~l~~a~~~g~~~vv~~--SsGN~g~alA~~a~~ 91 (324)
T cd01563 16 VSLGEGNTPLVRAPRLGERLGGKNLYVKDEGLNP--TGSFKDRGMTVAVSKAKELGVKAVACA--STGNTSASLAAYAAR 91 (324)
T ss_pred ccCCCCCCceeechhhHhhcCCCceEEEecCCCC--cccHHHhhHHHHHHHHHHcCCCEEEEe--CCCHHHHHHHHHHHH
Confidence 444444555555555555554 799999999976 588999999999999999999999996 345999999999999
Q ss_pred hCCeEEEEeccccCCccchhhHHHHhCC-eEEEECCCCccchHHHHHHHHH----Hh------cccccchhhHHHHHHHH
Q 020509 165 RGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYAN----LV------AGNNGDVVWCNEIFEAS 233 (325)
Q Consensus 165 lGLkcvlvlrge~~~~~tGN~ll~~LlG-~V~~V~r~~y~~kda~~e~~~~----~~------~GasG~vr~~~eI~~qe 233 (325)
+|++|++++.... ...+..+++.+| +|+.++.. +....+..+.+.+ ++ .+..|+...+.||.+
T Consensus 92 ~G~~~~ivvp~~~---~~~k~~~l~~~GA~Vi~~~~~-~~~~~~~a~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~-- 165 (324)
T cd01563 92 AGIKCVVFLPAGK---ALGKLAQALAYGATVLAVEGN-FDDALRLVRELAEENWIYLSNSLNPYRLEGQKTIAFEIAE-- 165 (324)
T ss_pred cCCceEEEEeCCC---CHHHHHHHHHcCCEEEEECCc-HHHHHHHHHHHHHhcCeeccCCCCcceecchhhhHHHHHH--
Confidence 9999999997543 456778889999 99999863 3222222111111 11 111244444444433
Q ss_pred HHHhhhhhccccccchhhhhhccCCcEEEEeCCCcchhhhhhhccc
Q 020509 234 LTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLVLIPG 279 (325)
Q Consensus 234 ~~~q~~~~~~~~~~d~~~~l~~~g~~~y~ip~GGSnaiG~lGyi~~ 279 (325)
|+. +..++.+++..|+|++..|+.-++..
T Consensus 166 ---q~~--------------~~~~d~vv~~vGtGg~~~G~~~~~k~ 194 (324)
T cd01563 166 ---QLG--------------WEVPDYVVVPVGNGGNITAIWKGFKE 194 (324)
T ss_pred ---HcC--------------CCCCCEEEEecCCcHHHHHHHHHHHH
Confidence 321 02366777777777788887665543
No 23
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=99.69 E-value=4.8e-16 Score=155.16 Aligned_cols=173 Identities=14% Similarity=0.154 Sum_probs=119.5
Q ss_pred CCCcCccCCCCccCCC--CeEEEEecCCCCCCCCChhHhhHHhhHHHhhhCCCCeEEE-eCcccchHHHHHHHHHHHhCC
Q 020509 91 NTCPFLGDDMIMRDED--RCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVT-CGGCQSAHATAVAVSCAERGL 167 (325)
Q Consensus 91 ~~tp~l~~~~Ls~~~G--~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G~~~LVT-~GG~QSNH~~AtAaaAa~lGL 167 (325)
++||++..++|++..| .+||+|+||++++ |++|.|..-..+..|++.|+++++| +|++| |+.|+|++|+.+|+
T Consensus 76 ~~TPL~~~~~L~~~lg~~~~Iy~K~E~~nPt--GS~K~R~A~~~a~~a~~~G~~~~vtetgsGN--~G~alA~aaa~~Gl 151 (427)
T PRK12391 76 RPTPLIRARRLEKALGTPAKIYYKYEGVSPT--GSHKPNTAVAQAYYNKKEGIKRLTTETGAGQ--WGSALALACALFGL 151 (427)
T ss_pred CCCCeeEchhhHhhhCCCceEEEEEcCCCCC--CChHHHHHHHHHHHHHHCCCCEEEEccCchH--HHHHHHHHHHHcCC
Confidence 4555555555555444 6999999999874 6899999888888889999999998 57755 99999999999999
Q ss_pred eEEEEeccccCCccchhhHHHHhCC-eEEEECCCCcc---------------chHHHHHHHHHH-------h-cccc-cc
Q 020509 168 KSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYA---------------HRIEMLKSYANL-------V-AGNN-GD 222 (325)
Q Consensus 168 kcvlvlrge~~~~~tGN~ll~~LlG-~V~~V~r~~y~---------------~kda~~e~~~~~-------~-~Gas-G~ 222 (325)
+|++||.............+++++| +|+.++....+ +..++.++.... + .+.. --
T Consensus 152 ~~~V~mp~~s~~~k~~r~~~mr~~GA~Vi~~~~~~~~~~~~~~~~~~~~~gsl~~ai~~A~e~a~~~~~~~y~~~s~~~~ 231 (427)
T PRK12391 152 ECTVFMVRVSYEQKPYRRSLMETYGAEVIPSPSDLTEAGRKILAEDPDHPGSLGIAISEAVEDAAKRPDTKYALGSVLNH 231 (427)
T ss_pred cEEEEEecCCcccCHHHHHHHHHCCCEEEEECCchhhhhhhhhhcCccccccHHHHHHHHHHHHHhCCCcEEEcCCCCcH
Confidence 9999997532222223456899999 99998753211 001222222111 1 1221 12
Q ss_pred hhhHHHHHHHHHHHhhhhhccccccchhhhhhccCCcEEEEeCCCcchhhhh-hhccc
Q 020509 223 VVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALL-VLIPG 279 (325)
Q Consensus 223 vr~~~eI~~qe~~~q~~~~~~~~~~d~~~~l~~~g~~~y~ip~GGSnaiG~l-Gyi~~ 279 (325)
+..-+.+++.|+.+|+.. .+..++.++++.|||||..|+. ++++.
T Consensus 232 ~~~~~~~ig~Ei~~Ql~~------------~g~~pD~Vv~~vG~Gg~~aGi~~~f~~~ 277 (427)
T PRK12391 232 VLLHQTVIGLEAKKQLEL------------AGEYPDVVIGCVGGGSNFAGLAFPFLGD 277 (427)
T ss_pred HHhhHHHHHHHHHHHHHh------------cCCCCCEEEEecCchHHHHHHHHHHHHH
Confidence 334567788888777633 3456889999999999999987 57654
No 24
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=99.68 E-value=8.8e-16 Score=152.87 Aligned_cols=173 Identities=13% Similarity=0.110 Sum_probs=118.7
Q ss_pred CCCcCccCCCCccCCC--CeEEEEecCCCCCCCCChhHhhHHhhHHHhhhCCCCeEEEe-CcccchHHHHHHHHHHHhCC
Q 020509 91 NTCPFLGDDMIMRDED--RCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTC-GGCQSAHATAVAVSCAERGL 167 (325)
Q Consensus 91 ~~tp~l~~~~Ls~~~G--~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G~~~LVT~-GG~QSNH~~AtAaaAa~lGL 167 (325)
++||++..++|++.+| .+||+|+||++++ |++|.|-..+.+..|++.|++++||. |++ ||+.|+|++|+.+|+
T Consensus 67 ~pTPL~r~~~L~~~lg~~~~Iy~K~E~~nPt--GS~K~R~A~~~~~~a~~~G~~~~vtetssG--N~G~alA~aaa~~Gl 142 (419)
T TIGR01415 67 RPTPLIRAKGLEELLGTPARIYYKYESVSPT--GSHKINTAIAQAYYAKIEGAKRLVTETGAG--QWGSALSLAGALFGL 142 (419)
T ss_pred CCCCeEEccchhhhhCCCceEEEEECCCCCC--CCcHHHHHHHHHHHHHHcCCCeEEEecCch--HHHHHHHHHHHHcCC
Confidence 4455555555555554 6899999999875 79999999999999999999999994 664 599999999999999
Q ss_pred eEEEEeccccCCccchhhHHHHhCC-eEEEECCCCccc-hH--------------HHHHHHHHH--------hcccc-cc
Q 020509 168 KSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAH-RI--------------EMLKSYANL--------VAGNN-GD 222 (325)
Q Consensus 168 kcvlvlrge~~~~~tGN~ll~~LlG-~V~~V~r~~y~~-kd--------------a~~e~~~~~--------~~Gas-G~ 222 (325)
+|+++|.........-...+++++| +|+.++....+. +. ++.++.... +.|.. -.
T Consensus 143 ~~~V~mp~~s~~~k~~k~~~m~~~GA~Vi~~~~~~~~~~r~~~~~~p~~~gsl~~ai~~a~e~a~~~~~~~y~~~~~~n~ 222 (419)
T TIGR01415 143 ECKVFMVRVSFNQKPYRKYLMELYGAEVIPSPSEFTEFGREVLKEDPDHPGSLGIAISEAIEYALSDEDTKYSLGSVLNH 222 (419)
T ss_pred cEEEEEeCCCcccCHHHHHHHHHcCCEEEEECCchhhHHHHhhhcccccccchHHHHHHHHHHHHhCCCCEEEeCCCCcH
Confidence 9999997533222223457899999 999998642211 10 111211111 11111 11
Q ss_pred hhhHHHHHHHHHHHhhhhhccccccchhhhhhccCCcEEEEeCCCcchhhhh-hhccc
Q 020509 223 VVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALL-VLIPG 279 (325)
Q Consensus 223 vr~~~eI~~qe~~~q~~~~~~~~~~d~~~~l~~~g~~~y~ip~GGSnaiG~l-Gyi~~ 279 (325)
+.--+..++.|+.+|+.. .+..+|.++++.||||+..|+. |+++.
T Consensus 223 ~~~h~~~ig~Ei~~Ql~~------------~g~~pD~vv~~vG~Gg~~~Gi~~~f~~~ 268 (419)
T TIGR01415 223 VLLHQTVIGLEAKKQMEE------------AGEDPDVIIGCVGGGSNFAGLAFPFVAD 268 (419)
T ss_pred HHHHHHHHHHHHHHHHHh------------cCCCCCEEEEEeCchHHHHHHHHHHHHH
Confidence 233456788888777632 2345888999999999988874 55443
No 25
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=99.68 E-value=7.7e-16 Score=146.98 Aligned_cols=185 Identities=12% Similarity=0.058 Sum_probs=122.9
Q ss_pred CcCccCCCCccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHhhhCC---CCeEEEeCcccchHHHHHHHHHHHhCCeE
Q 020509 93 CPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHI---VTDLVTCGGCQSAHATAVAVSCAERGLKS 169 (325)
Q Consensus 93 tp~l~~~~Ls~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G---~~~LVT~GG~QSNH~~AtAaaAa~lGLkc 169 (325)
||++..++|++..|.+||+|||++++ .|++|.|+..+.|.+|+++| .++||+.++ .||++|+|++|+.+|++|
T Consensus 2 TPl~~~~~l~~~~g~~i~~K~E~~np--tGS~K~R~a~~~l~~a~~~g~~~~~~vv~aSs--GN~g~alA~~a~~~G~~~ 77 (316)
T cd06448 2 TPLIESTALSKTAGCNVFLKLENLQP--SGSFKIRGIGHLCQKSAKQGLNECVHVVCSSG--GNAGLAAAYAARKLGVPC 77 (316)
T ss_pred CCccccchhhHhhCCeEEEEeccCCC--cCChHHHHHHHHHHHHHHhhcccCCeEEEeCC--cHHHHHHHHHHHHcCCCE
Confidence 45555555555557899999999986 38999999999999999998 899999764 599999999999999999
Q ss_pred EEEeccccCCccchhhHHHHhCC-eEEEECCCCccchHHHHHHHHH----Hh--------cccccchhhHHHHHHHHHHH
Q 020509 170 HLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYAN----LV--------AGNNGDVVWCNEIFEASLTA 236 (325)
Q Consensus 170 vlvlrge~~~~~tGN~ll~~LlG-~V~~V~r~~y~~kda~~e~~~~----~~--------~GasG~vr~~~eI~~qe~~~ 236 (325)
++++.... .......++.+| +|+.++...+....++.+.+.+ ++ .+..|+...+.||. +
T Consensus 78 ~iv~p~~~---~~~k~~~l~~~GA~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~-----~ 149 (316)
T cd06448 78 TIVVPEST---KPRVVEKLRDEGATVVVHGKVWWEADNYLREELAENDPGPVYVHPFDDPLIWEGHSSMVDEIA-----Q 149 (316)
T ss_pred EEEECCCC---CHHHHHHHHHcCCEEEEECCchHHHHHHHHHHHHhccCCcEEeCCCCCchhhccccHHHHHHH-----H
Confidence 99997643 344677889999 9999986523222222222211 11 11114444444443 3
Q ss_pred hhhhhccccccchhhhhhccCCcEEEEeCCCcchhhhhhhcccccccccccceEEeeeccccCceecccc
Q 020509 237 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLVLIPGSFTWKKKGYKICCGCWYWDNSCWFRSW 306 (325)
Q Consensus 237 q~~~~~~~~~~d~~~~l~~~g~~~y~ip~GGSnaiG~lGyi~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 306 (325)
|+.. . ..++.+++..|+|++..|+.-++.-.. + . +.-+.++--...++.+++|
T Consensus 150 q~~~------------~-~~~D~vv~~vG~Gg~~~Gv~~~~k~~~-~-~--~~~ii~Vep~g~~~~~~~~ 202 (316)
T cd06448 150 QLQS------------Q-EKVDAIVCSVGGGGLLNGIVQGLERNG-W-G--DIPVVAVETEGAHSLNASL 202 (316)
T ss_pred Hccc------------c-CCCCEEEEEeCchHHHHHHHHHHHhcC-C-C--CCEEEEEeeCCChHHHHHH
Confidence 3311 1 247788888888888888866665431 1 1 2334444444444666655
No 26
>PRK10717 cysteine synthase A; Provisional
Probab=99.66 E-value=1.8e-15 Score=144.35 Aligned_cols=103 Identities=16% Similarity=0.146 Sum_probs=86.7
Q ss_pred CCCcCccCCCCccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHhhhCCC----CeEEEeCcccchHHHHHHHHHHHhC
Q 020509 91 NTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSAHATAVAVSCAERG 166 (325)
Q Consensus 91 ~~tp~l~~~~Ls~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G~----~~LVT~GG~QSNH~~AtAaaAa~lG 166 (325)
.+||++..++|++..|.+||+|+|+++++ |++|.|...+.+.+|++.|+ ++||+ +...||++|+|++|+++|
T Consensus 12 g~TPL~~~~~l~~~~g~~i~~K~E~~npt--GS~K~Rga~~~v~~a~~~g~~~~g~~vv~--aSsGN~g~alA~~a~~~G 87 (330)
T PRK10717 12 GNTPLIRLNRASEATGCEILGKAEFLNPG--GSVKDRAALNIIWDAEKRGLLKPGGTIVE--GTAGNTGIGLALVAAARG 87 (330)
T ss_pred CCCceEEccccCCCCCCeEEEEeeccCCC--CCchHHHHHHHHHHHHHcCCCCCCCEEEE--eCCcHHHHHHHHHHHHcC
Confidence 45666666666666688999999999875 89999999999999999987 77888 466789999999999999
Q ss_pred CeEEEEeccccCCccchhhHHHHhCC-eEEEECCC
Q 020509 167 LKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRT 200 (325)
Q Consensus 167 Lkcvlvlrge~~~~~tGN~ll~~LlG-~V~~V~r~ 200 (325)
++|++|+.... ...+..+++.+| +|+.++..
T Consensus 88 ~~~~vv~p~~~---~~~k~~~~~~~GA~V~~~~~~ 119 (330)
T PRK10717 88 YKTVIVMPETQ---SQEKKDLLRALGAELVLVPAA 119 (330)
T ss_pred CcEEEEeCCCC---CHHHHHHHHHcCCEEEEeCCc
Confidence 99999996543 345778899999 99999864
No 27
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=99.65 E-value=4.2e-15 Score=139.84 Aligned_cols=165 Identities=11% Similarity=0.050 Sum_probs=113.3
Q ss_pred CCcCccCCCCccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHhhhCCC----CeEEEeCcccchHHHHHHHHHHHhCC
Q 020509 92 TCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSAHATAVAVSCAERGL 167 (325)
Q Consensus 92 ~tp~l~~~~Ls~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G~----~~LVT~GG~QSNH~~AtAaaAa~lGL 167 (325)
.||++..++|++..|.+||+|+||++++ |++|.|+..+.+.+|++.|. ++||+ +...||++++|++|+++|+
T Consensus 7 ~TPL~~~~~l~~~~g~~i~~K~E~~~pt--GS~K~R~a~~~~~~a~~~g~~~~g~~vv~--aSsGN~g~alA~~a~~~G~ 82 (299)
T TIGR01136 7 NTPLVRLNRLAPGCDARVLAKLEGRNPS--GSVKDRIALSMIEDAEKRGLLKPGDTIIE--ATSGNTGIALAMVAAAKGY 82 (299)
T ss_pred CCceEEccccCCCCCceEEEEEcccCCC--CCccHHHHHHHHHHHHHcCCCCCCCEEEE--eCCChHHHHHHHHHHHcCC
Confidence 3555555555665678999999999874 89999999999999999998 77764 4667899999999999999
Q ss_pred eEEEEeccccCCccchhhHHHHhCC-eEEEECCCCccchHHHHH--HHHHHhcc------cccc--hhhHHHHHHHHHHH
Q 020509 168 KSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLK--SYANLVAG------NNGD--VVWCNEIFEASLTA 236 (325)
Q Consensus 168 kcvlvlrge~~~~~tGN~ll~~LlG-~V~~V~r~~y~~kda~~e--~~~~~~~G------asG~--vr~~~eI~~qe~~~ 236 (325)
+|+++|.... ...+..+++.+| +|+.++.. +...+.+.. .+.+...| .+.. ..+.+..++.|+.+
T Consensus 83 ~~~i~vp~~~---~~~k~~~~~~~GA~v~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ 158 (299)
T TIGR01136 83 KLILTMPETM---SLERRKLLRAYGAELILTPAE-EGMKGAIDKAEELAAETNKYVMLDQFENPANPEAHYKTTGPEIWR 158 (299)
T ss_pred cEEEEECCCC---CHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHhhCCCeEecCCCCCchhHHHHHHHHHHHHHH
Confidence 9999996542 345778899999 99999754 222222211 11111001 1111 12335556666644
Q ss_pred hhhhhccccccchhhhhhccCCcEEEEeCCCcchhhhhhhccc
Q 020509 237 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLVLIPG 279 (325)
Q Consensus 237 q~~~~~~~~~~d~~~~l~~~g~~~y~ip~GGSnaiG~lGyi~~ 279 (325)
|+ ...++.+++..|||++..|+.-+++.
T Consensus 159 ql---------------~~~~d~iv~~vG~Gg~~~G~~~~~~~ 186 (299)
T TIGR01136 159 DT---------------DGRIDHFVAGVGTGGTITGVGRYLKE 186 (299)
T ss_pred hc---------------CCCCCEEEEcCchhHHHHHHHHHHHH
Confidence 33 22467777777788888888666653
No 28
>PRK07476 eutB threonine dehydratase; Provisional
Probab=99.65 E-value=1.6e-15 Score=144.60 Aligned_cols=102 Identities=16% Similarity=0.161 Sum_probs=84.3
Q ss_pred CCcCccCCCCccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHhhhCCCCe-EEEeCcccchHHHHHHHHHHHhCCeEE
Q 020509 92 TCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTD-LVTCGGCQSAHATAVAVSCAERGLKSH 170 (325)
Q Consensus 92 ~tp~l~~~~Ls~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G~~~-LVT~GG~QSNH~~AtAaaAa~lGLkcv 170 (325)
+||++..++|++..|.+||+||||+++ .|++|.|++.+.|.+|++.+++. ||+. .++||++|+|++|+++|++|+
T Consensus 19 ~TPl~~~~~l~~~~g~~l~~K~E~~np--tGS~K~R~a~~~i~~a~~~~~~~gvv~a--SsGN~g~alA~~a~~~G~~~~ 94 (322)
T PRK07476 19 RTPLVASASLSARAGVPVWLKLETLQP--TGSFKLRGATNALLSLSAQERARGVVTA--STGNHGRALAYAARALGIRAT 94 (322)
T ss_pred CCCceechhhHHhhCCeEEEEEccCCC--CCCchHHHHHHHHHhhhhhhhCCeEEEE--CCChHHHHHHHHHHHhCCCEE
Confidence 344444445555567899999999987 58999999999999999888776 8887 668999999999999999999
Q ss_pred EEeccccCCccchhhHHHHhCC-eEEEECCC
Q 020509 171 LLLRGEQPQILTGYNLISTIYG-KVTYVPRT 200 (325)
Q Consensus 171 lvlrge~~~~~tGN~ll~~LlG-~V~~V~r~ 200 (325)
+++.... ...+...++.+| +|+.++..
T Consensus 95 i~vp~~~---~~~k~~~~~~~GA~V~~~~~~ 122 (322)
T PRK07476 95 ICMSRLV---PANKVDAIRALGAEVRIVGRS 122 (322)
T ss_pred EEeCCCC---CHHHHHHHHHcCCEEEEECCC
Confidence 9996543 345777889999 99999854
No 29
>PLN00011 cysteine synthase
Probab=99.64 E-value=2e-15 Score=144.41 Aligned_cols=101 Identities=16% Similarity=0.129 Sum_probs=83.1
Q ss_pred CcCccCCCCccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHhhhCC-----CCeEEEeCcccchHHHHHHHHHHHhCC
Q 020509 93 CPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHI-----VTDLVTCGGCQSAHATAVAVSCAERGL 167 (325)
Q Consensus 93 tp~l~~~~Ls~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G-----~~~LVT~GG~QSNH~~AtAaaAa~lGL 167 (325)
||++..++++...|.+||+|+||+++ .|+||.|++.+.+.+|++.| +++||+ +..+||++|+|++|+.+|+
T Consensus 18 TPl~~l~~l~~~~g~~i~~K~E~~nP--tGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~--aSsGN~g~alA~~a~~~G~ 93 (323)
T PLN00011 18 TPMVYLNNIVDGCVARIAAKLEMMEP--CSSVKDRIAYSMIKDAEDKGLITPGKSTLIE--ATAGNTGIGLACIGAARGY 93 (323)
T ss_pred CceEEccccCCCCCceEEEEecccCC--ccccchHHHHHHHHHHHHcCCCCCCCcEEEE--eCCChHHHHHHHHHHHcCC
Confidence 33333333333335799999999987 59999999999999999988 689998 5778999999999999999
Q ss_pred eEEEEeccccCCccchhhHHHHhCC-eEEEECCC
Q 020509 168 KSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRT 200 (325)
Q Consensus 168 kcvlvlrge~~~~~tGN~ll~~LlG-~V~~V~r~ 200 (325)
+|++|+.... ...|..+++.+| +|+.++..
T Consensus 94 ~~~ivvp~~~---~~~k~~~i~~~GA~V~~~~~~ 124 (323)
T PLN00011 94 KVILVMPSTM---SLERRIILRALGAEVHLTDQS 124 (323)
T ss_pred eEEEEeCCCC---CHHHHHHHHHcCCEEEEECCC
Confidence 9999997543 357888999999 99999864
No 30
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=99.64 E-value=2.8e-15 Score=139.74 Aligned_cols=102 Identities=17% Similarity=0.190 Sum_probs=84.1
Q ss_pred CCcCccCCCCccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHhhhCC-CCeEEEeCcccchHHHHHHHHHHHhCCeEE
Q 020509 92 TCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHI-VTDLVTCGGCQSAHATAVAVSCAERGLKSH 170 (325)
Q Consensus 92 ~tp~l~~~~Ls~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G-~~~LVT~GG~QSNH~~AtAaaAa~lGLkcv 170 (325)
+||++..++|++..|++||+||||++++ |.+|.|.+.+.|..+++.+ .++||++++ +||++|+|++|+++|++|+
T Consensus 17 ~TPl~~~~~l~~~~g~~i~~K~E~~npt--gS~Kdr~a~~~l~~~~~~~~~~~iv~~ss--GN~g~alA~~a~~~G~~~~ 92 (304)
T cd01562 17 RTPLLTSPTLSELLGAEVYLKCENLQKT--GSFKIRGAYNKLLSLSEEERAKGVVAASA--GNHAQGVAYAAKLLGIPAT 92 (304)
T ss_pred CCCcccchhhHHHhCCeEEEEeccCCCc--CCcHHHhHHHHHHhcCHhhcCCcEEEECC--CHHHHHHHHHHHHcCCCEE
Confidence 4555555555555678999999999974 7799999999999998776 778999854 8999999999999999999
Q ss_pred EEeccccCCccchhhHHHHhCC-eEEEECCC
Q 020509 171 LLLRGEQPQILTGYNLISTIYG-KVTYVPRT 200 (325)
Q Consensus 171 lvlrge~~~~~tGN~ll~~LlG-~V~~V~r~ 200 (325)
+++.... ...+..+++.+| +|+.++..
T Consensus 93 ivvp~~~---~~~k~~~l~~~Ga~vi~~~~~ 120 (304)
T cd01562 93 IVMPETA---PAAKVDATRAYGAEVVLYGED 120 (304)
T ss_pred EEECCCC---CHHHHHHHHHcCCEEEEeCCC
Confidence 9996543 345777899999 99999874
No 31
>PRK06352 threonine synthase; Validated
Probab=99.64 E-value=3.8e-15 Score=144.26 Aligned_cols=105 Identities=13% Similarity=0.207 Sum_probs=86.6
Q ss_pred CCCCcCccCCCCccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHhhhCCCCeEEEeCcccchHHHHHHHHHHHhCCeE
Q 020509 90 NNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKS 169 (325)
Q Consensus 90 ~~~tp~l~~~~Ls~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G~~~LVT~GG~QSNH~~AtAaaAa~lGLkc 169 (325)
.-+||++..++|++..|.+||+|+|++++ .|++|.|...+.+.+|+++|+++||+. ...||++|+|++|+++|++|
T Consensus 26 ~G~TPL~~~~~l~~~~g~~l~~K~E~~np--tGS~KdR~a~~~i~~a~~~g~~~vV~a--SsGN~G~AlA~~aa~~G~~~ 101 (351)
T PRK06352 26 EGNTPLIPLPNLSKELGVTLYGKYEGLNP--TGSFKDRGMVMAVAKAKEEGAEAVICA--STGNTSAAAAAYATRAGLKA 101 (351)
T ss_pred CCCCCeeEcHhhHHHhCCeEEEEecCCCC--ccChHHHHHHHHHHHHHHCCCCEEEEE--CCcHHHHHHHHHHHHcCCcE
Confidence 34555555556666667899999999987 489999999999999999999999996 45699999999999999999
Q ss_pred EEEeccccCCccchhhHHHHhCC-eEEEECCC
Q 020509 170 HLLLRGEQPQILTGYNLISTIYG-KVTYVPRT 200 (325)
Q Consensus 170 vlvlrge~~~~~tGN~ll~~LlG-~V~~V~r~ 200 (325)
++++.... ....+..+++.+| +|+.++..
T Consensus 102 ~ivvp~~~--~~~~k~~~~~a~GA~V~~~~~~ 131 (351)
T PRK06352 102 YIVIPEGK--VALGKLAQAVMYGADIISIQGN 131 (351)
T ss_pred EEEEeCCC--CcHHHHHHHHhcCCEEEEECCC
Confidence 99995421 1355777889999 99999853
No 32
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=99.62 E-value=1e-14 Score=142.91 Aligned_cols=102 Identities=13% Similarity=0.108 Sum_probs=86.3
Q ss_pred CCCcCccCCCCccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHhhhCC-----CCeEEEeCcccchHHHHHHHHHHHh
Q 020509 91 NTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHI-----VTDLVTCGGCQSAHATAVAVSCAER 165 (325)
Q Consensus 91 ~~tp~l~~~~Ls~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G-----~~~LVT~GG~QSNH~~AtAaaAa~l 165 (325)
..||++..+++++..|++||+|+|+++++ |++|.|+..++|.+|++.| +++||+ +..+||++|+|++|+.+
T Consensus 58 g~TPl~~l~~l~~~~g~~I~~KlE~~nPt--GS~KdR~A~~~l~~a~~~G~i~pG~~~vV~--aSsGN~G~alA~~a~~~ 133 (368)
T PLN02556 58 GKTPLVYLNKVTEGCGAYIAAKQEMFQPT--SSIKDRPALAMIEDAEKKNLITPGKTTLIE--PTSGNMGISLAFMAAMK 133 (368)
T ss_pred CCCccEEccccccccCCEEEEEecccCCc--cchHHHHHHHHHHHHHHcCCcCCCCCEEEE--eCCchHHHHHHHHHHHc
Confidence 45666666666666678999999999874 7999999999999998886 578888 56889999999999999
Q ss_pred CCeEEEEeccccCCccchhhHHHHhCC-eEEEECC
Q 020509 166 GLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPR 199 (325)
Q Consensus 166 GLkcvlvlrge~~~~~tGN~ll~~LlG-~V~~V~r 199 (325)
|++|++++... ....+..+++.+| +|+.++.
T Consensus 134 G~~~~ivvp~~---~~~~k~~~lr~~GA~Vi~~~~ 165 (368)
T PLN02556 134 GYKMILTMPSY---TSLERRVTMRAFGAELVLTDP 165 (368)
T ss_pred CCCEEEEECCC---CCHHHHHHHHHcCCEEEEECC
Confidence 99999999643 3567888999999 9999975
No 33
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.62 E-value=1.3e-14 Score=142.64 Aligned_cols=102 Identities=11% Similarity=0.076 Sum_probs=85.0
Q ss_pred CCcCccCCCCccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHhhhCCC----CeEEEeCcccchHHHHHHHHHHHhCC
Q 020509 92 TCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSAHATAVAVSCAERGL 167 (325)
Q Consensus 92 ~tp~l~~~~Ls~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G~----~~LVT~GG~QSNH~~AtAaaAa~lGL 167 (325)
+||++..++|++..|.+||+|+|++++ .|++|.|+..+.+.+|++.|+ ++||+. ..+||++|+|++|+++|+
T Consensus 11 ~TPl~~~~~l~~~~~~~i~~K~E~~np--tGS~K~R~a~~~l~~a~~~g~~~~g~~vv~~--ssGN~g~alA~~a~~~G~ 86 (454)
T TIGR01137 11 NTPLVRLNKVSKGIKCELLAKCEFFNP--GGSVKDRIALRMIEDAEASGRLKPGDTIIEP--TSGNTGIGLALVAAIKGY 86 (454)
T ss_pred CCceEEccccCCCCCceEEEEEhhcCC--CcchHHHHHHHHHHHHHHcCCCCCCCEEEEe--CCcHHHHHHHHHHHHcCC
Confidence 445555555555557799999999987 499999999999999999988 889997 778999999999999999
Q ss_pred eEEEEeccccCCccchhhHHHHhCC-eEEEECCC
Q 020509 168 KSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRT 200 (325)
Q Consensus 168 kcvlvlrge~~~~~tGN~ll~~LlG-~V~~V~r~ 200 (325)
+|++++.... ...+..+++.+| +|+.++..
T Consensus 87 ~~~iv~p~~~---~~~k~~~~~~~GA~v~~~~~~ 117 (454)
T TIGR01137 87 KCIIVLPEKM---SNEKVDVLKALGAEIVRTPTA 117 (454)
T ss_pred eEEEEeCCCc---CHHHHHHHHHCCCEEEEcCCc
Confidence 9999996532 345788899999 99999753
No 34
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=99.61 E-value=8.5e-15 Score=137.49 Aligned_cols=154 Identities=12% Similarity=0.064 Sum_probs=104.9
Q ss_pred CCCCeEEEEecCCCCCCCCChhHhhHHhhHHHhhhCCC----CeEEEeCcccchHHHHHHHHHHHhCCeEEEEeccccCC
Q 020509 104 DEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQ 179 (325)
Q Consensus 104 ~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G~----~~LVT~GG~QSNH~~AtAaaAa~lGLkcvlvlrge~~~ 179 (325)
..|.+||+|+|+++++ |++|.|+..+.|.+|++.|+ ++||+ +...||++|+|++|+++|++|++|+....
T Consensus 18 ~~g~~i~~K~E~~npt--GS~K~R~a~~~l~~a~~~g~~~~g~~vv~--aSsGN~g~alA~~a~~~Gl~~~i~vp~~~-- 91 (298)
T TIGR01139 18 GCNANVFVKLEGRNPS--GSVKDRIALNMIWDAEKRGLLKPGKTIVE--PTSGNTGIALAMVAAARGYKLILTMPETM-- 91 (298)
T ss_pred CCCceEEEEEcccCCC--CcchHHHHHHHHHHHHHcCCCCCCCEEEE--eCCChhHHHHHHHHHHcCCeEEEEeCCcc--
Confidence 3477999999999874 89999999999999999998 77754 45578999999999999999999997543
Q ss_pred ccchhhHHHHhCC-eEEEECCCCccchHHHHH--HHHH-----H--hcccccc--hhhHHHHHHHHHHHhhhhhcccccc
Q 020509 180 ILTGYNLISTIYG-KVTYVPRTHYAHRIEMLK--SYAN-----L--VAGNNGD--VVWCNEIFEASLTAQKSRASCLGQM 247 (325)
Q Consensus 180 ~~tGN~ll~~LlG-~V~~V~r~~y~~kda~~e--~~~~-----~--~~GasG~--vr~~~eI~~qe~~~q~~~~~~~~~~ 247 (325)
......+++.+| +|+.++.. +...+.+.. .+.+ + +...+.. ..+-+..++.|+-+|
T Consensus 92 -~~~k~~~~~~~GA~v~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q---------- 159 (298)
T TIGR01139 92 -SIERRKLLKAYGAELVLTPGA-EGMKGAIAKAEEIAASTPNSYFMLQQFENPANPEIHRKTTGPEIWRD---------- 159 (298)
T ss_pred -CHHHHHHHHHcCCEEEEECCC-CCHHHHHHHHHHHHHhCCCcEEcccccCCcccHHHHHHHHHHHHHHH----------
Confidence 233567789999 99999864 322222221 1111 1 0000111 122234455555333
Q ss_pred chhhhhhccCCcEEEEeCCCcchhhhhhhcccc
Q 020509 248 DAHKGIDNCRKKVLIVNEGAGDAVALLVLIPGS 280 (325)
Q Consensus 248 d~~~~l~~~g~~~y~ip~GGSnaiG~lGyi~~~ 280 (325)
+...++.+++..|+|+...|+.-+++..
T Consensus 160 -----~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~ 187 (298)
T TIGR01139 160 -----TDGKLDAFVAGVGTGGTITGVGEVLKEQ 187 (298)
T ss_pred -----hCCCCCEEEEecchhHhHHHHHHHHHhc
Confidence 3334788777778888888887776543
No 35
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=99.60 E-value=9.8e-15 Score=138.35 Aligned_cols=173 Identities=13% Similarity=0.109 Sum_probs=117.4
Q ss_pred ccccCCCCcCccCCCCccCCCC-eEEEEecCCCCCCCCChhHhhHHhhHHHhhhCCCCeEEEeCcccchHHHHHHHHHHH
Q 020509 86 ISFLNNTCPFLGDDMIMRDEDR-CFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAE 164 (325)
Q Consensus 86 i~~l~~~tp~l~~~~Ls~~~G~-~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G~~~LVT~GG~QSNH~~AtAaaAa~ 164 (325)
++....+||++..+++++..|. +||+|+|++++ .|.+|.|.+.+++.++++.|.++||+ +...||+.|+|++|+.
T Consensus 17 ~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~np--tGSfKdR~a~~~l~~a~~~g~~~vv~--aSsGN~g~a~A~~a~~ 92 (328)
T TIGR00260 17 VDLGEGVTPLFRSPALVANVGIKNLYVLELFHNP--TLSFKDRGMAVALTKALELGNDTVLC--ASTGNTGAAAAAYAGK 92 (328)
T ss_pred hhhccCCccCccchHHHHhcCCccEEehhhccCC--chhhHhhhHHHHHHHHHHcCCCEEEE--eCCcHHHHHHHHHhcc
Confidence 3344466777666666666676 99999999986 58999999999999999999999988 3567999999999999
Q ss_pred hCCeEEEEeccccCCccchhhHHHHhCC-eEEEECCCCccchHH-HHHHHHH---Hhcccc---cchhhHHHHHHHHHHH
Q 020509 165 RGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIE-MLKSYAN---LVAGNN---GDVVWCNEIFEASLTA 236 (325)
Q Consensus 165 lGLkcvlvlrge~~~~~tGN~ll~~LlG-~V~~V~r~~y~~kda-~~e~~~~---~~~Gas---G~vr~~~eI~~qe~~~ 236 (325)
+|++|++++.... ....+...++.+| +|+.++.+ +....+ ..+...+ ++.+.. -.....+..++-|+.+
T Consensus 93 ~g~~~~v~~p~~~--~s~~k~~~~~~~GA~Vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~t~~~Ei~~ 169 (328)
T TIGR00260 93 AGVKVVILYPAGK--ISLGKLAQALGYNAEVVAIDGN-FDDAQRLVKQLFGDKEALGLNSVNSIPYRLEGQKTYAFEAVE 169 (328)
T ss_pred CCCcEEEEECCCC--CCHHHHHHHHhcCcEEEEecCC-HHHHHHHHHHHHhhcCeeecccCCCCCeEeeeehhHHHHHHH
Confidence 9999999996542 2357888889999 99999863 322222 2222222 111111 0001222334444433
Q ss_pred hhhhhccccccchhhhhhccCCcEEEEeCCCcchhhhhhhccc
Q 020509 237 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLVLIPG 279 (325)
Q Consensus 237 q~~~~~~~~~~d~~~~l~~~g~~~y~ip~GGSnaiG~lGyi~~ 279 (325)
|+.. ..++.+++..|||++..|+..++..
T Consensus 170 q~~~--------------~~~d~iv~~vG~GG~~~G~~~~~~~ 198 (328)
T TIGR00260 170 QLGW--------------EAPDKVVVPVPNSGNFGAILKGFKE 198 (328)
T ss_pred HhCC--------------CCCCEEEEECCCcchHHHHHHHHHH
Confidence 3310 2466666666668888888887764
No 36
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=99.60 E-value=5.2e-15 Score=144.41 Aligned_cols=176 Identities=14% Similarity=0.151 Sum_probs=130.9
Q ss_pred CCCcCccCCCCccCC--CCeEEEEecCCCCCCCCChhHhhHHhhHHHh---hhCCCCeEEE-eCcccchHHHHHHHHHHH
Q 020509 91 NTCPFLGDDMIMRDE--DRCFYVVRDDLLHPLVNGNKARKMDALLPLL---EDHIVTDLVT-CGGCQSAHATAVAVSCAE 164 (325)
Q Consensus 91 ~~tp~l~~~~Ls~~~--G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA---~~~G~~~LVT-~GG~QSNH~~AtAaaAa~ 164 (325)
||||++.+.+|.+.+ .++||.|.|+.+.++ -||++-.|+|| +..|+++|+| +|++| ++.|++.||+.
T Consensus 77 RPTPL~RA~~LE~~L~tparIYyK~Eg~tptG-----SHKiNTAlAqaYyak~eg~~rl~TETGAGQ--WGsAlslA~al 149 (432)
T COG1350 77 RPTPLIRAKNLEEALGTPARIYYKYEGVTPTG-----SHKINTALAQAYYAKKEGAKRLTTETGAGQ--WGSALSLAAAL 149 (432)
T ss_pred CCCchhhhhhHHHHhCCCcEEEEEecccCCCC-----CCCcchHHHHHHHHHhcCceeeecccCCch--HHHHHHHHHHH
Confidence 566666666666554 469999999999987 89999999997 8899999999 99999 99999999999
Q ss_pred hCCeEEEEeccccCCccch-hhHHHHhCC-eEEEECCCCcc--ch-------------HHHHHHHHHHh--------ccc
Q 020509 165 RGLKSHLLLRGEQPQILTG-YNLISTIYG-KVTYVPRTHYA--HR-------------IEMLKSYANLV--------AGN 219 (325)
Q Consensus 165 lGLkcvlvlrge~~~~~tG-N~ll~~LlG-~V~~V~r~~y~--~k-------------da~~e~~~~~~--------~Ga 219 (325)
+||+|+++|-..-- .+.+ .-.+|.++| +|++-++..-. .+ -++.|+..+.+ .|+
T Consensus 150 f~lk~~V~Mvr~Sy-~qKpyRk~lM~~yGa~V~pSPS~~Te~Grk~l~e~p~hPGSLGIAISEAiE~al~~~~~kY~lGS 228 (432)
T COG1350 150 FGLKATVFMVRVSY-YQKPYRKYLMELYGAEVVPSPSELTEFGRKILKEDPDHPGSLGIAISEAIEYALKNENTKYSLGS 228 (432)
T ss_pred hCceeEEEEEehhh-hcchHHHHHHHHhCCeecCCCcchhHHHHHHHhcCCCCCchhHHHHHHHHHHHHhCCCceecchh
Confidence 99999999954321 1222 345789999 99987654211 11 12444443332 344
Q ss_pred c-cchhhHHHHHHHHHHHhhhhhccccccchhhhhhccCCcEEEEeCCCcchhhhhhhccccccccccc
Q 020509 220 N-GDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLVLIPGSFTWKKKG 287 (325)
Q Consensus 220 s-G~vr~~~eI~~qe~~~q~~~~~~~~~~d~~~~l~~~g~~~y~ip~GGSnaiG~lGyi~~~~e~~~~~ 287 (325)
. -.|.-.|-||+.|+++|+-. ++..||.++-|.|||||--| |.|=-+..++..+.
T Consensus 229 VlnhvllhQTViGlEakkQle~------------~~e~PDv~igcvGGGSNfag-~~yPfi~d~l~g~~ 284 (432)
T COG1350 229 VLNHVLLHQTVIGLEAKKQLEQ------------AGEDPDVIIGCVGGGSNFAG-LTYPFIGDKLRGKK 284 (432)
T ss_pred HHHHHHHHHHHHhHHHHHHHHh------------cCCCCCEEEEeccCCCcccc-ccchhhhhhhcCCc
Confidence 3 56788999999999999844 88999999999999999544 44544455555444
No 37
>PRK07409 threonine synthase; Validated
Probab=99.58 E-value=2.6e-14 Score=137.95 Aligned_cols=109 Identities=16% Similarity=0.221 Sum_probs=89.8
Q ss_pred ccccCCCCcCccCCCCccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHhhhCCCCeEEEeCcccchHHHHHHHHHHHh
Q 020509 86 ISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAER 165 (325)
Q Consensus 86 i~~l~~~tp~l~~~~Ls~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G~~~LVT~GG~QSNH~~AtAaaAa~l 165 (325)
+++..-.||++..++|++..|.+||+|+|++++ .|.+|.|...+.+..|++.|+++||+. ...||+.|+|++|+.+
T Consensus 25 ~~l~~g~TPl~~~~~l~~~~g~~i~~K~E~~np--tGSfKdR~a~~~l~~a~~~g~~~iv~a--SsGN~g~alA~~a~~~ 100 (353)
T PRK07409 25 VTLGEGNTPLIPAPNLSELLGVEVYVKYEGLNP--TGSFKDRGMTMAVTKAKEEGAKAVICA--STGNTSASAAAYAARA 100 (353)
T ss_pred ccCCCCCCCEEEchhhHHHhCCeEEEEecCCCC--ccchHHHHHHHHHHHHHHCCCCEEEEE--CCcHHHHHHHHHHHHc
Confidence 344556677777777777668899999999987 489999999999999999999999985 5569999999999999
Q ss_pred CCeEEEEeccccCCccchhhHHHHhCC-eEEEECCC
Q 020509 166 GLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRT 200 (325)
Q Consensus 166 GLkcvlvlrge~~~~~tGN~ll~~LlG-~V~~V~r~ 200 (325)
|++|++++.... ....+...++.+| +|+.++..
T Consensus 101 G~~~~ivvP~~~--~~~~k~~~~~~~GA~Vi~~~~~ 134 (353)
T PRK07409 101 GLKAFVLIPEGK--IALGKLAQAVMYGAEIIQIDGN 134 (353)
T ss_pred CCCEEEEEcCCC--CchhhHHHHHhcCCEEEEECCC
Confidence 999999996532 1234666788899 99999853
No 38
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=99.58 E-value=5.1e-14 Score=132.91 Aligned_cols=102 Identities=14% Similarity=0.160 Sum_probs=83.7
Q ss_pred CCcCccCCCCccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHhhhCCC----CeEEEeCcccchHHHHHHHHHHHhCC
Q 020509 92 TCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSAHATAVAVSCAERGL 167 (325)
Q Consensus 92 ~tp~l~~~~Ls~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G~----~~LVT~GG~QSNH~~AtAaaAa~lGL 167 (325)
.||++..+++++..|.+||+|+|++++ .|++|.|...+.+.+|++.|. ++||+. ...||+.++|++|+++|+
T Consensus 8 ~TPl~~~~~l~~~~g~~i~~K~E~~np--tGS~K~R~a~~~v~~a~~~g~~~~g~~vv~a--SsGN~g~alA~~a~~~G~ 83 (290)
T TIGR01138 8 NTPLVRLQRMGPENGSEVWLKLEGNNP--AGSVKDRPALSMIVEAEKRGEIKPGDVLIEA--TSGNTGIALAMIAALKGY 83 (290)
T ss_pred CCceEEccccccCCCCeEEEEEccCCC--CccHHHHHHHHHHHHHHHcCCCCCCCEEEEE--CCChHHHHHHHHHHHcCC
Confidence 444454445555557899999999987 489999999999999999997 788884 667899999999999999
Q ss_pred eEEEEeccccCCccchhhHHHHhCC-eEEEECCC
Q 020509 168 KSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRT 200 (325)
Q Consensus 168 kcvlvlrge~~~~~tGN~ll~~LlG-~V~~V~r~ 200 (325)
+|++++.... ...+..+++.+| +|+.++..
T Consensus 84 ~~~i~~p~~~---~~~k~~~~~~~GA~v~~v~~~ 114 (290)
T TIGR01138 84 RMKLLMPDNM---SQERKAAMRAYGAELILVTKE 114 (290)
T ss_pred eEEEEECCCC---CHHHHHHHHHcCCEEEEeCCC
Confidence 9999996532 345677889999 99999864
No 39
>PRK06110 hypothetical protein; Provisional
Probab=99.57 E-value=2.8e-14 Score=136.16 Aligned_cols=102 Identities=12% Similarity=0.113 Sum_probs=80.3
Q ss_pred CCCcCccCCCCccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHhhhCCC--CeEEEeCcccchHHHHHHHHHHHhCCe
Q 020509 91 NTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV--TDLVTCGGCQSAHATAVAVSCAERGLK 168 (325)
Q Consensus 91 ~~tp~l~~~~Ls~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G~--~~LVT~GG~QSNH~~AtAaaAa~lGLk 168 (325)
.+||+...++|++..|.+||+|+||++++ |++|.|+..+.+.++++++. +.||+ +...||++++|++|+++|++
T Consensus 20 ~~TPl~~~~~l~~~~g~~i~~K~E~~npt--GS~K~Rga~~~l~~a~~~~~~~~~vv~--aSsGN~g~alA~~a~~~G~~ 95 (322)
T PRK06110 20 PPTPQYRWPLLAERLGCEVWVKHENHTPT--GAFKVRGGLVYFDRLARRGPRVRGVIS--ATRGNHGQSVAFAARRHGLA 95 (322)
T ss_pred cCCCcccchhHHHHhCCeEEEEeccCCCc--CCcHHHHHHHHHHHhhhhcCCCceEEE--ECCCHHHHHHHHHHHHcCCC
Confidence 45555555566666678999999999874 79999999999999987754 45443 45789999999999999999
Q ss_pred EEEEeccccCCccchhhHHHHhCC-eEEEECC
Q 020509 169 SHLLLRGEQPQILTGYNLISTIYG-KVTYVPR 199 (325)
Q Consensus 169 cvlvlrge~~~~~tGN~ll~~LlG-~V~~V~r 199 (325)
|++++....+ .....+++.+| +|+.++.
T Consensus 96 ~~ivvp~~~~---~~k~~~i~~~GA~V~~~~~ 124 (322)
T PRK06110 96 ATIVVPHGNS---VEKNAAMRALGAELIEHGE 124 (322)
T ss_pred EEEEEcCCCC---HHHHHHHHHcCCEEEEECC
Confidence 9999965432 23456788999 9998864
No 40
>PRK06608 threonine dehydratase; Provisional
Probab=99.56 E-value=3.6e-14 Score=137.13 Aligned_cols=102 Identities=17% Similarity=0.177 Sum_probs=84.9
Q ss_pred CCCcCccCCCCccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHhhhCCC--CeEEEeCcccchHHHHHHHHHHHhCCe
Q 020509 91 NTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV--TDLVTCGGCQSAHATAVAVSCAERGLK 168 (325)
Q Consensus 91 ~~tp~l~~~~Ls~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G~--~~LVT~GG~QSNH~~AtAaaAa~lGLk 168 (325)
.+||++..++|++..|.+||+||||+++ .|..|.|...+.+.+|+++|. ++||+. ..+||+.|+|++|+++|++
T Consensus 22 ~~TPl~~~~~l~~~~g~~l~~K~E~~np--tGS~K~R~a~~~v~~a~~~g~~~~~vv~~--SsGN~g~alA~~a~~~G~~ 97 (338)
T PRK06608 22 HLTPIVHSESLNEMLGHEIFFKVESLQK--TGAFKVRGVLNHLLELKEQGKLPDKIVAY--STGNHGQAVAYASKLFGIK 97 (338)
T ss_pred cCCCccchHhHHHHhCCEEEEEeCCCCC--CCCcHHHHHHHHHHHhhhhcCcCCeEEEE--CCCHHHHHHHHHHHHcCCC
Confidence 3466666666666668899999999987 578999999999999999997 688876 6789999999999999999
Q ss_pred EEEEeccccCCccchhhHHHHhCC-eEEEECC
Q 020509 169 SHLLLRGEQPQILTGYNLISTIYG-KVTYVPR 199 (325)
Q Consensus 169 cvlvlrge~~~~~tGN~ll~~LlG-~V~~V~r 199 (325)
|+++|.... ...+..+++.+| +|+.++.
T Consensus 98 ~~vv~p~~~---~~~k~~~l~~~GA~V~~~~~ 126 (338)
T PRK06608 98 TRIYLPLNT---SKVKQQAALYYGGEVILTNT 126 (338)
T ss_pred EEEEECCCC---CHHHHHHHHhCCCEEEEECC
Confidence 999995432 334677889999 9999964
No 41
>PRK08246 threonine dehydratase; Provisional
Probab=99.55 E-value=1.5e-13 Score=130.88 Aligned_cols=100 Identities=20% Similarity=0.146 Sum_probs=78.6
Q ss_pred CCCcCccCCCCccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHhhhCCCCeEEE-eCcccchHHHHHHHHHHHhCCeE
Q 020509 91 NTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVT-CGGCQSAHATAVAVSCAERGLKS 169 (325)
Q Consensus 91 ~~tp~l~~~~Ls~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G~~~LVT-~GG~QSNH~~AtAaaAa~lGLkc 169 (325)
.+||++..++++.. |.+||+|+|++++ .|..|.|...+.+..+.+ +.++||+ ++| ||++|+|++|+++|++|
T Consensus 22 ~~TPl~~~~~l~~~-~~~i~~K~E~~np--tGS~K~R~a~~~~~~~~~-~~~~vv~aSsG---N~g~a~A~~a~~~G~~~ 94 (310)
T PRK08246 22 RRTPVLEADGAGFG-PAPVWLKLEHLQH--TGSFKARGAFNRLLAAPV-PAAGVVAASGG---NAGLAVAYAAAALGVPA 94 (310)
T ss_pred CCCCeeeccccccC-CCEEEEEECCCCC--CCCCHHHHHHHHHHhhcc-cCCeEEEeCCC---HHHHHHHHHHHHcCCCE
Confidence 34555555555544 6799999999987 478999998888877766 6677777 554 99999999999999999
Q ss_pred EEEeccccCCccchhhHHHHhCC-eEEEECCC
Q 020509 170 HLLLRGEQPQILTGYNLISTIYG-KVTYVPRT 200 (325)
Q Consensus 170 vlvlrge~~~~~tGN~ll~~LlG-~V~~V~r~ 200 (325)
++++.... ...+..+++.+| +|+.++..
T Consensus 95 ~iv~p~~~---~~~k~~~~~~~GA~V~~~~~~ 123 (310)
T PRK08246 95 TVFVPETA---PPAKVARLRALGAEVVVVGAE 123 (310)
T ss_pred EEEECCCC---cHHHHHHHHHCCCEEEEeCCC
Confidence 99996432 344677899999 99999763
No 42
>PRK08197 threonine synthase; Validated
Probab=99.54 E-value=1.5e-13 Score=134.67 Aligned_cols=107 Identities=17% Similarity=0.182 Sum_probs=89.3
Q ss_pred ccccCCCCcCccCCCCccCCC-CeEEEEecCCCCCCCCChhHhhHHhhHHHhhhCCCCeEEE-eCcccchHHHHHHHHHH
Q 020509 86 ISFLNNTCPFLGDDMIMRDED-RCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVT-CGGCQSAHATAVAVSCA 163 (325)
Q Consensus 86 i~~l~~~tp~l~~~~Ls~~~G-~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G~~~LVT-~GG~QSNH~~AtAaaAa 163 (325)
+++-.-.||++..++|++..| .+||+|+|++++ .|.+|.|...+.+.+|++.|+++||+ ..| ||+.|+|++|+
T Consensus 73 vslgeG~TPL~~~~~l~~~~G~~~l~~K~E~~nP--tGSfKdRga~~~i~~a~~~g~~~vv~aSsG---N~g~alA~~aa 147 (394)
T PRK08197 73 VSLGEGMTPLLPLPRLGKALGIGRLWVKDEGLNP--TGSFKARGLAVGVSRAKELGVKHLAMPTNG---NAGAAWAAYAA 147 (394)
T ss_pred CccCcCCCCceEhHHHHHHhCCCcEEEEeCCCCC--CcCcHHhHHHHHHHHHHHcCCCEEEEeCCc---HHHHHHHHHHH
Confidence 445556677777777777777 499999999987 48999999999999999999999996 222 99999999999
Q ss_pred HhCCeEEEEeccccCCccchhhHHHHhCC-eEEEECCC
Q 020509 164 ERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRT 200 (325)
Q Consensus 164 ~lGLkcvlvlrge~~~~~tGN~ll~~LlG-~V~~V~r~ 200 (325)
++|++|++|+.... ...+..+++.+| +|+.++..
T Consensus 148 ~~G~~~~v~vp~~~---~~~k~~~~~~~GA~Vi~v~~~ 182 (394)
T PRK08197 148 RAGIRATIFMPADA---PEITRLECALAGAELYLVDGL 182 (394)
T ss_pred HcCCcEEEEEcCCC---CHHHHHHHHHcCCEEEEECCC
Confidence 99999999997543 346788899999 99999753
No 43
>PRK11761 cysM cysteine synthase B; Provisional
Probab=99.54 E-value=1.4e-13 Score=130.49 Aligned_cols=103 Identities=15% Similarity=0.192 Sum_probs=85.1
Q ss_pred CCCcCccCCCCccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHhhhCCC----CeEEEeCcccchHHHHHHHHHHHhC
Q 020509 91 NTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSAHATAVAVSCAERG 166 (325)
Q Consensus 91 ~~tp~l~~~~Ls~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G~----~~LVT~GG~QSNH~~AtAaaAa~lG 166 (325)
..||++..++|+...|.+||+|+|++++ .|.+|.|...+++.+|++.|. ++||+. ...||+.|+|++|+.+|
T Consensus 11 g~TPl~~~~~l~~~~g~~i~~K~E~~np--tGS~K~R~a~~~~~~a~~~g~~~~g~~vv~a--SsGN~g~alA~~a~~~G 86 (296)
T PRK11761 11 GNTPLVKLQRLPPDRGNTILAKLEGNNP--AGSVKDRPALSMIVQAEKRGEIKPGDTLIEA--TSGNTGIALAMIAAIKG 86 (296)
T ss_pred CCCceEeccccccCCCCEEEEEEcccCC--CCCchhHHHHHHHHHHHHcCCCCCCCEEEEe--CCChHHHHHHHHHHHcC
Confidence 3455555555555557899999999988 589999999999999999997 789884 56789999999999999
Q ss_pred CeEEEEeccccCCccchhhHHHHhCC-eEEEECCC
Q 020509 167 LKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRT 200 (325)
Q Consensus 167 Lkcvlvlrge~~~~~tGN~ll~~LlG-~V~~V~r~ 200 (325)
++|++++.... ...+..+++.+| +|+.++..
T Consensus 87 ~~~~i~~p~~~---~~~k~~~~~~~GA~v~~~~~~ 118 (296)
T PRK11761 87 YRMKLIMPENM---SQERRAAMRAYGAELILVPKE 118 (296)
T ss_pred CCEEEEECCCC---CHHHHHHHHHcCCEEEEeCCC
Confidence 99999996532 346788899999 99999863
No 44
>PRK07591 threonine synthase; Validated
Probab=99.52 E-value=1.8e-13 Score=135.80 Aligned_cols=106 Identities=19% Similarity=0.278 Sum_probs=89.0
Q ss_pred ccCCCCcCccCCCCccCCC-CeEEEEecCCCCCCCCChhHhhHHhhHHHhhhCCCCeEEEeCcccchHHHHHHHHHHHhC
Q 020509 88 FLNNTCPFLGDDMIMRDED-RCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERG 166 (325)
Q Consensus 88 ~l~~~tp~l~~~~Ls~~~G-~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G~~~LVT~GG~QSNH~~AtAaaAa~lG 166 (325)
.-.-.||++..++|++..| .+||+|+|++++ .|++|.|...+.+..|++.|+++|++. ...||+.|+|++|+++|
T Consensus 85 l~eG~TPLv~~~~l~~~lG~~~l~~K~E~~nP--tGSfKdRga~~~v~~A~~~g~~~vv~a--SsGN~g~alA~~aa~~G 160 (421)
T PRK07591 85 LGPGFTPLVKADRLARELGLKNLYIKDDSVNP--THSFKDRVVSVALTAARELGFTTVACA--STGNLANSVAAHAARAG 160 (421)
T ss_pred CCCCCCcceEhHHHHHHhCCCcEEEEeCCCCC--ccChHHHHHHHHHHHHHHcCCCEEEEe--CCCHHHHHHHHHHHHcC
Confidence 3344577777777777777 499999999986 479999999999999999999998763 66899999999999999
Q ss_pred CeEEEEeccccCCccchhhHHHHhCC-eEEEECCC
Q 020509 167 LKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRT 200 (325)
Q Consensus 167 Lkcvlvlrge~~~~~tGN~ll~~LlG-~V~~V~r~ 200 (325)
++|++|+... ...+++.+++.+| +|+.|+..
T Consensus 161 l~~~I~vP~~---~~~~k~~~~~~~GA~Vi~v~g~ 192 (421)
T PRK07591 161 LDSCVFIPAD---LEAGKIVGTLVYGPTLVAVDGN 192 (421)
T ss_pred CCEEEEEcCC---CCHHHHHHHHHcCCEEEEECCC
Confidence 9999999653 3457888899999 99999863
No 45
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=99.51 E-value=6.7e-14 Score=138.12 Aligned_cols=107 Identities=10% Similarity=0.097 Sum_probs=82.7
Q ss_pred CCCcCccCCCCccCCC-CeEEEEecCC-CCCC----CCCh-------------hHhhHH--hhHHHhhhCCCCeEEEeCc
Q 020509 91 NTCPFLGDDMIMRDED-RCFYVVRDDL-LHPL----VNGN-------------KARKMD--ALLPLLEDHIVTDLVTCGG 149 (325)
Q Consensus 91 ~~tp~l~~~~Ls~~~G-~~l~IKRDDL-~h~~----lgGN-------------K~RKLe--ylL~dA~~~G~~~LVT~GG 149 (325)
.+||++..++|++..| .+||+||||+ ++++ -||| |.|||+ +++.++++.+++.+..+.+
T Consensus 43 ~~TPL~~~~~l~~~~G~~~v~~K~E~~q~ptgSFK~RG~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~a 122 (399)
T PRK08206 43 APTPLVALPDLAAELGVGSILVKDESYRFGLNAFKALGGAYAVARLLAEKLGLDISELSFEELTSGEVREKLGDITFATA 122 (399)
T ss_pred CCCCCcchHHHHHHhCCCcEEEecccCcCCCCChHHhhHHHHHHHHHHHHhCCCcccCCHHHhhhhHHHHhccCCEEEEe
Confidence 4666666666777777 5999999997 4655 5555 566665 7788888888888777778
Q ss_pred ccchHHHHHHHHHHHhCCeEEEEeccccCCccchhhHHHHhCC-eEEEECCC
Q 020509 150 CQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRT 200 (325)
Q Consensus 150 ~QSNH~~AtAaaAa~lGLkcvlvlrge~~~~~tGN~ll~~LlG-~V~~V~r~ 200 (325)
...||++|+|++|+.+|++|+++|....+ ......++.+| +|+.++..
T Consensus 123 SsGN~g~alA~~a~~~G~~~~Ivvp~~~~---~~k~~~i~~~GA~Vi~v~~~ 171 (399)
T PRK08206 123 TDGNHGRGVAWAAQQLGQKAVIYMPKGSS---EERVDAIRALGAECIITDGN 171 (399)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEECCCCC---HHHHHHHHHcCCEEEEeCCC
Confidence 99999999999999999999999975432 22334578899 99999853
No 46
>PRK06260 threonine synthase; Validated
Probab=99.49 E-value=4.9e-13 Score=131.27 Aligned_cols=109 Identities=18% Similarity=0.176 Sum_probs=90.0
Q ss_pred ccccCCCCcCccCCCCccCCCC-eEEEEecCCCCCCCCChhHhhHHhhHHHhhhCCCCeEEEeCcccchHHHHHHHHHHH
Q 020509 86 ISFLNNTCPFLGDDMIMRDEDR-CFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAE 164 (325)
Q Consensus 86 i~~l~~~tp~l~~~~Ls~~~G~-~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G~~~LVT~GG~QSNH~~AtAaaAa~ 164 (325)
++.....||++..++|++..|. +||+|+|+++++ |.+|-|...+.+..|++.|.++||+. ...||+.|+|++|++
T Consensus 61 v~l~~G~TPLv~~~~l~~~~g~~~l~~K~E~~nPT--GSfKdRga~~~v~~a~~~g~~~vv~a--SsGN~g~alA~~aa~ 136 (397)
T PRK06260 61 VSLNEGGTPLYRCPNLEKELGVKELYVKHEGANPT--GSFKDRGMTVGVTKALELGVKTVACA--STGNTSASLAAYAAR 136 (397)
T ss_pred ccCCCCCCCeEEchhhHHHhCCCcEEEEeCCCCCC--cCcHHHHHHHHHHHHHHcCCCEEEEe--CCcHHHHHHHHHHHH
Confidence 4445566777777777777777 999999999874 89999999999999999999999883 455999999999999
Q ss_pred hCCeEEEEeccccCCccchhhHHHHhCC-eEEEECCC
Q 020509 165 RGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRT 200 (325)
Q Consensus 165 lGLkcvlvlrge~~~~~tGN~ll~~LlG-~V~~V~r~ 200 (325)
+|++|++|+.... ....++..++.+| +|+.++.+
T Consensus 137 ~G~~~~i~vP~~~--~~~~k~~~~~~~GA~vi~v~~~ 171 (397)
T PRK06260 137 AGLKCYVLLPAGK--VALGKLAQALLHGAKVLEVDGN 171 (397)
T ss_pred cCCcEEEEEeCCC--ccHHHHHHHHhcCCEEEEECCc
Confidence 9999999996431 2346777788999 99999763
No 47
>PRK07048 serine/threonine dehydratase; Validated
Probab=99.48 E-value=5.5e-13 Score=126.88 Aligned_cols=101 Identities=17% Similarity=0.197 Sum_probs=79.4
Q ss_pred CCcCccCCCCccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHhh-hCCCCeEEEeCcccchHHHHHHHHHHHhCCeEE
Q 020509 92 TCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLE-DHIVTDLVTCGGCQSAHATAVAVSCAERGLKSH 170 (325)
Q Consensus 92 ~tp~l~~~~Ls~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~-~~G~~~LVT~GG~QSNH~~AtAaaAa~lGLkcv 170 (325)
+||++..+++++..|.+||+||||++++ |.-|.|=-.+.+..+. +.++++||+.++ +||++|+|++|+.+|++|+
T Consensus 24 ~TPl~~~~~l~~~~g~~i~~K~E~~npt--GS~K~R~a~~~i~~~~~~~~~~~vv~aSs--GN~g~alA~~a~~~G~~~~ 99 (321)
T PRK07048 24 RTPVLTSRTADARTGAQVFFKCENFQRM--GAFKFRGAYNALSQFSPEQRRAGVVTFSS--GNHAQAIALSARLLGIPAT 99 (321)
T ss_pred CCCCccchhhHHhcCCeEEEEeccCCCC--CCeeHHHHHHHHHhhhHhhcCCcEEEeCC--CHHHHHHHHHHHHcCCCEE
Confidence 4555555556666688999999999874 4557776666666655 456788999875 8999999999999999999
Q ss_pred EEeccccCCccchhhHHHHhCC-eEEEECC
Q 020509 171 LLLRGEQPQILTGYNLISTIYG-KVTYVPR 199 (325)
Q Consensus 171 lvlrge~~~~~tGN~ll~~LlG-~V~~V~r 199 (325)
+++.... ...+..+++.+| +|+.++.
T Consensus 100 vvvp~~~---~~~k~~~~~~~GAeV~~~~~ 126 (321)
T PRK07048 100 IVMPQDA---PAAKVAATRGYGGEVVTYDR 126 (321)
T ss_pred EEECCCC---CHHHHHHHHHCCCEEEEECC
Confidence 9997643 355778889999 9999985
No 48
>PRK05638 threonine synthase; Validated
Probab=99.47 E-value=1.2e-12 Score=130.38 Aligned_cols=102 Identities=12% Similarity=0.154 Sum_probs=86.5
Q ss_pred CCCCcCccCCCCccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHhhhCCCCeEEEeCcccchHHHHHHHHHHHhCCeE
Q 020509 90 NNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKS 169 (325)
Q Consensus 90 ~~~tp~l~~~~Ls~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G~~~LVT~GG~QSNH~~AtAaaAa~lGLkc 169 (325)
.-.||++.. ++++..|.+||+|+|++++ .|.+|-|...+.+.+|++.|.++||+ +...||+.|+|++|++.|++|
T Consensus 64 ~G~TPLv~~-~~~~~~g~~l~~K~E~~nP--tGSfKdR~a~~~i~~a~~~g~~~vv~--aSsGN~g~alA~~aa~~G~~~ 138 (442)
T PRK05638 64 EGGTPLIRA-RISEKLGENVYIKDETRNP--TGSFRDRLATVAVSYGLPYAANGFIV--ASDGNAAASVAAYSARAGKEA 138 (442)
T ss_pred CCCCcEEcc-cchHHhCCeEEEEeCCCCC--CCChHHHHHHHHHHHHHHcCCCEEEE--eCCChHHHHHHHHHHHcCCCE
Confidence 345666655 3555568899999999987 48999999999999999999999988 466899999999999999999
Q ss_pred EEEeccccCCccchhhHHHHhCC-eEEEECC
Q 020509 170 HLLLRGEQPQILTGYNLISTIYG-KVTYVPR 199 (325)
Q Consensus 170 vlvlrge~~~~~tGN~ll~~LlG-~V~~V~r 199 (325)
++|+... ....++.+++.+| +|+.|+.
T Consensus 139 ~i~vp~~---~~~~k~~~~~~~GA~vi~v~~ 166 (442)
T PRK05638 139 FVVVPRK---VDKGKLIQMIAFGAKIIRYGE 166 (442)
T ss_pred EEEEeCC---CCHHHHHHHHhcCcEEEEECC
Confidence 9999653 3567888899999 9999974
No 49
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=99.45 E-value=1.4e-12 Score=124.72 Aligned_cols=103 Identities=15% Similarity=0.113 Sum_probs=83.3
Q ss_pred CCCcCccCCCCccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHhh-hCCCCeEEEeCcccchHHHHHHHHHHHhCCeE
Q 020509 91 NTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLE-DHIVTDLVTCGGCQSAHATAVAVSCAERGLKS 169 (325)
Q Consensus 91 ~~tp~l~~~~Ls~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~-~~G~~~LVT~GG~QSNH~~AtAaaAa~lGLkc 169 (325)
.+||++..++|++..|.+||+|+|++++ .|.+|.|+..+.+..+. +.+.++||+. ...||+.|+|++|+++|++|
T Consensus 18 ~~TPl~~~~~l~~~~g~~l~~K~E~~np--tGS~K~R~a~~~i~~~~~~~~~~~vv~a--SsGN~g~alA~~a~~~G~~~ 93 (317)
T TIGR02991 18 EETPLVESPSLSELCGVPVHLKLEHRQT--TGSFKLRGATNAVLSLSDTQRAAGVVAA--STGNHGRALAYAAAEEGVRA 93 (317)
T ss_pred CCCCceechhhHHhhCCeEEEEeccCCC--CCCcHHHHHHHHHHhhhHhccCCeEEEE--CCCHHHHHHHHHHHHhCCCE
Confidence 4566666666666668899999999987 48899999999998765 4567778754 45899999999999999999
Q ss_pred EEEeccccCCccchhhHHHHhCC-eEEEECCC
Q 020509 170 HLLLRGEQPQILTGYNLISTIYG-KVTYVPRT 200 (325)
Q Consensus 170 vlvlrge~~~~~tGN~ll~~LlG-~V~~V~r~ 200 (325)
++++.... ...+...++.+| +|+.++..
T Consensus 94 ~v~~p~~~---~~~k~~~~~~~GA~V~~~~~~ 122 (317)
T TIGR02991 94 TICMSELV---PQNKVDEIRRLGAEVRIVGRS 122 (317)
T ss_pred EEEcCCCC---CHHHHHHHHHcCCEEEEeCCC
Confidence 99996432 346777889999 99999864
No 50
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=99.45 E-value=1.2e-12 Score=129.53 Aligned_cols=98 Identities=17% Similarity=0.277 Sum_probs=76.6
Q ss_pred CCCcCccCCCCccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHh-hhCCCCeEEEeCcccchHHHHHHHHHHHhCCeE
Q 020509 91 NTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLL-EDHIVTDLVTCGGCQSAHATAVAVSCAERGLKS 169 (325)
Q Consensus 91 ~~tp~l~~~~Ls~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA-~~~G~~~LVT~GG~QSNH~~AtAaaAa~lGLkc 169 (325)
..||+...++|++..|.+||+|+||++++ |++|.|...+.|..+ ....++.||+.+ ..||+.++|++|+++|++|
T Consensus 15 ~~TPl~~~~~ls~~~g~~iy~K~E~~~pt--GSfK~RgA~~~i~~l~~~~~~~gvv~aS--sGN~g~a~A~~a~~~G~~~ 90 (409)
T TIGR02079 15 PHTPLQLNERLSEKYGANIYLKREDLQPV--RSYKIRGAYNFLKQLSDAQLAKGVVCAS--AGNHAQGFAYACRHLGVHG 90 (409)
T ss_pred CCCCccccHHHHHHhCCEEEEEecCCCCC--CCcHHHHHHHHHHhCCHHhhCCEEEEEC--ccHHHHHHHHHHHHcCCCE
Confidence 45666666666666688999999999874 799999998888775 344567888885 6789999999999999999
Q ss_pred EEEeccccCCccchhhHHHHhCC-eEE
Q 020509 170 HLLLRGEQPQILTGYNLISTIYG-KVT 195 (325)
Q Consensus 170 vlvlrge~~~~~tGN~ll~~LlG-~V~ 195 (325)
+++|.... +......++.+| +++
T Consensus 91 ~iv~p~~~---~~~k~~~~~~~GA~vv 114 (409)
T TIGR02079 91 TVFMPATT---PKQKIDRVKIFGGEFI 114 (409)
T ss_pred EEEECCCC---CHHHHHHHHHcCCCee
Confidence 99996543 223455678999 854
No 51
>PRK08329 threonine synthase; Validated
Probab=99.45 E-value=1.8e-12 Score=125.45 Aligned_cols=97 Identities=15% Similarity=0.166 Sum_probs=82.7
Q ss_pred CCCCcCccCCCCccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHhhhCCCCeEEEeCcccchHHHHHHHHHHHhCCeE
Q 020509 90 NNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKS 169 (325)
Q Consensus 90 ~~~tp~l~~~~Ls~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G~~~LVT~GG~QSNH~~AtAaaAa~lGLkc 169 (325)
+-.||++.. +.+||+|+|+++++ |.+|-|...+.+..|++.|+++||+.. ..||++|+|++|+++|++|
T Consensus 62 eg~Tpl~~~-------~~~l~~K~E~~nPt--GSfKdRga~~~i~~a~~~g~~~vv~aS--sGN~g~alA~~aa~~G~~~ 130 (347)
T PRK08329 62 PPITPTVKR-------SIKVYFKLDYLQPT--GSFKDRGTYVTVAKLKEEGINEVVIDS--SGNAALSLALYSLSEGIKV 130 (347)
T ss_pred CCCCccccC-------CCeEEEEeCCCCCC--cCCHHHHHHHHHHHHHHcCCCEEEEEC--CCcHHHHHHHHHHHcCCcE
Confidence 345666543 35899999999875 899999999999999999999999975 6789999999999999999
Q ss_pred EEEeccccCCccchhhHHHHhCC-eEEEECCC
Q 020509 170 HLLLRGEQPQILTGYNLISTIYG-KVTYVPRT 200 (325)
Q Consensus 170 vlvlrge~~~~~tGN~ll~~LlG-~V~~V~r~ 200 (325)
++++... ...+++.+++.+| +|+.++..
T Consensus 131 ~v~vp~~---~~~~k~~~~~~~GA~v~~v~~~ 159 (347)
T PRK08329 131 HVFVSYN---ASKEKISLLSRLGAELHFVEGD 159 (347)
T ss_pred EEEECCC---ChHHHHHHHHHcCCEEEEECCC
Confidence 9999643 3467889999999 99999753
No 52
>PRK08198 threonine dehydratase; Provisional
Probab=99.43 E-value=1.6e-12 Score=127.20 Aligned_cols=101 Identities=16% Similarity=0.183 Sum_probs=80.6
Q ss_pred CCcCccCCCCccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHhh-hCCCCeEEEeCcccchHHHHHHHHHHHhCCeEE
Q 020509 92 TCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLE-DHIVTDLVTCGGCQSAHATAVAVSCAERGLKSH 170 (325)
Q Consensus 92 ~tp~l~~~~Ls~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~-~~G~~~LVT~GG~QSNH~~AtAaaAa~lGLkcv 170 (325)
+||+...++|++..|.+||+||||++++ |..|.|-..+.+.++. +.+.++||+..+ .||+.++|++|+++|++|+
T Consensus 22 ~TPl~~~~~ls~~~g~~i~~K~E~~npt--GS~K~R~a~~~i~~~~~~~~~~~vv~aSs--GN~g~alA~~a~~~G~~~~ 97 (404)
T PRK08198 22 RTPLEYSRTLSELTGAEVYLKCENLQRT--GSFKIRGAYNKIASLSEEERARGVVAASA--GNHAQGVAYAASLLGIKAT 97 (404)
T ss_pred CCCceehhhHHHHhCCEEEEEECCCCCC--CCCHHHHHHHHHHhccHhhcCCEEEEECC--CHHHHHHHHHHHHcCCCEE
Confidence 4555555555666677999999999874 6799998888888775 566889999865 7899999999999999999
Q ss_pred EEeccccCCccchhhHHHHhCC-eEEEECC
Q 020509 171 LLLRGEQPQILTGYNLISTIYG-KVTYVPR 199 (325)
Q Consensus 171 lvlrge~~~~~tGN~ll~~LlG-~V~~V~r 199 (325)
++|.... +.....+++.+| +|+.++.
T Consensus 98 iv~p~~~---~~~k~~~~~~~GA~Vi~~~~ 124 (404)
T PRK08198 98 IVMPETA---PLSKVKATRSYGAEVVLHGD 124 (404)
T ss_pred EEECCCC---CHHHHHHHHhCCCEEEEECC
Confidence 9996543 334566788999 9999974
No 53
>PRK06815 hypothetical protein; Provisional
Probab=99.41 E-value=2.5e-12 Score=122.59 Aligned_cols=103 Identities=16% Similarity=0.161 Sum_probs=77.0
Q ss_pred CCCcCccCCCCccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHhh-hCCCCeEEEeCcccchHHHHHHHHHHHhCCeE
Q 020509 91 NTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLE-DHIVTDLVTCGGCQSAHATAVAVSCAERGLKS 169 (325)
Q Consensus 91 ~~tp~l~~~~Ls~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~-~~G~~~LVT~GG~QSNH~~AtAaaAa~lGLkc 169 (325)
.+||++..++|++..|.+||+|+|+++++ |..|.|-..+.+..+. +.+.++||+. ..+||++|+|++|+++|++|
T Consensus 19 ~~TPLv~~~~l~~~~g~~i~~K~E~~npt--gS~KdR~a~~~~~~l~~~~~~~~vv~a--SsGN~g~alA~~a~~~G~~~ 94 (317)
T PRK06815 19 RVTPLEHSPLLSQHTGCEVYLKCEHLQHT--GSFKFRGASNKLRLLNEAQRQQGVITA--SSGNHGQGVALAAKLAGIPV 94 (317)
T ss_pred CCCCccccHhHHHhhCCeEEEEecCCCCC--CCcHHHHHHHHHHhcchhhcCceEEEE--CCChHHHHHHHHHHHhCCCE
Confidence 35555555566666688999999999874 5566665555554332 2235668884 56899999999999999999
Q ss_pred EEEeccccCCccchhhHHHHhCC-eEEEECCC
Q 020509 170 HLLLRGEQPQILTGYNLISTIYG-KVTYVPRT 200 (325)
Q Consensus 170 vlvlrge~~~~~tGN~ll~~LlG-~V~~V~r~ 200 (325)
+++|.... ...++.+++.+| +|+.++..
T Consensus 95 ~i~~p~~~---~~~k~~~~~~~GA~V~~~~~~ 123 (317)
T PRK06815 95 TVYAPEQA---SAIKLDAIRALGAEVRLYGGD 123 (317)
T ss_pred EEEECCCC---CHHHHHHHHHCCCEEEEECCC
Confidence 99996543 356788899999 99999864
No 54
>PRK06382 threonine dehydratase; Provisional
Probab=99.41 E-value=3.9e-12 Score=125.41 Aligned_cols=102 Identities=15% Similarity=0.198 Sum_probs=78.3
Q ss_pred CCcCccCCCCccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHhhhCC-CCeEEEeCcccchHHHHHHHHHHHhCCeEE
Q 020509 92 TCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHI-VTDLVTCGGCQSAHATAVAVSCAERGLKSH 170 (325)
Q Consensus 92 ~tp~l~~~~Ls~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G-~~~LVT~GG~QSNH~~AtAaaAa~lGLkcv 170 (325)
+||+...++|++..|.+||+|+||+++ .|.+|.|...+.+..+.+.+ .+.||+..+ .||+.|+|++|+++|++|+
T Consensus 25 ~TPl~~~~~ls~~~g~~v~~K~E~~np--tGSfK~Rga~~~i~~~~~~~~~~gvv~aSs--GN~g~a~A~aa~~~G~~~~ 100 (406)
T PRK06382 25 RTPLIHSTTFGDEYGGDIYFKLENFQK--TGSFKSRGAVFKFSKLSEDELRNGVITASA--GNHAQGVAYAASINGIDAK 100 (406)
T ss_pred CCCeeEhhhhHHHhCCEEEEEecCCCC--CCCCHHHHHHHHHHhcchhccCCeEEEECC--CHHHHHHHHHHHHcCCCEE
Confidence 455555555566667899999999986 58999999988887765444 356888765 6999999999999999999
Q ss_pred EEeccccCCccchhhHHHHhCC-eEEEECCC
Q 020509 171 LLLRGEQPQILTGYNLISTIYG-KVTYVPRT 200 (325)
Q Consensus 171 lvlrge~~~~~tGN~ll~~LlG-~V~~V~r~ 200 (325)
++|....+ ......++.+| +|+.++..
T Consensus 101 ivmp~~~~---~~k~~~~~~~GA~Vv~~~~~ 128 (406)
T PRK06382 101 IVMPEYTI---PQKVNAVEAYGAHVILTGRD 128 (406)
T ss_pred EEEcCCCH---HHHHHHHHHcCCEEEEECCC
Confidence 99965432 22344577899 99988753
No 55
>PRK09224 threonine dehydratase; Reviewed
Probab=99.41 E-value=3.6e-12 Score=129.50 Aligned_cols=102 Identities=18% Similarity=0.179 Sum_probs=77.5
Q ss_pred CCCcCccCCCCccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHhh-hCCCCeEEEeCcccchHHHHHHHHHHHhCCeE
Q 020509 91 NTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLE-DHIVTDLVTCGGCQSAHATAVAVSCAERGLKS 169 (325)
Q Consensus 91 ~~tp~l~~~~Ls~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~-~~G~~~LVT~GG~QSNH~~AtAaaAa~lGLkc 169 (325)
..||+...++|++..|.+||+||||+.++ |..|.|-..+.+..+. ..+.+.||+.+ .+||+.++|++|+++|++|
T Consensus 19 ~~TPL~~~~~Ls~~~g~~i~lK~E~lqpt--gSfK~RgA~n~i~~l~~~~~~~gvV~aS--aGNha~avA~aa~~lGi~~ 94 (504)
T PRK09224 19 QETPLEKAPKLSARLGNQVLLKREDLQPV--FSFKLRGAYNKMAQLTEEQLARGVITAS--AGNHAQGVALSAARLGIKA 94 (504)
T ss_pred CCCCceehhHhHHHhCCEEEEEecCCCCC--CCChHHHHHHHHHhhhHHhcCCEEEEEC--cCHHHHHHHHHHHHcCCCE
Confidence 45566666666666788999999999653 5789985555555442 34677899986 5799999999999999999
Q ss_pred EEEeccccCCccchhhHHHHhCC-eEEEECC
Q 020509 170 HLLLRGEQPQILTGYNLISTIYG-KVTYVPR 199 (325)
Q Consensus 170 vlvlrge~~~~~tGN~ll~~LlG-~V~~V~r 199 (325)
+++|.... +...+..++.+| +|+.++.
T Consensus 95 ~IvmP~~t---p~~K~~~~r~~GA~Vi~~g~ 122 (504)
T PRK09224 95 VIVMPVTT---PDIKVDAVRAFGGEVVLHGD 122 (504)
T ss_pred EEEECCCC---CHHHHHHHHhCCCEEEEECC
Confidence 99997533 334555678999 9999975
No 56
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=99.40 E-value=4.8e-12 Score=122.87 Aligned_cols=100 Identities=16% Similarity=0.197 Sum_probs=82.5
Q ss_pred CcCccCCCCccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHhhhCCC-CeEEEeCcccchHHHHHHHHHHHhCCeEEE
Q 020509 93 CPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV-TDLVTCGGCQSAHATAVAVSCAERGLKSHL 171 (325)
Q Consensus 93 tp~l~~~~Ls~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G~-~~LVT~GG~QSNH~~AtAaaAa~lGLkcvl 171 (325)
||+...++||+..|.+||+|+||++++ |..|.|-..+.+.++.+.+. ++||+..+ .||+.++|++|+++|++|++
T Consensus 1 TPl~~~~~ls~~~g~~i~~K~E~~~pt--gS~K~R~a~~~i~~~~~~~~~~~vv~aSs--GN~g~alA~~a~~~G~~~~i 76 (380)
T TIGR01127 1 TPLIYSTTLSDITGSEVYLKLENLQKT--GSFKIRGALNKIANLSEDQRQRGVVAASA--GNHAQGVAYAAKKFGIKAVI 76 (380)
T ss_pred CCceehHHHHHHhCCeEEEEecCCCCC--CCcHHHHHHHHHHhcchhccCCEEEEECC--CHHHHHHHHHHHHcCCCEEE
Confidence 455666666766788999999999874 67899999999999987775 56888755 68999999999999999999
Q ss_pred EeccccCCccchhhHHHHhCC-eEEEECC
Q 020509 172 LLRGEQPQILTGYNLISTIYG-KVTYVPR 199 (325)
Q Consensus 172 vlrge~~~~~tGN~ll~~LlG-~V~~V~r 199 (325)
+|.... +..+...++.+| +|+.++.
T Consensus 77 v~p~~~---~~~k~~~~~~~GA~V~~~~~ 102 (380)
T TIGR01127 77 VMPESA---PPSKVKATKSYGAEVILHGD 102 (380)
T ss_pred EEcCCC---cHHHHHHHHHCCCEEEEECC
Confidence 997643 345677889999 9999875
No 57
>PRK12483 threonine dehydratase; Reviewed
Probab=99.36 E-value=1.2e-11 Score=126.57 Aligned_cols=99 Identities=19% Similarity=0.143 Sum_probs=75.9
Q ss_pred CCCcCccCCCCccCCCCeEEEEecCCCCCCCCChhHh----hHHhhHHHhhhCCCCeEEEeCcccchHHHHHHHHHHHhC
Q 020509 91 NTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKAR----KMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERG 166 (325)
Q Consensus 91 ~~tp~l~~~~Ls~~~G~~l~IKRDDL~h~~lgGNK~R----KLeylL~dA~~~G~~~LVT~GG~QSNH~~AtAaaAa~lG 166 (325)
.+||+...++||+..|.+||+||||++++ |.-|.| |+..+..+++ .+.||+..+ .||+.++|.+|+++|
T Consensus 36 ~~TPL~~~~~Ls~~~g~~IylK~E~lqpt--GSfK~RGA~n~i~~l~~~~~---~~GVV~aSa--GNha~gvA~aA~~lG 108 (521)
T PRK12483 36 RETPLQRAPNLSARLGNQVLLKREDLQPV--FSFKIRGAYNKMARLPAEQL---ARGVITASA--GNHAQGVALAAARLG 108 (521)
T ss_pred CCCCeeEchhhhHhhCCEEEEEEcCCCCC--CchHHHHHHHHHHHhHHHHh---cCcEEEECC--CHHHHHHHHHHHHhC
Confidence 45666666666777788999999999874 678999 5555544444 445888766 689999999999999
Q ss_pred CeEEEEeccccCCccchhhHHHHhCC-eEEEECC
Q 020509 167 LKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPR 199 (325)
Q Consensus 167 Lkcvlvlrge~~~~~tGN~ll~~LlG-~V~~V~r 199 (325)
++|+++|.... +.-.+..++.+| +|+.+..
T Consensus 109 i~~~IvmP~~t---p~~Kv~~~r~~GAeVil~g~ 139 (521)
T PRK12483 109 VKAVIVMPRTT---PQLKVDGVRAHGGEVVLHGE 139 (521)
T ss_pred CCEEEEECCCC---CHHHHHHHHHCCCEEEEECC
Confidence 99999996543 233466788999 9999875
No 58
>PRK08526 threonine dehydratase; Provisional
Probab=99.36 E-value=6.9e-12 Score=124.28 Aligned_cols=102 Identities=17% Similarity=0.200 Sum_probs=76.7
Q ss_pred CCCcCccCCCCccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHhhh-CCCCeEEEeCcccchHHHHHHHHHHHhCCeE
Q 020509 91 NTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLED-HIVTDLVTCGGCQSAHATAVAVSCAERGLKS 169 (325)
Q Consensus 91 ~~tp~l~~~~Ls~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~-~G~~~LVT~GG~QSNH~~AtAaaAa~lGLkc 169 (325)
.+||+...++|++..|.+||+||||++++ |..|.|--.+.+..+.+ .+.+.||+ +...||+.++|++|+++|++|
T Consensus 19 ~~TPl~~~~~Ls~~~g~~iylK~E~lqpt--GSfK~RgA~n~i~~l~~~~~~~gVV~--aSaGNhg~avA~aa~~~Gi~~ 94 (403)
T PRK08526 19 NKTPFAYAPFLSKISGAEVYLKKENLQIT--GAYKIRGAYNKIANLSEEQKQHGVIA--ASAGNHAQGVAISAKKFGIKA 94 (403)
T ss_pred CCCCccchHHHHHHhCCeEEEEecCCCCC--CCCHHHHHHHHHHhccHhhcCCEEEE--ECccHHHHHHHHHHHHcCCCE
Confidence 45555655566666678999999999874 67899966666655543 24577888 467899999999999999999
Q ss_pred EEEeccccCCccchhhHHHHhCC-eEEEECC
Q 020509 170 HLLLRGEQPQILTGYNLISTIYG-KVTYVPR 199 (325)
Q Consensus 170 vlvlrge~~~~~tGN~ll~~LlG-~V~~V~r 199 (325)
+++|.... +......++.+| +|+.++.
T Consensus 95 ~IvmP~~~---p~~k~~~~r~~GA~Vv~~g~ 122 (403)
T PRK08526 95 VIVMPEAT---PLLKVSGTKALGAEVILKGD 122 (403)
T ss_pred EEEEcCCC---CHHHHHHHHhCCCEEEEECC
Confidence 99996543 223345588999 9999875
No 59
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=99.35 E-value=1.2e-11 Score=125.71 Aligned_cols=102 Identities=18% Similarity=0.165 Sum_probs=79.0
Q ss_pred CCCcCccCCCCccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHh-hhCCCCeEEEeCcccchHHHHHHHHHHHhCCeE
Q 020509 91 NTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLL-EDHIVTDLVTCGGCQSAHATAVAVSCAERGLKS 169 (325)
Q Consensus 91 ~~tp~l~~~~Ls~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA-~~~G~~~LVT~GG~QSNH~~AtAaaAa~lGLkc 169 (325)
.+||+...++|++..|.+||+||||++++ |..|.|-..+.+..+ .+++.+.|||. ..+||+.++|++|+++|++|
T Consensus 16 ~~TPL~~~~~Ls~~~g~~i~lK~E~lqpt--gSfK~RgA~n~i~~l~~~~~~~gVV~a--SaGNha~~vA~aa~~~Gi~~ 91 (499)
T TIGR01124 16 QETPLQKAAKLSERLGNRILIKREDLQPV--FSFKLRGAYNKMAQLSPEQKARGVIAA--SAGNHAQGVAFSAARLGLKA 91 (499)
T ss_pred CCCCeeehHHHHHHhCCEEEEEecCCCCC--CCCHHHHHHHHHHHhhHHhcCCEEEEE--CCCHHHHHHHHHHHHcCCCE
Confidence 46666666667777788999999999764 578888666666654 45567789986 35699999999999999999
Q ss_pred EEEeccccCCccchhhHHHHhCC-eEEEECC
Q 020509 170 HLLLRGEQPQILTGYNLISTIYG-KVTYVPR 199 (325)
Q Consensus 170 vlvlrge~~~~~tGN~ll~~LlG-~V~~V~r 199 (325)
+++|.... +..++..++.+| +|+.++.
T Consensus 92 ~IvmP~~t---p~~Kv~~~r~~GA~Vvl~g~ 119 (499)
T TIGR01124 92 LIVMPETT---PDIKVDAVRGFGGEVVLHGA 119 (499)
T ss_pred EEEECCCC---CHHHHHHHHhCCCEEEEeCc
Confidence 99996443 334566788999 9998864
No 60
>PRK08638 threonine dehydratase; Validated
Probab=99.35 E-value=1.6e-11 Score=118.62 Aligned_cols=102 Identities=19% Similarity=0.269 Sum_probs=79.2
Q ss_pred CCCcCccCCCCccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHhhh-CCCCeEEEeCcccchHHHHHHHHHHHhCCeE
Q 020509 91 NTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLED-HIVTDLVTCGGCQSAHATAVAVSCAERGLKS 169 (325)
Q Consensus 91 ~~tp~l~~~~Ls~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~-~G~~~LVT~GG~QSNH~~AtAaaAa~lGLkc 169 (325)
.+||++..++|++..|.+||+|+|+++++ |--|.|-..+.+..+.+ .+.++||+.++ .||+.|+|++|+.+|++|
T Consensus 26 ~~TPlv~~~~l~~~~g~~i~~K~E~~npt--GS~KdR~a~~~i~~~~~~~~~~~vv~~Ss--GN~g~alA~~aa~~G~~~ 101 (333)
T PRK08638 26 RKTPLPRSNYLSERCKGEIFLKLENMQRT--GSFKIRGAFNKLSSLTDAEKRKGVVACSA--GNHAQGVALSCALLGIDG 101 (333)
T ss_pred cCCCceechhhHHhhCCeEEEEeccCCcc--CCcHHHHHHHHHHhccHHhcCCeEEEeCC--cHHHHHHHHHHHHcCCCE
Confidence 34555555555566678999999999864 56788888888776643 56778888766 589999999999999999
Q ss_pred EEEeccccCCccchhhHHHHhCC-eEEEECC
Q 020509 170 HLLLRGEQPQILTGYNLISTIYG-KVTYVPR 199 (325)
Q Consensus 170 vlvlrge~~~~~tGN~ll~~LlG-~V~~V~r 199 (325)
++++.... ...+..+++.+| +|++++.
T Consensus 102 ~iv~p~~~---~~~k~~~~~~~GA~V~~~~~ 129 (333)
T PRK08638 102 KVVMPKGA---PKSKVAATCGYGAEVVLHGD 129 (333)
T ss_pred EEEeCCCC---cHHHHHHHHHcCCEEEEECc
Confidence 99996543 345677889999 9999864
No 61
>PLN02970 serine racemase
Probab=99.31 E-value=4e-11 Score=115.09 Aligned_cols=164 Identities=16% Similarity=0.167 Sum_probs=106.5
Q ss_pred CCCcCccCCCCccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHhh-hCCCCeEEEeCcccchHHHHHHHHHHHhCCeE
Q 020509 91 NTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLE-DHIVTDLVTCGGCQSAHATAVAVSCAERGLKS 169 (325)
Q Consensus 91 ~~tp~l~~~~Ls~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~-~~G~~~LVT~GG~QSNH~~AtAaaAa~lGLkc 169 (325)
.+||+...++|++..|.+||+|+|+++++ |.-|.|-..+.+..+. +.+.++||+.. ..||+.|+|++|+.+|++|
T Consensus 26 ~~TPL~~~~~l~~~~g~~i~~K~E~~npt--GSfKdRga~~~i~~~~~~~~~~~vv~aS--sGN~g~alA~~a~~~G~~~ 101 (328)
T PLN02970 26 HRTPVLTSSSLDALAGRSLFFKCECFQKG--GAFKFRGACNAIFSLSDDQAEKGVVTHS--SGNHAAALALAAKLRGIPA 101 (328)
T ss_pred CCCCeeechhhHHhhCCeEEEEecCCCCC--CCcHHHHHHHHHHHhhHhhcCCeEEEEC--CcHHHHHHHHHHHHcCCCE
Confidence 34555655566666678999999999875 6778998888888775 45577888864 5789999999999999999
Q ss_pred EEEeccccCCccchhhHHHHhCC-eEEEECCCCccchHHHHHHHHHHhcccc------c-chhhHHHHHHHHHHHhhhhh
Q 020509 170 HLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNN------G-DVVWCNEIFEASLTAQKSRA 241 (325)
Q Consensus 170 vlvlrge~~~~~tGN~ll~~LlG-~V~~V~r~~y~~kda~~e~~~~~~~Gas------G-~vr~~~eI~~qe~~~q~~~~ 241 (325)
++||....+ ......++.+| +|+.++.. +....+..+.+.+.. |.- . .....+.-++.|+.+|+
T Consensus 102 ~ivvp~~~~---~~k~~~~~~~GA~Vi~~~~~-~~~~~~~a~~la~~~-g~~~~~~~~n~~~~~g~~t~g~Ei~~ql--- 173 (328)
T PLN02970 102 YIVVPKNAP---ACKVDAVIRYGGIITWCEPT-VESREAVAARVQQET-GAVLIHPYNDGRVISGQGTIALEFLEQV--- 173 (328)
T ss_pred EEEECCCCC---HHHHHHHHhcCCEEEEeCCC-HHHHHHHHHHHHHhc-CCEEeCCCCCcchhhehHHHHHHHHHhc---
Confidence 999975432 22234578899 99999864 322222222222211 110 0 00111233444443333
Q ss_pred ccccccchhhhhhccCCcEEEEeCCCcchhhhhhhccc
Q 020509 242 SCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLVLIPG 279 (325)
Q Consensus 242 ~~~~~~d~~~~l~~~g~~~y~ip~GGSnaiG~lGyi~~ 279 (325)
. .++.+++..|||++..|+--+++.
T Consensus 174 ------------~-~~D~vv~~vG~GG~~~Gi~~~lk~ 198 (328)
T PLN02970 174 ------------P-ELDVIIVPISGGGLISGIALAAKA 198 (328)
T ss_pred ------------c-CCCEEEEeeCchHHHHHHHHHHHh
Confidence 2 367778888888888887666543
No 62
>PRK07334 threonine dehydratase; Provisional
Probab=99.27 E-value=6e-11 Score=116.83 Aligned_cols=101 Identities=15% Similarity=0.142 Sum_probs=78.0
Q ss_pred CCcCccCCCCccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHhh-hCCCCeEEEeCcccchHHHHHHHHHHHhCCeEE
Q 020509 92 TCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLE-DHIVTDLVTCGGCQSAHATAVAVSCAERGLKSH 170 (325)
Q Consensus 92 ~tp~l~~~~Ls~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~-~~G~~~LVT~GG~QSNH~~AtAaaAa~lGLkcv 170 (325)
+||++..++|++..|.+||+|+|+++++ |..|.|-..+.+..+. +.+.+.||+.. ..||++|+|++|+++|++|+
T Consensus 23 ~TPl~~~~~l~~~~g~~l~~K~E~~npt--GS~KdR~a~~~i~~~~~~~~~~~vv~aS--sGN~g~alA~~a~~~G~~~~ 98 (403)
T PRK07334 23 RTPCVHSRTLSQITGAEVWLKFENLQFT--ASFKERGALNKLLLLTEEERARGVIAMS--AGNHAQGVAYHAQRLGIPAT 98 (403)
T ss_pred CCCccchHHHHHhhCCeEEEEeccCCCC--CCchHHHHHHHHHhcCHHHhCCcEEEEC--CcHHHHHHHHHHHHcCCCEE
Confidence 4555555556666678999999999874 6799997777776653 34456688864 47899999999999999999
Q ss_pred EEeccccCCccchhhHHHHhCC-eEEEECC
Q 020509 171 LLLRGEQPQILTGYNLISTIYG-KVTYVPR 199 (325)
Q Consensus 171 lvlrge~~~~~tGN~ll~~LlG-~V~~V~r 199 (325)
+++.... ...+...++.+| +|+.++.
T Consensus 99 iv~p~~~---~~~k~~~~~~~GA~v~~~~~ 125 (403)
T PRK07334 99 IVMPRFT---PTVKVERTRGFGAEVVLHGE 125 (403)
T ss_pred EEECCCC---CHHHHHHHHHcCCEEEEECc
Confidence 9996543 345677889999 9998864
No 63
>PLN02550 threonine dehydratase
Probab=99.23 E-value=1.1e-10 Score=121.29 Aligned_cols=103 Identities=17% Similarity=0.146 Sum_probs=76.9
Q ss_pred CCCcCccCCCCccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHh-hhCCCCeEEEeCcccchHHHHHHHHHHHhCCeE
Q 020509 91 NTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLL-EDHIVTDLVTCGGCQSAHATAVAVSCAERGLKS 169 (325)
Q Consensus 91 ~~tp~l~~~~Ls~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA-~~~G~~~LVT~GG~QSNH~~AtAaaAa~lGLkc 169 (325)
.+||+...++||+..|.+||+||||++++ |.-|.|-..+.+..+ .+.....||+. ...||+.++|++|+++|++|
T Consensus 108 ~~TPL~~s~~LS~~~g~~IylK~E~lqpt--GSFK~RGA~n~I~~L~~e~~~~GVV~a--SaGNhAqgvA~aA~~lGika 183 (591)
T PLN02550 108 IESPLQLAKKLSERLGVKVLLKREDLQPV--FSFKLRGAYNMMAKLPKEQLDKGVICS--SAGNHAQGVALSAQRLGCDA 183 (591)
T ss_pred cCChhhhhHHhhHhhCCEEEEEEcCCCCC--CcHHHHHHHHHHHHHHHhcCCCCEEEE--CCCHHHHHHHHHHHHcCCCE
Confidence 56888888888888899999999999875 445555444444443 33445668884 67899999999999999999
Q ss_pred EEEeccccCCccchhhHHHHhCC-eEEEECCC
Q 020509 170 HLLLRGEQPQILTGYNLISTIYG-KVTYVPRT 200 (325)
Q Consensus 170 vlvlrge~~~~~tGN~ll~~LlG-~V~~V~r~ 200 (325)
+++|....+ ..-+...+.+| +|+.++..
T Consensus 184 ~IvmP~~tp---~~Kv~~~r~~GAeVvl~g~~ 212 (591)
T PLN02550 184 VIAMPVTTP---EIKWQSVERLGATVVLVGDS 212 (591)
T ss_pred EEEECCCCC---HHHHHHHHHcCCEEEEeCCC
Confidence 999965432 22344568899 99999743
No 64
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=99.20 E-value=2.8e-10 Score=112.73 Aligned_cols=104 Identities=15% Similarity=0.056 Sum_probs=76.8
Q ss_pred CCCcCccCCCCccCCC-CeEEEEecCCCCCCCCChhHhhHHhhHHHh--hhCC---------------------CCeEEE
Q 020509 91 NTCPFLGDDMIMRDED-RCFYVVRDDLLHPLVNGNKARKMDALLPLL--EDHI---------------------VTDLVT 146 (325)
Q Consensus 91 ~~tp~l~~~~Ls~~~G-~~l~IKRDDL~h~~lgGNK~RKLeylL~dA--~~~G---------------------~~~LVT 146 (325)
.+||++..++|++..| .+||+|+|++..+ .|--|.|-.-+.+..+ ++.| ..+||+
T Consensus 40 ~~TPL~~~~~L~~~~g~~~v~lK~E~~q~~-tGSFK~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~vv~ 118 (396)
T TIGR03528 40 QPTPLAELDNLAKHLGVGSILVKDESYRFG-LNAFKVLGGSYAIGKYLAEKLGKDISELSFEKLKSNEIREKLGDITFVT 118 (396)
T ss_pred cCCCCcchHHHHHHhCCCcEEEeeCCCCCC-cCChHHHHHHHHHHHHHHHHhCCCcccccHHHhhhHHHHhhccCcEEEE
Confidence 5677777777777778 5999999998654 4677888766666553 2222 236666
Q ss_pred eCcccchHHHHHHHHHHHhCCeEEEEeccccCCccchhhHHHHhCC-eEEEECCC
Q 020509 147 CGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRT 200 (325)
Q Consensus 147 ~GG~QSNH~~AtAaaAa~lGLkcvlvlrge~~~~~tGN~ll~~LlG-~V~~V~r~ 200 (325)
. ...||++|+|++|+++|++|++||....+ ......++.+| +|+.++.+
T Consensus 119 a--SsGN~g~alA~~aa~~Gi~~~IvvP~~~~---~~K~~~ir~~GAeVi~~~~~ 168 (396)
T TIGR03528 119 A--TDGNHGRGVAWAANQLGQKSVVYMPKGSA---QIRLENIRAEGAECTITDLN 168 (396)
T ss_pred E--CccHHHHHHHHHHHHcCCCEEEEEeCCCc---HHHHHHHHhcCCEEEEECCC
Confidence 4 56799999999999999999999975432 23455668899 99999753
No 65
>PRK08639 threonine dehydratase; Validated
Probab=99.19 E-value=3e-10 Score=112.72 Aligned_cols=100 Identities=17% Similarity=0.278 Sum_probs=72.0
Q ss_pred CCCcCccCCCCccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHh-hhCCCCeEEEeCcccchHHHHHHHHHHHhCCeE
Q 020509 91 NTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLL-EDHIVTDLVTCGGCQSAHATAVAVSCAERGLKS 169 (325)
Q Consensus 91 ~~tp~l~~~~Ls~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA-~~~G~~~LVT~GG~QSNH~~AtAaaAa~lGLkc 169 (325)
.+||+...++|++..|.+||+|+||++++ |--|.|-..+.+..+ ...+.++||+.. ..||+.++|++|+++|++|
T Consensus 24 ~~TPl~~~~~ls~~~g~~l~~K~E~~~pt--GSfK~RgA~~~i~~l~~~~~~~~Vv~aS--sGN~g~alA~~a~~~G~~~ 99 (420)
T PRK08639 24 PETPLQRNDYLSEKYGANVYLKREDLQPV--RSYKLRGAYNAISQLSDEELAAGVVCAS--AGNHAQGVAYACRHLGIPG 99 (420)
T ss_pred cCCCccchHHHHHHhCCEEEEEecCCCCC--CCcHHHHHHHHHHhCCHHhhCCEEEEEC--ccHHHHHHHHHHHHcCCCE
Confidence 45555555556666678999999999874 566777666666553 233467888876 5689999999999999999
Q ss_pred EEEeccccCCccchhhHHHHhCC-eEEEE
Q 020509 170 HLLLRGEQPQILTGYNLISTIYG-KVTYV 197 (325)
Q Consensus 170 vlvlrge~~~~~tGN~ll~~LlG-~V~~V 197 (325)
+++|.... +......++.+| +|+.|
T Consensus 100 ~IvmP~~~---~~~k~~~~r~~GA~vv~v 125 (420)
T PRK08639 100 VIFMPVTT---PQQKIDQVRFFGGEFVEI 125 (420)
T ss_pred EEEECCCC---hHHHHHHHHHcCCCeeEE
Confidence 99996433 223455678999 85433
No 66
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=99.13 E-value=9.5e-10 Score=108.35 Aligned_cols=103 Identities=13% Similarity=0.022 Sum_probs=79.1
Q ss_pred CCCcCccCCCCccCCC-CeEEEEecCCCCCCCCChhHhhHHhhHHHhhh-----------------------CCCCeEEE
Q 020509 91 NTCPFLGDDMIMRDED-RCFYVVRDDLLHPLVNGNKARKMDALLPLLED-----------------------HIVTDLVT 146 (325)
Q Consensus 91 ~~tp~l~~~~Ls~~~G-~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~-----------------------~G~~~LVT 146 (325)
.+||++..++|++..| .+||+|.|.+..+ .|--|.|-.-+.+..++. .|.++||+
T Consensus 21 ~~TPL~~~~~l~~~~g~~~v~~K~E~~~~~-tgSFK~RG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~ 99 (376)
T TIGR01747 21 RPTPLCALDHLANLLGLKKILVKDESKRFG-LNAFKMLGGSYAIAQYLAEKLHLDIETLSFEHLKNDAIGEKMGQATFAT 99 (376)
T ss_pred CCCCCcchHHHHHHhCCCcEEEeeCCCCCC-CCChHHHHHHHHHHHHHHHHhCCCcccCCHHHHhhhHHHhhcCCCEEEE
Confidence 5777777777777778 4899999998543 467788876666655533 34677877
Q ss_pred eCcccchHHHHHHHHHHHhCCeEEEEeccccCCccchhhHHHHhCC-eEEEECC
Q 020509 147 CGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPR 199 (325)
Q Consensus 147 ~GG~QSNH~~AtAaaAa~lGLkcvlvlrge~~~~~tGN~ll~~LlG-~V~~V~r 199 (325)
. ...||++|+|++|+.+|++|+++|.... .......++.+| +|+.++.
T Consensus 100 a--SsGN~g~a~A~~Aa~~G~~~~I~vP~~~---~~~k~~~i~~~GAeVi~v~~ 148 (376)
T TIGR01747 100 A--TDGNHGRGVAWAAQQLGQKAVVYMPKGS---AQERVENILNLGAECTITDM 148 (376)
T ss_pred E--CccHHHHHHHHHHHHcCCCEEEEECCCC---CHHHHHHHHhCCCEEEEECC
Confidence 5 5579999999999999999999997543 234555677899 9999975
No 67
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=99.07 E-value=2.2e-09 Score=105.60 Aligned_cols=105 Identities=20% Similarity=0.265 Sum_probs=81.7
Q ss_pred CCCCcCccCCCCccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHhh-h-CCCCeEEEeCcccchHHHHHHHHHHHhCC
Q 020509 90 NNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLE-D-HIVTDLVTCGGCQSAHATAVAVSCAERGL 167 (325)
Q Consensus 90 ~~~tp~l~~~~Ls~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~-~-~G~~~LVT~GG~QSNH~~AtAaaAa~lGL 167 (325)
-++||+...+.||+..|.+||+|||||.. .|--|+|--.+.|.... + +-...||++=++ ||+..+|.+|+++|+
T Consensus 23 ~~~TPL~~s~~Ls~~~g~~v~lK~E~lQ~--~gSFK~RGA~n~i~~Ls~e~~~~~gViaaSaG--NHaQGvA~aa~~lGi 98 (347)
T COG1171 23 VNPTPLQRSPSLSERLGAEIYLKRENLQP--VGSFKIRGAYNKLSSLSEEEERAAGVIAASAG--NHAQGVAYAAKRLGI 98 (347)
T ss_pred ccCCCcccchhhHHhhCceEEEeeccCcc--cccchhhhHHHHHHhcChhhhhcCceEEecCC--cHHHHHHHHHHHhCC
Confidence 46788888888889999999999999988 57788888777777653 2 356678886433 799999999999999
Q ss_pred eEEEEeccccCCccchhhHHHHhCC-eEEEECCCC
Q 020509 168 KSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTH 201 (325)
Q Consensus 168 kcvlvlrge~~~~~tGN~ll~~LlG-~V~~V~r~~ 201 (325)
++++||....|.. .+--.+.+| +|+.+.+..
T Consensus 99 ~a~IvMP~~tp~~---Kv~a~r~~GaeVil~g~~~ 130 (347)
T COG1171 99 KATIVMPETTPKI---KVDATRGYGAEVILHGDNF 130 (347)
T ss_pred CEEEEecCCCcHH---HHHHHHhcCCEEEEECCCH
Confidence 9999996544332 233456799 999997753
No 68
>PLN02356 phosphateglycerate kinase
Probab=99.05 E-value=3.5e-09 Score=106.39 Aligned_cols=102 Identities=16% Similarity=0.114 Sum_probs=79.0
Q ss_pred CCcCccCCCCccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHhhhCCCC---eEEEeCcccchHHHHHHHHHHHhCCe
Q 020509 92 TCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVT---DLVTCGGCQSAHATAVAVSCAERGLK 168 (325)
Q Consensus 92 ~tp~l~~~~Ls~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G~~---~LVT~GG~QSNH~~AtAaaAa~lGLk 168 (325)
.||++..++|+...|.+||+|.|+++++ |..|.|-..+.|.+|.+.|.. .+|+.... -||+.++|++|+.+|++
T Consensus 53 ~TPLv~~~~l~~~~g~~v~~KlE~~nPt--GS~KdR~A~~~i~~a~~~g~~~~~g~VveaSS-GN~g~alA~~aa~~G~~ 129 (423)
T PLN02356 53 NTPLIRINSLSEATGCEILGKCEFLNPG--GSVKDRVAVKIIEEALESGQLFPGGVVTEGSA-GSTAISLATVAPAYGCK 129 (423)
T ss_pred CCceEECcccccccCCEEEEEeccCCCC--CCHHHHHHHHHHHHHHhCCccCCCCEEEEeCC-HHHHHHHHHHHHHcCCc
Confidence 4555555555555678999999999884 899999999999999987743 35664444 38999999999999999
Q ss_pred EEEEeccccCCccchhhHHHHhCC-eEEEECC
Q 020509 169 SHLLLRGEQPQILTGYNLISTIYG-KVTYVPR 199 (325)
Q Consensus 169 cvlvlrge~~~~~tGN~ll~~LlG-~V~~V~r 199 (325)
|++|+.... .......++.+| +|+.++.
T Consensus 130 ~~ivvP~~~---s~~K~~~ir~~GAeVi~v~~ 158 (423)
T PLN02356 130 CHVVIPDDV---AIEKSQILEALGATVERVRP 158 (423)
T ss_pred EEEEECCCC---cHHHHHHHHHcCCEEEEECC
Confidence 999996433 233455778899 9999864
No 69
>PRK06450 threonine synthase; Validated
Probab=98.94 E-value=2.1e-08 Score=97.46 Aligned_cols=97 Identities=15% Similarity=0.182 Sum_probs=78.8
Q ss_pred cCCCCcCccCCCCccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHhhhCCCCeEEEeCcccchHHHHHHHHHHHhCCe
Q 020509 89 LNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLK 168 (325)
Q Consensus 89 l~~~tp~l~~~~Ls~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G~~~LVT~GG~QSNH~~AtAaaAa~lGLk 168 (325)
-.-.||++.. .+||+|.|.++++ |.-|-|-..+.+..|+++|.++|++.-+ -||+.++|++|+++|++
T Consensus 55 geG~TPLv~~--------~~l~~K~E~~nPT--GSfKDRga~~~i~~a~~~g~~~vv~aSs--GN~g~slA~~aa~~G~~ 122 (338)
T PRK06450 55 GEGRTPLIKK--------GNIWFKLDFLNPT--GSYKDRGSVTLISYLAEKGIKQISEDSS--GNAGASIAAYGAAAGIE 122 (338)
T ss_pred CCCCCCceec--------CCEEEEecCCCCc--CCCHHHHHHHHHHHHHHcCCCEEEEECC--cHHHHHHHHHHHHcCCC
Confidence 3445666653 2699999999984 7899999999999999999999887422 28999999999999999
Q ss_pred EEEEeccccCCccchhhHHHHhCC-eEEEECCC
Q 020509 169 SHLLLRGEQPQILTGYNLISTIYG-KVTYVPRT 200 (325)
Q Consensus 169 cvlvlrge~~~~~tGN~ll~~LlG-~V~~V~r~ 200 (325)
|++|+... ....+...++.+| +|+.++..
T Consensus 123 ~~i~vP~~---~~~~k~~~i~~~GA~vi~v~~~ 152 (338)
T PRK06450 123 VKIFVPET---ASGGKLKQIESYGAEVVRVRGS 152 (338)
T ss_pred EEEEEcCC---CCHHHHHHHHHcCCEEEEECCC
Confidence 99999643 3455677788999 99999753
No 70
>PRK02991 D-serine dehydratase; Provisional
Probab=98.91 E-value=3e-08 Score=99.97 Aligned_cols=105 Identities=10% Similarity=-0.004 Sum_probs=76.3
Q ss_pred CCCCcCccCCCCccCCC--------CeEEEEecCCCCCCCCChhHhhHHhhHHH-----hhhCCC---------------
Q 020509 90 NNTCPFLGDDMIMRDED--------RCFYVVRDDLLHPLVNGNKARKMDALLPL-----LEDHIV--------------- 141 (325)
Q Consensus 90 ~~~tp~l~~~~Ls~~~G--------~~l~IKRDDL~h~~lgGNK~RKLeylL~d-----A~~~G~--------------- 141 (325)
-..||++..+++++..| .+||+|.|.++.. .|--|.|---|.+.. +++.|.
T Consensus 73 ~~~TPL~~~~~l~~~~g~~~~~~~~~~V~lK~E~~np~-tGSFK~RGA~~~i~~l~~~~a~~~G~~~~~~~~~~l~~~~~ 151 (441)
T PRK02991 73 IIESPLVAIPAMQKALEKEYGQPISGRLLLKKDSHLPI-SGSIKARGGIYEVLKHAEKLALEAGLLTLDDDYSKLASPEF 151 (441)
T ss_pred ccCCCceehHHHHHHhcccccCCcCceEEEEEcCCCCC-cCChHHHHHHHHHHHhhHHHHHHhCCCCcCcchhhhcchhh
Confidence 35677777666665544 6999999999872 366888887666654 445663
Q ss_pred ------CeEEEeCcccchHHHHHHHHHHHhCCeEEEEeccccCCccchhhHHHHhCC-eEEEECCC
Q 020509 142 ------TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRT 200 (325)
Q Consensus 142 ------~~LVT~GG~QSNH~~AtAaaAa~lGLkcvlvlrge~~~~~tGN~ll~~LlG-~V~~V~r~ 200 (325)
++||+.-++ ||+.++|++|+.+|++|++||.... .......++.+| +|+.++..
T Consensus 152 ~~~~~~~~VV~aSsG--N~G~alA~aA~~~G~~~tIvvP~~a---~~~K~~~ir~~GAeVi~~~~~ 212 (441)
T PRK02991 152 RQFFSQYSIAVGSTG--NLGLSIGIMSAALGFKVTVHMSADA---RQWKKDKLRSHGVTVVEYEGD 212 (441)
T ss_pred hhhccCcEEEEECCc--HHHHHHHHHHHHcCCCEEEEECCCC---CHHHHHHHHhCCCEEEEECCC
Confidence 367773222 9999999999999999999996432 334455678899 99988753
No 71
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=98.87 E-value=2.6e-08 Score=99.73 Aligned_cols=103 Identities=17% Similarity=0.212 Sum_probs=79.9
Q ss_pred CCCCcCccCCCCccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHhh-hCCCCeEEEeCcccchHHHHHHHHHHHhCCe
Q 020509 90 NNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLE-DHIVTDLVTCGGCQSAHATAVAVSCAERGLK 168 (325)
Q Consensus 90 ~~~tp~l~~~~Ls~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~-~~G~~~LVT~GG~QSNH~~AtAaaAa~lGLk 168 (325)
-+-||+...-.||+..|.++|+|||||.+. |.-|.|-..|.+...- ++.+..+|..-++ ||+.|+|++|+++|++
T Consensus 64 ~~~TPl~~s~~lS~~~g~~vyLK~E~lQps--gSFK~RGa~~~~~kla~~~~~~gViasSaG--Nha~a~Ayaa~~Lgip 139 (457)
T KOG1250|consen 64 IVETPLLKSVALSKKAGMPVYLKREDLQPS--GSFKIRGAGNALQKLAKQQKKAGVIASSAG--NHAQAAAYAARKLGIP 139 (457)
T ss_pred eecccchhhhhhhhhcCCceEEEehhcccc--cceehhhHHHHHHHHHHhhhcCceEEecCc--cHHHHHHHHHHhcCCc
Confidence 356888888788999999999999999874 6789999999998864 4448899886554 6999999999999999
Q ss_pred EEEEeccccCCccchhhHHHHhCC-eEEEECC
Q 020509 169 SHLLLRGEQPQILTGYNLISTIYG-KVTYVPR 199 (325)
Q Consensus 169 cvlvlrge~~~~~tGN~ll~~LlG-~V~~V~r 199 (325)
++++|..-.|.. -+...+-+| +|.....
T Consensus 140 aTIVmP~~tp~~---kiq~~~nlGA~Vil~G~ 168 (457)
T KOG1250|consen 140 ATIVMPVATPLM---KIQRCRNLGATVILSGE 168 (457)
T ss_pred eEEEecCCChHH---HHHHHhccCCEEEEecc
Confidence 999996544321 122334468 7776644
No 72
>PLN02565 cysteine synthase
Probab=98.82 E-value=2.1e-07 Score=89.80 Aligned_cols=88 Identities=11% Similarity=0.086 Sum_probs=71.1
Q ss_pred CCeEEEEecCCCCCCCCChhHhhHHhhHHHhhhCCC-----CeEEEeCcccchHHHHHHHHHHHhCCeEEEEeccccCCc
Q 020509 106 DRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV-----TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQI 180 (325)
Q Consensus 106 G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G~-----~~LVT~GG~QSNH~~AtAaaAa~lGLkcvlvlrge~~~~ 180 (325)
|.+||+|.|.++++ |--|.|-..+.|..+++.|. ++||+.-+ -||+.|+|++|+.+|++|++++... .
T Consensus 29 ~~~i~~K~E~~nPt--GSfKdR~A~~~l~~~~~~g~~~~g~~~vv~aSs--GN~g~alA~~a~~~G~~~~ivvp~~---~ 101 (322)
T PLN02565 29 VARIAAKLEMMEPC--SSVKDRIGYSMITDAEEKGLIKPGESVLIEPTS--GNTGIGLAFMAAAKGYKLIITMPAS---M 101 (322)
T ss_pred CceEEEEecccCCc--cchHHHHHHHHHHHHHHcCCCCCCCcEEEEECC--ChHHHHHHHHHHHcCCeEEEEeCCC---C
Confidence 57999999999985 57899999999998877664 56887522 3799999999999999999999643 2
Q ss_pred cchhhHHHHhCC-eEEEECCC
Q 020509 181 LTGYNLISTIYG-KVTYVPRT 200 (325)
Q Consensus 181 ~tGN~ll~~LlG-~V~~V~r~ 200 (325)
..-...+++.+| +|+.++..
T Consensus 102 ~~~k~~~i~~~GA~V~~~~~~ 122 (322)
T PLN02565 102 SLERRIILLAFGAELVLTDPA 122 (322)
T ss_pred cHHHHHHHHHcCCEEEEeCCC
Confidence 334566788999 99998764
No 73
>PRK08813 threonine dehydratase; Provisional
Probab=98.79 E-value=2.4e-07 Score=91.06 Aligned_cols=96 Identities=14% Similarity=0.073 Sum_probs=73.7
Q ss_pred CCCcCccCCCCccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHhhhCCCC-eEEEeCcccchHHHHHHHHHHHhCCeE
Q 020509 91 NTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVT-DLVTCGGCQSAHATAVAVSCAERGLKS 169 (325)
Q Consensus 91 ~~tp~l~~~~Ls~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G~~-~LVT~GG~QSNH~~AtAaaAa~lGLkc 169 (325)
.+||++..+.+ .||+|.|.++++ |--|.|-..+.|..+.+.+.. .||+.-+ -||+.|+|++|+++|++|
T Consensus 38 ~~TPL~~~~~l------~v~lK~E~~npt--GSfK~RgA~~~l~~a~~~~~~~~VV~aSs--GN~G~alA~aa~~~Gi~~ 107 (349)
T PRK08813 38 SPTPLHYAERF------GVWLKLENLQRT--GSYKVRGALNALLAGLERGDERPVICASA--GNHAQGVAWSAYRLGVQA 107 (349)
T ss_pred CCCCeEECCCC------cEEEEecCCCCc--CCCHHHHHHHHHHHHHHcCCCCeEEEECC--CHHHHHHHHHHHHcCCCE
Confidence 34555554433 499999999874 779999999999999888865 5666533 379999999999999999
Q ss_pred EEEeccccCCccchhhHHHHhCC-eEEEECC
Q 020509 170 HLLLRGEQPQILTGYNLISTIYG-KVTYVPR 199 (325)
Q Consensus 170 vlvlrge~~~~~tGN~ll~~LlG-~V~~V~r 199 (325)
++||.... .....-.++.+| +|+.++.
T Consensus 108 ~IvvP~~~---~~~K~~~i~~~GAeVv~~g~ 135 (349)
T PRK08813 108 ITVMPHGA---PQTKIAGVAHWGATVRQHGN 135 (349)
T ss_pred EEEEcCCC---CHHHHHHHHHcCCEEEEECC
Confidence 99995432 334455667899 9999865
No 74
>PLN03013 cysteine synthase
Probab=98.79 E-value=2.7e-07 Score=93.10 Aligned_cols=103 Identities=13% Similarity=0.080 Sum_probs=83.0
Q ss_pred CCCcCccCCCCccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHhhhCCC-----CeEEEeCcccchHHHHHHHHHHHh
Q 020509 91 NTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV-----TDLVTCGGCQSAHATAVAVSCAER 165 (325)
Q Consensus 91 ~~tp~l~~~~Ls~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G~-----~~LVT~GG~QSNH~~AtAaaAa~l 165 (325)
-.||++..+++++..|.+||+|-|.++++ |-=|.|-..+.|.+|++.|. ++||+.=+ -||+.|+|++|+.+
T Consensus 122 G~TPLv~l~~l~~~~g~~Iy~KlE~lNPt--GSfKdR~A~~~l~~a~~~G~l~pG~~~VVeaSS--GN~G~ALA~~a~~~ 197 (429)
T PLN03013 122 GKTPMVYLNSIAKGCVANIAAKLEIMEPC--CSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTS--GNTGIGLAFIAASR 197 (429)
T ss_pred CCCCeEECcccccccCCeEEEEeccCCCc--cccHHHHHHHHHHHHHHcCCcCCCCcEEEEECC--cHHHHHHHHHHHHc
Confidence 34777777777666678999999999874 78899999999999988775 56877522 37999999999999
Q ss_pred CCeEEEEeccccCCccchhhHHHHhCC-eEEEECCC
Q 020509 166 GLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRT 200 (325)
Q Consensus 166 GLkcvlvlrge~~~~~tGN~ll~~LlG-~V~~V~r~ 200 (325)
|++|++++... .......+++.+| +|+.++..
T Consensus 198 G~~~~VvvP~~---~s~~K~~~ira~GAeVi~v~~~ 230 (429)
T PLN03013 198 GYRLILTMPAS---MSMERRVLLKAFGAELVLTDPA 230 (429)
T ss_pred CCCEEEEECCC---CcHHHHHHHHHcCCEEEEECCC
Confidence 99999999643 2345666788999 99999764
No 75
>PLN02569 threonine synthase
Probab=98.76 E-value=5.1e-07 Score=92.15 Aligned_cols=109 Identities=14% Similarity=0.192 Sum_probs=84.3
Q ss_pred ccccCCCCcCccCCCCccC-CCC-eEEEEecCCCCCCCCChhHhhHHhhHHHhhhCCC-----CeEEEeCcccchHHHHH
Q 020509 86 ISFLNNTCPFLGDDMIMRD-EDR-CFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV-----TDLVTCGGCQSAHATAV 158 (325)
Q Consensus 86 i~~l~~~tp~l~~~~Ls~~-~G~-~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G~-----~~LVT~GG~QSNH~~At 158 (325)
+++-.-.||++..++|++. .|+ +||+|.|.++++ |--|-|-.-..+..|++.|. ++||+.= --||+.|+
T Consensus 127 vsl~eG~TPLv~~~~l~~~~~G~~~l~~K~E~~nPT--GSFKDRga~~~vs~a~~~g~~~~~~~~Vv~AS--SGN~GaAl 202 (484)
T PLN02569 127 VSLFEGNSNLFWAERLGKEFLGMNDLWVKHCGISHT--GSFKDLGMTVLVSQVNRLRKMAKPVVGVGCAS--TGDTSAAL 202 (484)
T ss_pred eecCCCCCceeEhhhhhHhhcCCccEEEEECCCCCC--cCHHHHHHHHHHHHHHHhhhccCCccEEEEeC--CcHHHHHH
Confidence 5555677888888877776 674 899999999874 77899988898888887665 4565431 23799999
Q ss_pred HHHHHHhCCeEEEEeccccCCccchhhHHHHhCC-eEEEECCC
Q 020509 159 AVSCAERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRT 200 (325)
Q Consensus 159 AaaAa~lGLkcvlvlrge~~~~~tGN~ll~~LlG-~V~~V~r~ 200 (325)
|+.|+.+|++|++|+.... ........++.+| +|+.|+..
T Consensus 203 Aayaa~~Gl~~~I~vP~~~--~~~~k~~qi~a~GA~Vi~v~g~ 243 (484)
T PLN02569 203 SAYCAAAGIPSIVFLPADK--ISIAQLVQPIANGALVLSIDTD 243 (484)
T ss_pred HHHHHhcCCeEEEEEcCCC--CCHHHHHHHHhcCCEEEEECCC
Confidence 9999999999999995431 2235666788899 99999863
No 76
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=98.75 E-value=2.1e-07 Score=93.13 Aligned_cols=102 Identities=13% Similarity=0.024 Sum_probs=74.0
Q ss_pred CCcCccCCCCccCC--------CCeEEEEecCCCCCCCCChhHhhHHhhHHH-----hhhCCC-----------------
Q 020509 92 TCPFLGDDMIMRDE--------DRCFYVVRDDLLHPLVNGNKARKMDALLPL-----LEDHIV----------------- 141 (325)
Q Consensus 92 ~tp~l~~~~Ls~~~--------G~~l~IKRDDL~h~~lgGNK~RKLeylL~d-----A~~~G~----------------- 141 (325)
.||++..++|++.. +.+||+|-|.+++. .|--|.|---|.|.. |++.|.
T Consensus 52 ~TPLv~~~~ls~~~g~~~~~~~~~~v~~K~E~~nP~-tGSfKdRgA~~~i~~l~~~~a~~~G~l~pg~~~~~~~~~~~~~ 130 (404)
T cd06447 52 ESPLLPIPRMKQALEKLYHQPIKGRLLLKADSHLPI-SGSIKARGGIYEVLKHAEKLALEHGLLTLEDDYSKLASEKFRK 130 (404)
T ss_pred CCCceehHHHHHHhccccccCcCceEEEEecCCCCC-CCChHHHHHHHHHHHHhHHHHHHhCCCCcccchhhhhhhhhhh
Confidence 44555444444433 36999999999873 367899988777753 555554
Q ss_pred ----CeEEEeCcccchHHHHHHHHHHHhCCeEEEEeccccCCccchhhHHHHhCC-eEEEECC
Q 020509 142 ----TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPR 199 (325)
Q Consensus 142 ----~~LVT~GG~QSNH~~AtAaaAa~lGLkcvlvlrge~~~~~tGN~ll~~LlG-~V~~V~r 199 (325)
++||+.= --||+.++|++|+.+|++|+++|... ........++.+| +|+.++.
T Consensus 131 ~~~~~~VV~aS--sGN~G~alA~~a~~~G~~~~IvvP~~---~~~~K~~~ira~GAeVv~v~~ 188 (404)
T cd06447 131 LFSQYSIAVGS--TGNLGLSIGIMAAALGFKVTVHMSAD---AKQWKKDKLRSKGVTVVEYET 188 (404)
T ss_pred cccCCEEEEEC--ccHHHHHHHHHHHHcCCCEEEEECCC---CcHHHHHHHHHCCCEEEEECC
Confidence 4677742 24899999999999999999999643 2344566788999 9999975
No 77
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=98.75 E-value=7.9e-08 Score=95.60 Aligned_cols=100 Identities=13% Similarity=0.055 Sum_probs=77.5
Q ss_pred CCcCccCCCCccCCCC-eEEE-------EecCCCCCCCCChhHhhHHhhHHHhhhCCCCeEEEeCcccchHHHHHHHHHH
Q 020509 92 TCPFLGDDMIMRDEDR-CFYV-------VRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCA 163 (325)
Q Consensus 92 ~tp~l~~~~Ls~~~G~-~l~I-------KRDDL~h~~lgGNK~RKLeylL~dA~~~G~~~LVT~GG~QSNH~~AtAaaAa 163 (325)
.||++..++|++..|+ ++|+ |+|+++++ |--|.|-..+.|..|.+.|.+.||+.-. -||+.|+|++|+
T Consensus 62 ~tpl~~~~~L~~~lG~~~v~~K~e~~~~K~E~~npT--GSFKdRga~~~i~~a~~~g~~~Vv~aSs--GN~g~alA~~aa 137 (398)
T TIGR03844 62 GPVTYKSEGLARELGLSDLYITFSGYWPERGAFMRT--CSFKELEALPTMQRLKERGGKTLVVASA--GNTGRAFAEVSA 137 (398)
T ss_pred CCceeehHHHHHHhCCCeEEEEecCcccchhccCCc--cccHHHHHHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHHH
Confidence 4677777788877888 9999 88888874 6799999999999999999888887532 489999999999
Q ss_pred HhCCeEEEEeccccCCccchhhHH-HHhCC-eEEEECC
Q 020509 164 ERGLKSHLLLRGEQPQILTGYNLI-STIYG-KVTYVPR 199 (325)
Q Consensus 164 ~lGLkcvlvlrge~~~~~tGN~ll-~~LlG-~V~~V~r 199 (325)
++|++|++|+.... ...... ...+| +|+.++.
T Consensus 138 ~~Gi~~~I~vP~~~----~~~~~~~~~~~ga~vv~v~g 171 (398)
T TIGR03844 138 ITGQPVILVVPKSS----ADRLWTTEPASSVLLVTVDG 171 (398)
T ss_pred HcCCcEEEEECCCh----HHHHHHHhhCCcEEEEECCC
Confidence 99999999995431 111112 24567 8887764
No 78
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=98.57 E-value=1.5e-06 Score=87.71 Aligned_cols=103 Identities=10% Similarity=0.001 Sum_probs=74.5
Q ss_pred CCcCccCCCCccC--------CCCeEEEEecCCCCCCCCChhHhhHHhhHHH-----hhhCCC-----------------
Q 020509 92 TCPFLGDDMIMRD--------EDRCFYVVRDDLLHPLVNGNKARKMDALLPL-----LEDHIV----------------- 141 (325)
Q Consensus 92 ~tp~l~~~~Ls~~--------~G~~l~IKRDDL~h~~lgGNK~RKLeylL~d-----A~~~G~----------------- 141 (325)
.||++..+++++. .+.+||+|-|.++. ..|.-|.|---|.|.. |++.|.
T Consensus 70 ~TPL~~~~~ls~~~~~~~~~~~~~~v~lKlE~~nP-~tGSfKdRGA~~~i~~~~~~~A~~~G~l~~~~~~~~l~e~~~~~ 148 (431)
T TIGR02035 70 ESPLVEIFNMQKELEKKYQQEIPGRLLLKMDSHLP-ISGSIKARGGIYEVLKHAEELALEAGLLKLDDDYSILAEKKFKD 148 (431)
T ss_pred CCCccchHHHHHHhhhcccCCcCceEEEEecccCC-ccCCcHHHHHHHHHHHhhHHHHHHcCCCCcCcchhhhcchhhhh
Confidence 4555555555542 25699999999887 3477899988887753 566665
Q ss_pred ----CeEEEeCcccchHHHHHHHHHHHhCCeEEEEeccccCCccchhhHHHHhCC-eEEEECCC
Q 020509 142 ----TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRT 200 (325)
Q Consensus 142 ----~~LVT~GG~QSNH~~AtAaaAa~lGLkcvlvlrge~~~~~tGN~ll~~LlG-~V~~V~r~ 200 (325)
.+||+. .. -||+.++|.+|+.+|++|+++|.... .......++.+| +|+.++..
T Consensus 149 ~~~~~~Vv~a-Ss-GN~G~slA~~Aa~lG~~~~IvmP~~a---~~~K~~~ir~~GAeVv~~~~~ 207 (431)
T TIGR02035 149 FFSRYSIAVG-ST-GNLGLSIGIISAALGFQVTVHMSADA---KQWKKDKLRSKGVTVVEYESD 207 (431)
T ss_pred cccCceEEEE-Cc-cHHHHHHHHHHHHcCCCEEEEECCCC---CHHHHHHHHHcCCEEEEECCC
Confidence 245543 22 48999999999999999999996532 333455778899 99999763
No 79
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=98.18 E-value=1.7e-05 Score=76.25 Aligned_cols=116 Identities=16% Similarity=0.244 Sum_probs=87.3
Q ss_pred CCCcCccCCCCccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHhh-hCCCCeEEEeCcccchHHHHHHHHHHHhCCeE
Q 020509 91 NTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLE-DHIVTDLVTCGGCQSAHATAVAVSCAERGLKS 169 (325)
Q Consensus 91 ~~tp~l~~~~Ls~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~-~~G~~~LVT~GG~QSNH~~AtAaaAa~lGLkc 169 (325)
+.||++-..+|-+..|.++|.|=|.+--+ |--|+|---+.+-.+. ++.++.+||+-.+ ||+.|+|.+|+.+|++|
T Consensus 24 hkTpVlTS~~ln~~~g~~vfFKcE~fQKt--GaFKfRGAlNav~~l~~ek~~kgvithSSG--NHaqAlalaAk~~giPa 99 (323)
T KOG1251|consen 24 HKTPVLTSENLNEKVGRHVFFKCENFQKT--GAFKFRGALNAVSSLKAEKRAKGVITHSSG--NHAQALALAAKILGIPA 99 (323)
T ss_pred ccCceechhhHHHHhhhheEeehhhhhhc--cceehhhhHHHHHHhhHhhhcCceEeecCC--cHHHHHHHHHHhcCCCe
Confidence 56888887777777899999999988764 5566666555555554 6778999998554 69999999999999999
Q ss_pred EEEeccccCCccchhhHHHHhCC-eEEEECCCCccchHHHHHHHHH
Q 020509 170 HLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYAN 214 (325)
Q Consensus 170 vlvlrge~~~~~tGN~ll~~LlG-~V~~V~r~~y~~kda~~e~~~~ 214 (325)
.+++....|.- -+.-++-+| +|+++++.. +.|+.+...+.+
T Consensus 100 ~IVvP~~AP~~---Kv~a~~~Yga~ii~~e~~~-~sRE~va~~lte 141 (323)
T KOG1251|consen 100 TIVVPKDAPIC---KVAATRGYGANIIFCEPTV-ESRESVAKDLTE 141 (323)
T ss_pred EEEecCCChHH---HHHHHHhcCceEEEecCcc-chHHHHHHHHHH
Confidence 99997655432 344466789 999998864 356766555544
No 80
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=97.82 E-value=0.001 Score=64.90 Aligned_cols=154 Identities=14% Similarity=0.105 Sum_probs=97.9
Q ss_pred ccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHhhhCC----CCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecccc
Q 020509 102 MRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHI----VTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (325)
Q Consensus 102 s~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G----~~~LVT~GG~QSNH~~AtAaaAa~lGLkcvlvlrge~ 177 (325)
+...+++||+|=|-.++. |-=|=|--.|+|.+|.+.| -++||=. .-.|-+.++|.+|+.+|.+++++|...-
T Consensus 21 ~~~~~~~i~~KlE~~NP~--gSvKDR~A~~mI~~Ae~~G~l~pG~tIVE~--TSGNTGI~LA~vaa~~Gy~~iivmP~~~ 96 (300)
T COG0031 21 SPGTGVEIYAKLESFNPG--GSVKDRIALYMIEDAEKRGLLKPGGTIVEA--TSGNTGIALAMVAAAKGYRLIIVMPETM 96 (300)
T ss_pred CCCCCceEEEEhhhcCCC--CchhHHHHHHHHHHHHHcCCCCCCCEEEEc--CCChHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 333467999999998874 4789999999999999887 3566642 2247899999999999999999995422
Q ss_pred CCccchhhHHHHhCC-eEEEECCCCccchHHHHHHHHHHhcccccchhhHH------------HHHHHHHHHhhhhhccc
Q 020509 178 PQILTGYNLISTIYG-KVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCN------------EIFEASLTAQKSRASCL 244 (325)
Q Consensus 178 ~~~~tGN~ll~~LlG-~V~~V~r~~y~~kda~~e~~~~~~~GasG~vr~~~------------eI~~qe~~~q~~~~~~~ 244 (325)
..-...+++.+| +|+.++...--.+.++.+ ..++.....+..-|.+ +.-+.|+.+
T Consensus 97 ---S~er~~~l~a~GAevi~t~~~~g~~~~a~~~-a~el~~~~p~~~~~~~Qf~NpaN~~aH~~tT~~EI~~-------- 164 (300)
T COG0031 97 ---SQERRKLLRALGAEVILTPGAPGNMKGAIER-AKELAAEIPGYAVWLNQFENPANPEAHYETTGPEIWQ-------- 164 (300)
T ss_pred ---CHHHHHHHHHcCCEEEEcCCCCCchHHHHHH-HHHHHHhCCCceEchhhcCCCccHHHHHhhhHHHHHH--------
Confidence 122345678999 999999832212333222 1122222222222221 233333332
Q ss_pred cccchhhhhhccCCcEEEEeCCCcchhhhhhhcc
Q 020509 245 GQMDAHKGIDNCRKKVLIVNEGAGDAVALLVLIP 278 (325)
Q Consensus 245 ~~~d~~~~l~~~g~~~y~ip~GGSnaiG~lGyi~ 278 (325)
+++...+..++-.|=|++..|+--|++
T Consensus 165 -------~~~g~~d~fVagvGTGGTitGvar~Lk 191 (300)
T COG0031 165 -------QTDGKVDAFVAGVGTGGTITGVARYLK 191 (300)
T ss_pred -------HhCCCCCEEEEeCCcchhHHHHHHHHH
Confidence 233446666777777777777777764
No 81
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=96.49 E-value=0.055 Score=55.03 Aligned_cols=109 Identities=17% Similarity=0.160 Sum_probs=77.8
Q ss_pred cccCCCCcCccCCCCccCCCC---eEEEEecCCCCCCCCChhHhhHHhhHHHhhhCCCCeEEEeCcccchHHHHHHHHHH
Q 020509 87 SFLNNTCPFLGDDMIMRDEDR---CFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCA 163 (325)
Q Consensus 87 ~~l~~~tp~l~~~~Ls~~~G~---~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G~~~LVT~GG~QSNH~~AtAaaAa 163 (325)
.+-+-.||++.++++...+|+ ++|+|=|=++++ +--|=|-+..++..|...|.++|++ +.--|-+.++|+.++
T Consensus 71 ~l~eg~tp~~~~~~~~~~l~~~~~~lyvk~~~~nPT--~SFKDrg~~~~~~~~~~~g~~~I~~--ASSGnTgAs~aaya~ 146 (411)
T COG0498 71 SLGEGGTPLYKAPALAAPLGVLNDNLYVKELGHNPT--GSFKDRGMTVLVSLAKELGAKTILC--ASSGNTGASAAAYAA 146 (411)
T ss_pred hhhhccCccccCcccchhhccCCcceehhhhccCCC--cchhhhhHHHHHHHHHHhcCCEEEE--eCCchHHHHHHHHhc
Confidence 444445666665666665554 599997776643 6789999999999999888655444 112356699999999
Q ss_pred HhCCeEEEEeccccCCccchhhHHHHhCC-eEEEECCCC
Q 020509 164 ERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTH 201 (325)
Q Consensus 164 ~lGLkcvlvlrge~~~~~tGN~ll~~LlG-~V~~V~r~~ 201 (325)
+.|++|++++.... ...+-...|..+| +++.|....
T Consensus 147 rag~~v~Vl~P~g~--vs~~k~~q~~~~ga~~i~v~G~f 183 (411)
T COG0498 147 RAGLKVFVLYPKGK--VSPGKLAQMLTLGAHVIAVDGNF 183 (411)
T ss_pred cCCCeEEEEecCCC--CCHHHHHHHHhcCCEEEEEcCcH
Confidence 99999999985432 2345566788899 999997654
No 82
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=96.17 E-value=0.02 Score=56.43 Aligned_cols=135 Identities=17% Similarity=0.170 Sum_probs=93.7
Q ss_pred CCcCccCCCCccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHhhhCCC---CeEEEeCcccchHHHHHHHHHHHhCCe
Q 020509 92 TCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV---TDLVTCGGCQSAHATAVAVSCAERGLK 168 (325)
Q Consensus 92 ~tp~l~~~~Ls~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G~---~~LVT~GG~QSNH~~AtAaaAa~lGLk 168 (325)
-||+..-+.||+..|++|+.|-|=|++. |.=|=|-.-|.+.+|.+.|. -..|+-|-+. |-+..+|.+|..+|-+
T Consensus 49 nTpliri~sLs~aTGcnIlaK~Ef~NPg--gS~KDRvAl~iir~Aee~GkL~~gg~v~EGtaG-sTgIslA~v~~a~Gyk 125 (391)
T KOG1481|consen 49 NTPLIRINSLSNATGCNILAKAEFLNPG--GSVKDRVALYIIRTAEEKGKLVRGGTVVEGTAG-STGISLAHVARALGYK 125 (391)
T ss_pred CCceEEeeccccccccchhhhhhccCCC--CChhhhhHHHHHHHHHHcCCcccCceEEecCCC-ccchhHHHhhhhcCcc
Confidence 4677777788888899999999988763 67799999999999988885 2456666664 4678899999999999
Q ss_pred EEEEeccccCCccchhhHHHHhCC-eEEEECCCCccchHHH----HHHHHHHhcccccchhhHHHHHHH
Q 020509 169 SHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTHYAHRIEM----LKSYANLVAGNNGDVVWCNEIFEA 232 (325)
Q Consensus 169 cvlvlrge~~~~~tGN~ll~~LlG-~V~~V~r~~y~~kda~----~e~~~~~~~GasG~vr~~~eI~~q 232 (325)
|+++|..+...+ -.-+-..+| +|+.|+.....+.+.. .++..+.+....|...||-+-.+.
T Consensus 126 ~~I~mPddqs~e---K~~ile~LGA~V~rV~pa~i~dp~~yvn~Arr~an~~~~~~ngi~g~fAdQFeN 191 (391)
T KOG1481|consen 126 CHIYMPDDQSQE---KSDILEFLGAEVHRVPPAPIVDPNHYVNQARRAANETPNASNGIRGWFADQFEN 191 (391)
T ss_pred eEEECCChHHHH---HHHHHHHhcceeeecCCcCccChhHHHHHHHHHhhhcccccCCcccchhhhhcC
Confidence 999996543221 223446789 9999987665443332 222222233334666777443333
No 83
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=93.43 E-value=0.38 Score=48.34 Aligned_cols=105 Identities=13% Similarity=0.060 Sum_probs=75.7
Q ss_pred CCCCccccccCCCCcCccCCCCccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHhhhCC-----CCeEEEeCcccchH
Q 020509 80 GGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHI-----VTDLVTCGGCQSAH 154 (325)
Q Consensus 80 ~g~~~pi~~l~~~tp~l~~~~Ls~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G-----~~~LVT~GG~QSNH 154 (325)
.| -||+-++++++-. ..++|++|=|=++.. +-=|=|--...+.+|...| +++||= ..--|-
T Consensus 50 iG-~TPlv~ln~i~~g---------~~~~i~~K~E~~~p~--~SvKdRia~sMi~~Ae~~G~i~pg~stliE--pTSGNt 115 (362)
T KOG1252|consen 50 IG-NTPLVKLNKIAGG---------CVARIAAKLEYMNPG--GSVKDRIAWSMIEDAEKKGLITPGKSTLIE--PTSGNT 115 (362)
T ss_pred hC-CCceEEeccccCC---------ccceEEEEeeecCCc--ccHHHHHHHHHHHHHHHcCCccCCceEEEe--cCCCch
Confidence 44 5788888776322 256999999988763 5678898899999997776 355553 223478
Q ss_pred HHHHHHHHHHhCCeEEEEeccccCCccchhhHHHHhCC-eEEEECCCC
Q 020509 155 ATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTH 201 (325)
Q Consensus 155 ~~AtAaaAa~lGLkcvlvlrge~~~~~tGN~ll~~LlG-~V~~V~r~~ 201 (325)
+.++|.+|+..|.+|+++|...-..+ -..+.+.|| +|+.++...
T Consensus 116 GigLA~~~a~~Gyk~i~tmP~~ms~E---k~~~l~a~Gaeii~tp~a~ 160 (362)
T KOG1252|consen 116 GIGLAYMAALRGYKCIITMPEKMSKE---KRILLRALGAEIILTPPAA 160 (362)
T ss_pred HHHHHHHHHHcCceEEEEechhhhHH---HHHHHHHcCCEEEecChHH
Confidence 99999999999999999996432211 123456789 999987643
No 84
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=91.56 E-value=1.3 Score=41.78 Aligned_cols=106 Identities=23% Similarity=0.277 Sum_probs=60.7
Q ss_pred hHHhhHHHhhhCCCC----eEEEeCcccc--hHHHHHHHHHHHhCCe---EEEEeccccCCccchhhHHH-------Hh-
Q 020509 128 KMDALLPLLEDHIVT----DLVTCGGCQS--AHATAVAVSCAERGLK---SHLLLRGEQPQILTGYNLIS-------TI- 190 (325)
Q Consensus 128 KLeylL~dA~~~G~~----~LVT~GG~QS--NH~~AtAaaAa~lGLk---cvlvlrge~~~~~tGN~ll~-------~L- 190 (325)
.|..++..+++.|.+ .|+|-||++| ||+.|++.+|++.|++ .|+++-|.+....++--.+. .+
T Consensus 15 ~l~~~~~~~k~~~~~lHl~GLlSdGGVHSh~~Hl~al~~~a~~~gv~~V~vH~f~DGRDt~P~S~~~yl~~l~~~l~~~~ 94 (223)
T PF06415_consen 15 VLLEAIEHAKKNGGRLHLMGLLSDGGVHSHIDHLFALIKLAKKQGVKKVYVHAFTDGRDTPPKSALKYLEELEEKLAEIG 94 (223)
T ss_dssp HHHHHHHHHCCTT--EEEEEEESS-SSS--HHHHHHHHHHHHHTT-SEEEEEEEE-SSSS-TTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCeEEEEEEecCCCccccHHHHHHHHHHHHHcCCCEEEEEEecCCCCCCcchHHHHHHHHHHHHHhhC
Confidence 456667776655543 4678999988 6999999999999988 56778777655445433322 22
Q ss_pred CCeEEEECCCCcc-----chHHHHHHHHHHhccccc-chhhHHHHHHHH
Q 020509 191 YGKVTYVPRTHYA-----HRIEMLKSYANLVAGNNG-DVVWCNEIFEAS 233 (325)
Q Consensus 191 lG~V~~V~r~~y~-----~kda~~e~~~~~~~GasG-~vr~~~eI~~qe 233 (325)
.|+|-.|..--|. ..|..+.+|..++.|..- ....+.+.|++.
T Consensus 95 ~g~IAsv~GRyyaMDRD~rWeRv~~Ay~alv~g~g~~~~~~~~~ai~~~ 143 (223)
T PF06415_consen 95 IGRIASVSGRYYAMDRDKRWERVEKAYDALVNGEGPNKFDDALEAIEAS 143 (223)
T ss_dssp CTEEEEEEECCCCT--TS-HHHHHHHHHHHCT--SE-EESSHHHHHHHH
T ss_pred CceEEEEeceeeeeccccCHHHHHHHHHHHhcCccccccCCHHHHHHHH
Confidence 2377666433332 345567788777766553 444455555443
No 85
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=87.23 E-value=6.1 Score=41.52 Aligned_cols=92 Identities=21% Similarity=0.313 Sum_probs=58.7
Q ss_pred HHhhHHHhhhCCCC----eEEEeCcccc--hHHHHHHHHHHHhCCe---EEEEeccccCCccchhhHHH------HhCC-
Q 020509 129 MDALLPLLEDHIVT----DLVTCGGCQS--AHATAVAVSCAERGLK---SHLLLRGEQPQILTGYNLIS------TIYG- 192 (325)
Q Consensus 129 LeylL~dA~~~G~~----~LVT~GG~QS--NH~~AtAaaAa~lGLk---cvlvlrge~~~~~tGN~ll~------~LlG- 192 (325)
|..++..+++.|.+ .|+|-||++| +|+.|+..+|++.|++ .|+++-|.+....++.-++. .-+|
T Consensus 94 l~~~~~~~~~~~~~lHl~GL~SdGgVHsh~~hl~~l~~~a~~~g~~~v~vH~~~DGRD~~p~s~~~~~~~l~~~~~~~~~ 173 (501)
T TIGR01307 94 LLGAIDRAKDNNGKLHLMGLVSDGGVHSHIDHLIALIELAAERGIEKVVLHAFTDGRDTAPKSAESYLEQLQAFLKEIGN 173 (501)
T ss_pred HHHHHHHHHhcCCceEEEEeccCCCCcchHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCchhHHHHHHHHHHHHHHhCC
Confidence 45566666665544 4678999999 7999999999999995 56677776655444432221 1124
Q ss_pred -eEEEECCCCcc-----chHHHHHHHHHHhcccc
Q 020509 193 -KVTYVPRTHYA-----HRIEMLKSYANLVAGNN 220 (325)
Q Consensus 193 -~V~~V~r~~y~-----~kda~~e~~~~~~~Gas 220 (325)
+|-.|..--|. ..+.++.+|..++.|..
T Consensus 174 ~~iasv~GRyyaMDRd~rw~rv~~ay~~~~~g~~ 207 (501)
T TIGR01307 174 GRIATISGRYYAMDRDQRWDRVEIAYKAITGGDG 207 (501)
T ss_pred EEEEEEeCcceeecCccchHHHHHHHHHHhcCCC
Confidence 66555432332 34556777876666554
No 86
>PRK05434 phosphoglyceromutase; Provisional
Probab=84.73 E-value=10 Score=39.90 Aligned_cols=93 Identities=23% Similarity=0.310 Sum_probs=58.5
Q ss_pred hHHhhHHHhhhCCCC----eEEEeCcccc--hHHHHHHHHHHHhCC-e--EEEEeccccCCccchhhHHHH------hCC
Q 020509 128 KMDALLPLLEDHIVT----DLVTCGGCQS--AHATAVAVSCAERGL-K--SHLLLRGEQPQILTGYNLIST------IYG 192 (325)
Q Consensus 128 KLeylL~dA~~~G~~----~LVT~GG~QS--NH~~AtAaaAa~lGL-k--cvlvlrge~~~~~tGN~ll~~------LlG 192 (325)
.|..++..+++.+.+ .|+|-||++| +|+.|+..+|++.|+ + .|+++-|.+....++.-++.+ -+|
T Consensus 97 ~~~~~~~~~~~~~~~lHl~GL~SdggVHsh~~hl~~l~~~a~~~g~~~v~vH~~~DGRD~~p~s~~~~i~~l~~~~~~~~ 176 (507)
T PRK05434 97 ALLDAIDKAKKNGGALHLMGLLSDGGVHSHIDHLFALLELAKEEGVKKVYVHAFLDGRDTPPKSALGYLEELEAKLAELG 176 (507)
T ss_pred HHHHHHHHHHhcCCeEEEEEeccCCCcccHHHHHHHHHHHHHHcCCCEEEEEEecCCCCCCchhHHHHHHHHHHHHHHhC
Confidence 344566666655543 4678999999 899999999999999 3 455666666544444322211 124
Q ss_pred --eEEEECCCCcc-----chHHHHHHHHHHhcccc
Q 020509 193 --KVTYVPRTHYA-----HRIEMLKSYANLVAGNN 220 (325)
Q Consensus 193 --~V~~V~r~~y~-----~kda~~e~~~~~~~Gas 220 (325)
+|-.|..--|. ..+.++.+|..++.|..
T Consensus 177 ~~~iasv~GRyyamDRd~rw~rv~~a~~~~~~g~~ 211 (507)
T PRK05434 177 VGRIASVSGRYYAMDRDKRWDRVEKAYDALVLGEG 211 (507)
T ss_pred CeeEEEEeccccccccccchHHHHHHHHHHhcCCC
Confidence 66555433332 35566777877776654
No 87
>PRK09225 threonine synthase; Validated
Probab=80.12 E-value=25 Score=36.43 Aligned_cols=86 Identities=14% Similarity=0.137 Sum_probs=56.4
Q ss_pred eEEEEecCCCCCCCCChhHhhHHh---hHHHhhhCCCCeEEEeCcccchHHHHH-HHHHHHhCCeEEEEeccccCCccch
Q 020509 108 CFYVVRDDLLHPLVNGNKARKMDA---LLPLLEDHIVTDLVTCGGCQSAHATAV-AVSCAERGLKSHLLLRGEQPQILTG 183 (325)
Q Consensus 108 ~l~IKRDDL~h~~lgGNK~RKLey---lL~dA~~~G~~~LVT~GG~QSNH~~At-AaaAa~lGLkcvlvlrge~~~~~tG 183 (325)
++|+. .|-|.-.+--|=|-+.. ++..+++.+..+|++. .--|-+.|+ |+.+++-|++|++++.... ....
T Consensus 97 ~~~~l--ELfhGPT~sFKD~a~~~l~~~l~~a~~~~~~~Il~A--TSGdtG~Aa~aaf~~~~gi~~~V~~P~g~--vs~~ 170 (462)
T PRK09225 97 NLYVL--ELFHGPTLAFKDFALQFLAQLLEYVLKGEKITILGA--TSGDTGSAAAEAFRGKPNVRVVILYPKGK--VSPV 170 (462)
T ss_pred CceeH--hhccCCccchhhhHHHHHHHHHHHHHhCCCcEEEEc--CCCcHHHHHHHHHhCcCCCEEEEEEcCCC--CCHH
Confidence 47775 56665567788888887 7888877335555552 223567777 7888999999999986432 2234
Q ss_pred hhHHHHhC-C-eE--EEECC
Q 020509 184 YNLISTIY-G-KV--TYVPR 199 (325)
Q Consensus 184 N~ll~~Ll-G-~V--~~V~r 199 (325)
....|..+ | +| +-|+.
T Consensus 171 q~~Qm~t~~g~nv~vi~V~G 190 (462)
T PRK09225 171 QEKQMTTLQGDNIHVVAVEG 190 (462)
T ss_pred HHHHHHhhcCCCeEEEEeCC
Confidence 45566667 7 66 44543
No 88
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=65.77 E-value=1e+02 Score=32.01 Aligned_cols=86 Identities=15% Similarity=0.118 Sum_probs=53.6
Q ss_pred eEEEEecCCCCCCCCChhHhhHHhh---HHHhhhC--CCCeEEEeCcccchHHHH-HHHHHHHhCCeEEEEeccccCCcc
Q 020509 108 CFYVVRDDLLHPLVNGNKARKMDAL---LPLLEDH--IVTDLVTCGGCQSAHATA-VAVSCAERGLKSHLLLRGEQPQIL 181 (325)
Q Consensus 108 ~l~IKRDDL~h~~lgGNK~RKLeyl---L~dA~~~--G~~~LVT~GG~QSNH~~A-tAaaAa~lGLkcvlvlrge~~~~~ 181 (325)
++|++ .|-|.-.+--|=|-+..+ +..++++ +..+|++. .--|-+.| +++.+++.|++|+++..... ..
T Consensus 96 ~~~~l--ELfhGPT~sFKD~a~~~l~~l~~~~~~~~~~~~~Il~A--TSGdTG~Aa~aaf~~~~gi~v~Vl~P~g~--vs 169 (460)
T cd01560 96 NLYVL--ELFHGPTLAFKDMALQFLGRLLEYFLKRRNERITILVA--TSGDTGSAAIEGFRGKPNVDVVVLYPKGG--VS 169 (460)
T ss_pred CcEEe--eeeeCCCcchHHhHHHHHHHHHHHHHHhcCCCeEEEEc--CCCcHHHHHHHHHhCcCCCEEEEEEcCCC--CC
Confidence 57887 455544577888878765 6666655 66676662 11245566 58888999999999986432 12
Q ss_pred chhhHHHHhCC----eEEEECC
Q 020509 182 TGYNLISTIYG----KVTYVPR 199 (325)
Q Consensus 182 tGN~ll~~LlG----~V~~V~r 199 (325)
......|.-+| +++-|+.
T Consensus 170 ~~Q~~Qm~t~g~~Nv~vi~V~G 191 (460)
T cd01560 170 PIQELQMTTLPADNVHVVAVEG 191 (460)
T ss_pred HHHHHHHHhhCCCceEEEEEcC
Confidence 23344566666 3455543
No 89
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=63.50 E-value=37 Score=30.68 Aligned_cols=49 Identities=20% Similarity=0.077 Sum_probs=33.4
Q ss_pred HhhHHhhHHHhhhCCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecc
Q 020509 126 ARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (325)
Q Consensus 126 ~RKLeylL~dA~~~G~~~LVT~GG~QSNH~~AtAaaAa~lGLkcvlvlrg 175 (325)
..+.-.-|+..+++.--+||+.|| ..--+.|+|..+.+.|=+++.++..
T Consensus 17 ~~~~A~~lG~~la~~g~~lV~GGg-~~GlM~a~a~ga~~~gG~viGi~p~ 65 (178)
T TIGR00730 17 YKELAAELGAYLAGQGWGLVYGGG-RVGLMGAIADAAMENGGTAVGVNPS 65 (178)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCC-hHhHHHHHHHHHHhcCCeEEEecch
Confidence 445555556555544445665554 2337899999999999999999854
No 90
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=61.08 E-value=1.1e+02 Score=31.11 Aligned_cols=91 Identities=15% Similarity=0.067 Sum_probs=54.8
Q ss_pred CeEEEEecCCCCCCC-CChhHhh-HHhhHHHhhhCCCCeEEE---eCcccchHH----HHHHHHHHHhCCeEEE--Eecc
Q 020509 107 RCFYVVRDDLLHPLV-NGNKARK-MDALLPLLEDHIVTDLVT---CGGCQSAHA----TAVAVSCAERGLKSHL--LLRG 175 (325)
Q Consensus 107 ~~l~IKRDDL~h~~l-gGNK~RK-LeylL~dA~~~G~~~LVT---~GG~QSNH~----~AtAaaAa~lGLkcvl--vlrg 175 (325)
+.+-+|=+.- +.+ ..++..| +-.-+.+|++.|++.|.. .|+-..+.+ .+++.-|.++||+.++ +.|+
T Consensus 126 iplIlkln~~--t~l~~~~~~~~~l~~sVedAlrLGAdAV~~tvy~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG 203 (348)
T PRK09250 126 IPFILKLNHN--ELLSYPNTYDQALTASVEDALRLGAVAVGATIYFGSEESRRQIEEISEAFEEAHELGLATVLWSYLRN 203 (348)
T ss_pred CCEEEEeCCC--CCCCCCCCCcccceecHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecccC
Confidence 4455554432 223 4444444 444589999999998766 677665554 4667788999999887 4466
Q ss_pred ccCCccc-----h-----hhHHHHhCC-eEEEECC
Q 020509 176 EQPQILT-----G-----YNLISTIYG-KVTYVPR 199 (325)
Q Consensus 176 e~~~~~t-----G-----N~ll~~LlG-~V~~V~r 199 (325)
+...... . -..+..-+| +|+=+.-
T Consensus 204 ~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv~y 238 (348)
T PRK09250 204 SAFKKDGDYHTAADLTGQANHLAATIGADIIKQKL 238 (348)
T ss_pred cccCCcccccccHHHHHHHHHHHHHHcCCEEEecC
Confidence 5432211 1 122345578 8776654
No 91
>PF10931 DUF2735: Protein of unknown function (DUF2735); InterPro: IPR021232 Some members in this family of proteins are annotated as glutamine synthetase translation inhibitor however this function can not be confirmed.
Probab=59.71 E-value=6.4 Score=29.43 Aligned_cols=40 Identities=13% Similarity=0.070 Sum_probs=28.1
Q ss_pred cEEEEeCCCcchhhhhhhcccc-cccccccceEEeeecccc
Q 020509 259 KVLIVNEGAGDAVALLVLIPGS-FTWKKKGYKICCGCWYWD 298 (325)
Q Consensus 259 ~~y~ip~GGSnaiG~lGyi~~~-~e~~~~~~~~~~~~~~~~ 298 (325)
++|--|.||...+.-+.=...+ .+-....+.+|++|||-|
T Consensus 3 kIYQFPvggr~~~~~~r~~~~~~~~a~~~~~~~~~~sWYHe 43 (51)
T PF10931_consen 3 KIYQFPVGGRAGLSRRRRAWPAERAAPPVCPAADSGSWYHE 43 (51)
T ss_pred eEeecccccchhhhhhhhcccccccccccCceecCccchHH
Confidence 6788899998877776522222 222367889999999965
No 92
>PLN02538 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
Probab=57.72 E-value=57 Score=35.00 Aligned_cols=91 Identities=15% Similarity=0.193 Sum_probs=53.1
Q ss_pred HHhhHHHhhhCCCC---eEEEeCcccc--hHHHHHHHHHHHhCCe---EEEEeccccCCccchhhH-------HHHh---
Q 020509 129 MDALLPLLEDHIVT---DLVTCGGCQS--AHATAVAVSCAERGLK---SHLLLRGEQPQILTGYNL-------ISTI--- 190 (325)
Q Consensus 129 LeylL~dA~~~G~~---~LVT~GG~QS--NH~~AtAaaAa~lGLk---cvlvlrge~~~~~tGN~l-------l~~L--- 190 (325)
|..++..+ ..+.= .|+|=||++| +|+.|+..+|++.|++ .|+++-|.+....++--+ +..+
T Consensus 117 l~~~~~~~-~~~~lHl~GL~SdGGVHSh~~Hl~al~~~a~~~gv~~v~vH~f~DGRDt~p~S~~~yl~~l~~~l~~~~~~ 195 (558)
T PLN02538 117 FKYIKEAF-ATGTLHLIGLLSDGGVHSRLDQLQLLLKGAAERGAKRIRVHVLTDGRDVPDGSSVGFVETLEKDLAELREK 195 (558)
T ss_pred HHHHHHHh-cCCeeEEEEeccCCCcccHHHHHHHHHHHHHHcCCCeEEEEEEcCCCCCCcccHHHHHHHHHHHHHHhhcC
Confidence 34445444 23333 4667899999 8999999999999993 456666666443333111 2222
Q ss_pred -C-CeEEEECCC-Cc------cchHHHHHHHHHHhcccc
Q 020509 191 -Y-GKVTYVPRT-HY------AHRIEMLKSYANLVAGNN 220 (325)
Q Consensus 191 -l-G~V~~V~r~-~y------~~kda~~e~~~~~~~Gas 220 (325)
. |+|-.|..- -| ...+....+|..++.|..
T Consensus 196 g~~g~iAsv~GR~yyaMDR~d~rW~rv~~ay~alv~g~~ 234 (558)
T PLN02538 196 GCDARIASGGGRMYVTMDRYENDWNVVKRGWDAHVLGEA 234 (558)
T ss_pred CCcEEEEEEeCCceeecccccccHHHHHHHHHHHhcCCC
Confidence 1 344333222 11 245567778877776643
No 93
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=53.74 E-value=1.5e+02 Score=26.24 Aligned_cols=48 Identities=19% Similarity=0.037 Sum_probs=32.6
Q ss_pred HhhHHhhHHHhhhCCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecc
Q 020509 126 ARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (325)
Q Consensus 126 ~RKLeylL~dA~~~G~~~LVT~GG~QSNH~~AtAaaAa~lGLkcvlvlrg 175 (325)
..+.-.-|+..+++.--+||+ ||.. --+.++|..|.+.|-+++.++..
T Consensus 16 ~~~~A~~lg~~La~~g~~lv~-Gg~~-GlM~a~a~ga~~~gg~viGVlp~ 63 (159)
T TIGR00725 16 LYEIAYRLGKELAKKGHILIN-GGRT-GVMEAVSKGAREAGGLVVGILPD 63 (159)
T ss_pred HHHHHHHHHHHHHHCCCEEEc-CCch-hHHHHHHHHHHHCCCeEEEECCh
Confidence 455555555554333336776 5553 58888888999999999999854
No 94
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=51.15 E-value=2.3e+02 Score=27.91 Aligned_cols=70 Identities=11% Similarity=-0.021 Sum_probs=46.8
Q ss_pred CeEEEEecCCCCCCCCChhHhhHHhhHHHhhhCCCCeEEE---eCcccchH----HHHHHHHHHHhCCeEEEEe--cccc
Q 020509 107 RCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVT---CGGCQSAH----ATAVAVSCAERGLKSHLLL--RGEQ 177 (325)
Q Consensus 107 ~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G~~~LVT---~GG~QSNH----~~AtAaaAa~lGLkcvlvl--rge~ 177 (325)
+.+-||..+-++.. -.+=.-.+-..+.+|.+.|++.|-. +|+-++.- ...+...|.++||+.++.+ |+..
T Consensus 78 vplivkl~~~t~l~-~~~~~~~~~~~ve~ai~lgadAV~~~Vy~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~ 156 (265)
T COG1830 78 VPLIVKLNGSTSLS-PDPNDQVLVATVEDAIRLGADAVGATVYVGSETEREMIENISQVVEDAHELGMPLVAWAYPRGPA 156 (265)
T ss_pred cCEEEEeccccccC-CCcccceeeeeHHHHHhCCCcEEEEEEecCCcchHHHHHHHHHHHHHHHHcCCceEEEEeccCCc
Confidence 45777777765532 1122334566788999999998765 56665543 4556778999999999844 5544
No 95
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=44.89 E-value=1.1e+02 Score=28.32 Aligned_cols=51 Identities=22% Similarity=0.006 Sum_probs=36.0
Q ss_pred HhhHHhhHHHhhhCCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEeccccC
Q 020509 126 ARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQP 178 (325)
Q Consensus 126 ~RKLeylL~dA~~~G~~~LVT~GG~QSNH~~AtAaaAa~lGLkcvlvlrge~~ 178 (325)
...+-+-++..+..-..-|+|-|+.. .+.|.+-.|.+.|-+++.++...+.
T Consensus 32 ~~~~a~~lg~~la~~g~~V~tGG~~G--iMea~~~gA~~~gg~~vGi~p~~~~ 82 (205)
T COG1611 32 YYELARELGRELAKRGLLVITGGGPG--VMEAVARGALEAGGLVVGILPGLLH 82 (205)
T ss_pred HHHHHHHHHHHHHhCCcEEEeCCchh--hhhHHHHHHHHcCCeEEEecCCCch
Confidence 45555555555443335555656655 9999999999999999999876543
No 96
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=44.70 E-value=25 Score=35.24 Aligned_cols=141 Identities=13% Similarity=0.019 Sum_probs=76.3
Q ss_pred CCChhHhhHHhhHHHhhhCCCCeEEEeCcccchH-HHHHHHHHHHhCCeEEEEeccccCCc--cchhhHH-HHhCC-eEE
Q 020509 121 VNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAH-ATAVAVSCAERGLKSHLLLRGEQPQI--LTGYNLI-STIYG-KVT 195 (325)
Q Consensus 121 lgGNK~RKLeylL~dA~~~G~~~LVT~GG~QSNH-~~AtAaaAa~lGLkcvlvlrge~~~~--~tGN~ll-~~LlG-~V~ 195 (325)
+||=-..-+...-+-|.+.|-++|+-.=+.--|- ..-+=.....+|....++=.+.+... ..-...- -+--| +..
T Consensus 70 ~GgiQSNh~r~tAavA~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~~e~~~~~g~kpy 149 (323)
T COG2515 70 YGGIQSNHVRQTAAVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEELAEEVRKQGGKPY 149 (323)
T ss_pred ecccchhHHHHHHHHHHhcCCcEEEEEeccccccccccchhhhhhcCceEEEecCCCChhhchhhHHHHHHHHhcCCCCc
Confidence 4443334444455667788988877643332010 00122355677888777755544321 1011110 11124 444
Q ss_pred EECCCCccchHHHHHHHHHHhcccccchhhHHHHHHHHHHHhhhhhccccccchhhhhhccCCcEEEEeCCCcchhhhh-
Q 020509 196 YVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALL- 274 (325)
Q Consensus 196 ~V~r~~y~~kda~~e~~~~~~~GasG~vr~~~eI~~qe~~~q~~~~~~~~~~d~~~~l~~~g~~~y~ip~GGSnaiG~l- 274 (325)
.++.+. .. +.|+-|+|+.+.||++|+. ++ -..|.++++|++|++--|++
T Consensus 150 vIp~GG-~~-----------~~g~lGyv~~a~Ei~~Q~~-----------------~~-~~fD~vVva~gs~gT~AGl~~ 199 (323)
T COG2515 150 VIPEGG-SS-----------PLGALGYVRLALEIAEQAE-----------------QL-LKFDSVVVAPGSGGTHAGLLV 199 (323)
T ss_pred EeccCC-cC-----------ccccccHHHHHHHHHHHHh-----------------hc-cCCCEEEEeCCCcchHHHHHH
Confidence 444433 11 1344499999999998875 24 67788999999999876653
Q ss_pred hhcccccccccccceEEeeec
Q 020509 275 VLIPGSFTWKKKGYKICCGCW 295 (325)
Q Consensus 275 Gyi~~~~e~~~~~~~~~~~~~ 295 (325)
||.-+ -..-++|=|.|.
T Consensus 200 g~~~~----~~~~~ViG~~v~ 216 (323)
T COG2515 200 GLAQL----GPDVEVIGIDVS 216 (323)
T ss_pred Hhhhc----cCCCceEEEeec
Confidence 33222 144556666663
No 97
>PRK08227 autoinducer 2 aldolase; Validated
Probab=44.34 E-value=2.9e+02 Score=26.86 Aligned_cols=45 Identities=4% Similarity=-0.065 Sum_probs=33.0
Q ss_pred HHhhHHHhhhCCCCeEEE---eCcccchH----HHHHHHHHHHhCCeEEEEe
Q 020509 129 MDALLPLLEDHIVTDLVT---CGGCQSAH----ATAVAVSCAERGLKSHLLL 173 (325)
Q Consensus 129 LeylL~dA~~~G~~~LVT---~GG~QSNH----~~AtAaaAa~lGLkcvlvl 173 (325)
|-.-+.+|.+.|+|.|.. .|+-+-+. +..++..|.++||+.+++.
T Consensus 96 l~~sVeeAvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla~~ 147 (264)
T PRK08227 96 VAVDMEDAVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMAVT 147 (264)
T ss_pred ceecHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEe
Confidence 445588999999998876 56554444 3456678899999988744
No 98
>PRK06852 aldolase; Validated
Probab=43.02 E-value=3e+02 Score=27.34 Aligned_cols=71 Identities=13% Similarity=0.087 Sum_probs=43.6
Q ss_pred HHhhHHHhhhCC------CCeEEE---eCcccchHH----HHHHHHHHHhCCeEEE--EeccccCCc-cc-----hhhHH
Q 020509 129 MDALLPLLEDHI------VTDLVT---CGGCQSAHA----TAVAVSCAERGLKSHL--LLRGEQPQI-LT-----GYNLI 187 (325)
Q Consensus 129 LeylL~dA~~~G------~~~LVT---~GG~QSNH~----~AtAaaAa~lGLkcvl--vlrge~~~~-~t-----GN~ll 187 (325)
+-.-+.+|++.| ++.|.. .|+-+-+.+ ..++..|.++||+.++ +-|++.... .. .-..+
T Consensus 117 l~~sVeeAvrlG~~~~~~AdAV~v~v~~Gs~~E~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRi 196 (304)
T PRK06852 117 QLLDVEQVVEFKENSGLNILGVGYTIYLGSEYESEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGV 196 (304)
T ss_pred ceecHHHHHhcCCccCCCceEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEeeccCcccCCCccHHHHHHHHHH
Confidence 444578899988 667765 576554543 4667788999999876 345544221 11 11223
Q ss_pred HHhCC-eEEEECC
Q 020509 188 STIYG-KVTYVPR 199 (325)
Q Consensus 188 ~~LlG-~V~~V~r 199 (325)
..-+| +|+=+.-
T Consensus 197 aaELGADIVKv~y 209 (304)
T PRK06852 197 AACLGADFVKVNY 209 (304)
T ss_pred HHHHcCCEEEecC
Confidence 44578 8776654
No 99
>PLN02282 phosphoglycerate kinase
Probab=41.94 E-value=4.2e+02 Score=27.46 Aligned_cols=66 Identities=18% Similarity=0.187 Sum_probs=44.7
Q ss_pred CCeEEEEecCCCCCCCC-C-----hhHhhHHhhHHHhhhCCCCeEEE--eCccc-chH---HH-HHHHHHHHhCCeEEEE
Q 020509 106 DRCFYVVRDDLLHPLVN-G-----NKARKMDALLPLLEDHIVTDLVT--CGGCQ-SAH---AT-AVAVSCAERGLKSHLL 172 (325)
Q Consensus 106 G~~l~IKRDDL~h~~lg-G-----NK~RKLeylL~dA~~~G~~~LVT--~GG~Q-SNH---~~-AtAaaAa~lGLkcvlv 172 (325)
|.+++| |=|++.|.-. | .++|.--..|....++|++.|+. .|=++ .+- +. ....+...+|.+...+
T Consensus 17 gK~Vlv-RvD~NvPi~~~g~I~dd~RI~a~lpTI~~l~~~gakvVl~SHlGRP~g~~~~~SL~~va~~Ls~lL~~~V~fv 95 (401)
T PLN02282 17 GKRVFV-RVDLNVPLDDNSNITDDTRIRAAVPTIKYLMGHGARVILCSHLGRPKGVTPKYSLKPLVPRLSELLGVEVVMA 95 (401)
T ss_pred CCEEEE-EeecCCccCCCCcccCcHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCcccCHHHHHHHHHHHHCCCeEEC
Confidence 566766 8999998743 6 67888888888888999987764 66443 121 22 2334667888886554
No 100
>PF09320 DUF1977: Domain of unknown function (DUF1977); InterPro: IPR015399 This C-terminal domain is functionally uncharacterised and predominantly found in Dnaj-like proteins.
Probab=39.76 E-value=28 Score=28.73 Aligned_cols=42 Identities=12% Similarity=0.078 Sum_probs=31.0
Q ss_pred CCcCccCCCCccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHH
Q 020509 92 TCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPL 135 (325)
Q Consensus 92 ~tp~l~~~~Ls~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~d 135 (325)
+++-+...+.+...++..||+-++.... ++.|.++||.-+..
T Consensus 16 ~s~~y~~~R~T~~~~V~YYV~~~f~~~y--~~~~l~~lE~~VE~ 57 (107)
T PF09320_consen 16 PSSPYTVERTTPNLKVPYYVNPDFVQKY--SSSKLRQLERQVEN 57 (107)
T ss_pred CCCCCceeeEcCCCCcceeECchhhhhc--CHHHHHHHHHHHHH
Confidence 4444444444555589999999777664 99999999998875
No 101
>PLN03032 serine decarboxylase; Provisional
Probab=39.20 E-value=2.7e+02 Score=28.04 Aligned_cols=86 Identities=13% Similarity=0.023 Sum_probs=45.2
Q ss_pred ChhHhhHHhhHHHhh--hCCC--C---eEEEeCcccchHHHHHHHHHHHhCCeEEEEeccccCCccchhhHHHHhCC-eE
Q 020509 123 GNKARKMDALLPLLE--DHIV--T---DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYG-KV 194 (325)
Q Consensus 123 GNK~RKLeylL~dA~--~~G~--~---~LVT~GG~QSNH~~AtAaaAa~lGLkcvlvlrge~~~~~tGN~ll~~LlG-~V 194 (325)
|.+.|++|..+-+-. -.|+ + .++|.||..||.....++ +...-+.+++.... .+.-.....+++| .+
T Consensus 61 g~~a~~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~~a--r~~~~~~~vi~s~~---~H~Sv~kaa~~lg~~~ 135 (374)
T PLN03032 61 GVHSRQFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVG--REVFPDGILYASRE---SHYSVFKAARMYRMEA 135 (374)
T ss_pred CccHHHHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHHHH--HHhCCCcEEEeCCC---ceeHHHHHHHHcCCCC
Confidence 556888887765532 2232 2 389999999997444332 22211234554322 2333444466778 66
Q ss_pred EEECCCC-cc-chHHHHHHHH
Q 020509 195 TYVPRTH-YA-HRIEMLKSYA 213 (325)
Q Consensus 195 ~~V~r~~-y~-~kda~~e~~~ 213 (325)
+.|+... .+ +.+++.+.+.
T Consensus 136 ~~V~~d~~g~id~~~L~~~i~ 156 (374)
T PLN03032 136 VKVPTLPSGEIDYDDLERALA 156 (374)
T ss_pred eEeeeCCCCcCcHHHHHHHHH
Confidence 5554332 22 3455555443
No 102
>PLN03034 phosphoglycerate kinase; Provisional
Probab=38.59 E-value=5.1e+02 Score=27.56 Aligned_cols=66 Identities=21% Similarity=0.192 Sum_probs=43.1
Q ss_pred CCeEEEEecCCCCCC-CCCh-----hHhhHHhhHHHhhhCCCCeEEE--eCccc-ch----HHHHHHHHHHHhCCeEEEE
Q 020509 106 DRCFYVVRDDLLHPL-VNGN-----KARKMDALLPLLEDHIVTDLVT--CGGCQ-SA----HATAVAVSCAERGLKSHLL 172 (325)
Q Consensus 106 G~~l~IKRDDL~h~~-lgGN-----K~RKLeylL~dA~~~G~~~LVT--~GG~Q-SN----H~~AtAaaAa~lGLkcvlv 172 (325)
|.+++| |=|++.|. -.|+ ++|.--..|....++|++.||. .|=++ .+ --.-...+...+|.+...+
T Consensus 92 GK~Vlv-RvD~NvPi~~~g~I~Dd~RI~a~lpTI~~L~~~gakvVl~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~fv 170 (481)
T PLN03034 92 GKKVFV-RADLNVPLDDNQNITDDTRIRAAIPTIKYLISNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKA 170 (481)
T ss_pred CCEEEE-EeccCCCcCCCCcccChHhHHHHHHHHHHHHHCCCeEEEEEecCCCCCCCcccCHHHHHHHHHHHhCCCeEEC
Confidence 667776 99999986 2353 5677777777888999988775 66442 11 1222345666788776554
No 103
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=38.36 E-value=2.7e+02 Score=26.29 Aligned_cols=91 Identities=19% Similarity=0.226 Sum_probs=54.5
Q ss_pred ccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHhhhCCCCeEEEeCcccch-HHHHHHHHHHHhCCeEEEEeccccCCc
Q 020509 102 MRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSA-HATAVAVSCAERGLKSHLLLRGEQPQI 180 (325)
Q Consensus 102 s~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G~~~LVT~GG~QSN-H~~AtAaaAa~lGLkcvlvlrge~~~~ 180 (325)
++..|..++...- .|-+-..++.+...+++.|++. |.||+..|+ |-.=.-.+|.++||+++.-+.+.++..
T Consensus 54 A~algiPl~~~~~-------~~~~e~~~~~l~~~l~~~gv~~-vv~GdI~s~~qr~~~e~vc~~~gl~~~~PLW~~d~~~ 125 (222)
T TIGR00289 54 AEAVGIPLIKLYT-------SGEEEKEVEDLAGQLGELDVEA-LCIGAIESNYQKSRIDKVCRELGLKSIAPLWHADPEK 125 (222)
T ss_pred HHHcCCCeEEEEc-------CCchhHHHHHHHHHHHHcCCCE-EEECccccHHHHHHHHHHHHHcCCEEeccccCCCHHH
Confidence 3455776655431 2223334444444445667776 457888876 555677899999999999998766432
Q ss_pred cchhhHHHHhCC-eEEEECCCCccc
Q 020509 181 LTGYNLISTIYG-KVTYVPRTHYAH 204 (325)
Q Consensus 181 ~tGN~ll~~LlG-~V~~V~r~~y~~ 204 (325)
. ..+.-.| +.+.|.-..+.+
T Consensus 126 l----~e~i~~Gf~aiIv~v~~~gL 146 (222)
T TIGR00289 126 L----MYEVAEKFEVIIVSVSAMGL 146 (222)
T ss_pred H----HHHHHcCCeEEEEEEccCCC
Confidence 2 2233468 766654443333
No 104
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=38.28 E-value=1.7e+02 Score=30.05 Aligned_cols=87 Identities=15% Similarity=0.167 Sum_probs=55.0
Q ss_pred eEEEEecCCCCCCCCChhHhh-HHhhHHHh----hhCCC--------------------CeEEEeCcccchHHHHHHHHH
Q 020509 108 CFYVVRDDLLHPLVNGNKARK-MDALLPLL----EDHIV--------------------TDLVTCGGCQSAHATAVAVSC 162 (325)
Q Consensus 108 ~l~IKRDDL~h~~lgGNK~RK-LeylL~dA----~~~G~--------------------~~LVT~GG~QSNH~~AtAaaA 162 (325)
++|+|+|..++ .-|.=|+|- +..+|..| ++.|- +.=|..|.. -|-+.......
T Consensus 102 ~llLK~DshLp-IsGSIKARGGIYEVL~hAE~LAle~Gll~~~DDYs~L~~~~f~~FFs~ysIaVGST-GNLGlSIGI~s 179 (443)
T COG3048 102 RLLLKKDSHLP-ISGSIKARGGIYEVLKHAEKLALEAGLLTLEDDYSILLSEEFKDFFSRYSIAVGST-GNLGLSIGIMS 179 (443)
T ss_pred ceeeeccCCCC-cccceeccccHHHHHHHHHHHHHhcCcccccchHHHhhcHHHHHHHHhheEeeccc-Cccceehhhhh
Confidence 79999998765 335568875 23333333 33332 234556655 48889999999
Q ss_pred HHhCCeEEEEeccccCCccchhhHHHHhCC-eEEEECC
Q 020509 163 AERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPR 199 (325)
Q Consensus 163 a~lGLkcvlvlrge~~~~~tGN~ll~~LlG-~V~~V~r 199 (325)
+.+|++..+.|..+. ....-+.++ .-| +|+-...
T Consensus 180 A~lGF~vtVHMSADA-r~WKKd~LR--s~gV~ViEYe~ 214 (443)
T COG3048 180 AALGFKVTVHMSADA-RAWKKDKLR--SHGVTVVEYEQ 214 (443)
T ss_pred hhhcceEEEEecchH-HHHHHHHHH--hcCceEEEecc
Confidence 999999999997653 222234433 347 6655543
No 105
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=35.04 E-value=84 Score=30.70 Aligned_cols=38 Identities=18% Similarity=0.214 Sum_probs=31.9
Q ss_pred hhCCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEec
Q 020509 137 EDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLR 174 (325)
Q Consensus 137 ~~~G~~~LVT~GG~QSNH~~AtAaaAa~lGLkcvlvlr 174 (325)
++..+|.+|-.||-.|+..+-++.+|++.|.++..+=.
T Consensus 206 La~~vD~miVIGg~~SsNT~kL~eia~~~~~~t~~Ie~ 243 (281)
T PF02401_consen 206 LAKEVDAMIVIGGKNSSNTRKLAEIAKEHGKPTYHIET 243 (281)
T ss_dssp HHCCSSEEEEES-TT-HHHHHHHHHHHHCTTCEEEESS
T ss_pred HHhhCCEEEEecCCCCccHHHHHHHHHHhCCCEEEeCC
Confidence 56779999999999999999999999999998877743
No 106
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=34.47 E-value=1.5e+02 Score=21.61 Aligned_cols=50 Identities=14% Similarity=0.111 Sum_probs=28.4
Q ss_pred CCCCCC-hhHhhHHhhHHHhhhCCCCeEEE--eCcccchHHHHHHHHHHHhCCeE
Q 020509 118 HPLVNG-NKARKMDALLPLLEDHIVTDLVT--CGGCQSAHATAVAVSCAERGLKS 169 (325)
Q Consensus 118 h~~lgG-NK~RKLeylL~dA~~~G~~~LVT--~GG~QSNH~~AtAaaAa~lGLkc 169 (325)
|+.++. +...+++.++..|++.|.+.+.. .+-.+ -...+-..+++.|++.
T Consensus 5 Ht~~S~~~~~~~~~~~~~~a~~~g~~~v~iTDh~~~~--~~~~~~~~~~~~gi~~ 57 (67)
T smart00481 5 HSDYSLLDGALSPEELVKRAKELGLKAIAITDHGNLF--GAVEFYKAAKKAGIKP 57 (67)
T ss_pred ccCCccccccCCHHHHHHHHHHcCCCEEEEeeCCccc--CHHHHHHHHHHcCCeE
Confidence 444443 44566778888888888887643 22221 1233344556677764
No 107
>COG4393 Predicted membrane protein [Function unknown]
Probab=34.28 E-value=19 Score=36.58 Aligned_cols=27 Identities=37% Similarity=0.765 Sum_probs=22.5
Q ss_pred ccccceEEeeeccccCceecccchhhhhhhcC--CCccCC
Q 020509 284 KKKGYKICCGCWYWDNSCWFRSWSHMFRASMG--GNCNSI 321 (325)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 321 (325)
.+.+++||.+|+. |||-.|.| |.||.|
T Consensus 347 ~e~dqvICv~C~V-----------rmfipSIGk~GGCNPv 375 (405)
T COG4393 347 MEGDQVICVRCDV-----------RMFIPSIGKKGGCNPV 375 (405)
T ss_pred eECCEEEEEEccE-----------EEEcccCCCCCCCCCC
Confidence 3567789999986 89999998 889976
No 108
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=33.35 E-value=91 Score=26.45 Aligned_cols=60 Identities=15% Similarity=0.215 Sum_probs=39.1
Q ss_pred CCeEEEEecCCCCCCCCChhHhhHHhhHHHhhhCCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEec
Q 020509 106 DRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLR 174 (325)
Q Consensus 106 G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G~~~LVT~GG~QSNH~~AtAaaAa~lGLkcvlvlr 174 (325)
+..++.|+ ....+.+ -.|+..| ++.|.++||-+|-.-..=..+||.-|...|++++++-.
T Consensus 86 ~~~vi~K~---~~saf~~---t~L~~~L---~~~gi~~vil~G~~t~~CV~~Ta~~a~~~g~~v~v~~D 145 (174)
T PF00857_consen 86 GDPVIEKN---RYSAFFG---TDLDEIL---RKRGIDTVILCGVATDVCVLATARDAFDRGYRVIVVED 145 (174)
T ss_dssp TSEEEEES---SSSTTTT---SSHHHHH---HHTTESEEEEEEESTTTHHHHHHHHHHHTT-EEEEEEE
T ss_pred ccceEEee---ccccccc---ccccccc---cccccceEEEcccccCcEEehhHHHHHHCCCEEEEECh
Confidence 44567776 1222322 2344444 46899999988877555567888888899999988864
No 109
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=33.24 E-value=72 Score=31.23 Aligned_cols=41 Identities=24% Similarity=0.240 Sum_probs=33.6
Q ss_pred hhCCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecccc
Q 020509 137 EDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (325)
Q Consensus 137 ~~~G~~~LVT~GG~QSNH~~AtAaaAa~lGLkcvlvlrge~ 177 (325)
++..+|.+|..||-.|+..+-++.+|+..|.+++.+-..++
T Consensus 205 la~~vD~miVVGg~nSsNT~rL~ei~~~~~~~t~~Ie~~~e 245 (280)
T TIGR00216 205 LAPEVDLMIVIGGKNSSNTTRLYEIAEEHGPPSYLIETAEE 245 (280)
T ss_pred HHhhCCEEEEECCCCCchHHHHHHHHHHhCCCEEEECChHH
Confidence 44568999999999999999999999999988777644433
No 110
>PLN02564 6-phosphofructokinase
Probab=33.24 E-value=6.1e+02 Score=26.96 Aligned_cols=46 Identities=15% Similarity=0.260 Sum_probs=33.8
Q ss_pred HHhhHHHhhhCCCCeEEEeCcccchHHH-HHHHHHHHhCCe--EEEEec
Q 020509 129 MDALLPLLEDHIVTDLVTCGGCQSAHAT-AVAVSCAERGLK--SHLLLR 174 (325)
Q Consensus 129 LeylL~dA~~~G~~~LVT~GG~QSNH~~-AtAaaAa~lGLk--cvlvlr 174 (325)
.+-.+...++.+.+.||..||-.|..+. .++..+++.|++ ++.+-.
T Consensus 165 ~~~iv~~L~~~~Id~LivIGGDGS~~gA~~L~e~~~~~g~~i~VIGIPK 213 (484)
T PLN02564 165 TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPK 213 (484)
T ss_pred HHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEEecc
Confidence 4455666678999999999999988654 556677778988 555533
No 111
>cd01014 nicotinamidase_related Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.
Probab=33.02 E-value=1.1e+02 Score=26.21 Aligned_cols=38 Identities=16% Similarity=0.279 Sum_probs=32.3
Q ss_pred hhCCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEec
Q 020509 137 EDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLR 174 (325)
Q Consensus 137 ~~~G~~~LVT~GG~QSNH~~AtAaaAa~lGLkcvlvlr 174 (325)
++.|.++||-+|-.-..=+.+||.-|.+.|++++++..
T Consensus 95 ~~~gi~~viv~G~~td~CV~~Ta~~a~~~g~~v~vi~D 132 (155)
T cd01014 95 REAGIDHLVICGAMTEMCVDTTVRSAFDLGYDVTVVAD 132 (155)
T ss_pred HHCCCCEEEEEeeccchhHHHHHHHHHHCCCcEEEecc
Confidence 57889999999888766788899999999999988754
No 112
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=32.60 E-value=2e+02 Score=30.06 Aligned_cols=109 Identities=17% Similarity=0.196 Sum_probs=60.2
Q ss_pred EEEeCcccchHHHHHHHHHHHhCCeEEEEeccccCCccchhhHHHHhCCeEEEECCCCc-c--chHHHHHHHHHHhcccc
Q 020509 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGKVTYVPRTHY-A--HRIEMLKSYANLVAGNN 220 (325)
Q Consensus 144 LVT~GG~QSNH~~AtAaaAa~lGLkcvlvlrge~~~~~tGN~ll~~LlG~V~~V~r~~y-~--~kda~~e~~~~~~~Gas 220 (325)
+|..|+.- .....|+-.+..|.+..++ ..+.....-|..+. .||-+.+|++.+. + .+|.+.-+..+|+ |++
T Consensus 8 vivvgagl--aglvaa~elA~aG~~V~il-dQEgeqnlGGQAfW--SfGGLF~vdSPEQRRlgirDsldLArqDW~-gtA 81 (552)
T COG3573 8 VIVVGAGL--AGLVAAAELADAGKRVLIL-DQEGEQNLGGQAFW--SFGGLFLVDSPEQRRLGIRDSLDLARQDWF-GTA 81 (552)
T ss_pred EEEECccH--HHHHHHHHHHhcCceEEEE-cccccccccceeee--ecccEEEecCHHHhhcccchhHHHHHHhhh-ccc
Confidence 44455554 3444455566788885554 43332233344443 4676677766543 2 5677766777776 344
Q ss_pred c--------chhhHHHHH---HHHHHHhhhhhccccccchhhhhhccCCcEEEEeC----CCcchhhh
Q 020509 221 G--------DVVWCNEIF---EASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNE----GAGDAVAL 273 (325)
Q Consensus 221 G--------~vr~~~eI~---~qe~~~q~~~~~~~~~~d~~~~l~~~g~~~y~ip~----GGSnaiG~ 273 (325)
+ ...|+..-+ +-|.+. =+.+.|-+.+.++| ||+++.|-
T Consensus 82 ~FDRPEDhWPr~WAeAYl~FAAGEkR~---------------WL~~~GmrwFPvVGWAERGG~~A~gh 134 (552)
T COG3573 82 AFDRPEDHWPRQWAEAYLDFAAGEKRS---------------WLHRRGMRWFPVVGWAERGGSDAQGH 134 (552)
T ss_pred ccCCccccchHHHHHHHHhhhccchhH---------------HHHHcCCeeeeeccchhhCCcccCCC
Confidence 3 346776433 223322 25566777776664 77777653
No 113
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=31.83 E-value=46 Score=29.34 Aligned_cols=99 Identities=18% Similarity=0.167 Sum_probs=54.1
Q ss_pred CcccccccChHHHHHHHhhccccccCCCCccceeeccccccCCCCCCCccccccCCCCcCccCCCCccCCCCeEEEEecC
Q 020509 36 QGICNVRMSGEELLSRLLDRKWALTSPDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDD 115 (325)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~r~w~lp~p~~~I~~~~l~~~~~~~~~g~~~pi~~l~~~tp~l~~~~Ls~~~G~~l~IKRDD 115 (325)
..+.+++.+..+++..|..-+ ..-+++.+.- |+.....+.. . ++.+|.+|....=+
T Consensus 54 iPVV~I~~s~~Dil~al~~a~-------~~~~~Iavv~-----~~~~~~~~~~---~---------~~ll~~~i~~~~~~ 109 (176)
T PF06506_consen 54 IPVVEIPISGFDILRALAKAK-------KYGPKIAVVG-----YPNIIPGLES---I---------EELLGVDIKIYPYD 109 (176)
T ss_dssp S-EEEE---HHHHHHHHHHCC-------CCTSEEEEEE-----ESS-SCCHHH---H---------HHHHT-EEEEEEES
T ss_pred CCEEEECCCHhHHHHHHHHHH-------hcCCcEEEEe-----cccccHHHHH---H---------HHHhCCceEEEEEC
Confidence 568889999999999887644 1124554433 2332212222 2 22224455444332
Q ss_pred CCCCCCCChhHhhHHhhHHHhhhCCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecc
Q 020509 116 LLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (325)
Q Consensus 116 L~h~~lgGNK~RKLeylL~dA~~~G~~~LVT~GG~QSNH~~AtAaaAa~lGLkcvlvlrg 175 (325)
+ ..-++..+.++++.|++.+| ||.. +..+|+++|++++++..+
T Consensus 110 --~-------~~e~~~~i~~~~~~G~~viV--Gg~~------~~~~A~~~gl~~v~i~sg 152 (176)
T PF06506_consen 110 --S-------EEEIEAAIKQAKAEGVDVIV--GGGV------VCRLARKLGLPGVLIESG 152 (176)
T ss_dssp --S-------HHHHHHHHHHHHHTT--EEE--ESHH------HHHHHHHTTSEEEESS--
T ss_pred --C-------HHHHHHHHHHHHHcCCcEEE--CCHH------HHHHHHHcCCcEEEEEec
Confidence 1 46788899999999999874 4443 256779999999887543
No 114
>PRK11440 putative hydrolase; Provisional
Probab=31.69 E-value=1.2e+02 Score=26.75 Aligned_cols=44 Identities=16% Similarity=0.216 Sum_probs=35.0
Q ss_pred hHHhhHHHhhhCCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEec
Q 020509 128 KMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLR 174 (325)
Q Consensus 128 KLeylL~dA~~~G~~~LVT~GG~QSNH~~AtAaaAa~lGLkcvlvlr 174 (325)
.|+.+| ++.|.++||-+|-.-..-+.+||.-|..+|++++++-.
T Consensus 111 ~L~~~L---~~~gi~~lii~Gv~T~~CV~~Ta~~A~~~gy~v~vv~D 154 (188)
T PRK11440 111 DLELQL---RRRGIDTIVLCGISTNIGVESTARNAWELGFNLVIAED 154 (188)
T ss_pred CHHHHH---HHCCCCEEEEeeechhHHHHHHHHHHHHCCCEEEEech
Confidence 466555 46899999999888766778899999999999888753
No 115
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=31.63 E-value=48 Score=28.63 Aligned_cols=30 Identities=27% Similarity=0.231 Sum_probs=24.3
Q ss_pred EEEeCcccchHHHHHHHHHHHhCCeEEEEecc
Q 020509 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (325)
Q Consensus 144 LVT~GG~QSNH~~AtAaaAa~lGLkcvlvlrg 175 (325)
|+-+|+.. -+++++.+++.+|++++++=..
T Consensus 1 L~I~GaG~--va~al~~la~~lg~~v~v~d~r 30 (136)
T PF13478_consen 1 LVIFGAGH--VARALARLAALLGFRVTVVDPR 30 (136)
T ss_dssp EEEES-ST--CHHHHHHHHHHCTEEEEEEES-
T ss_pred CEEEeCcH--HHHHHHHHHHhCCCEEEEEcCC
Confidence 46688887 7999999999999999988644
No 116
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=31.50 E-value=2.2e+02 Score=26.79 Aligned_cols=60 Identities=5% Similarity=-0.091 Sum_probs=35.3
Q ss_pred hhHHHhhhCCCCeEEE-----eCcc----cchHHHHHHHHHHHhCCeEEEEeccccCCccch-hhHHHHhCC
Q 020509 131 ALLPLLEDHIVTDLVT-----CGGC----QSAHATAVAVSCAERGLKSHLLLRGEQPQILTG-YNLISTIYG 192 (325)
Q Consensus 131 ylL~dA~~~G~~~LVT-----~GG~----QSNH~~AtAaaAa~lGLkcvlvlrge~~~~~tG-N~ll~~LlG 192 (325)
.++.+|.+.|++-||| |... .++.-.- -..+.+.|+...-.-..-|. .+.| |..+.+.+|
T Consensus 48 ~vi~~Ai~~~~dlIitHHP~~f~~~~~~~~~~~~~~-~~~li~~~I~vy~~Ht~lD~-~~~G~n~~La~~Lg 117 (249)
T TIGR00486 48 SVADEAVRLGADLIITHHPLIWKPLKRLIRGIKPGR-LKILLQNDISLYSAHTNLDA-HDGGNNDALARALG 117 (249)
T ss_pred HHHHHHHHCCCCEEEEcCccccCCcccccCCCHHHH-HHHHHHCCCeEEEeecchhc-CCCCHHHHHHHHcC
Confidence 4577888999999998 3321 1111112 34466778775554333332 2335 777888888
No 117
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=30.97 E-value=2.5e+02 Score=27.92 Aligned_cols=84 Identities=14% Similarity=0.120 Sum_probs=46.2
Q ss_pred HhhHHhhHHHhh--hCC----------CCeEEEeCcccchHHHHHHHHHH------HhC----CeEEEEeccccCCccch
Q 020509 126 ARKMDALLPLLE--DHI----------VTDLVTCGGCQSAHATAVAVSCA------ERG----LKSHLLLRGEQPQILTG 183 (325)
Q Consensus 126 ~RKLeylL~dA~--~~G----------~~~LVT~GG~QSNH~~AtAaaAa------~lG----Lkcvlvlrge~~~~~tG 183 (325)
..++|..+-+.+ -.| ...++|.||..||-...+|+--+ ..| -+.+++...+. +.-
T Consensus 77 ~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~a---H~S 153 (373)
T PF00282_consen 77 ATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQA---HYS 153 (373)
T ss_dssp HHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS----TH
T ss_pred cccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccccc---ccH
Confidence 778887775542 122 45799999999997665554322 224 34667765432 222
Q ss_pred hhHHHHhCC-eEEEECCCC-cc-chHHHHHHH
Q 020509 184 YNLISTIYG-KVTYVPRTH-YA-HRIEMLKSY 212 (325)
Q Consensus 184 N~ll~~LlG-~V~~V~r~~-y~-~kda~~e~~ 212 (325)
..--..++| .++.|+..+ ++ ..+++.+.+
T Consensus 154 ~~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l 185 (373)
T PF00282_consen 154 IEKAARILGLGVRKIPTDEDGRMDIEALEKAL 185 (373)
T ss_dssp HHHHHHHTTSEEEEE-BBTTSSB-HHHHHHHH
T ss_pred HHHhcceeeeEEEEecCCcchhhhHHHhhhhh
Confidence 233467789 777775443 33 334444443
No 118
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=30.20 E-value=2.2e+02 Score=27.69 Aligned_cols=75 Identities=23% Similarity=0.244 Sum_probs=41.2
Q ss_pred CCChhHhhHHhhHHHhhhCCCCeEE--E---eCccc-chHHHHHHHHHHHhCCeEEEEeccccCCccchh--hHHHHhCC
Q 020509 121 VNGNKARKMDALLPLLEDHIVTDLV--T---CGGCQ-SAHATAVAVSCAERGLKSHLLLRGEQPQILTGY--NLISTIYG 192 (325)
Q Consensus 121 lgGNK~RKLeylL~dA~~~G~~~LV--T---~GG~Q-SNH~~AtAaaAa~lGLkcvlvlrge~~~~~tGN--~ll~~LlG 192 (325)
+|+.. .+..+..|+++|+|+.| + +.+.. =--..++|++..+.|.. .++++.+..+..++. .++..++|
T Consensus 63 ~Gp~~---a~~~lr~aLAmGaDraili~d~~~~~~d~~~ta~~Laa~~~~~~~~-LVl~G~qa~D~~t~qvg~~lAe~Lg 138 (260)
T COG2086 63 MGPPQ---AEEALREALAMGADRAILITDRAFAGADPLATAKALAAAVKKIGPD-LVLTGKQAIDGDTGQVGPLLAELLG 138 (260)
T ss_pred ecchh---hHHHHHHHHhcCCCeEEEEecccccCccHHHHHHHHHHHHHhcCCC-EEEEecccccCCccchHHHHHHHhC
Confidence 45543 45567779999999754 3 33332 11134455555577777 333343333433332 24667788
Q ss_pred --eEEEECC
Q 020509 193 --KVTYVPR 199 (325)
Q Consensus 193 --~V~~V~r 199 (325)
.+.++++
T Consensus 139 ~P~~t~v~~ 147 (260)
T COG2086 139 WPQVTYVSK 147 (260)
T ss_pred CceeeeEEE
Confidence 6777654
No 119
>TIGR03614 RutB pyrimidine utilization protein B. RL Proc Natl Acad Sci U S A. 2006 Mar 28;103(13):5114-9. Epub 2006 Mar 15.
Probab=30.20 E-value=1.3e+02 Score=27.69 Aligned_cols=44 Identities=14% Similarity=0.096 Sum_probs=34.4
Q ss_pred hHHhhHHHhhhCCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEec
Q 020509 128 KMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLR 174 (325)
Q Consensus 128 KLeylL~dA~~~G~~~LVT~GG~QSNH~~AtAaaAa~lGLkcvlvlr 174 (325)
.|+.+| ++.|+++||-+|-.-..=+.+||.-|..+|++++++-.
T Consensus 141 ~L~~~L---r~~gI~~lvi~Gv~T~~CV~sTar~A~~~Gy~v~vv~D 184 (226)
T TIGR03614 141 PLDSML---RARGIRNLVFTGIATNVCVESTLRDGFHLEYFGVVLED 184 (226)
T ss_pred CHHHHH---HHCCCCEEEEeccCccHhHHHHHHHHHHCCCEEEEech
Confidence 455555 46899999988877655567888888899999998853
No 120
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
Probab=30.02 E-value=1.3e+02 Score=26.20 Aligned_cols=60 Identities=22% Similarity=0.276 Sum_probs=40.6
Q ss_pred CCeEEEEecCCCCCCCCChhHhhHHhhHHHhhhCCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEec
Q 020509 106 DRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLR 174 (325)
Q Consensus 106 G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G~~~LVT~GG~QSNH~~AtAaaAa~lGLkcvlvlr 174 (325)
+..++.|+- ...+.| -.|+..| ++.|.++||-+|-.-..-+.+||.-|..+|++++++-.
T Consensus 88 ~~~v~~K~~---~saF~~---t~L~~~L---~~~gi~~vvi~G~~t~~CV~~Ta~~A~~~Gy~v~vv~D 147 (179)
T cd01015 88 DEMVLVKKY---ASAFFG---TSLAATL---TARGVDTLIVAGCSTSGCIRATAVDAMQHGFRPIVVRE 147 (179)
T ss_pred CCEEEecCc---cCCccC---CcHHHHH---HHcCCCEEEEeeecccHhHHHHHHHHHHCCCeEEEeec
Confidence 445777763 223444 3555555 47899999888776544455888888899999988854
No 121
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=29.03 E-value=1.1e+02 Score=23.83 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=24.7
Q ss_pred hhCCCCeEEE-eCcccchHHHHHHHHHHHhCCeEEEEec
Q 020509 137 EDHIVTDLVT-CGGCQSAHATAVAVSCAERGLKSHLLLR 174 (325)
Q Consensus 137 ~~~G~~~LVT-~GG~QSNH~~AtAaaAa~lGLkcvlvlr 174 (325)
...+...||| .||.. .| +|.+|+.+|+++++-+.
T Consensus 27 ~~~~~~Giv~~~Gg~~-SH---~aIlAr~~giP~ivg~~ 61 (80)
T PF00391_consen 27 DLQRVAGIVTEEGGPT-SH---AAILARELGIPAIVGVG 61 (80)
T ss_dssp HHTTSSEEEESSSSTT-SH---HHHHHHHTT-EEEESTT
T ss_pred chhheEEEEEEcCCcc-ch---HHHHHHHcCCCEEEeec
Confidence 4567889999 56665 45 47789999999988764
No 122
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=28.79 E-value=86 Score=30.96 Aligned_cols=39 Identities=13% Similarity=0.120 Sum_probs=32.1
Q ss_pred hhCCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecc
Q 020509 137 EDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (325)
Q Consensus 137 ~~~G~~~LVT~GG~QSNH~~AtAaaAa~lGLkcvlvlrg 175 (325)
++..+|.+|-.||-.|+..+-++.+|++.|.+++.+-..
T Consensus 207 La~~vD~miVVGg~~SsNT~kL~~i~~~~~~~t~~Ie~~ 245 (298)
T PRK01045 207 LAPQADLVIVVGSKNSSNSNRLREVAEEAGAPAYLIDDA 245 (298)
T ss_pred HHhhCCEEEEECCCCCccHHHHHHHHHHHCCCEEEECCh
Confidence 455689999999999999999999999999887766433
No 123
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=28.43 E-value=70 Score=31.33 Aligned_cols=40 Identities=13% Similarity=0.232 Sum_probs=32.7
Q ss_pred hhCCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEeccc
Q 020509 137 EDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (325)
Q Consensus 137 ~~~G~~~LVT~GG~QSNH~~AtAaaAa~lGLkcvlvlrge 176 (325)
++..+|.+|-.||-.|+..+-++.+|++.|.+++.+-..+
T Consensus 206 La~~vD~miVVGg~~SsNT~rL~eia~~~~~~t~~Ie~~~ 245 (281)
T PRK12360 206 LSKEVDVMIVIGGKHSSNTQKLVKICEKNCPNTFHIETAD 245 (281)
T ss_pred HHHhCCEEEEecCCCCccHHHHHHHHHHHCCCEEEECChH
Confidence 3556899999999999999999999999998777764333
No 124
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=28.10 E-value=1.5e+02 Score=28.45 Aligned_cols=75 Identities=11% Similarity=0.042 Sum_probs=49.2
Q ss_pred EEEEecCCCCCCCCChhHhhHHhhHHHhhhCCCCeEEEeCcccchH-HHHHHHHHHHhCCeEEEEeccccCCccchhhHH
Q 020509 109 FYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAH-ATAVAVSCAERGLKSHLLLRGEQPQILTGYNLI 187 (325)
Q Consensus 109 l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G~~~LVT~GG~QSNH-~~AtAaaAa~lGLkcvlvlrge~~~~~tGN~ll 187 (325)
+=+.|-|.+-- +|.+.+|+..|+|.|+-.-+.-+.. +..+...|..+||.+.+=++.+.. +..
T Consensus 110 ~PvL~KDFIid----------~~QI~eA~~~GADaVLLI~~~L~~~~l~~l~~~a~~lGle~lVEVh~~~E------l~~ 173 (254)
T PF00218_consen 110 LPVLRKDFIID----------PYQIYEARAAGADAVLLIAAILSDDQLEELLELAHSLGLEALVEVHNEEE------LER 173 (254)
T ss_dssp S-EEEES---S----------HHHHHHHHHTT-SEEEEEGGGSGHHHHHHHHHHHHHTT-EEEEEESSHHH------HHH
T ss_pred CCcccccCCCC----------HHHHHHHHHcCCCEeehhHHhCCHHHHHHHHHHHHHcCCCeEEEECCHHH------HHH
Confidence 45556677543 5889999999999987755555555 499999999999999988765431 112
Q ss_pred HHhCC-eEEEECC
Q 020509 188 STIYG-KVTYVPR 199 (325)
Q Consensus 188 ~~LlG-~V~~V~r 199 (325)
..-.| +++-|..
T Consensus 174 al~~~a~iiGINn 186 (254)
T PF00218_consen 174 ALEAGADIIGINN 186 (254)
T ss_dssp HHHTT-SEEEEES
T ss_pred HHHcCCCEEEEeC
Confidence 23457 7777754
No 125
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=27.92 E-value=1.2e+02 Score=25.34 Aligned_cols=74 Identities=20% Similarity=0.208 Sum_probs=46.7
Q ss_pred hhHHhhHHHhhhCCCCeEEEeCcccch----HHHHHHHHHHHhCCeEEEEeccccCCccchhhHH----HHhCC--eEEE
Q 020509 127 RKMDALLPLLEDHIVTDLVTCGGCQSA----HATAVAVSCAERGLKSHLLLRGEQPQILTGYNLI----STIYG--KVTY 196 (325)
Q Consensus 127 RKLeylL~dA~~~G~~~LVT~GG~QSN----H~~AtAaaAa~lGLkcvlvlrge~~~~~tGN~ll----~~LlG--~V~~ 196 (325)
..++..+..+++..++.||.+||...+ .....+..+.+.|++..-++-.........|... +.-.| +|..
T Consensus 21 ~R~~~a~~l~~~~~~~~ii~sGg~~~~~~~~ea~~m~~~l~~~gv~~~~I~~e~~s~~T~ena~~~~~~~~~~~~~~i~l 100 (150)
T cd06259 21 ERLDAAAELYRAGPAPKLIVSGGQGPGEGYSEAEAMARYLIELGVPAEAILLEDRSTNTYENARFSAELLRERGIRSVLL 100 (150)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHcCCCHHHeeecCCCCCHHHHHHHHHHHHHhcCCCeEEE
Confidence 566777766666668899999987654 7778888888888765333332222233356543 22335 6777
Q ss_pred ECCC
Q 020509 197 VPRT 200 (325)
Q Consensus 197 V~r~ 200 (325)
|...
T Consensus 101 VTs~ 104 (150)
T cd06259 101 VTSA 104 (150)
T ss_pred ECCH
Confidence 7664
No 126
>KOG3456 consensus NADH:ubiquinone oxidoreductase, NDUFS6/13 kDa subunit [Energy production and conversion]
Probab=27.62 E-value=80 Score=27.40 Aligned_cols=39 Identities=21% Similarity=0.223 Sum_probs=26.0
Q ss_pred hccCCcEEEEeCCCcchhhhhhhcccccccccccceEEeeecc
Q 020509 254 DNCRKKVLIVNEGAGDAVALLVLIPGSFTWKKKGYKICCGCWY 296 (325)
Q Consensus 254 ~~~g~~~y~ip~GGSnaiG~lGyi~~~~e~~~~~~~~~~~~~~ 296 (325)
.+--.++++|-||+ ++||-=-.-.-|.++|--+|--||.
T Consensus 74 ~e~d~RVV~CdGg~----~aLGHPkvyInLDk~~~~~CgYCGl 112 (120)
T KOG3456|consen 74 IEVDGRVVACDGGT----PALGHPKVYINLDKPGPHICGYCGL 112 (120)
T ss_pred hhccceEEEecCCC----CCCCCCeEEEEcCCCCCcccccchh
Confidence 44466889998777 5566333334567888888877774
No 127
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=27.29 E-value=1.6e+02 Score=28.11 Aligned_cols=45 Identities=16% Similarity=0.158 Sum_probs=30.7
Q ss_pred HhhHHHhhhCCCCeEEE--eCcccchHHHHHHHHHHHhCCeEEEEeccc
Q 020509 130 DALLPLLEDHIVTDLVT--CGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (325)
Q Consensus 130 eylL~dA~~~G~~~LVT--~GG~QSNH~~AtAaaAa~lGLkcvlvlrge 176 (325)
+...+..++.+++.||| .|+.. =...=-.+|+++|++++++-|..
T Consensus 187 e~n~al~~~~~i~~lVtK~SG~~G--g~~eKi~AA~~lgi~vivI~RP~ 233 (256)
T TIGR00715 187 ELEKALLREYRIDAVVTKASGEQG--GELEKVKAAEALGINVIRIARPQ 233 (256)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCcc--chHHHHHHHHHcCCcEEEEeCCC
Confidence 33344456889999999 55542 23344478899999998887754
No 128
>cd00431 cysteine_hydrolases Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.
Probab=26.89 E-value=3.8e+02 Score=22.39 Aligned_cols=59 Identities=19% Similarity=0.234 Sum_probs=37.4
Q ss_pred CeEEEEecCCCCCCCCChhHhhHHhhHHHhhhCCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEec
Q 020509 107 RCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLR 174 (325)
Q Consensus 107 ~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G~~~LVT~GG~QSNH~~AtAaaAa~lGLkcvlvlr 174 (325)
..+..|. ....+.++ .|+..| +..|.++||-+|-.-..=+.+||.-+...|.+.+++..
T Consensus 85 ~~~i~K~---~~saf~~t---~l~~~L---~~~~i~~vil~G~~t~~CV~~T~~~a~~~G~~v~vi~D 143 (161)
T cd00431 85 DLVIEKT---RYSAFYGT---DLDELL---RERGIDTLVVCGIATDICVLATARDALDLGYRVIVVED 143 (161)
T ss_pred CEEEecC---CcCCccCC---CHHHHH---HHCCCCEEEEEecCcChhHHHHHHHHHHCCCEEEEehh
Confidence 3455664 22334443 344444 46689999888776544456667777789999888853
No 129
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=26.68 E-value=1.7e+02 Score=25.07 Aligned_cols=59 Identities=10% Similarity=0.034 Sum_probs=38.5
Q ss_pred eEEEEecCCCCCCCCChhHhhHHhhHHHhhhCCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecc
Q 020509 108 CFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (325)
Q Consensus 108 ~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G~~~LVT~GG~QSNH~~AtAaaAa~lGLkcvlvlrg 175 (325)
.++-|+- ...+.+. .|+..| ++.|.++||-+|-.-..=..+||.-|..+|++++++-..
T Consensus 64 ~vi~K~~---~saf~~t---~L~~~L---~~~gi~~lii~G~~T~~CV~~Ta~~a~~~g~~v~v~~Da 122 (157)
T cd01012 64 PVIEKTS---FSCWEDE---AFRKAL---KATGRKQVVLAGLETHVCVLQTALDLLEEGYEVFVVADA 122 (157)
T ss_pred Cceeccc---ccCcCCH---HHHHHH---HhcCCCEEEEEEeeccHHHHHHHHHHHHCCCEEEEEeeC
Confidence 4666654 2233332 455555 467999999888775444567777788899998888643
No 130
>PRK02769 histidine decarboxylase; Provisional
Probab=25.85 E-value=5.3e+02 Score=25.76 Aligned_cols=103 Identities=12% Similarity=0.045 Sum_probs=53.5
Q ss_pred ChhHhhHHhhHHH--hhhCCC---C--eEEEeCcccchHHHHHHHHHHHhCCeEEEEeccccCCccchhhHHHHhCC-eE
Q 020509 123 GNKARKMDALLPL--LEDHIV---T--DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYG-KV 194 (325)
Q Consensus 123 GNK~RKLeylL~d--A~~~G~---~--~LVT~GG~QSNH~~AtAaaAa~lGLkcvlvlrge~~~~~tGN~ll~~LlG-~V 194 (325)
|.+++++|.-+.+ |.-.|+ + .++|.||..||..... +++.+.-..++++... .+.-+....+.+| ++
T Consensus 60 g~~~~~~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~--~ar~~~~~~~ii~s~~---~H~Sv~ka~~~lg~~~ 134 (380)
T PRK02769 60 PLNSFDFERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCY--LARELFPDGTLYYSKD---THYSVSKIARLLRIKS 134 (380)
T ss_pred CCChHHHHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHH--HHHHhCCCcEEEeCCC---ceehHHHHHHHcCCCC
Confidence 3357777755543 222333 2 3788999999973322 2233322345555432 2333444556778 65
Q ss_pred EEECCC-Ccc-chHHHHHHHHHH---h------cccc--cchhhHHHHH
Q 020509 195 TYVPRT-HYA-HRIEMLKSYANL---V------AGNN--GDVVWCNEIF 230 (325)
Q Consensus 195 ~~V~r~-~y~-~kda~~e~~~~~---~------~Gas--G~vr~~~eI~ 230 (325)
..|+.. +++ ..+++.+.+.+. . .|+. |.+....+|.
T Consensus 135 ~~V~~~~~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idpi~~I~ 183 (380)
T PRK02769 135 RVITSLPNGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAIDNIKEIQ 183 (380)
T ss_pred ceeccCCCCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCCHHHHH
Confidence 555432 222 445566655442 1 4444 7777777764
No 131
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=25.58 E-value=1e+02 Score=29.40 Aligned_cols=56 Identities=21% Similarity=0.262 Sum_probs=38.6
Q ss_pred EEEEecCCCCCCCCChhHhhHHhhHHHhhhCCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEE
Q 020509 109 FYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLL 172 (325)
Q Consensus 109 l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G~~~LVT~GG~QSNH~~AtAaaAa~lGLkcvlv 172 (325)
-++.+||...+.-+.+-+||| +.+.+.+-| +|+..|+...|++.++.+.|+..+.-
T Consensus 44 ~lv~~D~~~~p~~a~~~a~~l------i~~d~v~~i--iG~~~s~~~~a~~~~~~~~~ip~i~~ 99 (357)
T cd06337 44 EIIVRDSQSNPNRAGLVAQEL------ILTDKVDLL--LAGGTPDTTNPVSDQCEANGVPCIST 99 (357)
T ss_pred EEEEecCCCCHHHHHHHHHHH------HhccCccEE--EecCCcchhhHHHHHHHHhCCCeEEe
Confidence 346788887776555555553 122355555 46777999999999999999987763
No 132
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=25.51 E-value=5.5e+02 Score=23.88 Aligned_cols=72 Identities=19% Similarity=0.138 Sum_probs=37.5
Q ss_pred HhhHHhhHHHhh--hCCC-----CeEEEeCcccchHHHHHHHHHHHhC----------CeEEEEeccccCCccchhhHHH
Q 020509 126 ARKMDALLPLLE--DHIV-----TDLVTCGGCQSAHATAVAVSCAERG----------LKSHLLLRGEQPQILTGYNLIS 188 (325)
Q Consensus 126 ~RKLeylL~dA~--~~G~-----~~LVT~GG~QSNH~~AtAaaAa~lG----------Lkcvlvlrge~~~~~tGN~ll~ 188 (325)
...+|..+.+-. ..|. ..++|.||.++|.....++..+..+ =+.++++... ....+....
T Consensus 36 ~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~h~~~~~~~ 112 (345)
T cd06450 36 ATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQ---AHVSVEKAA 112 (345)
T ss_pred hHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCc---chhHHHHHH
Confidence 555665554322 2243 4778899999988665554332211 1234444321 122233344
Q ss_pred HhCC-eEEEECCC
Q 020509 189 TIYG-KVTYVPRT 200 (325)
Q Consensus 189 ~LlG-~V~~V~r~ 200 (325)
+++| +++.++.+
T Consensus 113 ~~~g~~~~~v~~~ 125 (345)
T cd06450 113 AYLDVKVRLVPVD 125 (345)
T ss_pred HHHhcCeEEeeeC
Confidence 5668 88888643
No 133
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=25.48 E-value=4.9e+02 Score=26.14 Aligned_cols=46 Identities=9% Similarity=0.065 Sum_probs=31.2
Q ss_pred hccCCcEEEEeCCCcchhhhhhhcccccccccccceEEeeeccccC
Q 020509 254 DNCRKKVLIVNEGAGDAVALLVLIPGSFTWKKKGYKICCGCWYWDN 299 (325)
Q Consensus 254 ~~~g~~~y~ip~GGSnaiG~lGyi~~~~e~~~~~~~~~~~~~~~~~ 299 (325)
.+....|++|-+||.+.--.+-.++.+.+--+.+--++||=-.|..
T Consensus 237 ~~a~~~P~vvlsgG~~~~~f~~~l~~A~~aGa~f~Gvl~GRniwq~ 282 (340)
T PRK12858 237 SDATDLPFIFLSAGVSPELFRRTLEFACEAGADFSGVLCGRATWQD 282 (340)
T ss_pred HhhCCCCEEEECCCCCHHHHHHHHHHHHHcCCCccchhhhHHHHhh
Confidence 3445678888888887766777777777744544567777666644
No 134
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=25.22 E-value=1.5e+02 Score=29.34 Aligned_cols=47 Identities=9% Similarity=0.027 Sum_probs=32.4
Q ss_pred hHhhHHhhHHHh----hhCCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEe
Q 020509 125 KARKMDALLPLL----EDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLL 173 (325)
Q Consensus 125 K~RKLeylL~dA----~~~G~~~LVT~GG~QSNH~~AtAaaAa~lGLkcvlvl 173 (325)
+.+|+-..+.++ ++...|.||++|+.--|-. +|.+|+.+|+++++++
T Consensus 70 ~~~~~~~~~~~~~~~l~~~kPd~vi~~g~~~~~~~--~a~aa~~~gip~v~~i 120 (385)
T TIGR00215 70 RLGRLLKIRKEVVQLAKQAKPDLLVGIDAPDFNLT--KELKKKDPGIKIIYYI 120 (385)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCccHH--HHHHHhhCCCCEEEEe
Confidence 344444444443 5677899999998543543 5667789999999886
No 135
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=25.09 E-value=1.2e+02 Score=31.13 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=33.2
Q ss_pred CCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecccc
Q 020509 139 HIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (325)
Q Consensus 139 ~G~~~LVT~GG~QSNH~~AtAaaAa~lGLkcvlvlrge~ 177 (325)
..+|.+|..||..|+..+-++.+|+..|.+++.+-..++
T Consensus 287 ~~vD~miVVGG~nSSNT~rL~eia~~~g~~ty~Ie~~~e 325 (387)
T PRK13371 287 EPLDLMVVIGGYNSSNTTHLQEIAIERGIPSYHIDSPER 325 (387)
T ss_pred cCCCEEEEECCCCCccHHHHHHHHHhcCCCEEEECCHHH
Confidence 469999999999999999999999999988777644433
No 136
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=24.94 E-value=1.8e+02 Score=26.01 Aligned_cols=44 Identities=14% Similarity=0.209 Sum_probs=31.5
Q ss_pred hhHHhhHHHhhhCCCCeEEEeCcccchHHH-HHHHHHHHhCCeEEEEec
Q 020509 127 RKMDALLPLLEDHIVTDLVTCGGCQSAHAT-AVAVSCAERGLKSHLLLR 174 (325)
Q Consensus 127 RKLeylL~dA~~~G~~~LVT~GG~QSNH~~-AtAaaAa~lGLkcvlvlr 174 (325)
-+|+..| ++.|.++||-+|-. +|+|+ +||.-|...|++++++..
T Consensus 127 t~L~~~L---~~~~i~~lii~G~~-t~~CV~~T~~~a~~~g~~v~v~~D 171 (196)
T cd01011 127 TGLAEYL---RERGIDRVDVVGLA-TDYCVKATALDALKAGFEVRVLED 171 (196)
T ss_pred hhHHHHH---HHCCCCEEEEEEec-ccHHHHHHHHHHHHCCCEEEEecc
Confidence 3555555 45799999988766 66655 566777788998888754
No 137
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=24.69 E-value=2e+02 Score=28.06 Aligned_cols=46 Identities=13% Similarity=0.094 Sum_probs=31.1
Q ss_pred HhhHHhhHHHhhhCCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEe
Q 020509 126 ARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLL 173 (325)
Q Consensus 126 ~RKLeylL~dA~~~G~~~LVT~GG~QSNH~~AtAaaAa~lGLkcvlvl 173 (325)
...++..+..+++.++|.||..||+-..- .| =++|...+++.+.|-
T Consensus 63 ~~~v~~~~~~~~~~~~d~IIavGGGs~~D-~a-K~ia~~~~~p~i~VP 108 (349)
T cd08550 63 TEEVVKALCGAEEQEADVIIGVGGGKTLD-TA-KAVADRLDKPIVIVP 108 (349)
T ss_pred HHHHHHHHHHHHhcCCCEEEEecCcHHHH-HH-HHHHHHcCCCEEEeC
Confidence 45666777778888999999999985222 22 123345688877764
No 138
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=24.39 E-value=1.1e+02 Score=30.08 Aligned_cols=32 Identities=25% Similarity=0.256 Sum_probs=26.9
Q ss_pred CeEEEeCcccchHHHHHHHHHHHhCCeEEEEecc
Q 020509 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (325)
Q Consensus 142 ~~LVT~GG~QSNH~~AtAaaAa~lGLkcvlvlrg 175 (325)
++|.-.||+| .++.++.+|+++|++++++-..
T Consensus 3 ~~igilG~Gq--l~~ml~~aa~~lG~~v~~~d~~ 34 (372)
T PRK06019 3 KTIGIIGGGQ--LGRMLALAAAPLGYKVIVLDPD 34 (372)
T ss_pred CEEEEECCCH--HHHHHHHHHHHcCCEEEEEeCC
Confidence 3577789999 9999999999999998888543
No 139
>COG1335 PncA Amidases related to nicotinamidase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.36 E-value=1.9e+02 Score=25.39 Aligned_cols=42 Identities=17% Similarity=0.295 Sum_probs=29.6
Q ss_pred HHhhHHHhhhCCCCeEEEeCcccchHHHHHH-HHHHHhCCeEEEEec
Q 020509 129 MDALLPLLEDHIVTDLVTCGGCQSAHATAVA-VSCAERGLKSHLLLR 174 (325)
Q Consensus 129 LeylL~dA~~~G~~~LVT~GG~QSNH~~AtA-aaAa~lGLkcvlvlr 174 (325)
|+..|. .+|.++|+-+|.. +++|+-.+ .-|..+|.+++++..
T Consensus 124 L~~~Lr---~~~i~~l~v~G~~-td~CV~~T~~~A~~~gy~v~v~~d 166 (205)
T COG1335 124 LDDILR---NLGIDTVVVCGIA-TDICVLATARDAFDLGYQVTLVED 166 (205)
T ss_pred HHHHHH---HCCCCEEEEeeee-hhHHHHHHHHHHHHCCCeEEEehh
Confidence 555554 4799999988766 77776554 455569999888853
No 140
>PLN02618 tryptophan synthase, beta chain
Probab=24.03 E-value=90 Score=32.00 Aligned_cols=86 Identities=15% Similarity=0.186 Sum_probs=49.1
Q ss_pred ccCCCCcCccCCCCccCCCCeEEEEecCCCCCCCCChhHhhHHhhHHHhhhCCCCeEEEeCcccchHHHHHHHHHHHhCC
Q 020509 88 FLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGL 167 (325)
Q Consensus 88 ~l~~~tp~l~~~~Ls~~~G~~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G~~~LVT~GG~QSNH~~AtAaaAa~lGL 167 (325)
|+.|+||++.+++|++.+|.. ...|.|=+-|+|++.+ +|+-=-|.+..-+..|.+.|-
T Consensus 62 ~vGr~TPL~~~~~Ls~~~g~~----------~~~g~~IylK~E~lnp------------tGS~K~R~a~~~~l~A~~~g~ 119 (410)
T PLN02618 62 YVGRETPLYFAERLTEHYKRA----------DGEGPEIYLKREDLNH------------TGAHKINNAVAQALLAKRLGK 119 (410)
T ss_pred hcCCCCceeEhhhHHHHhccc----------cCCCCEEEEEeCCCCC------------ccchHHHHHHHHHHHHHHcCC
Confidence 455788888887776655430 1112222446666543 466666667777777888885
Q ss_pred eEEEEeccccCCccchhh-----HHHHhCC-e-EEEECCCC
Q 020509 168 KSHLLLRGEQPQILTGYN-----LISTIYG-K-VTYVPRTH 201 (325)
Q Consensus 168 kcvlvlrge~~~~~tGN~-----ll~~LlG-~-V~~V~r~~ 201 (325)
+.++.-. -.||. .....+| + +++++..+
T Consensus 120 ~~vIaes------gaGNhG~AlA~aaa~~Gl~~~I~m~~~~ 154 (410)
T PLN02618 120 KRIIAET------GAGQHGVATATVCARFGLECIVYMGAQD 154 (410)
T ss_pred CEEEEEc------CcHHHHHHHHHHHHHcCCcEEEEEcCCc
Confidence 5444321 13442 2357789 5 56666643
No 141
>PRK11609 nicotinamidase/pyrazinamidase; Provisional
Probab=23.88 E-value=1.9e+02 Score=25.94 Aligned_cols=45 Identities=16% Similarity=0.269 Sum_probs=33.6
Q ss_pred hhHHhhHHHhhhCCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEec
Q 020509 127 RKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLR 174 (325)
Q Consensus 127 RKLeylL~dA~~~G~~~LVT~GG~QSNH~~AtAaaAa~lGLkcvlvlr 174 (325)
-.|+.+|. +.|.++||-+|-.-..=+.+||.-|..+|.+++++-.
T Consensus 131 T~L~~~L~---~~gi~~lii~G~~T~~CV~~Ta~dA~~~gy~v~v~~D 175 (212)
T PRK11609 131 TALDDWLR---EHGITELIVMGLATDYCVKFTVLDALALGYQVNVITD 175 (212)
T ss_pred ccHHHHHH---HcCCCEEEEEEeccCHHHHHHHHHHHHCCCEEEEEee
Confidence 45776664 6799999888776544456778888899999988864
No 142
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=23.77 E-value=5.3e+02 Score=25.66 Aligned_cols=74 Identities=22% Similarity=0.074 Sum_probs=50.3
Q ss_pred hhHhhHHhhHHHhhhCCCCeEEEeC------cccchHHHHHHHHHHHhCCeEEEEeccccCCccch---hhHHHHhCC-e
Q 020509 124 NKARKMDALLPLLEDHIVTDLVTCG------GCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTG---YNLISTIYG-K 193 (325)
Q Consensus 124 NK~RKLeylL~dA~~~G~~~LVT~G------G~QSNH~~AtAaaAa~lGLkcvlvlrge~~~~~tG---N~ll~~LlG-~ 193 (325)
....+++.++.+|+++|+..+-++. ..-..++..+..+++++|....+..+.+....... -..+.+..| +
T Consensus 164 ~~~~~~~~l~~~al~~Ga~g~~~~~~y~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~e~~av~~~~~~a~~~g~r 243 (415)
T cd01297 164 EELAKMRELLREALEAGALGISTGLAYAPRLYAGTAELVALARVAARYGGVYQTHVRYEGDSILEALDELLRLGRETGRP 243 (415)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEcccccCCcccCCHHHHHHHHHHHHHcCCEEEEEECcccccHHHHHHHHHHHHHHhCCC
Confidence 3478889999999999998866543 23455788899999999998888877653222211 122344557 6
Q ss_pred EEEE
Q 020509 194 VTYV 197 (325)
Q Consensus 194 V~~V 197 (325)
++++
T Consensus 244 ~~i~ 247 (415)
T cd01297 244 VHIS 247 (415)
T ss_pred EEEE
Confidence 6664
No 143
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=23.58 E-value=54 Score=30.45 Aligned_cols=43 Identities=12% Similarity=0.020 Sum_probs=29.6
Q ss_pred hhccCCcEEEEeCCCc---chh-hhhhhcccccccccccceEEeeec
Q 020509 253 IDNCRKKVLIVNEGAG---DAV-ALLVLIPGSFTWKKKGYKICCGCW 295 (325)
Q Consensus 253 l~~~g~~~y~ip~GGS---nai-G~lGyi~~~~e~~~~~~~~~~~~~ 295 (325)
...-+-+...|.+|++ +.. =.-.-.+++-+++++|..|||||+
T Consensus 9 ~~~~~~~~i~V~~gs~~~~~~~~~~~~a~~lg~~la~~g~~V~tGG~ 55 (205)
T COG1611 9 LLFIGIRQIVVICGSARGIEPEEYYELARELGRELAKRGLLVITGGG 55 (205)
T ss_pred hcccCcceEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEeCCc
Confidence 3344566777888888 344 223335677778899999999997
No 144
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=23.47 E-value=1.8e+02 Score=27.85 Aligned_cols=48 Identities=13% Similarity=0.202 Sum_probs=31.8
Q ss_pred HhhHHhhHHHhhhCCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEe
Q 020509 126 ARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLL 173 (325)
Q Consensus 126 ~RKLeylL~dA~~~G~~~LVT~GG~QSNH~~AtAaaAa~lGLkcvlvl 173 (325)
..-++..+..+++.++|.||..||+-..-+.=.+++....|++.+.+-
T Consensus 64 ~~~v~~~~~~~~~~~~d~IIaiGGGs~~D~aK~ia~~~~~~~p~i~iP 111 (332)
T cd07766 64 FEEVKEAVERARAAEVDAVIAVGGGSTLDTAKAVAALLNRGLPIIIVP 111 (332)
T ss_pred HHHHHHHHHHHHhcCcCEEEEeCCchHHHHHHHHHHHhcCCCCEEEEe
Confidence 444666777778889999999999864444333333332388877774
No 145
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=23.30 E-value=1.1e+02 Score=31.43 Aligned_cols=31 Identities=26% Similarity=0.286 Sum_probs=26.4
Q ss_pred eEEEeCcccchHHHHHHHHHHHhCCeEEEEecc
Q 020509 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (325)
Q Consensus 143 ~LVT~GG~QSNH~~AtAaaAa~lGLkcvlvlrg 175 (325)
+|--.||+| -++.+|.+|+++|++++++=..
T Consensus 3 tvgIlGGGQ--LgrMm~~aa~~lG~~v~vLdp~ 33 (375)
T COG0026 3 TVGILGGGQ--LGRMMALAAARLGIKVIVLDPD 33 (375)
T ss_pred eEEEEcCcH--HHHHHHHHHHhcCCEEEEecCC
Confidence 555689999 9999999999999998887533
No 146
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=23.14 E-value=1.8e+02 Score=28.18 Aligned_cols=46 Identities=11% Similarity=0.084 Sum_probs=32.2
Q ss_pred HhhHHhhHHHhhhCCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEe
Q 020509 126 ARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLL 173 (325)
Q Consensus 126 ~RKLeylL~dA~~~G~~~LVT~GG~QSNH~~AtAaaAa~lGLkcvlvl 173 (325)
.--++..+..+++.++|.||..||+-..-+ .-++|...|++.+.+-
T Consensus 64 ~~~v~~~~~~~~~~~~d~iIaiGGGs~~D~--aK~~a~~~~~p~i~iP 109 (339)
T cd08173 64 YEEVEKVESSARDIGADFVIGVGGGRVIDV--AKVAAYKLGIPFISVP 109 (339)
T ss_pred HHHHHHHHHHhhhcCCCEEEEeCCchHHHH--HHHHHHhcCCCEEEec
Confidence 456666777777889999999999863333 2333466788877764
No 147
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=22.60 E-value=3.9e+02 Score=24.18 Aligned_cols=56 Identities=16% Similarity=0.103 Sum_probs=43.7
Q ss_pred eEEEEecCCCCCCCCChhHhhHHhhHHHhhhCCCCeEEE-eCcccchHHHHHHHHHHHhCCe
Q 020509 108 CFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVT-CGGCQSAHATAVAVSCAERGLK 168 (325)
Q Consensus 108 ~l~IKRDDL~h~~lgGNK~RKLeylL~dA~~~G~~~LVT-~GG~QSNH~~AtAaaAa~lGLk 168 (325)
...|+|-|=+.+ +- .|=|.+.+-... .+++.+|- .|.-|..|...+-++++.+|.+
T Consensus 130 d~vl~rsdG~~~-Y~---~~DlA~~~~~~~-~~~~~~i~v~g~~~~~~~~~~~~~~~~lg~~ 186 (212)
T cd00671 130 DRVLVRSDGTYT-YF---TRDIAYHLDKFE-RGADKIIYVVGADHHGHFKRLFAALELLGYD 186 (212)
T ss_pred CeEEEECCCCcc-ch---HHHHHHHHHHHh-cCCCEEEEEECCCHHHHHHHHHHHHHHcCCC
Confidence 456666665543 11 577888887766 78999887 8999999999999999999975
No 148
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=22.60 E-value=1.6e+02 Score=28.75 Aligned_cols=40 Identities=25% Similarity=0.299 Sum_probs=28.5
Q ss_pred HHhhhCCCCeEEE--eCcccchHHHHHHHHHHHhCCeEEEEecc
Q 020509 134 PLLEDHIVTDLVT--CGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (325)
Q Consensus 134 ~dA~~~G~~~LVT--~GG~QSNH~~AtAaaAa~lGLkcvlvlrg 175 (325)
+...+..+|.||| .|+.. -..+=..+|+++|++++.+-|.
T Consensus 190 all~q~~id~vItK~SG~~G--g~~~Ki~aA~eLgi~VI~I~Rp 231 (257)
T COG2099 190 ALLEQYRIDVVVTKNSGGAG--GTYEKIEAARELGIPVIMIERP 231 (257)
T ss_pred HHHHHhCCCEEEEccCCccc--CcHHHHHHHHHcCCcEEEEecC
Confidence 3445778899998 55553 3456677888899998888665
No 149
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=22.56 E-value=1.9e+02 Score=27.92 Aligned_cols=66 Identities=5% Similarity=0.032 Sum_probs=49.3
Q ss_pred HhhHHHhhhCCCCeEEEeCcccch-HHHHHHHHHHHhCCeEEEEeccccCCccchhhHHHHhCC-eEEEECCCC
Q 020509 130 DALLPLLEDHIVTDLVTCGGCQSA-HATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPRTH 201 (325)
Q Consensus 130 eylL~dA~~~G~~~LVT~GG~QSN-H~~AtAaaAa~lGLkcvlvlrge~~~~~tGN~ll~~LlG-~V~~V~r~~ 201 (325)
+|.+.+|...|+|.|+-.-...+. .+..+...|..+||++.+=++.+.. +-...-.| ++.-|..-+
T Consensus 114 ~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGle~LVEVh~~~E------l~~a~~~ga~iiGINnRd 181 (247)
T PRK13957 114 EIQIREARAFGASAILLIVRILTPSQIKSFLKHASSLGMDVLVEVHTEDE------AKLALDCGAEIIGINTRD 181 (247)
T ss_pred HHHHHHHHHcCCCEEEeEHhhCCHHHHHHHHHHHHHcCCceEEEECCHHH------HHHHHhCCCCEEEEeCCC
Confidence 588999999999999887777666 6999999999999999988765431 11223357 777775443
No 150
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=22.17 E-value=1.2e+02 Score=27.55 Aligned_cols=37 Identities=24% Similarity=0.282 Sum_probs=27.3
Q ss_pred CCCCeEEEeCccc---------chH-----HHHHHHHHHHhCCeEEEEecc
Q 020509 139 HIVTDLVTCGGCQ---------SAH-----ATAVAVSCAERGLKSHLLLRG 175 (325)
Q Consensus 139 ~G~~~LVT~GG~Q---------SNH-----~~AtAaaAa~lGLkcvlvlrg 175 (325)
+|++-|||.|+.+ ||| +.++|..+.+.|-+.+++.+.
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~ 52 (185)
T PF04127_consen 2 KGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGP 52 (185)
T ss_dssp TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-T
T ss_pred CCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecC
Confidence 4677788888865 565 889999999999999988765
No 151
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=22.11 E-value=1.5e+02 Score=26.91 Aligned_cols=43 Identities=9% Similarity=-0.157 Sum_probs=32.8
Q ss_pred CcEEEEeCCCcchhhhhhhcccccccc----c-ccceEEeeeccccCce
Q 020509 258 KKVLIVNEGAGDAVALLVLIPGSFTWK----K-KGYKICCGCWYWDNSC 301 (325)
Q Consensus 258 ~~~y~ip~GGSnaiG~lGyi~~~~e~~----~-~~~~~~~~~~~~~~~~ 301 (325)
...|.++.+ .|+....|+...++|+. . .-|.+++.+|...+..
T Consensus 121 ~~~~~~~~~-~n~~~~~g~~~~~~Ei~~q~~~~~~d~ivvp~GtGg~~~ 168 (244)
T cd00640 121 PGAYYVNQF-DNPANIAGQGTIGLEILEQLGGQKPDAVVVPVGGGGNIA 168 (244)
T ss_pred CCCEecCCC-CCHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCccHHHH
Confidence 446777765 89999999999999866 3 3678888888766543
No 152
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=21.85 E-value=1.3e+02 Score=28.38 Aligned_cols=32 Identities=13% Similarity=0.031 Sum_probs=28.4
Q ss_pred CCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEe
Q 020509 140 IVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLL 173 (325)
Q Consensus 140 G~~~LVT~GG~QSNH~~AtAaaAa~lGLkcvlvl 173 (325)
-..+|+-||+.+ =+.++|.+|+.+|++++++=
T Consensus 99 p~~~L~IfGaG~--va~~la~la~~lGf~V~v~D 130 (246)
T TIGR02964 99 PAPHVVLFGAGH--VGRALVRALAPLPCRVTWVD 130 (246)
T ss_pred CCCEEEEECCcH--HHHHHHHHHhcCCCEEEEEe
Confidence 457899999997 79999999999999999864
No 153
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=21.70 E-value=82 Score=33.16 Aligned_cols=46 Identities=30% Similarity=0.491 Sum_probs=28.1
Q ss_pred cccccCCCcchhhHHHHHHhhhhhcccCCCCCCCCcccccccChHHHHHHHhhccccccCCCCcc
Q 020509 2 KVQRLPNSKTKMAFAAIIMKKAFHSASGQLSNSPQGICNVRMSGEELLSRLLDRKWALTSPDSKI 66 (325)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~lp~p~~~I 66 (325)
||..+-..-.-+...-+-|+++|+|++-| =+.|+||. +||.|.+.|
T Consensus 79 kVtqLDs~~eevsLqdinmrKAFkSStvq------------------DQqifdR~-tlP~pl~et 124 (518)
T KOG1830|consen 79 KVTQLDSTVEEVSLQDINMRKAFKSSTVQ------------------DQQIFDRN-TLPTPLTET 124 (518)
T ss_pred hhhccCCcccccccchhHHHhhhhhhhhh------------------hhhhhccc-cCCchHHHH
Confidence 34333333334556778899999999822 13445553 678887754
No 154
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=21.37 E-value=1.8e+02 Score=29.49 Aligned_cols=47 Identities=19% Similarity=0.132 Sum_probs=36.3
Q ss_pred hhHHHhhhCCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEeccccCC
Q 020509 131 ALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQ 179 (325)
Q Consensus 131 ylL~dA~~~G~~~LVT~GG~QSNH~~AtAaaAa~lGLkcvlvlrge~~~ 179 (325)
-.+...++.|.+.||..||=.||+..+ .++.+.+++|+.+-..-|.+
T Consensus 85 ~~~~~l~~~gId~LvvIGGDgS~~gA~--~Lae~~~i~vVGvPkTIDND 131 (347)
T COG0205 85 VAAENLKKLGIDALVVIGGDGSYTGAA--LLAEEGGIPVVGVPKTIDND 131 (347)
T ss_pred HHHHHHHHcCCCEEEEECCCChHHHHH--HHHHhcCCcEEecCCCccCC
Confidence 445556899999999999999998654 46667779999997665543
No 155
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=21.04 E-value=6.9e+02 Score=24.59 Aligned_cols=73 Identities=14% Similarity=0.113 Sum_probs=43.6
Q ss_pred HhhHHhhHHHhhhCC---CCeEEE-eCcccchHHHHHHHHHHHhCCeEEEEeccccCCccch--hhHH-HHhCC-eEEEE
Q 020509 126 ARKMDALLPLLEDHI---VTDLVT-CGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTG--YNLI-STIYG-KVTYV 197 (325)
Q Consensus 126 ~RKLeylL~dA~~~G---~~~LVT-~GG~QSNH~~AtAaaAa~lGLkcvlvlrge~~~~~tG--N~ll-~~LlG-~V~~V 197 (325)
-.+|+.++...+..+ .|.||. .||.-|--+ ++.+..++|+++.++.-........+ |+.. .+.+| +.+.+
T Consensus 42 ~~~l~~l~~~~k~~~~~~yD~iV~lSGGkDSs~l--a~ll~~~~gl~~l~vt~~~~~~~e~~~~n~~~~~~~lgvd~~~i 119 (343)
T TIGR03573 42 EKELEELVDKIKKKGGGRYDCIIGVSGGKDSTYQ--AHVLKKKLGLNPLLVTVDPGWNTELGVKNLNNLIKKLGFDLHTI 119 (343)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEECCCCHHHHHH--HHHHHHHhCCceEEEEECCCCCCHHHHHHHHHHHHHcCCCeEEE
Confidence 346888888876543 578998 799986544 33445678998765543322111222 5433 35589 76665
Q ss_pred CCC
Q 020509 198 PRT 200 (325)
Q Consensus 198 ~r~ 200 (325)
...
T Consensus 120 ~~d 122 (343)
T TIGR03573 120 TIN 122 (343)
T ss_pred eCC
Confidence 443
No 156
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=20.99 E-value=2.7e+02 Score=20.81 Aligned_cols=34 Identities=26% Similarity=0.295 Sum_probs=26.0
Q ss_pred EEEeCcccchHHHHHHHHHHHhCCeEEEEeccccCC
Q 020509 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQ 179 (325)
Q Consensus 144 LVT~GG~QSNH~~AtAaaAa~lGLkcvlvlrge~~~ 179 (325)
++-.||.. =+.-+|...+++|.+++++.+.+.+.
T Consensus 2 vvViGgG~--ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 2 VVVIGGGF--IGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEESSSH--HHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred EEEECcCH--HHHHHHHHHHHhCcEEEEEeccchhh
Confidence 45577777 56677777788999999998876644
No 157
>PLN02743 nicotinamidase
Probab=20.46 E-value=1.8e+02 Score=27.56 Aligned_cols=36 Identities=14% Similarity=0.238 Sum_probs=29.0
Q ss_pred hhCCCCeEEEeCcccchHHH----HHHHHHHHhCC-----eEEEEe
Q 020509 137 EDHIVTDLVTCGGCQSAHAT----AVAVSCAERGL-----KSHLLL 173 (325)
Q Consensus 137 ~~~G~~~LVT~GG~QSNH~~----AtAaaAa~lGL-----kcvlvl 173 (325)
++.|+++||-+| ..+|.|+ +||.-|..+|. +++++-
T Consensus 147 r~~gI~~liv~G-v~T~~CV~~~~sTardA~~~Gy~~~~~~V~Vv~ 191 (239)
T PLN02743 147 NNNKIKVILVVG-ICTDICVLDFVASALSARNHGILPPLEDVVVYS 191 (239)
T ss_pred HHCCCCEEEEEE-eCcchhccChHHHHHHHHHcCCCCCCceEEEeC
Confidence 578999988766 4589999 79999999999 566553
No 158
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=20.25 E-value=1.5e+02 Score=31.90 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=34.7
Q ss_pred hhCCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecccc
Q 020509 137 EDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (325)
Q Consensus 137 ~~~G~~~LVT~GG~QSNH~~AtAaaAa~lGLkcvlvlrge~ 177 (325)
++..+|.+|..||..|+..+-++.+|+..|.+++.+-..++
T Consensus 203 la~~~d~~~vvGg~~SsNt~~L~~i~~~~~~~~~~ie~~~e 243 (647)
T PRK00087 203 LAKKVDVMIVVGGKNSSNTTKLYEICKSNCTNTIHIENAGE 243 (647)
T ss_pred HHhhCCEEEEECCCCCccHHHHHHHHHHHCCCEEEECChHH
Confidence 45679999999999999999999999999988777744433
No 159
>COG1162 Predicted GTPases [General function prediction only]
Probab=20.06 E-value=3.6e+02 Score=26.89 Aligned_cols=81 Identities=14% Similarity=0.069 Sum_probs=48.8
Q ss_pred cchHHHHHHHHHHHhCCeEEEEeccccCCcc--ch-h--hHHHHhCC-eEEEECCCCccchHHHHHHHHH---Hhccccc
Q 020509 151 QSAHATAVAVSCAERGLKSHLLLRGEQPQIL--TG-Y--NLISTIYG-KVTYVPRTHYAHRIEMLKSYAN---LVAGNNG 221 (325)
Q Consensus 151 QSNH~~AtAaaAa~lGLkcvlvlrge~~~~~--tG-N--~ll~~LlG-~V~~V~r~~y~~kda~~e~~~~---~~~GasG 221 (325)
-.|-+-=.-.+|-..|+++++++-.-|.... .. + ....+-+| .+.+++.......+++.+.++. .+.|.||
T Consensus 95 ~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~~~~~l~~~l~~~~svl~GqSG 174 (301)
T COG1162 95 NTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGDGLEELAELLAGKITVLLGQSG 174 (301)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCcccHHHHHHHhcCCeEEEECCCC
Confidence 3444444555677899999999987664321 11 1 12234479 9999986654445555555444 3488887
Q ss_pred ch--hhHHHHHH
Q 020509 222 DV--VWCNEIFE 231 (325)
Q Consensus 222 ~v--r~~~eI~~ 231 (325)
+. -..+.|..
T Consensus 175 VGKSSLiN~L~p 186 (301)
T COG1162 175 VGKSTLINALLP 186 (301)
T ss_pred CcHHHHHHhhCc
Confidence 76 44555553
No 160
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=20.04 E-value=4.1e+02 Score=27.43 Aligned_cols=56 Identities=13% Similarity=0.070 Sum_probs=33.3
Q ss_pred CCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEeccccCCccchhhHHHHhCC-eEEEECC
Q 020509 139 HIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYG-KVTYVPR 199 (325)
Q Consensus 139 ~G~~~LVT~GG~QSNH~~AtAaaAa~lGLkcvlvlrge~~~~~tGN~ll~~LlG-~V~~V~r 199 (325)
.|++.+| +++.. +..+++.+..++||+++.+.-..... ...-.+..+++ .++.++.
T Consensus 323 ~Gk~vaI-~~~~~--~~~~la~~l~ElGm~v~~~~~~~~~~--~~~~~l~~~~~~~~~v~~d 379 (475)
T PRK14478 323 EGKRVLL-YTGGV--KSWSVVKALQELGMEVVGTSVKKSTD--EDKERIKELMGPDAHMIDD 379 (475)
T ss_pred CCCEEEE-EcCCc--hHHHHHHHHHHCCCEEEEEEEECCCH--HHHHHHHHHcCCCcEEEeC
Confidence 4555444 55554 78888888999999998876443211 11122445566 5555554
Done!