RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 020510
(325 letters)
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta;
pyruvate_dehydrogenase_complex, human,
multienzyme_complex_component; HET: TPP; 1.90A {Homo
sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B*
3exf_B* 3exg_B 3exh_B* 3exi_B
Length = 341
Score = 524 bits (1351), Expect = 0.0
Identities = 174/285 (61%), Positives = 219/285 (76%)
Query: 25 SNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPE 84
+ ++ Q+ VR+A+N +DEE+ D KVFL+GEEV +Y GAYK+S+GL +KYG +
Sbjct: 3 GSHHHHHHGSLQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDK 62
Query: 85 RVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISV 144
R++DTPI+E GF GI VGAA GL+P+ EFMTFNFSMQAID +INSAAK+ YMS G V
Sbjct: 63 RIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPV 122
Query: 145 PIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204
PIVFRGPNGA+AGV AQHS C+AAWY PGLKV+SP++SEDA+GL+K+AIRD +PVV L
Sbjct: 123 PIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVL 182
Query: 205 ENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEG 264
ENEL+YG F E F +PIGKAKIER+G +T+ + S+ VG L+AA +L+KEG
Sbjct: 183 ENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEG 242
Query: 265 ISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 309
+ EVIN+R+IRP+D TI ASV KTN LVTVE G+PQ GVGAEI
Sbjct: 243 VECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEI 287
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase,
multienzyme complex, oxidoreductase; HET: TDP; 2.0A
{Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2
PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Length = 324
Score = 406 bits (1045), Expect = e-143
Identities = 117/274 (42%), Positives = 163/274 (59%), Gaps = 3/274 (1%)
Query: 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAG 95
QM + +A+ AL E+ DP V + GE+VG G ++ ++GL ++G +RV DTP+ E+G
Sbjct: 2 QMTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESG 61
Query: 96 FTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA 155
G+ +G A G +PV E F F + +D I A+ Y + G+ +PI R P G
Sbjct: 62 IGGLAIGLALQGFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPFGGG 121
Query: 156 AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFP 215
HS A PGLKV+ P + DA+GLL +AIRD DPV+FLE+ LY
Sbjct: 122 VHTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAIRDNDPVIFLEHLKLYRS--- 178
Query: 216 VSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSI 275
EV + + +PIGKA I+REGKD+TI A+ +V SLKAA L KEGISAEV++LR++
Sbjct: 179 FRQEVPEGEYTIPIGKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRTV 238
Query: 276 RPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 309
+PLD TI SV KT R + V+E Q G+ A +
Sbjct: 239 QPLDIETIIGSVEKTGRAIVVQEAQRQAGIAANV 272
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2)
tetramer, structural genomics; HET: TDP; 1.90A {Thermus
thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B*
1umc_B* 1umb_B*
Length = 324
Score = 399 bits (1029), Expect = e-141
Identities = 117/274 (42%), Positives = 170/274 (62%), Gaps = 3/274 (1%)
Query: 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAG 95
M + +ALN ALDEEM+ DP+V ++GE+VG+ G + +++GLL+KYGP+RV+DTP++EA
Sbjct: 3 LMTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAA 62
Query: 96 FTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA 155
G +G A +GL+PV E ++ D +++ AK Y S GQ + P+V R P+G
Sbjct: 63 IVGAALGMAAHGLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPSGGG 122
Query: 156 AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFP 215
G HS A + GLKV++ + DA+GLLKAAIRD DPVVFLE + LY
Sbjct: 123 VRGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAAIRDEDPVVFLEPKRLYRSVK- 181
Query: 216 VSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSI 275
EV + + LPIGKA + REGKD+T+ + ++ L+AA LAK G+SAEV++LR++
Sbjct: 182 --EEVPEEDYTLPIGKAALRREGKDLTLICYGTVMPEVLQAAAELAKAGVSAEVLDLRTL 239
Query: 276 RPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 309
P D + SV KT R+V V + +E+
Sbjct: 240 MPWDYEAVMNSVAKTGRVVLVSDAPRHASFVSEV 273
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase;
2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Length = 369
Score = 379 bits (975), Expect = e-132
Identities = 112/279 (40%), Positives = 164/279 (58%), Gaps = 6/279 (2%)
Query: 31 SSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTP 90
+ V + +A+N AL EEM D +V ++GE+VG+ G + +++GL E++GPERV+DTP
Sbjct: 45 AGVVMMANMAKAINMALHEEMERDERVVVLGEDVGKKGGVFLVTEGLYERFGPERVIDTP 104
Query: 91 ITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG 150
+ E G G +G A GLKPV E +F D ++N AK Y S G P+V R
Sbjct: 105 LNEGGILGFAMGMAMAGLKPVAEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRT 164
Query: 151 PNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLY 210
P G+ G HS+ A + PGL V+ P + +A+GLLKAAIR DPVVFLE ++LY
Sbjct: 165 PVGSGTRGGLYHSNSPEAIFVHTPGLVVVMPSTPYNAKGLLKAAIRGDDPVVFLEPKILY 224
Query: 211 GESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVI 270
EV + + + IGKA++ REG DVT+ + +V +L+AAE + S EV+
Sbjct: 225 RAPR---EEVPEGDYVVEIGKARVAREGDDVTLVTYGAVVHKALEAAE---RVKASVEVV 278
Query: 271 NLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 309
+L+++ PLD T+ SV KT RL+ + G+GAE+
Sbjct: 279 DLQTLNPLDFDTVLKSVSKTGRLIIAHDSPKTGGLGAEV 317
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP
cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas
putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Length = 338
Score = 361 bits (930), Expect = e-125
Identities = 109/290 (37%), Positives = 155/290 (53%), Gaps = 16/290 (5%)
Query: 33 AVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPIT 92
A M + +AL SA+D + D V + G++VG + G ++ ++GL KYG RV D PI+
Sbjct: 1 ATTTMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPIS 60
Query: 93 EAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN 152
E+G G VG YGL+PVVE ++ A D I++ A+ Y S+G+ P+ R P
Sbjct: 61 ESGIVGTAVGMGAYGLRPVVEIQFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPC 120
Query: 153 GAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGE 212
G G HS A + V GL+ + P + DA+GLL A+I DPV+FLE + LY
Sbjct: 121 GGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIASIECDDPVIFLEPKRLYNG 180
Query: 213 SFPVS-------------AEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEI 259
F + V D + +P+ KA I R G DV++ + V ++ AAE
Sbjct: 181 PFDGHHDRPVTPWSKHPHSAVPDGYYTVPLDKAAITRPGNDVSVLTYGTTVYVAQVAAE- 239
Query: 260 LAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 309
+ G+ AEVI+LRS+ PLD TI SV+KT R V V E G GAE+
Sbjct: 240 --ESGVDAEVIDLRSLWPLDLDTIVESVKKTGRCVVVHEATRTCGFGAEL 287
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase,
multi-enzyme complex, acylation, oxidative
decarboxylation, maple syrup urine disease; HET: TDP;
1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB:
1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B*
1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B*
2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Length = 342
Score = 350 bits (901), Expect = e-121
Identities = 96/281 (34%), Positives = 149/281 (53%), Gaps = 6/281 (2%)
Query: 31 SSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTP 90
++M + +++ SALD ++ DP + GE+V + G ++ + GL +KYG +RV +TP
Sbjct: 15 YGQTQKMNLFQSVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTP 73
Query: 91 ITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISV-PIVFR 149
+ E G G G+G A G + E ++ A D I+N AAK Y S + + R
Sbjct: 74 LCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIR 133
Query: 150 GPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELL 209
P G HS A++A PG+KV+ P S A+GLL + I D +P +F E ++L
Sbjct: 134 SPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKIL 193
Query: 210 YGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILA-KEGISAE 268
Y + EV + +P+ +A++ +EG DVT+ A+ V + + A + K G+S E
Sbjct: 194 YRAAA---EEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAKEKLGVSCE 250
Query: 269 VINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 309
VI+LR+I P D TI SV KT RL+ E G +EI
Sbjct: 251 VIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEI 291
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS,
transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Length = 629
Score = 91.0 bits (227), Expect = 2e-20
Identities = 66/242 (27%), Positives = 102/242 (42%), Gaps = 47/242 (19%)
Query: 83 PERVLDTPITE---AGFTGIGVGAAYYGLKPVVE-FMTFNFSMQ-AIDHIINSAAKSNYM 137
P R LD I E G A G++PVV + TF +Q A D +++ A +
Sbjct: 363 PHRYLDVGIAEEVAVTTAA---GMALQGMRPVVAIYSTF---LQRAYDQVLHDVAIEH-- 414
Query: 138 SSGQISVPIVF---RGPNGAAAGV----GAQHSHCY-AAWYASVPGLKVLSPYSSEDARG 189
+ + F R AG+ GA H+ + ++ S+PG+++ P + + RG
Sbjct: 415 ------LNVTFCIDR------AGIVGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRG 462
Query: 190 LLKAAIRDPDPVVFLENELLY--GESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFS 247
+LK A P Y G + V A L G+ + + G DV I A
Sbjct: 463 MLKYAQTHDGPFAIR-----YPRGNTAQVPAGTWPD---LKWGEWERLKGGDDVVILAGG 514
Query: 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGA 307
K + +LKAAE L G V+N R ++PLD + + L+TVE+ G G
Sbjct: 515 KALDYALKAAEDLPGVG----VVNARFVKPLDEEMLREVGGRARALITVEDNTVVGGFGG 570
Query: 308 EI 309
+
Sbjct: 571 AV 572
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid,
transferase; HET: TDP; 2.40A {Escherichia coli}
Length = 621
Score = 85.6 bits (213), Expect = 1e-18
Identities = 60/247 (24%), Positives = 102/247 (41%), Gaps = 57/247 (23%)
Query: 83 PERVLDTPITE-------AGFTGIGVGAAYYGLKPVVE-FMTFNFSMQ-AIDHIINSAAK 133
P+R D I E AG A G KP+V + TF +Q A D +++ A
Sbjct: 360 PDRYFDVAIAEQHAVTFAAGL-------AIGGYKPIVAIYSTF---LQRAYDQVLHDVAI 409
Query: 134 SNYMSSGQISVPIVF---RGPNGAAAGV----GAQHSHCY-AAWYASVPGLKVLSPYSSE 185
+P++F R AG+ G H + ++ +P + +++P
Sbjct: 410 QK--------LPVLFAIDR------AGIVGADGQTHQGAFDLSYLRCIPEMVIMTPSDEN 455
Query: 186 DARGLLKAAIR-DPDPVVFLENELLY--GESFPVSAEVLDSSFCLPIGKAKIEREGKDVT 242
+ R +L + P Y G + V L+ LPIGK ++R G+ +
Sbjct: 456 ECRQMLYTGYHYNDGPSAVR-----YPRGNAVGVELTPLEK---LPIGKGIVKRRGEKLA 507
Query: 243 ITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQ 302
I F ++ + K AE ++A ++++R ++PLD + I LVTVEE
Sbjct: 508 ILNFGTLMPEAAKVAE-----SLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIM 562
Query: 303 HGVGAEI 309
G G+ +
Sbjct: 563 GGAGSGV 569
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis
sugar metaboli transferase; HET: TPP; 1.75A {Homo
sapiens} PDB: 3ooy_A*
Length = 616
Score = 72.2 bits (178), Expect = 3e-14
Identities = 40/149 (26%), Positives = 65/149 (43%), Gaps = 18/149 (12%)
Query: 172 SVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL----ENELLYGESFPVSAEVLDSSFCL 227
SVP V P ++ A EN ++Y +
Sbjct: 437 SVPTSTVFYPSDGVATEKAVELAANTKGICFIRTSRPENAIIYNNNED-----------F 485
Query: 228 PIGKAKIEREGK--DVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINA 285
+G+AK+ + K VT+ + +L AAE+L KE I+ V++ +I+PLDR I
Sbjct: 486 QVGQAKVVLKSKDDQVTVIGAGVTLHEALAAAELLKKEKINIRVLDPFTIKPLDRKLILD 545
Query: 286 SVRKT-NRLVTVEEGFPQHGVGAEIWCAF 313
S R T R++TVE+ + + G+G + A
Sbjct: 546 SARATKGRILTVEDHYYEGGIGEAVSSAV 574
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.1 bits (114), Expect = 2e-06
Identities = 63/363 (17%), Positives = 110/363 (30%), Gaps = 143/363 (39%)
Query: 27 LRNYSSAVKQMM--VREALNSALDEEMSADP-KVF-LMGEEVGEYQGA-----------Y 71
++NY +A + NSAL + ++ + G G QG Y
Sbjct: 123 IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG---G--QGNTDDYFEELRDLY 177
Query: 72 KISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHII--- 128
+ L+ I + L F+ Q ++ I+
Sbjct: 178 QTYHVLVGDL---------IKFSA-------ETLSELIRTTLDAEKVFT-QGLN-ILEWL 219
Query: 129 ---NSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSE 185
++ +Y+ S IS P++ GV Q +H Y K+L ++
Sbjct: 220 ENPSNTPDKDYLLSIPISCPLI---------GV-IQLAH-----YVVT--AKLLG-FTPG 261
Query: 186 DARGLLKAAIRDPDPVV-------------FLEN-----ELLY--G----ESFPVSAEVL 221
+ R LK A +V F + +L+ G E++P ++
Sbjct: 262 ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTS--- 318
Query: 222 DSSFCLPIGKAKIEREGKDVTITA----FSKIVGLSLKAAE-ILAK--------EGISAE 268
LP I + + S I L+ + + + K + +
Sbjct: 319 -----LP---PSILEDSLENNEGVPSPMLS-ISNLTQEQVQDYVNKTNSHLPAGKQVEIS 369
Query: 269 VIN--------------------LRSIRP---LDRSTINASVRK---TNR-L-VTVEEGF 300
++N LR + LD+S I S RK +NR L V
Sbjct: 370 LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVAS---- 425
Query: 301 PQH 303
P H
Sbjct: 426 PFH 428
Score = 31.6 bits (71), Expect = 0.47
Identities = 34/206 (16%), Positives = 57/206 (27%), Gaps = 102/206 (49%)
Query: 13 GGSPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYK 72
GG RIR NYS+ M+ E + +D ++ + K+F +E+ E
Sbjct: 1677 GGEKGKRIR------ENYSA-----MIFE---TIVDGKLKTE-KIF---KEINE-----H 1713
Query: 73 ISKGLLEKYGPERVLD-TPITE-AGFTGIGVGAAYY------GLKPVV---------EF- 114
+ + +L T T+ A + A + GL P E+
Sbjct: 1714 STSYTFR--SEKGLLSATQFTQPALTL---MEKAAFEDLKSKGLIPADATFAGHSLGEYA 1768
Query: 115 --------MTF--------------------------NFSMQAID--------------H 126
M+ N+ M AI+ +
Sbjct: 1769 ALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQY 1828
Query: 127 IINSAAKS--------NYMSSGQISV 144
++ K NY Q V
Sbjct: 1829 VVERVGKRTGWLVEIVNYNVENQQYV 1854
Score = 30.0 bits (67), Expect = 1.3
Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 17/89 (19%)
Query: 22 PVV-----SNLRNYSSAVKQMMVREALNSALDEEMSADPK---VFLMGEEVGEYQGAYKI 73
PV S+LR S ++ + +V + + E + K + G G G +
Sbjct: 458 PVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGP--GGASGLGVL 515
Query: 74 SKGLLEKYGPERV-----LDT-PITEAGF 96
+ + G RV LD P + GF
Sbjct: 516 THRNKDGTG-VRVIVAGTLDINPDDDYGF 543
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.6 bits (94), Expect = 5e-04
Identities = 56/327 (17%), Positives = 92/327 (28%), Gaps = 99/327 (30%)
Query: 14 GSPVARIRPVVSNLRNYSSAVKQMMVREALN-------SALDEE---------------- 50
V+ + L + + Q V E L S + E
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 51 -MSADPKVFLMGEEVGEYQGAYKISKGLLE-KYGPERVLDTPITEAGFTGIG----VGAA 104
+ D +VF V Q K+ + LLE + ++D G G G
Sbjct: 118 RLYNDNQVFAKY-NVSRLQPYLKLRQALLELRPAKNVLID------GVLGSGKTWVALDV 170
Query: 105 Y--YGLKPVVEFMTF--NFS-----------MQAIDHIINSAAKSNYMSSGQISVPIVFR 149
Y ++ ++F F N +Q + + I+ N+ S S I R
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID----PNWTSRSDHSSNIKLR 226
Query: 150 GPNGAAAGV-----GAQHSHCYA----AWYASV-----PGLKVL--SPYSS-EDARGLLK 192
+ A + + +C A K+L + + D L
Sbjct: 227 -IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF---LS 282
Query: 193 AAIRDPDPVVFLENELLYGESFPVSAEVLD-SSFCLP-------------IGKAKIEREG 238
AA + L E + + LD LP I ++ R+G
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI--RDG 340
Query: 239 -------KDVTITAFSKIVGLSLKAAE 258
K V + I+ SL E
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLE 367
Score = 34.4 bits (78), Expect = 0.050
Identities = 30/163 (18%), Positives = 49/163 (30%), Gaps = 37/163 (22%)
Query: 60 MGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNF 119
M E GE+Q YK +L + V + + K V +
Sbjct: 7 MDFETGEHQYQYK---DILSVFEDAFVDN-----------------FDCKDVQDMPKSIL 46
Query: 120 SMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASV------ 173
S + IDHII S K + ++ ++ + V Y + S
Sbjct: 47 SKEEIDHIIMS--KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY-KFLMSPIKTEQR 103
Query: 174 -PGLKVLSPYSSE------DARGLLKAAIRDPDPVVFLENELL 209
P + Y + D + K + P + L LL
Sbjct: 104 QPSMMTRM-YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145
Score = 32.5 bits (73), Expect = 0.19
Identities = 18/110 (16%), Positives = 39/110 (35%), Gaps = 24/110 (21%)
Query: 36 QMMVREALNSALDEEMSADPKVFLMG---EEVGEYQGAYKISKGLLEKYGPERVLD---- 88
++V + +L E+ + + + E + + Y + + +++ Y + D
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL 464
Query: 89 TPITEAG--FTGIGVGAAYYGLKPVVE----------FMTFNFSMQAIDH 126
P ++ IG + LK + F+ F F Q I H
Sbjct: 465 IPPYLDQYFYSHIG-----HHLKNIEHPERMTLFRMVFLDFRFLEQKIRH 509
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural
genomics, PSI-2, protein structu initiative; 1.90A
{Thermoplasma acidophilum}
Length = 118
Score = 34.3 bits (79), Expect = 0.014
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTV 296
+ D+T + G L E L +EGISA ++ L+ P + + N ++ V
Sbjct: 12 KEADITFVTWGSQKGPILDVIEDLKEEGISANLLYLKMFSPFPTEFVKNVLSSANLVIDV 71
Query: 297 E 297
E
Sbjct: 72 E 72
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural
genomics, southeast collaboratory for structural
genomics, secsg; 2.30A {Pyrococcus furiosus}
Length = 395
Score = 34.4 bits (80), Expect = 0.044
Identities = 15/61 (24%), Positives = 31/61 (50%)
Query: 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTV 296
E ++ + A + +L+A ++L +EGI A ++ + +I P D I + ++L
Sbjct: 290 EDAEIGVVATGIVARSALRAVKMLREEGIKAGLLKIETIWPFDFELIERIAERVDKLYVP 349
Query: 297 E 297
E
Sbjct: 350 E 350
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural
genomics, center for structural genomics of infectious
DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Length = 663
Score = 31.7 bits (73), Expect = 0.35
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 235 EREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVI 270
+ +TI A V L++K A K+GI V
Sbjct: 546 DNPDAKLTIVATGSEVELAVKVANEFEKKGIKLNVA 581
>3l84_A Transketolase; TKT, structural genomics, center for structur
genomics of infectious diseases, csgid, transferase;
HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A*
3m34_A* 3m7i_A*
Length = 632
Score = 31.3 bits (72), Expect = 0.43
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 235 EREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVI 270
E + T+ A V L L++A L K+G + V+
Sbjct: 522 ESKEAKFTLLASGSEVWLCLESANELEKQGFACNVV 557
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur,
iron-sulfur cluster, pyruvate catabolism, TPP-dependent
enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP:
c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB:
1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A*
2pda_A* 2uza_A*
Length = 1231
Score = 31.4 bits (71), Expect = 0.46
Identities = 11/57 (19%), Positives = 23/57 (40%)
Query: 240 DVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTV 296
+ I + + LA +G +I +R RP A++ + +++TV
Sbjct: 269 ERVIVSMGSSCETIEEVINHLAAKGEKIGLIKVRLYRPFVSEAFFAALPASAKVITV 325
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic
nucleotide-binding domain, structural genomics, joint
for structural genomics; 2.55A {Eubacterium rectale atcc
33656}
Length = 220
Score = 30.3 bits (69), Expect = 0.60
Identities = 8/54 (14%), Positives = 19/54 (35%)
Query: 183 SSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIER 236
S++ R + + D D + + ++ F V+ E + I +
Sbjct: 60 LSDEGREITLYRLFDMDMCLLSASCIMRSIQFEVTIEAEKDTDLWIIPAEIYKG 113
>2bpa_1 Protein (subunit of bacteriophage PHIX174); protein-DNA complex,
single strand, icosahedral virus, virus/DNA complex;
HET: DNA; 3.00A {Enterobacteria phage PHIX174} SCOP:
b.121.5.1 PDB: 1al0_F* 1cd3_F 1m06_F* 1m0f_F 1rb8_F*
Length = 426
Score = 30.2 bits (67), Expect = 0.97
Identities = 23/109 (21%), Positives = 34/109 (31%), Gaps = 3/109 (2%)
Query: 79 EKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMS 138
K+ + V TP+ TG AA+ G Q +I N+ K+ +M
Sbjct: 82 IKFMKDGVNATPLPTVNTTGYIDHAAFLGTINPDTNKIPKHLFQGYLNIYNNYFKAPWM- 140
Query: 139 SGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDA 187
N A G + H W A +P LS +
Sbjct: 141 --PDRTEANPNELNQDDARYGFRCCHLKNIWTAPLPPETELSRQMTTST 187
>3uk1_A Transketolase; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, thiamine
pyrophosphate; 2.15A {Burkholderia thailandensis} PDB:
3upt_A*
Length = 711
Score = 30.2 bits (69), Expect = 1.00
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 250 VGLSLKAAEILAKEGISAEVI 270
V L++KA E LA++GI+A V+
Sbjct: 609 VELAMKAVEPLAQQGIAARVV 629
>2e6k_A Transketolase; structural genomics, NPPSFA, national project
protein structural and functional analyses; 2.09A
{Thermus thermophilus}
Length = 651
Score = 30.1 bits (69), Expect = 1.0
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 235 EREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVI 270
+ E + A V L+L+A +L ++G+ V+
Sbjct: 538 DVEEPQGVLVATGSEVHLALRAQALLREKGVRVRVV 573
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 30.2 bits (68), Expect = 1.1
Identities = 16/93 (17%), Positives = 27/93 (29%), Gaps = 31/93 (33%)
Query: 77 LLEKYGPERVLDTPITEAGFTGIGVG---------AAYYGLKPVVEFMTFNFSMQAIDHI 127
+ + V +G G+G + +PV + +
Sbjct: 1035 MYKYVHVSEV-------GNCSGSGMGGVSALRGMFKDRFKDEPV-------QNDILQESF 1080
Query: 128 INSAAKSNYMSSGQISVPIVFRGPNGAAAGVGA 160
IN+ MS+ + I GP VGA
Sbjct: 1081 INT------MSAWVNMLLISSSGPIKTP--VGA 1105
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate,
plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP:
c.36.1.6 c.36.1.10 c.48.1.1
Length = 675
Score = 30.1 bits (69), Expect = 1.2
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 250 VGLSLKAAEILAKEGISAEVI 270
+ ++ KAA+ L KEG + V+
Sbjct: 574 LEIAAKAADELRKEGKTVRVV 594
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium
tuberculosis}
Length = 700
Score = 29.8 bits (68), Expect = 1.2
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 250 VGLSLKAAEILAKEGISAEVI 270
V L++ A +LA I A V+
Sbjct: 596 VQLAVAAQTLLADNDILARVV 616
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A
{Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10
c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A*
1tkc_A*
Length = 680
Score = 29.8 bits (68), Expect = 1.3
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 250 VGLSLKAAEILAKEGISAEVI 270
V LS++AA+ LA + I A V+
Sbjct: 566 VSLSVEAAKTLAAKNIKARVV 586
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium,
metal-binding, thiamine pyrophosphate, transferase; HET:
T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6
c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Length = 669
Score = 29.8 bits (68), Expect = 1.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 250 VGLSLKAAEILAKEGISAEVI 270
V L++ A E L EG+ A V+
Sbjct: 561 VELAVAAYEKLTAEGVKARVV 581
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase,
structural genomics, center for structural genomics of
infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A
{Bacillus anthracis} PDB: 3hyl_A*
Length = 690
Score = 29.8 bits (68), Expect = 1.4
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 250 VGLSLKAAEILAKEGISAEVI 270
V L+++A + LA +G+ A V+
Sbjct: 588 VSLAVEAQKALAVDGVDASVV 608
>1m3y_A The major capsid protein of PBCV-1, VP54; major capsit protein
VP54, jelly RO glycoprotein, viral protein; HET: NDG MAN
NAG; 2.00A {Paramecium bursaria chlorella virus 1} SCOP:
b.121.2.3 b.121.2.3 PDB: 1j5q_A* 3kk5_A 1m4x_A
Length = 413
Score = 28.7 bits (62), Expect = 3.0
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 118 NFSMQAIDHIINSAAKSNYMSSGQIS 143
NF++++I IN + S QIS
Sbjct: 12 NFAIESIQQTINGSVGFGNKVSTQIS 37
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 3.1
Identities = 6/18 (33%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
Query: 179 LSPYSSEDARGL-LKAAI 195
L Y+ + A L +KA +
Sbjct: 29 LKLYADDSAPALAIKATM 46
>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure
initiativ midwest center for structural genomics,
rossmann fold; 1.10A {Methanosarcina mazei}
Length = 103
Score = 26.2 bits (58), Expect = 6.5
Identities = 7/42 (16%), Positives = 17/42 (40%)
Query: 255 KAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTV 296
K ++L G+ + + + + + VR+ N V+
Sbjct: 37 KTKKLLTDLGVDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSF 78
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho;
thiamine diphosphate-dependent enzyme, alpha-beta fold;
HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A*
3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Length = 845
Score = 27.4 bits (60), Expect = 8.0
Identities = 14/85 (16%), Positives = 32/85 (37%), Gaps = 6/85 (7%)
Query: 237 EGKDVTITAFSKIVGL-SLKAAEILAKEGISAEVINLRSIRPLDRSTIN---ASVRKTNR 292
+ V + + + + A++ L K GI +V+N+ + L N + +
Sbjct: 658 DEVQVVLASAGDVPTQELMAASDALNKMGIKFKVVNVVDLLKLQSRENNDEALTDEEFTE 717
Query: 293 LVTVEEG--FPQHGVGAEIWCAFFP 315
L T ++ F H ++ +
Sbjct: 718 LFTADKPVLFAYHSYAQDVRGLIYD 742
>2ix4_A 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ketoacyl-(acyl
carrier protein) synthase, lipid metabol condensing
enzyme; 1.95A {Arabidopsis thaliana} SCOP: c.95.1.1
c.95.1.1 PDB: 1w0i_A
Length = 431
Score = 27.2 bits (61), Expect = 8.8
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 7/30 (23%)
Query: 127 IINSAAKSNYMSSGQISVPIVFRGPNGAAA 156
++N M+SG +S+ F+GPN AA
Sbjct: 154 LVN-------MASGHVSMKYGFQGPNHAAV 176
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate,
glycolysis, MAG metal-binding, oxidoreductase, thiamine
pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP:
c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A*
2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Length = 886
Score = 27.5 bits (61), Expect = 8.8
Identities = 10/22 (45%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 249 IVGLSLKAAEILAKE-GISAEV 269
I+ +AAEILAK+ G+ ++V
Sbjct: 734 ILRHVREAAEILAKDYGVGSDV 755
>3rao_A Putative luciferase-like monooxygenase; unknown, structural
genomics, PSI-biology, midwest center FO structural
genomics, MCSG, enzyme; 2.30A {Bacillus cereus}
Length = 371
Score = 27.0 bits (60), Expect = 9.7
Identities = 10/58 (17%), Positives = 17/58 (29%), Gaps = 4/58 (6%)
Query: 145 PIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVV 202
+ G + V H+ Y +V + V ED + K +P
Sbjct: 201 KLYAGGESKRGKEVIVNHADAYVMHGGTVEEVSVK----IEDMKNRRKKVTEEPLQSF 254
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.390
Gapped
Lambda K H
0.267 0.0839 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,121,286
Number of extensions: 325564
Number of successful extensions: 866
Number of sequences better than 10.0: 1
Number of HSP's gapped: 847
Number of HSP's successfully gapped: 58
Length of query: 325
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 231
Effective length of database: 4,077,219
Effective search space: 941837589
Effective search space used: 941837589
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.5 bits)