BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020512
(325 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2G4A|A Chain A, Solution Structure Of A Bromodomain From Ring3 Protein
Length = 116
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 65/104 (62%), Gaps = 3/104 (2%)
Query: 105 IRQFGTILRNITQHK---WAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYK 161
++ IL+ + K +AWPF +PVD LGL DY+++I PMD ST+K++ME ++Y+
Sbjct: 3 LKHCNVILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYR 62
Query: 162 NVREICTDVRLVFKNAMKYNDERSDVHVMAKTLLAKFEEKWLQL 205
+ +E DVRL+F N KYN DV MA+ L FE ++ ++
Sbjct: 63 DAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFRYAKM 106
>pdb|2DVV|A Chain A, Crystal Structure Of The Second Bromodomain Of The Human
Brd2 Protein
pdb|2E3K|A Chain A, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|B Chain B, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|C Chain C, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|D Chain D, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
Length = 112
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 65/104 (62%), Gaps = 3/104 (2%)
Query: 105 IRQFGTILRNITQHK---WAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYK 161
++ IL+ + K +AWPF +PVD LGL DY+++I PMD ST+K++ME ++Y+
Sbjct: 7 LKHCNGILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYR 66
Query: 162 NVREICTDVRLVFKNAMKYNDERSDVHVMAKTLLAKFEEKWLQL 205
+ +E DVRL+F N KYN DV MA+ L FE ++ ++
Sbjct: 67 DAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFRYAKM 110
>pdb|2I8N|A Chain A, Solution Structure Of The Second Bromodomain Of Brd4
Length = 114
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 60/87 (68%)
Query: 120 WAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMK 179
+AWPF +PVDV+ LGL DY ++I PMD STIK ++EA+EY++ +E DVRL+F N K
Sbjct: 21 YAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYK 80
Query: 180 YNDERSDVHVMAKTLLAKFEEKWLQLL 206
YN +V MA+ L FE ++ ++L
Sbjct: 81 YNPPDHEVVAMARKLQDVFEMRFAKML 107
>pdb|3ONI|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd2
In Complex With The Inhibitor Jq1
Length = 114
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 65/104 (62%), Gaps = 3/104 (2%)
Query: 105 IRQFGTILRNITQHK---WAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYK 161
++ IL+ + K +AWPF +PVD LGL DY+++I PMD ST+K++ME ++Y+
Sbjct: 9 LKHCNGILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYR 68
Query: 162 NVREICTDVRLVFKNAMKYNDERSDVHVMAKTLLAKFEEKWLQL 205
+ +E DVRL+F N KYN DV MA+ L FE ++ ++
Sbjct: 69 DAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFRYAKM 112
>pdb|2LSP|B Chain B, Solution Structures Of Brd4 Second Bromodomain With
Nf-Kb-K310ac Peptide
Length = 128
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 59/86 (68%)
Query: 120 WAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMK 179
+AWPF +PVDV+ LGL DY ++I PMD STIK ++EA+EY++ +E DVRL+F N K
Sbjct: 40 YAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYK 99
Query: 180 YNDERSDVHVMAKTLLAKFEEKWLQL 205
YN +V MA+ L FE ++ ++
Sbjct: 100 YNPPDHEVVAMARKLQDVFEMRFAKM 125
>pdb|2OUO|A Chain A, Crystal Structure Of The Bromo Domain 2 In Human
Bromodomain Containing Protein 4 (Brd4)
pdb|2YEM|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
pdb|2YEM|B Chain B, Crystal Structure Of The Second Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
Length = 130
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 59/86 (68%)
Query: 120 WAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMK 179
+AWPF +PVDV+ LGL DY ++I PMD STIK ++EA+EY++ +E DVRL+F N K
Sbjct: 42 YAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYK 101
Query: 180 YNDERSDVHVMAKTLLAKFEEKWLQL 205
YN +V MA+ L FE ++ ++
Sbjct: 102 YNPPDHEVVAMARKLQDVFEMRFAKM 127
>pdb|3JVL|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4
pdb|3JVM|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4
Length = 120
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 59/86 (68%)
Query: 120 WAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMK 179
+AWPF +PVDV+ LGL DY ++I PMD STIK ++E++EY++ +E DVRL+F N K
Sbjct: 29 YAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSNCYK 88
Query: 180 YNDERSDVHVMAKTLLAKFEEKWLQL 205
YN +V MA+ L FE ++ ++
Sbjct: 89 YNPPDHEVVAMARKLQDVFEMRFAKM 114
>pdb|2WP1|A Chain A, Structure Of Brdt Bromodomain 2 Bound To An Acetylated
Histone H3 Peptide
pdb|2WP1|B Chain B, Structure Of Brdt Bromodomain 2 Bound To An Acetylated
Histone H3 Peptide
Length = 126
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 51/80 (63%)
Query: 120 WAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMK 179
+AWPF PVD LGL +YY+V+ PMD TIK +M+ +EYK+ E DVRL+F N K
Sbjct: 34 YAWPFYNPVDADALGLHNYYDVVKNPMDLGTIKGKMDNQEYKDAYEFAADVRLMFMNCYK 93
Query: 180 YNDERSDVHVMAKTLLAKFE 199
YN +V MA+TL FE
Sbjct: 94 YNPPDHEVVAMARTLQDVFE 113
>pdb|2OO1|A Chain A, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|B Chain B, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|C Chain C, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|D Chain D, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|3S92|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd3
In Complex With The Inhibitor Jq1
Length = 113
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 64/104 (61%), Gaps = 3/104 (2%)
Query: 105 IRQFGTILRNITQHK---WAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYK 161
+R +ILR + K +AWPF +PVD + L L DY+++I PMD ST+K++M+ +EY
Sbjct: 9 LRYCDSILREMLSKKHAAYAWPFYKPVDAEALELHDYHDIIKHPMDLSTVKRKMDGREYP 68
Query: 162 NVREICTDVRLVFKNAMKYNDERSDVHVMAKTLLAKFEEKWLQL 205
+ + DVRL+F N KYN +V MA+ L FE ++ ++
Sbjct: 69 DAQGFAADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKM 112
>pdb|2E7N|A Chain A, Solution Structure Of The Second Bromodomain From Human
Bromodomain-Containing Protein 3
Length = 117
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 64/104 (61%), Gaps = 3/104 (2%)
Query: 105 IRQFGTILRNITQHK---WAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYK 161
+R +ILR + K +AWPF +PVD + L L DY+++I PMD ST+K++M+ +EY
Sbjct: 14 LRYCDSILREMLSKKHAAYAWPFYKPVDAEALELHDYHDIIKHPMDLSTVKRKMDGREYP 73
Query: 162 NVREICTDVRLVFKNAMKYNDERSDVHVMAKTLLAKFEEKWLQL 205
+ + DVRL+F N KYN +V MA+ L FE ++ ++
Sbjct: 74 DAQGFAADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKM 117
>pdb|2DWW|A Chain A, Crystal Structure Of Bromodomain-Containing Protein 4
Length = 114
Score = 84.3 bits (207), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 55/85 (64%)
Query: 120 WAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMK 179
+AWPF +PVDV+ LGL DY ++I P D STIK ++E++EY++ +E DVRL F N K
Sbjct: 27 YAWPFYKPVDVEALGLHDYCDIIKHPXDXSTIKSKLESREYRDAQEFGADVRLXFSNCYK 86
Query: 180 YNDERSDVHVMAKTLLAKFEEKWLQ 204
YN +V A+ L FE ++ +
Sbjct: 87 YNPPDHEVVAXARKLQDVFEXRFAK 111
>pdb|3JVJ|A Chain A, Crystal Structure Of The Bromodomain 1 In Mouse Brd4
pdb|3JVK|A Chain A, Crystal Structure Of Bromodomain 1 Of Mouse Brd4 In
Complex With Histone H3-K(Ac)14
pdb|3MUK|A Chain A, Crystal Structure Of Brd4 Bromodomain 1 With Propionylated
Histone H3- K(Prop)23
pdb|3MUL|A Chain A, Crystal Structure Of Brd4 Bromodomain 1 With Butyrylated
Histone H3- K(Buty)14
Length = 131
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 54/91 (59%)
Query: 111 ILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDV 170
+L+ + +H++AWPF QPVD L L DYY++I PMD TIKK++E Y N +E D
Sbjct: 33 VLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDF 92
Query: 171 RLVFKNAMKYNDERSDVHVMAKTLLAKFEEK 201
+F N YN D+ +MA+ L F +K
Sbjct: 93 NTMFTNCYIYNKPGDDIVLMAEALEKLFLQK 123
>pdb|4DON|A Chain A, Brd4 Bromodomain 1 Complex With A Fragment
3,4-dihydro-3-methyl-2(1h)- Quinazolinon
Length = 145
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 54/91 (59%)
Query: 111 ILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDV 170
+L+ + +H++AWPF QPVD L L DYY++I PMD TIKK++E Y N +E D
Sbjct: 49 VLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDF 108
Query: 171 RLVFKNAMKYNDERSDVHVMAKTLLAKFEEK 201
+F N YN D+ +MA+ L F +K
Sbjct: 109 NTMFTNCYIYNKPGDDIVLMAEALEKLFLQK 139
>pdb|2OSS|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein 4 (Brd4)
pdb|3MXF|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With The Inhibitor Jq1
pdb|3P5O|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Ibet Inhibitor
pdb|2YEL|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
pdb|3SVF|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Dihydro-Quinazolin Ligand
pdb|3SVG|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-Dimethylisoxazol Ligand
pdb|3ZYU|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With I-Bet151(Gsk1210151a)
pdb|3ZYU|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With I-Bet151(Gsk1210151a)
pdb|3U5J|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Alprazolam
pdb|3U5K|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|D Chain D, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5L|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Benzo-Triazepine Ligand (Bzt-7)
pdb|4A9L|A Chain A, N-Terminal Bromodomain Of Human Brd4 With 1,3-Dimethyl-6-(
Morpholine-4-Sulfonyl)-1,2,3,
4-Tetrahydroquinazolin-2-One
pdb|3UVW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k5ack8ac)
pdb|3UVY|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k16ack20ac)
pdb|3UVX|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k12ack16ac)
pdb|3UW9|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|D Chain D, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|4E96|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With The Inhibitor Pfi-1
pdb|4F3I|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Ms417 Inhibitor
pdb|4GPJ|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Isoxazolylbenzimidazole Ligand
pdb|4HBV|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4HBX|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4HBY|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4J0R|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-dimethylisoxazol Ligand
pdb|4J0S|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-dimethylisoxazol Ligand
Length = 127
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 54/91 (59%)
Query: 111 ILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDV 170
+L+ + +H++AWPF QPVD L L DYY++I PMD TIKK++E Y N +E D
Sbjct: 29 VLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDF 88
Query: 171 RLVFKNAMKYNDERSDVHVMAKTLLAKFEEK 201
+F N YN D+ +MA+ L F +K
Sbjct: 89 NTMFTNCYIYNKPGDDIVLMAEALEKLFLQK 119
>pdb|4HBW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazoline Ligand
Length = 127
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 54/91 (59%)
Query: 111 ILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDV 170
+L+ + +H++AWPF QPVD L L DYY++I PMD TIKK++E Y N +E D
Sbjct: 29 VLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDF 88
Query: 171 RLVFKNAMKYNDERSDVHVMAKTLLAKFEEK 201
+F N YN D+ +MA+ L F +K
Sbjct: 89 NTMFTNCYIYNKPGDDIVLMAEALEKLFLQK 119
>pdb|2WP2|A Chain A, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated
Histone H4 Peptide.
pdb|2WP2|B Chain B, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated
Histone H4 Peptide
Length = 120
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 55/95 (57%)
Query: 111 ILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDV 170
+L+ + +H ++WPF QPVD L L DYY +I PMD +TIKK++E K Y+ E D
Sbjct: 22 VLKALWKHGFSWPFQQPVDAVKLKLPDYYTIIKTPMDLNTIKKRLENKYYEKASECIEDF 81
Query: 171 RLVFKNAMKYNDERSDVHVMAKTLLAKFEEKWLQL 205
+F N YN D+ VMA+ L F +K Q+
Sbjct: 82 NTMFSNCYLYNKTGDDIVVMAQALEKLFMQKLSQM 116
>pdb|2YDW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YDW|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YDW|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YEK|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|2YEK|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|2YEK|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|4AKN|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
pdb|4AKN|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
pdb|4AKN|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
Length = 153
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 55/91 (60%)
Query: 111 ILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDV 170
+++ + +H++AWPF QPVD LGL DY+++I +PMD TIK+++E Y E D
Sbjct: 40 VMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDF 99
Query: 171 RLVFKNAMKYNDERSDVHVMAKTLLAKFEEK 201
+F N YN D+ +MA+TL F +K
Sbjct: 100 NTMFTNCYIYNKPTDDIVLMAQTLEKIFLQK 130
>pdb|4A9E|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9E|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9E|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9F|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9F|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9F|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9H|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9H|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9H|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9I|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9I|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9I|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9J|A Chain A, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9J|B Chain B, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9J|C Chain C, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9M|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9M|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9M|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9O|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4A9O|B Chain B, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4A9O|C Chain C, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4ALH|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALH|B Chain B, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALH|C Chain C, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALG|A Chain A, N-Terminal Bromodomain Of Human Brd2 With Ibet-151
Length = 154
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 55/91 (60%)
Query: 111 ILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDV 170
+++ + +H++AWPF QPVD LGL DY+++I +PMD TIK+++E Y E D
Sbjct: 40 VMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDF 99
Query: 171 RLVFKNAMKYNDERSDVHVMAKTLLAKFEEK 201
+F N YN D+ +MA+TL F +K
Sbjct: 100 NTMFTNCYIYNKPTDDIVLMAQTLEKIFLQK 130
>pdb|2RFJ|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|2RFJ|B Chain B, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|2RFJ|C Chain C, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|4FLP|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brdt
In Complex With The Inhibitor Jq1
pdb|4FLP|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brdt
In Complex With The Inhibitor Jq1
Length = 119
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 55/96 (57%)
Query: 110 TILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTD 169
+L+++ +H ++WPF +PVD L L DYY +I PMD +TIKK++E K Y E D
Sbjct: 20 VVLKDLWKHSFSWPFQRPVDAVKLQLPDYYTIIKNPMDLNTIKKRLENKYYAKASECIED 79
Query: 170 VRLVFKNAMKYNDERSDVHVMAKTLLAKFEEKWLQL 205
+F N YN D+ +MA+ L F +K Q+
Sbjct: 80 FNTMFSNCYLYNKPGDDIVLMAQALEKLFMQKLSQM 115
>pdb|3G0L|A Chain A, Crystal Structure Of Human Bromodomain Adjacent To Zinc
Finger Domain 2b (Baz2b)
pdb|3Q2F|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With A Triazolo Ligand
pdb|4IR3|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
[7-amino-1-(pyrimidin-2-yl)indolizin-3-yl]ethanone
(gsk2833282a)
pdb|4IR4|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
[7-(morpholin-4-yl)-1-(pyridin-2-yl)indolizin-3-
yl]ethanone (gsk2834113a)
pdb|4IR5|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
{1-[2-(hydroxymethyl)phenyl]-7-phenoxyindolizin-3-
yl}ethanone (gsk2847449a)
pdb|4IR6|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
{1-[2-(methylsulfonyl)phenyl]-7-phenoxyindolizin-3-
yl}ethanone (gsk2838097a)
Length = 117
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Query: 111 ILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDV 170
IL + H+ AWPF+ PV++K + Y +VI KPMDFSTI++++ + +Y N+ DV
Sbjct: 21 ILTEMETHEDAWPFLLPVNLKLVP--GYKKVIKKPMDFSTIREKLSSGQYPNLETFALDV 78
Query: 171 RLVFKNAMKYNDERSDVHVMAKTLLAKFEEKW 202
RLVF N +N++ SD+ + FE+KW
Sbjct: 79 RLVFDNCETFNEDDSDIGRAGHNMRKYFEKKW 110
>pdb|2E7O|A Chain A, Solution Structure Of The Bromodomain From Human
Bromodomain Adjacent To Zinc Finger Domain 2b
Length = 112
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Query: 111 ILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDV 170
IL + H+ AWPF+ PV++K + Y +VI KPMDFSTI++++ + +Y N+ DV
Sbjct: 18 ILTEMETHEDAWPFLLPVNLKLV--PGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDV 75
Query: 171 RLVFKNAMKYNDERSDVHVMAKTLLAKFEEKW 202
RLVF N +N++ SD+ + FE+KW
Sbjct: 76 RLVFDNCETFNEDDSDIGRAGHNMRKYFEKKW 107
>pdb|2L5E|A Chain A, Complex Between Bd1 Of Brd3 And Gata-1 C-Tail
Length = 128
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 55/97 (56%)
Query: 109 GTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICT 168
+++ + +H++AWPF QPVD L L DY+++I PMD TIKK++E Y + E
Sbjct: 25 NVVVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASECMQ 84
Query: 169 DVRLVFKNAMKYNDERSDVHVMAKTLLAKFEEKWLQL 205
D +F N YN D+ +MA+ L F +K Q+
Sbjct: 85 DFNTMFTNCYIYNKPTDDIVLMAQALEKIFLQKVAQM 121
>pdb|2NXB|A Chain A, Crystal Structure Of Human Bromodomain Containing Protein
3 (Brd3)
pdb|2NXB|B Chain B, Crystal Structure Of Human Bromodomain Containing Protein
3 (Brd3)
pdb|3S91|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd3
In Complex With The Inhibitor Jq1
Length = 123
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 55/97 (56%)
Query: 109 GTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICT 168
+++ + +H++AWPF QPVD L L DY+++I PMD TIKK++E Y + E
Sbjct: 23 NVVVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASECMQ 82
Query: 169 DVRLVFKNAMKYNDERSDVHVMAKTLLAKFEEKWLQL 205
D +F N YN D+ +MA+ L F +K Q+
Sbjct: 83 DFNTMFTNCYIYNKPTDDIVLMAQALEKIFLQKVAQM 119
>pdb|2YW5|A Chain A, Solution Structure Of The Bromodomain From Human
Bromodomain Containing Protein 3
Length = 138
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 55/97 (56%)
Query: 109 GTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICT 168
+++ + +H++AWPF QPVD L L DY+++I PMD TIKK++E Y + E
Sbjct: 27 NVVVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASECMQ 86
Query: 169 DVRLVFKNAMKYNDERSDVHVMAKTLLAKFEEKWLQL 205
D +F N YN D+ +MA+ L F +K Q+
Sbjct: 87 DFNTMFTNCYIYNKPTDDIVLMAQALEKIFLQKVAQM 123
>pdb|3MB3|A Chain A, Crystal Structure Of The Second Bromodomain Of Pleckstrin
Homology Domain Interacting Protein (Phip)
Length = 135
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 61/96 (63%), Gaps = 3/96 (3%)
Query: 106 RQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVRE 165
+Q +L I Q + + PF QPVD+ L DY ++ID PMDF+T+++ +EA Y++ E
Sbjct: 24 KQCEELLNLIFQCEDSEPFRQPVDL--LEYPDYRDIIDTPMDFATVRETLEAGNYESPME 81
Query: 166 ICTDVRLVFKNAMKYN-DERSDVHVMAKTLLAKFEE 200
+C DVRL+F N+ Y +RS ++ M+ L A FEE
Sbjct: 82 LCKDVRLIFSNSKAYTPSKRSRIYSMSLRLSAFFEE 117
>pdb|3AQA|A Chain A, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
pdb|3AQA|B Chain B, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
pdb|3AQA|C Chain C, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
Length = 128
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 51/91 (56%)
Query: 111 ILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDV 170
+ + + +H++AWPF QPVD LGL DY+++I +P D TIK+++E Y E D
Sbjct: 20 VXKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPXDXGTIKRRLENNYYWAASECXQDF 79
Query: 171 RLVFKNAMKYNDERSDVHVMAKTLLAKFEEK 201
F N YN D+ + A+TL F +K
Sbjct: 80 NTXFTNCYIYNKPTDDIVLXAQTLEKIFLQK 110
>pdb|1X0J|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|1X0J|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|1X0J|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|2DVQ|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVQ|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVQ|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
Length = 122
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 51/91 (56%)
Query: 111 ILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDV 170
+ + + +H++AWPF QPVD LGL DY+++I +P D TIK+++E Y E D
Sbjct: 14 VXKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPXDXGTIKRRLENNYYWAASECXQDF 73
Query: 171 RLVFKNAMKYNDERSDVHVMAKTLLAKFEEK 201
F N YN D+ + A+TL F +K
Sbjct: 74 NTXFTNCYIYNKPTDDIVLXAQTLEKIFLQK 104
>pdb|3Q2E|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Bromodomain And Wd Repeat-Containing Protein 1 Isoform A
(Wdr9)
Length = 123
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Query: 123 PFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYN- 181
PF QPVD+ + DY ++ID PMDF T+++ ++A Y + E C D+RL+F NA Y
Sbjct: 30 PFRQPVDL--VEYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAYTP 87
Query: 182 DERSDVHVMAKTLLAKFEEK 201
++RS ++ M L A FEEK
Sbjct: 88 NKRSKIYSMTLRLSALFEEK 107
>pdb|1E6I|A Chain A, Bromodomain From Gcn5 Complexed With Acetylated H4 Peptide
Length = 121
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 110 TILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTD 169
IL + H AWPF+QPV+ + + DYY+ I +PMD ST++ ++E+ +Y+ + + D
Sbjct: 20 NILTELQNHAAAWPFLQPVNKEEVP--DYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYD 77
Query: 170 VRLVFKNAMKYNDERSDVHVMAKTLLAKFEEK 201
RLVF N YN E + + A L F K
Sbjct: 78 ARLVFNNCRMYNGENTSYYKYANRLEKFFNNK 109
>pdb|1JSP|B Chain B, Nmr Structure Of Cbp Bromodomain In Complex With P53
Peptide
pdb|2D82|A Chain A, Target Structure-Based Discovery Of Small Molecules That
Block Human P53 And Creb Binding Protein (Cbp)
Association
pdb|2RNY|A Chain A, Complex Structures Of Cbp Bromodomain With H4 Ack20
Peptide
pdb|2L84|A Chain A, Solution Nmr Structures Of Cbp Bromodomain With Small
Molecule J28
pdb|2L85|A Chain A, Solution Nmr Structures Of Cbp Bromodomain With Small
Molecule Of Hbs
Length = 121
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%)
Query: 123 PFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYND 182
PF QPVD + LG+ DY++++ PMD STIK++++ +Y+ + DV L+F NA YN
Sbjct: 34 PFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNR 93
Query: 183 ERSDVHVMAKTLLAKFEE 200
+ S V+ L FE+
Sbjct: 94 KTSRVYKFCSKLAEVFEQ 111
>pdb|3DWY|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp
pdb|3DWY|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp
pdb|3P1C|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Acetylated Lysine
pdb|3P1C|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Acetylated Lysine
pdb|3P1D|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With N-Methyl-2-Pyrrolidone (Nmp)
pdb|3P1D|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With N-Methyl-2-Pyrrolidone (Nmp)
pdb|3P1E|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Dimethyl Sulfoxide (Dmso)
pdb|3P1E|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Dimethyl Sulfoxide (Dmso)
pdb|3P1F|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With A Hydroquinazolin Ligand
pdb|3P1F|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With A Hydroquinazolin Ligand
pdb|3SVH|A Chain A, Crystal Structure Of The Bromdomain Of Human Crebbp In
Complex With A 3,5-Dimethylisoxazol Ligand
pdb|3SVH|B Chain B, Crystal Structure Of The Bromdomain Of Human Crebbp In
Complex With A 3,5-Dimethylisoxazol Ligand
pdb|4A9K|A Chain A, Bromodomain Of Human Crebbp With N-(4-Hydroxyphenyl)
Acetamide
pdb|4A9K|B Chain B, Bromodomain Of Human Crebbp With N-(4-Hydroxyphenyl)
Acetamide
Length = 119
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%)
Query: 123 PFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYND 182
PF QPVD + LG+ DY++++ PMD STIK++++ +Y+ + DV L+F NA YN
Sbjct: 32 PFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNR 91
Query: 183 ERSDVHVMAKTLLAKFEE 200
+ S V+ L FE+
Sbjct: 92 KTSRVYKFCSKLAEVFEQ 109
>pdb|3I3J|A Chain A, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|B Chain B, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|C Chain C, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|D Chain D, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|E Chain E, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|F Chain F, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|G Chain G, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|H Chain H, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|I Chain I, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|J Chain J, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|K Chain K, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|L Chain L, Crystal Structure Of The Bromodomain Of Human Ep300
Length = 124
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 48/78 (61%)
Query: 123 PFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYND 182
PF QPVD + LG+ DY++++ PMD STIK++++ +Y+ + D+ L+F NA YN
Sbjct: 37 PFRQPVDPQLLGIPDYFDIVKSPMDLSTIKRKLDTGQYQEPWQYVDDIWLMFNNAWLYNR 96
Query: 183 ERSDVHVMAKTLLAKFEE 200
+ S V+ L FE+
Sbjct: 97 KTSRVYKYCSKLSEVFEQ 114
>pdb|3QZS|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form I
pdb|3QZS|B Chain B, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form I
Length = 115
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 54/91 (59%), Gaps = 2/91 (2%)
Query: 111 ILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDV 170
+LR++ HK AWPF++PVD DYY VI +PMD +T++++++ + Y+ + E D+
Sbjct: 21 VLRSLQAHKMAWPFLEPVDPNDA--PDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADM 78
Query: 171 RLVFKNAMKYNDERSDVHVMAKTLLAKFEEK 201
+F N YN S + A+ L + F +K
Sbjct: 79 TAIFDNCRYYNPSDSPFYQCAEVLESFFVQK 109
>pdb|3UV2|A Chain A, Crystal Structure Of The Bromodomain Of Human
Nucleosome-Remodeling Factor Subunit Bptf
Length = 126
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 54/91 (59%), Gaps = 2/91 (2%)
Query: 111 ILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDV 170
+LR++ HK AWPF++PVD DYY VI +PMD +T++++++ + Y+ + E D+
Sbjct: 28 VLRSLQAHKMAWPFLEPVDPNDAP--DYYGVIKEPMDLATMEERVQRRYYEKLTEFVADM 85
Query: 171 RLVFKNAMKYNDERSDVHVMAKTLLAKFEEK 201
+F N YN S + A+ L + F +K
Sbjct: 86 TKIFDNCRYYNPSDSPFYQCAEVLESFFVQK 116
>pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e
Mutant From Human Bptf In The H3(1-9)k4me2 Bound State
Length = 174
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 54/91 (59%), Gaps = 2/91 (2%)
Query: 111 ILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDV 170
+LR++ HK AWPF++PVD DYY VI +PMD +T++++++ + Y+ + E D+
Sbjct: 80 VLRSLQAHKMAWPFLEPVDPNDA--PDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADM 137
Query: 171 RLVFKNAMKYNDERSDVHVMAKTLLAKFEEK 201
+F N YN S + A+ L + F +K
Sbjct: 138 TKIFDNCRYYNPSDSPFYQCAEVLESFFVQK 168
>pdb|3QZV|A Chain A, Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With
Histone H4k12ac Peptide
Length = 174
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 54/91 (59%), Gaps = 2/91 (2%)
Query: 111 ILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDV 170
+LR++ HK AWPF++PVD DYY VI +PMD +T++++++ + Y+ + E D+
Sbjct: 80 VLRSLQAHKMAWPFLEPVDPNDA--PDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADM 137
Query: 171 RLVFKNAMKYNDERSDVHVMAKTLLAKFEEK 201
+F N YN S + A+ L + F +K
Sbjct: 138 TKIFDNCRYYNPSDSPFYQCAEVLESFFVQK 168
>pdb|3QZT|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form Ii
Length = 115
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 54/91 (59%), Gaps = 2/91 (2%)
Query: 111 ILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDV 170
+LR++ HK AWPF++PVD DYY VI +PMD +T++++++ + Y+ + E D+
Sbjct: 21 VLRSLQAHKMAWPFLEPVDPNDA--PDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADM 78
Query: 171 RLVFKNAMKYNDERSDVHVMAKTLLAKFEEK 201
+F N YN S + A+ L + F +K
Sbjct: 79 TKIFDNCRYYNPSDSPFYQCAEVLESFFVQK 109
>pdb|2F6J|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6N|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2F6N|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2FSA|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
Length = 174
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 111 ILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDV 170
+LR++ HK AWPF++PVD DYY VI +P D +T +++++ + Y+ + E D
Sbjct: 80 VLRSLQAHKXAWPFLEPVDPNDA--PDYYGVIKEPXDLATXEERVQRRYYEKLTEFVADX 137
Query: 171 RLVFKNAMKYNDERSDVHVMAKTLLAKFEEK 201
+F N YN S + A+ L + F +K
Sbjct: 138 TKIFDNCRYYNPSDSPFYQCAEVLESFFVQK 168
>pdb|3NXB|A Chain A, Crystal Structure Of The Bromodomain Of Human Cecr2
pdb|3NXB|B Chain B, Crystal Structure Of The Bromodomain Of Human Cecr2
Length = 116
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 111 ILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDV 170
+L + HK +WPF++PVD +YY++I PMD S+++K++ Y E D+
Sbjct: 24 VLDVVKAHKDSWPFLEPVDESYAP--NYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDM 81
Query: 171 RLVFKNAMKYNDERSDVHVMAKTL 194
+ +F+N KYN E S+ M+ L
Sbjct: 82 KTMFRNCRKYNGESSEYTKMSDNL 105
>pdb|3UV5|A Chain A, Crystal Structure Of The Tandem Bromodomains Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
Length = 265
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 56/111 (50%), Gaps = 16/111 (14%)
Query: 108 FGTILRNITQHKW-----AWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKN 162
F IL NI K +WPF PV+ K + DYY+VI PMD TI+K + +Y++
Sbjct: 137 FSFILDNIVTQKMMAVPDSWPFHHPVNKKFVP--DYYKVIVNPMDLETIRKNISKHKYQS 194
Query: 163 VREICTDVRLVFKNAMKYNDERSD--------VHVMAKTLLAKFEEKWLQL 205
DV L+ N++KYN S V+V +T L +++E QL
Sbjct: 195 RESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQT-LTEYDEHLTQL 244
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 121 AWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKY 180
+PF PV+ K + DYY++I +PMD T+++ + + Y + E + L+ KN+ Y
Sbjct: 32 TYPFHTPVNAKVVK--DYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATY 89
Query: 181 NDERSDVHVMAKTLLAKFEEK 201
N + + +++++L +EK
Sbjct: 90 NGPKHSLTQISQSMLDLCDEK 110
>pdb|1EQF|A Chain A, Crystal Structure Of The Double Bromodomain Module From
Human Tafii250
Length = 280
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 56/111 (50%), Gaps = 16/111 (14%)
Query: 108 FGTILRNITQHKW-----AWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKN 162
F IL NI K +WPF PV+ K + DYY+VI PMD TI+K + +Y++
Sbjct: 149 FSFILDNIVTQKMMAVPDSWPFHHPVNKKFVP--DYYKVIVNPMDLETIRKNISKHKYQS 206
Query: 163 VREICTDVRLVFKNAMKYNDERSD--------VHVMAKTLLAKFEEKWLQL 205
DV L+ N++KYN S V+V +T L +++E QL
Sbjct: 207 RESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQT-LTEYDEHLTQL 256
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 121 AWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKY 180
+PF PV+ K + DYY++I +PMD T+++ + + Y + E + L+ KN+ Y
Sbjct: 44 TYPFHTPVNAKVVK--DYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATY 101
Query: 181 NDERSDVHVMAKTLLAKFEEK 201
N + + +++++L +EK
Sbjct: 102 NGPKHSLTQISQSMLDLCDEK 122
>pdb|3AAD|A Chain A, Structure Of The Histone Chaperone Cia/asf1-double
Bromodomain Complex Linking Histone Modifications And
Site-specific Histone Eviction
Length = 292
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 56/111 (50%), Gaps = 16/111 (14%)
Query: 108 FGTILRNITQHKW-----AWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKN 162
F IL NI K +WPF PV+ K + DYY+VI PMD TI+K + +Y++
Sbjct: 170 FSFILDNIVTQKMMAVPDSWPFHHPVNKKFVP--DYYKVIVNPMDLETIRKNISKHKYQS 227
Query: 163 VREICTDVRLVFKNAMKYNDERSD--------VHVMAKTLLAKFEEKWLQL 205
DV L+ N++KYN S V+V +T L +++E QL
Sbjct: 228 RESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQT-LTEYDEHLTQL 277
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 121 AWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKY 180
+PF PV+ K + DYY++I +PMD T+++ + + Y + E + L+ KN+ Y
Sbjct: 65 TYPFHTPVNAKVVK--DYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATY 122
Query: 181 NDERSDVHVMAKTLLAKFEEK 201
N + + +++++L +EK
Sbjct: 123 NGPKHSLTQISQSMLDLCDEK 143
>pdb|3GG3|A Chain A, Crystal Structure Of The Bromodomain Of Human Pcaf
pdb|3GG3|B Chain B, Crystal Structure Of The Bromodomain Of Human Pcaf
Length = 119
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 104 LIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNV 163
L +IL+ + H+ AWPFM+PV K YYEVI PMD T+ ++++ + Y +
Sbjct: 16 LYSTLKSILQQVKSHQSAWPFMEPV--KRTEAPGYYEVIRFPMDLKTMSERLKNRYYVSK 73
Query: 164 REICTDVRLVFKNAMKYNDERSDVHVMAKTLLAKF 198
+ D++ VF N +YN S+ + A +L KF
Sbjct: 74 KLFMADLQRVFTNCKEYNPPESEYYKCA-NILEKF 107
>pdb|1N72|A Chain A, Structure And Ligand Of A Histone Acetyltransferase
Bromodomain
pdb|1JM4|B Chain B, Nmr Structure Of PCAF BROMODOMAIN IN COMPLEX WITH HIV-1
Tat Peptide
pdb|1WUG|A Chain A, Complex Structure Of Pcaf Bromodomain With Small Chemical
Ligand Np1
pdb|1WUM|A Chain A, Complex Structure Of Pcaf Bromodomain With Small Chemical
Ligand Np2
pdb|1ZS5|A Chain A, Structure-Based Evaluation Of Selective And Non-Selective
Small Molecules That Block Hiv-1 Tat And Pcaf
Association
pdb|2RNW|A Chain A, The Structural Basis For Site-Specific Lysine-Acetylated
Histone Recognition By The Bromodomains Of The Human
Transcriptional Co-Activators Pcaf And Cbp
pdb|2RNX|A Chain A, The Structural Basis For Site-Specific Lysine-Acetylated
Histone Recognition By The Bromodomains Of The Human
Transcriptional Co-Activators Pcaf And Cbp
Length = 118
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 104 LIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNV 163
L +IL+ + H+ AWPFM+PV K YYEVI PMD T+ ++++ + Y +
Sbjct: 14 LYSTLKSILQQVKSHQSAWPFMEPV--KRTEAPGYYEVIRFPMDLKTMSERLKNRYYVSK 71
Query: 164 REICTDVRLVFKNAMKYNDERSDVHVMAKTLLAKF 198
+ D++ VF N +YN S+ + A +L KF
Sbjct: 72 KLFMADLQRVFTNCKEYNPPESEYYKCA-NILEKF 105
>pdb|3UV4|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
pdb|3UV4|B Chain B, Crystal Structure Of The Second Bromodomain Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
Length = 158
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 56/111 (50%), Gaps = 16/111 (14%)
Query: 108 FGTILRNITQHKW-----AWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKN 162
F IL NI K +WPF PV+ K + DYY+VI PMD TI+K + +Y++
Sbjct: 30 FSFILDNIVTQKMMAVPDSWPFHHPVNKKFVP--DYYKVIVNPMDLETIRKNISKHKYQS 87
Query: 163 VREICTDVRLVFKNAMKYNDERSD--------VHVMAKTLLAKFEEKWLQL 205
DV L+ N++KYN S V+V +T L +++E QL
Sbjct: 88 RESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQT-LTEYDEHLTQL 137
>pdb|3RCW|A Chain A, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|B Chain B, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|C Chain C, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|D Chain D, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|E Chain E, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|F Chain F, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|G Chain G, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|H Chain H, Crystal Structure Of The Bromodomain Of Human Brd1
Length = 135
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 110 TILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTD 169
++L + A F QPV +K + DY + I PMDF+T++K++EA+ YKN+ E D
Sbjct: 20 SVLDQLQDKDPARIFAQPVSLKEVP--DYLDHIKHPMDFATMRKRLEAQGYKNLHEFEED 77
Query: 170 VRLVFKNAMKYN 181
L+ N MKYN
Sbjct: 78 FDLIIDNCMKYN 89
>pdb|3HMH|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Tbp-Associated Factor Rna Polymerase 1-Like (Taf1l)
Length = 155
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 108 FGTILRNITQHKW-----AWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKN 162
F IL NI K +WPF PV+ K + DYY++I P+D TI+K + +Y++
Sbjct: 27 FSFILDNIVTQKMMAVPDSWPFHHPVNKKFVP--DYYKMIVNPVDLETIRKNISKHKYQS 84
Query: 163 VREICTDVRLVFKNAMKYNDERS 185
DV L+ N++KYN S
Sbjct: 85 RESFLDDVNLILANSVKYNGPES 107
>pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|B Chain B, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|C Chain C, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|D Chain D, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|E Chain E, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|F Chain F, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|G Chain G, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|H Chain H, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|I Chain I, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|J Chain J, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|K Chain K, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|L Chain L, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5N|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5N|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5O|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5P|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
Length = 207
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 106 RQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAK---EYKN 162
R+ +L + H+ + F +PV + +YY++I KPMD ST+KK+++ K Y+
Sbjct: 84 RKCERLLLYLYCHELSIEFQEPVPA---SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQI 140
Query: 163 VREICTDVRLVFKNAMKYNDERSDVHVMAKT 193
+ DVRL+FKN ++N+ V V A T
Sbjct: 141 PDDFVADVRLIFKNCERFNEMMKVVQVYADT 171
>pdb|2YYN|A Chain A, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|B Chain B, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|C Chain C, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|D Chain D, Crystal Sturcture Of Human Bromodomain Protein
Length = 135
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 106 RQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQME--AKEYKNV 163
R+ +L + H+ + F PV L + DYY++I PMD STIKK+++ Y
Sbjct: 23 RKCERLLLFLYCHEMSLAFQDPVP---LTVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKP 79
Query: 164 REICTDVRLVFKNAMKYNDERSDVHVMAKTLLAKFEEKWLQLLP 207
+ D RL+F+N ++N+ S+V L FEE L P
Sbjct: 80 EDFVADFRLIFQNCAEFNEPDSEVANAGIKLENYFEELLKNLYP 123
>pdb|3D7C|A Chain A, Crystal Structure Of The Bromodomain Of Human Gcn5, The
General Control Of Amino-Acid Synthesis Protein 5-Like 2
pdb|3D7C|B Chain B, Crystal Structure Of The Bromodomain Of Human Gcn5, The
General Control Of Amino-Acid Synthesis Protein 5-Like 2
Length = 112
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 107 QFGTILRN----ITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKN 162
Q T L+N I H AWPFM+PV K DYYEVI P+D T+ +++ ++ Y
Sbjct: 7 QLYTTLKNLLAQIKSHPSAWPFMEPV--KKSEAPDYYEVIRFPIDLKTMTERLRSRYYVT 64
Query: 163 VREICTDVRLVFKNAMKYNDERSDVHVMAKTLLAKF 198
+ D++ V N +YN S+ + + L KF
Sbjct: 65 RKLFVADLQRVIANCREYNPPDSE-YCRCASALEKF 99
>pdb|1F68|A Chain A, Nmr Solution Structure Of The Bromodomain From Human Gcn5
Length = 103
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 107 QFGTILRN----ITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKN 162
Q T L+N I H AWPFM+PV K DYYEVI P+D T+ +++ ++ Y
Sbjct: 3 QLYTTLKNLLAQIKSHPSAWPFMEPV--KKSEAPDYYEVIRFPIDLKTMTERLRSRYYVT 60
Query: 163 VREICTDVRLVFKNAMKYNDERSDVHVMAKTL 194
+ D++ V N +YN S+ A L
Sbjct: 61 RKLFVADLQRVIANCREYNPPDSEYCRCASAL 92
>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|B Chain B, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|C Chain C, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|D Chain D, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O34|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(13-32)k23ac Peptide
pdb|3O35|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O35|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O36|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O36|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O37|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|C Chain C, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|D Chain D, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
Length = 184
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 106 RQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQME--AKEYKNV 163
R+ +L + H+ + F PV L + DYY++I PMD STIKK+++ Y
Sbjct: 84 RKCERLLLFLYCHEMSLAFQDPV---PLTVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKP 140
Query: 164 REICTDVRLVFKNAMKYNDERSDVHVMAKTLLAKFEEKWLQLLP 207
+ D RL+F+N ++N+ S+V L FEE L P
Sbjct: 141 EDFVADFRLIFQNCAEFNEPDSEVANAGIKLENYFEELLKNLYP 184
>pdb|2R0V|A Chain A, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
pdb|2R0V|B Chain B, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
pdb|2R0V|C Chain C, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
Length = 346
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 119 KWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAM 178
K + PFM+ VD L +YYE++ PM S +K+ +E +Y + + D+ LVF+NA
Sbjct: 214 KLSEPFMELVDKDELP--EYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAH 271
Query: 179 KYNDERSDVHVMAKTLLAKF 198
+ND + ++ A TL F
Sbjct: 272 IFNDPSALIYKDATTLTNYF 291
>pdb|2R10|A Chain A, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone
Chimera
pdb|2R10|B Chain B, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone
Chimera
Length = 361
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 119 KWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAM 178
K + PFM+ VD L +YYE++ PM S +K+ +E +Y + + D+ LVF+NA
Sbjct: 229 KLSEPFMELVDKDELP--EYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAH 286
Query: 179 KYNDERSDVHVMAKTLLAKF 198
+ND + ++ A TL F
Sbjct: 287 IFNDPSALIYKDATTLTNYF 306
>pdb|3FKM|X Chain X, Plasmodium Falciparum Bromodomain-Containing Protein
Pf10_0328
Length = 166
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%)
Query: 111 ILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDV 170
++ ++++++ F + VD K DYY+VI P FS IK +++ +Y E DV
Sbjct: 29 LILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPXSFSCIKTKLKKGQYAYPSEFVKDV 88
Query: 171 RLVFKNAMKYNDERSDVHVMAKTLLAKF 198
+L+F N YN S V + K + F
Sbjct: 89 QLIFDNCSLYNTSNSVVAITGKNIETYF 116
>pdb|3LXJ|A Chain A, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|B Chain B, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|C Chain C, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|D Chain D, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
Length = 136
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 6/84 (7%)
Query: 105 IRQFGTILRNITQH----KWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEY 160
+R+ LR++T+ K F +PVD++ + DY EVI +PMD ST+ +++ Y
Sbjct: 10 LRELRLFLRDVTKRLATDKRFNIFSKPVDIEEVS--DYLEVIKEPMDLSTVITKIDKHNY 67
Query: 161 KNVREICTDVRLVFKNAMKYNDER 184
++ D+ L+ NA++YN ++
Sbjct: 68 LTAKDFLKDIDLICSNALEYNPDK 91
>pdb|3DAI|A Chain A, Crystal Structure Of The Bromodomain Of The Human Atad2
Length = 130
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 8/85 (9%)
Query: 105 IRQFGTILRNITQHKWAWP-----FMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKE 159
R+ LRN+T H+ A F +PVD + DY VI +PMD S++ +++ +
Sbjct: 8 FRELRIFLRNVT-HRLAIDKRFRVFTKPVDPDEVP--DYVTVIKQPMDLSSVISKIDLHK 64
Query: 160 YKNVREICTDVRLVFKNAMKYNDER 184
Y V++ D+ L+ NA++YN +R
Sbjct: 65 YLTVKDYLRDIDLICSNALEYNPDR 89
>pdb|3HME|A Chain A, Crystal Structure Of Human Bromodomain Containing 9
Isoform 1 (Brd9)
pdb|3HME|B Chain B, Crystal Structure Of Human Bromodomain Containing 9
Isoform 1 (Brd9)
Length = 123
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%)
Query: 138 YYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVHVMAKTLL 195
Y +I PMDF T+K ++ A EYK+V E D +L+ NAM YN + + +AK +L
Sbjct: 46 YSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNRPDTVYYKLAKKIL 103
>pdb|3TLP|A Chain A, Crystal Structure Of The Fourth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3TLP|B Chain B, Crystal Structure Of The Fourth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 150
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%)
Query: 137 DYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVHVMAKTLLA 196
DYY++I +PMD I+ + +Y + D++L+F+NA YN+E S V+ A L
Sbjct: 63 DYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARHYNEEGSQVYNDAHILEK 122
Query: 197 KFEEKWLQLLP 207
+EK +L P
Sbjct: 123 LLKEKRKELGP 133
>pdb|2R0S|A Chain A, Crystal Structure Of The Rsc4 Tandem Bromodomain
Length = 285
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 119 KWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAM 178
K + PF + VD L +YYE++ P S +K+ +E +Y + + D LVF+NA
Sbjct: 173 KLSEPFXELVDKDELP--EYYEIVHSPXALSIVKQNLEIGQYSKIYDFIIDXLLVFQNAH 230
Query: 179 KYNDERSDVHVMAKTLLAKF 198
+ND + ++ A TL F
Sbjct: 231 IFNDPSALIYKDATTLTNYF 250
>pdb|2R0Y|A Chain A, Structure Of The Rsc4 Tandem Bromodomain In Complex With
An Acetylated H3 Peptide
Length = 311
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 119 KWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAM 178
K + PF + VD L +YYE++ P S +K+ +E +Y + + D LVF+NA
Sbjct: 179 KLSEPFXELVDKDELP--EYYEIVHSPXALSIVKQNLEIGQYSKIYDFIIDXLLVFQNAH 236
Query: 179 KYNDERSDVHVMAKTLLAKF 198
+ND + ++ A TL F
Sbjct: 237 IFNDPSALIYKDATTLTNYF 256
>pdb|2KTB|B Chain B, Solution Structure Of The Second Bromodomain Of Human
Polybr Complex With An Acetylated Peptide From Histone 3
Length = 121
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 137 DYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDV 187
DYY +I +P+D TI ++++ YK++ + D+ L+ KNA YN+ S V
Sbjct: 47 DYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQV 97
>pdb|3LJW|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Polybromo
pdb|3LJW|B Chain B, Crystal Structure Of The Second Bromodomain Of Human
Polybromo
Length = 120
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 137 DYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDV 187
DYY +I +P+D TI ++++ YK++ + D+ L+ KNA YN+ S V
Sbjct: 46 DYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQV 96
>pdb|3HMF|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 116
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 137 DYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDV 187
DYY +I +P+D TI ++++ YK++ + D+ L+ KNA YN+ S V
Sbjct: 44 DYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQV 94
>pdb|3G0J|A Chain A, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3G0J|B Chain B, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3MB4|A Chain A, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1) With Nmp
pdb|3MB4|B Chain B, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1) With Nmp
Length = 124
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 135 LDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERS----DVHVM 190
L DYY I KPMD I+ M A +Y+++ + D ++F NA YN+ S D V+
Sbjct: 51 LPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEPESLIYKDALVL 110
Query: 191 AKTLL 195
K LL
Sbjct: 111 HKVLL 115
>pdb|2YQD|A Chain A, Solution Structure Of The Fifth Bromodomain From Mouse
Polybromo-1
Length = 120
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 135 LDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERS----DVHVM 190
L DYY I KPMD I+ M A +Y+++ + D ++F NA YN+ S D V+
Sbjct: 51 LPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEPESLIYKDALVL 110
Query: 191 AKTLL 195
K LL
Sbjct: 111 HKVLL 115
>pdb|2DKW|A Chain A, Solution Structure Of The Bromodomain Of Human Protein
Kiaa1240
Length = 131
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 11/84 (13%)
Query: 105 IRQFGTILRNITQH----KWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEY 160
+R+ LR++T+ K F +PV DY EVI +PMD ST+ +++ Y
Sbjct: 10 LRELRLFLRDVTKRLATDKRFNIFSKPVS-------DYLEVIKEPMDLSTVITKIDKHNY 62
Query: 161 KNVREICTDVRLVFKNAMKYNDER 184
++ D+ L+ NA++YN ++
Sbjct: 63 LTAKDFLKDIDLICSNALEYNPDK 86
>pdb|2D9E|A Chain A, Solution Structure Of The Bromodomain Of Peregrin
pdb|2RS9|B Chain B, Solution Structure Of The Bromodomain Of Human Brpf1 In
Complex With Histone H4k5ac Peptide
Length = 121
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 124 FMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYN 181
F +PV + + DY + I KPMDF T+K+ +EA Y N + D L+ N +KYN
Sbjct: 28 FSEPVPLSEV--PDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYN 83
>pdb|2I7K|A Chain A, Solution Structure Of The Bromodomain Of Human Brd7
Protein
Length = 117
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 37/58 (63%)
Query: 138 YYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVHVMAKTLL 195
Y +I PMDFST+K++++ +Y+++ E+ + +L+ NAM YN + + AK LL
Sbjct: 41 YSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNKPETIYYKAAKKLL 98
>pdb|2DAT|A Chain A, Solution Structure Of The Bromodomain Of Human SwiSNF
Related Matrix Associated Actin Dependent Regulator Of
Cromatin Subfamily A Member 2
Length = 123
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 36/54 (66%)
Query: 135 LDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVH 188
L +YYE+I KP+DF IK+++ +Y+++ ++ DV L+ NA +N E S ++
Sbjct: 49 LPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIY 102
>pdb|3MQM|A Chain A, Crystal Structure Of The Bromodomain Of Human Ash1l
pdb|3MQM|B Chain B, Crystal Structure Of The Bromodomain Of Human Ash1l
Length = 126
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 29/51 (56%)
Query: 137 DYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDV 187
DYYE I P+D TI+KQ+ YK V D+ VF+NA KY +S V
Sbjct: 47 DYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRNAEKYYGRKSPV 97
>pdb|2GRC|A Chain A, 1.5 A Structure Of Bromodomain From Human Brg1 Protein, A
Central Atpase Of SwiSNF REMODELING COMPLEX
Length = 129
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 37/54 (68%)
Query: 135 LDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVH 188
L +YYE+I KP+DF IK+++ +Y+++ ++ DV L+ +NA +N E S ++
Sbjct: 48 LPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIY 101
>pdb|3UVD|A Chain A, Crystal Structure Of The Bromodomain Of Human
Transcription Activator Brg1 (Smarca4) In Complex With
N-Methyl-2-Pyrrolidone
Length = 124
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 37/54 (68%)
Query: 135 LDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVH 188
L +YYE+I KP+DF IK+++ +Y+++ ++ DV L+ +NA +N E S ++
Sbjct: 49 LPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIY 102
>pdb|2H60|A Chain A, Solution Structure Of Human Brg1 Bromodomain
Length = 128
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 37/54 (68%)
Query: 135 LDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVH 188
L +YYE+I KP+DF IK+++ +Y+++ ++ DV L+ +NA +N E S ++
Sbjct: 44 LPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIY 97
>pdb|3IU5|A Chain A, Crystal Structure Of The First Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 116
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 137 DYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKY 180
DYYEV+ +P+D I+++++ +EY +V + D +L+F NA Y
Sbjct: 43 DYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNAKSY 86
>pdb|3K2J|A Chain A, Crystal Structure Of The 3rd Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3K2J|B Chain B, Crystal Structure Of The 3rd Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 130
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 32/52 (61%)
Query: 137 DYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVH 188
DYY+ I P+ I+ +++ +EY+ + + D+ L+F+NA +YN S ++
Sbjct: 55 DYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKRYNVPNSAIY 106
>pdb|2JNS|A Chain A, Solution Structure Of The Bromodomain-Containing Protein 4
Et Domain
Length = 90
Score = 32.0 bits (71), Expect = 0.52, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 263 KCRKTSTEEKRKLGAALTRLSPEDLGKALEIVAQSNTGFQ-ATAEEVELDMD 313
KC+ S EEKR+L + +L E LG+ + I+ + + +E+E+D +
Sbjct: 14 KCKPMSYEEKRQLSLDINKLPGEKLGRVVHIIQSREPSLKNSNPDEIEIDFE 65
>pdb|3M5W|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Campylobacter Jejuni
pdb|3M5W|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Campylobacter Jejuni
pdb|3TZL|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Campylobacter Jejuni Complexed With Adp And Tryptophane
pdb|3TZL|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Campylobacter Jejuni Complexed With Adp And Tryptophane
Length = 322
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 234 AHAKMARDTSNELYEVDVHLDELREMLVQKCRKTSTEEKRKL 275
A+ K AR+ NEL E HL E+ + K RK + E+ +K+
Sbjct: 275 AYFKEAREKYNELLEKPSHLKEILDFGATKARKIAQEKXQKI 316
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,697,397
Number of Sequences: 62578
Number of extensions: 264106
Number of successful extensions: 981
Number of sequences better than 100.0: 79
Number of HSP's better than 100.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 882
Number of HSP's gapped (non-prelim): 82
length of query: 325
length of database: 14,973,337
effective HSP length: 99
effective length of query: 226
effective length of database: 8,778,115
effective search space: 1983853990
effective search space used: 1983853990
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)