BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020511
(325 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 241 bits (616), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 130/302 (43%), Positives = 176/302 (58%), Gaps = 18/302 (5%)
Query: 29 FYSRSCPRAESIVKSTVQAHFRSDPTVAPGLLRMHFHDCFVHGCDASILINGPNT---EK 85
FY+ CP A S +KS V + + + LLR+HFHDCFV GCDAS+L++ + EK
Sbjct: 6 FYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSNFTGEK 65
Query: 86 TAPPN-RLLRGYDVIDDAKSQIEAACPGIVSCADILALAARDSVVVTRGISWQVPTGRRD 144
TA PN +RG++VID KSQ+E+ CPG+VSCADILA+AARDSVV G SW V GRRD
Sbjct: 66 TAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGGASWNVLLGRRD 125
Query: 145 GRI-SLASDTANLPGFTESVEAQKQKFLDKGLNTQDLVTLVGAHTIGTTACQIFKYRLYN 203
SL+S ++LP ++ F +KG T++LVTL GAHTIG C F+ R+YN
Sbjct: 126 STTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIGQAQCTAFRTRIYN 185
Query: 204 FXXXXXXXXXXXXXXXFIPQLRALCPENGDGARRVALDTGSPNRFDTSFFSNLRNGRGVL 263
+ L+A CP G D +PN+FD +++ NLRN +G+L
Sbjct: 186 ---------ESNIDPTYAKSLQANCPSVGGDTNLSPFDVTTPNKFDNAYYINLRNKKGLL 236
Query: 264 ESDQKLWSDASTKAVVQRFLGVRGLLGLTFNVEFGRSMVKMSNIGVKTGTDGEIRKICSA 323
SDQ+L++ ST + V + TFN +FG +M+KM N+ TGT G+IR C
Sbjct: 237 HSDQQLFNGVSTDSQVTAYSNNAA----TFNTDFGNAMIKMGNLSPLTGTSGQIRTNCRK 292
Query: 324 IN 325
N
Sbjct: 293 TN 294
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 239 bits (610), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 130/304 (42%), Positives = 183/304 (60%), Gaps = 13/304 (4%)
Query: 29 FYSRSCPRAESIVKSTVQAHFRSDPTVAPGLLRMHFHDCFVHGCDASILINGP---NTEK 85
FYS +CP A +IV+ST+Q +SD + L+R+HFHDCFV+GCDASIL++ +EK
Sbjct: 7 FYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTGSIQSEK 66
Query: 86 TAPPN-RLLRGYDVIDDAKSQIEAACPGIVSCADILALAARDSVVVTRGISWQVPTGRRD 144
A PN RG++V+D+ K+ +E ACPG+VSC+D+LALA+ SV + G SW V GRRD
Sbjct: 67 NAGPNVNSARGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGPSWTVLLGRRD 126
Query: 145 GRIS-LASDTANLPGFTESVEAQKQKFLDKGLNTQDLVTLVGAHTIGTTACQIFKYRLYN 203
+ LA +++P ES+ KF GLNT DLV L GAHT G C +F RL+N
Sbjct: 127 SLTANLAGANSSIPSPIESLSNITFKFSAVGLNTNDLVALSGAHTFGRARCGVFNNRLFN 186
Query: 204 FXXXXXXXXXXXXXXXFIPQLRALCPENGDGARRVALDTGSPNRFDTSFFSNLRNGRGVL 263
F + L+ LCP+NG + LD +P+ FD ++F+NL++ G+L
Sbjct: 187 F--SGTGNPDPTLNSTLLSTLQQLCPQNGSASTITNLDLSTPDAFDNNYFANLQSNDGLL 244
Query: 264 ESDQKLWSD--ASTKAVVQRFLGVRGLLGLTFNVEFGRSMVKMSNIGVKTGTDGEIRKIC 321
+SDQ+L+S +ST A+V F + L F F +SM+ M NI TG++GEIR C
Sbjct: 245 QSDQELFSTTGSSTIAIVTSFASNQTL----FFQAFAQSMINMGNISPLTGSNGEIRLDC 300
Query: 322 SAIN 325
+N
Sbjct: 301 KKVN 304
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 227 bits (578), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 125/304 (41%), Positives = 178/304 (58%), Gaps = 13/304 (4%)
Query: 29 FYSRSCPRAESIVKSTVQAHFRSDPTVAPGLLRMHFHDCFVHGCDASILINGPN---TEK 85
FY+ +CP A ++V++ VQ F+SD + L+R+HFHDCFV GCDASIL++ +EK
Sbjct: 8 FYAGTCPNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLGCDASILLDNSGSIISEK 67
Query: 86 TAPPN-RLLRGYDVIDDAKSQIEAACPGIVSCADILALAARDSVVVTRGISWQVPTGRRD 144
A PN RG++V+D+ K+ +E ACPG+VSC D+LALA++ SV ++ G SW V GRRD
Sbjct: 68 NAGPNANSARGFNVVDNIKTALENACPGVVSCTDVLALASQASVSLSGGPSWTVDLGRRD 127
Query: 145 G-RISLASDTANLPGFTESVEAQKQKFLDKGLNTQDLVTLVGAHTIGTTACQIFKYRLYN 203
+ A +++P T+ + KF GLNT DLV L GAHT G C +F RL+N
Sbjct: 128 TLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTNDLVALSGAHTFGRATCGVFSNRLFN 187
Query: 204 FXXXXXXXXXXXXXXXFIPQLRALCPENGDGARRVALDTGSPNRFDTSFFSNLRNGRGVL 263
F Q LCP+ G G+ LD +P+ FD ++F+NL++ G+L
Sbjct: 188 FSGKGNPDPTLNTTLLSTLQ--ELCPQKGRGSGSTNLDLSTPDAFDNNYFTNLQSNNGLL 245
Query: 264 ESDQKLWSD--ASTKAVVQRFLGVRGLLGLTFNVEFGRSMVKMSNIGVKTGTDGEIRKIC 321
+SDQ+L+S ++T A+V F + L F F +SM+ M NI TG+ GEIR C
Sbjct: 246 QSDQELFSTTGSATIAIVTSFASNQTL----FFQAFAQSMINMGNISPLTGSSGEIRLDC 301
Query: 322 SAIN 325
N
Sbjct: 302 KKTN 305
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 224 bits (572), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 136/308 (44%), Positives = 183/308 (59%), Gaps = 15/308 (4%)
Query: 26 RVGFYSRSCPRAESIVKSTVQAHFRSDPTVAPGLLRMHFHDCFVHGCDASILINGP--NT 83
++GFY+ SCP AES+V+ V A F ++ +APGL+RMHFHDCFV GCDAS+L++ NT
Sbjct: 3 QIGFYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANNT 62
Query: 84 -EKTAPPNR-LLRGYDVIDDAKSQIEAACPGIVSCADILALAARDSVVVTRGISWQVPTG 141
EK A PN LRG++VI AKS +EAACP VSCADILA AARDS + I++QVP+G
Sbjct: 63 AEKDAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQVPSG 122
Query: 142 RRDGRISLASD-TANLPGFTESVEAQKQKFLDKGLNTQDLVTLVGAHTIGTTACQIFKYR 200
RRDG +SLAS+ A +P + F +K L ++VTL GAH+IG C F R
Sbjct: 123 RRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSGAHSIGVAHCSSFTNR 182
Query: 201 LYNFXXXXXXXXXXXXXXXFIPQLRALCPENGD--GARRVALDTGSPNRFDTSFFSNLRN 258
LYNF + LR CP N V+LD +P+ D +++ ++
Sbjct: 183 LYNF--NSGSGIDPTLSPSYAALLRNTCPANSTRFTPITVSLDIITPSVLDNMYYTGVQL 240
Query: 259 GRGVLESDQKLWSDASTKAVVQRFLGVRGLLGLT-FNVEFGRSMVKMSNIGVKTGTDGEI 317
G+L SDQ L ++A+ A V+ + LT + +F ++MVKM I V TGT GEI
Sbjct: 241 TLGLLTSDQALVTEANLSAAVK-----ANAMNLTAWASKFAQAMVKMGQIEVLTGTQGEI 295
Query: 318 RKICSAIN 325
R CS +N
Sbjct: 296 RTNCSVVN 303
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 224 bits (571), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 121/302 (40%), Positives = 175/302 (57%), Gaps = 13/302 (4%)
Query: 29 FYSRSCPRAESIVKSTVQAHFRSDPTVAPGLLRMHFHDCFVHGCDASILINGPNTEKTAP 88
Y++SCP IV+ V +++ +A L+R+HFHDCFV+GCDAS+L++G ++EK A
Sbjct: 6 IYAKSCPNLVQIVRKQVAIALKAEIRMAASLIRLHFHDCFVNGCDASLLLDGADSEKLAI 65
Query: 89 PN-RLLRGYDVIDDAKSQIEAACPGIVSCADILALAARDSVVVTRGISWQVPTGRRDGRI 147
PN RG++VID K+ +E ACPG+VSCADIL LAARDSVV++ G W+V GR+DG +
Sbjct: 66 PNINSARGFEVIDTIKAAVENACPGVVSCADILTLAARDSVVLSGGPGWRVALGRKDGLV 125
Query: 148 SLASDTANLPGFTESVEAQKQKFLDKGLNTQDLVTLVGAHTIGTTACQIFKYRLYNFXXX 207
+ + NLP E ++A KF+ LN D+V L GAHT G C +F RL+NF
Sbjct: 126 ANQNSANNLPSPFEPLDAIIAKFVAVNLNITDVVALSGAHTFGQAKCAVFSNRLFNF--T 183
Query: 208 XXXXXXXXXXXXFIPQLRALCPENGDGARRVALDTGSPNRFDTSFFSNLRNGRGVLESDQ 267
+ L+ +CP G+ LD + + FD ++F NL G+G+L SDQ
Sbjct: 184 GAGNPDATLETSLLSNLQTVCPLGGNSNITAPLDRSTTDTFDNNYFKNLLEGKGLLSSDQ 243
Query: 268 KLWSD----ASTKAVVQRFLGVRGLLGLTFNVEFGRSMVKMSNIGVKTGTDGEIRKICSA 323
L+S +TK +V+ + + L F +F +M++M NI G GE+R C
Sbjct: 244 ILFSSDLAVNTTKKLVEAYSRSQSL----FFRDFTCAMIRMGNI--SNGASGEVRTNCRV 297
Query: 324 IN 325
IN
Sbjct: 298 IN 299
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 218 bits (554), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 131/311 (42%), Positives = 182/311 (58%), Gaps = 22/311 (7%)
Query: 24 GTRVGFYSRSCPRAESIVKSTVQAHFRSDPTVAPGLLRMHFHDCFVHGCDASILINGPNT 83
G FY ++CPRAESIV+ VQ R D +A GLLR+HFHDCFV GCDAS+L++G T
Sbjct: 8 GLSFDFYWQTCPRAESIVREFVQEAVRKDIGLAAGLLRLHFHDCFVQGCDASVLLDGSAT 67
Query: 84 ---EKTAPPNRLLR--GYDVIDDAKSQIEAACPG-IVSCADILALAARDSVVVTRGISWQ 137
E+ APPN LR + ++D + ++E C G +VSC+DILALAARDSVVV+ G ++
Sbjct: 68 GPGEQQAPPNLTLRPSAFKAVNDIRDRLERECRGAVVSCSDILALAARDSVVVSGGPDYR 127
Query: 138 VPTGRRDGRISLASDT---ANLPGFTESVEAQKQKFLDKGLNTQDLVTLVGAHTIGTTAC 194
VP GRRD R S AS ++LPG + +V++ GL+ DLVT+ G HTIG C
Sbjct: 128 VPLGRRDSR-SFASTQDVLSDLPGPSSNVQSLLALLGRLGLDATDLVTISGGHTIGLAHC 186
Query: 195 QIFKYRLYNFXXXXXXXXXXXXXXXFIPQLRALCPENGDGARRVALDTGSPNRFDTSFFS 254
F+ RL+ F+ +L+ CP G RR LD +PN FD ++
Sbjct: 187 SSFEDRLF-------PRPDPTISPTFLSRLKRTCPAKGTD-RRTVLDVRTPNVFDNKYYI 238
Query: 255 NLRNGRGVLESDQKLWSDASTKAVVQRFLGVRGLLGLTFNVEFGRSMVKMSNIGVKTGTD 314
+L N G+ SDQ L+++A T+ +V+RF + F +FG S+ KM + V+T
Sbjct: 239 DLVNREGLFVSDQDLFTNAITRPIVERFAQSQQ----DFFEQFGVSIGKMGQMRVRTSDQ 294
Query: 315 GEIRKICSAIN 325
GE+R+ CS N
Sbjct: 295 GEVRRNCSVRN 305
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 212 bits (540), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 126/306 (41%), Positives = 170/306 (55%), Gaps = 15/306 (4%)
Query: 29 FYSRSCPRAESIVKSTVQAHFRSDPTVAPGLLRMHFHDCFVHGCDASILINGPN---TEK 85
FY SCP +IV+ T+ RSDP +A +LR+HFHDCFV+GCDASIL++ TEK
Sbjct: 7 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEK 66
Query: 86 TAPPN-RLLRGYDVIDDAKSQIEAACPGIVSCADILALAARDSVVVTRGISWQVPTGRRD 144
A N RG+ VID K+ +E+ACP VSCAD+L +AA+ SV + G SW+VP GRRD
Sbjct: 67 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRD 126
Query: 145 G-RISLASDTANLPGFTESVEAQKQKFLDKGLN-TQDLVTLVGAHTIGTTACQIFKYRLY 202
+ L ANLPG ++ K F + GLN + DLV L G HT G C+ RLY
Sbjct: 127 SLQAFLDLANANLPGPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLY 186
Query: 203 NFXXXXXXXXXXXXXXXFIPQLRALCPENGDGARRVALDTGSPNRFDTSFFSNLRNGRGV 262
NF ++ LR LCP NG+ + V D +P FD ++ NL +G+
Sbjct: 187 NF--SNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGL 244
Query: 263 LESDQKLWSDAS---TKAVVQRFLGVRGLLGLTFNVEFGRSMVKMSNIGVKTGTDGEIRK 319
++SDQ+L+S + T +V+ F TF F +M +M NI TGT G+IR
Sbjct: 245 IQSDQELFSSPNATDTIPLVRSFANSTQ----TFFNAFVEAMDRMGNITPLTGTQGQIRL 300
Query: 320 ICSAIN 325
C +N
Sbjct: 301 NCRVVN 306
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 211 bits (537), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 125/306 (40%), Positives = 170/306 (55%), Gaps = 15/306 (4%)
Query: 29 FYSRSCPRAESIVKSTVQAHFRSDPTVAPGLLRMHFHDCFVHGCDASILINGPN---TEK 85
FY SCP +IV+ T+ RSDP +A +LR+HFHDCFV+GCDASIL++ TEK
Sbjct: 7 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEK 66
Query: 86 TAPPN-RLLRGYDVIDDAKSQIEAACPGIVSCADILALAARDSVVVTRGISWQVPTGRRD 144
A N RG+ VID K+ +E+ACP VSCAD+L +AA+ SV + G SW+VP GRRD
Sbjct: 67 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRD 126
Query: 145 G-RISLASDTANLPGFTESVEAQKQKFLDKGLN-TQDLVTLVGAHTIGTTACQIFKYRLY 202
+ L ANLP ++ K F + GLN + DLV L G HT G C+ RLY
Sbjct: 127 SLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLY 186
Query: 203 NFXXXXXXXXXXXXXXXFIPQLRALCPENGDGARRVALDTGSPNRFDTSFFSNLRNGRGV 262
NF ++ LR LCP NG+ + V +D +P FD ++ NL +G+
Sbjct: 187 NF--SNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDMDLRTPTIFDNKYYVNLEEQKGL 244
Query: 263 LESDQKLWSDAS---TKAVVQRFLGVRGLLGLTFNVEFGRSMVKMSNIGVKTGTDGEIRK 319
++SDQ+L+S + T +V+ F TF F +M +M NI TGT G+IR
Sbjct: 245 IQSDQELFSSPNATDTIPLVRSFANSTQ----TFFNAFVEAMDRMGNITPLTGTQGQIRL 300
Query: 320 ICSAIN 325
C +N
Sbjct: 301 NCRVVN 306
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 211 bits (536), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 125/306 (40%), Positives = 169/306 (55%), Gaps = 15/306 (4%)
Query: 29 FYSRSCPRAESIVKSTVQAHFRSDPTVAPGLLRMHFHDCFVHGCDASILINGPN---TEK 85
FY SCP +IV+ T+ RSDP +A +LR+HFHDCFV+GCDASIL++ TEK
Sbjct: 6 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEK 65
Query: 86 TAPPN-RLLRGYDVIDDAKSQIEAACPGIVSCADILALAARDSVVVTRGISWQVPTGRRD 144
A N RG+ VID K+ +E+ACP VSCAD+L +AA+ SV + G SW+VP GRRD
Sbjct: 66 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRD 125
Query: 145 G-RISLASDTANLPGFTESVEAQKQKFLDKGLN-TQDLVTLVGAHTIGTTACQIFKYRLY 202
+ L ANLP ++ K F + GLN + DLV L G HT G C+ RLY
Sbjct: 126 SLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALYGGHTFGKNQCRFIMDRLY 185
Query: 203 NFXXXXXXXXXXXXXXXFIPQLRALCPENGDGARRVALDTGSPNRFDTSFFSNLRNGRGV 262
NF ++ LR LCP NG+ + V D +P FD ++ NL +G+
Sbjct: 186 NF--SNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGL 243
Query: 263 LESDQKLWSDAS---TKAVVQRFLGVRGLLGLTFNVEFGRSMVKMSNIGVKTGTDGEIRK 319
++SDQ+L+S + T +V+ F TF F +M +M NI TGT G+IR
Sbjct: 244 IQSDQELFSSPNATDTIPLVRSFANSTQ----TFFNAFVEAMDRMGNITPLTGTQGQIRL 299
Query: 320 ICSAIN 325
C +N
Sbjct: 300 NCRVVN 305
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 211 bits (536), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 125/306 (40%), Positives = 169/306 (55%), Gaps = 15/306 (4%)
Query: 29 FYSRSCPRAESIVKSTVQAHFRSDPTVAPGLLRMHFHDCFVHGCDASILINGPN---TEK 85
FY SCP +IV+ T+ RSDP +A +LR+HFHDCFV+GCDASIL++ TEK
Sbjct: 6 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEK 65
Query: 86 TAPPN-RLLRGYDVIDDAKSQIEAACPGIVSCADILALAARDSVVVTRGISWQVPTGRRD 144
A N RG+ VID K+ +E+ACP VSCAD+L +AA+ SV + G SW+VP GRRD
Sbjct: 66 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRD 125
Query: 145 G-RISLASDTANLPGFTESVEAQKQKFLDKGLN-TQDLVTLVGAHTIGTTACQIFKYRLY 202
+ L ANLP ++ K F + GLN + DLV L G HT G C+ RLY
Sbjct: 126 SLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLY 185
Query: 203 NFXXXXXXXXXXXXXXXFIPQLRALCPENGDGARRVALDTGSPNRFDTSFFSNLRNGRGV 262
NF ++ LR LCP NG+ + V D +P FD ++ NL +G+
Sbjct: 186 NF--SNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGL 243
Query: 263 LESDQKLWSDAS---TKAVVQRFLGVRGLLGLTFNVEFGRSMVKMSNIGVKTGTDGEIRK 319
++SDQ+L+S + T +V+ F TF F +M +M NI TGT G+IR
Sbjct: 244 IQSDQELFSSPNATDTIPLVRSFANSTQ----TFFNAFVEAMDRMGNITPLTGTQGQIRL 299
Query: 320 ICSAIN 325
C +N
Sbjct: 300 NCRVVN 305
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 210 bits (535), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 125/306 (40%), Positives = 169/306 (55%), Gaps = 15/306 (4%)
Query: 29 FYSRSCPRAESIVKSTVQAHFRSDPTVAPGLLRMHFHDCFVHGCDASILINGPN---TEK 85
FY SCP +IV+ T+ RSDP +A +LR+HFHDCFV+GCDASIL++ TEK
Sbjct: 7 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEK 66
Query: 86 TAPPN-RLLRGYDVIDDAKSQIEAACPGIVSCADILALAARDSVVVTRGISWQVPTGRRD 144
A N RG+ VID K+ +E+ACP VSCAD+L +AA+ SV + G SW+VP GRRD
Sbjct: 67 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRD 126
Query: 145 G-RISLASDTANLPGFTESVEAQKQKFLDKGLN-TQDLVTLVGAHTIGTTACQIFKYRLY 202
+ L ANLP ++ K F + GLN + DLV L G HT G C+ RLY
Sbjct: 127 SLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLY 186
Query: 203 NFXXXXXXXXXXXXXXXFIPQLRALCPENGDGARRVALDTGSPNRFDTSFFSNLRNGRGV 262
NF ++ LR LCP NG+ + V D +P FD ++ NL +G+
Sbjct: 187 NF--SNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGL 244
Query: 263 LESDQKLWSDAS---TKAVVQRFLGVRGLLGLTFNVEFGRSMVKMSNIGVKTGTDGEIRK 319
++SDQ+L+S + T +V+ F TF F +M +M NI TGT G+IR
Sbjct: 245 IQSDQELFSSPNATDTIPLVRSFANSTQ----TFFNAFVEAMDRMGNITPLTGTQGQIRL 300
Query: 320 ICSAIN 325
C +N
Sbjct: 301 NCRVVN 306
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 210 bits (535), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 125/306 (40%), Positives = 169/306 (55%), Gaps = 15/306 (4%)
Query: 29 FYSRSCPRAESIVKSTVQAHFRSDPTVAPGLLRMHFHDCFVHGCDASILINGPN---TEK 85
FY SCP +IV+ T+ RSDP +A +LR+HFHDCFV+GCDASIL++ TEK
Sbjct: 6 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEK 65
Query: 86 TAPPN-RLLRGYDVIDDAKSQIEAACPGIVSCADILALAARDSVVVTRGISWQVPTGRRD 144
A N RG+ VID K+ +E+ACP VSCAD+L +AA+ SV + G SW+VP GRRD
Sbjct: 66 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRD 125
Query: 145 G-RISLASDTANLPGFTESVEAQKQKFLDKGLN-TQDLVTLVGAHTIGTTACQIFKYRLY 202
+ L ANLP ++ K F + GLN + DLV L G HT G C+ RLY
Sbjct: 126 SLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLY 185
Query: 203 NFXXXXXXXXXXXXXXXFIPQLRALCPENGDGARRVALDTGSPNRFDTSFFSNLRNGRGV 262
NF ++ LR LCP NG+ + V D +P FD ++ NL +G+
Sbjct: 186 NF--SNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGL 243
Query: 263 LESDQKLWSDAS---TKAVVQRFLGVRGLLGLTFNVEFGRSMVKMSNIGVKTGTDGEIRK 319
++SDQ+L+S + T +V+ F TF F +M +M NI TGT G+IR
Sbjct: 244 IQSDQELFSSPNATDTIPLVRSFANSTQ----TFFNAFVEAMDRMGNITPLTGTQGQIRL 299
Query: 320 ICSAIN 325
C +N
Sbjct: 300 NCRVVN 305
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 210 bits (535), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 125/306 (40%), Positives = 169/306 (55%), Gaps = 15/306 (4%)
Query: 29 FYSRSCPRAESIVKSTVQAHFRSDPTVAPGLLRMHFHDCFVHGCDASILINGPN---TEK 85
FY SCP +IV+ T+ RSDP +A +LR+HFHDCFV+GCDASIL++ TEK
Sbjct: 6 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEK 65
Query: 86 TAPPN-RLLRGYDVIDDAKSQIEAACPGIVSCADILALAARDSVVVTRGISWQVPTGRRD 144
A N RG+ VID K+ +E+ACP VSCAD+L +AA+ SV + G SW+VP GRRD
Sbjct: 66 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRD 125
Query: 145 G-RISLASDTANLPGFTESVEAQKQKFLDKGLN-TQDLVTLVGAHTIGTTACQIFKYRLY 202
+ L ANLP ++ K F + GLN + DLV L G HT G C+ RLY
Sbjct: 126 SLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLY 185
Query: 203 NFXXXXXXXXXXXXXXXFIPQLRALCPENGDGARRVALDTGSPNRFDTSFFSNLRNGRGV 262
NF ++ LR LCP NG+ + V D +P FD ++ NL +G+
Sbjct: 186 NF--SNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGL 243
Query: 263 LESDQKLWSDAS---TKAVVQRFLGVRGLLGLTFNVEFGRSMVKMSNIGVKTGTDGEIRK 319
++SDQ+L+S + T +V+ F TF F +M +M NI TGT G+IR
Sbjct: 244 IQSDQELFSSPNATDTIPLVRSFANSTQ----TFFNAFVEAMDRMGNITPLTGTQGQIRL 299
Query: 320 ICSAIN 325
C +N
Sbjct: 300 NCRVVN 305
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 210 bits (534), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 125/306 (40%), Positives = 169/306 (55%), Gaps = 15/306 (4%)
Query: 29 FYSRSCPRAESIVKSTVQAHFRSDPTVAPGLLRMHFHDCFVHGCDASILINGPN---TEK 85
FY SCP +IV+ T+ RSDP +A +LR+HFHDCFV+GCDASIL++ TEK
Sbjct: 7 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEK 66
Query: 86 TAPPN-RLLRGYDVIDDAKSQIEAACPGIVSCADILALAARDSVVVTRGISWQVPTGRRD 144
A N RG+ VID K+ +E+ACP VSCAD+L +AA+ SV + G SW+VP GRRD
Sbjct: 67 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRD 126
Query: 145 G-RISLASDTANLPGFTESVEAQKQKFLDKGLN-TQDLVTLVGAHTIGTTACQIFKYRLY 202
+ L ANLP ++ K F + GLN + DLV L G HT G C+ RLY
Sbjct: 127 SLQAFLDLANANLPQPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLY 186
Query: 203 NFXXXXXXXXXXXXXXXFIPQLRALCPENGDGARRVALDTGSPNRFDTSFFSNLRNGRGV 262
NF ++ LR LCP NG+ + V D +P FD ++ NL +G+
Sbjct: 187 NF--SNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGL 244
Query: 263 LESDQKLWSDAS---TKAVVQRFLGVRGLLGLTFNVEFGRSMVKMSNIGVKTGTDGEIRK 319
++SDQ+L+S + T +V+ F TF F +M +M NI TGT G+IR
Sbjct: 245 IQSDQELFSSPNATDTIPLVRSFANSTQ----TFFNAFVEAMDRMGNITPLTGTQGQIRL 300
Query: 320 ICSAIN 325
C +N
Sbjct: 301 NCRVVN 306
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 125/306 (40%), Positives = 169/306 (55%), Gaps = 15/306 (4%)
Query: 29 FYSRSCPRAESIVKSTVQAHFRSDPTVAPGLLRMHFHDCFVHGCDASILINGPN---TEK 85
FY SCP +IV+ T+ RSDP +A +LR+HFHDCFV+GCDASIL++ TEK
Sbjct: 7 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEK 66
Query: 86 TAPPN-RLLRGYDVIDDAKSQIEAACPGIVSCADILALAARDSVVVTRGISWQVPTGRRD 144
A N RG+ VID K+ +E+ACP VSCAD+L +AA+ SV + G SW+VP GRRD
Sbjct: 67 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRD 126
Query: 145 G-RISLASDTANLPGFTESVEAQKQKFLDKGLN-TQDLVTLVGAHTIGTTACQIFKYRLY 202
+ L ANLP ++ K F + GLN + DLV L G HT G C+ RLY
Sbjct: 127 SLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRSIMDRLY 186
Query: 203 NFXXXXXXXXXXXXXXXFIPQLRALCPENGDGARRVALDTGSPNRFDTSFFSNLRNGRGV 262
NF ++ LR LCP NG+ + V D +P FD ++ NL +G+
Sbjct: 187 NF--SNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGL 244
Query: 263 LESDQKLWSDAS---TKAVVQRFLGVRGLLGLTFNVEFGRSMVKMSNIGVKTGTDGEIRK 319
++SDQ+L+S + T +V+ F TF F +M +M NI TGT G+IR
Sbjct: 245 IQSDQELFSSPNATDTIPLVRSFANSTQ----TFFNAFVEAMDRMGNITPLTGTQGQIRL 300
Query: 320 ICSAIN 325
C +N
Sbjct: 301 NCRVVN 306
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 209 bits (531), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 124/306 (40%), Positives = 169/306 (55%), Gaps = 15/306 (4%)
Query: 29 FYSRSCPRAESIVKSTVQAHFRSDPTVAPGLLRMHFHDCFVHGCDASILINGPN---TEK 85
FY SCP +IV+ T+ RSDP +A +LR+HFHDCFV+GCDASIL++ TEK
Sbjct: 6 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEK 65
Query: 86 TAPPN-RLLRGYDVIDDAKSQIEAACPGIVSCADILALAARDSVVVTRGISWQVPTGRRD 144
A N RG+ VID K+ +E+ACP VSCAD+L +AA+ SV + G SW+VP GRRD
Sbjct: 66 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRD 125
Query: 145 G-RISLASDTANLPGFTESVEAQKQKFLDKGLN-TQDLVTLVGAHTIGTTACQIFKYRLY 202
+ L ANLP ++ K F + GLN + DLV L G H+ G C+ RLY
Sbjct: 126 SLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHSFGKNQCRFIMDRLY 185
Query: 203 NFXXXXXXXXXXXXXXXFIPQLRALCPENGDGARRVALDTGSPNRFDTSFFSNLRNGRGV 262
NF ++ LR LCP NG+ + V D +P FD ++ NL +G+
Sbjct: 186 NF--SNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGL 243
Query: 263 LESDQKLWSDAS---TKAVVQRFLGVRGLLGLTFNVEFGRSMVKMSNIGVKTGTDGEIRK 319
++SDQ+L+S + T +V+ F TF F +M +M NI TGT G+IR
Sbjct: 244 IQSDQELFSSPNATDTIPLVRSFANSTQ----TFFNAFVEAMDRMGNITPLTGTQGQIRL 299
Query: 320 ICSAIN 325
C +N
Sbjct: 300 NCRVVN 305
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 207 bits (527), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 124/306 (40%), Positives = 168/306 (54%), Gaps = 15/306 (4%)
Query: 29 FYSRSCPRAESIVKSTVQAHFRSDPTVAPGLLRMHFHDCFVHGCDASILINGPN---TEK 85
FY SCP +IV+ T+ RSDP +A +LR+HF DCFV+GCDASIL++ TEK
Sbjct: 7 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFEDCFVNGCDASILLDNTTSFRTEK 66
Query: 86 TAPPN-RLLRGYDVIDDAKSQIEAACPGIVSCADILALAARDSVVVTRGISWQVPTGRRD 144
A N RG+ VID K+ +E+ACP VSCAD+L +AA+ SV + G SW+VP GRRD
Sbjct: 67 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRD 126
Query: 145 G-RISLASDTANLPGFTESVEAQKQKFLDKGLN-TQDLVTLVGAHTIGTTACQIFKYRLY 202
+ L ANLP ++ K F + GLN + DLV L G HT G C+ RLY
Sbjct: 127 SLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLY 186
Query: 203 NFXXXXXXXXXXXXXXXFIPQLRALCPENGDGARRVALDTGSPNRFDTSFFSNLRNGRGV 262
NF ++ LR LCP NG+ + V D +P FD ++ NL +G+
Sbjct: 187 NF--SNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGL 244
Query: 263 LESDQKLWSDAS---TKAVVQRFLGVRGLLGLTFNVEFGRSMVKMSNIGVKTGTDGEIRK 319
++SDQ+L+S + T +V+ F TF F +M +M NI TGT G+IR
Sbjct: 245 IQSDQELFSSPNATDTIPLVRSFANSTQ----TFFNAFVEAMDRMGNITPLTGTQGQIRL 300
Query: 320 ICSAIN 325
C +N
Sbjct: 301 NCRVVN 306
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 204 bits (520), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 123/306 (40%), Positives = 167/306 (54%), Gaps = 15/306 (4%)
Query: 29 FYSRSCPRAESIVKSTVQAHFRSDPTVAPGLLRMHFHDCFVHGCDASILINGPN---TEK 85
FY SCP +IV+ T+ RSDP +A +L +HF DCFV+GCDASIL++ TEK
Sbjct: 6 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILSLHFEDCFVNGCDASILLDNTTSFRTEK 65
Query: 86 TAPPN-RLLRGYDVIDDAKSQIEAACPGIVSCADILALAARDSVVVTRGISWQVPTGRRD 144
A N RG+ VID K+ +E+ACP VSCAD+L +AA+ SV + G SW+VP GRRD
Sbjct: 66 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRD 125
Query: 145 G-RISLASDTANLPGFTESVEAQKQKFLDKGLN-TQDLVTLVGAHTIGTTACQIFKYRLY 202
+ L ANLP ++ K F + GLN + DLV L G HT G C+ RLY
Sbjct: 126 SLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLY 185
Query: 203 NFXXXXXXXXXXXXXXXFIPQLRALCPENGDGARRVALDTGSPNRFDTSFFSNLRNGRGV 262
NF ++ LR LCP NG+ + V D +P FD ++ NL +G+
Sbjct: 186 NF--SNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGL 243
Query: 263 LESDQKLWSDAS---TKAVVQRFLGVRGLLGLTFNVEFGRSMVKMSNIGVKTGTDGEIRK 319
++SDQ+L+S + T +V+ F TF F +M +M NI TGT G+IR
Sbjct: 244 IQSDQELFSSPNATDTIPLVRSFANSTQ----TFFNAFVEAMDRMGNITPLTGTQGQIRL 299
Query: 320 ICSAIN 325
C +N
Sbjct: 300 NCRVVN 305
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 202 bits (514), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 128/307 (41%), Positives = 170/307 (55%), Gaps = 19/307 (6%)
Query: 29 FYSRSCPRAESIVKSTVQAHFRSDPTVAPGLLRMHFHDCFVHGCDASILINGPNT---EK 85
FY +CP IV + +DP + L+R+HFHDCFV GCD S+L+N +T E+
Sbjct: 6 FYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDTIESEQ 65
Query: 86 TAPPN-RLLRGYDVIDDAKSQIEAACPGIVSCADILALAARDSVVVTRGISWQVPTGRRD 144
A PN +RG DV++D K+ +E +CP VSCADILA+AA + V+ G W VP GRRD
Sbjct: 66 DALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPVPLGRRD 125
Query: 145 GRISLASD----TANLPGFTESVEAQKQKFLDKGLNTQDLVTLVGAHTIGTTACQIFKYR 200
SL ++ NLP ++ K F +GLNT DLVTL G HT G C F R
Sbjct: 126 ---SLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLSGGHTFGRARCSTFINR 182
Query: 201 LYNFXXXXXXXXXXXXXXXFIPQLRALCPENGDGARRVALDTGSPNRFDTSFFSNLRNGR 260
LYNF ++ LRA CP+N G LD +P++FD ++SNL
Sbjct: 183 LYNF--SNTGNPDPTLNTTYLEVLRARCPQNATGDNLTNLDLSTPDQFDNRYYSNLLQLN 240
Query: 261 GVLESDQKLWSD--ASTKAVVQRFLGVRGLLGLTFNVEFGRSMVKMSNIGVKTGTDGEIR 318
G+L+SDQ+L+S A T +V F + TF F SM+KM NIGV TG +GEIR
Sbjct: 241 GLLQSDQELFSTPGADTIPIVNSFSSNQN----TFFSNFRVSMIKMGNIGVLTGDEGEIR 296
Query: 319 KICSAIN 325
C+ +N
Sbjct: 297 LQCNFVN 303
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 66/154 (42%), Gaps = 14/154 (9%)
Query: 55 VAPGLLRMHFHDCFVHGC---DASILINGPNTEKTAPPNRLL----RGYDVIDDAKSQIE 107
+ P L+R+ +H+ + C D S PN+ L +G D+ A ++
Sbjct: 26 LGPSLIRLAWHEAASYDCFKKDGS-----PNSASMRFKPECLYAGNKGLDIPRKALETLK 80
Query: 108 AACPGIVSCADILALAARDSVVVTRGISWQVPTGRRDGRI-SLASDTANLPGFTESVEAQ 166
P I S AD+ LAA ++ G + GR D + S+ LP +++
Sbjct: 81 KKYPQI-SYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKTQSHV 139
Query: 167 KQKFLDKGLNTQDLVTLVGAHTIGTTACQIFKYR 200
++ F G N Q+ V L+GAHT G T + Y
Sbjct: 140 REVFRRLGFNDQETVALIGAHTCGETHIEFSGYH 173
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 81/206 (39%), Gaps = 33/206 (16%)
Query: 114 VSCADILALAARDSVVVTRGISWQVPTGRRD-GRISLASDTANLPGFTESVEAQKQK--F 170
V+ AD+ LA+ ++ G + GR D + LP AQ + F
Sbjct: 87 VTYADLFQLASATAIEEAGGPKIPMKYGRVDVTEPEQCPEEGRLPDAGPPSPAQHLRDVF 146
Query: 171 LDKGLNTQDLVTLVGAHTIGTTACQIFKYRLYNFXXXXXXXXXXXXXXXFIPQLRALCPE 230
GLN +++V L GAHT+G + + P+ + +
Sbjct: 147 YRMGLNDKEIVALSGAHTLGRSRPDRSGWG--------------------KPETKYT--K 184
Query: 231 NGDGARRVALDTGSPNRFDTSFFSNLRNGRG----VLESDQKLWSDASTKAVVQRFLGVR 286
+G GA T +FD S+F +++ R VL +D L+ D S K +++
Sbjct: 185 DGPGAPGGQSWTAQWLKFDNSYFKDIKERRDEDLLVLPTDAALFEDPSFKVYAEKYAADP 244
Query: 287 GLLGLTFNVEFGRSMVKMSNIGVKTG 312
F ++ + K+SN+G K G
Sbjct: 245 ----EAFFKDYAEAHAKLSNLGAKFG 266
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 14/154 (9%)
Query: 55 VAPGLLRMHFHDCFVHGC---DASILINGPNTEKTAPPNRLL----RGYDVIDDAKSQIE 107
+ P L+R+ +H+ + C D S PN+ L +G D+ A ++
Sbjct: 25 LGPSLIRLAWHEAASYDCFKKDGS-----PNSASMRFKPECLYAGNKGLDIPRKALETLK 79
Query: 108 AACPGIVSCADILALAARDSVVVTRGISWQVPTGRRDGRI-SLASDTANLPGFTESVEAQ 166
P I S AD+ LAA ++ G + GR D + S+ LP +++
Sbjct: 80 KKYPQI-SYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKTQSHV 138
Query: 167 KQKFLDKGLNTQDLVTLVGAHTIGTTACQIFKYR 200
++ F G N Q+ V L+GAHT G + Y
Sbjct: 139 REVFRRLGFNDQETVALIGAHTCGECHIEFSGYH 172
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 14/154 (9%)
Query: 55 VAPGLLRMHFHDCFVHGC---DASILINGPNTEKTAPPNRLL----RGYDVIDDAKSQIE 107
+ P L+R+ +H+ + C D S PN+ L +G D+ A ++
Sbjct: 26 LGPSLIRLAWHEAASYDCFKKDGS-----PNSASMRFKPECLYAGNKGLDIPRKALETLK 80
Query: 108 AACPGIVSCADILALAARDSVVVTRGISWQVPTGRRDGRI-SLASDTANLPGFTESVEAQ 166
P I S AD+ LAA ++ G + GR D + S+ LP +++
Sbjct: 81 KKYPQI-SYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKTQSHV 139
Query: 167 KQKFLDKGLNTQDLVTLVGAHTIGTTACQIFKYR 200
++ F G N Q+ V L+GAHT G + Y
Sbjct: 140 REVFRRLGFNDQETVALIGAHTCGECHIEFSGYH 173
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 77/204 (37%), Gaps = 55/204 (26%)
Query: 113 IVSCADILALAARDSVVVTRGISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFLD 172
IVS AD LA +V +T G GR D LP T+ + + F
Sbjct: 89 IVSYADFYQLAGVVAVEITGGPEVPFHPGREDK--PEPPPEGRLPDATKGSDHLRDVFGK 146
Query: 173 K-GLNTQDLVTLVGAHTIGTTACQIFKYRLYNFXXXXXXXXXXXXXXXFIPQLRALCPEN 231
GL+ QD+V L G HTIG +
Sbjct: 147 AMGLSDQDIVALSGGHTIGAAHKE------------------------------------ 170
Query: 232 GDGARRVALD---TGSPNRFDTSFFSNLRNGR--GVLE--SDQKLWSDASTKAVVQRFLG 284
R + T +P FD S+F+ L G G+L+ SD+ L +D+ + +V+++
Sbjct: 171 -----RSGFEGPWTSNPLIFDNSYFTELLTGEKDGLLQLPSDKALLTDSVFRPLVEKYAA 225
Query: 285 VRGLLGLTFNVEFGRSMVKMSNIG 308
+ F ++ + +K+S +G
Sbjct: 226 DEDV----FFADYAEAHLKLSELG 245
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 65/287 (22%), Positives = 105/287 (36%), Gaps = 60/287 (20%)
Query: 30 YSRSCPRAESIVKSTVQAHFRSDPTVAPGLLRMHFHDCFVHGCDASILINGPNTEKTAPP 89
Y ++ +A+ ++ F ++ AP +LR+ +H D GP P
Sbjct: 23 YQKAVEKAKKKLRG-----FIAEKRCAPLMLRLAWHSAGT--FDKGTKTGGPFGTIKHPA 75
Query: 90 ---NRLLRGYDVIDDAKSQIEAACPGIVSCADILALAARDSVVVTRGISWQVPTGRRDGR 146
+ G D+ ++A P I+S AD LA +V VT G GR D
Sbjct: 76 ELAHSANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK- 133
Query: 147 ISLASDTANLPGFTESVEAQKQKFLDK-GLNTQDLVTLVGAHTIGTTACQIFKYRLYNFX 205
LP T+ + + F GL QD+V L G HTIG + +
Sbjct: 134 -PEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKEASGF------ 186
Query: 206 XXXXXXXXXXXXXXFIPQLRALCPENGDGARRVALDTGSPNRFDTSFFSNLRNG--RGVL 263
+G T +P FD S+F+ L +G G+L
Sbjct: 187 ---------------------------EGPW-----TSNPLIFDNSYFTELLSGEKEGLL 214
Query: 264 E--SDQKLWSDASTKAVVQRFLGVRGLLGLTFNVEFGRSMVKMSNIG 308
+ SD+ L SD + +V ++ F ++ + K+S +G
Sbjct: 215 QLPSDKALLSDPVFRPLVDKYAADED----AFFADYAEAHQKLSELG 257
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 80/222 (36%), Gaps = 56/222 (25%)
Query: 95 GYDVIDDAKSQIEAACPGIVSCADILALAARDSVVVTRGISWQVPTGRRDGRISLASDTA 154
G D+ ++A P I+S AD LA +V VT G GR D
Sbjct: 84 GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK--PEPPPEG 140
Query: 155 NLPGFTESVEAQKQKFLDK-GLNTQDLVTLVGAHTIGTTACQIFKYRLYNFXXXXXXXXX 213
LP T+ + + F GL QD+V L G HTIG +
Sbjct: 141 RLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKE------------------ 182
Query: 214 XXXXXXFIPQLRALCPENGDGARRVALD---TGSPNRFDTSFFSNLRNG--RGVLE--SD 266
R + T +P FD S+F+ L +G G+L+ SD
Sbjct: 183 -----------------------RSGFEGPWTSNPLIFDNSYFTELLSGEKEGLLQLPSD 219
Query: 267 QKLWSDASTKAVVQRFLGVRGLLGLTFNVEFGRSMVKMSNIG 308
+ L SD + +V ++ F ++ + K+S +G
Sbjct: 220 KALLSDPVFRPLVDKYAADED----AFFADYAEAHQKLSELG 257
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 65/290 (22%), Positives = 104/290 (35%), Gaps = 66/290 (22%)
Query: 30 YSRSCPRAESIVKSTVQAHFRSDPTVAPGLLRMHFHDCFVHGCDASILINGPNTEKTAPP 89
Y ++ +A+ ++ F ++ AP +LR+ +H D GP P
Sbjct: 23 YQKAVEKAKKKLRG-----FIAEKRCAPLMLRLAWHSAGT--FDKGTKTGGPFGTIKHPA 75
Query: 90 ---NRLLRGYDVIDDAKSQIEAACPGIVSCADILALAARDSVVVTRGISWQVPTGRRDGR 146
+ G D+ ++A P I+S AD LA +V VT G GR D
Sbjct: 76 ELAHSANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK- 133
Query: 147 ISLASDTANLPGFTESVEAQKQKFLDK-GLNTQDLVTLVGAHTIGTTACQIFKYRLYNFX 205
LP T+ + + F GL QD+V L G HTIG +
Sbjct: 134 -PEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKE---------- 182
Query: 206 XXXXXXXXXXXXXXFIPQLRALCPENGDGARRVALD---TGSPNRFDTSFFSNLRNG--R 260
R + T +P FD S+F+ L +G
Sbjct: 183 -------------------------------RSGFEGPWTSNPLIFDNSYFTELLSGEKE 211
Query: 261 GVLE--SDQKLWSDASTKAVVQRFLGVRGLLGLTFNVEFGRSMVKMSNIG 308
G+L+ SD+ L SD + +V ++ F ++ + K+S +G
Sbjct: 212 GLLQLPSDKALLSDPVFRPLVDKYAADED----AFFADYAEAHQKLSELG 257
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 65/290 (22%), Positives = 104/290 (35%), Gaps = 66/290 (22%)
Query: 30 YSRSCPRAESIVKSTVQAHFRSDPTVAPGLLRMHFHDCFVHGCDASILINGPNTEKTAPP 89
Y ++ +A+ ++ F ++ AP +LR+ +H D GP P
Sbjct: 11 YQKAVEKAKKKLRG-----FIAEKRCAPLMLRLAWHSAGT--FDKGTKTGGPFGTIKHPA 63
Query: 90 ---NRLLRGYDVIDDAKSQIEAACPGIVSCADILALAARDSVVVTRGISWQVPTGRRDGR 146
+ G D+ ++A P I+S AD LA +V VT G GR D
Sbjct: 64 ELAHSANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK- 121
Query: 147 ISLASDTANLPGFTESVEAQKQKFLDK-GLNTQDLVTLVGAHTIGTTACQIFKYRLYNFX 205
LP T+ + + F GL QD+V L G HTIG +
Sbjct: 122 -PEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKE---------- 170
Query: 206 XXXXXXXXXXXXXXFIPQLRALCPENGDGARRVALD---TGSPNRFDTSFFSNLRNG--R 260
R + T +P FD S+F+ L +G
Sbjct: 171 -------------------------------RSGFEGPWTSNPLIFDNSYFTELLSGEKE 199
Query: 261 GVLE--SDQKLWSDASTKAVVQRFLGVRGLLGLTFNVEFGRSMVKMSNIG 308
G+L+ SD+ L SD + +V ++ F ++ + K+S +G
Sbjct: 200 GLLQLPSDKALLSDPVFRPLVDKYAADED----AFFADYAEAHQKLSELG 245
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 80/222 (36%), Gaps = 56/222 (25%)
Query: 95 GYDVIDDAKSQIEAACPGIVSCADILALAARDSVVVTRGISWQVPTGRRDGRISLASDTA 154
G D+ ++A P I+S AD LA +V VT G GR D
Sbjct: 72 GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK--PEPPPEG 128
Query: 155 NLPGFTESVEAQKQKFLDK-GLNTQDLVTLVGAHTIGTTACQIFKYRLYNFXXXXXXXXX 213
LP T+ + + F GL QD+V L G HTIG +
Sbjct: 129 RLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKE------------------ 170
Query: 214 XXXXXXFIPQLRALCPENGDGARRVALD---TGSPNRFDTSFFSNLRNG--RGVLE--SD 266
R + T +P FD S+F+ L +G G+L+ SD
Sbjct: 171 -----------------------RSGFEGPWTSNPLIFDNSYFTELLSGEKEGLLQLPSD 207
Query: 267 QKLWSDASTKAVVQRFLGVRGLLGLTFNVEFGRSMVKMSNIG 308
+ L SD + +V ++ F ++ + K+S +G
Sbjct: 208 KALLSDPVFRPLVDKYAADED----AFFADYAEAHQKLSELG 245
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 80/222 (36%), Gaps = 56/222 (25%)
Query: 95 GYDVIDDAKSQIEAACPGIVSCADILALAARDSVVVTRGISWQVPTGRRDGRISLASDTA 154
G D+ ++A P I+S AD LA +V VT G GR D
Sbjct: 84 GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK--PEPPPEG 140
Query: 155 NLPGFTESVEAQKQKFLDK-GLNTQDLVTLVGAHTIGTTACQIFKYRLYNFXXXXXXXXX 213
LP T+ + + F GL QD+V L G HTIG +
Sbjct: 141 RLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKE------------------ 182
Query: 214 XXXXXXFIPQLRALCPENGDGARRVALD---TGSPNRFDTSFFSNLRNG--RGVLE--SD 266
R + T +P FD S+F+ L +G G+L+ SD
Sbjct: 183 -----------------------RSGFEGPWTSNPLIFDNSYFTELLSGEKEGLLQLPSD 219
Query: 267 QKLWSDASTKAVVQRFLGVRGLLGLTFNVEFGRSMVKMSNIG 308
+ L SD + +V ++ F ++ + K+S +G
Sbjct: 220 KALLSDPVFRPLVDKYAADED----AFFADYAEAHQKLSELG 257
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 65/290 (22%), Positives = 104/290 (35%), Gaps = 66/290 (22%)
Query: 30 YSRSCPRAESIVKSTVQAHFRSDPTVAPGLLRMHFHDCFVHGCDASILINGPNTEKTAPP 89
Y ++ +A+ ++ F ++ AP +LR+ +H D GP P
Sbjct: 23 YQKAVEKAKKKLRG-----FIAEKRCAPLMLRLAWHSAGT--FDKGTKTGGPFGTIKHPA 75
Query: 90 ---NRLLRGYDVIDDAKSQIEAACPGIVSCADILALAARDSVVVTRGISWQVPTGRRDGR 146
+ G D+ ++A P I+S AD LA +V VT G GR D
Sbjct: 76 ELAHSANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK- 133
Query: 147 ISLASDTANLPGFTESVEAQKQKFLDK-GLNTQDLVTLVGAHTIGTTACQIFKYRLYNFX 205
LP T+ + + F GL QD+V L G HTIG +
Sbjct: 134 -PEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKE---------- 182
Query: 206 XXXXXXXXXXXXXXFIPQLRALCPENGDGARRVALD---TGSPNRFDTSFFSNLRNG--R 260
R + T +P FD S+F+ L +G
Sbjct: 183 -------------------------------RSGFEGPWTSNPLIFDNSYFTELLSGEKE 211
Query: 261 GVLE--SDQKLWSDASTKAVVQRFLGVRGLLGLTFNVEFGRSMVKMSNIG 308
G+L+ SD+ L SD + +V ++ F ++ + K+S +G
Sbjct: 212 GLLQLPSDKALLSDPVFRPLVDKYAADED----AFFADYAEAHQKLSELG 257
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 80/222 (36%), Gaps = 56/222 (25%)
Query: 95 GYDVIDDAKSQIEAACPGIVSCADILALAARDSVVVTRGISWQVPTGRRDGRISLASDTA 154
G D+ ++A P I+S AD LA +V VT G GR D
Sbjct: 84 GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK--PEPPPEG 140
Query: 155 NLPGFTESVEAQKQKFLDK-GLNTQDLVTLVGAHTIGTTACQIFKYRLYNFXXXXXXXXX 213
LP T+ + + F GL QD+V L G HTIG +
Sbjct: 141 RLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKE------------------ 182
Query: 214 XXXXXXFIPQLRALCPENGDGARRVALD---TGSPNRFDTSFFSNLRNG--RGVLE--SD 266
R + T +P FD S+F+ L +G G+L+ SD
Sbjct: 183 -----------------------RSGFEGPWTSNPLIFDNSYFTELLSGEKEGLLQLPSD 219
Query: 267 QKLWSDASTKAVVQRFLGVRGLLGLTFNVEFGRSMVKMSNIG 308
+ L SD + +V ++ F ++ + K+S +G
Sbjct: 220 KALLSDPVFRPLVDKYAADED----AFFADYAEAHQKLSELG 257
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 80/222 (36%), Gaps = 56/222 (25%)
Query: 95 GYDVIDDAKSQIEAACPGIVSCADILALAARDSVVVTRGISWQVPTGRRDGRISLASDTA 154
G D+ ++A P I+S AD LA +V VT G GR D
Sbjct: 72 GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK--PEPPPEG 128
Query: 155 NLPGFTESVEAQKQKFLDK-GLNTQDLVTLVGAHTIGTTACQIFKYRLYNFXXXXXXXXX 213
LP T+ + + F GL QD+V L G HTIG +
Sbjct: 129 RLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKE------------------ 170
Query: 214 XXXXXXFIPQLRALCPENGDGARRVALD---TGSPNRFDTSFFSNLRNG--RGVLE--SD 266
R + T +P FD S+F+ L +G G+L+ SD
Sbjct: 171 -----------------------RSGFEGPWTSNPLIFDNSYFTELLSGEKEGLLQLPSD 207
Query: 267 QKLWSDASTKAVVQRFLGVRGLLGLTFNVEFGRSMVKMSNIG 308
+ L SD + +V ++ F ++ + K+S +G
Sbjct: 208 KALLSDPVFRPLVDKYAADED----AFFADYAEAHQKLSELG 245
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 80/222 (36%), Gaps = 56/222 (25%)
Query: 95 GYDVIDDAKSQIEAACPGIVSCADILALAARDSVVVTRGISWQVPTGRRDGRISLASDTA 154
G D+ ++A P I+S AD LA +V VT G GR D
Sbjct: 72 GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK--PEPPPEG 128
Query: 155 NLPGFTESVEAQKQKFLDK-GLNTQDLVTLVGAHTIGTTACQIFKYRLYNFXXXXXXXXX 213
LP T+ + + F GL QD+V L G HTIG +
Sbjct: 129 RLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKE------------------ 170
Query: 214 XXXXXXFIPQLRALCPENGDGARRVALD---TGSPNRFDTSFFSNLRNG--RGVLE--SD 266
R + T +P FD S+F+ L +G G+L+ SD
Sbjct: 171 -----------------------RSGFEGPWTSNPLIFDNSYFTELLSGEKEGLLQLPSD 207
Query: 267 QKLWSDASTKAVVQRFLGVRGLLGLTFNVEFGRSMVKMSNIG 308
+ L SD + +V ++ F ++ + K+S +G
Sbjct: 208 KALLSDPVFRPLVDKYAADED----AFFADYAEAHQKLSELG 245
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 80/222 (36%), Gaps = 56/222 (25%)
Query: 95 GYDVIDDAKSQIEAACPGIVSCADILALAARDSVVVTRGISWQVPTGRRDGRISLASDTA 154
G D+ ++A P I+S AD LA +V VT G GR D
Sbjct: 84 GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK--PEPPPEG 140
Query: 155 NLPGFTESVEAQKQKFLDK-GLNTQDLVTLVGAHTIGTTACQIFKYRLYNFXXXXXXXXX 213
LP T+ + + F GL QD+V L G HTIG +
Sbjct: 141 RLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKE------------------ 182
Query: 214 XXXXXXFIPQLRALCPENGDGARRVALD---TGSPNRFDTSFFSNLRNG--RGVLE--SD 266
R + T +P FD S+F+ L +G G+L+ SD
Sbjct: 183 -----------------------RSGFEGPWTSNPLIFDNSYFTELLSGEKEGLLQLPSD 219
Query: 267 QKLWSDASTKAVVQRFLGVRGLLGLTFNVEFGRSMVKMSNIG 308
+ L SD + +V ++ F ++ + K+S +G
Sbjct: 220 KALLSDPVFRPLVDKYAADED----AFFADYAEAHQKLSELG 257
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 57/155 (36%), Gaps = 42/155 (27%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDADYVRTFFQ 159
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQIFKYRLYNFXXXXXXXXXXXXXXXFIPQLRALCPEN 231
+N +++V L+GAHT+G T + Y
Sbjct: 160 RLNMNDREVVALMGAHTLGKTHLKNSGY-------------------------------- 187
Query: 232 GDGARRVALDTGSPNRFDTSFFSNLRNGRGVLESD 266
+G T +PN FD SF+ NL N LE +
Sbjct: 188 -EGPW-----TANPNVFDNSFYLNLLNEDWKLEKN 216
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDADYVRTFFQ 159
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAHT+G T +
Sbjct: 160 RLNMNDREVVALMGAHTLGKTHLK 183
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDADYVRTFFQ 159
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAHT+G T +
Sbjct: 160 RLNMNDREVVALMGAHTLGKTHLK 183
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDADYVRTFFQ 159
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAHT+G T +
Sbjct: 160 RLNMNDREVVALMGAHTLGKTHLK 183
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDYDKDAGYVRTFFQ 159
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAH +G T +
Sbjct: 160 RLNMNDREVVALMGAHALGKTHLK 183
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRA--GRVDTPEDTTPDNGRLPDADKDADYVRTFFQ 159
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAH +G T +
Sbjct: 160 RLNMNDREVVALMGAHALGKTHLK 183
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 34.3 bits (77), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDADYVRTFFQ 159
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L GAHT+G T +
Sbjct: 160 RLNMNDREVVALSGAHTLGKTHLK 183
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site
pdb|2X08|A Chain A, Cytochrome C Peroxidase: Ascorbate Bound To The Engineered
Ascorbate Binding Site
Length = 293
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + + F
Sbjct: 101 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDADYVRTFFQ 158
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAH +G T +
Sbjct: 159 RLNMNDREVVALMGAHALGKTHLK 182
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + + F
Sbjct: 101 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDADYVRTFFQ 158
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAH +G T +
Sbjct: 159 RLNMNDREVVALMGAHALGKTHLK 182
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome
C Peroxidase
Length = 287
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + + F
Sbjct: 95 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDADYVRTFFQ 152
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAH +G T +
Sbjct: 153 RLNMNDREVVALMGAHALGKTHLK 176
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant
Length = 296
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDADYVRTFFQ 161
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAH +G T +
Sbjct: 162 RLNMNDREVVALMGAHALGKTHLK 185
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a
pdb|4A6Z|A Chain A, Cytochrome C Peroxidase With Bound Guaiacol
Length = 296
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDADYVRTFFQ 161
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAH +G T +
Sbjct: 162 RLNMNDREVVALMGAHALGKTHLK 185
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant
Length = 294
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDADYVRTFFQ 159
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAH +G T +
Sbjct: 160 RLNMNDREVVALMGAHALGKTHLK 183
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDADYVRTFFQ 159
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAH +G T +
Sbjct: 160 RLNMNDREVVALMGAHALGKTHLK 183
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDADYVRTFFQ 159
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAH +G T +
Sbjct: 160 RLNMNDREVVALMGAHALGKTHLK 183
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M25|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M26|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M27|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M28|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M29|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2A|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2B|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2C|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2D|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2E|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2F|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2G|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2H|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2I|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
Length = 291
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDADYVRTFFQ 156
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAH +G T +
Sbjct: 157 RLNMNDREVVALMGAHALGKTHLK 180
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDADYVRTFFQ 159
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAH +G T +
Sbjct: 160 RLNMNDREVVALMGAHALGKTHLK 183
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
Length = 296
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDADYVRTFFQ 161
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAH +G T +
Sbjct: 162 RLNMNDREVVALMGAHALGKTHLK 185
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDADYVRTFFQ 159
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAH +G T +
Sbjct: 160 RLNMNDREVVALMGAHALGKTHLK 183
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C
Peroxidase Mutant N184r Y36a
Length = 294
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDADYVRTFFQ 159
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAH +G T +
Sbjct: 160 RLNMNDREVVALMGAHALGKTHLK 183
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDADYVRTFFQ 159
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAH +G T +
Sbjct: 160 RLNMNDREVVALMGAHALGKTHLK 183
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol
Length = 296
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + + F
Sbjct: 104 ISSGDLFSLGGVTAVQEWQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDADYVRTFFQ 161
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAH +G T +
Sbjct: 162 RLNMNDREVVALMGAHALGKTHLK 185
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDMDKDAGYVRTFFQ 159
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAH +G T +
Sbjct: 160 RLNMNDREVVALMGAHALGKTHLK 183
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRA--GRVDTPEDTTPDNGRLPDADKDAGYVRTFFQ 161
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAH +G T +
Sbjct: 162 RLNMNDREVVALMGAHALGKTHLK 185
>pdb|2IA8|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
pdb|2ICV|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
Length = 291
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDAGYVRTFFQ 156
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAH +G T +
Sbjct: 157 RLNMNDREVVALMGAHALGKTELK 180
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDAGYVRTFFQ 159
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAH +G T +
Sbjct: 160 RLNMNDREVVALMGAHALGKTHLK 183
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDAGYVRTFFQ 156
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAH +G T +
Sbjct: 157 RLNMNDREVVALMGAHALGKTHLK 180
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
pdb|1BES|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDAGYVRTFFQ 156
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAH +G T +
Sbjct: 157 RLNMNDREVVALMGAHALGKTHLK 180
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDAGYVRTFFQ 159
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAH +G T +
Sbjct: 160 RLNMNDREVVALMGAHALGKTHLK 183
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDAGYVRTFFQ 156
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAH +G T +
Sbjct: 157 RLNMNDREVVALMGAHALGKTHLK 180
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDAGYVRTFFQ 161
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAH +G T +
Sbjct: 162 RLNMNDREVVALMGAHALGKTHLK 185
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDAGYVRTFFQ 161
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAH +G T +
Sbjct: 162 RLNMNDREVVALMGAHALGKTHLK 185
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDAGYVRTFFQ 156
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAH +G T +
Sbjct: 157 RLNMNDREVVALMGAHALGKTHLK 180
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDAGYVRTFFQ 161
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAH +G T +
Sbjct: 162 RLNMNDREVVALMGAHALGKTHLK 185
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDAGYVRTFFQ 161
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAH +G T +
Sbjct: 162 RLNMNDREVVALMGAHALGKTHLK 185
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + F
Sbjct: 100 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDAGYVRTFFQ 157
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAH +G T +
Sbjct: 158 RLNMNDREVVALMGAHALGKTHLK 181
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + F
Sbjct: 105 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDAGYVRTFFQ 162
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAH +G T +
Sbjct: 163 RLNMNDREVVALMGAHALGKTHLK 186
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDAGYVRTFFQ 156
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAH +G T +
Sbjct: 157 RLNMNDREVVALMGAHALGKTHLK 180
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + F
Sbjct: 105 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDAGYVRTFFQ 162
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAH +G T +
Sbjct: 163 RLNMNDREVVALMGAHALGKTHLK 186
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDAGYVRTFFQ 156
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAH +G T +
Sbjct: 157 RLNMNDREVVALMGAHALGKTHLK 180
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + F
Sbjct: 100 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDAGYVRTFFQ 157
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAH +G T +
Sbjct: 158 RLNMNDREVVALMGAHALGKTHLK 181
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
pdb|2JTI|A Chain A, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 294
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDAGYVRTFFQ 159
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAH +G T +
Sbjct: 160 RLNMNDREVVALMGAHALGKTHLK 183
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCB|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U74|A Chain A, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|C Chain C, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U75|A Chain A, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1U75|C Chain C, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|2BCN|A Chain A, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|2BCN|C Chain C, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|1CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDAGYVRTFFQ 161
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAH +G T +
Sbjct: 162 RLNMNDREVVALMGAHALGKTHLK 185
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
pdb|1BJ9|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDAGYVRTFFQ 156
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAH +G T +
Sbjct: 157 RLNMNDREVVALMGAHALGKTHLK 180
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDAGYVRTFFQ 159
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAH +G T +
Sbjct: 160 RLNMNDREVVALMGAHALGKTHLK 183
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDAGYVRTFFQ 159
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAH +G T +
Sbjct: 160 RLNMNDREVVALMGAHALGKTHLK 183
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDAGYVRTFFQ 161
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAH +G T +
Sbjct: 162 RLNMNDREVVALMGAHALGKTHLK 185
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDAGYVRTFFQ 161
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAH +G T +
Sbjct: 162 RLNMNDREVVALMGAHALGKTHLK 185
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + F
Sbjct: 105 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDAGYVRTFFQ 162
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAH +G T +
Sbjct: 163 RLNMNDREVVALMGAHALGKTHLK 186
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDAGYVRTFFQ 156
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAH +G T +
Sbjct: 157 RLNMNDREVVALMGAHALGKTHLK 180
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + F
Sbjct: 105 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDAGYVRTFFQ 162
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAH +G T +
Sbjct: 163 RLNMNDREVVALMGAHALGKTHLK 186
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer
Between The Oxyferryl Heme And Trp 191 In Cytochrome C
Peroxidase Compound Ii
Length = 296
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDAGYVRTFFQ 161
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAH +G T +
Sbjct: 162 RLNMNDREVVALMGAHALGKTHLK 185
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
Length = 291
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDAGYVRTFFQ 156
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAH +G T +
Sbjct: 157 RLNMNDREVVALMGAHALGKTHLK 180
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of
Cytochrome C Peroxidase Compound I
Length = 296
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDAGYVRTFFQ 161
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAH +G T +
Sbjct: 162 RLNMNDREVVALMGAHALGKTHLK 185
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDAGYVRTFFQ 161
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAH +G T +
Sbjct: 162 RLNMNDREVVALMGAHALGKTHLK 185
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDAGYVRTFFQ 156
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAH +G T +
Sbjct: 157 RLNMNDREVVALMGAHALGKTHLK 180
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDAGYVRTFFQ 159
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GAH +G T +
Sbjct: 160 RLNMNDREVVALMGAHALGKTHLK 183
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDAGYVRTFFQ 156
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L GAH +G T +
Sbjct: 157 RLNMNDREVVALKGAHALGKTHLK 180
>pdb|2PLY|A Chain A, Structure Of The Mrna Binding Fragment Of Elongation
Factor Selb In Complex With Secis Rna.
pdb|2PLY|B Chain B, Structure Of The Mrna Binding Fragment Of Elongation
Factor Selb In Complex With Secis Rna
Length = 258
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 143 RDGRISLASDTANLPGFTESVEAQKQKFL 171
R+GR+ LA++T L GFT S ++K L
Sbjct: 115 REGRLQLAANTVALAGFTPSFSETQKKLL 143
>pdb|2UWM|A Chain A, C-Terminal Domain(Wh2-Wh4) Of Elongation Factor Selb In
Complex With Secis Rna
pdb|2UWM|B Chain B, C-Terminal Domain(Wh2-Wh4) Of Elongation Factor Selb In
Complex With Secis Rna
Length = 258
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 143 RDGRISLASDTANLPGFTESVEAQKQKFL 171
R+GR+ LA++T L GFT S ++K L
Sbjct: 115 REGRLQLAANTVALAGFTPSFSETQKKLL 143
>pdb|1LVA|A Chain A, Crystal Structure Of A C-Terminal Fragment Of Moorella
Thermoacetica Elongation Factor Selb
Length = 258
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 143 RDGRISLASDTANLPGFTESVEAQKQKFL 171
R+GR+ LA++T L GFT S ++K L
Sbjct: 115 REGRLQLAANTVALAGFTPSFSETQKKLL 143
>pdb|1A05|A Chain A, Crystal Structure Of The Complex Of 3-Isopropylmalate
Dehydrogenase From Thiobacillus Ferrooxidans With 3-
Isopropylmalate
pdb|1A05|B Chain B, Crystal Structure Of The Complex Of 3-Isopropylmalate
Dehydrogenase From Thiobacillus Ferrooxidans With 3-
Isopropylmalate
Length = 358
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 155 NLPGFTESVEAQKQKFLDKGLNTQDLVTLVGAHTIGTTAC 194
N + + VEA Q+ LD+GL T D+ G IGT A
Sbjct: 308 NAEPWAQRVEAAVQRVLDQGLRTADIAA-PGTPVIGTKAM 346
>pdb|3KHX|A Chain A, Crystal Structure Of Staphylococcus Aureus
Metallopeptidase (SapepDAPE) IN THE APO-Form
pdb|3KHX|B Chain B, Crystal Structure Of Staphylococcus Aureus
Metallopeptidase (SapepDAPE) IN THE APO-Form
pdb|3KI9|A Chain A, Crystal Structure Of Staphylococcus Aureus
Metallopeptidase (SapepDAPE) IN THE MN2+ BOUND FORM
Length = 492
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 46 QAHFRSDPTVAPGLLRMHFHDCFVHGCDASILIN 79
Q H + D TV G+L + VHG D SI +N
Sbjct: 268 QNHLQGDSTVDSGILVLTVEGKAVHGMDPSIGVN 301
>pdb|3KHZ|A Chain A, Crystal Structure Of R350a Mutant Of Staphylococcus Aureus
Metallopeptidase (SapepDAPE) IN THE APO-Form
pdb|3KHZ|B Chain B, Crystal Structure Of R350a Mutant Of Staphylococcus Aureus
Metallopeptidase (SapepDAPE) IN THE APO-Form
Length = 492
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 46 QAHFRSDPTVAPGLLRMHFHDCFVHGCDASILIN 79
Q H + D TV G+L + VHG D SI +N
Sbjct: 268 QNHLQGDSTVDSGILVLTVEGKAVHGMDPSIGVN 301
>pdb|1CCE|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
pdb|1CCG|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
Length = 291
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDAGYVRTFFQ 156
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GA +G T +
Sbjct: 157 RLNMNDREVVALMGAGALGKTHLK 180
>pdb|1DS4|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
Ph 6, 100k
pdb|1DSG|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 5, Room Temperature.
pdb|1DSO|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 6, Room Temperature.
pdb|1DSP|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 7, Room Temperature
Length = 292
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + F
Sbjct: 100 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDAGYVRTFFQ 157
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GA +G T +
Sbjct: 158 RLNMNDREVVALMGAGALGKTHLK 181
>pdb|1DSE|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
With Phosphate Bound, Ph 6, 100k
Length = 292
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Query: 114 VSCADILALAARDSVVVTRG--ISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFL 171
+S D+ +L +V +G I W+ GR D D LP + + F
Sbjct: 100 ISSGDLFSLGGVTAVQEMQGPKIPWRC--GRVDTPEDTTPDNGRLPDADKDAGYVRTFFQ 157
Query: 172 DKGLNTQDLVTLVGAHTIGTTACQ 195
+N +++V L+GA +G T +
Sbjct: 158 RLNMNDREVVALMGAGALGKTHLK 181
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,669,168
Number of Sequences: 62578
Number of extensions: 327079
Number of successful extensions: 891
Number of sequences better than 100.0: 104
Number of HSP's better than 100.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 709
Number of HSP's gapped (non-prelim): 122
length of query: 325
length of database: 14,973,337
effective HSP length: 99
effective length of query: 226
effective length of database: 8,778,115
effective search space: 1983853990
effective search space used: 1983853990
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)