Query 020510
Match_columns 325
No_of_seqs 155 out of 1527
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 02:58:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020510.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020510hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02683 pyruvate dehydrogenas 100.0 3.1E-70 6.8E-75 523.1 33.5 301 18-318 7-308 (356)
2 CHL00144 odpB pyruvate dehydro 100.0 1.1E-69 2.4E-74 514.5 31.9 279 35-318 2-281 (327)
3 COG0022 AcoB Pyruvate/2-oxoglu 100.0 7.6E-69 1.6E-73 487.8 26.7 280 36-318 1-280 (324)
4 PRK09212 pyruvate dehydrogenas 100.0 6.2E-68 1.3E-72 503.1 33.0 281 35-319 2-282 (327)
5 COG3958 Transketolase, C-termi 100.0 2.2E-68 4.8E-73 481.6 28.1 264 35-318 5-272 (312)
6 PRK11892 pyruvate dehydrogenas 100.0 8.3E-67 1.8E-71 513.0 33.1 281 34-318 139-420 (464)
7 PTZ00182 3-methyl-2-oxobutanat 100.0 1E-65 2.2E-70 491.8 32.6 283 33-318 31-313 (355)
8 KOG0524 Pyruvate dehydrogenase 100.0 8.4E-62 1.8E-66 432.2 23.1 285 34-318 32-316 (359)
9 PLN02225 1-deoxy-D-xylulose-5- 100.0 9.2E-59 2E-63 469.6 31.9 265 35-318 379-646 (701)
10 COG1154 Dxs Deoxyxylulose-5-ph 100.0 1.5E-56 3.2E-61 438.3 30.3 267 35-320 314-583 (627)
11 TIGR00204 dxs 1-deoxy-D-xylulo 100.0 3.4E-56 7.3E-61 453.8 32.1 264 35-317 308-574 (617)
12 PLN02234 1-deoxy-D-xylulose-5- 100.0 5.9E-56 1.3E-60 448.5 31.1 265 36-320 356-625 (641)
13 PLN02582 1-deoxy-D-xylulose-5- 100.0 6.8E-55 1.5E-59 444.1 31.7 263 36-318 355-622 (677)
14 PRK12315 1-deoxy-D-xylulose-5- 100.0 2.4E-54 5.2E-59 437.8 31.5 261 36-317 277-540 (581)
15 PRK12571 1-deoxy-D-xylulose-5- 100.0 1.4E-53 3E-58 436.0 31.6 263 36-318 318-583 (641)
16 PRK05444 1-deoxy-D-xylulose-5- 100.0 9.8E-53 2.1E-57 427.1 30.2 258 37-318 279-539 (580)
17 KOG0525 Branched chain alpha-k 100.0 7.4E-53 1.6E-57 370.3 16.4 282 35-320 39-322 (362)
18 TIGR00232 tktlase_bact transke 100.0 3.2E-46 7E-51 382.7 26.3 256 29-305 341-609 (653)
19 PRK05899 transketolase; Review 100.0 1.1E-45 2.3E-50 378.6 21.7 246 35-305 317-580 (624)
20 KOG0523 Transketolase [Carbohy 100.0 1.7E-45 3.8E-50 358.6 20.3 265 26-314 309-582 (632)
21 PTZ00089 transketolase; Provis 100.0 4E-45 8.7E-50 375.1 23.8 256 28-303 346-616 (661)
22 PRK12753 transketolase; Review 100.0 1.6E-44 3.5E-49 370.2 28.0 246 33-299 351-614 (663)
23 PLN02790 transketolase 100.0 2.8E-44 6.1E-49 368.5 27.9 259 28-307 335-612 (654)
24 TIGR03186 AKGDH_not_PDH alpha- 100.0 7.8E-44 1.7E-48 367.9 26.2 265 34-316 487-817 (889)
25 PRK09405 aceE pyruvate dehydro 100.0 4.1E-43 9E-48 362.6 27.6 266 34-316 492-820 (891)
26 PRK12754 transketolase; Review 100.0 9.1E-43 2E-47 355.7 25.6 247 34-300 352-615 (663)
27 cd07036 TPP_PYR_E1-PDHc-beta_l 100.0 6.5E-42 1.4E-46 295.2 17.9 166 41-207 1-167 (167)
28 PRK13012 2-oxoacid dehydrogena 100.0 1E-39 2.2E-44 338.7 26.2 254 34-314 500-802 (896)
29 cd07033 TPP_PYR_DXS_TK_like Py 100.0 2.7E-36 5.9E-41 258.0 18.1 153 41-207 1-156 (156)
30 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 2.2E-35 4.8E-40 306.9 27.8 272 35-314 584-889 (929)
31 PRK09404 sucA 2-oxoglutarate d 100.0 2.2E-35 4.9E-40 308.0 27.4 271 35-314 582-883 (924)
32 PF02779 Transket_pyr: Transke 100.0 3.9E-34 8.3E-39 249.8 14.9 166 35-211 1-176 (178)
33 COG0021 TktA Transketolase [Ca 100.0 3.5E-30 7.7E-35 254.3 21.9 263 27-309 344-622 (663)
34 smart00861 Transket_pyr Transk 100.0 6.3E-30 1.4E-34 221.0 16.6 155 38-207 1-166 (168)
35 PRK07119 2-ketoisovalerate fer 99.9 1.8E-20 3.8E-25 179.9 28.6 260 37-314 7-320 (352)
36 PRK08659 2-oxoglutarate ferred 99.9 2.1E-19 4.6E-24 173.8 27.3 260 37-315 7-348 (376)
37 PRK05261 putative phosphoketol 99.8 1E-19 2.2E-24 187.2 20.1 293 2-315 345-698 (785)
38 PRK09627 oorA 2-oxoglutarate-a 99.8 1.2E-18 2.6E-23 168.2 26.1 257 37-315 6-349 (375)
39 TIGR03336 IOR_alpha indolepyru 99.8 7.9E-19 1.7E-23 179.5 25.0 257 37-317 5-304 (595)
40 PRK09622 porA pyruvate flavodo 99.8 2.7E-18 5.9E-23 167.8 27.4 256 37-313 13-342 (407)
41 PF02780 Transketolase_C: Tran 99.8 5.1E-21 1.1E-25 157.3 1.3 90 230-319 1-90 (124)
42 TIGR00759 aceE pyruvate dehydr 99.8 1.6E-18 3.5E-23 178.6 19.8 260 5-282 448-766 (885)
43 PRK08366 vorA 2-ketoisovalerat 99.8 2.3E-16 5.1E-21 153.0 28.1 258 37-315 6-339 (390)
44 TIGR03710 OAFO_sf 2-oxoacid:ac 99.8 8.2E-17 1.8E-21 163.4 26.0 262 36-314 195-538 (562)
45 PRK08367 porA pyruvate ferredo 99.8 4.9E-16 1.1E-20 151.0 28.0 259 37-315 7-341 (394)
46 COG2609 AceE Pyruvate dehydrog 99.6 4.7E-15 1E-19 147.7 17.3 256 5-281 451-768 (887)
47 COG4231 Indolepyruvate ferredo 99.6 3.1E-13 6.7E-18 134.5 22.5 217 84-317 58-321 (640)
48 TIGR02176 pyruv_ox_red pyruvat 99.5 1.9E-11 4.2E-16 132.8 26.9 259 37-315 4-346 (1165)
49 COG0674 PorA Pyruvate:ferredox 99.4 3.8E-10 8.1E-15 109.0 28.0 256 37-310 6-329 (365)
50 PRK13030 2-oxoacid ferredoxin 99.4 7.4E-11 1.6E-15 126.9 21.4 273 26-315 7-354 (1159)
51 COG3957 Phosphoketolase [Carbo 99.3 1E-10 2.2E-15 117.5 17.8 284 1-295 355-693 (793)
52 PRK09193 indolepyruvate ferred 99.3 8.1E-10 1.8E-14 118.8 23.9 273 23-315 12-362 (1165)
53 PRK13029 2-oxoacid ferredoxin 99.2 6.3E-10 1.4E-14 119.4 19.3 279 22-315 14-365 (1186)
54 PRK12270 kgd alpha-ketoglutara 99.2 1.1E-09 2.4E-14 113.8 19.8 259 46-314 896-1186(1228)
55 cd06586 TPP_enzyme_PYR Pyrimid 99.2 2.5E-10 5.5E-15 96.3 12.4 117 80-206 32-153 (154)
56 KOG0450 2-oxoglutarate dehydro 98.8 1.5E-07 3.2E-12 94.6 16.7 260 44-313 656-969 (1017)
57 COG0567 SucA 2-oxoglutarate de 98.6 4.9E-07 1.1E-11 94.1 11.7 264 38-312 567-862 (906)
58 KOG0451 Predicted 2-oxoglutara 98.5 7.4E-07 1.6E-11 87.8 12.0 267 34-310 561-870 (913)
59 PF01855 POR_N: Pyruvate flavo 98.5 5.1E-07 1.1E-11 81.9 9.9 111 86-208 38-155 (230)
60 PF03894 XFP: D-xylulose 5-pho 97.8 0.0017 3.6E-08 56.1 14.9 151 41-196 2-178 (179)
61 cd07034 TPP_PYR_PFOR_IOR-alpha 97.6 0.0051 1.1E-07 52.2 16.3 110 83-205 41-158 (160)
62 cd07035 TPP_PYR_POX_like Pyrim 97.2 0.0054 1.2E-07 51.7 11.2 136 53-205 10-153 (155)
63 PF02776 TPP_enzyme_N: Thiamin 96.7 0.036 7.7E-07 47.7 12.5 153 38-209 2-163 (172)
64 TIGR03297 Ppyr-DeCO2ase phosph 96.3 0.047 1E-06 53.0 11.2 124 77-210 20-155 (361)
65 PRK07092 benzoylformate decarb 96.1 0.59 1.3E-05 47.6 18.8 151 36-209 11-172 (530)
66 PRK08322 acetolactate synthase 96.1 0.4 8.7E-06 48.9 17.6 114 85-210 40-162 (547)
67 TIGR03845 sulfopyru_alph sulfo 95.8 0.19 4.2E-06 42.9 11.8 112 85-208 36-155 (157)
68 TIGR03457 sulphoacet_xsc sulfo 95.6 0.86 1.9E-05 46.9 17.7 113 85-210 41-162 (579)
69 PRK08611 pyruvate oxidase; Pro 95.5 1.3 2.8E-05 45.6 18.9 155 37-210 4-166 (576)
70 PRK08199 thiamine pyrophosphat 95.5 2.1 4.6E-05 43.8 20.3 114 85-210 48-170 (557)
71 cd07039 TPP_PYR_POX Pyrimidine 95.4 0.92 2E-05 38.8 14.5 110 85-207 40-158 (164)
72 PRK08617 acetolactate synthase 95.3 1.5 3.1E-05 44.9 18.0 152 35-209 3-165 (552)
73 PRK07525 sulfoacetaldehyde ace 95.3 0.57 1.2E-05 48.4 15.1 114 85-210 45-166 (588)
74 cd02001 TPP_ComE_PpyrDC Thiami 95.1 0.53 1.2E-05 40.0 12.1 144 41-204 2-151 (157)
75 TIGR02418 acolac_catab acetola 94.9 0.53 1.2E-05 47.9 13.7 113 85-209 38-159 (539)
76 PRK07586 hypothetical protein; 94.8 0.82 1.8E-05 46.3 14.6 201 85-297 41-270 (514)
77 PRK12474 hypothetical protein; 94.6 5.4 0.00012 40.4 20.1 155 35-209 3-166 (518)
78 PRK08266 hypothetical protein; 94.6 2.7 5.8E-05 42.8 17.9 153 37-209 4-169 (542)
79 PRK09124 pyruvate dehydrogenas 94.6 2.9 6.3E-05 43.0 18.1 112 85-210 43-164 (574)
80 COG0028 IlvB Thiamine pyrophos 94.6 2.3 4.9E-05 43.7 17.1 152 38-210 3-163 (550)
81 PRK05858 hypothetical protein; 94.5 0.69 1.5E-05 47.2 13.4 149 38-209 6-165 (542)
82 PRK07524 hypothetical protein; 94.5 0.86 1.9E-05 46.4 14.1 113 85-210 41-166 (535)
83 PRK06965 acetolactate synthase 94.5 2.3 5E-05 43.9 17.2 112 85-209 61-182 (587)
84 PRK07064 hypothetical protein; 94.4 5.2 0.00011 40.7 19.4 112 85-209 43-167 (544)
85 TIGR02720 pyruv_oxi_spxB pyruv 94.2 1.6 3.5E-05 44.9 15.4 114 85-210 40-161 (575)
86 PRK06466 acetolactate synthase 94.1 1.6 3.6E-05 44.8 15.1 113 84-209 43-165 (574)
87 PRK06457 pyruvate dehydrogenas 94.1 0.89 1.9E-05 46.5 13.1 114 85-210 41-162 (549)
88 TIGR00118 acolac_lg acetolacta 94.0 1.1 2.3E-05 45.9 13.5 112 85-209 41-162 (558)
89 PLN02470 acetolactate synthase 93.9 1.9 4E-05 44.5 15.1 155 35-209 11-174 (585)
90 PRK07979 acetolactate synthase 93.8 1.9 4.2E-05 44.3 14.9 114 85-209 44-165 (574)
91 PRK06725 acetolactate synthase 93.8 1.1 2.4E-05 46.1 13.1 115 84-210 53-176 (570)
92 PRK08978 acetolactate synthase 93.8 0.98 2.1E-05 46.1 12.7 111 85-209 40-161 (548)
93 PRK11269 glyoxylate carboligas 93.7 3.9 8.5E-05 42.2 17.1 151 37-209 4-166 (591)
94 PRK07710 acetolactate synthase 93.7 2.7 5.8E-05 43.2 15.8 153 35-208 14-175 (571)
95 cd07037 TPP_PYR_MenD Pyrimidin 93.6 0.8 1.7E-05 39.2 10.1 107 85-204 37-159 (162)
96 PRK08273 thiamine pyrophosphat 93.5 2.9 6.3E-05 43.2 15.8 116 85-210 44-166 (597)
97 TIGR02177 PorB_KorB 2-oxoacid: 93.5 1.3 2.9E-05 41.6 12.0 142 39-204 12-182 (287)
98 cd02004 TPP_BZL_OCoD_HPCL Thia 93.5 1.2 2.5E-05 38.2 10.9 111 83-204 38-168 (172)
99 PRK06048 acetolactate synthase 93.3 3.3 7.3E-05 42.4 15.7 152 37-209 8-168 (561)
100 COG4032 Predicted thiamine-pyr 93.2 0.24 5.2E-06 41.4 5.8 108 86-206 43-162 (172)
101 PRK09107 acetolactate synthase 93.2 1.6 3.6E-05 45.1 13.4 113 84-209 50-172 (595)
102 PRK06546 pyruvate dehydrogenas 93.2 2.5 5.3E-05 43.6 14.6 115 85-210 43-164 (578)
103 cd02018 TPP_PFOR Thiamine pyro 93.1 3 6.5E-05 37.9 13.6 38 167-204 159-199 (237)
104 PRK08527 acetolactate synthase 93.1 2.5 5.5E-05 43.3 14.5 112 85-209 43-164 (563)
105 PRK07789 acetolactate synthase 92.9 5.1 0.00011 41.6 16.6 113 85-209 71-192 (612)
106 PRK08155 acetolactate synthase 92.9 3.7 8E-05 42.1 15.4 154 36-209 12-174 (564)
107 PRK06882 acetolactate synthase 92.7 4.9 0.00011 41.3 16.0 110 85-208 44-164 (574)
108 PRK07282 acetolactate synthase 92.6 2.3 5.1E-05 43.6 13.3 113 85-209 50-171 (566)
109 cd07038 TPP_PYR_PDC_IPDC_like 92.4 4.2 9.1E-05 34.6 12.8 109 85-206 37-161 (162)
110 PRK08327 acetolactate synthase 92.3 4.7 0.0001 41.4 15.2 113 85-209 52-182 (569)
111 PRK06456 acetolactate synthase 92.2 1.7 3.6E-05 44.7 11.7 113 85-209 45-166 (572)
112 cd02010 TPP_ALS Thiamine pyrop 92.0 2.4 5.2E-05 36.6 10.8 111 83-204 38-166 (177)
113 TIGR01504 glyox_carbo_lig glyo 91.7 4.6 9.9E-05 41.7 14.4 112 85-210 43-166 (588)
114 cd02009 TPP_SHCHC_synthase Thi 91.5 2.4 5.1E-05 36.5 10.3 113 81-204 39-171 (175)
115 PRK11866 2-oxoacid ferredoxin 91.4 3.9 8.4E-05 38.3 12.2 145 39-204 18-188 (279)
116 TIGR03394 indol_phenyl_DC indo 91.0 5.4 0.00012 40.7 14.0 115 85-210 40-167 (535)
117 cd02015 TPP_AHAS Thiamine pyro 91.0 3.8 8.1E-05 35.5 11.2 111 83-204 40-170 (186)
118 cd03376 TPP_PFOR_porB_like Thi 90.5 9.7 0.00021 34.6 13.8 37 168-204 158-196 (235)
119 PRK08979 acetolactate synthase 90.4 11 0.00024 38.8 15.6 113 85-209 44-165 (572)
120 TIGR03254 oxalate_oxc oxalyl-C 89.9 4.6 0.0001 41.3 12.4 113 85-210 42-166 (554)
121 cd02003 TPP_IolD Thiamine pyro 89.8 5.2 0.00011 35.4 11.1 37 167-204 144-180 (205)
122 cd02014 TPP_POX Thiamine pyrop 89.7 11 0.00024 32.4 12.9 112 80-204 39-169 (178)
123 PRK07418 acetolactate synthase 89.7 4.1 9E-05 42.3 11.9 114 85-209 62-183 (616)
124 TIGR03846 sulfopy_beta sulfopy 89.5 8.5 0.00018 33.4 12.1 143 40-205 1-153 (181)
125 CHL00099 ilvB acetohydroxyacid 89.3 4.8 0.0001 41.5 12.1 113 85-209 53-174 (585)
126 PRK06276 acetolactate synthase 89.1 4 8.6E-05 42.1 11.3 111 85-209 40-161 (586)
127 PRK06154 hypothetical protein; 88.9 8.4 0.00018 39.6 13.4 149 35-209 18-177 (565)
128 cd00568 TPP_enzymes Thiamine p 88.9 4.3 9.4E-05 34.0 9.6 99 95-204 50-165 (168)
129 PRK06112 acetolactate synthase 88.8 5.3 0.00011 41.1 11.9 152 35-210 12-173 (578)
130 PF09363 XFP_C: XFP C-terminal 88.5 2.6 5.7E-05 37.4 8.0 73 239-316 35-120 (203)
131 PRK11867 2-oxoglutarate ferred 88.4 9.3 0.0002 35.9 12.2 142 39-204 28-198 (286)
132 PRK11864 2-ketoisovalerate fer 88.1 4 8.6E-05 38.6 9.5 35 171-205 170-204 (300)
133 PRK11865 pyruvate ferredoxin o 88.1 7.1 0.00015 36.9 11.2 34 171-204 174-207 (299)
134 cd02013 TPP_Xsc_like Thiamine 87.9 6.1 0.00013 34.7 10.2 111 83-204 43-175 (196)
135 PRK07449 2-succinyl-5-enolpyru 87.9 11 0.00023 38.8 13.4 113 85-208 49-174 (568)
136 PRK09259 putative oxalyl-CoA d 87.5 7.9 0.00017 39.8 12.2 115 84-210 48-173 (569)
137 cd02002 TPP_BFDC Thiamine pyro 87.5 7.9 0.00017 33.1 10.5 37 167-204 139-175 (178)
138 TIGR03393 indolpyr_decarb indo 87.3 13 0.00027 38.0 13.5 114 85-211 41-169 (539)
139 PLN02573 pyruvate decarboxylas 86.7 35 0.00075 35.2 16.4 112 85-209 56-183 (578)
140 PRK09628 oorB 2-oxoglutarate-a 85.0 28 0.0006 32.5 13.3 143 41-205 29-198 (277)
141 cd03372 TPP_ComE Thiamine pyro 84.8 25 0.00054 30.4 12.3 141 40-204 1-151 (179)
142 cd01481 vWA_collagen_alpha3-VI 84.5 3 6.5E-05 35.6 6.3 55 241-298 110-164 (165)
143 PRK08155 acetolactate synthase 84.4 9.5 0.00021 39.1 11.0 110 83-204 409-539 (564)
144 PRK06163 hypothetical protein; 83.5 18 0.00039 32.0 11.0 147 39-204 14-169 (202)
145 cd02008 TPP_IOR_alpha Thiamine 83.5 10 0.00022 32.6 9.2 38 167-204 134-173 (178)
146 PF02775 TPP_enzyme_C: Thiamin 83.4 8.6 0.00019 32.0 8.5 110 83-203 18-151 (153)
147 cd02007 TPP_DXS Thiamine pyrop 82.9 9.1 0.0002 33.7 8.8 98 95-205 79-187 (195)
148 cd03375 TPP_OGFOR Thiamine pyr 82.9 16 0.00035 31.9 10.4 37 168-204 142-180 (193)
149 cd03028 GRX_PICOT_like Glutare 82.9 3.1 6.8E-05 31.7 5.1 68 238-310 7-82 (90)
150 PRK06457 pyruvate dehydrogenas 81.7 29 0.00063 35.4 13.2 111 83-204 386-515 (549)
151 PRK11869 2-oxoacid ferredoxin 80.5 11 0.00024 35.3 8.8 146 38-204 18-189 (280)
152 cd02012 TPP_TK Thiamine pyroph 80.3 25 0.00055 32.1 11.1 98 96-205 110-224 (255)
153 TIGR00173 menD 2-succinyl-5-en 80.1 14 0.00029 36.6 9.9 113 85-208 40-166 (432)
154 TIGR00365 monothiol glutaredox 79.6 3.9 8.5E-05 31.7 4.7 78 237-318 10-92 (97)
155 cd03371 TPP_PpyrDC Thiamine py 79.5 41 0.0009 29.3 13.2 110 83-204 41-159 (188)
156 COG1071 AcoA Pyruvate/2-oxoglu 79.3 9.6 0.00021 36.9 8.1 102 94-205 143-258 (358)
157 TIGR00118 acolac_lg acetolacta 78.6 15 0.00034 37.5 10.0 110 83-204 402-532 (558)
158 PF03102 NeuB: NeuB family; I 78.3 10 0.00022 34.7 7.7 70 240-311 114-190 (241)
159 TIGR03254 oxalate_oxc oxalyl-C 78.2 34 0.00073 35.0 12.3 147 43-204 371-534 (554)
160 TIGR03569 NeuB_NnaB N-acetylne 77.5 12 0.00026 35.8 8.3 71 241-313 135-214 (329)
161 COG0075 Serine-pyruvate aminot 77.4 15 0.00033 35.9 9.0 82 233-317 75-161 (383)
162 cd02006 TPP_Gcl Thiamine pyrop 76.7 14 0.0003 32.4 8.0 111 83-204 47-190 (202)
163 COG2089 SpsE Sialic acid synth 76.4 11 0.00024 35.9 7.4 85 237-323 146-241 (347)
164 PRK08617 acetolactate synthase 76.1 28 0.00061 35.5 11.1 111 81-204 402-532 (552)
165 TIGR03297 Ppyr-DeCO2ase phosph 75.8 81 0.0018 30.6 15.8 111 83-204 214-332 (361)
166 PRK06048 acetolactate synthase 75.7 31 0.00066 35.4 11.2 111 83-204 404-534 (561)
167 cd00860 ThrRS_anticodon ThrRS 75.7 17 0.00037 26.8 7.2 58 240-300 3-62 (91)
168 PRK08978 acetolactate synthase 74.7 39 0.00086 34.4 11.7 111 83-204 391-521 (548)
169 TIGR02190 GlrX-dom Glutaredoxi 74.6 20 0.00043 26.3 7.2 72 237-313 6-78 (79)
170 cd03033 ArsC_15kD Arsenate Red 74.4 9.1 0.0002 30.7 5.6 43 248-291 8-50 (113)
171 PRK08527 acetolactate synthase 74.2 27 0.00059 35.8 10.4 110 83-204 404-534 (563)
172 PRK05858 hypothetical protein; 72.9 25 0.00055 35.8 9.8 112 83-205 397-527 (542)
173 PF03358 FMN_red: NADPH-depend 71.9 9.3 0.0002 31.5 5.4 66 247-313 14-93 (152)
174 PRK05444 1-deoxy-D-xylulose-5- 71.1 28 0.0006 36.0 9.7 99 96-205 122-239 (580)
175 COG1393 ArsC Arsenate reductas 71.1 15 0.00032 29.7 6.1 42 249-291 10-51 (117)
176 PRK08266 hypothetical protein; 70.6 51 0.0011 33.5 11.4 111 83-204 392-521 (542)
177 PLN02980 2-oxoglutarate decarb 70.5 54 0.0012 38.4 12.7 148 41-206 301-465 (1655)
178 PRK09259 putative oxalyl-CoA d 70.5 48 0.001 34.0 11.3 146 43-204 378-542 (569)
179 TIGR02189 GlrX-like_plant Glut 70.4 22 0.00048 27.6 6.8 67 239-309 8-79 (99)
180 PF03960 ArsC: ArsC family; I 70.0 6.2 0.00013 31.2 3.7 42 249-291 5-46 (110)
181 TIGR02418 acolac_catab acetola 70.0 46 0.00099 33.9 10.9 113 81-204 396-526 (539)
182 PRK06546 pyruvate dehydrogenas 69.9 40 0.00086 34.8 10.5 109 83-204 398-526 (578)
183 cd03035 ArsC_Yffb Arsenate Red 69.8 12 0.00025 29.6 5.2 43 248-291 7-49 (105)
184 TIGR01616 nitro_assoc nitrogen 69.8 12 0.00027 30.6 5.5 42 248-290 9-50 (126)
185 PRK06466 acetolactate synthase 69.5 70 0.0015 32.8 12.2 111 83-204 413-544 (574)
186 PF10740 DUF2529: Protein of u 69.4 14 0.00029 32.1 5.8 88 184-271 24-115 (172)
187 PRK06882 acetolactate synthase 69.0 60 0.0013 33.3 11.6 111 83-204 411-542 (574)
188 PF01565 FAD_binding_4: FAD bi 68.8 46 0.001 26.8 8.9 77 177-258 3-82 (139)
189 PRK12315 1-deoxy-D-xylulose-5- 68.7 47 0.001 34.4 10.7 109 86-205 109-240 (581)
190 PRK06965 acetolactate synthase 68.4 55 0.0012 33.8 11.2 111 83-204 427-558 (587)
191 PRK06276 acetolactate synthase 68.3 49 0.0011 34.1 10.8 111 83-204 409-539 (586)
192 COG0028 IlvB Thiamine pyrophos 68.2 53 0.0011 33.8 10.9 116 77-204 392-527 (550)
193 TIGR03336 IOR_alpha indolepyru 68.0 46 0.001 34.5 10.5 113 83-205 395-527 (595)
194 cd02005 TPP_PDC_IPDC Thiamine 67.8 74 0.0016 27.4 10.4 37 168-204 130-170 (183)
195 cd00858 GlyRS_anticodon GlyRS 67.7 28 0.0006 27.9 7.1 58 239-300 27-88 (121)
196 PRK05778 2-oxoglutarate ferred 66.4 43 0.00094 31.7 9.1 142 38-204 28-199 (301)
197 PRK10853 putative reductase; P 66.4 12 0.00026 30.2 4.7 43 248-291 8-50 (118)
198 cd01080 NAD_bind_m-THF_DH_Cycl 65.4 20 0.00044 30.8 6.2 51 237-295 43-93 (168)
199 PRK06154 hypothetical protein; 65.4 82 0.0018 32.4 11.7 111 83-204 421-551 (565)
200 PRK10026 arsenate reductase; P 65.2 20 0.00044 30.0 6.0 43 248-291 10-52 (141)
201 PRK05899 transketolase; Review 65.1 44 0.00095 34.9 9.8 38 167-205 206-245 (624)
202 cd03034 ArsC_ArsC Arsenate Red 64.0 18 0.00039 28.8 5.3 43 248-291 7-49 (112)
203 KOG0225 Pyruvate dehydrogenase 64.0 27 0.00059 33.5 7.1 104 92-206 168-285 (394)
204 KOG2862 Alanine-glyoxylate ami 63.9 29 0.00063 33.2 7.2 77 233-313 87-165 (385)
205 TIGR00014 arsC arsenate reduct 63.8 18 0.00039 28.9 5.3 43 248-291 7-49 (114)
206 cd00859 HisRS_anticodon HisRS 63.8 34 0.00073 24.7 6.5 55 240-297 3-59 (91)
207 PRK07524 hypothetical protein; 63.4 56 0.0012 33.2 10.0 110 83-204 396-525 (535)
208 TIGR03586 PseI pseudaminic aci 63.3 51 0.0011 31.6 9.0 72 240-313 135-213 (327)
209 COG0426 FpaA Uncharacterized f 62.8 17 0.00037 35.6 5.7 52 240-294 248-302 (388)
210 PRK07710 acetolactate synthase 62.6 93 0.002 31.9 11.5 110 83-204 414-544 (571)
211 PF03129 HGTP_anticodon: Antic 62.3 26 0.00055 26.3 5.7 56 240-298 1-61 (94)
212 COG0680 HyaD Ni,Fe-hydrogenase 61.5 25 0.00054 30.1 6.0 56 239-298 2-64 (160)
213 PRK07092 benzoylformate decarb 60.9 1.1E+02 0.0025 30.9 11.7 111 83-204 398-526 (530)
214 PRK03767 NAD(P)H:quinone oxido 60.6 70 0.0015 27.9 8.9 69 246-316 12-95 (200)
215 PLN02790 transketolase 60.5 46 0.00099 35.0 8.9 73 122-205 153-235 (654)
216 PRK08199 thiamine pyrophosphat 60.5 71 0.0015 32.6 10.2 37 168-205 499-535 (557)
217 TIGR01504 glyox_carbo_lig glyo 60.3 41 0.00088 34.8 8.4 37 167-204 511-551 (588)
218 cd03027 GRX_DEP Glutaredoxin ( 58.9 24 0.00051 25.3 4.7 66 240-308 2-68 (73)
219 TIGR02181 GRX_bact Glutaredoxi 58.8 17 0.00038 26.3 4.1 66 247-319 6-75 (79)
220 PRK13344 spxA transcriptional 58.8 27 0.00058 28.8 5.5 43 248-291 8-50 (132)
221 KOG1184 Thiamine pyrophosphate 58.6 69 0.0015 32.6 9.2 147 43-208 6-170 (561)
222 PRK11269 glyoxylate carboligas 58.5 94 0.002 32.1 10.8 111 83-204 409-552 (591)
223 PRK08322 acetolactate synthase 57.9 97 0.0021 31.5 10.7 111 83-204 396-524 (547)
224 TIGR03393 indolpyr_decarb indo 57.9 2.2E+02 0.0048 28.9 14.4 149 37-205 356-524 (539)
225 PRK06112 acetolactate synthase 57.3 1.4E+02 0.0029 30.8 11.7 109 85-204 429-556 (578)
226 cd06063 H2MP_Cyano-H2up This g 57.2 37 0.00081 28.2 6.3 55 241-299 1-61 (146)
227 cd06062 H2MP_MemB-H2up Endopep 57.2 42 0.0009 27.9 6.6 54 241-298 1-61 (146)
228 cd03029 GRX_hybridPRX5 Glutare 56.4 69 0.0015 22.6 6.9 69 240-313 2-71 (72)
229 cd00738 HGTP_anticodon HGTP an 56.4 53 0.0011 24.2 6.5 58 240-300 3-65 (94)
230 PRK11200 grxA glutaredoxin 1; 56.3 44 0.00095 24.7 6.0 70 241-314 3-80 (85)
231 TIGR03457 sulphoacet_xsc sulfo 55.9 1.5E+02 0.0033 30.4 11.8 109 83-204 420-553 (579)
232 cd00861 ProRS_anticodon_short 55.9 62 0.0013 24.0 6.9 58 240-300 3-65 (94)
233 TIGR02690 resist_ArsH arsenica 55.7 65 0.0014 29.0 7.9 63 250-313 43-113 (219)
234 PRK12559 transcriptional regul 54.7 40 0.00087 27.7 6.0 42 248-290 8-49 (131)
235 PRK08273 thiamine pyrophosphat 54.6 1.6E+02 0.0034 30.5 11.6 37 167-204 506-542 (597)
236 PRK08611 pyruvate oxidase; Pro 54.5 1.2E+02 0.0026 31.2 10.8 37 167-204 490-526 (576)
237 cd02977 ArsC_family Arsenate R 54.3 35 0.00075 26.4 5.3 43 248-291 7-49 (105)
238 PRK10264 hydrogenase 1 maturat 54.1 42 0.00092 29.6 6.4 56 239-298 4-66 (195)
239 PLN02409 serine--glyoxylate am 53.8 76 0.0016 30.9 8.8 68 235-305 81-153 (401)
240 PF07931 CPT: Chloramphenicol 53.3 1.1E+02 0.0024 26.4 8.8 17 75-92 19-35 (174)
241 PRK10466 hybD hydrogenase 2 ma 53.0 66 0.0014 27.3 7.3 56 240-299 2-64 (164)
242 PRK07586 hypothetical protein; 52.9 2.5E+02 0.0054 28.3 12.6 37 167-204 475-511 (514)
243 PRK08979 acetolactate synthase 52.7 1.6E+02 0.0035 30.2 11.3 111 83-204 411-542 (572)
244 PF07905 PucR: Purine cataboli 52.5 63 0.0014 25.9 6.8 71 241-312 44-121 (123)
245 PRK12474 hypothetical protein; 52.5 1.4E+02 0.0031 30.1 10.8 36 168-204 480-515 (518)
246 PRK06756 flavodoxin; Provision 52.4 86 0.0019 25.7 7.8 30 246-275 12-41 (148)
247 COG0543 UbiB 2-polyprenylpheno 51.8 78 0.0017 28.8 8.0 71 229-300 97-172 (252)
248 COG0655 WrbA Multimeric flavod 51.5 80 0.0017 27.7 7.8 69 246-315 13-100 (207)
249 PRK07449 2-succinyl-5-enolpyru 51.4 47 0.001 34.0 7.2 36 168-204 510-545 (568)
250 TIGR02194 GlrX_NrdH Glutaredox 51.1 34 0.00074 24.4 4.5 58 248-307 7-65 (72)
251 cd03032 ArsC_Spx Arsenate Redu 51.1 40 0.00086 26.8 5.3 42 248-290 8-49 (115)
252 cd00518 H2MP Hydrogenase speci 50.9 53 0.0012 26.9 6.2 54 243-300 2-61 (139)
253 cd01474 vWA_ATR ATR (Anthrax T 50.5 23 0.0005 30.4 4.1 43 253-298 123-165 (185)
254 PRK07789 acetolactate synthase 50.5 1.5E+02 0.0033 30.7 10.8 111 83-204 437-572 (612)
255 TIGR01617 arsC_related transcr 50.5 30 0.00065 27.5 4.5 44 247-291 6-49 (117)
256 cd06068 H2MP_like-1 Putative [ 50.4 52 0.0011 27.2 6.1 54 243-299 2-61 (144)
257 cd06070 H2MP_like-2 Putative [ 50.3 49 0.0011 27.3 5.9 52 243-300 2-57 (140)
258 cd03418 GRX_GRXb_1_3_like Glut 50.1 54 0.0012 23.1 5.5 67 241-310 2-70 (75)
259 CHL00099 ilvB acetohydroxyacid 50.1 1.4E+02 0.0031 30.7 10.5 111 83-204 420-551 (585)
260 cd03036 ArsC_like Arsenate Red 49.9 37 0.0008 26.8 4.9 43 248-291 7-49 (111)
261 PRK07064 hypothetical protein; 49.8 1E+02 0.0022 31.3 9.3 37 167-204 488-524 (544)
262 PRK06725 acetolactate synthase 49.6 83 0.0018 32.4 8.6 110 83-204 412-541 (570)
263 PRK09124 pyruvate dehydrogenas 49.5 1.3E+02 0.0028 30.9 10.1 111 83-204 398-526 (574)
264 PF00258 Flavodoxin_1: Flavodo 48.3 34 0.00074 27.7 4.6 47 246-297 7-53 (143)
265 cd01482 vWA_collagen_alphaI-XI 47.9 54 0.0012 27.4 5.9 55 241-298 107-163 (164)
266 PF04430 DUF498: Protein of un 47.7 13 0.00027 29.5 1.8 38 237-274 52-90 (110)
267 TIGR00072 hydrog_prot hydrogen 47.5 71 0.0015 26.4 6.5 53 243-299 2-61 (145)
268 COG2241 CobL Precorrin-6B meth 46.7 96 0.0021 27.8 7.4 69 239-319 95-166 (210)
269 cd03419 GRX_GRXh_1_2_like Glut 46.6 99 0.0021 22.1 6.5 69 247-319 7-79 (82)
270 PRK09107 acetolactate synthase 46.3 1.9E+02 0.0041 30.0 10.7 112 83-205 420-551 (595)
271 PRK06456 acetolactate synthase 46.0 1.4E+02 0.0031 30.5 9.7 111 83-204 411-541 (572)
272 PRK10638 glutaredoxin 3; Provi 45.9 52 0.0011 24.1 4.9 66 241-309 4-70 (83)
273 cd01452 VWA_26S_proteasome_sub 45.8 90 0.0019 27.4 7.0 59 241-300 111-176 (187)
274 PLN02470 acetolactate synthase 45.6 1.7E+02 0.0037 30.1 10.2 37 167-204 517-553 (585)
275 KOG1185 Thiamine pyrophosphate 45.2 3.5E+02 0.0077 27.6 14.2 117 78-208 47-173 (571)
276 PF00289 CPSase_L_chain: Carba 45.2 66 0.0014 25.5 5.6 76 239-318 3-100 (110)
277 cd01475 vWA_Matrilin VWA_Matri 45.1 53 0.0012 29.1 5.7 56 241-299 112-169 (224)
278 COG1104 NifS Cysteine sulfinat 45.0 48 0.001 32.5 5.6 75 243-317 94-171 (386)
279 COG3961 Pyruvate decarboxylase 44.9 1.4E+02 0.0031 30.4 9.0 148 43-208 6-170 (557)
280 PRK10569 NAD(P)H-dependent FMN 44.8 91 0.002 27.2 7.0 63 250-313 17-89 (191)
281 PF03853 YjeF_N: YjeF-related 43.6 93 0.002 26.5 6.7 51 241-291 29-81 (169)
282 PRK07979 acetolactate synthase 43.1 3.2E+02 0.0069 28.0 11.7 111 83-204 411-544 (574)
283 PRK07418 acetolactate synthase 41.8 1.2E+02 0.0025 31.6 8.4 36 168-204 520-555 (616)
284 PRK01655 spxA transcriptional 41.4 57 0.0012 26.7 4.9 43 247-290 7-49 (131)
285 KOG1185 Thiamine pyrophosphate 41.3 1.7E+02 0.0036 29.8 8.7 150 36-204 379-556 (571)
286 cd05569 PTS_IIB_fructose PTS_I 41.2 1.6E+02 0.0035 22.5 7.2 56 241-300 2-64 (96)
287 PRK11183 D-lactate dehydrogena 41.1 1.2E+02 0.0026 31.3 7.9 84 176-260 40-127 (564)
288 cd00248 Mth938-like Mth938-lik 41.1 19 0.00041 28.6 1.9 35 239-273 53-88 (109)
289 TIGR02326 transamin_PhnW 2-ami 41.0 1.2E+02 0.0027 28.6 7.9 20 279-298 147-166 (363)
290 cd01472 vWA_collagen von Wille 40.9 72 0.0016 26.5 5.6 55 241-298 107-163 (164)
291 PRK11544 hycI hydrogenase 3 ma 40.8 1.1E+02 0.0025 25.6 6.8 55 240-298 2-63 (156)
292 COG0299 PurN Folate-dependent 40.4 45 0.00097 29.6 4.2 48 35-89 59-107 (200)
293 PLN02735 carbamoyl-phosphate s 40.2 74 0.0016 35.7 6.9 79 239-320 24-125 (1102)
294 cd01453 vWA_transcription_fact 40.0 77 0.0017 27.3 5.7 42 253-298 125-167 (183)
295 cd05125 Mth938_2P1-like Mth938 39.8 23 0.0005 28.5 2.2 38 236-273 52-90 (114)
296 TIGR00142 hycI hydrogenase mat 39.7 73 0.0016 26.4 5.4 53 242-298 2-62 (146)
297 TIGR00130 frhD coenzyme F420-r 39.2 69 0.0015 26.8 5.2 60 239-299 3-70 (153)
298 TIGR01718 Uridine-psphlse urid 38.9 1.5E+02 0.0032 26.9 7.7 74 177-274 14-87 (245)
299 PF12500 TRSP: TRSP domain C t 38.5 56 0.0012 27.8 4.4 33 237-269 56-88 (155)
300 TIGR03567 FMN_reduc_SsuE FMN r 38.4 1.4E+02 0.003 25.3 7.0 64 249-313 15-88 (171)
301 COG2820 Udp Uridine phosphoryl 38.4 54 0.0012 30.0 4.5 77 176-276 18-94 (248)
302 TIGR03181 PDH_E1_alph_x pyruva 38.3 1.6E+02 0.0035 28.2 8.2 62 142-205 171-243 (341)
303 PRK08114 cystathionine beta-ly 37.8 85 0.0018 30.9 6.3 23 278-300 164-188 (395)
304 PRK03092 ribose-phosphate pyro 37.8 2.8E+02 0.006 26.2 9.5 64 237-300 35-117 (304)
305 cd05212 NAD_bind_m-THF_DH_Cycl 37.5 85 0.0018 26.1 5.4 36 237-274 27-62 (140)
306 PRK10824 glutaredoxin-4; Provi 37.0 73 0.0016 25.7 4.7 67 238-310 14-89 (115)
307 PRK08105 flavodoxin; Provision 36.9 39 0.00084 28.3 3.2 56 243-305 5-64 (149)
308 cd03412 CbiK_N Anaerobic cobal 36.2 1.7E+02 0.0037 23.6 6.9 74 241-314 3-94 (127)
309 PRK07199 phosphoribosylpyropho 35.7 2.6E+02 0.0056 26.3 9.0 64 237-300 48-128 (301)
310 PRK07525 sulfoacetaldehyde ace 35.7 2.5E+02 0.0055 28.9 9.7 111 83-204 425-558 (588)
311 PRK06703 flavodoxin; Provision 35.6 1.2E+02 0.0025 25.0 6.0 29 247-275 13-41 (151)
312 cd05560 Xcc1710_like Xcc1710_l 35.6 30 0.00066 27.5 2.3 37 237-273 51-88 (109)
313 TIGR02853 spore_dpaA dipicolin 35.6 1.1E+02 0.0024 28.6 6.4 55 237-294 150-214 (287)
314 COG4231 Indolepyruvate ferredo 35.3 1.1E+02 0.0024 31.9 6.7 103 95-206 432-552 (640)
315 PF14258 DUF4350: Domain of un 35.2 1.1E+02 0.0023 21.7 5.0 51 255-314 9-61 (70)
316 PRK03359 putative electron tra 35.2 1.9E+02 0.0041 26.7 7.8 75 239-313 55-138 (256)
317 PRK05967 cystathionine beta-ly 35.1 1.6E+02 0.0034 29.0 7.6 25 276-300 164-188 (395)
318 PLN02573 pyruvate decarboxylas 35.0 3.7E+02 0.0079 27.7 10.7 145 43-204 385-548 (578)
319 PRK12815 carB carbamoyl phosph 34.9 1.4E+02 0.0031 33.4 8.1 53 239-291 8-82 (1068)
320 PRK00170 azoreductase; Reviewe 34.9 1.7E+02 0.0038 25.1 7.3 64 249-313 18-109 (201)
321 TIGR03249 KdgD 5-dehydro-4-deo 34.8 83 0.0018 29.4 5.5 40 243-282 78-117 (296)
322 PRK10329 glutaredoxin-like pro 34.8 1.9E+02 0.004 21.4 6.9 66 241-312 3-72 (81)
323 PRK05802 hypothetical protein; 34.8 1.5E+02 0.0032 28.1 7.3 38 238-275 172-210 (320)
324 PRK07282 acetolactate synthase 34.4 3.4E+02 0.0074 27.8 10.4 110 83-204 408-537 (566)
325 PRK05939 hypothetical protein; 34.2 1.5E+02 0.0031 29.1 7.3 23 278-300 148-170 (397)
326 PRK05569 flavodoxin; Provision 34.1 1.7E+02 0.0038 23.5 6.8 30 246-275 12-41 (141)
327 TIGR02006 IscS cysteine desulf 33.9 1.9E+02 0.0041 27.9 8.1 26 278-303 159-184 (402)
328 COG1504 Uncharacterized conser 33.8 28 0.00062 27.9 1.8 56 234-294 57-114 (121)
329 PRK08306 dipicolinate synthase 33.7 1.2E+02 0.0026 28.4 6.3 55 237-294 151-215 (296)
330 PF00676 E1_dh: Dehydrogenase 33.6 1.3E+02 0.0027 28.4 6.5 99 97-205 107-222 (300)
331 PRK09004 FMN-binding protein M 33.5 1.3E+02 0.0028 25.0 5.9 53 244-305 6-62 (146)
332 COG1945 Pyruvoyl-dependent arg 33.4 28 0.0006 29.8 1.8 71 242-313 9-88 (163)
333 PRK09739 hypothetical protein; 33.1 1.5E+02 0.0033 25.7 6.6 64 249-313 19-102 (199)
334 PRK07308 flavodoxin; Validated 33.1 1.9E+02 0.0042 23.6 6.9 30 246-275 12-41 (146)
335 PLN02269 Pyruvate dehydrogenas 33.0 2.4E+02 0.0052 27.4 8.4 61 142-205 187-256 (362)
336 cd01465 vWA_subgroup VWA subgr 32.7 2.1E+02 0.0045 23.4 7.2 46 251-298 116-162 (170)
337 PF02441 Flavoprotein: Flavopr 32.5 54 0.0012 26.5 3.4 36 240-275 2-38 (129)
338 PTZ00089 transketolase; Provis 31.7 3.2E+02 0.0068 28.9 9.7 73 122-205 164-246 (661)
339 PLN02651 cysteine desulfurase 31.6 2.2E+02 0.0048 27.0 8.0 21 278-298 155-175 (364)
340 PTZ00062 glutaredoxin; Provisi 31.6 1E+02 0.0022 27.4 5.2 74 238-319 112-194 (204)
341 COG4565 CitB Response regulato 31.0 1.3E+02 0.0028 27.2 5.6 98 168-290 18-117 (224)
342 PRK02948 cysteine desulfurase; 30.9 2.5E+02 0.0055 26.6 8.3 21 278-298 155-175 (381)
343 TIGR01369 CPSaseII_lrg carbamo 30.9 1.1E+02 0.0025 34.0 6.5 53 239-291 7-81 (1050)
344 TIGR02720 pyruv_oxi_spxB pyruv 30.6 5.3E+02 0.012 26.4 11.0 37 167-204 490-528 (575)
345 TIGR03402 FeS_nifS cysteine de 30.5 2.2E+02 0.0048 27.0 7.8 25 277-301 152-176 (379)
346 TIGR03566 FMN_reduc_MsuE FMN r 30.2 2E+02 0.0043 24.3 6.7 63 250-313 16-91 (174)
347 COG2805 PilT Tfp pilus assembl 30.1 54 0.0012 31.3 3.3 23 40-62 184-206 (353)
348 PF11823 DUF3343: Protein of u 29.9 64 0.0014 23.4 3.1 23 249-271 10-32 (73)
349 cd06067 H2MP_MemB-H2evol Endop 29.9 1.9E+02 0.0041 23.6 6.2 52 243-298 2-60 (136)
350 PF07991 IlvN: Acetohydroxy ac 29.7 69 0.0015 27.6 3.6 76 237-315 3-87 (165)
351 PRK13018 cell division protein 29.6 1.8E+02 0.0038 28.6 6.9 62 237-301 111-186 (378)
352 TIGR03235 DNA_S_dndA cysteine 29.6 2.4E+02 0.0051 26.5 7.8 24 278-301 155-178 (353)
353 PRK00934 ribose-phosphate pyro 29.4 3.9E+02 0.0085 24.8 9.0 64 237-300 45-125 (285)
354 TIGR01755 flav_wrbA NAD(P)H:qu 29.3 3E+02 0.0064 24.0 7.8 68 246-316 11-94 (197)
355 PLN02980 2-oxoglutarate decarb 29.2 2.9E+02 0.0063 32.6 9.6 36 168-204 850-885 (1655)
356 PRK14012 cysteine desulfurase; 29.2 2.6E+02 0.0057 26.9 8.2 14 278-291 161-174 (404)
357 cd01480 vWA_collagen_alpha_1-V 29.1 1.3E+02 0.0027 25.8 5.3 43 252-297 128-170 (186)
358 PRK05568 flavodoxin; Provision 29.0 1.4E+02 0.003 24.1 5.3 30 247-276 13-42 (142)
359 CHL00201 syh histidine-tRNA sy 28.7 1.6E+02 0.0035 29.1 6.7 57 239-298 326-384 (430)
360 COG0695 GrxC Glutaredoxin and 28.6 1.3E+02 0.0028 22.2 4.6 56 248-304 9-66 (80)
361 PRK02458 ribose-phosphate pyro 28.4 4.4E+02 0.0094 25.1 9.2 64 237-300 55-137 (323)
362 PRK14175 bifunctional 5,10-met 28.3 1.6E+02 0.0034 27.7 6.1 48 237-292 157-204 (286)
363 PF03720 UDPG_MGDP_dh_C: UDP-g 28.3 42 0.00092 26.2 2.0 65 252-316 18-94 (106)
364 PRK01259 ribose-phosphate pyro 28.0 4.1E+02 0.009 25.1 9.0 64 237-300 46-128 (309)
365 TIGR01753 flav_short flavodoxi 27.9 2.2E+02 0.0047 22.6 6.3 30 247-276 10-39 (140)
366 COG0277 GlcD FAD/FMN-containin 27.8 2.3E+02 0.0049 27.7 7.5 83 169-258 27-113 (459)
367 cd03045 GST_N_Delta_Epsilon GS 27.6 1.2E+02 0.0027 21.1 4.3 62 253-315 12-74 (74)
368 PRK09590 celB cellobiose phosp 27.4 1.6E+02 0.0034 23.2 5.1 49 239-289 51-102 (104)
369 PRK02812 ribose-phosphate pyro 27.4 5.6E+02 0.012 24.5 11.8 116 168-300 14-149 (330)
370 PRK05294 carB carbamoyl phosph 27.2 1.1E+02 0.0024 34.1 5.7 53 239-291 8-82 (1066)
371 PRK13685 hypothetical protein; 27.1 1.1E+02 0.0024 29.0 5.0 46 253-298 217-275 (326)
372 PF01012 ETF: Electron transfe 26.8 2.4E+02 0.0053 23.4 6.6 76 238-313 32-113 (164)
373 COG4635 HemG Flavodoxin [Energ 26.5 75 0.0016 27.4 3.2 59 247-313 12-70 (175)
374 PLN02369 ribose-phosphate pyro 26.5 5.5E+02 0.012 24.2 9.6 64 237-300 37-119 (302)
375 PRK11230 glycolate oxidase sub 26.4 3.1E+02 0.0068 27.8 8.3 87 170-265 52-142 (499)
376 cd01451 vWA_Magnesium_chelatas 26.4 1.8E+02 0.004 24.5 5.8 46 254-300 122-168 (178)
377 PF00266 Aminotran_5: Aminotra 26.2 3.4E+02 0.0074 25.7 8.3 32 263-294 112-143 (371)
378 CHL00149 odpA pyruvate dehydro 26.2 3E+02 0.0064 26.4 7.7 63 142-205 184-256 (341)
379 TIGR03394 indol_phenyl_DC indo 26.2 5.4E+02 0.012 26.2 10.1 140 43-204 361-517 (535)
380 PF00701 DHDPS: Dihydrodipicol 26.1 2E+02 0.0044 26.5 6.5 42 242-283 73-115 (289)
381 PRK09754 phenylpropionate diox 26.1 1.2E+02 0.0026 29.4 5.1 34 237-273 143-176 (396)
382 PF00070 Pyr_redox: Pyridine n 26.1 1.2E+02 0.0025 22.0 4.0 47 241-290 2-53 (80)
383 COG0059 IlvC Ketol-acid reduct 26.0 1.4E+02 0.003 28.6 5.1 75 236-315 16-101 (338)
384 COG0124 HisS Histidyl-tRNA syn 26.0 2.4E+02 0.0053 28.1 7.2 60 238-300 335-396 (429)
385 COG0062 Uncharacterized conser 25.9 1.8E+02 0.0038 26.0 5.7 46 241-286 53-98 (203)
386 KOG1017 Predicted uracil phosp 25.8 1.6E+02 0.0034 26.4 5.1 55 242-300 197-253 (267)
387 PF00975 Thioesterase: Thioest 25.6 1.7E+02 0.0037 25.2 5.7 29 240-268 67-95 (229)
388 PRK13403 ketol-acid reductoiso 25.6 2.4E+02 0.0053 27.1 6.9 54 237-294 15-76 (335)
389 COG1010 CobJ Precorrin-3B meth 25.5 1.1E+02 0.0025 27.9 4.4 37 266-303 129-168 (249)
390 PLN02463 lycopene beta cyclase 25.4 82 0.0018 31.5 3.9 36 239-277 29-64 (447)
391 PRK06222 ferredoxin-NADP(+) re 25.3 1.2E+02 0.0025 28.1 4.7 32 239-270 99-130 (281)
392 PRK13905 murB UDP-N-acetylenol 25.3 3.9E+02 0.0085 24.9 8.3 29 177-205 33-61 (298)
393 TIGR00442 hisS histidyl-tRNA s 25.3 2.2E+02 0.0047 27.6 6.8 57 239-298 323-381 (397)
394 COG0677 WecC UDP-N-acetyl-D-ma 25.3 1.3E+02 0.0029 29.8 5.1 50 251-301 342-400 (436)
395 PRK12770 putative glutamate sy 25.2 1E+02 0.0022 29.4 4.3 33 237-272 17-49 (352)
396 TIGR01752 flav_long flavodoxin 25.2 2.6E+02 0.0056 23.5 6.5 33 243-275 3-37 (167)
397 KOG1395 Tryptophan synthase be 25.1 3.7E+02 0.008 26.4 7.9 87 44-131 128-219 (477)
398 PRK06827 phosphoribosylpyropho 25.1 4.9E+02 0.011 25.6 9.0 63 237-300 76-170 (382)
399 TIGR00106 uncharacterized prot 25.0 1.8E+02 0.004 22.5 5.0 49 240-288 4-56 (97)
400 COG1691 NCAIR mutase (PurE)-re 25.0 3.9E+02 0.0084 24.5 7.5 71 239-313 118-194 (254)
401 PRK00037 hisS histidyl-tRNA sy 24.9 2.2E+02 0.0048 27.7 6.8 57 239-298 319-377 (412)
402 cd01476 VWA_integrin_invertebr 24.9 1.1E+02 0.0024 25.1 4.1 40 253-294 119-161 (163)
403 COG1440 CelA Phosphotransferas 24.8 1.6E+02 0.0035 23.3 4.5 46 238-285 48-94 (102)
404 cd05126 Mth938 Mth938 domain. 24.7 40 0.00086 27.2 1.2 37 235-271 55-93 (117)
405 PRK04930 glutathione-regulated 24.7 3E+02 0.0066 23.9 6.9 60 253-313 22-84 (184)
406 COG1519 KdtA 3-deoxy-D-manno-o 24.7 7.1E+02 0.015 24.8 10.8 52 144-204 231-290 (419)
407 PF02254 TrkA_N: TrkA-N domain 24.7 1.2E+02 0.0027 23.3 4.1 30 241-273 1-30 (116)
408 PF02662 FlpD: Methyl-viologen 24.7 3.8E+02 0.0082 21.6 7.5 60 241-300 2-63 (124)
409 PRK13479 2-aminoethylphosphona 24.6 3.3E+02 0.0072 25.6 7.8 23 278-300 148-170 (368)
410 TIGR00387 glcD glycolate oxida 24.6 2E+02 0.0044 28.2 6.5 80 178-265 1-84 (413)
411 cd06219 DHOD_e_trans_like1 FAD 24.4 1.5E+02 0.0032 26.7 5.1 34 238-271 97-130 (248)
412 PF02882 THF_DHG_CYH_C: Tetrah 24.4 1.2E+02 0.0025 26.0 4.1 52 237-297 35-86 (160)
413 cd01473 vWA_CTRP CTRP for CS 24.4 2.5E+02 0.0054 24.3 6.4 45 241-288 112-160 (192)
414 PHA03050 glutaredoxin; Provisi 24.4 3.5E+02 0.0076 21.2 6.7 70 238-310 12-88 (108)
415 PRK08134 O-acetylhomoserine am 24.3 2.1E+02 0.0045 28.4 6.5 34 267-301 150-188 (433)
416 TIGR00762 DegV EDD domain prot 24.2 1.5E+02 0.0033 27.3 5.2 61 143-204 23-84 (275)
417 PRK05920 aromatic acid decarbo 24.0 1.6E+02 0.0035 26.2 5.1 34 238-271 3-37 (204)
418 cd01450 vWFA_subfamily_ECM Von 23.8 1.3E+02 0.0028 24.2 4.3 47 241-290 107-155 (161)
419 TIGR00232 tktlase_bact transke 23.8 3.1E+02 0.0068 28.9 7.9 75 122-206 158-240 (653)
420 cd05008 SIS_GlmS_GlmD_1 SIS (S 23.6 1.6E+02 0.0034 23.0 4.6 31 241-271 2-33 (126)
421 cd06064 H2MP_F420-Reduc Endope 23.6 1.2E+02 0.0026 25.2 4.0 53 243-298 2-64 (150)
422 cd01521 RHOD_PspE2 Member of t 23.4 1.1E+02 0.0023 23.7 3.5 35 236-270 62-96 (110)
423 TIGR00204 dxs 1-deoxy-D-xylulo 23.4 6.2E+02 0.013 26.4 10.0 35 170-205 234-271 (617)
424 PRK05613 O-acetylhomoserine am 23.3 2.2E+02 0.0048 28.3 6.5 23 278-301 172-194 (437)
425 cd02000 TPP_E1_PDC_ADC_BCADC T 23.2 4E+02 0.0086 24.8 7.9 33 172-205 189-225 (293)
426 PRK15473 cbiF cobalt-precorrin 23.1 1.2E+02 0.0026 27.7 4.3 48 267-318 140-188 (257)
427 PRK08762 molybdopterin biosynt 23.0 3.1E+02 0.0067 26.5 7.3 24 291-318 136-159 (376)
428 PRK11921 metallo-beta-lactamas 22.9 3.2E+02 0.0068 26.6 7.4 70 239-313 248-323 (394)
429 cd05009 SIS_GlmS_GlmD_2 SIS (S 22.8 1.6E+02 0.0035 23.7 4.7 79 235-317 10-89 (153)
430 PRK14192 bifunctional 5,10-met 22.6 2.5E+02 0.0053 26.3 6.3 53 236-296 157-209 (283)
431 PF08859 DGC: DGC domain; Int 22.6 3.1E+02 0.0067 21.7 6.0 49 250-300 13-61 (110)
432 TIGR03403 nifS_epsilon cystein 22.5 4.5E+02 0.0098 24.9 8.4 24 277-300 156-179 (382)
433 PRK12753 transketolase; Review 22.4 6.8E+02 0.015 26.4 10.1 74 122-206 162-244 (663)
434 cd02066 GRX_family Glutaredoxi 22.3 2.5E+02 0.0054 18.7 5.7 57 248-307 8-66 (72)
435 PRK12831 putative oxidoreducta 22.3 2.5E+02 0.0054 28.0 6.6 41 236-279 279-319 (464)
436 cd00951 KDGDH 5-dehydro-4-deox 22.2 2.1E+02 0.0046 26.5 5.8 25 249-273 79-103 (289)
437 PRK14938 Ser-tRNA(Thr) hydrola 22.1 6.6E+02 0.014 24.8 9.1 58 239-299 275-334 (387)
438 PRK10310 PTS system galactitol 22.1 1.6E+02 0.0034 22.6 4.1 30 242-271 5-38 (94)
439 PF00731 AIRC: AIR carboxylase 22.1 4.9E+02 0.011 22.0 7.9 71 240-313 2-77 (150)
440 PRK01438 murD UDP-N-acetylmura 22.1 2.2E+02 0.0048 28.3 6.3 35 237-274 15-49 (480)
441 COG1165 MenD 2-succinyl-6-hydr 21.8 9.1E+02 0.02 25.0 13.1 141 47-204 15-171 (566)
442 PRK07313 phosphopantothenoylcy 21.8 1.9E+02 0.0041 25.1 5.0 35 239-273 2-37 (182)
443 PRK14194 bifunctional 5,10-met 21.8 1.9E+02 0.0042 27.4 5.4 51 237-295 158-208 (301)
444 TIGR01316 gltA glutamate synth 21.7 1.3E+02 0.0027 29.9 4.4 32 237-271 132-163 (449)
445 PLN02374 pyruvate dehydrogenas 21.7 4.1E+02 0.009 26.5 7.9 60 142-204 250-321 (433)
446 PRK00553 ribose-phosphate pyro 21.7 7.1E+02 0.015 23.8 9.4 64 237-300 55-137 (332)
447 PRK06136 uroporphyrin-III C-me 21.7 1.1E+02 0.0024 27.5 3.7 13 306-318 177-189 (249)
448 PRK08305 spoVFB dipicolinate s 21.6 1.8E+02 0.0039 25.7 4.9 38 237-274 4-43 (196)
449 PF00456 Transketolase_N: Tran 21.4 3.4E+02 0.0074 26.0 7.1 40 166-206 198-241 (332)
450 TIGR01465 cobM_cbiF precorrin- 21.4 1E+02 0.0022 27.2 3.4 35 280-318 145-179 (229)
451 PRK13984 putative oxidoreducta 21.3 1.2E+02 0.0026 31.3 4.3 34 236-272 281-314 (604)
452 PRK12342 hypothetical protein; 21.3 3.6E+02 0.0078 24.8 7.0 75 238-313 51-135 (254)
453 PF01936 NYN: NYN domain; Int 21.3 1.6E+02 0.0034 23.6 4.3 50 240-297 97-146 (146)
454 COG0278 Glutaredoxin-related p 21.3 56 0.0012 25.8 1.4 59 256-318 36-96 (105)
455 TIGR01361 DAHP_synth_Bsub phos 21.2 6.5E+02 0.014 23.1 8.7 63 240-304 133-206 (260)
456 TIGR02113 coaC_strep phosphopa 21.1 1.9E+02 0.0041 25.0 4.8 34 240-273 2-36 (177)
457 cd03798 GT1_wlbH_like This fam 21.1 5.6E+02 0.012 22.8 8.4 43 275-320 264-306 (377)
458 cd06066 H2MP_NAD-link-bidir En 21.0 2.3E+02 0.005 23.2 5.2 52 243-298 2-58 (139)
459 PRK05452 anaerobic nitric oxid 20.9 6.1E+02 0.013 25.5 9.1 71 239-313 252-327 (479)
460 PRK06718 precorrin-2 dehydroge 20.8 3.3E+02 0.0072 23.9 6.5 33 237-272 9-41 (202)
461 TIGR01292 TRX_reduct thioredox 20.8 1.4E+02 0.003 27.0 4.2 29 240-271 2-30 (300)
462 PRK12810 gltD glutamate syntha 20.8 1.3E+02 0.0029 30.0 4.4 33 237-272 142-174 (471)
463 PF01910 DUF77: Domain of unkn 20.8 1.9E+02 0.0041 22.2 4.3 48 241-288 3-54 (92)
464 TIGR03301 PhnW-AepZ 2-aminoeth 20.8 5.7E+02 0.012 23.5 8.6 28 278-305 142-169 (355)
465 cd04795 SIS SIS domain. SIS (S 20.7 1.5E+02 0.0032 21.3 3.7 31 241-271 1-32 (87)
466 cd05013 SIS_RpiR RpiR-like pro 20.7 1.9E+02 0.0041 22.5 4.6 34 237-270 12-45 (139)
467 cd03031 GRX_GRX_like Glutaredo 20.6 1.8E+02 0.004 24.4 4.5 66 249-318 15-85 (147)
468 PF01488 Shikimate_DH: Shikima 20.5 1.5E+02 0.0033 24.0 4.0 32 237-271 11-43 (135)
469 PRK08327 acetolactate synthase 20.5 3.1E+02 0.0066 28.2 7.0 148 36-204 384-563 (569)
470 COG4274 Uncharacterized conser 20.5 3.7E+02 0.0079 21.3 5.7 47 239-289 56-102 (104)
471 PRK00676 hemA glutamyl-tRNA re 20.4 2.4E+02 0.0053 27.2 5.8 54 237-294 173-231 (338)
472 PRK06975 bifunctional uroporph 20.2 8.8E+02 0.019 25.6 10.4 56 259-318 94-163 (656)
473 PRK03620 5-dehydro-4-deoxygluc 20.0 2.2E+02 0.0048 26.7 5.5 34 264-298 132-165 (303)
474 PF03808 Glyco_tran_WecB: Glyc 20.0 3E+02 0.0064 23.4 5.8 59 242-300 50-111 (172)
475 PRK12436 UDP-N-acetylenolpyruv 20.0 1.6E+02 0.0034 27.9 4.4 29 177-205 39-67 (305)
476 cd00862 ProRS_anticodon_zinc P 20.0 4.5E+02 0.0098 23.0 7.2 57 240-298 12-76 (202)
477 TIGR01162 purE phosphoribosyla 20.0 4.4E+02 0.0095 22.5 6.7 66 243-311 4-73 (156)
No 1
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=100.00 E-value=3.1e-70 Score=523.08 Aligned_cols=301 Identities=87% Similarity=1.291 Sum_probs=277.4
Q ss_pred ccccc-ccccccccCcccccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHH
Q 020510 18 ARIRP-VVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGF 96 (325)
Q Consensus 18 ~~~~~-~~~~~~~~~~~~~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~ 96 (325)
-|||| ..+--+.|+...+++++|++|+++|.+++++|++++++++|++.++++|+.+++|.++|+|+||||+||+||+|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aL~e~~~~d~~iv~i~~D~~~~~g~~~~~~~l~~~~~P~R~~d~GIAEq~~ 86 (356)
T PLN02683 7 RRTRPAAAAAARGYASAAKEMTVRDALNSALDEEMSADPKVFIMGEEVGEYQGAYKITKGLLQKYGPDRVLDTPITEAGF 86 (356)
T ss_pred cCccccccccCcccCccccccHHHHHHHHHHHHHHhhCcCEEEEccccccccCccchhhhHHHHhCCCcEEECchhHHHH
Confidence 46777 45667889998788999999999999999999999999999988888888888999999999999999999999
Q ss_pred HHHHHHHhccCCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCCcchHHHHHHhcCCCc
Q 020510 97 TGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGL 176 (325)
Q Consensus 97 vg~A~GlA~~G~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tHs~~~~a~~~~iP~~ 176 (325)
+|+|+|||++|+|||++++++||++|+||||++++|+++||+|++.++||++++++|...+.|+||++.++++||+||||
T Consensus 87 vg~AaGlA~~G~~P~v~~~~~~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~G~~~g~G~tH~~~~~a~lr~iPnl 166 (356)
T PLN02683 87 TGIGVGAAYAGLKPVVEFMTFNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCFAAWYSSVPGL 166 (356)
T ss_pred HHHHHHHHHCCCEEEEEEehhhHHHHHHHHHHHHHHHhccccCCCccCCEEEEEeCCCCCCCCCccccCHHHHHhcCCCC
Confidence 99999999999999999988999999999999999999999999999999999988777778999988878999999999
Q ss_pred EEEeeCCHHHHHHHHHHhHhCCCcEEEEeCccccCcccCccccccCCCccccCCceEEeeeCCcEEEEEechhHHHHHHH
Q 020510 177 KVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKA 256 (325)
Q Consensus 177 ~V~~P~d~~e~~~~l~~a~~~~~Pv~ir~~~~l~~~~~p~~~~~~~~~~~~~~gk~~vl~~G~dv~Iia~G~~~~~a~~A 256 (325)
+|++|+|+.|++.+++++++.++|+|||+++.+++..+|...+..++++.+++|+++++++|+|++||++|+++++|++|
T Consensus 167 ~V~~Pad~~e~~~~l~~a~~~~gPv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~r~G~dvtIia~G~~v~~Al~A 246 (356)
T PLN02683 167 KVLAPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFVLPIGKAKIEREGKDVTIVAFSKMVGYALKA 246 (356)
T ss_pred EEEEeCCHHHHHHHHHHHHhCCCcEEEEEehhhccCCCCCCCCCCCccccccCCeeEEEEcCCCEEEEEccHHHHHHHHH
Confidence 99999999999999999999899999998877766554432222233567889999999999999999999999999999
Q ss_pred HHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcCCCc
Q 020510 257 AEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFPPAW 318 (325)
Q Consensus 257 a~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~~~~ 318 (325)
++.|+++||+++|||++||||||++.|.++++++++|+|+|||+..||||++|++.+.|++|
T Consensus 247 a~~L~~~GI~v~VId~~~ikPlD~~~l~~~~~~t~~vvtvEE~~~~GGlGs~Va~~l~e~~f 308 (356)
T PLN02683 247 AEILAKEGISAEVINLRSIRPLDRDTINASVRKTNRLVTVEEGWPQHGVGAEICASVVEESF 308 (356)
T ss_pred HHHHHhcCCCEEEEECCCCCccCHHHHHHHHhhcCeEEEEeCCCcCCCHHHHHHHHHHHhch
Confidence 99999999999999999999999999999999999999999999999999999999999875
No 2
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=100.00 E-value=1.1e-69 Score=514.52 Aligned_cols=279 Identities=43% Similarity=0.778 Sum_probs=262.2
Q ss_pred ccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCC-ceeechhhHHHHHHHHHHHhccCCeeEEe
Q 020510 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPE-RVLDTPITEAGFTGIGVGAAYYGLKPVVE 113 (325)
Q Consensus 35 ~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~-R~i~~GIaE~~~vg~A~GlA~~G~~p~v~ 113 (325)
+++++|++|+++|.+++++||+++++++|++..+|+++.+++|+++| |+ ||||+||+||+|+|+|+|||++|++||++
T Consensus 2 ~~~~~~~a~~~~L~~~~~~dp~iv~l~~d~~~~~g~~~~~~~f~~~f-p~~R~~n~gIaEq~~vg~AaGlA~~G~~pvv~ 80 (327)
T CHL00144 2 SEVFLFEALREAIDEEMARDPRVFVIGEDVGHYGGSYKVTKGLHEKY-GDLRVLDTPIAENSFTGMAIGAAMTGLRPIVE 80 (327)
T ss_pred CcchHHHHHHHHHHHHHhhCCCEEEEeCcccccCCchhHHHHHHHHC-CCccEeeccccHHHHHHHHHHHHHCCCEEEEE
Confidence 45789999999999999999999999999987777778889999999 77 99999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCCcchHHHHHHhcCCCcEEEeeCCHHHHHHHHHH
Q 020510 114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKA 193 (325)
Q Consensus 114 ~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~ 193 (325)
++++||++|+||||++++|+++|++|++.++|++++++++.+.++|+||||.+|++|++||||+|++|+|+.|++.++++
T Consensus 81 ~~~~~f~~ra~dQi~~~~a~~~~~~gg~~~~~vv~~~~g~~~~~~G~tHs~~~ea~~~~iPgl~V~~Psd~~d~~~~l~~ 160 (327)
T CHL00144 81 GMNMGFLLLAFNQISNNAGMLHYTSGGNFTIPIVIRGPGGVGRQLGAEHSQRLESYFQSVPGLQIVACSTPYNAKGLLKS 160 (327)
T ss_pred eehhhHHHHHHHHHHHHHHHHhhccCCCccCCEEEEecCCCCCCCCccccccHHHHHhcCCCCEEEEeCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999987655557999999988999999999999999999999999999
Q ss_pred hHhCCCcEEEEeCccccCcccCccccccCCCccccCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEee
Q 020510 194 AIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLR 273 (325)
Q Consensus 194 a~~~~~Pv~ir~~~~l~~~~~p~~~~~~~~~~~~~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~ 273 (325)
+++.++|+|||+++.+|+.+ +.++++++.+++||++++++|+|++||++|.++++|++|++.|+++||+++|||++
T Consensus 161 a~~~~~Pv~ire~~~l~~~~----~~v~~~~~~~~~Gk~~v~~~G~ditiia~G~~v~~al~Aa~~L~~~Gi~~~VId~~ 236 (327)
T CHL00144 161 AIRSNNPVIFFEHVLLYNLK----EEIPDNEYLLPLEKAEVVRPGNDITILTYSRMRHHVLQAVKVLVEKGYDPEIIDLI 236 (327)
T ss_pred HHhCCCcEEEEEcHHhcCCC----CCCCCCCccccCCeeEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 99999999999999887642 33555667889999999999999999999999999999999999999999999999
Q ss_pred eccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcCCCc
Q 020510 274 SIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFPPAW 318 (325)
Q Consensus 274 ~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~~~~ 318 (325)
||||||+++|.++++++++|||+|||+..||+|++|++.+.+++|
T Consensus 237 ~ikPlD~~~i~~~~~~t~~vv~vEE~~~~gGlG~~va~~l~e~~f 281 (327)
T CHL00144 237 SLKPLDLGTISKSVKKTHKVLIVEECMKTGGIGAELIAQINEHLF 281 (327)
T ss_pred cCCCCCHHHHHHHHHhhCcEEEEECCCCCCCHHHHHHHHHHHhch
Confidence 999999999999999999999999999999999999999999875
No 3
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=100.00 E-value=7.6e-69 Score=487.80 Aligned_cols=280 Identities=54% Similarity=0.850 Sum_probs=270.0
Q ss_pred cccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEecc
Q 020510 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFM 115 (325)
Q Consensus 36 ~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~ 115 (325)
++++++|++++|.+.|++|++|+++++|++..+|+|++|.+|.++||++|++|++|+|.+.+|+|.|||+.|+||+++++
T Consensus 1 ~~~~~eAi~~Am~~eM~rD~~V~v~GEDVg~~GGvf~~T~GL~~kfG~~RV~DTPiaE~gi~G~avGaA~~GlrPivEiq 80 (324)
T COG0022 1 QMTMIEAINEAMDEEMERDERVVVLGEDVGVYGGVFRVTKGLQEKFGEERVIDTPIAESGIAGIAVGAALTGLRPIVEIQ 80 (324)
T ss_pred CccHHHHHHHHHHHHHhcCCCEEEEcccccccCChhhhchhHHHHhCccceecCccchhhhHHHHHHHHHcCCcceEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCCcchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhH
Q 020510 116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAI 195 (325)
Q Consensus 116 ~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~ 195 (325)
+.+|+..++|||.|++++.+||+||+.++|++++++.|.+.+.|.+|||+.+++|.++||++|++|++|.|++.+|+.|+
T Consensus 81 f~dF~~~a~dqi~n~aAk~ryrsgG~~~~PiviR~p~G~g~~~~~~HSqs~ea~f~h~PGlKVV~PStpyDAKGLL~aAI 160 (324)
T COG0022 81 FADFIYPAFDQIVNQAAKIRYRSGGQFTVPIVIRTPNGGGIGGGAQHSQSLEALFAHIPGLKVVMPSTPYDAKGLLKAAI 160 (324)
T ss_pred ecchhHHHHHHHHHHHHHHhhhcCCceeCCEEEEcCCCCCCCchhhccCCHHHHHhcCCCceEEecCChHHHHHHHHHHh
Confidence 99999999999999999999999999999999999987777788999999999999999999999999999999999999
Q ss_pred hCCCcEEEEeCccccCcccCccccccCCCccccCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeec
Q 020510 196 RDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSI 275 (325)
Q Consensus 196 ~~~~Pv~ir~~~~l~~~~~p~~~~~~~~~~~~~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l 275 (325)
++++||++.+++.+|+. .+.++|+++|.+++||+++.|+|+|+|||+||.|++.+++||++|+++||+++|||+|||
T Consensus 161 rd~dPViflE~k~lY~~---~~~eVP~~~Y~iPlGkA~i~reG~DvTivtyg~mv~~al~AAe~l~~~Gis~EVIDLRTl 237 (324)
T COG0022 161 RDPDPVIFLEHKRLYRS---FKGEVPEEDYTIPLGKAKIVREGSDVTIVTYGAMVHTALEAAEELEKEGISAEVIDLRTL 237 (324)
T ss_pred cCCCCEEEEecHHHhcc---cccCCCCCCccccccceeeEecCCceEEEEechHHHHHHHHHHHHhhcCCCeEEEecccc
Confidence 99999999999999974 235778899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcCCCc
Q 020510 276 RPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFPPAW 318 (325)
Q Consensus 276 ~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~~~~ 318 (325)
+|+|.++|.++++||+|+++|||.+..+|+|++|++.++|++|
T Consensus 238 ~PlD~etIi~SvkKTgR~viV~Ea~~~~g~gaei~A~i~e~~f 280 (324)
T COG0022 238 SPLDKETIIASVKKTGRLVIVHEAPKTGGIGAEIAALIAEEAF 280 (324)
T ss_pred CccCHHHHHHHHHhhCcEEEEEeccccCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988765
No 4
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=100.00 E-value=6.2e-68 Score=503.07 Aligned_cols=281 Identities=68% Similarity=1.087 Sum_probs=264.3
Q ss_pred ccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEec
Q 020510 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEF 114 (325)
Q Consensus 35 ~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~ 114 (325)
++++++++|+++|.+++++|++++++++|++.++|.|+++.+|+++|||+||||+||+||+|+++|+|||++|++||+++
T Consensus 2 ~~~~~~~a~~~~L~~~~~~d~~iv~l~~d~~~~~g~~~~~~~~~~~fgp~R~~d~gIaE~~~vg~AaGlA~~G~~Piv~~ 81 (327)
T PRK09212 2 AQLTVREALRDAMQEEMERDPKVFLMGEEVGEYQGAYKVTQGLLEQFGPKRVIDTPITEHGFAGLAVGAAFAGLRPIVEF 81 (327)
T ss_pred CcchHHHHHHHHHHHHHHhCCCEEEEcCcccccCCcchhhHHHHHHhCCCceeecchhHHHHHHHHHHHHHcCCeeEEEe
Confidence 56799999999999999999999999999988888899999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCCcchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHh
Q 020510 115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAA 194 (325)
Q Consensus 115 ~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a 194 (325)
+++||++||||||++++|+++||+|++.++|+++++++|.++++|+||||+++++||++|||+|++|+|+.|++.+++++
T Consensus 82 ~~~~f~~ra~dQi~~d~a~~~~~~~~~~~v~vv~~~~~g~~~~~G~tH~~~~ea~~r~iP~l~V~~P~d~~e~~~~l~~a 161 (327)
T PRK09212 82 MTFNFSMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPNGAAARVAAQHSQCYAAWYSHIPGLKVVAPYFAADCKGLLKTA 161 (327)
T ss_pred ehhhHHHHHHHHHHHHHHHHhhccCCCcCccEEEEeCCCCCCCCCcccccCHHHHHhcCCCCEEEeeCCHHHHHHHHHHH
Confidence 97799999999999999999999999999999999988887889999999889999999999999999999999999999
Q ss_pred HhCCCcEEEEeCccccCcccCccccccCCCccccCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeee
Q 020510 195 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRS 274 (325)
Q Consensus 195 ~~~~~Pv~ir~~~~l~~~~~p~~~~~~~~~~~~~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~ 274 (325)
++.++|+||++++..|.. .++++++++.+++||++++++|+|++||+||+++..|++|++.|+++|++++|||+++
T Consensus 162 ~~~~~Pv~i~~~~~~~~~----~~~~~~~~~~~~~Gk~~vl~~G~di~iva~G~~~~~a~eAa~~L~~~Gi~v~vi~~~~ 237 (327)
T PRK09212 162 IRDPNPVIFLENEILYGH----SHEVPEEEESIPIGKAAILREGSDVTIVTFSIQVKLALEAAELLEKEGISVEVIDLRT 237 (327)
T ss_pred HhCCCcEEEEEchhhcCC----CCCCCCCCccccCCeeEEEEeCCCEEEEEccHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 999999999998765542 2334555677899999999999999999999999999999999999999999999999
Q ss_pred ccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcCCCcc
Q 020510 275 IRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFPPAWL 319 (325)
Q Consensus 275 l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~~~~~ 319 (325)
|+|||++.|.++++++++|+|+|||+..||+|++|++.+.++++.
T Consensus 238 l~Pld~~~i~~~~~~~~~vv~vEe~~~~gGlg~~la~~l~~~~~~ 282 (327)
T PRK09212 238 LRPLDTETIIESVKKTNRLVVVEEGWPFAGVGAEIAALIMKEAFD 282 (327)
T ss_pred CCCCCHHHHHHHHHhCCeEEEEcCCCCCCCHHHHHHHHHHHhCcc
Confidence 999999999999999999999999999999999999999988654
No 5
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-68 Score=481.63 Aligned_cols=264 Identities=28% Similarity=0.416 Sum_probs=241.7
Q ss_pred ccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEec
Q 020510 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEF 114 (325)
Q Consensus 35 ~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~ 114 (325)
...++|++|+++|.++.++|++||++++|+..|+.+ ..|+++| ||||+|+||+||+|+|+|+|+|++|++||+++
T Consensus 5 ~~~~~R~~~g~~L~~l~~~~~diVvl~ADl~~St~~----~~f~~~f-PdR~~NvGIaEQ~mvg~AAGLA~~Gk~Pfv~t 79 (312)
T COG3958 5 NTESLRKVYGETLAELGRKNSDIVVLDADLSSSTKT----GYFAKEF-PDRFFNVGIAEQDMVGTAAGLALAGKKPFVST 79 (312)
T ss_pred cchHHHHHHHHHHHHHHhcCCCEEEEecccccccch----hHHHHhC-chhheecchHHHHHHHHHHHHHhcCCCceeec
Confidence 467899999999999999999999999999876654 7899999 99999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC-CCCCC-CCCCcchHHH--HHHhcCCCcEEEeeCCHHHHHHH
Q 020510 115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAG-VGAQHSHCYA--AWYASVPGLKVLSPYSSEDARGL 190 (325)
Q Consensus 115 ~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~~g-~G~tHs~~~~--a~~~~iP~~~V~~P~d~~e~~~~ 190 (325)
|+.|.+.|+||||||++||. +++|.+++.+ |.+.+ +|+|| |++| ++||.+|||+|++|+|+.+++.+
T Consensus 80 fa~F~s~Ra~EQir~~iay~--------~lnVKiv~t~~G~t~g~dG~sH-q~~EDiaimR~lpn~~V~~P~D~v~~~~i 150 (312)
T COG3958 80 FAAFLSRRAWEQIRNSIAYN--------NLNVKIVATHAGVTYGEDGSSH-QALEDIAIMRGLPNMTVIAPADAVETRAI 150 (312)
T ss_pred hHHHHHHHHHHHHHHHhhhc--------cCCeEEEEecCCcccCCCCccc-hhHHHHHHHhcCCCceEEccCcHHHHHHH
Confidence 98877779999999999984 6777777654 77765 99999 7554 99999999999999999999999
Q ss_pred HHHhHhCCCcEEEEeCccccCcccCccccccCCCccccCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEE
Q 020510 191 LKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVI 270 (325)
Q Consensus 191 l~~a~~~~~Pv~ir~~~~l~~~~~p~~~~~~~~~~~~~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi 270 (325)
+.++.++++|+|+|..|. ++| ..++..+|.|++||++++++|+|++||++|.|+++|++||+.|+++||++.||
T Consensus 151 ~~~~~~~~GP~Y~Rl~R~----~~p--~~~~~~~~~F~iGka~vLrdG~D~tiiA~G~mv~~al~AA~~L~~~GIsa~Vi 224 (312)
T COG3958 151 LDQIADYKGPVYMRLGRG----KVP--VVVDEGGYTFEIGKANVLRDGSDLTIIATGVMVAEALEAAEILKKEGISAAVI 224 (312)
T ss_pred HHHHHhcCCCEEEEecCC----CCC--ceecCCCceEeccceeEeecCCceEEEecCcchHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999998774 333 22333468999999999999999999999999999999999999999999999
Q ss_pred EeeeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcCCCc
Q 020510 271 NLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFPPAW 318 (325)
Q Consensus 271 ~~~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~~~~ 318 (325)
|+.||||+|++.+.++++++++|||+|||+..||||+.|++.|.|++.
T Consensus 225 ~m~tIKPiD~~~i~~~A~~t~~IvT~EeHsi~GGlGsaVAEvlse~~p 272 (312)
T COG3958 225 NMFTIKPIDEQAILKAARETGRIVTAEEHSIIGGLGSAVAEVLSENGP 272 (312)
T ss_pred ecCccCCCCHHHHHHHHhhcCcEEEEecceeecchhHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999876
No 6
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=100.00 E-value=8.3e-67 Score=512.97 Aligned_cols=281 Identities=69% Similarity=1.082 Sum_probs=263.9
Q ss_pred cccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEe
Q 020510 34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVE 113 (325)
Q Consensus 34 ~~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~ 113 (325)
++++++|++|+++|.+++++|++++++++|++.++|.|+++.+|.++|||+||||+||+||+|+|+|+|||++|+|||++
T Consensus 139 ~~~~~~r~a~~~al~~~~~~d~~vv~i~~Dv~~~~ga~~~t~~l~~~fgp~R~id~gIaEq~~vg~AaGlA~~G~rPiv~ 218 (464)
T PRK11892 139 MVTMTVREALRDAMAEEMRRDEDVFVMGEEVAEYQGAYKVTQGLLQEFGARRVIDTPITEHGFAGIGVGAAFAGLKPIVE 218 (464)
T ss_pred ccchHHHHHHHHHHHHHHhhCcCEEEEeCCccccCCccccchHHHHHhCccceeecCccHHHHHHHHHHHHhCCCEEEEE
Confidence 36778999999999999999999999999999888888888999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCCcchHHHHHHhcCCCcEEEeeCCHHHHHHHHHH
Q 020510 114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKA 193 (325)
Q Consensus 114 ~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~ 193 (325)
++++||++|+||||+|++|+++||+|+++++||++++++|...+.|++|+++++++|++||||+|++|+|+.|++.++++
T Consensus 219 ~~~~~f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~~G~hhs~~d~a~~~~iPgl~V~~P~d~~d~~~ll~~ 298 (464)
T PRK11892 219 FMTFNFAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAARVAAQHSQDYAAWYSHIPGLKVVAPYSAADAKGLLKA 298 (464)
T ss_pred EehHHHHHHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCCCCCccccCHHHHHhhCCCCEEEEeCCHHHHHHHHHH
Confidence 99899999999999999999999999999999999998877666889898999999999999999999999999999999
Q ss_pred hHhCCCcEEEEeCccccCcccCccccccC-CCccccCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEe
Q 020510 194 AIRDPDPVVFLENELLYGESFPVSAEVLD-SSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINL 272 (325)
Q Consensus 194 a~~~~~Pv~ir~~~~l~~~~~p~~~~~~~-~~~~~~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~ 272 (325)
+++.++|+|+++++.+|++.. +++. +++.+++||++++++|+|++||++|.+++.|++|++.|+++||+++|||+
T Consensus 299 ai~~~~Pv~ile~~~ry~~~~----~vp~~~~~~~~~Gka~v~r~G~DvtIva~G~~v~~Al~Aa~~L~~~GI~~~VIdl 374 (464)
T PRK11892 299 AIRDPNPVIFLENEILYGQSF----DVPKLDDFVLPIGKARIHREGKDVTIVSFSIGMTYALKAAEELAKEGIDAEVIDL 374 (464)
T ss_pred HhhCCCcEEEEechhhcCCCC----CCCCcCCccccCceEEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 999999999999887776532 1222 45778899999999999999999999999999999999999999999999
Q ss_pred eeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcCCCc
Q 020510 273 RSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFPPAW 318 (325)
Q Consensus 273 ~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~~~~ 318 (325)
+||||||+++|.++++++++|||+|||+..||||++|++.+.+++|
T Consensus 375 ~tlkPlD~~~i~~sv~kt~~vvtvEE~~~~gGlG~~va~~l~e~~f 420 (464)
T PRK11892 375 RTIRPMDTETIVESVKKTNRLVTVEEGWPQSGVGAEIAARVMEQAF 420 (464)
T ss_pred CCCCcCCHHHHHHHHHhcCeEEEEeCCCcCCcHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999999999999999876
No 7
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=100.00 E-value=1e-65 Score=491.83 Aligned_cols=283 Identities=58% Similarity=0.932 Sum_probs=262.5
Q ss_pred ccccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEE
Q 020510 33 AVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVV 112 (325)
Q Consensus 33 ~~~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v 112 (325)
.+++++++++|+++|.+++++|++++++++|++.++++++.+.+|+++|||+||||+||+||+|+++|+|||++|++||+
T Consensus 31 ~~~~~~~~~~~~~~L~~~~~~d~~iv~l~~D~~~~G~~~~~~~~f~~~fgP~R~id~GIaEq~~vg~AaGlA~~G~~Pvv 110 (355)
T PTZ00182 31 ATVKMNVREAINSALDEELARDPKVFVLGEDVAQYGGVYKCTKGLLDKYGPDRVFDTPITEQGFAGFAIGAAMNGLRPIA 110 (355)
T ss_pred cccchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCchhhhHHHHHHhCCCceeecCccHHHHHHHHHHHHhCCCEEEE
Confidence 34688999999999999999999999999999877777887899999999999999999999999999999999999999
Q ss_pred ecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCCcchHHHHHHhcCCCcEEEeeCCHHHHHHHHH
Q 020510 113 EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLK 192 (325)
Q Consensus 113 ~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~ 192 (325)
++++++|++|++|||++++|+++|++|+++++|+++++++|..+++|+||+|.++++|+++|||+|++|+|+.|++.+++
T Consensus 111 ~~~fa~Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~~g~~G~tHs~~~ea~lr~iPn~~V~~Psd~~e~~~~l~ 190 (355)
T PTZ00182 111 EFMFADFIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAVGHGGAYHSQSFEAYFAHVPGLKVVAPSDPEDAKGLLK 190 (355)
T ss_pred EechhhHHHHHHHHHHHHHHHhhcccCCCccCCEEEEeCCCCCCCCCCcccchHHHHHhcCCCCEEEeeCCHHHHHHHHH
Confidence 98768889999999999999999999999999999998766667799999999999999999999999999999999999
Q ss_pred HhHhCCCcEEEEeCccccCcccCccccccCCCccccCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEe
Q 020510 193 AAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINL 272 (325)
Q Consensus 193 ~a~~~~~Pv~ir~~~~l~~~~~p~~~~~~~~~~~~~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~ 272 (325)
++++.++|+||++++.+++...+ .++++++.+++||++++++|+|++||++|+++..+++|++.|+++|++++|||+
T Consensus 191 ~a~~~~~P~~i~~p~~l~r~~~~---~~~~~~~~~~~Gk~~vl~~G~di~Iia~Gs~~~~aleAa~~L~~~Gi~v~vI~~ 267 (355)
T PTZ00182 191 AAIRDPNPVVFFEPKLLYRESVE---VVPEADYTLPLGKAKVVREGKDVTIVGYGSQVHVALKAAEELAKEGISCEVIDL 267 (355)
T ss_pred HHHhCCCcEEEEeehHHhCCCCC---CCCcccccccCCcceEecCCCCEEEEEeCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 99999999999999887754322 223445778899999999999999999999999999999999999999999999
Q ss_pred eeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcCCCc
Q 020510 273 RSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFPPAW 318 (325)
Q Consensus 273 ~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~~~~ 318 (325)
++++|||++.|.++++++++|||+|||+..||||++|++.+.|++|
T Consensus 268 ~~l~Pld~e~i~~~~~~~~~IvvvEE~~~~GGlG~~Va~~l~e~~~ 313 (355)
T PTZ00182 268 RSLRPWDRETIVKSVKKTGRCVIVHEAPPTCGIGAEIAAQIMEDCF 313 (355)
T ss_pred eeCCCCCHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999874
No 8
>KOG0524 consensus Pyruvate dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=100.00 E-value=8.4e-62 Score=432.25 Aligned_cols=285 Identities=70% Similarity=1.109 Sum_probs=275.0
Q ss_pred cccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEe
Q 020510 34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVE 113 (325)
Q Consensus 34 ~~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~ 113 (325)
.+.++.|+|+..+|.+.|++|++++++++|++.++|+|+++++|.+|||+.|++|++|+|.+..|+|.|+|+.|+||+++
T Consensus 32 ~~~mtvreALn~amdEEm~rD~~VfvmGEeV~qy~GaykvtkGL~~K~G~~RV~DTPItE~gFtG~avGAA~~GLrPi~e 111 (359)
T KOG0524|consen 32 AKEMTVREALNQAMDEEMDRDPRVFVMGEEVGQYGGAYKVTKGLLDKFGDKRVLDTPITEMGFTGIAVGAAMAGLRPICE 111 (359)
T ss_pred ceeeeHHHHHHHHHHHHhccCCcEEEechhhhhcCCeeehhhhHHHhcCCceeecCcchhcccchhhHhHHHhCcchhhh
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCCcchHHHHHHhcCCCcEEEeeCCHHHHHHHHHH
Q 020510 114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKA 193 (325)
Q Consensus 114 ~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~ 193 (325)
.+.-.|++.++|||.|++++.+|||||++++|+++++++|...+.|.+|||++.+|+.++||++|++|.+++|++.+++.
T Consensus 112 fMtfnFsmqAid~IiNsaakt~YmSgG~~~~piVfRGPnG~~~gv~AqHSQ~f~~wy~siPGlkvvapysaedakGLlKa 191 (359)
T KOG0524|consen 112 FMTFNFSMQAIDQIINSAAKTHYMSGGQQPVPIVFRGPNGAAAGVAAQHSQDFASWYGSIPGLKVVAPYSAEDAKGLLKA 191 (359)
T ss_pred hhcchhHHHHHHHHHHHHHHHhcccCCceeccEEEeCCCCcccchhhhhhhhhHHHhccCCCceEeccCChhhhhhHHHH
Confidence 98778999999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred hHhCCCcEEEEeCccccCcccCccccccCCCccccCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEee
Q 020510 194 AIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLR 273 (325)
Q Consensus 194 a~~~~~Pv~ir~~~~l~~~~~p~~~~~~~~~~~~~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~ 273 (325)
|+++++||++.++..+|+..+++.++....+|..++||+++.|+|+|++|+++..++..+++||+.|.++|++++|||++
T Consensus 192 AIRd~NPVV~lEnelLYg~~f~i~~E~ls~~fv~p~gkAkier~G~~iTivt~Sr~v~~~leAA~~L~~~Gvs~EVInlr 271 (359)
T KOG0524|consen 192 AIRDENPVVFLENELLYGLSFEIPEEALSKDFVLPLGKAKIEREGTHITIVTYSRMVGHCLEAAETLVAKGVSAEVINLR 271 (359)
T ss_pred hccCCCCeEEEechhhcCCCccCChhhcCcceeeeccceeeeecCCceEEEEechhHHHHHHHHHHHHhcCCCceeEeee
Confidence 99999999999999999988877666556789999999999999999999999999999999999999999999999999
Q ss_pred eccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcCCCc
Q 020510 274 SIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFPPAW 318 (325)
Q Consensus 274 ~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~~~~ 318 (325)
+|+|||.++|.++++||.++++||+.++.+|+|++|++.++|+.|
T Consensus 272 SirP~D~~tI~~Sv~KT~~lvtVe~~~p~~gigaei~A~i~E~~f 316 (359)
T KOG0524|consen 272 SIRPFDIETIGASVKKTNRLVTVEEGWPQFGIGAEICAQIMENAF 316 (359)
T ss_pred ccCcccHHHHHHHHhhhceEEEEeccccccchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998644
No 9
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=9.2e-59 Score=469.60 Aligned_cols=265 Identities=20% Similarity=0.299 Sum_probs=233.4
Q ss_pred ccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEec
Q 020510 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEF 114 (325)
Q Consensus 35 ~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~ 114 (325)
...+++++|+++|.+++++|++||++++|+...++ +.+|+++| |+||||+|||||+|+++|+|||..|++||+++
T Consensus 379 ~~~s~~~~f~~aL~~la~~D~~Iv~Itadm~~gtg----l~~f~~~f-PdRffDvGIAEQhaVt~AAGLA~~G~kPvv~i 453 (701)
T PLN02225 379 DRRTYSDCFVEALVMEAEKDRDIVVVHAGMEMDAS----LITFQERF-PDRFFNVGMAEQHAVTFSAGLSSGGLKPFCII 453 (701)
T ss_pred CCcCHHHHHHHHHHHHHhhCCCEEEEeCCccCccc----HHHHHHHc-cccccccCccHHHHHHHHHHHHHCCCEEEEEe
Confidence 35689999999999999999999999999864222 38999999 99999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC-CCCCCCCCCcch-HHHHHHhcCCCcEEEeeCCHHHHHHHHH
Q 020510 115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAGVGAQHSH-CYAAWYASVPGLKVLSPYSSEDARGLLK 192 (325)
Q Consensus 115 ~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~~g~G~tHs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~ 192 (325)
| +.|++||||||++++|++ +.||+++... |..+.+|+||++ .+.++||+||||+|++|+|++|++.+++
T Consensus 454 y-stFlqRAyDQI~~Dval~--------~lpV~~vid~aGlvg~DG~TH~g~~Dia~lr~IPnm~V~aPsD~~El~~mL~ 524 (701)
T PLN02225 454 P-SAFLQRAYDQVVHDVDRQ--------RKAVRFVITSAGLVGSDGPVQCGAFDIAFMSSLPNMIAMAPADEDELVNMVA 524 (701)
T ss_pred e-hhHHHHHHHHHHHHHHhh--------cCCceEEEECCccCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHH
Confidence 8 678999999999999984 6677776654 555569999965 4459999999999999999999999999
Q ss_pred HhHh-CCCcEEEEeCccccCcccCccccccCCCccccCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEE
Q 020510 193 AAIR-DPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVIN 271 (325)
Q Consensus 193 ~a~~-~~~Pv~ir~~~~l~~~~~p~~~~~~~~~~~~~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~ 271 (325)
+++. .++|+|||.+|..+.. .+...++++.+++||++++++|+|++||++|.+++.|++|++.|+++||+++|||
T Consensus 525 ~A~~~~~gPv~IR~pRg~~~~----~~~~~~~~~~~~iGK~~vlreG~dvtIia~G~mv~~Al~AA~~L~~~GI~vtVId 600 (701)
T PLN02225 525 TAAYVTDRPVCFRFPRGSIVN----MNYLVPTGLPIEIGRGRVLVEGQDVALLGYGAMVQNCLHAHSLLSKLGLNVTVAD 600 (701)
T ss_pred HHHhcCCCCEEEEecccccCC----CCcCCCCCccccCcceEEEEeCCCEEEEeccHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9885 5689999998763211 1100122467889999999999999999999999999999999999999999999
Q ss_pred eeeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcCCCc
Q 020510 272 LRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFPPAW 318 (325)
Q Consensus 272 ~~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~~~~ 318 (325)
++++||||++.|.++++++++|||+|||.. ||||+.|++++.++++
T Consensus 601 lr~ikPLD~e~I~~~~~k~~~vVTvEE~~~-GG~Gs~Va~~l~~~~~ 646 (701)
T PLN02225 601 ARFCKPLDIKLVRDLCQNHKFLITVEEGCV-GGFGSHVAQFIALDGQ 646 (701)
T ss_pred cCCCCCCCHHHHHHHHhhcCeEEEEcCCCC-CchHHHHHHHHHhcCC
Confidence 999999999999999999999999999997 9999999999998875
No 10
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=100.00 E-value=1.5e-56 Score=438.25 Aligned_cols=267 Identities=25% Similarity=0.361 Sum_probs=239.9
Q ss_pred ccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEec
Q 020510 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEF 114 (325)
Q Consensus 35 ~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~ 114 (325)
.+.||.++|++.|.+++++|++||.+++ ++..|+ ++ .+|+++| |+||||+|||||++|++|+|||..|++|++++
T Consensus 314 ~~~sys~vf~~~L~~~a~~d~~ivaITa--AM~~gt-GL-~~F~~~f-P~R~fDVGIAEQHAVT~AAGlA~~G~kPvvaI 388 (627)
T COG1154 314 SAPSYTKVFGDTLCELAAKDEKIVAITA--AMPEGT-GL-VKFSKKF-PDRFFDVGIAEQHAVTFAAGLAAEGMKPVVAI 388 (627)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEec--CCCCCC-Ch-HHHHHhC-chhheehhhhHHHHHHHHHHHHhCCCCCEEEE
Confidence 5677999999999999999999999999 455565 55 7999999 99999999999999999999999999999998
Q ss_pred ccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC-CCCCCCCCCcch-HHHHHHhcCCCcEEEeeCCHHHHHHHHH
Q 020510 115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAGVGAQHSH-CYAAWYASVPGLKVLSPYSSEDARGLLK 192 (325)
Q Consensus 115 ~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~~g~G~tHs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~ 192 (325)
| |+|+||||||+.+|+|. +|+||++.... |..+.+|.||+. .|.++||+||||+|++|+|.+|++.+++
T Consensus 389 Y-STFLQRAYDQliHDvai--------qnLPV~faIDRAGivG~DG~TH~G~fDls~l~~iPnmvi~aP~de~el~~ml~ 459 (627)
T COG1154 389 Y-STFLQRAYDQLIHDVAI--------QNLPVTFAIDRAGIVGADGPTHQGLFDLSFLRCIPNMVIMAPRDEEELRQMLY 459 (627)
T ss_pred e-cHHHHHHHHHHHHHHHh--------ccCCeEEEEecCcccCCCCCccccHHHHHHHhcCCCcEEecCCCHHHHHHHHH
Confidence 7 89999999999999997 79999998874 777889999965 4459999999999999999999999999
Q ss_pred HhHhCC-CcEEEEeCccccCcccCccccccCCCccccCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEE
Q 020510 193 AAIRDP-DPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVIN 271 (325)
Q Consensus 193 ~a~~~~-~Pv~ir~~~~l~~~~~p~~~~~~~~~~~~~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~ 271 (325)
+++..+ +|+.||.||.. .+. .....+...+++|+++++++|.|++||++|.++..|++|++.|.+.||+++|||
T Consensus 460 ta~~~~~gP~AiRyPrg~----~~~-~~~~~~~~~~~~Gk~~i~~~G~~vail~~G~~~~~al~vae~L~~~Gi~~TVvd 534 (627)
T COG1154 460 TALAQDDGPVAIRYPRGN----GVG-VILTPELEPLEIGKGELLKEGEKVAILAFGTMLPEALKVAEKLNAYGISVTVVD 534 (627)
T ss_pred HHHhcCCCCeEEEecCCC----CCC-CCcccccccccccceEEEecCCcEEEEecchhhHHHHHHHHHHHhcCCCcEEEc
Confidence 999987 79999987651 110 011111345789999999999999999999999999999999999999999999
Q ss_pred eeeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcCCCccc
Q 020510 272 LRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFPPAWLI 320 (325)
Q Consensus 272 ~~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~~~~~~ 320 (325)
++++||+|++.|++++++++.+||+||+...||+||.|+++|.++++..
T Consensus 535 ~rfvkPlD~~ll~~La~~h~~~vtlEe~~~~GG~Gs~v~efl~~~~~~~ 583 (627)
T COG1154 535 PRFVKPLDEALLLELAKSHDLVVTLEENVVDGGFGSAVLEFLAAHGILV 583 (627)
T ss_pred CeecCCCCHHHHHHHHhhcCeEEEEecCcccccHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999999999999999999988754
No 11
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=100.00 E-value=3.4e-56 Score=453.76 Aligned_cols=264 Identities=24% Similarity=0.373 Sum_probs=237.1
Q ss_pred ccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEec
Q 020510 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEF 114 (325)
Q Consensus 35 ~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~ 114 (325)
...+++++|+++|.+++++|++||++++|+..+++ +.+|+++| |+||||+||+||+|+++|+|||+.|++||+++
T Consensus 308 ~~~~~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~----~~~f~~~f-P~R~~d~GIaEq~~vg~AaGlA~~G~~Pvv~~ 382 (617)
T TIGR00204 308 ALPSYSKIFSDTLCELAKKDNKIVGITPAMPEGSG----LDKFSRKF-PDRYFDVAIAEQHAVTFAAGMAIEGYKPFVAI 382 (617)
T ss_pred CCccHHHHHHHHHHHHHhhCcCEEEEECCccCCcC----hHHHHHHC-ccccccCCccHHHHHHHHHHHHHCCCEEEEEe
Confidence 34689999999999999999999999999854333 38999999 99999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC-CCCCCCCCCcchHHH-HHHhcCCCcEEEeeCCHHHHHHHHH
Q 020510 115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAGVGAQHSHCYA-AWYASVPGLKVLSPYSSEDARGLLK 192 (325)
Q Consensus 115 ~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~~g~G~tHs~~~~-a~~~~iP~~~V~~P~d~~e~~~~l~ 192 (325)
| +.|++||||||++++|+ +++||++++++ |..+++|+||++..+ ++|+++|||+|++|+|+.|++.+++
T Consensus 383 ~-a~Fl~ra~dQi~~~~a~--------~~lpV~i~~~~~G~~g~dG~tH~~~~dia~lr~iPgl~V~~Psd~~e~~~~l~ 453 (617)
T TIGR00204 383 Y-STFLQRAYDQVVHDVCI--------QKLPVLFAIDRAGIVGADGETHQGAFDISYLRCIPNMVIMAPSDENELRQMLY 453 (617)
T ss_pred c-HHHHHHHHHHHHHHHHh--------cCCCEEEEEECCCcCCCCCcccccchHHHHHhcCCCcEEEeeCCHHHHHHHHH
Confidence 6 77889999999999997 58999999874 666668999976554 9999999999999999999999999
Q ss_pred HhHhCC-CcEEEEeCccccCcccCccccccCCCccccCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEE
Q 020510 193 AAIRDP-DPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVIN 271 (325)
Q Consensus 193 ~a~~~~-~Pv~ir~~~~l~~~~~p~~~~~~~~~~~~~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~ 271 (325)
++++.+ +|+|+|++|..+.. . .....++.+++|+++++++|+|++||++|.+++.|++|++.|+++||+++|||
T Consensus 454 ~a~~~~~~Pv~ir~~r~~~~~----~-~~~~~~~~~~~Gk~~vlr~G~dvtIva~G~~v~~al~Aa~~L~~~gi~~~VId 528 (617)
T TIGR00204 454 TGYHYDDGPIAVRYPRGNAVG----V-ELTPEPEKLPIGKSEVLRKGEKILILGFGTLVPEALEVAESLNEKGIEATVVD 528 (617)
T ss_pred HHHhCCCCCEEEEEccCCcCC----c-ccCCccccccCCceEEEEcCCCEEEEEcCHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999965 99999998763311 0 11123467889999999999999999999999999999999999999999999
Q ss_pred eeeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcCCC
Q 020510 272 LRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFPPA 317 (325)
Q Consensus 272 ~~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~~~ 317 (325)
++||+|||++.|.++++++++|||+|||+..||+|++|+++|.+++
T Consensus 529 ~~~lkPlD~e~i~~~~~k~~~vvtvEE~~~~GGlGs~v~~~l~~~~ 574 (617)
T TIGR00204 529 ARFVKPLDEELILEIAASHEKLVTVEENAIMGGAGSAVLEFLMDQN 574 (617)
T ss_pred cCcCCcCCHHHHHHHHhhcCeEEEEECCCCccChHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999886
No 12
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=5.9e-56 Score=448.46 Aligned_cols=265 Identities=23% Similarity=0.344 Sum_probs=233.1
Q ss_pred cccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEecc
Q 020510 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFM 115 (325)
Q Consensus 36 ~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~ 115 (325)
.++++++|+++|.+++++|++||++++|+.. ++ + ...|+++| |+||||+||+||+|+++|+|||++|+|||+++|
T Consensus 356 ~~sy~~af~~aL~e~a~~D~~Iv~l~adm~g--gt-~-~~~f~~~f-PdR~fdvGIAEq~~Vg~AaGLA~~G~rPvv~~f 430 (641)
T PLN02234 356 TQSYTSCFVEALIAEAEADKDIVAIHAAMGG--GT-M-LNLFESRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCTIY 430 (641)
T ss_pred CCCHHHHHHHHHHHHHHHCcCEEEEECCCCC--Cc-c-hHHHHHHc-cccccCCCcCHHHHHHHHHHHHHCCCeEEEEeh
Confidence 3689999999999999999999999999853 33 2 37899999 999999999999999999999999999999996
Q ss_pred cccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC-CCCCCCCCCcchHH-HHHHhcCCCcEEEeeCCHHHHHHHHHH
Q 020510 116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAGVGAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKA 193 (325)
Q Consensus 116 ~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~~g~G~tHs~~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~ 193 (325)
+.|++||||||++++|+ +++||+++... |..+++|+||++.. .+++|++|||+|++|+|+.|++.++++
T Consensus 431 -s~Fl~RA~DQI~~dva~--------~~lpV~~v~~~aG~~g~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~ 501 (641)
T PLN02234 431 -SSFMQRAYDQVVHDVDL--------QKLPVRFAIDRAGLMGADGPTHCGAFDVTFMACLPNMIVMAPSDEAELFNMVAT 501 (641)
T ss_pred -HHHHHHHHHHHHHHHhh--------cCCCEEEEEeCCccCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence 77889999999999996 68999888743 65566999997754 499999999999999999999999999
Q ss_pred hHhC-CCcEEEEeCccccCcccCccccccC--CCccccCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEE
Q 020510 194 AIRD-PDPVVFLENELLYGESFPVSAEVLD--SSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVI 270 (325)
Q Consensus 194 a~~~-~~Pv~ir~~~~l~~~~~p~~~~~~~--~~~~~~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi 270 (325)
++.. ++|+|+|++|..+... .++. ..+.+++|+++++++|+|++||++|+++++|++|++.|+++||+++||
T Consensus 502 a~~~~~~Pv~ir~~R~~~~~~-----~~~~~~~~~~~~iGk~~vlreG~dvtIva~G~~v~~Al~AA~~L~~~GI~v~VI 576 (641)
T PLN02234 502 AAAIDDRPSCFRYHRGNGIGV-----SLPPGNKGVPLQIGRGRILRDGERVALLGYGSAVQRCLEAASMLSERGLKITVA 576 (641)
T ss_pred HHhCCCCCEEEEeeccccccc-----ccCCCCccccccCceEEEEEeCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEE
Confidence 8865 5899999988743210 1111 134578999999999999999999999999999999999999999999
Q ss_pred EeeeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcCCCccc
Q 020510 271 NLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFPPAWLI 320 (325)
Q Consensus 271 ~~~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~~~~~~ 320 (325)
|+++++|||++.+.+++++++.|||+|||.. ||||++|++.|++++++-
T Consensus 577 d~rsikPlD~~~i~sl~k~~~~vVt~Ee~~~-GG~Gs~Va~~l~e~~~~~ 625 (641)
T PLN02234 577 DARFCKPLDVALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLD 625 (641)
T ss_pred ecCCcCCCCHHHHHHHHHhCCEEEEECCCCC-CcHHHHHHHHHHHcCCCC
Confidence 9999999999999888878888999999987 999999999999998653
No 13
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=6.8e-55 Score=444.05 Aligned_cols=263 Identities=23% Similarity=0.351 Sum_probs=232.2
Q ss_pred cccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEecc
Q 020510 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFM 115 (325)
Q Consensus 36 ~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~ 115 (325)
..++.++|+++|.+++++|++||++++|.+ +.+++ .+|+++| |+||||+||+||+|+++|+|||+.|++||+++|
T Consensus 355 ~~~~s~a~~~aL~~~a~~d~~vv~ita~m~---g~~gl-~~f~~~f-P~R~fdvGIAEq~~vg~AaGLA~~G~kPvv~~f 429 (677)
T PLN02582 355 TQSYTTYFAEALIAEAEVDKDVVAIHAAMG---GGTGL-NLFARRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIY 429 (677)
T ss_pred CcCHHHHHHHHHHHHHccCCCEEEEeCCCC---Cccch-HHHHHHc-CccccccCcCHHHHHHHHHHHHHCCCeEEEEec
Confidence 357999999999999999999999999875 33455 6899999 999999999999999999999999999999996
Q ss_pred cccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC-CCCCCCCCCcchHH-HHHHhcCCCcEEEeeCCHHHHHHHHHH
Q 020510 116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAGVGAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKA 193 (325)
Q Consensus 116 ~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~~g~G~tHs~~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~ 193 (325)
+.|++||||||++++|+ +++||+++..+ |..+++|+||++.+ .++||++|||+|++|+|++|++.++++
T Consensus 430 -s~Fl~RA~DQI~~dval--------~~lpVv~v~~~aG~vg~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~ 500 (677)
T PLN02582 430 -SSFLQRGYDQVVHDVDL--------QKLPVRFAMDRAGLVGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELFHMVAT 500 (677)
T ss_pred -HHHHHHHHHHHHHHHHh--------cCCCEEEEEECCCcccCCCCcccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence 77889999999999997 68999999874 66667999996644 589999999999999999999999999
Q ss_pred hHhC-CCcEEEEeCccccCcccCccccccC--CCccccCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEE
Q 020510 194 AIRD-PDPVVFLENELLYGESFPVSAEVLD--SSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVI 270 (325)
Q Consensus 194 a~~~-~~Pv~ir~~~~l~~~~~p~~~~~~~--~~~~~~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi 270 (325)
+++. ++|+|||.+|... +. ..+++ .++.+++|+++++++|+|++||++|++++.|++|++.|+++||+++||
T Consensus 501 al~~~~gPv~IR~pr~~~----~~-~~~~~~~~~~~~~iGk~~vlr~G~dvtIva~G~~v~~Al~Aa~~L~~~GI~~~VI 575 (677)
T PLN02582 501 AAAIDDRPSCFRYPRGNG----IG-VQLPPNNKGIPIEVGKGRILLEGERVALLGYGTAVQSCLAAASLLERHGLSATVA 575 (677)
T ss_pred HHhCCCCCEEEEEecCCC----CC-cccCCcccccccccCceEEEEeCCCEEEEeecHHHHHHHHHHHHHHhcCCCEEEE
Confidence 9975 5999999887621 00 01111 134578999999999999999999999999999999999999999999
Q ss_pred EeeeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcCCCc
Q 020510 271 NLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFPPAW 318 (325)
Q Consensus 271 ~~~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~~~~ 318 (325)
|++|+||||++.|.+++++++.|||+|||.. ||+|+.|++++.+++.
T Consensus 576 d~~~lkPlD~~~i~~~~k~~~~vVtvEe~~~-GG~Gs~va~~l~~~~~ 622 (677)
T PLN02582 576 DARFCKPLDRALIRSLAKSHEVLITVEEGSI-GGFGSHVAQFMALDGL 622 (677)
T ss_pred EcCcCCCCCHHHHHHHhhhCCEEEEECCCCC-CcHHHHHHHHHHhcCC
Confidence 9999999999999888878888999999998 9999999999998764
No 14
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=2.4e-54 Score=437.77 Aligned_cols=261 Identities=22% Similarity=0.270 Sum_probs=229.6
Q ss_pred cccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEecc
Q 020510 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFM 115 (325)
Q Consensus 36 ~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~ 115 (325)
+.+++++|+++|.+++++|++++++++|+.. .+++ .+|+++| |+||||+||+||+|+++|+|||+.|++||+.+|
T Consensus 277 ~~~~~~~~~~~l~~~~~~d~~i~~i~~~~~~---~~~~-~~f~~~f-P~R~id~GIaEq~~v~~AaGlA~~G~~Pvv~~f 351 (581)
T PRK12315 277 GESYSSVTLDYLLKKIKEGKPVVAINAAIPG---VFGL-KEFRKKY-PDQYVDVGIAEQESVAFASGIAANGARPVIFVN 351 (581)
T ss_pred CcCHHHHHHHHHHHHhccCCCEEEEeCcccc---ccCc-HHHHHhc-cccccCCCchHHHHHHHHHHHHHCcCeEEEEee
Confidence 4589999999999999999999999999753 3455 8899999 999999999999999999999999999999776
Q ss_pred cccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCCcch-HHHHHHhcCCCcEEEeeCCHHHHHHHHHHh
Q 020510 116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSH-CYAAWYASVPGLKVLSPYSSEDARGLLKAA 194 (325)
Q Consensus 116 ~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tHs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a 194 (325)
+.|++||||||++++|+ +++||+++++++...++|+||++ .++++||++|||+|++|+|+.|++.+++++
T Consensus 352 -s~Fl~ra~dQi~~d~a~--------~~lpv~~~~~~~g~~~dG~TH~~~~Dia~lr~iPnl~V~~P~d~~e~~~~l~~a 422 (581)
T PRK12315 352 -STFLQRAYDQLSHDLAI--------NNNPAVMIVFGGSISGNDVTHLGIFDIPMISNIPNLVYLAPTTKEELIAMLEWA 422 (581)
T ss_pred -HHHHHHHHHHHHHHHHh--------cCCCEEEEEECCcccCCCccccccHHHHHHhcCCCCEEEecCCHHHHHHHHHHH
Confidence 77889999999999997 58999999875333349999965 445999999999999999999999999999
Q ss_pred HhC-CCcEEEEeCccccCcccCccccccCCCccccCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhc-CCcEEEEEe
Q 020510 195 IRD-PDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE-GISAEVINL 272 (325)
Q Consensus 195 ~~~-~~Pv~ir~~~~l~~~~~p~~~~~~~~~~~~~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~-Gi~~~Vi~~ 272 (325)
++. ++|+|||++|..+.. .+..+..+..++++++++|+|++||++|++++.|++|++.|+++ ||+++|||+
T Consensus 423 ~~~~~gP~~ir~~r~~~~~-------~~~~~~~~~~~k~~v~~~g~dvtiia~G~~v~~Al~Aa~~L~~~~gi~~~Vid~ 495 (581)
T PRK12315 423 LTQHEHPVAIRVPEHGVES-------GPTVDTDYSTLKYEVTKAGEKVAILALGDFYELGEKVAKKLKEELGIDATLINP 495 (581)
T ss_pred HhCCCCcEEEEEcCCccCC-------CCCCccCcccceEEEEecCCCEEEEEEchHHHHHHHHHHHHhhhcCCCEEEEec
Confidence 986 699999998764321 11111234456899999999999999999999999999999999 999999999
Q ss_pred eeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcCCC
Q 020510 273 RSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFPPA 317 (325)
Q Consensus 273 ~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~~~ 317 (325)
+|+||||++.+.+++++++.|||+|||+..||+|++|++++.+++
T Consensus 496 ~~ikPlD~~~i~~~~~~~~~vvtvEe~~~~GG~gs~v~~~l~~~~ 540 (581)
T PRK12315 496 KFITGLDEELLEKLKEDHELVVTLEDGILDGGFGEKIARYYGNSD 540 (581)
T ss_pred CcCCCCCHHHHHHHHhhCCEEEEEcCCCcCCCHHHHHHHHHHcCC
Confidence 999999999998888778889999999999999999999998875
No 15
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=1.4e-53 Score=435.96 Aligned_cols=263 Identities=25% Similarity=0.372 Sum_probs=232.1
Q ss_pred cccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEecc
Q 020510 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFM 115 (325)
Q Consensus 36 ~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~ 115 (325)
..+++++|+++|.+++++|++|+++++|+..++ ++ .+|+++| |+||||+||+||+|+++|+|||+.|++||+++|
T Consensus 318 ~~~~~~~f~~~L~~la~~d~~iv~isadl~~~~---~~-~~f~~~~-p~R~id~GIaE~~mvg~AaGlA~~G~~P~v~~f 392 (641)
T PRK12571 318 APSYTSVFGEELTKEAAEDSDIVAITAAMPLGT---GL-DKLQKRF-PNRVFDVGIAEQHAVTFAAGLAAAGLKPFCAVY 392 (641)
T ss_pred chhHHHHHHHHHHHHHhhCCCEEEEeCCccCCC---Ch-HHHHHhC-CCcccccCccHHHHHHHHHHHHHCCCEEEEEeh
Confidence 357999999999999999999999999986433 33 7899999 999999999999999999999999999999996
Q ss_pred cccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeC-CCCCCCCCCCcchHH-HHHHhcCCCcEEEeeCCHHHHHHHHHH
Q 020510 116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAGVGAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKA 193 (325)
Q Consensus 116 ~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G~~~g~G~tHs~~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~ 193 (325)
+.|++||+|||++++|+ +++||+++.. .|..+++|+||++.. .++||+||||+|++|+|+.|++.++++
T Consensus 393 -~~Fl~ra~dQI~~~~a~--------~~lpv~~v~~~~G~~g~dG~THq~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~ 463 (641)
T PRK12571 393 -STFLQRGYDQLLHDVAL--------QNLPVRFVLDRAGLVGADGATHAGAFDLAFLTNLPNMTVMAPRDEAELRHMLRT 463 (641)
T ss_pred -HHHHHHHHHHHHHHHhh--------cCCCeEEEEECCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence 67889999999999997 5899999874 466667999996644 599999999999999999999999999
Q ss_pred hHhC-CCcEEEEeCccccCcccCccccccCCCccccCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEe
Q 020510 194 AIRD-PDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINL 272 (325)
Q Consensus 194 a~~~-~~Pv~ir~~~~l~~~~~p~~~~~~~~~~~~~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~ 272 (325)
+++. ++|+|||++|..+.. ..++++++.+++||+.++++|+|++||++|++++.|++|++.|+++||+++|||+
T Consensus 464 a~~~~~~P~~ir~~r~~~~~-----~~~~~~~~~~~~gk~~vlr~G~ditIva~G~~v~~aleAa~~L~~~Gi~v~VId~ 538 (641)
T PRK12571 464 AAAHDDGPIAVRFPRGEGVG-----VEIPAEGTILGIGKGRVPREGPDVAILSVGAHLHECLDAADLLEAEGISVTVADP 538 (641)
T ss_pred HHhCCCCcEEEEEecCcCCc-----cccCCCCccccCceeEEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEc
Confidence 9995 799999988763211 1222334567899999999999999999999999999999999999999999999
Q ss_pred eeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcCCCc
Q 020510 273 RSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFPPAW 318 (325)
Q Consensus 273 ~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~~~~ 318 (325)
++|+|||++.|.+++ ++++++|+|||...||+|++|++++.+++|
T Consensus 539 ~~lkPlD~~~i~sv~-k~~~vvvveE~~~~gG~g~~v~~~l~~~~~ 583 (641)
T PRK12571 539 RFVKPLDEALTDLLV-RHHIVVIVEEQGAMGGFGAHVLHHLADTGL 583 (641)
T ss_pred CcCCCcCHHHHHHHh-hhCCEEEEECCCCCCCHHHHHHHHHHhcCc
Confidence 999999999986655 555899999999999999999999998875
No 16
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=9.8e-53 Score=427.07 Aligned_cols=258 Identities=28% Similarity=0.409 Sum_probs=230.5
Q ss_pred ccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEeccc
Q 020510 37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMT 116 (325)
Q Consensus 37 ~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~~ 116 (325)
.++|++|+++|.+++++|++++++++|+..++ ++ ..|+++| |+||||+||+||+|+++|+|||+.|++||+++|
T Consensus 279 ~~~~~~~~~~L~~~~~~~~~vv~~~adl~~~~---~~-~~f~~~~-p~R~i~~GIaE~~mvg~A~GlA~~G~~p~~~~f- 352 (580)
T PRK05444 279 PSYTKVFGETLCELAEKDPKIVAITAAMPEGT---GL-VKFSKRF-PDRYFDVGIAEQHAVTFAAGLATEGLKPVVAIY- 352 (580)
T ss_pred ccHHHHHHHHHHHHHhhCCCEEEEECCcCCCC---CH-HHHHHHh-hhhccCCChHHHHHHHHHHHHHHCCCeeEEEee-
Confidence 67999999999999999999999999985332 33 5699999 999999999999999999999999999999996
Q ss_pred ccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeC-CCCCCCCCCCcchHH-HHHHhcCCCcEEEeeCCHHHHHHHHHHh
Q 020510 117 FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAGVGAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAA 194 (325)
Q Consensus 117 ~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G~~~g~G~tHs~~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a 194 (325)
+.|+.|++|||++++|+ +++||+++++ +|..+++|+||++.. .++||+|||++|++|+|+.|++.+++++
T Consensus 353 ~~F~~ra~dQi~~~~a~--------~~~pv~~v~~~~G~~g~dG~tH~~~edia~lr~iP~l~V~~Psd~~e~~~~l~~a 424 (580)
T PRK05444 353 STFLQRAYDQVIHDVAL--------QNLPVTFAIDRAGLVGADGPTHQGAFDLSYLRCIPNMVIMAPSDENELRQMLYTA 424 (580)
T ss_pred HHHHHHHHHHHHHHhhh--------cCCCEEEEEeCCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHH
Confidence 66778999999999997 5899999986 466566899996644 5999999999999999999999999999
Q ss_pred HhC-CCcEEEEeCccccCcccCccccccCCCccccCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEee
Q 020510 195 IRD-PDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLR 273 (325)
Q Consensus 195 ~~~-~~Pv~ir~~~~l~~~~~p~~~~~~~~~~~~~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~ 273 (325)
++. ++|+|||++|..+.. .. .++.+.+++|+++++++|+|++||++|++++.|++|++.|+ +++|||++
T Consensus 425 ~~~~~~P~~ir~~r~~~~~-----~~-~~~~~~~~~Gk~~vl~~G~dvtIia~G~~v~~al~Aa~~L~----~~~VId~~ 494 (580)
T PRK05444 425 LAYDDGPIAIRYPRGNGVG-----VE-LPELEPLPIGKGEVLREGEDVAILAFGTMLAEALKAAERLA----SATVVDAR 494 (580)
T ss_pred HhCCCCcEEEEecCCCCCC-----CC-CCCcccccCCceEEEEcCCCEEEEEccHHHHHHHHHHHHhC----CCEEEEeC
Confidence 976 799999998864321 01 12246688999999999999999999999999999999996 89999999
Q ss_pred eccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcCCCc
Q 020510 274 SIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFPPAW 318 (325)
Q Consensus 274 ~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~~~~ 318 (325)
|++|||++.|.+++++++++||+|||+..||+|++|++++.++++
T Consensus 495 ~i~p~D~~~i~~~~~~~~~vv~vEe~~~~gG~g~~va~~l~~~~~ 539 (580)
T PRK05444 495 FVKPLDEELLLELAAKHDLVVTVEEGAIMGGFGSAVLEFLADHGL 539 (580)
T ss_pred cCCccCHHHHHHHHhcCCeEEEEECCCCCCCHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999998875
No 17
>KOG0525 consensus Branched chain alpha-keto acid dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=100.00 E-value=7.4e-53 Score=370.33 Aligned_cols=282 Identities=35% Similarity=0.642 Sum_probs=268.6
Q ss_pred ccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEec
Q 020510 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEF 114 (325)
Q Consensus 35 ~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~ 114 (325)
++|..-.++..+|.-.+++||+-++.++|++ .+|+|.++.+|+++||.+|+||++.+||+++|+.+|+|..|.+.+.++
T Consensus 39 ~~mnl~qsvn~al~ial~tdp~a~vfgedv~-fggvfrct~gl~~kfgk~rvfntplceqgivgfgig~aa~g~~aiaei 117 (362)
T KOG0525|consen 39 KKMNLYQSVNQALHIALETDPRAVVFGEDVA-FGGVFRCTTGLAEKFGKDRVFNTPLCEQGIVGFGIGLAAMGATAIAEI 117 (362)
T ss_pred ccchHHHHHHHHHHHHhhcCCceEEeccccc-cceEEEeecchHHHhCccccccCchhhcccceechhhhhcccceEEEE
Confidence 7888999999999999999999999999997 899999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHhhccccCCCCccC-CEEEEeCCCCCCCCCCCcchHHHHHHhcCCCcEEEeeCCHHHHHHHHHH
Q 020510 115 MTFNFSMQAIDHIINSAAKSNYMSSGQISV-PIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKA 193 (325)
Q Consensus 115 ~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~-pvv~~~~~G~~~g~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~ 193 (325)
++++++..|||||.|.+++.+|++|.+.|+ .++++.++|..+..+..|||+.|++|.+.||++|+.|..|.|++.+|..
T Consensus 118 qfadyifpafdqivneaakfryrsgnqfncg~ltir~p~gavghg~~yhsqspeaff~h~pgikvviprsp~qakgllls 197 (362)
T KOG0525|consen 118 QFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIRAPWGAVGHGALYHSQSPEAFFCHVPGIKVVIPRSPRQAKGLLLS 197 (362)
T ss_pred eeccccchhHHHHHHHHHhheeccCCccccCceEEeccccccccccccccCCchhheecCCCceEEecCCcchhhceeee
Confidence 999999999999999999999999999999 5999999888777788999999999999999999999999999999999
Q ss_pred hHhCCCcEEEEeCccccCcccCccccccCCCccccCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhc-CCcEEEEEe
Q 020510 194 AIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE-GISAEVINL 272 (325)
Q Consensus 194 a~~~~~Pv~ir~~~~l~~~~~p~~~~~~~~~~~~~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~-Gi~~~Vi~~ 272 (325)
++++++|+++.+++.+|+... .++|.++|.++++.++++|+|+|+++++||..++.++|++-.-+|+ |++++|||+
T Consensus 198 cirdpnp~iffepk~lyr~a~---edvp~~dy~iplsqaevireg~ditlv~wgtqvh~i~e~a~l~~ek~giscevidl 274 (362)
T KOG0525|consen 198 CIRDPNPCIFFEPKILYRQAV---EDVPEGDYMIPLSQAEVIREGSDITLVAWGTQVHVIMEQACLAKEKLGISCEVIDL 274 (362)
T ss_pred eccCCCceEEechHHHHHHhh---hhCCCCCccccccHHHHhhcCCceEEEEcchhhHHHHHHHHhhHHhcCCceEEEee
Confidence 999999999999999997642 5678899999999999999999999999999999999998876655 999999999
Q ss_pred eeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcCCCccc
Q 020510 273 RSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFPPAWLI 320 (325)
Q Consensus 273 ~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~~~~~~ 320 (325)
.+|-|||.+.+.++++|++++++-.|..++||||++|++.++|++|+.
T Consensus 275 kti~pwd~d~v~~sv~ktgrllisheapvtggfgaeiastv~ercfl~ 322 (362)
T KOG0525|consen 275 KTIIPWDKDTVEESVQKTGRLLISHEAPVTGGFGAEIASTVQERCFLN 322 (362)
T ss_pred ecccCccHHHHHHHHHhhceEEEeccCCccCcchHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999874
No 18
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=100.00 E-value=3.2e-46 Score=382.72 Aligned_cols=256 Identities=19% Similarity=0.234 Sum_probs=212.8
Q ss_pred ccCcccccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCcccc-chhHHHHhCCCceeechhhHHHHHHHHHHHhc-c
Q 020510 29 NYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKI-SKGLLEKYGPERVLDTPITEAGFTGIGVGAAY-Y 106 (325)
Q Consensus 29 ~~~~~~~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~-~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~-~ 106 (325)
.|..+++++++|++|+++|.++++++++++++++|++.++.+... ...|+++| |+||||+||+||+|+++|+|||+ .
T Consensus 341 ~~~~~~~~~atR~~~g~~L~~la~~~p~iv~lsaDl~~s~~~~~~~~~~f~~~~-p~rfi~~GIaEq~mv~~AaGlA~~g 419 (653)
T TIGR00232 341 EFKAKLQALATRKYSQNVLNAIANVLPELLGGSADLAPSNLTKWKGSGDLHENP-LGNYIHYGVREFAMGAIMNGIALHG 419 (653)
T ss_pred hhhccCcchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCcccccccchhhcC-CCCeEeecccHHHHHHHHHHHHHcC
Confidence 343344788999999999999999999999999999765543100 01278899 99999999999999999999999 6
Q ss_pred CCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeC-CCCC-CCCCCCcchHH--HHHHhcCCCcEEEeeC
Q 020510 107 GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAA-AGVGAQHSHCY--AAWYASVPGLKVLSPY 182 (325)
Q Consensus 107 G~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G~~-~g~G~tHs~~~--~a~~~~iP~~~V~~P~ 182 (325)
|++||++||+ .|++|+++|||+. |+ +++||++++. +|.+ +.+|+|| |.+ .++||++|||+|+.|+
T Consensus 420 G~~p~~~tf~-~F~~r~~~~ir~~-a~--------~~lpV~~v~th~g~~~G~dG~TH-q~iedia~lr~iPn~~v~~Pa 488 (653)
T TIGR00232 420 GFKPYGGTFL-MFVDYARPAIRLA-AL--------MKLPVIYVYTHDSIGVGEDGPTH-QPIEQLASLRAIPNLSVWRPC 488 (653)
T ss_pred CCeEEEEEhH-HHHHHHHHHHHHH-Hh--------cCCCEEEEEeCCccCCCCCCccc-CCHHHHHHHhcCCCCEEEeeC
Confidence 8999999984 5678999999987 86 5789999885 3655 4589999 655 4899999999999999
Q ss_pred CHHHHHHHHHHhH-hCCCcEEEEeCccccCcccCccccccCCC-ccccCCceEEe--eeCCcEEEEEechhHHHHHHHHH
Q 020510 183 SSEDARGLLKAAI-RDPDPVVFLENELLYGESFPVSAEVLDSS-FCLPIGKAKIE--REGKDVTITAFSKIVGLSLKAAE 258 (325)
Q Consensus 183 d~~e~~~~l~~a~-~~~~Pv~ir~~~~l~~~~~p~~~~~~~~~-~~~~~gk~~vl--~~G~dv~Iia~G~~~~~a~~Aa~ 258 (325)
|+.|++.++++++ +.++|+|||.+|.. .| .+++.+ ..+..|+ +++ ++|.|++||++|+++++|++|++
T Consensus 489 D~~E~~~~~~~a~~~~~gP~~irl~r~~----~~---~~~~~~~~~~~~G~-~vl~~~~g~dv~iia~G~~v~~al~Aa~ 560 (653)
T TIGR00232 489 DGNETAAAWKYALESQDGPTALILSRQN----LP---QLEESSLEKVLKGG-YVLKDSKGPDIILIATGSEVSLAVEAAK 560 (653)
T ss_pred CHHHHHHHHHHHHhcCCCcEEEEEcCCc----cC---CCCcccccccCCCc-EEEEecCCCCEEEEEeChHHHHHHHHHH
Confidence 9999999999999 56799999988762 22 122222 3456675 666 67899999999999999999999
Q ss_pred HHHhcCCcEEEEEeeeccCCCHHH---HHHHHhCCCeEEEEecCCCCCCH
Q 020510 259 ILAKEGISAEVINLRSIRPLDRST---INASVRKTNRLVTVEEGFPQHGV 305 (325)
Q Consensus 259 ~L~~~Gi~~~Vi~~~~l~P~d~~~---l~~~~~~~~~vvvvEe~~~~GGl 305 (325)
.|+++||+++|||++|++|||.+. +.++++++..+||+|||+. +|+
T Consensus 561 ~L~~~Gi~~~VI~~~~ikpld~~~~~~~~~~~~~~~~vvtvEe~~~-~g~ 609 (653)
T TIGR00232 561 KLAAENIKVRVVSMPSFDLFDKQDEEYRESVLPANVTRLAVEAGAA-DEW 609 (653)
T ss_pred HHHhcCCcEEEEecccCcccccCCHHHHHHHhcccCceEEEecccH-hHH
Confidence 999999999999999999997755 8877877888999999987 444
No 19
>PRK05899 transketolase; Reviewed
Probab=100.00 E-value=1.1e-45 Score=378.57 Aligned_cols=246 Identities=22% Similarity=0.294 Sum_probs=204.3
Q ss_pred ccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHH------HHhCCCceeechhhHHHHHHHHHHHhccC-
Q 020510 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLL------EKYGPERVLDTPITEAGFTGIGVGAAYYG- 107 (325)
Q Consensus 35 ~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~------~~~gp~R~i~~GIaE~~~vg~A~GlA~~G- 107 (325)
+++++|++|+++|.+++++|++++++++|++.+++. ..+. ++| |+||||+||+||+|+++|+|||+.|
T Consensus 317 ~~~~~~~a~~~~l~~l~~~~~~v~vl~~D~~~~~~~----~~~~~~~f~~~~~-p~R~~d~GIaE~~~vg~A~GlA~~G~ 391 (624)
T PRK05899 317 EKVATRKASGKALNALAKALPELVGGSADLAGSNNT----KIKGSKDFAPEDY-SGRYIHYGVREFAMAAIANGLALHGG 391 (624)
T ss_pred cchHHHHHHHHHHHHHHhhCCCEEEEeCCCccccCc----ccccccccCccCC-CCCeeeeChhHHHHHHHHHHHHHcCC
Confidence 566789999999999999999999999999754332 2233 467 8999999999999999999999999
Q ss_pred CeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC-CCC-CCCCCCcchHHH--HHHhcCCCcEEEeeCC
Q 020510 108 LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAA-AGVGAQHSHCYA--AWYASVPGLKVLSPYS 183 (325)
Q Consensus 108 ~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~-~g~G~tHs~~~~--a~~~~iP~~~V~~P~d 183 (325)
++||+++|.+ |+.|++||||+. ++ +++|+++++.. |.. +++|+|| |+++ ++||++|||+|++|+|
T Consensus 392 ~~pv~~t~~~-F~~r~~~qir~~-~~--------~~~pv~~v~~~~G~~~g~~G~tH-q~~edia~~r~iP~~~V~~P~d 460 (624)
T PRK05899 392 FIPFGGTFLV-FSDYARNAIRLA-AL--------MKLPVIYVFTHDSIGVGEDGPTH-QPVEQLASLRAIPNLTVIRPAD 460 (624)
T ss_pred CeEEEEEcHH-HHHHHHHHHHHH-Hh--------cCCCEEEEEECCCcCcCCCCCCc-ccHHHHHHHHhCCCcEEEeCCC
Confidence 9999999855 579999999985 75 57899998654 664 4599999 7664 8999999999999999
Q ss_pred HHHHHHHHHHhHhC-CCcEEEEeCccccCcccCccccccC--CCccccCCceEEeeeCCcEEEEEechhHHHHHHHHHHH
Q 020510 184 SEDARGLLKAAIRD-PDPVVFLENELLYGESFPVSAEVLD--SSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEIL 260 (325)
Q Consensus 184 ~~e~~~~l~~a~~~-~~Pv~ir~~~~l~~~~~p~~~~~~~--~~~~~~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L 260 (325)
++|++.+++++++. ++|+|||++|. ..| .+++ ..+.++.|+ +++++|.|++||++|+++++|++|++.|
T Consensus 461 ~~e~~~~l~~a~~~~~~P~~ir~~r~----~~~---~~~~~~~~~~~~~G~-~~l~~G~dvtiia~G~~v~~al~Aa~~L 532 (624)
T PRK05899 461 ANETAAAWKYALERKDGPSALVLTRQ----NLP---VLERTAQEEGVAKGG-YVLRDDPDVILIATGSEVHLALEAADEL 532 (624)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEeCC----CCC---CcCCccccccccCCc-EEEecCCCEEEEEeCHHHHHHHHHHHHH
Confidence 99999999999998 89999998764 222 1222 224577786 8889999999999999999999999999
Q ss_pred HhcCCcEEEEEeeeccCCCHHH---HHHHH-hCCCeEEEEecCCCCCCH
Q 020510 261 AKEGISAEVINLRSIRPLDRST---INASV-RKTNRLVTVEEGFPQHGV 305 (325)
Q Consensus 261 ~~~Gi~~~Vi~~~~l~P~d~~~---l~~~~-~~~~~vvvvEe~~~~GGl 305 (325)
+++||+++|||++||+|||++. +...+ .....++++|++.. +|+
T Consensus 533 ~~~gi~~~VId~~sikPlD~~e~h~~~~~lg~~~~~~v~~e~~~~-~g~ 580 (624)
T PRK05899 533 EAEGIKVRVVSMPSTELFDEQDAAYKESVLPAAVTARVAVEAGVA-DGW 580 (624)
T ss_pred HhcCCcEEEEECCCcchhccCcHHHHhccccccccceEEEccCCc-cch
Confidence 9999999999999999999983 44444 33446788887765 555
No 20
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-45 Score=358.57 Aligned_cols=265 Identities=23% Similarity=0.352 Sum_probs=223.6
Q ss_pred cccccCcccccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhc
Q 020510 26 NLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAY 105 (325)
Q Consensus 26 ~~~~~~~~~~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~ 105 (325)
-+++|..+++.+++|++|.++|..+.+.+|++|.+.+|+..++.+ +-|.++| |+|||++||+||||+++|.|+|.
T Consensus 309 ~~p~yk~~Dk~~Atrk~~~~aL~~l~~~~~~vI~~~ad~~~st~t----d~~~~~~-p~R~i~~giaEq~mv~ia~G~a~ 383 (632)
T KOG0523|consen 309 SLPTYKVGDKAVATRKAFGEALAALAEADPRVIGGSADLKNSTLT----DFFPKRF-PERFIECGIAEQNMVGIANGIAC 383 (632)
T ss_pred cCCccccCChhhhHHHHHHHHHHHHhhcCcCeEEEecccCCCchh----hhccccC-ccceEEEeeehhhhHHhhhchhc
Confidence 355899887779999999999999999999999999999876533 6677889 99999999999999999999999
Q ss_pred cCC-eeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeC-CCCC-CCCCCCcchHH--HHHHhcCCCcEEEe
Q 020510 106 YGL-KPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAA-AGVGAQHSHCY--AAWYASVPGLKVLS 180 (325)
Q Consensus 106 ~G~-~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G~~-~g~G~tHs~~~--~a~~~~iP~~~V~~ 180 (325)
.|. +||+.|| +.|++||+||+|+++- .+.++++++. ++.+ +.+|+|| |.. .++||++|||.|+.
T Consensus 384 ~g~~~Pf~~tf-~~F~trA~dqvr~~a~---------s~~~v~~v~th~~i~~GeDGPth-~~iedlA~frsiPn~~v~~ 452 (632)
T KOG0523|consen 384 RGRTIPFCGTF-AAFFTRAFDQVRMGAL---------SQANVIYVATHDSIGLGEDGPTH-QPIEDLAMFRSIPNMIVFR 452 (632)
T ss_pred CCCccchhHHH-HHHHHHhhhheeehhh---------ccCCcEEEEEeccccccCCCccc-ccHHHHHHHHhCCCceEEe
Confidence 998 9999998 5689999999999753 3445555543 4555 5599999 644 49999999999999
Q ss_pred eCCHHHHHHHHHHhHhCCC-cEEEEeCccccCcccCccccccCCCccccCCceE-EeeeCC-cEEEEEechhHHHHHHHH
Q 020510 181 PYSSEDARGLLKAAIRDPD-PVVFLENELLYGESFPVSAEVLDSSFCLPIGKAK-IEREGK-DVTITAFSKIVGLSLKAA 257 (325)
Q Consensus 181 P~d~~e~~~~l~~a~~~~~-Pv~ir~~~~l~~~~~p~~~~~~~~~~~~~~gk~~-vl~~G~-dv~Iia~G~~~~~a~~Aa 257 (325)
|+|..|+..+++.|++.++ |++++.+|. +.| .+ +....++.|+++ +++++. ||+||++|++++++++||
T Consensus 453 PaD~~et~~av~~Aa~~~~~p~i~~~~r~----~~~---~~-~~~~~~~igkg~~vl~~~~~dV~LiG~Gs~v~~cl~AA 524 (632)
T KOG0523|consen 453 PADGNETENAVATAANTKGTPSIRTLSRQ----NLP---IY-NNTEIEEIGKGKYVLQEVEPDVILIGTGSEVQECLEAA 524 (632)
T ss_pred cCchHHHHHHHHHHHhcCCCeeEEEecCc----ccc---cc-CCCchhhhccccEEEecCCCCEEEEeccHHHHHHHHHH
Confidence 9999999999999999766 888876543 222 22 233346788877 777876 999999999999999999
Q ss_pred HHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCC-eEEEEecCCCCCCHHHHHHHHHc
Q 020510 258 EILAKEGISAEVINLRSIRPLDRSTINASVRKTN-RLVTVEEGFPQHGVGAEIWCAFF 314 (325)
Q Consensus 258 ~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~-~vvvvEe~~~~GGlg~~v~~~l~ 314 (325)
+.|+++||+++|+|++++||||..+|+++.+.++ ++.|+|||+..||++.++.....
T Consensus 525 ~~L~~~gi~vrVvd~~~~kplD~~li~~~~q~~e~ri~v~ed~~~~gsi~~~~~a~~g 582 (632)
T KOG0523|consen 525 ELLSEDGIKVRVVDPFTWKPLDVALIRSLAQSHEYRISVLEDHVPAGSIEVAVTAAWG 582 (632)
T ss_pred HHHHhcCceEEEecccceeecchHHhhhhhcccceeEEEccCCCCCcchhheeeehhc
Confidence 9999999999999999999999999998887764 79999999988888887765543
No 21
>PTZ00089 transketolase; Provisional
Probab=100.00 E-value=4e-45 Score=375.11 Aligned_cols=256 Identities=18% Similarity=0.217 Sum_probs=209.9
Q ss_pred cccCcccccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCcc-ccchhHHHHhCC-CceeechhhHHHHHHHHHHHhc
Q 020510 28 RNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY-KISKGLLEKYGP-ERVLDTPITEAGFTGIGVGAAY 105 (325)
Q Consensus 28 ~~~~~~~~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~-~~~~~~~~~~gp-~R~i~~GIaE~~~vg~A~GlA~ 105 (325)
..|..+++++++|++|+++|.++.+.+++++.+++|+..++.+. .-...|+++| | +||||+||+||+|+++|+|||+
T Consensus 346 ~~~~~~~~~~a~R~~~g~~L~~la~~~~~~~~~saDl~~s~~~~~~~~~~f~~~~-P~~rfi~~GIaEq~mv~~AaGlA~ 424 (661)
T PTZ00089 346 PKYTTNDKAIATRKASENVLNPLFQILPELIGGSADLTPSNLTRPKEANDFTKAS-PEGRYIRFGVREHAMCAIMNGIAA 424 (661)
T ss_pred hhhcccCcchHHHHHHHHHHHHHHhhCCCeEEEECCCCcccCcCCcccccccccC-CCCCeeeeeecHHHHHHHHHHHHH
Confidence 33444456789999999999999999999999999997654320 0013688889 8 8999999999999999999999
Q ss_pred -cCCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeC-CCCC-CCCCCCcchHH--HHHHhcCCCcEEEe
Q 020510 106 -YGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAA-AGVGAQHSHCY--AAWYASVPGLKVLS 180 (325)
Q Consensus 106 -~G~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G~~-~g~G~tHs~~~--~a~~~~iP~~~V~~ 180 (325)
.|++||+++| +.|++|++||||+. |+ +++||++++. +|.+ +.+|+|| |.+ .++||+||||+|+.
T Consensus 425 ~~G~~P~~~tf-~~Fl~Ra~dqir~~-al--------~~lpV~~v~thdg~~~g~DG~TH-q~iedia~lR~iPn~~V~~ 493 (661)
T PTZ00089 425 HGGFIPFGATF-LNFYGYALGAVRLA-AL--------SHHPVIYVATHDSIGLGEDGPTH-QPVETLALLRATPNLLVIR 493 (661)
T ss_pred cCCCeEEEEeh-HHHHHHHHHHHHHH-Hh--------cCCCeEEEEeCCceecCCCCCCc-ccHHHHHHHhcCCCcEEEe
Confidence 7999999998 56788999999876 87 5899999874 4554 4599999 644 49999999999999
Q ss_pred eCCHHHHHHHHHHhHh-CCCcEEEEeCccccCcccCccccccCCCccccCCceEEeeeC---CcEEEEEechhHHHHHHH
Q 020510 181 PYSSEDARGLLKAAIR-DPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREG---KDVTITAFSKIVGLSLKA 256 (325)
Q Consensus 181 P~d~~e~~~~l~~a~~-~~~Pv~ir~~~~l~~~~~p~~~~~~~~~~~~~~gk~~vl~~G---~dv~Iia~G~~~~~a~~A 256 (325)
|+|++|+..+++++++ .++|+|||.+|. ..| .++..+..+..+++++++++ .|++||++|+++.+|++|
T Consensus 494 PaD~~E~~~~l~~al~~~~gP~~irl~R~----~~~---~~~~~~~~~~~~g~~vl~~~~~~~dv~iia~G~~v~~Al~A 566 (661)
T PTZ00089 494 PADGTETSGAYALALANAKTPTILCLSRQ----NTP---PLPGSSIEGVLKGAYIVVDFTNSPQLILVASGSEVSLCVEA 566 (661)
T ss_pred cCCHHHHHHHHHHHHHcCCCCEEEEecCC----CCC---CcCCCccccccCceEEEeccCCCCCEEEEeeCHHHHHHHHH
Confidence 9999999999999995 579999998765 222 22223334445667888875 799999999999999999
Q ss_pred HHHHHhcCCcEEEEEeeeccCCCHHHHHHH---Hh-CCCeEEEEecCCCCC
Q 020510 257 AEILAKEGISAEVINLRSIRPLDRSTINAS---VR-KTNRLVTVEEGFPQH 303 (325)
Q Consensus 257 a~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~---~~-~~~~vvvvEe~~~~G 303 (325)
++.|++ ||+++|||++|++|||.+.+... +. +...++++|+|...|
T Consensus 567 a~~L~~-Gi~~~Vv~~~~ikp~d~~~~~~~~~v~~e~~~~~vtiE~~~~~g 616 (661)
T PTZ00089 567 AKALSK-ELNVRVVSMPCWELFDQQSEEYQQSVLPSGGVPVLSVEAYVSFG 616 (661)
T ss_pred HHHHhc-CCCeEEEeCCCccHHHHHHHHHHHHhcCCCCCceEeHHhhHHHH
Confidence 999999 99999999999999999976533 33 344689999998754
No 22
>PRK12753 transketolase; Reviewed
Probab=100.00 E-value=1.6e-44 Score=370.17 Aligned_cols=246 Identities=20% Similarity=0.212 Sum_probs=203.6
Q ss_pred ccccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCc-cccchhHHHHhCCCceeechhhHHHHHHHHHHHhc-cCCee
Q 020510 33 AVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGA-YKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAY-YGLKP 110 (325)
Q Consensus 33 ~~~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~-~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~-~G~~p 110 (325)
+++++++|++++++|.++++++|+++++++|++.++.+ +.-...|+++| |+||||+||+||+|+++|+|||+ .|++|
T Consensus 351 ~~~~~a~r~~~g~~L~~l~~~~p~lv~~sADl~~S~~~~~~~~~~f~~~~-p~r~i~~GIaEq~mv~~aaGlA~~~G~~P 429 (663)
T PRK12753 351 NPAKIATRKASQNTLEAYGPLLPELLGGSADLAPSNLTIWSGSKSLKEDP-AGNYIHYGVREFGMTAIANGIAHHGGFVP 429 (663)
T ss_pred cccccHHHHHHHHHHHHHHhhCCCeEEEccccccccCcccccccchhhcC-CCCEEEeeecHHHHHHHHHHHHHhCCCeE
Confidence 45688999999999999999999999999999866533 11125688899 99999999999999999999999 78999
Q ss_pred EEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeC-CCCC-CCCCCCcchHH--HHHHhcCCCcEEEeeCCHHH
Q 020510 111 VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAA-AGVGAQHSHCY--AAWYASVPGLKVLSPYSSED 186 (325)
Q Consensus 111 ~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G~~-~g~G~tHs~~~--~a~~~~iP~~~V~~P~d~~e 186 (325)
|++||+ .|++|++||||+. |+ +++||++++. +|.+ +.+|+|| |.+ .++||.||||+|+.|+|..|
T Consensus 430 ~~~tf~-~F~~r~~~qir~~-a~--------~~l~V~~v~thdg~~~G~DG~TH-q~iedla~lR~iPn~~v~~PaD~~E 498 (663)
T PRK12753 430 YTATFL-MFVEYARNAARMA-AL--------MKARQIMVYTHDSIGLGEDGPTH-QPVEQLASLRLTPNFSTWRPCDQVE 498 (663)
T ss_pred EEEehH-HHHHHHHHHHHHH-Hh--------cCCCeEEEEeCCCcccCCCCccc-ccHHHHHHHhcCCCCEEEccCCHHH
Confidence 999995 5678999999985 87 5799999865 4665 4599999 644 49999999999999999999
Q ss_pred HHHHHHHhHh-CCCcEEEEeCccccCcccCccccccCC---CccccCCceEEeeeCC---cEEEEEechhHHHHHHHHHH
Q 020510 187 ARGLLKAAIR-DPDPVVFLENELLYGESFPVSAEVLDS---SFCLPIGKAKIEREGK---DVTITAFSKIVGLSLKAAEI 259 (325)
Q Consensus 187 ~~~~l~~a~~-~~~Pv~ir~~~~l~~~~~p~~~~~~~~---~~~~~~gk~~vl~~G~---dv~Iia~G~~~~~a~~Aa~~ 259 (325)
+..+++++++ .++|+|||.+|. ..| .++.. ...+..|+ +++++|. |++||++|+++++|++|++.
T Consensus 499 ~~~~~~~al~~~~gP~~irl~R~----~~~---~~~~~~~~~~~~~~G~-~vl~~~~~~~dv~iia~Gs~v~~al~Aa~~ 570 (663)
T PRK12753 499 AAVAWKLAIERHNGPTALILSRQ----NLA---QQERTPEQVKNIARGG-YILKDSGGKPDLILIATGSEVEITLQAAEK 570 (663)
T ss_pred HHHHHHHHHhcCCCCEEEEecCC----CCC---CCCCcccchhhccCCc-EEEeccCCCCCEEEEEeCHHHHHHHHHHHH
Confidence 9999999998 589999998765 222 12222 12355565 7888864 99999999999999999999
Q ss_pred HHhcCCcEEEEEeeeccCCCHHHH--HHH-Hh--CCCeEEEEecC
Q 020510 260 LAKEGISAEVINLRSIRPLDRSTI--NAS-VR--KTNRLVTVEEG 299 (325)
Q Consensus 260 L~~~Gi~~~Vi~~~~l~P~d~~~l--~~~-~~--~~~~vvvvEe~ 299 (325)
|+++||+++|||++|++|||.+.+ ++. +. .++ .|++|+|
T Consensus 571 L~~~gi~~~Vv~~~~~kp~d~~~~~y~~~vl~~~~~~-~vtvE~~ 614 (663)
T PRK12753 571 LTAEGRNVRVVSMPSTDIFDAQDEAYRESVLPSNVTA-RVAVEAG 614 (663)
T ss_pred HHhcCCCcEEEECCcCCccchhHHHHHHhhcccccce-EEEEccC
Confidence 999999999999999999999976 221 11 233 4999998
No 23
>PLN02790 transketolase
Probab=100.00 E-value=2.8e-44 Score=368.48 Aligned_cols=259 Identities=17% Similarity=0.199 Sum_probs=214.0
Q ss_pred cccCcccccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCcc-ccchhHHHH-hCCCceeechhhHHHHHHHHHHHhc
Q 020510 28 RNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY-KISKGLLEK-YGPERVLDTPITEAGFTGIGVGAAY 105 (325)
Q Consensus 28 ~~~~~~~~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~-~~~~~~~~~-~gp~R~i~~GIaE~~~vg~A~GlA~ 105 (325)
.+|..+.+++++|++|++.|.++.+.+++++++++|+..++.++ .-+..|+++ | |+||||+||+||+|+++|+|||+
T Consensus 335 ~~~~~~~~~~a~R~~~~~~l~~i~~~~p~iv~gsaDl~~s~~t~~~~~~~f~~~~~-p~Rfi~~GIaEq~mv~~AaGlA~ 413 (654)
T PLN02790 335 PTFTPEDPADATRNLSQKCLNALAKVLPGLIGGSADLASSNMTLLKDFGDFQKDTP-EERNVRFGVREHGMGAICNGIAL 413 (654)
T ss_pred hhhcccCcchHHHHHHHHHHHHHHhhCCCeEEEECCCCcccccccccchhhhhcCC-CCCeEEeeechHHHHHHHHHHHh
Confidence 34443446789999999999999999999999999998665432 112678888 6 89999999999999999999999
Q ss_pred c--CCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC-CCC-CCCCCCcchHH--HHHHhcCCCcEEE
Q 020510 106 Y--GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAA-AGVGAQHSHCY--AAWYASVPGLKVL 179 (325)
Q Consensus 106 ~--G~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~-~g~G~tHs~~~--~a~~~~iP~~~V~ 179 (325)
. |++||++||.. |+.|+++|||+. |+ +++||++++.+ |.+ +.+|+|| |.+ .++||+||||+|+
T Consensus 414 ~G~G~~P~~~tf~~-F~~~~~~~ir~~-al--------~~lpV~~v~thdg~~~G~DG~TH-q~iedla~lR~iPnl~V~ 482 (654)
T PLN02790 414 HSSGLIPYCATFFV-FTDYMRAAMRLS-AL--------SEAGVIYVMTHDSIGLGEDGPTH-QPIEHLASLRAMPNILML 482 (654)
T ss_pred cCCCcEEEEEecHH-HHHHHHHHHHHH-Hh--------cCCCeEEEEECCceeecCCCCCc-ccHHHHHHhcCCCCcEEE
Confidence 5 69999999955 567999999886 87 58999998753 554 4599999 644 4999999999999
Q ss_pred eeCCHHHHHHHHHHhHh-CCCcEEEEeCccccCcccCccccccCC-CccccCCceEEeeeC-----CcEEEEEechhHHH
Q 020510 180 SPYSSEDARGLLKAAIR-DPDPVVFLENELLYGESFPVSAEVLDS-SFCLPIGKAKIEREG-----KDVTITAFSKIVGL 252 (325)
Q Consensus 180 ~P~d~~e~~~~l~~a~~-~~~Pv~ir~~~~l~~~~~p~~~~~~~~-~~~~~~gk~~vl~~G-----~dv~Iia~G~~~~~ 252 (325)
.|+|++|+..+++++++ .++|+|||.+|. ..| .++.+ ...++.|+ ++++++ .|++||++|+++++
T Consensus 483 ~PaD~~E~~~~l~~al~~~~gP~~irl~R~----~~~---~~~~~~~~~~~~G~-~vl~~~~~~~~~dv~iia~G~~v~~ 554 (654)
T PLN02790 483 RPADGNETAGAYKVAVTNRKRPTVLALSRQ----KVP---NLPGTSIEGVEKGG-YVISDNSSGNKPDLILIGTGSELEI 554 (654)
T ss_pred eCCCHHHHHHHHHHHHHcCCCCEEEEecCC----CCC---CCCCCcccccccCc-EEEEeCCCCCCCCEEEEEcCHHHHH
Confidence 99999999999999997 579999998875 222 12221 24467786 666764 79999999999999
Q ss_pred HHHHHHHHHhcCCcEEEEEeeeccCCCHHHHH---HHH-hCCCeEEEEecCCCCCCHHH
Q 020510 253 SLKAAEILAKEGISAEVINLRSIRPLDRSTIN---ASV-RKTNRLVTVEEGFPQHGVGA 307 (325)
Q Consensus 253 a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~---~~~-~~~~~vvvvEe~~~~GGlg~ 307 (325)
|++|++.|+++||+++|||++|++|||.+.+. +.+ ++++.+|++|||.. +|+++
T Consensus 555 Al~Aa~~L~~~gi~~~VV~~~~ikpld~~~~~y~~~~~~~~~~~vvtiE~~~~-~G~~~ 612 (654)
T PLN02790 555 AAKAAKELRKEGKKVRVVSMVCWELFEEQSDEYKESVLPSSVTARVSVEAGST-FGWEK 612 (654)
T ss_pred HHHHHHHHHhcCCceEEEecCccchhhhhHHHHHHhhhccccceEEEecCccc-hhHHH
Confidence 99999999999999999999999999998744 566 56678999999986 77765
No 24
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=100.00 E-value=7.8e-44 Score=367.92 Aligned_cols=265 Identities=18% Similarity=0.198 Sum_probs=219.1
Q ss_pred cccccHHHHHHHHHHHHHhc---CCcEEEEecCCCCccCcccc---------------------chhHHHHhCCCceeec
Q 020510 34 VKQMMVREALNSALDEEMSA---DPKVFLMGEEVGEYQGAYKI---------------------SKGLLEKYGPERVLDT 89 (325)
Q Consensus 34 ~~~~s~~~a~~~~L~~l~~~---d~~iv~l~~D~~~~~g~~~~---------------------~~~~~~~~gp~R~i~~ 89 (325)
++++|++.||++.|..|++. .++||.+.+|+++++|.-++ ...+++.+ |+||||+
T Consensus 487 ~~~~sT~~Af~r~l~~L~~~~~~~~riV~i~pD~a~t~gm~~~f~~~gi~~~~gq~y~~~d~~~~~~y~e~~-p~R~ie~ 565 (889)
T TIGR03186 487 GKEMSTTMAIVRMLGALLKDAELGPRIVPIVADEARTFGMANLFRQVGIYSPLGQRYEPEDLGSMLYYREDT-DGQILEE 565 (889)
T ss_pred CCcccHHHHHHHHHHHHHhCccccCCEEEeCCcccccCCchhhhccccccCcccccCCccchHHHHHHhhcC-CCcEEEe
Confidence 48899999999998877765 68899999999876522111 13466778 9999999
Q ss_pred hhhHHHHHH--HHHHHhcc----CCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC-CC-C-CCCCC
Q 020510 90 PITEAGFTG--IGVGAAYY----GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GA-A-AGVGA 160 (325)
Q Consensus 90 GIaE~~~vg--~A~GlA~~----G~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~-~-~g~G~ 160 (325)
||+||||++ +|+|+|++ |++||+.+|+.|.++|++|||+++ |+ ++.++++++.. |. + +++|.
T Consensus 566 GIAEqnmv~~~iAAGlA~a~~G~g~iPf~~tya~F~~~Ra~Dqir~a-~~--------~~a~v~lvG~~aG~tTlg~eG~ 636 (889)
T TIGR03186 566 GISEAGAISSWIAAATSYSVHDLPMLPFYIYYSMFGFQRIGDLIWAA-AD--------QRARGFLIGATSGKTTLGGEGL 636 (889)
T ss_pred chhhHHHHHHHHHHHHhhhhcCCCceEEEEehHHhHhhhHHHHHHHH-hh--------cCCCcEEEEECCCccCCCCCcc
Confidence 999999999 99999998 889999999776689999999998 76 46776666643 66 3 56899
Q ss_pred Ccch--HHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHh------CCCcEEEEeCccccCcccCccccccCCC-ccccCCc
Q 020510 161 QHSH--CYAAWYASVPGLKVLSPYSSEDARGLLKAAIR------DPDPVVFLENELLYGESFPVSAEVLDSS-FCLPIGK 231 (325)
Q Consensus 161 tHs~--~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~------~~~Pv~ir~~~~l~~~~~p~~~~~~~~~-~~~~~gk 231 (325)
|| | .+.+++|++|||+|+.|+|+.|+..+++++++ .++|+|||..+..+.. +.+++++ ..++.|+
T Consensus 637 tH-q~~eDial~r~iPn~tv~~PaDa~E~a~iv~~~~~rm~~~~~~gp~YlRl~r~~~~~-----p~~~~~~~~~~~~gi 710 (889)
T TIGR03186 637 QH-QDGTSHLAASTVPNCRAWDPAFAYEVAVIVDEGMREMLERQRDEFYYLTVTNENYAQ-----PSLPEDRLDAVRRGI 710 (889)
T ss_pred cc-cchHhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCCC-----CCcCCCcccchhcch
Confidence 99 5 44599999999999999999999999999877 5689999977652211 2223332 2344554
Q ss_pred --e-EEee----eCCcEEEEEechhHHHHHHHHHHHHhc-CCcEEEEEeeeccCCCHHHHHHHHhCCCeEEEEecC---C
Q 020510 232 --A-KIER----EGKDVTITAFSKIVGLSLKAAEILAKE-GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEG---F 300 (325)
Q Consensus 232 --~-~vl~----~G~dv~Iia~G~~~~~a~~Aa~~L~~~-Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe~---~ 300 (325)
+ ++++ +|+|++|+++|.++++|++|++.|+++ ||+++|||++|+||||++.+. ++++++|+++||| +
T Consensus 711 ~kg~y~l~~~~~~g~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~V~sv~SikpLdrd~i~--a~r~~~l~t~Eeh~~~~ 788 (889)
T TIGR03186 711 LKGMYPLDPAALAAARVQLLGSGAILGEVQAAARLLRDDWGIDAAVWSVTSFTELARDGRA--AERAQRLGDAERPPSPH 788 (889)
T ss_pred hheeeEeeccCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCCCeEEEECCCCCHhHHHHHH--HHHhCCccccccccccc
Confidence 5 7777 578999999999999999999999998 999999999999999999986 7889999999999 9
Q ss_pred CCCCHHH-------------HHHHHHcCC
Q 020510 301 PQHGVGA-------------EIWCAFFPP 316 (325)
Q Consensus 301 ~~GGlg~-------------~v~~~l~~~ 316 (325)
+.||||+ .|+++|.+.
T Consensus 789 v~ggLg~~~~p~va~~D~~~avae~i~~~ 817 (889)
T TIGR03186 789 VAQALGATQGPVIAATDYVRAVPELIRAY 817 (889)
T ss_pred HhhhhCCCCCCeeeecchHHHHHHHHHhh
Confidence 9999999 999999764
No 25
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=100.00 E-value=4.1e-43 Score=362.61 Aligned_cols=266 Identities=15% Similarity=0.133 Sum_probs=221.6
Q ss_pred cccccHHHHHHHHHHHHHhc---CCcEEEEecCCCCccCccc---------------------cchhHHHHhCCCceeec
Q 020510 34 VKQMMVREALNSALDEEMSA---DPKVFLMGEEVGEYQGAYK---------------------ISKGLLEKYGPERVLDT 89 (325)
Q Consensus 34 ~~~~s~~~a~~~~L~~l~~~---d~~iv~l~~D~~~~~g~~~---------------------~~~~~~~~~gp~R~i~~ 89 (325)
++++++|+||+++|.+|++. +++||++++|++.+.+.-+ ....|+++| |+||||+
T Consensus 492 ~~~~sT~~Afgr~L~~L~~~~~~~~riV~i~pD~a~t~g~~~~f~~~gi~~~~gq~y~~~d~~~~~~yke~~-PgRf~e~ 570 (891)
T PRK09405 492 EREISTTMAFVRILNILLKDKEIGKRIVPIIPDEARTFGMEGLFRQIGIYNPHGQLYTPVDRDQLMYYKESK-DGQILQE 570 (891)
T ss_pred CCcccHHHHHHHHHHHHHhccccCCcEEEeccccccccCcchhhccccccccccccccccccHHHHHHHHcC-CCcEEEe
Confidence 48899999999999999996 9999999999987555411 124588899 9999999
Q ss_pred hhhHHHHHH--HHHHHhcc----CCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC-CCC-CCCCCC
Q 020510 90 PITEAGFTG--IGVGAAYY----GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAA-AGVGAQ 161 (325)
Q Consensus 90 GIaE~~~vg--~A~GlA~~----G~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~-~g~G~t 161 (325)
||+||||++ +|+|+|.+ |++||+.+|+.|.++|++|||++++++ ++.++++++.. |.+ ++.|.|
T Consensus 571 GIAEqnmv~~~vAAGlA~a~~G~g~iPF~~tya~F~~~Ra~Dqir~a~~~--------~~~~v~iggt~gg~tl~~eG~q 642 (891)
T PRK09405 571 GINEAGAMASWIAAATSYSTHGEPMIPFYIYYSMFGFQRIGDLAWAAGDQ--------RARGFLLGGTAGRTTLNGEGLQ 642 (891)
T ss_pred chhhhHHHHHHHHHHHhhhhcCCCceEEEEehHHhhhhhHHHHHHHHHHh--------cCCCeEEEEECccccCCCCccc
Confidence 999999999 99999988 889999999777699999999999997 57888888765 555 568999
Q ss_pred cc-hHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHh----CCC--cEEEEeCccccCcccCccccccCCCccccCCce-E
Q 020510 162 HS-HCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPD--PVVFLENELLYGESFPVSAEVLDSSFCLPIGKA-K 233 (325)
Q Consensus 162 Hs-~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~--Pv~ir~~~~l~~~~~p~~~~~~~~~~~~~~gk~-~ 233 (325)
|+ ..+.+++|++|||+|++|+|+.|+..+++++++ .++ |.|+|.... +++. +..+ +++.+.++|. +
T Consensus 643 Hqdg~s~~l~raiPn~tv~~PADa~E~a~iv~~~l~rm~~~~~~~~yYlrl~ne----~~~~-~~~p-e~~~~~igKg~y 716 (891)
T PRK09405 643 HEDGHSHILASTIPNCVSYDPAFAYEVAVIVQDGLRRMYGEQENVFYYITVMNE----NYHQ-PAMP-EGAEEGILKGMY 716 (891)
T ss_pred CCchhhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCC----CCCC-CCCC-cccccccceEEE
Confidence 93 244589999999999999999999999999877 445 777875311 1111 1122 3456788886 9
Q ss_pred EeeeCC------cEEEEEechhHHHHHHHHHHHHh-cCCcEEEEEeeeccCCCHHHHHHHH---------hCCCeEEEEe
Q 020510 234 IEREGK------DVTITAFSKIVGLSLKAAEILAK-EGISAEVINLRSIRPLDRSTINASV---------RKTNRLVTVE 297 (325)
Q Consensus 234 vl~~G~------dv~Iia~G~~~~~a~~Aa~~L~~-~Gi~~~Vi~~~~l~P~d~~~l~~~~---------~~~~~vvvvE 297 (325)
++++|. |++|+++|.++++|++|++.|++ +||+++|||++|+||||.+.+.... +++..|+++|
T Consensus 717 ~Lr~g~~~~~~~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~Visv~SikpLdrd~i~~~~~~~l~~~~~~~~~~V~t~e 796 (891)
T PRK09405 717 KLETAEGKKGKPKVQLLGSGTILREVLEAAEILAEDYGVAADVWSVTSFNELARDGQDVERWNMLHPTEEPRVPYVTQVL 796 (891)
T ss_pred EeccCCCCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCCCeEEEECCCCCHhhHHHHHHHHHhhcCcccccccchhhhhh
Confidence 999976 89999999999999999999998 6999999999999999999987766 5677899999
Q ss_pred cCCCCCCHH-------HHHHHHHcCC
Q 020510 298 EGFPQHGVG-------AEIWCAFFPP 316 (325)
Q Consensus 298 e~~~~GGlg-------~~v~~~l~~~ 316 (325)
+| .||++ +.|+++|.+.
T Consensus 797 e~--~gG~~Vtv~D~~~aVae~la~~ 820 (891)
T PRK09405 797 KG--AEGPVVAATDYMKLFAEQIRAF 820 (891)
T ss_pred cc--cCCcEEEecchHHHHHHHHHHh
Confidence 98 68888 8899988654
No 26
>PRK12754 transketolase; Reviewed
Probab=100.00 E-value=9.1e-43 Score=355.67 Aligned_cols=247 Identities=18% Similarity=0.198 Sum_probs=201.8
Q ss_pred cccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCcc-ccchhHHHHhCCCceeechhhHHHHHHHHHHHhc-cCCeeE
Q 020510 34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY-KISKGLLEKYGPERVLDTPITEAGFTGIGVGAAY-YGLKPV 111 (325)
Q Consensus 34 ~~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~-~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~-~G~~p~ 111 (325)
.+++++|++|+++|.++++.+++++++++|++.++.+. .-...|.++| |+||||+||+||+|+++|+|||+ .|++||
T Consensus 352 ~~~~atR~~~~~~L~~la~~~~~lv~~sADl~~s~~~~~~~~~~f~~~~-p~r~i~~GIaE~~Mv~iaaGlA~~~G~~Pf 430 (663)
T PRK12754 352 PAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDA-AGNYIHYGVREFGMTAIANGIALHGGFLPY 430 (663)
T ss_pred ccchHHHHHHHHHHHHHHhhCCCEEEEeCCcccccCccccccccccccC-CCCeEeeccchhhHHHHHhhHHhcCCCeEE
Confidence 35779999999999999999999999999997665431 1125688889 99999999999999999999999 689999
Q ss_pred EecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC-CCCC-CCCCCcchHHH--HHHhcCCCcEEEeeCCHHHH
Q 020510 112 VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAA-GVGAQHSHCYA--AWYASVPGLKVLSPYSSEDA 187 (325)
Q Consensus 112 v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~~-g~G~tHs~~~~--a~~~~iP~~~V~~P~d~~e~ 187 (325)
++||+ .|+.|++||||++ |+ +++||++++.+ |.+. .+|+|| |.+| ++||+||||+|+.|+|..|+
T Consensus 431 ~~tf~-~F~~r~~~qir~~-a~--------~~l~V~~v~th~gi~~G~DG~TH-q~iEdla~lR~iPn~~V~~PaD~~E~ 499 (663)
T PRK12754 431 TSTFL-MFVEYARNAVRMA-AL--------MKQRQVMVYTHDSIGLGEDGPTH-QPVEQVASLRVTPNMSTWRPCDQVES 499 (663)
T ss_pred EEeeH-HHHHHHHHHHHHH-HH--------cCCCeEEEEECCccccCCCCCCc-ccHHHHHHHhcCCCcEEecCCCHHHH
Confidence 99995 5678999999996 87 47999888754 6654 599999 6554 99999999999999999999
Q ss_pred HHHHHHhHhC-CCcEEEEeCccccCcccCccccccC--C-CccccCCceEEeeeCC---cEEEEEechhHHHHHHHHHHH
Q 020510 188 RGLLKAAIRD-PDPVVFLENELLYGESFPVSAEVLD--S-SFCLPIGKAKIEREGK---DVTITAFSKIVGLSLKAAEIL 260 (325)
Q Consensus 188 ~~~l~~a~~~-~~Pv~ir~~~~l~~~~~p~~~~~~~--~-~~~~~~gk~~vl~~G~---dv~Iia~G~~~~~a~~Aa~~L 260 (325)
..+++++++. ++|+|||.+|. +.| .++. . ...+..|+ ++++++. |++||++|+++++|++|++.|
T Consensus 500 ~~~~~~a~~~~~gP~yirl~R~----~~p---~~~~~~~~~~~~~~G~-~vl~~~~~~~dv~iiatGs~v~~Al~Aa~~L 571 (663)
T PRK12754 500 AVAWKYGVERQDGPTALILSRQ----NLA---QQERTEEQLANIARGG-YVLKDCAGQPELIFIATGSEVELAVAAYEKL 571 (663)
T ss_pred HHHHHHHHhCCCCCEEEEeCCC----CCC---CCCCccchhhhcccCc-EEEEecCCCCCEEEEEECHHHHHHHHHHHHH
Confidence 9999999987 69999998765 222 1221 1 13455665 7788864 999999999999999999999
Q ss_pred HhcCCcEEEEEeeeccCCCHHH--HHHHHhCCC--eEEEEecCC
Q 020510 261 AKEGISAEVINLRSIRPLDRST--INASVRKTN--RLVTVEEGF 300 (325)
Q Consensus 261 ~~~Gi~~~Vi~~~~l~P~d~~~--l~~~~~~~~--~vvvvEe~~ 300 (325)
+++||+++|||++|++|||++. .++.+-... ..|++|.+.
T Consensus 572 ~~~Gi~~~Vvs~~s~kp~d~q~~~y~~~il~~~~~~~v~iE~~~ 615 (663)
T PRK12754 572 TAEGVKARVVSMPSTDAFDKQDAAYRESVLPKAVSARVAVEAGI 615 (663)
T ss_pred HhhCCCcEEEEcCccCcCCCCCHHHHHhcCccccccceEeeccc
Confidence 9999999999999999999872 222222221 248888864
No 27
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=100.00 E-value=6.5e-42 Score=295.24 Aligned_cols=166 Identities=58% Similarity=1.028 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCC-ceeechhhHHHHHHHHHHHhccCCeeEEecccccH
Q 020510 41 EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPE-RVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNF 119 (325)
Q Consensus 41 ~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~-R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~~~~f 119 (325)
++++++|.+++++|++++++++|++.++|++..+++|+++| |+ ||||+||+||+|+|+|+|||+.|++||+++.++.|
T Consensus 1 ~~~~~~l~~~~~~~~~vv~l~~D~~~~~g~~~~~~~~~~~~-p~~R~~~~gIaEq~~vg~AaGlA~~G~~pi~~~~~a~F 79 (167)
T cd07036 1 QAINEALDEEMERDPRVVVLGEDVGDYGGVFKVTKGLLDKF-GPDRVIDTPIAEAGIVGLAVGAAMNGLRPIVEIMFADF 79 (167)
T ss_pred CHHHHHHHHHHhcCCCEEEECcccccCCCcchHhHHHHHhC-CCceEEeCCCcHHHHHHHHHHHHHcCCEEEEEeehHHH
Confidence 47899999999999999999999976667777779999999 88 99999999999999999999999999999544777
Q ss_pred HHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCCcchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCC
Q 020510 120 SMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPD 199 (325)
Q Consensus 120 ~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~ 199 (325)
++|++|||++++|+++|++|++.++||++++++|...++|+||+++++++||+||||+|++|+|+.|++.+++++++.++
T Consensus 80 l~ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg~~~~G~ths~~~~a~lr~iPg~~V~~Psd~~e~~~~l~~~~~~~~ 159 (167)
T cd07036 80 ALPAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGGGIGGGAQHSQSLEAWFAHIPGLKVVAPSTPYDAKGLLKAAIRDDD 159 (167)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCCCCCcChhhhhhHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCC
Confidence 88999999999999999999999999999987655556899998999999999999999999999999999999999999
Q ss_pred cEEEEeCc
Q 020510 200 PVVFLENE 207 (325)
Q Consensus 200 Pv~ir~~~ 207 (325)
|++++++|
T Consensus 160 P~~~~e~k 167 (167)
T cd07036 160 PVIFLEHK 167 (167)
T ss_pred cEEEEecC
Confidence 99998764
No 28
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=100.00 E-value=1e-39 Score=338.66 Aligned_cols=254 Identities=17% Similarity=0.173 Sum_probs=203.6
Q ss_pred cccccHHHHHHHHHHHHHhc---CCcEEEEecCCCCccCcccc---------------------chhHHHHhCCCceeec
Q 020510 34 VKQMMVREALNSALDEEMSA---DPKVFLMGEEVGEYQGAYKI---------------------SKGLLEKYGPERVLDT 89 (325)
Q Consensus 34 ~~~~s~~~a~~~~L~~l~~~---d~~iv~l~~D~~~~~g~~~~---------------------~~~~~~~~gp~R~i~~ 89 (325)
++++++|++|+++|.++++. +++||++++|+++++|.-++ ...|+++| |+|||++
T Consensus 500 ~~~isTr~Afgr~L~~L~k~~~~~~~iV~i~aDla~t~gm~~~f~~~~i~~~~gq~y~~~d~~~~~~yke~~-pgR~ie~ 578 (896)
T PRK13012 500 GKEMSTTMAFVRMLGNLLKDKALGPRIVPIVADEARTFGMANLFRQVGIYSPLGQLYEPEDAGSLLYYREAK-DGQILEE 578 (896)
T ss_pred CCcchHHHHHHHHHHHHHhccccCCCEEEeccccccccCcccccccccccccccccccccchhHHhhhhhCC-CCcEEec
Confidence 47899999999999999988 99999999999865533111 23467889 9999999
Q ss_pred hhhHHHHHH--HHHHHhcc----CCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC-CCC-CCCCCC
Q 020510 90 PITEAGFTG--IGVGAAYY----GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAA-AGVGAQ 161 (325)
Q Consensus 90 GIaE~~~vg--~A~GlA~~----G~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~-~g~G~t 161 (325)
||+||+|++ +|+|+|++ |++||+.+|+.|..+|++||+++++++ ...++++++.. +.+ +++|+|
T Consensus 579 GIaEqnm~~~~~AAG~a~a~~G~g~iPf~~tfs~F~~~R~~Dqir~a~~~--------~~~~vlig~T~gg~tlg~dG~T 650 (896)
T PRK13012 579 GITEAGAISSWIAAATSYSVHGLPMLPFYIYYSMFGFQRVGDLIWAAADQ--------RARGFLLGATAGRTTLGGEGLQ 650 (896)
T ss_pred chhhhhhhHHHHHHHhhHHhcCCCcEEEEEehHHHHHHHHHHHHHHHHhc--------ccCCeEEEEeCcccccCCCCCC
Confidence 999999999 89999877 679999999776689999999998885 46678887765 444 569999
Q ss_pred cchHH--HHHHhcCCCcEEEeeCCHHHHHHHHHHhHh----C--CCcEEEEeCccccCcccCccccccCC-CccccCCce
Q 020510 162 HSHCY--AAWYASVPGLKVLSPYSSEDARGLLKAAIR----D--PDPVVFLENELLYGESFPVSAEVLDS-SFCLPIGKA 232 (325)
Q Consensus 162 Hs~~~--~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~--~~Pv~ir~~~~l~~~~~p~~~~~~~~-~~~~~~gk~ 232 (325)
| |+. .+++|+||||+|+.|+|..|+..+++.+++ . +.|+|||..|..+.+ +.++++ +..+..|+
T Consensus 651 H-Q~~eslal~RaIPN~~V~~PADa~E~a~iv~~al~~m~~~~~~~p~YIrL~r~~~~~-----p~~~~~~~~~i~kG~- 723 (896)
T PRK13012 651 H-QDGHSHLLASTIPNCRAYDPAFAYELAVIVDDGMRRMLEEQEDVFYYLTVMNENYAQ-----PALPEGAEEGILKGM- 723 (896)
T ss_pred C-cchHhHHHHHhCCCCEEEeCCCHHHHHHHHHHHHHHHHhccCCCeEEEEecCCCCCC-----CCCCccchhccccCc-
Confidence 9 655 489999999999999999999999998873 2 579999976653321 122222 34455666
Q ss_pred EEe---eeCCcEEEEEechhHHHHHHHHHHHHhc-CCcEEEEEeeeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHH--
Q 020510 233 KIE---REGKDVTITAFSKIVGLSLKAAEILAKE-GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVG-- 306 (325)
Q Consensus 233 ~vl---~~G~dv~Iia~G~~~~~a~~Aa~~L~~~-Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg-- 306 (325)
+++ ++|.|++||++|+++++|++|+++|+++ ||+++|||++|++|||.+.+.. |||+..||++
T Consensus 724 y~l~~~~~g~dv~LiasGs~v~eAl~AAe~L~~e~GI~a~V~sv~S~kpLd~d~i~~-----------E~hn~~gglg~~ 792 (896)
T PRK13012 724 YRLAAAAEAPRVQLLGSGAILREVLAAARLLADDWGVDADVWSVTSFTELRRDGLAA-----------ERANLLGPAEEA 792 (896)
T ss_pred EEEeccCCCCCEEEEEecHHHHHHHHHHHHHHhhhCCCeEEEECCCCCHhHHHHHHH-----------HHHhhcCCCccc
Confidence 555 3467999999999999999999999999 9999999999999999998732 7777777777
Q ss_pred --HHHHHHHc
Q 020510 307 --AEIWCAFF 314 (325)
Q Consensus 307 --~~v~~~l~ 314 (325)
+.+.+.|.
T Consensus 793 ~~sy~~~~l~ 802 (896)
T PRK13012 793 RVPYVTQCLA 802 (896)
T ss_pred cccHHHHhhc
Confidence 54444443
No 29
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=100.00 E-value=2.7e-36 Score=257.99 Aligned_cols=153 Identities=29% Similarity=0.465 Sum_probs=138.4
Q ss_pred HHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEecccccHH
Q 020510 41 EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFS 120 (325)
Q Consensus 41 ~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~~~~f~ 120 (325)
++|+++|.+++++|++++++++|++.+++ +.+|.++| |+||||+||+|++|+++|+|+|+.|++|+++++ ++|+
T Consensus 1 ~~~~~~l~~~~~~~~~~v~~~~Dl~~~~~----~~~~~~~~-p~r~i~~gIaE~~~vg~A~GlA~~G~~pi~~~~-~~f~ 74 (156)
T cd07033 1 KAFGEALLELAKKDPRIVALSADLGGSTG----LDKFAKKF-PDRFIDVGIAEQNMVGIAAGLALHGLKPFVSTF-SFFL 74 (156)
T ss_pred ChHHHHHHHHHhhCCCEEEEECCCCCCCC----cHHHHHhC-CCCeEEeChhHHHHHHHHHHHHHCCCeEEEEEC-HHHH
Confidence 36899999999999999999999975433 48899999 999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHhhccccCCCCccCCEEEEeCC-CCCC-CCCCCcc-hHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhC
Q 020510 121 MQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAA-GVGAQHS-HCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD 197 (325)
Q Consensus 121 ~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~~-g~G~tHs-~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~ 197 (325)
+|++|||++++|+ +++|+++++++ |... .+|+||+ ++++++++++||++|++|+|++|++.+++++++.
T Consensus 75 ~ra~dqi~~~~a~--------~~~pv~~~~~~~g~~~~~~G~tH~~~~~~a~~~~iPg~~v~~Ps~~~~~~~ll~~a~~~ 146 (156)
T cd07033 75 QRAYDQIRHDVAL--------QNLPVKFVGTHAGISVGEDGPTHQGIEDIALLRAIPNMTVLRPADANETAAALEAALEY 146 (156)
T ss_pred HHHHHHHHHHHhc--------cCCCeEEEEECCcEecCCCCcccchHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHhC
Confidence 9999999999997 47999999875 4544 5999994 4667999999999999999999999999999999
Q ss_pred CCcEEEEeCc
Q 020510 198 PDPVVFLENE 207 (325)
Q Consensus 198 ~~Pv~ir~~~ 207 (325)
++|+|+|.+|
T Consensus 147 ~~P~~irl~~ 156 (156)
T cd07033 147 DGPVYIRLPR 156 (156)
T ss_pred CCCEEEEeeC
Confidence 9999999753
No 30
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=100.00 E-value=2.2e-35 Score=306.88 Aligned_cols=272 Identities=19% Similarity=0.205 Sum_probs=226.7
Q ss_pred ccccHHHHHHHHHHHHHhcCCcEEEEecCCCC--------------ccCccccchhHHHHhCCCceeechhhHHHHHHHH
Q 020510 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGE--------------YQGAYKISKGLLEKYGPERVLDTPITEAGFTGIG 100 (325)
Q Consensus 35 ~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~--------------~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A 100 (325)
+.++|.+|...++.++|++|++|+++++|++. .+|.|+.+.+|.++||+.|++|++|+|.+++|++
T Consensus 584 ~~~~~~~A~~~A~~~~l~~~~~V~l~GeDv~rGtFshRHavl~dq~~g~~~~~~~~l~~~~g~~rV~nsplSE~a~~G~~ 663 (929)
T TIGR00239 584 KLFDWGGAENLAFATLVDDGIPVRLSGEDSERGTFFQRHAVLHDQSNGSTYTPLQHLHNGQGAFRVWNSVLSEESVLGFE 663 (929)
T ss_pred CCccHHHHHHHHHHHHHhcCCCEEEEeeeCCCcccccccccccccccCceeecccchhhhcCCeeEEcCCccHHHHHHHH
Confidence 45889999999999999999999999999987 5666799999999999999999999999999999
Q ss_pred HHHhccCCeeE--EecccccHHH---HHHHHHHHH-HhhccccCCCCccCCEEEEeCCCCCCCCCCCcchHHHHHH--hc
Q 020510 101 VGAAYYGLKPV--VEFMTFNFSM---QAIDHIINS-AAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWY--AS 172 (325)
Q Consensus 101 ~GlA~~G~~p~--v~~~~~~f~~---ra~dqi~~~-~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tHs~~~~a~~--~~ 172 (325)
.|+|+.|.+|+ ++.++.+|++ .++|||.+. .+++++++| +|++.+.|..++.+.+||+++|++| .+
T Consensus 664 ~G~a~~g~~~l~i~E~qfgDF~~~AQv~~Dq~i~~~~~K~~~~sg------lv~~~p~G~~g~g~~hsS~~~E~~lql~~ 737 (929)
T TIGR00239 664 YGYATTSPRTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGQMSG------LVMLLPHGYEGQGPEHSSGRLERFLQLAA 737 (929)
T ss_pred HhHHhcCCCCceEEEEeccchhcchHHHHHHHHHHHHHHhcCccC------eEEEecCcCCCCCchhhccCHHHHHHHhC
Confidence 99999998774 9999999987 779999988 578766544 8999888855445566678999999 88
Q ss_pred CCCcEEEeeCCHHHHHHHHH-HhHhC-CCcEEEEeCccccCcccC--ccccccCCCccccCCceE-----EeeeCCcEEE
Q 020510 173 VPGLKVLSPYSSEDARGLLK-AAIRD-PDPVVFLENELLYGESFP--VSAEVLDSSFCLPIGKAK-----IEREGKDVTI 243 (325)
Q Consensus 173 iP~~~V~~P~d~~e~~~~l~-~a~~~-~~Pv~ir~~~~l~~~~~p--~~~~~~~~~~~~~~gk~~-----vl~~G~dv~I 243 (325)
.|||+|+.|++|.|++.+|+ ++++. ++|+++.+++.||+.+.. ...+++++.|..+++... +.+++.+.+|
T Consensus 738 ~~gl~Vv~pstpad~~~lLrrqa~r~~~~Pvi~~~~K~L~r~~~a~S~~~e~~~~~f~~~i~~~~~~~~~~~~~~v~~vv 817 (929)
T TIGR00239 738 EQNMQVCVPTTPAQVFHILRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELAEGTFQPVIGEIEESGLSLDPEGVKRLV 817 (929)
T ss_pred CCCCEEEecCCHHHHHHHHHHHHHhCCCCCEEEeccHhhhcCccccCccccCCCCCcccccccccccccccCccCCcEEE
Confidence 99999999999999999999 79996 899999999998864321 113455566665664321 2233445556
Q ss_pred EEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCC---eEEEEecCCCCCCHHHHHHHHHc
Q 020510 244 TAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN---RLVTVEEGFPQHGVGAEIWCAFF 314 (325)
Q Consensus 244 ia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~---~vvvvEe~~~~GGlg~~v~~~l~ 314 (325)
+++| ++..++++ +.++++|+++.|||+++|+|||.++|.++++||. ++|++.|...+.|-.+.|...|.
T Consensus 818 ~~sg-~v~~~l~~-~~~~~~~~~v~iirle~L~Pf~~~~i~~sl~k~~~~~~~vw~qEep~n~Gaw~~v~~rl~ 889 (929)
T TIGR00239 818 LCSG-KVYYDLHE-QRRKNGQKDVAIVRIEQLYPFPHKAVKEVLQQYPNLKEIVWCQEEPLNMGAWYYSQPHLR 889 (929)
T ss_pred EECc-hHHHHHHH-HHHhcCCCCEEEEEeeeeCCCCHHHHHHHHHhcCCCCeEEEEeccCCCCCCHHHHHHHHH
Confidence 6666 77777777 6677789999999999999999999999999996 79999999999999988887775
No 31
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=2.2e-35 Score=308.01 Aligned_cols=271 Identities=20% Similarity=0.204 Sum_probs=229.6
Q ss_pred ccccHHHHHHHHHHHHHhcCCcEEEEecCCCC--------------ccCccccchhHHHHhCCCceeechhhHHHHHHHH
Q 020510 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGE--------------YQGAYKISKGLLEKYGPERVLDTPITEAGFTGIG 100 (325)
Q Consensus 35 ~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~--------------~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A 100 (325)
+.++|.+|...++.++|++|++|++.++|++. .+|.|+.+.+|.++||++|++|++|+|.+++|++
T Consensus 582 ~~idw~~Ae~lA~~s~l~~~~~v~l~GeDv~rgtFshRHavl~dq~~gg~~~~~~~l~~~~g~~rV~nsplsE~~~~G~~ 661 (924)
T PRK09404 582 KPIDWGMAEALAFASLLDEGYPVRLSGQDSGRGTFSHRHAVLHDQKTGETYIPLNHLSEGQASFEVYDSPLSEEAVLGFE 661 (924)
T ss_pred CCcCHHHHHHHHHHHHHhCCCCEEEEeeeCCCCcccccchhccccCCCCEeccccchhhhcCCceEecCcchHHHHHHHH
Confidence 55789999999999999999999999999985 6789999999999999999999999999999999
Q ss_pred HHHhccCCee--EEecccccHHH---HHHHHHHHHH-hhccccCCCCccCCEEEEeCCCCCCCCCCCcchHHHHHHhcC-
Q 020510 101 VGAAYYGLKP--VVEFMTFNFSM---QAIDHIINSA-AKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASV- 173 (325)
Q Consensus 101 ~GlA~~G~~p--~v~~~~~~f~~---ra~dqi~~~~-a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tHs~~~~a~~~~i- 173 (325)
.|+|+.|.+| +++.++.+|++ .++||+.+.+ +++++++ ++|++.+.|..++.+.+||+++|++|.+.
T Consensus 662 ~G~a~~g~~~l~i~E~qfgDF~~~AQ~~~Dq~i~~~~~k~~~~s------glv~~~p~G~~g~g~~hsS~~~E~~l~~~~ 735 (924)
T PRK09404 662 YGYSTAEPNTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGRLS------GLVMLLPHGYEGQGPEHSSARLERFLQLCA 735 (924)
T ss_pred HHHHhcCCCCceEEEEeccccccchHHHHHHHHHHHHHHhcCcc------CeEEEecCcCCCCChhhhccCHHHHHHhCC
Confidence 9999999964 99999999988 6699999986 7776554 49999888854444455667999999776
Q ss_pred -CCcEEEeeCCHHHHHHHHHHh-HhC-CCcEEEEeCccccCcccCc--cccccCCCccccCCceEEeeeCCcE--EEEEe
Q 020510 174 -PGLKVLSPYSSEDARGLLKAA-IRD-PDPVVFLENELLYGESFPV--SAEVLDSSFCLPIGKAKIEREGKDV--TITAF 246 (325)
Q Consensus 174 -P~~~V~~P~d~~e~~~~l~~a-~~~-~~Pv~ir~~~~l~~~~~p~--~~~~~~~~~~~~~gk~~vl~~G~dv--~Iia~ 246 (325)
|||+|+.|++|.|++.+|+.+ ++. .+|+++.+++.||+.+... ..+++...|...+++.. .++++|+ +||||
T Consensus 736 ~~gl~Vv~pstpad~~~lLr~q~~r~~r~Pvv~~~pK~L~r~~~~~s~~~e~~~~~f~~vi~~~~-~~~~~~v~r~iv~~ 814 (924)
T PRK09404 736 EDNMQVCNPTTPAQYFHLLRRQALRPFRKPLVVMTPKSLLRHPLAVSSLEELAEGSFQPVIGDID-ELDPKKVKRVVLCS 814 (924)
T ss_pred CCCCEEEecCCHHHHHHHHHHHHhhCCCCCEEEeccHHHhCCCCCCCCHHHcCCCCceeeccccc-ccCccceeEEEEEc
Confidence 699999999999999999985 466 4999999999988753211 12343344554566655 5677899 79999
Q ss_pred chhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCC---eEEEEecCCCCCCHHHHHHHHHc
Q 020510 247 SKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN---RLVTVEEGFPQHGVGAEIWCAFF 314 (325)
Q Consensus 247 G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~---~vvvvEe~~~~GGlg~~v~~~l~ 314 (325)
|.+++.++++++.+. ..++.|||+++|+|||.++|.++++|++ ++|+++|...+.|.++.|...|.
T Consensus 815 Gk~~~~~~~a~~~~~--~~~v~ii~le~L~P~~~~~i~~~v~k~~~~~~~v~vqEe~~n~G~~~~~~~~~~ 883 (924)
T PRK09404 815 GKVYYDLLEARRKRG--IDDVAIVRIEQLYPFPHEELAAELAKYPNAKEVVWCQEEPKNQGAWYFIQHHLE 883 (924)
T ss_pred CHHHHHHHHHHHhCC--CCCEEEEEeeeeCCCCHHHHHHHHHhcCCCCeEEEEeeCCCCCCcHHHHHHHHH
Confidence 999999999988553 3499999999999999999999999984 89999999999999999987774
No 32
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=100.00 E-value=3.9e-34 Score=249.81 Aligned_cols=166 Identities=37% Similarity=0.587 Sum_probs=133.5
Q ss_pred ccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccC--CeeEE
Q 020510 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG--LKPVV 112 (325)
Q Consensus 35 ~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G--~~p~v 112 (325)
+|+++|++|+++|.+++++|++++++++|++ ++++..+.++...+||+||||+||+|++|+|+|+|||+.| ++|++
T Consensus 1 ~k~~~~~a~~~~l~~~~~~d~~vv~~~~D~~--~~~~~~~~~~~~~~~~~r~i~~gIaE~~~vg~a~GlA~~G~~~~~~~ 78 (178)
T PF02779_consen 1 KKISMRDAFGEALAELAEEDPRVVVIGADLG--GGTFGVTFGLAFPFGPGRFINTGIAEQNMVGMAAGLALAGGLRPPVE 78 (178)
T ss_dssp -EEEHHHHHHHHHHHHHHHTTTEEEEESSTH--HHHTSTTTTHHBHHTTTTEEE--S-HHHHHHHHHHHHHHSSSEEEEE
T ss_pred CCccHHHHHHHHHHHHHhhCCCEEEEECCcC--cchhhhhhhccccCCCceEEecCcchhhccceeeeeeecccccceeE
Confidence 5789999999999999999999999999997 4555555566677778899999999999999999999999 66666
Q ss_pred ecccccHHH----HHHHHHHHHHhhccccCCCCccCCEEEEeCCCC-CCCCCCCc-chHHHHHHhcCCCcEEEeeCCHHH
Q 020510 113 EFMTFNFSM----QAIDHIINSAAKSNYMSSGQISVPIVFRGPNGA-AAGVGAQH-SHCYAAWYASVPGLKVLSPYSSED 186 (325)
Q Consensus 113 ~~~~~~f~~----ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~-~~g~G~tH-s~~~~a~~~~iP~~~V~~P~d~~e 186 (325)
.+| +.|+. |++||++++.+++ +.+++ ++... |. .+++|+|| +++++++|+++|||+|++|+|+.|
T Consensus 79 ~~f-~~F~~~~q~r~~~~~~~~~~~~------~~~v~-v~~~~-g~~~~~~G~tH~s~~d~~~~~~iPg~~v~~Psd~~e 149 (178)
T PF02779_consen 79 STF-ADFLTPAQIRAFDQIRNDMAYG------QLPVP-VGTRA-GLGYGGDGGTHHSIEDEAILRSIPGMKVVVPSDPAE 149 (178)
T ss_dssp EEE-GGGGGGGHHHHHHHHHHHHHHH------TS-EE-EEEEE-SGGGSTTGTTTSSSSHHHHHHTSTTEEEEE-SSHHH
T ss_pred eec-cccccccchhhhhhhhhhhhcc------cceec-ceeec-CcccccccccccccccccccccccccccccCCCHHH
Confidence 666 55555 9999999999975 34555 22222 33 34578887 568889999999999999999999
Q ss_pred HHHHHHHhHh--CCCcEEEEeCccccC
Q 020510 187 ARGLLKAAIR--DPDPVVFLENELLYG 211 (325)
Q Consensus 187 ~~~~l~~a~~--~~~Pv~ir~~~~l~~ 211 (325)
++.+++++++ .++|+|||++|.+|+
T Consensus 150 ~~~~l~~a~~~~~~~P~~ir~~r~~~~ 176 (178)
T PF02779_consen 150 AKGLLRAAIRRESDGPVYIREPRGLYP 176 (178)
T ss_dssp HHHHHHHHHHSSSSSEEEEEEESSEES
T ss_pred HHHHHHHHHHhCCCCeEEEEeeHHhCC
Confidence 9999999999 679999999987653
No 33
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=99.97 E-value=3.5e-30 Score=254.29 Aligned_cols=263 Identities=20% Similarity=0.249 Sum_probs=208.2
Q ss_pred ccccCcccccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccc-cchhHH-HHhCCCceeechhhHHHHHHHHHHHh
Q 020510 27 LRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYK-ISKGLL-EKYGPERVLDTPITEAGFTGIGVGAA 104 (325)
Q Consensus 27 ~~~~~~~~~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~-~~~~~~-~~~gp~R~i~~GIaE~~~vg~A~GlA 104 (325)
++++...++.+.+|++..++|..+....|+++..++|++.|+.+.. -...|. +.| .+|+|..||.|++|.+++.|||
T Consensus 344 ~~~~~~~~~~~ATR~as~~~L~~l~~~~p~l~GGSADLa~Sn~T~~~~~~~~~~~~~-~gr~i~~GVREf~M~AimNGia 422 (663)
T COG0021 344 LPKFEANGKSIATRKASGKALNALAKKLPELIGGSADLAPSNLTKISGSGDFSPENY-AGRYIHFGVREFAMAAIMNGIA 422 (663)
T ss_pred hhhhcccccccchHHHHHHHHHHHHhhCccccccCcccccCccccccccCCCCCCCC-CCCeeEEeeHHHHHHHHHHhHH
Confidence 3444444456899999999999999999999999999997765531 112233 567 7999999999999999999999
Q ss_pred ccC-CeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeC-CCCC-CCCCCCcchHHH--HHHhcCCCcEEE
Q 020510 105 YYG-LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAA-AGVGAQHSHCYA--AWYASVPGLKVL 179 (325)
Q Consensus 105 ~~G-~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G~~-~g~G~tHs~~~~--a~~~~iP~~~V~ 179 (325)
+.| ++||..||.. |+.++..++|+. |+ +++|++++.. |+.. +++|+|| |++| +.||.|||+.|+
T Consensus 423 lhGg~~pyggTFlv-FsdY~r~AiRla-AL--------m~l~~~~V~THDSIgvGEDGPTH-qPiEqLa~LRaiPN~~V~ 491 (663)
T COG0021 423 LHGGFIPYGGTFLV-FSDYARPAVRLA-AL--------MGLPVIYVFTHDSIGVGEDGPTH-QPVEQLASLRAIPNLSVI 491 (663)
T ss_pred HhcCceeecceehh-hHhhhhHHHHHH-Hh--------cCCCeEEEEecCceecCCCCCCC-CcHHHHHHhhccCCceeE
Confidence 996 6999999854 699999999984 55 4788888865 4665 5599999 8776 999999999999
Q ss_pred eeCCHHHHHHHHHHhHhC-CCcEEEEeCccccCcccCccccccCCCccccCCceEEeee----CCcEEEEEechhHHHHH
Q 020510 180 SPYSSEDARGLLKAAIRD-PDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIERE----GKDVTITAFSKIVGLSL 254 (325)
Q Consensus 180 ~P~d~~e~~~~l~~a~~~-~~Pv~ir~~~~l~~~~~p~~~~~~~~~~~~~~gk~~vl~~----G~dv~Iia~G~~~~~a~ 254 (325)
.|+|..|+..++++|++. ++|+++..+|. +.| .++.++......+++++++ +.|++||++|+.++.|+
T Consensus 492 RPaD~~Et~~aw~~Al~~~~gPt~LiltRQ----nlp---~l~~t~~~~~~kGaYvl~~~~~~~pd~iliAtGSEV~lAv 564 (663)
T COG0021 492 RPADANETAAAWKYALERKDGPTALILTRQ----NLP---VLERTDLEGVAKGAYVLKDSGGEDPDVILIATGSEVELAV 564 (663)
T ss_pred ecCChHHHHHHHHHHHhcCCCCeEEEEecC----CCC---ccCCCccccccCccEEEeecCCCCCCEEEEecccHHHHHH
Confidence 999999999999999995 78999987765 443 2333333333456788877 47999999999999999
Q ss_pred HHHHHHHhcCCcEEEEEeeeccCCCHHH--HHHHHhCCC--eEEEEecCCCCCCHHHHH
Q 020510 255 KAAEILAKEGISAEVINLRSIRPLDRST--INASVRKTN--RLVTVEEGFPQHGVGAEI 309 (325)
Q Consensus 255 ~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~--l~~~~~~~~--~vvvvEe~~~~GGlg~~v 309 (325)
+|++.|+++|++++||++++...|+.+. -++++-... +-|.+|-... .|+...+
T Consensus 565 ~Aa~~L~~~~~~vrVVS~P~~~~fe~Q~~~Y~~~vL~~~v~~rvaiEa~~~-~~W~ky~ 622 (663)
T COG0021 565 EAAKELEAEGIKVRVVSMPSFELFEKQDEEYRESVLPGAVTARVAIEAGSA-LGWYKYV 622 (663)
T ss_pred HHHHHHHhcCCceEEEeccchHHHHcCCHHHHHhhccCCccceEEEEeccc-cchhhhc
Confidence 9999999889999999999999998763 333333332 2477887764 4454443
No 34
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=99.97 E-value=6.3e-30 Score=220.98 Aligned_cols=155 Identities=36% Similarity=0.535 Sum_probs=129.3
Q ss_pred cHHHHHHHHHHHHHhcCC-cEEEEecCCCCccCccccchhHHHHhCCC-------ceeechhhHHHHHHHHHHHhccCCe
Q 020510 38 MVREALNSALDEEMSADP-KVFLMGEEVGEYQGAYKISKGLLEKYGPE-------RVLDTPITEAGFTGIGVGAAYYGLK 109 (325)
Q Consensus 38 s~~~a~~~~L~~l~~~d~-~iv~l~~D~~~~~g~~~~~~~~~~~~gp~-------R~i~~GIaE~~~vg~A~GlA~~G~~ 109 (325)
+++++++++|.+++++|+ +++++++|++.++++ . ..+.| |+ ||+|+||+|++|+++|+|+|+.|++
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~v~~~~~D~~~~~~~----~-~~~~~-~~~~~~~~~R~~~~gIaE~~~vg~a~GlA~~G~~ 74 (168)
T smart00861 1 ATRKAFGEALAELAERDPERVVVSGADVGGSTGL----D-RGGVF-PDTKGLGPGRVIDTGIAEQAMVGFAAGLALAGLR 74 (168)
T ss_pred CHHHHHHHHHHHHHhhCCCcEEEEehhhCcCcCC----C-cCCcc-CCCCCCCCccEEEcCcCHHHHHHHHHHHHHcCCC
Confidence 478999999999999955 999999999765432 1 13455 44 5999999999999999999999999
Q ss_pred eEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCC-CCCCCCc-chHHHHHHhcCCCcEEEeeCCHHHH
Q 020510 110 PVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA-AGVGAQH-SHCYAAWYASVPGLKVLSPYSSEDA 187 (325)
Q Consensus 110 p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~-~g~G~tH-s~~~~a~~~~iP~~~V~~P~d~~e~ 187 (325)
||++++++| +.|++||+++++++ .++|+++....|.. +++|+|| +++++++++++||++|++|+|+.|+
T Consensus 75 pi~~~~~~f-~~~a~~~~~~~~~~--------~~~~~v~~~~~g~~~g~~G~tH~~~~~~~~~~~iP~~~v~~P~~~~e~ 145 (168)
T smart00861 75 PVVAIFFTF-FDRAKDQIRSDGAM--------GRVPVVVRHDSGGGVGEDGPTHHSQEDEALLRAIPGLKVVAPSDPAEA 145 (168)
T ss_pred cEEEeeHHH-HHHHHHHHHHhCcc--------cCCCEEEEecCccccCCCCccccchhHHHHHhcCCCcEEEecCCHHHH
Confidence 999999665 55999999998874 26888888755444 4579877 4577799999999999999999999
Q ss_pred HHHHHHhHhC-CCcEEEEeCc
Q 020510 188 RGLLKAAIRD-PDPVVFLENE 207 (325)
Q Consensus 188 ~~~l~~a~~~-~~Pv~ir~~~ 207 (325)
+.+++++++. ++|+|||.++
T Consensus 146 ~~~l~~a~~~~~~p~~i~~~~ 166 (168)
T smart00861 146 KGLLRAAIRRDDGPPVIRLER 166 (168)
T ss_pred HHHHHHHHhCCCCCEEEEecC
Confidence 9999999976 5799998654
No 35
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=99.89 E-value=1.8e-20 Score=179.87 Aligned_cols=260 Identities=16% Similarity=0.133 Sum_probs=178.3
Q ss_pred ccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEeccc
Q 020510 37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMT 116 (325)
Q Consensus 37 ~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~~ 116 (325)
++-.+|++.+... .+.+++.--+ ...++...-...++.+++ ...|++ ..+|..++++|.|+|.+|.|.++.|.
T Consensus 7 ~~GNeAiA~ga~~---ag~~~~a~YP-iTPsTeI~e~la~~~~~~-~~~~vq-~E~E~aA~~~a~GAs~aG~Ra~taTS- 79 (352)
T PRK07119 7 MKGNEAIAEAAIR---AGCRCYFGYP-ITPQSEIPEYMSRRLPEV-GGVFVQ-AESEVAAINMVYGAAATGKRVMTSSS- 79 (352)
T ss_pred ehHHHHHHHHHHH---hCCCEEEEeC-CCCchHHHHHHHHHHHHh-CCEEEe-eCcHHHHHHHHHHHHhhCCCEEeecC-
Confidence 3455666665543 4677776555 233443322223344456 367888 89999999999999999999999997
Q ss_pred ccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCCc-chHHHHHH-h--c--CCCcEEEeeCCHHHHHHH
Q 020510 117 FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQH-SHCYAAWY-A--S--VPGLKVLSPYSSEDARGL 190 (325)
Q Consensus 117 ~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tH-s~~~~a~~-~--~--iP~~~V~~P~d~~e~~~~ 190 (325)
+.++..+++.|-. ++. ..+|++++.....+.+.|.++ .|.+.-+. + . .-++.|++|+|++|++++
T Consensus 80 g~Gl~lm~E~l~~-a~~--------~e~P~v~v~v~R~~p~~g~t~~eq~D~~~~~~~~ghgd~~~~vl~p~~~qEa~d~ 150 (352)
T PRK07119 80 SPGISLKQEGISY-LAG--------AELPCVIVNIMRGGPGLGNIQPSQGDYFQAVKGGGHGDYRLIVLAPSSVQEMVDL 150 (352)
T ss_pred cchHHHHHHHHHH-HHH--------ccCCEEEEEeccCCCCCCCCcchhHHHHHHHhcCCCCCcceEEEeCCCHHHHHHH
Confidence 5567788898855 332 579988876532222233343 24443222 2 1 335889999999999999
Q ss_pred HHHhHh----CCCcEEEEeCccccCc--c--cCccccc--cCCCccc-c-----------------------------C-
Q 020510 191 LKAAIR----DPDPVVFLENELLYGE--S--FPVSAEV--LDSSFCL-P-----------------------------I- 229 (325)
Q Consensus 191 l~~a~~----~~~Pv~ir~~~~l~~~--~--~p~~~~~--~~~~~~~-~-----------------------------~- 229 (325)
..+|++ .+-||+++.+..+-.. + .|....+ +.+++.+ . +
T Consensus 151 ~~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 230 (352)
T PRK07119 151 TMLAFDLADKYRNPVMVLGDGVLGQMMEPVEFPPRKKRPLPPKDWAVTGTKGRRKNIITSLFLDPEELEKHNLRLQEKYA 230 (352)
T ss_pred HHHHHHHHHHhCCCEEEEcchhhhCceeeecCCchhhcccCCCCCccCCCCCCceeccCCcccCHHHHHHHHHHHHHHHH
Confidence 999998 4679999976432100 0 0000000 0000000 0 0
Q ss_pred ------CceEEe-eeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCCeEEEEecCCCC
Q 020510 230 ------GKAKIE-REGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQ 302 (325)
Q Consensus 230 ------gk~~vl-~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~ 302 (325)
...+.. .++.|++||++|+++..+++|++.|+++|++++|+++++++|||.+.|.++++++++|+|+|++ .
T Consensus 231 ~~~~~~~~~e~~~~~dad~~iva~Gs~~~~a~eA~~~L~~~Gi~v~vi~~~~l~Pfp~~~i~~~l~~~k~VivvE~n--~ 308 (352)
T PRK07119 231 KIEENEVRYEEYNTEDAELVLVAYGTSARIAKSAVDMAREEGIKVGLFRPITLWPFPEKALEELADKGKGFLSVEMS--M 308 (352)
T ss_pred HHHhhCCcceeecCCCCCEEEEEcCccHHHHHHHHHHHHHcCCeEEEEeeceecCCCHHHHHHHHhCCCEEEEEeCC--c
Confidence 000111 1358999999999999999999999999999999999999999999999999999999999998 4
Q ss_pred CCHHHHHHHHHc
Q 020510 303 HGVGAEIWCAFF 314 (325)
Q Consensus 303 GGlg~~v~~~l~ 314 (325)
|.|..+|...+.
T Consensus 309 g~l~~ei~~~~~ 320 (352)
T PRK07119 309 GQMVEDVRLAVN 320 (352)
T ss_pred cHHHHHHHHHhC
Confidence 789999997775
No 36
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=99.86 E-value=2.1e-19 Score=173.77 Aligned_cols=260 Identities=18% Similarity=0.170 Sum_probs=177.2
Q ss_pred ccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEeccc
Q 020510 37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMT 116 (325)
Q Consensus 37 ~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~~ 116 (325)
++-.+|++.+... ...+++..-+ ...++...-...++.+++ ...|+++- +|..++++|.|+|.+|.|.++.|+.
T Consensus 7 ~~GNeAiA~ga~~---ag~~~~a~YP-ITPsTei~e~la~~~~~~-~~~~vq~E-~E~aA~~~a~GAs~aG~Ra~TaTSg 80 (376)
T PRK08659 7 LQGNEACAEGAIA---AGCRFFAGYP-ITPSTEIAEVMARELPKV-GGVFIQME-DEIASMAAVIGASWAGAKAMTATSG 80 (376)
T ss_pred eehHHHHHHHHHH---hCCCEEEEcC-CCChHHHHHHHHHhhhhh-CCEEEEeC-chHHHHHHHHhHHhhCCCeEeecCC
Confidence 4456666666543 4666666554 223333221112233334 25677764 9999999999999999999999984
Q ss_pred ccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC--CCCCCCCCCcchHHH--HHHh---cCCCcEEEeeCCHHHHHH
Q 020510 117 FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN--GAAAGVGAQHSHCYA--AWYA---SVPGLKVLSPYSSEDARG 189 (325)
Q Consensus 117 ~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~--G~~~g~G~tHs~~~~--a~~~---~iP~~~V~~P~d~~e~~~ 189 (325)
..+....+++-...+ ..+|+|++..+ |++.|.-..++|.+. ..+. .. ++.|++|+|++|+++
T Consensus 81 -~Gl~lm~E~~~~a~~---------~e~P~Viv~~~R~gp~tg~p~~~~q~D~~~~~~~~hgd~-~~ivl~p~~~QEa~d 149 (376)
T PRK08659 81 -PGFSLMQENIGYAAM---------TETPCVIVNVQRGGPSTGQPTKPAQGDMMQARWGTHGDH-PIIALSPSSVQECFD 149 (376)
T ss_pred -CcHHHHHHHHHHHHH---------cCCCEEEEEeecCCCCCCCCCCcCcHHHHHHhcccCCCc-CcEEEeCCCHHHHHH
Confidence 456778888865444 57998888653 444444333446554 3322 23 457999999999999
Q ss_pred HHHHhHh----CCCcEEEEeCccccCc--c--cCccccc-------cC------CCcc-----c----------------
Q 020510 190 LLKAAIR----DPDPVVFLENELLYGE--S--FPVSAEV-------LD------SSFC-----L---------------- 227 (325)
Q Consensus 190 ~l~~a~~----~~~Pv~ir~~~~l~~~--~--~p~~~~~-------~~------~~~~-----~---------------- 227 (325)
+...|++ .+.||+++.+..+-.. . .|....+ +. .+|. +
T Consensus 150 ~~~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (376)
T PRK08659 150 LTIRAFNLAEKYRTPVIVLADEVVGHMREKVVLPEPDEIEIIERKLPKVPPEAYKPFDDPEGGVPPMPAFGDGYRFHVTG 229 (376)
T ss_pred HHHHHHHHHHHHCCCEEEEechHhhCCcccccCCChhhccccccccCCCCccccCCCCCCCCCCCCCccCCCCCeEEeCC
Confidence 9999987 4679999865321000 0 0000000 00 0000 0
Q ss_pred ----c---------------------C-------CceEEee-eCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeee
Q 020510 228 ----P---------------------I-------GKAKIER-EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRS 274 (325)
Q Consensus 228 ----~---------------------~-------gk~~vl~-~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~ 274 (325)
+ + +..+... ++.|++||++|+++..+++|++.|+++|++++++++++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~ad~~iv~~Gs~~~~a~eAv~~Lr~~G~~v~~l~~~~ 309 (376)
T PRK08659 230 LTHDERGFPTTDPETHEKLVRRLVRKIEKNRDDIVLYEEYMLEDAEVVVVAYGSVARSARRAVKEAREEGIKVGLFRLIT 309 (376)
T ss_pred ccccCCCCcCcCHHHHHHHHHHHHHHHHHHHhhcCCceeecCCCCCEEEEEeCccHHHHHHHHHHHHhcCCceEEEEeCe
Confidence 0 0 0011111 46899999999999999999999999999999999999
Q ss_pred ccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcC
Q 020510 275 IRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFP 315 (325)
Q Consensus 275 l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~ 315 (325)
++|||.+.|.+++++.++|+|+|+| .|.+..++...+..
T Consensus 310 l~Pfp~~~i~~~~~~~k~VivvEe~--~g~l~~el~~~~~~ 348 (376)
T PRK08659 310 VWPFPEEAIRELAKKVKAIVVPEMN--LGQMSLEVERVVNG 348 (376)
T ss_pred ecCCCHHHHHHHHhcCCEEEEEeCC--HHHHHHHHHHHhCC
Confidence 9999999999999999999999999 48888888888753
No 37
>PRK05261 putative phosphoketolase; Provisional
Probab=99.84 E-value=1e-19 Score=187.24 Aligned_cols=293 Identities=15% Similarity=0.112 Sum_probs=195.9
Q ss_pred hhhhHHhhhhcCCCCcccccccc--ccccccC---c------ccccccHHHHHHHHHHHHHhcCCc-EEEEecCCCCccC
Q 020510 2 WGIIRQKVAAGGGSPVARIRPVV--SNLRNYS---S------AVKQMMVREALNSALDEEMSADPK-VFLMGEEVGEYQG 69 (325)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~------~~~~~s~~~a~~~~L~~l~~~d~~-iv~l~~D~~~~~g 69 (325)
|++++++-.|.|..|.+...... ..++.|. . .....++|. +++.|.++++.||+ +++.++|+..|..
T Consensus 345 ~~l~p~g~~r~~~~P~ang~~~~~~l~lp~~~~~~~~~~~~g~~~~~atr~-~g~~l~~v~~~np~~frvf~pDe~~SNr 423 (785)
T PRK05261 345 AALAPKGDRRMGANPHANGGLLLRDLRLPDFRDYAVPVGKPGAVMAEATRV-LGKYLRDVIKLNPDNFRIFGPDETASNR 423 (785)
T ss_pred HHhccCchhhhcCCchhcCCcCccccCCCchHhhcccccCCCccccccHHH-HHHHHHHHHHhCCCceEEEcCCcchhhc
Confidence 67788888999999988765322 2223332 1 224667888 99999999999999 8889999987655
Q ss_pred ccccchh-------------HHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEecccccH--HHHHHHHH----HHH
Q 020510 70 AYKISKG-------------LLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNF--SMQAIDHI----INS 130 (325)
Q Consensus 70 ~~~~~~~-------------~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~~~~f--~~ra~dqi----~~~ 130 (325)
...+.+. ..... .+|+|+ +++|++|.|++.|+++.|.++++++|.+|. +..++.|+ |..
T Consensus 424 l~~~f~~t~r~~~~~~~~~d~~~~~-~Grvie-~LsEh~~~g~~~Gy~LtG~~~~~~sYeaF~~ivd~m~~q~~kw~r~~ 501 (785)
T PRK05261 424 LQAVFEVTDRQWMAEILPYDEHLAP-DGRVME-VLSEHLCEGWLEGYLLTGRHGFFSSYEAFIHIVDSMFNQHAKWLKVA 501 (785)
T ss_pred cHhHHhhhccccccccCCcccccCC-CCCeee-eecHHHHHHHHHHHHhcCCCcceecHHHHHHHHHHHHHHHHHHHHHH
Confidence 4222110 01123 379999 999999999999999999999999997654 26677777 543
Q ss_pred HhhccccCCCCccCCEEEEeCCCCC-CCCCCCcchH---HH--HHHhcCCCcEEEeeCCHHHHHHHHHHhHhC-CCcEEE
Q 020510 131 AAKSNYMSSGQISVPIVFRGPNGAA-AGVGAQHSHC---YA--AWYASVPGLKVLSPYSSEDARGLLKAAIRD-PDPVVF 203 (325)
Q Consensus 131 ~a~~~~~~~~~~~~pvv~~~~~G~~-~g~G~tHs~~---~~--a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-~~Pv~i 203 (325)
....|+.. -..+..++ .++... +.+|.|| |+ ++ +-++. |++.|+.|+|.+|+..+++.|++. +.|.+|
T Consensus 502 -~~~~wr~~-~~sLn~l~-Ts~~~~qghNG~TH-Q~Pg~ie~l~~~r~-~~~rV~rPaDaNe~laa~~~al~s~~~p~~I 576 (785)
T PRK05261 502 -REIPWRKP-IPSLNYLL-TSHVWRQDHNGFSH-QDPGFIDHVANKKP-DVIRVYLPPDANTLLAVADHCLRSRNYINVI 576 (785)
T ss_pred -hhcccCCC-CcceeEEe-ecceeecCCCCCCC-CCchHHHHHHhcCC-CcceEEeCCCHHHHHHHHHHHHHhCCCCEEE
Confidence 22234321 11222333 233433 4599999 65 44 55566 999999999999999999999986 579988
Q ss_pred EeCccccCcccCccccccCCC---ccccCCceEEee--e-----CCcEEEEEechhHHH-HHHHHHHHHhc--CCcEEEE
Q 020510 204 LENELLYGESFPVSAEVLDSS---FCLPIGKAKIER--E-----GKDVTITAFSKIVGL-SLKAAEILAKE--GISAEVI 270 (325)
Q Consensus 204 r~~~~l~~~~~p~~~~~~~~~---~~~~~gk~~vl~--~-----G~dv~Iia~G~~~~~-a~~Aa~~L~~~--Gi~~~Vi 270 (325)
..+|. +.| ...+.+ ..+..| +.++. + +.|++|+++|+.+.. |++|++.|+++ |++++||
T Consensus 577 vlsRQ----~lp---~~~~~~~a~~~~~kG-ayi~~~a~~~~~~~pDvvL~atGsev~leAlaAa~~L~~~~pgikvRVV 648 (785)
T PRK05261 577 VAGKQ----PRP---QWLSMDEARKHCTKG-LGIWDWASNDDGEEPDVVLACAGDVPTLETLAAADLLREHFPDLKIRVV 648 (785)
T ss_pred EEeCC----CCc---ccCChHHHHHhccCc-eEEEEeccCCCCCCCCEEEEEeCcHhhHHHHHHHHHHHhhCCCCCEEEE
Confidence 87664 222 111111 123344 44444 2 359999999999998 99999999999 9999999
Q ss_pred Eeeecc----------CCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcC
Q 020510 271 NLRSIR----------PLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFP 315 (325)
Q Consensus 271 ~~~~l~----------P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~ 315 (325)
++..+- -++.+.+..+.-..+.||+. .-|.-+.|-..+..
T Consensus 649 Sv~dLf~lQ~~~~~~~~lsd~~f~~lFt~d~pvif~-----~hgyp~~i~~l~~~ 698 (785)
T PRK05261 649 NVVDLMKLQPPSEHPHGLSDREFDALFTTDKPVIFA-----FHGYPWLIHRLTYR 698 (785)
T ss_pred EechhhhhCCcccCCCCCCHHHHHHhCCCCCcEEEE-----eCCCHHHHHHHhcc
Confidence 995321 12344555555444444433 23444555555543
No 38
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=99.84 E-value=1.2e-18 Score=168.16 Aligned_cols=257 Identities=17% Similarity=0.135 Sum_probs=178.3
Q ss_pred ccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHH---HhCCCceeechhhHHHHHHHHHHHhccCCeeEEe
Q 020510 37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLE---KYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVE 113 (325)
Q Consensus 37 ~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~---~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~ 113 (325)
++-.+|++.+... .+.+++.--+ ...++.. .+.+.+ ++ ...|+.+ .+|.+++++|+|+|.+|.|.++.
T Consensus 6 ~~GNeAiA~ga~~---ag~~~~a~YP-ITPsTeI---~e~la~~~~~~-g~~~vq~-E~E~aA~~~a~GAs~aG~Ra~ta 76 (375)
T PRK09627 6 STGNELVAKAAIE---CGCRFFGGYP-ITPSSEI---AHEMSVLLPKC-GGTFIQM-EDEISGISVALGASMSGVKSMTA 76 (375)
T ss_pred echHHHHHHHHHH---hCCCEEEEeC-CCChhHH---HHHHHHHHHHc-CCEEEEc-CCHHHHHHHHHHHHhhCCCEEee
Confidence 3446666665543 4677777555 2333333 233433 44 2456664 89999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC--CCCCCCCCCcchHHHHHHh-----cCCCcEEEeeCCHHH
Q 020510 114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN--GAAAGVGAQHSHCYAAWYA-----SVPGLKVLSPYSSED 186 (325)
Q Consensus 114 ~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~--G~~~g~G~tHs~~~~a~~~-----~iP~~~V~~P~d~~e 186 (325)
|+.+ .+....|++-...+ ..+|++++... |++.|.-....|.|....+ ..|.+ |++|+|++|
T Consensus 77 TSg~-G~~lm~E~~~~a~~---------~e~P~V~~~~~R~GpstG~p~~~~q~D~~~~~~~~hgd~~~i-vl~p~~~qE 145 (375)
T PRK09627 77 SSGP-GISLKAEQIGLGFI---------AEIPLVIVNVMRGGPSTGLPTRVAQGDVNQAKNPTHGDFKSI-ALAPGSLEE 145 (375)
T ss_pred cCCc-hHHHHhhHHHHHHh---------ccCCEEEEEeccCCCcCCCCCccchHHHHHHhcCCCCCcCcE-EEeCCCHHH
Confidence 9855 55667788865433 68999987654 6655543333455543223 45665 999999999
Q ss_pred HHHHHHHhHh----CCCcEEEEeCccccCc--cc--Cccccc---------cC---C---Cccc----c-----------
Q 020510 187 ARGLLKAAIR----DPDPVVFLENELLYGE--SF--PVSAEV---------LD---S---SFCL----P----------- 228 (325)
Q Consensus 187 ~~~~l~~a~~----~~~Pv~ir~~~~l~~~--~~--p~~~~~---------~~---~---~~~~----~----------- 228 (325)
++++...|++ .+.||+++.+..+-.. .+ |....+ +. . .|.+ +
T Consensus 146 a~d~t~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~ 225 (375)
T PRK09627 146 AYTETVRAFNLAERFMTPVFLLLDETVGHMYGKAVIPDLEEVQKMIINRKEFDGDKKDYKPYGVAQDEPAVLNPFFKGYR 225 (375)
T ss_pred HHHHHHHHHHHHHHHcCceEEecchHHhCCeeeccCCChHhccccccccccccCCcccccCCccCCCCCcccCCCCCCce
Confidence 9999999987 4789999865422100 00 000000 00 0 0000 0
Q ss_pred --------------------------------------CCceEEee-eCCcEEEEEechhHHHHHHHHHHHHhcCCcEEE
Q 020510 229 --------------------------------------IGKAKIER-EGKDVTITAFSKIVGLSLKAAEILAKEGISAEV 269 (325)
Q Consensus 229 --------------------------------------~gk~~vl~-~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~V 269 (325)
+...+... ++.|++||++|+....+++|++.|+++|+++++
T Consensus 226 ~~~~~~~~~~~g~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~y~~~dAd~~IV~~GSt~~~~keAv~~lr~~G~kvg~ 305 (375)
T PRK09627 226 YHVTGLHHGPIGFPTEDAKICGKLIDRLFNKIESHQDEIEEYEEYMLDDAEILIIAYGSVSLSAKEAIKRLREEGIKVGL 305 (375)
T ss_pred EEecCccccccCCcCCCHHHHHHHHHHHHHHHHHHhhhcCCceeeCCCCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEE
Confidence 00011111 246899999999999999999999999999999
Q ss_pred EEeeeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcC
Q 020510 270 INLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFP 315 (325)
Q Consensus 270 i~~~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~ 315 (325)
+.+++++|||.+.|++.+++.++|+|+|++. |.|+.+|.+.+..
T Consensus 306 l~~~~~~PfP~~~i~~~l~~~k~viVvE~n~--Gql~~~v~~~~~~ 349 (375)
T PRK09627 306 FRPITLWPSPAKKLKEIGDKFEKILVIELNM--GQYLEEIERVMQR 349 (375)
T ss_pred EEeCeEECCCHHHHHHHHhcCCEEEEEcCCh--HHHHHHHHHHhCC
Confidence 9999999999999999999999999999997 9999999988853
No 39
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.83 E-value=7.9e-19 Score=179.50 Aligned_cols=257 Identities=16% Similarity=0.168 Sum_probs=173.4
Q ss_pred ccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCC--CceeechhhHHHHHHHHHHHhccCCeeEEec
Q 020510 37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGP--ERVLDTPITEAGFTGIGVGAAYYGLKPVVEF 114 (325)
Q Consensus 37 ~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp--~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~ 114 (325)
++-.+|++.+... .+.+++.--+ ...++. +.+.+.+.. + +-++....+|..++++|+|+|.+|.|.+++|
T Consensus 5 ~~GneA~A~g~~~---ag~~~~~~YP-iTP~t~---i~e~l~~~~-~~~~~~~~~~~~E~~a~~~~~GAs~aG~ra~t~t 76 (595)
T TIGR03336 5 LLGNEAIARGALE---AGVGVAAAYP-GTPSSE---ITDTLAKVA-KRAGVYFEWSVNEKVAVEVAAGAAWSGLRAFCTM 76 (595)
T ss_pred ecHHHHHHHHHHH---cCCEEEEecC-CCCHHH---HHHHHHHhh-hhccEEEEECcCHHHHHHHHHHHHhcCcceEEEc
Confidence 4556777777764 4566665444 122222 224444433 3 3456677899999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCCc-chHHHHHHhcCCCcEEEeeCCHHHHHHHHHH
Q 020510 115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQH-SHCYAAWYASVPGLKVLSPYSSEDARGLLKA 193 (325)
Q Consensus 115 ~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tH-s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~ 193 (325)
. +..+..+.|+|.+ ++++ ..+.|+|++..++++ .++++ .|.+.-+.+ ..++.|++|+|++|++++...
T Consensus 77 s-~~Gl~~~~e~l~~-~~~~------g~~~~iV~~~~~~~g--p~~~~~~q~d~~~~~-~~~~~vl~p~~~qE~~d~~~~ 145 (595)
T TIGR03336 77 K-HVGLNVAADPLMT-LAYT------GVKGGLVVVVADDPS--MHSSQNEQDTRHYAK-FAKIPCLEPSTPQEAKDMVKY 145 (595)
T ss_pred c-CCchhhhHHHhhh-hhhh------cCcCceEEEEccCCC--CccchhhHhHHHHHH-hcCCeEECCCCHHHHHHHHHH
Confidence 8 6678899999866 5543 247888888765432 23443 244332222 236669999999999999999
Q ss_pred hHh----CCCcEEEEeCccccCc--c--c---Cccccc--cCCCc---cc-c--------------------CCc--eE-
Q 020510 194 AIR----DPDPVVFLENELLYGE--S--F---PVSAEV--LDSSF---CL-P--------------------IGK--AK- 233 (325)
Q Consensus 194 a~~----~~~Pv~ir~~~~l~~~--~--~---p~~~~~--~~~~~---~~-~--------------------~gk--~~- 233 (325)
|++ .+-||+++.+..+-.. . . +..+.. +..++ .. + ... .+
T Consensus 146 Af~lae~~~~PV~v~~d~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (595)
T TIGR03336 146 AFELSEKFGLPVILRPTTRISHMRGDVELGEIPKEEVVKGFEKDPERYVMVPAIARVRHKKLLSKQHKLREELNESPLNR 225 (595)
T ss_pred HHHHHHHHCCCEEEEEeeeeccceeeEecCCCcccccccCCCCChhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCce
Confidence 998 4789999866432110 0 0 000000 00000 00 0 000 11
Q ss_pred EeeeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHH
Q 020510 234 IEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAF 313 (325)
Q Consensus 234 vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l 313 (325)
+..++.|++||++|++++.+++|++.| |++++|++++++||||++.|.++++++++|+|+|||. +++++.+...+
T Consensus 226 ~~~~~~di~iv~~G~~~~~a~ea~~~~---Gi~~~v~~~~~i~Pld~~~i~~~~~~~~~vivvEe~~--~~~~~~~~~~~ 300 (595)
T TIGR03336 226 LEINGAKIGVIASGIAYNYVKEALERL---GVDVSVLKIGFTYPVPEGLVEEFLSGVEEVLVVEELE--PVVEEQVKALA 300 (595)
T ss_pred eccCCCCEEEEEcCHHHHHHHHHHHHc---CCCeEEEEeCCCCCCCHHHHHHHHhcCCeEEEEeCCc--cHHHHHHHHHH
Confidence 223468999999999999999987765 9999999999999999999999999999999999998 56666666665
Q ss_pred cCCC
Q 020510 314 FPPA 317 (325)
Q Consensus 314 ~~~~ 317 (325)
.+++
T Consensus 301 ~~~~ 304 (595)
T TIGR03336 301 GTAG 304 (595)
T ss_pred HhcC
Confidence 5443
No 40
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=99.83 E-value=2.7e-18 Score=167.76 Aligned_cols=256 Identities=18% Similarity=0.200 Sum_probs=177.6
Q ss_pred ccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCC-----ceeechhhHHHHHHHHHHHhccCCeeE
Q 020510 37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPE-----RVLDTPITEAGFTGIGVGAAYYGLKPV 111 (325)
Q Consensus 37 ~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~-----R~i~~GIaE~~~vg~A~GlA~~G~~p~ 111 (325)
++-.+|++.+... .+.+++..-+ ...++.. .+.+.+.. ++ .|+. ..+|.++++++.|+|.+|.|.+
T Consensus 13 ~~GNeAiA~ga~~---Ag~~~~a~YP-ITPsTeI---~e~la~~~-~~g~~~~~~vq-~E~E~~A~~~~~GAs~aGaRa~ 83 (407)
T PRK09622 13 WDGNTAASNALRQ---AQIDVVAAYP-ITPSTPI---VQNYGSFK-ANGYVDGEFVM-VESEHAAMSACVGAAAAGGRVA 83 (407)
T ss_pred cchHHHHHHHHHH---hCCCEEEEEC-CCCccHH---HHHHHHHh-hCCCcCcEEEe-eccHHHHHHHHHHHHhhCcCEE
Confidence 4456677766543 4677777655 2333332 24455443 42 4677 4799999999999999999999
Q ss_pred EecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC-CCCCCCCCCc-chHHHHHHhcCCCcEEEeeCCHHHHHH
Q 020510 112 VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAGVGAQH-SHCYAAWYASVPGLKVLSPYSSEDARG 189 (325)
Q Consensus 112 v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~~g~G~tH-s~~~~a~~~~iP~~~V~~P~d~~e~~~ 189 (325)
+.|. +..+..+.|.|... +. ..+|+|+.... |..++ -+++ .|.|. +...-.++.+++|+|++|+++
T Consensus 84 TaTS-~~Gl~lm~E~l~~a-a~--------~~~P~V~~~~~R~~~~~-~~i~~d~~D~-~~~r~~g~ivl~p~s~QEa~d 151 (407)
T PRK09622 84 TATS-SQGLALMVEVLYQA-SG--------MRLPIVLNLVNRALAAP-LNVNGDHSDM-YLSRDSGWISLCTCNPQEAYD 151 (407)
T ss_pred eecC-cchHHHHhhHHHHH-HH--------hhCCEEEEEeccccCCC-cCCCchHHHH-HHHhcCCeEEEeCCCHHHHHH
Confidence 9998 55778889998663 43 58998887653 32222 2333 23332 223456799999999999999
Q ss_pred HHHHhHhC------CCcEEEEeCccccC---ccc--------------------------Ccc-ccccCCCccc------
Q 020510 190 LLKAAIRD------PDPVVFLENELLYG---ESF--------------------------PVS-AEVLDSSFCL------ 227 (325)
Q Consensus 190 ~l~~a~~~------~~Pv~ir~~~~l~~---~~~--------------------------p~~-~~~~~~~~~~------ 227 (325)
+...|++. ..||+++.+..+.. ..+ |.. +.....+..+
T Consensus 152 ~~~~Af~lAE~~~~~~Pviv~~Dg~~~sh~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 231 (407)
T PRK09622 152 FTLMAFKIAEDQKVRLPVIVNQDGFLCSHTAQNVRPLSDEVAYQFVGEYQTKNSMLDFDKPVTYGAQTEEDWHFEHKAQL 231 (407)
T ss_pred HHHHHHHHHHHhccCCCEEEEechhhhhCceeeecCCCHHHHhhccCcccccccccCCCCCccCCCCCCCCeeEEechhc
Confidence 99999873 57999986643200 000 000 0000000000
Q ss_pred ----------------c----CCc----eEEe-eeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHH
Q 020510 228 ----------------P----IGK----AKIE-REGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRST 282 (325)
Q Consensus 228 ----------------~----~gk----~~vl-~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~ 282 (325)
+ .|. .+.. .++.|++||++|+++..+++|++.|+++|++++|+++++++|||.+.
T Consensus 232 ~~~~~~~~~~i~~~~~~~~k~~g~~y~~~e~~~~edad~~iV~~Gs~~~~a~ea~~~L~~~G~kvgvi~~r~~~Pfp~~~ 311 (407)
T PRK09622 232 HHALMSSSSVIEEVFNDFAKLTGRKYNLVETYQLEDAEVAIVALGTTYESAIVAAKEMRKEGIKAGVATIRVLRPFPYER 311 (407)
T ss_pred chhhhhhHHHHHHHHHHHHHHhCCCCCceeecCCCCCCEEEEEEChhHHHHHHHHHHHHhCCCCeEEEEeeEhhhCCHHH
Confidence 0 110 1111 13578999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCeEEEEecCCCCCCHHHHHHHHH
Q 020510 283 INASVRKTNRLVTVEEGFPQHGVGAEIWCAF 313 (325)
Q Consensus 283 l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l 313 (325)
|.++++++++|+|+|++...||+|+.+.+.+
T Consensus 312 l~~~l~~~k~VvVvE~~~~~Gg~G~l~~ev~ 342 (407)
T PRK09622 312 LGQALKNLKALAILDRSSPAGAMGALFNEVT 342 (407)
T ss_pred HHHHHhcCCEEEEEeCCCCCCCccHHHHHHH
Confidence 9999999999999999999999988555544
No 41
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=99.81 E-value=5.1e-21 Score=157.32 Aligned_cols=90 Identities=42% Similarity=0.633 Sum_probs=86.5
Q ss_pred CceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHH
Q 020510 230 GKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 309 (325)
Q Consensus 230 gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v 309 (325)
||++++++|+|++||++|++++.|++|++.|+++|++++|||+++++|||++.|.++++++++++|+|||+..||+|+.|
T Consensus 1 Gk~~~~~~g~di~iia~G~~~~~al~A~~~L~~~Gi~~~vi~~~~i~P~d~~~l~~~~~~~~~vvvvee~~~~gg~g~~i 80 (124)
T PF02780_consen 1 GKAEVLREGADITIIAYGSMVEEALEAAEELEEEGIKAGVIDLRTIKPFDEEALLESLKKTGRVVVVEEHYKIGGLGSAI 80 (124)
T ss_dssp TEEEEEESSSSEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEEEESSBHHHHHHHSHHHHHHHHSETCESEEEEHSSH
T ss_pred CEEEEEeCCCCEEEEeehHHHHHHHHHHHHHHHcCCceeEEeeEEEecccccchHHHHHHhccccccccccccccHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCcc
Q 020510 310 WCAFFPPAWL 319 (325)
Q Consensus 310 ~~~l~~~~~~ 319 (325)
++.+.++++.
T Consensus 81 ~~~l~~~~~~ 90 (124)
T PF02780_consen 81 AEYLAENGFN 90 (124)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHHhCCc
Confidence 9999987664
No 42
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=99.80 E-value=1.6e-18 Score=178.63 Aligned_cols=260 Identities=18% Similarity=0.255 Sum_probs=184.2
Q ss_pred hHHhhhhcCCCCccccccccc----cccccC-----cccccccHHHHHHHHHHHHHhc---CCcEEEEecCCCCccCccc
Q 020510 5 IRQKVAAGGGSPVARIRPVVS----NLRNYS-----SAVKQMMVREALNSALDEEMSA---DPKVFLMGEEVGEYQGAYK 72 (325)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~-----~~~~~~s~~~a~~~~L~~l~~~---d~~iv~l~~D~~~~~g~~~ 72 (325)
.+...++.||-..+|..+... .+..|. ...+.+|++.||++.|..+++. .++||.+.+|.+++ |+
T Consensus 448 ~~~rr~~Lgg~~p~R~~~~~~l~vP~l~~~~~~~~~~~~~~~STt~afvr~l~~L~r~~~~g~riVpi~pDeart---fg 524 (885)
T TIGR00759 448 LLARRQALGGYLPARRTFAEHLTVPALEFFGALLKGSGEREVSTTMAFVRILNKLLKDKEIGKRIVPIVPDEART---FG 524 (885)
T ss_pred HHHHHHHhCCCCCCcCCCCCCCCCCCchhhHHHhcCCCCCCccHHHHHHHHHHHHhcCcccccceeecCCCcccc---CC
Confidence 455677788876666553111 222221 2237899999999999999986 47799999999864 55
Q ss_pred cchhHHHHhC------------------------CCceeechhhHHHHHH--HHHHHhcc--C--CeeEEecccccH-HH
Q 020510 73 ISKGLLEKYG------------------------PERVLDTPITEAGFTG--IGVGAAYY--G--LKPVVEFMTFNF-SM 121 (325)
Q Consensus 73 ~~~~~~~~~g------------------------p~R~i~~GIaE~~~vg--~A~GlA~~--G--~~p~v~~~~~~f-~~ 121 (325)
+ +++..+.| ..|+++.||+|.++++ +|+|.|.+ | +.||+..| +.| .+
T Consensus 525 m-~g~f~~~gIy~~~gq~y~p~d~~~~~~y~e~~~Gq~le~GI~E~g~~~~~~aagtsys~~g~~miP~yi~Y-smFgfq 602 (885)
T TIGR00759 525 M-EGLFRQIGIYSPHGQTYTPVDADSLLAYKESKDGQILQEGINEAGAMASWIAAATSYATHGEPMIPFYIYY-SMFGFQ 602 (885)
T ss_pred h-HHhhcccCccCCCCccCCccchhhhhhcccCCCCcchhhhhhhHHHHHHHHHHHhHHhhCCCeeeeeeEee-cccccc
Confidence 4 56666543 4799999999999998 45666544 5 78998555 656 99
Q ss_pred HHHHHHHHHHhhccccCCCCccCCEEEEeCCCCC--CCCCCCcchHHH--HHHhcCCCcEEEeeCCHHHHHHHHHHhHhC
Q 020510 122 QAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGAQHSHCYA--AWYASVPGLKVLSPYSSEDARGLLKAAIRD 197 (325)
Q Consensus 122 ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~--~g~G~tHs~~~~--a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~ 197 (325)
|..|.+ ..+|++ .-..+++.++.|.+ .|.|.+| |... .+...+||+..|.|+...|+..+++++++.
T Consensus 603 R~gD~~-waa~d~-------~argfl~g~taGrtTL~gEGlqH-qdg~s~~~~~~~P~~~~ydPafa~Ela~i~~~g~~r 673 (885)
T TIGR00759 603 RIGDLC-WAAADQ-------RARGFLLGATAGRTTLNGEGLQH-EDGHSLLQAATIPNCIAYDPAFAYEVAVIMEDGLRR 673 (885)
T ss_pred chHHHH-HHHhhh-------cCCceEeccCCCcccCCCccccC-ccccchHHHhcCCCceeecCchHHHHHHHHHHHHHH
Confidence 999976 445642 34455555555763 5788899 5554 567889999999999999999999988873
Q ss_pred ----CCcEEEEeCccccCcccCccccccCCC-ccccCCceEEeee------CCcEEEEEechhHHHHHHHHHHHHhc-CC
Q 020510 198 ----PDPVVFLENELLYGESFPVSAEVLDSS-FCLPIGKAKIERE------GKDVTITAFSKIVGLSLKAAEILAKE-GI 265 (325)
Q Consensus 198 ----~~Pv~ir~~~~l~~~~~p~~~~~~~~~-~~~~~gk~~vl~~------G~dv~Iia~G~~~~~a~~Aa~~L~~~-Gi 265 (325)
+..+|++.+. +.++++. +..++.. ..+ +-+.+++++ +.++.|+++|+.+.++++|++.|+++ |+
T Consensus 674 m~~~~~~v~yylt~--~ne~~~q-p~~p~~~~egI-lkG~Y~l~~~~~~~~~~~VqLlgSG~il~evl~Aa~lL~~~~gV 749 (885)
T TIGR00759 674 MYGEQEDVFYYVTV--MNENYVQ-PPMPEGAEEGI-LKGLYRFETSTEEKAKGHVQLLGSGAIMRAVIEAAQLLAADWGV 749 (885)
T ss_pred HhhCCCCEEEEEEe--cCCCCCC-CCCCcchHHhH-HhCceecccCCCCCCCccEEEEeccHHHHHHHHHHHHHHHHHCC
Confidence 5678887653 2222221 1112110 111 122444443 24799999999999999999999987 99
Q ss_pred cEEEEEeeeccCCCHHH
Q 020510 266 SAEVINLRSIRPLDRST 282 (325)
Q Consensus 266 ~~~Vi~~~~l~P~d~~~ 282 (325)
.++|++++|.+-|..+.
T Consensus 750 ~adVwSvTS~~eL~Rd~ 766 (885)
T TIGR00759 750 ASDVWSVTSFTELARDG 766 (885)
T ss_pred CCcEEECCCHHHHHHhH
Confidence 99999999998888774
No 43
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=99.78 E-value=2.3e-16 Score=152.96 Aligned_cols=258 Identities=14% Similarity=0.124 Sum_probs=174.0
Q ss_pred ccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCC----CceeechhhHHHHHHHHHHHhccCCeeEE
Q 020510 37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGP----ERVLDTPITEAGFTGIGVGAAYYGLKPVV 112 (325)
Q Consensus 37 ~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp----~R~i~~GIaE~~~vg~A~GlA~~G~~p~v 112 (325)
++-.+|++.+.. ..+.+++..-+ ...++.. .+.+.+.. + +-.+-...+|.+++++|.|+|.+|.|.++
T Consensus 6 l~GNeAiA~ga~---~ag~~~~a~YP-ITPsTei---~e~la~~~-~~G~~~~~~~~~E~E~aA~~~aiGAs~aGaRa~T 77 (390)
T PRK08366 6 VSGNYAAAYAAL---HARVQVVAAYP-ITPQTSI---IEKIAEFI-ANGEADIQYVPVESEHSAMAACIGASAAGARAFT 77 (390)
T ss_pred eeHHHHHHHHHH---HhCCCEEEEEC-CCChhHH---HHHHHHHh-hCCCCCeEEEEeCCHHHHHHHHHHHHhhCCCeEe
Confidence 345566665543 34677776554 2233332 23444433 3 12233357999999999999999999999
Q ss_pred ecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC--CCCCCCCCCc-chHHHHHHhcCCCcEEEeeCCHHHHHH
Q 020510 113 EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN--GAAAGVGAQH-SHCYAAWYASVPGLKVLSPYSSEDARG 189 (325)
Q Consensus 113 ~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~--G~~~g~G~tH-s~~~~a~~~~iP~~~V~~P~d~~e~~~ 189 (325)
.|. +..+..+.|+|.. ++. ..+|+|+.... |+ + ..++| .|.|.- +..-.++.+++|+|++|+++
T Consensus 78 aTS-g~Gl~lm~E~l~~-aa~--------~~lPiVi~~~~R~~p-~-~~~~~~~q~D~~-~~~d~g~i~~~~~~~QEa~d 144 (390)
T PRK08366 78 ATS-AQGLALMHEMLHW-AAG--------ARLPIVMVDVNRAMA-P-PWSVWDDQTDSL-AQRDTGWMQFYAENNQEVYD 144 (390)
T ss_pred eeC-cccHHHHhhHHHH-HHh--------cCCCEEEEEeccCCC-C-CCCCcchhhHHH-HHhhcCEEEEeCCCHHHHHH
Confidence 998 5577888999865 443 58999887643 33 2 23443 344432 22333789999999999999
Q ss_pred HHHHhHh----CCCcEEEEeCccccC----------c---------ccC---c---c-c---cccC-CCc------c---
Q 020510 190 LLKAAIR----DPDPVVFLENELLYG----------E---------SFP---V---S-A---EVLD-SSF------C--- 226 (325)
Q Consensus 190 ~l~~a~~----~~~Pv~ir~~~~l~~----------~---------~~p---~---~-~---~~~~-~~~------~--- 226 (325)
+...|++ .+.||+++.+..+.. + ..+ . . + ..+. .+. .
T Consensus 145 ~t~~Af~lAE~~~~PViv~~Dg~~~sh~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~p~s~~~~~~~~~~~e~~~~~~~ 224 (390)
T PRK08366 145 GVLMAFKVAETVNLPAMVVESAFILSHTYDVVEMIPQELVDEFLPPRKPLYSLADFDNPISVGALATPADYYEFRYKIAK 224 (390)
T ss_pred HHHHHHHHHHHHCCCEEEEecCcccccccccccCCCHHHHhhhcCccccccccCCCCCCcccccCCCCcceeeeeHhhhH
Confidence 9998887 478999987532100 0 000 0 0 0 0000 000 0
Q ss_pred ---------------c--cCCce-E-Eee----eCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHH
Q 020510 227 ---------------L--PIGKA-K-IER----EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTI 283 (325)
Q Consensus 227 ---------------~--~~gk~-~-vl~----~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l 283 (325)
+ .+|+- . ... ++.|++||++|+....+++|++.|+++|++++++.+++++|||.+.|
T Consensus 225 ~~e~~~~~i~~~~~~~~k~~gr~~~~~~e~y~~edAe~~iV~~Gs~~~~~~eav~~lr~~G~kvg~l~i~~~~PfP~~~i 304 (390)
T PRK08366 225 AMEEAKKVIKEVGKEFGERFGRDYSQMIETYYTDDADFVFMGMGSLMGTVKEAVDLLRKEGYKVGYAKVRWFRPFPKEEL 304 (390)
T ss_pred HHHhHHHHHHHHHHHHHHHhCccccccceecCCCCCCEEEEEeCccHHHHHHHHHHHHhcCCceeeEEEeeecCCCHHHH
Confidence 0 01111 1 111 34789999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCeEEEEecCCCCCC---HHHHHHHHHcC
Q 020510 284 NASVRKTNRLVTVEEGFPQHG---VGAEIWCAFFP 315 (325)
Q Consensus 284 ~~~~~~~~~vvvvEe~~~~GG---lg~~v~~~l~~ 315 (325)
++++++.++|+|+|++...|. +..++...|.+
T Consensus 305 ~~~l~~~k~ViVvE~n~~~Gq~g~l~~ev~~~l~~ 339 (390)
T PRK08366 305 YEIAESVKGIAVLDRNFSFGQEGILFTEAKGALYN 339 (390)
T ss_pred HHHHhcCCEEEEEeCCCCCCcccHHHHHHHHHHhc
Confidence 999999999999999986577 56666666643
No 44
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=99.78 E-value=8.2e-17 Score=163.36 Aligned_cols=262 Identities=18% Similarity=0.202 Sum_probs=176.4
Q ss_pred cccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEecc
Q 020510 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFM 115 (325)
Q Consensus 36 ~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~ 115 (325)
-++-.+|++.+... .+.+++..-+ ...++...-...++.+++ +-.+....+|.+++++|.|+|.+|.|.++.|.
T Consensus 195 ~l~GNeAvA~ga~~---ag~~~~~~YP-iTPsTei~e~la~~~~~~--~~~~~q~E~E~aA~~~a~GAs~aG~Ra~taTS 268 (562)
T TIGR03710 195 LISGNEAIALGAIA---AGLRFYAAYP-ITPASDILEFLAKHLKKF--GVVVVQAEDEIAAINMAIGASYAGARAMTATS 268 (562)
T ss_pred EeehHHHHHHHHHH---hCCceecccC-CCChhHHHHHHHHhhhhh--CcEEEeeccHHHHHHHHHhHHhcCCceeecCC
Confidence 45567777776543 3555555443 222333321112233344 23444569999999999999999999999998
Q ss_pred cccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC--CCCCCCCCCcchHHH--HHHhc--CCCcEEEeeCCHHHHHH
Q 020510 116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN--GAAAGVGAQHSHCYA--AWYAS--VPGLKVLSPYSSEDARG 189 (325)
Q Consensus 116 ~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~--G~~~g~G~tHs~~~~--a~~~~--iP~~~V~~P~d~~e~~~ 189 (325)
+..+..+.|.+-. ++ + ..+|+|++..+ |+..|.-..+.|.|. +.+.. --++.|++|+|++|+++
T Consensus 269 -g~Gl~lm~E~l~~-a~-~-------~~~P~Vi~~~~R~gpstg~~t~~eq~D~~~~~~~~hgd~~~ivl~p~~~qEa~d 338 (562)
T TIGR03710 269 -GPGFALMTEALGL-AG-M-------TETPLVIVDVQRGGPSTGLPTKTEQSDLLFALYGGHGEFPRIVLAPGSPEECFY 338 (562)
T ss_pred -CCChhHhHHHHhH-HH-h-------ccCCEEEEEcccCCCCCCCCCCccHHHHHHHhcCCCCCcCceEEcCCCHHHHHH
Confidence 4566778898833 33 2 68999988754 454454334445553 33322 22478999999999999
Q ss_pred HHHHhHh----CCCcEEEEeCccccCc--c--cCc------------------------c-----c-cccCCC-ccc---
Q 020510 190 LLKAAIR----DPDPVVFLENELLYGE--S--FPV------------------------S-----A-EVLDSS-FCL--- 227 (325)
Q Consensus 190 ~l~~a~~----~~~Pv~ir~~~~l~~~--~--~p~------------------------~-----~-~~~~~~-~~~--- 227 (325)
+...|++ ...||+++.+..+-.. . .|. . + .++... ..+
T Consensus 339 ~~~~Af~lAe~~~~PViv~~D~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~~~~~ 418 (562)
T TIGR03710 339 LAIEAFNLAEKYQTPVIVLSDQYLANSYETVPPPDLDDLPIIDRGKVLEPEEEYKRYELTEDGISPRAIPGTPGGIHRAT 418 (562)
T ss_pred HHHHHHHHHHHhcCCEEEEechHHhCCceeccCCChhhcccccccccccCCCCCCCCCcCCCCCCCCCcCCCCCceEEec
Confidence 9999887 4789999865322100 0 000 0 0 000000 000
Q ss_pred -----c----------------------------CCceEEee-eCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEee
Q 020510 228 -----P----------------------------IGKAKIER-EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLR 273 (325)
Q Consensus 228 -----~----------------------------~gk~~vl~-~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~ 273 (325)
+ ++..+... ++.|++||++|++...+++|++.|+++|++++++.++
T Consensus 419 ~~~~~e~g~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~da~~~iv~~Gs~~~~~~eav~~lr~~G~kvg~l~~~ 498 (562)
T TIGR03710 419 GDEHDETGHISEDPENRVKMMEKRARKLETIAKEIPEPEVYGDEDADVLVIGWGSTYGAIREAVERLRAEGIKVALLHLR 498 (562)
T ss_pred CCccCCCCCcCCCHHHHHHHHHHHHHHHHHHHhhCCCceeecCCCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEeC
Confidence 0 00011111 2468999999999999999999999999999999999
Q ss_pred eccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHc
Q 020510 274 SIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFF 314 (325)
Q Consensus 274 ~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~ 314 (325)
+++|||.+.|.+.+++.++|+|+|++. .|.|..+|...+.
T Consensus 499 ~~~PfP~~~i~~~l~~~k~v~VvE~n~-~Gql~~~v~~~~~ 538 (562)
T TIGR03710 499 LLYPFPKDELAELLEGAKKVIVVEQNA-TGQLAKLLRAETG 538 (562)
T ss_pred eecCCCHHHHHHHHhcCCEEEEEccCh-hhhHHHHHHHHhC
Confidence 999999999999999999999999986 4999999998873
No 45
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=99.76 E-value=4.9e-16 Score=151.00 Aligned_cols=259 Identities=17% Similarity=0.156 Sum_probs=176.8
Q ss_pred ccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCC-----CceeechhhHHHHHHHHHHHhccCCeeE
Q 020510 37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGP-----ERVLDTPITEAGFTGIGVGAAYYGLKPV 111 (325)
Q Consensus 37 ~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp-----~R~i~~GIaE~~~vg~A~GlA~~G~~p~ 111 (325)
++-.+|++.+... .+.+++..-+ ...++.. .+.+.+.. + ..|+. ..+|.+++++|.|+|.+|.|.+
T Consensus 7 ~~GNeAvA~aa~~---Ag~~v~a~YP-ITPsTei---~e~la~~~-~~g~~~~~~v~-~EsE~aA~~~~~GAs~aGaRa~ 77 (394)
T PRK08367 7 MKANEAAAWAAKL---AKPKVIAAFP-ITPSTLV---PEKISEFV-ANGELDAEFIK-VESEHSAISACVGASAAGVRTF 77 (394)
T ss_pred ccHHHHHHHHHHH---hCCCEEEEEC-CCCccHH---HHHHHHHh-hcCCcCeEEEE-eCCHHHHHHHHHHHHhhCCCeE
Confidence 4456677666543 4677776554 2233332 24444432 2 33554 4899999999999999999999
Q ss_pred EecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC-CCCCCCCCCcchHHHHHHhcCCCcEEEeeCCHHHHHHH
Q 020510 112 VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGL 190 (325)
Q Consensus 112 v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~~g~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~ 190 (325)
+.|. +..+..+.|++.. ++. ..+|++++... +...+.+....|.| .+.-.--++.+++|+|.+|+.++
T Consensus 78 TaTS-~~Gl~lm~E~l~~-aag--------~~lP~V~vv~~R~~~~p~~i~~d~~D-~~~~rd~g~~~~~a~~~QEa~D~ 146 (394)
T PRK08367 78 TATA-SQGLALMHEVLFI-AAG--------MRLPIVMAIGNRALSAPINIWNDWQD-TISQRDTGWMQFYAENNQEALDL 146 (394)
T ss_pred eeec-cchHHHHhhHHHH-HHH--------ccCCEEEEECCCCCCCCCCcCcchHH-HHhccccCeEEEeCCCHHHHHHH
Confidence 9998 6678889999865 443 58998888643 22222233223444 22223346888999999999999
Q ss_pred HHHhHhC------CCcEEEEeCccccCc--------------c-cC-cc----------cc----c-cCCCc-----c--
Q 020510 191 LKAAIRD------PDPVVFLENELLYGE--------------S-FP-VS----------AE----V-LDSSF-----C-- 226 (325)
Q Consensus 191 l~~a~~~------~~Pv~ir~~~~l~~~--------------~-~p-~~----------~~----~-~~~~~-----~-- 226 (325)
...|++. ..||+++.+..+... . .| .. +. . ....+ .
T Consensus 147 ~~~Af~lAE~~~~~~Pviv~~Dgf~~sH~~e~v~~~~~~~~~~~~~~~~~~~~~~d~~~p~~~g~~~~p~~~~~~~~~~~ 226 (394)
T PRK08367 147 ILIAFKVAEDERVLLPAMVGFDAFILTHTVEPVEIPDQEVVDEFLGEYEPKHAYLDPARPITQGALAFPAHYMEARYTVW 226 (394)
T ss_pred HHHHHHHHHHhCcCCCEEEEechhhhcCcccccccCCHHHHhhhcCcccccccccCCCCCcccCCCCCCCceEEEEeecH
Confidence 9998873 269999866421000 0 00 00 00 0 00000 0
Q ss_pred ---------c---------cCC-ceEEee----eCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHH
Q 020510 227 ---------L---------PIG-KAKIER----EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTI 283 (325)
Q Consensus 227 ---------~---------~~g-k~~vl~----~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l 283 (325)
+ .+| +...+. ++.|++||++|+....+++|++.|+++|++++++.+++++|||.+.|
T Consensus 227 ~~~~~~~~~i~e~~~e~~~~~grky~~~e~yg~eDAe~viV~~GS~~~~~keav~~LR~~G~kVGllri~~~rPFP~~~i 306 (394)
T PRK08367 227 EAMENAKKVIDEAFAEFEKKFGRKYQKIEEYRTEDAEIIFVTMGSLAGTLKEFVDKLREEGYKVGAAKLTVYRPFPVEEI 306 (394)
T ss_pred HHHHHhHHHHHHHHHHHHHHhCCccceeEEeCCCCCCEEEEEeCccHHHHHHHHHHHHhcCCcceeEEEeEecCCCHHHH
Confidence 0 022 122221 35799999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCeEEEEecCCC---CCCHHHHHHHHHcC
Q 020510 284 NASVRKTNRLVTVEEGFP---QHGVGAEIWCAFFP 315 (325)
Q Consensus 284 ~~~~~~~~~vvvvEe~~~---~GGlg~~v~~~l~~ 315 (325)
.+++++.++|+|+|.+.. .|.|..+|...|..
T Consensus 307 ~~~l~~~k~ViVvE~n~s~g~~g~l~~dV~aal~~ 341 (394)
T PRK08367 307 RALAKKAKVLAFLEKNISFGLGGAVFADASAALVN 341 (394)
T ss_pred HHHHccCCEEEEEeCCCCCCCCCcHHHHHHHHHhc
Confidence 999999999999999864 46688999999853
No 46
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=99.65 E-value=4.7e-15 Score=147.71 Aligned_cols=256 Identities=20% Similarity=0.268 Sum_probs=175.6
Q ss_pred hHHhhhhcCCCCcccccccc-cccccc---------CcccccccHHHHHHHHHHHHHhc---CCcEEEEecCCCCccCcc
Q 020510 5 IRQKVAAGGGSPVARIRPVV-SNLRNY---------SSAVKQMMVREALNSALDEEMSA---DPKVFLMGEEVGEYQGAY 71 (325)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~-~~~~~~---------~~~~~~~s~~~a~~~~L~~l~~~---d~~iv~l~~D~~~~~g~~ 71 (325)
++...++.||--.+| ||+. -.++++ ...++.+|++.||.+.|.+++++ .++||.+.+|.++ +|
T Consensus 451 l~~rr~al~g~~p~r-r~~~t~~l~vP~l~~~~a~~~~~g~~iSTtmAfvr~l~~llkdk~ig~riVpiipDear---Tf 526 (887)
T COG2609 451 LHARRAALGGYLPAR-RPKFTPALPVPSLSDFQALLKGQGEEISTTMAFVRILNELLKDKEIGKRIVPIIPDEAR---TF 526 (887)
T ss_pred HHHHHHhcCCCCchh-cccCCCCccCCcHHHHHHHHhccCccchhHHHHHHHHHHHHhccccCCccccccCchhh---hc
Confidence 455666777754443 3333 112222 22345799999999999999985 3779999999986 45
Q ss_pred ccchhHHHHhC------------------------CCceeechhhHHHHHH--HHHHHhcc--C--CeeEEecccccH-H
Q 020510 72 KISKGLLEKYG------------------------PERVLDTPITEAGFTG--IGVGAAYY--G--LKPVVEFMTFNF-S 120 (325)
Q Consensus 72 ~~~~~~~~~~g------------------------p~R~i~~GIaE~~~vg--~A~GlA~~--G--~~p~v~~~~~~f-~ 120 (325)
++ +++..+.| ..+.++.||+|.++++ +|+|.|.. | +.||+-. |+.| .
T Consensus 527 gm-eg~f~q~GIy~~~GQ~y~p~d~~~~~~ykea~~GQiLqeGInE~ga~~sw~AagtSys~~~~pmiPfyi~-YsmFgf 604 (887)
T COG2609 527 GM-EGLFRQIGIYNPNGQQYTPQDRDQVMYYKEAESGQILQEGINEAGAFASWIAAGTSYSTHGEPMIPFYIY-YSMFGF 604 (887)
T ss_pred cc-hhhhhhcccccCCCccCCccchhhhhhhhhCCCcchHHhhhccccHHHHHHHHhcccccCCccceeeeee-echhhh
Confidence 54 56655544 4789999999999998 45666544 5 7898854 4655 9
Q ss_pred HHHHHHHHHHHhhccccCCCCccCCEEEEeCCC-CC-CCCCCCcchHHH--HHHhcCCCcEEEeeCCHHHHHHHHHHhHh
Q 020510 121 MQAIDHIINSAAKSNYMSSGQISVPIVFRGPNG-AA-AGVGAQHSHCYA--AWYASVPGLKVLSPYSSEDARGLLKAAIR 196 (325)
Q Consensus 121 ~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G-~~-~g~G~tHs~~~~--a~~~~iP~~~V~~P~d~~e~~~~l~~a~~ 196 (325)
+|..|-+ +.+|. ++.-.+++.+.-| .+ .|.|.+| +... -+-..+||+.-|.|+...|+.-+++.+++
T Consensus 605 qRigD~~-waA~d-------q~ARgFLlgaTagrtTLngEGlqH-edghS~l~~~~ip~~~tYdPafayEvAVI~~~g~~ 675 (887)
T COG2609 605 QRIGDLL-WAAGD-------QDARGFLLGATAGRTTLNGEGLQH-EDGHSHLQAMTIPNCISYDPAFAYEVAVIMQDGLR 675 (887)
T ss_pred hhHHHHH-HHHHh-------hhhcceeEeecCCCceeCcccccc-ccccchhhhhcCCCccccCchHHHHHHHHHHHHHH
Confidence 9999965 55665 3455577766544 33 5788888 5444 34467999999999999999999999987
Q ss_pred C-------CCcEEEEeCccccCcccCccccccCC-CccccCCceEEeee-----CCcEEEEEechhHHHHHHHHHHHHhc
Q 020510 197 D-------PDPVVFLENELLYGESFPVSAEVLDS-SFCLPIGKAKIERE-----GKDVTITAFSKIVGLSLKAAEILAKE 263 (325)
Q Consensus 197 ~-------~~Pv~ir~~~~l~~~~~p~~~~~~~~-~~~~~~gk~~vl~~-----G~dv~Iia~G~~~~~a~~Aa~~L~~~ 263 (325)
. +.-.|++.... +++. |..|.+ +..+.- +.++++. +.++.|+++|..+.+|++|++.|+++
T Consensus 676 rmy~~~qe~v~yYlt~~ne----~~~q-Pamp~gae~gI~k-G~Y~l~~~~~~~~~~vqll~SGai~~ea~~AaelL~~d 749 (887)
T COG2609 676 RMYGEGQENVFYYITLSNE----NYPQ-PAMPEGAEEGIIK-GIYKLETPGGQGKAKVQLLGSGAILREALEAAELLAKD 749 (887)
T ss_pred HHhccCcCCcEEEEEeccC----cCCC-CCCCCcchhhhhh-ceeEeecCCCCCCceEEEEecchhHHHHHHHHHHHhhc
Confidence 2 12355553222 2221 112211 111212 2344432 46899999999999999999999984
Q ss_pred -CCcEEEEEeeeccCCCHH
Q 020510 264 -GISAEVINLRSIRPLDRS 281 (325)
Q Consensus 264 -Gi~~~Vi~~~~l~P~d~~ 281 (325)
|+.++|++++|..-+..+
T Consensus 750 ~gv~adl~svtS~~eL~rd 768 (887)
T COG2609 750 YGVEADLWSVTSFDELARD 768 (887)
T ss_pred cccccCeeecccHHHHhcc
Confidence 999999999998777654
No 47
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=99.58 E-value=3.1e-13 Score=134.54 Aligned_cols=217 Identities=18% Similarity=0.231 Sum_probs=154.7
Q ss_pred CceeechhhHHHHHHHHHHHhccCCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCCcc
Q 020510 84 ERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHS 163 (325)
Q Consensus 84 ~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tHs 163 (325)
+-+++.+.+|.-++.+|+|.+..|.|.++++. ...++++.|.+++ ++|. ..+-.++++..+.++ ...|
T Consensus 58 ~vy~e~s~NEkvA~e~a~GA~~~G~ral~~mK-hVGlNvAsDpl~s-~ay~------Gv~GGlviv~aDDpg----~~SS 125 (640)
T COG4231 58 DVYFEWSLNEKVALETAAGASYAGVRALVTMK-HVGLNVASDPLMS-LAYA------GVTGGLVIVVADDPG----MHSS 125 (640)
T ss_pred cEEEEecccHHHHHHHHHHhhhcCceeeEEec-ccccccchhhhhh-hhhc------CccccEEEEEccCCC----cccc
Confidence 78999999999999999999999999999988 7789999999976 5654 244556666544332 1222
Q ss_pred hHH--HHHHhcCCCcEEEeeCCHHHHHHHHHHhHhC----CCcEEEEeCccccC-c--------ccC-cccc--ccC---
Q 020510 164 HCY--AAWYASVPGLKVLSPYSSEDARGLLKAAIRD----PDPVVFLENELLYG-E--------SFP-VSAE--VLD--- 222 (325)
Q Consensus 164 ~~~--~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~----~~Pv~ir~~~~l~~-~--------~~p-~~~~--~~~--- 222 (325)
|+- -.++.....+-|+.|+|++|++++++++++. +.||++|.+...-. + +.+ ..+. .+.
T Consensus 126 qneqdsr~y~~~a~iPvLeP~d~Qea~d~~~~afelSe~~~~pVilr~ttr~~h~~~~V~~~~~~~~~~~~~~~~~~k~~ 205 (640)
T COG4231 126 QNEQDSRAYGKFALIPVLEPSDPQEAYDYVKYAFELSEKSGLPVILRTTTRVSHSRGDVEVGLNRRPIVEPEDEFFIKDP 205 (640)
T ss_pred cchhHhHHHHHhcCceeecCCChHHHHHHHHHHHHHHHHhCCCEEEEEEeeeeccceeEEeccccCCCCccccccccCCc
Confidence 322 2344444455599999999999999999983 67999996432110 0 000 0000 000
Q ss_pred CCcc------------------------ccCCceEEeeeC--CcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeecc
Q 020510 223 SSFC------------------------LPIGKAKIEREG--KDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIR 276 (325)
Q Consensus 223 ~~~~------------------------~~~gk~~vl~~G--~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~ 276 (325)
+.+. +.-.+.+.+..+ .++-||+.|..+..+++|.+.| |++..++.+.+.+
T Consensus 206 ~r~V~~p~~~~~~~~~~l~~k~~a~~~~~~~~~~n~v~~~~~~~lGII~~G~ay~yVkeAl~~l---gl~~~~lklg~~~ 282 (640)
T COG4231 206 GRYVRVPANALRHRHRKLLEKWEAAEEFINANPLNRVEGSDDAKLGIIASGIAYNYVKEALEDL---GLDDELLKLGTPY 282 (640)
T ss_pred cceeecCcccchhhHHHHHHHHHHHHHHHhhCcccccccCCCCceEEEecCccHHHHHHHHHHc---CCCceeEEecCCc
Confidence 0000 000011112223 6899999999999999986655 8999999999999
Q ss_pred CCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcCCC
Q 020510 277 PLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFPPA 317 (325)
Q Consensus 277 P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~~~ 317 (325)
|||.+.+++.++.-++|+||||..+. +-.+|.+.+.+.+
T Consensus 283 Plp~~~i~~F~~g~~~vlVVEE~~P~--iE~qv~~~l~~~g 321 (640)
T COG4231 283 PLPEQLIENFLKGLERVLVVEEGEPF--IEEQVKALLYDAG 321 (640)
T ss_pred CCCHHHHHHHHhcCcEEEEEecCCch--HHHHHHHHHHhcC
Confidence 99999999999999999999999874 7778888886654
No 48
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=99.47 E-value=1.9e-11 Score=132.84 Aligned_cols=259 Identities=15% Similarity=0.146 Sum_probs=166.4
Q ss_pred ccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCC-------ceeechhhHHHHHHHHHHHhccCCe
Q 020510 37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPE-------RVLDTPITEAGFTGIGVGAAYYGLK 109 (325)
Q Consensus 37 ~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~-------R~i~~GIaE~~~vg~A~GlA~~G~~ 109 (325)
++-.+|++.+... ..+++..-+ +..++...-....+.++ |+. .|+++ -+|.++++++.|.+.+|.|
T Consensus 4 ~~GNeAvA~~A~~----~~~~~~~YP-ITPss~i~e~l~~~~~~-g~~n~~G~~~~~vq~-EsE~~A~~av~GA~~aGar 76 (1165)
T TIGR02176 4 MDGNTAAAHVAYA----FSEVAAIYP-ITPSSTMGEYVDDWAAQ-GRKNIFGQTVKVVEM-QSEAGAAGAVHGALQTGAL 76 (1165)
T ss_pred eeHHHHHHHHHHH----hCCEEEEEC-CCCCcHHHHHHHHHHHh-CCcccCCCCceEEEc-cchHHHHHHHHhHhhcCCC
Confidence 4456666665533 346666554 33333221111222332 122 46664 8999999999999999999
Q ss_pred eEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC--CCCCC--CCCCcchHHHHHHhcCCCcEEEeeCCHH
Q 020510 110 PVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN--GAAAG--VGAQHSHCYAAWYASVPGLKVLSPYSSE 185 (325)
Q Consensus 110 p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~--G~~~g--~G~tHs~~~~a~~~~iP~~~V~~P~d~~ 185 (325)
.++.|..+ .+....+.+.. ++- ..+|+|+.... +...+ ....| .+....|. -|+.+++|++.+
T Consensus 77 a~T~TSs~-GL~LM~e~l~~-~ag--------~~~P~Vi~va~R~~~~~~~~i~~dh--~Dv~~~R~-~G~ivl~s~svQ 143 (1165)
T TIGR02176 77 TTTFTASQ-GLLLMIPNMYK-IAG--------ELLPCVFHVSARAIAAHALSIFGDH--QDVMAARQ-TGFAMLASSSVQ 143 (1165)
T ss_pred EEEecChh-HHHHHHHHHHH-HHh--------ccCCEEEEEecCCCCCCCCccCCCc--hHHHHhhc-CCeEEEeCCCHH
Confidence 99998744 55666777643 331 47898887653 33222 22334 23222233 378999999999
Q ss_pred HHHHHHHHhHh----CCCcEEEEeCccccCc---cc------------C-----------cccccc-------CCCccc-
Q 020510 186 DARGLLKAAIR----DPDPVVFLENELLYGE---SF------------P-----------VSAEVL-------DSSFCL- 227 (325)
Q Consensus 186 e~~~~l~~a~~----~~~Pv~ir~~~~l~~~---~~------------p-----------~~~~~~-------~~~~~~- 227 (325)
|+.++...|++ .+.|+++..+...+.. +. + ..++-+ +.+..+
T Consensus 144 Ea~D~al~A~~lAe~~~~Pvi~~~Dgf~tsh~~~~v~~~~~~~v~~~~~~~~~~~~~~~~l~~~~p~~~G~~~~~~~~~~ 223 (1165)
T TIGR02176 144 EVMDLALVAHLATIEARVPFMHFFDGFRTSHEIQKIEVLDYEDMASLVNQELVAAFRKRSMNPEHPHVRGTAQNPDIYFQ 223 (1165)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEecCceeccccccccCCCHHHHHhhcChhhcccccccccCCCCCceeCCCCCcchhhh
Confidence 99998887775 5679998765321100 00 0 000000 000000
Q ss_pred -------------------------cCCc----eEEe-eeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccC
Q 020510 228 -------------------------PIGK----AKIE-REGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRP 277 (325)
Q Consensus 228 -------------------------~~gk----~~vl-~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P 277 (325)
..|+ .+.. .+..|.+||++|+....+.+|++.|+++|+++++|.+++++|
T Consensus 224 ~~e~~~~~~~~~~~~v~~~~~k~~~~~gr~y~~~e~yg~~dAe~ViV~~GS~~~~~~eav~~Lr~~G~kVGli~vr~~rP 303 (1165)
T TIGR02176 224 GREAVNPYYLAVPGIVQKYMDKIAKLTGRSYHLFDYYGAPDAERVIIAMGSVAETIEETVDYLNAKGEKVGLLKVRLYRP 303 (1165)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHhCCccCcceecCCCCCCEEEEEeCCCHHHHHHHHHHHHhcCCceeEEEEeEeCC
Confidence 0111 1111 134789999999999999999999999999999999999999
Q ss_pred CCHHHHHHHH-hCCCeEEEEecCCCCC----CHHHHHHHHHcC
Q 020510 278 LDRSTINASV-RKTNRLVTVEEGFPQH----GVGAEIWCAFFP 315 (325)
Q Consensus 278 ~d~~~l~~~~-~~~~~vvvvEe~~~~G----Glg~~v~~~l~~ 315 (325)
||.+.|.+.+ +..++|+|+|.....| -|..+|...|..
T Consensus 304 Fp~e~l~~aLp~svK~I~Vler~~~~g~~g~pL~~DV~~al~~ 346 (1165)
T TIGR02176 304 FSAETFFAALPKSVKRIAVLDRTKEPGAAGEPLYLDVVSAFYE 346 (1165)
T ss_pred CCHHHHHHHHHhcCCEEEEEECCCCCCcccChHHHHHHHHHhh
Confidence 9999999988 4678999999985433 488889888864
No 49
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=99.40 E-value=3.8e-10 Score=109.01 Aligned_cols=256 Identities=18% Similarity=0.177 Sum_probs=159.1
Q ss_pred ccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEeccc
Q 020510 37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMT 116 (325)
Q Consensus 37 ~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~~ 116 (325)
++-.+|++.+... ...+++..-+ ...++...-....+..+. .-.|+++ -+|.++++++.|++..|.|.+++|..
T Consensus 6 ~~Gn~AvA~~a~~---a~~~~~a~YP-ITPss~i~e~l~~~~~~~-~~~~vq~-EsE~~a~s~v~GA~~aGar~~TaTSg 79 (365)
T COG0674 6 MDGNEAVAYAAIA---AGCRVIAAYP-ITPSSEIAEYLASWKAKV-GGVFVQM-ESEIGAISAVIGASYAGARAFTATSG 79 (365)
T ss_pred ccHHHHHHHHHHh---cCCcEEEEeC-CCCchHHHHHHHHHHhhc-CcEEEEe-ccHHHHHHHHHHHHhhCcceEeecCC
Confidence 3455666665542 3567776655 233333221123333344 3567775 99999999999999999999999985
Q ss_pred ccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC--CCCCCCCCCc-chHHHHHHhcCCCcEEEeeCCHHHHHHHHHH
Q 020510 117 FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN--GAAAGVGAQH-SHCYAAWYASVPGLKVLSPYSSEDARGLLKA 193 (325)
Q Consensus 117 ~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~--G~~~g~G~tH-s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~ 193 (325)
+ .+..+.+.+-. ++. ..+|+++.... |++.++ +++ .|.|....+.- ++.+++-+|.+|+.++...
T Consensus 80 ~-Gl~Lm~E~l~~-a~~--------~~~P~Vi~~~~R~~ps~g~-p~~~dq~D~~~~r~~-g~~~~~~~s~qEa~d~t~~ 147 (365)
T COG0674 80 Q-GLLLMAEALGL-AAG--------TETPLVIVVAQRPLPSTGL-PIKGDQSDLMAARDT-GFPILVSASVQEAFDLTLL 147 (365)
T ss_pred c-cHHHHHHHHHH-HHh--------ccCCeEEEEeccCcCCCcc-cccccHHHHHHHHcc-CceEEeeccHHHHHHHHHH
Confidence 5 55666776644 332 68999887653 333232 233 34444333333 7777888899999998887
Q ss_pred hHh----CCCcEEEEeCcccc----------Ccc--------cCc-------cccccC----CC----------ccc---
Q 020510 194 AIR----DPDPVVFLENELLY----------GES--------FPV-------SAEVLD----SS----------FCL--- 227 (325)
Q Consensus 194 a~~----~~~Pv~ir~~~~l~----------~~~--------~p~-------~~~~~~----~~----------~~~--- 227 (325)
|++ ...|+++..+..+. ..+ +.. .+.++. .+ ...
T Consensus 148 Af~iAe~~~~Pvi~~~D~~~~~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 227 (365)
T COG0674 148 AFNIAEKVLTPVIVLLDGFLASHEYEKIELLEQDLPDEEIPDYEPYTALDPSPPVLPGTEAVPDAYVTGFEHDNAGYPAE 227 (365)
T ss_pred HHHHHHHhcCCEEEeeccchhcCceeeeecCccccccccccccCcccccCCCCCCcCCCCCCCceEEeeeeccccccccc
Confidence 776 36799987542210 000 000 000000 00 000
Q ss_pred -------------cCCc----eEEee-eCCcEEEEEechhHHHHHHHHHHHH-hcCCcEEEEEeeeccCCCHHHHHHHHh
Q 020510 228 -------------PIGK----AKIER-EGKDVTITAFSKIVGLSLKAAEILA-KEGISAEVINLRSIRPLDRSTINASVR 288 (325)
Q Consensus 228 -------------~~gk----~~vl~-~G~dv~Iia~G~~~~~a~~Aa~~L~-~~Gi~~~Vi~~~~l~P~d~~~l~~~~~ 288 (325)
..|. ..+.. ++.+++||++|+....+.+++..+. ++|++++++.+++++|||.+.|.+.++
T Consensus 228 ~~v~~r~~~k~~~~~~~~~~~~~~~g~~DAe~viV~~Gss~~~~~~a~~~~~~~~g~kvg~l~vr~~rPFp~~~i~~~l~ 307 (365)
T COG0674 228 DDVIKRALRKINELTGREYEPFLYYGYEDAEIVIVAMGSSKGSTAEAVVDLLRDKGEKVGLLKVRTLRPFPAEEIREVLP 307 (365)
T ss_pred hHHHHHHHHHHHHHhcCCCccceeecCCCcCEEEEEeccchHhHHHHHHHHHHhcCceEEEEEEEEeCCCCHHHHHHHhc
Confidence 0011 11111 4578999999988888888877655 779999999999999999999999999
Q ss_pred CCCeEEEEecCCCCCCHHHHHH
Q 020510 289 KTNRLVTVEEGFPQHGVGAEIW 310 (325)
Q Consensus 289 ~~~~vvvvEe~~~~GGlg~~v~ 310 (325)
+...+.|++-....|++++-+.
T Consensus 308 ~~~~~~Vl~~e~~~g~~~~~l~ 329 (365)
T COG0674 308 KTNAVVVLDVEISLGGLAEPLY 329 (365)
T ss_pred ccceeEEEEEccCCccchhhHH
Confidence 8876666666555566444333
No 50
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=99.35 E-value=7.4e-11 Score=126.93 Aligned_cols=273 Identities=13% Similarity=0.029 Sum_probs=175.4
Q ss_pred cccccCccc--ccccHHHHHHHHHHHHHhcCCc--E---EEEecCCCCccCc--cccchhHHHHhCC-----Cceeechh
Q 020510 26 NLRNYSSAV--KQMMVREALNSALDEEMSADPK--V---FLMGEEVGEYQGA--YKISKGLLEKYGP-----ERVLDTPI 91 (325)
Q Consensus 26 ~~~~~~~~~--~~~s~~~a~~~~L~~l~~~d~~--i---v~l~~D~~~~~g~--~~~~~~~~~~~gp-----~R~i~~GI 91 (325)
+...|.... .-++-.+|+.+.+.+-.+.|.. + -++++ +.|+ -.+...|. ++.+ +-+++.++
T Consensus 7 l~~~~~~~~g~~~l~GneAivr~~l~q~~~d~~aG~~ta~~vsg----YpGsP~~~i~~~l~-~~~~~l~~~~i~~e~~~ 81 (1159)
T PRK13030 7 LDDRYTATRGRIFLTGTQALVRLLLMQRRRDRARGLNTAGFVSG----YRGSPLGGVDQALW-KAKKLLDASDIRFLPGI 81 (1159)
T ss_pred cchhhccccCCEeeeHHHHHHHHHHHhhhHHHhcCCCccceEEE----eCCCCHHHHHHHHH-HhhhhhcccceEEeecC
Confidence 344454432 3567899999999886655533 2 22222 2222 12223333 3311 37899999
Q ss_pred hHHHHHHHHHHHh---------ccCCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCC-CCCC
Q 020510 92 TEAGFTGIGVGAA---------YYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAG-VGAQ 161 (325)
Q Consensus 92 aE~~~vg~A~GlA---------~~G~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g-~G~t 161 (325)
+|.-++.++.|.+ ..|.+.+++.. ...++|+.|.+++ +.+. |...+-.++++..|..+.. .-..
T Consensus 82 NEkvA~e~a~Gaq~~~~~~~~~~~Gv~~l~~~K-~~GvnvaaD~l~~-~n~~----G~~~~GG~v~v~gDDpg~~SSq~e 155 (1159)
T PRK13030 82 NEELAATAVLGTQQVEADPERTVDGVFAMWYGK-GPGVDRAGDALKH-GNAY----GSSPHGGVLVVAGDDHGCVSSSMP 155 (1159)
T ss_pred CHHHHHHHHHHhccccccCCccccceEEEEecC-cCCcccchhHHHH-HHhh----cCCCCCcEEEEEecCCCCccCcCH
Confidence 9999999999999 77777799888 6689999999986 4432 2223556666654433211 0111
Q ss_pred cchHH-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEeCcccc--------Cc-cc-Cccc-cccCCC-
Q 020510 162 HSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLY--------GE-SF-PVSA-EVLDSS- 224 (325)
Q Consensus 162 Hs~~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~ir~~~~l~--------~~-~~-p~~~-~~~~~~- 224 (325)
| |+. .+.+..|| |+.|+|++|++++.+++++ .+-||.+|...... .. +. +..+ ....+.
T Consensus 156 q-dSr~~~~~a~iP---vl~Ps~~qE~~d~~~~a~~lSr~~~~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~~f~~~~~ 231 (1159)
T PRK13030 156 H-QSDFALIAWHMP---VLNPANVQEYLDFGLYGWALSRYSGAWVGFKAISETVESGSTVDLDPDRTRWPAPEDFTPPAG 231 (1159)
T ss_pred H-HHHHHHHHcCCc---eeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCccccCCCcc
Confidence 3 332 36667777 9999999999999999997 36799998542210 00 00 0000 000000
Q ss_pred ---ccc--------------------------cCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcC-----CcEEEE
Q 020510 225 ---FCL--------------------------PIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEG-----ISAEVI 270 (325)
Q Consensus 225 ---~~~--------------------------~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~G-----i~~~Vi 270 (325)
..+ ++.+..+-.++.++.||++|.....++||.+.|...+ +.++|+
T Consensus 232 ~~~~r~~~~p~~~~~~~~~~rl~~~~~~~~~~~ln~~~~~~~~~~iGIItsG~ay~~v~EAL~~Lgl~~~~~~~lgiril 311 (1159)
T PRK13030 232 GLHNRWPDLPSLAIEARLAAKLPAVRAFARANSIDRWVAPSPDARVGIVTCGKAHLDLMEALRRLGLDDADLRAAGIRIY 311 (1159)
T ss_pred cccccCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCCCCEEEEEeCccHHHHHHHHHHcCCCcccccccCccEE
Confidence 000 1222111122367999999999999999999885433 247888
Q ss_pred EeeeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcC
Q 020510 271 NLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFP 315 (325)
Q Consensus 271 ~~~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~ 315 (325)
.+...+|||.+.+.+.++..++|+||||.... +-.+|.+.+.+
T Consensus 312 Kvgm~~PL~~~~i~~F~~g~d~VlVVEE~~p~--iE~Qlk~~l~~ 354 (1159)
T PRK13030 312 KVGLSWPLEPTRLREFADGLEEILVIEEKRPV--IEQQIKDYLYN 354 (1159)
T ss_pred EeCCccCCCHHHHHHHHhcCCEEEEEeCCchH--HHHHHHHHHHh
Confidence 88899999999999999999999999998863 66777777754
No 51
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=99.30 E-value=1e-10 Score=117.49 Aligned_cols=284 Identities=15% Similarity=0.189 Sum_probs=175.5
Q ss_pred ChhhhHHhhhhcCCCCccccc--c---ccccccccCc-----ccccccHHHHHHHHHHHHHhcCCc-EEEEecCCCCccC
Q 020510 1 MWGIIRQKVAAGGGSPVARIR--P---VVSNLRNYSS-----AVKQMMVREALNSALDEEMSADPK-VFLMGEEVGEYQG 69 (325)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~-----~~~~~s~~~a~~~~L~~l~~~d~~-iv~l~~D~~~~~g 69 (325)
.|++.+|+-+|.|+.|.|... | .-...+.|+. ...+.....+.++.+.++++.|++ ..+.++|..+|.+
T Consensus 355 ~~~~ap~~~~Rm~~~p~angg~l~~eL~lPD~r~~~v~~~~~g~~~~~~t~~lg~~l~dv~k~N~~~fRvf~PDE~aSNr 434 (793)
T COG3957 355 LRELAPKGEERMGANPHANGGLLPRELPLPDLRDYAVEVSEPGAVTAESTTALGRFLRDVMKLNPDNFRVFGPDETASNR 434 (793)
T ss_pred HHHhccccccccCCCCcccCccccccCCCCChhhcCcccCCCCccchhhHHHHHHHHHHHHhcCccceEeeCCCcchhhh
Confidence 389999999999999999987 2 2222233333 323445578999999999999988 9999999987766
Q ss_pred ccccchhHHHHh------------CCCceeechhhHHHHHHHHHHHhccCCeeEEecccccHHHHHHHHHHHHHhhc---
Q 020510 70 AYKISKGLLEKY------------GPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKS--- 134 (325)
Q Consensus 70 ~~~~~~~~~~~~------------gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~~~~f~~ra~dqi~~~~a~~--- 134 (325)
..++.+.+...+ ...|+++ ..+|+...|.+.|.++.|.+-++++|-+|. +..|-+.|+.+++
T Consensus 435 l~~v~~~tkr~~~~~~~~ed~~lsp~GRV~e-~LSEh~c~Gwlegy~LtGr~glf~sYEaF~--~iv~sm~nQh~kwl~v 511 (793)
T COG3957 435 LGGVLKVTKRVWMAVTLPEDDFLSPDGRVME-VLSEHACQGWLEGYLLTGRHGLFASYEAFA--HIVDSMFNQHAKWLKV 511 (793)
T ss_pred hHHHHHHhhhhhcccccCcccccCCCceeeh-hhcHHHHHHHHHHHHhcCCccceeeHHHHH--HHHHHHHhhhHHHHHH
Confidence 544433333221 1368888 699999999999999999999999987753 2233333333322
Q ss_pred ----cccCCCCccCC-EEEEeCCCCC--CCCCCCcch-HHH-HHHhcCC-CcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510 135 ----NYMSSGQISVP-IVFRGPNGAA--AGVGAQHSH-CYA-AWYASVP-GLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 135 ----~~~~~~~~~~p-vv~~~~~G~~--~g~G~tHs~-~~~-a~~~~iP-~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir 204 (325)
.|+ .+.| ..++...+.. ..+|-||+. .++ .++...+ .+.|+.|.|.+-+..++..+++..+-+.+.
T Consensus 512 ~~e~~wr----~~~~Sln~l~TS~vw~QdhNGfsHQdPgf~~~~~~k~~d~vRvyfPpDaNtlLav~d~~l~s~n~in~i 587 (793)
T COG3957 512 TREVEWR----RPIPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVANKKSDIVRVYFPPDANTLLAVYDHCLRSRNKINVI 587 (793)
T ss_pred HHhcccC----CCCCcccceeehhhhhcccCCCccCCchHHHHHHhhccCceeEecCCCCcchhhhhhHHhhccCceEEE
Confidence 222 2332 1112122222 347899943 333 4555455 678999999999999999999975533332
Q ss_pred -eCccccCcccCccccccCCCccccCC--ceEEee--e-CCcEEEEEechhH-HHHHHHHHHHHhcC--CcEEEE---Ee
Q 020510 205 -ENELLYGESFPVSAEVLDSSFCLPIG--KAKIER--E-GKDVTITAFSKIV-GLSLKAAEILAKEG--ISAEVI---NL 272 (325)
Q Consensus 205 -~~~~l~~~~~p~~~~~~~~~~~~~~g--k~~vl~--~-G~dv~Iia~G~~~-~~a~~Aa~~L~~~G--i~~~Vi---~~ 272 (325)
.+|. +.|.--.+.+......-| -+++.. + ..|+++.+.|.+. -++++|+..|++++ +.++|| |+
T Consensus 588 Va~K~----p~pq~~t~~qA~~~~~~G~~iwewas~d~gepdvV~A~~Gd~~t~e~laAa~~L~e~~p~l~vRvVnVvdl 663 (793)
T COG3957 588 VASKQ----PRPQWLTMEQAEKHCTDGAGIWEWASGDDGEPDVVMACAGDVPTIEVLAAAQILREEGPELRVRVVNVVDL 663 (793)
T ss_pred EecCC----CcceeecHHHHHHHhhcCcEEEEeccCCCCCCCEEEEecCCcchHHHHHHHHHHHHhCccceEEEEEEecc
Confidence 2222 101000000000001111 122221 1 2589999999665 79999999999998 666555 55
Q ss_pred eeccCCC-------HHHHHHHHhCCCeEEE
Q 020510 273 RSIRPLD-------RSTINASVRKTNRLVT 295 (325)
Q Consensus 273 ~~l~P~d-------~~~l~~~~~~~~~vvv 295 (325)
..|.|-. .+.+....-+.+.++.
T Consensus 664 ~rLq~~~~hphg~~d~efd~lFt~d~pvif 693 (793)
T COG3957 664 MRLQPPHDHPHGLSDAEFDSLFTTDKPVIF 693 (793)
T ss_pred hhccCCccCCCCCCHHHHHhcCCCCcceee
Confidence 5555433 3345554444455543
No 52
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=99.27 E-value=8.1e-10 Score=118.75 Aligned_cols=273 Identities=15% Similarity=0.054 Sum_probs=178.3
Q ss_pred ccccccccCccc--ccccHHHHHHHHHHHHHhcC--CcE---EEEecCCCCccCc--cccchhHHHHhCC-----Cceee
Q 020510 23 VVSNLRNYSSAV--KQMMVREALNSALDEEMSAD--PKV---FLMGEEVGEYQGA--YKISKGLLEKYGP-----ERVLD 88 (325)
Q Consensus 23 ~~~~~~~~~~~~--~~~s~~~a~~~~L~~l~~~d--~~i---v~l~~D~~~~~g~--~~~~~~~~~~~gp-----~R~i~ 88 (325)
..+....|.... .-++-.+|+.+.+.+-.+.| -.+ -++++ +.|+ -.+...|. ++.. +-+++
T Consensus 12 ~~~l~d~y~~~~g~~~l~G~qAivR~~l~q~~~D~~aG~~ta~~vsG----YpGsP~~~id~~l~-~~~~~l~~~~i~fe 86 (1165)
T PRK09193 12 DVTLDDKYTLERGRVFLTGTQALVRLPLLQRERDRAAGLNTAGFVSG----YRGSPLGGLDQELW-RAKKHLAAHDIVFQ 86 (1165)
T ss_pred CCCcccccccccCCeeeeHHHHHHHHHHHHhhHHHhcCCCccceEEe----eCCCCHHHHHHHHH-HhhhhhcccceEEe
Confidence 445555666543 35678999999988755555 223 33332 2222 12223333 2211 37899
Q ss_pred chhhHHHHHHHH---------HHHhccCCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCC-C
Q 020510 89 TPITEAGFTGIG---------VGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAG-V 158 (325)
Q Consensus 89 ~GIaE~~~vg~A---------~GlA~~G~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g-~ 158 (325)
-|++|.-++.++ .|.+..|.+.+++.. ...++|+.|.+++ +.+. |...+-.++++..|..+.. .
T Consensus 87 ~~~NEkvAae~~~GsQ~~~~~~~a~~~Gv~~l~y~K-~pGvn~aaD~l~~-~n~~----G~~~~GGvv~v~gDDpg~~SS 160 (1165)
T PRK09193 87 PGLNEDLAATAVWGSQQVNLFPGAKYDGVFGMWYGK-GPGVDRSGDVFRH-ANAA----GTSPHGGVLALAGDDHAAKSS 160 (1165)
T ss_pred eccCHHHHHHHHhhhcccccccceeeccceEEEecC-cCCccccHhHHHH-HHhh----cCCCCCcEEEEEecCCCCccc
Confidence 999999999999 777999999999998 6689999999986 3432 2223455666654433211 1
Q ss_pred CCCcchHH-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEeCcccc-----------CcccCccc--cc
Q 020510 159 GAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLY-----------GESFPVSA--EV 220 (325)
Q Consensus 159 G~tHs~~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~ir~~~~l~-----------~~~~p~~~--~~ 220 (325)
-..| |+. ...+..|| |+.|+|++|++++..+++. .+-||.+|...... +....... +.
T Consensus 161 q~eq-dSr~~~~~a~iP---vl~Ps~~qE~~d~~~~g~~lSr~~g~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~~f~~ 236 (1165)
T PRK09193 161 TLPH-QSEHAFKAAGMP---VLFPANVQEILDYGLHGWAMSRYSGLWVGMKTVTDVVESSASVDVDPDRVQIVLPEDFEM 236 (1165)
T ss_pred cchh-hhHHHHHHcCCc---eeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCcccccC
Confidence 1123 333 36667777 9999999999999999987 36799998532210 00000000 00
Q ss_pred cCC----Ccc------------------------ccCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCc------
Q 020510 221 LDS----SFC------------------------LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGIS------ 266 (325)
Q Consensus 221 ~~~----~~~------------------------~~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~------ 266 (325)
+.. .+. -++++..+-.++.++.||++|.....+++|.+.| |++
T Consensus 237 ~~~g~~~r~~~~p~~~~~~~~~~rl~a~~a~a~~n~ln~~~~~~~~~~iGIItsG~~y~~v~eal~~l---g~~~~~~~~ 313 (1165)
T PRK09193 237 PPGGLNIRWPDPPLEQEARLLDYKLYAALAYARANKLDRVVIDSPNARLGIVAAGKAYLDVRQALRDL---GLDEETAAR 313 (1165)
T ss_pred CcccccccCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCeeecCCCCCCEEEEecCccHHHHHHHHHHc---CCChhhhcc
Confidence 000 000 0111111101136799999999999999998776 454
Q ss_pred --EEEEEeeeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcC
Q 020510 267 --AEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFP 315 (325)
Q Consensus 267 --~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~ 315 (325)
++|+.+...+|||.+.+++.++....|+||||-... +-++|.+.+.+
T Consensus 314 ~gi~ilKvgm~~PL~~~~i~~Fa~g~~~vlVVEE~~p~--iE~qlk~~l~~ 362 (1165)
T PRK09193 314 LGIRLYKVGMVWPLEPQGVRAFAEGLDEILVVEEKRQI--IEYQLKEELYN 362 (1165)
T ss_pred cCCCEEEeCCCCCCCHHHHHHHHhcCCEEEEEecCchH--HHHHHHHHHhh
Confidence 899999999999999999999999999999998764 77888888854
No 53
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=99.22 E-value=6.3e-10 Score=119.40 Aligned_cols=279 Identities=13% Similarity=0.045 Sum_probs=176.4
Q ss_pred cccccccccCccc--ccccHHHHHHHHHHHHHhcCCc--EE---EEecCCC-CccCccccchhHHHH---h-CCCceeec
Q 020510 22 PVVSNLRNYSSAV--KQMMVREALNSALDEEMSADPK--VF---LMGEEVG-EYQGAYKISKGLLEK---Y-GPERVLDT 89 (325)
Q Consensus 22 ~~~~~~~~~~~~~--~~~s~~~a~~~~L~~l~~~d~~--iv---~l~~D~~-~~~g~~~~~~~~~~~---~-gp~R~i~~ 89 (325)
+..++...|.... .-++-.+|+.+.+..-.+.|.+ +- ++++=-+ .++ .+...|.+. . ..+-+++-
T Consensus 14 ~~~~l~d~y~~~~g~~~l~G~qAlvR~~l~q~~~D~~aGl~tag~vsgYpGSPl~---~id~~l~~~~~~l~~~~i~fe~ 90 (1186)
T PRK13029 14 RAVSLDDKYTLERGRIYISGTQALVRLPLLQRARDRRAGLNTAGFISGYRGSPLG---ALDQALWKAKKHLAAADVVFQP 90 (1186)
T ss_pred ccCCcccccccccCCEeecHHHHHHHHHHHHhHHHHHcCCCccceEEecCCCCHH---HHHHHHHHHhhhccccceEEee
Confidence 4455666776643 3567889999888544443321 11 2221111 111 222334332 1 01378899
Q ss_pred hhhHHHH---------HHHHHHHhccCCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCC-CC
Q 020510 90 PITEAGF---------TGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAG-VG 159 (325)
Q Consensus 90 GIaE~~~---------vg~A~GlA~~G~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g-~G 159 (325)
|++|.-+ +.++.|.+..|.+.+++.. ...++|+.|.+++.... +...+-.++++..|..+.. .-
T Consensus 91 ~~NEklAatav~Gsq~~e~~~~a~~dGv~~lwygK-~pGvn~aaD~l~h~n~~-----gt~~~GGvv~v~gDDpg~~SSq 164 (1186)
T PRK13029 91 GVNEELAATAVWGSQQLELDPGAKRDGVFGMWYGK-GPGVDRSGDALRHANLA-----GTSPLGGVLVLAGDDHGAKSSS 164 (1186)
T ss_pred cCCHHHHHHHhhhhhhcccccceeeccceEEEecC-cCCcccchhHHHHhhcc-----ccCCCCcEEEEEecCCCCcccc
Confidence 9999999 7777888889999999998 66899999999864321 1234556666654433211 11
Q ss_pred CCcchHH-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEeCcccc-----------CcccCccccccCC
Q 020510 160 AQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLY-----------GESFPVSAEVLDS 223 (325)
Q Consensus 160 ~tHs~~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~ir~~~~l~-----------~~~~p~~~~~~~~ 223 (325)
..| |+. ...+..|| |+.|+|++|+.++..+++. .+-||.++...... +.......+....
T Consensus 165 ~eq-dSr~~~~~a~iP---vl~Ps~~qE~~d~~~~a~~lSr~~g~~V~lr~~t~v~~s~~~V~~~~~r~~~~~p~~f~~~ 240 (1186)
T PRK13029 165 VAH-QSDHTFIAWGIP---VLYPASVQDYLDYGLHGWAMSRYSGLWVGMKCVTEVVESTASVDLDPDRVDIVLPDDFVLP 240 (1186)
T ss_pred CHH-HHHHHHHHcCCc---eeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEeeeeeecceeeecCCcccccCCcccccCC
Confidence 123 333 36667777 9999999999999999887 36799998543211 0000000000000
Q ss_pred C----ccc--------------------------cCCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhc-----CCcEE
Q 020510 224 S----FCL--------------------------PIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE-----GISAE 268 (325)
Q Consensus 224 ~----~~~--------------------------~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~-----Gi~~~ 268 (325)
. ..+ ++++..+-.++.++.||++|.....+++|.+.|.-. .+.++
T Consensus 241 ~~g~~~r~~~~p~~~e~~~~~~kl~a~~a~a~~n~ln~~~~~~~~~~~GIItsG~~y~~v~eAl~~lgl~~~~~~~~gi~ 320 (1186)
T PRK13029 241 PGGLHIRWPDDPLAQEERMLEFKWYAALAYVRANRLNRLVIDGPNPRLGIIAAGKAYLDVRQALRDLGLDDATCAALGIR 320 (1186)
T ss_pred ccccccccCCCcHHHHHHHHHHHHHHHHHHHHhCCCCEEeccCCCCCEEEEecCccHHHHHHHHHHcCCChhhccccCCC
Confidence 0 000 111111101236799999999999999998766211 12389
Q ss_pred EEEeeeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcC
Q 020510 269 VINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFP 315 (325)
Q Consensus 269 Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~ 315 (325)
|+.+...+|||.+.+++.++..+.|+||||-... +-++|.+.+.+
T Consensus 321 ilKvgm~~PL~~~~i~~Fa~g~d~vlVVEE~~p~--iE~qlk~~l~~ 365 (1186)
T PRK13029 321 LLKVGCVWPLDPQSVREFAQGLEEVLVVEEKRAV--IEYQLKEELYN 365 (1186)
T ss_pred EEEeCCCCCCCHHHHHHHHhcCCEEEEEecCchH--HHHHHHHHHhh
Confidence 9999999999999999999999999999998764 77888888865
No 54
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=99.21 E-value=1.1e-09 Score=113.79 Aligned_cols=259 Identities=17% Similarity=0.212 Sum_probs=179.9
Q ss_pred HHHHHHhcCCcEEEEecCCCCccCcccc----------------chhHHHHhCCCceeechhhHHHHHHHHHHHhccC--
Q 020510 46 ALDEEMSADPKVFLMGEEVGEYQGAYKI----------------SKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG-- 107 (325)
Q Consensus 46 ~L~~l~~~d~~iv~l~~D~~~~~g~~~~----------------~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G-- 107 (325)
++..|+.+...|-+.++|..+ |+|.- ...|.+.-|+=-++|...+|.+++|+-+|.|...
T Consensus 896 AfGsLl~eG~~VRL~GQDsrR--GTF~QRHavl~D~~tg~e~~Pl~~l~~~q~~f~vydS~LSEyAa~GFEYGYSv~~pd 973 (1228)
T PRK12270 896 AFGSLLLEGTPVRLSGQDSRR--GTFSQRHAVLIDRETGEEYTPLQNLSDDQGKFLVYDSLLSEYAAMGFEYGYSVERPD 973 (1228)
T ss_pred HHHHHHhcCceeeeeccccCC--cceeeeeEEEecCCCCcccCcHhhcCCCcceEEEecchhhHHHhhccceeeecCCCc
Confidence 445677788999999999875 55532 1123333333456899999999999999999885
Q ss_pred CeeEEecccccH---HHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCCcch-HHHHHHhc--CCCcEEEee
Q 020510 108 LKPVVEFMTFNF---SMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSH-CYAAWYAS--VPGLKVLSP 181 (325)
Q Consensus 108 ~~p~v~~~~~~f---~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tHs~-~~~a~~~~--iP~~~V~~P 181 (325)
..++++-++.+| .|-..|++..+ +..+| .+...||+..+.|. -|.|+.||. .+|.+|.- -.||+|..|
T Consensus 974 aLVlWEAQFGDF~NGAQtiIDefIss-~e~KW----gQ~S~vvlLLPHGy-EGQGPdHSSaRiERfLqlcAe~nm~Va~p 1047 (1228)
T PRK12270 974 ALVLWEAQFGDFANGAQTIIDEFISS-GEAKW----GQRSGVVLLLPHGY-EGQGPDHSSARIERFLQLCAEGNMTVAQP 1047 (1228)
T ss_pred ceeeehhhhcccccchHHHHHHHHhh-hHhhh----ccccceEEEccCCc-CCCCCCcchHHHHHHHHhhccCCeEEEcc
Confidence 778888888887 56888988654 55556 57888999988765 578999964 77876654 579999999
Q ss_pred CCHHHHHHHHHH-hHhC-CCcEEEEeCccccCcccCccc--cccCCCccccCCceEEeeeC-CcEEEEEechhHHHHHHH
Q 020510 182 YSSEDARGLLKA-AIRD-PDPVVFLENELLYGESFPVSA--EVLDSSFCLPIGKAKIEREG-KDVTITAFSKIVGLSLKA 256 (325)
Q Consensus 182 ~d~~e~~~~l~~-a~~~-~~Pv~ir~~~~l~~~~~p~~~--~~~~~~~~~~~gk~~vl~~G-~dv~Iia~G~~~~~a~~A 256 (325)
++|..++.+|+. ++.. ..|.+|..+|.+.+.+..... ++.+..+.--++...+.... -+-+|+++|..+....+.
T Consensus 1048 sTPA~yFHLLRrqa~~~~~rPLvVfTPKSmLR~KaA~S~vedFT~g~F~pVi~D~~~~~~~~V~RVlLcSGKvYYdL~a~ 1127 (1228)
T PRK12270 1048 STPANYFHLLRRQALSGPRRPLVVFTPKSMLRLKAAVSDVEDFTEGKFRPVIDDPTVDDGAKVRRVLLCSGKLYYDLAAR 1127 (1228)
T ss_pred CChHHHHHHHHHHhhcCCCCCeEEEChHHhhcchhhcCCHHHhccCCceecCCCCCCCCccceeEEEEEcchhHHHHHHH
Confidence 999999999975 4443 579999999887654322111 11111111111111111111 245889999999988765
Q ss_pred HHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCC---eEEEEecCCCCCCHHHHHHHHHc
Q 020510 257 AEILAKEGISAEVINLRSIRPLDRSTINASVRKTN---RLVTVEEGFPQHGVGAEIWCAFF 314 (325)
Q Consensus 257 a~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~---~vvvvEe~~~~GGlg~~v~~~l~ 314 (325)
.++ ...-++.|+.+-.|+|||.+.|.+.+.++. .++.+-|...+-|-...++..|.
T Consensus 1128 R~k--~~~~d~AIvRvEQLyP~p~~~l~~~l~~ypna~e~~wvQeEP~NqGaw~f~~~~l~ 1186 (1228)
T PRK12270 1128 REK--DGRDDTAIVRVEQLYPLPRAELREALARYPNATEVVWVQEEPANQGAWPFMALNLP 1186 (1228)
T ss_pred HHh--cCCCceEEEEhhhhCCCCHHHHHHHHHhCCCcceeEEeccCcccCCCchhhhhhhH
Confidence 432 334579999999999999999999999874 35666665666666666655543
No 55
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=99.20 E-value=2.5e-10 Score=96.32 Aligned_cols=117 Identities=30% Similarity=0.334 Sum_probs=87.0
Q ss_pred HhCCCceeechhhHHHHHHHHHHHhccCCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC-CCCCCC
Q 020510 80 KYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAGV 158 (325)
Q Consensus 80 ~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~~g~ 158 (325)
+. +++.+..++.|++++++|.|+|+.|.+|++.+.+..++..+++++.+ ++. .++|++++..+ +.....
T Consensus 32 ~~-~~~~~~~~~~E~~a~~~A~G~a~~~~~~v~~~~~gpg~~~~~~~l~~-a~~--------~~~Pvl~i~~~~~~~~~~ 101 (154)
T cd06586 32 EG-DKRIIDTVIHELGAAGAAAGYARAGGPPVVIVTSGTGLLNAINGLAD-AAA--------EHLPVVFLIGARGISAQA 101 (154)
T ss_pred cc-CCceEEeeCCHHHHHHHHHHHHHhhCCEEEEEcCCCcHHHHHHHHHH-HHh--------cCCCEEEEeCCCChhhhc
Confidence 45 78999999999999999999999988888887756677899999984 443 57999998754 333323
Q ss_pred CCCc-chHHHHHHhcCCCcEEEeeCCHHHHHHHHHH---hHhCCCcEEEEeC
Q 020510 159 GAQH-SHCYAAWYASVPGLKVLSPYSSEDARGLLKA---AIRDPDPVVFLEN 206 (325)
Q Consensus 159 G~tH-s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~---a~~~~~Pv~ir~~ 206 (325)
+.+| .+...++++.+|++.+..|++.++...+.+. +...++|++++.+
T Consensus 102 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~gPv~l~ip 153 (154)
T cd06586 102 KQTFQSMFDLGMYRSIPEANISSPSPAELPAGIDHAIRTAYASQGPVVVRLP 153 (154)
T ss_pred cCcccccCHHHHHHHhhheEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEcc
Confidence 4445 2344689999999999988776655544432 2334679999754
No 56
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=98.83 E-value=1.5e-07 Score=94.63 Aligned_cols=260 Identities=18% Similarity=0.212 Sum_probs=178.2
Q ss_pred HHHHHHHHhcCCcEEEEecCCCCccCccccchh-HHHH----------------hCCCceeechhhHHHHHHHHHHHhcc
Q 020510 44 NSALDEEMSADPKVFLMGEEVGEYQGAYKISKG-LLEK----------------YGPERVLDTPITEAGFTGIGVGAAYY 106 (325)
Q Consensus 44 ~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~-~~~~----------------~gp~R~i~~GIaE~~~vg~A~GlA~~ 106 (325)
+-++..|+++.-.|-+-++|+.+ |+|.-.+. |.++ -.|=-+-|...+|.+.+|+-.|.|+.
T Consensus 656 alAFgsLl~EG~hVRlSGQDVER--GTFShRH~VLHDQ~~d~~~y~PlnhL~~~Qa~ytV~NSSLSEygVLGFElGYsm~ 733 (1017)
T KOG0450|consen 656 ALAFGSLLKEGIHVRLSGQDVER--GTFSHRHHVLHDQEVDKRTYIPLNHLWPNQAPYTVCNSSLSEYGVLGFELGYSMA 733 (1017)
T ss_pred HHHHHHHHhcCceEEeecccccc--cccccchhhhcccccCcceecchhhcCCCCCceeeeccchhhhheecceeccccc
Confidence 33455788889999999999975 56643111 2111 11334567889999999999999999
Q ss_pred --CCeeEEecccccH---HHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCCcch-HHHHHHhc-------C
Q 020510 107 --GLKPVVEFMTFNF---SMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSH-CYAAWYAS-------V 173 (325)
Q Consensus 107 --G~~p~v~~~~~~f---~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tHs~-~~~a~~~~-------i 173 (325)
...++++.++.+| .+..+||+.. .+..+|. +...+|+..+.|. .|.|+.||. ..|.+|.. +
T Consensus 734 sPNaLVlWEAQFGDFaNtAQ~IiDQFIs-sGqaKW~----rqsGlVllLPHGy-eG~GPEHSSaR~ERfLQm~nddp~~~ 807 (1017)
T KOG0450|consen 734 SPNALVLWEAQFGDFANTAQCIIDQFIS-SGQAKWV----RQSGLVLLLPHGY-EGMGPEHSSARPERFLQMSNDDPDVF 807 (1017)
T ss_pred CCCceEEeehhhccccccchhhHHhHhc-cchhhhh----hhcCeEEEccCCc-CCCCcccccccHHHHHHhccCCCccC
Confidence 5788999888887 5688999864 4556664 5678888888765 567999964 55544421 1
Q ss_pred -------------CCcEEEeeCCHHHHHHHHHHhHh--CCCcEEEEeCccccCcccCcc--ccccCCCccc-----cCCc
Q 020510 174 -------------PGLKVLSPYSSEDARGLLKAAIR--DPDPVVFLENELLYGESFPVS--AEVLDSSFCL-----PIGK 231 (325)
Q Consensus 174 -------------P~~~V~~P~d~~e~~~~l~~a~~--~~~Pv~ir~~~~l~~~~~p~~--~~~~~~~~~~-----~~gk 231 (325)
=|+.|+-+++|..++.+|+.-+. ...|.+|..++.|.+.+.... .+. ++...| +-|+
T Consensus 808 p~~~~~~~~Ql~dcNw~vvn~tTPaNyfHvLRRQi~~~FRKPliif~pKsLLRHp~arS~~~ef-~~g~~fq~vi~e~g~ 886 (1017)
T KOG0450|consen 808 PDEEEFLQRQLQDCNWQVVNCTTPANYFHVLRRQIHRPFRKPLIIFTPKSLLRHPEARSSFSEF-DEGTGFQRVIPEDGK 886 (1017)
T ss_pred CcccHHHHHHHhcCCeEEEecCChHHHHHHHHHHhhhcccCceEEeccHHhhcCccccCCHHHh-ccCCCCceecccccc
Confidence 37789999999999999986554 578999998887765432111 011 111111 1233
Q ss_pred eEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCC--eEEEEecCCCCCCHHHHH
Q 020510 232 AKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN--RLVTVEEGFPQHGVGAEI 309 (325)
Q Consensus 232 ~~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~--~vvvvEe~~~~GGlg~~v 309 (325)
.-.-.++-+-+|+++|.......++-+....+ -++.+..+-.|.|||.+.|.+.++++. .|+...|...+-|-.+.|
T Consensus 887 ~~~~pe~vkrlv~csGkVyydL~k~Rk~~~~~-~~vAi~RvEQl~PFp~dli~~e~~~YpnaEivWcQEE~~NmG~w~Yv 965 (1017)
T KOG0450|consen 887 AAQNPENVKRLVFCSGKVYYDLTKERKEVGLE-GDVAITRVEQLSPFPFDLIQQELNKYPNAEIVWCQEEHKNMGAWDYV 965 (1017)
T ss_pred ccCChhhceEEEEecceEehhhhHHHHhcCcc-cceeEEEeeccCCCcHHHHHHHHHhCCCceeeehhhhhcccCchhhc
Confidence 33334556778999998888776665554322 378999999999999999999999886 466664444566666666
Q ss_pred HHHH
Q 020510 310 WCAF 313 (325)
Q Consensus 310 ~~~l 313 (325)
.-.+
T Consensus 966 ~PRl 969 (1017)
T KOG0450|consen 966 EPRL 969 (1017)
T ss_pred chHH
Confidence 5443
No 57
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=98.56 E-value=4.9e-07 Score=94.13 Aligned_cols=264 Identities=18% Similarity=0.233 Sum_probs=168.2
Q ss_pred cHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccc----------------hhHHHHhCCCceeechhhHHHHHHHHH
Q 020510 38 MVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKIS----------------KGLLEKYGPERVLDTPITEAGFTGIGV 101 (325)
Q Consensus 38 s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~----------------~~~~~~~gp~R~i~~GIaE~~~vg~A~ 101 (325)
.+..+=.-+...++.....+.+-+.|..+ |+|... ..+...-|.=..+|.+.+|.+++++=.
T Consensus 567 DW~~aE~LAfatll~eG~~iRlsGqDs~R--GTF~hRHaVlhdq~~~~~y~PL~~l~~~q~~f~v~nS~LSEeAvlgFEY 644 (906)
T COG0567 567 DWGMAETLAFATLLDEGHPIRLSGQDSGR--GTFSHRHAVLHDQKTGETYIPLNHLSKGQGKFEVINSPLSEEAVLGFEY 644 (906)
T ss_pred chhHHHHhcccceeccCCccccccccCCC--cCccccceeeecccCccccChhhhcccccceEEEEechhhHHHHHhhhh
Confidence 33333333344566677888888898864 455321 112222223356889999999999999
Q ss_pred HHhccC--CeeEEecccccH---HHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCCcch-HHHHHHhcC--
Q 020510 102 GAAYYG--LKPVVEFMTFNF---SMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSH-CYAAWYASV-- 173 (325)
Q Consensus 102 GlA~~G--~~p~v~~~~~~f---~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tHs~-~~~a~~~~i-- 173 (325)
|-|..- ...+++-++.+| .+..+||...+ +..+| .....+++..+.|. -|.|+.||. .++.++...
T Consensus 645 GYs~~~p~~lvlWEAQFGDFaNgAQvviDQfisS-ge~KW----~r~sgLv~lLPHgy-EGQGPEHSSaRlER~LQLcaE 718 (906)
T COG0567 645 GYSLANPKTLVLWEAQFGDFANGAQVVIDQFISS-GEQKW----GRMSGLVMLLPHGY-EGQGPEHSSARLERFLQLCAE 718 (906)
T ss_pred hhhhcCCchhhhhhhhhcccccCCeeeecccccc-HHHHH----HHhcCceEEccCCC-CCCCCcCccchhHHHHHhhHH
Confidence 999885 446666666766 45888998653 44455 35667777777654 567999964 667766554
Q ss_pred CCcEEEeeCCHHHHHHHHHHhH-h-CCCcEEEEeCccccCcccCccc--cccCCCccccCCceEEeeeCCcEEEEEechh
Q 020510 174 PGLKVLSPYSSEDARGLLKAAI-R-DPDPVVFLENELLYGESFPVSA--EVLDSSFCLPIGKAKIEREGKDVTITAFSKI 249 (325)
Q Consensus 174 P~~~V~~P~d~~e~~~~l~~a~-~-~~~Pv~ir~~~~l~~~~~p~~~--~~~~~~~~~~~gk~~vl~~G~dv~Iia~G~~ 249 (325)
-||+|..|+++.+.+.+++.-+ + ...|.+|..++.+.+.+...+. ++.+..+...+.........-+.+++++|.+
T Consensus 719 ~NmqV~~pstpaq~fHlLRrq~~r~~rkPLiimtPKslLR~~~a~S~~~el~~~~F~~vl~d~~~~~~~v~rvvlcSGKv 798 (906)
T COG0567 719 NNMQVVVPSTPAQYFHLLRRQALRDFRKPLIVMTPKSLLRHKLAVSSLEELTEGTFQPVLEDIDELDPKVKRVVLCSGKV 798 (906)
T ss_pred hCCEEEecCcHHHHHHHHHHHHhhcccCceEecChhhhhhccccCCchhhhchhhhhhhhccccccccceeeEEeeccch
Confidence 4999999999999999997444 3 3689999888776553221111 1111111101111100111135578888988
Q ss_pred HHHHHHHHHHHHhcC-CcEEEEEeeeccCCCHHHHHHHHhCCC---eEEEEecCCCCCCHHHHHHHH
Q 020510 250 VGLSLKAAEILAKEG-ISAEVINLRSIRPLDRSTINASVRKTN---RLVTVEEGFPQHGVGAEIWCA 312 (325)
Q Consensus 250 ~~~a~~Aa~~L~~~G-i~~~Vi~~~~l~P~d~~~l~~~~~~~~---~vvvvEe~~~~GGlg~~v~~~ 312 (325)
.....+.. ++.| .++-++.+..|+||+.+.+.+.++++- .++.+-|...+-|-...+...
T Consensus 799 yydl~~~r---~~~g~~dvaiiRiEqLyPfP~~~l~~~l~~y~~~~e~vW~QEEp~N~Gaw~~~~~~ 862 (906)
T COG0567 799 YYDLLEQR---EKDGRDDVAIVRIEQLYPFPAKALAALLAKYPNVKEFVWCQEEPKNQGAWYYIQPH 862 (906)
T ss_pred HHHHHHHH---hhcCCcceeEEeeecccCchHHHHHHHHHhccccccccccccCCCccccHHHHHHH
Confidence 88766654 3344 489999999999999999999999873 355555555555544444433
No 58
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=98.55 E-value=7.4e-07 Score=87.84 Aligned_cols=267 Identities=19% Similarity=0.232 Sum_probs=176.7
Q ss_pred cccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchh-------------HHHHh-CCCc---eeechhhHHHH
Q 020510 34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKG-------------LLEKY-GPER---VLDTPITEAGF 96 (325)
Q Consensus 34 ~~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~-------------~~~~~-gp~R---~i~~GIaE~~~ 96 (325)
+.++.+..|=+-++..++....+|-+-++|+++ |+|.-.+. |-.-- +... +-|...+|.+.
T Consensus 561 G~kiDWaTAEAlA~GSll~qG~nVRiSGqDVGR--GTFshRHAM~VdQ~Td~~~IPLN~m~~~qkg~LEvans~LSEEAv 638 (913)
T KOG0451|consen 561 GVKIDWATAEALAIGSLLYQGHNVRISGQDVGR--GTFSHRHAMLVDQQTDEMFIPLNSMEGGQKGKLEVANSILSEEAV 638 (913)
T ss_pred CCccchHHHHHHHHHHHHhccCceeeeccccCc--ccccccceeeeeccccceeeeccccCCCcCCeeEeccccccHhhh
Confidence 357788888888999999999999999999986 55532111 10000 1122 33567899999
Q ss_pred HHHHHHHhccC--CeeEEecccccHHH---HHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCCcchH-HHHHH
Q 020510 97 TGIGVGAAYYG--LKPVVEFMTFNFSM---QAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHC-YAAWY 170 (325)
Q Consensus 97 vg~A~GlA~~G--~~p~v~~~~~~f~~---ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tHs~~-~~a~~ 170 (325)
+|+-.|||... ..++++.++.+|.+ -.+|.+.. -+..+|+. ...+++..+.|+. |-|+.||.| +|.++
T Consensus 639 LGFEyGmsienP~~L~iWEAQFGDFfNGAQIIiDTFi~-sgE~KWl~----ssglvmLLPHGyD-GAgpeHSSCRiERFL 712 (913)
T KOG0451|consen 639 LGFEYGMSIENPNNLIIWEAQFGDFFNGAQIIIDTFIV-SGETKWLE----SSGLVMLLPHGYD-GAGPEHSSCRIERFL 712 (913)
T ss_pred hhhhcccccCCcccceeehhhhcccccCceEEEeeeec-ccchhhhh----hCCeEEEccCCcC-CCCCccchhhHHHHH
Confidence 99999999995 67899988887754 33444433 34556763 4567777776653 457889764 45555
Q ss_pred hc-----------CCCcEEEeeCCHHHHHHHHHHh-Hh-CCCcEEEEeCccccCcccCcc--cc-ccCCCccccCCceEE
Q 020510 171 AS-----------VPGLKVLSPYSSEDARGLLKAA-IR-DPDPVVFLENELLYGESFPVS--AE-VLDSSFCLPIGKAKI 234 (325)
Q Consensus 171 ~~-----------iP~~~V~~P~d~~e~~~~l~~a-~~-~~~Pv~ir~~~~l~~~~~p~~--~~-~~~~~~~~~~gk~~v 234 (325)
.- --||.|+-|.+|.+++.+++.- .+ ...|.++..++.+.+-+-... .+ -|...|.-.+|.-..
T Consensus 713 QlCDS~E~~vDGd~VNm~vvnPTTpAQYfHlLRRQ~vrNfRKPLiVv~PK~LLRlPaA~ST~~ef~PGTtf~nVigd~~~ 792 (913)
T KOG0451|consen 713 QLCDSKETSVDGDSVNMHVVNPTTPAQYFHLLRRQLVRNFRKPLIVVAPKTLLRLPAATSTHEEFQPGTTFHNVIGDTIA 792 (913)
T ss_pred HHhccccccCCCcceeEEEeCCCCHHHHHHHHHHHHHHhccCceEEechHHHhhCcchhhhHhhcCCCcccccccccccc
Confidence 32 2489999999999999999743 33 578999987776543211100 00 012222222332211
Q ss_pred eeeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCCe----EEEEecCCCCCCHHHHHH
Q 020510 235 EREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNR----LVTVEEGFPQHGVGAEIW 310 (325)
Q Consensus 235 l~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~----vvvvEe~~~~GGlg~~v~ 310 (325)
-.+.-+-+|+++|.-.....++.+.+..+. .+.++.+.+|-|||.+.|...++|++. |+.=||+. +-|-.+.|.
T Consensus 793 ~p~kvkkvifcSGKH~y~l~k~Re~rgakd-~~AI~RvE~LCPFPi~~LQa~l~kY~~vqdfvWSQEEpr-NmGaWsFVr 870 (913)
T KOG0451|consen 793 KPEKVKKVIFCSGKHYYTLAKEREKRGAKD-TVAILRVESLCPFPIQELQAQLAKYGNVQDFVWSQEEPR-NMGAWSFVR 870 (913)
T ss_pred ChhHheEEEEecCcchhhHHHHHHhccccc-ceeeEehhhcCCCchHHHHHHHHhcCChhhhcccccccc-cCCcceeec
Confidence 112235688899988887777766654332 489999999999999999999998863 56677766 555555554
No 59
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=98.53 E-value=5.1e-07 Score=81.94 Aligned_cols=111 Identities=19% Similarity=0.143 Sum_probs=74.6
Q ss_pred eeechhhHHHHHHHHHHHhccCCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC--CCCCCCCCCc-
Q 020510 86 VLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN--GAAAGVGAQH- 162 (325)
Q Consensus 86 ~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~--G~~~g~G~tH- 162 (325)
.+....+|..+++++.|+|.+|.|.++.|. +..+..+.|.|.. ++. ..+|++++... |...| +++|
T Consensus 38 ~~~~~E~E~~A~~~~~GAs~aG~ra~t~ts-~~Gl~lm~e~l~~-a~~--------~~~P~V~~~~~R~g~~~g-~~~~~ 106 (230)
T PF01855_consen 38 KVVQAESEHAAMEAAIGASAAGARAMTATS-GPGLNLMAEPLYW-AAG--------TELPIVIVVVQRAGPSPG-LSTQP 106 (230)
T ss_dssp EEEE-SSHHHHHHHHHHHHHTT--EEEEEE-CCHHHHHCCCHHH-HHH--------TT--EEEEEEEB---SSS-B--SB
T ss_pred EEEEecchHHHHHHHHHHHhcCCceEEeec-CCcccccHhHHHH-HHH--------cCCCEEEEEEECCCCCCC-CcCcC
Confidence 455579999999999999999999999887 6678888898865 443 57898887642 33222 2333
Q ss_pred chHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEeCcc
Q 020510 163 SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENEL 208 (325)
Q Consensus 163 s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~ir~~~~ 208 (325)
.|.+.-..+ .-++.|+.|+|++|+.++...|++ ...||+++.+..
T Consensus 107 ~q~D~~~~~-d~~~~vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~ 155 (230)
T PF01855_consen 107 EQDDLMAAR-DSGWIVLAPSSPQEAYDMTLIAFNLAEKYQTPVIVLFDGF 155 (230)
T ss_dssp -SHHHHHTT-TSS-EEEE--SHHHHHHHHHHHHHHHHHHTSEEEEEEECC
T ss_pred ChhHHHHHH-hcCeEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechh
Confidence 344433333 568889999999999999998887 478999986543
No 60
>PF03894 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; InterPro: IPR005593 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=97.75 E-value=0.0017 Score=56.08 Aligned_cols=151 Identities=11% Similarity=0.130 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHhcCC-cEEEEecCCCCccCccccchhHHHHh-------------CCCceeechhhHHHHHHHHHHHhcc
Q 020510 41 EALNSALDEEMSADP-KVFLMGEEVGEYQGAYKISKGLLEKY-------------GPERVLDTPITEAGFTGIGVGAAYY 106 (325)
Q Consensus 41 ~a~~~~L~~l~~~d~-~iv~l~~D~~~~~g~~~~~~~~~~~~-------------gp~R~i~~GIaE~~~vg~A~GlA~~ 106 (325)
.++++-|.++++.|+ +.-+.++|...|.....+.+...+++ .+++-+..-.+|....|...|..+.
T Consensus 2 ~~lg~~l~dv~~~N~~nfRvf~PDEt~SNrL~~v~e~t~r~w~~~~~~~~~~~~~~~~G~V~e~LSEh~c~G~leGY~Lt 81 (179)
T PF03894_consen 2 RVLGKYLRDVIKLNPRNFRVFGPDETASNRLNAVFEVTNRQWMARILPPDDDEHLAPGGRVMEVLSEHQCQGWLEGYLLT 81 (179)
T ss_dssp HHHHHHHHHHHHHSTTTEEEEESS-TTTTT-GGGGGT--EE--S----TTT-TTEESS-SEEE-S-HHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhCCCcceeECCCcchhhchHHHHHhcccccccccCCCcchhhcccCCeeeeecCHHHHHHHHHHHHhc
Confidence 467788888888765 68899999987765433322211111 0223344459999999999999999
Q ss_pred CCeeEEecccccH--HHHHHHHHHHH---HhhccccCCCCccCC---EEEEeCCCCC-CCCCCCcch-HH-HHHHhcCC-
Q 020510 107 GLKPVVEFMTFNF--SMQAIDHIINS---AAKSNYMSSGQISVP---IVFRGPNGAA-AGVGAQHSH-CY-AAWYASVP- 174 (325)
Q Consensus 107 G~~p~v~~~~~~f--~~ra~dqi~~~---~a~~~~~~~~~~~~p---vv~~~~~G~~-~g~G~tHs~-~~-~a~~~~iP- 174 (325)
|-+-++.+|-+|. +.-++.|-.-. .....|+ .+.| +++. +..-- ..+|-||+. .+ +.++...|
T Consensus 82 Grhglf~sYEAF~~ivdsM~~Qh~Kwl~~~~~~~wR----~~~~SlN~l~T-S~~wrQdhNG~SHQdPgfi~~~~~k~~~ 156 (179)
T PF03894_consen 82 GRHGLFASYEAFAHIVDSMLNQHAKWLRHARELPWR----APIPSLNYLLT-SHVWRQDHNGFSHQDPGFIDHVLNKKPD 156 (179)
T ss_dssp T-EEEEEEEGGGGGGGHHHHHHHHHHHHHHHH-TTS-------B-EEEEEE-S-CCG-TTT-GGG---THHHHHHCC--T
T ss_pred CCcccccccchhHHHHHHHHHHHHHHHHHHHhCcCC----CCCcceeEEee-ccceecCCCCcccCCChHHHHHHhcCcc
Confidence 9999999988875 22223332111 1222343 3444 3332 22222 348899933 22 36666655
Q ss_pred CcEEEeeCCHHHHHHHHHHhHh
Q 020510 175 GLKVLSPYSSEDARGLLKAAIR 196 (325)
Q Consensus 175 ~~~V~~P~d~~e~~~~l~~a~~ 196 (325)
-+.||.|.|..-+..+++.+++
T Consensus 157 ~~RvylPpDANtlLav~~~clr 178 (179)
T PF03894_consen 157 VVRVYLPPDANTLLAVMDHCLR 178 (179)
T ss_dssp -EEEEE-SSHHHHHHHHHHHHH
T ss_pred cceeecCCcHhHHHHHHHHHhc
Confidence 6789999999999999998876
No 61
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=97.62 E-value=0.0051 Score=52.16 Aligned_cols=110 Identities=17% Similarity=0.157 Sum_probs=75.4
Q ss_pred CCceeechhhHHHHHHHHHHHhccCCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCC--C
Q 020510 83 PERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVG--A 160 (325)
Q Consensus 83 p~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G--~ 160 (325)
.-++|.+- .|++++.+|.|.++.|.++.+.+..+ .+..+.+.+.+... ...|++++..+......+ .
T Consensus 41 ~i~~i~~~-~E~~A~~~A~g~~r~~~~v~~~~~gp-G~~n~~~~l~~a~~---------~~~P~v~i~g~~~~~~~~~~~ 109 (160)
T cd07034 41 GGVVVQAE-SEHAAAEAAIGASAAGARAMTATSGP-GLNLMAEALYLAAG---------AELPLVIVVAQRPGPSTGLPK 109 (160)
T ss_pred CcEEEEeC-CHHHHHHHHHHHHhhCCcEEEeeCcc-hHHHHHHHHHHHHh---------CCCCEEEEEeeCCCCCCCCCC
Confidence 35788875 99999999999999988865666644 56668888765322 369988876532222222 1
Q ss_pred CcchHHH--HHHhcCCCcEEEeeCCHHHHHHHHHHhHhC----CCcEEEEe
Q 020510 161 QHSHCYA--AWYASVPGLKVLSPYSSEDARGLLKAAIRD----PDPVVFLE 205 (325)
Q Consensus 161 tHs~~~~--a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~----~~Pv~ir~ 205 (325)
.+++... .+++. -..++.+.+++|+..+++.|++. ++||+++.
T Consensus 110 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 110 PDQSDLMAARYGGH--PWPVLAPSSVQEAFDLALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred cCcHHHHHHHhCCC--CEEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 1224333 34433 56788899999999999888872 57999874
No 62
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=97.20 E-value=0.0054 Score=51.71 Aligned_cols=136 Identities=18% Similarity=0.124 Sum_probs=83.6
Q ss_pred cCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCC-eeEEecccccHHHHHHHHHHHHH
Q 020510 53 ADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGL-KPVVEFMTFNFSMQAIDHIINSA 131 (325)
Q Consensus 53 ~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~-~p~v~~~~~~f~~ra~dqi~~~~ 131 (325)
.+-+.++..++.. ...+.+.+. +- .=|++.+ ..|.+++.+|.|.++.+. .+++.+.....+..+...|.+..
T Consensus 10 ~Gv~~vfg~pg~~----~~~l~~~~~-~~-~~~~i~~-~~E~~A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~l~~A~ 82 (155)
T cd07035 10 EGVDHVFGVPGGA----ILPLLDALA-RS-GIRYILV-RHEQGAVGMADGYARATGKPGVVLVTSGPGLTNAVTGLANAY 82 (155)
T ss_pred cCCCEEEECCCCc----hHHHHHHhc-cC-CCEEEEe-CCHHHHHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHHHHHHH
Confidence 3556666665422 112223333 11 2466665 799999999999999954 44444443455666777776532
Q ss_pred hhccccCCCCccCCEEEEeCCCCCCCCC-CCcchHH-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHhC-----CCcEEEE
Q 020510 132 AKSNYMSSGQISVPIVFRGPNGAAAGVG-AQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFL 204 (325)
Q Consensus 132 a~~~~~~~~~~~~pvv~~~~~G~~~g~G-~tHs~~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-----~~Pv~ir 204 (325)
. .+.|++++..+-.....+ .+|+..+ ..+++.+-.. .+...+++++...+..|++. ++||||.
T Consensus 83 ~---------~~~Pll~i~~~~~~~~~~~~~~q~~d~~~~~~~~~~~-~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l~ 152 (155)
T cd07035 83 L---------DSIPLLVITGQRPTAGEGRGAFQEIDQVALFRPITKW-AYRVTSPEEIPEALRRAFRIALSGRPGPVALD 152 (155)
T ss_pred h---------hCCCEEEEeCCCccccccCCcccccCHHHHHHHHhce-EEEcCCHHHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 2 589998886542222222 2232223 3677777543 67778899999988888872 5799986
Q ss_pred e
Q 020510 205 E 205 (325)
Q Consensus 205 ~ 205 (325)
.
T Consensus 153 i 153 (155)
T cd07035 153 L 153 (155)
T ss_pred e
Confidence 4
No 63
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=96.74 E-value=0.036 Score=47.75 Aligned_cols=153 Identities=21% Similarity=0.153 Sum_probs=87.9
Q ss_pred cHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEecccc
Q 020510 38 MVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTF 117 (325)
Q Consensus 38 s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~~~ 117 (325)
+..+++.+.|.+ .+-+.|+--++.. ...+.+.+.+.- -=|++.+ ..|++++.+|.|.|+.+-+|-+++..+
T Consensus 2 t~~~~l~~~L~~---~Gv~~vfgvpG~~----~~~l~~al~~~~-~i~~i~~-~~E~~A~~~A~g~ar~~g~~~v~~~~~ 72 (172)
T PF02776_consen 2 TGAEALAEALKA---NGVTHVFGVPGSG----NLPLLDALEKSP-GIRFIPV-RHEQGAAFMADGYARATGRPGVVIVTS 72 (172)
T ss_dssp EHHHHHHHHHHH---TT-SEEEEE--GG----GHHHHHHHHHTT-TSEEEE--SSHHHHHHHHHHHHHHHSSEEEEEEET
T ss_pred cHHHHHHHHHHH---CCCeEEEEEeChh----HhHHHHHhhhhc-ceeeecc-cCcchhHHHHHHHHHhhccceEEEeec
Confidence 455666666654 2444455444321 223334555443 2478774 999999999999998865554443323
Q ss_pred -cHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC-CCC-CCCCCCcc-hHHHHHHhcCCCcEEEeeCCHHHHHHHHHH
Q 020510 118 -NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAA-AGVGAQHS-HCYAAWYASVPGLKVLSPYSSEDARGLLKA 193 (325)
Q Consensus 118 -~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~-~g~G~tHs-~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~ 193 (325)
..+.-+..-+.+ ++. .+.|++++..+ +.. .+.+..|. .....+++.+-. ..+.+.++.++...++.
T Consensus 73 GpG~~n~~~~l~~--A~~-------~~~Pvl~i~g~~~~~~~~~~~~q~~~d~~~~~~~~~k-~~~~v~~~~~~~~~~~~ 142 (172)
T PF02776_consen 73 GPGATNALTGLAN--AYA-------DRIPVLVITGQRPSAGEGRGAFQQEIDQQSLFRPVTK-WSYRVTSPDDLPEALDR 142 (172)
T ss_dssp THHHHTTHHHHHH--HHH-------TT-EEEEEEEESSGGGTTTTSTTSSTHHHHHHGGGSS-EEEEECSGGGHHHHHHH
T ss_pred ccchHHHHHHHhh--ccc-------ceeeEEEEecccchhhhcccccccchhhcchhccccc-hhcccCCHHHHHHHHHH
Confidence 233333343433 332 57898887643 222 23455552 233488888754 46777778777777776
Q ss_pred hHh-----CCCcEEEEeCccc
Q 020510 194 AIR-----DPDPVVFLENELL 209 (325)
Q Consensus 194 a~~-----~~~Pv~ir~~~~l 209 (325)
|++ .++|++|..+..+
T Consensus 143 A~~~a~~~~~gPv~l~ip~dv 163 (172)
T PF02776_consen 143 AFRAATSGRPGPVYLEIPQDV 163 (172)
T ss_dssp HHHHHHHCSTSEEEEEEEHHH
T ss_pred HHHHhccCCCccEEEEcChhH
Confidence 665 4789999876554
No 64
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=96.26 E-value=0.047 Score=52.97 Aligned_cols=124 Identities=14% Similarity=0.194 Sum_probs=77.2
Q ss_pred HHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeeEEecccccHHHHHHHHHHHHHh-hccccCCCCccCCEEEEeC-CC
Q 020510 77 LLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAA-KSNYMSSGQISVPIVFRGP-NG 153 (325)
Q Consensus 77 ~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~~~~~~f~~ra~dqi~~~~a-~~~~~~~~~~~~pvv~~~~-~G 153 (325)
+.++..+.|+|-+ -+|..++++|+|+.+. |.+|.+.++.|.+ .-+...+. +++ .. .-++|+++... .|
T Consensus 20 ~~~~~~~~~~i~~-~~E~~av~iaaG~~latG~~~~v~mQnSGl-Gn~vN~l~-SL~~~~------~y~iP~l~~i~~RG 90 (361)
T TIGR03297 20 ITDNNRDLRHVIA-ANEGAAVGLAAGAYLATGKRAAVYMQNSGL-GNAVNPLT-SLADTE------VYDIPLLLIVGWRG 90 (361)
T ss_pred HHhcCCCceEEec-CCchHHHHHHHHHHHhcCCccEEEEecCch-hhhhhHHH-hhcccc------ccCcCeeEEEecCC
Confidence 4434523466664 6899999999999999 9999999997764 33555543 231 01 13688777655 36
Q ss_pred CCC-CCCCCcc-h-HH-HHHHhcCCCcEEEe-eCCHHHHHHHHHH----hHhCCCcEEEEeCcccc
Q 020510 154 AAA-GVGAQHS-H-CY-AAWYASVPGLKVLS-PYSSEDARGLLKA----AIRDPDPVVFLENELLY 210 (325)
Q Consensus 154 ~~~-g~G~tHs-~-~~-~a~~~~iP~~~V~~-P~d~~e~~~~l~~----a~~~~~Pv~ir~~~~l~ 210 (325)
..+ .+-++|. | .. ..+|..+ ++..+. |.+.+|....+.. +++.+.|+.+...+..+
T Consensus 91 ~~g~~depqh~~~G~~t~~lL~~~-~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~p~a~l~~~~~~ 155 (361)
T TIGR03297 91 EPGVHDEPQHVKQGRITLSLLDAL-EIPWEVLSTDNDEALAQIERALAHALATSRPYALVVRKGTF 155 (361)
T ss_pred CCCCCCCchhhHHhHHHHHHHHHc-CCCEEECCCChHHHHHHHHHHHHHHHHHCCCEEEEEccccc
Confidence 544 3567772 2 22 4777764 333333 4566666555554 44568899998766543
No 65
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=96.09 E-value=0.59 Score=47.55 Aligned_cols=151 Identities=16% Similarity=0.092 Sum_probs=86.5
Q ss_pred cccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCC--ceeechhhHHHHHHHHHHHhccCCeeEEe
Q 020510 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPE--RVLDTPITEAGFTGIGVGAAYYGLKPVVE 113 (325)
Q Consensus 36 ~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~--R~i~~GIaE~~~vg~A~GlA~~G~~p~v~ 113 (325)
.++..+++.+.|.+ .+-+.++..+... . ..|.+.+ .+ ||+.+ -.|++++.+|.|.|+..-+|-++
T Consensus 11 ~~~~a~~l~~~L~~---~GV~~vFgiPG~~----~----~~l~dal-~~~i~~i~~-~hE~~A~~~Adgyar~tg~~~v~ 77 (530)
T PRK07092 11 MTTVRDATIDLLRR---FGITTVFGNPGST----E----LPFLRDF-PDDFRYVLG-LQEAVVVGMADGYAQATGNAAFV 77 (530)
T ss_pred cCcHHHHHHHHHHH---cCCCEEEeCCCCc----c----hHHHHHH-hhcCCEEEE-ccHHHHHHHHHHHHHHhCCceEE
Confidence 34555666666554 3445555443111 1 2344444 22 77764 89999999999999874444443
Q ss_pred -cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCCCcchHH-HHHHhcCCCcEEEeeCCHHHHHH
Q 020510 114 -FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQHSHCY-AAWYASVPGLKVLSPYSSEDARG 189 (325)
Q Consensus 114 -~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~tHs~~~-~a~~~~iP~~~V~~P~d~~e~~~ 189 (325)
+.....+.-++--|.+ |+ ..+.||+++....... +.+..++..+ ..+++.+-..... ..+++++..
T Consensus 78 ~vt~gpG~~N~~~gia~--A~-------~~~~Pvl~i~g~~~~~~~~~~~~~~~~d~~~l~~~~tk~~~~-v~~~~~~~~ 147 (530)
T PRK07092 78 NLHSAAGVGNAMGNLFT--AF-------KNHTPLVITAGQQARSILPFEPFLAAVQAAELPKPYVKWSIE-PARAEDVPA 147 (530)
T ss_pred EeccCchHHHHHHHHHH--Hh-------hcCCCEEEEecCCcccccCccchhcccCHHHhhcccccceee-cCCHHHHHH
Confidence 2222333344444543 22 2589998876432222 2333221123 4788888664443 477888887
Q ss_pred HHHHhHh----C-CCcEEEEeCccc
Q 020510 190 LLKAAIR----D-PDPVVFLENELL 209 (325)
Q Consensus 190 ~l~~a~~----~-~~Pv~ir~~~~l 209 (325)
.++.|++ . .+||||-.+..+
T Consensus 148 ~i~~A~~~A~~~~~GPv~l~iP~d~ 172 (530)
T PRK07092 148 AIARAYHIAMQPPRGPVFVSIPYDD 172 (530)
T ss_pred HHHHHHHHHhcCCCCcEEEEccHHH
Confidence 7777776 2 479999876553
No 66
>PRK08322 acetolactate synthase; Reviewed
Probab=96.08 E-value=0.4 Score=48.87 Aligned_cols=114 Identities=14% Similarity=0.058 Sum_probs=73.1
Q ss_pred ceeechhhHHHHHHHHHHHhcc-CCeeEEe-cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCCc
Q 020510 85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVE-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQH 162 (325)
Q Consensus 85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~-~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tH 162 (325)
|++.+ ..|+++..+|.|.|+. |...++. +..+. +.-++--+.+ |+ ..++|++++..+-.....+..+
T Consensus 40 ~~i~~-~hE~~A~~~A~gyar~tg~~gv~~~t~GpG-~~N~~~~i~~--A~-------~~~~Pll~i~g~~~~~~~~~~~ 108 (547)
T PRK08322 40 KLILT-RHEQGAAFMAATYGRLTGKAGVCLSTLGPG-ATNLVTGVAY--AQ-------LGGMPMVAITGQKPIKRSKQGS 108 (547)
T ss_pred cEEEe-ccHHHHHHHHHHHHHhhCCCEEEEECCCcc-HhHHHHHHHH--Hh-------hcCCCEEEEeccccccccCCCc
Confidence 67765 8999999999999988 5443333 43343 3434454543 32 2689999886432222222222
Q ss_pred chH--HHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhC-----CCcEEEEeCcccc
Q 020510 163 SHC--YAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELLY 210 (325)
Q Consensus 163 s~~--~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-----~~Pv~ir~~~~l~ 210 (325)
.|. ..++++.+-. ..+...+++++..+++.|++. ++|||+-.+..+.
T Consensus 109 ~q~~d~~~~~~~~tk-~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv~ 162 (547)
T PRK08322 109 FQIVDVVAMMAPLTK-WTRQIVSPDNIPEVVREAFRLAEEERPGAVHLELPEDIA 162 (547)
T ss_pred cccccHHHHhhhhee-EEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhhh
Confidence 243 2488888764 466677888888888877772 5899998776543
No 67
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=95.83 E-value=0.19 Score=42.86 Aligned_cols=112 Identities=21% Similarity=0.262 Sum_probs=67.2
Q ss_pred ceeechhhHHHHHHHHHHHhccCCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC-CCCCCCCCCcc
Q 020510 85 RVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAGVGAQHS 163 (325)
Q Consensus 85 R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~~g~G~tHs 163 (325)
|||- .-.|..++++|+|.++.|.+|.+++..+... -+..-+.... +. ..+|++++..+ |......+.|.
T Consensus 36 ~~i~-~~~ee~aa~~aAg~~~~~~~~~v~~~~sG~g-n~~~~l~~a~-~~-------~~~Pvl~i~g~rg~~~~~~~~q~ 105 (157)
T TIGR03845 36 RHIP-LTREEEGVGICAGAYLAGKKPAILMQSSGLG-NSINALASLN-KT-------YGIPLPILASWRGVYKEKIPAQI 105 (157)
T ss_pred cEEe-cCChHHHHHHHHHHHHhcCCcEEEEeCCcHH-HHHHHHHHHH-Hc-------CCCCEEEEEeccCCCCCCCcccc
Confidence 5543 4688888899999999999999988866543 3555554322 11 57998887643 43221111111
Q ss_pred --hHH-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEeCcc
Q 020510 164 --HCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENEL 208 (325)
Q Consensus 164 --~~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~ir~~~~ 208 (325)
... +..|..+ ++......+++++ ..++.|++ .++|+++...+.
T Consensus 106 ~~g~~~~~~l~~~-~i~~~~i~~~e~~-~~i~~A~~~a~~~~gPv~il~~~~ 155 (157)
T TIGR03845 106 PMGRATPKLLDTL-GIPYTIPREPEEA-KLIEKAISDAYENSRPVAALLDPK 155 (157)
T ss_pred chhhhhHHHHHHc-CCCeEEeCCHHHH-HHHHHHHHHHHhCCCCEEEEEeCC
Confidence 111 2333332 3335666778888 77777665 468999976543
No 68
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=95.57 E-value=0.86 Score=46.90 Aligned_cols=113 Identities=13% Similarity=0.132 Sum_probs=70.3
Q ss_pred ceeechhhHHHHHHHHHHHhcc-CCeeEE-ecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCC-CC
Q 020510 85 RVLDTPITEAGFTGIGVGAAYY-GLKPVV-EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVG-AQ 161 (325)
Q Consensus 85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~v-~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G-~t 161 (325)
+||.+ -.|++++.+|.|.|+. |.-.++ .+..+.+ .-++--|.+ |+. .+.||+++...-.....+ ..
T Consensus 41 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~-~N~~~gla~--A~~-------~~~Pvl~I~g~~~~~~~~~~~ 109 (579)
T TIGR03457 41 RFIPV-VHEQGAGHMADGFARVTGRMSMVIGQNGPGV-TNCVTAIAA--AYW-------AHTPVVIVTPEAGTKTIGLGG 109 (579)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCchH-HHHHHHHHH--Hhh-------cCCCEEEEeCCCccccCCCCC
Confidence 67775 8999999999999977 654444 3444443 334444543 222 589998886432222211 22
Q ss_pred cchH-H-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEeCcccc
Q 020510 162 HSHC-Y-AAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLY 210 (325)
Q Consensus 162 Hs~~-~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~ir~~~~l~ 210 (325)
| |. + ..+++.+-. -.....++.++...++.|++ .++||||-.++.+.
T Consensus 110 ~-Q~~d~~~l~~~vtk-~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv~ 162 (579)
T TIGR03457 110 F-QEADQLPMFQEFTK-YQGHVRHPSRMAEVLNRCFERAWREMGPAQLNIPRDYF 162 (579)
T ss_pred C-cccchhhhhhccee-EEEecCCHHHHHHHHHHHHHHHhcCCCCEEEEeCcchh
Confidence 4 32 2 378887754 34445677777777776665 35899998776643
No 69
>PRK08611 pyruvate oxidase; Provisional
Probab=95.55 E-value=1.3 Score=45.57 Aligned_cols=155 Identities=14% Similarity=0.055 Sum_probs=86.3
Q ss_pred ccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeeEE-ec
Q 020510 37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVV-EF 114 (325)
Q Consensus 37 ~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~-G~~p~v-~~ 114 (325)
++..+++.+.|.+ .+-+.|+..+... ...+.+.+.+.-..=||+. ...|++++.+|.|.|+. |...++ .+
T Consensus 4 ~~~~~~l~~~L~~---~GV~~vFgipG~~----~~~l~dal~~~~~~i~~i~-~rhE~~A~~mAdgyar~tg~~gv~~~t 75 (576)
T PRK08611 4 IKAGEALVKLLQD---WGIDHVYGIPGDS----IDAVVDALRKEQDKIKFIQ-VRHEEVAALAAAAYAKLTGKIGVCLSI 75 (576)
T ss_pred CcHHHHHHHHHHH---cCCCEEEecCCcc----hHHHHHHHHhcCCCCeEEE-eCcHHHHHHHHHHHHHHhCCceEEEEC
Confidence 4455555555544 2344444433111 1222344432111136777 48999999999999977 533333 34
Q ss_pred ccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCCCcchHHHHHHhcCCCcEEEeeCCHHHHHHHHH
Q 020510 115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLK 192 (325)
Q Consensus 115 ~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~ 192 (325)
..+. +.-++--+.+ |+. .++|++++...-... +.+..|......+++.+--. .+...+++++...+.
T Consensus 76 ~GPG-~~N~l~gla~--A~~-------~~~Pvl~ItG~~~~~~~~~~~~q~~d~~~l~~~itk~-~~~v~~~~~~~~~l~ 144 (576)
T PRK08611 76 GGPG-AIHLLNGLYD--AKM-------DHVPVLALAGQVTSDLLGTDFFQEVNLEKMFEDVAVY-NHQIMSAENLPEIVN 144 (576)
T ss_pred CCCc-HHHHHHHHHH--Hhh-------cCCCEEEEecCCcccccCCCCccccCHHHHhhcccce-eEEeCCHHHHHHHHH
Confidence 4443 3334454543 332 689998886432222 23332211234888887543 445667878877777
Q ss_pred HhHh----CCCcEEEEeCcccc
Q 020510 193 AAIR----DPDPVVFLENELLY 210 (325)
Q Consensus 193 ~a~~----~~~Pv~ir~~~~l~ 210 (325)
.|++ .++||||-.+..+.
T Consensus 145 ~A~~~A~~~~GPV~l~iP~Dv~ 166 (576)
T PRK08611 145 QAIRTAYEKKGVAVLTIPDDLP 166 (576)
T ss_pred HHHHHHhhCCCCEEEEeChhhh
Confidence 6665 46899998776543
No 70
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=95.52 E-value=2.1 Score=43.76 Aligned_cols=114 Identities=18% Similarity=0.094 Sum_probs=70.6
Q ss_pred ceeechhhHHHHHHHHHHHhccCCee-EE-ecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCC--CCCCC
Q 020510 85 RVLDTPITEAGFTGIGVGAAYYGLKP-VV-EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGA 160 (325)
Q Consensus 85 R~i~~GIaE~~~vg~A~GlA~~G~~p-~v-~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~--~g~G~ 160 (325)
|++.+ ..|++++.+|.|.|+..-+| ++ .+..+ .+.-++--|.+ |+. .++||+++...... .+.+.
T Consensus 48 ~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~Gp-G~~N~~~gi~~--A~~-------~~~Pvl~i~g~~~~~~~~~~~ 116 (557)
T PRK08199 48 RVIVC-RQEGGAAMMAEAYGKLTGRPGICFVTRGP-GATNASIGVHT--AFQ-------DSTPMILFVGQVARDFREREA 116 (557)
T ss_pred cEEEe-ccHHHHHHHHHHHHHhcCCCEEEEeCCCc-cHHHHHHHHHH--Hhh-------cCCCEEEEecCCccccCCCCc
Confidence 56665 89999999999999885443 33 24434 34444454543 332 68999988643222 22333
Q ss_pred CcchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHh----C-CCcEEEEeCcccc
Q 020510 161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELLY 210 (325)
Q Consensus 161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~-~~Pv~ir~~~~l~ 210 (325)
.+.....++++.+-.. .+...+++++...++.|++ . ++||||..+..+.
T Consensus 117 ~q~~d~~~l~~~~tk~-~~~v~~~~~~~~~~~~A~~~A~~~~~GPV~l~iP~dl~ 170 (557)
T PRK08199 117 FQEIDYRRMFGPMAKW-VAEIDDAARIPELVSRAFHVATSGRPGPVVLALPEDVL 170 (557)
T ss_pred ccccCHHHhhhhhhce-eeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhHh
Confidence 2211223788877543 3344688888887777776 2 5899998776654
No 71
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=95.37 E-value=0.92 Score=38.82 Aligned_cols=110 Identities=15% Similarity=0.069 Sum_probs=69.5
Q ss_pred ceeechhhHHHHHHHHHHHhcc-CCeeEEe-cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCC-C
Q 020510 85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVE-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGA-Q 161 (325)
Q Consensus 85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~-~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~-t 161 (325)
||+. .-.|+++..+|-|.|+. |...++. +..+ .+.-++--+.+... .++|++++..+......|. .
T Consensus 40 ~~v~-~rhE~~A~~mA~gyar~tg~~~v~~~t~Gp-G~~n~~~~l~~A~~---------~~~Pvl~I~g~~~~~~~~~~~ 108 (164)
T cd07039 40 EFIQ-VRHEEAAAFAASAEAKLTGKLGVCLGSSGP-GAIHLLNGLYDAKR---------DRAPVLAIAGQVPTDELGTDY 108 (164)
T ss_pred eEEE-eCCHHHHHHHHHHHHHHhCCCEEEEECCCC-cHHHHHHHHHHHHh---------cCCCEEEEecCCcccccCCCC
Confidence 5665 48999999999999988 5433333 3333 34445555544222 5799998865433222221 2
Q ss_pred cch--HHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEeCc
Q 020510 162 HSH--CYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENE 207 (325)
Q Consensus 162 Hs~--~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~ir~~~ 207 (325)
+ | ....+++.+-. -...+.++.++...++.|++ .++||||-.+.
T Consensus 109 ~-q~~d~~~~~~~~tk-~~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~ 158 (164)
T cd07039 109 F-QEVDLLALFKDVAV-YNETVTSPEQLPELLDRAIRTAIAKRGVAVLILPG 158 (164)
T ss_pred C-cccCHHHHHHHhhc-EEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeCh
Confidence 3 3 22478888765 45566788888888877776 36899996553
No 72
>PRK08617 acetolactate synthase; Reviewed
Probab=95.26 E-value=1.5 Score=44.90 Aligned_cols=152 Identities=13% Similarity=0.060 Sum_probs=89.3
Q ss_pred ccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCe-eE-E
Q 020510 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLK-PV-V 112 (325)
Q Consensus 35 ~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~-p~-v 112 (325)
++++..+++.+.|.+ .+-+.|+..+... ...+.+.+.+. + =|+|.+ ..|+++..+|.|.|+..-+ .+ +
T Consensus 3 ~~~~~~~~l~~~L~~---~GV~~vFg~pG~~----~~~l~~al~~~-~-i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~ 72 (552)
T PRK08617 3 KKKYGADLVVDSLIN---QGVKYVFGIPGAK----IDRVFDALEDS-G-PELIVT-RHEQNAAFMAAAIGRLTGKPGVVL 72 (552)
T ss_pred ccccHHHHHHHHHHH---cCCCEEEeCCCcc----HHHHHHHHhhC-C-CCEEEe-ccHHHHHHHHHhHhhhcCCCEEEE
Confidence 445566666666654 3455555544211 12233444332 1 367775 8999999999999988443 33 3
Q ss_pred ecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCC--CCCCCCcchH-H-HHHHhcCCCcEEEeeCCHHHHH
Q 020510 113 EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGAQHSHC-Y-AAWYASVPGLKVLSPYSSEDAR 188 (325)
Q Consensus 113 ~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~--~g~G~tHs~~-~-~a~~~~iP~~~V~~P~d~~e~~ 188 (325)
.+..+.+++ ++--+.+ |+. .+.||+++...-.. .+.+. | |. + ..+++.+-- ..+...++.++.
T Consensus 73 vt~GpG~~N-~l~gl~~--A~~-------~~~PvlvisG~~~~~~~~~~~-~-q~~d~~~l~~~~tk-~~~~v~~~~~~~ 139 (552)
T PRK08617 73 VTSGPGVSN-LATGLVT--ATA-------EGDPVVAIGGQVKRADRLKRT-H-QSMDNVALFRPITK-YSAEVQDPDNLS 139 (552)
T ss_pred ECCCCcHhH-hHHHHHH--Hhh-------cCCCEEEEecCCcccccCCCC-c-cccchhhhhhhhcc-eEEEeCCHHHHH
Confidence 344444444 4444543 332 57899887542111 22232 4 32 2 478888754 455567888888
Q ss_pred HHHHHhHhC-----CCcEEEEeCccc
Q 020510 189 GLLKAAIRD-----PDPVVFLENELL 209 (325)
Q Consensus 189 ~~l~~a~~~-----~~Pv~ir~~~~l 209 (325)
..++.|++. ++||||-.+..+
T Consensus 140 ~~i~~A~~~a~~~~~GPV~l~iP~dv 165 (552)
T PRK08617 140 EVLANAFRAAESGRPGAAFVSLPQDV 165 (552)
T ss_pred HHHHHHHHHHccCCCCcEEEeChhhh
Confidence 888877762 479999876554
No 73
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=95.25 E-value=0.57 Score=48.35 Aligned_cols=114 Identities=12% Similarity=0.095 Sum_probs=70.3
Q ss_pred ceeechhhHHHHHHHHHHHhcc-CCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCCC
Q 020510 85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQ 161 (325)
Q Consensus 85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~t 161 (325)
|||.+ -.|++++.+|.|.|+. |+..++.+.+...+.-++--|.+ |+ ..+.||+++...-... +.+ .
T Consensus 45 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~gi~~--A~-------~~~~Pvl~I~g~~~~~~~~~~-~ 113 (588)
T PRK07525 45 RFIDV-AHEQNAGHMADGYTRVTGRMGMVIGQNGPGITNFVTAVAT--AY-------WAHTPVVLVTPQAGTKTIGQG-G 113 (588)
T ss_pred CEEEe-cCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHH--Hh-------hcCCCEEEEeCCCCcccCCCC-C
Confidence 66665 8999999999999987 65444433323333434444543 32 2589999886432221 222 2
Q ss_pred cch-HHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEeCcccc
Q 020510 162 HSH-CYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLY 210 (325)
Q Consensus 162 Hs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~ir~~~~l~ 210 (325)
++. ....+++.+-. -.+...+++++...++.|++ .++||||-.++.+.
T Consensus 114 ~q~~d~~~l~~~~tk-~~~~i~~~~~~~~~i~rA~~~A~~~~GPV~i~iP~Dv~ 166 (588)
T PRK07525 114 FQEAEQMPMFEDMTK-YQEEVRDPSRMAEVLNRVFDKAKRESGPAQINIPRDYF 166 (588)
T ss_pred Ccccchhhhhhhhee-EEEECCCHHHHHHHHHHHHHHHhcCCCCEEEEcChhHh
Confidence 312 22378887644 34555677777777776665 46899998776543
No 74
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=95.08 E-value=0.53 Score=39.99 Aligned_cols=144 Identities=15% Similarity=0.049 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEecccccHH
Q 020510 41 EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFS 120 (325)
Q Consensus 41 ~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~~~~f~ 120 (325)
+.+.+.|.+.+ . ..+|+. |.+.. .. .-+.....|.+|+..|--- ..++.|.|++.+-.+|++++. .+..
T Consensus 2 ~~~~~~l~~~l-~-d~~vv~--d~G~~----~~-~~~~~~~~~~~~~~~gsmG-~~lp~AiGa~~a~~~~Vv~i~-GDG~ 70 (157)
T cd02001 2 IAAIAEIIEAS-G-DTPIVS--TTGYA----SR-ELYDVQDRDGHFYMLGSMG-LAGSIGLGLALGLSRKVIVVD-GDGS 70 (157)
T ss_pred HHHHHHHHHhC-C-CCEEEe--CCCHh----HH-HHHHhhcCCCCEEeecchh-hHHHHHHHHHhcCCCcEEEEE-CchH
Confidence 45566676666 3 444443 44421 11 1133334478998632221 122377777765447787765 5432
Q ss_pred H-HHHHHHHHHHhhccccCCCCccCCEEEEeC-CCCCCCCC--CCcc-h-HHHHHHhcCCCcEEEeeCCHHHHHHHHHHh
Q 020510 121 M-QAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAGVG--AQHS-H-CYAAWYASVPGLKVLSPYSSEDARGLLKAA 194 (325)
Q Consensus 121 ~-ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G~~~g~G--~tHs-~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a 194 (325)
. .....+ ..++.. .++|++++.. ++.++-.+ .++. . ++..+...+ |+.-+...+++|+...++.+
T Consensus 71 f~m~~~el-~t~~~~-------~~~~i~~vV~nN~~~g~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a 141 (157)
T cd02001 71 LLMNPGVL-LTAGEF-------TPLNLILVVLDNRAYGSTGGQPTPSSNVNLEAWAAAC-GYLVLSAPLLGGLGSEFAGL 141 (157)
T ss_pred HHhcccHH-HHHHHh-------cCCCEEEEEEeCccccccCCcCCCCCCCCHHHHHHHC-CCceEEcCCHHHHHHHHHHH
Confidence 2 222222 222321 2477766542 33221111 1221 2 233555554 55566778999999999999
Q ss_pred HhCCCcEEEE
Q 020510 195 IRDPDPVVFL 204 (325)
Q Consensus 195 ~~~~~Pv~ir 204 (325)
++.++|++|.
T Consensus 142 ~~~~gp~vi~ 151 (157)
T cd02001 142 LATTGPTLLH 151 (157)
T ss_pred HhCCCCEEEE
Confidence 9988999884
No 75
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=94.94 E-value=0.53 Score=47.95 Aligned_cols=113 Identities=12% Similarity=0.032 Sum_probs=70.3
Q ss_pred ceeechhhHHHHHHHHHHHhcc-CCeeE-EecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCC--CCCCC
Q 020510 85 RVLDTPITEAGFTGIGVGAAYY-GLKPV-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGA 160 (325)
Q Consensus 85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~-v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~--~g~G~ 160 (325)
||+.+ ..|+++..+|-|.|+. |...+ +.+..+..++ ++--+.+ |+. .+.||+++...... .+.+.
T Consensus 38 ~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n-~l~gl~~--A~~-------~~~Pvl~I~G~~~~~~~~~~~ 106 (539)
T TIGR02418 38 ELIVV-RHEQNAAFMAQAVGRITGKPGVALVTSGPGCSN-LVTGLAT--ANS-------EGDPVVAIGGQVKRADLLKLT 106 (539)
T ss_pred CEEEe-CcHHHHHHHHHHHHHHhCCceEEEECCCCCHhH-HHHHHHH--Hhh-------cCCCEEEEeCCCcccccccCc
Confidence 67776 7999999999999977 54333 3344444433 4455543 332 57899888643222 12233
Q ss_pred CcchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHh----C-CCcEEEEeCccc
Q 020510 161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELL 209 (325)
Q Consensus 161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~-~~Pv~ir~~~~l 209 (325)
.|.....++++.+-. -.....++.++...++.|++ . ++||||..+..+
T Consensus 107 ~q~~d~~~~~~~~tk-~~~~i~~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~dv 159 (539)
T TIGR02418 107 HQSMDNVALFRPITK-YSAEVQDPDALSEVVANAFRAAESGKPGAAFVSLPQDV 159 (539)
T ss_pred ccccchhhhhhccee-eeeecCCHHHHHHHHHHHHHHHhcCCCCCEEEEcChhH
Confidence 221123488888764 34445678888777777765 2 479999877654
No 76
>PRK07586 hypothetical protein; Validated
Probab=94.80 E-value=0.82 Score=46.27 Aligned_cols=201 Identities=17% Similarity=0.037 Sum_probs=104.4
Q ss_pred ceeechhhHHHHHHHHHHHhcc-CCeeEEe-cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCC-C
Q 020510 85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVE-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGA-Q 161 (325)
Q Consensus 85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~-~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~-t 161 (325)
|||.+ -.|+++..+|.|.|+. |...++. +..+. +.-+.--+.+ |+ ..++||+++.........+. .
T Consensus 41 ~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG-~~N~~~gl~~--A~-------~~~~Pvl~i~G~~~~~~~~~~~ 109 (514)
T PRK07586 41 RCVLG-LFEGVATGAADGYARMAGKPAATLLHLGPG-LANGLANLHN--AR-------RARTPIVNIVGDHATYHRKYDA 109 (514)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHHCCCEEEEecccHH-HHHHHHHHHH--HH-------hcCCCEEEEecCCchhccCCCc
Confidence 67775 8999999999999988 5433332 44343 4444444443 32 26899998864322222221 1
Q ss_pred cch-HHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHh----C-CCcEEEEeCccccCcccCccccccCCCccccCCc----
Q 020510 162 HSH-CYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELLYGESFPVSAEVLDSSFCLPIGK---- 231 (325)
Q Consensus 162 Hs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~-~~Pv~ir~~~~l~~~~~p~~~~~~~~~~~~~~gk---- 231 (325)
|+. ....+++.+-- ..+...+++++...++.|++ . ++||||-.+..+.....+................
T Consensus 110 ~q~~d~~~~~~~vtk-~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~v~ 188 (514)
T PRK07586 110 PLTSDIEALARPVSG-WVRRSESAADVAADAAAAVAAARGAPGQVATLILPADVAWSEGGPPAPPPPAPAPAAVDPAAVE 188 (514)
T ss_pred ccccchhhhhccccc-eeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEeccchhccccccccccCCCCCCCCCCHHHHH
Confidence 212 22478877742 34556777877777777766 2 5899998776543221110000000000000000
Q ss_pred --eEEeeeC-CcEEEEEechhHHHHHHHHHHHHhc-CCcEEE--EE-----eeeccC-----CCHHHHHHHHhCCCeEEE
Q 020510 232 --AKIEREG-KDVTITAFSKIVGLSLKAAEILAKE-GISAEV--IN-----LRSIRP-----LDRSTINASVRKTNRLVT 295 (325)
Q Consensus 232 --~~vl~~G-~dv~Iia~G~~~~~a~~Aa~~L~~~-Gi~~~V--i~-----~~~l~P-----~d~~~l~~~~~~~~~vvv 295 (325)
.+.+.+- +-+.|++.|.....+.++..+|.++ |+-+-. +. -..+-| .-.....+.+++.+.|++
T Consensus 189 ~~~~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~l~~pV~t~~~~~~~~~gkg~~~~~~~~~~~~~~~~~~~~aDlvl~ 268 (514)
T PRK07586 189 AAAAALRSGEPTVLLLGGRALRERGLAAAARIAAATGARLLAETFPARMERGAGRPAVERLPYFAEQALAQLAGVRHLVL 268 (514)
T ss_pred HHHHHHHhcCCCEEEeCCcccchhHHHHHHHHHHHHCCCEEecccccccccCCCCCCcccccchHHHHHHHHhcCCEEEE
Confidence 1122232 3466666666556666666667654 665422 10 011111 112233456777777777
Q ss_pred Ee
Q 020510 296 VE 297 (325)
Q Consensus 296 vE 297 (325)
+-
T Consensus 269 vG 270 (514)
T PRK07586 269 VG 270 (514)
T ss_pred EC
Confidence 65
No 77
>PRK12474 hypothetical protein; Provisional
Probab=94.65 E-value=5.4 Score=40.43 Aligned_cols=155 Identities=14% Similarity=0.076 Sum_probs=87.4
Q ss_pred ccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeeEEe
Q 020510 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVVE 113 (325)
Q Consensus 35 ~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~ 113 (325)
++++..+.+.+.|.+ .+-+.|+--+ +. ....+.+.+.+ ...=|||.+ -.|+++..+|-|.|+. |..-++.
T Consensus 3 ~~~~~~~~l~~~L~~---~GV~~vFGvp--G~--~~~~l~dal~~-~~~i~~i~~-rhE~~A~~mAdgYaR~tg~~gv~~ 73 (518)
T PRK12474 3 QTMNGADSVVDTLLN---CGVEVCFANP--GT--SEMHFVAALDR-VPRMRPVLC-LFEGVVTGAADGYGRIAGKPAVTL 73 (518)
T ss_pred cCccHHHHHHHHHHH---CCCCEEEECC--Cc--chHHHHHHhhc-cCCceEEEe-cchHHHHHHHHHHHHHhCCCEEEE
Confidence 455556666666654 3444444332 11 01122223321 101277776 8999999999999987 5444433
Q ss_pred -cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCC-Ccch-HHHHHHhcCCCcEEEeeCCHHHHHHH
Q 020510 114 -FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGA-QHSH-CYAAWYASVPGLKVLSPYSSEDARGL 190 (325)
Q Consensus 114 -~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~-tHs~-~~~a~~~~iP~~~V~~P~d~~e~~~~ 190 (325)
+..+. ..-++--+.+ |+. -++||+++.........+. .|++ ...++++.+-- ..+...+++++..+
T Consensus 74 ~t~GpG-~~N~~~gl~~--A~~-------d~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~vtk-~~~~v~~~~~~~~~ 142 (518)
T PRK12474 74 LHLGPG-LANGLANLHN--ARR-------AASPIVNIVGDHAVEHLQYDAPLTSDIDGFARPVSR-WVHRSASAGAVDSD 142 (518)
T ss_pred Eccchh-HhHhHHHHHH--Hhh-------cCCCEEEEeccCchhhcCCCCccccCHHHhhhcccc-eeeecCCHHHHHHH
Confidence 44343 3334444433 322 5799888754322222121 2212 23478887653 34456889999988
Q ss_pred HHHhHhC-----CCcEEEEeCccc
Q 020510 191 LKAAIRD-----PDPVVFLENELL 209 (325)
Q Consensus 191 l~~a~~~-----~~Pv~ir~~~~l 209 (325)
++.|++. .+||||-.++.+
T Consensus 143 i~rA~~~A~~~~~GPV~l~iP~Dv 166 (518)
T PRK12474 143 VARAVQAAQSAPGGIATLIMPADV 166 (518)
T ss_pred HHHHHHHHhcCCCCcEEEEechhh
Confidence 8888862 489999877664
No 78
>PRK08266 hypothetical protein; Provisional
Probab=94.62 E-value=2.7 Score=42.83 Aligned_cols=153 Identities=18% Similarity=0.094 Sum_probs=87.8
Q ss_pred ccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeeEE-ec
Q 020510 37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVV-EF 114 (325)
Q Consensus 37 ~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~-G~~p~v-~~ 114 (325)
++..+++.+.|.++ +-+.|+..+... ...+.+.+.+.-..=|++.+ ..|++++.+|.|.|+. |...++ .+
T Consensus 4 ~~~~~~l~~~L~~~---Gv~~vFg~pG~~----~~~l~~al~~~~~~i~~v~~-~hE~~A~~~A~gyar~tg~~~v~~~t 75 (542)
T PRK08266 4 MTGGEAIVAGLVAH---GVDTVFGLPGAQ----LYWLFDALYKAGDRIRVIHT-RHEQAAGYMAFGYARSTGRPGVCSVV 75 (542)
T ss_pred CcHHHHHHHHHHHc---CCCEEEECCCcc----hHHHHHHHHhcCCCCeEEee-ccHHHHHHHHHHHHHHhCCCeEEEEC
Confidence 45566666666543 445555443211 12233444332111367775 8999999999999987 543333 34
Q ss_pred ccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCC--CCCC--CCcchH-H-HHHHhcCCCcEEEeeCCHHHHH
Q 020510 115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVG--AQHSHC-Y-AAWYASVPGLKVLSPYSSEDAR 188 (325)
Q Consensus 115 ~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~--~g~G--~tHs~~-~-~a~~~~iP~~~V~~P~d~~e~~ 188 (325)
..+.+ .-++--+.+ |+ ...+|++++...-.. .+.| ..| +. + ..+++.+-. ......+++++.
T Consensus 76 ~GpG~-~N~~~gi~~--A~-------~~~~Pvl~i~g~~~~~~~~~~~~~~~-~~~d~~~~~~~~tk-~~~~v~~~~~~~ 143 (542)
T PRK08266 76 PGPGV-LNAGAALLT--AY-------GCNSPVLCLTGQIPSALIGKGRGHLH-EMPDQLATLRSFTK-WAERIEHPSEAP 143 (542)
T ss_pred CCCcH-HHHHHHHHH--HH-------hhCCCEEEEecCCChhhccCCCCcce-ecccHhhHHhhhcc-eEEEeCCHHHHH
Confidence 44444 334455543 33 268999887643222 1222 234 32 3 478888754 355566777877
Q ss_pred HHHHHhHh-----CCCcEEEEeCccc
Q 020510 189 GLLKAAIR-----DPDPVVFLENELL 209 (325)
Q Consensus 189 ~~l~~a~~-----~~~Pv~ir~~~~l 209 (325)
..++.|++ ..+||++-.+..+
T Consensus 144 ~~l~~A~~~a~~~~~GPV~l~iP~dv 169 (542)
T PRK08266 144 ALVAEAFQQMLSGRPRPVALEMPWDV 169 (542)
T ss_pred HHHHHHHHHHhhCCCCcEEEEeCHhH
Confidence 77777776 2589999877554
No 79
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=94.58 E-value=2.9 Score=42.97 Aligned_cols=112 Identities=13% Similarity=0.048 Sum_probs=67.5
Q ss_pred ceeechhhHHHHHHHHHHHhccCCeeEEec--ccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCC
Q 020510 85 RVLDTPITEAGFTGIGVGAAYYGLKPVVEF--MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA 160 (325)
Q Consensus 85 R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~--~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~ 160 (325)
||+.+ -.|+++.-+|-|.|+..-+|-+++ ..+. ..-+.--|.+ |+. ..+||+++..+.... +.|.
T Consensus 43 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG-~~n~~~gi~~--A~~-------~~~Pvl~i~G~~~~~~~~~~~ 111 (574)
T PRK09124 43 EWMHT-RHEEVAAFAAGAEAQLTGELAVCAGSCGPG-NLHLINGLFD--CHR-------NHVPVLAIAAHIPSSEIGSGY 111 (574)
T ss_pred cEEEe-CcHHHHHHHHHHHHHhhCCcEEEEECCCCC-HHHHHHHHHH--Hhh-------cCCCEEEEecCCccccCCCCC
Confidence 56664 799999999999999844554443 3333 3334444433 322 589998886443332 2232
Q ss_pred Ccch--HHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEeCcccc
Q 020510 161 QHSH--CYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLY 210 (325)
Q Consensus 161 tHs~--~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~ir~~~~l~ 210 (325)
| | ....+++.+--. .....+++++...++.|++ .++|||+-.+..+.
T Consensus 112 -~-Q~~d~~~l~~~itk~-~~~v~~~~~~~~~i~~A~~~A~~~~gPV~l~iP~Dv~ 164 (574)
T PRK09124 112 -F-QETHPQELFRECSHY-CELVSNPEQLPRVLAIAMRKAILNRGVAVVVLPGDVA 164 (574)
T ss_pred -c-cccChhhhcccceee-eEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChhhh
Confidence 3 3 224788876432 3335677776666655554 46899998776543
No 80
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=94.57 E-value=2.3 Score=43.71 Aligned_cols=152 Identities=19% Similarity=0.124 Sum_probs=89.2
Q ss_pred cHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeeEEe-cc
Q 020510 38 MVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVVE-FM 115 (325)
Q Consensus 38 s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~-~~ 115 (325)
+..+++.+.|.+ .+-+.|+--+ +. ....+.+.|.+. + =|||.+ .-||++..+|.|.|+. |+.-+|- +.
T Consensus 3 ~ga~~lv~~L~~---~GV~~VFGiP--G~--~i~~~~dal~~~-~-i~~I~~-RHEq~Aa~mAdgyar~TGkpgV~~~ts 72 (550)
T COG0028 3 TGAEALVEALEA---NGVDTVFGIP--GG--SILPLYDALYDS-G-IRHILV-RHEQGAAFAADGYARATGKPGVCLVTS 72 (550)
T ss_pred cHHHHHHHHHHH---cCCcEEEeCC--Cc--cHHHHHHHHHhC-C-CcEEEe-ccHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 344555555543 3555555433 11 112233444443 2 377776 8999999999999988 5433333 33
Q ss_pred cccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCCcchHH--HHHHhcCCCcEEEeeCCHHHHHHHHHH
Q 020510 116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCY--AAWYASVPGLKVLSPYSSEDARGLLKA 193 (325)
Q Consensus 116 ~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tHs~~~--~a~~~~iP~~~V~~P~d~~e~~~~l~~ 193 (325)
.+.. .-+..-|.+ |++ -..|++++...-.+...|....|+. .++++.+-. ..+...+++|+-.+++.
T Consensus 73 GPGa-tN~~tgla~--A~~-------d~~Pll~itGqv~~~~~g~~afQe~D~~~l~~p~tk-~~~~v~~~~~ip~~i~~ 141 (550)
T COG0028 73 GPGA-TNLLTGLAD--AYM-------DSVPLLAITGQVPTSLIGTDAFQEVDQVGLFRPITK-YNFEVRSPEDIPEVVAR 141 (550)
T ss_pred CCcH-HHHHHHHHH--HHh-------cCCCEEEEeCCccccccCcchhhhcchhhHhhhhhe-eEEEeCCHHHHHHHHHH
Confidence 3333 333343432 332 5789888754322333343322433 378888753 45677788999999998
Q ss_pred hHhC-----CCcEEEEeCcccc
Q 020510 194 AIRD-----PDPVVFLENELLY 210 (325)
Q Consensus 194 a~~~-----~~Pv~ir~~~~l~ 210 (325)
|++. .+||+|-.++...
T Consensus 142 Af~~A~sgrpGpv~i~iP~Dv~ 163 (550)
T COG0028 142 AFRIALSGRPGPVVVDLPKDVL 163 (550)
T ss_pred HHHHHhcCCCceEEEEcChhHh
Confidence 8872 4899998776543
No 81
>PRK05858 hypothetical protein; Provisional
Probab=94.55 E-value=0.69 Score=47.20 Aligned_cols=149 Identities=16% Similarity=0.083 Sum_probs=86.1
Q ss_pred cHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEE-e-cc
Q 020510 38 MVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVV-E-FM 115 (325)
Q Consensus 38 s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v-~-~~ 115 (325)
+..+++.+.|.+ .+-+.++..+-.. ...+.+.+. +. .=|||.+ ..|+++..+|.|.|+..-+|-+ . +.
T Consensus 6 ~~~~~l~~~L~~---~GV~~vFg~pG~~----~~~l~dal~-~~-~i~~i~~-rhE~~A~~~AdGyar~tg~~gv~~~t~ 75 (542)
T PRK05858 6 HAGRLAARRLKA---HGVDTMFTLSGGH----LFPLYDGAR-EE-GIRLIDV-RHEQTAAFAAEAWAKLTRVPGVAVLTA 75 (542)
T ss_pred cHHHHHHHHHHH---cCCCEEEeCCCcc----hHHHHHHHH-hc-CCCEEee-ccHHHHHHHHHHHHHhcCCCeEEEEcC
Confidence 344555555543 3455555543111 122333442 23 2477776 8999999999999998444433 2 33
Q ss_pred cccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCCCcchH-H-HHHHhcCCCcEEEeeCCHHHHHHHH
Q 020510 116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQHSHC-Y-AAWYASVPGLKVLSPYSSEDARGLL 191 (325)
Q Consensus 116 ~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~tHs~~-~-~a~~~~iP~~~V~~P~d~~e~~~~l 191 (325)
.+. +.-+.--|.+ |+. .+.||+++....... +.|. + |. + .++++.+-. ......++.++...+
T Consensus 76 GpG-~~n~~~~i~~--A~~-------~~~Pvl~i~g~~~~~~~~~~~-~-q~~d~~~l~~~~tk-~~~~v~~~~~~~~~i 142 (542)
T PRK05858 76 GPG-VTNGMSAMAA--AQF-------NQSPLVVLGGRAPALRWGMGS-L-QEIDHVPFVAPVTK-FAATAQSAENAGRLV 142 (542)
T ss_pred Cch-HHHHHHHHHH--HHh-------cCCCEEEEeCCCCcccCCCCC-C-cccchhhhhhhhhc-eEEEeCCHHHHHHHH
Confidence 343 3334444543 222 589999876432222 2232 3 32 2 378888765 455567788888888
Q ss_pred HHhHh----C-CCcEEEEeCccc
Q 020510 192 KAAIR----D-PDPVVFLENELL 209 (325)
Q Consensus 192 ~~a~~----~-~~Pv~ir~~~~l 209 (325)
+.|++ . ++||||..+..+
T Consensus 143 ~~A~~~A~~~~~GPV~l~iP~dv 165 (542)
T PRK05858 143 DQALQAAVTPHRGPVFVDFPMDH 165 (542)
T ss_pred HHHHHHHcCCCCCeEEEEcChhh
Confidence 77775 2 579999877654
No 82
>PRK07524 hypothetical protein; Provisional
Probab=94.54 E-value=0.86 Score=46.38 Aligned_cols=113 Identities=23% Similarity=0.150 Sum_probs=73.2
Q ss_pred ceeechhhHHHHHHHHHHHhccCCee-EE-ecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CC--
Q 020510 85 RVLDTPITEAGFTGIGVGAAYYGLKP-VV-EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GV-- 158 (325)
Q Consensus 85 R~i~~GIaE~~~vg~A~GlA~~G~~p-~v-~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~-- 158 (325)
|||.+ -.|++++.+|.|.|+..-+| ++ .+..+. +.-+.--|.+ |+ ..+.||+++...-... +.
T Consensus 41 ~~i~~-~hE~~A~~mAdgyar~tg~~gv~~~t~GpG-~~n~~~gi~~--A~-------~~~~Pvl~i~G~~~~~~~~~~~ 109 (535)
T PRK07524 41 RHVTP-RHEQGAGFMADGYARVSGKPGVCFIITGPG-MTNIATAMGQ--AY-------ADSIPMLVISSVNRRASLGKGR 109 (535)
T ss_pred cEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCcc-HHHHHHHHHH--HH-------hcCCCEEEEeCCCChhhcCCCC
Confidence 67775 89999999999999874443 33 344444 3434455544 32 2589998876432221 21
Q ss_pred CCCcchH-H-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHh-----CCCcEEEEeCcccc
Q 020510 159 GAQHSHC-Y-AAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELLY 210 (325)
Q Consensus 159 G~tHs~~-~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~ir~~~~l~ 210 (325)
+..| +. + ..+++.+-- ..+...+++++...++.|++ .++||||-.++.+.
T Consensus 110 ~~~~-~~~d~~~l~~~~tk-~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv~ 166 (535)
T PRK07524 110 GKLH-ELPDQRAMVAGVAA-FSHTLMSAEDLPEVLARAFAVFDSARPRPVHIEIPLDVL 166 (535)
T ss_pred cccc-ccccHHHHhhhhce-eEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEEeCHhHH
Confidence 2334 42 3 488888753 55677788888888888776 25899998776543
No 83
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.49 E-value=2.3 Score=43.87 Aligned_cols=112 Identities=18% Similarity=0.073 Sum_probs=69.4
Q ss_pred ceeechhhHHHHHHHHHHHhcc-CCeeEEe-cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCC-C
Q 020510 85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVE-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGA-Q 161 (325)
Q Consensus 85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~-~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~-t 161 (325)
|+|.+ -.|++++.+|-|.|+. |...++. +..+. +.-++--+.+ |+ ..++||+++.........|. .
T Consensus 61 ~~i~~-rhE~~A~~~AdgYar~tg~~gv~~~t~GpG-~~N~l~gl~~--A~-------~~~~Pvl~i~G~~~~~~~~~~~ 129 (587)
T PRK06965 61 QHVLV-RHEQAAVHAADGYARATGKVGVALVTSGPG-VTNAVTGIAT--AY-------MDSIPMVVISGQVPTAAIGQDA 129 (587)
T ss_pred eEEEe-CCHHHHHHHHHHHHHHhCCCeEEEECCCcc-HHHHHHHHHH--Hh-------hcCCCEEEEecCCCccccCCCC
Confidence 67776 8999999999999988 5443433 44443 3435454543 33 26899998864322222221 1
Q ss_pred cchH-H-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHh----C-CCcEEEEeCccc
Q 020510 162 HSHC-Y-AAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELL 209 (325)
Q Consensus 162 Hs~~-~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~-~~Pv~ir~~~~l 209 (325)
+ |. + .++++.+-. -.....+++++..+++.|++ . .+||||-.+..+
T Consensus 130 ~-q~~d~~~l~~~itk-~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv 182 (587)
T PRK06965 130 F-QECDTVGITRPIVK-HNFLVKDVRDLAETVKKAFYIARTGRPGPVVVDIPKDV 182 (587)
T ss_pred c-ccccHHHHhcCCcc-eeEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChhh
Confidence 3 32 2 378888754 24445577777777766665 2 589999877654
No 84
>PRK07064 hypothetical protein; Provisional
Probab=94.41 E-value=5.2 Score=40.75 Aligned_cols=112 Identities=17% Similarity=0.102 Sum_probs=70.9
Q ss_pred ceeechhhHHHHHHHHHHHhcc-CCeeEE-ecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCC--CCCC-
Q 020510 85 RVLDTPITEAGFTGIGVGAAYY-GLKPVV-EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVG- 159 (325)
Q Consensus 85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~v-~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~--~g~G- 159 (325)
|++.+ ..|+++..+|.|.|+. |...++ .+..+..++ ++--|.+ |+. .++||+++...-.. .+.+
T Consensus 43 ~~i~~-~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N-~~~~i~~--A~~-------~~~Pvl~i~g~~~~~~~~~~~ 111 (544)
T PRK07064 43 RFVPA-RGEAGAVNMADAHARVSGGLGVALTSTGTGAGN-AAGALVE--ALT-------AGTPLLHITGQIETPYLDQDL 111 (544)
T ss_pred cEEee-ccHHHHHHHHHHHHHhcCCCeEEEeCCCCcHHH-HHHHHHH--HHh-------cCCCEEEEeCCCCcccccCCC
Confidence 67765 8999999999999977 544443 355454433 5555544 221 58999887643121 1222
Q ss_pred -CCcch--HHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHh----C-CCcEEEEeCccc
Q 020510 160 -AQHSH--CYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELL 209 (325)
Q Consensus 160 -~tHs~--~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~-~~Pv~ir~~~~l 209 (325)
..| + ....+++.+-. ..+...+++++..+++.|++ . ++||||-.+..+
T Consensus 112 ~~~~-~~~d~~~~~~~~tk-~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 167 (544)
T PRK07064 112 GYIH-EAPDQLTMLRAVSK-AAFRVRSAETALATIREAVRVALTAPTGPVSVEIPIDI 167 (544)
T ss_pred cccc-cccCHHHHhhhhcc-eEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEeCHhH
Confidence 234 4 23488888764 34555678887777777765 2 689999877554
No 85
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=94.22 E-value=1.6 Score=44.92 Aligned_cols=114 Identities=15% Similarity=0.026 Sum_probs=67.9
Q ss_pred ceeechhhHHHHHHHHHHHhcc-CCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCC-CCc
Q 020510 85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVG-AQH 162 (325)
Q Consensus 85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G-~tH 162 (325)
|||.+ -.|+++..+|-|.|+. |...++.+.+...+.-+.--+.+ |+. .++||+++.........+ .++
T Consensus 40 ~~v~~-rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~n~~~~i~~--A~~-------~~~Pvl~I~G~~~~~~~~~~~~ 109 (575)
T TIGR02720 40 HYIQV-RHEEVGALAAAADAKLTGKIGVCFGSAGPGATHLLNGLYD--AKE-------DHVPVLALVGQVPTTGMNMDTF 109 (575)
T ss_pred cEEEe-ccHHHHHHHHHHHHHhhCCceEEEeCCCCcHHHHHHHHHH--Hhh-------cCCCEEEEecCCccccCCCCCc
Confidence 67775 8999999999999977 44434333223344445555544 332 589998886532322222 223
Q ss_pred chH-H-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEeCcccc
Q 020510 163 SHC-Y-AAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLY 210 (325)
Q Consensus 163 s~~-~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~ir~~~~l~ 210 (325)
|. + .++++.+-- -.....+++++...++.|++ .++||||-.+..+.
T Consensus 110 -q~id~~~~~~~vtk-~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv~ 161 (575)
T TIGR02720 110 -QEMNENPIYADVAV-YNRTAMTAESLPHVIDEAIRRAYAHNGVAVVTIPVDFG 161 (575)
T ss_pred -ceechhhhhhhcce-EEEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEECcchh
Confidence 33 3 378887643 22344566666655555554 57899998776543
No 86
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.09 E-value=1.6 Score=44.79 Aligned_cols=113 Identities=19% Similarity=0.107 Sum_probs=70.5
Q ss_pred CceeechhhHHHHHHHHHHHhcc-CCeeEEe-cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCC-
Q 020510 84 ERVLDTPITEAGFTGIGVGAAYY-GLKPVVE-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGA- 160 (325)
Q Consensus 84 ~R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~-~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~- 160 (325)
=|||.+ -.|+++..+|-|.|+. |...++. +..+. +.-++--+.+ |+ ..+.||+++.........+.
T Consensus 43 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~vt~GPG-~~N~l~gl~~--A~-------~~~~Pvl~i~G~~~~~~~~~~ 111 (574)
T PRK06466 43 VEHILV-RHEQAATHMADGYARATGKTGVVLVTSGPG-ATNAITGIAT--AY-------MDSIPMVVLSGQVPSTLIGED 111 (574)
T ss_pred ceEEEe-CcHHHHHHHHHHHHHHhCCCEEEEECCCcc-HHHHHHHHHH--HH-------hcCCCEEEEecCCCccccCCC
Confidence 366665 8999999999999977 4333333 44343 3334444543 33 26899988864322222221
Q ss_pred CcchH--HHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhC-----CCcEEEEeCccc
Q 020510 161 QHSHC--YAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELL 209 (325)
Q Consensus 161 tHs~~--~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-----~~Pv~ir~~~~l 209 (325)
.+ |. ...+++.+-- -.+...++.++..+++.|++. ++|||+..+..+
T Consensus 112 ~~-q~~d~~~l~~~itk-~s~~v~~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~Dv 165 (574)
T PRK06466 112 AF-QETDMVGISRPIVK-HSFMVKHASEIPEIIKKAFYIAQSGRPGPVVVDIPKDM 165 (574)
T ss_pred cc-cccchhhhhhccce-eEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhH
Confidence 23 43 2378888765 345566788888877777763 589999877653
No 87
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=94.08 E-value=0.89 Score=46.49 Aligned_cols=114 Identities=14% Similarity=0.045 Sum_probs=69.7
Q ss_pred ceeechhhHHHHHHHHHHHhccCCeeEEe--cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCC
Q 020510 85 RVLDTPITEAGFTGIGVGAAYYGLKPVVE--FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA 160 (325)
Q Consensus 85 R~i~~GIaE~~~vg~A~GlA~~G~~p~v~--~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~ 160 (325)
|++.+ -.|+++..+|.|.|+..-+|-++ +..+. +.-++--+.+ |+. .+.||+++...-... +.+.
T Consensus 41 ~~v~~-~hE~~A~~mAdgyar~tgkpgv~~~t~GPG-~~N~l~~l~~--A~~-------~~~Pvl~i~G~~~~~~~~~~~ 109 (549)
T PRK06457 41 KYVQV-RHEEGAALAASVEAKITGKPSACMGTSGPG-SIHLLNGLYD--AKM-------DHAPVIALTGQVESDMIGHDY 109 (549)
T ss_pred eEEEe-CcHHHHHHHHHHHHHHhCCCeEEEeCCCCc-hhhhHHHHHH--HHh-------cCCCEEEEecCCCccccCCCc
Confidence 56654 89999999999999885444433 44343 3334444433 332 589998876432222 2222
Q ss_pred CcchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEeCcccc
Q 020510 161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLY 210 (325)
Q Consensus 161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~ir~~~~l~ 210 (325)
.+......+++.+-- ..+...+++++...++.|++ .++||+|..+..+.
T Consensus 110 ~q~~d~~~l~~~vtk-~~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~Dv~ 162 (549)
T PRK06457 110 FQEVNLTKLFDDVAV-FNQILINPENAEYIIRRAIREAISKRGVAHINLPVDIL 162 (549)
T ss_pred ccccchhhhhcccee-EEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeCHhHh
Confidence 221122478888754 34556677777777776665 36899998776543
No 88
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=93.98 E-value=1.1 Score=45.94 Aligned_cols=112 Identities=19% Similarity=0.091 Sum_probs=71.0
Q ss_pred ceeechhhHHHHHHHHHHHhcc-CCeeEEe-cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCC-C
Q 020510 85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVE-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGA-Q 161 (325)
Q Consensus 85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~-~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~-t 161 (325)
|+|.+ -.|++++.+|.|.|+. |...++. +..+ .+.-++--+.+ |+ ..++||+++..+-.....|. .
T Consensus 41 ~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~Gp-G~~n~l~~i~~--A~-------~~~~Pvl~i~g~~~~~~~~~~~ 109 (558)
T TIGR00118 41 EHILV-RHEQGAAHAADGYARASGKVGVVLVTSGP-GATNLVTGIAT--AY-------MDSIPMVVFTGQVPTSLIGSDA 109 (558)
T ss_pred eEEEe-CcHHHHHHHHHHHHHHhCCCEEEEECCCC-cHHHHHHHHHH--HH-------hcCCCEEEEecCCCccccCCCC
Confidence 77775 8999999999999977 5443433 4434 44445555544 22 26899998865322222221 1
Q ss_pred cchH-H-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHhC-----CCcEEEEeCccc
Q 020510 162 HSHC-Y-AAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELL 209 (325)
Q Consensus 162 Hs~~-~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-----~~Pv~ir~~~~l 209 (325)
+ |. + .++++.+-.. .....++.++..+++.|++. ++||||..+..+
T Consensus 110 ~-q~~d~~~~~~~~tk~-~~~v~~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~dv 162 (558)
T TIGR00118 110 F-QEADILGITMPITKH-SFQVKSAEDIPRIIKEAFHIATTGRPGPVLVDLPKDV 162 (558)
T ss_pred C-cccChhhhhcCccce-eEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEcChhh
Confidence 3 32 2 3788877543 34446788888888887763 589999877654
No 89
>PLN02470 acetolactate synthase
Probab=93.89 E-value=1.9 Score=44.53 Aligned_cols=155 Identities=17% Similarity=0.043 Sum_probs=87.5
Q ss_pred ccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeeEE-
Q 020510 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVV- 112 (325)
Q Consensus 35 ~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~-G~~p~v- 112 (325)
..++..+++.+.|.+ .+-+.|+.-+... ...+.+.|.+.-+ =||+.+ -.|++++.+|.|.|+. |...++
T Consensus 11 ~~~~~a~~l~~~L~~---~GV~~vFg~pG~~----~~~l~dal~~~~~-i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~ 81 (585)
T PLN02470 11 EPRKGADILVEALER---EGVDTVFAYPGGA----SMEIHQALTRSNC-IRNVLC-RHEQGEVFAAEGYAKASGKVGVCI 81 (585)
T ss_pred ccccHHHHHHHHHHH---cCCCEEEEcCCcc----cHHHHHHHhccCC-ceEEEe-ccHHHHHHHHHHHHHHhCCCEEEE
Confidence 344556666666654 2344444333111 1122234432111 367776 8999999999999977 544443
Q ss_pred ecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCCCcchHHHHHHhcCCCcEEEeeCCHHHHHHH
Q 020510 113 EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGL 190 (325)
Q Consensus 113 ~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~ 190 (325)
.+..+ .+.-++--|.+ |+. .++||+++....... +.+..|.....++++.+-.. .+...+++++..+
T Consensus 82 ~t~GP-G~~N~l~gia~--A~~-------~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~~tk~-~~~v~~~~~i~~~ 150 (585)
T PLN02470 82 ATSGP-GATNLVTGLAD--ALL-------DSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKH-NYLVMDVEDIPRV 150 (585)
T ss_pred ECCCc-cHHHHHHHHHH--HHh-------cCCcEEEEecCCChhhcCCCcCcccchhhhhhhheEE-EEEcCCHHHHHHH
Confidence 34434 44445555544 332 689998886432222 22222211223777776432 3345688899988
Q ss_pred HHHhHhC-----CCcEEEEeCccc
Q 020510 191 LKAAIRD-----PDPVVFLENELL 209 (325)
Q Consensus 191 l~~a~~~-----~~Pv~ir~~~~l 209 (325)
++.|++. ++||||-.+..+
T Consensus 151 l~~A~~~A~s~~~GPV~l~iP~Dv 174 (585)
T PLN02470 151 IREAFFLASSGRPGPVLVDIPKDI 174 (585)
T ss_pred HHHHHHHhcCCCCCeEEEEecCch
Confidence 8888873 589999877553
No 90
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.77 E-value=1.9 Score=44.29 Aligned_cols=114 Identities=23% Similarity=0.110 Sum_probs=72.9
Q ss_pred ceeechhhHHHHHHHHHHHhcc-CCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCCC
Q 020510 85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQ 161 (325)
Q Consensus 85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~t 161 (325)
|||.+ -.|+++..+|.|.|+. |...++.+.+...+.-+.--+.+ |+ ..+.||+++....... +.+..
T Consensus 44 ~~i~~-rhE~~A~~mAdgYar~tg~~gv~~~t~GPG~~n~l~gi~~--A~-------~~~~Pvl~i~G~~~~~~~~~~~~ 113 (574)
T PRK07979 44 DHVLV-RHEQAAVHMADGLARATGEVGVVLVTSGPGATNAITGIAT--AY-------MDSIPLVVLSGQVATSLIGYDAF 113 (574)
T ss_pred eEEEe-CcHHHHHHHHHHHHHHhCCceEEEECCCccHhhhHHHHHH--Hh-------hcCCCEEEEECCCChhccCCCCC
Confidence 67774 8999999999999977 65555444323334434444543 32 2589998886432222 23332
Q ss_pred cchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhC-----CCcEEEEeCccc
Q 020510 162 HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELL 209 (325)
Q Consensus 162 Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-----~~Pv~ir~~~~l 209 (325)
|.....++++.+-. -.+...+++++...++.|++. ++||||..+..+
T Consensus 114 q~~d~~~l~~~~tk-~~~~v~~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~Dv 165 (574)
T PRK07979 114 QECDMVGISRPVVK-HSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDI 165 (574)
T ss_pred ceecHHHHhhcccc-eEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhh
Confidence 22233478888754 344556889988888888872 589999877654
No 91
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.77 E-value=1.1 Score=46.11 Aligned_cols=115 Identities=16% Similarity=0.045 Sum_probs=72.4
Q ss_pred CceeechhhHHHHHHHHHHHhcc-CCeeEEe-cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCC
Q 020510 84 ERVLDTPITEAGFTGIGVGAAYY-GLKPVVE-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQ 161 (325)
Q Consensus 84 ~R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~-~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~t 161 (325)
=+||.+ -.|++++.+|-|.|+. |...++. +..+. +.-++--|.+ |+ ..+.||+++.........+..
T Consensus 53 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GpG-~~N~~~gla~--A~-------~~~~Pvl~I~G~~~~~~~~~~ 121 (570)
T PRK06725 53 LKHILT-RHEQAAIHAAEGYARASGKVGVVFATSGPG-ATNLVTGLAD--AY-------MDSIPLVVITGQVATPLIGKD 121 (570)
T ss_pred CcEEEe-cCHHHHHHHHHHHHHHhCCCeEEEECCCcc-HHHHHHHHHH--Hh-------hcCcCEEEEecCCCcccccCC
Confidence 377775 8999999999999977 5444433 44443 4444444433 32 258999887643222222221
Q ss_pred cchH-H-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHhC-----CCcEEEEeCcccc
Q 020510 162 HSHC-Y-AAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELLY 210 (325)
Q Consensus 162 Hs~~-~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-----~~Pv~ir~~~~l~ 210 (325)
..|. + ..+++.+-. -.+...+++++..+++.|++. ++|||+..+..+.
T Consensus 122 ~~q~~d~~~l~~~itk-~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv~ 176 (570)
T PRK06725 122 GFQEADVVGITVPVTK-HNYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDIPKDVQ 176 (570)
T ss_pred CCcccchhhhhhccce-eEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEccccchh
Confidence 1132 2 378888754 344457889999988888873 6899998776543
No 92
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=93.77 E-value=0.98 Score=46.09 Aligned_cols=111 Identities=19% Similarity=0.091 Sum_probs=69.8
Q ss_pred ceeechhhHHHHHHHHHHHhcc-CCeeEEe-cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCC
Q 020510 85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVE-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA 160 (325)
Q Consensus 85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~-~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~ 160 (325)
|++.+ ..|++++.+|.|.|+. |...++. +..+. +.-++--+.+ |+ ....||+++....... +.+.
T Consensus 40 ~~v~~-~hE~~A~~~Adgyar~sg~~gv~~~t~GpG-~~n~~~~l~~--A~-------~~~~Pvl~i~g~~~~~~~~~~~ 108 (548)
T PRK08978 40 EHLLC-RHEQGAAMAAIGYARATGKVGVCIATSGPG-ATNLITGLAD--AL-------LDSVPVVAITGQVSSPLIGTDA 108 (548)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCCc-HHHHHHHHHH--Hh-------hcCCCEEEEecCCCccccCCCC
Confidence 67765 8999999999999988 5443333 44343 3435555544 32 2589998886532222 2222
Q ss_pred CcchH-H-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHhC-----CCcEEEEeCccc
Q 020510 161 QHSHC-Y-AAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELL 209 (325)
Q Consensus 161 tHs~~-~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-----~~Pv~ir~~~~l 209 (325)
+ |. + .++++.+-... +...+++++..+++.|++. ++||||-.+..+
T Consensus 109 -~-q~~d~~~~~~~~tk~~-~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv 161 (548)
T PRK08978 109 -F-QEIDVLGLSLACTKHS-FLVQSLEELPEIMAEAFEIASSGRPGPVLVDIPKDI 161 (548)
T ss_pred -C-cccchhccccCceeeE-EEECCHHHHHHHHHHHHHHHhcCCCCcEEEecChhh
Confidence 3 32 2 37888775533 3345788888888877762 489999877553
No 93
>PRK11269 glyoxylate carboligase; Provisional
Probab=93.71 E-value=3.9 Score=42.21 Aligned_cols=151 Identities=11% Similarity=-0.011 Sum_probs=86.1
Q ss_pred ccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccC-CeeE--Ee
Q 020510 37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG-LKPV--VE 113 (325)
Q Consensus 37 ~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G-~~p~--v~ 113 (325)
++..+++.+.|.+ .+-+.|+..+-.. ...+.+.+.+.- .=||+.+ ..|++++.+|.|.|+.. -+|- +.
T Consensus 4 ~~~~~~l~~~L~~---~Gv~~vFg~pG~~----~~~l~dal~~~~-~i~~v~~-rhE~~A~~mAdGYar~t~g~~gv~~~ 74 (591)
T PRK11269 4 MRAVDAAVLVLEK---EGVTTAFGVPGAA----INPFYSAMRKHG-GIRHILA-RHVEGASHMAEGYTRATAGNIGVCIG 74 (591)
T ss_pred ccHHHHHHHHHHH---cCCCEEEeCCCcc----cHHHHHHHhhcC-CCcEEee-CCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 4455555555543 2445455433111 112234443221 1378886 89999999999999775 4443 33
Q ss_pred cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCCCcchH--HHHHHhcCCCcEEEeeCCHHHHHH
Q 020510 114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQHSHC--YAAWYASVPGLKVLSPYSSEDARG 189 (325)
Q Consensus 114 ~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~tHs~~--~~a~~~~iP~~~V~~P~d~~e~~~ 189 (325)
|..+..++ ++--+.+ |+. .+.||+++...-... +.+. + |. ..++++.+--. .+...++.++..
T Consensus 75 t~GPG~~N-~l~gl~~--A~~-------~~~Pvl~I~G~~~~~~~~~~~-~-q~~d~~~l~~~itk~-s~~v~~~~~~~~ 141 (591)
T PRK11269 75 TSGPAGTD-MITGLYS--ASA-------DSIPILCITGQAPRARLHKED-F-QAVDIESIAKPVTKW-AVTVREPALVPR 141 (591)
T ss_pred CCCCcHHH-HHHHHHH--Hhh-------cCCCEEEEecCCCccccCCCc-c-cccChhhHhhcceeE-EEEcCCHHHHHH
Confidence 55554444 4444433 332 689998876432222 2222 3 43 23788877442 344577888888
Q ss_pred HHHHhHhC-----CCcEEEEeCccc
Q 020510 190 LLKAAIRD-----PDPVVFLENELL 209 (325)
Q Consensus 190 ~l~~a~~~-----~~Pv~ir~~~~l 209 (325)
+++.|++. ++||||-.+..+
T Consensus 142 ~i~~A~~~A~~~~~GPV~l~iP~Dv 166 (591)
T PRK11269 142 VFQQAFHLMRSGRPGPVLIDLPFDV 166 (591)
T ss_pred HHHHHHHHHhhCCCCeEEEEeChhh
Confidence 88887762 479999877553
No 94
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=93.69 E-value=2.7 Score=43.20 Aligned_cols=153 Identities=19% Similarity=0.108 Sum_probs=86.1
Q ss_pred ccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeeEE-
Q 020510 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVV- 112 (325)
Q Consensus 35 ~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~-G~~p~v- 112 (325)
++++..+.+.+.|.+ .+-+-|+..+... ...+.+.+.+ . +=+++.+ ..|++++.+|.|.|+. |...++
T Consensus 14 ~~~~~~~~i~~~L~~---~Gv~~vFg~pG~~----~~~l~~al~~-~-~i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~ 83 (571)
T PRK07710 14 KLMTGAQMLIEALEK---EGVEVIFGYPGGA----VLPLYDALYD-C-GIPHILT-RHEQGAIHAAEGYARISGKPGVVI 83 (571)
T ss_pred ccchHHHHHHHHHHH---cCCCEEEeCCCcc----hHHHHHHHHh-c-CCcEEEe-CCHHHHHHHHHHHHHHhCCCeEEE
Confidence 344555555555544 2445444433111 1122334432 3 3578876 9999999999999987 543333
Q ss_pred ecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCCCcchHHHHHHhcCCCcEEEeeCCHHHHHHH
Q 020510 113 EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGL 190 (325)
Q Consensus 113 ~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~ 190 (325)
.+..+.. .-++--|.+ |+ ..+.||+++....... +.+..+.....++++.+-.. .+...+++++..+
T Consensus 84 ~t~GPG~-~N~~~gl~~--A~-------~~~~Pvl~ItG~~~~~~~~~~~~q~~d~~~l~~~~tk~-~~~v~~~~~~~~~ 152 (571)
T PRK07710 84 ATSGPGA-TNVVTGLAD--AM-------IDSLPLVVFTGQVATSVIGSDAFQEADIMGITMPVTKH-NYQVRKASDLPRI 152 (571)
T ss_pred ECCCccH-HHHHHHHHH--Hh-------hcCCCEEEEeccCCccccCCCCccccchhhhhhcccce-EEecCCHHHHHHH
Confidence 3444443 334444543 33 2589999886432222 22222212224788877543 3455677777777
Q ss_pred HHHhHh----C-CCcEEEEeCcc
Q 020510 191 LKAAIR----D-PDPVVFLENEL 208 (325)
Q Consensus 191 l~~a~~----~-~~Pv~ir~~~~ 208 (325)
++.|++ . ++||||-.+..
T Consensus 153 i~~A~~~A~~~~~GPV~l~iP~D 175 (571)
T PRK07710 153 IKEAFHIATTGRPGPVLIDIPKD 175 (571)
T ss_pred HHHHHHHHhcCCCCcEEEEcChh
Confidence 777776 2 58999987654
No 95
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=93.65 E-value=0.8 Score=39.25 Aligned_cols=107 Identities=15% Similarity=0.145 Sum_probs=61.1
Q ss_pred ceeechhhHHHHHHHHHHHhccCCeeEE-e-cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCC-CC
Q 020510 85 RVLDTPITEAGFTGIGVGAAYYGLKPVV-E-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVG-AQ 161 (325)
Q Consensus 85 R~i~~GIaE~~~vg~A~GlA~~G~~p~v-~-~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G-~t 161 (325)
+|+.+ -.|+++..+|-|.|+.--+|-+ . +..+ .+.-+.--+.+... ...|++++.........+ .+
T Consensus 37 ~~v~~-rhE~~A~~mAdgyar~sg~~gv~~~t~Gp-G~~n~~~gl~~A~~---------~~~Pvl~i~g~~~~~~~~~~~ 105 (162)
T cd07037 37 RLHVR-VDERSAAFFALGLAKASGRPVAVVCTSGT-AVANLLPAVVEAYY---------SGVPLLVLTADRPPELRGTGA 105 (162)
T ss_pred eEEec-cChHHHHHHHHHHHHhhCCCEEEEECCch-HHHHHhHHHHHHHh---------cCCCEEEEECCCCHHhcCCCC
Confidence 66665 8999999999999988444433 3 3333 34445555544222 579998886543322211 22
Q ss_pred cchH-H-HHHHhcCCCcEEEeeCCHHH------HHHHHHHhHh----C-CCcEEEE
Q 020510 162 HSHC-Y-AAWYASVPGLKVLSPYSSED------ARGLLKAAIR----D-PDPVVFL 204 (325)
Q Consensus 162 Hs~~-~-~a~~~~iP~~~V~~P~d~~e------~~~~l~~a~~----~-~~Pv~ir 204 (325)
+ |. + ..+++.+-.. .....++++ +..+++.|++ . ++||++-
T Consensus 106 ~-q~~d~~~l~~~vtk~-~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~ 159 (162)
T cd07037 106 N-QTIDQVGLFGDYVRW-SVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLN 159 (162)
T ss_pred C-cccchhhhccceeeE-EEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEe
Confidence 3 32 2 3777776432 333344444 4555555554 2 5899984
No 96
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=93.54 E-value=2.9 Score=43.24 Aligned_cols=116 Identities=19% Similarity=0.122 Sum_probs=68.2
Q ss_pred ceeechhhHHHHHHHHHHHhcc-CCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCCC
Q 020510 85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQ 161 (325)
Q Consensus 85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~t 161 (325)
+||.+ -.|++++.+|-|.|+. |...++.+.+...+.-++--|.+ |+. .++||+++...-... +.+..
T Consensus 44 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~gi~~--A~~-------d~vPvl~I~G~~~~~~~~~~~~ 113 (597)
T PRK08273 44 EFVQA-RHEEMAAFMAVAHAKFTGEVGVCLATSGPGAIHLLNGLYD--AKL-------DHVPVVAIVGQQARAALGGHYQ 113 (597)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHH--HHh-------cCCCEEEEecCCchhhcCCCCC
Confidence 67775 8999999999999987 54444433323344444444533 332 589998876432221 22221
Q ss_pred cchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEeCcccc
Q 020510 162 HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLY 210 (325)
Q Consensus 162 Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~ir~~~~l~ 210 (325)
+.....++++.+-.--.....+++++...++.|++ .++||||..+..+.
T Consensus 114 q~~d~~~l~~~vt~k~~~~v~~~~~~~~~l~~A~~~A~~~~gPV~i~iP~Dv~ 166 (597)
T PRK08273 114 QEVDLQSLFKDVAGAFVQMVTVPEQLRHLVDRAVRTALAERTVTAVILPNDVQ 166 (597)
T ss_pred CccCHHHHHHHHHHHHeeEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeCcchh
Confidence 11122367777641124455667777766666655 46899998776543
No 97
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=93.49 E-value=1.3 Score=41.55 Aligned_cols=142 Identities=15% Similarity=0.050 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhH---HHHHHHHHHHhccC-CeeEEec
Q 020510 39 VREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITE---AGFTGIGVGAAYYG-LKPVVEF 114 (325)
Q Consensus 39 ~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE---~~~vg~A~GlA~~G-~~p~v~~ 114 (325)
.-.++.++|.++....++.+++ .|++.++ +. | +|++..--- -.++.+|.|++++. -++++++
T Consensus 12 i~~~~~~a~~~l~~~p~d~iiv-sdiGc~~-----------~~-~-~~l~~~~~~t~mG~alPaAiGaklA~Pd~~VVai 77 (287)
T TIGR02177 12 ILSALQRALAELNLDPEQVVVV-SGIGCSA-----------KT-P-HYVNVNGFHGLHGRALPVATGIKLANPHLKVIVV 77 (287)
T ss_pred HHHHHHHHHHHhcCCCCCEEEE-ECCCccc-----------cc-C-CeEecCCcccccccHHHHHHHHHHHCCCCcEEEE
Confidence 4567777887765545565555 4776321 12 4 555543211 23556778877764 4666666
Q ss_pred ccccHH--HHHHHHHHHHHhhccccCCCCccCCEEEEeC-C---CCCCCCC-CC-----------c-----chHH--HHH
Q 020510 115 MTFNFS--MQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N---GAAAGVG-AQ-----------H-----SHCY--AAW 169 (325)
Q Consensus 115 ~~~~f~--~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~---G~~~g~G-~t-----------H-----s~~~--~a~ 169 (325)
. .+.. .-....+.+ ++. .++|++++.. + |.+.+.- ++ + ..+. .++
T Consensus 78 ~-GDG~f~~mg~~eL~t-A~r--------~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~~~~~~~~g~~~~~~np~~~a~ 147 (287)
T TIGR02177 78 G-GDGDLYGIGGNHFVA-AGR--------RNVDITVIVHDNQVYGLTKGQASPTLLKGVKTKSLPYPNIQDPVNPLLLAI 147 (287)
T ss_pred e-CchHHHhccHHHHHH-HHH--------hCcCeEEEEEECHHHHhhhcccccCccCCcceeecccCccCCCCCHHHHHH
Confidence 5 5543 233444544 333 4777666543 2 2222110 00 0 0011 244
Q ss_pred HhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510 170 YASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 170 ~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir 204 (325)
.....-.-.....+++|+..+++.|++.++|++|-
T Consensus 148 A~g~g~va~~~~~~~~eL~~ai~~Al~~~GpslIe 182 (287)
T TIGR02177 148 ALGYTFVARGFSGDVAHLKEIIKEAINHKGYALVD 182 (287)
T ss_pred hCCCCeEEEEecCCHHHHHHHHHHHHhCCCCEEEE
Confidence 44443333334699999999999999999999985
No 98
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=93.49 E-value=1.2 Score=38.19 Aligned_cols=111 Identities=23% Similarity=0.098 Sum_probs=65.2
Q ss_pred CCceeechh--hHHHHHHHHHHHhccC-CeeEEecccccH-HHHHHHHHHHHHhhccccCCCCccCCEEEEeC-C-CCCC
Q 020510 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTFNF-SMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N-GAAA 156 (325)
Q Consensus 83 p~R~i~~GI--aE~~~vg~A~GlA~~G-~~p~v~~~~~~f-~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~-G~~~ 156 (325)
|.+|+..+. +=-..+++|.|++++. -++++++. .+. .+.....+- .++. .++|++++.- + +...
T Consensus 38 p~~~~~~~~~g~mG~~lp~AiGa~la~~~~~vv~i~-GDG~f~~~~~el~-ta~~--------~~lpv~ivv~NN~~~~~ 107 (172)
T cd02004 38 PRHRLDAGTFGTLGVGLGYAIAAALARPDKRVVLVE-GDGAFGFSGMELE-TAVR--------YNLPIVVVVGNNGGWYQ 107 (172)
T ss_pred CCcEecCCCCCcccchHHHHHHHHHhCCCCeEEEEE-cchhhcCCHHHHH-HHHH--------cCCCEEEEEEECccccc
Confidence 788888653 2233556777887775 36666665 443 222334443 2442 4788665542 2 2211
Q ss_pred C----C----CC-----Ccch-HHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510 157 G----V----GA-----QHSH-CYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 157 g----~----G~-----tHs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir 204 (325)
. . +. .+.. .+..+.++. |+..+.-.+.+|+..+++.+...++|++|-
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 168 (172)
T cd02004 108 GLDGQQLSYGLGLPVTTLLPDTRYDLVAEAF-GGKGELVTTPEELKPALKRALASGKPALIN 168 (172)
T ss_pred chhhhhhhccCCCceeccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHHcCCCEEEE
Confidence 0 0 00 0111 223555555 677777889999999999999888999884
No 99
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=93.30 E-value=3.3 Score=42.40 Aligned_cols=152 Identities=17% Similarity=0.072 Sum_probs=85.8
Q ss_pred ccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeeEEe-c
Q 020510 37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVVE-F 114 (325)
Q Consensus 37 ~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~-~ 114 (325)
++..+++.+.|.+ .+-+.|+..+... ...+.+.+.+ - .=+|+.+ ..|++++.+|-|.|+. |...++. +
T Consensus 8 ~~~~~~l~~~L~~---~Gv~~vFgipG~~----~~~l~~al~~-~-~i~~v~~-~hE~~A~~~Adgyar~tg~~~v~~~t 77 (561)
T PRK06048 8 MTGARAIIKCLEK---EGVEVIFGYPGGA----IIPVYDELYD-S-DLRHILV-RHEQAAAHAADGYARATGKVGVCVAT 77 (561)
T ss_pred ccHHHHHHHHHHH---cCCCEEEECCCcc----hHHHHHHHhh-C-CCeEEEe-ccHHHHHHHHHHHHHHhCCCeEEEEC
Confidence 4445555555544 3455555443111 1122344432 2 2367776 8999999999999977 5443333 4
Q ss_pred ccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCCCcchHHHHHHhcCCCcEEEeeCCHHHHHHHHH
Q 020510 115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLK 192 (325)
Q Consensus 115 ~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~ 192 (325)
..+. +.-++--|.+ |+ ..+.||+++....... +.+..|.....++++.+-.. .+.-.++.++..+++
T Consensus 78 ~GpG-~~n~~~gl~~--A~-------~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~itk~-s~~v~~~~~i~~~i~ 146 (561)
T PRK06048 78 SGPG-ATNLVTGIAT--AY-------MDSVPIVALTGQVPRSMIGNDAFQEADITGITMPITKH-NYLVQDAKDLPRIIK 146 (561)
T ss_pred CCCc-HHHHHHHHHH--Hh-------hcCCCEEEEeccCCccccCCCCccccchhhhccCcceE-EEEeCCHHHHHHHHH
Confidence 4343 4445555544 32 2689999886432222 22222211223777777432 334567888888888
Q ss_pred HhHh-----CCCcEEEEeCccc
Q 020510 193 AAIR-----DPDPVVFLENELL 209 (325)
Q Consensus 193 ~a~~-----~~~Pv~ir~~~~l 209 (325)
.|++ .++||||..+..+
T Consensus 147 ~A~~~A~~~~~GPV~l~iP~dv 168 (561)
T PRK06048 147 EAFHIASTGRPGPVLIDLPKDV 168 (561)
T ss_pred HHHHHHhcCCCCeEEEecChhh
Confidence 7777 2589999877553
No 100
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=93.24 E-value=0.24 Score=41.37 Aligned_cols=108 Identities=19% Similarity=0.321 Sum_probs=68.6
Q ss_pred eeechh-hHHHHHHHHHHHhccCCeeEEecccccHHH--HHHHHHHHHHhhccccCCCCccCCEEEEeCC-CCCCCCCCC
Q 020510 86 VLDTPI-TEAGFTGIGVGAAYYGLKPVVEFMTFNFSM--QAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAGVGAQ 161 (325)
Q Consensus 86 ~i~~GI-aE~~~vg~A~GlA~~G~~p~v~~~~~~f~~--ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~~g~G~t 161 (325)
+.+++. .|...+|+++|+.++|.+|..-++.+..-+ -++..+.. . -++|+.+..++ |.... +..
T Consensus 43 i~~i~vtREEeg~GIcAGa~lAGkk~ailmQnsGlGNsiNal~SL~~--t---------y~iPl~ml~ShRG~~~E-~i~ 110 (172)
T COG4032 43 IPEIPVTREEEGVGICAGAYLAGKKPAILMQNSGLGNSINALASLYV--T---------YKIPLLMLASHRGVLKE-GIE 110 (172)
T ss_pred cccccccchhcceeeehhhhhcCCCcEEEEeccCcchHHHHHHHHHH--H---------hccchhhhhhccchhhc-CCc
Confidence 566655 689999999999999999999888765422 33333211 1 24665554443 44322 222
Q ss_pred c---ch-HHHHHHhcCCCcEEEeeCCHHHHHHHHHH----hHhCCCcEEEEeC
Q 020510 162 H---SH-CYAAWYASVPGLKVLSPYSSEDARGLLKA----AIRDPDPVVFLEN 206 (325)
Q Consensus 162 H---s~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~----a~~~~~Pv~ir~~ 206 (325)
- .. ....++... ++.-+.|..|+|+..++.. +++...||.+..+
T Consensus 111 AQVpmGr~~~kiLe~~-~lpt~t~~~p~Ea~~li~~~~~~a~~~s~pv~vlls 162 (172)
T COG4032 111 AQVPMGRALPKILEGL-ELPTYTIIGPEEALPLIENAILDAFENSRPVAVLLS 162 (172)
T ss_pred cccccchhhHHHHhhc-CCcccccCCHHHHHHHHHHHHHHHHHcCCceEEEec
Confidence 1 11 223566654 6668889999998877765 4556789998754
No 101
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.22 E-value=1.6 Score=45.08 Aligned_cols=113 Identities=17% Similarity=0.071 Sum_probs=71.0
Q ss_pred CceeechhhHHHHHHHHHHHhcc-CCeeEEe-cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCC-
Q 020510 84 ERVLDTPITEAGFTGIGVGAAYY-GLKPVVE-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGA- 160 (325)
Q Consensus 84 ~R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~-~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~- 160 (325)
=|||.+ ..|++++.+|-|.|+. |...++. +..+. +.-++--|.+ |+ ..+.||+++.........|.
T Consensus 50 i~~I~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG-~~N~l~gia~--A~-------~~~~Pvl~i~G~~~~~~~~~~ 118 (595)
T PRK09107 50 IQHILV-RHEQGAGHAAEGYARSTGKPGVVLVTSGPG-ATNAVTPLQD--AL-------MDSIPLVCITGQVPTHLIGSD 118 (595)
T ss_pred CeEEEE-CChHHHHHHHHHHHHHhCCCEEEEECCCcc-HhHHHHHHHH--Hh-------hcCCCEEEEEcCCChhhcCCC
Confidence 378876 9999999999999976 6444443 44443 3334444433 33 25899988764322222221
Q ss_pred CcchH-H-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHhC-----CCcEEEEeCccc
Q 020510 161 QHSHC-Y-AAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELL 209 (325)
Q Consensus 161 tHs~~-~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-----~~Pv~ir~~~~l 209 (325)
.+ |. + .++++.+-- -.+...++.++..+++.|++. ++||||-.+..+
T Consensus 119 ~~-q~~d~~~l~~~vtk-~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv 172 (595)
T PRK09107 119 AF-QECDTVGITRPCTK-HNWLVKDVNDLARVIHEAFHVATSGRPGPVVVDIPKDV 172 (595)
T ss_pred CC-cccchhhhhhhheE-EEEEeCCHHHHHHHHHHHHHHhcCCCCceEEEecCCCh
Confidence 23 32 2 377777643 233457888888888888773 589999877654
No 102
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=93.18 E-value=2.5 Score=43.61 Aligned_cols=115 Identities=16% Similarity=0.055 Sum_probs=70.4
Q ss_pred ceeechhhHHHHHHHHHHHhccCCeeEEec-ccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCCC
Q 020510 85 RVLDTPITEAGFTGIGVGAAYYGLKPVVEF-MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQ 161 (325)
Q Consensus 85 R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~-~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~t 161 (325)
|||.+ -.|++++.+|-|.|+...+|-+++ .....+.-++--+.+ |+. .+.||+++....... +.|..
T Consensus 43 ~~i~~-rhE~~A~~mAdgyar~tgk~~v~~v~~GpG~~N~~~gl~~--A~~-------~~~Pvl~I~G~~~~~~~~~~~~ 112 (578)
T PRK06546 43 EWVHV-RHEEAAAFAAAAEAQLTGKLAVCAGSCGPGNLHLINGLYD--AHR-------SGAPVLAIASHIPSAQIGSGFF 112 (578)
T ss_pred eEEEe-CcHHHHHHHHHhHHHhhCCceEEEECCCCcHHHHHHHHHH--HHh-------cCCCEEEEeCCCCccccCCCCc
Confidence 57775 799999999999999844444432 222233434444543 332 589999886432222 23332
Q ss_pred cchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEeCcccc
Q 020510 162 HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLY 210 (325)
Q Consensus 162 Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~ir~~~~l~ 210 (325)
|......+++.+-- -.+...+++++...++.|++ .++||+|-.+..+.
T Consensus 113 Qe~d~~~l~~~~tk-~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~lP~Dv~ 164 (578)
T PRK06546 113 QETHPDRLFVECSG-YCEMVSSAEQAPRVLHSAIQHAVAGGGVSVVTLPGDIA 164 (578)
T ss_pred cccChhhhccccee-eEeEeCCHHHHHHHHHHHHHHHhcCCCCEEEEcChhhh
Confidence 21122477776643 34566778888777776666 36899998776543
No 103
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=93.14 E-value=3 Score=37.95 Aligned_cols=38 Identities=21% Similarity=0.135 Sum_probs=29.0
Q ss_pred HHHHhcC--CCcEEEeeCCHHHHHHHHHHhHh-CCCcEEEE
Q 020510 167 AAWYASV--PGLKVLSPYSSEDARGLLKAAIR-DPDPVVFL 204 (325)
Q Consensus 167 ~a~~~~i--P~~~V~~P~d~~e~~~~l~~a~~-~~~Pv~ir 204 (325)
..+.++. +.+....+.++.|++.+++.+++ .++|++|-
T Consensus 159 ~~iA~a~G~~~~~~~~v~~~~~l~~al~~al~~~~GP~lI~ 199 (237)
T cd02018 159 VLIAATHGCVYVARLSPALKKHFLKVVKEAISRTDGPTFIH 199 (237)
T ss_pred HHHHHHCCCCEEEEEccCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 3555554 44333459999999999999998 89999984
No 104
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.13 E-value=2.5 Score=43.32 Aligned_cols=112 Identities=19% Similarity=0.087 Sum_probs=72.3
Q ss_pred ceeechhhHHHHHHHHHHHhcc-CCeeE-EecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCC-C
Q 020510 85 RVLDTPITEAGFTGIGVGAAYY-GLKPV-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGA-Q 161 (325)
Q Consensus 85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~-v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~-t 161 (325)
+++.+ -.|++++.+|.|.|+. |...+ +.+..+.+++ ++--+.+ |+. .+.||++++........|. .
T Consensus 43 ~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n-~~~gla~--A~~-------~~~Pvl~i~G~~~~~~~~~~~ 111 (563)
T PRK08527 43 KHILT-RHEQAAVHAADGYARASGKVGVAIVTSGPGFTN-AVTGLAT--AYM-------DSIPLVLISGQVPNSLIGTDA 111 (563)
T ss_pred eEEEe-ccHHHHHHHHHHHHhhhCCCEEEEECCCCcHHH-HHHHHHH--Hhh-------cCCCEEEEecCCCccccCCCC
Confidence 67665 8999999999999977 54434 3355454444 5555544 332 6899998864322222221 1
Q ss_pred cchH-H-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHhC-----CCcEEEEeCccc
Q 020510 162 HSHC-Y-AAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELL 209 (325)
Q Consensus 162 Hs~~-~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-----~~Pv~ir~~~~l 209 (325)
+ |. + .++++.+-. ..+...+++++..+++.|++. ++||||-.+..+
T Consensus 112 ~-q~~d~~~~~~~~tk-~s~~v~~~~~i~~~l~~A~~~a~s~~~GPV~l~iP~Dv 164 (563)
T PRK08527 112 F-QEIDAVGISRPCVK-HNYLVKSIEELPRILKEAFYIARSGRPGPVHIDIPKDV 164 (563)
T ss_pred C-cccchhhhhhcccc-eEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhH
Confidence 3 33 2 378887754 345568999999999988872 479999876543
No 105
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=92.93 E-value=5.1 Score=41.56 Aligned_cols=113 Identities=18% Similarity=0.085 Sum_probs=71.5
Q ss_pred ceeechhhHHHHHHHHHHHhcc-CCeeEE-ecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCC
Q 020510 85 RVLDTPITEAGFTGIGVGAAYY-GLKPVV-EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA 160 (325)
Q Consensus 85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~v-~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~ 160 (325)
++|.+ -.|++++.+|.|.|+. |...++ .+..+.+++ ++--|.+ |+ ..++||++++...... +.+.
T Consensus 71 ~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N-~l~gl~~--A~-------~~~~PllvI~G~~~~~~~~~~~ 139 (612)
T PRK07789 71 RHVLV-RHEQGAGHAAEGYAQATGRVGVCMATSGPGATN-LVTPIAD--AN-------MDSVPVVAITGQVGRGLIGTDA 139 (612)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHH-HHHHHHH--Hh-------hcCCCEEEEecCCCccccCCCc
Confidence 66665 8999999999999987 644443 344444333 4454543 33 2689998886532222 2222
Q ss_pred CcchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhC-----CCcEEEEeCccc
Q 020510 161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELL 209 (325)
Q Consensus 161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-----~~Pv~ir~~~~l 209 (325)
.+.....++++.+-. ..+...+++++..+++.|++. ++||||-.+..+
T Consensus 140 ~q~~d~~~l~~~~tk-~s~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~Dv 192 (612)
T PRK07789 140 FQEADIVGITMPITK-HNFLVTDADDIPRVIAEAFHIASTGRPGPVLVDIPKDA 192 (612)
T ss_pred Ccccchhhhhhccee-EEEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEEccch
Confidence 221122478888764 334567888988888888862 589999877654
No 106
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=92.92 E-value=3.7 Score=42.08 Aligned_cols=154 Identities=16% Similarity=0.064 Sum_probs=86.5
Q ss_pred cccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeE-Ee-
Q 020510 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPV-VE- 113 (325)
Q Consensus 36 ~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~-v~- 113 (325)
+++..+++.+.|.+ .+-+.|+..+... ...+.+.+.+.- .=||+. ...|+++..+|.|.|+..-+|- +.
T Consensus 12 ~~~~~~~l~~~L~~---~GV~~vFgvpG~~----~~~l~dal~~~~-~i~~i~-~~hE~~A~~~Adgyar~tg~~gv~~~ 82 (564)
T PRK08155 12 RFTGAELIVRLLER---QGIRIVTGIPGGA----ILPLYDALSQST-QIRHIL-ARHEQGAGFIAQGMARTTGKPAVCMA 82 (564)
T ss_pred cccHHHHHHHHHHH---cCCCEEEeCCCcc----cHHHHHHHhccC-CceEEE-eccHHHHHHHHHHHHHHcCCCeEEEE
Confidence 34445555555543 3456555544211 112223443211 136777 4899999999999999854543 33
Q ss_pred cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCCCcchHHHHHHhcCCCcEEEeeCCHHHHHHHH
Q 020510 114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLL 191 (325)
Q Consensus 114 ~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l 191 (325)
+..+.. .-++--+.+ |+. .+.||+++..+-... +.+..+.....++++.+--.. +...+++++...+
T Consensus 83 t~GpG~-~N~l~gl~~--A~~-------~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~~tk~~-~~v~~~~~~~~~i 151 (564)
T PRK08155 83 CSGPGA-TNLVTAIAD--ARL-------DSIPLVCITGQVPASMIGTDAFQEVDTYGISIPITKHN-YLVRDIEELPQVI 151 (564)
T ss_pred CCCCcH-HHHHHHHHH--HHh-------cCCCEEEEeccCCcccccCCCccccchhhhhhccceEE-EEcCCHHHHHHHH
Confidence 444433 334555544 332 689998876432221 222222112247888775433 3345788888888
Q ss_pred HHhHhC-----CCcEEEEeCccc
Q 020510 192 KAAIRD-----PDPVVFLENELL 209 (325)
Q Consensus 192 ~~a~~~-----~~Pv~ir~~~~l 209 (325)
+.|++. ++||||-.+..+
T Consensus 152 ~~A~~~a~~~~~GPV~i~iP~Dv 174 (564)
T PRK08155 152 SDAFRIAQSGRPGPVWIDIPKDV 174 (564)
T ss_pred HHHHHHHhcCCCCcEEEEcCHhH
Confidence 877762 589999876543
No 107
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.73 E-value=4.9 Score=41.26 Aligned_cols=110 Identities=22% Similarity=0.119 Sum_probs=69.5
Q ss_pred ceeechhhHHHHHHHHHHHhcc-CCeeEEe-cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCC
Q 020510 85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVE-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA 160 (325)
Q Consensus 85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~-~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~ 160 (325)
||+.+ -.|+++..+|-|.|+. |...++. +..+. +.-++--|.+ |+ ..++||+++..+.... +.+.
T Consensus 44 ~~v~~-~hE~~A~~mAdgyar~tg~~gv~~~t~GpG-~~N~l~~i~~--A~-------~~~~Pvlvi~G~~~~~~~~~~~ 112 (574)
T PRK06882 44 EHVLV-RHEQAAVHMADGYARSTGKVGCVLVTSGPG-ATNAITGIAT--AY-------TDSVPLVILSGQVPSNLIGTDA 112 (574)
T ss_pred eEEEe-ccHHHHHHHHHHHHHhhCCCeEEEECCCcc-HHHHHHHHHH--Hh-------hcCCCEEEEecCCCccccCCCc
Confidence 67776 8999999999999987 5333333 44443 3434454543 22 2689999886432222 2222
Q ss_pred CcchH--HHHHHhcCCCcEEEeeCCHHHHHHHHHHhHh-----CCCcEEEEeCcc
Q 020510 161 QHSHC--YAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENEL 208 (325)
Q Consensus 161 tHs~~--~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~ir~~~~ 208 (325)
+ |. ...+++.+-. ......+++++...++.|++ .++||||-.+..
T Consensus 113 -~-q~~d~~~l~~~vtk-~s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06882 113 -F-QECDMLGISRPVVK-HSFIVKNAEDIPSTIKKAFYIASTGRPGPVVIDIPKD 164 (574)
T ss_pred -c-cccchhhhhhcccc-eEEEeCCHHHHHHHHHHHHHHHhcCCCCCEEEecCHH
Confidence 3 32 2478887653 34556688888777777776 258999987654
No 108
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=92.56 E-value=2.3 Score=43.64 Aligned_cols=113 Identities=23% Similarity=0.144 Sum_probs=70.1
Q ss_pred ceeechhhHHHHHHHHHHHhcc-CCeeE-EecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCC
Q 020510 85 RVLDTPITEAGFTGIGVGAAYY-GLKPV-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA 160 (325)
Q Consensus 85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~-v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~ 160 (325)
|||.+ -.|++++.+|.|.|+. |...+ +.+..+. +.-++--|.+ |+. .+.||+++....... +.+.
T Consensus 50 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG-~~n~~~gla~--A~~-------~~~Pvl~i~G~~~~~~~~~~~ 118 (566)
T PRK07282 50 RHILA-RHEQGALHEAEGYAKSTGKLGVAVVTSGPG-ATNAITGIAD--AMS-------DSVPLLVFTGQVARAGIGKDA 118 (566)
T ss_pred eEEEe-cCHHHHHHHHHHHHHHhCCCeEEEECCCcc-HHHHHHHHHH--Hhh-------cCCCEEEEecccccccCCCCC
Confidence 78876 8999999999999977 64443 3344443 4444444543 321 589999886432222 2222
Q ss_pred CcchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhC-----CCcEEEEeCccc
Q 020510 161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELL 209 (325)
Q Consensus 161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-----~~Pv~ir~~~~l 209 (325)
.|.....++++.+-... ....+++++..+++.|++. ++||||-.+..+
T Consensus 119 ~q~~d~~~~~~~itk~s-~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 171 (566)
T PRK07282 119 FQEADIVGITMPITKYN-YQIRETADIPRIITEAVHIATTGRPGPVVIDLPKDV 171 (566)
T ss_pred ccccChhchhcCCCcee-EEcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCChhh
Confidence 22122237888775433 3445778888787777763 589999877654
No 109
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=92.43 E-value=4.2 Score=34.62 Aligned_cols=109 Identities=15% Similarity=0.080 Sum_probs=65.8
Q ss_pred ceeechhhHHHHHHHHHHHhccCCeeEEe--cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCC
Q 020510 85 RVLDTPITEAGFTGIGVGAAYYGLKPVVE--FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA 160 (325)
Q Consensus 85 R~i~~GIaE~~~vg~A~GlA~~G~~p~v~--~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~ 160 (325)
||+.+ -.|+++..+|.|.|+.. +|-++ +..+ .+.-+..-+.+. +. ...|++++....... +.+.
T Consensus 37 ~~i~~-rhE~~A~~mA~gyar~t-~~gv~~~t~Gp-G~~n~~~gl~~A--~~-------~~~Pvl~i~g~~~~~~~~~~~ 104 (162)
T cd07038 37 RWVGN-CNELNAGYAADGYARVK-GLGALVTTYGV-GELSALNGIAGA--YA-------EHVPVVHIVGAPSTKAQASGL 104 (162)
T ss_pred eEEee-CCHHHHHHHHHHHHHhh-CCEEEEEcCCc-cHHHHHHHHHHH--HH-------cCCCEEEEecCCCcccccccc
Confidence 55554 89999999999999886 34333 3333 344455656542 21 579999886532221 2211
Q ss_pred -Cc-----c-hHH-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEeC
Q 020510 161 -QH-----S-HCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLEN 206 (325)
Q Consensus 161 -tH-----s-~~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~ir~~ 206 (325)
.| . +.+ .++++.+-.. .+...+++++..+++.|++ .++||+|-.+
T Consensus 105 ~~~~~~~~~~~~d~~~~~~~~tk~-~~~v~~~~~i~~~v~~A~~~a~s~~gPV~l~iP 161 (162)
T cd07038 105 LLHHTLGDGDFDVFLKMFEEITCA-AARLTDPENAAEEIDRVLRTALRESRPVYIEIP 161 (162)
T ss_pred ceeecccccchHHHHHHHHhheeE-EEEeCCHHHHHHHHHHHHHHHHHCCCCEEEEcc
Confidence 12 1 123 4788777442 3444677777777777776 3689998543
No 110
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=92.28 E-value=4.7 Score=41.45 Aligned_cols=113 Identities=13% Similarity=0.060 Sum_probs=69.8
Q ss_pred ceeechhhHHHHHHHHHHHhccCCe-eEEe-cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCC---
Q 020510 85 RVLDTPITEAGFTGIGVGAAYYGLK-PVVE-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVG--- 159 (325)
Q Consensus 85 R~i~~GIaE~~~vg~A~GlA~~G~~-p~v~-~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G--- 159 (325)
|||.+ -.|+++..+|-|.|+..-+ .++. +..+ .+.-+.--|.+ |+. .+.||+++..+-.....+
T Consensus 52 ~~V~~-rhE~~A~~~Adgyar~tgk~gv~~~t~GP-G~~N~~~gla~--A~~-------d~~Pvl~I~G~~~~~~~~~~~ 120 (569)
T PRK08327 52 EFVIC-PHEIVAISMAHGYALVTGKPQAVMVHVDV-GTANALGGVHN--AAR-------SRIPVLVFAGRSPYTEEGELG 120 (569)
T ss_pred cEEec-CCHHHHHHHHHHHHHhhCCCeEEEEecCH-HHHHHHHHHHH--Hhh-------cCCCEEEEeccCCcccccccc
Confidence 77776 8899999999999988443 3333 3434 34444444433 332 589998875432111111
Q ss_pred ----CCc-chH--HH-HHHhcCCCcEEEeeCCHHHHHHHHHHhHh-----CCCcEEEEeCccc
Q 020510 160 ----AQH-SHC--YA-AWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELL 209 (325)
Q Consensus 160 ----~tH-s~~--~~-a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~ir~~~~l 209 (325)
..| .|. +. .+++.+-. ..+...+++++...++.|++ .++||||..+..+
T Consensus 121 ~~~~~~~~~qe~~d~~~~~~~vtk-~~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~i~iP~Dv 182 (569)
T PRK08327 121 SRNTRIHWTQEMRDQGGLVREYVK-WDYEIRRGDQIGEVVARAIQIAMSEPKGPVYLTLPREV 182 (569)
T ss_pred ccccCcccchhhhhHHHHHhhhhh-hhcccCCHHHHHHHHHHHHHHHhcCCCCCEEEECcHHH
Confidence 011 133 33 78887643 34566778888888887776 2589999877554
No 111
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=92.16 E-value=1.7 Score=44.70 Aligned_cols=113 Identities=17% Similarity=0.071 Sum_probs=70.6
Q ss_pred ceeechhhHHHHHHHHHHHhcc-CCeeEEe-cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCC
Q 020510 85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVE-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA 160 (325)
Q Consensus 85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~-~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~ 160 (325)
|||.+ ..|+++..+|.|.|+. |...++. +..+..++ ++--|.+ |+. .++||+++....... +.+.
T Consensus 45 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N-~l~gi~~--A~~-------~~~Pvl~i~G~~~~~~~~~~~ 113 (572)
T PRK06456 45 RHVLM-RHEQAAAHAADGYARASGVPGVCTATSGPGTTN-LVTGLIT--AYW-------DSSPVIAITGQVPRSVMGKMA 113 (572)
T ss_pred eEEEe-CcHHHHHHHHHHHHHhhCCCEEEEeCCCCCHHH-HHHHHHH--HHh-------hCCCEEEEecCCCccccCCCC
Confidence 57775 8999999999999988 5433333 45454444 5555544 332 589998886432222 2222
Q ss_pred CcchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHh-----CCCcEEEEeCccc
Q 020510 161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELL 209 (325)
Q Consensus 161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~ir~~~~l 209 (325)
.+.....++++.+--.. +...+++++...++.|++ .++||||-.+..+
T Consensus 114 ~q~~d~~~i~~~~tk~~-~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 166 (572)
T PRK06456 114 FQEADAMGVFENVTKYV-IGIKRIDEIPQWIKNAFYIATTGRPGPVVIDIPRDI 166 (572)
T ss_pred ccccchhhhhhccceeE-EEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecChhH
Confidence 22112247888876533 334678888887777776 2589999877654
No 112
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=91.96 E-value=2.4 Score=36.63 Aligned_cols=111 Identities=20% Similarity=0.128 Sum_probs=63.9
Q ss_pred CCceeechh--hHHHHHHHHHHHhcc-CCeeEEecccccH-HHHHHHHHHHHHhhccccCCCCccCCEEEEe--CCCCCC
Q 020510 83 PERVLDTPI--TEAGFTGIGVGAAYY-GLKPVVEFMTFNF-SMQAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGAAA 156 (325)
Q Consensus 83 p~R~i~~GI--aE~~~vg~A~GlA~~-G~~p~v~~~~~~f-~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~--~~G~~~ 156 (325)
|.+|+..+- +=-..+..|.|++++ .-++++++. .+. .+.....+.. +.. .++|++++. .++...
T Consensus 38 ~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~-GDG~f~m~~~eL~t-a~~--------~~l~vi~vV~NN~~~g~ 107 (177)
T cd02010 38 PNTCLISNGLATMGVALPGAIGAKLVYPDRKVVAVS-GDGGFMMNSQELET-AVR--------LKIPLVVLIWNDNGYGL 107 (177)
T ss_pred CCCEEeCCCChhhhhHHHHHHHHHHhCCCCcEEEEE-cchHHHhHHHHHHH-HHH--------HCCCeEEEEEECCcchH
Confidence 688887532 112344577777765 356676665 442 2223333333 332 467766653 223221
Q ss_pred C-------CCC-Cc---ch-HHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510 157 G-------VGA-QH---SH-CYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 157 g-------~G~-tH---s~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir 204 (325)
- .+. .+ .. ++.++.+.+ |++-+...+++|+...++++++.++|.+|-
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 166 (177)
T cd02010 108 IKWKQEKEYGRDSGVDFGNPDFVKYAESF-GAKGYRIESADDLLPVLERALAADGVHVID 166 (177)
T ss_pred HHHHHHHhcCCcccCcCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 000 01 01 223555555 677788899999999999999989999985
No 113
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=91.72 E-value=4.6 Score=41.74 Aligned_cols=112 Identities=16% Similarity=0.045 Sum_probs=70.2
Q ss_pred ceeechhhHHHHHHHHHHHhccC-CeeEEe--cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCC
Q 020510 85 RVLDTPITEAGFTGIGVGAAYYG-LKPVVE--FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG 159 (325)
Q Consensus 85 R~i~~GIaE~~~vg~A~GlA~~G-~~p~v~--~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G 159 (325)
|||.+ -.|++++.+|-|.|+.. .+|-++ +..+.+++ ++--+.+ |+. .+.||+++...-.+. +.+
T Consensus 43 ~~V~~-rhE~~A~~mAdgyaR~t~g~~gv~~~t~GpG~~N-~~~gla~--A~~-------~~~Pvl~I~G~~~~~~~~~~ 111 (588)
T TIGR01504 43 RHILA-RHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTD-MITGLYS--ASA-------DSIPILCITGQAPRARLHKE 111 (588)
T ss_pred cEEee-CCHHHHHHHHHHHHHhcCCCeEEEEECCCccHHH-HHHHHHH--Hhh-------cCCCEEEEecCCCccccCCC
Confidence 67664 78999999999999864 444333 44444333 4444543 322 589998886432222 222
Q ss_pred CCcchH--HHHHHhcCCCcEEEeeCCHHHHHHHHHHhHh-----CCCcEEEEeCcccc
Q 020510 160 AQHSHC--YAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELLY 210 (325)
Q Consensus 160 ~tHs~~--~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~ir~~~~l~ 210 (325)
. + |. ..++++.+--. .+...+++++...++.|++ .++||||-.+..+.
T Consensus 112 ~-~-q~~D~~~~~~~vtk~-~~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv~ 166 (588)
T TIGR01504 112 D-F-QAVDIAAIAKPVSKM-AVTVREAALVPRVLQQAFHLMRSGRPGPVLIDLPFDVQ 166 (588)
T ss_pred c-c-cccCHHHHhhhhceE-EEEcCCHHHHHHHHHHHHHHHccCCCCeEEEEeCcchh
Confidence 2 3 33 24788887543 3444678888888888876 24799998776543
No 114
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=91.52 E-value=2.4 Score=36.54 Aligned_cols=113 Identities=15% Similarity=0.162 Sum_probs=62.6
Q ss_pred hCCCcee-echhhH-HHHHHHHHHHhccCCeeEEecccccH-HHHHHHHHHHHHhhccccCCCCccCCEEEEeC-CCCCC
Q 020510 81 YGPERVL-DTPITE-AGFTGIGVGAAYYGLKPVVEFMTFNF-SMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAA 156 (325)
Q Consensus 81 ~gp~R~i-~~GIaE-~~~vg~A~GlA~~G~~p~v~~~~~~f-~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G~~~ 156 (325)
..|.+|+ +.|..- -..++.|.|++++--+|++++. .+. .+.....+-. +. +.++|++++.- ++.++
T Consensus 39 ~~~~~~~~~~g~g~mG~~l~~aiGa~la~~~~Vv~i~-GDGsf~m~~~eL~t-a~--------~~~l~v~ivVlNN~~~g 108 (175)
T cd02009 39 DKTVRVFANRGASGIDGTLSTALGIALATDKPTVLLT-GDLSFLHDLNGLLL-GK--------QEPLNLTIVVINNNGGG 108 (175)
T ss_pred CCCceEEecCCccchhhHHHHHHHHHhcCCCCEEEEE-ehHHHHHhHHHHHh-cc--------ccCCCeEEEEEECCCCc
Confidence 3377888 434322 1345677776655456777665 443 2222222322 22 24677666542 22211
Q ss_pred --C--C----CC---C-----cchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510 157 --G--V----GA---Q-----HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 157 --g--~----G~---t-----Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir 204 (325)
. . +. . +.-.+.++.+++ |+.-+...+++|+...++++++.++|.+|-
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lIe 171 (175)
T cd02009 109 IFSLLPQASFEDEFERLFGTPQGLDFEHLAKAY-GLEYRRVSSLDELEQALESALAQDGPHVIE 171 (175)
T ss_pred hheeccCCcccchhhhhhcCCCCCCHHHHHHHc-CCCeeeCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 0 00 0 111223555555 566777789999999999999988999873
No 115
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=91.40 E-value=3.9 Score=38.30 Aligned_cols=145 Identities=19% Similarity=0.160 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccC-CeeEEecccc
Q 020510 39 VREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG-LKPVVEFMTF 117 (325)
Q Consensus 39 ~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G-~~p~v~~~~~ 117 (325)
.-.++.++|.++....++.+++ .|++-++ ....+.+-+ .+.. .- -.++.+|.|++++. -++++.+. .
T Consensus 18 il~al~~al~~l~~~~~~~ivv-sdiGc~~----~~~~~~~~~----~~~~-~~-G~alp~A~GaklA~Pd~~VV~i~-G 85 (279)
T PRK11866 18 ILEALRKALAELGIPPENVVVV-SGIGCSS----NLPEFLNTY----GIHG-IH-GRVLPIATGVKWANPKLTVIGYG-G 85 (279)
T ss_pred HHHHHHHHHHHhcCCCCCEEEE-ECCchhh----hhhhhccCC----Cccc-cc-ccHHHHHHHHHHHCCCCcEEEEE-C
Confidence 4566677776654445565555 4666322 111121111 1121 11 45567778877763 35666555 4
Q ss_pred cH--HHHHHHHHHHHHhhccccCCCCccCCEEEEeC-C---CCCCC-C------CC----C-cc-----hHHHHHHh--c
Q 020510 118 NF--SMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N---GAAAG-V------GA----Q-HS-----HCYAAWYA--S 172 (325)
Q Consensus 118 ~f--~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~---G~~~g-~------G~----t-Hs-----~~~~a~~~--~ 172 (325)
+. ..-.+..+.+ +++ .++|++++.- + |.+.+ . |. + .. .++..+.. .
T Consensus 86 DG~~f~ig~~eL~t-A~r--------rn~~i~vIV~nN~~ygmtggQ~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G 156 (279)
T PRK11866 86 DGDGYGIGLGHLPH-AAR--------RNVDITYIVSNNQVYGLTTGQASPTTPRGVKTKTTPDGNIEEPFNPIALALAAG 156 (279)
T ss_pred ChHHHHccHHHHHH-HHH--------HCcCcEEEEEEChhhhhhcccccCCCCCCceeeccCCCCCCCCCCHHHHHHHCC
Confidence 44 5566666765 343 4666655532 2 22221 1 00 0 00 02234444 4
Q ss_pred CCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510 173 VPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 173 iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir 204 (325)
.+.+....+.++.|+...++.|++.++|++|-
T Consensus 157 ~~~Va~~~~~~~~~l~~~l~~Al~~~Gps~I~ 188 (279)
T PRK11866 157 ATFVARGFSGDVKHLKEIIKEAIKHKGFSFID 188 (279)
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 55566677799999999999999999999985
No 116
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=91.05 E-value=5.4 Score=40.69 Aligned_cols=115 Identities=16% Similarity=0.046 Sum_probs=65.6
Q ss_pred ceeechhhHHHHHHHHHHHhcc-CCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCC-
Q 020510 85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA- 160 (325)
Q Consensus 85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~- 160 (325)
||+. .-.|+++.-+|-|.|+. |...++.+.+.....-+.--|.. |+. .++||+++...-... +.+.
T Consensus 40 ~~v~-~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gia~--A~~-------~~~Pvl~i~g~~~~~~~~~~~~ 109 (535)
T TIGR03394 40 PLHT-LSHEPAVGFAADAAARYRGTLGVAAVTYGAGAFNMVNAIAG--AYA-------EKSPVVVISGAPGTTEGNAGLL 109 (535)
T ss_pred eEEc-ccCcchHHHHHhHHHHhhCCceEEEEecchHHHhhhhHHHH--Hhh-------cCCCEEEEECCCCcccccCCce
Confidence 6777 48999999999999988 54444433323334444444433 332 589998886432221 2222
Q ss_pred CcchH----H-HHHHhcCCCcEEEeeCCHHHHH----HHHHHhHhCCCcEEEEeCcccc
Q 020510 161 QHSHC----Y-AAWYASVPGLKVLSPYSSEDAR----GLLKAAIRDPDPVVFLENELLY 210 (325)
Q Consensus 161 tHs~~----~-~a~~~~iP~~~V~~P~d~~e~~----~~l~~a~~~~~Pv~ir~~~~l~ 210 (325)
+|.|. + ..+++.+-.. .....++.++. ++++.|...++||||-.++.+.
T Consensus 110 ~~~~~~~~~~~~~~~~~vtk~-~~~v~~~~~~~~~~~~A~~~a~~~~gPv~i~iP~Dv~ 167 (535)
T TIGR03394 110 LHHQGRTLDSQFQVFKEVTCD-QAVLDDPATAPAEIARVLGSARELSRPVYLEIPRDMV 167 (535)
T ss_pred eEeeccchHHHHHhhhhheEE-EEEeCChHHhHHHHHHHHHHHHHCCCCEEEEechhhc
Confidence 22232 2 2677766432 22234444444 4555555567899998776543
No 117
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=91.02 E-value=3.8 Score=35.54 Aligned_cols=111 Identities=21% Similarity=0.166 Sum_probs=63.6
Q ss_pred CCceeechh-h-HHHHHHHHHHHhccC-CeeEEecccccH-HHHHHHHHHHHHhhccccCCCCccCCEEEEeC-CCCCC-
Q 020510 83 PERVLDTPI-T-EAGFTGIGVGAAYYG-LKPVVEFMTFNF-SMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAA- 156 (325)
Q Consensus 83 p~R~i~~GI-a-E~~~vg~A~GlA~~G-~~p~v~~~~~~f-~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G~~~- 156 (325)
|.+|+..+- . =-..++.|.|++++. -+++++.. .+. .+.....+-. ++. .++|++++.. ++.++
T Consensus 40 ~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~-GDG~f~~~~~eL~t-a~~--------~~lpi~ivV~nN~~~~~ 109 (186)
T cd02015 40 PRSWLTSGGLGTMGFGLPAAIGAKVARPDKTVICID-GDGSFQMNIQELAT-AAQ--------YNLPVKIVILNNGSLGM 109 (186)
T ss_pred CCeEEeCCCccchhchHHHHHHHHHhCCCCeEEEEE-cccHHhccHHHHHH-HHH--------hCCCeEEEEEECCccHH
Confidence 788887532 1 122556777777663 35666554 432 2223333433 343 4678766543 22211
Q ss_pred ----------C-CC-CCc-ch-HHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510 157 ----------G-VG-AQH-SH-CYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 157 ----------g-~G-~tH-s~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir 204 (325)
+ .. ... .. .+..+.+++ |+.-....+..|+...++.+++.++|++|-
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 170 (186)
T cd02015 110 VRQWQELFYEGRYSHTTLDSNPDFVKLAEAY-GIKGLRVEKPEELEAALKEALASDGPVLLD 170 (186)
T ss_pred HHHHHHHHcCCceeeccCCCCCCHHHHHHHC-CCceEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 00 111 11 223566665 667777788999999999999988999984
No 118
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=90.54 E-value=9.7 Score=34.59 Aligned_cols=37 Identities=22% Similarity=0.110 Sum_probs=28.9
Q ss_pred HHHhcC--CCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510 168 AWYASV--PGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 168 a~~~~i--P~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir 204 (325)
.+.++. +.+..+...+++|+..+++.+++.++|++|-
T Consensus 158 ~iA~a~G~~~~~~~~v~~~~el~~al~~a~~~~gP~lIe 196 (235)
T cd03376 158 LIMAAHNIPYVATASVAYPEDLYKKVKKALSIEGPAYIH 196 (235)
T ss_pred HHHHHcCCcEEEEEcCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 455554 3443467899999999999999999999884
No 119
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=90.42 E-value=11 Score=38.76 Aligned_cols=113 Identities=20% Similarity=0.081 Sum_probs=70.5
Q ss_pred ceeechhhHHHHHHHHHHHhcc-CCeeEEe-cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCC
Q 020510 85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVE-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA 160 (325)
Q Consensus 85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~-~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~ 160 (325)
|+|.+ -.|++++.+|.|.|+. |...++. +..+.+++ +.--+.+ |+ ...+||+++....... +.+.
T Consensus 44 ~~v~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n-~l~gia~--A~-------~~~~Pvl~i~G~~~~~~~~~~~ 112 (572)
T PRK08979 44 EHILV-RHEQAAVHMADGYARATGKVGVVLVTSGPGATN-TITGIAT--AY-------MDSIPMVVLSGQVPSNLIGNDA 112 (572)
T ss_pred eEEEe-CcHHHHHHHHHHHHHHhCCCeEEEECCCchHhH-HHHHHHH--Hh-------hcCCCEEEEecCCCccccCCCC
Confidence 67776 8999999999999987 6444433 44444333 4444433 22 2589998876432221 2233
Q ss_pred CcchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHh-----CCCcEEEEeCccc
Q 020510 161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELL 209 (325)
Q Consensus 161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~ir~~~~l 209 (325)
.+.....++++.+-.. .....+++++...++.|++ .++||||-.+..+
T Consensus 113 ~q~~d~~~~~~~itk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 165 (572)
T PRK08979 113 FQECDMIGISRPVVKH-SFLVKDAEDIPEIIKKAFYIASTGRPGPVVIDLPKDC 165 (572)
T ss_pred CcccchhHHhhhceeE-EEecCCHHHHHHHHHHHHHHHhCCCCCcEEEecCHhH
Confidence 2211224788877542 3445578888888888876 2589999876553
No 120
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=89.88 E-value=4.6 Score=41.27 Aligned_cols=113 Identities=14% Similarity=0.072 Sum_probs=70.3
Q ss_pred ceeechhhHHHHHHHHHHHhcc-CCeeEEe-cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCC-
Q 020510 85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVE-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG- 159 (325)
Q Consensus 85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~-~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G- 159 (325)
|++.+ -.|+++..+|-|.|+. |...++. +..+.+++ +.--+.+ |+. .+.||+++....... +.+
T Consensus 42 ~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N-~~~gia~--A~~-------~~~Pvl~I~G~~~~~~~~~~~ 110 (554)
T TIGR03254 42 RYIGF-RHEQSAGYAAAAAGFLTQKPGVCLTVSAPGFLN-GLTALAN--ATT-------NCFPMIMISGSSERHIVDLQQ 110 (554)
T ss_pred cEEEe-CCHHHHHHHHHHHHHHhCCCEEEEEccCccHHh-HHHHHHH--HHh-------cCCCEEEEEccCCccccccCC
Confidence 67775 8999999999999987 5433333 33444433 4444543 332 589988875332211 111
Q ss_pred CCcchH--HHHHHhcCCCcEEEeeCCHHHHHHHHHHhHh-----CCCcEEEEeCcccc
Q 020510 160 AQHSHC--YAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELLY 210 (325)
Q Consensus 160 ~tHs~~--~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~ir~~~~l~ 210 (325)
..+ |. ..++++.+-. ..+...++.++...++.|++ .++||||-.+..+.
T Consensus 111 ~~~-q~~d~~~~~~~vtk-~~~~v~~~~~~~~~i~rA~~~A~~~~pGPV~l~iP~Dv~ 166 (554)
T TIGR03254 111 GDY-EEMDQLAAAKPFAK-AAYRVLRAEDIGIGIARAIRTAVSGRPGGVYLDLPAAVL 166 (554)
T ss_pred CCc-chhhHHHHhhhhhe-eEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHHHh
Confidence 123 43 2488888754 35566678888777777765 25789998776543
No 121
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=89.75 E-value=5.2 Score=35.36 Aligned_cols=37 Identities=24% Similarity=0.207 Sum_probs=30.6
Q ss_pred HHHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510 167 AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 167 ~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir 204 (325)
.++.+++ |+..+...+++|+...++.+++.++|++|-
T Consensus 144 ~~~A~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lIe 180 (205)
T cd02003 144 AANARSL-GARVEKVKTIEELKAALAKAKASDRTTVIV 180 (205)
T ss_pred HHHHHhC-CCEEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 3566665 677777899999999999999989999884
No 122
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=89.71 E-value=11 Score=32.39 Aligned_cols=112 Identities=19% Similarity=0.219 Sum_probs=64.5
Q ss_pred HhCCCceeechh-hHH-HHHHHHHHHhccC-CeeEEeccccc--HHHHHHHHHHHHHhhccccCCCCccCCEEEEeC-CC
Q 020510 80 KYGPERVLDTPI-TEA-GFTGIGVGAAYYG-LKPVVEFMTFN--FSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NG 153 (325)
Q Consensus 80 ~~gp~R~i~~GI-aE~-~~vg~A~GlA~~G-~~p~v~~~~~~--f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G 153 (325)
+. |.+|+..+. .=. .+++.|.|++++. .++++++. .+ |++-..| +.+ +.. .++|++++.- ++
T Consensus 39 ~~-~~~~~~~~~~g~mG~~~~~aiGa~~a~~~~~vv~i~-GDG~f~~~~~e-l~t-~~~--------~~lp~~~iv~NN~ 106 (178)
T cd02014 39 NG-KQRFILSGLLATMGNGLPGAIAAKLAYPDRQVIALS-GDGGFAMLMGD-LIT-AVK--------YNLPVIVVVFNNS 106 (178)
T ss_pred CC-CCcEEcCCCCchhhhHHHHHHHHHHhCCCCcEEEEE-cchHHHhhHHH-HHH-HHH--------hCCCcEEEEEECC
Confidence 44 678887543 221 2555677776654 35555554 43 2333333 433 343 4677655532 22
Q ss_pred -CCC--------C---CCCC-cchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510 154 -AAA--------G---VGAQ-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 154 -~~~--------g---~G~t-Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir 204 (325)
... + .+.. +...+..+..+. |++.+...++.|++..++.+++.++|++|-
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~~l~~a~~~~~p~lie 169 (178)
T cd02014 107 DLGFIKWEQEVMGQPEFGVDLPNPDFAKIAEAM-GIKGIRVEDPDELEAALDEALAADGPVVID 169 (178)
T ss_pred chhHHHHHHHHhcCCceeccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 211 1 1111 112334566666 788888999999999999999988999884
No 123
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=89.70 E-value=4.1 Score=42.28 Aligned_cols=114 Identities=17% Similarity=0.065 Sum_probs=70.4
Q ss_pred ceeechhhHHHHHHHHHHHhcc-CCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCCC
Q 020510 85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQ 161 (325)
Q Consensus 85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~t 161 (325)
|||.+ -.|++++.+|.|.|+. |...++.+.+...+.-++--+.+ |+. -++||+++....... +.+..
T Consensus 62 ~~i~~-rhE~~Aa~aA~gyar~tgk~gv~~~t~GPG~~n~l~gl~~--A~~-------d~~Pvl~i~G~~~~~~~~~~~~ 131 (616)
T PRK07418 62 KHILV-RHEQGAAHAADGYARATGKVGVCFGTSGPGATNLVTGIAT--AQM-------DSVPMVVITGQVPRPAIGTDAF 131 (616)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHHH--HHh-------cCCCEEEEecCCCccccCCCCc
Confidence 78886 9999999999999977 54444333323334434444433 332 589999886432222 22222
Q ss_pred cchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHh----C-CCcEEEEeCccc
Q 020510 162 HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELL 209 (325)
Q Consensus 162 Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~-~~Pv~ir~~~~l 209 (325)
+......+++.+-- -.....+++++..+++.|++ . ++||||..+..+
T Consensus 132 Qe~d~~~~~~~vtk-~~~~v~~~~~i~~~l~~A~~~A~~~~~GPv~l~iP~Dv 183 (616)
T PRK07418 132 QETDIFGITLPIVK-HSYVVRDPSDMARIVAEAFHIASSGRPGPVLIDIPKDV 183 (616)
T ss_pred ccccHHHHhhhcce-eEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecchhh
Confidence 21122378876642 23346788888888888777 2 489999877654
No 124
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=89.53 E-value=8.5 Score=33.44 Aligned_cols=143 Identities=17% Similarity=0.150 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHH-HhCCCceeechhhHHHHHHHHHHHhccCCeeEEeccccc
Q 020510 40 REALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLE-KYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFN 118 (325)
Q Consensus 40 ~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~-~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~~~~ 118 (325)
|+++.++|.+.+. ..+++. |.+.+. ..+.. ...|.+|+..|--=. .++.|.|++++--+|++++. .+
T Consensus 1 ~~~~~~~l~~~l~--d~iiv~--d~G~~~------~~~~~~~~~~~~~~~~gsmG~-~lpaAiGa~la~~~~Vv~i~-GD 68 (181)
T TIGR03846 1 RIDAIRAIASYLE--DELVVS--NIGVPS------KELYAIRDRPLNFYMLGSMGL-ASSIGLGLALATDRTVIVID-GD 68 (181)
T ss_pred CHHHHHHHHHhCC--CCEEEe--cCCHhH------HHHHhhhcCCCCeeecccccc-HHHHHHHHHHcCCCcEEEEE-cc
Confidence 4567777777773 344443 444321 12222 122778886432111 23477777765456777665 44
Q ss_pred H-HHHHHHHHHHHHhhccccCCCCcc-CCEEEEeC-CCCCCCCC-----CCcchHHHHHHhcCCCcEEEe-eCCHHHHHH
Q 020510 119 F-SMQAIDHIINSAAKSNYMSSGQIS-VPIVFRGP-NGAAAGVG-----AQHSHCYAAWYASVPGLKVLS-PYSSEDARG 189 (325)
Q Consensus 119 f-~~ra~dqi~~~~a~~~~~~~~~~~-~pvv~~~~-~G~~~g~G-----~tHs~~~~a~~~~iP~~~V~~-P~d~~e~~~ 189 (325)
. ++.....+- .++. .+ .|++++.- ++.++-.+ .++.-.+.++.+++ |+.-.. ..+++|+..
T Consensus 69 G~f~m~~~el~-ta~~--------~~~~pv~~vV~NN~~yg~~~~q~~~~~~~~d~~~lA~a~-G~~~~~~v~~~~~l~~ 138 (181)
T TIGR03846 69 GSLLMNLGVLP-TIAA--------ESPKNLILVILDNGAYGSTGNQPTPASRRTDLELVAKAA-GIRNVEKVADEEELRD 138 (181)
T ss_pred hHHHhhhhHHH-HHHH--------hCCCCeEEEEEeCCccccccCcCCCCCCCCCHHHHHHHC-CCCeEEEeCCHHHHHH
Confidence 3 232333332 2332 34 47655542 22221111 11111234566655 455455 789999999
Q ss_pred HHHHhHhCCCcEEEEe
Q 020510 190 LLKAAIRDPDPVVFLE 205 (325)
Q Consensus 190 ~l~~a~~~~~Pv~ir~ 205 (325)
.++ +++.++|.+|-.
T Consensus 139 al~-a~~~~~p~li~v 153 (181)
T TIGR03846 139 ALK-ALAMKGPTFIHV 153 (181)
T ss_pred HHH-HHcCCCCEEEEE
Confidence 997 888889998853
No 125
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=89.35 E-value=4.8 Score=41.50 Aligned_cols=113 Identities=16% Similarity=0.038 Sum_probs=68.8
Q ss_pred ceeechhhHHHHHHHHHHHhcc-CCeeEE-ecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCC--CCC
Q 020510 85 RVLDTPITEAGFTGIGVGAAYY-GLKPVV-EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAG--VGA 160 (325)
Q Consensus 85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~v-~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g--~G~ 160 (325)
||+.+ ..|+++..+|.|.|+. |...++ .+..+.. .-++--|.+ |+. .+.||+++........ .+.
T Consensus 53 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~-~N~l~gl~~--A~~-------~~~Pvl~I~G~~~~~~~~~~~ 121 (585)
T CHL00099 53 KHILV-RHEQGAAHAADGYARSTGKVGVCFATSGPGA-TNLVTGIAT--AQM-------DSVPLLVITGQVGRAFIGTDA 121 (585)
T ss_pred eEEEe-cCHHHHHHHHHHHHHhcCCcEEEEECCCCcH-HHHHHHHHH--Hhh-------cCCCEEEEecCCCccccCCCC
Confidence 56774 8999999999999987 544343 3444433 334444433 332 6899988864322222 222
Q ss_pred CcchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhC-----CCcEEEEeCccc
Q 020510 161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELL 209 (325)
Q Consensus 161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-----~~Pv~ir~~~~l 209 (325)
.+.....++++.+-. -.....+++++..+++.|++. ++||||..+..+
T Consensus 122 ~q~~d~~~~~~~~tk-~~~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~Dv 174 (585)
T CHL00099 122 FQEVDIFGITLPIVK-HSYVVRDARDISRIVAEAFYIAKHGRPGPVLIDIPKDV 174 (585)
T ss_pred ccccchhhhhcCcee-EEEEeCCHHHHHHHHHHHHHHHccCCCCeEEEecChhh
Confidence 221122367776532 244556888888888887762 479999877554
No 126
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=89.15 E-value=4 Score=42.14 Aligned_cols=111 Identities=16% Similarity=0.061 Sum_probs=69.6
Q ss_pred ceeechhhHHHHHHHHHHHhcc-CCeeEE-ecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCC
Q 020510 85 RVLDTPITEAGFTGIGVGAAYY-GLKPVV-EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA 160 (325)
Q Consensus 85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~v-~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~ 160 (325)
||+.+ ..|++++.+|.|.|+. |...++ .+..+.+ .-++--|.+ |+. .++||+++...-... +.+.
T Consensus 40 ~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GPG~-~n~l~~i~~--A~~-------~~~Pvl~I~G~~~~~~~~~~~ 108 (586)
T PRK06276 40 IHILT-RHEQAAAHAADGYARASGKVGVCVATSGPGA-TNLVTGIAT--AYA-------DSSPVIALTGQVPTKLIGNDA 108 (586)
T ss_pred cEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccH-HHHHHHHHH--HHh-------cCCCEEEEeCCCCccccCCCC
Confidence 67776 7999999999999987 543333 3444443 334555544 222 689998876432221 2222
Q ss_pred CcchH-H-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHhC-----CCcEEEEeCccc
Q 020510 161 QHSHC-Y-AAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELL 209 (325)
Q Consensus 161 tHs~~-~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-----~~Pv~ir~~~~l 209 (325)
+ |. + .++++.+-.. .+.-.+++++...++.|++. ++||||-.+..+
T Consensus 109 -~-q~~d~~~l~~~~tk~-s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv 161 (586)
T PRK06276 109 -F-QEIDALGIFMPITKH-NFQIKKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKDV 161 (586)
T ss_pred -C-ccccHhhHHhhhcce-EEecCCHHHHHHHHHHHHHHhcCCCCCcEEEEcChhH
Confidence 3 32 2 3788877543 33446777888778777763 589999877554
No 127
>PRK06154 hypothetical protein; Provisional
Probab=88.95 E-value=8.4 Score=39.60 Aligned_cols=149 Identities=19% Similarity=0.103 Sum_probs=86.7
Q ss_pred ccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-C-CeeEE
Q 020510 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-G-LKPVV 112 (325)
Q Consensus 35 ~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~-G-~~p~v 112 (325)
+.++..+++.+.|.++ +-+.|+--+ . . .+.+.+.+ - .=|||.+ -.|++++.+|.|.|+. | -+|-+
T Consensus 18 ~~~~~a~~l~~~L~~~---GV~~vFGip--~----~-~l~dal~~-~-~i~~i~~-rhE~~A~~mAdgyar~t~g~~~gv 84 (565)
T PRK06154 18 KTMKVAEAVAEILKEE---GVELLFGFP--V----N-ELFDAAAA-A-GIRPVIA-RTERVAVHMADGYARATSGERVGV 84 (565)
T ss_pred CcccHHHHHHHHHHHc---CCCEEEeCc--C----H-HHHHHHHh-c-CCeEEee-CcHHHHHHHHHHHHHhcCCCCCEE
Confidence 4455567777766653 445555433 1 1 22344533 2 2477775 8999999999999986 3 34433
Q ss_pred --ecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCCCcchHHHHHHhcCCCcEEEeeCCHHHHH
Q 020510 113 --EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQHSHCYAAWYASVPGLKVLSPYSSEDAR 188 (325)
Q Consensus 113 --~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~ 188 (325)
.+..+.+++ +.--+.+ |+. .+.||+++....... +.+..+.+ ..+++.+-. -.....+++++.
T Consensus 85 ~~~t~GPG~~N-~~~gla~--A~~-------~~~Pvl~i~G~~~~~~~~~~~~~d~--~~~~~~vtk-~~~~v~~~~~~~ 151 (565)
T PRK06154 85 FAVQYGPGAEN-AFGGVAQ--AYG-------DSVPVLFLPTGYPRGSTDVAPNFES--LRNYRHITK-WCEQVTLPDEVP 151 (565)
T ss_pred EEECCCccHHH-HHHHHHH--Hhh-------cCCCEEEEeCCCCcccccCCCCcch--hhhHhhcce-eEEECCCHHHHH
Confidence 345454433 4444433 332 589999885422111 12222312 367777654 345667888888
Q ss_pred HHHHHhHh-----CCCcEEEEeCccc
Q 020510 189 GLLKAAIR-----DPDPVVFLENELL 209 (325)
Q Consensus 189 ~~l~~a~~-----~~~Pv~ir~~~~l 209 (325)
..++.|++ .++||||-.+..+
T Consensus 152 ~~i~~A~~~A~s~~~GPV~l~iP~Dv 177 (565)
T PRK06154 152 ELMRRAFTRLRNGRPGPVVLELPVDV 177 (565)
T ss_pred HHHHHHHHHHhcCCCceEEEecchHH
Confidence 77777776 2589999877554
No 128
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=88.89 E-value=4.3 Score=33.99 Aligned_cols=99 Identities=20% Similarity=0.183 Sum_probs=57.1
Q ss_pred HHHHHHHHHhccC-CeeEEecccccH-HHHHHHHHHHHHhhccccCCCCccCCEEEEeC-CCCCCCCC------------
Q 020510 95 GFTGIGVGAAYYG-LKPVVEFMTFNF-SMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAGVG------------ 159 (325)
Q Consensus 95 ~~vg~A~GlA~~G-~~p~v~~~~~~f-~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G~~~g~G------------ 159 (325)
..++.|.|+++.. -++++++. .+. ++..++.+.. +.. .++|++++.. ++...-.+
T Consensus 50 ~~~~~a~Gaa~a~~~~~vv~~~-GDG~~~~~~~~l~t-a~~--------~~~~~~~iv~nN~~~~~~~~~~~~~~~~~~~ 119 (168)
T cd00568 50 YGLPAAIGAALAAPDRPVVCIA-GDGGFMMTGQELAT-AVR--------YGLPVIVVVFNNGGYGTIRMHQEAFYGGRVS 119 (168)
T ss_pred hhHHHHHHHHHhCCCCcEEEEE-cCcHHhccHHHHHH-HHH--------cCCCcEEEEEECCccHHHHHHHHHHcCCCcc
Confidence 3445777777664 24445444 443 2234454433 332 4677666543 23221000
Q ss_pred -CC-cchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510 160 -AQ-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 160 -~t-Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir 204 (325)
.. +...+.+++++. |+......++.|+...++++.+.++|++|.
T Consensus 120 ~~~~~~~d~~~~a~~~-G~~~~~v~~~~~l~~a~~~a~~~~~p~~i~ 165 (168)
T cd00568 120 GTDLSNPDFAALAEAY-GAKGVRVEDPEDLEAALAEALAAGGPALIE 165 (168)
T ss_pred cccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 11 111334666665 777888889999999999999888999884
No 129
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=88.75 E-value=5.3 Score=41.08 Aligned_cols=152 Identities=18% Similarity=0.072 Sum_probs=85.6
Q ss_pred ccccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEe-
Q 020510 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVE- 113 (325)
Q Consensus 35 ~~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~- 113 (325)
++++..+++.+.|.++ +-+.|+--. . .. .+...+.+ - .=+++.+ ..|+++..+|.|.|+..-+|-++
T Consensus 12 ~~~~~a~~i~~~L~~~---GV~~vFG~~-~----~~-~~~~~~~~-~-~i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~ 79 (578)
T PRK06112 12 LNGTVAHAIARALKRH---GVEQIFGQS-L----PS-ALFLAAEA-I-GIRQIAY-RTENAGGAMADGYARVSGKVAVVT 79 (578)
T ss_pred cCcCHHHHHHHHHHHC---CCCEEeecc-c----ch-HhHHHHhh-c-CCcEEEe-ccHHHHHHHHHHHHHHhCCCEEEE
Confidence 4556677777777653 444444211 1 11 01122221 1 2367776 79999999999999874344333
Q ss_pred -cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCC-CCcchHH--HHHHhcCCCcEEEeeCCHHHHHH
Q 020510 114 -FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVG-AQHSHCY--AAWYASVPGLKVLSPYSSEDARG 189 (325)
Q Consensus 114 -~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G-~tHs~~~--~a~~~~iP~~~V~~P~d~~e~~~ 189 (325)
+..+ .+.-++--|.+ |+. .++||+++..+......+ ..+ |.. ..+++.+-- ......+++++..
T Consensus 80 ~t~Gp-G~~N~~~gl~~--A~~-------~~~Pvl~I~G~~~~~~~~~~~~-Q~~d~~~l~~~vtk-~~~~v~~~~~~~~ 147 (578)
T PRK06112 80 AQNGP-AATLLVAPLAE--ALK-------ASVPIVALVQDVNRDQTDRNAF-QELDHIALFQSCTK-WVRRVTVAERIDD 147 (578)
T ss_pred eCCCC-cHHHHHHHHHH--Hhh-------cCCCEEEEecCCccccCCCCCc-cccChhhhhccccc-eEEEeCCHHHHHH
Confidence 3333 33334444443 332 689998876432222111 123 332 478888864 3445667777777
Q ss_pred HHHHhHh----C-CCcEEEEeCcccc
Q 020510 190 LLKAAIR----D-PDPVVFLENELLY 210 (325)
Q Consensus 190 ~l~~a~~----~-~~Pv~ir~~~~l~ 210 (325)
.++.|++ . ++||||-.+..+.
T Consensus 148 ~i~~A~~~A~~~~~GPv~l~iP~Dv~ 173 (578)
T PRK06112 148 YVDQAFTAATSGRPGPVVLLLPADLL 173 (578)
T ss_pred HHHHHHHHHhhCCCCcEEEEcCHhHh
Confidence 7777765 2 4899998775543
No 130
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=88.51 E-value=2.6 Score=37.39 Aligned_cols=73 Identities=22% Similarity=0.304 Sum_probs=50.2
Q ss_pred CcEEEEEechh-HHHHHHHHHHHHhc--CCcEEEEEeeec---c-----C--CCHHHHHHHHhCCCeEEEEecCCCCCCH
Q 020510 239 KDVTITAFSKI-VGLSLKAAEILAKE--GISAEVINLRSI---R-----P--LDRSTINASVRKTNRLVTVEEGFPQHGV 305 (325)
Q Consensus 239 ~dv~Iia~G~~-~~~a~~Aa~~L~~~--Gi~~~Vi~~~~l---~-----P--~d~~~l~~~~~~~~~vvvvEe~~~~GGl 305 (325)
.||++.++|.. +.+++.|++.|++. +++++|||+--| . | ++.+.+.++.-+.+.|++. .-|.
T Consensus 35 PDVVlA~aGd~pT~E~lAA~~lLr~~~P~lkiRvVNVvDLm~L~~~~~hPhglsd~~Fd~lFT~DkPViFa-----fHGY 109 (203)
T PF09363_consen 35 PDVVLACAGDVPTLEVLAAASLLREHFPELKIRVVNVVDLMKLQPPSEHPHGLSDEEFDALFTKDKPVIFA-----FHGY 109 (203)
T ss_dssp -SEEEEEESHHHHHHHHHHHHHHHHT--T--EEEEEESBGGGGS-TTT-TTS--HHHHHHHH-SSS-EEEE-----ESSE
T ss_pred CCEEEEecCchhhHHHHHHHHHHHHhccCceEEEEEEeEccccCCCCCCCCcCCHHHHHHhcCCCCCEEEE-----cCCC
Confidence 69999999955 47999999999998 899988887655 2 2 5667788888777766654 3567
Q ss_pred HHHHHHHHcCC
Q 020510 306 GAEIWCAFFPP 316 (325)
Q Consensus 306 g~~v~~~l~~~ 316 (325)
-+.|-..+...
T Consensus 110 p~~i~~L~~~R 120 (203)
T PF09363_consen 110 PWLIHRLLFGR 120 (203)
T ss_dssp HHHHHHHTTTS
T ss_pred HHHHHHHhcCC
Confidence 77777766543
No 131
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=88.39 E-value=9.3 Score=35.86 Aligned_cols=142 Identities=17% Similarity=0.076 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeech-h--hHHHHHHHHHHHhccC-CeeEEec
Q 020510 39 VREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTP-I--TEAGFTGIGVGAAYYG-LKPVVEF 114 (325)
Q Consensus 39 ~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~G-I--aE~~~vg~A~GlA~~G-~~p~v~~ 114 (325)
.-.++.++|.++....++.+++ .|++-++ .+ + +|++.+ . .=-.++.+|.|++++. -++++++
T Consensus 28 il~~l~~al~~l~~~p~d~vvv-sdiGc~~-----------~~-~-~~~~~~~~~g~mG~alpaAiGaklA~Pd~~VV~i 93 (286)
T PRK11867 28 ILAALQRALAELGLDPENVAVV-SGIGCSG-----------RL-P-GYINTYGFHTIHGRALAIATGLKLANPDLTVIVV 93 (286)
T ss_pred HHHHHHHHHHHhCCCCCcEEEE-eCCcccc-----------cc-C-ccccccchhhhhhcHHHHHHHHHHhCCCCcEEEE
Confidence 5566677776665555566555 4666321 01 2 344431 1 1133455777777663 3566655
Q ss_pred ccccH--HHHHHHHHHHHHhhccccCCCCccCCEEEEeC-C---CCCCC-CCC----------C-cc-----hHHHHHHh
Q 020510 115 MTFNF--SMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N---GAAAG-VGA----------Q-HS-----HCYAAWYA 171 (325)
Q Consensus 115 ~~~~f--~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~---G~~~g-~G~----------t-Hs-----~~~~a~~~ 171 (325)
. .+. ++-....+.+ ++. .++|++++.. + |.+.+ ..+ + +. -...++..
T Consensus 94 ~-GDG~~f~mg~~eL~t-A~r--------~nl~i~vIV~NN~~yGmt~~q~s~tt~~g~~~~~~~~g~~~~~~d~~~lA~ 163 (286)
T PRK11867 94 T-GDGDALAIGGNHFIH-ALR--------RNIDITYILFNNQIYGLTKGQYSPTSPVGFVTKTTPYGSIEPPFNPVELAL 163 (286)
T ss_pred e-CccHHHhCCHHHHHH-HHH--------hCCCcEEEEEeCHHHhhhcCccCCCCCCCcccccccCCCCCCCCCHHHHHH
Confidence 4 444 3444455544 333 4677655532 2 22211 110 0 00 11234444
Q ss_pred cCC--CcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510 172 SVP--GLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 172 ~iP--~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir 204 (325)
+.. .+......+++|+..+++.+++.++|++|-
T Consensus 164 a~Ga~~va~~~~~~~~el~~al~~Al~~~Gp~lIe 198 (286)
T PRK11867 164 GAGATFVARGFDSDVKQLTELIKAAINHKGFSFVE 198 (286)
T ss_pred HCCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 443 333346789999999999999999999985
No 132
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=88.13 E-value=4 Score=38.64 Aligned_cols=35 Identities=23% Similarity=-0.029 Sum_probs=31.1
Q ss_pred hcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEEe
Q 020510 171 ASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (325)
Q Consensus 171 ~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir~ 205 (325)
..+|-+...+|.|+.++...++.|++.++|.+|-.
T Consensus 170 ~g~~yVA~~~~~~~~~~~~~i~~A~~~~Gps~I~~ 204 (300)
T PRK11864 170 HKVPYVATASIAYPEDFIRKLKKAKEIRGFKFIHL 204 (300)
T ss_pred cCCCEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 45678889999999999999999999999999853
No 133
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=88.07 E-value=7.1 Score=36.93 Aligned_cols=34 Identities=21% Similarity=0.100 Sum_probs=30.8
Q ss_pred hcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510 171 ASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 171 ~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir 204 (325)
..+|-+...+|+++.|+...++.|.+.++|.+|.
T Consensus 174 ~g~~YVA~~~~~~~~~l~~~i~~A~~~~Gps~I~ 207 (299)
T PRK11865 174 HGIPYVATASIGYPEDFMEKVKKAKEVEGPAYIQ 207 (299)
T ss_pred cCCCEEEEEeCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 5677788899999999999999999999999985
No 134
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=87.92 E-value=6.1 Score=34.67 Aligned_cols=111 Identities=19% Similarity=0.127 Sum_probs=64.2
Q ss_pred CCceeechh-hH-HHHHHHHHHHhccC-CeeEEecccccH-HHHHHHHHHHHHhhccccCCCCccCCEEEEeC-C-CCCC
Q 020510 83 PERVLDTPI-TE-AGFTGIGVGAAYYG-LKPVVEFMTFNF-SMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N-GAAA 156 (325)
Q Consensus 83 p~R~i~~GI-aE-~~~vg~A~GlA~~G-~~p~v~~~~~~f-~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~-G~~~ 156 (325)
|.+|+..+- .= -..+.+|.|++++. -++++++. .+. .+.....+-. +.. .++|++++.- + +...
T Consensus 43 ~~~~~~~~~~g~mG~~lpaaiGa~la~p~r~vv~i~-GDG~f~m~~~eL~T-a~~--------~~lpvi~vV~NN~~yg~ 112 (196)
T cd02013 43 PRSFIAPLSFGNCGYALPAIIGAKAAAPDRPVVAIA-GDGAWGMSMMEIMT-AVR--------HKLPVTAVVFRNRQWGA 112 (196)
T ss_pred CCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEEEE-cchHHhccHHHHHH-HHH--------hCCCeEEEEEECchhHH
Confidence 788886421 11 23556777877653 46666665 432 2223344433 332 4688766642 2 2211
Q ss_pred -C------CC-----CCc-chHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHh---CCCcEEEE
Q 020510 157 -G------VG-----AQH-SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR---DPDPVVFL 204 (325)
Q Consensus 157 -g------~G-----~tH-s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~---~~~Pv~ir 204 (325)
. .+ ..+ .-.+..+.+++ |+.-+.-.++.|+...++++++ .++|++|-
T Consensus 113 ~~~~q~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~p~lie 175 (196)
T cd02013 113 EKKNQVDFYNNRFVGTELESESFAKIAEAC-GAKGITVDKPEDVGPALQKAIAMMAEGKTTVIE 175 (196)
T ss_pred HHHHHHHHcCCCcccccCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 0 01 111 11223556655 6777788899999999999998 78999985
No 135
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=87.89 E-value=11 Score=38.76 Aligned_cols=113 Identities=16% Similarity=0.098 Sum_probs=66.8
Q ss_pred ceeechhhHHHHHHHHHHHhcc-CCee-EEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCC--CCCCC
Q 020510 85 RVLDTPITEAGFTGIGVGAAYY-GLKP-VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGA 160 (325)
Q Consensus 85 R~i~~GIaE~~~vg~A~GlA~~-G~~p-~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~--~g~G~ 160 (325)
||+.+ ..|+++..+|-|.|+. |... .+.|..+ .+.-++--|.+ |+. ..+||+++..+... .+.|.
T Consensus 49 ~~v~~-~hE~~A~~aAdgyar~tg~~~v~~vt~Gp-G~~N~l~~i~~--A~~-------~~~Pvl~IsG~~~~~~~~~~~ 117 (568)
T PRK07449 49 RLHTH-FDERSAGFLALGLAKASKRPVAVIVTSGT-AVANLYPAVIE--AGL-------TGVPLIVLTADRPPELRDCGA 117 (568)
T ss_pred EEEee-cCcccHHHHHHHHHHhhCCCEEEEECCcc-HHHhhhHHHHH--Hhh-------cCCcEEEEECCCCHHHhcCCC
Confidence 67775 8999999999999977 4433 3445544 44445555544 332 68999988643222 23333
Q ss_pred CcchHHHHHHhcCCCcEEEeeCCHH-----HHHHHHHHhHh----CCCcEEEEeCcc
Q 020510 161 QHSHCYAAWYASVPGLKVLSPYSSE-----DARGLLKAAIR----DPDPVVFLENEL 208 (325)
Q Consensus 161 tHs~~~~a~~~~iP~~~V~~P~d~~-----e~~~~l~~a~~----~~~Pv~ir~~~~ 208 (325)
.|.....++++.+-...+-.|.+.. .+..+++.+.. ..+||||-.+..
T Consensus 118 ~q~~d~~~~~~~~t~~~v~~~~~~~~~~~~~~~~~~~a~~~a~~~~~GPV~i~iP~D 174 (568)
T PRK07449 118 NQAIDQLGLFGSYPFTSLALPEPTQDILAYWLVTTIDAALAAQTLQAGPVHINCPFR 174 (568)
T ss_pred CceecHhhHhhhhhhhccCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCEEEeCCCC
Confidence 3322224788877655555565511 13345555333 368999986654
No 136
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=87.55 E-value=7.9 Score=39.76 Aligned_cols=115 Identities=12% Similarity=0.039 Sum_probs=71.3
Q ss_pred CceeechhhHHHHHHHHHHHhcc-CCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCC-
Q 020510 84 ERVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG- 159 (325)
Q Consensus 84 ~R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G- 159 (325)
=|++.+ -.|+++..+|.|.|+. |...++.+.+...+.-+.--|.+ |+. .++||+++....... +.+
T Consensus 48 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gl~~--A~~-------~~~Pvl~I~G~~~~~~~~~~~ 117 (569)
T PRK09259 48 IRYIGF-RHEQSAGNAAAAAGFLTQKPGVCLTVSAPGFLNGLTALAN--ATT-------NCFPMIMISGSSEREIVDLQQ 117 (569)
T ss_pred CCEEee-CCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHH--HHh-------cCCCEEEEEccCCcccccccC
Confidence 367775 8999999999999988 54444433323334445555544 322 589998875432211 111
Q ss_pred CCcchH-H-HHHHhcCCCcEEEeeCCHHHHHHHHHHhHhC-----CCcEEEEeCcccc
Q 020510 160 AQHSHC-Y-AAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELLY 210 (325)
Q Consensus 160 ~tHs~~-~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-----~~Pv~ir~~~~l~ 210 (325)
.++ |. + ..+++.+-. ..+...++.++...++.|++. ++||||-.++.+.
T Consensus 118 ~~~-q~~d~~~~~~~~tk-~s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv~ 173 (569)
T PRK09259 118 GDY-EELDQLNAAKPFCK-AAFRVNRAEDIGIGVARAIRTAVSGRPGGVYLDLPAKVL 173 (569)
T ss_pred CCc-cccchhhhhhhhee-eeEEcCCHHHHHHHHHHHHHHhhhCCCCcEEEEeCHHHh
Confidence 123 32 2 378888754 345556788888877777762 5899998776543
No 137
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=87.50 E-value=7.9 Score=33.05 Aligned_cols=37 Identities=19% Similarity=0.260 Sum_probs=29.5
Q ss_pred HHHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510 167 AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 167 ~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir 204 (325)
..+.... |+..+...+++|+.+.++.+.+.++|++|-
T Consensus 139 ~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~vi~ 175 (178)
T cd02002 139 AAIAKAF-GVEAERVETPEELDEALREALAEGGPALIE 175 (178)
T ss_pred HHHHHHc-CCceEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 3555555 666777788999999999999988999874
No 138
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=87.33 E-value=13 Score=38.00 Aligned_cols=114 Identities=15% Similarity=0.119 Sum_probs=69.2
Q ss_pred ceeechhhHHHHHHHHHHHhcc-CCeeEEe-cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCC-
Q 020510 85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVE-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG- 159 (325)
Q Consensus 85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~-~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G- 159 (325)
|||.+ -.|++++.+|.|.|+. | +.++. +..+..++ +.--+.+ |+. .++||+++...-... +.+
T Consensus 41 ~~v~~-rhE~~A~~mAdgyar~tg-~gv~~~t~GPG~~n-~~~gla~--A~~-------d~~Pvl~I~G~~~~~~~~~~~ 108 (539)
T TIGR03393 41 CWVGC-ANELNAAYAADGYARCKG-AAALLTTFGVGELS-AINGIAG--SYA-------EHLPVIHIVGAPGTAAQQRGE 108 (539)
T ss_pred cEecc-CCcccHHHHhhhhhhhcC-ceEEEEecCccHHH-HhhHHHH--Hhh-------ccCCEEEEECCCCcchhhcCc
Confidence 56664 8999999999999988 6 56554 44444333 4444443 332 589998875421111 111
Q ss_pred -------C-CcchHHHHHHhcCCCcE-EEeeCC-HHHHHHHHHHhHhCCCcEEEEeCccccC
Q 020510 160 -------A-QHSHCYAAWYASVPGLK-VLSPYS-SEDARGLLKAAIRDPDPVVFLENELLYG 211 (325)
Q Consensus 160 -------~-tHs~~~~a~~~~iP~~~-V~~P~d-~~e~~~~l~~a~~~~~Pv~ir~~~~l~~ 211 (325)
. .+ |....+++.+--.. +..|.+ +.++.++++.|+..++||||-.++.+..
T Consensus 109 ~~~~~~~~~~~-q~~~~~~~~itk~~~~~~~~~~~~~i~~a~~~A~~~~gPv~l~iP~Dv~~ 169 (539)
T TIGR03393 109 LLHHTLGDGDF-RHFYRMAAEVTVAQAVLTEQNATAEIDRVITTALRERRPGYLMLPVDVAA 169 (539)
T ss_pred eeeeecCCCch-HHHHHHhhceEEEEEEeChhhhHHHHHHHHHHHHhcCCCEEEEecccccC
Confidence 0 12 23335555542211 224566 7888889999988889999987766543
No 139
>PLN02573 pyruvate decarboxylase
Probab=86.68 E-value=35 Score=35.22 Aligned_cols=112 Identities=19% Similarity=0.116 Sum_probs=64.9
Q ss_pred ceeechhhHHHHHHHHHHHhcc-CCeeEEe-cccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--C-CC
Q 020510 85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVE-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--G-VG 159 (325)
Q Consensus 85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~-~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g-~G 159 (325)
+||.+ ..|+++..+|-|.|+. | ..++. ++.+..++ +.--+.+ |+. -..||+++...-... + .+
T Consensus 56 ~~i~~-rhE~~A~~mAdgyaR~tg-~gv~~~t~GpG~~n-~~~gla~--A~~-------d~~Pvl~I~G~~~~~~~~~~~ 123 (578)
T PLN02573 56 NLIGC-CNELNAGYAADGYARARG-VGACVVTFTVGGLS-VLNAIAG--AYS-------ENLPVICIVGGPNSNDYGTNR 123 (578)
T ss_pred eEEEe-CCHHHHHHHHHHHHHHhC-CCeEEEecCccHHH-HHHHHHH--HHH-------hCCCEEEEECCCChhhhhcCc
Confidence 56664 8999999999999977 7 55544 44443333 4444443 222 578998886431111 2 22
Q ss_pred CCcc----h---HHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEeCccc
Q 020510 160 AQHS----H---CYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELL 209 (325)
Q Consensus 160 ~tHs----~---~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~ir~~~~l 209 (325)
..|+ + ....+++.+-. ......+++++...++.|++ .++||||-.+..+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~itk-~s~~v~~~~~~~~~l~~A~~~A~~~~gPV~l~iP~Dv 183 (578)
T PLN02573 124 ILHHTIGLPDFSQELRCFQTVTC-YQAVINNLEDAHELIDTAISTALKESKPVYISVSCNL 183 (578)
T ss_pred eeeeecCCCChHHHHHHhhceEE-EEEEeCCHHHHHHHHHHHHHHHHhcCCCEEEEeehhh
Confidence 2231 1 11266766542 23344566666655555554 5689999877654
No 140
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=84.95 E-value=28 Score=32.54 Aligned_cols=143 Identities=12% Similarity=0.001 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCcee-echhhHHHHHHHHHHHhccC-CeeEEeccccc
Q 020510 41 EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVL-DTPITEAGFTGIGVGAAYYG-LKPVVEFMTFN 118 (325)
Q Consensus 41 ~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i-~~GIaE~~~vg~A~GlA~~G-~~p~v~~~~~~ 118 (325)
..+.++|.++....++++++ .|++-++ .+..-+.+++|. -.| .++.+|.|++++- -++++++. .+
T Consensus 29 ~~v~~al~e~~~~~~d~ivv-sdiGc~~-------~~~~~~~~~~~~~~~G----~alPaAiGaklA~Pdr~VV~i~-GD 95 (277)
T PRK09628 29 KSIIRAIDKLGWNMDDVCVV-SGIGCSG-------RFSSYVNCNTVHTTHG----RAVAYATGIKLANPDKHVIVVS-GD 95 (277)
T ss_pred HHHHHHHHHhcCCCCCEEEE-eCcCHHH-------HhhccCCCCceeeccc----cHHHHHHHHHHHCCCCeEEEEE-Cc
Confidence 34557777665344566555 4666321 111122244554 344 5677888877762 35666554 55
Q ss_pred HHHH-HHHHHHHHHhhccccCCCCccCCEEEEeC-C---CCCCC-C------CC-C----c-c--h--HHHHHHhcCCCc
Q 020510 119 FSMQ-AIDHIINSAAKSNYMSSGQISVPIVFRGP-N---GAAAG-V------GA-Q----H-S--H--CYAAWYASVPGL 176 (325)
Q Consensus 119 f~~r-a~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~---G~~~g-~------G~-t----H-s--~--~~~a~~~~iP~~ 176 (325)
.... .-++-...++. .++|++++.. + |...+ . |. + + . . .+..+..+. |.
T Consensus 96 G~f~~~g~~el~ta~r--------~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~~~~~~~~g~~~~~~D~~~lA~a~-G~ 166 (277)
T PRK09628 96 GDGLAIGGNHTIHGCR--------RNIDLNFILINNFIYGLTNSQTSPTTPKGMWTVTAQYGNIDPTFDACKLATAA-GA 166 (277)
T ss_pred hHHHHhhHHHHHHHHH--------hCcCeEEEEEEChHHhcceecccCCCCCCceeeeccCCCcCCCCCHHHHHHHC-CC
Confidence 4321 11222222443 5777666543 2 22211 0 10 0 0 0 0 112444443 43
Q ss_pred EE---EeeCCHHHHHHHHHHhHhCCCcEEEEe
Q 020510 177 KV---LSPYSSEDARGLLKAAIRDPDPVVFLE 205 (325)
Q Consensus 177 ~V---~~P~d~~e~~~~l~~a~~~~~Pv~ir~ 205 (325)
.- ....++.|++.+++.|++.++|++|-.
T Consensus 167 ~~va~~~v~~~~el~~al~~Al~~~Gp~lIeV 198 (277)
T PRK09628 167 SFVARESVIDPQKLEKLLVKGFSHKGFSFFDV 198 (277)
T ss_pred ceEEEEccCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 32 578999999999999999999999853
No 141
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=84.83 E-value=25 Score=30.36 Aligned_cols=141 Identities=16% Similarity=0.133 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHH-HhCCCceeechhhHHHHHHHHHHHhccCCeeEEeccccc
Q 020510 40 REALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLE-KYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFN 118 (325)
Q Consensus 40 ~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~-~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~~~~ 118 (325)
|+++.+.|.+.+. ..+++. |.+... ..+.. ...|.+|+..|.-= ..++.|.|++++..++++++. .+
T Consensus 1 ~~~~~~~l~~~~~--~~~vv~--d~G~~~------~~~~~~~~~~~~~~~~g~mG-~~lp~AiGaala~~~~vv~i~-GD 68 (179)
T cd03372 1 RRDAIKTLIADLK--DELVVS--NIGFPS------KELYAAGDRPLNFYMLGSMG-LASSIGLGLALAQPRKVIVID-GD 68 (179)
T ss_pred CHHHHHHHHHhCC--CCeEEe--CCCHhH------HHHHHccCcccccccccchh-hHHHHHHHHHhcCCCcEEEEE-CC
Confidence 3566677776665 344443 444321 11221 12256776432211 233477777766447777765 44
Q ss_pred H-HHHHHHHHHHHHhhccccCCCCcc-CCEEEE-eCCCCCCCCCC-----CcchHHHHHHhcCCCcEEEeeC-CHHHHHH
Q 020510 119 F-SMQAIDHIINSAAKSNYMSSGQIS-VPIVFR-GPNGAAAGVGA-----QHSHCYAAWYASVPGLKVLSPY-SSEDARG 189 (325)
Q Consensus 119 f-~~ra~dqi~~~~a~~~~~~~~~~~-~pvv~~-~~~G~~~g~G~-----tHs~~~~a~~~~iP~~~V~~P~-d~~e~~~ 189 (325)
. ++.....+-. ++. .+ .|++++ ..++.++-.+. .+...+..+.+++ |+..+... +++|+..
T Consensus 69 G~f~m~~~el~t-a~~--------~~~~~l~vvV~NN~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~~el~~ 138 (179)
T cd03372 69 GSLLMNLGALAT-IAA--------EKPKNLIIVVLDNGAYGSTGNQPTHAGKKTDLEAVAKAC-GLDNVATVASEEAFEK 138 (179)
T ss_pred cHHHhCHHHHHH-HHH--------cCCCCEEEEEEcCccccccCCCCCCCCCCCCHHHHHHHc-CCCeEEecCCHHHHHH
Confidence 3 2222233322 332 23 344443 23322211121 1212334566655 55556666 9999999
Q ss_pred HHHHhHhCCCcEEEE
Q 020510 190 LLKAAIRDPDPVVFL 204 (325)
Q Consensus 190 ~l~~a~~~~~Pv~ir 204 (325)
.++++. ++|.+|-
T Consensus 139 al~~a~--~gp~lIe 151 (179)
T cd03372 139 AVEQAL--DGPSFIH 151 (179)
T ss_pred HHHHhc--CCCEEEE
Confidence 999988 6898874
No 142
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=84.55 E-value=3 Score=35.57 Aligned_cols=55 Identities=16% Similarity=0.131 Sum_probs=42.9
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCCeEEEEec
Q 020510 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEE 298 (325)
Q Consensus 241 v~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe 298 (325)
++||+-|..-....++++.|++.|+.+=.|-+. ..|.+.|...+.+..+|+++++
T Consensus 110 ~vviTdG~s~d~~~~~a~~lr~~gv~i~~vG~~---~~~~~eL~~ias~p~~vf~v~~ 164 (165)
T cd01481 110 LVLITGGKSQDDVERPAVALKRAGIVPFAIGAR---NADLAELQQIAFDPSFVFQVSD 164 (165)
T ss_pred EEEEeCCCCcchHHHHHHHHHHCCcEEEEEeCC---cCCHHHHHHHhCCCccEEEecC
Confidence 456777776677889999999999776555544 5799999988877788998875
No 143
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=84.42 E-value=9.5 Score=39.09 Aligned_cols=110 Identities=21% Similarity=0.204 Sum_probs=65.7
Q ss_pred CCceeechh--hHHHHHHHHHHHhccC-CeeEEeccccc--HHHHHHHHHHHHHhhccccCCCCccCCEEEEeC-CC-CC
Q 020510 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTFN--FSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NG-AA 155 (325)
Q Consensus 83 p~R~i~~GI--aE~~~vg~A~GlA~~G-~~p~v~~~~~~--f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G-~~ 155 (325)
|.+|+..+- +=-..+..|.|++++. -++++++. .+ |.+.+.| +-. +.. .++|++++.- ++ ..
T Consensus 409 ~~~~~~~~~~g~mG~~lpaaiGa~la~~~~~vv~i~-GDGsf~~~~~e-L~t-a~~--------~~lpvi~vV~NN~~~g 477 (564)
T PRK08155 409 PRQWLTSGGLGTMGFGLPAAIGAALANPERKVLCFS-GDGSLMMNIQE-MAT-AAE--------NQLDVKIILMNNEALG 477 (564)
T ss_pred CCeEEeCCCcccccchhHHHHHHHHhCCCCcEEEEE-ccchhhccHHH-HHH-HHH--------hCCCeEEEEEeCCccc
Confidence 678987643 3334666788877664 34555554 33 3333333 433 333 4677655532 22 22
Q ss_pred C---------C---CCCC--cchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510 156 A---------G---VGAQ--HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 156 ~---------g---~G~t--Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir 204 (325)
. + .+.. +.-.+.++.+++ |+.-+...+.+|+...++.+++.++|++|-
T Consensus 478 ~~~~~q~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lIe 539 (564)
T PRK08155 478 LVHQQQSLFYGQRVFAATYPGKINFMQIAAGF-GLETCDLNNEADPQAALQEAINRPGPALIH 539 (564)
T ss_pred ccHHHHHHhcCCCeeeccCCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 1 0 1111 111234667776 788889999999999999999988999985
No 144
>PRK06163 hypothetical protein; Provisional
Probab=83.55 E-value=18 Score=32.04 Aligned_cols=147 Identities=13% Similarity=0.072 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccC-CeeEEecccc
Q 020510 39 VREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG-LKPVVEFMTF 117 (325)
Q Consensus 39 ~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G-~~p~v~~~~~ 117 (325)
.|..+-+.|.+.+.. +++++. |.+... +. .+.-.+.|.+|+..| +=-..+.+|.|++++. -++++++. .
T Consensus 14 ~~~~~i~~l~~~l~~-~~~iv~--D~G~~~--~~---~~~~~~~~~~~~~~G-sMG~glpaAiGaalA~p~r~Vv~i~-G 83 (202)
T PRK06163 14 NRFDLTCRLVAKLKD-EEAVIG--GIGNTN--FD---LWAAGQRPQNFYMLG-SMGLAFPIALGVALAQPKRRVIALE-G 83 (202)
T ss_pred CHHHHHHHHHHhcCC-CCEEEE--CCCccH--HH---HHHhhcCCCCeEeec-ccccHHHHHHHHHHhCCCCeEEEEE-c
Confidence 355556666666643 345443 555211 11 111122367787432 1122334777777663 46666665 4
Q ss_pred cH-HHHHHHHHHHHHhhccccCCCCccCCEEEEeC-C-CCC--CCC--CCCcchHHHHHHhcCCCcE-EEeeCCHHHHHH
Q 020510 118 NF-SMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N-GAA--AGV--GAQHSHCYAAWYASVPGLK-VLSPYSSEDARG 189 (325)
Q Consensus 118 ~f-~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~-G~~--~g~--G~tHs~~~~a~~~~iP~~~-V~~P~d~~e~~~ 189 (325)
+. .+-....+-. ++.. .++|++++.- + +.. .+. ...+.-++..+.+++ |+. -+...+.+|+..
T Consensus 84 DG~f~m~~~eL~T-a~~~-------~~lpi~ivV~NN~~yg~~~~~~~~~~~~~Df~~lA~a~-G~~~~~~v~~~~el~~ 154 (202)
T PRK06163 84 DGSLLMQLGALGT-IAAL-------APKNLTIIVMDNGVYQITGGQPTLTSQTVDVVAIARGA-GLENSHWAADEAHFEA 154 (202)
T ss_pred chHHHHHHHHHHH-HHHh-------cCCCeEEEEEcCCchhhcCCccCCCCCCCCHHHHHHHC-CCceEEEeCCHHHHHH
Confidence 43 2323333322 3221 2456555432 2 222 111 111211334566666 665 567789999999
Q ss_pred HHHHhHhCCCcEEEE
Q 020510 190 LLKAAIRDPDPVVFL 204 (325)
Q Consensus 190 ~l~~a~~~~~Pv~ir 204 (325)
.++.+++.++|++|-
T Consensus 155 al~~a~~~~~p~lIe 169 (202)
T PRK06163 155 LVDQALSGPGPSFIA 169 (202)
T ss_pred HHHHHHhCCCCEEEE
Confidence 999999988999875
No 145
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=83.53 E-value=10 Score=32.63 Aligned_cols=38 Identities=26% Similarity=0.391 Sum_probs=26.0
Q ss_pred HHHHhcC--CCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510 167 AAWYASV--PGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 167 ~a~~~~i--P~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir 204 (325)
..+.+++ +...|..|.+-+++...++.+++.++|.+|.
T Consensus 134 ~~~a~a~G~~~~~v~~~~~l~~~~~al~~a~~~~gp~lI~ 173 (178)
T cd02008 134 EALVRAIGVKRVVVVDPYDLKAIREELKEALAVPGVSVII 173 (178)
T ss_pred HHHHHHCCCCEEEecCccCHHHHHHHHHHHHhCCCCEEEE
Confidence 3555554 4455555556666668889999888999885
No 146
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=83.39 E-value=8.6 Score=32.00 Aligned_cols=110 Identities=21% Similarity=0.258 Sum_probs=62.9
Q ss_pred CCceeech--hhHHHHHHHHHHHhccC-CeeEEecccccH-HHHHHHHHHHHHhhccccCCCCccCCEEEEeC--CCCCC
Q 020510 83 PERVLDTP--ITEAGFTGIGVGAAYYG-LKPVVEFMTFNF-SMQAIDHIINSAAKSNYMSSGQISVPIVFRGP--NGAAA 156 (325)
Q Consensus 83 p~R~i~~G--IaE~~~vg~A~GlA~~G-~~p~v~~~~~~f-~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~--~G~~~ 156 (325)
|.+|+..+ -+=-..+++|.|++++. -++++++. .+. .+-....+.. +.. .++|++++.- ++...
T Consensus 18 p~~~~~~~~~g~mG~~~~~aiGa~~a~p~~~vv~i~-GDG~f~~~~~el~t-a~~--------~~~~v~~vv~nN~~~~~ 87 (153)
T PF02775_consen 18 PRRFLTSGGFGSMGYALPAAIGAALARPDRPVVAIT-GDGSFLMSLQELAT-AVR--------YGLPVVIVVLNNGGYGM 87 (153)
T ss_dssp TTEEEESTTTT-TTTHHHHHHHHHHHSTTSEEEEEE-EHHHHHHHGGGHHH-HHH--------TTSSEEEEEEESSBSHH
T ss_pred CCeEEcCCCccccCCHHHhhhHHHhhcCcceeEEec-CCcceeeccchhHH-Hhh--------ccceEEEEEEeCCcceE
Confidence 77888732 23345567777777763 45555554 442 2222344443 332 4667666532 22210
Q ss_pred ------CCCC----------CcchHHHHHHhcCCCcEEEeeCCH--HHHHHHHHHhHhCCCcEEE
Q 020510 157 ------GVGA----------QHSHCYAAWYASVPGLKVLSPYSS--EDARGLLKAAIRDPDPVVF 203 (325)
Q Consensus 157 ------g~G~----------tHs~~~~a~~~~iP~~~V~~P~d~--~e~~~~l~~a~~~~~Pv~i 203 (325)
..+. .|...+..+.+++ |+..+.-.++ +|+...++++++.++|++|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~~el~~al~~a~~~~gp~vI 151 (153)
T PF02775_consen 88 TGGQQTPFGGGRFSGVDGKTFPNPDFAALAEAF-GIKGARVTTPDPEELEEALREALESGGPAVI 151 (153)
T ss_dssp HHHHHHHTTSTCHHSTBTTTSTTCGHHHHHHHT-TSEEEEESCHSHHHHHHHHHHHHHSSSEEEE
T ss_pred eccccccCcCcccccccccccccCCHHHHHHHc-CCcEEEEccCCHHHHHHHHHHHHhCCCcEEE
Confidence 0111 1212345677776 6677665555 9999999999999999987
No 147
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=82.93 E-value=9.1 Score=33.68 Aligned_cols=98 Identities=13% Similarity=0.103 Sum_probs=54.6
Q ss_pred HHHHHHHHHhcc----C-CeeEEecccccH-HH--HHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCCcchHH
Q 020510 95 GFTGIGVGAAYY----G-LKPVVEFMTFNF-SM--QAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCY 166 (325)
Q Consensus 95 ~~vg~A~GlA~~----G-~~p~v~~~~~~f-~~--ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tHs~~~ 166 (325)
..+++|.|+|+. | -++++++. .+. ++ ..++.+.. ++. ...|++++..+...+-.+.+. ..
T Consensus 79 ~gl~~A~G~Ala~k~~~~~~~vv~~~-GDG~~~eG~~~Eal~~-A~~--------~~~~li~vvdnN~~~~~~~~~--~~ 146 (195)
T cd02007 79 TSISAALGMAVARDLKGKKRKVIAVI-GDGALTGGMAFEALNN-AGY--------LKSNMIVILNDNEMSISPNVG--TP 146 (195)
T ss_pred hhHHHHHHHHHHHHHhCCCCeEEEEE-cccccccChHHHHHHH-HHH--------hCCCEEEEEECCCcccCCCCC--CH
Confidence 345566777654 2 23444444 444 33 45566643 443 367877765542222222222 22
Q ss_pred HHHHhcCCCcE---EEeeCCHHHHHHHHHHhHhCCCcEEEEe
Q 020510 167 AAWYASVPGLK---VLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (325)
Q Consensus 167 ~a~~~~iP~~~---V~~P~d~~e~~~~l~~a~~~~~Pv~ir~ 205 (325)
...++.. ++. ++...|.+++.+.++.+.+.++|++|..
T Consensus 147 ~~~~~a~-G~~~~~~vdG~d~~~l~~a~~~a~~~~~P~~I~~ 187 (195)
T cd02007 147 GNLFEEL-GFRYIGPVDGHNIEALIKVLKEVKDLKGPVLLHV 187 (195)
T ss_pred HHHHHhc-CCCccceECCCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 3445443 333 3566788999999988887778999853
No 148
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=82.90 E-value=16 Score=31.95 Aligned_cols=37 Identities=11% Similarity=-0.058 Sum_probs=27.8
Q ss_pred HHHhcC--CCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510 168 AWYASV--PGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 168 a~~~~i--P~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir 204 (325)
.+.+.+ +........++.|+...++.+++.++|++|-
T Consensus 142 ~iA~a~G~~~~~~~~v~~~~el~~al~~al~~~gp~vIe 180 (193)
T cd03375 142 ALALAAGATFVARGFSGDIKQLKEIIKKAIQHKGFSFVE 180 (193)
T ss_pred HHHHHCCCCEEEEEecCCHHHHHHHHHHHHhcCCCEEEE
Confidence 455554 2222246899999999999999999999985
No 149
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=82.89 E-value=3.1 Score=31.66 Aligned_cols=68 Identities=16% Similarity=0.106 Sum_probs=45.7
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCC----eEEEEecCCCCCCHHHHH
Q 020510 238 GKDVTITAFS----KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN----RLVTVEEGFPQHGVGAEI 309 (325)
Q Consensus 238 G~dv~Iia~G----~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~----~vvvvEe~~~~GGlg~~v 309 (325)
..+++|++.| +....+.+|.+.|++.|++.+.+|+.. |.+.-.++.+.++ ..|+++. ...||+....
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~----~~~~~~~l~~~~g~~tvP~vfi~g-~~iGG~~~l~ 81 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILE----DEEVRQGLKEYSNWPTFPQLYVNG-ELVGGCDIVK 81 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCC----CHHHHHHHHHHhCCCCCCEEEECC-EEEeCHHHHH
Confidence 4689999888 467788899999999999999999753 3333222222222 3466655 4579986554
Q ss_pred H
Q 020510 310 W 310 (325)
Q Consensus 310 ~ 310 (325)
+
T Consensus 82 ~ 82 (90)
T cd03028 82 E 82 (90)
T ss_pred H
Confidence 4
No 150
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=81.69 E-value=29 Score=35.45 Aligned_cols=111 Identities=14% Similarity=0.141 Sum_probs=63.9
Q ss_pred CCceeechh-hHH-HHHHHHHHHhccC--CeeEEecccccH-HHHHHHHHHHHHhhccccCCCCccCCEEEEe--CCCCC
Q 020510 83 PERVLDTPI-TEA-GFTGIGVGAAYYG--LKPVVEFMTFNF-SMQAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGAA 155 (325)
Q Consensus 83 p~R~i~~GI-aE~-~~vg~A~GlA~~G--~~p~v~~~~~~f-~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~--~~G~~ 155 (325)
|.+|+..+- .=. ..+..|.|++++. -+|++++. .+. .+.....+-. +.. .++|++++. .++..
T Consensus 386 ~~~~~~~~~~g~mG~glpaaiGa~la~p~~~~Vv~i~-GDGsf~~~~~eL~T-a~~--------~~lpi~ivV~NN~~~g 455 (549)
T PRK06457 386 EQTFIFSAWLGSMGIGVPGSVGASFAVENKRQVISFV-GDGGFTMTMMELIT-AKK--------YDLPVKIIIYNNSKLG 455 (549)
T ss_pred CCeEEeCCCcchhhhhHHHHHHHHhcCCCCCeEEEEE-cccHHhhhHHHHHH-HHH--------HCCCeEEEEEECCccc
Confidence 667776421 111 1445677777664 47777665 442 2333333433 333 466765553 22322
Q ss_pred C------CCCC-----C-cchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510 156 A------GVGA-----Q-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 156 ~------g~G~-----t-Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir 204 (325)
. ..|. . +.-.+.++..++ |+.-....+++|+...++++++.++|.+|-
T Consensus 456 ~i~~~q~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lIe 515 (549)
T PRK06457 456 MIKFEQEVMGYPEWGVDLYNPDFTKIAESI-GFKGFRLEEPKEAEEIIEEFLNTKGPAVLD 515 (549)
T ss_pred hHHHHHHHhcCCcccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 0111 1 111234566666 777888899999999999999988999984
No 151
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=80.51 E-value=11 Score=35.30 Aligned_cols=146 Identities=16% Similarity=0.087 Sum_probs=77.0
Q ss_pred cHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccC-CeeEEeccc
Q 020510 38 MVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG-LKPVVEFMT 116 (325)
Q Consensus 38 s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G-~~p~v~~~~ 116 (325)
+.-.++.+++.++-...++.+++ .|.+.++ ....+.+ +..+.-. =..++.+|.|+++.. -+++++..
T Consensus 18 ~i~~~~~~a~~~l~~~p~d~ivv-sdiG~~~----~~~~~~~---~~~~~~~---mG~alp~AiGaklA~pd~~VVai~- 85 (280)
T PRK11869 18 GIRNALMKALSELNLKPRQVVIV-SGIGQAA----KMPHYIN---VNGFHTL---HGRAIPAATAVKATNPELTVIAEG- 85 (280)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEE-eCchHhh----hHHHHcc---CCCCCcc---cccHHHHHHHHHHHCCCCcEEEEE-
Confidence 45677888887765445555555 4555321 1111111 1111111 123456677777665 46777665
Q ss_pred ccHHHH--HHHHHHHHHhhccccCCCCccCCEEEEeCC----CCCCC-C------CC-C--------cch-HHHHHHhc-
Q 020510 117 FNFSMQ--AIDHIINSAAKSNYMSSGQISVPIVFRGPN----GAAAG-V------GA-Q--------HSH-CYAAWYAS- 172 (325)
Q Consensus 117 ~~f~~r--a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~----G~~~g-~------G~-t--------Hs~-~~~a~~~~- 172 (325)
.+.... ++..+.+ ++. .++|++++..+ |.+.+ . |. + ... ++..+..+
T Consensus 86 GDG~~~~iG~~eL~t-A~r--------~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~~~~~~p~g~~~~~~D~~~lA~a~ 156 (280)
T PRK11869 86 GDGDMYAEGGNHLIH-AIR--------RNPDITVLVHNNQVYGLTKGQASPTTLKGFKTPTQPWGVFEEPFNPIALAIAL 156 (280)
T ss_pred CchHHhhCcHHHHHH-HHH--------hCcCcEEEEEECHHHhhhcceecCCCCCCcccccCCCCccCCCCCHHHHHHHC
Confidence 554332 2555654 343 46776665322 22111 1 00 0 000 12234433
Q ss_pred -CCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510 173 -VPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 173 -iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir 204 (325)
.+.+....+.++.|+...++.|++.++|++|-
T Consensus 157 G~~~va~~~~~~~~~l~~~i~~Al~~~Gp~lIe 189 (280)
T PRK11869 157 DASFVARTFSGDIEETKEILKEAIKHKGLAIVD 189 (280)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 34444444999999999999999999999985
No 152
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=80.29 E-value=25 Score=32.07 Aligned_cols=98 Identities=13% Similarity=0.113 Sum_probs=57.1
Q ss_pred HHHHHHHHhcc------CCeeEEecccccH-HH--HHHHHHHHHHhhccccCCCCccCC-EEEEeCCCCCCCCCCCcc--
Q 020510 96 FTGIGVGAAYY------GLKPVVEFMTFNF-SM--QAIDHIINSAAKSNYMSSGQISVP-IVFRGPNGAAAGVGAQHS-- 163 (325)
Q Consensus 96 ~vg~A~GlA~~------G~~p~v~~~~~~f-~~--ra~dqi~~~~a~~~~~~~~~~~~p-vv~~~~~G~~~g~G~tHs-- 163 (325)
.++.|.|+|++ ..++++ +. .+. ++ ..++.+.. ++. .++| ++++..+...+-.+.++.
T Consensus 110 gl~~avG~Ala~~~~~~~~~v~~-i~-GDG~~~~G~~~eal~~-a~~--------~~l~~li~vvdnN~~~~~~~~~~~~ 178 (255)
T cd02012 110 GLSVAVGMALAEKLLGFDYRVYV-LL-GDGELQEGSVWEAASF-AGH--------YKLDNLIAIVDSNRIQIDGPTDDIL 178 (255)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEE-EE-CcccccccHHHHHHHH-HHH--------cCCCcEEEEEECCCccccCcHhhcc
Confidence 44566776655 344444 43 443 22 35666644 443 4665 444443322222233321
Q ss_pred -h-HHHHHHhcCCCcEEEeeC--CHHHHHHHHHHhHhC-CCcEEEEe
Q 020510 164 -H-CYAAWYASVPGLKVLSPY--SSEDARGLLKAAIRD-PDPVVFLE 205 (325)
Q Consensus 164 -~-~~~a~~~~iP~~~V~~P~--d~~e~~~~l~~a~~~-~~Pv~ir~ 205 (325)
. .+..+++++ |+.++.-. |..++...++.+.+. ++|++|..
T Consensus 179 ~~~~~~~~~~a~-G~~~~~v~G~d~~~l~~al~~a~~~~~~P~~I~~ 224 (255)
T cd02012 179 FTEDLAKKFEAF-GWNVIEVDGHDVEEILAALEEAKKSKGKPTLIIA 224 (255)
T ss_pred CchhHHHHHHHc-CCeEEEECCCCHHHHHHHHHHHHHcCCCCEEEEE
Confidence 1 223677777 78888777 999999999998886 78998854
No 153
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=80.12 E-value=14 Score=36.64 Aligned_cols=113 Identities=19% Similarity=0.144 Sum_probs=62.1
Q ss_pred ceeechhhHHHHHHHHHHHhcc-CCeeE-EecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCC--CCCCC
Q 020510 85 RVLDTPITEAGFTGIGVGAAYY-GLKPV-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGA 160 (325)
Q Consensus 85 R~i~~GIaE~~~vg~A~GlA~~-G~~p~-v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~--~g~G~ 160 (325)
+++.+ ..|+++.-+|-|.|+. |...+ +.|..+. ..-++--+.+ |+ ..++||+++..+-.. .+.+.
T Consensus 40 ~~v~~-~hE~~A~~mAdgyar~tg~~gv~~~t~GpG-~~N~l~gl~~--A~-------~~~~Pvl~i~g~~~~~~~~~~~ 108 (432)
T TIGR00173 40 RVHVH-IDERSAGFFALGLAKASGRPVAVVCTSGTA-VANLLPAVIE--AS-------YSGVPLIVLTADRPPELRGCGA 108 (432)
T ss_pred EEEEe-cCCccHHHHHHHHHhccCCCEEEEECCcch-HhhhhHHHHH--hc-------ccCCcEEEEeCCCCHHHhCCCC
Confidence 66665 8999999999999988 54333 3344343 3334444433 33 268999888643222 12222
Q ss_pred CcchHHHHHHhcCCCc--EEEeeCC-------HHHHHHHHHHhHh-CCCcEEEEeCcc
Q 020510 161 QHSHCYAAWYASVPGL--KVLSPYS-------SEDARGLLKAAIR-DPDPVVFLENEL 208 (325)
Q Consensus 161 tHs~~~~a~~~~iP~~--~V~~P~d-------~~e~~~~l~~a~~-~~~Pv~ir~~~~ 208 (325)
.+......+++.+-.. .|-.|.+ +..+.++++.|.. .++||++-.+..
T Consensus 109 ~q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 166 (432)
T TIGR00173 109 NQTIDQPGLFGSYVRWSLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVPFR 166 (432)
T ss_pred CcccchhhHHhhccceeeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCCCC
Confidence 1111223778776433 2223443 1233444444444 358999987654
No 154
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=79.57 E-value=3.9 Score=31.73 Aligned_cols=78 Identities=18% Similarity=0.144 Sum_probs=48.4
Q ss_pred eCCcEEEEEec----hhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHh-CCCeEEEEecCCCCCCHHHHHHH
Q 020510 237 EGKDVTITAFS----KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVR-KTNRLVTVEEGFPQHGVGAEIWC 311 (325)
Q Consensus 237 ~G~dv~Iia~G----~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~-~~~~vvvvEe~~~~GGlg~~v~~ 311 (325)
..++++|++.| +....+.+|.+.|++.|++...+|+..- |-..+.+.+.-. ++-..|++++. ..||..+..+
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~-~~~~~~l~~~tg~~tvP~vfi~g~-~iGG~ddl~~- 86 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLED-PEIRQGIKEYSNWPTIPQLYVKGE-FVGGCDIIME- 86 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCC-HHHHHHHHHHhCCCCCCEEEECCE-EEeChHHHHH-
Confidence 34689999888 4678888899999999999999998531 111122222111 12234666654 4788866554
Q ss_pred HHcCCCc
Q 020510 312 AFFPPAW 318 (325)
Q Consensus 312 ~l~~~~~ 318 (325)
+.++|-
T Consensus 87 -l~~~g~ 92 (97)
T TIGR00365 87 -MYQSGE 92 (97)
T ss_pred -HHHCcC
Confidence 334443
No 155
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=79.49 E-value=41 Score=29.25 Aligned_cols=110 Identities=16% Similarity=0.141 Sum_probs=58.9
Q ss_pred CCceeechhhHHHHHHHHHHHhccC-CeeEEecccccH-HHHHHHHHHHHHhhccccCCCCccC-CEEEE-eCCCCCCCC
Q 020510 83 PERVLDTPITEAGFTGIGVGAAYYG-LKPVVEFMTFNF-SMQAIDHIINSAAKSNYMSSGQISV-PIVFR-GPNGAAAGV 158 (325)
Q Consensus 83 p~R~i~~GIaE~~~vg~A~GlA~~G-~~p~v~~~~~~f-~~ra~dqi~~~~a~~~~~~~~~~~~-pvv~~-~~~G~~~g~ 158 (325)
|++|+..|-.= ..++.|.|++++. -++++++. .+. ++.....+- .++. .++ |++++ ..++.++-.
T Consensus 41 ~~~~~~~g~mG-~~lpaAiGaala~p~~~Vv~i~-GDG~f~m~~~eL~-ta~~--------~~l~~i~ivV~NN~~yg~~ 109 (188)
T cd03371 41 AQDFLTVGSMG-HASQIALGIALARPDRKVVCID-GDGAALMHMGGLA-TIGG--------LAPANLIHIVLNNGAHDSV 109 (188)
T ss_pred cCceeecCccc-cHHHHHHHHHHhCCCCcEEEEe-CCcHHHhhccHHH-HHHH--------cCCCCcEEEEEeCchhhcc
Confidence 48888752211 1346777777553 45666554 443 222333332 2332 233 44333 233222111
Q ss_pred C--CC--cchHHHHHHhcCCCcEE-EeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510 159 G--AQ--HSHCYAAWYASVPGLKV-LSPYSSEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 159 G--~t--Hs~~~~a~~~~iP~~~V-~~P~d~~e~~~~l~~a~~~~~Pv~ir 204 (325)
+ .+ +.-.+..+...+ |+.- ....++.|+..+++++++.++|++|.
T Consensus 110 ~~~~~~~~~~d~~~~A~a~-G~~~~~~v~~~~el~~al~~a~~~~~p~lIe 159 (188)
T cd03371 110 GGQPTVSFDVSLPAIAKAC-GYRAVYEVPSLEELVAALAKALAADGPAFIE 159 (188)
T ss_pred CCcCCCCCCCCHHHHHHHc-CCceEEecCCHHHHHHHHHHHHhCCCCEEEE
Confidence 1 11 112334566665 5543 45679999999999999988999985
No 156
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=79.27 E-value=9.6 Score=36.93 Aligned_cols=102 Identities=22% Similarity=0.173 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhccCCee-EEecccccHH--H-HHHHHHHHHHhhccccCCCCccCCEEEEeCC-CCCCCCCC--CcchHH
Q 020510 94 AGFTGIGVGAAYYGLKP-VVEFMTFNFS--M-QAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAGVGA--QHSHCY 166 (325)
Q Consensus 94 ~~~vg~A~GlA~~G~~p-~v~~~~~~f~--~-ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~~g~G~--tHs~~~ 166 (325)
-.++|.|.++-..|... ++.+++.+.. + --++-+ |-++. +++|+|++.-+ +...+..- ++....
T Consensus 143 ~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEal-N~A~v--------~klPvvf~ieNN~yAiSvp~~~q~~~~~ 213 (358)
T COG1071 143 PLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEAL-NFAAV--------WKLPVVFVIENNQYAISVPRSRQTAAEI 213 (358)
T ss_pred cHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHHH-HHHHH--------hcCCEEEEEecCCceeecchhhcccchh
Confidence 34556666666667333 4444445431 1 223433 44554 58999998653 32212111 111111
Q ss_pred H---HHHhcCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEe
Q 020510 167 A---AWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLE 205 (325)
Q Consensus 167 ~---a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~ir~ 205 (325)
. +..-.||++.| .=.|...++...++|.+ .++|++|-.
T Consensus 214 ~~~ra~aygipgv~V-DG~D~~avy~~~~~A~e~AR~g~GPtLIE~ 258 (358)
T COG1071 214 IAARAAAYGIPGVRV-DGNDVLAVYEAAKEAVERARAGEGPTLIEA 258 (358)
T ss_pred HHhhhhccCCCeEEE-CCcCHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 1 44457999998 88888888888888876 367999853
No 157
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=78.57 E-value=15 Score=37.46 Aligned_cols=110 Identities=18% Similarity=0.178 Sum_probs=64.1
Q ss_pred CCceeechh-h-HHHHHHHHHHHhccC-CeeEEeccccc--HHHHHHHHHHHHHhhccccCCCCccCCEEEEeC-CCCCC
Q 020510 83 PERVLDTPI-T-EAGFTGIGVGAAYYG-LKPVVEFMTFN--FSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAA 156 (325)
Q Consensus 83 p~R~i~~GI-a-E~~~vg~A~GlA~~G-~~p~v~~~~~~--f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G~~~ 156 (325)
|.+|++.+- . --..++.|.|++++. -++++++. .+ |++.+ ..+-. +.. .++|++++.- +|.++
T Consensus 402 p~~~~~~~~~g~mG~~l~aaiGa~la~~~~~vv~~~-GDG~f~~~~-~eL~t-a~~--------~~l~~~~vv~NN~~~~ 470 (558)
T TIGR00118 402 PRRFITSGGLGTMGFGLPAAIGAKVAKPESTVICIT-GDGSFQMNL-QELST-AVQ--------YDIPVKILILNNRYLG 470 (558)
T ss_pred CCeEEeCCccccccchhhHHHhhhhhCCCCcEEEEE-cchHHhccH-HHHHH-HHH--------hCCCeEEEEEeCCchH
Confidence 788887643 2 333567888877763 34455443 43 33322 22322 343 4677665542 23221
Q ss_pred ----------CC--CCCc--ch-HHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510 157 ----------GV--GAQH--SH-CYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 157 ----------g~--G~tH--s~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir 204 (325)
+. ..++ .. .+..+...+ |+.-+.-.+++|++..++.+++.++|++|-
T Consensus 471 ~~~~~q~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~l~~al~~a~~~~~p~lie 532 (558)
T TIGR00118 471 MVRQWQELFYEERYSHTHMGSLPDFVKLAEAY-GIKGIRIEKPEELDEKLKEALSSNEPVLLD 532 (558)
T ss_pred HHHHHHHHhcCCceeeccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 00 0111 12 234566666 777788889999999999999989999984
No 158
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=78.34 E-value=10 Score=34.74 Aligned_cols=70 Identities=16% Similarity=0.092 Sum_probs=44.0
Q ss_pred cEEEEEec-hhHHHHHHHHHHHHh-cCCcEEEEEeeeccCCCHHH-----HHHHHhCCCeEEEEecCCCCCCHHHHHHH
Q 020510 240 DVTITAFS-KIVGLSLKAAEILAK-EGISAEVINLRSIRPLDRST-----INASVRKTNRLVTVEEGFPQHGVGAEIWC 311 (325)
Q Consensus 240 dv~Iia~G-~~~~~a~~Aa~~L~~-~Gi~~~Vi~~~~l~P~d~~~-----l~~~~~~~~~vvvvEe~~~~GGlg~~v~~ 311 (325)
+=+|+++| +...+..+|.+.+++ .+.++.++++.+-+|-+.+. |..+-++++..|=+=||.. |....+++
T Consensus 114 kPvIlSTG~stl~EI~~Av~~~~~~~~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~~~vG~SDHt~--g~~~~~~A 190 (241)
T PF03102_consen 114 KPVILSTGMSTLEEIERAVEVLREAGNEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFGVPVGYSDHTD--GIEAPIAA 190 (241)
T ss_dssp S-EEEE-TT--HHHHHHHHHHHHHHCT--EEEEEE-SSSS--GGG--TTHHHHHHHHSTSEEEEEE-SS--SSHHHHHH
T ss_pred CcEEEECCCCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCChHHcChHHHHHHHHhcCCCEEeCCCCC--CcHHHHHH
Confidence 34678999 566899999999954 47899999999999988763 4444446777889999986 44444443
No 159
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=78.16 E-value=34 Score=35.00 Aligned_cols=147 Identities=18% Similarity=0.250 Sum_probs=78.8
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechh--hHHHHHHHHHHHhccCCeeEEecccccH-
Q 020510 43 LNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPI--TEAGFTGIGVGAAYYGLKPVVEFMTFNF- 119 (325)
Q Consensus 43 ~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GI--aE~~~vg~A~GlA~~G~~p~v~~~~~~f- 119 (325)
+.+.|.+.+..++++++++ |.+.. ......+..-..|.+|++.+. +=-..+..|.|++++--++++.+. .+.
T Consensus 371 ~~~~l~~~l~~~~~~ivv~-d~~~~---~~~~~~~~~~~~p~~~~~~~~~gsmG~~lpaaiGaala~~~~vv~i~-GDGs 445 (554)
T TIGR03254 371 ALEAIRDVLKDNPDIYLVN-EGANT---LDLARNVIDMYKPRHRLDVGTWGVMGIGMGYAIAAAVETGKPVVALE-GDSA 445 (554)
T ss_pred HHHHHHHhcCCCCCEEEEe-CCchH---HHHHHHhcccCCCCcEeeCCCCCcCCchHHHHHHHHhcCCCcEEEEE-cCch
Confidence 4566766665545666554 33211 111112222223778887542 112344566666666446666665 442
Q ss_pred HHHHHHHHHHHHhhccccCCCCccCCEEEEeC-C-CCCCC-----CC-----CC--cchHHHHHHhcCCCcEEEeeCCHH
Q 020510 120 SMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N-GAAAG-----VG-----AQ--HSHCYAAWYASVPGLKVLSPYSSE 185 (325)
Q Consensus 120 ~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~-G~~~g-----~G-----~t--Hs~~~~a~~~~iP~~~V~~P~d~~ 185 (325)
.+.....+-. ++. .++|++++.- + +...+ .+ .. +.-.+.++.+++ |..-+.-.+++
T Consensus 446 f~m~~~EL~T-a~r--------~~l~v~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~-G~~~~~v~~~~ 515 (554)
T TIGR03254 446 FGFSGMEVET-ICR--------YNLPVCVVIFNNGGIYRGDDVNVVGADPAPTVLVHGARYDKMMKAF-GGVGYNVTTPD 515 (554)
T ss_pred hcccHHHHHH-HHH--------cCCCEEEEEEeChhhhhhhhhhhcCCCCCccccCCCCCHHHHHHHC-CCeEEEeCCHH
Confidence 3333333433 443 4677665532 3 32111 11 11 111223566666 66677779999
Q ss_pred HHHHHHHHhHhCCCcEEEE
Q 020510 186 DARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 186 e~~~~l~~a~~~~~Pv~ir 204 (325)
|+...++++++.++|++|-
T Consensus 516 el~~al~~a~~~~~p~lIe 534 (554)
T TIGR03254 516 ELKAALNEALASGKPTLIN 534 (554)
T ss_pred HHHHHHHHHHhCCCCEEEE
Confidence 9999999999888999884
No 160
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=77.51 E-value=12 Score=35.85 Aligned_cols=71 Identities=13% Similarity=0.076 Sum_probs=50.1
Q ss_pred EEEEEec-hhHHHHHHHHHHHHhcCCc---EEEEEeeeccCCCHH-----HHHHHHhCCCeEEEEecCCCCCCHHHHHHH
Q 020510 241 VTITAFS-KIVGLSLKAAEILAKEGIS---AEVINLRSIRPLDRS-----TINASVRKTNRLVTVEEGFPQHGVGAEIWC 311 (325)
Q Consensus 241 v~Iia~G-~~~~~a~~Aa~~L~~~Gi~---~~Vi~~~~l~P~d~~-----~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~ 311 (325)
=+|+++| +...+..+|++.+++.|.+ +.++++.+-+|-+.+ .|..+-+.++..|-+-||.. |....+++
T Consensus 135 PvilStGmatl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f~~pVG~SdHt~--G~~~~~aA 212 (329)
T TIGR03569 135 PVILSTGMATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAFDLPVGYSDHTL--GIEAPIAA 212 (329)
T ss_pred cEEEECCCCCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHhCCCEEECCCCc--cHHHHHHH
Confidence 4678888 5668999999999988864 899999998887665 34433335665677788873 45444544
Q ss_pred HH
Q 020510 312 AF 313 (325)
Q Consensus 312 ~l 313 (325)
..
T Consensus 213 va 214 (329)
T TIGR03569 213 VA 214 (329)
T ss_pred HH
Confidence 43
No 161
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=77.42 E-value=15 Score=35.91 Aligned_cols=82 Identities=16% Similarity=0.111 Sum_probs=59.5
Q ss_pred EEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCC---CeEEEEecCCCCCCH--HH
Q 020510 233 KIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKT---NRLVTVEEGFPQHGV--GA 307 (325)
Q Consensus 233 ~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~---~~vvvvEe~~~~GGl--g~ 307 (325)
.++.+|.+++++..|..-+.--+.++ ..|.++.++++.+=+|+|.+.+.+.+++. +.|.++...+.+|=+ -.
T Consensus 75 sl~~pgdkVLv~~nG~FG~R~~~ia~---~~g~~v~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~ 151 (383)
T COG0075 75 SLVEPGDKVLVVVNGKFGERFAEIAE---RYGAEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLK 151 (383)
T ss_pred hccCCCCeEEEEeCChHHHHHHHHHH---HhCCceEEEeCCCCCCCCHHHHHHHHhcCCCccEEEEEeccCcccccCcHH
Confidence 45567889999999998887666555 45899999999999999999999999854 345666665655433 24
Q ss_pred HHHHHHcCCC
Q 020510 308 EIWCAFFPPA 317 (325)
Q Consensus 308 ~v~~~l~~~~ 317 (325)
+|+..+.+.+
T Consensus 152 ~I~~~~k~~g 161 (383)
T COG0075 152 EIAKAAKEHG 161 (383)
T ss_pred HHHHHHHHcC
Confidence 5555554443
No 162
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=76.70 E-value=14 Score=32.45 Aligned_cols=111 Identities=15% Similarity=0.139 Sum_probs=63.0
Q ss_pred CCceeechh-hHHH-HHHHHHHHhccC-CeeEEecccccH-HHHHHHHHHHHHhhccccCCCCccCCEEEEeC-CC-CCC
Q 020510 83 PERVLDTPI-TEAG-FTGIGVGAAYYG-LKPVVEFMTFNF-SMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NG-AAA 156 (325)
Q Consensus 83 p~R~i~~GI-aE~~-~vg~A~GlA~~G-~~p~v~~~~~~f-~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G-~~~ 156 (325)
|.+|++.+- .=.+ .++.|.|++++. -++++++. .+. .+.....+-. +.. .++|++++.- ++ ...
T Consensus 47 ~~~~~~~~~~GsmG~~lpaaiGa~la~p~~~vv~i~-GDG~f~m~~~eL~T-a~~--------~~lpviivV~NN~~yg~ 116 (202)
T cd02006 47 PRHWINCGQAGPLGWTVPAALGVAAADPDRQVVALS-GDYDFQFMIEELAV-GAQ--------HRIPYIHVLVNNAYLGL 116 (202)
T ss_pred CCeEEccCCccchhhhhHHHHhHHhhCCCCeEEEEE-eChHhhccHHHHHH-HHH--------hCCCeEEEEEeCchHHH
Confidence 788887642 2122 455778877663 46777665 442 3333333433 332 4778666543 22 211
Q ss_pred -C-------C----CCCcc-----------hHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEE
Q 020510 157 -G-------V----GAQHS-----------HCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFL 204 (325)
Q Consensus 157 -g-------~----G~tHs-----------~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~ir 204 (325)
. . +..+. -++..+.+++ |+.-+...++.|+...++.+++ .++|++|-
T Consensus 117 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~~p~lie 190 (202)
T cd02006 117 IRQAQRAFDMDYQVNLAFENINSSELGGYGVDHVKVAEGL-GCKAIRVTKPEELAAAFEQAKKLMAEHRVPVVVE 190 (202)
T ss_pred HHHHHHHhcCccccccccccccccccCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHHhcccCCCcEEEE
Confidence 0 0 00010 1122455555 6778888999999999999985 57899884
No 163
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=76.37 E-value=11 Score=35.92 Aligned_cols=85 Identities=14% Similarity=0.120 Sum_probs=60.0
Q ss_pred eCCcEEEEEec-hhHHHHHHHHHHHHhcCC-cEEEEEeeeccCCCHHH-----HHHHHhCCCeEEEEecCCCCCCHHHHH
Q 020510 237 EGKDVTITAFS-KIVGLSLKAAEILAKEGI-SAEVINLRSIRPLDRST-----INASVRKTNRLVTVEEGFPQHGVGAEI 309 (325)
Q Consensus 237 ~G~dv~Iia~G-~~~~~a~~Aa~~L~~~Gi-~~~Vi~~~~l~P~d~~~-----l~~~~~~~~~vvvvEe~~~~GGlg~~v 309 (325)
.++ =+|+++| ....+..+|.+.++++|. ++.+++|.+.+|-|.+. +.++.......|=+-||+. |-+....
T Consensus 146 ~~k-PiIlSTGma~~~ei~~av~~~r~~g~~~i~LLhC~s~YPap~ed~NL~~i~~l~~~Fn~~vGlSDHT~-g~~a~l~ 223 (347)
T COG2089 146 KGK-PIILSTGMATIEEIEEAVAILRENGNPDIALLHCTSAYPAPFEDVNLKAIPKLAEAFNAIVGLSDHTL-GILAPLA 223 (347)
T ss_pred cCC-CEEEEcccccHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCHHHhhHHHHHHHHHHhCCccccccCcc-chhHHHH
Confidence 444 5678999 555899999999999865 59999999999998774 4455556677888999984 5443333
Q ss_pred H----HHHcCCCccccCC
Q 020510 310 W----CAFFPPAWLISSN 323 (325)
Q Consensus 310 ~----~~l~~~~~~~~~~ 323 (325)
+ +.+.|..|...-|
T Consensus 224 AvALGA~viEKHFtldk~ 241 (347)
T COG2089 224 AVALGASVIEKHFTLDKS 241 (347)
T ss_pred HHHhcccceeeeeeecCC
Confidence 3 3334566655543
No 164
>PRK08617 acetolactate synthase; Reviewed
Probab=76.13 E-value=28 Score=35.53 Aligned_cols=111 Identities=22% Similarity=0.210 Sum_probs=64.5
Q ss_pred hCCCceeechhhHHHHHH----HHHHHhccC-CeeEEecccccH-HHHHHHHHHHHHhhccccCCCCccCCEEEEe-CCC
Q 020510 81 YGPERVLDTPITEAGFTG----IGVGAAYYG-LKPVVEFMTFNF-SMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNG 153 (325)
Q Consensus 81 ~gp~R~i~~GIaE~~~vg----~A~GlA~~G-~~p~v~~~~~~f-~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~-~~G 153 (325)
+.|.+|+..+ -.+.+| .|.|++++. -++++++. .+. .+.....+-. +.. .++|++++. .++
T Consensus 402 ~~p~~~~~~~--~~g~mG~~lpaaiGa~la~p~~~vv~i~-GDGsf~m~~~eL~T-a~~--------~~lpv~~vV~NN~ 469 (552)
T PRK08617 402 YEPRHLLFSN--GMQTLGVALPWAIAAALVRPGKKVVSVS-GDGGFLFSAMELET-AVR--------LKLNIVHIIWNDG 469 (552)
T ss_pred cCCCeEEecC--ccccccccccHHHhhHhhcCCCcEEEEE-echHHhhhHHHHHH-HHH--------hCCCeEEEEEECC
Confidence 4477877542 123555 778877663 35555554 442 3333333433 332 477766543 233
Q ss_pred CCCC------------CCCC-cchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510 154 AAAG------------VGAQ-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 154 ~~~g------------~G~t-Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir 204 (325)
..+- .|.. +.-.+.++.+.+ |+.-+...+++|+...++.+++.++|.+|-
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lie 532 (552)
T PRK08617 470 HYNMVEFQEEMKYGRSSGVDFGPVDFVKYAESF-GAKGLRVTSPDELEPVLREALATDGPVVID 532 (552)
T ss_pred ccchHHHHHHhhcCCcccCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCcEEEE
Confidence 2210 0111 111233566666 778889999999999999999888999885
No 165
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=75.77 E-value=81 Score=30.63 Aligned_cols=111 Identities=19% Similarity=0.135 Sum_probs=61.4
Q ss_pred CCceeechhhHHHHHHHHHHHhccC-CeeEEecccccHH-HHHHHHHHHHHhhccccCCCCccCCEEEEe-CCCCCCCCC
Q 020510 83 PERVLDTPITEAGFTGIGVGAAYYG-LKPVVEFMTFNFS-MQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAAGVG 159 (325)
Q Consensus 83 p~R~i~~GIaE~~~vg~A~GlA~~G-~~p~v~~~~~~f~-~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~-~~G~~~g~G 159 (325)
|.+|+..|--= ...++|.|+|++- -++++++. .+.. +-....+. .++.. ...+++++. .++.....|
T Consensus 214 ~~~f~~~GsMG-~a~p~AlG~ala~p~r~Vv~i~-GDGsflm~~~eL~-t~~~~-------~~~nli~VVlNNg~~~~~g 283 (361)
T TIGR03297 214 ARDFLTVGSMG-HASQIALGLALARPDQRVVCLD-GDGAALMHMGGLA-TIGTQ-------GPANLIHVLFNNGAHDSVG 283 (361)
T ss_pred CCceEeechhh-hHHHHHHHHHHHCCCCCEEEEE-ChHHHHHHHHHHH-HHHHh-------CCCCeEEEEEcCccccccC
Confidence 57787653222 2345788877663 35666555 4432 22222232 23321 123444432 333321111
Q ss_pred --CCcc--hHHHHHHhcCCCc-EEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510 160 --AQHS--HCYAAWYASVPGL-KVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 160 --~tHs--~~~~a~~~~iP~~-~V~~P~d~~e~~~~l~~a~~~~~Pv~ir 204 (325)
.+++ -++..+.++. |. ..+...+.+|+..+++++.+.++|++|.
T Consensus 284 ~q~~~~~~~d~~~iA~a~-G~~~~~~v~~~~eL~~al~~a~~~~gp~lIe 332 (361)
T TIGR03297 284 GQPTVSQHLDFAQIAKAC-GYAKVYEVSTLEELETALTAASSANGPRLIE 332 (361)
T ss_pred CcCCCCCCCCHHHHHHHC-CCceEEEeCCHHHHHHHHHHHHhCCCcEEEE
Confidence 2221 2334677766 54 5778899999999999999888999875
No 166
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=75.71 E-value=31 Score=35.39 Aligned_cols=111 Identities=14% Similarity=0.066 Sum_probs=64.8
Q ss_pred CCceeechh--hHHHHHHHHHHHhccC-CeeEEecccccH-HHHHHHHHHHHHhhccccCCCCccCCEEEEe--CCCCCC
Q 020510 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTFNF-SMQAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGAAA 156 (325)
Q Consensus 83 p~R~i~~GI--aE~~~vg~A~GlA~~G-~~p~v~~~~~~f-~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~--~~G~~~ 156 (325)
|.+|+..+- +=-..++.|.|++++- -++++++. .+. .+.....+-. +.. .++|++++. .++...
T Consensus 404 ~~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~-GDG~f~m~~~eL~T-a~~--------~~l~i~~vV~NN~~y~~ 473 (561)
T PRK06048 404 PRTFITSGGLGTMGYGFPAAIGAKVGKPDKTVIDIA-GDGSFQMNSQELAT-AVQ--------NDIPVIVAILNNGYLGM 473 (561)
T ss_pred CCeEEeCCCccccccHHHHHHHHHHhCCCCcEEEEE-eCchhhccHHHHHH-HHH--------cCCCeEEEEEECCccHH
Confidence 678887532 3334667788877763 35666555 432 2222333322 332 466655543 222210
Q ss_pred ----------C--CCCC--cchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510 157 ----------G--VGAQ--HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 157 ----------g--~G~t--Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir 204 (325)
. .+.. +.-.+..+.+.+ |+.-+.-.+..|+...+++++..++|.+|-
T Consensus 474 i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~t~~el~~al~~a~~~~~p~lie 534 (561)
T PRK06048 474 VRQWQELFYDKRYSHTCIKGSVDFVKLAEAY-GALGLRVEKPSEVRPAIEEAVASDRPVVID 534 (561)
T ss_pred HHHHHHHHcCCcccccCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 0111 111223566666 778888999999999999999989999985
No 167
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=75.66 E-value=17 Score=26.83 Aligned_cols=58 Identities=22% Similarity=0.339 Sum_probs=37.7
Q ss_pred cEEEEEech-hHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHh-CCCeEEEEecCC
Q 020510 240 DVTITAFSK-IVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVR-KTNRLVTVEEGF 300 (325)
Q Consensus 240 dv~Iia~G~-~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~-~~~~vvvvEe~~ 300 (325)
++.|++.+. ....|++.++.|+++|+++.+ |.+. +.+... +..+-+ ....++++.+..
T Consensus 3 ~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~-d~~~-~~~~~~-~~~a~~~g~~~~iiig~~e 62 (91)
T cd00860 3 QVVVIPVTDEHLDYAKEVAKKLSDAGIRVEV-DLRN-EKLGKK-IREAQLQKIPYILVVGDKE 62 (91)
T ss_pred EEEEEeeCchHHHHHHHHHHHHHHCCCEEEE-ECCC-CCHHHH-HHHHHHcCCCEEEEECcch
Confidence 566777664 557999999999999999987 4443 445443 333322 334577777544
No 168
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=74.72 E-value=39 Score=34.40 Aligned_cols=111 Identities=9% Similarity=0.062 Sum_probs=63.7
Q ss_pred CCceeechhh--HHHHHHHHHHHhccC-CeeEEecccccH-HHHHHHHHHHHHhhccccCCCCccCCEEEEe--CCCCCC
Q 020510 83 PERVLDTPIT--EAGFTGIGVGAAYYG-LKPVVEFMTFNF-SMQAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGAAA 156 (325)
Q Consensus 83 p~R~i~~GIa--E~~~vg~A~GlA~~G-~~p~v~~~~~~f-~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~--~~G~~~ 156 (325)
|.+|+..+-. =-..++.|.|++++. -++++++. .+. .+.....+-. +.. .++|++++. .++...
T Consensus 391 ~~~~~~~~~~g~mG~glpaAiGa~la~p~~~vv~i~-GDG~f~~~~~eL~t-a~~--------~~l~v~ivV~NN~~~~~ 460 (548)
T PRK08978 391 PENFITSSGLGTMGFGLPAAIGAQVARPDDTVICVS-GDGSFMMNVQELGT-IKR--------KQLPVKIVLLDNQRLGM 460 (548)
T ss_pred CCeEEeCCchhhhhchHHHHHHHHHhCCCCcEEEEE-ccchhhccHHHHHH-HHH--------hCCCeEEEEEeCCccHH
Confidence 7888865321 122366777777663 46666665 442 2222233322 332 466665553 223220
Q ss_pred ---------C---CCCC--cchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510 157 ---------G---VGAQ--HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 157 ---------g---~G~t--Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir 204 (325)
+ .+.. +.-.+..+.+++ |..-+...+++|+...++.+++.++|.+|-
T Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lIe 521 (548)
T PRK08978 461 VRQWQQLFFDERYSETDLSDNPDFVMLASAF-GIPGQTITRKDQVEAALDTLLNSEGPYLLH 521 (548)
T ss_pred HHHHHHHHhCCcceecCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 0111 111223566666 777888899999999999999988999984
No 169
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=74.65 E-value=20 Score=26.31 Aligned_cols=72 Identities=19% Similarity=0.135 Sum_probs=44.4
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhC-CCeEEEEecCCCCCCHHHHHHHHH
Q 020510 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRK-TNRLVTVEEGFPQHGVGAEIWCAF 313 (325)
Q Consensus 237 ~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~-~~~vvvvEe~~~~GGlg~~v~~~l 313 (325)
+..+++|.+ -+....+.+|.+.|++.|++.+.+|+..- -+.+.+.+.-.. +=.++++ ++...||+ ++|.++|
T Consensus 6 ~~~~V~ly~-~~~Cp~C~~ak~~L~~~gi~y~~idi~~~--~~~~~~~~~~g~~~vP~i~i-~g~~igG~-~~l~~~l 78 (79)
T TIGR02190 6 KPESVVVFT-KPGCPFCAKAKATLKEKGYDFEEIPLGND--ARGRSLRAVTGATTVPQVFI-GGKLIGGS-DELEAYL 78 (79)
T ss_pred CCCCEEEEE-CCCCHhHHHHHHHHHHcCCCcEEEECCCC--hHHHHHHHHHCCCCcCeEEE-CCEEEcCH-HHHHHHh
Confidence 334666654 57778888999999999999999998631 122233322111 1124555 45557888 5566555
No 170
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=74.39 E-value=9.1 Score=30.67 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCC
Q 020510 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN 291 (325)
Q Consensus 248 ~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~ 291 (325)
.....+.+|.+.|+++|++.+++|+.. .|++.+.|.+.+++.+
T Consensus 8 p~C~~crkA~~~L~~~gi~~~~~d~~~-~p~s~~eL~~~l~~~g 50 (113)
T cd03033 8 PGCANNARQKALLEAAGHEVEVRDLLT-EPWTAETLRPFFGDLP 50 (113)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEeehhc-CCCCHHHHHHHHHHcC
Confidence 445678889999999999999999986 7999999888887543
No 171
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=74.24 E-value=27 Score=35.77 Aligned_cols=110 Identities=15% Similarity=0.110 Sum_probs=64.3
Q ss_pred CCceeechh-hH-HHHHHHHHHHhccC-CeeEEeccccc--HHHHHHHHHHHHHhhccccCCCCccCCEEEEeC-CC-CC
Q 020510 83 PERVLDTPI-TE-AGFTGIGVGAAYYG-LKPVVEFMTFN--FSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NG-AA 155 (325)
Q Consensus 83 p~R~i~~GI-aE-~~~vg~A~GlA~~G-~~p~v~~~~~~--f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G-~~ 155 (325)
|.+|+..+- .- -..++.|.|++++. -++++++. .+ |++-. ..+-. +.. .++|++++.. ++ ..
T Consensus 404 ~~~~~~~~~~g~mG~~l~~aiGa~la~p~~~vv~i~-GDG~f~m~~-~eL~T-a~~--------~~lpvi~vV~NN~~~~ 472 (563)
T PRK08527 404 PRQLATSGGLGTMGYGLPAALGAKLAVPDKVVINFT-GDGSILMNI-QELMT-AVE--------YKIPVINIILNNNFLG 472 (563)
T ss_pred CCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEe-cCchhcccH-HHHHH-HHH--------hCCCeEEEEEECCcch
Confidence 678886532 22 22566788887774 35555554 33 33323 22433 342 4678765532 22 22
Q ss_pred C---------C---CCCCcc-h-HHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510 156 A---------G---VGAQHS-H-CYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 156 ~---------g---~G~tHs-~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir 204 (325)
. + .+..+. . .+..+.+++ |..-+.-.+++|+...++.++..++|.+|-
T Consensus 473 ~i~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 534 (563)
T PRK08527 473 MVRQWQTFFYEERYSETDLSTQPDFVKLAESF-GGIGFRVTTKEEFDKALKEALESDKVALID 534 (563)
T ss_pred hHHHHHHhhcCCceeeccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 1 0 011111 1 223566666 677788899999999999999988999884
No 172
>PRK05858 hypothetical protein; Provisional
Probab=72.92 E-value=25 Score=35.82 Aligned_cols=112 Identities=15% Similarity=0.022 Sum_probs=63.4
Q ss_pred CCceeechh--hHHHHHHHHHHHhcc-CCeeEEecccccH-HHHHHHHHHHHHhhccccCCCCccCCEEEEeC-CCCCC-
Q 020510 83 PERVLDTPI--TEAGFTGIGVGAAYY-GLKPVVEFMTFNF-SMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAA- 156 (325)
Q Consensus 83 p~R~i~~GI--aE~~~vg~A~GlA~~-G~~p~v~~~~~~f-~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G~~~- 156 (325)
|.+|+..+. +=-..++.|.|++++ .-|+++++. .+. ++.....+-. +.. .++|++++.. ++.++
T Consensus 397 p~~~~~~~~~gsmG~~lp~aiGa~la~p~r~vv~i~-GDG~f~~~~~eL~T-a~~--------~~lpi~ivV~NN~~y~~ 466 (542)
T PRK05858 397 PGCWLDPGPFGCLGTGPGYALAARLARPSRQVVLLQ-GDGAFGFSLMDVDT-LVR--------HNLPVVSVIGNNGIWGL 466 (542)
T ss_pred CCCEEeCCCccccccchhHHHHHHHhCCCCcEEEEE-cCchhcCcHHHHHH-HHH--------cCCCEEEEEEeCCchhh
Confidence 788887653 222234555555554 235666555 432 3333333433 332 4677666543 22221
Q ss_pred C-------CCC----C--cchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEEe
Q 020510 157 G-------VGA----Q--HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (325)
Q Consensus 157 g-------~G~----t--Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir~ 205 (325)
- .|. . +.-.+..+.+.+ |..-....+++|+...++.+++.++|++|-.
T Consensus 467 ~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lIev 527 (542)
T PRK05858 467 EKHPMEALYGYDVAADLRPGTRYDEVVRAL-GGHGELVTVPAELGPALERAFASGVPYLVNV 527 (542)
T ss_pred HHHHHHHhcCCccccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCcEEEEE
Confidence 0 010 0 101223455555 6788899999999999999999999999853
No 173
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=71.90 E-value=9.3 Score=31.54 Aligned_cols=66 Identities=20% Similarity=0.288 Sum_probs=44.9
Q ss_pred chhHHHHHHHHHHHHhcCCcEEEEEeeec-cCC-------------CHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHH
Q 020510 247 SKIVGLSLKAAEILAKEGISAEVINLRSI-RPL-------------DRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCA 312 (325)
Q Consensus 247 G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l-~P~-------------d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~ 312 (325)
|.....+..+++.|++.|++++++|++.. .|+ +.+.+.+.++..+.+|++---+ .|++...+...
T Consensus 14 ~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~sP~y-~~~~s~~lK~~ 92 (152)
T PF03358_consen 14 SNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFASPVY-NGSVSGQLKNF 92 (152)
T ss_dssp SHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEEEEB-TTBE-HHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEeecEE-cCcCChhhhHH
Confidence 45567777888888888999999999986 221 2234566677777766665544 57887777655
Q ss_pred H
Q 020510 313 F 313 (325)
Q Consensus 313 l 313 (325)
+
T Consensus 93 l 93 (152)
T PF03358_consen 93 L 93 (152)
T ss_dssp H
T ss_pred H
Confidence 4
No 174
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=71.13 E-value=28 Score=35.98 Aligned_cols=99 Identities=13% Similarity=0.082 Sum_probs=56.5
Q ss_pred HHHHHHHHhccC------CeeEEecccccH-HH--HHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCCc----
Q 020510 96 FTGIGVGAAYYG------LKPVVEFMTFNF-SM--QAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQH---- 162 (325)
Q Consensus 96 ~vg~A~GlA~~G------~~p~v~~~~~~f-~~--ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tH---- 162 (325)
.+++|.|+|++- -++++++. .+. ++ ..++.+.. ++. .+.|++++..+...+-.+.+.
T Consensus 122 gl~~AvG~A~a~~~~~~~~~~v~~i~-GDG~l~eG~~~Eal~~-A~~--------~~~nli~IvdnN~~~i~~~~~~~~~ 191 (580)
T PRK05444 122 SISAALGMAKARDLKGGEDRKVVAVI-GDGALTGGMAFEALNN-AGD--------LKSDLIVILNDNEMSISPNVGALSN 191 (580)
T ss_pred HHHHHHHHHHHHHhhCCCCCeEEEEE-cccccccCHHHHHHHH-HHh--------hCCCEEEEEECCCCcCCCcchhhhh
Confidence 455667766541 34566665 554 32 56666644 443 347777665542222222221
Q ss_pred --ch-HHHHHHhcCCCcEEEe---eCCHHHHHHHHHHhHhCCCcEEEEe
Q 020510 163 --SH-CYAAWYASVPGLKVLS---PYSSEDARGLLKAAIRDPDPVVFLE 205 (325)
Q Consensus 163 --s~-~~~a~~~~iP~~~V~~---P~d~~e~~~~l~~a~~~~~Pv~ir~ 205 (325)
.. .....+++. |+.++. ..|.+++...++.+.+.++|++|..
T Consensus 192 ~~~~~~~~~~~~a~-G~~~~~~vdG~d~~~l~~al~~a~~~~~P~lI~~ 239 (580)
T PRK05444 192 YLARLRSSTLFEEL-GFNYIGPIDGHDLDALIETLKNAKDLKGPVLLHV 239 (580)
T ss_pred hhccccHHHHHHHc-CCCeeeeeCCCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 11 112455655 666554 4788899999988887789998854
No 175
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=71.06 E-value=15 Score=29.72 Aligned_cols=42 Identities=21% Similarity=0.246 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCC
Q 020510 249 IVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN 291 (325)
Q Consensus 249 ~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~ 291 (325)
....+.+|.+.|++.||+..++|... .|.+.+.|.+.++..+
T Consensus 10 ~C~t~rka~~~L~~~gi~~~~~~y~~-~~~s~~eL~~~l~~~g 51 (117)
T COG1393 10 NCSTCRKALAWLEEHGIEYTFIDYLK-TPPSREELKKILSKLG 51 (117)
T ss_pred CChHHHHHHHHHHHcCCCcEEEEeec-CCCCHHHHHHHHHHcC
Confidence 34578899999999999999999885 7899999888888765
No 176
>PRK08266 hypothetical protein; Provisional
Probab=70.64 E-value=51 Score=33.53 Aligned_cols=111 Identities=20% Similarity=0.191 Sum_probs=64.3
Q ss_pred CCceeechhh--HHHHHHHHHHHhccC-CeeEEecccccH-HHHHHHHHHHHHhhccccCCCCccCCEEEEeC-C-CCCC
Q 020510 83 PERVLDTPIT--EAGFTGIGVGAAYYG-LKPVVEFMTFNF-SMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N-GAAA 156 (325)
Q Consensus 83 p~R~i~~GIa--E~~~vg~A~GlA~~G-~~p~v~~~~~~f-~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~-G~~~ 156 (325)
|.+|+..+.- =-..++.|.|++++. -++++++. .+. ++.....+-. +.. .++|++++.- + +...
T Consensus 392 ~~~~~~~~~~GsmG~~lp~aiGa~la~p~~~vv~v~-GDG~f~~~~~eL~t-a~~--------~~lpv~ivv~NN~~y~~ 461 (542)
T PRK08266 392 PRTFVTCGYQGTLGYGFPTALGAKVANPDRPVVSIT-GDGGFMFGVQELAT-AVQ--------HNIGVVTVVFNNNAYGN 461 (542)
T ss_pred CCcEEeCCCCcccccHHHHHHHHHHhCCCCcEEEEE-cchhhhccHHHHHH-HHH--------hCCCeEEEEEeCCcchH
Confidence 6788876531 112345777877764 34555554 332 2223343433 332 4677666532 2 3210
Q ss_pred ----------C--CCCC-cchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510 157 ----------G--VGAQ-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 157 ----------g--~G~t-Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir 204 (325)
+ .+.. +.-.+..+.+++ |+..+.-.+..|+...++++++.++|.+|-
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 521 (542)
T PRK08266 462 VRRDQKRRFGGRVVASDLVNPDFVKLAESF-GVAAFRVDSPEELRAALEAALAHGGPVLIE 521 (542)
T ss_pred HHHHHHHhcCCCcccCCCCCCCHHHHHHHc-CCeEEEeCCHHHHHHHHHHHHhCCCcEEEE
Confidence 0 0111 111233566666 778888899999999999999888998884
No 177
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=70.51 E-value=54 Score=38.39 Aligned_cols=148 Identities=15% Similarity=0.105 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHhc-CCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEe--cccc
Q 020510 41 EALNSALDEEMSA-DPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVE--FMTF 117 (325)
Q Consensus 41 ~a~~~~L~~l~~~-d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~--~~~~ 117 (325)
...++.|.+.+++ +-+.|+..+-.. ...+.+.+.+ .+.=|++.+ ..|+++.-+|.|.|+..-+|-++ |..+
T Consensus 301 ~~~a~~lv~~L~~~GV~~vFg~PG~~----~~pL~dAl~~-~~~i~~i~~-rhErsAafmAdGyAR~TgkpgV~i~TsGP 374 (1655)
T PLN02980 301 AVWASLIIEECTRLGLTYFCVAPGSR----SSPLAIAASN-HPLTTCIAC-FDERSLAFHALGYARGSLKPAVVITSSGT 374 (1655)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCC----CHHHHHHHHh-CCCCeEEec-cCcchHHHHHHHHHHHhCCCEEEEEeCcH
Confidence 3455666655543 556666554211 1122233321 111366664 99999999999999985555443 4433
Q ss_pred cHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCC--CCCCCcchH-H-HHHHhcCCCcEEE--eeCCH-------
Q 020510 118 NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQHSHC-Y-AAWYASVPGLKVL--SPYSS------- 184 (325)
Q Consensus 118 ~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~--g~G~tHs~~-~-~a~~~~iP~~~V~--~P~d~------- 184 (325)
...-++--+.+ |+ ...+|++++..+.+.. +.|. + |. + .++++.+-....- .|.+.
T Consensus 375 -G~tN~l~av~e--A~-------~d~vPlLvItgd~p~~~~~~ga-~-Q~iDq~~lf~pvtK~s~~v~~p~~~~~~~~l~ 442 (1655)
T PLN02980 375 -AVSNLLPAVVE--AS-------QDFVPLLLLTADRPPELQDAGA-N-QAINQVNHFGSFVRFFFNLPPPTDLIPARMVL 442 (1655)
T ss_pred -HHHHHHHHHHH--Hh-------hcCCCEEEEeCCCCHHHhcCCC-C-cccchhhHHHhhhheeecCCCccchhhHHHHH
Confidence 33334444433 22 2689999987654332 2333 3 32 2 3788877544333 34441
Q ss_pred HHHHHHHHHhHhC-CCcEEEEeC
Q 020510 185 EDARGLLKAAIRD-PDPVVFLEN 206 (325)
Q Consensus 185 ~e~~~~l~~a~~~-~~Pv~ir~~ 206 (325)
..+..+++.|... ++||+|-.+
T Consensus 443 ~~v~~A~~~A~s~rpGPVhL~iP 465 (1655)
T PLN02980 443 TTLDSAVHWATSSPCGPVHINCP 465 (1655)
T ss_pred HHHHHHHHHHhCCCCCCEEEECc
Confidence 3344455455444 589999765
No 178
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=70.49 E-value=48 Score=34.00 Aligned_cols=146 Identities=17% Similarity=0.184 Sum_probs=78.2
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHH-HhCCCceeechh-hHH-HHHHHHHHHhccCCeeEEecccccH
Q 020510 43 LNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLE-KYGPERVLDTPI-TEA-GFTGIGVGAAYYGLKPVVEFMTFNF 119 (325)
Q Consensus 43 ~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~-~~gp~R~i~~GI-aE~-~~vg~A~GlA~~G~~p~v~~~~~~f 119 (325)
+.+.|.+.+...++.+++. |.+. .......+.. .. |.+|++.+- .=. ..++.|.|++++--++++++. .+.
T Consensus 378 ~~~~l~~~l~~~~d~iv~~-~~~~---~~~~~~~~~~~~~-p~~~~~~~~~gsmG~glpaaiGa~la~~~~vv~i~-GDG 451 (569)
T PRK09259 378 ALGAIRDVLKENPDIYLVN-EGAN---TLDLARNIIDMYK-PRHRLDCGTWGVMGIGMGYAIAAAVETGKPVVAIE-GDS 451 (569)
T ss_pred HHHHHHHHhCCCCCEEEEe-CchH---HHHHHHHhcccCC-CCceEeCCCCccccccHHHHHHHHhcCCCcEEEEe-cCc
Confidence 4566766665445666554 3221 1111112222 34 778887543 111 245677777776446666555 432
Q ss_pred -HHHHHHHHHHHHhhccccCCCCccCCEEEEeC-C-CCCC-------C-CC---CCc--chHHHHHHhcCCCcEEEeeCC
Q 020510 120 -SMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N-GAAA-------G-VG---AQH--SHCYAAWYASVPGLKVLSPYS 183 (325)
Q Consensus 120 -~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~-G~~~-------g-~G---~tH--s~~~~a~~~~iP~~~V~~P~d 183 (325)
.+.....+.. +.. .++|++++.- + |... + .. ... .-.+.++.+++ |..-+.-.+
T Consensus 452 ~f~m~~~EL~T-a~r--------~~lpi~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~ 521 (569)
T PRK09259 452 AFGFSGMEVET-ICR--------YNLPVTVVIFNNGGIYRGDDVNLSGAGDPSPTVLVHHARYDKMMEAF-GGVGYNVTT 521 (569)
T ss_pred cccccHHHHHH-HHH--------cCCCEEEEEEeChhHHHHHHHHhhcCCCccccccCCCCCHHHHHHHC-CCeEEEECC
Confidence 2223333433 343 4677666542 2 3210 0 00 111 11223566665 667778899
Q ss_pred HHHHHHHHHHhHhCCCcEEEE
Q 020510 184 SEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 184 ~~e~~~~l~~a~~~~~Pv~ir 204 (325)
+.|+...+++++..++|++|-
T Consensus 522 ~~el~~al~~a~~~~~p~lIe 542 (569)
T PRK09259 522 PDELRHALTEAIASGKPTLIN 542 (569)
T ss_pred HHHHHHHHHHHHhCCCCEEEE
Confidence 999999999999989999985
No 179
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=70.39 E-value=22 Score=27.56 Aligned_cols=67 Identities=16% Similarity=0.160 Sum_probs=44.0
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHh-----CCCeEEEEecCCCCCCHHHHH
Q 020510 239 KDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVR-----KTNRLVTVEEGFPQHGVGAEI 309 (325)
Q Consensus 239 ~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~-----~~~~vvvvEe~~~~GGlg~~v 309 (325)
.+++|.+. +..+.+.+|.+.|++.|++..++|+..- |-. ..+.+.+. ++=..|++... ..||+....
T Consensus 8 ~~Vvvysk-~~Cp~C~~ak~~L~~~~i~~~~vdid~~-~~~-~~~~~~l~~~tg~~tvP~Vfi~g~-~iGG~ddl~ 79 (99)
T TIGR02189 8 KAVVIFSR-SSCCMCHVVKRLLLTLGVNPAVHEIDKE-PAG-KDIENALSRLGCSPAVPAVFVGGK-LVGGLENVM 79 (99)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHcCCCCEEEEcCCC-ccH-HHHHHHHHHhcCCCCcCeEEECCE-EEcCHHHHH
Confidence 56777765 6677888899999999999999999842 222 22333343 22235666654 469986543
No 180
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=70.03 E-value=6.2 Score=31.19 Aligned_cols=42 Identities=26% Similarity=0.379 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCC
Q 020510 249 IVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN 291 (325)
Q Consensus 249 ~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~ 291 (325)
....+.+|.+.|+++|+++..+|+.. .|++.+.|.+.++..+
T Consensus 5 ~C~t~rka~~~L~~~gi~~~~~d~~k-~p~s~~el~~~l~~~~ 46 (110)
T PF03960_consen 5 NCSTCRKALKWLEENGIEYEFIDYKK-EPLSREELRELLSKLG 46 (110)
T ss_dssp T-HHHHHHHHHHHHTT--EEEEETTT-S---HHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHcCCCeEeehhhh-CCCCHHHHHHHHHHhc
Confidence 34678899999999999999999985 6899998888877654
No 181
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=69.97 E-value=46 Score=33.87 Aligned_cols=113 Identities=19% Similarity=0.127 Sum_probs=64.4
Q ss_pred hCCCceeech-hh-HHHHHHHHHHHhccC-CeeEEecccccH-HHHHHHHHHHHHhhccccCCCCccCCEEEEe--CCCC
Q 020510 81 YGPERVLDTP-IT-EAGFTGIGVGAAYYG-LKPVVEFMTFNF-SMQAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGA 154 (325)
Q Consensus 81 ~gp~R~i~~G-Ia-E~~~vg~A~GlA~~G-~~p~v~~~~~~f-~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~--~~G~ 154 (325)
+.|.+|+..+ .. =-..++.|.|++++. -++++++. .+. .+.....+-. +.. .++|++++. .++.
T Consensus 396 ~~~~~~~~~~~~g~mG~~lpaaiGa~la~~~~~vv~i~-GDGsf~m~~~eL~T-a~~--------~~lpi~ivV~NN~~y 465 (539)
T TIGR02418 396 YRARHLLISNGMQTLGVALPWAIGAALVRPNTKVVSVS-GDGGFLFSSMELET-AVR--------LKLNIVHIIWNDNGY 465 (539)
T ss_pred CCCCceecCCCccccccHHHHHHHHHHhCCCCcEEEEE-cchhhhchHHHHHH-HHH--------hCCCeEEEEEECCcc
Confidence 3377887542 21 123455777777653 35666555 442 2333333433 343 467766653 2232
Q ss_pred CCC-------CC----CC-cchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510 155 AAG-------VG----AQ-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 155 ~~g-------~G----~t-Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir 204 (325)
..- .+ .. +.-.+..+.+.+ |+.-....+++|+...++++++.++|.+|-
T Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~V~~~~eL~~al~~a~~~~~p~lIe 526 (539)
T TIGR02418 466 NMVEFQEEMKYQRSSGVDFGPIDFVKYAESF-GAKGLRVESPDQLEPTLRQAMEVEGPVVVD 526 (539)
T ss_pred hHHHHHHHHhcCCcccccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 210 01 00 111233566666 778889999999999999999988999984
No 182
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=69.86 E-value=40 Score=34.76 Aligned_cols=109 Identities=20% Similarity=0.240 Sum_probs=61.1
Q ss_pred CCceeechhhHHHHHH----HHHHHhccC-CeeEEecccccH-HHHHHHHHHHHHhhccccCCCCccCCEEEEeC-C-CC
Q 020510 83 PERVLDTPITEAGFTG----IGVGAAYYG-LKPVVEFMTFNF-SMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N-GA 154 (325)
Q Consensus 83 p~R~i~~GIaE~~~vg----~A~GlA~~G-~~p~v~~~~~~f-~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~-G~ 154 (325)
|.+|+..+- .+.+| .|.|++++- -++++++. .+. .+.....+ ..++. .++|++++.- + +.
T Consensus 398 ~~~~~~s~~--~gsmG~~~paAiGa~la~p~~~vv~i~-GDGsf~~~~~el-~Ta~~--------~~lpv~~vV~NN~~~ 465 (578)
T PRK06546 398 RRRVIGSFR--HGSMANALPHAIGAQLADPGRQVISMS-GDGGLSMLLGEL-LTVKL--------YDLPVKVVVFNNSTL 465 (578)
T ss_pred CceEEccCC--cccccchhHHHHHHHHhCCCCcEEEEE-cCchHhhhHHHH-HHHHH--------hCCCeEEEEEECCcc
Confidence 567775432 33443 777777663 34555454 432 22233334 33443 4677666543 2 22
Q ss_pred CC------CCC-CC----cch-HHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510 155 AA------GVG-AQ----HSH-CYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 155 ~~------g~G-~t----Hs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir 204 (325)
.. ..+ .. ... .+..+..++ |+.-+...+++|++.+++++++.++|++|-
T Consensus 466 g~i~~~q~~~~~~~~~~~~~~~df~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lIe 526 (578)
T PRK06546 466 GMVKLEMLVDGLPDFGTDHPPVDYAAIAAAL-GIHAVRVEDPKDVRGALREAFAHPGPALVD 526 (578)
T ss_pred ccHHHHHHhcCCCcccccCCCCCHHHHHHHC-CCeeEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 21 011 11 111 223555555 566677789999999999999999999984
No 183
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=69.81 E-value=12 Score=29.59 Aligned_cols=43 Identities=23% Similarity=0.252 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCC
Q 020510 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN 291 (325)
Q Consensus 248 ~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~ 291 (325)
+....+.+|.+.|+++|++.+++|+.. .|++.+.|.+.+++.+
T Consensus 7 ~~C~~crka~~~L~~~~i~~~~~di~~-~p~s~~eL~~~l~~~g 49 (105)
T cd03035 7 KNCDTVKKARKWLEARGVAYTFHDYRK-DGLDAATLERWLAKVG 49 (105)
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEeccc-CCCCHHHHHHHHHHhC
Confidence 445678889999999999999999986 7999999988887655
No 184
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=69.80 E-value=12 Score=30.58 Aligned_cols=42 Identities=14% Similarity=0.172 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCC
Q 020510 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKT 290 (325)
Q Consensus 248 ~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~ 290 (325)
.....+.+|.+.|+++|++.+++|... .|++.+.|.+.+++.
T Consensus 9 p~Cst~RKA~~~L~~~gi~~~~~d~~~-~p~t~~eL~~~l~~~ 50 (126)
T TIGR01616 9 PGCANNARQKAALKASGHDVEVQDILK-EPWHADTLRPYFGNK 50 (126)
T ss_pred CCCHHHHHHHHHHHHCCCCcEEEeccC-CCcCHHHHHHHHHHc
Confidence 445778899999999999999999986 789999888887764
No 185
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=69.54 E-value=70 Score=32.85 Aligned_cols=111 Identities=13% Similarity=0.007 Sum_probs=63.2
Q ss_pred CCceeechh--hHHHHHHHHHHHhccC-CeeEEecccccH-HHHHHHHHHHHHhhccccCCCCccCCEEEEeC-C-CCCC
Q 020510 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTFNF-SMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N-GAAA 156 (325)
Q Consensus 83 p~R~i~~GI--aE~~~vg~A~GlA~~G-~~p~v~~~~~~f-~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~-G~~~ 156 (325)
|.+|++.|- +=-..+..|.|++++- -++++++. .+. .+.....+-. +.. .++|++++.. + +...
T Consensus 413 p~~~~~~~~~gsmG~glpaAiGa~la~p~r~Vv~i~-GDG~f~m~~~eL~T-a~r--------~~lpv~ivV~NN~~y~~ 482 (574)
T PRK06466 413 PNRWINSGGLGTMGFGLPAAMGVKLAFPDQDVACVT-GEGSIQMNIQELST-CLQ--------YGLPVKIINLNNGALGM 482 (574)
T ss_pred CCcEEcCCCcchhhchHHHHHHHHHhCCCCeEEEEE-cchhhhccHHHHHH-HHH--------hCCCeEEEEEeCCccHH
Confidence 678887532 1122355677777663 45666554 442 2333333333 332 4677666543 2 3220
Q ss_pred ----------C-CCCC---cchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhC-CCcEEEE
Q 020510 157 ----------G-VGAQ---HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-PDPVVFL 204 (325)
Q Consensus 157 ----------g-~G~t---Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-~~Pv~ir 204 (325)
+ .... +.-.+.++.+++ |+.-+...+..|+...++++++. ++|.+|-
T Consensus 483 i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~~p~lIe 544 (574)
T PRK06466 483 VRQWQDMQYEGRHSHSYMESLPDFVKLAEAY-GHVGIRITDLKDLKPKLEEAFAMKDRLVFID 544 (574)
T ss_pred HHHHHHHhcCCceeecCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhcCCCcEEEE
Confidence 0 0011 111223555555 77788889999999999999986 8999884
No 186
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=69.36 E-value=14 Score=32.07 Aligned_cols=88 Identities=15% Similarity=0.058 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhHhCCCcEEEEeCccccCc---ccCccccccCC-CccccCCceEEeeeCCcEEEEEechhHHHHHHHHHH
Q 020510 184 SEDARGLLKAAIRDPDPVVFLENELLYGE---SFPVSAEVLDS-SFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEI 259 (325)
Q Consensus 184 ~~e~~~~l~~a~~~~~Pv~ir~~~~l~~~---~~p~~~~~~~~-~~~~~~gk~~vl~~G~dv~Iia~G~~~~~a~~Aa~~ 259 (325)
-+|+.++|-+|+--++-||+.--..+-.- -......++.. .+.-..++...+.+-..|.|++-.+.-.++.+.+++
T Consensus 24 iedaARlLAQA~vgeG~IYi~G~~Em~~v~~~Al~g~E~l~~~k~l~~~~~~~~~lt~~DRVllfs~~~~~~e~~~~a~~ 103 (172)
T PF10740_consen 24 IEDAARLLAQAIVGEGTIYIYGFGEMEAVEAEALYGAEPLPSAKRLSEDLENFDELTETDRVLLFSPFSTDEEAVALAKQ 103 (172)
T ss_dssp HHHHHHHHHHHHHTT--EEEEE-GGGGGGHHHHHCSTT--TTEEE--TT--------TT-EEEEEES-S--HHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCEEEEEecChHHHHHHHHHcCCCCCchhhcCcccccccccccccceEEEEeCCCCCHHHHHHHHH
Confidence 46788899999998999999622110000 00000001000 000011222334555678899988888899999999
Q ss_pred HHhcCCcEEEEE
Q 020510 260 LAKEGISAEVIN 271 (325)
Q Consensus 260 L~~~Gi~~~Vi~ 271 (325)
|.++|+++-+|.
T Consensus 104 L~~~gi~~v~Vs 115 (172)
T PF10740_consen 104 LIEQGIPFVGVS 115 (172)
T ss_dssp HHHHT--EEEEE
T ss_pred HHHCCCCEEEEE
Confidence 999999998888
No 187
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=69.03 E-value=60 Score=33.31 Aligned_cols=111 Identities=14% Similarity=0.054 Sum_probs=64.0
Q ss_pred CCceeechh-h-HHHHHHHHHHHhccC-CeeEEecccccH-HHHHHHHHHHHHhhccccCCCCccCCEEEEeC-CC-CCC
Q 020510 83 PERVLDTPI-T-EAGFTGIGVGAAYYG-LKPVVEFMTFNF-SMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NG-AAA 156 (325)
Q Consensus 83 p~R~i~~GI-a-E~~~vg~A~GlA~~G-~~p~v~~~~~~f-~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G-~~~ 156 (325)
|.+|++.|- . --..++.|.|++++. -++++++. .+. .+.....+-. ++. .++|++++.- ++ ...
T Consensus 411 p~~~~~~~~~g~mG~~lp~aiGa~la~p~~~vv~i~-GDG~f~~~~~eL~t-a~~--------~~lpv~~vV~NN~~~~~ 480 (574)
T PRK06882 411 PRRWINSGGAGTMGFGLPAAIGVKFAHPEATVVCVT-GDGSIQMNIQELST-AKQ--------YDIPVVIVSLNNRFLGM 480 (574)
T ss_pred CCcEEeCCCcccccchhHHHHHHHhhcCCCcEEEEE-cchhhhccHHHHHH-HHH--------hCCCeEEEEEECchhHH
Confidence 788988542 3 233567788888763 34445444 432 2333344433 343 4677666543 23 210
Q ss_pred --------CCCC---C---cchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhC-CCcEEEE
Q 020510 157 --------GVGA---Q---HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-PDPVVFL 204 (325)
Q Consensus 157 --------g~G~---t---Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-~~Pv~ir 204 (325)
..+. . +...+..+.+++ |+.-+...+.+|+..+++.+++. ++|++|-
T Consensus 481 i~~~q~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~eL~~al~~a~~~~~~p~lie 542 (574)
T PRK06882 481 VKQWQDLIYSGRHSQVYMNSLPDFAKLAEAY-GHVGIQIDTPDELEEKLTQAFSIKDKLVFVD 542 (574)
T ss_pred HHHHHHHhcCCcccccCCCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhcCCCcEEEE
Confidence 0011 1 111223555555 67777889999999999999985 7898884
No 188
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=68.78 E-value=46 Score=26.82 Aligned_cols=77 Identities=14% Similarity=0.102 Sum_probs=49.0
Q ss_pred EEEeeCCHHHHHHHHHHhHhCCCcEEEEeCccccCcccCccccccCCCcccc---CCceEEeeeCCcEEEEEechhHHHH
Q 020510 177 KVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLP---IGKAKIEREGKDVTITAFSKIVGLS 253 (325)
Q Consensus 177 ~V~~P~d~~e~~~~l~~a~~~~~Pv~ir~~~~l~~~~~p~~~~~~~~~~~~~---~gk~~vl~~G~dv~Iia~G~~~~~a 253 (325)
.|+.|.+.+|+..++++|.+++.|+.++-...-+. . .........+. +.+...+.+....+.+..|....+.
T Consensus 3 ~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~~-~----~~~~~~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l 77 (139)
T PF01565_consen 3 AVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSWT-G----QSSDEGGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDL 77 (139)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTSS-S----TTSSTTEEEEECTTCGCEEEEETTTTEEEEETTSBHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCcc-c----ccccCCcEEEeeccccccccccccceeEEEeccccchhc
Confidence 58999999999999999999999999985432111 0 00001111122 2232233444678888899988877
Q ss_pred HHHHH
Q 020510 254 LKAAE 258 (325)
Q Consensus 254 ~~Aa~ 258 (325)
.+.++
T Consensus 78 ~~~l~ 82 (139)
T PF01565_consen 78 YEALA 82 (139)
T ss_dssp HHHHH
T ss_pred ccccc
Confidence 76543
No 189
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=68.66 E-value=47 Score=34.42 Aligned_cols=109 Identities=14% Similarity=0.074 Sum_probs=61.4
Q ss_pred eeechhhHHHHHHHHHHHhcc----CC-eeEEecccccHH--H-HHHHHHHHHHhhccccCCCCccCCEEEEeCC-CCCC
Q 020510 86 VLDTPITEAGFTGIGVGAAYY----GL-KPVVEFMTFNFS--M-QAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAA 156 (325)
Q Consensus 86 ~i~~GIaE~~~vg~A~GlA~~----G~-~p~v~~~~~~f~--~-ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-G~~~ 156 (325)
++..|+.= +.+++|.|+|.+ |. ..+++.+ .+.. . .++|.+.+ ++. ++.|++++..+ +.+.
T Consensus 109 ~~~~g~~~-~~ls~A~G~A~A~k~~~~~~~vv~~i-GDG~~~eG~~~EAln~-A~~--------~k~~li~Ii~dN~~si 177 (581)
T PRK12315 109 FFTVGHTS-TSIALATGLAKARDLKGEKGNIIAVI-GDGSLSGGLALEGLNN-AAE--------LKSNLIIIVNDNQMSI 177 (581)
T ss_pred CcCCCcHH-HHHHHHHHHHHHHHhcCCCCeEEEEE-CchhhhcchHHHHHHH-HHh--------hCCCEEEEEECCCCcC
Confidence 34666643 467788888755 32 2344344 4432 2 67887744 664 35788887654 3321
Q ss_pred --CCC-CCcch---------HHHHHHhcC--CCcEEEeeCCHHHHHHHHHHhHhCCCcEEEEe
Q 020510 157 --GVG-AQHSH---------CYAAWYASV--PGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (325)
Q Consensus 157 --g~G-~tHs~---------~~~a~~~~i--P~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir~ 205 (325)
..+ .++.. .....+.++ +.+.++...|..++..+++.+.+.++|++|-.
T Consensus 178 ~~~~~~~~~~l~~~~~~~~~~~~~~~~a~G~~~~~v~DG~D~~~l~~a~~~a~~~~gP~~i~~ 240 (581)
T PRK12315 178 AENHGGLYKNLKELRDTNGQSENNLFKAMGLDYRYVEDGNDIESLIEAFKEVKDIDHPIVLHI 240 (581)
T ss_pred CCCCchhhhhhhhhhhcccccHHHHHHhcCCeEEEeeCCCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 111 11101 112456654 44444556677777788887766678999854
No 190
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=68.37 E-value=55 Score=33.78 Aligned_cols=111 Identities=14% Similarity=0.020 Sum_probs=65.8
Q ss_pred CCceeechh--hHHHHHHHHHHHhccC-CeeEEecccccH-HHHHHHHHHHHHhhccccCCCCccCCEEEEeC-CCCCC-
Q 020510 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTFNF-SMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAA- 156 (325)
Q Consensus 83 p~R~i~~GI--aE~~~vg~A~GlA~~G-~~p~v~~~~~~f-~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G~~~- 156 (325)
|.+|++.+- +=-..++.|.|++++- -|+++++. .+. .+.....|-. +.. .++|++++.- ++.++
T Consensus 427 p~~~~~~~~~gsmG~glpaaiGa~lA~p~r~Vv~i~-GDGsf~m~~~eL~T-a~r--------~~lpviivV~NN~~~~~ 496 (587)
T PRK06965 427 PRRWINSGGLGTMGVGLPYAMGIKMAHPDDDVVCIT-GEGSIQMCIQELST-CLQ--------YDTPVKIISLNNRYLGM 496 (587)
T ss_pred CCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEE-cchhhhcCHHHHHH-HHH--------cCCCeEEEEEECCcchH
Confidence 789997643 4445567788888773 35566555 442 2333333332 332 4777666543 33211
Q ss_pred --------CCCC---C---cchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhC-CCcEEEE
Q 020510 157 --------GVGA---Q---HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-PDPVVFL 204 (325)
Q Consensus 157 --------g~G~---t---Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-~~Pv~ir 204 (325)
..+. + +...+..+.+++ |+.-+.-.+..|+...++.+++. ++|++|-
T Consensus 497 i~~~q~~~~~~~~~~~~~~~~~d~~~iA~a~-G~~~~~v~~~~eL~~al~~a~~~~~~p~lie 558 (587)
T PRK06965 497 VRQWQEIEYSKRYSHSYMDALPDFVKLAEAY-GHVGMRIEKTSDVEPALREALRLKDRTVFLD 558 (587)
T ss_pred HHHHHHHhcCCCccccCCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhcCCCcEEEE
Confidence 0011 1 101223555666 77888899999999999999984 7899985
No 191
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=68.26 E-value=49 Score=34.10 Aligned_cols=111 Identities=16% Similarity=0.132 Sum_probs=64.3
Q ss_pred CCceeechh--hHHHHHHHHHHHhccC-CeeEEecccccH-HHHHHHHHHHHHhhccccCCCCccCCEEEEeC-C-CCCC
Q 020510 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTFNF-SMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N-GAAA 156 (325)
Q Consensus 83 p~R~i~~GI--aE~~~vg~A~GlA~~G-~~p~v~~~~~~f-~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~-G~~~ 156 (325)
|.+|++.+- +=-..++.|.|++++. -++++++. .+. ++.....+-. +.. .++|++++.. + +...
T Consensus 409 p~~~~~~~~~gsmG~~lpaaiGa~la~p~~~Vv~i~-GDGsf~m~~~eL~T-a~~--------~~lpv~~vV~NN~~~g~ 478 (586)
T PRK06276 409 PRSFISSGGLGTMGFGFPAAIGAKVAKPDANVIAIT-GDGGFLMNSQELAT-IAE--------YDIPVVICIFDNRTLGM 478 (586)
T ss_pred CCeEEcCCCccccccchhHHHhhhhhcCCCcEEEEE-cchHhhccHHHHHH-HHH--------hCCCeEEEEEeCCchHH
Confidence 788887542 3333667888887763 34555444 442 2222222322 333 4677665532 2 2210
Q ss_pred ---------C---CCCCcc-h-HHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510 157 ---------G---VGAQHS-H-CYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 157 ---------g---~G~tHs-~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir 204 (325)
+ .+..+. . .+.++..++ |..-+.-.+++|++..++.+++.++|.+|-
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lIe 539 (586)
T PRK06276 479 VYQWQNLYYGKRQSEVHLGETPDFVKLAESY-GVKADRVEKPDEIKEALKEAIKSGEPYLLD 539 (586)
T ss_pred HHHHHHHHhCCCcccccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 111111 1 233566666 777888899999999999999888999884
No 192
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=68.18 E-value=53 Score=33.81 Aligned_cols=116 Identities=19% Similarity=0.212 Sum_probs=63.9
Q ss_pred HHHHhCCCceeechhhHH--HHHHHHHHHhccC-CeeEEeccccc--HHHHHHHHHHHHHhhccccCCCCccCCEEEEeC
Q 020510 77 LLEKYGPERVLDTPITEA--GFTGIGVGAAYYG-LKPVVEFMTFN--FSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP 151 (325)
Q Consensus 77 ~~~~~gp~R~i~~GIaE~--~~vg~A~GlA~~G-~~p~v~~~~~~--f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~ 151 (325)
+.+-+.|.+|+..|--=. ..+..|.|+++.- -|+++++. .+ |++- ...+-. +.. .++|++++.-
T Consensus 392 ~~~~~~p~~~~~s~~~GtMG~glPaAIGAkla~P~r~Vv~i~-GDG~F~m~-~qEL~T-a~r--------~~lpv~ivv~ 460 (550)
T COG0028 392 YFDFYRPRRFLTSGGLGTMGFGLPAAIGAKLAAPDRKVVAIA-GDGGFMMN-GQELET-AVR--------YGLPVKIVVL 460 (550)
T ss_pred hcccCCCCcEEcCCCCccccchHHHHHHHHhhCCCCcEEEEE-cccHHhcc-HHHHHH-HHH--------hCCCEEEEEE
Confidence 333334788888643221 1234555555553 36777665 43 3333 333433 332 3567666532
Q ss_pred -CCCCCC--------CCC--C--cc-hH-HHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510 152 -NGAAAG--------VGA--Q--HS-HC-YAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 152 -~G~~~g--------~G~--t--Hs-~~-~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir 204 (325)
++..+- .+. + +. .. +..+..++ |++-+.-.+++|++..++.++..++|++|-
T Consensus 461 nN~~~g~v~~~q~~~~~~~~~~~~~~~~~f~klAea~-G~~g~~v~~~~el~~al~~al~~~~p~lid 527 (550)
T COG0028 461 NNGGYGMVRQWQELFYGGRYSGTDLGNPDFVKLAEAY-GAKGIRVETPEELEEALEEALASDGPVLID 527 (550)
T ss_pred ECCccccchHHHHHhcCCCcceeecCCccHHHHHHHc-CCeeEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 221100 011 1 11 12 33444444 777888889999999999999999998884
No 193
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=67.98 E-value=46 Score=34.47 Aligned_cols=113 Identities=19% Similarity=0.240 Sum_probs=62.9
Q ss_pred CCceeechhhHHHHHHHHHHHhccC-CeeEEecccccHHH--HHHHHHHHHHhhccccCCCCccCCEEEEeC-C-CC--C
Q 020510 83 PERVLDTPITEAGFTGIGVGAAYYG-LKPVVEFMTFNFSM--QAIDHIINSAAKSNYMSSGQISVPIVFRGP-N-GA--A 155 (325)
Q Consensus 83 p~R~i~~GIaE~~~vg~A~GlA~~G-~~p~v~~~~~~f~~--ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~-G~--~ 155 (325)
|.++++...+=-..++.|.|++... -++++++. .+... -....|.+ +.. .++|++++.- + +. .
T Consensus 395 p~~~~~~~~~mG~~~~~AiGa~~a~p~~~Vv~i~-GDG~f~~~g~~eL~t-av~--------~~~~i~~vVlnN~~~g~~ 464 (595)
T TIGR03336 395 PLGTVDTTLCMGASIGVASGLSKAGEKQRIVAFI-GDSTFFHTGIPGLIN-AVY--------NKANITVVILDNRITAMT 464 (595)
T ss_pred CccccceeeccCchHHHHhhhhhcCCCCCEEEEe-ccchhhhcCHHHHHH-HHH--------cCCCeEEEEEcCcceecc
Confidence 5566665322223334666666553 46777665 54322 22455554 332 4667655532 2 21 1
Q ss_pred CCC-----CCC------cchHHHHHHhc--CCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEEe
Q 020510 156 AGV-----GAQ------HSHCYAAWYAS--VPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (325)
Q Consensus 156 ~g~-----G~t------Hs~~~~a~~~~--iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir~ 205 (325)
.+. +.+ +..++..+.+. ++...|..|.+.+|+..+++++++.++|.+|..
T Consensus 465 ~~q~~~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~v~~~~~l~~l~~al~~a~~~~gp~li~v 527 (595)
T TIGR03336 465 GHQPNPGTGVTGMGEATKEISIEELCRASGVEFVEVVDPLNVKETIEVFKAALAAEGVSVIIA 527 (595)
T ss_pred CCCCCCCCCCCCCCCcCCCcCHHHHHHHcCCCEEEEeCcCCHHHHHHHHHHHHhcCCCEEEEE
Confidence 110 000 11123455554 567788888888999999999999889998864
No 194
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=67.77 E-value=74 Score=27.39 Aligned_cols=37 Identities=11% Similarity=-0.038 Sum_probs=29.3
Q ss_pred HHHhcC---CCcEEEeeCCHHHHHHHHHHhHh-CCCcEEEE
Q 020510 168 AWYASV---PGLKVLSPYSSEDARGLLKAAIR-DPDPVVFL 204 (325)
Q Consensus 168 a~~~~i---P~~~V~~P~d~~e~~~~l~~a~~-~~~Pv~ir 204 (325)
.+.... |++......+++|+...++++++ .++|++|-
T Consensus 130 ~ia~a~G~~~~~~~~~v~~~~el~~al~~a~~~~~~p~lie 170 (183)
T cd02005 130 KLPEVFGGGGGGLSFRVKTEGELDEALKDALFNRDKLSLIE 170 (183)
T ss_pred HHHHHhCCCccccEEEecCHHHHHHHHHHHHhcCCCcEEEE
Confidence 455554 24677888999999999999998 78999884
No 195
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=67.71 E-value=28 Score=27.87 Aligned_cols=58 Identities=19% Similarity=0.175 Sum_probs=38.1
Q ss_pred CcEEEEEec--h-hHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHh-CCCeEEEEecCC
Q 020510 239 KDVTITAFS--K-IVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVR-KTNRLVTVEEGF 300 (325)
Q Consensus 239 ~dv~Iia~G--~-~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~-~~~~vvvvEe~~ 300 (325)
.++.|++.+ . ....+++.++.|+++|+.+.+ |.. +.+.. .+..+-+ +...++++.+..
T Consensus 27 ~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~-d~~--~sl~k-qlk~A~k~g~~~~iiiG~~e 88 (121)
T cd00858 27 IKVAVLPLVKRDELVEIAKEISEELRELGFSVKY-DDS--GSIGR-RYARQDEIGTPFCVTVDFDT 88 (121)
T ss_pred cEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEE-eCC--CCHHH-HHHHhHhcCCCEEEEECcCc
Confidence 467888887 4 456889999999999999988 333 44443 3443332 334567776553
No 196
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=66.43 E-value=43 Score=31.67 Aligned_cols=142 Identities=18% Similarity=0.081 Sum_probs=74.3
Q ss_pred cHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhh--H-HHHHHHHHHHhccC-CeeEEe
Q 020510 38 MVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPIT--E-AGFTGIGVGAAYYG-LKPVVE 113 (325)
Q Consensus 38 s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIa--E-~~~vg~A~GlA~~G-~~p~v~ 113 (325)
..-.++.++|.++-...+++++++ |++-++ .. | +|++..-- = -.++.+|.|++++. -+++++
T Consensus 28 ~i~~~i~~al~~l~l~p~d~vivs-diG~s~-----------~~-~-~yl~~~~~~g~mG~alpaAiGaklA~pd~~VV~ 93 (301)
T PRK05778 28 GILNAIIQALAELGLDPDKVVVVS-GIGCSS-----------KI-P-GYFLSHGLHTLHGRAIAFATGAKLANPDLEVIV 93 (301)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEe-CCcHhh-----------hh-h-hhcccCccchhhccHHHHHHHHHHHCCCCcEEE
Confidence 355667777776633334554443 665321 11 2 13332110 0 22455777777663 456665
Q ss_pred cccccHH--HHHHHHHHHHHhhccccCCCCccCCEEEEeC-C---CCCCCC-------CC---------C-cchHHHHHH
Q 020510 114 FMTFNFS--MQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N---GAAAGV-------GA---------Q-HSHCYAAWY 170 (325)
Q Consensus 114 ~~~~~f~--~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~---G~~~g~-------G~---------t-Hs~~~~a~~ 170 (325)
+. .+.. .-....+.+ ++. .++|++++.. + |.+.+. |. . +.-++..+.
T Consensus 94 i~-GDG~~~~mg~~eL~t-A~r--------~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g~~~~~~~~g~~~~~~d~~~lA 163 (301)
T PRK05778 94 VG-GDGDLASIGGGHFIH-AGR--------RNIDITVIVENNGIYGLTKGQASPTTPEGSKTKTAPYGNIEPPIDPCALA 163 (301)
T ss_pred Ee-CccHHHhccHHHHHH-HHH--------HCCCcEEEEEeCchhhcccCcccCCcCCCcccccccCCCcCCCCCHHHHH
Confidence 54 4432 344455544 343 4777666543 2 222111 10 0 001223444
Q ss_pred hcCCCcEEE---eeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510 171 ASVPGLKVL---SPYSSEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 171 ~~iP~~~V~---~P~d~~e~~~~l~~a~~~~~Pv~ir 204 (325)
.+. |...+ ...++.|+..+++.|++.++|++|-
T Consensus 164 ~a~-G~~~va~~~v~~~~eL~~ai~~A~~~~GpalIe 199 (301)
T PRK05778 164 LAA-GATFVARSFAGDVKQLVELIKKAISHKGFAFID 199 (301)
T ss_pred HHC-CCCEEEEeccCCHHHHHHHHHHHHhCCCCEEEE
Confidence 444 44433 6899999999999999999999985
No 197
>PRK10853 putative reductase; Provisional
Probab=66.41 E-value=12 Score=30.24 Aligned_cols=43 Identities=21% Similarity=0.212 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCC
Q 020510 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN 291 (325)
Q Consensus 248 ~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~ 291 (325)
.....+.+|.+.|+++|++.+++|+.. .|++.+.|.+.+++.+
T Consensus 8 ~~C~t~rkA~~~L~~~~i~~~~~d~~k-~p~s~~eL~~~l~~~g 50 (118)
T PRK10853 8 KNCDTIKKARRWLEAQGIDYRFHDYRV-DGLDSELLQGFIDELG 50 (118)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEeehcc-CCcCHHHHHHHHHHcC
Confidence 344678889999999999999999986 7999999888886543
No 198
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=65.40 E-value=20 Score=30.80 Aligned_cols=51 Identities=20% Similarity=0.378 Sum_probs=34.0
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCCeEEE
Q 020510 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVT 295 (325)
Q Consensus 237 ~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvv 295 (325)
+|++++||+.|.++... +++.|.++|.++.+++-++ +.+.+.++..+-||+
T Consensus 43 ~gk~vlViG~G~~~G~~--~a~~L~~~g~~V~v~~r~~------~~l~~~l~~aDiVIs 93 (168)
T cd01080 43 AGKKVVVVGRSNIVGKP--LAALLLNRNATVTVCHSKT------KNLKEHTKQADIVIV 93 (168)
T ss_pred CCCEEEEECCcHHHHHH--HHHHHhhCCCEEEEEECCc------hhHHHHHhhCCEEEE
Confidence 45788999998876643 4567777888877777432 445566766664443
No 199
>PRK06154 hypothetical protein; Provisional
Probab=65.37 E-value=82 Score=32.39 Aligned_cols=111 Identities=19% Similarity=0.039 Sum_probs=64.2
Q ss_pred CCceeechh--hHHHHHHHHHHHhccC-CeeEEecccccH-HHHHHHHHHHHHhhccccCCCCccCCEEEEeC-CCCCCC
Q 020510 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTFNF-SMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAG 157 (325)
Q Consensus 83 p~R~i~~GI--aE~~~vg~A~GlA~~G-~~p~v~~~~~~f-~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G~~~g 157 (325)
|.+|+..+- +=-..+..|.|++++- -++++++. .+. ++.....+-. +.. .++|++++.. ++.++.
T Consensus 421 p~~~~~~~~~gsmG~glpaaiGa~la~p~r~Vv~i~-GDG~f~m~~~EL~T-a~r--------~~lpi~~vV~NN~~yg~ 490 (565)
T PRK06154 421 PGSYLGWGKTTQLGYGLGLAMGAKLARPDALVINLW-GDAAFGMTGMDFET-AVR--------ERIPILTILLNNFSMGG 490 (565)
T ss_pred CCeEEccCCCcccccHHHHHHHHHHhCCCCcEEEEE-cchHHhccHHHHHH-HHH--------hCCCeEEEEEECCccce
Confidence 789987532 1122455667777663 46666665 442 3333333433 332 4788766543 222210
Q ss_pred --C-----C-----CCcchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHh---CCCcEEEE
Q 020510 158 --V-----G-----AQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR---DPDPVVFL 204 (325)
Q Consensus 158 --~-----G-----~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~---~~~Pv~ir 204 (325)
. + ..+.-.+.++..++ |+.-+.-.+++|+...++.++. .++|++|-
T Consensus 491 ~~~~~~~~~~~~~~~~~~~df~~lA~a~-G~~g~~V~~~~el~~al~~a~~~~~~~~p~lIe 551 (565)
T PRK06154 491 YDKVMPVSTTKYRATDISGDYAAIARAL-GGYGERVEDPEMLVPALLRALRKVKEGTPALLE 551 (565)
T ss_pred eehhhhhhcCcccccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhhccCCCeEEEE
Confidence 0 1 11111223566666 7788888999999999999986 57799885
No 200
>PRK10026 arsenate reductase; Provisional
Probab=65.18 E-value=20 Score=29.97 Aligned_cols=43 Identities=16% Similarity=0.290 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCC
Q 020510 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN 291 (325)
Q Consensus 248 ~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~ 291 (325)
.....+.+|.+.|+++|++.+++|+.. .|++.+.|.+.+++.+
T Consensus 10 p~Cst~RKA~~wL~~~gi~~~~~d~~~-~ppt~~eL~~~l~~~g 52 (141)
T PRK10026 10 PACGTSRNTLEMIRNSGTEPTIIHYLE-TPPTRDELVKLIADMG 52 (141)
T ss_pred CCCHHHHHHHHHHHHCCCCcEEEeeeC-CCcCHHHHHHHHHhCC
Confidence 556778899999999999999999987 7999999988888654
No 201
>PRK05899 transketolase; Reviewed
Probab=65.12 E-value=44 Score=34.85 Aligned_cols=38 Identities=13% Similarity=0.265 Sum_probs=31.7
Q ss_pred HHHHhcCCCcEEEeeC--CHHHHHHHHHHhHhCCCcEEEEe
Q 020510 167 AAWYASVPGLKVLSPY--SSEDARGLLKAAIRDPDPVVFLE 205 (325)
Q Consensus 167 ~a~~~~iP~~~V~~P~--d~~e~~~~l~~a~~~~~Pv~ir~ 205 (325)
...++++ |+.++.-. |..++...++.+.+.++|++|..
T Consensus 206 ~~~~~a~-G~~~~~VdG~d~~~l~~al~~a~~~~~P~vI~v 245 (624)
T PRK05899 206 KKRFEAY-GWHVIEVDGHDVEAIDAAIEEAKASTKPTLIIA 245 (624)
T ss_pred HHHhccC-CCeEEEECCCCHHHHHHHHHHHHhcCCCEEEEE
Confidence 4677777 88888777 89999999999988889998864
No 202
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=64.05 E-value=18 Score=28.75 Aligned_cols=43 Identities=19% Similarity=0.273 Sum_probs=36.2
Q ss_pred hhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCC
Q 020510 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN 291 (325)
Q Consensus 248 ~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~ 291 (325)
.....+.+|.+.|++.|+++..+|+.. .|++.+.|.+.++..+
T Consensus 7 ~~C~t~rkA~~~L~~~~i~~~~~di~~-~~~t~~el~~~l~~~~ 49 (112)
T cd03034 7 PRCSKSRNALALLEEAGIEPEIVEYLK-TPPTAAELRELLAKLG 49 (112)
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEeccc-CCcCHHHHHHHHHHcC
Confidence 445678889999999999999999876 7999998888887665
No 203
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=63.99 E-value=27 Score=33.53 Aligned_cols=104 Identities=20% Similarity=0.199 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHhcc--CCeeEEecccccHH-H--HHHHHHHHHHhhccccCCCCccCCEEEEeCCCCCCCCCCCcch--
Q 020510 92 TEAGFTGIGVGAAYY--GLKPVVEFMTFNFS-M--QAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSH-- 164 (325)
Q Consensus 92 aE~~~vg~A~GlA~~--G~~p~v~~~~~~f~-~--ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~~g~G~tHs~-- 164 (325)
-+|-=+|..+++|.. +-.-++.+++.+.. + ..||.+-+ +++ +++|+|++.-+ -.+|.|++|..
T Consensus 168 GAQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~NM-A~L--------W~LP~IFvCEN-N~yGMGTs~~Ras 237 (394)
T KOG0225|consen 168 GAQIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAFNM-AAL--------WKLPVIFVCEN-NHYGMGTSAERAS 237 (394)
T ss_pred ccCCCccccHHHHHHhccCCceEEEEeccccccchhHHHHhhH-HHH--------hCCCEEEEEcc-CCCccCcchhhhh
Confidence 344445555566644 44455555555542 2 45665533 444 58999999753 12455666622
Q ss_pred -HHHHHHhc--CCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEeC
Q 020510 165 -CYAAWYAS--VPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLEN 206 (325)
Q Consensus 165 -~~~a~~~~--iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~ir~~ 206 (325)
+.+-+.|. |||+.| .--|.--++.+.++|.+ .++|+++-+.
T Consensus 238 a~teyykRG~yiPGl~V-dGmdvlaVr~a~KfA~~~~~~g~GPilmE~~ 285 (394)
T KOG0225|consen 238 ASTEYYKRGDYIPGLKV-DGMDVLAVREATKFAKKYALEGKGPILMEMD 285 (394)
T ss_pred cChHHHhccCCCCceEE-CCcchhhHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 22334443 898776 33344444455555544 4789998544
No 204
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=63.92 E-value=29 Score=33.16 Aligned_cols=77 Identities=10% Similarity=0.142 Sum_probs=53.4
Q ss_pred EEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCC--eEEEEecCCCCCCHHHHHH
Q 020510 233 KIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN--RLVTVEEGFPQHGVGAEIW 310 (325)
Q Consensus 233 ~vl~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~--~vvvvEe~~~~GGlg~~v~ 310 (325)
+++.+|+.++++.+|..-..+ ++.++.-|..+.++-...=.-.+.|.|.+.+..++ .+++....+ .-|+-+.+.
T Consensus 87 N~lePgd~vLv~~~G~wg~ra---~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv~hgds-STgV~q~~~ 162 (385)
T KOG2862|consen 87 NLLEPGDNVLVVSTGTWGQRA---ADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFVTHGDS-STGVLQDLL 162 (385)
T ss_pred hhcCCCCeEEEEEechHHHHH---HHHHHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEEEEecCc-cccccchHH
Confidence 455688899999999987765 45555568999999766667788899988888764 344444444 445655544
Q ss_pred HHH
Q 020510 311 CAF 313 (325)
Q Consensus 311 ~~l 313 (325)
+..
T Consensus 163 ~~~ 165 (385)
T KOG2862|consen 163 AIS 165 (385)
T ss_pred HHH
Confidence 433
No 205
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=63.83 E-value=18 Score=28.86 Aligned_cols=43 Identities=23% Similarity=0.315 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCC
Q 020510 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN 291 (325)
Q Consensus 248 ~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~ 291 (325)
.....+.+|.+.|+++|+++..+|+.. .|++.+.|.+.++..+
T Consensus 7 ~~C~t~rkA~~~L~~~~i~~~~~di~~-~p~t~~el~~~l~~~g 49 (114)
T TIGR00014 7 PRCSKSRNTLALLEDKGIEPEVVKYLK-NPPTKSELEAIFAKLG 49 (114)
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEeccC-CCcCHHHHHHHHHHcC
Confidence 455678889999999999999999986 7999999988887654
No 206
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=63.81 E-value=34 Score=24.75 Aligned_cols=55 Identities=25% Similarity=0.292 Sum_probs=34.7
Q ss_pred cEEEEEech-hHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhC-CCeEEEEe
Q 020510 240 DVTITAFSK-IVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRK-TNRLVTVE 297 (325)
Q Consensus 240 dv~Iia~G~-~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~-~~~vvvvE 297 (325)
++.|++.+. ....|++.++.|+++|+.+.+.... +.+ .+.+..+-+. ...++++.
T Consensus 3 ~v~i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~~~--~~~-~~~~~~a~~~~~~~~i~i~ 59 (91)
T cd00859 3 DVYVVPLGEGALSEALELAEQLRDAGIKAEIDYGG--RKL-KKQFKYADRSGARFAVILG 59 (91)
T ss_pred cEEEEEcChHHHHHHHHHHHHHHHCCCEEEEecCC--CCH-HHHHHHHHHcCCCEEEEEc
Confidence 677787776 4568999999999999988774322 233 3344433322 34556665
No 207
>PRK07524 hypothetical protein; Provisional
Probab=63.45 E-value=56 Score=33.17 Aligned_cols=110 Identities=21% Similarity=0.260 Sum_probs=61.5
Q ss_pred CCceee-ch-h-hHHHHHHHHHHHhccC-CeeEEeccccc--HHHHHHHHHHHHHhhccccCCCCccCCEEEEeC-C-CC
Q 020510 83 PERVLD-TP-I-TEAGFTGIGVGAAYYG-LKPVVEFMTFN--FSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N-GA 154 (325)
Q Consensus 83 p~R~i~-~G-I-aE~~~vg~A~GlA~~G-~~p~v~~~~~~--f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~-G~ 154 (325)
|.+|++ .+ . +=-..++.|.|++++. -++++++. .+ |.+.+.| +-. +.. .++|++++.. + +.
T Consensus 396 p~~~~~~~~~~g~mG~~lp~aiGa~lA~p~~~vv~i~-GDG~f~~~~~e-l~t-a~~--------~~lpi~~vV~NN~~~ 464 (535)
T PRK07524 396 PRRWFNASTGYGTLGYGLPAAIGAALGAPERPVVCLV-GDGGLQFTLPE-LAS-AVE--------ADLPLIVLLWNNDGY 464 (535)
T ss_pred CCceEeCCCCcccccchHHHHHHHHHhCCCCcEEEEE-cchHHhhhHHH-HHH-HHH--------hCCCeEEEEEECCch
Confidence 678886 21 1 1112456777777763 34555444 33 3333333 433 343 4778766532 2 22
Q ss_pred CC--------C---CCCC-cchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510 155 AA--------G---VGAQ-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 155 ~~--------g---~G~t-Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir 204 (325)
.. + .+.. |.-.+..+.+++ |+....-.++.|+...++++++.++|++|-
T Consensus 465 g~i~~~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 525 (535)
T PRK07524 465 GEIRRYMVARDIEPVGVDPYTPDFIALARAF-GCAAERVADLEQLQAALRAAFARPGPTLIE 525 (535)
T ss_pred HHHHHHHHHhcCCccccCCCCCCHHHHHHHC-CCcEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 10 0 1111 211223555555 566666789999999999999999999985
No 208
>TIGR03586 PseI pseudaminic acid synthase.
Probab=63.30 E-value=51 Score=31.63 Aligned_cols=72 Identities=17% Similarity=0.092 Sum_probs=48.3
Q ss_pred cEEEEEec-hhHHHHHHHHHHHHhcCC-cEEEEEeeeccCCCHH-----HHHHHHhCCCeEEEEecCCCCCCHHHHHHHH
Q 020510 240 DVTITAFS-KIVGLSLKAAEILAKEGI-SAEVINLRSIRPLDRS-----TINASVRKTNRLVTVEEGFPQHGVGAEIWCA 312 (325)
Q Consensus 240 dv~Iia~G-~~~~~a~~Aa~~L~~~Gi-~~~Vi~~~~l~P~d~~-----~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~ 312 (325)
+=+|+++| +...+...|++.+.+.|. ++.++++.+-+|-+.+ .|..+-+.++..|-+-||. .|..-.+++.
T Consensus 135 kPvilstG~~t~~Ei~~Av~~i~~~g~~~i~LlhC~s~YP~~~~~~nL~~i~~lk~~f~~pVG~SDHt--~G~~~~~aAv 212 (327)
T TIGR03586 135 KPIIMSTGIATLEEIQEAVEACREAGCKDLVLLKCTSSYPAPLEDANLRTIPDLAERFNVPVGLSDHT--LGILAPVAAV 212 (327)
T ss_pred CcEEEECCCCCHHHHHHHHHHHHHCCCCcEEEEecCCCCCCCcccCCHHHHHHHHHHhCCCEEeeCCC--CchHHHHHHH
Confidence 35578888 566899999999998887 7899888888886654 3443333455445366787 3554444444
Q ss_pred H
Q 020510 313 F 313 (325)
Q Consensus 313 l 313 (325)
.
T Consensus 213 a 213 (327)
T TIGR03586 213 A 213 (327)
T ss_pred H
Confidence 3
No 209
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=62.82 E-value=17 Score=35.62 Aligned_cols=52 Identities=33% Similarity=0.431 Sum_probs=41.9
Q ss_pred cEEEE---EechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCCeEE
Q 020510 240 DVTIT---AFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLV 294 (325)
Q Consensus 240 dv~Ii---a~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~vv 294 (325)
+|+|+ .||+.-..|..+++-|.+.|+++.++++.+- |.+.|.+.+-+++.++
T Consensus 248 ~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~~~---~~~eI~~~i~~a~~~v 302 (388)
T COG0426 248 KVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVINLEDA---DPSEIVEEILDAKGLV 302 (388)
T ss_pred eEEEEEecccCCHHHHHHHHHHHhhhcCCceEEEEcccC---CHHHHHHHHhhcceEE
Confidence 46666 5788889999999999999999999999986 6777777776666544
No 210
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=62.64 E-value=93 Score=31.92 Aligned_cols=110 Identities=16% Similarity=0.136 Sum_probs=62.7
Q ss_pred CCceeechh-hH-HHHHHHHHHHhccC-CeeEEeccccc--HHHHHHHHHHHHHhhccccCCCCccCCEEEEe--CCCCC
Q 020510 83 PERVLDTPI-TE-AGFTGIGVGAAYYG-LKPVVEFMTFN--FSMQAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGAA 155 (325)
Q Consensus 83 p~R~i~~GI-aE-~~~vg~A~GlA~~G-~~p~v~~~~~~--f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~--~~G~~ 155 (325)
|.+|+..+- .= -..++.|.|++++. -++++++. .+ |++-..| +- .+.. .++|++++. .++..
T Consensus 414 ~~~~~~~~~~g~mG~glpaAiGaala~p~~~vv~i~-GDGsf~m~~~e-L~-ta~r--------~~lpi~ivV~NN~~~~ 482 (571)
T PRK07710 414 PDKWVTSGGLGTMGFGLPAAIGAQLAKPDETVVAIV-GDGGFQMTLQE-LS-VIKE--------LSLPVKVVILNNEALG 482 (571)
T ss_pred CCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEE-cchHHhhhHHH-HH-HHHH--------hCCCeEEEEEECchHH
Confidence 678886532 11 12566777777663 24555554 44 3333322 32 2333 366665543 22321
Q ss_pred C--------CCCC---C---cchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510 156 A--------GVGA---Q---HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 156 ~--------g~G~---t---Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir 204 (325)
. ..+. . ..-.+..+.+++ |+.-+...+.+|+..+++++++.++|++|-
T Consensus 483 ~i~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 544 (571)
T PRK07710 483 MVRQWQEEFYNQRYSHSLLSCQPDFVKLAEAY-GIKGVRIDDELEAKEQLQHAIELQEPVVID 544 (571)
T ss_pred HHHHHHHHHhCCcceeccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 0000 0 101223555666 788888999999999999999988999985
No 211
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=62.34 E-value=26 Score=26.31 Aligned_cols=56 Identities=25% Similarity=0.324 Sum_probs=38.4
Q ss_pred cEEEEEech----hHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHh-CCCeEEEEec
Q 020510 240 DVTITAFSK----IVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVR-KTNRLVTVEE 298 (325)
Q Consensus 240 dv~Iia~G~----~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~-~~~~vvvvEe 298 (325)
++.|+..|. ....|.+.++.|.+.|+.+.+-+ .-..+. +.+.++-+ +...++++-+
T Consensus 1 qv~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~--~~~~~~-k~~~~a~~~g~p~~iiiG~ 61 (94)
T PF03129_consen 1 QVVIIPVGKKDEEIIEYAQELANKLRKAGIRVELDD--SDKSLG-KQIKYADKLGIPFIIIIGE 61 (94)
T ss_dssp SEEEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEES--SSSTHH-HHHHHHHHTTESEEEEEEH
T ss_pred CEEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEEC--CCCchh-HHHHHHhhcCCeEEEEECc
Confidence 477888888 45789999999999999988866 234444 34554443 3455676654
No 212
>COG0680 HyaD Ni,Fe-hydrogenase maturation factor [Energy production and conversion]
Probab=61.54 E-value=25 Score=30.05 Aligned_cols=56 Identities=20% Similarity=0.264 Sum_probs=37.9
Q ss_pred CcEEEEEechhHH----HHHHHHHHHHhcCC---cEEEEEeeeccCCCHHHHHHHHhCCCeEEEEec
Q 020510 239 KDVTITAFSKIVG----LSLKAAEILAKEGI---SAEVINLRSIRPLDRSTINASVRKTNRLVTVEE 298 (325)
Q Consensus 239 ~dv~Iia~G~~~~----~a~~Aa~~L~~~Gi---~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe 298 (325)
..++|+++|..+. -....+++|++..- +++|+|..+.-| + +...+..+++++++|=
T Consensus 2 ~~ilIlG~GN~L~~DDG~Gv~vae~L~~~~~~~~~v~vid~Gt~~~---~-l~~~l~~~d~vIIVDa 64 (160)
T COG0680 2 MRILILGVGNILMGDDGFGVRVAEKLKKRYKPPENVEVIDGGTAGP---N-LLGLLAGYDPVIIVDA 64 (160)
T ss_pred CeEEEEeeCCcccccCcccHHHHHHHHHhcCCCCCeEEEEcCCCcH---H-HHHHhcCCCcEEEEEe
Confidence 3578888887662 45567777776543 688999999743 2 2345667777888764
No 213
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=60.92 E-value=1.1e+02 Score=30.91 Aligned_cols=111 Identities=19% Similarity=0.184 Sum_probs=62.2
Q ss_pred CCceeechh-hHHHHHHHHHHHhccC-CeeEEecccccH-HHHHHHHHHHHHhhccccCCCCccCCEEEEeC-CC-CCC-
Q 020510 83 PERVLDTPI-TEAGFTGIGVGAAYYG-LKPVVEFMTFNF-SMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NG-AAA- 156 (325)
Q Consensus 83 p~R~i~~GI-aE~~~vg~A~GlA~~G-~~p~v~~~~~~f-~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G-~~~- 156 (325)
|.+|+..+. +=-..++.|.|+++.. -++++++. .+. .+.....+.. ++. .++|++++.- +| ...
T Consensus 398 ~~~~~~~~~g~mG~~lp~aiGa~la~p~~~vv~i~-GDG~f~~~~~eL~t-a~~--------~~lp~~~vv~NN~~~~~~ 467 (530)
T PRK07092 398 QGSFYTMASGGLGYGLPAAVGVALAQPGRRVIGLI-GDGSAMYSIQALWS-AAQ--------LKLPVTFVILNNGRYGAL 467 (530)
T ss_pred CCceEccCCCcccchHHHHHHHHHhCCCCeEEEEE-eCchHhhhHHHHHH-HHH--------hCCCcEEEEEeChHHHHH
Confidence 678886311 1113456777877663 34455454 432 2223333433 332 4677655532 23 211
Q ss_pred -------CCC-CC----cchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510 157 -------GVG-AQ----HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 157 -------g~G-~t----Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir 204 (325)
+.+ .. +.-.+..+.+.+ |+..+...+..|+...++.+.+.++|++|.
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~d~~~~a~~~-G~~~~~v~~~~~l~~al~~a~~~~~p~lie 526 (530)
T PRK07092 468 RWFAPVFGVRDVPGLDLPGLDFVALARGY-GCEAVRVSDAAELADALARALAADGPVLVE 526 (530)
T ss_pred HHHHHhhCCCCCCCCCCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 001 11 111233566666 778888889999999999999888999884
No 214
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=60.55 E-value=70 Score=27.94 Aligned_cols=69 Identities=9% Similarity=0.078 Sum_probs=45.6
Q ss_pred echhHHHHHHHHHHHHh-cCCcEEEEEeeeccCCCH--------------HHHHHHHhCCCeEEEEecCCCCCCHHHHHH
Q 020510 246 FSKIVGLSLKAAEILAK-EGISAEVINLRSIRPLDR--------------STINASVRKTNRLVTVEEGFPQHGVGAEIW 310 (325)
Q Consensus 246 ~G~~~~~a~~Aa~~L~~-~Gi~~~Vi~~~~l~P~d~--------------~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~ 310 (325)
+|.+-..|..+++.+++ .|+++++++++...|-+. .. .+.+..++.|++.=- ...|++...+.
T Consensus 12 ~G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~aD~ii~gsP-ty~g~~~~~lk 89 (200)
T PRK03767 12 YGHIETMAEAVAEGAREVAGAEVTIKRVPETVPEEVAKKAGGKTDQAAPVAT-PDELADYDAIIFGTP-TRFGNMAGQMR 89 (200)
T ss_pred CCHHHHHHHHHHHHHhhcCCcEEEEEeccccCCHHHHHhcCCCcccCCCccC-HHHHHhCCEEEEEec-ccCCCchHHHH
Confidence 45667778888888887 899999999975433111 11 234556666554443 44788988888
Q ss_pred HHHcCC
Q 020510 311 CAFFPP 316 (325)
Q Consensus 311 ~~l~~~ 316 (325)
.++...
T Consensus 90 ~fld~~ 95 (200)
T PRK03767 90 NFLDQT 95 (200)
T ss_pred HHHHHh
Confidence 777653
No 215
>PLN02790 transketolase
Probab=60.53 E-value=46 Score=35.04 Aligned_cols=73 Identities=11% Similarity=0.102 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhhccccCCCCccCC-EEEEeCC-CCCCCCCCCc---chHHHHHHhcCCCcEEEee----CCHHHHHHHHH
Q 020510 122 QAIDHIINSAAKSNYMSSGQISVP-IVFRGPN-GAAAGVGAQH---SHCYAAWYASVPGLKVLSP----YSSEDARGLLK 192 (325)
Q Consensus 122 ra~dqi~~~~a~~~~~~~~~~~~p-vv~~~~~-G~~~g~G~tH---s~~~~a~~~~iP~~~V~~P----~d~~e~~~~l~ 192 (325)
.++|.+.. ++. .++| ++++..+ +.. -.+.+. .......++++ |+.++.+ .|.+++..+++
T Consensus 153 ~~~EAl~~-A~~--------~~L~nli~i~d~N~~~-i~~~~~~~~~~~~~~~f~a~-G~~~~~vdgg~hd~~~l~~a~~ 221 (654)
T PLN02790 153 ISNEAASL-AGH--------WGLGKLIVLYDDNHIS-IDGDTEIAFTEDVDKRYEAL-GWHTIWVKNGNTDYDEIRAAIK 221 (654)
T ss_pred HHHHHHHH-HHH--------hCCCCEEEEEecCCcc-ccCCcccccchhHHHHHHHc-CCeEEEECCCCCCHHHHHHHHH
Confidence 66777643 443 4676 5555443 322 122222 12334677877 9999998 46778888888
Q ss_pred HhHh-CCCcEEEEe
Q 020510 193 AAIR-DPDPVVFLE 205 (325)
Q Consensus 193 ~a~~-~~~Pv~ir~ 205 (325)
.+.+ .++|++|..
T Consensus 222 ~a~~~~~~P~lI~~ 235 (654)
T PLN02790 222 EAKAVTDKPTLIKV 235 (654)
T ss_pred HHHhcCCCeEEEEE
Confidence 8776 578999864
No 216
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=60.47 E-value=71 Score=32.65 Aligned_cols=37 Identities=16% Similarity=0.075 Sum_probs=30.3
Q ss_pred HHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEEe
Q 020510 168 AWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (325)
Q Consensus 168 a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir~ 205 (325)
.+.+++ |+....-.+++|+...++.+++.++|++|..
T Consensus 499 ~~a~a~-G~~~~~v~~~~el~~al~~a~~~~gp~li~v 535 (557)
T PRK08199 499 ALARAY-GGHGETVERTEDFAPAFERALASGKPALIEI 535 (557)
T ss_pred HHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 556665 6777778899999999999998889998853
No 217
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=60.31 E-value=41 Score=34.78 Aligned_cols=37 Identities=19% Similarity=0.227 Sum_probs=30.1
Q ss_pred HHHHhcCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEE
Q 020510 167 AAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFL 204 (325)
Q Consensus 167 ~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~ir 204 (325)
..+.+++ |..-..-.+++|+...++.+++ .++|.+|-
T Consensus 511 ~~lA~a~-G~~~~~V~~~~eL~~al~~a~~~~~~~~~p~lIe 551 (588)
T TIGR01504 511 VKVAEGL-GCKAIRVFKPEEIAPAFEQAKALMAEHRVPVVVE 551 (588)
T ss_pred HHHHHHC-CCEEEEECCHHHHHHHHHHHHhhcccCCCcEEEE
Confidence 3566666 7777778999999999999995 67899884
No 218
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=58.91 E-value=24 Score=25.27 Aligned_cols=66 Identities=14% Similarity=0.063 Sum_probs=41.6
Q ss_pred cEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCC-eEEEEecCCCCCCHHHH
Q 020510 240 DVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN-RLVTVEEGFPQHGVGAE 308 (325)
Q Consensus 240 dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~-~vvvvEe~~~~GGlg~~ 308 (325)
+++|.+. +....+.+|.+.|++.|++.+.+|+..-.+ ..+.+.+...... .++++.+ ...||.-+.
T Consensus 2 ~v~ly~~-~~C~~C~ka~~~L~~~gi~~~~~di~~~~~-~~~el~~~~g~~~vP~v~i~~-~~iGg~~~~ 68 (73)
T cd03027 2 RVTIYSR-LGCEDCTAVRLFLREKGLPYVEINIDIFPE-RKAELEERTGSSVVPQIFFNE-KLVGGLTDL 68 (73)
T ss_pred EEEEEec-CCChhHHHHHHHHHHCCCceEEEECCCCHH-HHHHHHHHhCCCCcCEEEECC-EEEeCHHHH
Confidence 3555544 455678889999999999999999875322 2334444433322 3555655 457887544
No 219
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=58.81 E-value=17 Score=26.31 Aligned_cols=66 Identities=11% Similarity=0.116 Sum_probs=41.4
Q ss_pred chhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCC----CeEEEEecCCCCCCHHHHHHHHHcCCCcc
Q 020510 247 SKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKT----NRLVTVEEGFPQHGVGAEIWCAFFPPAWL 319 (325)
Q Consensus 247 G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~----~~vvvvEe~~~~GGlg~~v~~~l~~~~~~ 319 (325)
-.....+.+|.+.|++.|++.+.+|+.. +.+...+..+.+ -..|++++. ..||+.+... +.++|-+
T Consensus 6 ~~~Cp~C~~a~~~L~~~~i~~~~~di~~----~~~~~~~~~~~~g~~~vP~i~i~g~-~igg~~~~~~--~~~~g~l 75 (79)
T TIGR02181 6 KPYCPYCTRAKALLSSKGVTFTEIRVDG----DPALRDEMMQRSGRRTVPQIFIGDV-HVGGCDDLYA--LDREGKL 75 (79)
T ss_pred cCCChhHHHHHHHHHHcCCCcEEEEecC----CHHHHHHHHHHhCCCCcCEEEECCE-EEcChHHHHH--HHHcCCh
Confidence 3556778888899999999999999874 223333332221 235667654 4788866554 3344443
No 220
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=58.81 E-value=27 Score=28.77 Aligned_cols=43 Identities=28% Similarity=0.241 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCC
Q 020510 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN 291 (325)
Q Consensus 248 ~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~ 291 (325)
.....+.+|.+.|+++|++.+++|+.. .|++.+.|.+.+++.+
T Consensus 8 ~~C~~crkA~~~L~~~~i~~~~~d~~~-~~~s~~eL~~~l~~~~ 50 (132)
T PRK13344 8 SSCTSCKKAKTWLNAHQLSYKEQNLGK-EPLTKEEILAILTKTE 50 (132)
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEECCC-CCCCHHHHHHHHHHhC
Confidence 556778889999999999999999875 7899998888887753
No 221
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=58.58 E-value=69 Score=32.60 Aligned_cols=147 Identities=17% Similarity=0.127 Sum_probs=82.9
Q ss_pred HHHHHHHHHhc-C-CcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeeEEecccccH
Q 020510 43 LNSALDEEMSA-D-PKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNF 119 (325)
Q Consensus 43 ~~~~L~~l~~~-d-~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~~~~~~f 119 (325)
+++.|-+.+.. + +.++.+-.|-. ..+. ++.++.+.=|++.+ -+|-|+.=+|=|.|+. |.-.++.|| ...
T Consensus 6 ~G~YLf~RL~q~gvksvfgVPGDFN-----L~LL-D~l~~~~~lrwvGn-~NELNaAYAADGYAR~~Gi~a~VtTf-gVG 77 (561)
T KOG1184|consen 6 LGEYLFRRLVQAGVKTVFGVPGDFN-----LSLL-DKLYAVPGLRWVGN-CNELNAAYAADGYARSKGIGACVTTF-GVG 77 (561)
T ss_pred HHHHHHHHHHHcCCceeEECCCccc-----HHHH-HHhhhcCCceeecc-cchhhhhhhhcchhhhcCceEEEEEe-ccc
Confidence 56666655443 4 44555544422 1232 33344523466654 6899999999999987 888888887 555
Q ss_pred HHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCC-CCCCC----Ccc---hHHH---HHHhcCCCcEEEeeCCHHHHH
Q 020510 120 SMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA-AGVGA----QHS---HCYA---AWYASVPGLKVLSPYSSEDAR 188 (325)
Q Consensus 120 ~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~-~g~G~----tHs---~~~~---a~~~~iP~~~V~~P~d~~e~~ 188 (325)
-+-|++-|- -+|. -++||+.+.. .+. ...+. +|. ..+. .|+..+ -....+=.|.+++-
T Consensus 78 eLSAlNGIA--GsYA-------E~vpVihIVG-~Pnt~~q~t~~LLHHTLG~gDF~vf~rm~k~v-sc~~a~I~~~e~A~ 146 (561)
T KOG1184|consen 78 ELSALNGIA--GAYA-------ENVPVIHIVG-VPNTNDQGTQRLLHHTLGNGDFTVFHRMFKKV-TCYTAMINDIEDAP 146 (561)
T ss_pred hhhhhcccc--hhhh-------hcCCEEEEEC-CCCcccccccchheeecCCCchHHHHHHHHhh-hhHHhhhcCHhhhH
Confidence 666766653 2443 6899888752 222 11222 221 1222 344333 12333444666666
Q ss_pred HHHHH----hHhCCCcEEEEeCcc
Q 020510 189 GLLKA----AIRDPDPVVFLENEL 208 (325)
Q Consensus 189 ~~l~~----a~~~~~Pv~ir~~~~ 208 (325)
+.++. ++...+||||-.+..
T Consensus 147 ~~ID~aI~~~~~~~rPVYi~iP~n 170 (561)
T KOG1184|consen 147 EQIDKAIRTALKESKPVYIGVPAN 170 (561)
T ss_pred HHHHHHHHHHHHhcCCeEEEeecc
Confidence 55554 455689999986644
No 222
>PRK11269 glyoxylate carboligase; Provisional
Probab=58.50 E-value=94 Score=32.06 Aligned_cols=111 Identities=16% Similarity=0.125 Sum_probs=64.0
Q ss_pred CCceeechh-hHHH-HHHHHHHHhccC-CeeEEecccccH-HHHHHHHHHHHHhhccccCCCCccCCEEEEeC-CCCCC-
Q 020510 83 PERVLDTPI-TEAG-FTGIGVGAAYYG-LKPVVEFMTFNF-SMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAA- 156 (325)
Q Consensus 83 p~R~i~~GI-aE~~-~vg~A~GlA~~G-~~p~v~~~~~~f-~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G~~~- 156 (325)
|.+|++.|- .=.+ .+..|.|++++. -++++++. .+. .+.....+-. +.. .++|++++.. ++.++
T Consensus 409 p~~~~~~~~~G~mG~glpaAiGa~la~p~r~Vv~i~-GDG~f~m~~~eL~T-a~~--------~~lpv~~vV~NN~~~g~ 478 (591)
T PRK11269 409 PRHWINCGQAGPLGWTIPAALGVRAADPDRNVVALS-GDYDFQFLIEELAV-GAQ--------FNLPYIHVLVNNAYLGL 478 (591)
T ss_pred CCcEEeCCccccccchhhhHHhhhhhCCCCcEEEEE-ccchhhcCHHHHHH-HHH--------hCCCeEEEEEeCCchhH
Confidence 788888652 2222 566778877774 46666665 442 2223333332 332 4677666543 22111
Q ss_pred ------C--CCC---C------------cchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEE
Q 020510 157 ------G--VGA---Q------------HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFL 204 (325)
Q Consensus 157 ------g--~G~---t------------Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~ir 204 (325)
+ ... + +.-.+..+.+++ |+.-....+++|+...++.+++ .++|.+|-
T Consensus 479 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~~~~gp~lie 552 (591)
T PRK11269 479 IRQAQRAFDMDYCVQLAFENINSPELNGYGVDHVKVAEGL-GCKAIRVFKPEDIAPALEQAKALMAEFRVPVVVE 552 (591)
T ss_pred HHHHHHHhccCccceeeccccccccccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhhcccCCCcEEEE
Confidence 0 000 0 101223555666 7778888999999999999985 67899884
No 223
>PRK08322 acetolactate synthase; Reviewed
Probab=57.95 E-value=97 Score=31.47 Aligned_cols=111 Identities=17% Similarity=0.131 Sum_probs=62.3
Q ss_pred CCceeec-hhhHH-HHHHHHHHHhccC-CeeEEecccccH-HHHHHHHHHHHHhhccccCCCCccCCEEEEe--CCCCCC
Q 020510 83 PERVLDT-PITEA-GFTGIGVGAAYYG-LKPVVEFMTFNF-SMQAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGAAA 156 (325)
Q Consensus 83 p~R~i~~-GIaE~-~~vg~A~GlA~~G-~~p~v~~~~~~f-~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~--~~G~~~ 156 (325)
|.+|+.. |..=. ..++.|.|++++. -++++++. .+. ++.....+-. +.. .++|++++. .++...
T Consensus 396 ~~~~~~~~~~g~mG~~lpaaiGa~la~p~~~vv~i~-GDGsf~m~~~eL~T-a~~--------~~lpv~iiV~NN~~~g~ 465 (547)
T PRK08322 396 PNTCLLDNALATMGAGLPSAIAAKLVHPDRKVLAVC-GDGGFMMNSQELET-AVR--------LGLPLVVLILNDNAYGM 465 (547)
T ss_pred CCCEEcCCCcccccchhHHHHHHHHhCCCCcEEEEE-cchhHhccHHHHHH-HHH--------hCCCeEEEEEeCCCcch
Confidence 6777743 32211 2456777877763 35565554 442 2222222322 232 367766553 223220
Q ss_pred ---------C--CCCC-cchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510 157 ---------G--VGAQ-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 157 ---------g--~G~t-Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir 204 (325)
+ .+.. |.-.+..+.++. |+.-+...+++|+...++++++.++|++|-
T Consensus 466 ~~~~~~~~~~~~~~~~~~~~df~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lIe 524 (547)
T PRK08322 466 IRWKQENMGFEDFGLDFGNPDFVKYAESY-GAKGYRVESADDLLPTLEEALAQPGVHVID 524 (547)
T ss_pred HHHHHHhhcCCcccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 1111 111233555655 778888899999999999999988999884
No 224
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=57.93 E-value=2.2e+02 Score=28.94 Aligned_cols=149 Identities=9% Similarity=0.038 Sum_probs=75.6
Q ss_pred ccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHH----HHHHHHhccC-CeeE
Q 020510 37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFT----GIGVGAAYYG-LKPV 111 (325)
Q Consensus 37 ~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~v----g~A~GlA~~G-~~p~ 111 (325)
++... +.+.|.+.+. +..+++. |.+... +.. . +.+-..+.+|+..+ -.+.+ ..|.|++++. -+++
T Consensus 356 l~~~~-~~~~l~~~l~-~~~iiv~--d~G~~~--~~~-~-~~~~~~~~~~~~~~--~~g~mG~glpaaiGa~la~p~~~v 425 (539)
T TIGR03393 356 LSQEN-FWQTLQTFLR-PGDIILA--DQGTSA--FGA-A-DLRLPADVNFIVQP--LWGSIGYTLPAAFGAQTACPNRRV 425 (539)
T ss_pred cCHHH-HHHHHHHhcC-CCCEEEE--ccCchh--hhh-h-hccCCCCCeEEech--hhhhhhhHHHHHHHHHhcCCCCCe
Confidence 44433 5556666654 3345544 444321 211 1 22222255777644 23444 3566666653 3566
Q ss_pred EecccccH-HHHHHHHHHHHHhhccccCCCCccCCEEEEe--CCCCCC-----CCCCC----cchHHHHHHhcC--C-Cc
Q 020510 112 VEFMTFNF-SMQAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGAAA-----GVGAQ----HSHCYAAWYASV--P-GL 176 (325)
Q Consensus 112 v~~~~~~f-~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~--~~G~~~-----g~G~t----Hs~~~~a~~~~i--P-~~ 176 (325)
+++. .+. .+.....|-. +.. .++|++++. .++... +.+.. +...+..+.+.+ + ++
T Consensus 426 v~i~-GDG~f~m~~~EL~T-a~~--------~~lpi~~vV~NN~~y~~i~~~~~~~~~~~~~~~~df~~la~a~G~~~~~ 495 (539)
T TIGR03393 426 ILLI-GDGSAQLTIQELGS-MLR--------DKQHPIILVLNNEGYTVERAIHGAEQRYNDIALWNWTHLPQALSLDPQS 495 (539)
T ss_pred EEEE-cCcHHHhHHHHHHH-HHH--------cCCCCEEEEEeCCceEEEEeecCCCCCcCcCCCCCHHHHHHHcCCCCcc
Confidence 6565 442 3344444433 443 466655543 223221 11111 111223444443 1 12
Q ss_pred EEEeeCCHHHHHHHHHHhHhCCCcEEEEe
Q 020510 177 KVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (325)
Q Consensus 177 ~V~~P~d~~e~~~~l~~a~~~~~Pv~ir~ 205 (325)
.-+.-.+..|+...++.+++.++|++|-.
T Consensus 496 ~~~~v~~~~el~~al~~a~~~~~p~liev 524 (539)
T TIGR03393 496 ECWRVSEAEQLADVLEKVAAHERLSLIEV 524 (539)
T ss_pred ceEEeccHHHHHHHHHHHhccCCeEEEEE
Confidence 46777899999999999999999999853
No 225
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=57.35 E-value=1.4e+02 Score=30.76 Aligned_cols=109 Identities=18% Similarity=0.170 Sum_probs=61.9
Q ss_pred ceeec-hh-hHHHHHHHHHHHhccC-CeeEEecccccH-HHHHHHHHHHHHhhccccCCCCccCCEEEEeC-CCCCC-C-
Q 020510 85 RVLDT-PI-TEAGFTGIGVGAAYYG-LKPVVEFMTFNF-SMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAA-G- 157 (325)
Q Consensus 85 R~i~~-GI-aE~~~vg~A~GlA~~G-~~p~v~~~~~~f-~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G~~~-g- 157 (325)
+|+.. |. +=-..++.|.|++++. -++++++. .+. .+.....+-. +.. .++|++++.- ++.++ .
T Consensus 429 ~~~~~~g~gsmG~~l~~aiGa~la~~~~~vv~i~-GDGsf~~~~~el~t-a~~--------~~l~~~~vv~NN~~~g~~~ 498 (578)
T PRK06112 429 RFLTPRGLAGLGWGVPMAIGAKVARPGAPVICLV-GDGGFAHVWAELET-ARR--------MGVPVTIVVLNNGILGFQK 498 (578)
T ss_pred eEECCCCccccccHHHHHHHHHhhCCCCcEEEEE-cchHHHhHHHHHHH-HHH--------hCCCeEEEEEeCCccCCEE
Confidence 57653 21 1234667888887764 45666554 442 2223333433 443 4677666543 23211 0
Q ss_pred ------CCCCc------chHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510 158 ------VGAQH------SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 158 ------~G~tH------s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir 204 (325)
.+..+ ...+..+.+++ |+..+.-.+..|+...++.+++.++|++|-
T Consensus 499 ~~~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lIe 556 (578)
T PRK06112 499 HAETVKFGTHTDACHFAAVDHAAIARAC-GCDGVRVEDPAELAQALAAAMAAPGPTLIE 556 (578)
T ss_pred eccccccCCccccCcCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 11111 11223566665 667777889999999999999988999885
No 226
>cd06063 H2MP_Cyano-H2up This group of endopeptidases include HupW enzymes that are specific to the cyanobacterial hydrogenase and are involved in the C-terminal cleavage of the hydrogenase large subunit precursor protein. Cyanobacterial nickel-iron (NiFe)-hydrogenases are found exclusively in the N2-fixing strains and are encoded by hup (hydrogen uptake) genes. These uptake hydrogenases are heterodimers with a large (hupL) and small subunit (hupS) and catalyze the consumption of the H2 produced during N2 fixation. Sequence similarity shows that the putative metal-binding resides are well conserved in this group of hydrogen maturation proteases. This group also includes such proteins as the hydrogenase III from Aquifex aeolicus.
Probab=57.21 E-value=37 Score=28.21 Aligned_cols=55 Identities=11% Similarity=0.158 Sum_probs=37.6
Q ss_pred EEEEEechhH----HHHHHHHHHHHhcC--CcEEEEEeeeccCCCHHHHHHHHhCCCeEEEEecC
Q 020510 241 VTITAFSKIV----GLSLKAAEILAKEG--ISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEG 299 (325)
Q Consensus 241 v~Iia~G~~~----~~a~~Aa~~L~~~G--i~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe~ 299 (325)
++|+++|+.+ .....+++.|++.. -+++++|..+.- .+.+ ..+.++++++++|=-
T Consensus 1 ~lVlGiGN~L~~DDG~G~~v~~~L~~~~~~~~v~~id~gt~~---~~l~-~~l~~~d~vIiVDA~ 61 (146)
T cd06063 1 LTIIGCGNLNRGDDGVGPILIRRLQAYLLPPHVRLVDCGTAG---MEVM-FRARGAKQLIIIDAS 61 (146)
T ss_pred CEEEEECCcccccCcHHHHHHHHHhhcCCCCCeEEEECCCCH---HHHH-HHhcCCCEEEEEEeC
Confidence 3677888766 25667788887653 358899998872 3433 346678888888764
No 227
>cd06062 H2MP_MemB-H2up Endopeptidases belonging to membrane-bound hydrogenases group. These hydrogenases transfer electrons from H2 to a cytochrome that is bound to a membrane-located complex coupling electron transfer to transmembrane proton translocation. Endopeptidase HybD from E. coli is well studied in this group. Maturation of [NiFe] hydrogenases include proteolytic processing of large subunit, assembly with other subunits, and formation of the nickel metallocenter. Hydrogenase maturation endopeptidase (HybD) cleaves a short C-terminal peptide after a His or an Arg residue in the large subunit (pre-HybC) of hydrogenase 2 (hyb operon) in E. coli. This cleavage is nickel dependent. A variety of endopeptidases belong to this group that are similar in function and sequence homology. They include such proteins as HynC, HoxM, and HupD.
Probab=57.17 E-value=42 Score=27.88 Aligned_cols=54 Identities=19% Similarity=0.390 Sum_probs=37.6
Q ss_pred EEEEEechhH----HHHHHHHHHHHhc---CCcEEEEEeeeccCCCHHHHHHHHhCCCeEEEEec
Q 020510 241 VTITAFSKIV----GLSLKAAEILAKE---GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEE 298 (325)
Q Consensus 241 v~Iia~G~~~----~~a~~Aa~~L~~~---Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe 298 (325)
++|+++|+.+ .....+++.|++. .-++++++..+.- .+.+ ..+.+++++++||=
T Consensus 1 ilV~GiGN~l~gDDG~G~~va~~L~~~~~~~~~v~vi~~~~~~---~~l~-~~l~~~d~viiVDA 61 (146)
T cd06062 1 ILVLGIGNILLADEGIGVHAVERLEENYSFPENVELIDGGTLG---LELL-PYIEEADRLIIVDA 61 (146)
T ss_pred CEEEEECccccccCcHHHHHHHHHHHhcCCCCCeEEEECCCCH---HHHH-HHHhcCCEEEEEEc
Confidence 3577888776 2566777888765 3468899998862 3333 45667888888876
No 228
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=56.39 E-value=69 Score=22.64 Aligned_cols=69 Identities=20% Similarity=0.158 Sum_probs=42.1
Q ss_pred cEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhC-CCeEEEEecCCCCCCHHHHHHHHH
Q 020510 240 DVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRK-TNRLVTVEEGFPQHGVGAEIWCAF 313 (325)
Q Consensus 240 dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~-~~~vvvvEe~~~~GGlg~~v~~~l 313 (325)
+++|.+ -+....+.+|.+.|++.|++.+.+|+..- + +.+.+.+.-.. +-..+++++. ..||. .+|.++|
T Consensus 2 ~v~lys-~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~-~-~~~~~~~~~g~~~vP~ifi~g~-~igg~-~~l~~~l 71 (72)
T cd03029 2 SVSLFT-KPGCPFCARAKAALQENGISYEEIPLGKD-I-TGRSLRAVTGAMTVPQVFIDGE-LIGGS-DDLEKYF 71 (72)
T ss_pred eEEEEE-CCCCHHHHHHHHHHHHcCCCcEEEECCCC-h-hHHHHHHHhCCCCcCeEEECCE-EEeCH-HHHHHHh
Confidence 344544 46677888888999999999999988642 2 33334332222 1235666655 46885 5555554
No 229
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=56.38 E-value=53 Score=24.20 Aligned_cols=58 Identities=21% Similarity=0.194 Sum_probs=37.1
Q ss_pred cEEEEEech----hHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHh-CCCeEEEEecCC
Q 020510 240 DVTITAFSK----IVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVR-KTNRLVTVEEGF 300 (325)
Q Consensus 240 dv~Iia~G~----~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~-~~~~vvvvEe~~ 300 (325)
++.|+..+. ....+++.++.|+.+|+.+.+-+ .. +.+... +..+-+ +...++++.+..
T Consensus 3 ~v~ii~~~~~~~~~~~~a~~~~~~Lr~~g~~v~~~~-~~-~~~~k~-~~~a~~~g~~~~iiig~~e 65 (94)
T cd00738 3 DVAIVPLTDPRVEAREYAQKLLNALLANGIRVLYDD-RE-RKIGKK-FREADLRGVPFAVVVGEDE 65 (94)
T ss_pred EEEEEECCCCcHHHHHHHHHHHHHHHHCCCEEEecC-CC-cCHhHH-HHHHHhCCCCEEEEECCCh
Confidence 567777664 55788999999999999888733 22 344443 343332 335677777543
No 230
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=56.28 E-value=44 Score=24.66 Aligned_cols=70 Identities=14% Similarity=0.193 Sum_probs=41.3
Q ss_pred EEEEEechhHHHHHHHHHHHHh-----cCCcEEEEEeeeccCCCHHHHHHHHhC---CCeEEEEecCCCCCCHHHHHHHH
Q 020510 241 VTITAFSKIVGLSLKAAEILAK-----EGISAEVINLRSIRPLDRSTINASVRK---TNRLVTVEEGFPQHGVGAEIWCA 312 (325)
Q Consensus 241 v~Iia~G~~~~~a~~Aa~~L~~-----~Gi~~~Vi~~~~l~P~d~~~l~~~~~~---~~~vvvvEe~~~~GGlg~~v~~~ 312 (325)
++|.+ -+....+.+|.+.|++ .|+....+|+.. .+...+.+.+.... +-..|+++. ...||+. +|.++
T Consensus 3 v~iy~-~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~-~~~~~~el~~~~~~~~~~vP~ifi~g-~~igg~~-~~~~~ 78 (85)
T PRK11200 3 VVIFG-RPGCPYCVRAKELAEKLSEERDDFDYRYVDIHA-EGISKADLEKTVGKPVETVPQIFVDQ-KHIGGCT-DFEAY 78 (85)
T ss_pred EEEEe-CCCChhHHHHHHHHHhhcccccCCcEEEEECCC-ChHHHHHHHHHHCCCCCcCCEEEECC-EEEcCHH-HHHHH
Confidence 34443 3445566677777776 799999999985 33334556555442 223466655 4478884 44445
Q ss_pred Hc
Q 020510 313 FF 314 (325)
Q Consensus 313 l~ 314 (325)
+.
T Consensus 79 ~~ 80 (85)
T PRK11200 79 VK 80 (85)
T ss_pred HH
Confidence 44
No 231
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=55.90 E-value=1.5e+02 Score=30.43 Aligned_cols=109 Identities=24% Similarity=0.256 Sum_probs=61.5
Q ss_pred CCceeechhhHHHHH----HHHHHHhccC-CeeEEecccccH-HHHHHHHHHHHHhhccccCCCCccCCEEEEeC-C-CC
Q 020510 83 PERVLDTPITEAGFT----GIGVGAAYYG-LKPVVEFMTFNF-SMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N-GA 154 (325)
Q Consensus 83 p~R~i~~GIaE~~~v----g~A~GlA~~G-~~p~v~~~~~~f-~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~-G~ 154 (325)
|.+|+..+ -.+.+ +.|.|++++. -++++++. .+. .+.....+-. +.. .++|++++.. + +.
T Consensus 420 p~~~~~~~--~~g~mG~~lpaaiGa~la~p~~~Vv~i~-GDG~f~m~~~eL~T-avr--------~~lpvi~vV~NN~~y 487 (579)
T TIGR03457 420 PRKFLAPM--SFGNCGYAFPTIIGAKIAAPDRPVVAYA-GDGAWGMSMNEIMT-AVR--------HDIPVTAVVFRNRQW 487 (579)
T ss_pred CCeEEcCC--ccccccchHHHHHhhhhhCCCCcEEEEE-cchHHhccHHHHHH-HHH--------hCCCeEEEEEECcch
Confidence 78898643 23344 4677777764 35666555 442 2222233322 332 4777665532 2 22
Q ss_pred CC---------C---CCCC-cch-HHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHh---CCCcEEEE
Q 020510 155 AA---------G---VGAQ-HSH-CYAAWYASVPGLKVLSPYSSEDARGLLKAAIR---DPDPVVFL 204 (325)
Q Consensus 155 ~~---------g---~G~t-Hs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~---~~~Pv~ir 204 (325)
.. + .+.. +.. .+..+...+ |..-+.-.+++|+...++.+++ .++|++|-
T Consensus 488 g~i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~g~~v~~~~el~~al~~a~~~~~~~~p~lie 553 (579)
T TIGR03457 488 GAEKKNQVDFYNNRFVGTELESELSFAGIADAM-GAKGVVVDKPEDVGPALKKAIAAQAEGKTTVIE 553 (579)
T ss_pred HHHHHHHHHhhCCcceeccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhhCCCCCcEEEE
Confidence 20 0 0111 111 223555555 6777788999999999999987 46798884
No 232
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=55.88 E-value=62 Score=24.00 Aligned_cols=58 Identities=16% Similarity=0.075 Sum_probs=37.1
Q ss_pred cEEEEEech----hHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHH-hCCCeEEEEecCC
Q 020510 240 DVTITAFSK----IVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASV-RKTNRLVTVEEGF 300 (325)
Q Consensus 240 dv~Iia~G~----~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~-~~~~~vvvvEe~~ 300 (325)
.++|+..+. ....+.+.++.|++.|+++.+ |.+. +.+... +..+- .+...++++-+..
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~-d~~~-~~l~k~-i~~a~~~g~~~~iiiG~~e 65 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLL-DDRN-ERPGVK-FADADLIGIPYRIVVGKKS 65 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEE-ECCC-CCcccc-hhHHHhcCCCEEEEECCch
Confidence 466776664 457889999999999999987 4442 344433 33332 2445677776544
No 233
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=55.71 E-value=65 Score=29.01 Aligned_cols=63 Identities=13% Similarity=0.043 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeeeccCCCH--------HHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHH
Q 020510 250 VGLSLKAAEILAKEGISAEVINLRSIRPLDR--------STINASVRKTNRLVTVEEGFPQHGVGAEIWCAF 313 (325)
Q Consensus 250 ~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~--------~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l 313 (325)
...+..+++.+.++|.+++++|+..+-.++. ..+.+.++..+.+|++--.+ ++++...+..+|
T Consensus 43 ~~la~~~~~~~~~~g~~v~~idl~~lPl~~~d~~~~p~v~~l~~~v~~ADgvii~TPEY-n~sipg~LKNai 113 (219)
T TIGR02690 43 RLLAEEAARLLGCEGRETRIFDPPGLPLPDAAHADHPKVRELRQLSEWSEGQVWCSPER-HGAITGSQKDQI 113 (219)
T ss_pred HHHHHHHHHHHhhcCCEEEEeCcccCCCCCcCcccCHHHHHHHHHHHhCCEEEEeCCcc-ccCcCHHHHHHH
Confidence 3455556666776799999999876522221 33677777777766554444 678777766554
No 234
>PRK12559 transcriptional regulator Spx; Provisional
Probab=54.67 E-value=40 Score=27.65 Aligned_cols=42 Identities=19% Similarity=0.155 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCC
Q 020510 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKT 290 (325)
Q Consensus 248 ~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~ 290 (325)
.....+.+|.+.|++.|++.+.+|+.. .|++.+.|.+.++.+
T Consensus 8 ~~C~~crkA~~~L~~~gi~~~~~di~~-~~~s~~el~~~l~~~ 49 (131)
T PRK12559 8 ASCASCRKAKAWLEENQIDYTEKNIVS-NSMTVDELKSILRLT 49 (131)
T ss_pred CCChHHHHHHHHHHHcCCCeEEEEeeC-CcCCHHHHHHHHHHc
Confidence 455678888899999999999999975 789999888888764
No 235
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=54.59 E-value=1.6e+02 Score=30.51 Aligned_cols=37 Identities=24% Similarity=0.277 Sum_probs=31.6
Q ss_pred HHHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510 167 AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 167 ~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir 204 (325)
.++..++ |+.-+.-.+.+|+...++.+++.++|++|-
T Consensus 506 ~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lIe 542 (597)
T PRK08273 506 ARFAELL-GLKGIRVDDPEQLGAAWDEALAADRPVVLE 542 (597)
T ss_pred HHHHHHC-CCEEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 4566666 788889999999999999999989999984
No 236
>PRK08611 pyruvate oxidase; Provisional
Probab=54.51 E-value=1.2e+02 Score=31.17 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=30.9
Q ss_pred HHHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510 167 AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 167 ~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir 204 (325)
.++.+++ |..-+...+++|+...++++++.++|++|.
T Consensus 490 ~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lIe 526 (576)
T PRK08611 490 AKFAEAC-GGKGYRVEKAEELDPAFEEALAQDKPVIID 526 (576)
T ss_pred HHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 3555555 677788899999999999999999999985
No 237
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=54.28 E-value=35 Score=26.44 Aligned_cols=43 Identities=23% Similarity=0.264 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCC
Q 020510 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN 291 (325)
Q Consensus 248 ~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~ 291 (325)
.....+.+|.+.|+++|++.+.+|+.. .|.+.+.|.+.+.+.+
T Consensus 7 ~~C~~c~ka~~~L~~~~i~~~~idi~~-~~~~~~~l~~~~~~~~ 49 (105)
T cd02977 7 PNCSTSRKALAWLEEHGIEYEFIDYLK-EPPTKEELKELLAKLG 49 (105)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEeecc-CCCCHHHHHHHHHhcC
Confidence 455678889999999999999999885 6888888888777654
No 238
>PRK10264 hydrogenase 1 maturation protease; Provisional
Probab=54.09 E-value=42 Score=29.61 Aligned_cols=56 Identities=14% Similarity=0.253 Sum_probs=41.2
Q ss_pred CcEEEEEechhH----HHHHHHHHHHHhc---CCcEEEEEeeeccCCCHHHHHHHHhCCCeEEEEec
Q 020510 239 KDVTITAFSKIV----GLSLKAAEILAKE---GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEE 298 (325)
Q Consensus 239 ~dv~Iia~G~~~----~~a~~Aa~~L~~~---Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe 298 (325)
.+++|+++|+.+ .....+++.|++. .-+++++|..+.- .+. ...+.+.++++++|=
T Consensus 4 ~rilVlGiGN~L~gDDGvG~~va~~L~~~~~~~~~V~vid~Gt~g---~~l-l~~i~~~d~vIiVDA 66 (195)
T PRK10264 4 QRVVVMGLGNLLWADEGFGVRVAERLYAHYHWPEYVEIVDGGTQG---LNL-LGYVESASHLLILDA 66 (195)
T ss_pred CCEEEEEeCccccccCcHHHHHHHHHHhhcCCCCCeEEEECCCCH---HHH-HHHHcCCCEEEEEEC
Confidence 368899999887 3677888888764 2358999999873 243 356778888888875
No 239
>PLN02409 serine--glyoxylate aminotransaminase
Probab=53.84 E-value=76 Score=30.86 Aligned_cols=68 Identities=10% Similarity=0.093 Sum_probs=35.9
Q ss_pred eeeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhC-----CCeEEEEecCCCCCCH
Q 020510 235 EREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRK-----TNRLVTVEEGFPQHGV 305 (325)
Q Consensus 235 l~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~-----~~~vvvvEe~~~~GGl 305 (325)
+++|.++++...|...... .+.++..|.++..+....=..+|.+.|.+.++. ++.|++.-.++.+|-+
T Consensus 81 ~~~Gd~Vlv~~~~~~~~~~---~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~ 153 (401)
T PLN02409 81 LSPGDKVVSFRIGQFSLLW---IDQMQRLNFDVDVVESPWGQGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVT 153 (401)
T ss_pred CCCCCEEEEeCCCchhHHH---HHHHHHcCCceEEEECCCCCCCCHHHHHHHHhhCcCCCccEEEEEeeccccccc
Confidence 3456666666666654332 233344577777776543234667777776653 3334444334445544
No 240
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=53.31 E-value=1.1e+02 Score=26.39 Aligned_cols=17 Identities=29% Similarity=0.515 Sum_probs=7.9
Q ss_pred hhHHHHhCCCceeechhh
Q 020510 75 KGLLEKYGPERVLDTPIT 92 (325)
Q Consensus 75 ~~~~~~~gp~R~i~~GIa 92 (325)
..|++.+ ++-|+..++.
T Consensus 19 ~~Lq~~~-~~p~~~l~~D 35 (174)
T PF07931_consen 19 RALQERL-PEPWLHLSVD 35 (174)
T ss_dssp HHHHHHS-SS-EEEEEHH
T ss_pred HHHHHhC-cCCeEEEecC
Confidence 4444455 4555555544
No 241
>PRK10466 hybD hydrogenase 2 maturation endopeptidase; Provisional
Probab=52.96 E-value=66 Score=27.30 Aligned_cols=56 Identities=9% Similarity=0.136 Sum_probs=40.4
Q ss_pred cEEEEEechhHH----HHHHHHHHHHhc-C--CcEEEEEeeeccCCCHHHHHHHHhCCCeEEEEecC
Q 020510 240 DVTITAFSKIVG----LSLKAAEILAKE-G--ISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEG 299 (325)
Q Consensus 240 dv~Iia~G~~~~----~a~~Aa~~L~~~-G--i~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe~ 299 (325)
+++|+++|+.+. ....+++.|++. . -+++++|..+.- .+. ...+..++++|+||=-
T Consensus 2 ~ilVlGiGN~l~gDDGvG~~va~~L~~~~~~~~~v~vid~gt~~---~~l-l~~l~~~d~vIiVDA~ 64 (164)
T PRK10466 2 RILVLGVGNILLTDEAIGVRIVEALEQRYILPDYVEILDGGTAG---MEL-LGDMANRDHLIIADAI 64 (164)
T ss_pred ceEEEEECchhhccCcHHHHHHHHHHHhcCCCCCeEEEeccccH---HHH-HHHHhCCCEEEEEEec
Confidence 478899998873 577888888764 3 368999999873 343 3456678888888764
No 242
>PRK07586 hypothetical protein; Validated
Probab=52.91 E-value=2.5e+02 Score=28.26 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=29.2
Q ss_pred HHHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510 167 AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 167 ~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir 204 (325)
..+.+++ |..-+.-.++.|+...++++++.++|.+|-
T Consensus 475 ~~lA~a~-G~~~~~V~~~~el~~al~~a~~~~~p~lie 511 (514)
T PRK07586 475 VALAEGM-GVPARRVTTAEEFADALAAALAEPGPHLIE 511 (514)
T ss_pred HHHHHHC-CCcEEEeCCHHHHHHHHHHHHcCCCCEEEE
Confidence 3555555 566667789999999999999988999873
No 243
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=52.66 E-value=1.6e+02 Score=30.19 Aligned_cols=111 Identities=15% Similarity=0.061 Sum_probs=63.1
Q ss_pred CCceeechh--hHHHHHHHHHHHhccC-CeeEEecccccH-HHHHHHHHHHHHhhccccCCCCccCCEEEEeC-CC-CCC
Q 020510 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTFNF-SMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NG-AAA 156 (325)
Q Consensus 83 p~R~i~~GI--aE~~~vg~A~GlA~~G-~~p~v~~~~~~f-~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G-~~~ 156 (325)
|.+|+..+- +=-..++.|.|++++. -++++++. .+. .+.....|-. +.. .++|++++.- ++ ...
T Consensus 411 ~~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i~-GDG~f~m~~~EL~T-a~r--------~~lpv~~vV~NN~~y~~ 480 (572)
T PRK08979 411 PRRWINSGGLGTMGFGLPAAMGVKFAMPDETVVCVT-GDGSIQMNIQELST-ALQ--------YDIPVKIINLNNRFLGM 480 (572)
T ss_pred CCeEEccCCcccccchhhHHHhhhhhCCCCeEEEEE-cchHhhccHHHHHH-HHH--------cCCCeEEEEEeCCccHH
Confidence 678887542 2223556777777763 34555554 442 2223333433 333 4777666543 33 210
Q ss_pred --------CCCC-Cc-----chHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhC-CCcEEEE
Q 020510 157 --------GVGA-QH-----SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-PDPVVFL 204 (325)
Q Consensus 157 --------g~G~-tH-----s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-~~Pv~ir 204 (325)
..+. .+ .-.+..+.+++ |..-..-.+..|+..+++.+++. ++|++|-
T Consensus 481 i~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~eL~~al~~a~~~~~~p~lIe 542 (572)
T PRK08979 481 VKQWQDMIYQGRHSHSYMDSVPDFAKIAEAY-GHVGIRISDPDELESGLEKALAMKDRLVFVD 542 (572)
T ss_pred HHHHHHHHhCCcccccCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhcCCCcEEEE
Confidence 0010 01 01223566666 67778889999999999999985 8898874
No 244
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=52.52 E-value=63 Score=25.94 Aligned_cols=71 Identities=13% Similarity=0.075 Sum_probs=49.0
Q ss_pred EEEEEechhHHH-----HHHHHHHHHhcCCcEEEEEee-eccCCCHHHHHHHHhCCC-eEEEEecCCCCCCHHHHHHHH
Q 020510 241 VTITAFSKIVGL-----SLKAAEILAKEGISAEVINLR-SIRPLDRSTINASVRKTN-RLVTVEEGFPQHGVGAEIWCA 312 (325)
Q Consensus 241 v~Iia~G~~~~~-----a~~Aa~~L~~~Gi~~~Vi~~~-~l~P~d~~~l~~~~~~~~-~vvvvEe~~~~GGlg~~v~~~ 312 (325)
-.++++|..+.. ..+-.+.|.+.|+..=+|... .+..+|.+.+ +.+++.+ .++.+..+....-+.+.|...
T Consensus 44 Elvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~~~iP~~~i-~~A~~~~lPli~ip~~~~f~~I~~~v~~~ 121 (123)
T PF07905_consen 44 ELVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTGRYLDEIPEEII-ELADELGLPLIEIPWEVPFSDITREVMRA 121 (123)
T ss_pred eEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCccccCCHHHH-HHHHHcCCCEEEeCCCCCHHHHHHHHHHH
Confidence 345677766533 567778888889998888775 8889998876 4666665 588888877654444444443
No 245
>PRK12474 hypothetical protein; Provisional
Probab=52.45 E-value=1.4e+02 Score=30.12 Aligned_cols=36 Identities=14% Similarity=0.195 Sum_probs=29.8
Q ss_pred HHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510 168 AWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 168 a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir 204 (325)
.+.+.+ |..-..-.+++|+...++.+++.++|++|-
T Consensus 480 ~lA~a~-G~~~~rv~~~~eL~~al~~a~~~~~p~lie 515 (518)
T PRK12474 480 KIAEGL-GVEASRATTAEEFSAQYAAAMAQRGPRLIE 515 (518)
T ss_pred HHHHHC-CCeEEEeCCHHHHHHHHHHHHcCCCCEEEE
Confidence 555555 677788889999999999999988999873
No 246
>PRK06756 flavodoxin; Provisional
Probab=52.36 E-value=86 Score=25.70 Aligned_cols=30 Identities=13% Similarity=0.131 Sum_probs=21.2
Q ss_pred echhHHHHHHHHHHHHhcCCcEEEEEeeec
Q 020510 246 FSKIVGLSLKAAEILAKEGISAEVINLRSI 275 (325)
Q Consensus 246 ~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l 275 (325)
+|.+-..|...++.|++.|+++.++++...
T Consensus 12 tGnTe~vA~~ia~~l~~~g~~v~~~~~~~~ 41 (148)
T PRK06756 12 SGNTEEMADHIAGVIRETENEIEVIDIMDS 41 (148)
T ss_pred CchHHHHHHHHHHHHhhcCCeEEEeehhcc
Confidence 455556666667777777899988887543
No 247
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=51.83 E-value=78 Score=28.85 Aligned_cols=71 Identities=17% Similarity=0.217 Sum_probs=45.6
Q ss_pred CCceEEee-eCCcEEEEEechhHHHHHHHHHHHHhcC--CcEEEEE-eeecc-CCCHHHHHHHHhCCCeEEEEecCC
Q 020510 229 IGKAKIER-EGKDVTITAFSKIVGLSLKAAEILAKEG--ISAEVIN-LRSIR-PLDRSTINASVRKTNRLVTVEEGF 300 (325)
Q Consensus 229 ~gk~~vl~-~G~dv~Iia~G~~~~~a~~Aa~~L~~~G--i~~~Vi~-~~~l~-P~d~~~l~~~~~~~~~vvvvEe~~ 300 (325)
+|++.... .+..+++|+-|+.....+..++.+.++| .++.++- .++-+ -+..+.+.+...+ ....++++++
T Consensus 97 ~G~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~~~~~~~V~~~~G~~~~~dl~~~~el~~~~~~-~~~~~~~~~~ 172 (252)
T COG0543 97 LGNGFLREKIGKPVLLIAGGTGIAPLYAIAKELKEKGDANKVTLLYGARTAKDLLLLDELEELAEK-EVHPVTDDGW 172 (252)
T ss_pred CCCCccccccCCcEEEEecccCHhHHHHHHHHHHhcCCCceEEEEEeccChhhcccHHHHHHhhcC-cEEEEECCCC
Confidence 44443333 2345999999999999999999999888 5555554 33322 2444556655544 4567776655
No 248
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=51.50 E-value=80 Score=27.71 Aligned_cols=69 Identities=16% Similarity=0.132 Sum_probs=50.1
Q ss_pred echhHHHHHHHHHHHHhcCCcEEEEEeeec--cCC----------------C-HHHHHHHHhCCCeEEEEecCCCCCCHH
Q 020510 246 FSKIVGLSLKAAEILAKEGISAEVINLRSI--RPL----------------D-RSTINASVRKTNRLVTVEEGFPQHGVG 306 (325)
Q Consensus 246 ~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l--~P~----------------d-~~~l~~~~~~~~~vvvvEe~~~~GGlg 306 (325)
.|.+...+.++++.+++.|.++++++++-. +|- | .+.|.+.+...+.||+.-- ...|++.
T Consensus 13 ~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI~gsP-vy~g~vs 91 (207)
T COG0655 13 NGNTAKLAEAVLEGAEEAGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGIIFGSP-VYFGNVS 91 (207)
T ss_pred CCcHHHHHHHHHHHHHHcCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEEEeCC-eecCCch
Confidence 588888899999999999999999999865 222 2 2445555666666655544 4478898
Q ss_pred HHHHHHHcC
Q 020510 307 AEIWCAFFP 315 (325)
Q Consensus 307 ~~v~~~l~~ 315 (325)
+.+..++-.
T Consensus 92 a~~K~fiDR 100 (207)
T COG0655 92 AQMKAFIDR 100 (207)
T ss_pred HHHHHHHhh
Confidence 888877754
No 249
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=51.45 E-value=47 Score=33.98 Aligned_cols=36 Identities=22% Similarity=0.182 Sum_probs=28.5
Q ss_pred HHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510 168 AWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 168 a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir 204 (325)
.+...+ |..-+...+++|+...++.+++.++|++|-
T Consensus 510 ~lA~a~-G~~~~~V~~~~eL~~al~~a~~~~~p~lIe 545 (568)
T PRK07449 510 HAAAMY-GLEYHRPETWAELEEALADALPTPGLTVIE 545 (568)
T ss_pred HHHHHc-CCCccCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 344444 556677789999999999999888999985
No 250
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=51.12 E-value=34 Score=24.40 Aligned_cols=58 Identities=16% Similarity=0.172 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhC-CCeEEEEecCCCCCCHHH
Q 020510 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRK-TNRLVTVEEGFPQHGVGA 307 (325)
Q Consensus 248 ~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~-~~~vvvvEe~~~~GGlg~ 307 (325)
.....+.+|.+.|++.|++.+.+|+.. .|-..+.+.+ ... +-.++++++....+|+-.
T Consensus 7 ~~Cp~C~~ak~~L~~~~i~~~~~di~~-~~~~~~~~~~-~g~~~vP~v~~~g~~~~~G~~~ 65 (72)
T TIGR02194 7 NNCVQCKMTKKALEEHGIAFEEINIDE-QPEAIDYVKA-QGFRQVPVIVADGDLSWSGFRP 65 (72)
T ss_pred CCCHHHHHHHHHHHHCCCceEEEECCC-CHHHHHHHHH-cCCcccCEEEECCCcEEeccCH
Confidence 445677888888999999999999975 2222233322 111 223577755445677743
No 251
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=51.08 E-value=40 Score=26.75 Aligned_cols=42 Identities=24% Similarity=0.234 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCC
Q 020510 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKT 290 (325)
Q Consensus 248 ~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~ 290 (325)
.....+.+|.+.|++.|++.+++|+.. .|++.+.|.+.++..
T Consensus 8 ~~C~~c~ka~~~L~~~gi~~~~idi~~-~~~~~~el~~~~~~~ 49 (115)
T cd03032 8 PSCSSCRKAKQWLEEHQIPFEERNLFK-QPLTKEELKEILSLT 49 (115)
T ss_pred CCCHHHHHHHHHHHHCCCceEEEecCC-CcchHHHHHHHHHHh
Confidence 556778889999999999999999864 688888888888755
No 252
>cd00518 H2MP Hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). These enzymes belong to the peptidase family M52. Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE, the large subunit of hydrogenase 3. This cleavage is nickel dependent. This CD also includes such hydrogenase-processing proteins as HydD, HupW, and HoxW, as well as, proteins of the F420-reducing hydrogenase of methanogens (e.g., FrcD). Also included, is the Pyrococcus furiosus FrxA protein, a bifunctional endopeptidase/ sulfhydrogenase found in NADP-reducing hyperthermophiles.The Pyrococcus FrxA is not related to those found in Helicobacter pylori.
Probab=50.93 E-value=53 Score=26.88 Aligned_cols=54 Identities=17% Similarity=0.189 Sum_probs=37.3
Q ss_pred EEEechhH----HHHHHHHHHHHhcC--CcEEEEEeeeccCCCHHHHHHHHhCCCeEEEEecCC
Q 020510 243 ITAFSKIV----GLSLKAAEILAKEG--ISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGF 300 (325)
Q Consensus 243 Iia~G~~~----~~a~~Aa~~L~~~G--i~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe~~ 300 (325)
|+++|+.+ .....+++.|++.. -+++++|..+. + .+ +...++..+++|++|=-.
T Consensus 2 ViGiGN~l~~DDGvG~~v~~~L~~~~~~~~v~~id~gt~-~--~~-l~~~l~~~d~viiVDA~~ 61 (139)
T cd00518 2 VLGIGNPLRGDDGFGPAVAERLEERYLPPGVEVIDGGTL-G--LE-LLDLLEGADRVIIVDAVD 61 (139)
T ss_pred EEEECCcccccCcHHHHHHHHHHhcCCCCCeEEEECCCC-H--HH-HHHHHhcCCeEEEEECcc
Confidence 56777666 25667888887763 47899999987 2 33 334566788888887643
No 253
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=50.55 E-value=23 Score=30.36 Aligned_cols=43 Identities=12% Similarity=0.107 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCCeEEEEec
Q 020510 253 SLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEE 298 (325)
Q Consensus 253 a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe 298 (325)
..++++.|+++|+.+-.|-+ ...+.+.|.+.+...+.++.+.+
T Consensus 123 ~~~~a~~l~~~gv~i~~vgv---~~~~~~~L~~iA~~~~~~f~~~~ 165 (185)
T cd01474 123 PEHEAKLSRKLGAIVYCVGV---TDFLKSQLINIADSKEYVFPVTS 165 (185)
T ss_pred hHHHHHHHHHcCCEEEEEee---chhhHHHHHHHhCCCCeeEecCc
Confidence 44566778888887666655 45788888888877777764433
No 254
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=50.51 E-value=1.5e+02 Score=30.69 Aligned_cols=111 Identities=16% Similarity=0.044 Sum_probs=65.0
Q ss_pred CCceeechh-hHHH-HHHHHHHHhccC-CeeEEecccccH-HHHHHHHHHHHHhhccccCCCCccCCEEEEe--CCCCCC
Q 020510 83 PERVLDTPI-TEAG-FTGIGVGAAYYG-LKPVVEFMTFNF-SMQAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGAAA 156 (325)
Q Consensus 83 p~R~i~~GI-aE~~-~vg~A~GlA~~G-~~p~v~~~~~~f-~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~--~~G~~~ 156 (325)
|.+|++.+- .-.+ .++.|.|++++. -++++++. .+. ++.....+-. +.. .++|++++. .++...
T Consensus 437 p~~~~~~~~~G~mG~glpaaiGa~la~p~~~Vv~i~-GDG~f~m~~~eL~T-a~~--------~~lpv~ivV~NN~~~g~ 506 (612)
T PRK07789 437 PRTWLNSGGLGTMGYAVPAAMGAKVGRPDKEVWAID-GDGCFQMTNQELAT-CAI--------EGIPIKVALINNGNLGM 506 (612)
T ss_pred CCeEEcCCCcccccchhhhHHhhhccCCCCcEEEEE-cchhhhccHHHHHH-HHH--------cCCCeEEEEEECCchHH
Confidence 788987643 3333 577888888774 46666664 443 2222223322 332 466655543 222220
Q ss_pred --------CC---CCC-----cch--HHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhC-CCcEEEE
Q 020510 157 --------GV---GAQ-----HSH--CYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-PDPVVFL 204 (325)
Q Consensus 157 --------g~---G~t-----Hs~--~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-~~Pv~ir 204 (325)
.. ..+ |.. .+.++.+++ |+.-+.-.+.+|+..+++.+++. ++|++|-
T Consensus 507 i~~~q~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~V~~~~eL~~al~~a~~~~~~p~lIe 572 (612)
T PRK07789 507 VRQWQTLFYEERYSNTDLHTHSHRIPDFVKLAEAY-GCVGLRCEREEDVDAVIEKARAINDRPVVID 572 (612)
T ss_pred HHHHHHHhhCCCcceeecCcCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhcCCCcEEEE
Confidence 00 001 101 233566666 77778889999999999999985 8899985
No 255
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=50.49 E-value=30 Score=27.52 Aligned_cols=44 Identities=18% Similarity=0.142 Sum_probs=36.3
Q ss_pred chhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCC
Q 020510 247 SKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN 291 (325)
Q Consensus 247 G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~ 291 (325)
-.....+.+|.+.|++.|++.+++|+.. .|...+.|.+.++..+
T Consensus 6 ~~~C~~c~ka~~~L~~~~i~~~~idi~~-~~~~~~el~~l~~~~~ 49 (117)
T TIGR01617 6 SPNCTTCKKARRWLEANGIEYQFIDIGE-DGPTREELLDILSLLE 49 (117)
T ss_pred CCCCHHHHHHHHHHHHcCCceEEEecCC-ChhhHHHHHHHHHHcC
Confidence 4556778889999999999999999864 6888888888887665
No 256
>cd06068 H2MP_like-1 Putative [NiFe] hydrogenase-specific C-terminal protease. Sequence comparison shows similarity to hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE (the large subunit of hydrogenases 3). This cleavage is nickel dependent.
Probab=50.41 E-value=52 Score=27.22 Aligned_cols=54 Identities=13% Similarity=0.191 Sum_probs=35.4
Q ss_pred EEEechhH----HHHHHHHHHHHhcCC--cEEEEEeeeccCCCHHHHHHHHhCCCeEEEEecC
Q 020510 243 ITAFSKIV----GLSLKAAEILAKEGI--SAEVINLRSIRPLDRSTINASVRKTNRLVTVEEG 299 (325)
Q Consensus 243 Iia~G~~~----~~a~~Aa~~L~~~Gi--~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe~ 299 (325)
|+++|+.+ .....+++.|+++.. +++++|..+. ..+.+...++.+++++++|=-
T Consensus 2 ViGiGN~l~~DDGvG~~v~~~L~~~~~~~~v~~~d~g~~---~~~l~~~~~~~~d~viiVDA~ 61 (144)
T cd06068 2 VAGVGNIFLGDDGFGVEVARRLRPRQLPPGVRVADFGIR---GIHLAYELLDGYDTLILVDAV 61 (144)
T ss_pred EEEECccccccCcHHHHHHHHHhccCCCCCeEEEECCCC---HHHHHHHHHhcCCEEEEEEec
Confidence 56666655 256677788876643 4888888875 234333456677888888764
No 257
>cd06070 H2MP_like-2 Putative [NiFe] hydrogenase-specific C-terminal protease. Sequence comparison shows similarity to hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE (the large subunit of hydrogenases 3). This cleavage is nickel dependent.
Probab=50.30 E-value=49 Score=27.26 Aligned_cols=52 Identities=13% Similarity=0.097 Sum_probs=35.7
Q ss_pred EEEechhH----HHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCCeEEEEecCC
Q 020510 243 ITAFSKIV----GLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGF 300 (325)
Q Consensus 243 Iia~G~~~----~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe~~ 300 (325)
|+++|+.+ .....+++.|++. ++++++..+. ..+. ...+.++++++++|=-.
T Consensus 2 VlGiGN~l~~DDg~G~~v~~~L~~~--~v~vi~~g~~---~~~l-l~~i~~~d~viiVDA~~ 57 (140)
T cd06070 2 IIGVGNRLYGDDGFGSCLAEALEQC--GAPVFDGGLD---GFGL-LSHLENYDIVIFIDVAV 57 (140)
T ss_pred EEEECchhcccCcHHHHHHHHHhhC--CCEEEECCCc---HHHH-HHHHcCCCEEEEEEeec
Confidence 66777666 3567778888763 6789998884 2333 34566888888887643
No 258
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=50.11 E-value=54 Score=23.13 Aligned_cols=67 Identities=18% Similarity=0.157 Sum_probs=40.2
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhC--CCeEEEEecCCCCCCHHHHHH
Q 020510 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRK--TNRLVTVEEGFPQHGVGAEIW 310 (325)
Q Consensus 241 v~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~--~~~vvvvEe~~~~GGlg~~v~ 310 (325)
++|.+ -+....+.+|.+.|++.|++.+.+|+..- |-..+.+.+.... +-..|+++.. ..||+.+...
T Consensus 2 i~ly~-~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~-~~~~~~~~~~~~~~~~vP~v~i~g~-~igg~~~~~~ 70 (75)
T cd03418 2 VEIYT-KPNCPYCVRAKALLDKKGVDYEEIDVDGD-PALREEMINRSGGRRTVPQIFIGDV-HIGGCDDLYA 70 (75)
T ss_pred EEEEe-CCCChHHHHHHHHHHHCCCcEEEEECCCC-HHHHHHHHHHhCCCCccCEEEECCE-EEeChHHHHH
Confidence 34443 35567888899999999999999998753 1111222222221 2235667665 4688765443
No 259
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=50.08 E-value=1.4e+02 Score=30.71 Aligned_cols=111 Identities=18% Similarity=0.136 Sum_probs=62.8
Q ss_pred CCceeechh-hH-HHHHHHHHHHhccC-CeeEEecccccH-HHHHHHHHHHHHhhccccCCCCccCCEEEEeC-CC-CCC
Q 020510 83 PERVLDTPI-TE-AGFTGIGVGAAYYG-LKPVVEFMTFNF-SMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NG-AAA 156 (325)
Q Consensus 83 p~R~i~~GI-aE-~~~vg~A~GlA~~G-~~p~v~~~~~~f-~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G-~~~ 156 (325)
|.+|+..+- .= -..++.|.|++++- -++++++. .+. .+.....+- .+.. .++|++++.- ++ ...
T Consensus 420 ~~~~~~~~~~g~mG~glpaaiGaala~p~~~vv~i~-GDG~f~m~~~eL~-Ta~~--------~~l~~~~vV~NN~~y~~ 489 (585)
T CHL00099 420 PRKWLSSAGLGTMGYGLPAAIGAQIAHPNELVICIS-GDASFQMNLQELG-TIAQ--------YNLPIKIIIINNKWQGM 489 (585)
T ss_pred CCcEEcCccccchhhhHHHHHHHHHhCCCCeEEEEE-cchhhhhhHHHHH-HHHH--------hCCCeEEEEEECCcchH
Confidence 778886421 11 12456777777662 34555554 442 222233332 2343 4677666543 23 110
Q ss_pred ---------C---CCC--C-cchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510 157 ---------G---VGA--Q-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 157 ---------g---~G~--t-Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir 204 (325)
+ .+. . |.-.+..+.+.+ |+.-..-.+++|+...++.+++.++|.+|-
T Consensus 490 i~~~q~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 551 (585)
T CHL00099 490 VRQWQQAFYGERYSHSNMEEGAPDFVKLAEAY-GIKGLRIKSRKDLKSSLKEALDYDGPVLID 551 (585)
T ss_pred HHHHHHHhcCCCcccccCCCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 000 0 111234566666 777778899999999999999988999885
No 260
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=49.86 E-value=37 Score=26.82 Aligned_cols=43 Identities=16% Similarity=0.278 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCC
Q 020510 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN 291 (325)
Q Consensus 248 ~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~ 291 (325)
.....+.+|.+.|+++|++.+.+|+.. .|.+.+.|.+.+++++
T Consensus 7 ~~C~~c~ka~~~L~~~~i~~~~idi~~-~~~~~~el~~~~~~~~ 49 (111)
T cd03036 7 PKCSTCRKAKKWLDEHGVDYTAIDIVE-EPPSKEELKKWLEKSG 49 (111)
T ss_pred CCCHHHHHHHHHHHHcCCceEEecccC-CcccHHHHHHHHHHcC
Confidence 445678888899999999999999886 6888887877766543
No 261
>PRK07064 hypothetical protein; Provisional
Probab=49.80 E-value=1e+02 Score=31.32 Aligned_cols=37 Identities=30% Similarity=0.368 Sum_probs=30.6
Q ss_pred HHHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510 167 AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 167 ~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir 204 (325)
..+.+.+ |+.-....+++|+...++.+++.++|.+|-
T Consensus 488 ~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lIe 524 (544)
T PRK07064 488 ALLAASL-GLPHWRVTSADDFEAVLREALAKEGPVLVE 524 (544)
T ss_pred HHHHHHC-CCeEEEeCCHHHHHHHHHHHHcCCCCEEEE
Confidence 3555555 677788899999999999999988999885
No 262
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=49.58 E-value=83 Score=32.39 Aligned_cols=110 Identities=18% Similarity=0.135 Sum_probs=60.9
Q ss_pred CCceeechh--hHHHHHHHHHHHhccC-CeeEEeccccc--HHHHHHHHHHHHHhhccccCCCCccCCEEEEeC-CCCCC
Q 020510 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTFN--FSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAA 156 (325)
Q Consensus 83 p~R~i~~GI--aE~~~vg~A~GlA~~G-~~p~v~~~~~~--f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G~~~ 156 (325)
|.+|+..+- +=-..+..|.|++++. -++++++. .+ |.+.+ ..+-+ +.. .++|++++.- ++.++
T Consensus 412 p~~~~~~~~~gsmG~~lp~aiGa~lA~p~~~vv~i~-GDG~f~~~~-~el~T-a~~--------~~lpi~~vV~NN~~~~ 480 (570)
T PRK06725 412 PRTFLTSGGLGTMGFGFPAAIGAQLAKEEELVICIA-GDASFQMNI-QELQT-IAE--------NNIPVKVFIINNKFLG 480 (570)
T ss_pred CCeEEccCCcccccchhhHHHhhHhhcCCCeEEEEE-ecchhhccH-HHHHH-HHH--------hCCCeEEEEEECCccH
Confidence 678886421 1123456667776663 25555554 43 33333 33433 332 4777666543 23221
Q ss_pred C--------C-----CCCcch-HHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510 157 G--------V-----GAQHSH-CYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 157 g--------~-----G~tHs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir 204 (325)
- . +..... .+..+.+++ |+.-..-.++.|+..+++.+.+.++|.+|-
T Consensus 481 ~~~~~q~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~l~~al~~a~~~~~p~lie 541 (570)
T PRK06725 481 MVRQWQEMFYENRLSESKIGSPDFVKVAEAY-GVKGLRATNSTEAKQVMLEAFAHEGPVVVD 541 (570)
T ss_pred HHHHHHHHhcCCccccCcCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 0 011101 123455555 555566689999999999999989999885
No 263
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=49.51 E-value=1.3e+02 Score=30.86 Aligned_cols=111 Identities=15% Similarity=0.143 Sum_probs=63.5
Q ss_pred CCceeech-hh-HHHHHHHHHHHhccC-CeeEEecccccH-HHHHHHHHHHHHhhccccCCCCccCCEEEEe--CCCCCC
Q 020510 83 PERVLDTP-IT-EAGFTGIGVGAAYYG-LKPVVEFMTFNF-SMQAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGAAA 156 (325)
Q Consensus 83 p~R~i~~G-Ia-E~~~vg~A~GlA~~G-~~p~v~~~~~~f-~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~--~~G~~~ 156 (325)
|.+|+..+ .. =-..++.|.|++++. -++++++. .+. .+.....+-. +.. .++|++++. .++...
T Consensus 398 ~~~~~~~~~~G~mG~~lpaAiGa~la~p~r~vv~i~-GDGsf~m~~~eL~T-a~~--------~~lpv~ivV~NN~~~g~ 467 (574)
T PRK09124 398 KRRLLGSFNHGSMANAMPQALGAQAAHPGRQVVALS-GDGGFSMLMGDFLS-LVQ--------LKLPVKIVVFNNSVLGF 467 (574)
T ss_pred CCeEEecCCcccccchHHHHHHHHHhCCCCeEEEEe-cCcHHhccHHHHHH-HHH--------hCCCeEEEEEeCCcccc
Confidence 67888542 11 112567788888663 45666665 443 3333333433 332 367765543 222211
Q ss_pred ------CCC-----CC-cchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510 157 ------GVG-----AQ-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 157 ------g~G-----~t-Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir 204 (325)
..+ .. +.-++..+..++ |+.-+...+++|+...++++++.++|++|-
T Consensus 468 i~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lIe 526 (574)
T PRK09124 468 VAMEMKAGGYLTDGTDLHNPDFAAIAEAC-GITGIRVEKASELDGALQRAFAHDGPALVD 526 (574)
T ss_pred HHHHHHhcCCccccCcCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 011 10 111223455555 777888899999999999999988999985
No 264
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=48.31 E-value=34 Score=27.74 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=31.2
Q ss_pred echhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCCeEEEEe
Q 020510 246 FSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVE 297 (325)
Q Consensus 246 ~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvE 297 (325)
+|+.-..|.+.++.|+++|+++.++++... +.. +. .+.....++++=
T Consensus 7 tG~te~~A~~ia~~l~~~g~~~~~~~~~~~---~~~-~~-~~~~~~~~i~~~ 53 (143)
T PF00258_consen 7 TGNTEKMAEAIAEGLRERGVEVRVVDLDDF---DDS-PS-DLSEYDLLIFGV 53 (143)
T ss_dssp SSHHHHHHHHHHHHHHHTTSEEEEEEGGGS---CHH-HH-HHCTTSEEEEEE
T ss_pred chhHHHHHHHHHHHHHHcCCceeeechhhh---hhh-hh-hhhhhceeeEee
Confidence 456666777777888888999999888776 433 33 344555554443
No 265
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=47.86 E-value=54 Score=27.38 Aligned_cols=55 Identities=16% Similarity=0.213 Sum_probs=36.0
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCC--eEEEEec
Q 020510 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN--RLVTVEE 298 (325)
Q Consensus 241 v~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~--~vvvvEe 298 (325)
++|++=|..-..+.++++.|++.|+.+-+|-+.. .+.+.|.+++.+.. .++.+.|
T Consensus 107 iillTDG~~~~~~~~~a~~lk~~gi~i~~ig~g~---~~~~~L~~ia~~~~~~~~~~~~d 163 (164)
T cd01482 107 VILITDGKSQDDVELPARVLRNLGVNVFAVGVKD---ADESELKMIASKPSETHVFNVAD 163 (164)
T ss_pred EEEEcCCCCCchHHHHHHHHHHCCCEEEEEecCc---CCHHHHHHHhCCCchheEEEcCC
Confidence 3444445443455678899999898877776654 46788888777653 4555543
No 266
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=47.67 E-value=13 Score=29.54 Aligned_cols=38 Identities=29% Similarity=0.295 Sum_probs=25.8
Q ss_pred eCCcEEEEEechhHH-HHHHHHHHHHhcCCcEEEEEeee
Q 020510 237 EGKDVTITAFSKIVG-LSLKAAEILAKEGISAEVINLRS 274 (325)
Q Consensus 237 ~G~dv~Iia~G~~~~-~a~~Aa~~L~~~Gi~~~Vi~~~~ 274 (325)
+..|++||++|.... .-.+..+.|++.||.+++.|-..
T Consensus 52 p~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve~m~T~~ 90 (110)
T PF04430_consen 52 PKPEVLIIGTGKRQLFLPPELREYLRKKGIGVEVMDTPA 90 (110)
T ss_dssp CS-SEEEEEETTS-SECTHHHHHHHHTTT-EEEEE-HHH
T ss_pred CCCcEEEEccCCccccCCHHHHHHHHHcCCeEEEECHHH
Confidence 467999999996643 34566678888999999987543
No 267
>TIGR00072 hydrog_prot hydrogenase maturation protease. HycI and HoxM are well-characterized as responsible for C-terminal protease activity on their respective hydrogenase large chains. A large number of homologous proteins appear responsible for the maturation of various forms of hydrogenase.
Probab=47.51 E-value=71 Score=26.41 Aligned_cols=53 Identities=17% Similarity=0.310 Sum_probs=36.2
Q ss_pred EEEechhH----HHHHHHHHHHHhcC---CcEEEEEeeeccCCCHHHHHHHHhCCCeEEEEecC
Q 020510 243 ITAFSKIV----GLSLKAAEILAKEG---ISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEG 299 (325)
Q Consensus 243 Iia~G~~~----~~a~~Aa~~L~~~G---i~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe~ 299 (325)
|+++|+.+ .....+++.|++.. -+++++|..+.- .+ +...++++++++++|=-
T Consensus 2 ViGiGN~l~~DDg~G~~v~~~L~~~~~~~~~v~~id~g~~~---~~-l~~~l~~~d~viiVDA~ 61 (145)
T TIGR00072 2 VLGIGNILRGDDGFGPRVAERLEERYEFPPGVEVLDGGTLG---LE-LLDAIEGADRVIVVDAV 61 (145)
T ss_pred EEEECchhcccCcHHHHHHHHHHHhcCCCCCeEEEECCCCH---HH-HHHHHhCCCEEEEEEcc
Confidence 66777665 24667778887652 468999999873 33 33456678888888763
No 268
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=46.69 E-value=96 Score=27.80 Aligned_cols=69 Identities=23% Similarity=0.099 Sum_probs=45.5
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhcCC---cEEEEEeeeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcC
Q 020510 239 KDVTITAFSKIVGLSLKAAEILAKEGI---SAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFP 315 (325)
Q Consensus 239 ~dv~Iia~G~~~~~a~~Aa~~L~~~Gi---~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~ 315 (325)
.++.||- |...-++ |+..| |. ++.+++++ +-+.+.++.++.+..+++++.++. . .=.+|+..|.+
T Consensus 95 ~~v~iIP-giSS~q~--a~ARl---g~~~~~~~~islH---gr~~~~l~~~~~~~~~~vil~~~~-~--~P~~IA~~L~~ 162 (210)
T COG2241 95 EEVEIIP-GISSVQL--AAARL---GWPLQDTEVISLH---GRPVELLRPLLENGRRLVILTPDD-F--GPAEIAKLLTE 162 (210)
T ss_pred cceEEec-ChhHHHH--HHHHh---CCChHHeEEEEec---CCCHHHHHHHHhCCceEEEeCCCC-C--CHHHHHHHHHh
Confidence 4566664 5333322 23334 44 45666666 777788888887777888887765 1 24789999999
Q ss_pred CCcc
Q 020510 316 PAWL 319 (325)
Q Consensus 316 ~~~~ 319 (325)
+|+.
T Consensus 163 ~G~~ 166 (210)
T COG2241 163 NGIG 166 (210)
T ss_pred CCCC
Confidence 9986
No 269
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=46.62 E-value=99 Score=22.07 Aligned_cols=69 Identities=14% Similarity=0.118 Sum_probs=40.5
Q ss_pred chhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHH---HHHHHhC-CCeEEEEecCCCCCCHHHHHHHHHcCCCcc
Q 020510 247 SKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRST---INASVRK-TNRLVTVEEGFPQHGVGAEIWCAFFPPAWL 319 (325)
Q Consensus 247 G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~---l~~~~~~-~~~vvvvEe~~~~GGlg~~v~~~l~~~~~~ 319 (325)
-.....+.++.+.|++.+++...+++.... -+.+. +.+.... +-..++++ +...||+...+. +.++|.+
T Consensus 7 ~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~g~~~~P~v~~~-g~~igg~~~~~~--~~~~g~l 79 (82)
T cd03419 7 KSYCPYCKRAKSLLKELGVKPAVVELDQHE-DGSEIQDYLQELTGQRTVPNVFIG-GKFIGGCDDLMA--LHKSGKL 79 (82)
T ss_pred cCCCHHHHHHHHHHHHcCCCcEEEEEeCCC-ChHHHHHHHHHHhCCCCCCeEEEC-CEEEcCHHHHHH--HHHcCCc
Confidence 456677888888999999999988887652 22222 2222111 11245554 455788865544 3345544
No 270
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=46.29 E-value=1.9e+02 Score=29.97 Aligned_cols=112 Identities=14% Similarity=0.085 Sum_probs=65.6
Q ss_pred CCceeechh--hHHHHHHHHHHHhccC-CeeEEecccccH-HHHHHHHHHHHHhhccccCCCCccCCEEEEeC-CC-CCC
Q 020510 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTFNF-SMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NG-AAA 156 (325)
Q Consensus 83 p~R~i~~GI--aE~~~vg~A~GlA~~G-~~p~v~~~~~~f-~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G-~~~ 156 (325)
|.+|+..+- +=-..+..|.|++++. -|+++++. .+. .+.....|-. +.. .++|++++.- ++ ...
T Consensus 420 p~~~~~~~~~gsmG~glpaaiGa~lA~p~r~Vv~i~-GDG~f~m~~~EL~T-a~r--------~~lpvi~vV~NN~~y~~ 489 (595)
T PRK09107 420 PNRWMTSGGLGTMGYGLPAALGVQIAHPDALVIDIA-GDASIQMCIQEMST-AVQ--------YNLPVKIFILNNQYMGM 489 (595)
T ss_pred CCeEEcCCCchhhhhhHHHHHHHHHhCCCCeEEEEE-cCchhhccHHHHHH-HHH--------hCCCeEEEEEeCCccHH
Confidence 788886532 1123456677777664 46666665 442 3333333433 343 4677666542 33 220
Q ss_pred ---------CC--CCCc--ch-HHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEEe
Q 020510 157 ---------GV--GAQH--SH-CYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (325)
Q Consensus 157 ---------g~--G~tH--s~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir~ 205 (325)
+. ...+ .. .+..+.+.+ |+.-+.-.++.|+...++.++..++|.+|-.
T Consensus 490 i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lIeV 551 (595)
T PRK09107 490 VRQWQQLLHGNRLSHSYTEAMPDFVKLAEAY-GAVGIRCEKPGDLDDAIQEMIDVDKPVIFDC 551 (595)
T ss_pred HHHHHHHHhCCccccccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEEE
Confidence 10 1111 01 223566666 7788888999999999999999899999853
No 271
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=45.98 E-value=1.4e+02 Score=30.49 Aligned_cols=111 Identities=19% Similarity=0.106 Sum_probs=62.4
Q ss_pred CCceeechhh--HHHHHHHHHHHhccC-CeeEEecccccH-HHHHHHHHHHHHhhccccCCCCccCCEEEEeC-C-CCCC
Q 020510 83 PERVLDTPIT--EAGFTGIGVGAAYYG-LKPVVEFMTFNF-SMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N-GAAA 156 (325)
Q Consensus 83 p~R~i~~GIa--E~~~vg~A~GlA~~G-~~p~v~~~~~~f-~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~-G~~~ 156 (325)
|.+|+..+-- =-..++.|.|++++. -++++++. .+. .+.....+-. +.. .++|++++.- + +...
T Consensus 411 p~~~~~~~~~g~mG~glpaAiGa~la~p~~~vv~i~-GDG~f~m~~~eL~T-a~~--------~~l~i~ivV~NN~~yg~ 480 (572)
T PRK06456 411 PRTFLTSSGMGTMGFGLPAAMGAKLARPDKVVVDLD-GDGSFLMTGTNLAT-AVD--------EHIPVISVIFDNRTLGL 480 (572)
T ss_pred CCcEEcCCCcccccchhHHHHHHHHhCCCCeEEEEE-ccchHhcchHHHHH-HHH--------hCCCeEEEEEECCchHH
Confidence 6788864221 112346777777663 35555554 432 2222333432 332 4677665532 2 2220
Q ss_pred -C------CCC----C---cchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510 157 -G------VGA----Q---HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 157 -g------~G~----t---Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir 204 (325)
. .+. + +.-.+..+.+++ |+.-+...+..|+...+++++..++|.+|-
T Consensus 481 i~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lIe 541 (572)
T PRK06456 481 VRQVQDLFFGKRIVGVDYGPSPDFVKLAEAF-GALGFNVTTYEDIEKSLKSAIKEDIPAVIR 541 (572)
T ss_pred HHHHHHHhhCCCcccccCCCCCCHHHHHHHC-CCeeEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 010 1 111234566666 777788899999999999999988999874
No 272
>PRK10638 glutaredoxin 3; Provisional
Probab=45.86 E-value=52 Score=24.14 Aligned_cols=66 Identities=15% Similarity=0.158 Sum_probs=37.7
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCC-CeEEEEecCCCCCCHHHHH
Q 020510 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKT-NRLVTVEEGFPQHGVGAEI 309 (325)
Q Consensus 241 v~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~-~~vvvvEe~~~~GGlg~~v 309 (325)
++|.+ -.....+.+|.+.|++.|++.+++|+..-... .+.+.+.-... -.+++++ +...||+.+..
T Consensus 4 v~ly~-~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~-~~~l~~~~g~~~vP~i~~~-g~~igG~~~~~ 70 (83)
T PRK10638 4 VEIYT-KATCPFCHRAKALLNSKGVSFQEIPIDGDAAK-REEMIKRSGRTTVPQIFID-AQHIGGCDDLY 70 (83)
T ss_pred EEEEE-CCCChhHHHHHHHHHHcCCCcEEEECCCCHHH-HHHHHHHhCCCCcCEEEEC-CEEEeCHHHHH
Confidence 45544 24446788888899999999999988642111 12233222111 1345554 55679984433
No 273
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=45.76 E-value=90 Score=27.37 Aligned_cols=59 Identities=24% Similarity=0.250 Sum_probs=39.0
Q ss_pred EEEEEechhH--HHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHH---HHHhC--CCeEEEEecCC
Q 020510 241 VTITAFSKIV--GLSLKAAEILAKEGISAEVINLRSIRPLDRSTIN---ASVRK--TNRLVTVEEGF 300 (325)
Q Consensus 241 v~Iia~G~~~--~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~---~~~~~--~~~vvvvEe~~ 300 (325)
+++++++... ....++++.|+++||.+.+|.+.+.-+=. +.|. +.+.+ ..+++++-.+.
T Consensus 111 vi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~-~~l~~~~~~~~~~~~s~~~~~~~~~ 176 (187)
T cd01452 111 VAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDDNT-EKLTAFIDAVNGKDGSHLVSVPPGE 176 (187)
T ss_pred EEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCCCH-HHHHHHHHHhcCCCCceEEEeCCCC
Confidence 5566666333 35668899999999999999999874332 3333 33422 25678886654
No 274
>PLN02470 acetolactate synthase
Probab=45.59 E-value=1.7e+02 Score=30.14 Aligned_cols=37 Identities=11% Similarity=0.203 Sum_probs=31.1
Q ss_pred HHHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510 167 AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 167 ~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir 204 (325)
.++.+++ |+.-..-.++.|+..+++.+++.++|.+|-
T Consensus 517 ~~iA~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 553 (585)
T PLN02470 517 LKFAEGC-KIPAARVTRKSDLREAIQKMLDTPGPYLLD 553 (585)
T ss_pred HHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 4566666 777888899999999999999988999885
No 275
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=45.19 E-value=3.5e+02 Score=27.58 Aligned_cols=117 Identities=20% Similarity=0.221 Sum_probs=66.6
Q ss_pred HHHhCCCceeechhhHHHHHHHHHHHhcc-CCeeEEecccccHHHHHHHHHHHHHhhccccCCCCccC-CEEEEeCCCCC
Q 020510 78 LEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISV-PIVFRGPNGAA 155 (325)
Q Consensus 78 ~~~~gp~R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~-pvv~~~~~G~~ 155 (325)
.++.| =|||.+ -+||+++=+|..++.- |+--++.+-+...+.-++--+.| + +.|+ |+++++.....
T Consensus 47 aqalG-Ik~I~~-RnEqaA~yAA~A~gyLt~kpGV~lVvsGPGl~hal~gv~N--A--------~~n~wPll~IgGsa~~ 114 (571)
T KOG1185|consen 47 AQALG-IKFIGT-RNEQAAVYAASAYGYLTGKPGVLLVVSGPGLTHALAGVAN--A--------QMNCWPLLLIGGSAST 114 (571)
T ss_pred HHHcC-CeEeec-ccHHHHHHHHHHhhhhcCCCeEEEEecCChHHHHHHHhhh--h--------hhccCcEEEEecccch
Confidence 34564 689997 8999999888887754 44333333334456656555555 2 2344 88777421111
Q ss_pred --CCCCCCcchHHH-HHHhcCCCcEEEeeCCHHHHHHHHHHhHh-----CCCcEEEEeCcc
Q 020510 156 --AGVGAQHSHCYA-AWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENEL 208 (325)
Q Consensus 156 --~g~G~tHs~~~~-a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~ir~~~~ 208 (325)
.+-|.-+ ..+. .++|..-. .+..|.+..+.-..++.|++ .++|||+-.+..
T Consensus 115 ~~~~rGafQ-e~dQvel~rp~~K-~~~r~~~~~~I~~~i~kA~r~a~~G~PG~~yvD~P~d 173 (571)
T KOG1185|consen 115 LLENRGAFQ-ELDQVELFRPLCK-FVARPTSVRDIPPTIRKAVRAAMSGRPGPVYVDLPAD 173 (571)
T ss_pred hhhcccccc-cccHHhhhhhhhh-hccCCCChhhccHHHHHHHHHHhcCCCCceEEecccc
Confidence 1223222 1222 44444322 24567777777777777666 378999976544
No 276
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=45.15 E-value=66 Score=25.53 Aligned_cols=76 Identities=22% Similarity=0.233 Sum_probs=45.6
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEee--------------eccC--------CCHHHHHHHHhCCCeEEEE
Q 020510 239 KDVTITAFSKIVGLSLKAAEILAKEGISAEVINLR--------------SIRP--------LDRSTINASVRKTNRLVTV 296 (325)
Q Consensus 239 ~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~--------------~l~P--------~d~~~l~~~~~~~~~vvvv 296 (325)
++++|+..|.. |.++++.+++.|+++-+++-. ..-| ++.+.|.+.+++.+. ..+
T Consensus 3 kkvLIanrGei---a~r~~ra~r~~Gi~tv~v~s~~d~~s~~~~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~-~~i 78 (110)
T PF00289_consen 3 KKVLIANRGEI---AVRIIRALRELGIETVAVNSNPDTVSTHVDMADEAYFEPPGPSPESYLNIEAIIDIARKEGA-DAI 78 (110)
T ss_dssp SEEEESS-HHH---HHHHHHHHHHTTSEEEEEEEGGGTTGHHHHHSSEEEEEESSSGGGTTTSHHHHHHHHHHTTE-SEE
T ss_pred CEEEEECCCHH---HHHHHHHHHHhCCcceeccCchhcccccccccccceecCcchhhhhhccHHHHhhHhhhhcC-ccc
Confidence 46777778877 455555566679887666542 1335 788888888887753 444
Q ss_pred ecCCCCCCHHHHHHHHHcCCCc
Q 020510 297 EEGFPQHGVGAEIWCAFFPPAW 318 (325)
Q Consensus 297 Ee~~~~GGlg~~v~~~l~~~~~ 318 (325)
--++-.-....++++.+.+.|+
T Consensus 79 ~pGyg~lse~~~fa~~~~~~gi 100 (110)
T PF00289_consen 79 HPGYGFLSENAEFAEACEDAGI 100 (110)
T ss_dssp ESTSSTTTTHHHHHHHHHHTT-
T ss_pred ccccchhHHHHHHHHHHHHCCC
Confidence 4554333334566666655543
No 277
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=45.07 E-value=53 Score=29.12 Aligned_cols=56 Identities=11% Similarity=0.051 Sum_probs=38.4
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCC--CeEEEEecC
Q 020510 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKT--NRLVTVEEG 299 (325)
Q Consensus 241 v~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~--~~vvvvEe~ 299 (325)
++|++-|..-....++++.|++.|+.+-.|-+.. .|.+.|.+++... +.++.+++-
T Consensus 112 villTDG~s~~~~~~~a~~lk~~gv~i~~VgvG~---~~~~~L~~ias~~~~~~~f~~~~~ 169 (224)
T cd01475 112 GIVVTDGRPQDDVSEVAAKARALGIEMFAVGVGR---ADEEELREIASEPLADHVFYVEDF 169 (224)
T ss_pred EEEEcCCCCcccHHHHHHHHHHCCcEEEEEeCCc---CCHHHHHHHhCCCcHhcEEEeCCH
Confidence 3555666544556677888998898877777664 5788888877643 356766653
No 278
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=45.00 E-value=48 Score=32.52 Aligned_cols=75 Identities=13% Similarity=0.080 Sum_probs=56.7
Q ss_pred EEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCCe-EEEEecCCCCCCH--HHHHHHHHcCCC
Q 020510 243 ITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNR-LVTVEEGFPQHGV--GAEIWCAFFPPA 317 (325)
Q Consensus 243 Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~-vvvvEe~~~~GGl--g~~v~~~l~~~~ 317 (325)
||++-.--+-+++.++.|+.+|.+++.+.+..=--+|.+.|++++++... |-+.--++-+|-+ -.+|++.+.+.+
T Consensus 94 IIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~ 171 (386)
T COG1104 94 IITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERG 171 (386)
T ss_pred EEEcccccHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHHHHHHHHHcC
Confidence 56778888889999999988899999999988667899999999975543 3444445555544 356777777765
No 279
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=44.86 E-value=1.4e+02 Score=30.44 Aligned_cols=148 Identities=13% Similarity=0.150 Sum_probs=86.2
Q ss_pred HHHHHHHHHhc-C-CcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhcc-CCeeEEecccccH
Q 020510 43 LNSALDEEMSA-D-PKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNF 119 (325)
Q Consensus 43 ~~~~L~~l~~~-d-~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~-G~~p~v~~~~~~f 119 (325)
+++.|.+.+.. + +.|+.+-.|=. ..+.+.+. .+.-=|++.+ -+|-|+.=+|=|.|+. |+-.++.|| ...
T Consensus 6 vG~YL~~RL~qlgi~~iFGVPGDyN-----L~lLD~i~-~~~~lrWvGn-~NELNaaYAADGYaR~~Gi~alvTTf-GVG 77 (557)
T COG3961 6 VGDYLFDRLAQLGIKSIFGVPGDYN-----LSLLDKIY-SVPGLRWVGN-ANELNAAYAADGYARLNGISALVTTF-GVG 77 (557)
T ss_pred HHHHHHHHHHhcCCceeeeCCCccc-----HHHHHHhh-cCCCceeecc-cchhhhhhhhcchhhhcCceEEEEec-ccc
Confidence 45555554443 3 45665554422 22333333 3313467665 6899999999999976 888899887 555
Q ss_pred HHHHHHHHHHHHhhccccCCCCccCCEEEEeCCCCC---CCCC--CCcc---hHHH---HHHhcCC-CcEEEeeCC--HH
Q 020510 120 SMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA---AGVG--AQHS---HCYA---AWYASVP-GLKVLSPYS--SE 185 (325)
Q Consensus 120 ~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~G~~---~g~G--~tHs---~~~~---a~~~~iP-~~~V~~P~d--~~ 185 (325)
-+-|++-|-- +|. -++||+.+.. .+. ...| -+|. +.++ .|.+.+- --..+.+.+ +.
T Consensus 78 ELSA~NGIAG--SYA-------E~vpVvhIvG-~P~~~~q~~~~llHHTLG~gdF~~f~~M~~~itca~a~l~~~~~A~~ 147 (557)
T COG3961 78 ELSALNGIAG--SYA-------EHVPVVHIVG-VPTTSAQASGLLLHHTLGDGDFKVFHRMSKEITCAQAMLTDINTAPR 147 (557)
T ss_pred hhhhhcccch--hhh-------hcCCEEEEEc-CCCcchhhccchheeeccCCchHHHHHHhhhhhhHhhhcCCcchhHH
Confidence 6666666532 332 5789887642 122 1111 2332 1222 2333321 112344444 78
Q ss_pred HHHHHHHHhHhCCCcEEEEeCcc
Q 020510 186 DARGLLKAAIRDPDPVVFLENEL 208 (325)
Q Consensus 186 e~~~~l~~a~~~~~Pv~ir~~~~ 208 (325)
|..++++.++..++||||..+..
T Consensus 148 eIDrvi~~~~~~~RPvYI~lP~d 170 (557)
T COG3961 148 EIDRVIRTALKQRRPVYIGLPAD 170 (557)
T ss_pred HHHHHHHHHHHhcCCeEEEcchH
Confidence 89999999999999999986643
No 280
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=44.76 E-value=91 Score=27.25 Aligned_cols=63 Identities=16% Similarity=0.188 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeeeccCC----------CHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHH
Q 020510 250 VGLSLKAAEILAKEGISAEVINLRSIRPL----------DRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAF 313 (325)
Q Consensus 250 ~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~----------d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l 313 (325)
...+..+++.|+++|.+++++|+..+.+- +.+.+.+.++..+.+|++---+ .|++...+..++
T Consensus 17 ~~l~~~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y-~~s~pg~LKn~i 89 (191)
T PRK10569 17 SALLEYAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVATPVY-KASFSGALKTLL 89 (191)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEECCcc-CCCCCHHHHHHH
Confidence 34555666778888999999998865431 2234556677777777766555 577777776555
No 281
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=43.63 E-value=93 Score=26.50 Aligned_cols=51 Identities=20% Similarity=0.152 Sum_probs=36.9
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHH--HHHHHhCCC
Q 020510 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRST--INASVRKTN 291 (325)
Q Consensus 241 v~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~--l~~~~~~~~ 291 (325)
+++++.|.--..++.++..|.+.|+++.|+-+....+++.+. -.+.+++.+
T Consensus 29 ~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g 81 (169)
T PF03853_consen 29 LILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMG 81 (169)
T ss_dssp EEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT
T ss_pred EEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcC
Confidence 566778888899999999999999999997766666666653 223455554
No 282
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=43.07 E-value=3.2e+02 Score=28.04 Aligned_cols=111 Identities=14% Similarity=0.048 Sum_probs=61.6
Q ss_pred CCceeechh--hHHHHHHHHHHHhccC-CeeEEecccccH-HHHHHHHHHHHHhhccccCCCCccCCEEEEeC-CC-CCC
Q 020510 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTFNF-SMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NG-AAA 156 (325)
Q Consensus 83 p~R~i~~GI--aE~~~vg~A~GlA~~G-~~p~v~~~~~~f-~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G-~~~ 156 (325)
|.+|+..|- +=-..++.|.|++++. -++++++. .+. .+.....|-. +.. .++|++++.. ++ ...
T Consensus 411 p~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i~-GDG~f~m~~~eL~T-a~r--------~~l~v~ivV~NN~~yg~ 480 (574)
T PRK07979 411 PRRWINSGGLGTMGFGLPAALGVKMALPEETVVCVT-GDGSIQMNIQELST-ALQ--------YELPVLVLNLNNRYLGM 480 (574)
T ss_pred CCeEEeCCCccchhhHHHHHHHHHHhCCCCeEEEEE-cchhhhccHHHHHH-HHH--------hCCCeEEEEEeCchhhH
Confidence 688887641 1123456677777663 34555454 442 2222233333 443 4777666543 22 211
Q ss_pred --------CCCC---Cc--ch-HHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhC---CCcEEEE
Q 020510 157 --------GVGA---QH--SH-CYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD---PDPVVFL 204 (325)
Q Consensus 157 --------g~G~---tH--s~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~---~~Pv~ir 204 (325)
..+. .. .. .+..+.+++ |+.-+.-.++.|+...++.+++. ++|.+|-
T Consensus 481 i~~~q~~~~~~~~~~~~~~~~~d~~~iA~a~-G~~g~~v~~~~eL~~al~~a~~~~~~~~p~lIe 544 (574)
T PRK07979 481 VKQWQDMIYSGRHSQSYMQSLPDFVRLAEAY-GHVGIQISHPDELESKLSEALEQVRNNRLVFVD 544 (574)
T ss_pred HHHHHHHhcCCccccccCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhccCCCCcEEEE
Confidence 0111 00 01 223555665 66677789999999999999985 7898884
No 283
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=41.82 E-value=1.2e+02 Score=31.59 Aligned_cols=36 Identities=14% Similarity=0.225 Sum_probs=30.3
Q ss_pred HHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510 168 AWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 168 a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir 204 (325)
.+..++ |++-+.-.+++|+...++.+++.++|++|-
T Consensus 520 ~~A~a~-G~~g~~V~~~~el~~al~~a~~~~~p~lIe 555 (616)
T PRK07418 520 KLAEAF-GVKGMVISERDQLKDAIAEALAHDGPVLID 555 (616)
T ss_pred HHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 455555 777788899999999999999988999985
No 284
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=41.36 E-value=57 Score=26.68 Aligned_cols=43 Identities=28% Similarity=0.209 Sum_probs=35.3
Q ss_pred chhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCC
Q 020510 247 SKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKT 290 (325)
Q Consensus 247 G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~ 290 (325)
-.....+.+|.+.|++.||+.+.+|+.. .|.+.+.|.+.++.+
T Consensus 7 ~~~C~~C~ka~~~L~~~gi~~~~idi~~-~~~~~~eL~~~l~~~ 49 (131)
T PRK01655 7 SPSCTSCRKAKAWLEEHDIPFTERNIFS-SPLTIDEIKQILRMT 49 (131)
T ss_pred CCCChHHHHHHHHHHHcCCCcEEeeccC-ChhhHHHHHHHHHHh
Confidence 4566778889999999999999999864 788888887777765
No 285
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=41.30 E-value=1.7e+02 Score=29.83 Aligned_cols=150 Identities=21% Similarity=0.188 Sum_probs=74.8
Q ss_pred cccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHH--HHHHHhcc-CCeeEE
Q 020510 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTG--IGVGAAYY-GLKPVV 112 (325)
Q Consensus 36 ~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg--~A~GlA~~-G~~p~v 112 (325)
++.+-.++ ..+.+++-. ++.+++++ -+...++ -..+-...+|.|.+|.|--=..-|| +|.|+|.. =.+.++
T Consensus 379 pLN~~~~~-~~vre~L~~-~d~ilVsE-Gantmdi---gr~~l~~~~Pr~rLDaGtfgTMGVG~Gfalaaa~~~P~~~V~ 452 (571)
T KOG1185|consen 379 PLNYYQVL-QTVRELLPN-DDTILVSE-GANTMDI---GRTLLPPRGPRRRLDAGTFGTMGVGLGFALAAALAAPDRKVV 452 (571)
T ss_pred CCcHHHHH-HHHHHhcCC-CCcEEEec-CCcchhh---hhhhccCCCcccccCCccccccccchhHHHHHHhhCCCCeEE
Confidence 44444444 445555543 44444442 2222222 2334444559999998865433332 33333333 244455
Q ss_pred eccc--cc-HHHHHHHHHHHHHhhccccCCCCccCCEEEEeC--CCCCCCC--CCC--------cchH---------HHH
Q 020510 113 EFMT--FN-FSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP--NGAAAGV--GAQ--------HSHC---------YAA 168 (325)
Q Consensus 113 ~~~~--~~-f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~--~G~~~g~--G~t--------Hs~~---------~~a 168 (325)
+... +| |+.-=+|. +++ .++||+++.. +|.++.+ |.+ |..+ .+-
T Consensus 453 ~veGDsaFGfSaME~ET----~vR--------~~Lpvv~vV~NN~Giyg~d~~~~~~I~e~~~~~~~p~~~l~~~~rY~~ 520 (571)
T KOG1185|consen 453 CVEGDSAFGFSAMELET----FVR--------YKLPVVIVVGNNNGIYGLDDDGWKQISEQDPTLDLPPTALLANTRYDK 520 (571)
T ss_pred EEecCcccCcchhhHHH----HHH--------hcCCeEEEEecCCcccccCcccHHHHhhcCcccCCCcccccccccHHH
Confidence 4442 11 33322232 343 4789777643 3655221 211 1000 012
Q ss_pred HHhcCCCcEEEeeCCHHHHHHHHHHhHhCC-CcEEEE
Q 020510 169 WYASVPGLKVLSPYSSEDARGLLKAAIRDP-DPVVFL 204 (325)
Q Consensus 169 ~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~-~Pv~ir 204 (325)
++..+ |.+=+.-.+++|+...++++.+.. +|++|-
T Consensus 521 v~ka~-G~kG~~v~t~~el~~~l~~a~q~~~~psvIN 556 (571)
T KOG1185|consen 521 VAKAF-GGKGYFVSTVEELLAALQQACQDTDKPSVIN 556 (571)
T ss_pred HHHHc-CCCceeeCCHHHHHHHHHHHHhcCCCCeEEE
Confidence 22333 334455569999999999999975 898884
No 286
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=41.23 E-value=1.6e+02 Score=22.54 Aligned_cols=56 Identities=23% Similarity=0.206 Sum_probs=36.8
Q ss_pred EEEEEechhHHHHHHHHHHHH----hcCCcEEEEEeee---ccCCCHHHHHHHHhCCCeEEEEecCC
Q 020510 241 VTITAFSKIVGLSLKAAEILA----KEGISAEVINLRS---IRPLDRSTINASVRKTNRLVTVEEGF 300 (325)
Q Consensus 241 v~Iia~G~~~~~a~~Aa~~L~----~~Gi~~~Vi~~~~---l~P~d~~~l~~~~~~~~~vvvvEe~~ 300 (325)
+.|+++|+......-|++.|+ +.|+++.|---.. ..+++.+.+. ..+.|+++-+..
T Consensus 2 ~~i~ac~~G~a~s~laa~~L~~aa~~~g~~~~ve~~~~~g~~~~l~~~~i~----~Ad~vi~~~~~~ 64 (96)
T cd05569 2 VAVTACPTGIAHTYMAAEALEKAAKKLGWEIKVETQGSLGIENELTAEDIA----EADAVILAADVP 64 (96)
T ss_pred EEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecCcCccCcCCHHHHh----hCCEEEEecCCC
Confidence 467888888877777777665 4598887764444 6777766543 456666665543
No 287
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=41.13 E-value=1.2e+02 Score=31.34 Aligned_cols=84 Identities=18% Similarity=0.158 Sum_probs=50.7
Q ss_pred cEEEeeCCHHHHHHHHHHhHhCCCcEEEEeC-ccccCcccCccccccCCCccc---cCCceEEeeeCCcEEEEEechhHH
Q 020510 176 LKVLSPYSSEDARGLLKAAIRDPDPVVFLEN-ELLYGESFPVSAEVLDSSFCL---PIGKAKIEREGKDVTITAFSKIVG 251 (325)
Q Consensus 176 ~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir~~-~~l~~~~~p~~~~~~~~~~~~---~~gk~~vl~~G~dv~Iia~G~~~~ 251 (325)
..|+.|.+.+|...+++.|.+.+-|++.|-. .++.+...|.........-.+ .+.+...+.++. .+++-.|....
T Consensus 40 ~AVV~P~SteEVa~IVklC~e~~vPVIPRGgGTGLtGGAvP~~~~~dR~gVVIsl~RMNrIleID~~~-~VvVePGVtl~ 118 (564)
T PRK11183 40 LAVVFPGTLLELWRVLQACVAADKIIIMQAANTGLTGGSTPNGNDYDRDIVIISTLRLDKIQLLNNGK-QVLALPGTTLY 118 (564)
T ss_pred CEEEecCCHHHHHHHHHHHHHcCCeEEEeCCCcccccCcccCCCCCcCCEEEEEhhHcCCcEEECCCC-eEEEeCCCcHH
Confidence 3689999999999999999999999998732 233332222110000000011 233444444444 45566899999
Q ss_pred HHHHHHHHH
Q 020510 252 LSLKAAEIL 260 (325)
Q Consensus 252 ~a~~Aa~~L 260 (325)
...++++..
T Consensus 119 ~LeeaLk~~ 127 (564)
T PRK11183 119 QLEKALKPL 127 (564)
T ss_pred HHHHHHHHh
Confidence 888776543
No 288
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=41.10 E-value=19 Score=28.60 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=26.7
Q ss_pred CcEEEEEechhH-HHHHHHHHHHHhcCCcEEEEEee
Q 020510 239 KDVTITAFSKIV-GLSLKAAEILAKEGISAEVINLR 273 (325)
Q Consensus 239 ~dv~Iia~G~~~-~~a~~Aa~~L~~~Gi~~~Vi~~~ 273 (325)
.|++||++|... ..--+..+.|++.||.+++.|-.
T Consensus 53 peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T~ 88 (109)
T cd00248 53 PDILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTG 88 (109)
T ss_pred CCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCcH
Confidence 689999999644 33345667888999999998754
No 289
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=41.04 E-value=1.2e+02 Score=28.56 Aligned_cols=20 Identities=5% Similarity=0.194 Sum_probs=9.3
Q ss_pred CHHHHHHHHhCCCeEEEEec
Q 020510 279 DRSTINASVRKTNRLVTVEE 298 (325)
Q Consensus 279 d~~~l~~~~~~~~~vvvvEe 298 (325)
|.+.|.+++++++.++++|.
T Consensus 147 ~i~~I~~l~~~~g~~livD~ 166 (363)
T TIGR02326 147 PIEAVAKLAHRHGKVTIVDA 166 (363)
T ss_pred cHHHHHHHHHHcCCEEEEEc
Confidence 34445555554444444443
No 290
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=40.94 E-value=72 Score=26.45 Aligned_cols=55 Identities=13% Similarity=0.143 Sum_probs=34.8
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCC--CeEEEEec
Q 020510 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKT--NRLVTVEE 298 (325)
Q Consensus 241 v~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~--~~vvvvEe 298 (325)
+++++-|.......+++..|++.|+.+-.|-+.. -|.+.|.+++... ..++.++|
T Consensus 107 iiliTDG~~~~~~~~~~~~l~~~gv~i~~ig~g~---~~~~~L~~ia~~~~~~~~~~~~~ 163 (164)
T cd01472 107 LVVITDGKSQDDVEEPAVELKQAGIEVFAVGVKN---ADEEELKQIASDPKELYVFNVAD 163 (164)
T ss_pred EEEEcCCCCCchHHHHHHHHHHCCCEEEEEECCc---CCHHHHHHHHCCCchheEEeccC
Confidence 4445555443344456667888888777666554 3888888877666 35666554
No 291
>PRK11544 hycI hydrogenase 3 maturation protease; Provisional
Probab=40.83 E-value=1.1e+02 Score=25.65 Aligned_cols=55 Identities=24% Similarity=0.238 Sum_probs=37.2
Q ss_pred cEEEEEechhH----HHHHHHHHHHHhcC-CcEEEEEeeeccCCCHHHHHHHHh--CCCeEEEEec
Q 020510 240 DVTITAFSKIV----GLSLKAAEILAKEG-ISAEVINLRSIRPLDRSTINASVR--KTNRLVTVEE 298 (325)
Q Consensus 240 dv~Iia~G~~~----~~a~~Aa~~L~~~G-i~~~Vi~~~~l~P~d~~~l~~~~~--~~~~vvvvEe 298 (325)
+++|+++|+.+ .....+++.|++.. -+++++|..+ -|++.- ..++ +.++++++|=
T Consensus 2 ~~lVlGiGN~L~gDDGvG~~v~~~L~~~~~~~v~vid~gt-~~~~~~---~~i~~~~~d~vIiVDA 63 (156)
T PRK11544 2 TDVVLTVGNSMMGDDGAGPLLAEKLAAAPKGGWVVIDGGS-APENDI---VAIRELRPERLLIVDA 63 (156)
T ss_pred cEEEEEeCccccccCcHHHHHHHHHhccCCCCeEEEECCC-CHHHHH---HHHHhcCCCEEEEEEC
Confidence 36788888877 36677888887653 3688999998 344432 2333 4578888875
No 292
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=40.41 E-value=45 Score=29.60 Aligned_cols=48 Identities=25% Similarity=0.516 Sum_probs=35.4
Q ss_pred ccccHHHHHHHHHHHHHhc-CCcEEEEecCCCCccCccccchhHHHHhCCCceeec
Q 020510 35 KQMMVREALNSALDEEMSA-DPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDT 89 (325)
Q Consensus 35 ~~~s~~~a~~~~L~~l~~~-d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~ 89 (325)
+....|++|-++|.+.+++ ++++|++.. +.. -+...|-++| +.|.+|.
T Consensus 59 k~~~~r~~~d~~l~~~l~~~~~dlvvLAG----yMr--IL~~~fl~~~-~grIlNI 107 (200)
T COG0299 59 KEFPSREAFDRALVEALDEYGPDLVVLAG----YMR--ILGPEFLSRF-EGRILNI 107 (200)
T ss_pred ccCCCHHHHHHHHHHHHHhcCCCEEEEcc----hHH--HcCHHHHHHh-hcceEec
Confidence 4445688898888877765 799999853 222 2347799999 9999995
No 293
>PLN02735 carbamoyl-phosphate synthase
Probab=40.20 E-value=74 Score=35.67 Aligned_cols=79 Identities=20% Similarity=0.231 Sum_probs=49.2
Q ss_pred CcEEEEEechhH-HH-------HHHHHHHHHhcCCcEEEEEee--------------eccCCCHHHHHHHHhCCCe-EEE
Q 020510 239 KDVTITAFSKIV-GL-------SLKAAEILAKEGISAEVINLR--------------SIRPLDRSTINASVRKTNR-LVT 295 (325)
Q Consensus 239 ~dv~Iia~G~~~-~~-------a~~Aa~~L~~~Gi~~~Vi~~~--------------~l~P~d~~~l~~~~~~~~~-vvv 295 (325)
+++.|++.|... .+ +.++++.|++.|+.+-++|.. .+-|.+.+.+.+.+++.+- .|+
T Consensus 24 kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~~Vi~vd~np~t~~~~~~~aD~~yi~p~~~e~v~~ii~~e~~D~Ii 103 (1102)
T PLN02735 24 KKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYEVVLINSNPATIMTDPETADRTYIAPMTPELVEQVIAKERPDALL 103 (1102)
T ss_pred CEEEEECCCccccccceeecchHHHHHHHHHHcCCEEEEEeCCcccccCChhhCcEEEeCCCCHHHHHHHHHHhCCCEEE
Confidence 578899988752 22 456888899999999888863 2567788888877776542 222
Q ss_pred EecCCCCCCHHHHHHHHHcCCCccc
Q 020510 296 VEEGFPQHGVGAEIWCAFFPPAWLI 320 (325)
Q Consensus 296 vEe~~~~GGlg~~v~~~l~~~~~~~ 320 (325)
.- ..|..+-.++..|.+++.+.
T Consensus 104 p~---~gg~~gl~la~~l~~~g~Le 125 (1102)
T PLN02735 104 PT---MGGQTALNLAVALAESGILE 125 (1102)
T ss_pred EC---CCchhhHHHHHHHhhhCHHH
Confidence 21 12234444454555444443
No 294
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=39.96 E-value=77 Score=27.34 Aligned_cols=42 Identities=21% Similarity=0.281 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCC-eEEEEec
Q 020510 253 SLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN-RLVTVEE 298 (325)
Q Consensus 253 a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~-~vvvvEe 298 (325)
..++++.++++||.+.+|-+.. +.+.|++.++.++ +.+.+++
T Consensus 125 ~~~~~~~l~~~~I~v~~IgiG~----~~~~L~~ia~~tgG~~~~~~~ 167 (183)
T cd01453 125 IYETIDKLKKENIRVSVIGLSA----EMHICKEICKATNGTYKVILD 167 (183)
T ss_pred HHHHHHHHHHcCcEEEEEEech----HHHHHHHHHHHhCCeeEeeCC
Confidence 4467888988999998888863 3467888888775 6666655
No 295
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=39.80 E-value=23 Score=28.50 Aligned_cols=38 Identities=21% Similarity=0.311 Sum_probs=27.8
Q ss_pred eeCCcEEEEEechhH-HHHHHHHHHHHhcCCcEEEEEee
Q 020510 236 REGKDVTITAFSKIV-GLSLKAAEILAKEGISAEVINLR 273 (325)
Q Consensus 236 ~~G~dv~Iia~G~~~-~~a~~Aa~~L~~~Gi~~~Vi~~~ 273 (325)
.+..|++||++|... ..--+..+.|+++||.+++.+-.
T Consensus 52 ~~~peiliiGtG~~~~~~~~~~~~~l~~~gi~vevm~T~ 90 (114)
T cd05125 52 EPRPEILVIGTGRKSRPLSPELRKYFKKLGIAVEVVDTR 90 (114)
T ss_pred cCCCCEEEEccCCCCCcCCHHHHHHHHHcCCEEEEECHH
Confidence 445789999999754 33345567888899999997754
No 296
>TIGR00142 hycI hydrogenase maturation protease HycI. Hydrogenase maturation protease is a protease that is involved in the C-terminal processing of HycE,the large subunit of hydrogenase 3 from E.Coli. This protein seems to be found in E.Coli and in Archaea.
Probab=39.68 E-value=73 Score=26.43 Aligned_cols=53 Identities=19% Similarity=0.257 Sum_probs=34.3
Q ss_pred EEEEechhH----HHHHHHHHHHHhcCC--cEEEEEeeeccCCCHHHHHHHHh--CCCeEEEEec
Q 020510 242 TITAFSKIV----GLSLKAAEILAKEGI--SAEVINLRSIRPLDRSTINASVR--KTNRLVTVEE 298 (325)
Q Consensus 242 ~Iia~G~~~----~~a~~Aa~~L~~~Gi--~~~Vi~~~~l~P~d~~~l~~~~~--~~~~vvvvEe 298 (325)
+|+++|+.+ .....+++.|++... ++.++|..+. |++.. ..++ ++++++++|-
T Consensus 2 lVlGiGN~l~~DDG~G~~v~~~L~~~~~~~~v~v~d~gt~-~~~~~---~~~~~~~~d~viivDA 62 (146)
T TIGR00142 2 VLLCVGNELMGDDGAGPYLAEKCAAAPKEENWVVINAGTV-PENFT---VAIRELRPTHILIVDA 62 (146)
T ss_pred EEEEeCccccccCcHHHHHHHHHHhccCCCCEEEEECCCC-hHHHH---HHHHhcCCCEEEEEEC
Confidence 577788766 246677788876532 5788888886 44432 2333 4678888875
No 297
>TIGR00130 frhD coenzyme F420-reducing hydrogenase delta subunit (putative coenzyme F420 hydrogenase processing subunit). FrhD is not part of the active FRH heterotrimer, but is probably a protease required for maturation. Alternative name: 8-hydroxy-5-deazaflavin (F420) reducing hydrogenase (FRH) subunit delta.
Probab=39.18 E-value=69 Score=26.83 Aligned_cols=60 Identities=15% Similarity=0.174 Sum_probs=38.5
Q ss_pred CcEEEEEechhHH----HHHHHHHHHHhcC----CcEEEEEeeeccCCCHHHHHHHHhCCCeEEEEecC
Q 020510 239 KDVTITAFSKIVG----LSLKAAEILAKEG----ISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEG 299 (325)
Q Consensus 239 ~dv~Iia~G~~~~----~a~~Aa~~L~~~G----i~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe~ 299 (325)
++++|+++|+... ....+++.|++.+ -+++++|..+.-|-....+. .+.+.++++++|=-
T Consensus 3 ~~ilVlGiGN~l~gDDGvG~~v~~~L~~~~~~~~~~v~vid~gt~~~~~l~~~~-~~~~~d~vIivDA~ 70 (153)
T TIGR00130 3 HEILVVGCGNILFGDDGFGPAVIEYLKENGVEKPDNVCLIDAGTGAPHFVFTLI-PQSKWKKIIVVDIA 70 (153)
T ss_pred ceEEEEEeCccccccCcHhHHHHHHHHHhCCCCCCCeEEEECCCcHHHHHHHHh-hhcCCCEEEEEEcc
Confidence 4688999998772 5678888887532 24889998875321111111 24577888888753
No 298
>TIGR01718 Uridine-psphlse uridine phosphorylase. Sequences from Clostridium, Streptomyces, Treponema, Halobacterium and Pyrobaculum were included above trusted on the basis of sequence homology and a PAM-based neighbor-joining tree. A clade including second sequences from Halobacterium and Vibrio was somewhat more distantly related and may represent a slightly different substrate specificity - these were placed below the noise cutoff. More distantly related is a clade of archaeal sequences which as related to the DeoD family of inosine phosphorylases (TIGR00107) as they are to these uridine phosphorylases. This clade includes a characterized protein from Sulfolobus solfataricus which has been mis-named as a methylthioadenosine phosphorylase, but which acts on inosine and guanosine - it is unclear whether uridine has been evaluated as a substrate.
Probab=38.92 E-value=1.5e+02 Score=26.91 Aligned_cols=74 Identities=23% Similarity=0.249 Sum_probs=46.0
Q ss_pred EEEeeCCHHHHHHHHHHhHhCCCcEEEEeCccccCcccCccccccCCCccccCCceEEeeeCCcEEEEEechhHHHHHHH
Q 020510 177 KVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKA 256 (325)
Q Consensus 177 ~V~~P~d~~e~~~~l~~a~~~~~Pv~ir~~~~l~~~~~p~~~~~~~~~~~~~~gk~~vl~~G~dv~Iia~G~~~~~a~~A 256 (325)
.|+.|.||+++..+-+. ++ ++..+..+| .+.+..| .-+|.+++++++|.....|--+
T Consensus 14 ~vi~~Gdp~r~~~ia~~-l~--~~~~~~~~r----------------~~~~~~G----~~~g~~v~v~~~GiG~~~aai~ 70 (245)
T TIGR01718 14 YVILPGDPDRVEKIAAH-MD--KPVKVASNR----------------EFVTYRG----ELDGKPVIVCSTGIGGPSTAIA 70 (245)
T ss_pred eEEecCCHHHHHHHHHh-cC--CcEEEeccC----------------CEEEEEE----EECCEEEEEEcCCCCHHHHHHH
Confidence 68999999999987764 22 333222111 1111111 2267889999999988877777
Q ss_pred HHHHHhcCCcEEEEEeee
Q 020510 257 AEILAKEGISAEVINLRS 274 (325)
Q Consensus 257 a~~L~~~Gi~~~Vi~~~~ 274 (325)
+++|-+.|.+. +|.+-+
T Consensus 71 ~~eLi~~g~~~-iIr~Gt 87 (245)
T TIGR01718 71 VEELAQLGART-FIRVGT 87 (245)
T ss_pred HHHHHHhCCCE-EEEeec
Confidence 78777666653 444443
No 299
>PF12500 TRSP: TRSP domain C terminus to PRTase_2 ; InterPro: IPR022537 This domain is found in bacteria, and is typically between 174 and 217 amino acids in length. There is a conserved TRSP sequence motif.
Probab=38.52 E-value=56 Score=27.84 Aligned_cols=33 Identities=24% Similarity=0.294 Sum_probs=28.9
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCcEEE
Q 020510 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEV 269 (325)
Q Consensus 237 ~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~V 269 (325)
.+.++++|++|-.....+..|+.|+++|.++.+
T Consensus 56 ~~~~vLVLGTgEfMy~Pl~lA~~Le~~g~~V~~ 88 (155)
T PF12500_consen 56 PGERVLVLGTGEFMYLPLLLAEELEQAGADVRY 88 (155)
T ss_pred CCCcEEEEccchHHHHHHHHHHHHHhcCCceEE
Confidence 568999999999999999999999998866544
No 300
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=38.40 E-value=1.4e+02 Score=25.32 Aligned_cols=64 Identities=14% Similarity=0.247 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEEeeeccC--C--------CHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHH
Q 020510 249 IVGLSLKAAEILAKEGISAEVINLRSIRP--L--------DRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAF 313 (325)
Q Consensus 249 ~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P--~--------d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l 313 (325)
....+..+++.+++.|.+++++|+..+.. + +.+.+.+.++..+.+|++---+ .+++...+..++
T Consensus 15 t~~l~~~~~~~l~~~~~~~~~idl~~l~~~~~~~~~~~~~~~~~l~~~i~~AD~iI~~sP~Y-~~sip~~LK~~i 88 (171)
T TIGR03567 15 SSALLRHVREALQEQGVEVDHLSVRDLPAEDLLFARFDSPAIKAATAQVAQADGVVVATPVY-KASYSGVLKALL 88 (171)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEecCCChHHhhhcCCCCHHHHHHHHHHHHCCEEEEECCcc-cCCCCHHHHHHH
Confidence 34556666677877789999999875421 1 1234566666777766665544 578877777665
No 301
>COG2820 Udp Uridine phosphorylase [Nucleotide transport and metabolism]
Probab=38.36 E-value=54 Score=30.02 Aligned_cols=77 Identities=25% Similarity=0.198 Sum_probs=51.4
Q ss_pred cEEEeeCCHHHHHHHHHHhHhCCCcEEEEeCccccCcccCccccccCCCccccCCceEEeeeCCcEEEEEechhHHHHHH
Q 020510 176 LKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLK 255 (325)
Q Consensus 176 ~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir~~~~l~~~~~p~~~~~~~~~~~~~~gk~~vl~~G~dv~Iia~G~~~~~a~~ 255 (325)
-.|+.|.||.-+..+-+ ..++|..+-.+|. |....|. -+|+.+++.++|....-+--
T Consensus 18 ~~vilpGdP~R~~~iA~---lld~~~~va~~Re----------------f~~~~g~----~~g~~v~v~StGIGgPSaaI 74 (248)
T COG2820 18 TLVILPGDPERVEKIAK---LLDNPVLVASNRE----------------FRTYTGT----YNGKPVTVCSTGIGGPSAAI 74 (248)
T ss_pred ceEEecCCHHHHHHHHH---Hhccchhhhhccc----------------eEEEEEE----EcCeEEEEEecCCCCchHHH
Confidence 45999999998876655 3456766643332 1111111 24788999999998888878
Q ss_pred HHHHHHhcCCcEEEEEeeecc
Q 020510 256 AAEILAKEGISAEVINLRSIR 276 (325)
Q Consensus 256 Aa~~L~~~Gi~~~Vi~~~~l~ 276 (325)
|.++|..-|.++= |.+-|--
T Consensus 75 AvEEL~~lGa~tf-iRVGT~G 94 (248)
T COG2820 75 AVEELARLGAKTF-IRVGTTG 94 (248)
T ss_pred HHHHHHhcCCeEE-EEeeccc
Confidence 8889988886643 5555543
No 302
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=38.32 E-value=1.6e+02 Score=28.23 Aligned_cols=62 Identities=18% Similarity=0.205 Sum_probs=30.2
Q ss_pred ccCCEEEEeCC-CCCCCCCCCcc---h-HHHHHHhc--CCCcEEEeeCCHHHH----HHHHHHhHhCCCcEEEEe
Q 020510 142 ISVPIVFRGPN-GAAAGVGAQHS---H-CYAAWYAS--VPGLKVLSPYSSEDA----RGLLKAAIRDPDPVVFLE 205 (325)
Q Consensus 142 ~~~pvv~~~~~-G~~~g~G~tHs---~-~~~a~~~~--iP~~~V~~P~d~~e~----~~~l~~a~~~~~Pv~ir~ 205 (325)
.++|++++.-+ +.... ..++. . .+..+..+ +|++.| .-.|..++ ..+++.+.+.++|++|-.
T Consensus 171 ~~LPvi~Vv~NN~~~~~-~~~~~~~~~~d~~~~a~a~G~~~~~V-dg~d~~av~~a~~~A~~~a~~~~gP~lIev 243 (341)
T TIGR03181 171 FKAPVVFFVQNNQWAIS-VPRSKQTAAPTLAQKAIAYGIPGVQV-DGNDVLAVYAVTKEAVERARSGGGPTLIEA 243 (341)
T ss_pred cCCCEEEEEECCCCccc-cchhhhhCCcCHHHHHhhCCCCEEEE-CCCCHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 58898887643 32211 11111 1 12233333 555443 23333332 455666666688999853
No 303
>PRK08114 cystathionine beta-lyase; Provisional
Probab=37.85 E-value=85 Score=30.86 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=10.3
Q ss_pred CCHHHHHHHHhCCC--eEEEEecCC
Q 020510 278 LDRSTINASVRKTN--RLVTVEEGF 300 (325)
Q Consensus 278 ~d~~~l~~~~~~~~--~vvvvEe~~ 300 (325)
.|.+.|.+.+++.+ .+++||.-.
T Consensus 164 ~DI~~Ia~ia~~~g~g~~lvVDnT~ 188 (395)
T PRK08114 164 HDVPAIVAAVRSVNPDAVIMIDNTW 188 (395)
T ss_pred ecHHHHHHHHHHhCCCCEEEEECCC
Confidence 34455555554432 344444433
No 304
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=37.84 E-value=2.8e+02 Score=26.20 Aligned_cols=64 Identities=14% Similarity=0.129 Sum_probs=47.2
Q ss_pred eCCcEEEEEech-----hHHHHHHHHHHHHhcCC-cEEEEEeeecc-----------CCCHHHHHHHHhC--CCeEEEEe
Q 020510 237 EGKDVTITAFSK-----IVGLSLKAAEILAKEGI-SAEVINLRSIR-----------PLDRSTINASVRK--TNRLVTVE 297 (325)
Q Consensus 237 ~G~dv~Iia~G~-----~~~~a~~Aa~~L~~~Gi-~~~Vi~~~~l~-----------P~d~~~l~~~~~~--~~~vvvvE 297 (325)
.|+|+.||.+.. .+-+.+-.++.|++.|- ++.+|=++.-+ |+..+.+.+.+.. .++|+|+|
T Consensus 35 ~g~~v~ii~s~~~p~nd~l~ell~~~~a~r~~~a~~i~~ViPYl~YaRQDr~~~~~e~isak~va~lL~~~g~d~vitvD 114 (304)
T PRK03092 35 RGCDAFVLQSHTAPINKWLMEQLIMIDALKRASAKRITVVLPFYPYARQDKKHRGREPISARLVADLFKTAGADRIMTVD 114 (304)
T ss_pred CCCEEEEEeCCCCCCcHHHHHHHHHHHHHHHcCCCeEEEEEecccccccccccCCCCCccHHHHHHHHHhcCCCeEEEEe
Confidence 368898888742 34466677788888775 57777665443 7888888888876 47999999
Q ss_pred cCC
Q 020510 298 EGF 300 (325)
Q Consensus 298 e~~ 300 (325)
-|.
T Consensus 115 ~H~ 117 (304)
T PRK03092 115 LHT 117 (304)
T ss_pred cCh
Confidence 997
No 305
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=37.46 E-value=85 Score=26.10 Aligned_cols=36 Identities=25% Similarity=0.415 Sum_probs=20.6
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeee
Q 020510 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRS 274 (325)
Q Consensus 237 ~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~ 274 (325)
+|++++|+.-+..+. ...+..|.++|..+.+.+-++
T Consensus 27 ~gk~v~VvGrs~~vG--~pla~lL~~~gatV~~~~~~t 62 (140)
T cd05212 27 DGKKVLVVGRSGIVG--APLQCLLQRDGATVYSCDWKT 62 (140)
T ss_pred CCCEEEEECCCchHH--HHHHHHHHHCCCEEEEeCCCC
Confidence 455666654444443 334556666777777766544
No 306
>PRK10824 glutaredoxin-4; Provisional
Probab=37.04 E-value=73 Score=25.65 Aligned_cols=67 Identities=18% Similarity=0.171 Sum_probs=44.1
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhC-----CCeEEEEecCCCCCCHHHH
Q 020510 238 GKDVTITAFS----KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRK-----TNRLVTVEEGFPQHGVGAE 308 (325)
Q Consensus 238 G~dv~Iia~G----~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~-----~~~vvvvEe~~~~GGlg~~ 308 (325)
..+|+|++-| +....+.+|.+.|++.|++..++|+.. |.+ +++.++. |-.-|.+.... .||....
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~----d~~-~~~~l~~~sg~~TVPQIFI~G~~-IGG~ddl 87 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQ----NPD-IRAELPKYANWPTFPQLWVDGEL-VGGCDIV 87 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecC----CHH-HHHHHHHHhCCCCCCeEEECCEE-EcChHHH
Confidence 4679999988 467888888899999999999998853 323 3333332 21235555444 5887554
Q ss_pred HH
Q 020510 309 IW 310 (325)
Q Consensus 309 v~ 310 (325)
.+
T Consensus 88 ~~ 89 (115)
T PRK10824 88 IE 89 (115)
T ss_pred HH
Confidence 44
No 307
>PRK08105 flavodoxin; Provisional
Probab=36.85 E-value=39 Score=28.28 Aligned_cols=56 Identities=13% Similarity=0.083 Sum_probs=32.5
Q ss_pred EEEechhHHHHHHHHHHH----HhcCCcEEEEEeeeccCCCHHHHHHHHhCCCeEEEEecCCCCCCH
Q 020510 243 ITAFSKIVGLSLKAAEIL----AKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGV 305 (325)
Q Consensus 243 Iia~G~~~~~a~~Aa~~L----~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGl 305 (325)
.|-||+....+.+.|+.| ++.|+++.|+++..+.++. ..+.+.++++--.+-.|-+
T Consensus 5 ~I~YgS~tGnte~~A~~l~~~l~~~g~~~~~~~~~~~~~~~-------~~~~~~vi~~~sT~G~Ge~ 64 (149)
T PRK08105 5 GIFVGTVYGNALLVAEEAEAILTAQGHEVTLFEDPELSDWQ-------PYQDELVLVVTSTTGQGDL 64 (149)
T ss_pred EEEEEcCchHHHHHHHHHHHHHHhCCCceEEechhhCCchh-------cccCCeEEEEECCCCCCCC
Confidence 345777777776666555 4558999998876543221 1223456655544434433
No 308
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=36.19 E-value=1.7e+02 Score=23.64 Aligned_cols=74 Identities=5% Similarity=-0.074 Sum_probs=46.3
Q ss_pred EEEEEechhHHHHHHHHHHHH----hcCCcEEEEEeee--c-----------cCCCHHHHHHHHhC-CCeEEEEecCCCC
Q 020510 241 VTITAFSKIVGLSLKAAEILA----KEGISAEVINLRS--I-----------RPLDRSTINASVRK-TNRLVTVEEGFPQ 302 (325)
Q Consensus 241 v~Iia~G~~~~~a~~Aa~~L~----~~Gi~~~Vi~~~~--l-----------~P~d~~~l~~~~~~-~~~vvvvEe~~~~ 302 (325)
++|++.|+....+.+..+.+. +.--+..|--..+ + .|-..+.|.++.+. +.+|+|+-=|...
T Consensus 3 illv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~afts~~i~~~l~~~~~~~p~~~eaL~~l~~~G~~~V~V~Pl~l~~ 82 (127)
T cd03412 3 ILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFTSRMIRKKLKKRGIEVDTPEEALAKLAADGYTEVIVQSLHIIP 82 (127)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEecHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCEEEEEeCeeEC
Confidence 678889988876666555443 3322233322222 1 46667888877664 5688888888877
Q ss_pred CCHHHHHHHHHc
Q 020510 303 HGVGAEIWCAFF 314 (325)
Q Consensus 303 GGlg~~v~~~l~ 314 (325)
|.-...|.+.+.
T Consensus 83 G~e~~di~~~v~ 94 (127)
T cd03412 83 GEEYEKLKREVD 94 (127)
T ss_pred cHHHHHHHHHHH
Confidence 766666666554
No 309
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=35.74 E-value=2.6e+02 Score=26.35 Aligned_cols=64 Identities=19% Similarity=0.178 Sum_probs=45.9
Q ss_pred eCCcEEEEEechh----HHHHHHHHHHHHhcCC-cEEEEEeeec-----------cCCCHHHHHHHHhC-CCeEEEEecC
Q 020510 237 EGKDVTITAFSKI----VGLSLKAAEILAKEGI-SAEVINLRSI-----------RPLDRSTINASVRK-TNRLVTVEEG 299 (325)
Q Consensus 237 ~G~dv~Iia~G~~----~~~a~~Aa~~L~~~Gi-~~~Vi~~~~l-----------~P~d~~~l~~~~~~-~~~vvvvEe~ 299 (325)
.|+|+.||.+... +-+.+-.++.|++.|. ++.++=++.- -|+..+.+.+++.. .++|+|+|-|
T Consensus 48 ~g~~V~ivqs~~~~n~~l~elll~~~alr~~~a~~i~~ViPY~~YaRqDr~~~~ge~isak~vA~ll~~~~d~vit~DlH 127 (301)
T PRK07199 48 AGRTVVLVCSLDRPDEKLLPLLFAAEAARELGARRVGLVAPYLAYMRQDIAFHPGEAISQRHFARLLSGSFDRLVTVDPH 127 (301)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHHHHHcCCCeEEEEeecccccccccccCCCCCccHHHHHHHHHhhcCeEEEEecc
Confidence 3689999988643 4566677788888775 4666654432 27777777777764 6789999999
Q ss_pred C
Q 020510 300 F 300 (325)
Q Consensus 300 ~ 300 (325)
.
T Consensus 128 ~ 128 (301)
T PRK07199 128 L 128 (301)
T ss_pred c
Confidence 5
No 310
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=35.68 E-value=2.5e+02 Score=28.88 Aligned_cols=111 Identities=20% Similarity=0.142 Sum_probs=61.5
Q ss_pred CCceeechh-hHH-HHHHHHHHHhccC-CeeEEecccccH-HHHHHHHHHHHHhhccccCCCCccCCEEEEeC-C-CCCC
Q 020510 83 PERVLDTPI-TEA-GFTGIGVGAAYYG-LKPVVEFMTFNF-SMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N-GAAA 156 (325)
Q Consensus 83 p~R~i~~GI-aE~-~~vg~A~GlA~~G-~~p~v~~~~~~f-~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~-G~~~ 156 (325)
|.+|+..+- .=. ..++.|.|++++. -+|++.+. .+. .+.....+.+ +.. .++|++++.. + +...
T Consensus 425 p~~~~~~~~~g~mG~glp~aiGa~la~p~r~vv~i~-GDG~f~~~~~el~T-a~~--------~~lpv~ivV~NN~~y~~ 494 (588)
T PRK07525 425 GRKYLAPGSFGNCGYAFPAIIGAKIACPDRPVVGFA-GDGAWGISMNEVMT-AVR--------HNWPVTAVVFRNYQWGA 494 (588)
T ss_pred CCeEEccccccccccHHHHHHHHHHhCCCCcEEEEE-cCchHhccHHHHHH-HHH--------hCCCeEEEEEeCchhHH
Confidence 788886432 111 2456777777764 46666655 432 2223333443 332 5788766543 2 2210
Q ss_pred ---------C---CCCCcch--HHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhC---CCcEEEE
Q 020510 157 ---------G---VGAQHSH--CYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD---PDPVVFL 204 (325)
Q Consensus 157 ---------g---~G~tHs~--~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~---~~Pv~ir 204 (325)
+ .+..... .+..+.+.+ |+.-+.-.++.|+...++.+++. ++|.+|-
T Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~p~lIe 558 (588)
T PRK07525 495 EKKNQVDFYNNRFVGTELDNNVSYAGIAEAM-GAEGVVVDTQEELGPALKRAIDAQNEGKTTVIE 558 (588)
T ss_pred HHHHHHHHhCCCcccccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 0 1111111 223455555 55666678999999999999975 4798874
No 311
>PRK06703 flavodoxin; Provisional
Probab=35.61 E-value=1.2e+02 Score=25.00 Aligned_cols=29 Identities=3% Similarity=-0.071 Sum_probs=18.4
Q ss_pred chhHHHHHHHHHHHHhcCCcEEEEEeeec
Q 020510 247 SKIVGLSLKAAEILAKEGISAEVINLRSI 275 (325)
Q Consensus 247 G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l 275 (325)
|++-..|...++.|++.|+++++.++...
T Consensus 13 GnT~~iA~~ia~~l~~~g~~v~~~~~~~~ 41 (151)
T PRK06703 13 GNTEDIADLIKVSLDAFDHEVVLQEMDGM 41 (151)
T ss_pred chHHHHHHHHHHHHHhcCCceEEEehhhC
Confidence 33444555555566666888888887654
No 312
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=35.61 E-value=30 Score=27.47 Aligned_cols=37 Identities=16% Similarity=0.089 Sum_probs=26.9
Q ss_pred eCCcEEEEEechhH-HHHHHHHHHHHhcCCcEEEEEee
Q 020510 237 EGKDVTITAFSKIV-GLSLKAAEILAKEGISAEVINLR 273 (325)
Q Consensus 237 ~G~dv~Iia~G~~~-~~a~~Aa~~L~~~Gi~~~Vi~~~ 273 (325)
...|++||++|... ..--+..+.|++.||.+++.|-.
T Consensus 51 ~~peiliiGTG~~~~~~~~~~~~~l~~~gi~vE~m~T~ 88 (109)
T cd05560 51 LQPEVILLGTGERQRFPPPALLAPLLARGIGVEVMDTQ 88 (109)
T ss_pred cCCCEEEEecCCCCCcCCHHHHHHHHHcCCeEEEECHH
Confidence 34689999999553 33445557888899999987754
No 313
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=35.60 E-value=1.1e+02 Score=28.62 Aligned_cols=55 Identities=16% Similarity=0.236 Sum_probs=36.6
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeee----------ccCCCHHHHHHHHhCCCeEE
Q 020510 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRS----------IRPLDRSTINASVRKTNRLV 294 (325)
Q Consensus 237 ~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~----------l~P~d~~~l~~~~~~~~~vv 294 (325)
.|+.+.|+++|.+-. .+++.|+..|.++.|++-.. ..+++.+.+.+.+++.+-|+
T Consensus 150 ~gk~v~IiG~G~iG~---avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVi 214 (287)
T TIGR02853 150 HGSNVMVLGFGRTGM---TIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVI 214 (287)
T ss_pred CCCEEEEEcChHHHH---HHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEE
Confidence 467899999998654 45566777788888887532 23455555666676666443
No 314
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=35.30 E-value=1.1e+02 Score=31.93 Aligned_cols=103 Identities=19% Similarity=0.266 Sum_probs=59.9
Q ss_pred HHHHHHHHHhccC-CeeEEecccccHHHHHHHHHHHHHhhccccCCCCccCCEEEEeCC----CCCCC---CCC------
Q 020510 95 GFTGIGVGAAYYG-LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN----GAAAG---VGA------ 160 (325)
Q Consensus 95 ~~vg~A~GlA~~G-~~p~v~~~~~~f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~----G~~~g---~G~------ 160 (325)
..+|+|.|++..+ .+++..+==++|.--++..|+|.+. .+.+++++.-+ ..+++ .|.
T Consensus 432 ssig~a~g~~~~~~k~~va~iGDsTF~HsGi~~l~nAV~---------n~~~~~~vvLdN~~tAMTGgQp~pg~~~~~~g 502 (640)
T COG4231 432 SSIGIAGGLSFASTKKIVAVIGDSTFFHSGILALINAVY---------NKANILVVVLDNRTTAMTGGQPHPGTGVAAEG 502 (640)
T ss_pred chhhhccccccccCCceEEEeccccccccCcHHHHHHHh---------cCCCeEEEEEeccchhccCCCCCCCcccccCC
Confidence 3467888888554 4444433223455566667887554 24454443221 12222 111
Q ss_pred --CcchHHHHHHhc--CCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEEeC
Q 020510 161 --QHSHCYAAWYAS--VPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLEN 206 (325)
Q Consensus 161 --tHs~~~~a~~~~--iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir~~ 206 (325)
+-...++.+-+. +--+.+..|.|-.++.+.++.+++.++|.+|...
T Consensus 503 ~~~~~i~iee~~r~~Gv~~v~~vdp~~~~~~~~~~keale~~gpsViiak 552 (640)
T COG4231 503 TKSTAIVIEEVVRAMGVEDVETVDPYDVKELSEAIKEALEVPGPSVIIAK 552 (640)
T ss_pred CccceeEhhHhhhhcCceeeeccCCcchHHHHHHHHHHhcCCCceEEEEc
Confidence 111233444443 3456677799999999999999999999888644
No 315
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=35.20 E-value=1.1e+02 Score=21.68 Aligned_cols=51 Identities=10% Similarity=0.177 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCCeEEEEecCCCCC--CHHHHHHHHHc
Q 020510 255 KAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQH--GVGAEIWCAFF 314 (325)
Q Consensus 255 ~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~G--Glg~~v~~~l~ 314 (325)
..++.|+++|++++.++- |++ .+. .+...+|+++.....- -=.+.+.+++.
T Consensus 9 a~~~~L~~~g~~v~~~~~----~~~--~l~---~~~~tll~i~~~~~~~~~~~~~~l~~~v~ 61 (70)
T PF14258_consen 9 ALYQLLEEQGVKVERWRK----PYE--ALE---ADDGTLLVIGPDLRLSEPEEAEALLEWVE 61 (70)
T ss_pred HHHHHHHHCCCeeEEecc----cHH--HhC---CCCCEEEEEeCCCCCCchHHHHHHHHHHH
Confidence 455678888888765543 332 332 1445677777764322 11235555554
No 316
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=35.17 E-value=1.9e+02 Score=26.66 Aligned_cols=75 Identities=15% Similarity=0.096 Sum_probs=31.5
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhcCCc-EEEEEeeeccCCCHH----HHHHHHhCCC-eEEEEecCCC---CCCHHHHH
Q 020510 239 KDVTITAFSKIVGLSLKAAEILAKEGIS-AEVINLRSIRPLDRS----TINASVRKTN-RLVTVEEGFP---QHGVGAEI 309 (325)
Q Consensus 239 ~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~-~~Vi~~~~l~P~d~~----~l~~~~~~~~-~vvvvEe~~~---~GGlg~~v 309 (325)
.++++++.|..-..+.++.+..-..|.+ +-+|.-+.+...|.- .|...+++.+ .+|+.=+.+. .|.++..+
T Consensus 55 ~~Vtvvs~Gp~~a~~~~~lr~aLAmGaD~avli~d~~~~g~D~~~tA~~La~ai~~~~~DLVl~G~~s~D~~tgqvg~~l 134 (256)
T PRK03359 55 AQVTALSVGGKALTNAKGRKDVLSRGPDELIVVIDDQFEQALPQQTASALAAAAQKAGFDLILCGDGSSDLYAQQVGLLV 134 (256)
T ss_pred CEEEEEEECCcchhhHHHHHHHHHcCCCEEEEEecCcccCcCHHHHHHHHHHHHHHhCCCEEEEcCccccCCCCcHHHHH
Confidence 4677777775432222222221123544 333333333333432 2444444421 2333333332 23456666
Q ss_pred HHHH
Q 020510 310 WCAF 313 (325)
Q Consensus 310 ~~~l 313 (325)
++.|
T Consensus 135 Ae~L 138 (256)
T PRK03359 135 GEIL 138 (256)
T ss_pred HHHh
Confidence 6665
No 317
>PRK05967 cystathionine beta-lyase; Provisional
Probab=35.11 E-value=1.6e+02 Score=28.99 Aligned_cols=25 Identities=12% Similarity=0.278 Sum_probs=14.6
Q ss_pred cCCCHHHHHHHHhCCCeEEEEecCC
Q 020510 276 RPLDRSTINASVRKTNRLVTVEEGF 300 (325)
Q Consensus 276 ~P~d~~~l~~~~~~~~~vvvvEe~~ 300 (325)
...|.+.|.+.+++++.++++|+-+
T Consensus 164 ~v~dl~~I~~la~~~g~~vvVD~t~ 188 (395)
T PRK05967 164 EMQDIPAIAEAAHRHGAIVMMDNTW 188 (395)
T ss_pred cHHHHHHHHHHHHHhCCEEEEECCc
Confidence 3445556666666666666666654
No 318
>PLN02573 pyruvate decarboxylase
Probab=35.02 E-value=3.7e+02 Score=27.73 Aligned_cols=145 Identities=10% Similarity=-0.014 Sum_probs=73.1
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechh-h-HHHHHHHHHHHhccC-CeeEEeccccc-
Q 020510 43 LNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPI-T-EAGFTGIGVGAAYYG-LKPVVEFMTFN- 118 (325)
Q Consensus 43 ~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GI-a-E~~~vg~A~GlA~~G-~~p~v~~~~~~- 118 (325)
+.+.|.+.+. +..+++.+ .+.+ .+. ...+. ...+.+|+..+- . =-..+..|.|++++- -++++++. .+
T Consensus 385 ~~~~l~~~l~-~d~iiv~D--~G~~--~~~-~~~~~-~~~~~~~~~~~~~gsmG~glpaaiGa~lA~p~r~vv~i~-GDG 456 (578)
T PLN02573 385 LFKHIQKMLS-GDTAVIAE--TGDS--WFN-CQKLK-LPEGCGYEFQMQYGSIGWSVGATLGYAQAAPDKRVIACI-GDG 456 (578)
T ss_pred HHHHHHHhcC-CCCEEEEe--cccc--hhh-HHhcc-CCCCCeEEeecchhhhhhhhhHHHHHHHhCCCCceEEEE-ecc
Confidence 5555666554 33555554 3421 111 11221 111345665442 1 111344666666552 35555554 43
Q ss_pred HHHHHHHHHHHHHhhccccCCCCccCCEEEEeC-CCCCC--C--C----CCCcchHHHHHHhcCC---C-cEEEeeCCHH
Q 020510 119 FSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAA--G--V----GAQHSHCYAAWYASVP---G-LKVLSPYSSE 185 (325)
Q Consensus 119 f~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~G~~~--g--~----G~tHs~~~~a~~~~iP---~-~~V~~P~d~~ 185 (325)
-++.....|-. +.. .++|++++.. ++.++ . . +..+.-.+..+.+.+- | +.-..-.+..
T Consensus 457 ~f~m~~~EL~T-a~r--------~~lpvv~vV~NN~~yg~~~~~~~~~~~~~~~~d~~~lA~a~G~~~g~~~~~~V~~~~ 527 (578)
T PLN02573 457 SFQVTAQDVST-MIR--------CGQKSIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTAKVRTEE 527 (578)
T ss_pred HHHhHHHHHHH-HHH--------cCCCCEEEEEeCCceeEEEeecccCccccCCCCHHHHHHHhcCcCCceeEEEecCHH
Confidence 23334444533 443 4677666542 33221 0 1 1111112235666652 3 7788888999
Q ss_pred HHHHHHHHhHh--CCCcEEEE
Q 020510 186 DARGLLKAAIR--DPDPVVFL 204 (325)
Q Consensus 186 e~~~~l~~a~~--~~~Pv~ir 204 (325)
|+...++.++. .++|.+|-
T Consensus 528 eL~~al~~a~~~~~~~p~lie 548 (578)
T PLN02573 528 ELIEAIATATGEKKDCLCFIE 548 (578)
T ss_pred HHHHHHHHHHhhCCCCcEEEE
Confidence 99999999984 57899985
No 319
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=34.93 E-value=1.4e+02 Score=33.36 Aligned_cols=53 Identities=19% Similarity=0.313 Sum_probs=38.4
Q ss_pred CcEEEEEechhH-H-------HHHHHHHHHHhcCCcEEEEEee--------------eccCCCHHHHHHHHhCCC
Q 020510 239 KDVTITAFSKIV-G-------LSLKAAEILAKEGISAEVINLR--------------SIRPLDRSTINASVRKTN 291 (325)
Q Consensus 239 ~dv~Iia~G~~~-~-------~a~~Aa~~L~~~Gi~~~Vi~~~--------------~l~P~d~~~l~~~~~~~~ 291 (325)
+++.|++.|... . -+.++++.|+++|+.+-++|.. .+-|++.+.+.+.+++.+
T Consensus 8 ~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~G~~vi~v~~np~~~~~d~~~ad~~y~ep~~~e~l~~ii~~e~ 82 (1068)
T PRK12815 8 QKILVIGSGPIVIGQAAEFDYSGTQACLALKEEGYQVVLVNPNPATIMTDPAPADTVYFEPLTVEFVKRIIAREK 82 (1068)
T ss_pred CEEEEECCCcchhcchhhhhhHHHHHHHHHHHcCCEEEEEeCCcchhhcCcccCCeeEECCCCHHHHHHHHHHhC
Confidence 578889888763 2 3557888899999998887732 234677788888777654
No 320
>PRK00170 azoreductase; Reviewed
Probab=34.85 E-value=1.7e+02 Score=25.05 Aligned_cols=64 Identities=13% Similarity=0.152 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHhc--CCcEEEEEeeecc-C-CCH------------------------HHHHHHHhCCCeEEEEecCC
Q 020510 249 IVGLSLKAAEILAKE--GISAEVINLRSIR-P-LDR------------------------STINASVRKTNRLVTVEEGF 300 (325)
Q Consensus 249 ~~~~a~~Aa~~L~~~--Gi~~~Vi~~~~l~-P-~d~------------------------~~l~~~~~~~~~vvvvEe~~ 300 (325)
....+..+++.|+++ |.+++++|+.... | ++. +.+.+.++..+.||++=--+
T Consensus 18 s~~l~~~~~~~l~~~~~~~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~i~~AD~iV~~sP~y 97 (201)
T PRK00170 18 SMQLGDAFIEAYKEAHPDDEVTVRDLAAEPIPVLDGEVVGALGKSAETLTPRQQEAVALSDELLEEFLAADKIVIAAPMY 97 (201)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHHHHHHHHCCEEEEeeccc
Confidence 344555667778887 8999999997553 3 221 22345566677766654433
Q ss_pred CCCCHHHHHHHHH
Q 020510 301 PQHGVGAEIWCAF 313 (325)
Q Consensus 301 ~~GGlg~~v~~~l 313 (325)
.+++...+..++
T Consensus 98 -~~~~pa~LK~~i 109 (201)
T PRK00170 98 -NFSIPTQLKAYI 109 (201)
T ss_pred -ccCCcHHHHHHH
Confidence 477777776555
No 321
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=34.83 E-value=83 Score=29.38 Aligned_cols=40 Identities=10% Similarity=0.054 Sum_probs=21.0
Q ss_pred EEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHH
Q 020510 243 ITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRST 282 (325)
Q Consensus 243 Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~ 282 (325)
|+..|..+.++++.++..++.|.++-++-.++..+.+.+.
T Consensus 78 i~gv~~~t~~ai~~a~~a~~~Gadav~~~pP~y~~~s~~~ 117 (296)
T TIGR03249 78 YTGVGGNTSDAIEIARLAEKAGADGYLLLPPYLINGEQEG 117 (296)
T ss_pred EEecCccHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHH
Confidence 3444444555555555555556665555555444444444
No 322
>PRK10329 glutaredoxin-like protein; Provisional
Probab=34.81 E-value=1.9e+02 Score=21.36 Aligned_cols=66 Identities=14% Similarity=0.039 Sum_probs=39.5
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHh-CCC--eEEEEecCCCCCCHH-HHHHHH
Q 020510 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVR-KTN--RLVTVEEGFPQHGVG-AEIWCA 312 (325)
Q Consensus 241 v~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~-~~~--~vvvvEe~~~~GGlg-~~v~~~ 312 (325)
++|.+ -.....+..+.+.|++.||+.+.+|+.. |.+...+... ... .++++++.. ..||. +.+.+.
T Consensus 3 v~lYt-~~~Cp~C~~ak~~L~~~gI~~~~idi~~----~~~~~~~~~~~g~~~vPvv~i~~~~-~~Gf~~~~l~~~ 72 (81)
T PRK10329 3 ITIYT-RNDCVQCHATKRAMESRGFDFEMINVDR----VPEAAETLRAQGFRQLPVVIAGDLS-WSGFRPDMINRL 72 (81)
T ss_pred EEEEe-CCCCHhHHHHHHHHHHCCCceEEEECCC----CHHHHHHHHHcCCCCcCEEEECCEE-EecCCHHHHHHH
Confidence 44444 3555778888889999999999999985 3333222221 222 356666654 45664 344433
No 323
>PRK05802 hypothetical protein; Provisional
Probab=34.75 E-value=1.5e+02 Score=28.14 Aligned_cols=38 Identities=13% Similarity=0.010 Sum_probs=29.0
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhcCCcEEEE-Eeeec
Q 020510 238 GKDVTITAFSKIVGLSLKAAEILAKEGISAEVI-NLRSI 275 (325)
Q Consensus 238 G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi-~~~~l 275 (325)
+.++++||-|+.....+..++.|.+++-++.++ ..++-
T Consensus 172 ~~~~llIaGGiGIaPl~~l~~~l~~~~~~v~li~g~r~~ 210 (320)
T PRK05802 172 NGKSLVIARGIGQAPGVPVIKKLYSNGNKIIVIIDKGPF 210 (320)
T ss_pred CCeEEEEEeEEeHHHHHHHHHHHHHcCCcEEEEEeCCCH
Confidence 357999999999999999999888777566644 34443
No 324
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=34.43 E-value=3.4e+02 Score=27.78 Aligned_cols=110 Identities=15% Similarity=0.051 Sum_probs=60.4
Q ss_pred CCceeechh--hHHHHHHHHHHHhccC-CeeEEecccccH-HHHHHHHHHHHHhhccccCCCCccCCEEEEeC-C-CCCC
Q 020510 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTFNF-SMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N-GAAA 156 (325)
Q Consensus 83 p~R~i~~GI--aE~~~vg~A~GlA~~G-~~p~v~~~~~~f-~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~-G~~~ 156 (325)
|.+|+..+- +=-..+..|.|++++. -++++.+. .+. .+.....+-. +.. .++|++++.. + +...
T Consensus 408 ~~~~~~~~~~g~mG~glpaaiGa~lA~p~~~Vv~i~-GDG~f~m~~~eL~T-a~~--------~~l~i~~vV~NN~~y~~ 477 (566)
T PRK07282 408 ERQLVTSGGLGTMGFGIPAAIGAKIANPDKEVILFV-GDGGFQMTNQELAI-LNI--------YKVPIKVVMLNNHSLGM 477 (566)
T ss_pred CCcEecCCccccccchhhHhheeheecCCCcEEEEE-cchhhhccHHHHHH-HHH--------hCCCeEEEEEeCCCchH
Confidence 778887532 2223556677777663 35555554 442 2222222322 332 4677655532 2 3221
Q ss_pred ----------CCCC-C---cchHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510 157 ----------GVGA-Q---HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 157 ----------g~G~-t---Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir 204 (325)
+.+. . +.-.+..+.+.+ |+.-+.-.++.|+..+++. +..++|.+|-
T Consensus 478 i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~-~~~~~p~lIe 537 (566)
T PRK07282 478 VRQWQESFYEGRTSESVFDTLPDFQLMAQAY-GIKHYKFDNPETLAQDLEV-ITEDVPMLIE 537 (566)
T ss_pred HHHHHHHHhCCCcccccCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHH-hcCCCCEEEE
Confidence 0111 1 111223566666 7788888999999999974 5668899884
No 325
>PRK05939 hypothetical protein; Provisional
Probab=34.16 E-value=1.5e+02 Score=29.08 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=14.0
Q ss_pred CCHHHHHHHHhCCCeEEEEecCC
Q 020510 278 LDRSTINASVRKTNRLVTVEEGF 300 (325)
Q Consensus 278 ~d~~~l~~~~~~~~~vvvvEe~~ 300 (325)
.|.+.|.+.+++++.++++|+-+
T Consensus 148 ~dl~~I~~la~~~gi~livD~t~ 170 (397)
T PRK05939 148 ADLAGIGALCRERGLLYVVDNTM 170 (397)
T ss_pred HhHHHHHHHHHHcCCEEEEECCc
Confidence 56666777776666555555543
No 326
>PRK05569 flavodoxin; Provisional
Probab=34.12 E-value=1.7e+02 Score=23.47 Aligned_cols=30 Identities=10% Similarity=0.053 Sum_probs=19.4
Q ss_pred echhHHHHHHHHHHHHhcCCcEEEEEeeec
Q 020510 246 FSKIVGLSLKAAEILAKEGISAEVINLRSI 275 (325)
Q Consensus 246 ~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l 275 (325)
+|++-..|...++.+++.|++++++++...
T Consensus 12 tGnT~~iA~~i~~~~~~~g~~v~~~~~~~~ 41 (141)
T PRK05569 12 GGNVEVLANTIADGAKEAGAEVTIKHVADA 41 (141)
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEEEECCcC
Confidence 345555666666667667888877776543
No 327
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=33.90 E-value=1.9e+02 Score=27.94 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=16.1
Q ss_pred CCHHHHHHHHhCCCeEEEEecCCCCC
Q 020510 278 LDRSTINASVRKTNRLVTVEEGFPQH 303 (325)
Q Consensus 278 ~d~~~l~~~~~~~~~vvvvEe~~~~G 303 (325)
.|.+.|.+++++++.++++|+-...|
T Consensus 159 ~~~~~I~~l~~~~g~~livD~a~a~g 184 (402)
T TIGR02006 159 QDIAAIGEICRERKVFFHVDAAQSVG 184 (402)
T ss_pred ccHHHHHHHHHHcCCEEEEEcchhcC
Confidence 45667777777766666666655433
No 328
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=33.80 E-value=28 Score=27.90 Aligned_cols=56 Identities=29% Similarity=0.377 Sum_probs=32.8
Q ss_pred EeeeCCcEEEEEech--hHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCCeEE
Q 020510 234 IEREGKDVTITAFSK--IVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLV 294 (325)
Q Consensus 234 vl~~G~dv~Iia~G~--~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~vv 294 (325)
++.++.+++||++|. ++...-+|.+.+++.| ++|+-.+|- --.+.+.++..+ ++|+
T Consensus 57 ~lee~~E~ivvGTG~~G~l~l~~ea~e~~r~k~--~~vi~~pT~--EAikr~nel~~~-krV~ 114 (121)
T COG1504 57 LLEEGPEVIVVGTGQSGMLELSEEAREFFRKKG--CEVIELPTP--EAIKRYNELRGK-KRVA 114 (121)
T ss_pred HHhcCCcEEEEecCceeEEEeCHHHHHHHHhcC--CeEEEeCCH--HHHHHHHHHhcc-ceEE
Confidence 345789999999994 3445556666777765 455545542 222344444434 5654
No 329
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=33.72 E-value=1.2e+02 Score=28.44 Aligned_cols=55 Identities=22% Similarity=0.267 Sum_probs=36.1
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeec----------cCCCHHHHHHHHhCCCeEE
Q 020510 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSI----------RPLDRSTINASVRKTNRLV 294 (325)
Q Consensus 237 ~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l----------~P~d~~~l~~~~~~~~~vv 294 (325)
.|+++.||++|.+... ++..|+..|.++.++|-+.- ++.+.+.+.+.+++.+-|+
T Consensus 151 ~g~kvlViG~G~iG~~---~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI 215 (296)
T PRK08306 151 HGSNVLVLGFGRTGMT---LARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIF 215 (296)
T ss_pred CCCEEEEECCcHHHHH---HHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEE
Confidence 4688999999985544 55566677888888877632 2233445566666665444
No 330
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=33.63 E-value=1.3e+02 Score=28.38 Aligned_cols=99 Identities=23% Similarity=0.232 Sum_probs=52.7
Q ss_pred HHHHHHHh----ccCCeeEEecccccHH---HHHHHHHHHHHhhccccCCCCccCCEEEEeCC---CCCCCC-CCCcc--
Q 020510 97 TGIGVGAA----YYGLKPVVEFMTFNFS---MQAIDHIINSAAKSNYMSSGQISVPIVFRGPN---GAAAGV-GAQHS-- 163 (325)
Q Consensus 97 vg~A~GlA----~~G~~p~v~~~~~~f~---~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~~---G~~~g~-G~tHs-- 163 (325)
+.+|+|.| ..|...++..+..+.. -..+|-+ |-++. .++||+++.-+ +.+... -.+.+
T Consensus 107 ~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~Eal-N~A~~--------~~lPvifvveNN~~aist~~~~~~~~~~ 177 (300)
T PF00676_consen 107 VPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEAL-NLAAL--------WKLPVIFVVENNQYAISTPTEEQTASPD 177 (300)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHH-HHHHH--------TTTSEEEEEEEESEETTEEHHHHCSSST
T ss_pred CccccchhHhhhhcCCceeEEEEecCcccccCccHHHH-HHHhh--------ccCCeEEEEecCCcccccCccccccccc
Confidence 34444444 3465555544445543 2445554 44554 58999988653 332110 00110
Q ss_pred hHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEe
Q 020510 164 HCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLE 205 (325)
Q Consensus 164 ~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~ir~ 205 (325)
...-+..-.+|+++| .-.|+.++...++.|++ .++|++|-.
T Consensus 178 ~~~~a~~~gip~~~V-DG~D~~av~~a~~~A~~~~R~g~gP~lie~ 222 (300)
T PF00676_consen 178 IADRAKGYGIPGIRV-DGNDVEAVYEAAKEAVEYARAGKGPVLIEA 222 (300)
T ss_dssp SGGGGGGTTSEEEEE-ETTSHHHHHHHHHHHHHHHHTTT--EEEEE
T ss_pred hhhhhhccCCcEEEE-CCEeHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 111133335777554 77889998888888876 368999853
No 331
>PRK09004 FMN-binding protein MioC; Provisional
Probab=33.54 E-value=1.3e+02 Score=24.95 Aligned_cols=53 Identities=13% Similarity=0.098 Sum_probs=32.0
Q ss_pred EEechhHHHHHHHHHHH----HhcCCcEEEEEeeeccCCCHHHHHHHHhCCCeEEEEecCCCCCCH
Q 020510 244 TAFSKIVGLSLKAAEIL----AKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGV 305 (325)
Q Consensus 244 ia~G~~~~~a~~Aa~~L----~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGl 305 (325)
|-||+....+.+.|+.| ++.|.++.++++.. .+ .+.+.+.++++--.+-.|-+
T Consensus 6 I~ygS~tGnae~~A~~l~~~~~~~g~~~~~~~~~~-----~~----~l~~~~~li~~~sT~G~Ge~ 62 (146)
T PRK09004 6 LISGSTLGGAEYVADHLAEKLEEAGFSTETLHGPL-----LD----DLSASGLWLIVTSTHGAGDL 62 (146)
T ss_pred EEEEcCchHHHHHHHHHHHHHHHcCCceEEeccCC-----HH----HhccCCeEEEEECCCCCCCC
Confidence 44788877777777655 45588999877532 22 23455666666554434433
No 332
>COG1945 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) [Amino acid transport and metabolism]
Probab=33.39 E-value=28 Score=29.81 Aligned_cols=71 Identities=20% Similarity=0.179 Sum_probs=43.5
Q ss_pred EEEEechhHH-HHHHHHH-HHHhcCC-cEEEEEeeeccCCC------HHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHH
Q 020510 242 TITAFSKIVG-LSLKAAE-ILAKEGI-SAEVINLRSIRPLD------RSTINASVRKTNRLVTVEEGFPQHGVGAEIWCA 312 (325)
Q Consensus 242 ~Iia~G~~~~-~a~~Aa~-~L~~~Gi-~~~Vi~~~~l~P~d------~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~ 312 (325)
+.+++|...+ .=+.+.+ .|.+.|| ++.+|.+.+|-|-. +|.|.+ +....-|.+|.-+....+-|+.|++.
T Consensus 9 vf~t~G~Ge~~t~L~aFd~AL~dAgI~~~NLV~vSSIlPp~~~~V~~e~gl~k-l~pG~iv~~V~Ar~~S~~~G~~isaa 87 (163)
T COG1945 9 VFFTSGVGEGDTELNAFDAALLDAGIENFNLVPVSSILPPNCEIVDPEDGLPK-LPPGAILFCVMARGTSNEPGRTISAA 87 (163)
T ss_pred EEEEeccccCCchhHhHHHHHHhCCCcccceEEEecccCCcccccchhhcCCc-CCCCcEEeEEEeecccCCCCceeeee
Confidence 3455565543 2233333 4667787 79999999999922 233444 44444566677777777777777655
Q ss_pred H
Q 020510 313 F 313 (325)
Q Consensus 313 l 313 (325)
+
T Consensus 88 i 88 (163)
T COG1945 88 I 88 (163)
T ss_pred e
Confidence 5
No 333
>PRK09739 hypothetical protein; Provisional
Probab=33.08 E-value=1.5e+02 Score=25.69 Aligned_cols=64 Identities=13% Similarity=0.060 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEEeeecc--C------------------CCHHHHHHHHhCCCeEEEEecCCCCCCHHHH
Q 020510 249 IVGLSLKAAEILAKEGISAEVINLRSIR--P------------------LDRSTINASVRKTNRLVTVEEGFPQHGVGAE 308 (325)
Q Consensus 249 ~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~--P------------------~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~ 308 (325)
....+...++.+++.|.+++++|+.... | -+.+.+.+.++..+.||+.=--+ .+++-+.
T Consensus 19 s~~l~~~~~~~~~~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~~P~y-~~~~Pa~ 97 (199)
T PRK09739 19 TAKVAEAIHQRAQERGHQVEELDLYRSGFDPVLTPEDEPDWKNPDKRYSPEVHQLYSELLEHDALVFVFPLW-WYSFPAM 97 (199)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEhhhhCCCCCCCHHHhhhhcccCCCCCHHHHHHHHHHHhCCEEEEECchh-hhcchHH
Confidence 3445666677788889999999987642 1 11244556677777766665444 5777777
Q ss_pred HHHHH
Q 020510 309 IWCAF 313 (325)
Q Consensus 309 v~~~l 313 (325)
+..++
T Consensus 98 LK~~i 102 (199)
T PRK09739 98 LKGYI 102 (199)
T ss_pred HHHHH
Confidence 76554
No 334
>PRK07308 flavodoxin; Validated
Probab=33.06 E-value=1.9e+02 Score=23.55 Aligned_cols=30 Identities=13% Similarity=0.108 Sum_probs=20.2
Q ss_pred echhHHHHHHHHHHHHhcCCcEEEEEeeec
Q 020510 246 FSKIVGLSLKAAEILAKEGISAEVINLRSI 275 (325)
Q Consensus 246 ~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l 275 (325)
+|++-..|...++.|++.|+.+++.++...
T Consensus 12 tGnTe~iA~~ia~~l~~~g~~~~~~~~~~~ 41 (146)
T PRK07308 12 TGNTEEIADIVADKLRELGHDVDVDECTTV 41 (146)
T ss_pred CchHHHHHHHHHHHHHhCCCceEEEecccC
Confidence 344445566666677777888888887654
No 335
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=32.96 E-value=2.4e+02 Score=27.38 Aligned_cols=61 Identities=25% Similarity=0.314 Sum_probs=35.0
Q ss_pred ccCCEEEEeCC-CCCCCCCCC-cch----HHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHh---CCCcEEEEe
Q 020510 142 ISVPIVFRGPN-GAAAGVGAQ-HSH----CYAAWYASVPGLKVLSPYSSEDARGLLKAAIR---DPDPVVFLE 205 (325)
Q Consensus 142 ~~~pvv~~~~~-G~~~g~G~t-Hs~----~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~---~~~Pv~ir~ 205 (325)
.++|++++..+ +.. .+.+ ..+ .+......+|++.| .=.|..++...++.+.+ .++|++|-.
T Consensus 187 ~~lPvvfvveNN~~a--ist~~~~~~~~~~~~~~~~~~p~~~V-DG~D~~av~~a~~~A~~~aR~~gP~lIe~ 256 (362)
T PLN02269 187 WDLPVIFVCENNHYG--MGTAEWRAAKSPAYYKRGDYVPGLKV-DGMDVLAVKQACKFAKEHALSNGPIVLEM 256 (362)
T ss_pred cCcCEEEEEeCCCEe--ccCchhhhccchHHHHhhcCCCeEEE-CCCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 58898887654 321 2221 101 11122235777655 66777777777776664 278999854
No 336
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=32.71 E-value=2.1e+02 Score=23.44 Aligned_cols=46 Identities=7% Similarity=0.110 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCC-CeEEEEec
Q 020510 251 GLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKT-NRLVTVEE 298 (325)
Q Consensus 251 ~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~-~~vvvvEe 298 (325)
..+.++++.++++++.+-+|.+. .+.+.+.|.+.++.+ ++.+.+++
T Consensus 116 ~~~~~~~~~~~~~~v~i~~i~~g--~~~~~~~l~~ia~~~~g~~~~~~~ 162 (170)
T cd01465 116 DELARLVAQKRESGITLSTLGFG--DNYNEDLMEAIADAGNGNTAYIDN 162 (170)
T ss_pred HHHHHHHHHhhcCCeEEEEEEeC--CCcCHHHHHHHHhcCCceEEEeCC
Confidence 45566666777788988888887 578888888877654 45566654
No 337
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=32.47 E-value=54 Score=26.45 Aligned_cols=36 Identities=14% Similarity=0.078 Sum_probs=25.5
Q ss_pred cEEEEEechhH-HHHHHHHHHHHhcCCcEEEEEeeec
Q 020510 240 DVTITAFSKIV-GLSLKAAEILAKEGISAEVINLRSI 275 (325)
Q Consensus 240 dv~Iia~G~~~-~~a~~Aa~~L~~~Gi~~~Vi~~~~l 275 (325)
++++..+|+.. ..+.+.++.|+++|.++.|+=-+.-
T Consensus 2 ~i~l~vtGs~~~~~~~~~l~~L~~~g~~v~vv~S~~A 38 (129)
T PF02441_consen 2 RILLGVTGSIAAYKAPDLLRRLKRAGWEVRVVLSPSA 38 (129)
T ss_dssp EEEEEE-SSGGGGGHHHHHHHHHTTTSEEEEEESHHH
T ss_pred EEEEEEECHHHHHHHHHHHHHHhhCCCEEEEEECCcH
Confidence 46677777544 5688999999999999887754443
No 338
>PTZ00089 transketolase; Provisional
Probab=31.69 E-value=3.2e+02 Score=28.87 Aligned_cols=73 Identities=11% Similarity=0.150 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhhccccCCCCccCC-EEEEeCC-CCCCCCCCCc---chHHHHHHhcCCCcEEEeeC----CHHHHHHHHH
Q 020510 122 QAIDHIINSAAKSNYMSSGQISVP-IVFRGPN-GAAAGVGAQH---SHCYAAWYASVPGLKVLSPY----SSEDARGLLK 192 (325)
Q Consensus 122 ra~dqi~~~~a~~~~~~~~~~~~p-vv~~~~~-G~~~g~G~tH---s~~~~a~~~~iP~~~V~~P~----d~~e~~~~l~ 192 (325)
.++|.+.. ++. .+++ ++++..+ +.. -+|.++ .......++++ |+.++.+. |..++..+++
T Consensus 164 ~~~EAl~~-A~~--------~~L~nLi~i~d~N~~~-i~~~~~~~~~~~~~~~f~a~-G~~~i~v~dG~~D~~~l~~a~~ 232 (661)
T PTZ00089 164 VSQEALSL-AGH--------LGLEKLIVLYDDNKIT-IDGNTDLSFTEDVEKKYEAY-GWHVIEVDNGNTDFDGLRKAIE 232 (661)
T ss_pred HHHHHHHH-HHH--------hCCCCEEEEEECCCcc-cccCcccccCccHHHHHHhc-CCcEEEeCCCCCCHHHHHHHHH
Confidence 66777643 443 4665 5454433 322 233333 22334788888 99999984 5667777777
Q ss_pred HhHhC-CCcEEEEe
Q 020510 193 AAIRD-PDPVVFLE 205 (325)
Q Consensus 193 ~a~~~-~~Pv~ir~ 205 (325)
.+.+. ++|++|..
T Consensus 233 ~a~~~~~~P~~I~~ 246 (661)
T PTZ00089 233 EAKKSKGKPKLIIV 246 (661)
T ss_pred HHHhcCCCcEEEEE
Confidence 77664 58999864
No 339
>PLN02651 cysteine desulfurase
Probab=31.61 E-value=2.2e+02 Score=26.97 Aligned_cols=21 Identities=14% Similarity=0.151 Sum_probs=9.6
Q ss_pred CCHHHHHHHHhCCCeEEEEec
Q 020510 278 LDRSTINASVRKTNRLVTVEE 298 (325)
Q Consensus 278 ~d~~~l~~~~~~~~~vvvvEe 298 (325)
.|.+.|.+.+++++.++++|.
T Consensus 155 ~~l~~I~~~~~~~g~~~~vD~ 175 (364)
T PLN02651 155 QPVEEIGELCREKKVLFHTDA 175 (364)
T ss_pred ccHHHHHHHHHHcCCEEEEEc
Confidence 344445555544444444443
No 340
>PTZ00062 glutaredoxin; Provisional
Probab=31.60 E-value=1e+02 Score=27.44 Aligned_cols=74 Identities=14% Similarity=0.139 Sum_probs=44.8
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhC-----CCeEEEEecCCCCCCHHHH
Q 020510 238 GKDVTITAFS----KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRK-----TNRLVTVEEGFPQHGVGAE 308 (325)
Q Consensus 238 G~dv~Iia~G----~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~-----~~~vvvvEe~~~~GGlg~~ 308 (325)
.++++|++-| +....+.++.+.|++.|++...+|+.. |.+ +++.+++ +-..|.+... ..||+...
T Consensus 112 ~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~----d~~-~~~~l~~~sg~~TvPqVfI~G~-~IGG~d~l 185 (204)
T PTZ00062 112 NHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFE----DPD-LREELKVYSNWPTYPQLYVNGE-LIGGHDII 185 (204)
T ss_pred cCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCC----CHH-HHHHHHHHhCCCCCCeEEECCE-EEcChHHH
Confidence 3556666666 346778888899999999999999873 332 3333432 2123556544 36887443
Q ss_pred HHHHHcCCCcc
Q 020510 309 IWCAFFPPAWL 319 (325)
Q Consensus 309 v~~~l~~~~~~ 319 (325)
.. +.++|-+
T Consensus 186 ~~--l~~~G~L 194 (204)
T PTZ00062 186 KE--LYESNSL 194 (204)
T ss_pred HH--HHHcCCh
Confidence 33 5455544
No 341
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=30.99 E-value=1.3e+02 Score=27.19 Aligned_cols=98 Identities=14% Similarity=0.242 Sum_probs=58.8
Q ss_pred HHHhcCCCcEEEee-CCHHHHHHHHHHhHhCCCcEEEEeCccccCcccCccccccCCCcccc-CCceEEeeeCCcEEEEE
Q 020510 168 AWYASVPGLKVLSP-YSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLP-IGKAKIEREGKDVTITA 245 (325)
Q Consensus 168 a~~~~iP~~~V~~P-~d~~e~~~~l~~a~~~~~Pv~ir~~~~l~~~~~p~~~~~~~~~~~~~-~gk~~vl~~G~dv~Iia 245 (325)
.++..+|++.++-- ++.+|++.+++. -.|=.|..+-. +|+.+- ++ +...+--....||.+|+
T Consensus 18 ~yv~~~~gF~~vg~A~~~~ea~~~i~~----~~pDLILLDiY-----------mPd~~G-i~lL~~ir~~~~~~DVI~iT 81 (224)
T COG4565 18 RYVKQIPGFSVVGTAGTLEEAKMIIEE----FKPDLILLDIY-----------MPDGNG-IELLPELRSQHYPVDVIVIT 81 (224)
T ss_pred HHHHhCCCceEEEeeccHHHHHHHHHh----hCCCEEEEeec-----------cCCCcc-HHHHHHHHhcCCCCCEEEEe
Confidence 78899999987754 556677766653 24444443211 111110 00 00011111236899999
Q ss_pred echhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCC
Q 020510 246 FSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKT 290 (325)
Q Consensus 246 ~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~ 290 (325)
.-+-.....+|.. .+|+|-- ||||..+-+.+.+.++
T Consensus 82 AA~d~~tI~~alr--------~Gv~DYL-iKPf~~eRl~~aL~~y 117 (224)
T COG4565 82 AASDMETIKEALR--------YGVVDYL-IKPFTFERLQQALTRY 117 (224)
T ss_pred ccchHHHHHHHHh--------cCchhhe-ecceeHHHHHHHHHHH
Confidence 8777777766533 5788854 8999999888887765
No 342
>PRK02948 cysteine desulfurase; Provisional
Probab=30.91 E-value=2.5e+02 Score=26.62 Aligned_cols=21 Identities=24% Similarity=0.178 Sum_probs=11.8
Q ss_pred CCHHHHHHHHhCCCeEEEEec
Q 020510 278 LDRSTINASVRKTNRLVTVEE 298 (325)
Q Consensus 278 ~d~~~l~~~~~~~~~vvvvEe 298 (325)
.|.+.|.+++++++.++++|+
T Consensus 155 ~~~~~I~~l~~~~~~~vivD~ 175 (381)
T PRK02948 155 QPIAEIGALLKKYNVLFHSDC 175 (381)
T ss_pred hhHHHHHHHHHHcCCEEEEEC
Confidence 445556666666555555554
No 343
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=30.86 E-value=1.1e+02 Score=33.99 Aligned_cols=53 Identities=25% Similarity=0.403 Sum_probs=38.8
Q ss_pred CcEEEEEechhH-H-------HHHHHHHHHHhcCCcEEEEEeee--------------ccCCCHHHHHHHHhCCC
Q 020510 239 KDVTITAFSKIV-G-------LSLKAAEILAKEGISAEVINLRS--------------IRPLDRSTINASVRKTN 291 (325)
Q Consensus 239 ~dv~Iia~G~~~-~-------~a~~Aa~~L~~~Gi~~~Vi~~~~--------------l~P~d~~~l~~~~~~~~ 291 (325)
++++||++|... . -+.++++.|++.|+++-++|..- +-|++.+.+.+.+++.+
T Consensus 7 ~kvlviG~g~~~igq~~e~d~sg~q~~kalke~G~~vi~v~~np~~~~~~~~~aD~~y~~p~~~~~v~~ii~~e~ 81 (1050)
T TIGR01369 7 KKILVIGSGPIVIGQAAEFDYSGSQACKALKEEGYRVILVNSNPATIMTDPEMADKVYIEPLTPEAVEKIIEKER 81 (1050)
T ss_pred cEEEEECCCcchhcchhcccchHHHHHHHHHHcCCEEEEEecchhhccCChhcCCEEEECCCCHHHHHHHHHHhC
Confidence 578888888643 2 24567788888999988887643 34788888888887754
No 344
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=30.65 E-value=5.3e+02 Score=26.44 Aligned_cols=37 Identities=19% Similarity=0.177 Sum_probs=29.6
Q ss_pred HHHHhcCCCcEEEeeCCHHHHHHHHHHhH--hCCCcEEEE
Q 020510 167 AAWYASVPGLKVLSPYSSEDARGLLKAAI--RDPDPVVFL 204 (325)
Q Consensus 167 ~a~~~~iP~~~V~~P~d~~e~~~~l~~a~--~~~~Pv~ir 204 (325)
.++.+++ |+.-..-.+..|+...++.++ +.++|++|-
T Consensus 490 ~~iA~a~-G~~~~~v~~~~el~~al~~a~~~~~~~p~lie 528 (575)
T TIGR02720 490 AKIAEGV-GAVGFRVNKIEQLPAVFEQAKAIKQGKPVLID 528 (575)
T ss_pred HHHHHHC-CCEEEEeCCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 3566665 666677799999999999999 778899884
No 345
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=30.46 E-value=2.2e+02 Score=26.99 Aligned_cols=25 Identities=8% Similarity=0.049 Sum_probs=16.0
Q ss_pred CCCHHHHHHHHhCCCeEEEEecCCC
Q 020510 277 PLDRSTINASVRKTNRLVTVEEGFP 301 (325)
Q Consensus 277 P~d~~~l~~~~~~~~~vvvvEe~~~ 301 (325)
.+|.+.|.+.+++++.++++|+-..
T Consensus 152 ~~~~~~I~~l~~~~g~~vivD~~~~ 176 (379)
T TIGR03402 152 IFPIEEIGEIAKERGALFHTDAVQA 176 (379)
T ss_pred cccHHHHHHHHHHcCCEEEEECccc
Confidence 3566777777777765565655443
No 346
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=30.23 E-value=2e+02 Score=24.33 Aligned_cols=63 Identities=21% Similarity=0.230 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHH-hcCCcEEEEEeeecc-CC---------C--HHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHH
Q 020510 250 VGLSLKAAEILA-KEGISAEVINLRSIR-PL---------D--RSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAF 313 (325)
Q Consensus 250 ~~~a~~Aa~~L~-~~Gi~~~Vi~~~~l~-P~---------d--~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l 313 (325)
...+..+++.+. +.|.+++++|+.-+. |+ + .+.+.+.++..+.||+.---+ .|++...+..++
T Consensus 16 ~~l~~~~~~~l~~~~g~ev~~idL~~~~~~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y-~~s~~~~LKn~l 91 (174)
T TIGR03566 16 LALVEALVAELAARLGISPRTIDLADLAPSLGGALWRSQLPPDAERILQAIESADLLVVGSPVY-RGSYTGLFKHLF 91 (174)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEhhhcChhhccccccCCCCHHHHHHHHHHHHCCEEEEECCcC-cCcCcHHHHHHH
Confidence 344555555555 348999999986652 11 2 234666677777766665544 578877777665
No 347
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=30.12 E-value=54 Score=31.31 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhcCCcEEEEec
Q 020510 40 REALNSALDEEMSADPKVFLMGE 62 (325)
Q Consensus 40 ~~a~~~~L~~l~~~d~~iv~l~~ 62 (325)
...|.++|...+++||||+++++
T Consensus 184 T~sF~~aLraALReDPDVIlvGE 206 (353)
T COG2805 184 TLSFANALRAALREDPDVILVGE 206 (353)
T ss_pred HHHHHHHHHHHhhcCCCEEEEec
Confidence 45689999999999999999985
No 348
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=29.91 E-value=64 Score=23.35 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEE
Q 020510 249 IVGLSLKAAEILAKEGISAEVIN 271 (325)
Q Consensus 249 ~~~~a~~Aa~~L~~~Gi~~~Vi~ 271 (325)
..+.|+++-+.|+++|++++++-
T Consensus 10 st~~a~~~ek~lk~~gi~~~liP 32 (73)
T PF11823_consen 10 STHDAMKAEKLLKKNGIPVRLIP 32 (73)
T ss_pred CHHHHHHHHHHHHHCCCcEEEeC
Confidence 45678899999999999999873
No 349
>cd06067 H2MP_MemB-H2evol Endopeptidases belonging to membrane-bound hydrogen evolving hydrogenase group. In hydrogenase 3 from E coli, the maturation of the large subunit (HycE) requires the cleavage of a C-terminal peptide by the endopeptidase HycI, before the final formation of the [NiFe] metallocenter. HycI protease is a monomer and lacks characteristic signature motifs of serine, zinc, cysteine, or acid proteases and thus its cleavage reaction is not inhibited by conventional inhibitors of serine and metalloproteases. Such hydrogenases as those from Methanosarcina barkeri (EchCE) and Rhodospirillum rubrum (CooLH) also belong to this group of membrane-bound hydrogen evolving hydrogenase. Sequence comparison of the large subunits from related hydrogenase indicates that in contrast to EchE (358 amino acids) and CooH (361 amino acids), the large subunit HycE (569 amino acids) contains an extra carboxy-terminal stretch of 32 amino acids that is cleaved during the maturation process. In
Probab=29.89 E-value=1.9e+02 Score=23.59 Aligned_cols=52 Identities=21% Similarity=0.229 Sum_probs=31.8
Q ss_pred EEEechhH----HHHHHHHHHHHhc-CCcEEEEEeeeccCCCHHHHHHHHh--CCCeEEEEec
Q 020510 243 ITAFSKIV----GLSLKAAEILAKE-GISAEVINLRSIRPLDRSTINASVR--KTNRLVTVEE 298 (325)
Q Consensus 243 Iia~G~~~----~~a~~Aa~~L~~~-Gi~~~Vi~~~~l~P~d~~~l~~~~~--~~~~vvvvEe 298 (325)
|+++|+.+ .....+++.|++. .-+++++|..+. |+ +.+. .++ ++++++++|=
T Consensus 2 VlGiGN~L~~DDgvG~~v~~~L~~~~~~~v~vid~gt~-~~--~~~~-~l~~~~~d~vIiVDA 60 (136)
T cd06067 2 LLGVGNELRGDDGAGPLLAEKLEDLPNPNWLVIDGGTV-PE--NFTG-KIREEKPDLIVIVDA 60 (136)
T ss_pred EEEeCccccccCcHHHHHHHHHHhcCCCCEEEEECCCC-HH--HHHH-HHHhcCCCEEEEEEC
Confidence 56667655 2456677777655 235888888773 33 3222 333 5678888875
No 350
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=29.67 E-value=69 Score=27.59 Aligned_cols=76 Identities=17% Similarity=0.150 Sum_probs=38.7
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeecc--------CCCHHHHHHHHhCCCeEEEEecCCCCCCHH-H
Q 020510 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIR--------PLDRSTINASVRKTNRLVTVEEGFPQHGVG-A 307 (325)
Q Consensus 237 ~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~--------P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg-~ 307 (325)
+++.++||.||+.-+ .-+.-|++.|+++.|-.-..=+ -|....+.+.+++.+-|+.+=-.....-+. +
T Consensus 3 ~~k~IAViGyGsQG~---a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~eAv~~aDvV~~L~PD~~q~~vy~~ 79 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGH---AHALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVAEAVKKADVVMLLLPDEVQPEVYEE 79 (165)
T ss_dssp CTSEEEEES-SHHHH---HHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHHHHHHC-SEEEE-S-HHHHHHHHHH
T ss_pred CCCEEEEECCChHHH---HHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHHHHHhhCCEEEEeCChHHHHHHHHH
Confidence 467899999998832 3345689999988765433210 111123556677777654443222233443 5
Q ss_pred HHHHHHcC
Q 020510 308 EIWCAFFP 315 (325)
Q Consensus 308 ~v~~~l~~ 315 (325)
+|...|.+
T Consensus 80 ~I~p~l~~ 87 (165)
T PF07991_consen 80 EIAPNLKP 87 (165)
T ss_dssp HHHHHS-T
T ss_pred HHHhhCCC
Confidence 56655543
No 351
>PRK13018 cell division protein FtsZ; Provisional
Probab=29.63 E-value=1.8e+02 Score=28.57 Aligned_cols=62 Identities=16% Similarity=0.272 Sum_probs=41.7
Q ss_pred eCCcEEEEEec----hhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHH----------HHHHHHhCCCeEEEEecCCC
Q 020510 237 EGKDVTITAFS----KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRS----------TINASVRKTNRLVTVEEGFP 301 (325)
Q Consensus 237 ~G~dv~Iia~G----~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~----------~l~~~~~~~~~vvvvEe~~~ 301 (325)
++.|.++|+.| +....+-..++.+++.|+ -++.+- ..||..+ .|.++.+..+.++++++...
T Consensus 111 e~~D~vfI~aGLGGGTGSGaapvIa~iake~g~--ltv~vV-t~Pf~~EG~~r~~nA~~gL~~L~e~~D~vividNd~L 186 (378)
T PRK13018 111 KGADLVFVTAGMGGGTGTGAAPVVAEIAKEQGA--LVVGVV-TKPFKFEGRARMQKAEEGIERLREAADTVIVIDNNRL 186 (378)
T ss_pred cCCCEEEEEeeccCcchhhHHHHHHHHHHHcCC--CeEEEE-EcCcccccHhHHHHHHHHHHHHHHhCCEEEEEecHHH
Confidence 57788777654 444555666777777664 344543 4688855 67777777788999988753
No 352
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=29.61 E-value=2.4e+02 Score=26.50 Aligned_cols=24 Identities=8% Similarity=0.051 Sum_probs=14.3
Q ss_pred CCHHHHHHHHhCCCeEEEEecCCC
Q 020510 278 LDRSTINASVRKTNRLVTVEEGFP 301 (325)
Q Consensus 278 ~d~~~l~~~~~~~~~vvvvEe~~~ 301 (325)
.|.+.|.+++++++.++++|+-..
T Consensus 155 ~~~~~I~~l~~~~~~~~ivD~a~~ 178 (353)
T TIGR03235 155 QPIREIAEVLEAHEAFFHVDAAQV 178 (353)
T ss_pred cCHHHHHHHHHHcCCEEEEEchhh
Confidence 455666666666665566665443
No 353
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=29.44 E-value=3.9e+02 Score=24.84 Aligned_cols=64 Identities=20% Similarity=0.229 Sum_probs=43.1
Q ss_pred eCCcEEEEEechh----HHHHHHHHHHHHhcCC-cEEEEEeeec-----------cCCCHHHHHHHHhC-CCeEEEEecC
Q 020510 237 EGKDVTITAFSKI----VGLSLKAAEILAKEGI-SAEVINLRSI-----------RPLDRSTINASVRK-TNRLVTVEEG 299 (325)
Q Consensus 237 ~G~dv~Iia~G~~----~~~a~~Aa~~L~~~Gi-~~~Vi~~~~l-----------~P~d~~~l~~~~~~-~~~vvvvEe~ 299 (325)
.|+|+.|+.+... +-+.+-.++.|++.|. ++.++=++.- .|+..+.+.+++.. .++|+|+|-|
T Consensus 45 ~g~~v~i~~~~~~~~d~l~ell~~~~alr~~ga~~i~~v~PY~~YaRqDr~~~~ge~isak~~a~ll~~~~d~vitvD~H 124 (285)
T PRK00934 45 DGEDVVIISTTYPQDENLVELLLLIDALRDEGAKSITLVIPYLGYARQDKRFKPGEPISARAIAKIISAYYDRIITINIH 124 (285)
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCCeEEEEecCCcccccccccCCCCCccHHHHHHHHHHhcCEEEEEcCC
Confidence 3678988888554 4456667778888876 5666543321 26666766666654 3789999999
Q ss_pred C
Q 020510 300 F 300 (325)
Q Consensus 300 ~ 300 (325)
.
T Consensus 125 ~ 125 (285)
T PRK00934 125 E 125 (285)
T ss_pred h
Confidence 7
No 354
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=29.30 E-value=3e+02 Score=23.96 Aligned_cols=68 Identities=7% Similarity=0.020 Sum_probs=42.2
Q ss_pred echhHHHHHHHHHHHHhc-CCcEEEEEeeeccCCCHHHH---------------HHHHhCCCeEEEEecCCCCCCHHHHH
Q 020510 246 FSKIVGLSLKAAEILAKE-GISAEVINLRSIRPLDRSTI---------------NASVRKTNRLVTVEEGFPQHGVGAEI 309 (325)
Q Consensus 246 ~G~~~~~a~~Aa~~L~~~-Gi~~~Vi~~~~l~P~d~~~l---------------~~~~~~~~~vvvvEe~~~~GGlg~~v 309 (325)
+|.+...|..+++.+++. |.++++++++... +.+.+ .+.+..++.|++-=- ...|.+...+
T Consensus 11 ~G~T~~lA~~ia~g~~~~~g~ev~~~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~GSP-ty~g~~~~~l 87 (197)
T TIGR01755 11 YGHIETMARAVAEGAREVDGAEVVVKRVPETV--PEEVAEKSHGKTDQTAPVATPQELADYDAIIFGTP-TRFGNMASQM 87 (197)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEeccccC--cHHHHHhccCCcccCCccCCHHHHHHCCEEEEEec-ccccCccHHH
Confidence 455667777777778765 9999999986542 22221 123456665554433 3467888777
Q ss_pred HHHHcCC
Q 020510 310 WCAFFPP 316 (325)
Q Consensus 310 ~~~l~~~ 316 (325)
..++...
T Consensus 88 k~fld~~ 94 (197)
T TIGR01755 88 RNFLDQT 94 (197)
T ss_pred HHHHHhc
Confidence 7776543
No 355
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=29.23 E-value=2.9e+02 Score=32.61 Aligned_cols=36 Identities=11% Similarity=0.040 Sum_probs=29.9
Q ss_pred HHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510 168 AWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 168 a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir 204 (325)
.+.+.. |+.-....+++|+..+++++...++|++|-
T Consensus 850 ~lA~a~-G~~~~rV~~~~eL~~aL~~a~~~~~p~lIE 885 (1655)
T PLN02980 850 NLCLAH-GVRHLHVGTKSELEDALFTSQVEQMDCVVE 885 (1655)
T ss_pred HHHHHc-CCceeecCCHHHHHHHHHHhhccCCCEEEE
Confidence 444444 778888899999999999999888999985
No 356
>PRK14012 cysteine desulfurase; Provisional
Probab=29.16 E-value=2.6e+02 Score=26.92 Aligned_cols=14 Identities=21% Similarity=0.266 Sum_probs=6.9
Q ss_pred CCHHHHHHHHhCCC
Q 020510 278 LDRSTINASVRKTN 291 (325)
Q Consensus 278 ~d~~~l~~~~~~~~ 291 (325)
.|.+.|.+.+++++
T Consensus 161 ~~~~~I~~la~~~g 174 (404)
T PRK14012 161 QDIAAIGEICRERG 174 (404)
T ss_pred hhHHHHHHHHHHcC
Confidence 34455555555444
No 357
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=29.12 E-value=1.3e+02 Score=25.77 Aligned_cols=43 Identities=14% Similarity=0.033 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCCeEEEEe
Q 020510 252 LSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVE 297 (325)
Q Consensus 252 ~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvE 297 (325)
...++++.+++.||.+-.|-+.. .+.+.|.+.....+..+.++
T Consensus 128 ~~~~~~~~~~~~gi~i~~vgig~---~~~~~L~~IA~~~~~~~~~~ 170 (186)
T cd01480 128 GIEKAVNEADHLGIKIFFVAVGS---QNEEPLSRIACDGKSALYRE 170 (186)
T ss_pred hHHHHHHHHHHCCCEEEEEecCc---cchHHHHHHHcCCcchhhhc
Confidence 44567788888898887777654 68888877665544334333
No 358
>PRK05568 flavodoxin; Provisional
Probab=29.02 E-value=1.4e+02 Score=24.10 Aligned_cols=30 Identities=13% Similarity=0.176 Sum_probs=19.5
Q ss_pred chhHHHHHHHHHHHHhcCCcEEEEEeeecc
Q 020510 247 SKIVGLSLKAAEILAKEGISAEVINLRSIR 276 (325)
Q Consensus 247 G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~ 276 (325)
|.+-..|...++.+++.|++++++++....
T Consensus 13 GnT~~~a~~i~~~~~~~g~~v~~~~~~~~~ 42 (142)
T PRK05568 13 GNTEAMANLIAEGAKENGAEVKLLNVSEAS 42 (142)
T ss_pred chHHHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 344445555555666678999998887643
No 359
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=28.68 E-value=1.6e+02 Score=29.08 Aligned_cols=57 Identities=18% Similarity=0.242 Sum_probs=38.1
Q ss_pred CcEEEEEech-hHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHh-CCCeEEEEec
Q 020510 239 KDVTITAFSK-IVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVR-KTNRLVTVEE 298 (325)
Q Consensus 239 ~dv~Iia~G~-~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~-~~~~vvvvEe 298 (325)
.|+.|+..+. ....|++.++.|+++|+.+++ +... +.+ .+.+..+-+ +...++++.+
T Consensus 326 ~~v~v~~~~~~~~~~a~~ia~~LR~~Gi~vei-d~~~-~~l-~k~~k~A~~~~~~~viiiG~ 384 (430)
T CHL00201 326 IDVYIATQGLKAQKKGWEIIQFLEKQNIKFEL-DLSS-SNF-HKQIKQAGKKRAKACIILGD 384 (430)
T ss_pred CCEEEEEcCHHHHHHHHHHHHHHHhCCCeEEE-eeCC-CCH-HHHHHHHHHcCCCEEEEEec
Confidence 4678887665 457899999999999999887 4433 334 344554333 2346777765
No 360
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=28.58 E-value=1.3e+02 Score=22.18 Aligned_cols=56 Identities=14% Similarity=0.195 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHh--CCCeEEEEecCCCCCC
Q 020510 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVR--KTNRLVTVEEGFPQHG 304 (325)
Q Consensus 248 ~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~--~~~~vvvvEe~~~~GG 304 (325)
+....+.+|.+.|.++|++...+++..-.+-..+...+... .+-.+|++++.. .||
T Consensus 9 ~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~-igg 66 (80)
T COG0695 9 PGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKH-VGG 66 (80)
T ss_pred CCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEE-EeC
Confidence 34677888889999999999999998765422222222332 223468888854 344
No 361
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=28.38 E-value=4.4e+02 Score=25.14 Aligned_cols=64 Identities=14% Similarity=0.145 Sum_probs=45.6
Q ss_pred eCCcEEEEEech-----hHHHHHHHHHHHHhcCC-cEEEEEeeec-----------cCCCHHHHHHHHhC--CCeEEEEe
Q 020510 237 EGKDVTITAFSK-----IVGLSLKAAEILAKEGI-SAEVINLRSI-----------RPLDRSTINASVRK--TNRLVTVE 297 (325)
Q Consensus 237 ~G~dv~Iia~G~-----~~~~a~~Aa~~L~~~Gi-~~~Vi~~~~l-----------~P~d~~~l~~~~~~--~~~vvvvE 297 (325)
.|+|+.||.+.. .+-+.+-.++.|++.|. ++.++=++.- -|+....+.+++.. .++|+++|
T Consensus 55 ~g~dV~ii~s~~~~~nd~l~eLll~~~alr~~~a~~i~lViPYl~YaRQDr~~~~ge~isak~~a~lL~~~g~d~vitvD 134 (323)
T PRK02458 55 RGDDIYIIQSTSFPVNDHLWELLIMIDACKRASANTVNVVLPYFGYARQDRIAKPREPITAKLVANMLVKAGVDRVLTLD 134 (323)
T ss_pred CCCeEEEEecCCCCCchHHHHHHHHHHHHHHcCCceEEEEEeccccchhhcccCCCCCchHHHHHHHHhhcCCCeEEEEe
Confidence 367898888752 24566677788888876 4666655432 16777778888875 57899999
Q ss_pred cCC
Q 020510 298 EGF 300 (325)
Q Consensus 298 e~~ 300 (325)
-|.
T Consensus 135 ~H~ 137 (323)
T PRK02458 135 LHA 137 (323)
T ss_pred cCc
Confidence 996
No 362
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.32 E-value=1.6e+02 Score=27.71 Aligned_cols=48 Identities=23% Similarity=0.449 Sum_probs=28.8
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCCe
Q 020510 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNR 292 (325)
Q Consensus 237 ~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~ 292 (325)
+|++++||+.|..+..-+ +..|.++|..+.+.+-++ ..+.+.+++.+-
T Consensus 157 ~Gk~vvVIGrs~~VG~pl--a~lL~~~gatVtv~~s~t------~~l~~~~~~ADI 204 (286)
T PRK14175 157 EGKNAVVIGRSHIVGQPV--SKLLLQKNASVTILHSRS------KDMASYLKDADV 204 (286)
T ss_pred CCCEEEEECCCchhHHHH--HHHHHHCCCeEEEEeCCc------hhHHHHHhhCCE
Confidence 467788887777665543 455666677777776554 234445555543
No 363
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=28.28 E-value=42 Score=26.18 Aligned_cols=65 Identities=14% Similarity=0.093 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhcCCcEEEEEeeeccCCCHH-----------HHHHHHhCCCeEEEEecCCCCCCH-HHHHHHHHcCC
Q 020510 252 LSLKAAEILAKEGISAEVINLRSIRPLDRS-----------TINASVRKTNRLVTVEEGFPQHGV-GAEIWCAFFPP 316 (325)
Q Consensus 252 ~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~-----------~l~~~~~~~~~vvvvEe~~~~GGl-g~~v~~~l~~~ 316 (325)
.+++.++.|++.|.++.+.|+..-.-...+ .+.+.++....||+.-+|.....+ .+.++..+...
T Consensus 18 p~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~~f~~l~~~~~~~~~~~~ 94 (106)
T PF03720_consen 18 PALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHDEFRELDWEEIAKLMRKP 94 (106)
T ss_dssp HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--GGGGCCGHHHHHHHSCSS
T ss_pred HHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCHHHhccCHHHHHHhcCCC
Confidence 577888999999999999997643211111 235667777888888888866654 34555555333
No 364
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=27.96 E-value=4.1e+02 Score=25.06 Aligned_cols=64 Identities=16% Similarity=0.140 Sum_probs=45.0
Q ss_pred eCCcEEEEEec-----hhHHHHHHHHHHHHhcCCc-EEEEEeeec-----------cCCCHHHHHHHHhC--CCeEEEEe
Q 020510 237 EGKDVTITAFS-----KIVGLSLKAAEILAKEGIS-AEVINLRSI-----------RPLDRSTINASVRK--TNRLVTVE 297 (325)
Q Consensus 237 ~G~dv~Iia~G-----~~~~~a~~Aa~~L~~~Gi~-~~Vi~~~~l-----------~P~d~~~l~~~~~~--~~~vvvvE 297 (325)
.|+|+.|+.+. ..+-+.+-.++.|++.|.+ +.++=++.- -|+..+.+.+++.. .++|+|+|
T Consensus 46 ~g~~V~ii~s~~~~~nd~l~eLll~~~alr~~ga~~i~lViPYl~YsRQDr~~~~ge~isak~~a~lL~~~g~d~vitvD 125 (309)
T PRK01259 46 RGKDVFIIQSTCAPTNDNLMELLIMIDALKRASAGRITAVIPYFGYARQDRKARSRVPITAKLVANLLETAGADRVLTMD 125 (309)
T ss_pred CCCEEEEECCCCCCCcHHHHHHHHHHHHHHHcCCceEEEEeeccccchhhhhhccCCCchHHHHHHHHhhcCCCEEEEEc
Confidence 46889999774 2355666777888888764 666654322 26667777777776 57899999
Q ss_pred cCC
Q 020510 298 EGF 300 (325)
Q Consensus 298 e~~ 300 (325)
-|.
T Consensus 126 ~H~ 128 (309)
T PRK01259 126 LHA 128 (309)
T ss_pred CCh
Confidence 997
No 365
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=27.93 E-value=2.2e+02 Score=22.57 Aligned_cols=30 Identities=13% Similarity=0.192 Sum_probs=18.4
Q ss_pred chhHHHHHHHHHHHHhcCCcEEEEEeeecc
Q 020510 247 SKIVGLSLKAAEILAKEGISAEVINLRSIR 276 (325)
Q Consensus 247 G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~ 276 (325)
|.+-..|...++.|++.|+++.++++....
T Consensus 10 GnT~~~A~~i~~~~~~~g~~v~~~~~~~~~ 39 (140)
T TIGR01753 10 GNTEEMANIIAEGLKEAGAEVDLLEVADAD 39 (140)
T ss_pred cHHHHHHHHHHHHHHhcCCeEEEEEcccCC
Confidence 333344444455555668889888876653
No 366
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=27.76 E-value=2.3e+02 Score=27.72 Aligned_cols=83 Identities=22% Similarity=0.215 Sum_probs=52.0
Q ss_pred HHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEEeCc-cccCcccCccccccCCCccccCCceE---EeeeCCcEEEE
Q 020510 169 WYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENE-LLYGESFPVSAEVLDSSFCLPIGKAK---IEREGKDVTIT 244 (325)
Q Consensus 169 ~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir~~~-~l~~~~~p~~~~~~~~~~~~~~gk~~---vl~~G~dv~Ii 244 (325)
..+..|. .|+.|.+.+|+..++++|.+++-|++.|-.. .+.+...| .....+.+.+.+ -+...+..+.+
T Consensus 27 ~~~~~p~-~v~~p~s~~eV~~iv~~a~~~~~~v~prG~gts~~g~~~~------~~gvvl~l~~mn~i~~id~~~~~~~v 99 (459)
T COG0277 27 VYRGLPL-AVVFPKSEEEVAAILRLANENGIPVVPRGGGTSLSGGAVP------DGGVVLDLSRLNRILEIDPEDGTATV 99 (459)
T ss_pred hhcCCCC-EEEccCCHHHHHHHHHHHHHcCCeEEEECCCCCccccccC------CCcEEEEchhhcchhccCcCCCEEEE
Confidence 4445565 7999999999999999999999999987432 22221111 101112222222 12334567777
Q ss_pred EechhHHHHHHHHH
Q 020510 245 AFSKIVGLSLKAAE 258 (325)
Q Consensus 245 a~G~~~~~a~~Aa~ 258 (325)
-.|.......++++
T Consensus 100 ~aGv~l~~l~~~l~ 113 (459)
T COG0277 100 QAGVTLEDLEKALA 113 (459)
T ss_pred cCCccHHHHHHHHH
Confidence 88988888877655
No 367
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=27.55 E-value=1.2e+02 Score=21.08 Aligned_cols=62 Identities=5% Similarity=-0.070 Sum_probs=32.1
Q ss_pred HHHHHHHHHhcCCcEEEEEeeeccCC-CHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcC
Q 020510 253 SLKAAEILAKEGISAEVINLRSIRPL-DRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFP 315 (325)
Q Consensus 253 a~~Aa~~L~~~Gi~~~Vi~~~~l~P~-d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~ 315 (325)
+.++.-.|++.|++.+++.+..-+.- ..+.+.+ +...++|=+++++...=.=+..|+++|.+
T Consensus 12 ~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~-~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 12 CRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLK-LNPQHTVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred HHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHh-hCcCCCCCEEEECCEEEEcHHHHHHHHhC
Confidence 44555667788999888877643321 1233433 44455554443321110124566776643
No 368
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=27.45 E-value=1.6e+02 Score=23.20 Aligned_cols=49 Identities=18% Similarity=0.159 Sum_probs=34.3
Q ss_pred CcEEEEEechhHHHHHHHHHHH-HhcCCcEEEEEeeeccC--CCHHHHHHHHhC
Q 020510 239 KDVTITAFSKIVGLSLKAAEIL-AKEGISAEVINLRSIRP--LDRSTINASVRK 289 (325)
Q Consensus 239 ~dv~Iia~G~~~~~a~~Aa~~L-~~~Gi~~~Vi~~~~l~P--~d~~~l~~~~~~ 289 (325)
.|+++ .|+.+..-++-.+.+ ++.|+.+.+||..--.| +|.+.+.+.++.
T Consensus 51 ~DvIl--l~PQi~~~~~~i~~~~~~~~ipv~~I~~~~Y~~~~~~~~~~~~~~~~ 102 (104)
T PRK09590 51 YDLYL--VSPQTKMYFKQFEEAGAKVGKPVVQIPPQAYIPIPMGIEKMAKLILE 102 (104)
T ss_pred CCEEE--EChHHHHHHHHHHHHhhhcCCCEEEeCHHHcCCCccCHHHHHHHHHh
Confidence 46544 576776555555544 45699999999998886 888887776653
No 369
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=27.35 E-value=5.6e+02 Score=24.53 Aligned_cols=116 Identities=11% Similarity=0.086 Sum_probs=67.5
Q ss_pred HHHhcCCCcEEEeeCCHHHHHHHHHHhHhCC-CcEEEEeCccccCcccCccccccCCCccccCCceEEeeeCCcEEEEEe
Q 020510 168 AWYASVPGLKVLSPYSSEDARGLLKAAIRDP-DPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAF 246 (325)
Q Consensus 168 a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~-~Pv~ir~~~~l~~~~~p~~~~~~~~~~~~~~gk~~vl~~G~dv~Iia~ 246 (325)
.++..-.+|.++.-+...++..-+-..+..+ .++-+. ++| +......+. .. -.|+|+.||.+
T Consensus 14 ~~~~~~~~~~i~~g~~~~~la~~ia~~lg~~l~~~~~~--------~Fp------DGE~~v~i~-~~--vrg~~V~ivqs 76 (330)
T PRK02812 14 PLLSDNNRLRLFSGSSNPALAQEVARYLGMDLGPMIRK--------RFA------DGELYVQIQ-ES--IRGCDVYLIQP 76 (330)
T ss_pred ccccCCCCEEEEECCCCHHHHHHHHHHhCCCceeeEEE--------ECC------CCCEEEEeC-CC--CCCCEEEEECC
Confidence 3445555778888666666665555544422 122111 121 111111111 00 13689999998
Q ss_pred ch-----hHHHHHHHHHHHHhcCC-cEEEEEeeecc-----------CCCHHHHHHHHhC--CCeEEEEecCC
Q 020510 247 SK-----IVGLSLKAAEILAKEGI-SAEVINLRSIR-----------PLDRSTINASVRK--TNRLVTVEEGF 300 (325)
Q Consensus 247 G~-----~~~~a~~Aa~~L~~~Gi-~~~Vi~~~~l~-----------P~d~~~l~~~~~~--~~~vvvvEe~~ 300 (325)
.. .+-+.+-.++.|++.|. ++.+|=++.-+ |+..+.+.+++.. .++|+++|-|.
T Consensus 77 ~~~p~nd~l~eLll~~~alr~~ga~ri~~ViPYl~YaRQDr~~~~~e~isak~vA~lL~~~g~d~vitvDlH~ 149 (330)
T PRK02812 77 TCAPVNDHLMELLIMVDACRRASARQITAVIPYYGYARADRKTAGRESITAKLVANLITKAGADRVLAMDLHS 149 (330)
T ss_pred CCCCccHHHHHHHHHHHHHHHhCCceEEEEEecccccccccccCCCCCchHHHHHHHHHhcCCCEEEEEECCc
Confidence 53 34566677788888776 46776554321 6777778888875 56899999997
No 370
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=27.16 E-value=1.1e+02 Score=34.08 Aligned_cols=53 Identities=25% Similarity=0.381 Sum_probs=38.6
Q ss_pred CcEEEEEechhH-HH-------HHHHHHHHHhcCCcEEEEEee--------------eccCCCHHHHHHHHhCCC
Q 020510 239 KDVTITAFSKIV-GL-------SLKAAEILAKEGISAEVINLR--------------SIRPLDRSTINASVRKTN 291 (325)
Q Consensus 239 ~dv~Iia~G~~~-~~-------a~~Aa~~L~~~Gi~~~Vi~~~--------------~l~P~d~~~l~~~~~~~~ 291 (325)
++|.|++.|... .+ +..+++.|+++|+++-++|.. .+.|++.+.+.+.+++.+
T Consensus 8 ~kvLiig~G~~~igq~~e~d~sg~~~~~aLke~G~~vi~v~~~p~~~~~~~~~aD~~y~~p~~~e~l~~ii~~e~ 82 (1066)
T PRK05294 8 KKILIIGSGPIVIGQACEFDYSGTQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEPITPEFVEKIIEKER 82 (1066)
T ss_pred CEEEEECCchhhhcccccccchHHHHHHHHHHcCCEEEEEcCCcccccCCcccCCEEEECCCCHHHHHHHHHHHC
Confidence 578899888753 33 345788899999998888742 245788888888887653
No 371
>PRK13685 hypothetical protein; Provisional
Probab=27.10 E-value=1.1e+02 Score=28.97 Aligned_cols=46 Identities=15% Similarity=0.299 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCCcEEEEEeeec------------cCCCHHHHHHHHhCCC-eEEEEec
Q 020510 253 SLKAAEILAKEGISAEVINLRSI------------RPLDRSTINASVRKTN-RLVTVEE 298 (325)
Q Consensus 253 a~~Aa~~L~~~Gi~~~Vi~~~~l------------~P~d~~~l~~~~~~~~-~vvvvEe 298 (325)
..++++.+++.||.+.+|-+.+- .++|.+.+.+.++.++ +.+.+++
T Consensus 217 ~~~aa~~a~~~gi~i~~Ig~G~~~g~~~~~g~~~~~~~d~~~L~~iA~~tgG~~~~~~~ 275 (326)
T PRK13685 217 AYTAARTAKDQGVPISTISFGTPYGSVEINGQRQPVPVDDESLKKIAQLSGGEFYTAAS 275 (326)
T ss_pred HHHHHHHHHHcCCeEEEEEECCCCCCcCcCCceeeecCCHHHHHHHHHhcCCEEEEcCC
Confidence 35667777788999888888763 2578999999888886 4555544
No 372
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=26.77 E-value=2.4e+02 Score=23.39 Aligned_cols=76 Identities=14% Similarity=0.149 Sum_probs=39.7
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhcCCc-EEEEEeeeccCCCHH----HHHHHHhCCC-eEEEEecCCCCCCHHHHHHH
Q 020510 238 GKDVTITAFSKIVGLSLKAAEILAKEGIS-AEVINLRSIRPLDRS----TINASVRKTN-RLVTVEEGFPQHGVGAEIWC 311 (325)
Q Consensus 238 G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~-~~Vi~~~~l~P~d~~----~l~~~~~~~~-~vvvvEe~~~~GGlg~~v~~ 311 (325)
|.+++.+..|..-..+....+.|.+.|.+ +-+++-..+..++.+ .|.+.+++.+ .+|++-.......++..++.
T Consensus 32 g~~v~av~~G~~~~~~~~l~~~l~~~G~d~v~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~lVl~~~t~~g~~la~~lA~ 111 (164)
T PF01012_consen 32 GGEVTAVVLGPAEEAAEALRKALAKYGADKVYHIDDPALAEYDPEAYADALAELIKEEGPDLVLFGSTSFGRDLAPRLAA 111 (164)
T ss_dssp TSEEEEEEEETCCCHHHHHHHHHHSTTESEEEEEE-GGGTTC-HHHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHH
T ss_pred CCeEEEEEEecchhhHHHHhhhhhhcCCcEEEEecCccccccCHHHHHHHHHHHHHhcCCCEEEEcCcCCCCcHHHHHHH
Confidence 45788888883222222223345556763 666666666666655 4555565532 45656554433345555555
Q ss_pred HH
Q 020510 312 AF 313 (325)
Q Consensus 312 ~l 313 (325)
.|
T Consensus 112 ~L 113 (164)
T PF01012_consen 112 RL 113 (164)
T ss_dssp HH
T ss_pred Hh
Confidence 55
No 373
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=26.52 E-value=75 Score=27.37 Aligned_cols=59 Identities=10% Similarity=0.137 Sum_probs=37.0
Q ss_pred chhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHH
Q 020510 247 SKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAF 313 (325)
Q Consensus 247 G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l 313 (325)
|.+-..|...|..|+|.|+.|++.|+..+.-++ ++++.+||+ --....|-+-+.+-+.+
T Consensus 12 GqT~kIA~~iA~~L~e~g~qvdi~dl~~~~~~~-------l~~ydavVI-gAsI~~~h~~~~~~~Fv 70 (175)
T COG4635 12 GQTRKIAEYIASHLRESGIQVDIQDLHAVEEPA-------LEDYDAVVI-GASIRYGHFHEAVQSFV 70 (175)
T ss_pred CcHHHHHHHHHHHhhhcCCeeeeeehhhhhccC-------hhhCceEEE-ecchhhhhhHHHHHHHH
Confidence 455667777777889999999999998776443 334555443 33344444444444333
No 374
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=26.48 E-value=5.5e+02 Score=24.16 Aligned_cols=64 Identities=8% Similarity=0.014 Sum_probs=45.5
Q ss_pred eCCcEEEEEech-----hHHHHHHHHHHHHhcCCc-EEEEEeeec-----------cCCCHHHHHHHHhC--CCeEEEEe
Q 020510 237 EGKDVTITAFSK-----IVGLSLKAAEILAKEGIS-AEVINLRSI-----------RPLDRSTINASVRK--TNRLVTVE 297 (325)
Q Consensus 237 ~G~dv~Iia~G~-----~~~~a~~Aa~~L~~~Gi~-~~Vi~~~~l-----------~P~d~~~l~~~~~~--~~~vvvvE 297 (325)
.|+|+.||.+.. .+-+.+-.++.|++.|.+ +.++=++.- -|+..+.+.+++.. .++|+++|
T Consensus 37 ~g~~V~iv~s~~~p~nd~l~eLl~~~~a~r~~~a~~i~~ViPYl~YsRQDr~~~~~e~isak~va~lL~~~g~d~vi~vD 116 (302)
T PLN02369 37 RGCDVFLVQPTCPPANENLMELLIMIDACRRASAKRITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACD 116 (302)
T ss_pred CCCeEEEEecCCCCcchHHHHHHHHHHHHHHcCCCeEEEEeecccccccccccCCCCCchHHHHHHHHHhcCCCEEEEEE
Confidence 368999999854 345666777888887764 556554322 26777778888875 47899999
Q ss_pred cCC
Q 020510 298 EGF 300 (325)
Q Consensus 298 e~~ 300 (325)
-|.
T Consensus 117 lHs 119 (302)
T PLN02369 117 LHS 119 (302)
T ss_pred CCc
Confidence 997
No 375
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=26.44 E-value=3.1e+02 Score=27.77 Aligned_cols=87 Identities=22% Similarity=0.175 Sum_probs=51.6
Q ss_pred HhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEEeCcc-ccCcccCccccccCCCcccc---CCceEEeeeCCcEEEEE
Q 020510 170 YASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENEL-LYGESFPVSAEVLDSSFCLP---IGKAKIEREGKDVTITA 245 (325)
Q Consensus 170 ~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir~~~~-l~~~~~p~~~~~~~~~~~~~---~gk~~vl~~G~dv~Iia 245 (325)
.+..| ..|+.|.+.+|+..+++.|.+++-|++.|-... +.+...|. .....+. +.+...+.+....+.+-
T Consensus 52 ~~~~p-~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rG~Gt~~~gg~~~~-----~~gividl~~ln~I~~id~~~~~v~Ve 125 (499)
T PRK11230 52 YRTRP-LLVVLPKQMEQVQALLAVCHRLRVPVVARGAGTGLSGGALPL-----EKGVLLVMARFNRILDINPVGRRARVQ 125 (499)
T ss_pred cCCCC-CEEEeeCCHHHHHHHHHHHHHcCCeEEEECCCcCcCCCcccC-----CCcEEEEcccCCCceEEcCCCCEEEEc
Confidence 45556 468889999999999999999999999874321 11111111 0111111 22222223344567778
Q ss_pred echhHHHHHHHHHHHHhcCC
Q 020510 246 FSKIVGLSLKAAEILAKEGI 265 (325)
Q Consensus 246 ~G~~~~~a~~Aa~~L~~~Gi 265 (325)
.|.......++ |++.|.
T Consensus 126 aGv~~~~L~~~---l~~~Gl 142 (499)
T PRK11230 126 PGVRNLAISQA---AAPHGL 142 (499)
T ss_pred CCccHHHHHHH---HHHcCC
Confidence 88888776654 555665
No 376
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=26.44 E-value=1.8e+02 Score=24.51 Aligned_cols=46 Identities=33% Similarity=0.377 Sum_probs=34.1
Q ss_pred HHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCC-eEEEEecCC
Q 020510 254 LKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN-RLVTVEEGF 300 (325)
Q Consensus 254 ~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~-~vvvvEe~~ 300 (325)
.++++.|++.|+.+-+|+... .+++.+.+.++++.++ +.+.+++-.
T Consensus 122 ~~~~~~l~~~gi~v~~I~~~~-~~~~~~~l~~iA~~tgG~~~~~~d~~ 168 (178)
T cd01451 122 LAAARKLRARGISALVIDTEG-RPVRRGLAKDLARALGGQYVRLPDLS 168 (178)
T ss_pred HHHHHHHHhcCCcEEEEeCCC-CccCccHHHHHHHHcCCeEEEcCcCC
Confidence 777888999999998887654 3457778888887764 567776644
No 377
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=26.23 E-value=3.4e+02 Score=25.65 Aligned_cols=32 Identities=25% Similarity=0.351 Sum_probs=17.1
Q ss_pred cCCcEEEEEeeeccCCCHHHHHHHHhCCCeEE
Q 020510 263 EGISAEVINLRSIRPLDRSTINASVRKTNRLV 294 (325)
Q Consensus 263 ~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~vv 294 (325)
.|+++.++....=..+|.+.+.+.+++..++|
T Consensus 112 ~g~~v~~i~~~~~~~~~~~~~~~~l~~~~~lv 143 (371)
T PF00266_consen 112 KGAEVRVIPADPGGSLDLEDLEEALNPDTRLV 143 (371)
T ss_dssp TTEEEEEEEEGTTSSCSHHHHHHHHHTTESEE
T ss_pred chhhhccccccccchhhhhhhhhhhccccceE
Confidence 45666666555444556666655555333333
No 378
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=26.18 E-value=3e+02 Score=26.45 Aligned_cols=63 Identities=19% Similarity=0.223 Sum_probs=31.9
Q ss_pred ccCCEEEEeCC-CCCCCC---CCCcchHHHHHH--hcCCCcEEEeeCCHHHHHH----HHHHhHhCCCcEEEEe
Q 020510 142 ISVPIVFRGPN-GAAAGV---GAQHSHCYAAWY--ASVPGLKVLSPYSSEDARG----LLKAAIRDPDPVVFLE 205 (325)
Q Consensus 142 ~~~pvv~~~~~-G~~~g~---G~tHs~~~~a~~--~~iP~~~V~~P~d~~e~~~----~l~~a~~~~~Pv~ir~ 205 (325)
.++|++++.-+ +...+. ..+....+.... -.+|++.| .=.|..++.. +++.+.+.++|++|-.
T Consensus 184 ~~LPvifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~~~~~V-dg~d~~av~~a~~~A~~~ar~~~gP~lIev 256 (341)
T CHL00149 184 WKLPIIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEV-DGMDVLAVREVAKEAVERARQGDGPTLIEA 256 (341)
T ss_pred cCCCEEEEEEeCCeeeecchhheeCCccHHHHHHhCCCCEEEE-eCCCHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 58898887643 321111 011111122222 25787766 3345555554 4445545678999854
No 379
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=26.17 E-value=5.4e+02 Score=26.18 Aligned_cols=140 Identities=9% Similarity=0.057 Sum_probs=71.1
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHH----HHHHHHhcc-CCeeEEecccc
Q 020510 43 LNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFT----GIGVGAAYY-GLKPVVEFMTF 117 (325)
Q Consensus 43 ~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~v----g~A~GlA~~-G~~p~v~~~~~ 117 (325)
+-+.|.+.+.++.+.+ +..|.+.. .+.. ..+ . |.+|+..+ -.+.+ ..|.|++++ +.++++ +. .
T Consensus 361 ~~~~l~~~l~~~~~~i-i~~D~G~~--~~~~-~~~---~-~~~~~~~~--~~g~mG~glpaaiGa~lA~~~r~v~-i~-G 428 (535)
T TIGR03394 361 IARAVNDRFARHGQMP-LAADIGDC--LFTA-MDM---D-DAGLMAPG--YYAGMGFGVPAGIGAQCTSGKRILT-LV-G 428 (535)
T ss_pred HHHHHHHHhCCCCCEE-EEEccCHH--HHHH-Hhc---C-CCcEECcC--ccchhhhHHHHHHHHHhCCCCCeEE-EE-e
Confidence 5566777776554432 33455431 1211 112 2 56777643 22344 455555555 456644 44 4
Q ss_pred cH-HHHHHHHHHHHHhhccccCCCCccCCEEEEeC-C-CCCCC---CC-C----CcchHHHHHHhcCCCcEEEeeCCHHH
Q 020510 118 NF-SMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N-GAAAG---VG-A----QHSHCYAAWYASVPGLKVLSPYSSED 186 (325)
Q Consensus 118 ~f-~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~-G~~~g---~G-~----tHs~~~~a~~~~iP~~~V~~P~d~~e 186 (325)
+. .+.....|-. +.. .++|++++.. + +...- .. . .+...+..+.+.+ |..-+...++.|
T Consensus 429 DG~f~m~~~EL~T-a~r--------~~lpv~~vV~NN~~y~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~e 498 (535)
T TIGR03394 429 DGAFQMTGWELGN-CRR--------LGIDPIVILFNNASWEMLRVFQPESAFNDLDDWRFADMAAGM-GGDGVRVRTRAE 498 (535)
T ss_pred ChHHHhHHHHHHH-HHH--------cCCCcEEEEEECCccceeehhccCCCcccCCCCCHHHHHHHc-CCCceEeCCHHH
Confidence 43 3444444543 343 4677665542 2 32211 00 0 1111223455554 556677788999
Q ss_pred HHHHHHHhHhCCC-cEEEE
Q 020510 187 ARGLLKAAIRDPD-PVVFL 204 (325)
Q Consensus 187 ~~~~l~~a~~~~~-Pv~ir 204 (325)
+...++.+++.++ |.+|-
T Consensus 499 L~~al~~a~~~~~~p~lIe 517 (535)
T TIGR03394 499 LAAALDKAFATRGRFQLIE 517 (535)
T ss_pred HHHHHHHHHhcCCCeEEEE
Confidence 9999999998655 76664
No 380
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=26.14 E-value=2e+02 Score=26.50 Aligned_cols=42 Identities=10% Similarity=0.044 Sum_probs=25.2
Q ss_pred EEEEech-hHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHH
Q 020510 242 TITAFSK-IVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTI 283 (325)
Q Consensus 242 ~Iia~G~-~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l 283 (325)
+|++.|. .+.++++-++..++.|++.-++-.+...+.+.+.+
T Consensus 73 vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P~~~~~s~~~l 115 (289)
T PF00701_consen 73 VIAGVGANSTEEAIELARHAQDAGADAVLVIPPYYFKPSQEEL 115 (289)
T ss_dssp EEEEEESSSHHHHHHHHHHHHHTT-SEEEEEESTSSSCCHHHH
T ss_pred EEecCcchhHHHHHHHHHHHhhcCceEEEEeccccccchhhHH
Confidence 3444443 66777777777777777766666555555565543
No 381
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=26.11 E-value=1.2e+02 Score=29.38 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=26.7
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEee
Q 020510 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLR 273 (325)
Q Consensus 237 ~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~ 273 (325)
.+++++||+.|. .++|.|..|.+.|.+++|+...
T Consensus 143 ~~~~vvViGgG~---ig~E~A~~l~~~g~~Vtlv~~~ 176 (396)
T PRK09754 143 PERSVVIVGAGT---IGLELAASATQRRCKVTVIELA 176 (396)
T ss_pred cCCeEEEECCCH---HHHHHHHHHHHcCCeEEEEecC
Confidence 467899998884 4667788888889999998753
No 382
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=26.10 E-value=1.2e+02 Score=21.96 Aligned_cols=47 Identities=23% Similarity=0.273 Sum_probs=30.5
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeec--cCCCHHH---HHHHHhCC
Q 020510 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSI--RPLDRST---INASVRKT 290 (325)
Q Consensus 241 v~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l--~P~d~~~---l~~~~~~~ 290 (325)
++||+.|.. ++|.|..|.+.|.++.+|+..-- .-+|.+. +.+.+++.
T Consensus 2 vvViGgG~i---g~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~ 53 (80)
T PF00070_consen 2 VVVIGGGFI---GIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKR 53 (80)
T ss_dssp EEEESSSHH---HHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHT
T ss_pred EEEECcCHH---HHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHC
Confidence 567776654 55677778888999999985432 2356553 44455444
No 383
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=26.03 E-value=1.4e+02 Score=28.58 Aligned_cols=75 Identities=19% Similarity=0.212 Sum_probs=44.5
Q ss_pred eeCCcEEEEEechhHH-HHHHHHHHHHhcCCcEEEEEeeeccC---------CCHHHHHHHHhCCCeEEEEecCCCCCCH
Q 020510 236 REGKDVTITAFSKIVG-LSLKAAEILAKEGISAEVINLRSIRP---------LDRSTINASVRKTNRLVTVEEGFPQHGV 305 (325)
Q Consensus 236 ~~G~dv~Iia~G~~~~-~a~~Aa~~L~~~Gi~~~Vi~~~~l~P---------~d~~~l~~~~~~~~~vvvvEe~~~~GGl 305 (325)
-+|+.++||+||+.-+ +|+ -|++.|+++.| -++.=.+ |...++.+++++.+.|+++=-.-...-+
T Consensus 16 LkgK~iaIIGYGsQG~ahal----NLRDSGlnVii-Glr~g~~s~~kA~~dGf~V~~v~ea~k~ADvim~L~PDe~q~~v 90 (338)
T COG0059 16 LKGKKVAIIGYGSQGHAQAL----NLRDSGLNVII-GLRKGSSSWKKAKEDGFKVYTVEEAAKRADVVMILLPDEQQKEV 90 (338)
T ss_pred hcCCeEEEEecChHHHHHHh----hhhhcCCcEEE-EecCCchhHHHHHhcCCEeecHHHHhhcCCEEEEeCchhhHHHH
Confidence 3567899999999875 443 48889999654 4443333 3444567777777765444332223333
Q ss_pred HH-HHHHHHcC
Q 020510 306 GA-EIWCAFFP 315 (325)
Q Consensus 306 g~-~v~~~l~~ 315 (325)
.. .|...|.+
T Consensus 91 y~~~I~p~Lk~ 101 (338)
T COG0059 91 YEKEIAPNLKE 101 (338)
T ss_pred HHHHhhhhhcC
Confidence 33 55555543
No 384
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.03 E-value=2.4e+02 Score=28.10 Aligned_cols=60 Identities=23% Similarity=0.163 Sum_probs=42.0
Q ss_pred CCcEEEEEechhH-HHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCC-CeEEEEecCC
Q 020510 238 GKDVTITAFSKIV-GLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKT-NRLVTVEEGF 300 (325)
Q Consensus 238 G~dv~Iia~G~~~-~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~-~~vvvvEe~~ 300 (325)
..|+.|++.|..+ ..|++.++.|+++|+++++.-... .+ .+.++.+-+.. ..+|++-|..
T Consensus 335 ~~~v~v~~~~~~~~~~a~~la~~LR~~g~~~~~~~~~r--~~-k~q~k~A~~~g~~~~viiGe~E 396 (429)
T COG0124 335 RVDVYVVPLGEDAEPEALKLAQKLRAAGISVEVDYSGR--KL-KKQFKYADKLGARFAVILGEDE 396 (429)
T ss_pred CCCEEEEEcCchhHHHHHHHHHHHHHcCCcEEEEeccc--cH-HHHHHHHHHCCCCEEEEEcchH
Confidence 5799999999887 899999999999999998854433 22 34555433322 3456665544
No 385
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=25.90 E-value=1.8e+02 Score=25.96 Aligned_cols=46 Identities=22% Similarity=0.208 Sum_probs=37.4
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHH
Q 020510 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINAS 286 (325)
Q Consensus 241 v~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~ 286 (325)
+++++.|.--.-++-||..|...|.+++|+-+..-++...+..+..
T Consensus 53 ~vlcG~GnNGGDG~VaAR~L~~~G~~V~v~~~~~~~~~~~~~a~~~ 98 (203)
T COG0062 53 LVLCGPGNNGGDGLVAARHLKAAGYAVTVLLLGDPKKLKTEAARAN 98 (203)
T ss_pred EEEECCCCccHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHH
Confidence 3555677888899999999999999999999988888777765544
No 386
>KOG1017 consensus Predicted uracil phosphoribosyltransferase [General function prediction only]
Probab=25.79 E-value=1.6e+02 Score=26.38 Aligned_cols=55 Identities=22% Similarity=0.172 Sum_probs=34.7
Q ss_pred EEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCC--eEEEEecCC
Q 020510 242 TITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN--RLVTVEEGF 300 (325)
Q Consensus 242 ~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~--~vvvvEe~~ 300 (325)
-|+++|..+-+| .+.|+|.|+.-+.|-+.+|.--|.. .++..+++. .|++-|-|.
T Consensus 197 Pi~stGnTV~~A---v~VL~EhgVp~s~IiL~sLF~tP~g-ak~i~~~fP~itiltseihp 253 (267)
T KOG1017|consen 197 PIISTGNTVCKA---VEVLKEHGVPDSNIILVSLFITPTG-AKNITRKFPYITILTSEIHP 253 (267)
T ss_pred eeecCCccHHHH---HHHHHHcCCCcccEEEEEeeecchh-hHHHHHhCCeEEEEeeccee
Confidence 467888877655 5568889987766666666433333 345566665 456666665
No 387
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=25.65 E-value=1.7e+02 Score=25.22 Aligned_cols=29 Identities=17% Similarity=0.122 Sum_probs=25.5
Q ss_pred cEEEEEechhHHHHHHHHHHHHhcCCcEE
Q 020510 240 DVTITAFSKIVGLSLKAAEILAKEGISAE 268 (325)
Q Consensus 240 dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~ 268 (325)
.+.|+++......|.|.|.+|+++|..+.
T Consensus 67 p~~L~G~S~Gg~lA~E~A~~Le~~G~~v~ 95 (229)
T PF00975_consen 67 PYVLAGWSFGGILAFEMARQLEEAGEEVS 95 (229)
T ss_dssp SEEEEEETHHHHHHHHHHHHHHHTT-SES
T ss_pred CeeehccCccHHHHHHHHHHHHHhhhccC
Confidence 68899999999999999999999998663
No 388
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=25.58 E-value=2.4e+02 Score=27.13 Aligned_cols=54 Identities=17% Similarity=0.233 Sum_probs=35.7
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCH--------HHHHHHHhCCCeEE
Q 020510 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDR--------STINASVRKTNRLV 294 (325)
Q Consensus 237 ~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~--------~~l~~~~~~~~~vv 294 (325)
.|+.+.||++|++-+. .|..|++.|.++.+.+-+ -+..+. ..+.+++++.+-|+
T Consensus 15 kgKtVGIIG~GsIG~a---mA~nL~d~G~~ViV~~r~-~~s~~~A~~~G~~v~sl~Eaak~ADVV~ 76 (335)
T PRK13403 15 QGKTVAVIGYGSQGHA---QAQNLRDSGVEVVVGVRP-GKSFEVAKADGFEVMSVSEAVRTAQVVQ 76 (335)
T ss_pred CcCEEEEEeEcHHHHH---HHHHHHHCcCEEEEEECc-chhhHHHHHcCCEECCHHHHHhcCCEEE
Confidence 4677999999998763 345677889999888633 222211 13667777776543
No 389
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=25.50 E-value=1.1e+02 Score=27.92 Aligned_cols=37 Identities=11% Similarity=0.270 Sum_probs=19.2
Q ss_pred cEEEEEeeec-cCCCH--HHHHHHHhCCCeEEEEecCCCCC
Q 020510 266 SAEVINLRSI-RPLDR--STINASVRKTNRLVTVEEGFPQH 303 (325)
Q Consensus 266 ~~~Vi~~~~l-~P~d~--~~l~~~~~~~~~vvvvEe~~~~G 303 (325)
|--+|++.-+ +|++. +-|. .+...+-++++=+-...+
T Consensus 129 DF~~ISLSDlLtPwe~IekRl~-aAA~adfVi~~YNP~s~~ 168 (249)
T COG1010 129 DFCVISLSDLLTPWEVIEKRLR-AAAEADFVIALYNPISKR 168 (249)
T ss_pred ceEEEEhHhcCCcHHHHHHHHH-HHhhCCEEEEEECCcccc
Confidence 4455666544 66654 2232 333556677776655443
No 390
>PLN02463 lycopene beta cyclase
Probab=25.45 E-value=82 Score=31.47 Aligned_cols=36 Identities=17% Similarity=0.203 Sum_probs=25.8
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccC
Q 020510 239 KDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRP 277 (325)
Q Consensus 239 ~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P 277 (325)
-|++||+.|..- +.+|..|.+.|+++.||+.....+
T Consensus 29 ~DVvIVGaGpAG---LalA~~La~~Gl~V~liE~~~~~~ 64 (447)
T PLN02463 29 VDLVVVGGGPAG---LAVAQQVSEAGLSVCCIDPSPLSI 64 (447)
T ss_pred ceEEEECCCHHH---HHHHHHHHHCCCeEEEeccCccch
Confidence 489999988632 234455667899999999865433
No 391
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=25.33 E-value=1.2e+02 Score=28.10 Aligned_cols=32 Identities=16% Similarity=0.029 Sum_probs=26.7
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhcCCcEEEE
Q 020510 239 KDVTITAFSKIVGLSLKAAEILAKEGISAEVI 270 (325)
Q Consensus 239 ~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi 270 (325)
.++++|+-|+.+...+..++.|.+++.++.++
T Consensus 99 ~~~llIaGGiGiaPl~~l~~~l~~~~~~v~l~ 130 (281)
T PRK06222 99 GTVVCVGGGVGIAPVYPIAKALKEAGNKVITI 130 (281)
T ss_pred CeEEEEeCcCcHHHHHHHHHHHHHCCCeEEEE
Confidence 57899999999999999899888777666654
No 392
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=25.32 E-value=3.9e+02 Score=24.93 Aligned_cols=29 Identities=28% Similarity=0.352 Sum_probs=26.0
Q ss_pred EEEeeCCHHHHHHHHHHhHhCCCcEEEEe
Q 020510 177 KVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (325)
Q Consensus 177 ~V~~P~d~~e~~~~l~~a~~~~~Pv~ir~ 205 (325)
.++.|.+.+|+..+++++.+.+.|+.++-
T Consensus 33 ~vv~P~s~edv~~~v~~a~~~~~p~~v~G 61 (298)
T PRK13905 33 YLVEPADIEDLQEFLKLLKENNIPVTVLG 61 (298)
T ss_pred EEEeCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 57889999999999999998888999873
No 393
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=25.30 E-value=2.2e+02 Score=27.60 Aligned_cols=57 Identities=28% Similarity=0.338 Sum_probs=38.3
Q ss_pred CcEEEEEech-hHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHh-CCCeEEEEec
Q 020510 239 KDVTITAFSK-IVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVR-KTNRLVTVEE 298 (325)
Q Consensus 239 ~dv~Iia~G~-~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~-~~~~vvvvEe 298 (325)
.++.|++.+. ....+++.+..|.+.|+.+++ +... +++ .+.+..+-+ +...++++.+
T Consensus 323 ~~vlV~~~~~~~~~~~~~i~~~Lr~~gi~v~~-~~~~-~~l-~k~~~~a~~~g~~~~i~ig~ 381 (397)
T TIGR00442 323 PDVYVVPLGEEAELEALKLAQKLRKAGIRVEV-DLGG-RKL-KKQLKYADKLGARFAVILGE 381 (397)
T ss_pred CcEEEEEeCHHHHHHHHHHHHHHHhCCCeEEE-eCCC-CCH-HHHHHHHHHcCCCEEEEECh
Confidence 4788888775 567899999999999999976 4332 344 344443332 3456777765
No 394
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=25.29 E-value=1.3e+02 Score=29.76 Aligned_cols=50 Identities=14% Similarity=0.211 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeeeccCCC---------HHHHHHHHhCCCeEEEEecCCC
Q 020510 251 GLSLKAAEILAKEGISAEVINLRSIRPLD---------RSTINASVRKTNRLVTVEEGFP 301 (325)
Q Consensus 251 ~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d---------~~~l~~~~~~~~~vvvvEe~~~ 301 (325)
..|++..+.|++.|..+.+.|+. +++++ ...+.+.++..+.||++-||..
T Consensus 342 SPa~~ii~~l~~~g~~v~~~DP~-v~~~~~~~~~~~~~~~~~e~al~~~D~vVi~tDH~~ 400 (436)
T COG0677 342 SPALDIIELLEEWGGEVLVYDPY-VKELPTREDGEGVTLAILEEALKDADAVVIATDHSE 400 (436)
T ss_pred CchHHHHHHHHHhCCeEEEECCC-CCcchhhhhccccchhhHHHHhccCCEEEEEeccHH
Confidence 36889999999999999999977 45544 2456677878889999999985
No 395
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=25.17 E-value=1e+02 Score=29.36 Aligned_cols=33 Identities=33% Similarity=0.314 Sum_probs=27.3
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEe
Q 020510 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINL 272 (325)
Q Consensus 237 ~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~ 272 (325)
.+.+++||..| ...++++..|.+.|.++.+++-
T Consensus 17 ~~~~VvIIG~G---~aGl~aA~~l~~~g~~v~lie~ 49 (352)
T PRK12770 17 TGKKVAIIGAG---PAGLAAAGYLACLGYEVHVYDK 49 (352)
T ss_pred CCCEEEEECcC---HHHHHHHHHHHHCCCcEEEEeC
Confidence 45789999988 4557788888888999999996
No 396
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=25.15 E-value=2.6e+02 Score=23.53 Aligned_cols=33 Identities=21% Similarity=0.169 Sum_probs=20.0
Q ss_pred EEEechhHHHHHHHHHHHHhc--CCcEEEEEeeec
Q 020510 243 ITAFSKIVGLSLKAAEILAKE--GISAEVINLRSI 275 (325)
Q Consensus 243 Iia~G~~~~~a~~Aa~~L~~~--Gi~~~Vi~~~~l 275 (325)
+|.|++......++|+.+.+. +..++++++...
T Consensus 3 ~IiY~S~tGnTe~vA~~Ia~~l~~~~~~i~~~~~~ 37 (167)
T TIGR01752 3 GIFYGTDTGNTEGIAEKIQKELGEDDVDVFNIAKA 37 (167)
T ss_pred EEEEECCCChHHHHHHHHHHHhCCCceEEEEcccC
Confidence 345677777777777766543 234667666543
No 397
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=25.09 E-value=3.7e+02 Score=26.37 Aligned_cols=87 Identities=18% Similarity=0.264 Sum_probs=66.2
Q ss_pred HHHHHHHHhcCCcEEEEecCCCCccCccccchh-----HHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEeccccc
Q 020510 44 NSALDEEMSADPKVFLMGEEVGEYQGAYKISKG-----LLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFN 118 (325)
Q Consensus 44 ~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~-----~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~~~~ 118 (325)
++-|+++.....+|++=-+|+. .+|+-+.... +.++.|.+|+|-.==|=|+-++.|...|+-|+.=.+++-+-+
T Consensus 128 AkRLte~~q~ga~IylKrEdln-h~GsHKiNnav~QallakrlGkknviaETGAGQhGvatA~a~a~FGl~C~v~mgAed 206 (477)
T KOG1395|consen 128 AKRLTEHCQTGARIYLKREDLN-HTGSHKINNAVAQALLAKRLGKKNVIAETGAGQHGVATATACAKFGLDCTVYMGAED 206 (477)
T ss_pred HHHHHHHhCCCCEEEEEecCCC-ccccCCcccHHHHHHHHHHhcccceeeccCCCccchHHHHHHHHhCCceEEEechhH
Confidence 5667777777899999999986 4555443222 677888899987767779999999999999999888776666
Q ss_pred HHHHHHHHHHHHH
Q 020510 119 FSMQAIDHIINSA 131 (325)
Q Consensus 119 f~~ra~dqi~~~~ 131 (325)
+=..++.-+|+.+
T Consensus 207 ~~rqalnvfrmrl 219 (477)
T KOG1395|consen 207 YRRQALNVFRMRL 219 (477)
T ss_pred HHHHHHHHHHHHH
Confidence 6666777776654
No 398
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=25.06 E-value=4.9e+02 Score=25.57 Aligned_cols=63 Identities=14% Similarity=0.078 Sum_probs=45.3
Q ss_pred eCCcEEEEEechh-------------------HHHHHHHHHHHHhcCC-cEEEEEeeecc----------CCCHHHHHHH
Q 020510 237 EGKDVTITAFSKI-------------------VGLSLKAAEILAKEGI-SAEVINLRSIR----------PLDRSTINAS 286 (325)
Q Consensus 237 ~G~dv~Iia~G~~-------------------~~~a~~Aa~~L~~~Gi-~~~Vi~~~~l~----------P~d~~~l~~~ 286 (325)
.|+|+.||.+... +-+.+-.++.|+ .|. ++.+|=+..-+ |+..+.+.++
T Consensus 76 rg~dV~ivqs~~~~~v~~~~~~~~~~~p~nd~lmeLll~idalr-agA~rIt~ViPY~~YaRQDr~~~~e~itak~vA~l 154 (382)
T PRK06827 76 RGKDIYILQDVGNYSVTYNMFGEKNHMSPDDHFQDLKRTIDAIR-GKARRITVIMPFLYESRQHKRKGRESLDCALALQE 154 (382)
T ss_pred CCCeEEEEecCCcccccccccccccCCCCcHHHHHHHHHHHHHh-cCCCeEEEEeecccccccccccCCCCccHHHHHHH
Confidence 3789999888531 345556778888 775 57777555443 7778888888
Q ss_pred HhC--CCeEEEEecCC
Q 020510 287 VRK--TNRLVTVEEGF 300 (325)
Q Consensus 287 ~~~--~~~vvvvEe~~ 300 (325)
+.. .++|+|+|-|.
T Consensus 155 L~~~G~d~vitvDlHs 170 (382)
T PRK06827 155 LEELGVDNIITFDAHD 170 (382)
T ss_pred HHHcCCCeEEEecCCh
Confidence 865 57899999997
No 399
>TIGR00106 uncharacterized protein, MTH1187 family. This protein has been crystallized in both Methanobacterium thermoautotrophicum and yeast, but its function remains unknown. Both crystal structures showed sulfate ions bound at the interface of two dimers to form a tetramer.
Probab=24.98 E-value=1.8e+02 Score=22.54 Aligned_cols=49 Identities=16% Similarity=0.300 Sum_probs=32.8
Q ss_pred cEEEEEec----hhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHh
Q 020510 240 DVTITAFS----KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVR 288 (325)
Q Consensus 240 dv~Iia~G----~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~ 288 (325)
|++++-.| +....+-++.+.|++.|++..+=-+.|.--=|.+.+.++++
T Consensus 4 eisv~P~g~~~~s~s~yVa~~i~~l~~sGl~y~~~pm~T~IEGe~dev~~~i~ 56 (97)
T TIGR00106 4 EVSIIPIGTVGASVSSYVAAAIEVLKESGLKYELHPMGTLIEGDLDELFEAIK 56 (97)
T ss_pred EEEEeecCCCCCcHHHHHHHHHHHHHHcCCCeEecCCccEEecCHHHHHHHHH
Confidence 45666666 44556667888888889999887777774445555444444
No 400
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=24.96 E-value=3.9e+02 Score=24.47 Aligned_cols=71 Identities=14% Similarity=0.217 Sum_probs=41.1
Q ss_pred CcEEEEEec-hhHHHHHHHHHHHHhcCCcE-EEEEeeec---cCCCHHHHHH-HHhCCCeEEEEecCCCCCCHHHHHHHH
Q 020510 239 KDVTITAFS-KIVGLSLKAAEILAKEGISA-EVINLRSI---RPLDRSTINA-SVRKTNRLVTVEEGFPQHGVGAEIWCA 312 (325)
Q Consensus 239 ~dv~Iia~G-~~~~~a~~Aa~~L~~~Gi~~-~Vi~~~~l---~P~d~~~l~~-~~~~~~~vvvvEe~~~~GGlg~~v~~~ 312 (325)
..+-+++.| +-+..|.||+..++.-|+++ .++|+--- +-|+ .+.. .++..+.++|+ -+. .|-|-+.|+..
T Consensus 118 g~vgvlsAGTSDlPvAeEa~~tae~lG~ev~~~~DvGVAGiHRLl~--~l~r~~~~~~~~lIVv-AGM-EGaLPsvvagL 193 (254)
T COG1691 118 GKVGVLSAGTSDLPVAEEAAVTAEELGVEVQKVYDVGVAGIHRLLS--ALKRLKIEDADVLIVV-AGM-EGALPSVVAGL 193 (254)
T ss_pred ceEEEEecCCCCcchHHHHHHHHHHhCceEEEEEeeccchHHhhhh--HHHHHHhhCCCeEEEE-ccc-ccchHHHHHhc
Confidence 457789999 55688889988888888865 56665321 1122 1111 23344545544 332 46676666644
Q ss_pred H
Q 020510 313 F 313 (325)
Q Consensus 313 l 313 (325)
+
T Consensus 194 v 194 (254)
T COG1691 194 V 194 (254)
T ss_pred c
Confidence 3
No 401
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=24.90 E-value=2.2e+02 Score=27.65 Aligned_cols=57 Identities=23% Similarity=0.296 Sum_probs=36.8
Q ss_pred CcEEEEEech-hHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHh-CCCeEEEEec
Q 020510 239 KDVTITAFSK-IVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVR-KTNRLVTVEE 298 (325)
Q Consensus 239 ~dv~Iia~G~-~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~-~~~~vvvvEe 298 (325)
.++.|+..+. ....+++.++.|+++|+.+.+ +... ..+ .+.+..+-+ +...++++.+
T Consensus 319 ~~vlI~~~~~~~~~~a~~i~~~Lr~~Gi~v~i-~~~~-~~~-~~~~~~a~~~gi~~~viig~ 377 (412)
T PRK00037 319 VDVYVVPLGEDAELAALKLAEKLRAAGIRVEL-DYGG-RKL-KKQFKYADKSGARFVLILGE 377 (412)
T ss_pred CCEEEEEeChHHHHHHHHHHHHHHHCCCeEEE-eCCC-CCH-HHHHHHHHHcCCCEEEEECh
Confidence 5888888774 346799999999999999887 4432 233 344443332 3345666654
No 402
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=24.87 E-value=1.1e+02 Score=25.07 Aligned_cols=40 Identities=18% Similarity=0.297 Sum_probs=23.6
Q ss_pred HHHHHHHHHh-cCCcEEEEEeeeccC--CCHHHHHHHHhCCCeEE
Q 020510 253 SLKAAEILAK-EGISAEVINLRSIRP--LDRSTINASVRKTNRLV 294 (325)
Q Consensus 253 a~~Aa~~L~~-~Gi~~~Vi~~~~l~P--~d~~~l~~~~~~~~~vv 294 (325)
..++++.|++ .|+. ++-+..=.+ .|.+.|.++......++
T Consensus 119 ~~~~~~~l~~~~~v~--v~~vg~g~~~~~~~~~L~~ia~~~~~~~ 161 (163)
T cd01476 119 PEKQARILRAVPNIE--TFAVGTGDPGTVDTEELHSITGNEDHIF 161 (163)
T ss_pred hHHHHHHHhhcCCCE--EEEEECCCccccCHHHHHHHhCCCcccc
Confidence 3455667777 4544 444443355 88888887655544443
No 403
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=24.84 E-value=1.6e+02 Score=23.27 Aligned_cols=46 Identities=24% Similarity=0.319 Sum_probs=32.6
Q ss_pred CCcEEEEEechhHHHHHH-HHHHHHhcCCcEEEEEeeeccCCCHHHHHH
Q 020510 238 GKDVTITAFSKIVGLSLK-AAEILAKEGISAEVINLRSIRPLDRSTINA 285 (325)
Q Consensus 238 G~dv~Iia~G~~~~~a~~-Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~ 285 (325)
..|++|+ |+.+...+. ..+.+.+.|+.+.|||...--+.|-+.+.+
T Consensus 48 ~~DvvLl--GPQv~y~~~~~~~~~~~~giPV~vI~~~dYG~mnG~kvL~ 94 (102)
T COG1440 48 NADVVLL--GPQVRYMLKQLKEAAEEKGIPVEVIDMLDYGMMNGEKVLE 94 (102)
T ss_pred cCCEEEE--ChHHHHHHHHHHHHhcccCCCeEEeCHHHccCcCcHHHHH
Confidence 4577776 788876664 444455669999999988877788765443
No 404
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=24.73 E-value=40 Score=27.22 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=25.5
Q ss_pred eeeCCcEEEEEechhH--HHHHHHHHHHHhcCCcEEEEE
Q 020510 235 EREGKDVTITAFSKIV--GLSLKAAEILAKEGISAEVIN 271 (325)
Q Consensus 235 l~~G~dv~Iia~G~~~--~~a~~Aa~~L~~~Gi~~~Vi~ 271 (325)
+..+.+++||++|... ..--+..+.|++.||.+.+.+
T Consensus 55 l~~~peivliGTG~~~~~~~~~~~~~~l~~~Gi~ve~m~ 93 (117)
T cd05126 55 LEEGVEVIVIGTGQSGALKVPPETVEKLEKRGVEVLVLP 93 (117)
T ss_pred HhcCCCEEEEcCCCCccccCCHHHHHHHHhcCCEEEEcC
Confidence 4456789999999763 234455567888787776644
No 405
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=24.72 E-value=3e+02 Score=23.94 Aligned_cols=60 Identities=15% Similarity=0.037 Sum_probs=37.7
Q ss_pred HHHHHHHHHhcCCcEEEEEeeeccC---CCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHH
Q 020510 253 SLKAAEILAKEGISAEVINLRSIRP---LDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAF 313 (325)
Q Consensus 253 a~~Aa~~L~~~Gi~~~Vi~~~~l~P---~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l 313 (325)
+.++.....+++.++++.|+...+| +|.+.=.+.+..++.||+.=--+ ..|+-+.+..++
T Consensus 22 ~n~~l~~~~~~~~~v~~~DL~~~~p~~~~d~~~eq~~l~~aD~iV~~fPl~-w~~~Pa~LK~wi 84 (184)
T PRK04930 22 ANRVLLKPAQQLEHVTVHDLYAHYPDFFIDIPHEQALLREHDVIVFQHPLY-TYSCPALLKEWL 84 (184)
T ss_pred HHHHHHHHHHcCCceEEEECcccCCCCCCCHHHHHHHHHhCCEEEEEcCcc-ccCCcHHHHHHH
Confidence 3344444444566899999999877 67766566777888766553333 345556665444
No 406
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=24.69 E-value=7.1e+02 Score=24.82 Aligned_cols=52 Identities=19% Similarity=0.160 Sum_probs=32.9
Q ss_pred CCEEEEeCCCCCCCCCCCcchHHH-------HHHhcCCCc-EEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510 144 VPIVFRGPNGAAAGVGAQHSHCYA-------AWYASVPGL-KVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 144 ~pvv~~~~~G~~~g~G~tHs~~~~-------a~~~~iP~~-~V~~P~d~~e~~~~l~~a~~~~~Pv~ir 204 (325)
-|+.+..+ ||..+++ ++....||+ .|+.|..|+-...+-+.+-+.+-.+.-|
T Consensus 231 r~v~iaaS---------TH~GEeei~l~~~~~l~~~~~~~llIlVPRHpERf~~v~~l~~~~gl~~~~r 290 (419)
T COG1519 231 RPVWVAAS---------THEGEEEIILDAHQALKKQFPNLLLILVPRHPERFKAVENLLKRKGLSVTRR 290 (419)
T ss_pred CceEEEec---------CCCchHHHHHHHHHHHHhhCCCceEEEecCChhhHHHHHHHHHHcCCeEEee
Confidence 56666543 5744443 344556765 6889999999888777666643344333
No 407
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=24.66 E-value=1.2e+02 Score=23.28 Aligned_cols=30 Identities=33% Similarity=0.447 Sum_probs=16.3
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCcEEEEEee
Q 020510 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLR 273 (325)
Q Consensus 241 v~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~ 273 (325)
++|+++|.... +.++.|++.++++.+++..
T Consensus 1 vvI~G~g~~~~---~i~~~L~~~~~~vvvid~d 30 (116)
T PF02254_consen 1 VVIIGYGRIGR---EIAEQLKEGGIDVVVIDRD 30 (116)
T ss_dssp EEEES-SHHHH---HHHHHHHHTTSEEEEEESS
T ss_pred eEEEcCCHHHH---HHHHHHHhCCCEEEEEECC
Confidence 35666665444 3445566656666666644
No 408
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=24.65 E-value=3.8e+02 Score=21.65 Aligned_cols=60 Identities=8% Similarity=-0.010 Sum_probs=41.6
Q ss_pred EEEEEechhHHHHHHHHHHHHhc-CCcEEEEEeeeccCCCHHHHHHHHhC-CCeEEEEecCC
Q 020510 241 VTITAFSKIVGLSLKAAEILAKE-GISAEVINLRSIRPLDRSTINASVRK-TNRLVTVEEGF 300 (325)
Q Consensus 241 v~Iia~G~~~~~a~~Aa~~L~~~-Gi~~~Vi~~~~l~P~d~~~l~~~~~~-~~~vvvvEe~~ 300 (325)
++.+++-.....+.+.+-..+.+ --++.+|.+++.--+|.+.|.+.+++ .+.|+|+-.|.
T Consensus 2 Il~F~C~~~ay~aad~ag~~~~~~p~~vriIrvpC~Grv~~~~il~Af~~GADGV~V~gC~~ 63 (124)
T PF02662_consen 2 ILAFCCNWCAYAAADLAGVSRLQYPPNVRIIRVPCSGRVDPEFILRAFEKGADGVLVAGCHP 63 (124)
T ss_pred EEEEEeCCCcHHHHHHHhhccCCCCCCeEEEEccCCCccCHHHHHHHHHcCCCEEEEeCCCC
Confidence 45556555555555544444323 34699999999999999998888876 46788875553
No 409
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=24.60 E-value=3.3e+02 Score=25.63 Aligned_cols=23 Identities=13% Similarity=0.099 Sum_probs=15.3
Q ss_pred CCHHHHHHHHhCCCeEEEEecCC
Q 020510 278 LDRSTINASVRKTNRLVTVEEGF 300 (325)
Q Consensus 278 ~d~~~l~~~~~~~~~vvvvEe~~ 300 (325)
+|.+.|.+++++++.++++|.-.
T Consensus 148 ~~~~~i~~l~~~~~~~livDa~~ 170 (368)
T PRK13479 148 NPLDEIAAVAKRHGKRLIVDAMS 170 (368)
T ss_pred cCHHHHHHHHHHcCCEEEEEccc
Confidence 56777778887776666666433
No 410
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=24.57 E-value=2e+02 Score=28.16 Aligned_cols=80 Identities=16% Similarity=0.118 Sum_probs=47.5
Q ss_pred EEeeCCHHHHHHHHHHhHhCCCcEEEEeCcc-ccCcccCccccccCCCccc---cCCceEEeeeCCcEEEEEechhHHHH
Q 020510 178 VLSPYSSEDARGLLKAAIRDPDPVVFLENEL-LYGESFPVSAEVLDSSFCL---PIGKAKIEREGKDVTITAFSKIVGLS 253 (325)
Q Consensus 178 V~~P~d~~e~~~~l~~a~~~~~Pv~ir~~~~-l~~~~~p~~~~~~~~~~~~---~~gk~~vl~~G~dv~Iia~G~~~~~a 253 (325)
|+.|.+.+|+..++++|.+++-|++++-... +.+...|. +....+ .+.+...+.+....+.+-.|......
T Consensus 1 Vv~P~s~eev~~iv~~a~~~~i~v~~~G~Gt~~~g~~~~~-----~~~vvidl~~mn~i~~id~~~~~v~veaGv~~~~l 75 (413)
T TIGR00387 1 VVFPKNTEQVARILKLCHEHRIPIVPRGAGTGLSGGALPE-----EGGLVLVFKHMNKILEIDVVNLTAVVQPGVRNLEL 75 (413)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCCCCccCC-----CCeEEEEhHHcCceeEEcCCCCEEEEcCCccHHHH
Confidence 5689999999999999999989999974321 11111111 011111 12232223334567777888888877
Q ss_pred HHHHHHHHhcCC
Q 020510 254 LKAAEILAKEGI 265 (325)
Q Consensus 254 ~~Aa~~L~~~Gi 265 (325)
.++ |++.|.
T Consensus 76 ~~~---l~~~gl 84 (413)
T TIGR00387 76 EQA---VEEHNL 84 (413)
T ss_pred HHH---HHHcCC
Confidence 665 445554
No 411
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=24.44 E-value=1.5e+02 Score=26.67 Aligned_cols=34 Identities=15% Similarity=-0.030 Sum_probs=27.1
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEE
Q 020510 238 GKDVTITAFSKIVGLSLKAAEILAKEGISAEVIN 271 (325)
Q Consensus 238 G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~ 271 (325)
..++++||.|+.....+..++.+.+.+.++.++-
T Consensus 97 ~~~~lliagG~GiaP~~~~l~~~~~~~~~v~l~~ 130 (248)
T cd06219 97 YGTVVFVGGGVGIAPIYPIAKALKEAGNRVITII 130 (248)
T ss_pred CCeEEEEeCcccHHHHHHHHHHHHHcCCeEEEEE
Confidence 3579999999999988888888776676777654
No 412
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=24.40 E-value=1.2e+02 Score=25.96 Aligned_cols=52 Identities=27% Similarity=0.484 Sum_probs=32.0
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCCeEEEEe
Q 020510 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVE 297 (325)
Q Consensus 237 ~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvE 297 (325)
+|++++||.-+..+..-+ +..|.++|..+++.+-.| +.+.+.+++.+ ||+..
T Consensus 35 ~Gk~v~VvGrs~~VG~Pl--a~lL~~~~atVt~~h~~T------~~l~~~~~~AD-IVVsa 86 (160)
T PF02882_consen 35 EGKKVVVVGRSNIVGKPL--AMLLLNKGATVTICHSKT------KNLQEITRRAD-IVVSA 86 (160)
T ss_dssp TT-EEEEE-TTTTTHHHH--HHHHHHTT-EEEEE-TTS------SSHHHHHTTSS-EEEE-
T ss_pred CCCEEEEECCcCCCChHH--HHHHHhCCCeEEeccCCC------Ccccceeeecc-EEeee
Confidence 567899998888777654 357778888888877776 33455666665 44443
No 413
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=24.40 E-value=2.5e+02 Score=24.31 Aligned_cols=45 Identities=4% Similarity=0.003 Sum_probs=32.4
Q ss_pred EEEEEechhH----HHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHh
Q 020510 241 VTITAFSKIV----GLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVR 288 (325)
Q Consensus 241 v~Iia~G~~~----~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~ 288 (325)
++|++-|..- ....++++.|+++||.+-+|-+... +.+.|+.++.
T Consensus 112 ~IllTDG~s~~~~~~~~~~~a~~lk~~gV~i~~vGiG~~---~~~el~~ia~ 160 (192)
T cd01473 112 TMLFTDGNDTSASKKELQDISLLYKEENVKLLVVGVGAA---SENKLKLLAG 160 (192)
T ss_pred EEEEecCCCCCcchhhHHHHHHHHHHCCCEEEEEEeccc---cHHHHHHhcC
Confidence 4566666543 3466888999999999999998864 5666776554
No 414
>PHA03050 glutaredoxin; Provisional
Probab=24.40 E-value=3.5e+02 Score=21.20 Aligned_cols=70 Identities=14% Similarity=0.124 Sum_probs=42.0
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhcCC---cEEEEEeeeccCCCHH---HHHHHHhC-CCeEEEEecCCCCCCHHHHHH
Q 020510 238 GKDVTITAFSKIVGLSLKAAEILAKEGI---SAEVINLRSIRPLDRS---TINASVRK-TNRLVTVEEGFPQHGVGAEIW 310 (325)
Q Consensus 238 G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi---~~~Vi~~~~l~P~d~~---~l~~~~~~-~~~vvvvEe~~~~GGlg~~v~ 310 (325)
.++++|++. +....+.+|.+.|++.|+ +.+++|+.... -+.+ .+.+.-.+ +=..|++.+ ...||+....+
T Consensus 12 ~~~V~vys~-~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~-~~~~~~~~l~~~tG~~tVP~IfI~g-~~iGG~ddl~~ 88 (108)
T PHA03050 12 NNKVTIFVK-FTCPFCRNALDILNKFSFKRGAYEIVDIKEFK-PENELRDYFEQITGGRTVPRIFFGK-TSIGGYSDLLE 88 (108)
T ss_pred cCCEEEEEC-CCChHHHHHHHHHHHcCCCcCCcEEEECCCCC-CCHHHHHHHHHHcCCCCcCEEEECC-EEEeChHHHHH
Confidence 456777664 446677888888988898 78899988432 2322 23322222 113455655 44799865554
No 415
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=24.29 E-value=2.1e+02 Score=28.41 Aligned_cols=34 Identities=18% Similarity=0.226 Sum_probs=21.3
Q ss_pred EEEEEeeec-cC----CCHHHHHHHHhCCCeEEEEecCCC
Q 020510 267 AEVINLRSI-RP----LDRSTINASVRKTNRLVTVEEGFP 301 (325)
Q Consensus 267 ~~Vi~~~~l-~P----~d~~~l~~~~~~~~~vvvvEe~~~ 301 (325)
..+|-+.++ +| .|.+.|.+++++++..+++ |+..
T Consensus 150 TklV~~e~~~np~g~v~Di~~I~~la~~~gi~liv-D~t~ 188 (433)
T PRK08134 150 TRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLV-DSTF 188 (433)
T ss_pred CeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEE-ECCC
Confidence 344444444 55 8999999988887644444 4443
No 416
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=24.20 E-value=1.5e+02 Score=27.31 Aligned_cols=61 Identities=16% Similarity=0.121 Sum_probs=34.4
Q ss_pred cCCEEEEeCCCCCCCCCCCc-chHHHHHHhcCCCcEEEeeCCHHHHHHHHHHhHhCCCcEEEE
Q 020510 143 SVPIVFRGPNGAAAGVGAQH-SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (325)
Q Consensus 143 ~~pvv~~~~~G~~~g~G~tH-s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~ir 204 (325)
-+|+.+... +-..-++.+= ...+...++.-+.+.--++.++.|...+++...+....+++.
T Consensus 23 vvPl~I~~~-~~~y~D~~~i~~~~~y~~~~~~~~~p~TS~ps~~~~~~~~~~l~~~~~~vi~i 84 (275)
T TIGR00762 23 VVPLTVIID-GKTYRDGVDITPEEFYEKLKESKELPKTSQPSPGEFLELYEKLLEEGDEVLSI 84 (275)
T ss_pred EEEEEEEEC-CEEeecCCCCCHHHHHHHHHhcCCCCCcCCCCHHHHHHHHHHHHhCCCeEEEE
Confidence 346655443 3223333321 123334454433343567788899999998888876676654
No 417
>PRK05920 aromatic acid decarboxylase; Validated
Probab=23.95 E-value=1.6e+02 Score=26.18 Aligned_cols=34 Identities=9% Similarity=0.031 Sum_probs=24.8
Q ss_pred CCcEEEEEechhH-HHHHHHHHHHHhcCCcEEEEE
Q 020510 238 GKDVTITAFSKIV-GLSLKAAEILAKEGISAEVIN 271 (325)
Q Consensus 238 G~dv~Iia~G~~~-~~a~~Aa~~L~~~Gi~~~Vi~ 271 (325)
++.++|--+|+.. ..+.+.++.|.+.|.++.|+=
T Consensus 3 ~krIllgITGsiaa~ka~~lvr~L~~~g~~V~vi~ 37 (204)
T PRK05920 3 MKRIVLAITGASGAIYGVRLLECLLAADYEVHLVI 37 (204)
T ss_pred CCEEEEEEeCHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 3456666667544 788888889988888877764
No 418
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=23.83 E-value=1.3e+02 Score=24.16 Aligned_cols=47 Identities=17% Similarity=0.160 Sum_probs=31.7
Q ss_pred EEEEEechhHH--HHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCC
Q 020510 241 VTITAFSKIVG--LSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKT 290 (325)
Q Consensus 241 v~Iia~G~~~~--~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~ 290 (325)
+++++-|.... ...++++.|+++|+.+-.|-+.. .+.+.+.++...+
T Consensus 107 iiliTDG~~~~~~~~~~~~~~~~~~~v~v~~i~~g~---~~~~~l~~la~~~ 155 (161)
T cd01450 107 IIVLTDGRSDDGGDPKEAAAKLKDEGIKVFVVGVGP---ADEEELREIASCP 155 (161)
T ss_pred EEEECCCCCCCCcchHHHHHHHHHCCCEEEEEeccc---cCHHHHHHHhCCC
Confidence 44555553322 36777888988888888777655 5788888776654
No 419
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=23.80 E-value=3.1e+02 Score=28.86 Aligned_cols=75 Identities=12% Similarity=0.096 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhhccccCCCCccCC-EEEEeCCCCCCCCCCCc---chHHHHHHhcCCCcEEEee---CCHHHHHHHHHHh
Q 020510 122 QAIDHIINSAAKSNYMSSGQISVP-IVFRGPNGAAAGVGAQH---SHCYAAWYASVPGLKVLSP---YSSEDARGLLKAA 194 (325)
Q Consensus 122 ra~dqi~~~~a~~~~~~~~~~~~p-vv~~~~~G~~~g~G~tH---s~~~~a~~~~iP~~~V~~P---~d~~e~~~~l~~a 194 (325)
..+|.+.. ++. .++| ++++..+....-+|.+. ...+...+++. |+.++.- .|..++..+++.+
T Consensus 158 ~~~EA~~~-A~~--------~~L~nLi~ivd~N~~~i~~~~~~~~~~~~~~~~~a~-Gw~~~~v~DG~D~~ai~~A~~~a 227 (653)
T TIGR00232 158 ISYEVASL-AGH--------LKLGKLIVLYDSNRISIDGAVDGSFTEDVAKRFEAY-GWEVLEVEDGHDLAAIDAAIEEA 227 (653)
T ss_pred HHHHHHHH-HHH--------hCCCcEEEEEeCCCeeeccccccccCccHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHHH
Confidence 56776643 443 5787 44443332111123332 12334677777 7877765 3555666666666
Q ss_pred HhCC-CcEEEEeC
Q 020510 195 IRDP-DPVVFLEN 206 (325)
Q Consensus 195 ~~~~-~Pv~ir~~ 206 (325)
.+.+ +|++|...
T Consensus 228 ~~~~~~P~~I~~~ 240 (653)
T TIGR00232 228 KASKDKPTLIEVT 240 (653)
T ss_pred HhCCCCCEEEEEE
Confidence 5543 79998643
No 420
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=23.59 E-value=1.6e+02 Score=23.04 Aligned_cols=31 Identities=23% Similarity=0.205 Sum_probs=26.4
Q ss_pred EEEEEechhHHHHHHHHHHHHhcC-CcEEEEE
Q 020510 241 VTITAFSKIVGLSLKAAEILAKEG-ISAEVIN 271 (325)
Q Consensus 241 v~Iia~G~~~~~a~~Aa~~L~~~G-i~~~Vi~ 271 (325)
+.|++.|.....+..++..|...| +.+.+++
T Consensus 2 I~i~G~G~S~~~a~~~~~~l~~~~~~~~~~~~ 33 (126)
T cd05008 2 ILIVGCGTSYHAALVAKYLLERLAGIPVEVEA 33 (126)
T ss_pred EEEEEccHHHHHHHHHHHHHHHhcCCceEEEe
Confidence 678999999999999999998775 7887766
No 421
>cd06064 H2MP_F420-Reduc Endopeptidases belonging to F420-reducing hydrogenases group. These hydrogenases from methanogens are encoded by the fru, frc, or frh genes. Sequence comparison indicates that fruD and frcD gene products from Methanococcus voltae are similar to HycI protease of Escherichia coli and are putatively involved in the C-terminal processing of large subunits (FruA and FrcA respectively). FrhD (F420 reducing hydrogenase delta subunit) enzyme belongs to the gene cluster of 8-hydroxy-5-deazaflavin (F420) reducing hydrogenase (FRH) from the thermophilic methanogen Methanobacterium thermoautotrophicum delta H. FrhD subunit is putatively involved in the processing of the coenzyme F420 hydrogenase-processing. It is similar to those frhD genes found in Methanomicrobia and Methanobacteria. It is different from the FrhD conserved domain found in methyl viologen-reducing hydrogenase and F420-non-reducing hydrogenase iron-sulfur subunit D.
Probab=23.56 E-value=1.2e+02 Score=25.24 Aligned_cols=53 Identities=17% Similarity=0.283 Sum_probs=30.2
Q ss_pred EEEechhH----HHHHHHHHHHHhcCC---cEEEEEeeeccCCCHHHHHHHHh---CCCeEEEEec
Q 020510 243 ITAFSKIV----GLSLKAAEILAKEGI---SAEVINLRSIRPLDRSTINASVR---KTNRLVTVEE 298 (325)
Q Consensus 243 Iia~G~~~----~~a~~Aa~~L~~~Gi---~~~Vi~~~~l~P~d~~~l~~~~~---~~~~vvvvEe 298 (325)
|+++|+.. .....+++.|++... +++++|..+.- .+.+...+. +.++++++|=
T Consensus 2 ViGiGN~l~gDDgvG~~va~~l~~~~~~~~~v~vid~g~~~---~~~~~~~~~~~~~~d~viivDA 64 (150)
T cd06064 2 VVGCGNILFGDDGFGPAVIEELEKLELLPDNVQVIDAGTGA---PHLLFTLLDEESKPKKIIIVDA 64 (150)
T ss_pred EEEECCcccccCcHHHHHHHHHHhccCCCCCEEEEECCCcH---HHHHHHHHhccCCCCEEEEEEe
Confidence 55666555 245667777766532 47788877752 222222222 3677777766
No 422
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=23.42 E-value=1.1e+02 Score=23.67 Aligned_cols=35 Identities=20% Similarity=0.055 Sum_probs=21.7
Q ss_pred eeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEE
Q 020510 236 REGKDVTITAFSKIVGLSLKAAEILAKEGISAEVI 270 (325)
Q Consensus 236 ~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi 270 (325)
.++..+++++.+.....+..++..|++.|+++.++
T Consensus 62 ~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~v~~l 96 (110)
T cd01521 62 DKEKLFVVYCDGPGCNGATKAALKLAELGFPVKEM 96 (110)
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHcCCeEEEe
Confidence 34556777665433235667778888888864433
No 423
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=23.40 E-value=6.2e+02 Score=26.44 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=21.5
Q ss_pred HhcCCCcEEEeeCCHH---HHHHHHHHhHhCCCcEEEEe
Q 020510 170 YASVPGLKVLSPYSSE---DARGLLKAAIRDPDPVVFLE 205 (325)
Q Consensus 170 ~~~iP~~~V~~P~d~~---e~~~~l~~a~~~~~Pv~ir~ 205 (325)
|..+ |+.++-|.|.. ++..+++.+-+.++|++|..
T Consensus 234 f~~~-G~~~~~~vDGhd~~~l~~al~~ak~~~~P~~i~~ 271 (617)
T TIGR00204 234 FEEL-GFNYIGPVDGHDLLELIETLKNAKKLKGPVFLHI 271 (617)
T ss_pred HHHc-CCcEEcccCCCCHHHHHHHHHHHhcCCCCEEEEE
Confidence 4444 66677666665 44555555545578999864
No 424
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=23.28 E-value=2.2e+02 Score=28.30 Aligned_cols=23 Identities=9% Similarity=0.157 Sum_probs=16.2
Q ss_pred CCHHHHHHHHhCCCeEEEEecCCC
Q 020510 278 LDRSTINASVRKTNRLVTVEEGFP 301 (325)
Q Consensus 278 ~d~~~l~~~~~~~~~vvvvEe~~~ 301 (325)
.|.+.|.+++++.+.++ ++|+..
T Consensus 172 ~di~~I~~la~~~gi~l-ivD~t~ 194 (437)
T PRK05613 172 LDIPAVAEVAHRNQVPL-IVDNTI 194 (437)
T ss_pred cCHHHHHHHHHHcCCeE-EEECCC
Confidence 79999999888776544 445443
No 425
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=23.20 E-value=4e+02 Score=24.75 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=20.9
Q ss_pred cCCCcEEEeeCCHHHHHHHHHHhHh----CCCcEEEEe
Q 020510 172 SVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLE 205 (325)
Q Consensus 172 ~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~ir~ 205 (325)
.+|++.| .-.|+.++...++.+++ .++|++|-.
T Consensus 189 G~~~~~V-dg~d~~~v~~a~~~A~~~ar~~~~P~lIev 225 (293)
T cd02000 189 GIPGIRV-DGNDVLAVYEAAKEAVERARAGGGPTLIEA 225 (293)
T ss_pred CCCEEEE-CCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 3555433 33467787777777764 468999853
No 426
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional
Probab=23.09 E-value=1.2e+02 Score=27.67 Aligned_cols=48 Identities=4% Similarity=0.043 Sum_probs=27.2
Q ss_pred EEEEEeeeccCC-CHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcCCCc
Q 020510 267 AEVINLRSIRPL-DRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFPPAW 318 (325)
Q Consensus 267 ~~Vi~~~~l~P~-d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~~~~ 318 (325)
+.++.++--.|. +.+.+.+.++....+++++... --..|++.|.+.|+
T Consensus 140 ~~v~s~hG~~~~~~~~~l~~~~~~~~t~vi~~~~~----~~~~i~~~L~~~g~ 188 (257)
T PRK15473 140 LIITRMEGRTPVPAREQLESFASHQTSMAIFLSVQ----RIHRVAERLIAGGY 188 (257)
T ss_pred EEEEeecCCCCCCchhhHHHHhcCCCeEEEECCch----hHHHHHHHHHHcCC
Confidence 334444433333 3345666665555777786432 24677888877766
No 427
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=23.01 E-value=3.1e+02 Score=26.52 Aligned_cols=24 Identities=13% Similarity=0.173 Sum_probs=19.0
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHcCCCc
Q 020510 291 NRLVTVEEGFPQHGVGAEIWCAFFPPAW 318 (325)
Q Consensus 291 ~~vvvvEe~~~~GGlg~~v~~~l~~~~~ 318 (325)
.+|+++ -.||+|+.++..|...|+
T Consensus 136 ~~Vlvv----G~GG~Gs~ia~~La~~Gv 159 (376)
T PRK08762 136 ARVLLI----GAGGLGSPAALYLAAAGV 159 (376)
T ss_pred CcEEEE----CCCHHHHHHHHHHHHcCC
Confidence 357777 359999999999987775
No 428
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=22.87 E-value=3.2e+02 Score=26.60 Aligned_cols=70 Identities=14% Similarity=0.199 Sum_probs=38.8
Q ss_pred CcEEEEEechhHHHHHHH----HHHHH--hcCCcEEEEEeeeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHH
Q 020510 239 KDVTITAFSKIVGLSLKA----AEILA--KEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCA 312 (325)
Q Consensus 239 ~dv~Iia~G~~~~~a~~A----a~~L~--~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~ 312 (325)
++++ |.|+++.....+. ++.++ +.|++++++++... +.+.+.+.+.+++.+++- --...+|.-..+...
T Consensus 248 ~kv~-IvY~S~~GnTe~mA~~ia~g~~~~~~g~~v~~~~~~~~---~~~~i~~~~~~~d~ii~G-spT~~~~~~~~~~~~ 322 (394)
T PRK11921 248 NQVT-ILYDTMWNSTRRMAEAIAEGIKKANKDVTVKLYNSAKS---DKNDIITEVFKSKAILVG-SSTINRGILSSTAAI 322 (394)
T ss_pred CcEE-EEEECCchHHHHHHHHHHHHHhhcCCCCeEEEEECCCC---CHHHHHHHHHhCCEEEEE-CCCcCccccHHHHHH
Confidence 4454 4466666544444 44555 45788888887654 555555555566655544 323345644555544
Q ss_pred H
Q 020510 313 F 313 (325)
Q Consensus 313 l 313 (325)
+
T Consensus 323 l 323 (394)
T PRK11921 323 L 323 (394)
T ss_pred H
Confidence 4
No 429
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=22.82 E-value=1.6e+02 Score=23.70 Aligned_cols=79 Identities=11% Similarity=0.038 Sum_probs=0.0
Q ss_pred eeeCCcEEEEEechhHHHHHHHHHHHHhcC-CcEEEEEeeeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHH
Q 020510 235 EREGKDVTITAFSKIVGLSLKAAEILAKEG-ISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAF 313 (325)
Q Consensus 235 l~~G~dv~Iia~G~~~~~a~~Aa~~L~~~G-i~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l 313 (325)
+.+-+.+.++++|.....|.+.+-+|.+.+ +.+..++..-+.--+...+. +...++++--+-..--.-..+...+
T Consensus 10 ~~~~~~i~~~G~G~s~~~a~e~~~kl~e~~~i~~~~~~~~e~~hg~~~~~~----~~~~vi~is~~g~t~~~~~~~~~~~ 85 (153)
T cd05009 10 LKEAKSFYVLGRGPNYGTALEGALKLKETSYIHAEAYSAGEFKHGPIALVD----EGTPVIFLAPEDRLEEKLESLIKEV 85 (153)
T ss_pred HhccCcEEEEcCCCCHHHHHHHHHHHHHHHhhcceeccHHHhccChhhhcc----CCCcEEEEecCChhHHHHHHHHHHH
Q ss_pred cCCC
Q 020510 314 FPPA 317 (325)
Q Consensus 314 ~~~~ 317 (325)
.+.+
T Consensus 86 ~~~~ 89 (153)
T cd05009 86 KARG 89 (153)
T ss_pred HHcC
No 430
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.58 E-value=2.5e+02 Score=26.29 Aligned_cols=53 Identities=19% Similarity=0.320 Sum_probs=31.3
Q ss_pred eeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCCeEEEE
Q 020510 236 REGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTV 296 (325)
Q Consensus 236 ~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvv 296 (325)
-+|++++||+.|..+..++ +..|.++|..+.|.+-+ .+.|.+.+++.+-||..
T Consensus 157 l~Gk~vvViG~gg~vGkpi--a~~L~~~gatVtv~~~~------t~~L~~~~~~aDIvI~A 209 (283)
T PRK14192 157 LAGKHAVVVGRSAILGKPM--AMMLLNANATVTICHSR------TQNLPELVKQADIIVGA 209 (283)
T ss_pred CCCCEEEEECCcHHHHHHH--HHHHHhCCCEEEEEeCC------chhHHHHhccCCEEEEc
Confidence 3567788888887666654 34556667777766642 23344555555544433
No 431
>PF08859 DGC: DGC domain; InterPro: IPR014958 This protein appears to be a zinc binding domain from the conservation of four potential chelating cysteines. The protein is named after a conserved central motif, the function is unknown.
Probab=22.58 E-value=3.1e+02 Score=21.68 Aligned_cols=49 Identities=20% Similarity=0.215 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCCeEEEEecCC
Q 020510 250 VGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGF 300 (325)
Q Consensus 250 ~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe~~ 300 (325)
-..+.+|+-+|.++|. ...+-+.-+- -+.+.+.+.++...++|++|-=.
T Consensus 13 Gqla~~aA~~l~~~~~-~~~~Cla~v~-~~~~~~~~~a~~~~~iIaIDGC~ 61 (110)
T PF08859_consen 13 GQLANQAAVELTREGP-GEMSCLAGVG-AGVEGLVKSARSARPIIAIDGCP 61 (110)
T ss_pred hHHHHHHHHHHHHcCC-eeEEechhhh-cCcHHHHHHHhcCCceEEECCCH
Confidence 3567788888988875 4444444332 24566778888888899886443
No 432
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=22.53 E-value=4.5e+02 Score=24.93 Aligned_cols=24 Identities=8% Similarity=0.025 Sum_probs=14.6
Q ss_pred CCCHHHHHHHHhCCCeEEEEecCC
Q 020510 277 PLDRSTINASVRKTNRLVTVEEGF 300 (325)
Q Consensus 277 P~d~~~l~~~~~~~~~vvvvEe~~ 300 (325)
.+|.+.|.+.+++++.++++|+-.
T Consensus 156 ~~~~~~I~~la~~~g~~~ivD~a~ 179 (382)
T TIGR03403 156 IFPIKEIGEICKERGVLFHTDAVQ 179 (382)
T ss_pred ccCHHHHHHHHHHcCCEEEEechh
Confidence 356667777777666555555543
No 433
>PRK12753 transketolase; Reviewed
Probab=22.43 E-value=6.8e+02 Score=26.42 Aligned_cols=74 Identities=9% Similarity=0.065 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhhccccCCCCccCC-EEEEeCC-CCCCCCCCCc---chHHHHHHhcCCCcEEEeeCC---HHHHHHHHHH
Q 020510 122 QAIDHIINSAAKSNYMSSGQISVP-IVFRGPN-GAAAGVGAQH---SHCYAAWYASVPGLKVLSPYS---SEDARGLLKA 193 (325)
Q Consensus 122 ra~dqi~~~~a~~~~~~~~~~~~p-vv~~~~~-G~~~g~G~tH---s~~~~a~~~~iP~~~V~~P~d---~~e~~~~l~~ 193 (325)
..+|.+.. ++. .++| ++++..+ +.. -+|.++ +......+++. |+.++.+-| ..++.++++.
T Consensus 162 ~~~EA~~~-A~~--------~kL~nLi~ivd~N~~~-i~~~~~~~~~~~~~~~f~a~-Gw~~~~~vDGhD~~~i~~a~~~ 230 (663)
T PRK12753 162 ISHEVCSL-AGT--------LGLGKLIGFYDHNGIS-IDGETEGWFTDDTAKRFEAY-HWHVIHEIDGHDPQAIKEAILE 230 (663)
T ss_pred HHHHHHHH-HHH--------HCCCCEEEEEECCCCc-CCCChhhhcChhHHHHHHHc-CCeEEceeCCCCHHHHHHHHHH
Confidence 56676643 453 5776 5544433 322 223333 23334677877 888875444 4555566666
Q ss_pred hHhC-CCcEEEEeC
Q 020510 194 AIRD-PDPVVFLEN 206 (325)
Q Consensus 194 a~~~-~~Pv~ir~~ 206 (325)
+.+. ++|++|...
T Consensus 231 a~~~~~~P~~I~~~ 244 (663)
T PRK12753 231 AQSVKDKPSLIICR 244 (663)
T ss_pred HHHCCCCeEEEEEE
Confidence 6654 679998643
No 434
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=22.30 E-value=2.5e+02 Score=18.73 Aligned_cols=57 Identities=16% Similarity=0.101 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCCe--EEEEecCCCCCCHHH
Q 020510 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNR--LVTVEEGFPQHGVGA 307 (325)
Q Consensus 248 ~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~--vvvvEe~~~~GGlg~ 307 (325)
.....+.++...|++.+++...+|+..-.. -.+.+.+.. .... ++++ ++...||+..
T Consensus 8 ~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~-~~~~l~~~~-~~~~~P~~~~-~~~~igg~~~ 66 (72)
T cd02066 8 STCPYCKRAKRLLESLGIEFEEIDILEDGE-LREELKELS-GWPTVPQIFI-NGEFIGGYDD 66 (72)
T ss_pred CCCHHHHHHHHHHHHcCCcEEEEECCCCHH-HHHHHHHHh-CCCCcCEEEE-CCEEEecHHH
Confidence 335678888888999999999888865321 122333322 2222 4444 5556788743
No 435
>PRK12831 putative oxidoreductase; Provisional
Probab=22.28 E-value=2.5e+02 Score=28.05 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=30.9
Q ss_pred eeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCC
Q 020510 236 REGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLD 279 (325)
Q Consensus 236 ~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d 279 (325)
..|++++||+.|. .++++|..|...|.++.++..+.-..++
T Consensus 279 ~~gk~VvVIGgG~---va~d~A~~l~r~Ga~Vtlv~r~~~~~m~ 319 (464)
T PRK12831 279 KVGKKVAVVGGGN---VAMDAARTALRLGAEVHIVYRRSEEELP 319 (464)
T ss_pred cCCCeEEEECCcH---HHHHHHHHHHHcCCEEEEEeecCcccCC
Confidence 3578999999995 5667778888889999999876543343
No 436
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=22.21 E-value=2.1e+02 Score=26.53 Aligned_cols=25 Identities=12% Similarity=0.053 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEEee
Q 020510 249 IVGLSLKAAEILAKEGISAEVINLR 273 (325)
Q Consensus 249 ~~~~a~~Aa~~L~~~Gi~~~Vi~~~ 273 (325)
.+.++++.++..++.|.+.-++-.+
T Consensus 79 ~t~~~i~~a~~a~~~Gad~v~~~pP 103 (289)
T cd00951 79 GTATAIAYAQAAEKAGADGILLLPP 103 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCC
Confidence 3444444444444444444444333
No 437
>PRK14938 Ser-tRNA(Thr) hydrolase; Provisional
Probab=22.10 E-value=6.6e+02 Score=24.76 Aligned_cols=58 Identities=26% Similarity=0.276 Sum_probs=37.3
Q ss_pred CcEEEEEechh-HHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHh-CCCeEEEEecC
Q 020510 239 KDVTITAFSKI-VGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVR-KTNRLVTVEEG 299 (325)
Q Consensus 239 ~dv~Iia~G~~-~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~-~~~~vvvvEe~ 299 (325)
.++.|+..+.. ...|++.++.|+++|+.+.+ |... +.+. +.++.+-+ +...++++.+.
T Consensus 275 ~qV~IIpl~eel~e~AlkLA~eLR~aGIrVei-Dl~s-rSLg-KQiK~AdK~GaPfvIIIGed 334 (387)
T PRK14938 275 IQVRILPVKKDFLDFSIQVAERLRKEGIRVNV-DDLD-DSLG-NKIRRAGTEWIPFVIIIGER 334 (387)
T ss_pred ceEEEEEeChHHHHHHHHHHHHHHHCCCEEEE-ECCC-CCHH-HHHHHHHHcCCCEEEEECch
Confidence 46788888754 46889999999999999977 3332 3333 33444433 34456666643
No 438
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=22.08 E-value=1.6e+02 Score=22.56 Aligned_cols=30 Identities=27% Similarity=0.287 Sum_probs=18.7
Q ss_pred EEEEechhHHHH----HHHHHHHHhcCCcEEEEE
Q 020510 242 TITAFSKIVGLS----LKAAEILAKEGISAEVIN 271 (325)
Q Consensus 242 ~Iia~G~~~~~a----~~Aa~~L~~~Gi~~~Vi~ 271 (325)
++++||+.+... .+.-+.|+++|++++|..
T Consensus 5 ILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~ 38 (94)
T PRK10310 5 IIVACGGAVATSTMAAEEIKELCQSHNIPVELIQ 38 (94)
T ss_pred EEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 345556554332 344456678899998877
No 439
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=22.08 E-value=4.9e+02 Score=22.00 Aligned_cols=71 Identities=18% Similarity=0.164 Sum_probs=40.1
Q ss_pred cEEEEEec-hhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCC---C-eEEEEecCCCCCCHHHHHHHHH
Q 020510 240 DVTITAFS-KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKT---N-RLVTVEEGFPQHGVGAEIWCAF 313 (325)
Q Consensus 240 dv~Iia~G-~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~---~-~vvvvEe~~~~GGlg~~v~~~l 313 (325)
++.||+-| +-...+.++++.|++-|+.+++ .+.+..--+.+ +.+.++.. + ++++.=-+. .+.|...|+...
T Consensus 2 ~V~Ii~gs~SD~~~~~~a~~~L~~~gi~~~~-~V~saHR~p~~-l~~~~~~~~~~~~~viIa~AG~-~a~Lpgvva~~t 77 (150)
T PF00731_consen 2 KVAIIMGSTSDLPIAEEAAKTLEEFGIPYEV-RVASAHRTPER-LLEFVKEYEARGADVIIAVAGM-SAALPGVVASLT 77 (150)
T ss_dssp EEEEEESSGGGHHHHHHHHHHHHHTT-EEEE-EE--TTTSHHH-HHHHHHHTTTTTESEEEEEEES-S--HHHHHHHHS
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHHcCCCEEE-EEEeccCCHHH-HHHHHHHhccCCCEEEEEECCC-cccchhhheecc
Confidence 45555433 5678999999999999988775 55555444444 34455433 1 344443333 567777776544
No 440
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=22.05 E-value=2.2e+02 Score=28.28 Aligned_cols=35 Identities=20% Similarity=0.304 Sum_probs=27.0
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeee
Q 020510 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRS 274 (325)
Q Consensus 237 ~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~ 274 (325)
++.+++|++.|. ..+++|+.|.+.|.++.++|...
T Consensus 15 ~~~~v~viG~G~---~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 15 QGLRVVVAGLGV---SGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEeCCc
Confidence 456789998887 34456788888999999998653
No 441
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=21.83 E-value=9.1e+02 Score=25.04 Aligned_cols=141 Identities=16% Similarity=0.146 Sum_probs=82.8
Q ss_pred HHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeeEEeccccc-HHHHHHH
Q 020510 47 LDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFN-FSMQAID 125 (325)
Q Consensus 47 L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GIaE~~~vg~A~GlA~~G~~p~v~~~~~~-f~~ra~d 125 (325)
+.+|.+..-+=+|+++-.+ |+ -++-.+ .+. ++--.-+=|.|-++-=+|.|+|..-.+|++-+..|. ..--.|-
T Consensus 15 ~eeL~r~GV~~vvicPGSR-ST---PLala~-~~~-~~i~~hv~~DERsagFfALGlAKas~rPVavi~TSGTA~ANl~P 88 (566)
T COG1165 15 LEELARLGVRDVVICPGSR-ST---PLALAA-AAH-DAITVHVHIDERSAGFFALGLAKASKRPVAVICTSGTAVANLYP 88 (566)
T ss_pred HHHHHHcCCcEEEECCCCC-Cc---HHHHHH-Hhc-CCeEEEEecccchHHHHHHhhhhhcCCCEEEEEcCcchhhhccH
Confidence 3445556678888987432 22 122222 234 333345678999999999999999988876544443 2333334
Q ss_pred HHHHHHhhccccCCCCccCCEEEEeCCCCC--CCCCCCcchHH--HHHHhcCCCcEE--EeeCCHHHHHHHHHHhHh---
Q 020510 126 HIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGAQHSHCY--AAWYASVPGLKV--LSPYSSEDARGLLKAAIR--- 196 (325)
Q Consensus 126 qi~~~~a~~~~~~~~~~~~pvv~~~~~G~~--~g~G~tHs~~~--~a~~~~iP~~~V--~~P~d~~e~~~~l~~a~~--- 196 (325)
.+. .+.+ ..+|+++...|.+. .+-|.- |.+ ..+|.+-|+..+ -.|.+..++...+++...
T Consensus 89 AVi-EA~~--------srvpLIVLTADRP~EL~~~GAn--QaI~Q~~lfgs~v~~~~~L~~P~~~~~~~~~~~~~~~~~~ 157 (566)
T COG1165 89 AVI-EANL--------SRVPLIVLTADRPPELRGCGAN--QAIDQTGLFGSYVRASIDLPLPEDDIEALWYLRTIASAAA 157 (566)
T ss_pred HHH-hhhh--------cCCceEEEeCCCCHHHhcCCCc--hhhhhhhhhcccchhhccCCCCCCCHHHHHHHHHHHHHHH
Confidence 443 3454 57999888776543 222332 333 378887775443 356677776655553222
Q ss_pred ------CCCcEEEE
Q 020510 197 ------DPDPVVFL 204 (325)
Q Consensus 197 ------~~~Pv~ir 204 (325)
..+||=+-
T Consensus 158 ~~a~~~~~GpVHiN 171 (566)
T COG1165 158 QQARTPHAGPVHIN 171 (566)
T ss_pred HhccCCCCCceEec
Confidence 24677764
No 442
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=21.78 E-value=1.9e+02 Score=25.08 Aligned_cols=35 Identities=17% Similarity=0.232 Sum_probs=26.6
Q ss_pred CcEEEEEechh-HHHHHHHHHHHHhcCCcEEEEEee
Q 020510 239 KDVTITAFSKI-VGLSLKAAEILAKEGISAEVINLR 273 (325)
Q Consensus 239 ~dv~Iia~G~~-~~~a~~Aa~~L~~~Gi~~~Vi~~~ 273 (325)
++++|..+|+. +..+.+..+.|++.|.++.|+=-.
T Consensus 2 k~Ill~vtGsiaa~~~~~li~~L~~~g~~V~vv~T~ 37 (182)
T PRK07313 2 KNILLAVSGSIAAYKAADLTSQLTKRGYQVTVLMTK 37 (182)
T ss_pred CEEEEEEeChHHHHHHHHHHHHHHHCCCEEEEEECh
Confidence 45777777754 478889999999889888877544
No 443
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.75 E-value=1.9e+02 Score=27.38 Aligned_cols=51 Identities=29% Similarity=0.406 Sum_probs=32.3
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCCeEEE
Q 020510 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVT 295 (325)
Q Consensus 237 ~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvv 295 (325)
+|+++++|+.|..+...+ +..|.++|..+.+++-++- .+.+.+++.+-|++
T Consensus 158 ~Gk~V~vIG~s~ivG~Pm--A~~L~~~gatVtv~~~~t~------~l~e~~~~ADIVIs 208 (301)
T PRK14194 158 TGKHAVVIGRSNIVGKPM--AALLLQAHCSVTVVHSRST------DAKALCRQADIVVA 208 (301)
T ss_pred CCCEEEEECCCCccHHHH--HHHHHHCCCEEEEECCCCC------CHHHHHhcCCEEEE
Confidence 577888888876665554 3456677888888876552 24445555554443
No 444
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=21.74 E-value=1.3e+02 Score=29.94 Aligned_cols=32 Identities=31% Similarity=0.318 Sum_probs=0.0
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEE
Q 020510 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVIN 271 (325)
Q Consensus 237 ~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~ 271 (325)
.+.+++||+.| .-.+.||..|.+.|.++.|++
T Consensus 132 ~~~~V~IIG~G---~aGl~aA~~l~~~G~~V~vie 163 (449)
T TIGR01316 132 THKKVAVIGAG---PAGLACASELAKAGHSVTVFE 163 (449)
T ss_pred CCCEEEEECcC---HHHHHHHHHHHHCCCcEEEEe
No 445
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=21.72 E-value=4.1e+02 Score=26.51 Aligned_cols=60 Identities=23% Similarity=0.258 Sum_probs=31.0
Q ss_pred ccCCEEEEeCC-CCCCCCCCC-----cchHHHHHHh--cCCCcEEEeeCCHHHHHHH----HHHhHhCCCcEEEE
Q 020510 142 ISVPIVFRGPN-GAAAGVGAQ-----HSHCYAAWYA--SVPGLKVLSPYSSEDARGL----LKAAIRDPDPVVFL 204 (325)
Q Consensus 142 ~~~pvv~~~~~-G~~~g~G~t-----Hs~~~~a~~~--~iP~~~V~~P~d~~e~~~~----l~~a~~~~~Pv~ir 204 (325)
.++|++++.-+ +.. .|.+ ....+..... .+|++.| .=.|..++... ++.+.+.++|++|-
T Consensus 250 ~~LPvIfVV~NN~ya--ig~~~~~~t~~~dia~~A~a~G~~~~~V-DG~D~~av~~a~~~A~~~Ar~g~gP~LIe 321 (433)
T PLN02374 250 WKLPIVFVVENNLWA--IGMSHLRATSDPEIWKKGPAFGMPGVHV-DGMDVLKVREVAKEAIERARRGEGPTLVE 321 (433)
T ss_pred hCCCEEEEEeCCCEe--ecceeeeccCCCCHHHHHHhcCCcEEEE-CCCCHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 58998887643 321 1211 1112222222 4676654 44555555544 44444457899985
No 446
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=21.72 E-value=7.1e+02 Score=23.80 Aligned_cols=64 Identities=19% Similarity=0.105 Sum_probs=45.4
Q ss_pred eCCcEEEEEech-----hHHHHHHHHHHHHhcCC-cEEEEEeeec-----------cCCCHHHHHHHHhC--CCeEEEEe
Q 020510 237 EGKDVTITAFSK-----IVGLSLKAAEILAKEGI-SAEVINLRSI-----------RPLDRSTINASVRK--TNRLVTVE 297 (325)
Q Consensus 237 ~G~dv~Iia~G~-----~~~~a~~Aa~~L~~~Gi-~~~Vi~~~~l-----------~P~d~~~l~~~~~~--~~~vvvvE 297 (325)
.|+|+.||.+-. .+-+.+-.++.|++.|. ++.+|=++.- -|+..+.+.+++.. .++|+++|
T Consensus 55 rg~dV~ivqs~~~p~nd~l~eLll~~~alr~~~a~~i~~ViPYl~YaRQDr~~~~~e~isak~vA~ll~~~g~d~vit~D 134 (332)
T PRK00553 55 RNKDVVIFQSTCSPVNDSLMELLIAIDALKRGSAKSITAILPYYGYARQDRKTAGREPITSKLVADLLTKAGVTRVTLTD 134 (332)
T ss_pred CCCEEEEEcCCCCCCchHHHHHHHHHHHHHHcCCCeEEEEeeccccchhhcccCCCCCccHHHHHHHHHhcCCCEEEEEe
Confidence 378899988743 34566677788888776 4666655432 26777778888875 46899999
Q ss_pred cCC
Q 020510 298 EGF 300 (325)
Q Consensus 298 e~~ 300 (325)
-|.
T Consensus 135 lH~ 137 (332)
T PRK00553 135 IHS 137 (332)
T ss_pred CCh
Confidence 996
No 447
>PRK06136 uroporphyrin-III C-methyltransferase; Reviewed
Probab=21.70 E-value=1.1e+02 Score=27.48 Aligned_cols=13 Identities=8% Similarity=-0.064 Sum_probs=8.4
Q ss_pred HHHHHHHHcCCCc
Q 020510 306 GAEIWCAFFPPAW 318 (325)
Q Consensus 306 g~~v~~~l~~~~~ 318 (325)
...+++.|.+.|+
T Consensus 177 ~~~i~~~L~~~g~ 189 (249)
T PRK06136 177 LPYIAAQLLAAGR 189 (249)
T ss_pred HHHHHHHHHHcCC
Confidence 3577777766655
No 448
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=21.58 E-value=1.8e+02 Score=25.72 Aligned_cols=38 Identities=18% Similarity=0.118 Sum_probs=28.2
Q ss_pred eCCcEEEEEechhH-HH-HHHHHHHHHhcCCcEEEEEeee
Q 020510 237 EGKDVTITAFSKIV-GL-SLKAAEILAKEGISAEVINLRS 274 (325)
Q Consensus 237 ~G~dv~Iia~G~~~-~~-a~~Aa~~L~~~Gi~~~Vi~~~~ 274 (325)
+|+.+++--+|+.. .. +.+.++.|.+.|.++.|+=-+.
T Consensus 4 ~~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~a 43 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYT 43 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHh
Confidence 35667777777655 56 5899999999999988875443
No 449
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=21.42 E-value=3.4e+02 Score=26.01 Aligned_cols=40 Identities=18% Similarity=0.259 Sum_probs=28.6
Q ss_pred HHHHHhcCCCcEEEee---CCHHHHHHHHHHhHhC-CCcEEEEeC
Q 020510 166 YAAWYASVPGLKVLSP---YSSEDARGLLKAAIRD-PDPVVFLEN 206 (325)
Q Consensus 166 ~~a~~~~iP~~~V~~P---~d~~e~~~~l~~a~~~-~~Pv~ir~~ 206 (325)
...-+++. |+.|+.. .|.+++..+++++-.. +.|++|...
T Consensus 198 ~~~k~~a~-Gw~v~~v~dGhd~~~i~~A~~~a~~~~~kP~~Ii~~ 241 (332)
T PF00456_consen 198 IAKKFEAF-GWNVIEVCDGHDVEAIYAAIEEAKASKGKPTVIIAR 241 (332)
T ss_dssp HHHHHHHT-T-EEEEEEETTBHHHHHHHHHHHHHSTSS-EEEEEE
T ss_pred HHHHHHHh-hhhhcccccCcHHHHHHHHHHHHHhcCCCCceeecc
Confidence 34678888 8888887 6777777888887765 689998754
No 450
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=21.36 E-value=1e+02 Score=27.24 Aligned_cols=35 Identities=0% Similarity=0.029 Sum_probs=22.3
Q ss_pred HHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcCCCc
Q 020510 280 RSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFPPAW 318 (325)
Q Consensus 280 ~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~~~~ 318 (325)
.+.+..+++....+++++... .+ ..+++.|.+.|+
T Consensus 145 ~~~l~~~~~~~~~~vi~~~~~---~~-~~i~~~L~~~g~ 179 (229)
T TIGR01465 145 GEKLADLAKHGATMAIFLSAH---IL-DKVVKELIEGGY 179 (229)
T ss_pred hHHHHHHhcCCCeEEEECcHH---HH-HHHHHHHHHcCc
Confidence 455666665556778886542 23 677777776665
No 451
>PRK13984 putative oxidoreductase; Provisional
Probab=21.35 E-value=1.2e+02 Score=31.28 Aligned_cols=34 Identities=29% Similarity=0.305 Sum_probs=27.7
Q ss_pred eeCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEe
Q 020510 236 REGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINL 272 (325)
Q Consensus 236 ~~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~ 272 (325)
+.+.+++||+.| .-.+.|+..|++.|.++.|++-
T Consensus 281 ~~~~~v~IIGaG---~aGl~aA~~L~~~G~~v~vie~ 314 (604)
T PRK13984 281 KKNKKVAIVGSG---PAGLSAAYFLATMGYEVTVYES 314 (604)
T ss_pred cCCCeEEEECCC---HHHHHHHHHHHHCCCeEEEEec
Confidence 456789999987 4567788889999999999964
No 452
>PRK12342 hypothetical protein; Provisional
Probab=21.34 E-value=3.6e+02 Score=24.81 Aligned_cols=75 Identities=15% Similarity=0.176 Sum_probs=33.3
Q ss_pred CCcEEEEEechhHHHHHHH-HHHHHhcCCc-EEEEEeeeccCCCH----HHHHHHHhCCC-eEEEEecCC---CCCCHHH
Q 020510 238 GKDVTITAFSKIVGLSLKA-AEILAKEGIS-AEVINLRSIRPLDR----STINASVRKTN-RLVTVEEGF---PQHGVGA 307 (325)
Q Consensus 238 G~dv~Iia~G~~~~~a~~A-a~~L~~~Gi~-~~Vi~~~~l~P~d~----~~l~~~~~~~~-~vvvvEe~~---~~GGlg~ 307 (325)
|.++++++.|.--..+.+. .+.|. -|.+ +-+|.-+.+...|. ..|...+++.+ .+|+.=+.+ .+|.+|.
T Consensus 51 g~~Vtvls~Gp~~a~~~~l~r~ala-mGaD~avli~d~~~~g~D~~ata~~La~~i~~~~~DLVl~G~~s~D~~tgqvg~ 129 (254)
T PRK12342 51 GDEIAALTVGGSLLQNSKVRKDVLS-RGPHSLYLVQDAQLEHALPLDTAKALAAAIEKIGFDLLLFGEGSGDLYAQQVGL 129 (254)
T ss_pred CCEEEEEEeCCChHhHHHHHHHHHH-cCCCEEEEEecCccCCCCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCCCCHHH
Confidence 5567777777653222211 11221 2443 23333234444454 34555555421 233333322 2355666
Q ss_pred HHHHHH
Q 020510 308 EIWCAF 313 (325)
Q Consensus 308 ~v~~~l 313 (325)
.+++.|
T Consensus 130 ~lA~~L 135 (254)
T PRK12342 130 LLGELL 135 (254)
T ss_pred HHHHHh
Confidence 777666
No 453
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=21.32 E-value=1.6e+02 Score=23.57 Aligned_cols=50 Identities=10% Similarity=0.152 Sum_probs=24.0
Q ss_pred cEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCCeEEEEe
Q 020510 240 DVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVE 297 (325)
Q Consensus 240 dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvE 297 (325)
|..+|.+|.. --..+++.|++.|..+.|+-. ..-..+.|.+.+ ..++.+|
T Consensus 97 d~ivLvSgD~--Df~~~v~~l~~~g~~V~v~~~---~~~~s~~L~~~a---d~f~~~~ 146 (146)
T PF01936_consen 97 DTIVLVSGDS--DFAPLVRKLRERGKRVIVVGA---EDSASEALRSAA---DEFISIE 146 (146)
T ss_dssp SEEEEE---G--GGHHHHHHHHHH--EEEEEE----GGGS-HHHHHHS---SEEEE--
T ss_pred CEEEEEECcH--HHHHHHHHHHHcCCEEEEEEe---CCCCCHHHHHhc---CEEEeCC
Confidence 6667777742 233455667778999999884 223344455443 4556554
No 454
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=21.26 E-value=56 Score=25.84 Aligned_cols=59 Identities=15% Similarity=0.288 Sum_probs=36.5
Q ss_pred HHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhCCCeEEEEecCCCCCCH--HHHHHHHHcCCCc
Q 020510 256 AAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGV--GAEIWCAFFPPAW 318 (325)
Q Consensus 256 Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGl--g~~v~~~l~~~~~ 318 (325)
|+..|...|. ++..++.=|..+.|++-++++..+=|+-.-++.|-| |+.|...+.++|=
T Consensus 36 ~vqiL~~~g~----v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEfvGG~DIv~Em~q~GE 96 (105)
T COG0278 36 AVQILSACGV----VDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEFVGGCDIVREMYQSGE 96 (105)
T ss_pred HHHHHHHcCC----cceeEEeeccCHHHHhccHhhcCCCCCceeeECCEEeccHHHHHHHHHcch
Confidence 4556776674 344444445567789999988765555555544443 4677767776653
No 455
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=21.21 E-value=6.5e+02 Score=23.10 Aligned_cols=63 Identities=17% Similarity=0.082 Sum_probs=42.2
Q ss_pred cEEEEEechh--HHHHHHHHHHHHhcCC-cEEEEEe-eecc-C-----CCHHHHHHHHhCCCeEEEEe-cCCCCCC
Q 020510 240 DVTITAFSKI--VGLSLKAAEILAKEGI-SAEVINL-RSIR-P-----LDRSTINASVRKTNRLVTVE-EGFPQHG 304 (325)
Q Consensus 240 dv~Iia~G~~--~~~a~~Aa~~L~~~Gi-~~~Vi~~-~~l~-P-----~d~~~l~~~~~~~~~vvvvE-e~~~~GG 304 (325)
+-+++..|.. ..+...|++.+.+.|. ++-+... .+-+ | +|...|..+-+.++.-|.++ +|. +|
T Consensus 133 kPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~~pV~~ds~Hs--~G 206 (260)
T TIGR01361 133 KPVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKETHLPIIVDPSHA--AG 206 (260)
T ss_pred CcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhhCCCEEEcCCCC--CC
Confidence 4678899954 7899999999998876 6777765 3222 3 45556654444456567775 665 55
No 456
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=21.14 E-value=1.9e+02 Score=25.00 Aligned_cols=34 Identities=15% Similarity=0.157 Sum_probs=25.1
Q ss_pred cEEEEEechh-HHHHHHHHHHHHhcCCcEEEEEee
Q 020510 240 DVTITAFSKI-VGLSLKAAEILAKEGISAEVINLR 273 (325)
Q Consensus 240 dv~Iia~G~~-~~~a~~Aa~~L~~~Gi~~~Vi~~~ 273 (325)
+++|..+|+. +..+.+..+.|++.|.++.||=-.
T Consensus 2 ~I~lgvtGs~~a~~~~~ll~~L~~~g~~V~vi~T~ 36 (177)
T TIGR02113 2 KILLAVTGSIAAYKAADLTSQLTKLGYDVTVLMTQ 36 (177)
T ss_pred EEEEEEcCHHHHHHHHHHHHHHHHCCCEEEEEECh
Confidence 4666667754 468888899998889888777543
No 457
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=21.11 E-value=5.6e+02 Score=22.77 Aligned_cols=43 Identities=12% Similarity=0.116 Sum_probs=24.7
Q ss_pred ccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHHcCCCccc
Q 020510 275 IRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAFFPPAWLI 320 (325)
Q Consensus 275 l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l~~~~~~~ 320 (325)
+.+++.+.+.+.++..+-++ .-.. ..|++..+.++++-...++
T Consensus 264 ~g~~~~~~~~~~~~~ad~~i-~~~~--~~~~~~~~~Ea~~~G~pvI 306 (377)
T cd03798 264 LGAVPHEEVPAYYAAADVFV-LPSL--REGFGLVLLEAMACGLPVV 306 (377)
T ss_pred eCCCCHHHHHHHHHhcCeee-cchh--hccCChHHHHHHhcCCCEE
Confidence 34566677777777765433 2221 2567777777776544333
No 458
>cd06066 H2MP_NAD-link-bidir Endopeptidases that belong to the bidirectional NAD-linked hydrogenase group. This group of endopeptidases are highly specific carboxyl-terminal protease (HoxW protease) which releases a 24-amino-acid peptide from HoxH prior to progression of subunit assembly. These bidirectional hydrogenases are heteropentamers encoded by the hox (hydrogen oxidation) genes, in which complex HoxEFU shows the diaphorase activity, and HoxYH constitutes the NiFe-hydrogenase.
Probab=21.02 E-value=2.3e+02 Score=23.15 Aligned_cols=52 Identities=13% Similarity=0.263 Sum_probs=30.1
Q ss_pred EEEechhH----HHHHHHHHHHHhc-CCcEEEEEeeeccCCCHHHHHHHHhCCCeEEEEec
Q 020510 243 ITAFSKIV----GLSLKAAEILAKE-GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEE 298 (325)
Q Consensus 243 Iia~G~~~----~~a~~Aa~~L~~~-Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe 298 (325)
|++.|+.+ .....+++.|+++ .-++.++|..+.- + +.+ ..+...++++++|=
T Consensus 2 VlGvGN~l~~DDGvG~~v~~~L~~~~~~~v~~id~g~~g-~--~l~-~~l~~~d~vIivDA 58 (139)
T cd06066 2 VIGYGNPLRGDDGLGPAVAERIEEWLLPGVEVLAVHQLT-P--ELA-EDLAGADRVIFIDA 58 (139)
T ss_pred EEEeCCccccccchhHHHHHHHHhhCCCCeEEEEcCCCC-H--HHH-HHhcCCCEEEEEEc
Confidence 44555444 2445566666654 3457788877752 2 222 34557778888875
No 459
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=20.87 E-value=6.1e+02 Score=25.54 Aligned_cols=71 Identities=13% Similarity=0.102 Sum_probs=40.7
Q ss_pred CcEEEEE---echhHHHHHHHHHHHHhc--CCcEEEEEeeeccCCCHHHHHHHHhCCCeEEEEecCCCCCCHHHHHHHHH
Q 020510 239 KDVTITA---FSKIVGLSLKAAEILAKE--GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEIWCAF 313 (325)
Q Consensus 239 ~dv~Iia---~G~~~~~a~~Aa~~L~~~--Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe~~~~GGlg~~v~~~l 313 (325)
++++|+- ||++-..|..+++-+++. |+++.+.++... |.+.+...+.+++.|++- --+..++.-..+...+
T Consensus 252 ~kv~IvY~S~~GnTe~mA~~ia~gl~~~g~gv~v~~~~v~~~---~~~~i~~~~~~ad~vilG-spT~~~~~~p~~~~fl 327 (479)
T PRK05452 252 DRITIFYDTMSNNTRMMADAIAQGIAEVDPRVAVKIFNVARS---DKNEILTNVFRSKGVLVG-SSTMNNVMMPKIAGLL 327 (479)
T ss_pred CcEEEEEECCccHHHHHHHHHHHHHHhhCCCceEEEEECCCC---CHHHHHhHHhhCCEEEEE-CCccCCcchHHHHHHH
Confidence 4565553 355556677777777765 577788877644 555554444456554443 3333556544555444
No 460
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=20.85 E-value=3.3e+02 Score=23.88 Aligned_cols=33 Identities=33% Similarity=0.335 Sum_probs=24.6
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEe
Q 020510 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINL 272 (325)
Q Consensus 237 ~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~ 272 (325)
+|+.++||+.|.+.. ..++.|.+.|.++.||+.
T Consensus 9 ~~k~vLVIGgG~va~---~ka~~Ll~~ga~V~VIs~ 41 (202)
T PRK06718 9 SNKRVVIVGGGKVAG---RRAITLLKYGAHIVVISP 41 (202)
T ss_pred CCCEEEEECCCHHHH---HHHHHHHHCCCeEEEEcC
Confidence 567899999888764 334557678889999874
No 461
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=20.84 E-value=1.4e+02 Score=26.95 Aligned_cols=29 Identities=28% Similarity=0.296 Sum_probs=0.0
Q ss_pred cEEEEEechhHHHHHHHHHHHHhcCCcEEEEE
Q 020510 240 DVTITAFSKIVGLSLKAAEILAKEGISAEVIN 271 (325)
Q Consensus 240 dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~ 271 (325)
|++||+.| .-.+.||..|.+.|.++.|++
T Consensus 2 dvvIIG~G---~aGl~aA~~l~~~g~~v~lie 30 (300)
T TIGR01292 2 DVIIIGAG---PAGLTAAIYAARANLKTLIIE 30 (300)
T ss_pred cEEEECCC---HHHHHHHHHHHHCCCCEEEEe
No 462
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=20.83 E-value=1.3e+02 Score=29.97 Aligned_cols=33 Identities=30% Similarity=0.404 Sum_probs=26.4
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEe
Q 020510 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINL 272 (325)
Q Consensus 237 ~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~ 272 (325)
.+.+++||+.|. -.+.||..|.+.|.++.|++-
T Consensus 142 ~~~~VvIIGaGp---AGl~aA~~l~~~G~~V~vie~ 174 (471)
T PRK12810 142 TGKKVAVVGSGP---AGLAAADQLARAGHKVTVFER 174 (471)
T ss_pred CCCEEEEECcCH---HHHHHHHHHHhCCCcEEEEec
Confidence 467899999983 346677788888999999984
No 463
>PF01910 DUF77: Domain of unknown function DUF77; InterPro: IPR002767 This entry contains several hypothetical proteins of unknown function found in archaebacteria, eukaryotes and eubacteria. The structures of YBL001c from Saccharomyces cerevisiae and its homologue MTH1187 from the archaea Methanobacterium thermoautotrophicum have been determined []. These proteins have a ferredoxin-like alpha/beta sandwich structure with anti-parallel beta-sheets. Generally, they have two domains that form a single beta-sheet dimer, where two dimers pack sheet-to-sheet into a tetramer, some proteins having an extra C-terminal helix. ; PDB: 1LXJ_A 1YQH_A 2EKY_G 2EPI_A 1VK8_D 2IBO_C 1LXN_B.
Probab=20.83 E-value=1.9e+02 Score=22.18 Aligned_cols=48 Identities=13% Similarity=0.243 Sum_probs=34.4
Q ss_pred EEEEEec----hhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHh
Q 020510 241 VTITAFS----KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVR 288 (325)
Q Consensus 241 v~Iia~G----~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~ 288 (325)
+.++-.| +....+-+|.+.|++.|++..+=-+.|.---|.+.+.++++
T Consensus 3 i~v~P~g~~~~s~~~~V~~~i~~i~~sgl~y~v~pm~T~iEGe~dev~~~i~ 54 (92)
T PF01910_consen 3 ISVIPIGTGGESVSAYVAEAIEVIKESGLKYEVGPMGTTIEGELDEVMALIK 54 (92)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHTSSSEEEEETTEEEEEEEHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEcCCccEEEecHHHHHHHHH
Confidence 4455554 44567778888899999999998888886666776666555
No 464
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=20.78 E-value=5.7e+02 Score=23.53 Aligned_cols=28 Identities=11% Similarity=0.055 Sum_probs=20.0
Q ss_pred CCHHHHHHHHhCCCeEEEEecCCCCCCH
Q 020510 278 LDRSTINASVRKTNRLVTVEEGFPQHGV 305 (325)
Q Consensus 278 ~d~~~l~~~~~~~~~vvvvEe~~~~GGl 305 (325)
+|.+.|.+++++++.++++|+-...|+.
T Consensus 142 ~~~~~i~~l~~~~~~~livD~~~s~g~~ 169 (355)
T TIGR03301 142 NPLEAIAKVARSHGAVLIVDAMSSFGAI 169 (355)
T ss_pred hHHHHHHHHHHHcCCEEEEEeccccCCc
Confidence 6778888888888877777765444543
No 465
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=20.70 E-value=1.5e+02 Score=21.26 Aligned_cols=31 Identities=13% Similarity=0.057 Sum_probs=25.4
Q ss_pred EEEEEechhHHHHHHHHHHHHhc-CCcEEEEE
Q 020510 241 VTITAFSKIVGLSLKAAEILAKE-GISAEVIN 271 (325)
Q Consensus 241 v~Iia~G~~~~~a~~Aa~~L~~~-Gi~~~Vi~ 271 (325)
+.++++|.....+......|.+. |+++.++.
T Consensus 1 i~i~g~G~s~~~a~~~~~~l~~~~~~~~~~~~ 32 (87)
T cd04795 1 IFVIGIGGSGAIAAYFALELLELTGIEVVALI 32 (87)
T ss_pred CEEEEcCHHHHHHHHHHHHHhcccCCceEEeC
Confidence 36889999999999999999887 87776543
No 466
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=20.68 E-value=1.9e+02 Score=22.53 Aligned_cols=34 Identities=12% Similarity=0.037 Sum_probs=27.5
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCcEEEE
Q 020510 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVI 270 (325)
Q Consensus 237 ~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi 270 (325)
+-+.+.++++|.....|.+.+..|+.-|..+..+
T Consensus 12 ~~~~i~i~g~g~s~~~a~~~~~~l~~~~~~~~~~ 45 (139)
T cd05013 12 KARRIYIFGVGSSGLVAEYLAYKLLRLGKPVVLL 45 (139)
T ss_pred hCCEEEEEEcCchHHHHHHHHHHHHHcCCceEEe
Confidence 3467899999999999999999998877755554
No 467
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=20.59 E-value=1.8e+02 Score=24.36 Aligned_cols=66 Identities=9% Similarity=0.017 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhC-----CCeEEEEecCCCCCCHHHHHHHHHcCCCc
Q 020510 249 IVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRK-----TNRLVTVEEGFPQHGVGAEIWCAFFPPAW 318 (325)
Q Consensus 249 ~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~-----~~~vvvvEe~~~~GGlg~~v~~~l~~~~~ 318 (325)
......+|.+.|++.||+.+.+|+..-..+ .+.|.+.+.. +-..|.+...+ .||..+... |.++|-
T Consensus 15 t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~-~~EL~~~~g~~~~~~tvPqVFI~G~~-IGG~del~~--L~e~G~ 85 (147)
T cd03031 15 TFEDCNNVRAILESFRVKFDERDVSMDSGF-REELRELLGAELKAVSLPRVFVDGRY-LGGAEEVLR--LNESGE 85 (147)
T ss_pred cChhHHHHHHHHHHCCCcEEEEECCCCHHH-HHHHHHHhCCCCCCCCCCEEEECCEE-EecHHHHHH--HHHcCC
Confidence 457778888899999999999998742212 3345555432 22346676554 577643333 444443
No 468
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=20.51 E-value=1.5e+02 Score=23.98 Aligned_cols=32 Identities=22% Similarity=0.259 Sum_probs=23.0
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCc-EEEEE
Q 020510 237 EGKDVTITAFSKIVGLSLKAAEILAKEGIS-AEVIN 271 (325)
Q Consensus 237 ~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~-~~Vi~ 271 (325)
+++.++||+.|-+...+.. .|.+.|++ +.|++
T Consensus 11 ~~~~vlviGaGg~ar~v~~---~L~~~g~~~i~i~n 43 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAA---ALAALGAKEITIVN 43 (135)
T ss_dssp TTSEEEEESSSHHHHHHHH---HHHHTTSSEEEEEE
T ss_pred CCCEEEEECCHHHHHHHHH---HHHHcCCCEEEEEE
Confidence 3567899999887765544 46666876 88877
No 469
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=20.47 E-value=3.1e+02 Score=28.17 Aligned_cols=148 Identities=15% Similarity=0.059 Sum_probs=74.7
Q ss_pred cccHHHHHHHHHHHHHhcCCcEEEEecCCCCccCccccchhHHHHhCCCceeechh--hHHHHHHHHHHHhccC-CeeEE
Q 020510 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPI--TEAGFTGIGVGAAYYG-LKPVV 112 (325)
Q Consensus 36 ~~s~~~a~~~~L~~l~~~d~~iv~l~~D~~~~~g~~~~~~~~~~~~gp~R~i~~GI--aE~~~vg~A~GlA~~G-~~p~v 112 (325)
.++... +.+.|.+.+..+ ++++ .|.. .. ..-+.-.- |.+|+..+- +=-..+++|.|++++. -++++
T Consensus 384 ~i~~~~-~~~~l~~~l~~~-~~vv--~~~~----~~--~~~~~~~~-~~~~~~~~~~gsmG~~lp~aiGa~la~p~~~vv 452 (569)
T PRK08327 384 PITPAY-LSYCLGEVADEY-DAIV--TEYP----FV--PRQARLNK-PGSYFGDGSAGGLGWALGAALGAKLATPDRLVI 452 (569)
T ss_pred CcCHHH-HHHHHHHhcCcc-ceEE--eccH----HH--HHhcCccC-CCCeeeCCCCCCCCcchHHHHHHhhcCCCCeEE
Confidence 344433 556666666544 4544 3322 11 12222233 677876542 3334456667766663 35566
Q ss_pred ecccccH--HHHHHHHHHHHHhhccccCCCCccCCEEEEeC-C-CCCC---------CCC------CC----c-ch-HHH
Q 020510 113 EFMTFNF--SMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N-GAAA---------GVG------AQ----H-SH-CYA 167 (325)
Q Consensus 113 ~~~~~~f--~~ra~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~-G~~~---------g~G------~t----H-s~-~~~ 167 (325)
++. .+. .+-+.++..+.+.. .++|++++.- + +... +.| .. . .. .+.
T Consensus 453 ~i~-GDG~f~~~~~e~~l~ta~~--------~~l~~~ivv~NN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 523 (569)
T PRK08327 453 ATV-GDGSFIFGVPEAAHWVAER--------YGLPVLVVVFNNGGWLAVKEAVLEVYPEGYAARKGTFPGTDFDPRPDFA 523 (569)
T ss_pred EEe-cCcceeecCcHHHHHHHHH--------hCCCEEEEEEeCcccccchhHHhhhCcccccccccccccccCCCCCCHH
Confidence 554 332 22233443333443 4677666543 2 2221 001 00 0 11 123
Q ss_pred HHHhcCCCcEEEeeCCHHHHHHHHHHhHhC----CCcEEEE
Q 020510 168 AWYASVPGLKVLSPYSSEDARGLLKAAIRD----PDPVVFL 204 (325)
Q Consensus 168 a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~----~~Pv~ir 204 (325)
.+..++ |...+.-.+++|+...++.+++. ++|++|-
T Consensus 524 ~la~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~gp~lie 563 (569)
T PRK08327 524 KIAEAF-GGYGERVEDPEELKGALRRALAAVRKGRRSAVLD 563 (569)
T ss_pred HHHHhC-CCCceEeCCHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 455554 44455557999999999999875 6799884
No 470
>COG4274 Uncharacterized conserved protein [Function unknown]
Probab=20.45 E-value=3.7e+02 Score=21.25 Aligned_cols=47 Identities=15% Similarity=0.152 Sum_probs=32.7
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhC
Q 020510 239 KDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRK 289 (325)
Q Consensus 239 ~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~ 289 (325)
-|++.|.-+.-=..+....=.|...| -+...+|+-||.+...+.+++
T Consensus 56 YD~V~i~EapDda~~~~~~l~l~s~G----nvRt~TL~Afp~~~~~~~lkk 102 (104)
T COG4274 56 YDVVAIVEAPDDAVATRFSLALASRG----NVRTVTLRAFPVDAMLEILKK 102 (104)
T ss_pred ccEEEEEecCCHHHHHHHHHHHHhcC----CeEEEeeccCCHHHHHHHHhh
Confidence 46666666655555555555566555 567788999999998888865
No 471
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=20.40 E-value=2.4e+02 Score=27.15 Aligned_cols=54 Identities=17% Similarity=0.155 Sum_probs=33.5
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCc-EEEEEeeeccCCCHHHHH----HHHhCCCeEE
Q 020510 237 EGKDVTITAFSKIVGLSLKAAEILAKEGIS-AEVINLRSIRPLDRSTIN----ASVRKTNRLV 294 (325)
Q Consensus 237 ~G~dv~Iia~G~~~~~a~~Aa~~L~~~Gi~-~~Vi~~~~l~P~d~~~l~----~~~~~~~~vv 294 (325)
+++.+.||+.|.|...+ ++.|.++|++ +.|.+ |+..+.+.+.+. +...+++-|+
T Consensus 173 ~~k~vLvIGaGem~~l~---a~~L~~~g~~~i~v~n-Rt~~~~~~~~~~~~~~~~~~~~DvVI 231 (338)
T PRK00676 173 KKASLLFIGYSEINRKV---AYYLQRQGYSRITFCS-RQQLTLPYRTVVREELSFQDPYDVIF 231 (338)
T ss_pred cCCEEEEEcccHHHHHH---HHHHHHcCCCEEEEEc-CCccccchhhhhhhhhhcccCCCEEE
Confidence 46789999999998865 4567778865 55544 554444444332 3344555444
No 472
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=20.23 E-value=8.8e+02 Score=25.57 Aligned_cols=56 Identities=20% Similarity=0.220 Sum_probs=31.1
Q ss_pred HHHhcCCcEEEEEeeec--------cCCCHHHHHHHHhC------CCeEEEEecCCCCCCHHHHHHHHHcCCCc
Q 020510 259 ILAKEGISAEVINLRSI--------RPLDRSTINASVRK------TNRLVTVEEGFPQHGVGAEIWCAFFPPAW 318 (325)
Q Consensus 259 ~L~~~Gi~~~Vi~~~~l--------~P~d~~~l~~~~~~------~~~vvvvEe~~~~GGlg~~v~~~l~~~~~ 318 (325)
.|++.|+.+.++++.+. .-+|.+.|.+.+.. .++|+++= + .+| ...+.+.|.+.|+
T Consensus 94 aL~~~Gi~~~~~~~~~P~~~~~~p~~~~~se~Ll~~l~~~~~~~~g~rVLi~r-G--~~g-r~~L~~~L~~~Ga 163 (656)
T PRK06975 94 ALARHGIAAPAHRVIAPDAPADGGEARYDSEALFAEIDAAFGALAGKRVLIVR-G--DGG-REWLAERLREAGA 163 (656)
T ss_pred HHHHcCCCCceeeccccccccCCCCCccchHHHHHhHHHhccCCCCCEEEEEc-C--CCC-cHHHHHHHHHCCC
Confidence 45567888777655443 23677777666553 24666541 1 122 2346666766654
No 473
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=20.04 E-value=2.2e+02 Score=26.65 Aligned_cols=34 Identities=18% Similarity=0.187 Sum_probs=14.4
Q ss_pred CCcEEEEEeeeccCCCHHHHHHHHhCCCeEEEEec
Q 020510 264 GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEE 298 (325)
Q Consensus 264 Gi~~~Vi~~~~l~P~d~~~l~~~~~~~~~vvvvEe 298 (325)
++.+-++|. +=.+++.+.+.++.++...|+-+=|
T Consensus 132 ~lpi~lYn~-~g~~l~~~~l~~L~~~~pni~giK~ 165 (303)
T PRK03620 132 DLGVIVYNR-DNAVLTADTLARLAERCPNLVGFKD 165 (303)
T ss_pred CCCEEEEcC-CCCCCCHHHHHHHHhhCCCEEEEEe
Confidence 344444442 1224444444444434444444443
No 474
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=20.00 E-value=3e+02 Score=23.41 Aligned_cols=59 Identities=15% Similarity=0.118 Sum_probs=37.1
Q ss_pred EEEEechhHHHHHHHHHHHHhcCCcEEEEEeee--ccCCCHHHHHHHHhCCC-eEEEEecCC
Q 020510 242 TITAFSKIVGLSLKAAEILAKEGISAEVINLRS--IRPLDRSTINASVRKTN-RLVTVEEGF 300 (325)
Q Consensus 242 ~Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~--l~P~d~~~l~~~~~~~~-~vvvvEe~~ 300 (325)
.|.-.|..-..+.++++.|+++.-.+.++.... ..+-+.+.+.+.+++++ .+|++=-+.
T Consensus 50 ~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vglG~ 111 (172)
T PF03808_consen 50 RIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVFVGLGA 111 (172)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCC
Confidence 344457777778888899998854555554433 34555666777777664 466664443
No 475
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=20.00 E-value=1.6e+02 Score=27.89 Aligned_cols=29 Identities=24% Similarity=0.379 Sum_probs=26.4
Q ss_pred EEEeeCCHHHHHHHHHHhHhCCCcEEEEe
Q 020510 177 KVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (325)
Q Consensus 177 ~V~~P~d~~e~~~~l~~a~~~~~Pv~ir~ 205 (325)
.++.|.|.+|+..+++++.+.+-|++++-
T Consensus 39 ~vv~p~~~edv~~~l~~a~~~~ip~~v~G 67 (305)
T PRK12436 39 VFVAPTNYDEIQEVIKYANKYNIPVTFLG 67 (305)
T ss_pred EEEecCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 68899999999999999998888999973
No 476
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.
Probab=20.00 E-value=4.5e+02 Score=22.99 Aligned_cols=57 Identities=18% Similarity=0.167 Sum_probs=34.5
Q ss_pred cEEEEEech-------hHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHH-HhCCCeEEEEec
Q 020510 240 DVTITAFSK-------IVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINAS-VRKTNRLVTVEE 298 (325)
Q Consensus 240 dv~Iia~G~-------~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~-~~~~~~vvvvEe 298 (325)
+++||..+. ....+.+.++.|++.|+.+.+ |.+.-+.+-.+ +.+. .+....++++-+
T Consensus 12 qVvIipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~-D~r~~~s~g~K-~~~ae~~GvP~~I~IG~ 76 (202)
T cd00862 12 QVVIVPIGIKDEKREEVLEAADELAERLKAAGIRVHV-DDRDNYTPGWK-FNDWELKGVPLRIEIGP 76 (202)
T ss_pred eEEEEEecCCccchHHHHHHHHHHHHHHHHCCCEEEE-ECCCCCCHhHH-HHHHHhCCCCEEEEECc
Confidence 567777653 456788889999999999987 66543233333 3332 233444444443
No 477
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=20.00 E-value=4.4e+02 Score=22.48 Aligned_cols=66 Identities=17% Similarity=0.117 Sum_probs=35.1
Q ss_pred EEEechhHHHHHHHHHHHHhcCCcEEEEEeeeccCCCHHHHHHHHhC----CCeEEEEecCCCCCCHHHHHHH
Q 020510 243 ITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRK----TNRLVTVEEGFPQHGVGAEIWC 311 (325)
Q Consensus 243 Iia~G~~~~~a~~Aa~~L~~~Gi~~~Vi~~~~l~P~d~~~l~~~~~~----~~~vvvvEe~~~~GGlg~~v~~ 311 (325)
|.++-+-...+.++++.|++-||+.++ .+.+..-.+.+ +.++++. .-.+++.=-+- .+.|...|+.
T Consensus 4 imGS~SD~~~~~~a~~~L~~~gi~~dv-~V~SaHRtp~~-~~~~~~~a~~~g~~viIa~AG~-aa~Lpgvva~ 73 (156)
T TIGR01162 4 IMGSDSDLPTMKKAADILEEFGIPYEL-RVVSAHRTPEL-MLEYAKEAEERGIKVIIAGAGG-AAHLPGMVAA 73 (156)
T ss_pred EECcHhhHHHHHHHHHHHHHcCCCeEE-EEECcccCHHH-HHHHHHHHHHCCCeEEEEeCCc-cchhHHHHHh
Confidence 334446668999999999888886443 33344334443 2334432 22444442222 3445555543
Done!