Query 020511
Match_columns 325
No_of_seqs 198 out of 1483
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 02:58:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020511.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020511hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 1E-109 3E-114 792.0 25.9 309 11-325 11-324 (324)
2 cd00693 secretory_peroxidase H 100.0 2E-101 5E-106 732.8 24.7 295 24-324 1-298 (298)
3 PF00141 peroxidase: Peroxidas 100.0 9.5E-73 2.1E-77 520.1 10.3 228 41-285 1-230 (230)
4 PLN02608 L-ascorbate peroxidas 100.0 3.5E-70 7.6E-75 514.3 21.0 230 39-321 15-256 (289)
5 cd00691 ascorbate_peroxidase A 100.0 8.3E-67 1.8E-71 486.0 19.3 225 36-310 11-251 (253)
6 PLN02364 L-ascorbate peroxidas 100.0 5.9E-66 1.3E-70 478.8 18.9 231 27-310 3-248 (250)
7 cd00692 ligninase Ligninase an 100.0 6.3E-65 1.4E-69 486.5 21.0 236 37-325 16-287 (328)
8 PLN02879 L-ascorbate peroxidas 100.0 5.2E-64 1.1E-68 465.2 19.5 220 39-311 18-249 (251)
9 cd00314 plant_peroxidase_like 100.0 3.1E-59 6.7E-64 435.9 17.5 222 40-306 2-255 (255)
10 cd00649 catalase_peroxidase_1 100.0 5E-56 1.1E-60 431.7 18.6 257 39-315 45-401 (409)
11 TIGR00198 cat_per_HPI catalase 100.0 8.5E-54 1.8E-58 439.6 19.3 255 39-313 55-406 (716)
12 cd08201 plant_peroxidase_like_ 100.0 3.3E-51 7.1E-56 379.6 10.7 219 41-306 27-264 (264)
13 PRK15061 catalase/hydroperoxid 100.0 8.8E-50 1.9E-54 408.0 18.7 258 38-315 56-414 (726)
14 cd08200 catalase_peroxidase_2 100.0 2.1E-39 4.6E-44 304.2 16.6 219 43-308 17-296 (297)
15 TIGR00198 cat_per_HPI catalase 100.0 4.6E-34 1E-38 294.1 16.9 220 40-309 429-710 (716)
16 PRK15061 catalase/hydroperoxid 100.0 1E-33 2.3E-38 290.1 17.2 220 43-309 442-722 (726)
17 COG0376 KatG Catalase (peroxid 100.0 1.6E-28 3.5E-33 242.0 17.5 247 40-306 71-414 (730)
18 COG0376 KatG Catalase (peroxid 99.5 1.1E-13 2.4E-18 137.7 10.7 217 43-308 452-725 (730)
19 PTZ00411 transaldolase-like pr 57.3 73 0.0016 31.3 9.1 59 131-189 180-252 (333)
20 PF11895 DUF3415: Domain of un 49.8 14 0.0003 28.8 2.2 19 292-310 2-20 (80)
21 COG3763 Uncharacterized protei 42.2 84 0.0018 24.0 5.3 30 39-68 23-52 (71)
22 TIGR00874 talAB transaldolase. 33.8 2.9E+02 0.0063 27.0 9.1 58 131-188 168-239 (317)
23 KOG0400 40S ribosomal protein 25.5 36 0.00079 29.1 1.2 32 162-193 32-64 (151)
24 PLN02161 beta-amylase 24.4 1E+02 0.0023 32.1 4.4 34 278-319 234-272 (531)
25 PRK12346 transaldolase A; Prov 23.9 76 0.0016 31.0 3.2 76 114-189 150-241 (316)
26 PF04225 OapA: Opacity-associa 22.9 77 0.0017 24.7 2.5 25 164-188 11-35 (85)
27 PRK12309 transaldolase/EF-hand 21.8 1.1E+02 0.0024 30.8 3.9 59 131-189 174-246 (391)
28 PRK13859 type IV secretion sys 20.6 69 0.0015 23.0 1.6 31 119-149 9-42 (55)
29 PRK00523 hypothetical protein; 20.3 2.3E+02 0.005 21.7 4.5 29 40-68 25-53 (72)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=1.2e-109 Score=792.02 Aligned_cols=309 Identities=79% Similarity=1.285 Sum_probs=288.8
Q ss_pred HHHHHHhhhhccCCCCcCcccCCCchHHHHHHHHHHHHHhcCCCCccchhhhhhccccccCCCceeecCCCCCCcCCCCC
Q 020511 11 FVAMAVTSVHCQAGTRVGFYSRSCPRAESIVKSTVQAHFRSDPTVAPGLLRMHFHDCFVHGCDASILINGPNTEKTAPPN 90 (325)
Q Consensus 11 ~~~~~~~~~~~~~~l~~~fY~~sCP~~e~iV~~~v~~~~~~~~~~a~~llRL~FHDcfv~GcDgSill~~~~~E~~~~~N 90 (325)
|++++.+...+.++|+++||++|||++|+||++.|++++.+||+++|++|||+||||||+||||||||+++..||++++|
T Consensus 11 ~~~~~~~~~~~~~~L~~~fY~~sCP~aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDaSvLl~~~~~Ek~a~~N 90 (324)
T PLN03030 11 LLAMMATTLVQGQGTRVGFYSTTCPQAESIVRKTVQSHFQSNPAIAPGLLRMHFHDCFVRGCDASILIDGSNTEKTALPN 90 (324)
T ss_pred HHHHHhcccchhccCccchhhCcCCCHHHHHHHHHHHHHhhCcccchhhhhhhhhhheecCCceEEeeCCCcccccCCCC
Confidence 33344444345577999999999999999999999999999999999999999999999999999999976689999999
Q ss_pred CCCchhhHHHHHHHHHHHhCCCCCcHHHHHHHhhhhhhhhcCCccccccCCCCCCCCCCcccCCCCCCCCCCHHHHHHHH
Q 020511 91 RLLRGYDVIDDAKSQIEAACPGIVSCADILALAARDSVVVTRGISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKF 170 (325)
Q Consensus 91 ~~L~g~~~I~~iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F 170 (325)
.+|+||++|+.||++||++||++||||||||+||||||+++|||.|+|++||||+++|.+.++.+||.|+.++++|++.|
T Consensus 91 ~~l~Gf~~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~~LP~p~~~~~~l~~~F 170 (324)
T PLN03030 91 LLLRGYDVIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDASNLPGFTDSIDVQKQKF 170 (324)
T ss_pred cCcchHHHHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCcccccCCcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999987765578999999999999999
Q ss_pred HHCCCCHHHHHHHhhcccccccccccccccccccCCCCCC-CCCCCCCcccHHHHhhcCCCCCCCCcccccCCCCCCccC
Q 020511 171 LDKGLNTQDLVTLVGAHTIGTTACQIFKYRLYNFTTTTAT-GADPTIDATFIPQLRALCPENGDGARRVALDTGSPNRFD 249 (325)
Q Consensus 171 ~~~Gls~~dlVaLsGaHTiG~~hc~~f~~Rl~~f~g~~~~-~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~FD 249 (325)
+++||+.+|||+||||||||++||.+|.+|||||+++ + .+||+||++|+.+|++.||..+++...+++|+.||.+||
T Consensus 171 ~~~Gl~~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~--~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FD 248 (324)
T PLN03030 171 AAKGLNTQDLVTLVGGHTIGTTACQFFRYRLYNFTTT--GNGADPSIDASFVPQLQALCPQNGDGSRRIALDTGSSNRFD 248 (324)
T ss_pred HHcCCCHHHheeeeeccccceeeeeccccccccccCC--CCCCCCchhHHHHHHHhccCCCCCCCCccccCCCCCCcccc
Confidence 9999999999999999999999999999999999876 3 479999999999999999964333457889999999999
Q ss_pred hHHHHHhhcCCcccchhhhhccCcchHHHHHHHhccC----CchhhHHHHHHHHHHHHHhcCCCCCCCCCcccccCccCC
Q 020511 250 TSFFSNLRNGRGVLESDQKLWSDASTKAVVQRFLGVR----GLLGLTFNVEFGRSMVKMSNIGVKTGTDGEIRKICSAIN 325 (325)
Q Consensus 250 n~Yy~~l~~~~gll~SD~~L~~d~~t~~~V~~yA~d~----~~~~~~F~~~Fa~Am~Km~~igv~tg~~GeiR~~C~~~n 325 (325)
|+||+||+.++|+|+|||+|+.|++|+++|++||.|+ + .|+++|++||+|||+|+|+||.+|||||+|+++|
T Consensus 249 n~Yy~nll~~rGlL~SDq~L~~d~~T~~~V~~~A~~~~~~~~----~F~~~Fa~AmvKMg~i~VlTG~~GEIRk~C~~vN 324 (324)
T PLN03030 249 ASFFSNLKNGRGILESDQKLWTDASTRTFVQRFLGVRGLAGL----NFNVEFGRSMVKMSNIGVKTGTNGEIRKVCSAIN 324 (324)
T ss_pred cHHHHHHHhcCCCcCCchHhhcCccHHHHHHHHhcccccchh----hhHHHHHHHHHHHccCCCCCCCCCceeccccccC
Confidence 9999999999999999999999999999999999874 5 8999999999999999999999999999999998
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=2.5e-101 Score=732.77 Aligned_cols=295 Identities=56% Similarity=0.940 Sum_probs=284.3
Q ss_pred CCCcCcccCCCchHHHHHHHHHHHHHhcCCCCccchhhhhhccccccCCCceeecCCCC---CCcCCCCCCCCchhhHHH
Q 020511 24 GTRVGFYSRSCPRAESIVKSTVQAHFRSDPTVAPGLLRMHFHDCFVHGCDASILINGPN---TEKTAPPNRLLRGYDVID 100 (325)
Q Consensus 24 ~l~~~fY~~sCP~~e~iV~~~v~~~~~~~~~~a~~llRL~FHDcfv~GcDgSill~~~~---~E~~~~~N~~L~g~~~I~ 100 (325)
||+++||++|||++|+||+++|++.+.++++++|++|||+||||||+||||||||+++. .|+++++|.+|+||++|+
T Consensus 1 ~L~~~~Y~~sCP~~e~iV~~~v~~~~~~~~~~a~~~lRl~FHDc~v~GcDaSill~~~~~~~~E~~~~~N~~l~g~~~i~ 80 (298)
T cd00693 1 QLSVGFYSKSCPNAESIVRSVVRAAVKADPRLAAALLRLHFHDCFVRGCDASVLLDSTANNTSEKDAPPNLSLRGFDVID 80 (298)
T ss_pred CCCcccccCCCCChHHHHHHHHHHHHHhCCCcCchhhhhhhHhhhccCcceeEEecCCCCCchhccCCCCCCcchhHHHH
Confidence 69999999999999999999999999999999999999999999999999999999753 799999999999999999
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHhhhhhhhhcCCccccccCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHCCCCHHHH
Q 020511 101 DAKSQIEAACPGIVSCADILALAARDSVVVTRGISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFLDKGLNTQDL 180 (325)
Q Consensus 101 ~iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~dl 180 (325)
.||+++|+.||++||||||||||||+||+++|||.|+|++||+|+.+|.+..+++||.|+.+++++++.|+++||+++||
T Consensus 81 ~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~G~~~~d~ 160 (298)
T cd00693 81 DIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDVGNLPSPFFSVSQLISLFASKGLTVTDL 160 (298)
T ss_pred HHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccccCCCCcccCHHHHHHHHHHcCCCHHHh
Confidence 99999999999999999999999999999999999999999999998766544689999999999999999999999999
Q ss_pred HHHhhcccccccccccccccccccCCCCCCCCCCCCCcccHHHHhhcCCCCCCCCcccccCCCCCCccChHHHHHhhcCC
Q 020511 181 VTLVGAHTIGTTACQIFKYRLYNFTTTTATGADPTIDATFIPQLRALCPENGDGARRVALDTGSPNRFDTSFFSNLRNGR 260 (325)
Q Consensus 181 VaLsGaHTiG~~hc~~f~~Rl~~f~g~~~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~FDn~Yy~~l~~~~ 260 (325)
|||+||||||++||.+|.+|||||+|+ +.+||+||+.|+..|++.||+.++++..+++|+.||.+|||+||++|+.++
T Consensus 161 VaL~GaHTiG~~hc~~f~~Rl~~f~g~--~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~~l~~~~ 238 (298)
T cd00693 161 VALSGAHTIGRAHCSSFSDRLYNFSGT--GDPDPTLDPAYAAQLRKKCPAGGDDDTLVPLDPGTPNTFDNSYYKNLLAGR 238 (298)
T ss_pred eeecccceeeeeecccccccccCCCCC--CCCCCCccHHHHHHhcCCCCCCCCCCccccCCCCCCCccccHHHHHHHhcc
Confidence 999999999999999999999999998 778999999999999999998666667889999999999999999999999
Q ss_pred cccchhhhhccCcchHHHHHHHhccCCchhhHHHHHHHHHHHHHhcCCCCCCCCCcccccCccC
Q 020511 261 GVLESDQKLWSDASTKAVVQRFLGVRGLLGLTFNVEFGRSMVKMSNIGVKTGTDGEIRKICSAI 324 (325)
Q Consensus 261 gll~SD~~L~~d~~t~~~V~~yA~d~~~~~~~F~~~Fa~Am~Km~~igv~tg~~GeiR~~C~~~ 324 (325)
|+|+|||+|+.|++|+++|++||.||+ .|+++|++||+||++|+|+||.+||||++|++|
T Consensus 239 glL~SD~~L~~d~~t~~~V~~~A~d~~----~F~~~Fa~Am~Kl~~l~v~tg~~GeiR~~C~~~ 298 (298)
T cd00693 239 GLLTSDQALLSDPRTRAIVNRYAANQD----AFFRDFAAAMVKMGNIGVLTGSQGEIRKNCRVV 298 (298)
T ss_pred cCccCCHHhccCccHHHHHHHHhhCHH----HHHHHHHHHHHHHhhcCCccCCCCccCCccccC
Confidence 999999999999999999999999999 999999999999999999999999999999975
No 3
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=9.5e-73 Score=520.06 Aligned_cols=228 Identities=54% Similarity=0.926 Sum_probs=208.5
Q ss_pred HHHHHHHHHhcCCCCccchhhhhhccccc-cCCCceeecCCCCCCcCCCCCCCCc-hhhHHHHHHHHHHHhCCCCCcHHH
Q 020511 41 VKSTVQAHFRSDPTVAPGLLRMHFHDCFV-HGCDASILINGPNTEKTAPPNRLLR-GYDVIDDAKSQIEAACPGIVSCAD 118 (325)
Q Consensus 41 V~~~v~~~~~~~~~~a~~llRL~FHDcfv-~GcDgSill~~~~~E~~~~~N~~L~-g~~~I~~iK~~le~~cp~~VScAD 118 (325)
||++|++++.++++++|+||||+|||||+ +|||||||+.. .|+++++|.+|+ ++++|+.||+++|++||++|||||
T Consensus 1 Vr~~v~~~~~~~~~~~~~~lRl~FHDc~~~~GcDgSil~~~--~e~~~~~N~gl~~~~~~i~~ik~~~~~~cp~~VS~AD 78 (230)
T PF00141_consen 1 VRSDVRAAFKKDPTLAPGLLRLAFHDCFVYGGCDGSILLFS--AEKDAPPNRGLRDGFDVIDPIKAKLEAACPGVVSCAD 78 (230)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTTHTSSSSGGGGST--TGGGSGGGTTHHHHHHHHHHHHHHHCHHSTTTS-HHH
T ss_pred CHHHHHHHHHHCcCccHHHHHHHccccccccccccceeccc--cccccccccCcceeeechhhHHhhhcccccCCCCHHH
Confidence 89999999999999999999999999999 99999999954 799999999998 999999999999999999999999
Q ss_pred HHHHhhhhhhhhcCCccccccCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHhhccccccccccccc
Q 020511 119 ILALAARDSVVVTRGISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFLDKGLNTQDLVTLVGAHTIGTTACQIFK 198 (325)
Q Consensus 119 ilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~dlVaLsGaHTiG~~hc~~f~ 198 (325)
||+||||+||+.+|||.|+|++||+|++++++.++.+||.|+.+++++++.|+++|||++|||||+||||||++||.+|.
T Consensus 79 iialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~e~VaLsGaHTiG~~~c~~f~ 158 (230)
T PF00141_consen 79 IIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGASNLPSPTDSVDQLLAFFARKGLSAEEMVALSGAHTIGRAHCSSFS 158 (230)
T ss_dssp HHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHHHHSSTTTSHHHHHHHHHHHTT--HHHHHHHHGGGGSTEESGGCTG
T ss_pred HHHHHhhhcccccccccccccccccccccccccccccccccccccchhhhhhhccccchhhhcceecccccccceecccc
Confidence 99999999999999999999999999999988543469999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCCCCCCcccHHHHhhcCCCCCCCCcccccCCCCCCccChHHHHHhhcCCcccchhhhhccCcchHHH
Q 020511 199 YRLYNFTTTTATGADPTIDATFIPQLRALCPENGDGARRVALDTGSPNRFDTSFFSNLRNGRGVLESDQKLWSDASTKAV 278 (325)
Q Consensus 199 ~Rl~~f~g~~~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~FDn~Yy~~l~~~~gll~SD~~L~~d~~t~~~ 278 (325)
||| + + +||+||+.|+.. .| ..+++. .+++| ||.+|||+||++++.++|+|+||++|++|++|+++
T Consensus 159 -rl~-~-~-----~dp~~d~~~~~~---~C-~~~~~~-~~~~d--tp~~fDN~Yy~~ll~~~gll~SD~~L~~d~~t~~~ 223 (230)
T PF00141_consen 159 -RLY-F-P-----PDPTMDPGYAGQ---NC-NSGGDN-GVPLD--TPTVFDNSYYKNLLNGRGLLPSDQALLNDPETRPI 223 (230)
T ss_dssp -GTS-C-S-----SGTTSTHHHHHH---SS-STSGCT-CEESS--STTS-SSHHHHHHHHTEEEEHHHHHHHHSTTHHHH
T ss_pred -ccc-c-c-----ccccccccccee---cc-CCCccc-ccccc--CCCcchhHHHHHHhcCCCcCHHHHHHhcCHHHHHH
Confidence 999 4 2 599999999988 99 433333 88898 99999999999999999999999999999999999
Q ss_pred HHHHhcc
Q 020511 279 VQRFLGV 285 (325)
Q Consensus 279 V~~yA~d 285 (325)
|++||+|
T Consensus 224 V~~yA~d 230 (230)
T PF00141_consen 224 VERYAQD 230 (230)
T ss_dssp HHHHHHT
T ss_pred HHHHhcC
Confidence 9999986
No 4
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=3.5e-70 Score=514.34 Aligned_cols=230 Identities=26% Similarity=0.404 Sum_probs=209.5
Q ss_pred HHHHHHHHHHHhcCCCCccchhhhhhcccc-------ccCCCceeecCCCCCCcCCCCCCCC-chhhHHHHHHHHHHHhC
Q 020511 39 SIVKSTVQAHFRSDPTVAPGLLRMHFHDCF-------VHGCDASILINGPNTEKTAPPNRLL-RGYDVIDDAKSQIEAAC 110 (325)
Q Consensus 39 ~iV~~~v~~~~~~~~~~a~~llRL~FHDcf-------v~GcDgSill~~~~~E~~~~~N~~L-~g~~~I~~iK~~le~~c 110 (325)
+.+++++ ..+.++|.++|.+|||+||||| ++||||||+++ .|+++++|.+| +||++|++||+++
T Consensus 15 ~~~~~~~-~~~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~---~E~~~~~N~gL~~g~~vid~iK~~~---- 86 (289)
T PLN02608 15 EKARRDL-RALIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNE---EEYSHGANNGLKIAIDLCEPVKAKH---- 86 (289)
T ss_pred HHHHHHH-HHHHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecc---cccCCccccchHHHHHHHHHHHHHc----
Confidence 3566666 4467899999999999999999 99999999996 59999999999 5999999999986
Q ss_pred CCCCcHHHHHHHhhhhhhhhcCCccccccCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHhhccccc
Q 020511 111 PGIVSCADILALAARDSVVVTRGISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFLDKGLNTQDLVTLVGAHTIG 190 (325)
Q Consensus 111 p~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~dlVaLsGaHTiG 190 (325)
++|||||||+||||+||+++|||.|+|++||+|++++++. ++||+|+.+++++++.|+++|||++|||+|+||||||
T Consensus 87 -~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~--~~LP~p~~~~~~l~~~F~~~Gl~~~D~VaLsGAHTiG 163 (289)
T PLN02608 87 -PKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACPEE--GRLPDAKKGAKHLRDVFYRMGLSDKDIVALSGGHTLG 163 (289)
T ss_pred -CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCCcc--CCCcCCCCCHHHHHHHHHHcCCCHHHHhhhccccccc
Confidence 4899999999999999999999999999999999998644 6899999999999999999999999999999999999
Q ss_pred ccccccccccccccCCCCCCCCCCCCCcccHHHHhhcCCCCCCCCcccccCCCCCCccChHHHHHhhcC--Ccc--cchh
Q 020511 191 TTACQIFKYRLYNFTTTTATGADPTIDATFIPQLRALCPENGDGARRVALDTGSPNRFDTSFFSNLRNG--RGV--LESD 266 (325)
Q Consensus 191 ~~hc~~f~~Rl~~f~g~~~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~FDn~Yy~~l~~~--~gl--l~SD 266 (325)
++||. |+ +|.| | . ..||.+|||+||++++.+ +|+ |+||
T Consensus 164 ~ahc~----r~-g~~g----------------------~----------~-~~Tp~~FDN~Yy~~ll~~~~~gll~L~SD 205 (289)
T PLN02608 164 RAHPE----RS-GFDG----------------------P----------W-TKEPLKFDNSYFVELLKGESEGLLKLPTD 205 (289)
T ss_pred ccccc----CC-CCCC----------------------C----------C-CCCCCccChHHHHHHHcCCcCCccccccC
Confidence 99994 54 3321 1 0 268999999999999998 788 7999
Q ss_pred hhhccCcchHHHHHHHhccCCchhhHHHHHHHHHHHHHhcCCCCCCCCCcccccC
Q 020511 267 QKLWSDASTKAVVQRFLGVRGLLGLTFNVEFGRSMVKMSNIGVKTGTDGEIRKIC 321 (325)
Q Consensus 267 ~~L~~d~~t~~~V~~yA~d~~~~~~~F~~~Fa~Am~Km~~igv~tg~~GeiR~~C 321 (325)
++|+.|++|+++|+.||.||+ +|+++|++||+||++|+|+||++||+.+.-
T Consensus 206 ~~L~~d~~T~~~V~~fA~~~~----~F~~~Fa~Am~Km~~lgvltg~~Ge~~~~~ 256 (289)
T PLN02608 206 KALLEDPEFRPYVELYAKDED----AFFRDYAESHKKLSELGFTPPSSAFKKKST 256 (289)
T ss_pred HhhhcChhHHHHHHHHhhCHH----HHHHHHHHHHHHHHcCCCCCCCCCcccccC
Confidence 999999999999999999999 999999999999999999999999998754
No 5
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=8.3e-67 Score=485.98 Aligned_cols=225 Identities=24% Similarity=0.361 Sum_probs=202.5
Q ss_pred hHHHHHHHHHHHHHhcCCCCccchhhhhhccccccCCCceeecCCCC------CCcCCCCCCCC-chhhHHHHHHHHHHH
Q 020511 36 RAESIVKSTVQAHFRSDPTVAPGLLRMHFHDCFVHGCDASILINGPN------TEKTAPPNRLL-RGYDVIDDAKSQIEA 108 (325)
Q Consensus 36 ~~e~iV~~~v~~~~~~~~~~a~~llRL~FHDcfv~GcDgSill~~~~------~E~~~~~N~~L-~g~~~I~~iK~~le~ 108 (325)
..++||+++|++.++ +++++|++|||+|||||+ ||+|++++... +|+++++|.+| +||++|+.||+++
T Consensus 11 ~~~~~V~~~v~~~~~-~~~~~~~llRl~FHDc~~--~d~s~~~~G~d~s~~~~~E~~~~~N~~L~~~~~~i~~iK~~~-- 85 (253)
T cd00691 11 KDLEAARNDIAKLID-DKNCAPILVRLAWHDSGT--YDKETKTGGSNGTIRFDPELNHGANAGLDIARKLLEPIKKKY-- 85 (253)
T ss_pred HHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhc--cccccCCCCCCccccchhhcCCccccchHHHHHHHHHHHHHc--
Confidence 457899999999999 999999999999999984 55444442211 59999999999 8999999999876
Q ss_pred hCCCCCcHHHHHHHhhhhhhhhcCCccccccCCCCCCCCCCcccC-CCCCCCCCCHHHHHHHHHHCCCCHHHHHHHhhcc
Q 020511 109 ACPGIVSCADILALAARDSVVVTRGISWQVPTGRRDGRISLASDT-ANLPGFTESVEAQKQKFLDKGLNTQDLVTLVGAH 187 (325)
Q Consensus 109 ~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~Gls~~dlVaLsGaH 187 (325)
| +||||||||||||+||+.+|||.|+|++||+|+.++....+ ++||.|+.+++++++.|+++|||++|||+|+|||
T Consensus 86 --~-~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~d~VaLsGaH 162 (253)
T cd00691 86 --P-DISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVFYRMGFNDQEIVALSGAH 162 (253)
T ss_pred --C-CCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHHHhcCCCHHHHHHhcccc
Confidence 4 89999999999999999999999999999999999987666 7899999999999999999999999999999999
Q ss_pred cccccccccccccccccCCCCCCCCCCCCCcccHHHHhhcCCCCCCCCcccccCCCCCCccChHHHHHhhcCCc------
Q 020511 188 TIGTTACQIFKYRLYNFTTTTATGADPTIDATFIPQLRALCPENGDGARRVALDTGSPNRFDTSFFSNLRNGRG------ 261 (325)
Q Consensus 188 TiG~~hc~~f~~Rl~~f~g~~~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~FDn~Yy~~l~~~~g------ 261 (325)
|||++||.. ++|.|. |..||.+|||+||+||+.++|
T Consensus 163 TiG~a~c~~-----~~~~g~---------------------------------~~~tp~~FDn~Yy~~ll~~~g~~~~~~ 204 (253)
T cd00691 163 TLGRCHKER-----SGYDGP---------------------------------WTKNPLKFDNSYFKELLEEDWKLPTPG 204 (253)
T ss_pred eeecccccC-----CCCCCC---------------------------------CCCCCCcccHHHHHHHhcCCCccCcCc
Confidence 999999943 233221 025899999999999999999
Q ss_pred --ccchhhhhccCcchHHHHHHHhccCCchhhHHHHHHHHHHHHHhcCCCC
Q 020511 262 --VLESDQKLWSDASTKAVVQRFLGVRGLLGLTFNVEFGRSMVKMSNIGVK 310 (325)
Q Consensus 262 --ll~SD~~L~~d~~t~~~V~~yA~d~~~~~~~F~~~Fa~Am~Km~~igv~ 310 (325)
+|+||++|+.|++|+++|+.||.|++ +|+++|++||+||++|+|.
T Consensus 205 ~~~L~sD~~L~~d~~t~~~v~~~a~~~~----~F~~~Fa~Am~Km~~l~v~ 251 (253)
T cd00691 205 LLMLPTDKALLEDPKFRPYVELYAKDQD----AFFKDYAEAHKKLSELGVP 251 (253)
T ss_pred ceechhhHHHHcCccHHHHHHHHhhCHH----HHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999 9999999999999999986
No 6
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=5.9e-66 Score=478.81 Aligned_cols=231 Identities=26% Similarity=0.435 Sum_probs=209.2
Q ss_pred cCcccCC--CchHHHHHHHHHHHHHhcCCCCccchhhhhhc-----ccccc--CCCceeecCCCCCCcCCCCCCCC-chh
Q 020511 27 VGFYSRS--CPRAESIVKSTVQAHFRSDPTVAPGLLRMHFH-----DCFVH--GCDASILINGPNTEKTAPPNRLL-RGY 96 (325)
Q Consensus 27 ~~fY~~s--CP~~e~iV~~~v~~~~~~~~~~a~~llRL~FH-----Dcfv~--GcDgSill~~~~~E~~~~~N~~L-~g~ 96 (325)
.+||..+ |+.+++.+++.+++.+ .+++++|.||||+|| ||+++ ||||||.++ .|+++++|.+| +||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~~---~E~~~~~N~gl~~~~ 78 (250)
T PLN02364 3 KNYPTVSEDYKKAVEKCRRKLRGLI-AEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRFD---AEQAHGANSGIHIAL 78 (250)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHccccCcCcCCCCCCCCcccccc---ccccCCCccCHHHHH
Confidence 4677644 8899999999999987 789999999999999 88876 999999775 59999999999 899
Q ss_pred hHHHHHHHHHHHhCCCCCcHHHHHHHhhhhhhhhcCCccccccCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHH-CCC
Q 020511 97 DVIDDAKSQIEAACPGIVSCADILALAARDSVVVTRGISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFLD-KGL 175 (325)
Q Consensus 97 ~~I~~iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~-~Gl 175 (325)
++|+.||+++ ++|||||||+||||+||+++|||.|+|++||+|++++.+. ++||.|+.++++|++.|++ +||
T Consensus 79 ~~i~~ik~~~-----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~--~~lP~p~~~~~~l~~~F~~~~Gl 151 (250)
T PLN02364 79 RLLDPIREQF-----PTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPPE--GRLPDATKGCDHLRDVFAKQMGL 151 (250)
T ss_pred HHHHHHHHHc-----CCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCccccccc--CCCCCCCcCHHHHHHHHHHhcCC
Confidence 9999999987 5899999999999999999999999999999999998764 6899999999999999997 599
Q ss_pred CHHHHHHHhhcccccccccccccccccccCCCCCCCCCCCCCcccHHHHhhcCCCCCCCCcccccCCCCCCccChHHHHH
Q 020511 176 NTQDLVTLVGAHTIGTTACQIFKYRLYNFTTTTATGADPTIDATFIPQLRALCPENGDGARRVALDTGSPNRFDTSFFSN 255 (325)
Q Consensus 176 s~~dlVaLsGaHTiG~~hc~~f~~Rl~~f~g~~~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~FDn~Yy~~ 255 (325)
|++|||||+||||||++|| .|+ +|.|. . ..||.+|||+||++
T Consensus 152 ~~~d~VaLsGaHTiG~~hc----~r~-~~~g~--------------------------------~-~~tp~~fDn~Yy~~ 193 (250)
T PLN02364 152 SDKDIVALSGAHTLGRCHK----DRS-GFEGA--------------------------------W-TSNPLIFDNSYFKE 193 (250)
T ss_pred CHHHheeeecceeeccccC----CCC-CCCCC--------------------------------C-CCCCCccchHHHHH
Confidence 9999999999999999999 454 33221 1 26899999999999
Q ss_pred hhcC--Ccccc--hhhhhccCcchHHHHHHHhccCCchhhHHHHHHHHHHHHHhcCCCC
Q 020511 256 LRNG--RGVLE--SDQKLWSDASTKAVVQRFLGVRGLLGLTFNVEFGRSMVKMSNIGVK 310 (325)
Q Consensus 256 l~~~--~gll~--SD~~L~~d~~t~~~V~~yA~d~~~~~~~F~~~Fa~Am~Km~~igv~ 310 (325)
|+.+ +|+|. ||++|+.|++|+.+|+.||.|++ +|+++|++||+||++|++-
T Consensus 194 ll~~~~~gll~l~sD~~L~~d~~T~~~v~~~a~~~~----~F~~~Fa~Am~Km~~lg~~ 248 (250)
T PLN02364 194 LLSGEKEGLLQLVSDKALLDDPVFRPLVEKYAADED----AFFADYAEAHMKLSELGFA 248 (250)
T ss_pred HhcCCcCCCccccchHHHccCchHHHHHHHHhhCHH----HHHHHHHHHHHHHHccCCC
Confidence 9999 89876 99999999999999999999999 9999999999999999974
No 7
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=6.3e-65 Score=486.46 Aligned_cols=236 Identities=26% Similarity=0.367 Sum_probs=212.8
Q ss_pred HHHHHHHHHHHHHhcCC---CCccchhhhhhccccc------------cCCCceeecCCCCCCcCCCCCCCCchhhHHHH
Q 020511 37 AESIVKSTVQAHFRSDP---TVAPGLLRMHFHDCFV------------HGCDASILINGPNTEKTAPPNRLLRGYDVIDD 101 (325)
Q Consensus 37 ~e~iV~~~v~~~~~~~~---~~a~~llRL~FHDcfv------------~GcDgSill~~~~~E~~~~~N~~L~g~~~I~~ 101 (325)
+|..|+++|++.+..+. ..|+.+|||+||||++ +|||||||++.+ .|+++++|.+|+ ++|+.
T Consensus 16 ~~~~v~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~-~E~~~~~N~gL~--~vvd~ 92 (328)
T cd00692 16 VWFDILDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDD-IETAFHANIGLD--EIVEA 92 (328)
T ss_pred chHHHHHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCc-ccccCCCCCCHH--HHHHH
Confidence 48899999999998554 4677799999999996 899999999854 699999999998 89999
Q ss_pred HHHHHHHhCCCCCcHHHHHHHhhhhhhhh-cCCccccccCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHCCCCHHHH
Q 020511 102 AKSQIEAACPGIVSCADILALAARDSVVV-TRGISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFLDKGLNTQDL 180 (325)
Q Consensus 102 iK~~le~~cp~~VScADilalAar~av~~-~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~dl 180 (325)
+|..+|+.| |||||||+||||+||+. .|||.|+|++||+|++++.+. ++||.|+.++++|++.|+++||+++||
T Consensus 93 lk~~~e~~c---VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~~~--g~LP~p~~sv~~l~~~F~~~Gf~~~E~ 167 (328)
T cd00692 93 LRPFHQKHN---VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPAPD--GLVPEPFDSVDKILARFADAGFSPDEL 167 (328)
T ss_pred HHHHHHhcC---cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCcc--cCCCCCCCCHHHHHHHHHHcCCCHHHH
Confidence 999999998 99999999999999995 599999999999999998765 689999999999999999999999999
Q ss_pred HHHhhcccccccccccccccccccCCCCCCCCCCCCCcccHHHHhhcCCCCCCCCcccccCCCCCCccChHHHHHhh-cC
Q 020511 181 VTLVGAHTIGTTACQIFKYRLYNFTTTTATGADPTIDATFIPQLRALCPENGDGARRVALDTGSPNRFDTSFFSNLR-NG 259 (325)
Q Consensus 181 VaLsGaHTiG~~hc~~f~~Rl~~f~g~~~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~FDn~Yy~~l~-~~ 259 (325)
|+|+||||||++|. .||+++. +++| .||.+|||+||+|++ .+
T Consensus 168 VaLsGAHTiG~a~~-----------------~Dps~~g-------------------~p~D-~TP~~FDn~Yf~~ll~~~ 210 (328)
T cd00692 168 VALLAAHSVAAQDF-----------------VDPSIAG-------------------TPFD-STPGVFDTQFFIETLLKG 210 (328)
T ss_pred hhhcccccccccCC-----------------CCCCCCC-------------------CCCC-CCcchhcHHHHHHHHHcC
Confidence 99999999999982 3676641 4577 599999999999987 55
Q ss_pred Cc-------------------ccchhhhhccCcchHHHHHHHhccCCchhhHHHHHHHHHHHHHhcCCCCCCCCCccccc
Q 020511 260 RG-------------------VLESDQKLWSDASTKAVVQRFLGVRGLLGLTFNVEFGRSMVKMSNIGVKTGTDGEIRKI 320 (325)
Q Consensus 260 ~g-------------------ll~SD~~L~~d~~t~~~V~~yA~d~~~~~~~F~~~Fa~Am~Km~~igv~tg~~GeiR~~ 320 (325)
++ +|+||++|+.|++|+.+|++||+||+ +|+++|++||+||++|||. ...+.+
T Consensus 211 ~~~~g~~~~~~e~~~~~~g~~~L~SD~~L~~D~~T~~~v~~fa~dq~----~f~~~Fa~Am~KLs~lgv~----~~~l~d 282 (328)
T cd00692 211 TAFPGSGGNQGEVESPLPGEFRLQSDFLLARDPRTACEWQSFVNNQA----KMNAAFAAAMLKLSLLGQD----NISLTD 282 (328)
T ss_pred CCCCCccccccccccCccccccccchHHHhcCCcHHHHHHHHhcCHH----HHHHHHHHHHHHHHcCCCC----cchhcc
Confidence 55 49999999999999999999999999 9999999999999999987 347889
Q ss_pred CccCC
Q 020511 321 CSAIN 325 (325)
Q Consensus 321 C~~~n 325 (325)
|+.|+
T Consensus 283 cs~v~ 287 (328)
T cd00692 283 CSDVI 287 (328)
T ss_pred CcccC
Confidence 99875
No 8
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=5.2e-64 Score=465.21 Aligned_cols=220 Identities=26% Similarity=0.385 Sum_probs=198.3
Q ss_pred HHHHHHHHHHHhcCCCCccchhhhhhccccc-------cCCCceeecCCCCCCcCCCCCCCCc-hhhHHHHHHHHHHHhC
Q 020511 39 SIVKSTVQAHFRSDPTVAPGLLRMHFHDCFV-------HGCDASILINGPNTEKTAPPNRLLR-GYDVIDDAKSQIEAAC 110 (325)
Q Consensus 39 ~iV~~~v~~~~~~~~~~a~~llRL~FHDcfv-------~GcDgSill~~~~~E~~~~~N~~L~-g~~~I~~iK~~le~~c 110 (325)
+-++..+.+.+ .+...+|.+|||+||||.+ |||||||++. .|+++++|.||+ ++++|+.||+++
T Consensus 18 ~~~~~~~~~~~-~~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf~---~E~~~~~N~gL~~~~~~i~~iK~~~---- 89 (251)
T PLN02879 18 QRCKRKLRGLI-AEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHP---QELAHDANNGLDIAVRLLDPIKELF---- 89 (251)
T ss_pred HHHHHHHHHHH-hCCCchhHhHHHHHhhhccccCCCCCCCCCeeecCh---hhccCCCcCChHHHHHHHHHHHHHc----
Confidence 34577777776 4568999999999999974 8999999985 599999999997 999999999987
Q ss_pred CCCCcHHHHHHHhhhhhhhhcCCccccccCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHhhccccc
Q 020511 111 PGIVSCADILALAARDSVVVTRGISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFLDKGLNTQDLVTLVGAHTIG 190 (325)
Q Consensus 111 p~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~dlVaLsGaHTiG 190 (325)
++|||||||+||||+||+.+|||.|+|++||+|+..+.+. ++||.|+.+++++++.|+++||+++|||||+||||||
T Consensus 90 -~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~~~--~~lP~p~~~~~~l~~~F~~~Gl~~~dlVALsGaHTiG 166 (251)
T PLN02879 90 -PILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPPPE--GRLPQATKGVDHLRDVFGRMGLNDKDIVALSGGHTLG 166 (251)
T ss_pred -CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCCcc--cCCCCCCCCHHHHHHHHHHcCCCHHHHeeeecccccc
Confidence 5899999999999999999999999999999999988654 7899999999999999999999999999999999999
Q ss_pred ccccccccccccccCCCCCCCCCCCCCcccHHHHhhcCCCCCCCCcccccCCCCCCccChHHHHHhhcC--Ccc--cchh
Q 020511 191 TTACQIFKYRLYNFTTTTATGADPTIDATFIPQLRALCPENGDGARRVALDTGSPNRFDTSFFSNLRNG--RGV--LESD 266 (325)
Q Consensus 191 ~~hc~~f~~Rl~~f~g~~~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~FDn~Yy~~l~~~--~gl--l~SD 266 (325)
++||. | ++|.|. +| .||.+|||+||++|+.+ +|+ |+||
T Consensus 167 ~ah~~----r-~g~~g~--------------------------------~d-~tp~~FDN~Yy~~ll~~~~~gll~L~SD 208 (251)
T PLN02879 167 RCHKE----R-SGFEGA--------------------------------WT-PNPLIFDNSYFKEILSGEKEGLLQLPTD 208 (251)
T ss_pred ccccc----c-ccCCCC--------------------------------CC-CCccceeHHHHHHHHcCCcCCCccchhh
Confidence 99994 4 333221 22 58999999999999999 898 6799
Q ss_pred hhhccCcchHHHHHHHhccCCchhhHHHHHHHHHHHHHhcCCCCC
Q 020511 267 QKLWSDASTKAVVQRFLGVRGLLGLTFNVEFGRSMVKMSNIGVKT 311 (325)
Q Consensus 267 ~~L~~d~~t~~~V~~yA~d~~~~~~~F~~~Fa~Am~Km~~igv~t 311 (325)
++|+.|++|+++|++||.||+ +||++|++||+||++|++..
T Consensus 209 ~aL~~D~~t~~~V~~~A~d~~----~F~~~Fa~Am~KL~~lg~~~ 249 (251)
T PLN02879 209 KALLDDPLFLPFVEKYAADED----AFFEDYTEAHLKLSELGFAD 249 (251)
T ss_pred HHHhcCCcHHHHHHHHhhCHH----HHHHHHHHHHHHHHccCCCC
Confidence 999999999999999999999 99999999999999999853
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=3.1e-59 Score=435.91 Aligned_cols=222 Identities=33% Similarity=0.457 Sum_probs=204.6
Q ss_pred HHHHHHHHHHhcCCCCccchhhhhhcccccc--------CCCceeecCCCCCCcCCCCCCCC-chhhHHHHHHHHHHHhC
Q 020511 40 IVKSTVQAHFRSDPTVAPGLLRMHFHDCFVH--------GCDASILINGPNTEKTAPPNRLL-RGYDVIDDAKSQIEAAC 110 (325)
Q Consensus 40 iV~~~v~~~~~~~~~~a~~llRL~FHDcfv~--------GcDgSill~~~~~E~~~~~N~~L-~g~~~I~~iK~~le~~c 110 (325)
.|++.|++.+.+++.+++++|||+||||++. ||||||++++ |+++++|.+| +++++|+.||.++|.
T Consensus 2 ~v~~~l~~~~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~~---e~~~~~N~~l~~~~~~l~~ik~~~~~-- 76 (255)
T cd00314 2 AIKAILEDLITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFEP---ELDRPENGGLDKALRALEPIKSAYDG-- 76 (255)
T ss_pred hHHHHHHHHHHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEeccc---cccCcccccHHHHHHHHHHHHHHcCC--
Confidence 5888999999999999999999999999996 9999999984 9999999996 899999999999988
Q ss_pred CCCCcHHHHHHHhhhhhhhhc--CCccccccCCCCCCCCCC--cccC-CCCCCCCCCHHHHHHHHHHCCCCHHHHHHHh-
Q 020511 111 PGIVSCADILALAARDSVVVT--RGISWQVPTGRRDGRISL--ASDT-ANLPGFTESVEAQKQKFLDKGLNTQDLVTLV- 184 (325)
Q Consensus 111 p~~VScADilalAar~av~~~--GGP~~~v~~GR~D~~~s~--~~~~-~~lP~p~~~~~~l~~~F~~~Gls~~dlVaLs- 184 (325)
|++|||||||++|+++||+.+ |||.|+|++||+|++.+. ...+ .++|.|+.+++++++.|+++||+++|||||+
T Consensus 77 ~~~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F~~~Gl~~~e~VAL~~ 156 (255)
T cd00314 77 GNPVSRADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKFKRMGLSPSELVALSA 156 (255)
T ss_pred CCcccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHHHHcCCCHHHHHhhcc
Confidence 899999999999999999999 999999999999999664 2233 6789999999999999999999999999999
Q ss_pred hcccc-cccccccccccccccCCCCCCCCCCCCCcccHHHHhhcCCCCCCCCcccccCCCCCCccChHHHHHhhcCC---
Q 020511 185 GAHTI-GTTACQIFKYRLYNFTTTTATGADPTIDATFIPQLRALCPENGDGARRVALDTGSPNRFDTSFFSNLRNGR--- 260 (325)
Q Consensus 185 GaHTi-G~~hc~~f~~Rl~~f~g~~~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~FDn~Yy~~l~~~~--- 260 (325)
||||| |++||..|..|+ | .+|+.||.+|||+||++++.++
T Consensus 157 GaHti~G~~~~~~~~~~~--------------------------~----------~~~~~tp~~fDN~yy~~l~~~~~~~ 200 (255)
T cd00314 157 GAHTLGGKNHGDLLNYEG--------------------------S----------GLWTSTPFTFDNAYFKNLLDMNWEW 200 (255)
T ss_pred CCeeccCcccCCCCCccc--------------------------C----------CCCCCCCCccchHHHHHHhcCCccc
Confidence 99999 999998776553 1 1345799999999999999998
Q ss_pred -------------cccchhhhhccCcchHHHHHHHhccCCchhhHHHHHHHHHHHHHhc
Q 020511 261 -------------GVLESDQKLWSDASTKAVVQRFLGVRGLLGLTFNVEFGRSMVKMSN 306 (325)
Q Consensus 261 -------------gll~SD~~L~~d~~t~~~V~~yA~d~~~~~~~F~~~Fa~Am~Km~~ 306 (325)
++|+||++|+.|++|+.+|+.||.|++ +|+++|++||+||++
T Consensus 201 ~~~~~~~~~~~~~~~l~sD~~L~~d~~t~~~v~~ya~~~~----~f~~~Fa~a~~Km~~ 255 (255)
T cd00314 201 RVGSPDPDGVKGPGLLPSDYALLSDSETRALVERYASDQE----KFFEDFAKAWIKMVN 255 (255)
T ss_pred ccCCccCCCcccCCCchhhHHHhcCHhHHHHHHHHHhCHH----HHHHHHHHHHHHHcC
Confidence 899999999999999999999999999 999999999999984
No 10
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=5e-56 Score=431.67 Aligned_cols=257 Identities=19% Similarity=0.254 Sum_probs=227.7
Q ss_pred HHHHHHHHHHHhcC--------CCCccchhhhhhccccc-------cCCC-ceeecCCCCCCcCCCCCCCC-chhhHHHH
Q 020511 39 SIVKSTVQAHFRSD--------PTVAPGLLRMHFHDCFV-------HGCD-ASILINGPNTEKTAPPNRLL-RGYDVIDD 101 (325)
Q Consensus 39 ~iV~~~v~~~~~~~--------~~~a~~llRL~FHDcfv-------~GcD-gSill~~~~~E~~~~~N~~L-~g~~~I~~ 101 (325)
+.|++.|++.+... ...+|.+|||+|||+.+ ||++ |+|.+. .|++++.|.+| +++.+++.
T Consensus 45 ~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf~---pe~~~~~N~gL~~a~~~L~p 121 (409)
T cd00649 45 EALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRFA---PLNSWPDNVNLDKARRLLWP 121 (409)
T ss_pred HHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCccccc---cccCcHhhhhHHHHHHHHHH
Confidence 67899999998764 37999999999999985 8997 799998 49999999999 47888888
Q ss_pred HHHHHHHhCCCCCcHHHHHHHhhhhhhhhcCCccccccCCCCCCCCCCc-------------------------------
Q 020511 102 AKSQIEAACPGIVSCADILALAARDSVVVTRGISWQVPTGRRDGRISLA------------------------------- 150 (325)
Q Consensus 102 iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~------------------------------- 150 (325)
||++. |..||+||+|+||+.+|||.+|||.|++.+||.|...+..
T Consensus 122 ik~k~----~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~~~~~~~~~~~l~~pl~a~~m 197 (409)
T cd00649 122 IKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWLADKRYSGDRDLENPLAAVQM 197 (409)
T ss_pred HHHHc----CCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhcccccccccchhhccchhhhhc
Confidence 88865 5579999999999999999999999999999999975432
Q ss_pred -------ccCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHH-hhcccccccccccccccccccCCCCCCCCCCCCCcccHH
Q 020511 151 -------SDTANLPGFTESVEAQKQKFLDKGLNTQDLVTL-VGAHTIGTTACQIFKYRLYNFTTTTATGADPTIDATFIP 222 (325)
Q Consensus 151 -------~~~~~lP~p~~~~~~l~~~F~~~Gls~~dlVaL-sGaHTiG~~hc~~f~~Rl~~f~g~~~~~~dp~~d~~~~~ 222 (325)
+.+..||+|..++.+|++.|++||||++||||| +||||||++||..|.+||. +||++++.|++
T Consensus 198 gliyv~Pegp~gLPdP~~sa~~LR~~F~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~rlg---------~dP~~~~~~~~ 268 (409)
T cd00649 198 GLIYVNPEGPDGNPDPLAAAKDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASHVG---------PEPEAAPIEQQ 268 (409)
T ss_pred cccccCCCCCCCCCCCccCHHHHHHHHHHcCCCHHHHeeeccCCcceeecCcccccccCC---------CCCCcCHHHHH
Confidence 111379999999999999999999999999999 5999999999999999982 58999999999
Q ss_pred HHh--hcCCCCCC-CCcccccC---CCCCCccChHHHHHhhc------------------------------------CC
Q 020511 223 QLR--ALCPENGD-GARRVALD---TGSPNRFDTSFFSNLRN------------------------------------GR 260 (325)
Q Consensus 223 ~L~--~~Cp~~~~-~~~~~~~D---~~tp~~FDn~Yy~~l~~------------------------------------~~ 260 (325)
.|+ ..||...+ ++..+.+| +.||.+|||+||++|+. ++
T Consensus 269 gLgw~~~Cp~g~g~~t~~sglDG~Wt~tP~~FDN~YF~nLl~~eW~~~~~p~g~~Q~~~~~~~~~~~~~d~~~~~~~~~~ 348 (409)
T cd00649 269 GLGWKNSYGTGKGKDTITSGLEGAWTPTPTKWDNNYLKNLFGYEWELTKSPAGAWQWVPKNAAGENTVPDAHDPSKKHAP 348 (409)
T ss_pred hhcccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHHhccceeccCCCCcccccccCccccccCCCccccccccCc
Confidence 996 89997433 33455788 57999999999999998 56
Q ss_pred cccchhhhhccCcchHHHHHHHhccCCchhhHHHHHHHHHHHHH--hcCCCCCCCCC
Q 020511 261 GVLESDQKLWSDASTKAVVQRFLGVRGLLGLTFNVEFGRSMVKM--SNIGVKTGTDG 315 (325)
Q Consensus 261 gll~SD~~L~~d~~t~~~V~~yA~d~~~~~~~F~~~Fa~Am~Km--~~igv~tg~~G 315 (325)
+||+||++|+.|++|+++|++||.|++ +||++|++||+|| +.+|+++-..|
T Consensus 349 gmL~SD~aL~~Dp~tr~iV~~yA~d~~----~Ff~dFA~A~~KL~hrdmgp~~~~~g 401 (409)
T cd00649 349 MMLTTDLALRFDPEYEKISRRFLENPD----EFADAFAKAWFKLTHRDMGPKSRYLG 401 (409)
T ss_pred ccchhhHhhhcCccHHHHHHHHhcCHH----HHHHHHHHHHHHHccccCCchhhhcC
Confidence 999999999999999999999999999 9999999999999 69999986655
No 11
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=8.5e-54 Score=439.61 Aligned_cols=255 Identities=20% Similarity=0.223 Sum_probs=222.6
Q ss_pred HHHHHHHHHHHhcC--------CCCccchhhhhhccccc-------cCCC-ceeecCCCCCCcCCCCCCCC-chhhHHHH
Q 020511 39 SIVKSTVQAHFRSD--------PTVAPGLLRMHFHDCFV-------HGCD-ASILINGPNTEKTAPPNRLL-RGYDVIDD 101 (325)
Q Consensus 39 ~iV~~~v~~~~~~~--------~~~a~~llRL~FHDcfv-------~GcD-gSill~~~~~E~~~~~N~~L-~g~~~I~~ 101 (325)
+.|++.|++.+... ...+|-+|||+||++.+ |||+ |+|.+. +|++++.|.+| +.+.+++.
T Consensus 55 ~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf~---P~~sw~~N~~Ldka~~lL~p 131 (716)
T TIGR00198 55 AAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRFA---PLNSWPDNVNLDKARRLLWP 131 (716)
T ss_pred HHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceecc---cccCchhhhhHHHHHHHHHH
Confidence 46899999998864 36999999999999986 8985 789998 49999999988 46777777
Q ss_pred HHHHHHHhCCCCCcHHHHHHHhhhhhhhhcCCccccccCCCCCCCCCC--------------------------------
Q 020511 102 AKSQIEAACPGIVSCADILALAARDSVVVTRGISWQVPTGRRDGRISL-------------------------------- 149 (325)
Q Consensus 102 iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~-------------------------------- 149 (325)
||+ +||++|||||||+||+++||+.+|||.|+|.+||+|+..+.
T Consensus 132 Ik~----kyp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l~~~~~~~~~l~~p~a~~~~G 207 (716)
T TIGR00198 132 IKK----KYGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWLTSSREDRESLENPLAATEMG 207 (716)
T ss_pred HHH----HCCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchhhccccccccccccchhhhcc
Confidence 776 59999999999999999999999999999999999994321
Q ss_pred -----cccCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHh-hcccccccccccccccccccCCCCCCCCCCCCCcccHHH
Q 020511 150 -----ASDTANLPGFTESVEAQKQKFLDKGLNTQDLVTLV-GAHTIGTTACQIFKYRLYNFTTTTATGADPTIDATFIPQ 223 (325)
Q Consensus 150 -----~~~~~~lP~p~~~~~~l~~~F~~~Gls~~dlVaLs-GaHTiG~~hc~~f~~Rl~~f~g~~~~~~dp~~d~~~~~~ 223 (325)
++.+..+|+|..++++|++.|++||||++|||||+ ||||||++||.+|.+|| + +||++++.|++.
T Consensus 208 liyvnpeg~~~lPdP~~sa~~Lrd~F~rmGLnd~EmVALiaGaHTiGkaHc~s~~~rl--------g-~dP~~~~~~~~g 278 (716)
T TIGR00198 208 LIYVNPEGPDGHPDPLCTAQDIRTTFARMGMNDEETVALIAGGHTVGKCHGAGPAELI--------G-PDPEGAPIEEQG 278 (716)
T ss_pred ccccCcccccCCCCCCCCHHHHHHHHHHcCCChHHHeeeecCceeccccCCCcccccC--------C-CCCCcCHHHHHH
Confidence 11123699999999999999999999999999995 99999999999999998 2 699999999999
Q ss_pred HhhcCCCCC---CCCcccccC---CCCCCccChHHHHHhhcC----------------------------------Cccc
Q 020511 224 LRALCPENG---DGARRVALD---TGSPNRFDTSFFSNLRNG----------------------------------RGVL 263 (325)
Q Consensus 224 L~~~Cp~~~---~~~~~~~~D---~~tp~~FDn~Yy~~l~~~----------------------------------~gll 263 (325)
|+..||... +++..+.+| +.||.+|||+||+||+.+ .++|
T Consensus 279 Lg~~c~~~~g~g~dt~~sglDG~wT~TP~~FDN~YF~nLl~~~w~~~~s~~g~~q~~~~~~~~~~p~~~~~~~~~~~~mL 358 (716)
T TIGR00198 279 LGWHNQYGKGVGRDTMTSGLEVAWTTTPTQWDNGYFYMLFNYEWELKKSPAGAWQWEAVDAPEIIPDVEDPNKKHNPIML 358 (716)
T ss_pred hcccCCCCCCCCCCcccccCCCCCCCCCCccchHHHHHHhcCCceeeecCCCCceeeecccccccccccccccccccCcc
Confidence 999998632 223356787 679999999999999974 6899
Q ss_pred chhhhhccCcchHHHHHHHhccCCchhhHHHHHHHHHHHHHh--cCCCCCCC
Q 020511 264 ESDQKLWSDASTKAVVQRFLGVRGLLGLTFNVEFGRSMVKMS--NIGVKTGT 313 (325)
Q Consensus 264 ~SD~~L~~d~~t~~~V~~yA~d~~~~~~~F~~~Fa~Am~Km~--~igv~tg~ 313 (325)
+||++|..|++|+++|+.||.|++ +|+++|++||+||+ .+|++.-.
T Consensus 359 ~SDlaL~~Dp~~r~iVe~yA~d~~----~F~~dFA~Aw~KL~~~d~gp~~~y 406 (716)
T TIGR00198 359 DADLALRFDPEFRKISRRFLREPD----YFAEAFAKAWFKLTHRDMGPKSRY 406 (716)
T ss_pred chhHHhccCccHHHHHHHHhcCHH----HHHHHHHHHHHHHcccccCchhhh
Confidence 999999999999999999999999 99999999999998 56665433
No 12
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=3.3e-51 Score=379.59 Aligned_cols=219 Identities=21% Similarity=0.255 Sum_probs=180.6
Q ss_pred HHHHHHHHHhcCCCCccchhhhhhcccc-------ccCCCceeecCCCCCCcC-CCCCCCCchhhHHHHHHHHHHHhCCC
Q 020511 41 VKSTVQAHFRSDPTVAPGLLRMHFHDCF-------VHGCDASILINGPNTEKT-APPNRLLRGYDVIDDAKSQIEAACPG 112 (325)
Q Consensus 41 V~~~v~~~~~~~~~~a~~llRL~FHDcf-------v~GcDgSill~~~~~E~~-~~~N~~L~g~~~I~~iK~~le~~cp~ 112 (325)
|...-..+...+++++++||||+||||| ++||||||+++...+|+. .+.|.+|++|+.|+.+
T Consensus 27 v~~c~~~~~~~~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIlle~~~~En~G~~~n~~l~~~~~i~~~---------- 96 (264)
T cd08201 27 VTPCTDCAPGPGRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQYELDRPENIGSGFNTTLNFFVNFYSP---------- 96 (264)
T ss_pred cccccccCcCCCccHHHHHHHHHHHhhcCcccCCCCCCCCcceeecCCChhhccCchhhccccceeeccC----------
Confidence 3333344556789999999999999999 899999999986557877 5566788888887543
Q ss_pred CCcHHHHHHHhhhhhhhhcCCccccccCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHhh-cccccc
Q 020511 113 IVSCADILALAARDSVVVTRGISWQVPTGRRDGRISLASDTANLPGFTESVEAQKQKFLDKGLNTQDLVTLVG-AHTIGT 191 (325)
Q Consensus 113 ~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~dlVaLsG-aHTiG~ 191 (325)
+||||||||||+|+||+.+|||.|+|++||+|++.+.+. .||.|+.++++|++.|++|||+++|||+|+| |||||+
T Consensus 97 ~VScADiialAa~~AV~~~GGP~i~v~~GR~Da~~s~~~---glP~P~~~v~~l~~~Fa~~Gfs~~DmVaLsggaHTiG~ 173 (264)
T cd08201 97 RSSMADLIAMGVVTSVASCGGPVVPFRAGRIDATEAGQA---GVPEPQTDLGTTTESFRRQGFSTSEMIALVACGHTLGG 173 (264)
T ss_pred ccCHHHHHHHHHHHHHHHcCCCeecccccCCCccccccc---cCCCCccCHHHHHHHHHHcCCChHHHheeecCCeeeee
Confidence 599999999999999999999999999999999988765 4999999999999999999999999999995 999999
Q ss_pred cccccccccccccCCCCCCCCCCCCCcccHHHHhhcCCCCCCCCcccccCCCCCCccChHHHHHhhcCCc----------
Q 020511 192 TACQIFKYRLYNFTTTTATGADPTIDATFIPQLRALCPENGDGARRVALDTGSPNRFDTSFFSNLRNGRG---------- 261 (325)
Q Consensus 192 ~hc~~f~~Rl~~f~g~~~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~FDn~Yy~~l~~~~g---------- 261 (325)
+||..|.+++- |.. ..+...++| .||.+|||+||.+++.+..
T Consensus 174 ahc~~f~~~~~-----------~g~----------------~~~~~~p~d-stp~~FDn~~f~E~l~g~~~~~L~~~~~~ 225 (264)
T cd08201 174 VHSEDFPEIVP-----------PGS----------------VPDTVLQFF-DTTIQFDNKVVTEYLSGTTNNPLVVGPNN 225 (264)
T ss_pred cccccchhhcC-----------Ccc----------------ccCCCCCCC-CCccccchHHHHHHhcCCCCCceeecCCC
Confidence 99998877641 100 001234566 6999999999999997642
Q ss_pred ccchhhhhccCcchHHHHHHHhccCCchhhHHHHHHHHHHHHHhc
Q 020511 262 VLESDQKLWSDASTKAVVQRFLGVRGLLGLTFNVEFGRSMVKMSN 306 (325)
Q Consensus 262 ll~SD~~L~~d~~t~~~V~~yA~d~~~~~~~F~~~Fa~Am~Km~~ 306 (325)
.+.||..+|+.+.-.. ++..| +++ .|.+.++..+.||.+
T Consensus 226 ~~~sd~r~f~~d~n~t-~~~l~-~~~----~f~~~c~~~~~~mi~ 264 (264)
T cd08201 226 TTNSDLRIFSSDGNVT-MNELA-SPD----TFQKTCADILQRMID 264 (264)
T ss_pred CccchhhheecCccHH-HHHhc-ChH----HHHHHHHHHHHHHhC
Confidence 3689999998654433 46677 688 999999999999974
No 13
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=8.8e-50 Score=407.96 Aligned_cols=258 Identities=20% Similarity=0.260 Sum_probs=223.7
Q ss_pred HHHHHHHHHHHHhcC--------CCCccchhhhhhccccc-------cCCC-ceeecCCCCCCcCCCCCCCC-chhhHHH
Q 020511 38 ESIVKSTVQAHFRSD--------PTVAPGLLRMHFHDCFV-------HGCD-ASILINGPNTEKTAPPNRLL-RGYDVID 100 (325)
Q Consensus 38 e~iV~~~v~~~~~~~--------~~~a~~llRL~FHDcfv-------~GcD-gSill~~~~~E~~~~~N~~L-~g~~~I~ 100 (325)
.+.|++.|.+.+... ...+|-+|||+||++.+ |||+ |+|++. .|++++.|.+| +++.+++
T Consensus 56 ~~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf~---pe~~w~~N~gL~ka~~~L~ 132 (726)
T PRK15061 56 LEALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFA---PLNSWPDNVNLDKARRLLW 132 (726)
T ss_pred HHHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccCc---ccccchhhhhHHHHHHHHH
Confidence 356999999988764 36999999999999985 8997 799998 49999999999 5788888
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHhhhhhhhhcCCccccccCCCCCCCCCCc------------------------------
Q 020511 101 DAKSQIEAACPGIVSCADILALAARDSVVVTRGISWQVPTGRRDGRISLA------------------------------ 150 (325)
Q Consensus 101 ~iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~------------------------------ 150 (325)
.||++. |..||+||+|+||+..|||.+|||.|++.+||.|...+..
T Consensus 133 pik~ky----~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l~~~~r~~~~~~l~~pl~a~ 208 (726)
T PRK15061 133 PIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEWLGGDERYSGERDLENPLAAV 208 (726)
T ss_pred HHHHHh----CCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCccccccccccccccccccccchhhh
Confidence 888875 5679999999999999999999999999999999864332
Q ss_pred ---------ccCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHh-hcccccccccccccccccccCCCCCCCCCCCCCccc
Q 020511 151 ---------SDTANLPGFTESVEAQKQKFLDKGLNTQDLVTLV-GAHTIGTTACQIFKYRLYNFTTTTATGADPTIDATF 220 (325)
Q Consensus 151 ---------~~~~~lP~p~~~~~~l~~~F~~~Gls~~dlVaLs-GaHTiG~~hc~~f~~Rl~~f~g~~~~~~dp~~d~~~ 220 (325)
+.+..+|+|..++.+|++.|++||||++|||||+ ||||||++||..|.+|| + +||++++.+
T Consensus 209 ~mgliyvnpegp~glPdP~~sa~~lR~tF~RMGmnDeEtVALiaGgHT~GkaHca~~~~rl--------g-pdP~~a~~~ 279 (726)
T PRK15061 209 QMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGDASHV--------G-PEPEAAPIE 279 (726)
T ss_pred hccceecCCCCCCCCCCcccCHHHHHHHHHHcCCCHHHheeeccCCceeeeCCCcCccccc--------C-CCCCcCHHH
Confidence 1122489999999999999999999999999995 99999999999999998 2 699999999
Q ss_pred HHHHh--hcCCCCCC-CCcccccC---CCCCCccChHHHHHhhcC-----------------------------------
Q 020511 221 IPQLR--ALCPENGD-GARRVALD---TGSPNRFDTSFFSNLRNG----------------------------------- 259 (325)
Q Consensus 221 ~~~L~--~~Cp~~~~-~~~~~~~D---~~tp~~FDn~Yy~~l~~~----------------------------------- 259 (325)
++.|. ..||.+.+ ++.+..+| +.||.+|||+||++|+.+
T Consensus 280 ~qgLgw~~~c~~g~g~dt~tsGldG~Wt~tPt~fDN~YF~nLl~~~W~~~~sp~G~~qw~~~~~~~~~~~pd~~~~~~~~ 359 (726)
T PRK15061 280 EQGLGWKNSYGSGKGADTITSGLEGAWTTTPTQWDNGYFENLFGYEWELTKSPAGAWQWVPKDGAAEDTVPDAHDPSKKH 359 (726)
T ss_pred HHhccccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHhhCcceeccCCCccccccccCccccccCCccccccccc
Confidence 99985 89997433 33455688 679999999999999974
Q ss_pred -CcccchhhhhccCcchHHHHHHHhccCCchhhHHHHHHHHHHHHH--hcCCCCCCCCC
Q 020511 260 -RGVLESDQKLWSDASTKAVVQRFLGVRGLLGLTFNVEFGRSMVKM--SNIGVKTGTDG 315 (325)
Q Consensus 260 -~gll~SD~~L~~d~~t~~~V~~yA~d~~~~~~~F~~~Fa~Am~Km--~~igv~tg~~G 315 (325)
.+||+||++|..||+++++|++||.|++ +|+++|++||+|| ..+|+++-.-|
T Consensus 360 ~~~MLtSD~AL~~DP~~r~iV~~fA~d~~----~F~~~FA~A~~KL~hrdmgp~~ry~g 414 (726)
T PRK15061 360 APTMLTTDLALRFDPEYEKISRRFLENPE----EFADAFARAWFKLTHRDMGPKSRYLG 414 (726)
T ss_pred CcccccccHHhhcCCcHHHHHHHHhcCHH----HHHHHHHHHHHHHcccCCCchhhhcC
Confidence 5899999999999999999999999999 9999999999999 45776654433
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=2.1e-39 Score=304.21 Aligned_cols=219 Identities=19% Similarity=0.218 Sum_probs=179.3
Q ss_pred HHHHHHHhcCCCCccchhhhhhccccc-------cCCCce-eecCCCCCCcCCCCCCC--C-chhhHHHHHHHHHHHh-C
Q 020511 43 STVQAHFRSDPTVAPGLLRMHFHDCFV-------HGCDAS-ILINGPNTEKTAPPNRL--L-RGYDVIDDAKSQIEAA-C 110 (325)
Q Consensus 43 ~~v~~~~~~~~~~a~~llRL~FHDcfv-------~GcDgS-ill~~~~~E~~~~~N~~--L-~g~~~I~~iK~~le~~-c 110 (325)
+.+++.+.......+.||||+||++.+ ||++|+ |.|. +|++++.|.+ | +.+.+++.||++.... -
T Consensus 17 ~~lk~~i~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl~---pe~~w~~N~~~~L~~~~~~Le~ik~~~~~~~~ 93 (297)
T cd08200 17 AALKAKILASGLTVSELVSTAWASASTFRNSDKRGGANGARIRLA---PQKDWEVNEPEELAKVLAVLEGIQKEFNESQS 93 (297)
T ss_pred HHHHHHHHhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccCc---cccCcCccCcHHHHHHHHHHHHHHHHhccccc
Confidence 667777777778999999999999985 899998 9998 5999999998 8 5788899998876321 1
Q ss_pred C-CCCcHHHHHHHhhhhhhhhcCC-----ccccccCCCCCCCCCCcccC---CCCCCCC------------CCHHHHHHH
Q 020511 111 P-GIVSCADILALAARDSVVVTRG-----ISWQVPTGRRDGRISLASDT---ANLPGFT------------ESVEAQKQK 169 (325)
Q Consensus 111 p-~~VScADilalAar~av~~~GG-----P~~~v~~GR~D~~~s~~~~~---~~lP~p~------------~~~~~l~~~ 169 (325)
+ ..||.||+|+||+..|||.+|| |.|++.+||.|.+.+..... ..+|.+. .+.+.|++.
T Consensus 94 ~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td~~sf~~l~P~adg~rny~~~~~~~~~~~~Lrd~ 173 (297)
T cd08200 94 GGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTDVESFEVLEPKADGFRNYLKKGYRVPPEEMLVDK 173 (297)
T ss_pred CCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCCcccccccCCCCcccccccccCCCCCHHHHHHHH
Confidence 1 2699999999999999999999 99999999999987643211 1345332 235789999
Q ss_pred HHHCCCCHHHHHHHhhcc-cccccccccccccccccCCCCCCCCCCCCCcccHHHHhhcCCCCCCCCcccccCCCCCCcc
Q 020511 170 FLDKGLNTQDLVTLVGAH-TIGTTACQIFKYRLYNFTTTTATGADPTIDATFIPQLRALCPENGDGARRVALDTGSPNRF 248 (325)
Q Consensus 170 F~~~Gls~~dlVaLsGaH-TiG~~hc~~f~~Rl~~f~g~~~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~F 248 (325)
|.++|||++|||||+||| ++|..|..+ +.| |+ +.+|.+|
T Consensus 174 f~rlglsd~EmvaL~Gg~r~lG~~~~~s-------~~G----------------------~w-----------T~~p~~f 213 (297)
T cd08200 174 AQLLTLTAPEMTVLVGGLRVLGANYGGS-------KHG----------------------VF-----------TDRPGVL 213 (297)
T ss_pred HHhCCCChHHHhheecchhhcccCCCCC-------CCC----------------------CC-----------cCCCCcc
Confidence 999999999999999998 699877421 001 22 4689999
Q ss_pred ChHHHHHhhcCC--------------------c-----ccchhhhhccCcchHHHHHHHhcc--CCchhhHHHHHHHHHH
Q 020511 249 DTSFFSNLRNGR--------------------G-----VLESDQKLWSDASTKAVVQRFLGV--RGLLGLTFNVEFGRSM 301 (325)
Q Consensus 249 Dn~Yy~~l~~~~--------------------g-----ll~SD~~L~~d~~t~~~V~~yA~d--~~~~~~~F~~~Fa~Am 301 (325)
||.||+||+... | .+.+|..|.+|++.|++|+.||.| ++ +||+||++||
T Consensus 214 ~N~fF~nLLd~~~~W~~~~~~~~~~~~~dr~~g~~~~~~t~~Dl~l~sd~~~R~~ve~YA~dd~~~----~F~~DF~~A~ 289 (297)
T cd08200 214 TNDFFVNLLDMSTEWKPADEDDGLFEGRDRKTGEVKWTATRVDLVFGSNSELRAVAEVYASDDAQE----KFVKDFVAAW 289 (297)
T ss_pred ccHHHHHHhcccceeeecCCCCCceeeccCCCCceeeccChhhhhhccCHHHHHHHHHHhcccchh----HHHHHHHHHH
Confidence 999999998520 1 267899999999999999999998 88 9999999999
Q ss_pred HHHhcCC
Q 020511 302 VKMSNIG 308 (325)
Q Consensus 302 ~Km~~ig 308 (325)
.||+++.
T Consensus 290 ~Klmeld 296 (297)
T cd08200 290 TKVMNLD 296 (297)
T ss_pred HHHHhcC
Confidence 9999874
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=4.6e-34 Score=294.08 Aligned_cols=220 Identities=19% Similarity=0.226 Sum_probs=174.8
Q ss_pred HHHHHHHHH---HhcCCCCccchhhhhhccccc-------cCCCce-eecCCCCCCcCCCCC--CCC-chhhHHHHHHHH
Q 020511 40 IVKSTVQAH---FRSDPTVAPGLLRMHFHDCFV-------HGCDAS-ILINGPNTEKTAPPN--RLL-RGYDVIDDAKSQ 105 (325)
Q Consensus 40 iV~~~v~~~---~~~~~~~a~~llRL~FHDcfv-------~GcDgS-ill~~~~~E~~~~~N--~~L-~g~~~I~~iK~~ 105 (325)
+|+++|.+. +.......+.|||++||++.+ ||++|+ |.|. .|++++.| .+| +.+.+++.||++
T Consensus 429 ~v~~di~~lk~~i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl~---pe~~w~~N~p~gL~~vl~~Le~Ik~~ 505 (716)
T TIGR00198 429 LSEGDIKELKQQILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRLE---PQKNWPVNEPTRLAKVLAVLEKIQAE 505 (716)
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeecc---hhcCcccCCHHHHHHHHHHHHHHHHH
Confidence 345555553 445566789999999999985 899998 9998 49999999 788 578888888887
Q ss_pred HHHhCCCCCcHHHHHHHhhhhhhhhc---CCc--cccccCCCCCCCCCCcccCCCC---CCC------------CCCHHH
Q 020511 106 IEAACPGIVSCADILALAARDSVVVT---RGI--SWQVPTGRRDGRISLASDTANL---PGF------------TESVEA 165 (325)
Q Consensus 106 le~~cp~~VScADilalAar~av~~~---GGP--~~~v~~GR~D~~~s~~~~~~~l---P~p------------~~~~~~ 165 (325)
... +.||.||+|+||+..|||.+ ||| .|++.+||.|.+.......... |.+ ....+.
T Consensus 506 f~~---~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~td~~~~~~l~p~adgfRn~~~~~~~~~~~~~ 582 (716)
T TIGR00198 506 FAK---GPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMTDAESFTPLEPIADGFRNYLKRDYAVTPEEL 582 (716)
T ss_pred cCC---CcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCCCccccccCCCCCcccchhccccccCCHHHH
Confidence 631 36999999999999999999 898 5788999999987643211212 211 123567
Q ss_pred HHHHHHHCCCCHHHHHHHhhcc-cccccccccccccccccCCCCCCCCCCCCCcccHHHHhhcCCCCCCCCcccccCCCC
Q 020511 166 QKQKFLDKGLNTQDLVTLVGAH-TIGTTACQIFKYRLYNFTTTTATGADPTIDATFIPQLRALCPENGDGARRVALDTGS 244 (325)
Q Consensus 166 l~~~F~~~Gls~~dlVaLsGaH-TiG~~hc~~f~~Rl~~f~g~~~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~t 244 (325)
|++.|.++|||+.|||||+||| ++|++|..++ .| |+ +.+
T Consensus 583 l~d~a~~lglt~~EmvaL~Gg~r~lG~~~~~s~-------~G----------------------~~-----------T~~ 622 (716)
T TIGR00198 583 LLDKAQLLTLTAPEMTVLIGGMRVLGANHGGSK-------HG----------------------VF-----------TDR 622 (716)
T ss_pred HHHHHHhCCCChHHHHheecchhhccccCCCCC-------CC----------------------CC-----------cCC
Confidence 8899999999999999999995 9999985221 01 11 368
Q ss_pred CCccChHHHHHhhcCC--------------------c---c--cchhhhhccCcchHHHHHHHhccC--CchhhHHHHHH
Q 020511 245 PNRFDTSFFSNLRNGR--------------------G---V--LESDQKLWSDASTKAVVQRFLGVR--GLLGLTFNVEF 297 (325)
Q Consensus 245 p~~FDn~Yy~~l~~~~--------------------g---l--l~SD~~L~~d~~t~~~V~~yA~d~--~~~~~~F~~~F 297 (325)
|.+|||.||+||+... | + ..+|..|.+|++.|++|+.||+|+ + +||+||
T Consensus 623 p~~f~NdfF~~LLd~~~~w~~~~~~~~~~~~~dr~tg~~~~~~t~~Dl~~~sd~~lra~aE~YA~dd~~~----~F~~DF 698 (716)
T TIGR00198 623 VGVLSNDFFVNLLDMAYEWRAADNNRYLFEGGDRQTGEVKWTATRVDLVFGSNSILRAVAEVYAQDDARE----KFVKDF 698 (716)
T ss_pred CCccccHHHHHHhcCCceeeecCCCCceeeeecCCCCceeeccChhheeeccCHHHHHHHHHHhcccccc----hHHHHH
Confidence 9999999999998621 1 2 267999999999999999999997 7 999999
Q ss_pred HHHHHHHhcCCC
Q 020511 298 GRSMVKMSNIGV 309 (325)
Q Consensus 298 a~Am~Km~~igv 309 (325)
++||.|+++++-
T Consensus 699 ~~Aw~Klm~ldr 710 (716)
T TIGR00198 699 VAAWTKVMNLDR 710 (716)
T ss_pred HHHHHHHHhCCC
Confidence 999999999874
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=1e-33 Score=290.08 Aligned_cols=220 Identities=19% Similarity=0.227 Sum_probs=179.8
Q ss_pred HHHHHHHhcCCCCccchhhhhhccccc-------cCCCce-eecCCCCCCcCCCCCC--CC-chhhHHHHHHHHHHHhC-
Q 020511 43 STVQAHFRSDPTVAPGLLRMHFHDCFV-------HGCDAS-ILINGPNTEKTAPPNR--LL-RGYDVIDDAKSQIEAAC- 110 (325)
Q Consensus 43 ~~v~~~~~~~~~~a~~llRL~FHDcfv-------~GcDgS-ill~~~~~E~~~~~N~--~L-~g~~~I~~iK~~le~~c- 110 (325)
..+++.+....-..+.|||++||++.+ ||++|+ |+|. +|++++.|. +| +.+++++.||++....-
T Consensus 442 ~~lk~~i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl~---Pq~~w~~N~p~~L~~vl~~LE~Ik~~f~~~~~ 518 (726)
T PRK15061 442 AALKAKILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRLA---PQKDWEVNEPAQLAKVLAVLEGIQAEFNAAQS 518 (726)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceecc---cccCccccCHHHHHHHHHHHHHHHHHHhhccC
Confidence 566777777777899999999999985 899998 9998 499999999 88 57899999999885421
Q ss_pred -CCCCcHHHHHHHhhhhhhhhc---CC--ccccccCCCCCCCCCCcccC---CCCCCCC------------CCHHHHHHH
Q 020511 111 -PGIVSCADILALAARDSVVVT---RG--ISWQVPTGRRDGRISLASDT---ANLPGFT------------ESVEAQKQK 169 (325)
Q Consensus 111 -p~~VScADilalAar~av~~~---GG--P~~~v~~GR~D~~~s~~~~~---~~lP~p~------------~~~~~l~~~ 169 (325)
...||.||+|+||+..|||.+ || |.|++.+||.|.+....... ..+|.+. ...+.|++.
T Consensus 519 ~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~td~esf~~l~P~Adgfrny~~~~~~~~~e~~L~d~ 598 (726)
T PRK15061 519 GGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQTDVESFAVLEPKADGFRNYLKKGYSVSPEELLVDK 598 (726)
T ss_pred CCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCCCcccccccCCCCccccccccccCCCCHHHHHHHH
Confidence 136999999999999999998 68 99999999999987543321 2456533 134789999
Q ss_pred HHHCCCCHHHHHHHhhcc-cccccccccccccccccCCCCCCCCCCCCCcccHHHHhhcCCCCCCCCcccccCCCCCCcc
Q 020511 170 FLDKGLNTQDLVTLVGAH-TIGTTACQIFKYRLYNFTTTTATGADPTIDATFIPQLRALCPENGDGARRVALDTGSPNRF 248 (325)
Q Consensus 170 F~~~Gls~~dlVaLsGaH-TiG~~hc~~f~~Rl~~f~g~~~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~F 248 (325)
|.++|||+.|||||+||| ++|..|-.++ .| |+ +.+|.+|
T Consensus 599 a~~lglt~~EmvaL~Gg~r~Lg~~~~~S~-------~G----------------------~~-----------T~~p~~f 638 (726)
T PRK15061 599 AQLLTLTAPEMTVLVGGLRVLGANYGGSK-------HG----------------------VF-----------TDRPGVL 638 (726)
T ss_pred HHhCCCChHHHhheecchhhcccCCCCCC-------CC----------------------CC-----------cCCCCcc
Confidence 999999999999999997 7888773210 01 11 3589999
Q ss_pred ChHHHHHhhcCC--------------------c---c--cchhhhhccCcchHHHHHHHhcc--CCchhhHHHHHHHHHH
Q 020511 249 DTSFFSNLRNGR--------------------G---V--LESDQKLWSDASTKAVVQRFLGV--RGLLGLTFNVEFGRSM 301 (325)
Q Consensus 249 Dn~Yy~~l~~~~--------------------g---l--l~SD~~L~~d~~t~~~V~~yA~d--~~~~~~~F~~~Fa~Am 301 (325)
||.||+||+... | + +.+|..|.+|++.|++|+.||.| ++ +||+||++||
T Consensus 639 sNdfFvnLLdm~~~W~~~~~~~~~ye~~Dr~tg~~~~~~t~~Dlvfgsds~lRa~aEvYA~dd~~~----kF~~DF~~Aw 714 (726)
T PRK15061 639 TNDFFVNLLDMGTEWKPTDEDEEVYEGRDRKTGEVKWTATRVDLVFGSNSQLRALAEVYASDDAKE----KFVRDFVAAW 714 (726)
T ss_pred ccHHHHHHhcCCceeeecCCCCCceeeccCCCcceeeccChhheecccCHHHHHHHHHHhcccchh----HHHHHHHHHH
Confidence 999999998521 1 1 47899999999999999999998 88 9999999999
Q ss_pred HHHhcCCC
Q 020511 302 VKMSNIGV 309 (325)
Q Consensus 302 ~Km~~igv 309 (325)
.|+++++-
T Consensus 715 ~Kvmeldr 722 (726)
T PRK15061 715 TKVMNLDR 722 (726)
T ss_pred HHHHhCCC
Confidence 99999863
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.6e-28 Score=241.99 Aligned_cols=247 Identities=21% Similarity=0.262 Sum_probs=192.9
Q ss_pred HHHHHHHHHHhcCC--------CCccchhhhhhccccc-------cCCC-ceeecCCCCCCcCCCCCCCC-chhhHHHHH
Q 020511 40 IVKSTVQAHFRSDP--------TVAPGLLRMHFHDCFV-------HGCD-ASILINGPNTEKTAPPNRLL-RGYDVIDDA 102 (325)
Q Consensus 40 iV~~~v~~~~~~~~--------~~a~~llRL~FHDcfv-------~GcD-gSill~~~~~E~~~~~N~~L-~g~~~I~~i 102 (325)
.|+..+...+.... ...|-+|||+||-+.+ +|.. |...+. ++.++|.|.+| +++.++..|
T Consensus 71 Avk~Dl~aLmtdSqdWWPAD~GhYGplfIRmAWHsAGTYRi~DGRGGa~~G~qRFa---PlnSWPDN~nLDKarRLLWPI 147 (730)
T COG0376 71 AVKRDLKALMTDSQDWWPADFGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFA---PLNSWPDNANLDKARRLLWPI 147 (730)
T ss_pred HHHHHHHHHhhcccccCcccccccccceeeeeecccCceecccCCCCCCCCceecc---cccCCCcccchHHHHHHhhhH
Confidence 35555555554432 4889999999999986 4554 457776 48899999999 589999999
Q ss_pred HHHHHHhCCCCCcHHHHHHHhhhhhhhhcCCccccccCCCCCCCCCCc--------------------------------
Q 020511 103 KSQIEAACPGIVSCADILALAARDSVVVTRGISWQVPTGRRDGRISLA-------------------------------- 150 (325)
Q Consensus 103 K~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~-------------------------------- 150 (325)
|++. +..+|+||+|.||+..|++.+|++.+.+..||.|-..+..
T Consensus 148 KkKY----G~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~PlaavqMG 223 (730)
T COG0376 148 KKKY----GRKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAAVQMG 223 (730)
T ss_pred hHhh----cccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCccccccccccccccccccCchhhheee
Confidence 9875 6789999999999999999999999999999999866554
Q ss_pred ------ccCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHh-hcccccccccccccccccccCCCCCCCCCCCCCcccHHH
Q 020511 151 ------SDTANLPGFTESVEAQKQKFLDKGLNTQDLVTLV-GAHTIGTTACQIFKYRLYNFTTTTATGADPTIDATFIPQ 223 (325)
Q Consensus 151 ------~~~~~lP~p~~~~~~l~~~F~~~Gls~~dlVaLs-GaHTiG~~hc~~f~~Rl~~f~g~~~~~~dp~~d~~~~~~ 223 (325)
++++..|+|-.+..+++..|++|+++++|.|||+ ||||+|++|...-.+-+ +++|.-.+--.+.
T Consensus 224 LIYVNPEGpng~PDpl~aA~dIRetFaRMaMNDeETVALiaGGHtfGKtHGag~a~~v---------g~ePe~a~ie~qG 294 (730)
T COG0376 224 LIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASNV---------GPEPEAAPIEQQG 294 (730)
T ss_pred eEEeCCCCCCCCCChhhhHHHHHHHHHHhcCCcHhhhhhhhcccccccccCCCchhhc---------CCCccccchhhhc
Confidence 3335689999999999999999999999999998 79999999965422211 2466554444444
Q ss_pred Hh--hcCCCCCCCCc-cccc---CCCCCCccChHHHHHhhcC-----------------------------------Ccc
Q 020511 224 LR--ALCPENGDGAR-RVAL---DTGSPNRFDTSFFSNLRNG-----------------------------------RGV 262 (325)
Q Consensus 224 L~--~~Cp~~~~~~~-~~~~---D~~tp~~FDn~Yy~~l~~~-----------------------------------~gl 262 (325)
|- ..|-.+.+.++ +..+ -+.||++|||+||.+|... -.|
T Consensus 295 lGW~~~~g~G~G~dtitsGlE~~Wt~tPT~w~n~ff~~Lf~yEWeltksPAGa~Qw~~k~~~~~~~pd~~dp~~~~~p~M 374 (730)
T COG0376 295 LGWANTYGSGKGPDTITSGLEGAWTTTPTQWSNEFFENLFNYEWELTKSPAGAWQWDAKSAAAETIPDAHDPSKKHGPMM 374 (730)
T ss_pred cccccccCCCcCcccccccccccCCCCcchhhhHHHHHHhccceeeecCCCccccccccCccccCCCCCCCcccccCcee
Confidence 43 23332222222 1222 2468999999999999742 147
Q ss_pred cchhhhhccCcchHHHHHHHhccCCchhhHHHHHHHHHHHHHhc
Q 020511 263 LESDQKLWSDASTKAVVQRFLGVRGLLGLTFNVEFGRSMVKMSN 306 (325)
Q Consensus 263 l~SD~~L~~d~~t~~~V~~yA~d~~~~~~~F~~~Fa~Am~Km~~ 306 (325)
|++|.+|--||..+++.++|..||+ .|.+.|++||.||..
T Consensus 375 lttDlaLr~DP~Y~kIs~rf~e~pd----~F~~~FArAWfKLtH 414 (730)
T COG0376 375 LTTDLALRFDPEYEKISRRFLEDPD----EFADAFARAWFKLTH 414 (730)
T ss_pred eccchhhhcChHHHHHHHHHHhCHH----HHHHHHHHHHHHHhh
Confidence 9999999999999999999999999 999999999999975
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.49 E-value=1.1e-13 Score=137.69 Aligned_cols=217 Identities=20% Similarity=0.270 Sum_probs=156.9
Q ss_pred HHHHHHHhcCCCCccchhhhhhccccc-------cCCCce-eecCCCCCCcCCCCCC--CC-chhhHHHHHHHHHHHhCC
Q 020511 43 STVQAHFRSDPTVAPGLLRMHFHDCFV-------HGCDAS-ILINGPNTEKTAPPNR--LL-RGYDVIDDAKSQIEAACP 111 (325)
Q Consensus 43 ~~v~~~~~~~~~~a~~llRL~FHDcfv-------~GcDgS-ill~~~~~E~~~~~N~--~L-~g~~~I~~iK~~le~~cp 111 (325)
..+++.+.+..-....|+-.+|-.+-+ +|.+|. |.|. +.|+++.|. -| +-+.+++.|.+...
T Consensus 452 ~~lK~~IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirLa---PqkdWevN~P~~l~kvl~~le~iq~~fn---- 524 (730)
T COG0376 452 AALKAKILASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRLA---PQKDWEVNQPAELAKVLAVLEKIQKEFN---- 524 (730)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEeec---ccccCCCCCHHHHHHHHHHHHHHHHHhc----
Confidence 456666666667788899999988864 788885 9998 489999996 34 35677777777665
Q ss_pred CCCcHHHHHHHhhhhhhhhc---CCccc--cccCCCCCCCCCCcccC--CCC-CCC-----------CCC-HHHHHHHHH
Q 020511 112 GIVSCADILALAARDSVVVT---RGISW--QVPTGRRDGRISLASDT--ANL-PGF-----------TES-VEAQKQKFL 171 (325)
Q Consensus 112 ~~VScADilalAar~av~~~---GGP~~--~v~~GR~D~~~s~~~~~--~~l-P~p-----------~~~-~~~l~~~F~ 171 (325)
..||.||+|+|++..+||.+ +|-.+ ++.+||.|++....... ..| |-. ..+ -.-|++.-+
T Consensus 525 kkvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtDv~sf~~LeP~aDGfRNy~~~~~~~~pe~~LvDkAq 604 (730)
T COG0376 525 KKVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQTDVESFAVLEPIADGFRNYVKKDYVLTPEELLVDKAQ 604 (730)
T ss_pred CccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhcchhhhhcccccchhhhhhccCCCcCCHHHHHHHHHH
Confidence 46999999999999999985 77655 55699999976543211 111 211 112 344678888
Q ss_pred HCCCCHHHHHHHhhcc-cccccccccccccccccCCCCCCCCCCCCCcccHHHHhhcCCCCCCCCcccccCCCCCCccCh
Q 020511 172 DKGLNTQDLVTLVGAH-TIGTTACQIFKYRLYNFTTTTATGADPTIDATFIPQLRALCPENGDGARRVALDTGSPNRFDT 250 (325)
Q Consensus 172 ~~Gls~~dlVaLsGaH-TiG~~hc~~f~~Rl~~f~g~~~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~FDn 250 (325)
-.+||.-||++|+||- -+|. |+.|+ ...|.- ..|..+.|
T Consensus 605 lL~LtapemtVLiGGlRvLg~-----------n~g~s---------------------------~~GVfT--~~pg~Ltn 644 (730)
T COG0376 605 LLTLTAPEMTVLIGGLRVLGA-----------NYGGS---------------------------KHGVFT--DRPGVLTN 644 (730)
T ss_pred HhccCCccceEEEcceEeecc-----------CCCCC---------------------------ccceec--cCcccccc
Confidence 8999999999999875 3343 22221 223332 36888889
Q ss_pred HHHHHhhcC----------C----------cc-----cchhhhhccCcchHHHHHHHhccCCchhhHHHHHHHHHHHHHh
Q 020511 251 SFFSNLRNG----------R----------GV-----LESDQKLWSDASTKAVVQRFLGVRGLLGLTFNVEFGRSMVKMS 305 (325)
Q Consensus 251 ~Yy~~l~~~----------~----------gl-----l~SD~~L~~d~~t~~~V~~yA~d~~~~~~~F~~~Fa~Am~Km~ 305 (325)
.||.||+.. + |- -..|..+-+++..|.+.+.||.|.. .++|.+||++||.|..
T Consensus 645 dFFvnLlDM~~~W~~~~~~~~~feg~DrktG~~kwt~trvDLvfGsns~LRA~aEVYa~dda--~ekFv~DFvaaw~kVM 722 (730)
T COG0376 645 DFFVNLLDMGTEWKPTDDARGLFEGRDRKTGEVKWTATRVDLVFGSNSELRALAEVYASDDA--KEKFVKDFVAAWTKVM 722 (730)
T ss_pred hhhhhhhhccceeeeccccccceeccccccCceEeeeeEEeEEecCcHHHHHHHHHHhccch--HHHHHHHHHHHHHHHh
Confidence 999998752 1 21 2567777889999999999998654 2399999999999999
Q ss_pred cCC
Q 020511 306 NIG 308 (325)
Q Consensus 306 ~ig 308 (325)
++.
T Consensus 723 n~D 725 (730)
T COG0376 723 NLD 725 (730)
T ss_pred ccc
Confidence 875
No 19
>PTZ00411 transaldolase-like protein; Provisional
Probab=57.28 E-value=73 Score=31.34 Aligned_cols=59 Identities=17% Similarity=0.152 Sum_probs=36.5
Q ss_pred cCCccccccCCCCCCCCCCcccCCCCCC-CC---CCHHHHHHHHHHCCC----------CHHHHHHHhhcccc
Q 020511 131 TRGISWQVPTGRRDGRISLASDTANLPG-FT---ESVEAQKQKFLDKGL----------NTQDLVTLVGAHTI 189 (325)
Q Consensus 131 ~GGP~~~v~~GR~D~~~s~~~~~~~lP~-p~---~~~~~l~~~F~~~Gl----------s~~dlVaLsGaHTi 189 (325)
+|-..+..+.||-+-..-.+......+. .. ..+.++.+.|++.|+ +.+|+..|.|+|.+
T Consensus 180 AGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~~qi~~laG~D~l 252 (333)
T PTZ00411 180 AGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKTIVMGASFRNTGEILELAGCDKL 252 (333)
T ss_pred cCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCeEEEecccCCHHHHHHHHCCCEE
Confidence 4778889999998554222111111221 11 346778888888886 46777888888744
No 20
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=49.81 E-value=14 Score=28.85 Aligned_cols=19 Identities=21% Similarity=0.440 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHhcCCCC
Q 020511 292 TFNVEFGRSMVKMSNIGVK 310 (325)
Q Consensus 292 ~F~~~Fa~Am~Km~~igv~ 310 (325)
+..++|..||.||+.||-.
T Consensus 2 ~m~~~F~~am~KlavLG~d 20 (80)
T PF11895_consen 2 KMQSAFKAAMAKLAVLGHD 20 (80)
T ss_dssp HHHHHHHHHHHHHCTTTS-
T ss_pred hHHHHHHHHHHHHHHhcCC
Confidence 4678999999999998754
No 21
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.24 E-value=84 Score=23.98 Aligned_cols=30 Identities=13% Similarity=0.373 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhcCCCCccchhhhhhcccc
Q 020511 39 SIVKSTVQAHFRSDPTVAPGLLRMHFHDCF 68 (325)
Q Consensus 39 ~iV~~~v~~~~~~~~~~a~~llRL~FHDcf 68 (325)
-|.|+.+.+.++.+|.+-...||+.+--.+
T Consensus 23 fiark~~~k~lk~NPpine~~iR~M~~qmG 52 (71)
T COG3763 23 FIARKQMKKQLKDNPPINEEMIRMMMAQMG 52 (71)
T ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHhC
Confidence 389999999999999999999999886654
No 22
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=33.80 E-value=2.9e+02 Score=27.03 Aligned_cols=58 Identities=16% Similarity=0.138 Sum_probs=35.2
Q ss_pred cCCccccccCCCCCCCCCCcccCCCCCC----CCCCHHHHHHHHHHCCC----------CHHHHHHHhhccc
Q 020511 131 TRGISWQVPTGRRDGRISLASDTANLPG----FTESVEAQKQKFLDKGL----------NTQDLVTLVGAHT 188 (325)
Q Consensus 131 ~GGP~~~v~~GR~D~~~s~~~~~~~lP~----p~~~~~~l~~~F~~~Gl----------s~~dlVaLsGaHT 188 (325)
+|-..|..+.||-|-..-...+....+. .-..+.++.+.|++.|+ +.+++.+|.|+|.
T Consensus 168 AGa~~ISPFVgRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~~qv~~laG~d~ 239 (317)
T TIGR00874 168 AKVTLISPFVGRILDWYKAATGKKEYSIEEDPGVASVKKIYNYYKKHGYPTEVMGASFRNKEEILALAGCDR 239 (317)
T ss_pred cCCCEEEeecchHhHhhhhccCccccccccCchHHHHHHHHHHHHHcCCCcEEEeeccCCHHHHHHHHCCCe
Confidence 4778899999997653211110001111 22457778888988886 4566777777764
No 23
>KOG0400 consensus 40S ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=25.51 E-value=36 Score=29.09 Aligned_cols=32 Identities=34% Similarity=0.498 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHCCCCHHHH-HHHhhcccccccc
Q 020511 162 SVEAQKQKFLDKGLNTQDL-VTLVGAHTIGTTA 193 (325)
Q Consensus 162 ~~~~l~~~F~~~Gls~~dl-VaLsGaHTiG~~h 193 (325)
++.+.+-.|++|||++.++ |.|--+|-||+++
T Consensus 32 dvkeqI~K~akKGltpsqIGviLRDshGi~q~r 64 (151)
T KOG0400|consen 32 DVKEQIYKLAKKGLTPSQIGVILRDSHGIGQVR 64 (151)
T ss_pred HHHHHHHHHHHcCCChhHceeeeecccCcchhh
Confidence 4555666899999999998 5566999999875
No 24
>PLN02161 beta-amylase
Probab=24.40 E-value=1e+02 Score=32.10 Aligned_cols=34 Identities=26% Similarity=0.455 Sum_probs=25.5
Q ss_pred HHHHHhccCCchhhHHHHHHHHHHHHHh-----cCCCCCCCCCcccc
Q 020511 278 VVQRFLGVRGLLGLTFNVEFGRSMVKMS-----NIGVKTGTDGEIRK 319 (325)
Q Consensus 278 ~V~~yA~d~~~~~~~F~~~Fa~Am~Km~-----~igv~tg~~GeiR~ 319 (325)
-++.|. .|.+.|..+|.-+. +|.|=-|..||.|-
T Consensus 234 plq~Y~--------Dfm~SFr~~F~~~~~~~I~eI~VGlGP~GELRY 272 (531)
T PLN02161 234 AVQCYE--------DFMLSFSTKFEPYIGNVIEEISIGLGPSGELRY 272 (531)
T ss_pred HHHHHH--------HHHHHHHHHHHHHhcCceEEEEeccccCccccC
Confidence 357775 58888888887764 66677789999984
No 25
>PRK12346 transaldolase A; Provisional
Probab=23.90 E-value=76 Score=31.02 Aligned_cols=76 Identities=12% Similarity=0.093 Sum_probs=43.4
Q ss_pred CcHHHHHHHhhhhhhh--hcCCccccccCCCCCCCCCCcccCCCCCCC----CCCHHHHHHHHHHCCC----------CH
Q 020511 114 VSCADILALAARDSVV--VTRGISWQVPTGRRDGRISLASDTANLPGF----TESVEAQKQKFLDKGL----------NT 177 (325)
Q Consensus 114 VScADilalAar~av~--~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p----~~~~~~l~~~F~~~Gl----------s~ 177 (325)
|+|-=.+.+....|+. .+|-..|..+.||-|-..-.......++.. -..+.++.+.|++.|+ +.
T Consensus 150 I~~n~TliFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~T~Vm~ASfRn~ 229 (316)
T PRK12346 150 INCNLTLLFSFAQARACAEAGVFLISPFVGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYYKQHRYETIVMGASFRRT 229 (316)
T ss_pred CceeEEEecCHHHHHHHHHcCCCEEEecccHHHHhhhhccccccccccCCChHHHHHHHHHHHHHcCCCcEEEecccCCH
Confidence 4444333444433332 358888999999987643221100112111 2347778888888875 45
Q ss_pred HHHHHHhhcccc
Q 020511 178 QDLVTLVGAHTI 189 (325)
Q Consensus 178 ~dlVaLsGaHTi 189 (325)
.|+.+|.|+|.+
T Consensus 230 ~qi~alaG~d~l 241 (316)
T PRK12346 230 EQILALAGCDRL 241 (316)
T ss_pred HHHHHHhCCCEE
Confidence 777788887743
No 26
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=22.92 E-value=77 Score=24.66 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=18.3
Q ss_pred HHHHHHHHHCCCCHHHHHHHhhccc
Q 020511 164 EAQKQKFLDKGLNTQDLVTLVGAHT 188 (325)
Q Consensus 164 ~~l~~~F~~~Gls~~dlVaLsGaHT 188 (325)
+.|-..|.+.||+..||-.|+-+.-
T Consensus 11 DtLs~iF~~~gls~~dl~~v~~~~~ 35 (85)
T PF04225_consen 11 DTLSTIFRRAGLSASDLYAVLEADG 35 (85)
T ss_dssp --HHHHHHHTT--HHHHHHHHHHGG
T ss_pred CcHHHHHHHcCCCHHHHHHHHhccC
Confidence 5688899999999999999986653
No 27
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=21.80 E-value=1.1e+02 Score=30.77 Aligned_cols=59 Identities=17% Similarity=0.195 Sum_probs=36.4
Q ss_pred cCCccccccCCCCCCCCCCcccCCCCCCCCC----CHHHHHHHHHHCCC----------CHHHHHHHhhcccc
Q 020511 131 TRGISWQVPTGRRDGRISLASDTANLPGFTE----SVEAQKQKFLDKGL----------NTQDLVTLVGAHTI 189 (325)
Q Consensus 131 ~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~----~~~~l~~~F~~~Gl----------s~~dlVaLsGaHTi 189 (325)
+|-..|..+.||-|-..-.......+|...+ .+.++.+.|++.|+ +..++..|.|+|.+
T Consensus 174 AGa~~ISPfVgRi~dw~~~~~g~~~~~~~~dpGv~~v~~i~~~~~~~~~~T~Im~ASfRn~~~v~~laG~d~~ 246 (391)
T PRK12309 174 AGVTLISPFVGRILDWYKKETGRDSYPGAEDPGVQSVTQIYNYYKKFGYKTEVMGASFRNIGEIIELAGCDLL 246 (391)
T ss_pred cCCCEEEeecchhhhhhhhccCCCccccccchHHHHHHHHHHHHHhcCCCcEEEecccCCHHHHHHHHCCCee
Confidence 4778899999997763322111012443332 37778888888775 45666777777643
No 28
>PRK13859 type IV secretion system lipoprotein VirB7; Provisional
Probab=20.60 E-value=69 Score=22.96 Aligned_cols=31 Identities=29% Similarity=0.330 Sum_probs=23.4
Q ss_pred HHHHhhh---hhhhhcCCccccccCCCCCCCCCC
Q 020511 119 ILALAAR---DSVVVTRGISWQVPTGRRDGRISL 149 (325)
Q Consensus 119 ilalAar---~av~~~GGP~~~v~~GR~D~~~s~ 149 (325)
||+||+- |-+..|.||.+++-.||.-.+.|.
T Consensus 9 ~l~La~CqT~D~lAtckGpiFpLNVgrWqptpsD 42 (55)
T PRK13859 9 ALALAGCQTNDTLASCKGPIFPLNVGRWQPTPSD 42 (55)
T ss_pred HHHHHhccccCccccccCCccccccccccCChhh
Confidence 5667663 566678999999999998765554
No 29
>PRK00523 hypothetical protein; Provisional
Probab=20.31 E-value=2.3e+02 Score=21.70 Aligned_cols=29 Identities=14% Similarity=0.386 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhcCCCCccchhhhhhcccc
Q 020511 40 IVKSTVQAHFRSDPTVAPGLLRMHFHDCF 68 (325)
Q Consensus 40 iV~~~v~~~~~~~~~~a~~llRL~FHDcf 68 (325)
+-|..+++.++++|.+-...||.-|--..
T Consensus 25 iark~~~k~l~~NPpine~mir~M~~QMG 53 (72)
T PRK00523 25 VSKKMFKKQIRENPPITENMIRAMYMQMG 53 (72)
T ss_pred HHHHHHHHHHHHCcCCCHHHHHHHHHHhC
Confidence 78899999999999999999998876553
Done!