Query 020512
Match_columns 325
No_of_seqs 340 out of 1459
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 02:59:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020512.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020512hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1474 Transcription initiati 100.0 3.5E-34 7.5E-39 295.4 8.1 221 96-316 215-498 (640)
2 cd05496 Bromo_WDR9_II Bromodom 100.0 2.9E-30 6.2E-35 212.9 10.9 106 103-210 5-111 (119)
3 cd05495 Bromo_cbp_like Bromodo 100.0 1.3E-29 2.9E-34 205.9 12.3 105 102-206 2-107 (108)
4 cd05497 Bromo_Brdt_I_like Brom 100.0 1.8E-29 3.8E-34 204.8 11.9 99 106-204 8-106 (107)
5 cd05505 Bromo_WSTF_like Bromod 100.0 3.1E-29 6.7E-34 199.9 10.4 95 105-201 2-96 (97)
6 cd05503 Bromo_BAZ2A_B_like Bro 100.0 1.3E-28 2.8E-33 196.5 10.4 96 105-202 2-97 (97)
7 cd05506 Bromo_plant1 Bromodoma 100.0 1.7E-28 3.6E-33 196.4 10.5 99 104-202 1-99 (99)
8 cd05507 Bromo_brd8_like Bromod 100.0 3.6E-28 7.7E-33 196.3 11.7 100 103-204 3-102 (104)
9 cd05504 Bromo_Acf1_like Bromod 100.0 3.7E-28 7.9E-33 199.6 11.4 102 102-205 11-112 (115)
10 cd05502 Bromo_tif1_like Bromod 100.0 8E-28 1.7E-32 195.9 12.6 103 103-208 4-109 (109)
11 cd05508 Bromo_RACK7 Bromodomai 99.9 7.6E-28 1.6E-32 192.5 10.9 96 103-201 3-98 (99)
12 cd05510 Bromo_SPT7_like Bromod 99.9 1.3E-27 2.7E-32 195.3 11.8 102 102-205 6-109 (112)
13 cd05498 Bromo_Brdt_II_like Bro 99.9 1.1E-27 2.3E-32 192.8 10.7 98 105-202 2-102 (102)
14 cd05501 Bromo_SP100C_like Brom 99.9 1.7E-27 3.8E-32 190.6 11.7 98 105-207 4-101 (102)
15 cd05499 Bromo_BDF1_2_II Bromod 99.9 1.2E-27 2.7E-32 192.5 10.6 98 105-202 2-102 (102)
16 cd05509 Bromo_gcn5_like Bromod 99.9 1.6E-27 3.5E-32 191.4 11.2 99 104-204 2-100 (101)
17 cd05500 Bromo_BDF1_2_I Bromodo 99.9 2.5E-27 5.4E-32 191.1 11.4 99 103-201 4-102 (103)
18 cd05528 Bromo_AAA Bromodomain; 99.9 4.2E-27 9E-32 192.3 11.6 104 103-208 3-110 (112)
19 cd05516 Bromo_SNF2L2 Bromodoma 99.9 3E-27 6.5E-32 191.9 10.2 99 104-204 2-106 (107)
20 cd05513 Bromo_brd7_like Bromod 99.9 8.4E-27 1.8E-31 186.1 10.6 92 104-197 2-93 (98)
21 cd05512 Bromo_brd1_like Bromod 99.9 2.2E-26 4.7E-31 183.9 10.4 90 106-197 4-93 (98)
22 cd05511 Bromo_TFIID Bromodomai 99.9 2.3E-26 5E-31 188.1 10.1 99 107-207 4-102 (112)
23 cd05519 Bromo_SNF2 Bromodomain 99.9 4.3E-26 9.4E-31 183.9 9.7 96 105-202 2-103 (103)
24 cd05524 Bromo_polybromo_I Brom 99.9 1.1E-25 2.5E-30 184.3 10.5 102 104-207 3-110 (113)
25 cd05515 Bromo_polybromo_V Brom 99.9 1.6E-25 3.4E-30 181.2 9.8 96 106-203 3-104 (105)
26 cd05518 Bromo_polybromo_IV Bro 99.9 3E-25 6.6E-30 178.8 9.7 100 99-201 3-102 (103)
27 cd05525 Bromo_ASH1 Bromodomain 99.9 5E-25 1.1E-29 178.4 10.5 96 104-201 3-104 (106)
28 cd05520 Bromo_polybromo_III Br 99.9 3.4E-25 7.4E-30 178.5 9.0 83 117-201 20-102 (103)
29 cd05529 Bromo_WDR9_I_like Brom 99.9 1.2E-24 2.6E-29 182.0 12.1 99 103-203 24-126 (128)
30 cd05517 Bromo_polybromo_II Bro 99.9 5.2E-25 1.1E-29 177.5 9.2 93 106-200 3-101 (103)
31 smart00297 BROMO bromo domain. 99.9 1.5E-24 3.2E-29 175.1 11.8 101 102-204 6-106 (107)
32 cd05522 Bromo_Rsc1_2_II Bromod 99.9 2.1E-23 4.5E-28 168.5 10.5 82 118-201 22-103 (104)
33 cd05521 Bromo_Rsc1_2_I Bromodo 99.9 2.8E-23 6E-28 168.2 10.5 96 104-203 2-103 (106)
34 PF00439 Bromodomain: Bromodom 99.9 3.3E-23 7.2E-28 160.0 8.8 84 108-193 1-84 (84)
35 cd04369 Bromodomain Bromodomai 99.9 6.4E-23 1.4E-27 161.3 9.4 95 106-202 3-99 (99)
36 cd05492 Bromo_ZMYND11 Bromodom 99.9 2.9E-22 6.4E-27 162.5 11.4 98 108-205 5-106 (109)
37 cd05526 Bromo_polybromo_VI Bro 99.8 1.1E-19 2.5E-24 147.2 10.0 98 104-205 4-107 (110)
38 KOG1245 Chromatin remodeling c 99.8 2.5E-19 5.4E-24 196.3 7.8 97 108-207 1306-1402(1404)
39 COG5076 Transcription factor i 99.8 9.4E-19 2E-23 170.8 9.5 90 119-210 164-253 (371)
40 KOG1472 Histone acetyltransfer 99.7 4.7E-17 1E-21 166.7 7.1 142 64-207 563-708 (720)
41 cd05494 Bromodomain_1 Bromodom 99.4 6.5E-14 1.4E-18 114.9 4.1 79 104-182 4-89 (114)
42 cd05491 Bromo_TBP7_like Bromod 99.2 1.7E-11 3.6E-16 100.1 4.0 43 142-184 61-103 (119)
43 KOG0955 PHD finger protein BR1 99.2 4.1E-11 8.8E-16 128.1 7.1 100 105-206 567-666 (1051)
44 KOG0386 Chromatin remodeling c 99.1 1.5E-10 3.3E-15 121.3 7.0 100 106-207 1027-1132(1157)
45 KOG0008 Transcription initiati 99.1 1.4E-10 3.1E-15 124.0 5.9 96 107-204 1386-1481(1563)
46 KOG1827 Chromatin remodeling c 98.9 1.5E-09 3.2E-14 110.5 7.3 96 105-202 54-155 (629)
47 KOG1472 Histone acetyltransfer 98.9 1.2E-09 2.6E-14 112.8 4.6 80 117-198 300-379 (720)
48 KOG0008 Transcription initiati 98.9 2.5E-09 5.4E-14 114.7 7.1 99 104-204 1262-1360(1563)
49 KOG1474 Transcription initiati 98.7 2.8E-09 6E-14 111.0 0.9 92 114-205 3-94 (640)
50 KOG1828 IRF-2-binding protein 98.3 1E-07 2.2E-12 91.4 -0.2 89 109-199 25-113 (418)
51 KOG1828 IRF-2-binding protein 98.2 6.1E-07 1.3E-11 86.2 3.1 82 112-196 217-298 (418)
52 COG5076 Transcription factor i 97.5 2.1E-05 4.6E-10 77.0 0.3 92 111-204 271-362 (371)
53 cd05493 Bromo_ALL-1 Bromodomai 97.2 0.00043 9.2E-09 57.9 4.6 68 145-212 59-126 (131)
54 KOG0644 Uncharacterized conser 91.9 0.1 2.2E-06 55.3 2.4 60 142-201 1050-1109(1113)
55 KOG0732 AAA+-type ATPase conta 89.9 0.2 4.4E-06 54.9 2.5 65 120-184 532-601 (1080)
56 KOG0644 Uncharacterized conser 78.0 1.1 2.3E-05 48.0 1.3 69 124-195 86-184 (1113)
57 KOG1827 Chromatin remodeling c 73.7 0.47 1E-05 49.4 -2.6 76 121-198 213-288 (629)
58 PF14372 DUF4413: Domain of un 62.3 27 0.00058 27.7 5.9 48 158-205 4-51 (101)
59 PHA01750 hypothetical protein 61.5 14 0.00031 27.2 3.8 29 24-52 42-70 (75)
60 TIGR02606 antidote_CC2985 puta 54.5 19 0.00042 26.6 3.6 27 149-175 12-38 (69)
61 PF11116 DUF2624: Protein of u 42.3 61 0.0013 25.2 4.7 42 261-302 9-51 (85)
62 PF03693 RHH_2: Uncharacterise 38.1 43 0.00094 25.5 3.4 26 149-174 15-40 (80)
63 PF04508 Pox_A_type_inc: Viral 36.3 47 0.001 19.4 2.5 18 25-42 2-19 (23)
64 PF08776 VASP_tetra: VASP tetr 27.9 1.5E+02 0.0032 19.7 4.1 28 23-50 2-30 (40)
65 PF10046 BLOC1_2: Biogenesis o 25.3 1.4E+02 0.0029 23.6 4.4 32 24-55 59-90 (99)
66 PF11853 DUF3373: Protein of u 24.0 48 0.001 33.9 1.9 28 25-52 32-59 (489)
67 PF10393 Matrilin_ccoil: Trime 24.0 1.4E+02 0.003 20.6 3.6 24 24-47 23-46 (47)
68 PRK10697 DNA-binding transcrip 24.0 1E+02 0.0022 25.4 3.5 29 28-56 78-106 (118)
69 PRK14145 heat shock protein Gr 23.2 5.5E+02 0.012 23.0 8.4 46 4-49 25-70 (196)
70 smart00657 RPOL4c DNA-directed 23.0 1.5E+02 0.0033 24.1 4.4 37 263-299 79-116 (118)
71 TIGR02978 phageshock_pspC phag 22.8 1.1E+02 0.0023 25.4 3.5 28 29-56 82-109 (121)
72 PF03874 RNA_pol_Rpb4: RNA pol 22.5 82 0.0018 25.2 2.7 34 264-297 82-116 (117)
73 PF11458 Mistic: Membrane-inte 22.4 92 0.002 23.6 2.6 30 266-296 2-31 (84)
74 PF10845 DUF2576: Protein of u 21.5 1.2E+02 0.0026 20.7 2.8 22 25-46 12-33 (48)
75 PRK14981 DNA-directed RNA poly 21.1 1.7E+02 0.0038 23.6 4.3 34 264-297 76-110 (112)
76 PF11365 DUF3166: Protein of u 20.9 3.2E+02 0.0069 21.7 5.6 29 24-52 15-43 (96)
77 PRK08898 coproporphyrinogen II 20.7 1.3E+02 0.0028 29.6 4.2 44 281-324 86-129 (394)
78 PF10047 DUF2281: Protein of u 20.0 1.1E+02 0.0024 22.2 2.7 23 273-295 3-25 (66)
No 1
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=100.00 E-value=3.5e-34 Score=295.35 Aligned_cols=221 Identities=37% Similarity=0.572 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 020512 96 AAEKRMEELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFK 175 (325)
Q Consensus 96 ~~~~~~~~l~~~~~~il~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~ 175 (325)
...+.+..++++|..||..|+.|+++|||..|||+..||+||||+||++||||+||+.||.+|.|.++.+|++||||||.
T Consensus 215 ~~~~~~~~~lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~DVRL~F~ 294 (640)
T KOG1474|consen 215 PKSKLTVELLKQCLSILKRLMKHKHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAADVRLTFD 294 (640)
T ss_pred ccccccHHHHHHHHHHHHHHHhccCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHHHHHHHHHHHHH
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhcCCCCCHHHHHHHHHHHHHHHHHHhhCCCCchHHHhhhHHH----------------------HHH---H------
Q 020512 176 NAMKYNDERSDVHVMAKTLLAKFEEKWLQLLPKVTEEEKRREEEE----------------------AEA---Q------ 224 (325)
Q Consensus 176 Na~~YN~~~s~v~~~A~~L~~~fe~~~~~~~~~~~~~~~~~~~ee----------------------~~~---~------ 224 (325)
||++||++|++||.||..|+++|+.+|..++..+........... ... .
T Consensus 295 Ncm~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (640)
T KOG1474|consen 295 NCMTYNPEGSDVYAMAKKLQEVFEERWASMPLEIEESESAVKEEAGMASSDQIPSNSVEGPRSSSFESRESASEPSSELM 374 (640)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccccccCcccccchhcccccCcccccc
Confidence 999999999999999999999999999997655432211100000 000 0
Q ss_pred -------HhHH--hhHHHHHHHhh----hcch-------hhhhhhhhhhH-----HHH----HHhhhhccCCCHHHHHHH
Q 020512 225 -------LDMQ--LAQDAAHAKMA----RDTS-------NELYEVDVHLD-----ELR----EMLVQKCRKTSTEEKRKL 275 (325)
Q Consensus 225 -------~~~~--~~~~~~~~~~~----~~~~-------~el~~~~~~l~-----~l~----~~~~~~~r~mt~eEK~~L 275 (325)
.... ......+...+ ...+ .++..-...+. ..+ .......+.||..++..|
T Consensus 375 ~~~e~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~t~~~~~~l 454 (640)
T KOG1474|consen 375 SEEERKKLLAELKLLLKDVPPQLIALLQRPVSKPPRKIEEELESDKRPLVTGKLIKEKNKKEKAANENKRDMTAPEKAKL 454 (640)
T ss_pred cHHhhhhhHhhhhcchhhhhHHHHhhhhccccCccccccccccccccccchhhhhhhhhccccccccccccccccccccc
Confidence 0000 00000000000 0000 00000000000 000 011224578999999999
Q ss_pred HHHhcCC-ChHhHHHHHHHH--HhcCCCCCCCCCeEEEeCCCCC
Q 020512 276 GAALTRL-SPEDLGKALEIV--AQSNTGFQATAEEVELDMDAQV 316 (325)
Q Consensus 276 ~~~i~~L-~~e~l~~vi~II--~~~~p~~~~~~deiElDid~Ls 316 (325)
...+..| ++..+..+++|+ ....+.+..+.+++++|++.+.
T Consensus 455 ~~~~~~~~~p~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vd 498 (640)
T KOG1474|consen 455 KELLQNLLPPNKLESIVEILKPEKRQLDLSQNDDEIELDLDSVD 498 (640)
T ss_pred hhhccCCCCCccccCcccccchhhhcccccccccchhhcccccc
Confidence 9999995 999999999999 5567778789999999999998
No 2
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.97 E-value=2.9e-30 Score=212.91 Aligned_cols=106 Identities=31% Similarity=0.499 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcCC
Q 020512 103 ELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYND 182 (325)
Q Consensus 103 ~l~~~~~~il~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~ 182 (325)
+|.++|..|++.|++++.++||..||++.. +||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||+
T Consensus 5 ~w~~~c~~il~~l~~~~~s~~F~~PVd~~~--~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~~yN~ 82 (119)
T cd05496 5 DWKKQCKELVNLMWDCEDSEPFRQPVDLLK--YPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSYTP 82 (119)
T ss_pred HHHHHHHHHHHHHHhCCccccccCCCChhh--cCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 688999999999999999999999999987 999999999999999999999999999999999999999999999998
Q ss_pred C-CCHHHHHHHHHHHHHHHHHHhhCCCCc
Q 020512 183 E-RSDVHVMAKTLLAKFEEKWLQLLPKVT 210 (325)
Q Consensus 183 ~-~s~v~~~A~~L~~~fe~~~~~~~~~~~ 210 (325)
+ +|.||.+|..|++.|++++..+.+.+.
T Consensus 83 ~~~s~i~~~a~~L~~~F~~~~~~l~~~~~ 111 (119)
T cd05496 83 NKRSRIYSMTLRLSALFEEHIKKIISDWK 111 (119)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 999999999999999999999976554
No 3
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=1.3e-29 Score=205.91 Aligned_cols=105 Identities=33% Similarity=0.576 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhc
Q 020512 102 EELIRQFGTILRNITQH-KWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKY 180 (325)
Q Consensus 102 ~~l~~~~~~il~~l~~~-~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~Y 180 (325)
.+|.+.|..+++.|+++ +.||+|..||++...++||||++|++||||+||++||++|.|.++.+|.+||+|||.||+.|
T Consensus 2 ~~l~~~~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~y 81 (108)
T cd05495 2 EELRQALMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNAWLY 81 (108)
T ss_pred HHHHHHHHHHHHHHHHcCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 36888999999999999 99999999999987779999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhC
Q 020512 181 NDERSDVHVMAKTLLAKFEEKWLQLL 206 (325)
Q Consensus 181 N~~~s~v~~~A~~L~~~fe~~~~~~~ 206 (325)
|+++|.+|.+|..|++.|++.+..++
T Consensus 82 N~~~s~i~~~a~~l~~~F~~~~~~~~ 107 (108)
T cd05495 82 NRKTSRVYKYCTKLAEVFEQEIDPVM 107 (108)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999987663
No 4
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=1.8e-29 Score=204.84 Aligned_cols=99 Identities=40% Similarity=0.641 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcCCCCC
Q 020512 106 RQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERS 185 (325)
Q Consensus 106 ~~~~~il~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s 185 (325)
-.+..||..|++++.||||..||++...++||||++|++||||+||++||++|.|.|+.+|.+||+|||.||+.||+++|
T Consensus 8 ~~~~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s 87 (107)
T cd05497 8 YLLKVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYNKPGD 87 (107)
T ss_pred HHHHHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 34568899999999999999999998777999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 020512 186 DVHVMAKTLLAKFEEKWLQ 204 (325)
Q Consensus 186 ~v~~~A~~L~~~fe~~~~~ 204 (325)
.++.+|..|++.|++++.+
T Consensus 88 ~i~~~A~~l~~~f~~~l~~ 106 (107)
T cd05497 88 DVVLMAQTLEKLFLQKLAQ 106 (107)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 9999999999999998865
No 5
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=3.1e-29 Score=199.92 Aligned_cols=95 Identities=31% Similarity=0.547 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcCCCC
Q 020512 105 IRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDER 184 (325)
Q Consensus 105 ~~~~~~il~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~ 184 (325)
.++|..|++.|++++.++||..||++.. +||||++|++||||+||++||++|.|.|+.+|.+||+|||.||++||++|
T Consensus 2 ~~~c~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 79 (97)
T cd05505 2 LQKCEEILSKILKYRFSWPFREPVTADE--AEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENG 79 (97)
T ss_pred HHHHHHHHHHHHhCCCcccccCCCChhh--cccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 3679999999999999999999999887 99999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 020512 185 SDVHVMAKTLLAKFEEK 201 (325)
Q Consensus 185 s~v~~~A~~L~~~fe~~ 201 (325)
|.|+.+|..|++.|.++
T Consensus 80 s~i~~~a~~le~~f~~~ 96 (97)
T cd05505 80 SYVLSCMRKTEQCCVNL 96 (97)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999999875
No 6
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=1.3e-28 Score=196.52 Aligned_cols=96 Identities=40% Similarity=0.768 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcCCCC
Q 020512 105 IRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDER 184 (325)
Q Consensus 105 ~~~~~~il~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~ 184 (325)
+..|..||..|++++.+++|..||++.. +|+||++|++||||+||++||++|.|.|+.+|.+||+|||.||+.||+++
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~~--~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 79 (97)
T cd05503 2 LALCETILDEMEAHEDAWPFLEPVNTKL--VPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNEDD 79 (97)
T ss_pred HHHHHHHHHHHHcCCCchhhcCCCCccc--cCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 4689999999999999999999999987 99999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 020512 185 SDVHVMAKTLLAKFEEKW 202 (325)
Q Consensus 185 s~v~~~A~~L~~~fe~~~ 202 (325)
|.++.+|..|++.|+.+|
T Consensus 80 s~i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 80 SEVGRAGHNMRKFFEKRW 97 (97)
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 999999999999999987
No 7
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=1.7e-28 Score=196.39 Aligned_cols=99 Identities=53% Similarity=0.994 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcCCC
Q 020512 104 LIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDE 183 (325)
Q Consensus 104 l~~~~~~il~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~ 183 (325)
++++|..||+.|++++.+++|..||++...++|+||++|++||||+||++||++|.|.|+.+|.+||++||.||+.||++
T Consensus 1 ~~~~c~~il~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn~~ 80 (99)
T cd05506 1 VMKQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNPP 80 (99)
T ss_pred CHHHHHHHHHHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 46899999999999999999999999886669999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 020512 184 RSDVHVMAKTLLAKFEEKW 202 (325)
Q Consensus 184 ~s~v~~~A~~L~~~fe~~~ 202 (325)
+|.++.+|..|++.|+++|
T Consensus 81 ~s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 81 GNDVHTMAKELLKIFETRW 99 (99)
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999987
No 8
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=3.6e-28 Score=196.32 Aligned_cols=100 Identities=31% Similarity=0.467 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcCC
Q 020512 103 ELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYND 182 (325)
Q Consensus 103 ~l~~~~~~il~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~ 182 (325)
.|.+.|..|++.|..++.++||..||++.. +||||++|++||||+||++||++|.|.|+.+|.+||+|||.||+.||+
T Consensus 3 ~~~~~~~~il~~l~~~~~a~~F~~pV~~~~--~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~ 80 (104)
T cd05507 3 AWKKAILLVYRTLASHRYASVFLKPVTEDI--APGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYNS 80 (104)
T ss_pred HHHHHHHHHHHHHHcCCCCHhhcCCCCccc--cCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 477899999999999999999999999876 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHh
Q 020512 183 ERSDVHVMAKTLLAKFEEKWLQ 204 (325)
Q Consensus 183 ~~s~v~~~A~~L~~~fe~~~~~ 204 (325)
++|.||.+|..|++.|.+.+..
T Consensus 81 ~~s~v~~~A~~l~~~~~~~~~~ 102 (104)
T cd05507 81 SDHDVYLMAVEMQREVMSQIQQ 102 (104)
T ss_pred CCCHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999887754
No 9
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=3.7e-28 Score=199.58 Aligned_cols=102 Identities=35% Similarity=0.626 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcC
Q 020512 102 EELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYN 181 (325)
Q Consensus 102 ~~l~~~~~~il~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN 181 (325)
...+..|..|+..|+.++.+++|..||+... +||||++|++||||+||++||++|.|.|+.+|.+||+|||.||++||
T Consensus 11 ~~~~~~c~~il~~l~~~~~s~~F~~pvd~~~--~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~yN 88 (115)
T cd05504 11 PLNLSALEQLLVEIVKHKDSWPFLRPVSKIE--VPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFLYN 88 (115)
T ss_pred HHHHHHHHHHHHHHHhCCCchhhcCCCCccc--cccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 3567799999999999999999999999877 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhh
Q 020512 182 DERSDVHVMAKTLLAKFEEKWLQL 205 (325)
Q Consensus 182 ~~~s~v~~~A~~L~~~fe~~~~~~ 205 (325)
+++|.+|.+|..|+++|+++++++
T Consensus 89 ~~~s~i~~~A~~l~~~f~~~~~~~ 112 (115)
T cd05504 89 PEHTSVYKAGTRLQRFFIKRCRKL 112 (115)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999876
No 10
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=8e-28 Score=195.89 Aligned_cols=103 Identities=36% Similarity=0.634 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhc---CCCCCHHHHHHHHHHHHHchhh
Q 020512 103 ELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEA---KEYKNVREICTDVRLVFKNAMK 179 (325)
Q Consensus 103 ~l~~~~~~il~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~---~~Y~s~~ef~~Dv~Lif~Na~~ 179 (325)
..++.|..|+..|++++.++||..||++ . +|+||++|++||||+||++||++ |.|.++.+|.+||+|||+||+.
T Consensus 4 ~~~~~c~~il~~l~~~~~s~~F~~pv~~-~--~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~Na~~ 80 (109)
T cd05502 4 IDQRKCERLLLELYCHELSLPFHEPVSP-S--VPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKNCYK 80 (109)
T ss_pred HHHHHHHHHHHHHHhCCCChhhcCCCCC-C--CCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999 4 99999999999999999999999 5999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhhCCC
Q 020512 180 YNDERSDVHVMAKTLLAKFEEKWLQLLPK 208 (325)
Q Consensus 180 YN~~~s~v~~~A~~L~~~fe~~~~~~~~~ 208 (325)
||+++|.++.+|..|++.|+++|..++|.
T Consensus 81 yN~~~s~i~~~a~~l~~~f~~~~~~~~p~ 109 (109)
T cd05502 81 FNEEDSEVAQAGKELELFFEEQLKEILPD 109 (109)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999873
No 11
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=7.6e-28 Score=192.50 Aligned_cols=96 Identities=28% Similarity=0.495 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcCC
Q 020512 103 ELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYND 182 (325)
Q Consensus 103 ~l~~~~~~il~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~ 182 (325)
+|...|..++..|. |+.||+|..||++.. +||||.+|++||||+||++||++|.|.++++|.+||+|||.||+.||+
T Consensus 3 ~l~~~L~~~~~~~~-~~~s~~F~~PV~~~~--~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN~ 79 (99)
T cd05508 3 QLSKLLKFALERMK-QPGAEPFLKPVDLEQ--FPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYNG 79 (99)
T ss_pred HHHHHHHHHHHHHh-CcCcchhcCCCChhh--CCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 56667888999999 999999999999987 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 020512 183 ERSDVHVMAKTLLAKFEEK 201 (325)
Q Consensus 183 ~~s~v~~~A~~L~~~fe~~ 201 (325)
++|.++.+|..|.+.|+..
T Consensus 80 ~~s~i~~~A~~l~~~~~~e 98 (99)
T cd05508 80 GDHKLTQAAKAIVKICEQE 98 (99)
T ss_pred CCCHHHHHHHHHHHHHHhh
Confidence 9999999999999988753
No 12
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=1.3e-27 Score=195.34 Aligned_cols=102 Identities=28% Similarity=0.517 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhc
Q 020512 102 EELIRQFGTILRNITQH-KWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKY 180 (325)
Q Consensus 102 ~~l~~~~~~il~~l~~~-~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~Y 180 (325)
.++...|..|+..|+++ +.|++|..||++.. +||||++|++||||+||++||++|.|+|+.+|.+||+|||.||+.|
T Consensus 6 ~~~~~~~~~il~~l~~~~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N~~~y 83 (112)
T cd05510 6 EEFYESLDKVLNELKTYTEHSTPFLTKVSKRE--APDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCLLY 83 (112)
T ss_pred HHHHHHHHHHHHHHHhcCccccchhcCCChhh--cCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 36888999999999999 89999999999987 9999999999999999999999999999999999999999999999
Q ss_pred CCCCC-HHHHHHHHHHHHHHHHHHhh
Q 020512 181 NDERS-DVHVMAKTLLAKFEEKWLQL 205 (325)
Q Consensus 181 N~~~s-~v~~~A~~L~~~fe~~~~~~ 205 (325)
|+++| .++.+|..|++.|+..+..+
T Consensus 84 N~~~s~~~~~~A~~l~~~~~~~~~~~ 109 (112)
T cd05510 84 NSDPSHPLRRHANFMKKKAEHLLKLI 109 (112)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 99876 67899999999999998876
No 13
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=1.1e-27 Score=192.83 Aligned_cols=98 Identities=44% Similarity=0.876 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHcC---CCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcC
Q 020512 105 IRQFGTILRNITQH---KWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYN 181 (325)
Q Consensus 105 ~~~~~~il~~l~~~---~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN 181 (325)
++.|..||+.|+++ +.+++|..||++...++||||++|++||||+||++||++|.|.|+.+|..||+|||.||+.||
T Consensus 2 ~~~c~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yn 81 (102)
T cd05498 2 LKFCSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKYN 81 (102)
T ss_pred hhHHHHHHHHHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 46899999999999 899999999998866799999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 020512 182 DERSDVHVMAKTLLAKFEEKW 202 (325)
Q Consensus 182 ~~~s~v~~~A~~L~~~fe~~~ 202 (325)
+++|.++.+|..|++.|+++|
T Consensus 82 ~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 82 PPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999987
No 14
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=1.7e-27 Score=190.64 Aligned_cols=98 Identities=21% Similarity=0.365 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcCCCC
Q 020512 105 IRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDER 184 (325)
Q Consensus 105 ~~~~~~il~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~ 184 (325)
++.|..||..|++++.|++|..++ .. +||||++|++||||+||++||.+|.|.|+.+|.+||+|||.||++||+++
T Consensus 4 l~~ce~il~~l~~~~~s~~f~~~p--~~--~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN~~~ 79 (102)
T cd05501 4 LLKCEFLLLKVYCMSKSGFFISKP--YY--IRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYKDD 79 (102)
T ss_pred HHHHHHHHHHHHhCcccccccCCC--CC--CCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 456999999999999999997643 34 99999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhhCC
Q 020512 185 SDVHVMAKTLLAKFEEKWLQLLP 207 (325)
Q Consensus 185 s~v~~~A~~L~~~fe~~~~~~~~ 207 (325)
.++.+|..|++.|+++|++++.
T Consensus 80 -~~~~~a~~L~~~Fek~~~~~f~ 101 (102)
T cd05501 80 -DFGQVGITLEKKFEKNFKEVFA 101 (102)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999998763
No 15
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=1.2e-27 Score=192.52 Aligned_cols=98 Identities=36% Similarity=0.790 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHcC---CCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcC
Q 020512 105 IRQFGTILRNITQH---KWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYN 181 (325)
Q Consensus 105 ~~~~~~il~~l~~~---~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN 181 (325)
++.|..||..|+++ ..++||+.||++...++||||++|++||||+||++||++|.|.|+.+|.+||+|||.||+.||
T Consensus 2 ~~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn 81 (102)
T cd05499 2 LKFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFN 81 (102)
T ss_pred hHHHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 46799999999984 579999999999855599999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 020512 182 DERSDVHVMAKTLLAKFEEKW 202 (325)
Q Consensus 182 ~~~s~v~~~A~~L~~~fe~~~ 202 (325)
+++|.++.+|..|++.|+++|
T Consensus 82 ~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 82 PEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999986
No 16
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=1.6e-27 Score=191.39 Aligned_cols=99 Identities=36% Similarity=0.649 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcCCC
Q 020512 104 LIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDE 183 (325)
Q Consensus 104 l~~~~~~il~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~ 183 (325)
++.+|..|++.|.+|+.+++|..||++.. +|+||++|++||||+||++||++|.|.|+.+|.+||+|||.||+.||++
T Consensus 2 ~~~~~~~il~~l~~~~~a~~F~~pv~~~~--~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~ 79 (101)
T cd05509 2 LYTQLKKVLDSLKNHKSAWPFLEPVDKEE--APDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGP 79 (101)
T ss_pred hHHHHHHHHHHHHhCCCchhhcCCCChhh--cCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 56789999999999999999999999998 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHh
Q 020512 184 RSDVHVMAKTLLAKFEEKWLQ 204 (325)
Q Consensus 184 ~s~v~~~A~~L~~~fe~~~~~ 204 (325)
+|.++.+|..|++.|++++++
T Consensus 80 ~s~~~~~a~~l~~~f~~~~~~ 100 (101)
T cd05509 80 DTEYYKCANKLEKFFWKKLKE 100 (101)
T ss_pred CCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999998875
No 17
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=2.5e-27 Score=191.08 Aligned_cols=99 Identities=31% Similarity=0.533 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcCC
Q 020512 103 ELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYND 182 (325)
Q Consensus 103 ~l~~~~~~il~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~ 182 (325)
...+.|..|++.|++++.+++|..||++...++||||++|++||||+||++||.+|.|.++.+|..||+|||.||+.||+
T Consensus 4 ~~~~~~~~ii~~l~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~ 83 (103)
T cd05500 4 HQHKFLLSSIRSLKRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLTFNG 83 (103)
T ss_pred HHHHHHHHHHHHHHcCCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 46779999999999999999999999988777999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 020512 183 ERSDVHVMAKTLLAKFEEK 201 (325)
Q Consensus 183 ~~s~v~~~A~~L~~~fe~~ 201 (325)
++|.++.+|..|++.|++.
T Consensus 84 ~~s~~~~~A~~l~~~fe~~ 102 (103)
T cd05500 84 PEHPVSQMGKRLQAAFEKH 102 (103)
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999875
No 18
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.94 E-value=4.2e-27 Score=192.34 Aligned_cols=104 Identities=27% Similarity=0.467 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcCC
Q 020512 103 ELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYND 182 (325)
Q Consensus 103 ~l~~~~~~il~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~ 182 (325)
++...|..|++.|+.++.+++|..||++.. +||||++|++||||+||++||++|.|.|+.+|.+||+|||.||+.||+
T Consensus 3 ~lr~~L~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~ 80 (112)
T cd05528 3 ELRLFLRDVLKRLASDKRFNAFTKPVDEEE--VPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYNP 80 (112)
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCCCCccc--cCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHCC
Confidence 566788999999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred C----CCHHHHHHHHHHHHHHHHHHhhCCC
Q 020512 183 E----RSDVHVMAKTLLAKFEEKWLQLLPK 208 (325)
Q Consensus 183 ~----~s~v~~~A~~L~~~fe~~~~~~~~~ 208 (325)
+ ||.++.+|..|++.|.+++.+.+|.
T Consensus 81 ~~s~~~s~i~~~A~~L~~~~~~~~~~~~~~ 110 (112)
T cd05528 81 DRDPADKLIRSRACELRDEVHAMIEAELDP 110 (112)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9 4799999999999999999988764
No 19
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=3e-27 Score=191.85 Aligned_cols=99 Identities=29% Similarity=0.441 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHcCCC------CCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHch
Q 020512 104 LIRQFGTILRNITQHKW------AWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNA 177 (325)
Q Consensus 104 l~~~~~~il~~l~~~~~------s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na 177 (325)
|.++|..|++.|.++.. ++||..||+... +||||++|++||||+||++||.+|.|.++.+|..||.|||.||
T Consensus 2 l~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~~--~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na 79 (107)
T cd05516 2 LTKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRKE--LPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNA 79 (107)
T ss_pred HHHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCccc--CCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 56788888888888765 899999999887 9999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHh
Q 020512 178 MKYNDERSDVHVMAKTLLAKFEEKWLQ 204 (325)
Q Consensus 178 ~~YN~~~s~v~~~A~~L~~~fe~~~~~ 204 (325)
+.||++||.||.+|..|++.|.+.+.+
T Consensus 80 ~~yN~~~s~i~~~a~~l~~~f~~~~~~ 106 (107)
T cd05516 80 QTFNLEGSLIYEDSIVLQSVFKSARQK 106 (107)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999998865
No 20
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=8.4e-27 Score=186.14 Aligned_cols=92 Identities=30% Similarity=0.464 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcCCC
Q 020512 104 LIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDE 183 (325)
Q Consensus 104 l~~~~~~il~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~ 183 (325)
|...|..|++.|+.++.+++|..||+... +||||++|++||||+||++||+++.|.|+.+|.+||+|||.||++||++
T Consensus 2 l~~~l~~il~~l~~~~~~~~F~~PV~~~~--~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 79 (98)
T cd05513 2 LQKALEQLIRQLQRKDPHGFFAFPVTDFI--APGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKP 79 (98)
T ss_pred HHHHHHHHHHHHHcCCccccccCcCCccc--cccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 45678899999999999999999999877 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 020512 184 RSDVHVMAKTLLAK 197 (325)
Q Consensus 184 ~s~v~~~A~~L~~~ 197 (325)
+|.+|.+|..|...
T Consensus 80 ~s~~~~~A~~L~~~ 93 (98)
T cd05513 80 DTIYYKAAKKLLHS 93 (98)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999764
No 21
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=2.2e-26 Score=183.90 Aligned_cols=90 Identities=28% Similarity=0.500 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcCCCCC
Q 020512 106 RQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERS 185 (325)
Q Consensus 106 ~~~~~il~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s 185 (325)
..|..++++|+.++.+++|..||++.. +||||++|++||||+||++||.+|.|.|+++|..||+|||.||+.||+++|
T Consensus 4 ~~l~~il~~l~~~~~~~~F~~pVd~~~--~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s 81 (98)
T cd05512 4 VLLRKTLDQLQEKDTAEIFSEPVDLSE--VPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNAKDT 81 (98)
T ss_pred HHHHHHHHHHHhCCCchhhcCCCCccc--cCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 467899999999999999999999987 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 020512 186 DVHVMAKTLLAK 197 (325)
Q Consensus 186 ~v~~~A~~L~~~ 197 (325)
.+|++|..|++.
T Consensus 82 ~~~~~A~~l~~~ 93 (98)
T cd05512 82 IFYRAAVRLRDQ 93 (98)
T ss_pred HHHHHHHHHHHh
Confidence 999999999765
No 22
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=2.3e-26 Score=188.12 Aligned_cols=99 Identities=30% Similarity=0.539 Sum_probs=95.0
Q ss_pred HHHHHHHHHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcCCCCCH
Q 020512 107 QFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSD 186 (325)
Q Consensus 107 ~~~~il~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~ 186 (325)
.+..|+.+|++++.+++|..||++.. +|+||++|++||||+||++||.+|.|.|+.+|.+||+|||.||+.||+++|.
T Consensus 4 ~l~~ii~~l~~~~~s~~F~~pv~~~~--~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~ 81 (112)
T cd05511 4 ILDEIVNELKNLPDSWPFHTPVNKKK--VPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGPDSV 81 (112)
T ss_pred HHHHHHHHHHhCCCchhhcCCCChhh--cccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 46789999999999999999999987 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhCC
Q 020512 187 VHVMAKTLLAKFEEKWLQLLP 207 (325)
Q Consensus 187 v~~~A~~L~~~fe~~~~~~~~ 207 (325)
++.+|..|.+.|+..+..+..
T Consensus 82 i~~~A~~l~~~~~~~~~~~~~ 102 (112)
T cd05511 82 YTKKAKEMLELAEELLAEREE 102 (112)
T ss_pred HHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999999988743
No 23
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=4.3e-26 Score=183.86 Aligned_cols=96 Identities=29% Similarity=0.450 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHH------cCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchh
Q 020512 105 IRQFGTILRNIT------QHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAM 178 (325)
Q Consensus 105 ~~~~~~il~~l~------~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~ 178 (325)
.+.|..|++.|+ .++.+++|..||+... +||||++|++||||+||++||++|.|.|+.+|.+||+|||.||+
T Consensus 2 ~~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~~~--~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~ 79 (103)
T cd05519 2 KAAMLEIYDAVLNCEDETGRKLSELFLEKPSKKL--YPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANAR 79 (103)
T ss_pred HHHHHHHHHHHHHhcCcCCCchhHHhcCCCCCCC--CcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 457888888888 4456999999999988 99999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHH
Q 020512 179 KYNDERSDVHVMAKTLLAKFEEKW 202 (325)
Q Consensus 179 ~YN~~~s~v~~~A~~L~~~fe~~~ 202 (325)
.||+++|.+|.+|..|++.|.+++
T Consensus 80 ~yn~~~s~i~~~A~~l~~~f~~~~ 103 (103)
T cd05519 80 TYNQEGSIVYEDAVEMEKAFKKKY 103 (103)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999998864
No 24
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.93 E-value=1.1e-25 Score=184.26 Aligned_cols=102 Identities=24% Similarity=0.381 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHcC------CCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHch
Q 020512 104 LIRQFGTILRNITQH------KWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNA 177 (325)
Q Consensus 104 l~~~~~~il~~l~~~------~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na 177 (325)
..+.|..|++.|.++ ..+.+|..+|+... +||||++|++||||+||++||.+|.|.|+.+|.+||+|||.||
T Consensus 3 ~~~~c~~il~~l~~~~~~~g~~l~~~F~~~p~~~~--~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na 80 (113)
T cd05524 3 PIAVCQELYDTIRNYKSEDGRILCESFIRVPKRRN--EPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNA 80 (113)
T ss_pred HHHHHHHHHHHHHhhcccCCCchhHHHhcCCCccc--CCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHH
Confidence 467899999999964 45678999999877 9999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHhhCC
Q 020512 178 MKYNDERSDVHVMAKTLLAKFEEKWLQLLP 207 (325)
Q Consensus 178 ~~YN~~~s~v~~~A~~L~~~fe~~~~~~~~ 207 (325)
+.||+++|.+|.+|..|++.|++.+.++.+
T Consensus 81 ~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~ 110 (113)
T cd05524 81 KAYYKPDSPEHKDACKLWELFLSARNEVLS 110 (113)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999988754
No 25
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.92 E-value=1.6e-25 Score=181.19 Aligned_cols=96 Identities=27% Similarity=0.481 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHc------CCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhh
Q 020512 106 RQFGTILRNITQ------HKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMK 179 (325)
Q Consensus 106 ~~~~~il~~l~~------~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~ 179 (325)
+.|..|++.|.. ++.+++|..||+... +||||++|++||||+||++||.++.|.|+.+|.+||.|||.||+.
T Consensus 3 ~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~~~--~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~~ 80 (105)
T cd05515 3 QKLWELYNAVKNYTDGRGRRLSLIFMRLPSKSE--YPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNACK 80 (105)
T ss_pred HHHHHHHHHHHHhhCcCCCcccHHhccCCCccc--CCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 455666666654 457899999999988 999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHH
Q 020512 180 YNDERSDVHVMAKTLLAKFEEKWL 203 (325)
Q Consensus 180 YN~~~s~v~~~A~~L~~~fe~~~~ 203 (325)
||+++|.+|.+|..|++.|.+...
T Consensus 81 yN~~~s~i~~~A~~L~~~~~~~~~ 104 (105)
T cd05515 81 YNEPDSQIYKDALTLQKVLLETKR 104 (105)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999987653
No 26
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.92 E-value=3e-25 Score=178.80 Aligned_cols=100 Identities=31% Similarity=0.438 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchh
Q 020512 99 KRMEELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAM 178 (325)
Q Consensus 99 ~~~~~l~~~~~~il~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~ 178 (325)
+++..++..+....+ ...+..+.+|..+|+... +||||++|++||||+||++||.+|.|.|+.+|.+||+|||.||+
T Consensus 3 ~~~~~l~~~v~~~~d-~~gr~~~~~F~~~p~~~~--~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~ 79 (103)
T cd05518 3 KRMLALFLYVLEYRE-GSGRRLCDLFMEKPSKKD--YPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNAR 79 (103)
T ss_pred HHHHHHHHHHHHhhc-cCCCcccHHHhcCCCccc--CccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
Confidence 445555555544422 346678999999999988 99999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHH
Q 020512 179 KYNDERSDVHVMAKTLLAKFEEK 201 (325)
Q Consensus 179 ~YN~~~s~v~~~A~~L~~~fe~~ 201 (325)
.||+++|.||.+|..|++.|.++
T Consensus 80 ~yN~~~s~i~~~A~~le~~~~~~ 102 (103)
T cd05518 80 HYNEEGSQVYEDANILEKVLKEK 102 (103)
T ss_pred HHCCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999764
No 27
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=5e-25 Score=178.37 Aligned_cols=96 Identities=31% Similarity=0.397 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHcC------CCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHch
Q 020512 104 LIRQFGTILRNITQH------KWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNA 177 (325)
Q Consensus 104 l~~~~~~il~~l~~~------~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na 177 (325)
|...|..|++.|... ..++||..+|+... +||||++|++||||+||++||++|.|.|+.+|.+||.|||.||
T Consensus 3 l~~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~k~~--~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na 80 (106)
T cd05525 3 LAQVLKEICDAIITYKDSNGQSLAIPFINLPSKKK--NPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNA 80 (106)
T ss_pred HHHHHHHHHHHHHHhhccCCCcccHhhccCCCccc--CCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 445667777777654 45799999999988 9999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHH
Q 020512 178 MKYNDERSDVHVMAKTLLAKFEEK 201 (325)
Q Consensus 178 ~~YN~~~s~v~~~A~~L~~~fe~~ 201 (325)
+.||+++|.+|.+|..|++.|++.
T Consensus 81 ~~yn~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 81 EKYYGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHc
Confidence 999999999999999999999863
No 28
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.92 E-value=3.4e-25 Score=178.54 Aligned_cols=83 Identities=28% Similarity=0.496 Sum_probs=79.3
Q ss_pred cCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcCCCCCHHHHHHHHHHH
Q 020512 117 QHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVHVMAKTLLA 196 (325)
Q Consensus 117 ~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~v~~~A~~L~~ 196 (325)
.+..++||..||+... +||||++|++||||+||++||++|.|.++.+|.+||+|||.||+.||+++|.+|.+|..|++
T Consensus 20 g~~~s~pF~~~p~~~~--~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~~s~i~~~A~~L~~ 97 (103)
T cd05520 20 GQLLAEPFLKLPSKRK--YPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNVPNSRIYKDAEKLQK 97 (103)
T ss_pred CCCccHhhhcCCCccc--CCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3458999999999888 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 020512 197 KFEEK 201 (325)
Q Consensus 197 ~fe~~ 201 (325)
.|+++
T Consensus 98 ~f~~~ 102 (103)
T cd05520 98 LMQAK 102 (103)
T ss_pred HHHHh
Confidence 99874
No 29
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=1.2e-24 Score=181.96 Aligned_cols=99 Identities=28% Similarity=0.407 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHH---cCCCCCCccCcCCCC-CCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchh
Q 020512 103 ELIRQFGTILRNIT---QHKWAWPFMQPVDVK-GLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAM 178 (325)
Q Consensus 103 ~l~~~~~~il~~l~---~~~~s~~F~~pv~~~-~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~ 178 (325)
.+...|..+++.|. .++.+++|..||+.. . +|+||++|++||||+||++||++|.|+++.+|..||+|||.||+
T Consensus 24 ~~~~~i~~~l~~l~~~~~~~~~~~F~~pv~~~~~--~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~Na~ 101 (128)
T cd05529 24 EERERLISGLDKLLLSLQLEIAEYFEYPVDLRAW--YPDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLILSNAE 101 (128)
T ss_pred HHHHHHHHHHHHHHhcccCcccccccCCCCcccc--CCcHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 34556777888888 899999999999998 6 99999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHH
Q 020512 179 KYNDERSDVHVMAKTLLAKFEEKWL 203 (325)
Q Consensus 179 ~YN~~~s~v~~~A~~L~~~fe~~~~ 203 (325)
+||+++|.++.+|..|++.|..++.
T Consensus 102 ~yN~~~s~i~~~A~~l~~~~~~~l~ 126 (128)
T cd05529 102 TFNEPNSEIAKKAKRLSDWLLRILS 126 (128)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999998875
No 30
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.92 E-value=5.2e-25 Score=177.48 Aligned_cols=93 Identities=25% Similarity=0.390 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHcC------CCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhh
Q 020512 106 RQFGTILRNITQH------KWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMK 179 (325)
Q Consensus 106 ~~~~~il~~l~~~------~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~ 179 (325)
+.|..|++.|+.+ ..+++|..+|+... +||||++|++||||+||++||+++.|.++.+|..||+|||.||+.
T Consensus 3 ~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~~~~--~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~ 80 (103)
T cd05517 3 QILEQLLEAVMTATDPSGRLISELFQKLPSKVL--YPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAKT 80 (103)
T ss_pred HHHHHHHHHHHHhhCcCCCChhHHHhcCCCCCC--CCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHH
Confidence 4566677777654 46799999999988 999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHH
Q 020512 180 YNDERSDVHVMAKTLLAKFEE 200 (325)
Q Consensus 180 YN~~~s~v~~~A~~L~~~fe~ 200 (325)
||+++|.+|.+|..|++.|+.
T Consensus 81 yN~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 81 FNEPGSQVYKDANAIKKIFTA 101 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999975
No 31
>smart00297 BROMO bromo domain.
Probab=99.92 E-value=1.5e-24 Score=175.10 Aligned_cols=101 Identities=43% Similarity=0.728 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcC
Q 020512 102 EELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYN 181 (325)
Q Consensus 102 ~~l~~~~~~il~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN 181 (325)
..+...|..|++.+.+++.+++|..||++.. +|+||.+|++||||++|++||++|.|.|+.+|.+||++||.||+.||
T Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~F~~~~~~~~--~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~n 83 (107)
T smart00297 6 KKLQSLLKAVLDKLDSHRLSWPFLKPVDRKE--APDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKTYN 83 (107)
T ss_pred HHHHHHHHHHHHHHHhCccchhhccCCChhh--ccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 3567788999999999999999999999988 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHh
Q 020512 182 DERSDVHVMAKTLLAKFEEKWLQ 204 (325)
Q Consensus 182 ~~~s~v~~~A~~L~~~fe~~~~~ 204 (325)
+++|.++.+|..|.+.|++.|.+
T Consensus 84 ~~~s~~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 84 GPDSEVYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999875
No 32
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=2.1e-23 Score=168.51 Aligned_cols=82 Identities=26% Similarity=0.376 Sum_probs=79.0
Q ss_pred CCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHH
Q 020512 118 HKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVHVMAKTLLAK 197 (325)
Q Consensus 118 ~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~v~~~A~~L~~~ 197 (325)
++.+++|..+|+... +||||++|++||||+||++||.+|.|.++.+|..||+|||.||+.||+++|.+|.+|..|++.
T Consensus 22 ~~l~~~F~~~p~~~~--~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~i~~~A~~l~~~ 99 (104)
T cd05522 22 RLLTLHFEKLPDKAR--EPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKLYNENDSQEYKDAVLLEKE 99 (104)
T ss_pred CcccHHHhcCCCccc--cCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 578999999999887 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 020512 198 FEEK 201 (325)
Q Consensus 198 fe~~ 201 (325)
|++.
T Consensus 100 f~~l 103 (104)
T cd05522 100 ARLL 103 (104)
T ss_pred HHHh
Confidence 9864
No 33
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=2.8e-23 Score=168.16 Aligned_cols=96 Identities=24% Similarity=0.312 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHcC------CCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHch
Q 020512 104 LIRQFGTILRNITQH------KWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNA 177 (325)
Q Consensus 104 l~~~~~~il~~l~~~------~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na 177 (325)
|.++|..+++.|+.. ..+.+|..+++... +||||++|++||||+||++||++ |.|+.+|.+||.|||.||
T Consensus 2 l~~~~~~l~~~i~~~~~~~g~~~~~~F~~lp~~~~--~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na 77 (106)
T cd05521 2 LSKKLKPLYDGIYTLKEENGIEIHPIFNVLPLRKD--YPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNA 77 (106)
T ss_pred HHHHHHHHHHHHHhhcCcCCCCchHhhhcCCcccc--CccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHH
Confidence 345677777777655 35679999998877 99999999999999999999998 999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHH
Q 020512 178 MKYNDERSDVHVMAKTLLAKFEEKWL 203 (325)
Q Consensus 178 ~~YN~~~s~v~~~A~~L~~~fe~~~~ 203 (325)
+.||+++|.+|.+|..|++.|..++.
T Consensus 78 ~~yN~~~s~i~~~A~~le~~~~~~~~ 103 (106)
T cd05521 78 RLYNTKGSVIYKYALILEKYINDVII 103 (106)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999998763
No 34
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.89 E-value=3.3e-23 Score=160.04 Aligned_cols=84 Identities=43% Similarity=0.726 Sum_probs=79.6
Q ss_pred HHHHHHHHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcCCCCCHH
Q 020512 108 FGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDV 187 (325)
Q Consensus 108 ~~~il~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~v 187 (325)
|..|++.|++++.+++|..||+... +|+|+.+|++||||++|++||++|.|.++.+|.+||++||.||+.||+++|.+
T Consensus 1 C~~il~~l~~~~~~~~F~~~~~~~~--~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~ 78 (84)
T PF00439_consen 1 CREILEELMKHPISSPFSKPVDPKE--YPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPPDSPI 78 (84)
T ss_dssp HHHHHHHHHTSTTGGGGSSSTHTTT--STTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred CHHHHHHHHcCCCchhhcCCCChhh--CCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCcCHH
Confidence 8899999999999999999998887 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 020512 188 HVMAKT 193 (325)
Q Consensus 188 ~~~A~~ 193 (325)
|.+|.+
T Consensus 79 ~~~A~~ 84 (84)
T PF00439_consen 79 YKAAEK 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999964
No 35
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.89 E-value=6.4e-23 Score=161.34 Aligned_cols=95 Identities=42% Similarity=0.663 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHcC--CCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcCCC
Q 020512 106 RQFGTILRNITQH--KWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDE 183 (325)
Q Consensus 106 ~~~~~il~~l~~~--~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~ 183 (325)
..|..|++.+..+ +.+++|..||++.. +|+||.+|++||||++|++||.+|.|.++.+|.+||++||.||+.||++
T Consensus 3 ~~~~~i~~~l~~~~~~~~~~F~~~~~~~~--~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~~ 80 (99)
T cd04369 3 KKLRSLLDALKKLKRDLSEPFLEPVDPKE--APDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNGP 80 (99)
T ss_pred HHHHHHHHHHHhhcccccHHHhcCCChhc--CCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4688999999999 99999999999977 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 020512 184 RSDVHVMAKTLLAKFEEKW 202 (325)
Q Consensus 184 ~s~v~~~A~~L~~~fe~~~ 202 (325)
+|.++.+|..|...|++.|
T Consensus 81 ~~~~~~~a~~l~~~~~~~~ 99 (99)
T cd04369 81 GSPIYKDAKKLEKLFEKLL 99 (99)
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 9999999999999998764
No 36
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=2.9e-22 Score=162.52 Aligned_cols=98 Identities=16% Similarity=0.168 Sum_probs=85.4
Q ss_pred HHHHHHHHHc-CCCCCCccCcCCCCC---CCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcCCC
Q 020512 108 FGTILRNITQ-HKWAWPFMQPVDVKG---LGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDE 183 (325)
Q Consensus 108 ~~~il~~l~~-~~~s~~F~~pv~~~~---~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~ 183 (325)
+..++..+.+ -+.++||..||.... .++|+||.+|++||||+||++||++|.|+++++|.+||.|||+||..||++
T Consensus 5 L~f~~~~~k~~lp~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yNg~ 84 (109)
T cd05492 5 LKFIVSRMKSWLPPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFHGA 84 (109)
T ss_pred HHHHHHHHHhcCcccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4456667666 566899999996333 349999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhh
Q 020512 184 RSDVHVMAKTLLAKFEEKWLQL 205 (325)
Q Consensus 184 ~s~v~~~A~~L~~~fe~~~~~~ 205 (325)
+|.++.+|..|.+....-+.++
T Consensus 85 ~s~~~~~A~~l~~d~~~el~Ei 106 (109)
T cd05492 85 DSEQYDAARWLYRDTCHDLREL 106 (109)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988877766554
No 37
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.81 E-value=1.1e-19 Score=147.17 Aligned_cols=98 Identities=15% Similarity=0.198 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHcCC------CCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHch
Q 020512 104 LIRQFGTILRNITQHK------WAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNA 177 (325)
Q Consensus 104 l~~~~~~il~~l~~~~------~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na 177 (325)
+...+..|+..+++|. .+.+|.+.++ . .|+||.+|+.||||++|++||++|.|.++++|..||.+||.||
T Consensus 4 vq~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~--~--~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~NA 79 (110)
T cd05526 4 VQELLATLFVSVMNHQDEEGRCYSDSLAELPE--L--AVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLERA 79 (110)
T ss_pred HHHHHHHHHHHHHhccCCCCCCchHHHHHCCC--c--ccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHHH
Confidence 3445667777787774 6899999888 2 5788999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHhh
Q 020512 178 MKYNDERSDVHVMAKTLLAKFEEKWLQL 205 (325)
Q Consensus 178 ~~YN~~~s~v~~~A~~L~~~fe~~~~~~ 205 (325)
++||.+||.+|.+|..|+.+|.....++
T Consensus 80 r~yN~~~S~iy~dA~eLq~~f~~~rd~~ 107 (110)
T cd05526 80 RRLSRTDSEIYEDAVELQQFFIKIRDEL 107 (110)
T ss_pred HHhCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999877655
No 38
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=99.78 E-value=2.5e-19 Score=196.28 Aligned_cols=97 Identities=38% Similarity=0.762 Sum_probs=94.8
Q ss_pred HHHHHHHHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcCCCCCHH
Q 020512 108 FGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDV 187 (325)
Q Consensus 108 ~~~il~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~v 187 (325)
|..||..|+.|+.||||+.||++.. +||||+||++||||+||+.|+..|.|.++.+|..||.|||.||.+||.+ |.+
T Consensus 1306 ~e~il~e~~~~~~awPFlepVn~~~--vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~-s~i 1382 (1404)
T KOG1245|consen 1306 CEDILHELVVHKAAWPFLEPVNPKE--VPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNED-SEI 1382 (1404)
T ss_pred HHHHHHHHHHhhhcchhhccCChhh--cccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc-hhh
Confidence 8999999999999999999999999 9999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHhhCC
Q 020512 188 HVMAKTLLAKFEEKWLQLLP 207 (325)
Q Consensus 188 ~~~A~~L~~~fe~~~~~~~~ 207 (325)
+.++..|..+|...|...+|
T Consensus 1383 ~~ag~~l~~ff~~~~~~~~~ 1402 (1404)
T KOG1245|consen 1383 GRAGTCLRRFFHKRWRKKFP 1402 (1404)
T ss_pred hhhcchHHHHHHHHHHhhcC
Confidence 99999999999999988765
No 39
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.77 E-value=9.4e-19 Score=170.84 Aligned_cols=90 Identities=31% Similarity=0.446 Sum_probs=85.9
Q ss_pred CCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHH
Q 020512 119 KWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVHVMAKTLLAKF 198 (325)
Q Consensus 119 ~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~v~~~A~~L~~~f 198 (325)
..+++|..+|+... +|+||.||+.||||++|+++|+.+.|.++++|..|+.|||.||.+||+++|.||.+|..|++.|
T Consensus 164 ~~s~~F~~~p~k~~--~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~N~~~yN~~~s~v~~~a~~l~~~~ 241 (371)
T COG5076 164 FLSSIFLGLPSKRE--YPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNGPDSSVYVDAKELEKYF 241 (371)
T ss_pred ccccccccCCcccc--CCChheeecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhccCCCcchhhhhHHHHHHH
Confidence 57899999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCc
Q 020512 199 EEKWLQLLPKVT 210 (325)
Q Consensus 199 e~~~~~~~~~~~ 210 (325)
...+..+.+...
T Consensus 242 ~~~i~~~~~~~~ 253 (371)
T COG5076 242 LKLIEEIPEEML 253 (371)
T ss_pred HHHHHhccccch
Confidence 999998876543
No 40
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.67 E-value=4.7e-17 Score=166.67 Aligned_cols=142 Identities=28% Similarity=0.460 Sum_probs=118.4
Q ss_pred CCCCCCcccccccCCC---CCccchhhhHHhHHhHHH-HHHHHHHHHHHHHHHHHHHcCCCCCCccCcCCCCCCCCCchh
Q 020512 64 NSKGSSTLKDKEKERH---VPSIRKQQQEASRREKAA-EKRMEELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYY 139 (325)
Q Consensus 64 ~~~g~s~~~~~~r~r~---~~~~kk~~~~~~~~e~~~-~~~~~~l~~~~~~il~~l~~~~~s~~F~~pv~~~~~~~PdY~ 139 (325)
+.+|.++.+++.+.+. +|+.+...+......... ...+..+...+..|+.+|..|..+|||.+||+..+ +||||
T Consensus 563 v~~gl~~~~~~~~~~~~~~iPg~~E~~~~~~~~~~r~~~~~~~~~~s~~~~il~~l~~h~~awPf~~Pv~~~e--~pdyy 640 (720)
T KOG1472|consen 563 VYPGLECFKDGVPQIPPRKIPGFRESGWKPEKESYRQEYKKPGKLFSAIQNILDQLQNHGDAWPFLKPVNKKE--VPDYY 640 (720)
T ss_pred cccccccccccccccCcccCCCchhhccCcchHHHHhhhcccchhhHHHHhHHhhhhcCCccCCccCcccccc--CCcHH
Confidence 5677777777655433 566655555544333331 13344567788999999999999999999999999 99999
Q ss_pred hhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHHHHHHHhhCC
Q 020512 140 EVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVHVMAKTLLAKFEEKWLQLLP 207 (325)
Q Consensus 140 ~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~v~~~A~~L~~~fe~~~~~~~~ 207 (325)
.+|++||||.||+.+|..+.|..+..|++|+..||.||+.||+.++..|+.|..|...|..++...+.
T Consensus 641 ~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn~~~~~y~k~~~~le~~~~~k~~~~i~ 708 (720)
T KOG1472|consen 641 DVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYNGSDTQYYKCAQALEKFFLFKLNELIL 708 (720)
T ss_pred HHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccCCccchheecccchhhhhcchhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999888876643
No 41
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.44 E-value=6.5e-14 Score=114.86 Aligned_cols=79 Identities=22% Similarity=0.270 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcC-------CCCCHHHHHHHHHHHHHc
Q 020512 104 LIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAK-------EYKNVREICTDVRLVFKN 176 (325)
Q Consensus 104 l~~~~~~il~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~-------~Y~s~~ef~~Dv~Lif~N 176 (325)
.+..|..++..+..++.+|||..||++...++||||++||+||||+||+++|.++ .|..-..+.+++..++.|
T Consensus 4 ~~~~~l~~l~~~~~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (114)
T cd05494 4 ALERVLRELKRHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDEGR 83 (114)
T ss_pred HHHHHHHHHHHhhhCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHccccccccccccccccccccccccccc
Confidence 4567778888888889999999999996666999999999999999999999997 355556667777777777
Q ss_pred hhhcCC
Q 020512 177 AMKYND 182 (325)
Q Consensus 177 a~~YN~ 182 (325)
|..+|.
T Consensus 84 ~~~~~~ 89 (114)
T cd05494 84 RSPSNI 89 (114)
T ss_pred cCcccc
Confidence 777775
No 42
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.18 E-value=1.7e-11 Score=100.05 Aligned_cols=43 Identities=19% Similarity=0.315 Sum_probs=40.2
Q ss_pred ccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcCCCC
Q 020512 142 IDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDER 184 (325)
Q Consensus 142 Ik~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~ 184 (325)
+-.||||+||++||.+|.|.++.+|.+||+|||.||+.||+++
T Consensus 61 ~~y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~d 103 (119)
T cd05491 61 KFYNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRE 103 (119)
T ss_pred eEeccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHH
Confidence 3468999999999999999999999999999999999999874
No 43
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=99.16 E-value=4.1e-11 Score=128.06 Aligned_cols=100 Identities=27% Similarity=0.415 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcCCCC
Q 020512 105 IRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDER 184 (325)
Q Consensus 105 ~~~~~~il~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~ 184 (325)
.+.+..++..+...+....|..||+..+ +|||.++|++||||.|++.++.+|.|+++++|.+|+.+|..||+.||..+
T Consensus 567 ~kLl~~~l~~lq~kD~~gif~~pvd~~e--~pdy~~iik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~~yn~~d 644 (1051)
T KOG0955|consen 567 KKLLQKSLDKLQKKDSYGIFAEPVDPSE--LPDYIDIIKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCMEYNAKD 644 (1051)
T ss_pred HHHHHHHHHHhhcccccCceeeccChhh--cccHHHHhcCccchhhhhhhccccchhhhhHHHHhHhHhHhHHHHhhccC
Confidence 3346678888888999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhhC
Q 020512 185 SDVHVMAKTLLAKFEEKWLQLL 206 (325)
Q Consensus 185 s~v~~~A~~L~~~fe~~~~~~~ 206 (325)
..+|..|..+++.....+....
T Consensus 645 tv~~r~av~~~e~~~~~~~~ar 666 (1051)
T KOG0955|consen 645 TVYYRAAVRLRELIKKDFRNAR 666 (1051)
T ss_pred eehHhhhHHHHhhhhhHHHhcc
Confidence 9999999999999888877653
No 44
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.08 E-value=1.5e-10 Score=121.33 Aligned_cols=100 Identities=30% Similarity=0.431 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHcC------CCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhh
Q 020512 106 RQFGTILRNITQH------KWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMK 179 (325)
Q Consensus 106 ~~~~~il~~l~~~------~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~ 179 (325)
+.|..|+....++ ..+..|...++... +||||.||++||++..|+++|.++.|.+..+...||.++|.||++
T Consensus 1027 ~~~~~i~~~~~~~~~~~~r~~~~~~~~~~s~k~--~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~ 1104 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDSAGRELSEVFLKLPSRKE--YPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNART 1104 (1157)
T ss_pred HHHHHHHHHHHhcccccccccchhcccCccccc--ccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhh
Confidence 4577777776644 46789999999998 999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhhCC
Q 020512 180 YNDERSDVHVMAKTLLAKFEEKWLQLLP 207 (325)
Q Consensus 180 YN~~~s~v~~~A~~L~~~fe~~~~~~~~ 207 (325)
||..||.||.+|..|+.+|......+..
T Consensus 1105 ~~~egs~~y~d~~~l~~~~~~~~~~~~~ 1132 (1157)
T KOG0386|consen 1105 YNEEGSRVYEDAIVLQSVFKSARQEISK 1132 (1157)
T ss_pred hccCCceechhHHHHHHHHhhhHHHHhc
Confidence 9999999999999999999998887754
No 45
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=99.06 E-value=1.4e-10 Score=124.01 Aligned_cols=96 Identities=29% Similarity=0.527 Sum_probs=86.2
Q ss_pred HHHHHHHHHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcCCCCCH
Q 020512 107 QFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSD 186 (325)
Q Consensus 107 ~~~~il~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~ 186 (325)
.+-.|+.+++.-+.+|+|..||+++. +|+||.+|++||||.||.+++..+.|.+..+|.+||++|+.||..||+..+.
T Consensus 1386 ~~d~~vs~~~~ipes~~f~~~v~~k~--~~~yy~kik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~i~~n~~~~ng~e~~ 1463 (1563)
T KOG0008|consen 1386 ILDNIVSQMKEIPESWPFHEPVNKKR--VPDYYKKIKNPMDLETILKNIPPHKYDSRSEFLDDVNLIYVNSVEYNGAESA 1463 (1563)
T ss_pred hhhhHHHHHHhcchhcccccccchhh--chHHHHHhcChhhHHHHhhcCCccccccHHHHhhhhHhhcccceeecCcccc
Confidence 34567778778899999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 020512 187 VHVMAKTLLAKFEEKWLQ 204 (325)
Q Consensus 187 v~~~A~~L~~~fe~~~~~ 204 (325)
+..-|+.+-.+....+.+
T Consensus 1464 y~~k~~k~~ev~~~~~~e 1481 (1563)
T KOG0008|consen 1464 YTKKARKIGEVGLANLLE 1481 (1563)
T ss_pred ccHHHHHHHHHHHHHHHH
Confidence 988888777666555443
No 46
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.94 E-value=1.5e-09 Score=110.45 Aligned_cols=96 Identities=26% Similarity=0.308 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHcC------CCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchh
Q 020512 105 IRQFGTILRNITQH------KWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAM 178 (325)
Q Consensus 105 ~~~~~~il~~l~~~------~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~ 178 (325)
..++..|+..+..+ .....|.+.++... .|+||.+|..||+|..|++|+..+.|.+.+.|..|+.+|+.||+
T Consensus 54 ~~~f~~il~~~~~~~d~~gk~~~d~feklp~~~~--~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~lm~ena~ 131 (629)
T KOG1827|consen 54 IPKFKTILASLLDLKDDEGKQLFDKFEKLPSRKE--FPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLDFLLMTENAR 131 (629)
T ss_pred HHHHHHHHHHHHhhccccCcccchhHhhcccccc--CCCcceeecCcccHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence 33455555555544 35788999999998 99999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHH
Q 020512 179 KYNDERSDVHVMAKTLLAKFEEKW 202 (325)
Q Consensus 179 ~YN~~~s~v~~~A~~L~~~fe~~~ 202 (325)
.||.++|.+|++|..|+..|...-
T Consensus 132 ~~n~~ds~~~~~s~~l~~~~~~~~ 155 (629)
T KOG1827|consen 132 LYNRPDSLIYKDSGELEKYFISLE 155 (629)
T ss_pred HhcCcchhhhhhhhhhhcchhhhh
Confidence 999999999999999999998755
No 47
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.89 E-value=1.2e-09 Score=112.78 Aligned_cols=80 Identities=28% Similarity=0.501 Sum_probs=69.3
Q ss_pred cCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcCCCCCHHHHHHHHHHH
Q 020512 117 QHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVHVMAKTLLA 196 (325)
Q Consensus 117 ~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~v~~~A~~L~~ 196 (325)
.+..+|+|..||+... .|+||.||+.||||+|+.+++..+.|.+.++|..|+.+||.||.+||.+.+.....-..+..
T Consensus 300 ~~~~s~~~~~kvs~~~--a~~y~~i~k~pmdl~t~~~k~~~~~y~~~~~fv~d~~~~~~n~~~~n~ee~~~~~~~~vv~~ 377 (720)
T KOG1472|consen 300 RTEHSTPFLEKVSKED--APNYYQIIKAPMDLSTELKKLKSGPYCSKEEFVNDLMLIWRNCEKYNSEESHGLIEFAVIMN 377 (720)
T ss_pred ccccccccccCCChhh--CcchHHhhhcchHHHHHHHHhccccccchhHHHHHHHHHHhcchhhccccchhhhhhhhhhc
Confidence 3789999999999998 99999999999999999999999999999999999999999999999765554444333333
Q ss_pred HH
Q 020512 197 KF 198 (325)
Q Consensus 197 ~f 198 (325)
-+
T Consensus 378 ~~ 379 (720)
T KOG1472|consen 378 SK 379 (720)
T ss_pred cC
Confidence 33
No 48
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.89 E-value=2.5e-09 Score=114.72 Aligned_cols=99 Identities=28% Similarity=0.471 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcCCC
Q 020512 104 LIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDE 183 (325)
Q Consensus 104 l~~~~~~il~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~ 183 (325)
+...+..|++++...+...+|..||+... ++|||.||+.||||.|+++.+....|.+-++|..|+.||++|..+||++
T Consensus 1262 ~ss~l~~i~n~~~~~~~t~~f~~Pv~~k~--v~dyy~vi~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng~ 1339 (1563)
T KOG0008|consen 1262 LSSILETIINQARSSPNTYPFPTPVNAKE--VKDYYRVITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNGP 1339 (1563)
T ss_pred cccchHHHHHHHhcCCCCcCCCCccchhh--ccchhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcCc
Confidence 34467889999999999999999999998 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHh
Q 020512 184 RSDVHVMAKTLLAKFEEKWLQ 204 (325)
Q Consensus 184 ~s~v~~~A~~L~~~fe~~~~~ 204 (325)
.+.+...+..+.......|..
T Consensus 1340 ~~~~t~~~q~mls~~~~~~~e 1360 (1563)
T KOG0008|consen 1340 LASLTRQQQSMLSLCFEKLKE 1360 (1563)
T ss_pred hHHHHHHHHHHHHHHHHhhch
Confidence 999999988887777666644
No 49
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=98.72 E-value=2.8e-09 Score=110.97 Aligned_cols=92 Identities=38% Similarity=0.672 Sum_probs=85.6
Q ss_pred HHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcCCCCCHHHHHHHH
Q 020512 114 NITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVHVMAKT 193 (325)
Q Consensus 114 ~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~v~~~A~~ 193 (325)
.+..|.++|+|..||+...+++|+||.+|++|||++||..++.++.|.+..+..+|+.-+|.||..||..+..|+.++..
T Consensus 3 ~~~~~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~~ 82 (640)
T KOG1474|consen 3 EARKHKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQS 82 (640)
T ss_pred ccccccccccccCccchhhccchhhhcccCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCCccchhhcccc
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 020512 194 LLAKFEEKWLQL 205 (325)
Q Consensus 194 L~~~fe~~~~~~ 205 (325)
+...|.......
T Consensus 83 ~~~~~~~~~~~~ 94 (640)
T KOG1474|consen 83 LEKLFPKKLRSM 94 (640)
T ss_pred chhhcccccccc
Confidence 999987665554
No 50
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=98.32 E-value=1e-07 Score=91.38 Aligned_cols=89 Identities=26% Similarity=0.257 Sum_probs=78.7
Q ss_pred HHHHHHHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcCCCCCHHH
Q 020512 109 GTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVH 188 (325)
Q Consensus 109 ~~il~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~v~ 188 (325)
..++.++-+...-..|.-||.... .|+|.+||+.|||+.|++.+++.+.|.+..+|..|.+++..||..||...+.++
T Consensus 25 ehhlrkl~sKdp~q~fafplt~~m--ap~y~~iis~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~~Tv~~ 102 (418)
T KOG1828|consen 25 EHHLRKLPSKDPKQKFAFPLTDKM--APNYLEIISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLHPTVPI 102 (418)
T ss_pred HHHHHhccccChhhhhccccchhh--ccchHhhhhcccccccccccCCCccceechhhhhhhcccccchhhhhcCCcccc
Confidence 345555556666677888898888 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 020512 189 VMAKTLLAKFE 199 (325)
Q Consensus 189 ~~A~~L~~~fe 199 (325)
..|+.|..+-.
T Consensus 103 ~aaKrL~~v~~ 113 (418)
T KOG1828|consen 103 VAAKRLCPVRL 113 (418)
T ss_pred ccccccchhhc
Confidence 99998876543
No 51
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=98.24 E-value=6.1e-07 Score=86.17 Aligned_cols=82 Identities=12% Similarity=0.052 Sum_probs=74.8
Q ss_pred HHHHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcCCCCCHHHHHH
Q 020512 112 LRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVHVMA 191 (325)
Q Consensus 112 l~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~v~~~A 191 (325)
.+++........|..||.... +|.|.-+|++|+|++|++.+..++.|.| -+|..|+.+|+.||++||.+...+|..|
T Consensus 217 ~~kl~~~~p~~~lnyg~tas~--aP~YSm~Ik~~~~~~Tygdk~~andy~S-~~f~~D~kl~~l~amT~gehsk~yyela 293 (418)
T KOG1828|consen 217 EDKLNRVDPVAYLNYGPTASF--APGYSMTITEVEPPGTYGDKSSANDYES-LSFTQDRKLIALKAVTNGEHSKSYYELA 293 (418)
T ss_pred HHHhcccCchhhhcccchhhh--cccccccccccCCCcchhhhhhhhhhhh-hhhhcccchhhHHHHhcCCcchHHHHHH
Confidence 445556667888999998888 9999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHH
Q 020512 192 KTLLA 196 (325)
Q Consensus 192 ~~L~~ 196 (325)
+.+..
T Consensus 294 nk~lh 298 (418)
T KOG1828|consen 294 NKQLH 298 (418)
T ss_pred Hhhhh
Confidence 98766
No 52
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=97.53 E-value=2.1e-05 Score=77.05 Aligned_cols=92 Identities=32% Similarity=0.503 Sum_probs=83.2
Q ss_pred HHHHHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcCCCCCHHHHH
Q 020512 111 ILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVHVM 190 (325)
Q Consensus 111 il~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~v~~~ 190 (325)
++.....+..+|+|..+++... .|+|+++|..+|+++|.+-++..+.|.....|..|..++|.||..||+....++..
T Consensus 271 ~i~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (371)
T COG5076 271 LITNSQAHVGAWPFLRPVSDEE--VPDYYKDIRDPMDLSTKELKLRNNYYRPEETFVRDAKLFFDNCVMYNGEVTDYYKN 348 (371)
T ss_pred cccccccccccccccccCCccc--ccchhhhhhcccccccchhhhhcccCCCccccccccchhhhcccccchhhhhhhhh
Confidence 3444466778999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 020512 191 AKTLLAKFEEKWLQ 204 (325)
Q Consensus 191 A~~L~~~fe~~~~~ 204 (325)
+..+...+.....-
T Consensus 349 ~~~~~~~~~~~~~~ 362 (371)
T COG5076 349 ANVLEDFVIKKTRL 362 (371)
T ss_pred ccchhhhHhhhhhh
Confidence 99988888766543
No 53
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=97.24 E-value=0.00043 Score=57.93 Aligned_cols=68 Identities=18% Similarity=0.331 Sum_probs=58.3
Q ss_pred CCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHHHHHHHhhCCCCchH
Q 020512 145 PMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVHVMAKTLLAKFEEKWLQLLPKVTEE 212 (325)
Q Consensus 145 PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~v~~~A~~L~~~fe~~~~~~~~~~~~~ 212 (325)
|-||..|++|++.|.|+|+.+|..||-.|+.-++.=.+....+-+....+..+|.+.+..+++++..+
T Consensus 59 p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~vf~Wf~~~ 126 (131)
T cd05493 59 PLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESVFPWFNSE 126 (131)
T ss_pred cccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHhccccccc
Confidence 88999999999999999999999999999998887665555555666677788999999999987654
No 54
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=91.86 E-value=0.1 Score=55.31 Aligned_cols=60 Identities=18% Similarity=0.379 Sum_probs=52.5
Q ss_pred ccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHHHHH
Q 020512 142 IDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVHVMAKTLLAKFEEK 201 (325)
Q Consensus 142 Ik~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~v~~~A~~L~~~fe~~ 201 (325)
-.-|..|..|+.+|+++.|++.+.|..||..|..||.+|.+.+-.+-..+..|...|..-
T Consensus 1050 fpvpls~evi~~rlEn~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~T 1109 (1113)
T KOG0644|consen 1050 FPVPLSLEVIRSRLENNYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDRT 1109 (1113)
T ss_pred CCCcccHHHHHHHHHhhhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhhh
Confidence 345789999999999999999999999999999999999998887777777777776543
No 55
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=89.88 E-value=0.2 Score=54.89 Aligned_cols=65 Identities=22% Similarity=0.248 Sum_probs=56.3
Q ss_pred CCCCccCcCCCCC---CCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHH--HHHHHHHchhhcCCCC
Q 020512 120 WAWPFMQPVDVKG---LGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICT--DVRLVFKNAMKYNDER 184 (325)
Q Consensus 120 ~s~~F~~pv~~~~---~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~--Dv~Lif~Na~~YN~~~ 184 (325)
.+..|..|++... +..++|..+|+.|||+...-.++..+.|.++.+|.. ++.|||.|++.||+..
T Consensus 532 ~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~ 601 (1080)
T KOG0732|consen 532 SSVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGK 601 (1080)
T ss_pred cccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCc
Confidence 3567888877432 225699999999999999999999999999999999 9999999999999765
No 56
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=77.99 E-value=1.1 Score=48.03 Aligned_cols=69 Identities=10% Similarity=0.079 Sum_probs=54.4
Q ss_pred ccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCC--------------C----------CHHH------HHHHHHHH
Q 020512 124 FMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEY--------------K----------NVRE------ICTDVRLV 173 (325)
Q Consensus 124 F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y--------------~----------s~~e------f~~Dv~Li 173 (325)
|.-+++... .|-|..+..-|.+|+|++..|.+..| . ++.+ ...-+.+|
T Consensus 86 lv~~~d~~~--pp~~~~~a~vpTlLgtg~qsLl~r~k~~~~~~~~~s~~~~~h~~~~~~~~~sl~s~~~~~~~h~~a~~i 163 (1113)
T KOG0644|consen 86 LVPMLDKPI--PPRYCTIARVPTLLGTGRQSLLRRAKDIRHTVWKGSAFRWPHMHADQVRGVSLRSIGGGFEIHHRAPSI 163 (1113)
T ss_pred hccCcCCCC--CcceeeeecccchhcchhHHHHhhhhhcccccccccccccccccCcccccceeccCCcchhhhhcCccc
Confidence 344667666 88999999999999999999999887 2 3334 66778899
Q ss_pred HHchhhcCCCCCHHHHHHHHHH
Q 020512 174 FKNAMKYNDERSDVHVMAKTLL 195 (325)
Q Consensus 174 f~Na~~YN~~~s~v~~~A~~L~ 195 (325)
-.||+.++.|++ +++.++.+.
T Consensus 164 ~~at~~~akPgt-mvqkmk~ik 184 (1113)
T KOG0644|consen 164 GCATFSIAKPGT-MVQKMKNIK 184 (1113)
T ss_pred ccceeeecCcHH-HHHHHHHHH
Confidence 999999999999 555554443
No 57
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=73.70 E-value=0.47 Score=49.39 Aligned_cols=76 Identities=5% Similarity=-0.128 Sum_probs=68.1
Q ss_pred CCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHH
Q 020512 121 AWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVHVMAKTLLAKF 198 (325)
Q Consensus 121 s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~v~~~A~~L~~~f 198 (325)
...|..-++... +|+||.+++-||.+....+++..+.|.....|..|+.+.|.|+..|+.....++..+..|.+.+
T Consensus 213 Ier~w~~~dg~k--~~~~~w~~rP~~T~H~a~r~F~k~Evfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~~d 288 (629)
T KOG1827|consen 213 IERLWKLPDGEK--WPQGCWIYRPEETVHRADRKFYKQEVFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPENLSEED 288 (629)
T ss_pred ecccccCccccc--ccceeEeeCCccCccccccchhcccceecccccccHHHHhhcceEEeehhHhhhcCcccccccc
Confidence 355666666666 8999999999999999999999999999999999999999999999999999999998886654
No 58
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=62.32 E-value=27 Score=27.66 Aligned_cols=48 Identities=19% Similarity=0.360 Sum_probs=41.4
Q ss_pred CCCCCHHHHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHHHHHHHhh
Q 020512 158 KEYKNVREICTDVRLVFKNAMKYNDERSDVHVMAKTLLAKFEEKWLQL 205 (325)
Q Consensus 158 ~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~v~~~A~~L~~~fe~~~~~~ 205 (325)
..|.|..-|...+..|-.....++..+..+..+|..+...|++.|.+.
T Consensus 4 ~~~pTsn~~f~~i~~i~~~l~~~~~~d~~l~~ma~~M~~KfdKYw~~~ 51 (101)
T PF14372_consen 4 SSYPTSNLYFHEIWKIKDLLRDWNNDDPDLKNMAKKMKEKFDKYWKDC 51 (101)
T ss_pred CCcCcHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 458888888888888888777778778899999999999999999865
No 59
>PHA01750 hypothetical protein
Probab=61.46 E-value=14 Score=27.19 Aligned_cols=29 Identities=24% Similarity=0.526 Sum_probs=25.9
Q ss_pred HHHHHHhhhHHHHHHhHHHHHHHHHHHHH
Q 020512 24 AEVESFTLRVDDIFQKVDKLEERVNEIEQ 52 (325)
Q Consensus 24 ~~~~~~~~~~~~~~~k~~~l~~~~~~~~~ 52 (325)
+||..|+.+++++.-+++.+++++.++-.
T Consensus 42 ~ELdNL~~ei~~~kikqDnl~~qv~eik~ 70 (75)
T PHA01750 42 SELDNLKTEIEELKIKQDELSRQVEEIKR 70 (75)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 79999999999999999999999977643
No 60
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=54.48 E-value=19 Score=26.58 Aligned_cols=27 Identities=19% Similarity=0.342 Sum_probs=22.9
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 020512 149 STIKKQMEAKEYKNVREICTDVRLVFK 175 (325)
Q Consensus 149 ~tIk~kL~~~~Y~s~~ef~~Dv~Lif~ 175 (325)
.-|+..+..|.|.|.+++++|...++.
T Consensus 12 ~~i~~~V~sG~Y~s~SEVir~aLR~le 38 (69)
T TIGR02606 12 SFIRSQVQSGRYGSASEVVRAALRLLE 38 (69)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHH
Confidence 468899999999999999988776554
No 61
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=42.32 E-value=61 Score=25.21 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=35.1
Q ss_pred hhhccCCCHHHHHHHHHHhc-CCChHhHHHHHHHHHhcCCCCC
Q 020512 261 VQKCRKTSTEEKRKLGAALT-RLSPEDLGKALEIVAQSNTGFQ 302 (325)
Q Consensus 261 ~~~~r~mt~eEK~~L~~~i~-~L~~e~l~~vi~II~~~~p~~~ 302 (325)
-.+...+|..|-.+++...+ .+++++...|+.|++....++.
T Consensus 9 n~Kln~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIf 51 (85)
T PF11116_consen 9 NQKLNNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIF 51 (85)
T ss_pred HHHHhcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCC
Confidence 34567899999999999996 6899999999999998766554
No 62
>PF03693 RHH_2: Uncharacterised protein family (UPF0156); InterPro: IPR022789 This family of proteins are about 80 amino acids in length and their function is unknown. The proteins contain a conserved GRY motif. This family appears to be related to ribbon-helix-helix DNA-binding proteins. ; PDB: 3KXE_C.
Probab=38.14 E-value=43 Score=25.51 Aligned_cols=26 Identities=15% Similarity=0.353 Sum_probs=20.7
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHH
Q 020512 149 STIKKQMEAKEYKNVREICTDVRLVF 174 (325)
Q Consensus 149 ~tIk~kL~~~~Y~s~~ef~~Dv~Lif 174 (325)
.-|+..+.+|.|.|.+++++|--.++
T Consensus 15 ~~i~~~V~sG~Y~s~SEvvR~aLRll 40 (80)
T PF03693_consen 15 AFIEEQVASGRYSSASEVVREALRLL 40 (80)
T ss_dssp HHHHHHHCTTS-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 45899999999999999998865444
No 63
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=36.32 E-value=47 Score=19.40 Aligned_cols=18 Identities=17% Similarity=0.429 Sum_probs=9.0
Q ss_pred HHHHHhhhHHHHHHhHHH
Q 020512 25 EVESFTLRVDDIFQKVDK 42 (325)
Q Consensus 25 ~~~~~~~~~~~~~~k~~~ 42 (325)
|++++|+++.++..++..
T Consensus 2 E~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSE 19 (23)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 455555555555444443
No 64
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=27.88 E-value=1.5e+02 Score=19.73 Aligned_cols=28 Identities=14% Similarity=0.414 Sum_probs=21.9
Q ss_pred hHHHHHHhhh-HHHHHHhHHHHHHHHHHH
Q 020512 23 VAEVESFTLR-VDDIFQKVDKLEERVNEI 50 (325)
Q Consensus 23 ~~~~~~~~~~-~~~~~~k~~~l~~~~~~~ 50 (325)
..++++||+. |+|++..+.|..+.|-+.
T Consensus 2 ~~dle~~KqEIL~EvrkEl~K~K~EIIeA 30 (40)
T PF08776_consen 2 SSDLERLKQEILEEVRKELQKVKEEIIEA 30 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999987 478888888888777543
No 65
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=25.25 E-value=1.4e+02 Score=23.59 Aligned_cols=32 Identities=25% Similarity=0.530 Sum_probs=24.9
Q ss_pred HHHHHHhhhHHHHHHhHHHHHHHHHHHHHhhh
Q 020512 24 AEVESFTLRVDDIFQKVDKLEERVNEIEQFYL 55 (325)
Q Consensus 24 ~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~ 55 (325)
.+++.+-+++|+|..+|.+||.-+...+.+..
T Consensus 59 ~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk 90 (99)
T PF10046_consen 59 EELQPYLQQIDQIEEQVTELEQTVYELDEYSK 90 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777778888888888888888887777544
No 66
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=24.01 E-value=48 Score=33.93 Aligned_cols=28 Identities=21% Similarity=0.590 Sum_probs=23.6
Q ss_pred HHHHHhhhHHHHHHhHHHHHHHHHHHHH
Q 020512 25 EVESFTLRVDDIFQKVDKLEERVNEIEQ 52 (325)
Q Consensus 25 ~~~~~~~~~~~~~~k~~~l~~~~~~~~~ 52 (325)
+++.|+++|++|++++..+..+|+.++.
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k~e~ 59 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDKVEK 59 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccchhhH
Confidence 6888888888888888888888887776
No 67
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=23.99 E-value=1.4e+02 Score=20.57 Aligned_cols=24 Identities=25% Similarity=0.587 Sum_probs=19.6
Q ss_pred HHHHHHhhhHHHHHHhHHHHHHHH
Q 020512 24 AEVESFTLRVDDIFQKVDKLEERV 47 (325)
Q Consensus 24 ~~~~~~~~~~~~~~~k~~~l~~~~ 47 (325)
+.|+.|.+.|+.+..++..||.++
T Consensus 23 ~~lq~Lt~kL~~vs~RLe~LEn~~ 46 (47)
T PF10393_consen 23 SALQSLTQKLDAVSKRLEALENRL 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 578888888888888888888765
No 68
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=23.97 E-value=1e+02 Score=25.43 Aligned_cols=29 Identities=21% Similarity=0.346 Sum_probs=21.5
Q ss_pred HHhhhHHHHHHhHHHHHHHHHHHHHhhhh
Q 020512 28 SFTLRVDDIFQKVDKLEERVNEIEQFYLN 56 (325)
Q Consensus 28 ~~~~~~~~~~~k~~~l~~~~~~~~~~~~s 56 (325)
.=++.|+++..+.+.+|+|+.++|.+..|
T Consensus 78 s~~~~l~~~~~~~~~~e~Rlr~mE~yVTS 106 (118)
T PRK10697 78 SSSELLDEVDRELAAGEQRLREMERYVTS 106 (118)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44566778888888888888888876555
No 69
>PRK14145 heat shock protein GrpE; Provisional
Probab=23.19 E-value=5.5e+02 Score=23.04 Aligned_cols=46 Identities=13% Similarity=0.202 Sum_probs=26.6
Q ss_pred CCCCCcccccccCCCCCCChHHHHHHhhhHHHHHHhHHHHHHHHHH
Q 020512 4 MDAPISNFTAVHAGNPESDVAEVESFTLRVDDIFQKVDKLEERVNE 49 (325)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~ 49 (325)
|+.++..-..+...+......+++.++..++++..++..+..++-+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~e~~~l~~~l~~le~e~~el~d~~lR 70 (196)
T PRK14145 25 MEGPPEDEQAQQNQPQQQTVDEIEELKQKLQQKEVEAQEYLDIAQR 70 (196)
T ss_pred cCCCcHHHHHhhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433333333344345567888888888888777766655533
No 70
>smart00657 RPOL4c DNA-directed RNA-polymerase II subunit.
Probab=22.96 E-value=1.5e+02 Score=24.06 Aligned_cols=37 Identities=24% Similarity=0.311 Sum_probs=32.4
Q ss_pred hccCCCHHHHHHHHHHhc-CCChHhHHHHHHHHHhcCC
Q 020512 263 KCRKTSTEEKRKLGAALT-RLSPEDLGKALEIVAQSNT 299 (325)
Q Consensus 263 ~~r~mt~eEK~~L~~~i~-~L~~e~l~~vi~II~~~~p 299 (325)
..+|-|.+|...|...+. .++++++..++++|.+.-|
T Consensus 79 Nl~P~s~~E~~~lI~sl~~r~~ee~l~~iL~~i~~~~~ 116 (118)
T smart00657 79 NLRPETAEEAQLLIPSLEERIDEEELEELLDDLSSLLP 116 (118)
T ss_pred CCCCCCHHHHHHHhhhhhccCCHHHHHHHHHHHHHhcC
Confidence 468999999999999996 7899999999999998644
No 71
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=22.83 E-value=1.1e+02 Score=25.35 Aligned_cols=28 Identities=14% Similarity=0.331 Sum_probs=20.4
Q ss_pred HhhhHHHHHHhHHHHHHHHHHHHHhhhh
Q 020512 29 FTLRVDDIFQKVDKLEERVNEIEQFYLN 56 (325)
Q Consensus 29 ~~~~~~~~~~k~~~l~~~~~~~~~~~~s 56 (325)
=++.|.++..+.+.+|+|+.++|.+..|
T Consensus 82 ~~~~l~~~~~~~~~~e~Rl~~mE~yVTS 109 (121)
T TIGR02978 82 PRQALREVKREFRDLERRLRNMERYVTS 109 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3556777777778888888888876555
No 72
>PF03874 RNA_pol_Rpb4: RNA polymerase Rpb4; InterPro: IPR005574 The eukaryotic RNA polymerase subunits RPB4 and RPB7 form a heterodimer that reversibly associates with the RNA polymerase II core. Archaeal cells contain a single RNAP made up of about 12 subunits, displaying considerable homology to the eukaryotic RNAPII subunits. The RPB4 and RPB7 homologs are called subunits F and E, respectively, and have been shown to form a stable heterodimer. While the RPB7 homologue is reasonably well conserved, the similarity between the eukaryotic RPB4 and the archaeal F subunit is barely detectable [].; GO: 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3AYH_A 3H3V_E 4A3C_D 3PO3_D 3HOX_D 2R92_D 3HOU_D 1Y77_D 2R7Z_D 3QT1_D ....
Probab=22.53 E-value=82 Score=25.19 Aligned_cols=34 Identities=35% Similarity=0.474 Sum_probs=28.2
Q ss_pred ccCCCHHHHHHHHHHhc-CCChHhHHHHHHHHHhc
Q 020512 264 CRKTSTEEKRKLGAALT-RLSPEDLGKALEIVAQS 297 (325)
Q Consensus 264 ~r~mt~eEK~~L~~~i~-~L~~e~l~~vi~II~~~ 297 (325)
.+|-|.+|-+.|...+. .++++++.+|+++|++.
T Consensus 82 l~P~~~~El~~ii~~~~~r~~ee~l~~iL~~v~~~ 116 (117)
T PF03874_consen 82 LRPTTAVELRAIIESLESRFSEEDLEEILDLVSKY 116 (117)
T ss_dssp H--SSHHHHHHHSTTGTTTSTHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHh
Confidence 57888999999988887 58999999999999874
No 73
>PF11458 Mistic: Membrane-integrating protein Mistic; InterPro: IPR021078 Mistic is an integral membrane protein that folds autonomously into the membrane []. It is conserved in the Bacilli bacteria. The protein forms a helical bundle with a polar lipid-facing surface. Mistic can be used for high-level production of other membrane proteins in their native conformations [].
Probab=22.38 E-value=92 Score=23.65 Aligned_cols=30 Identities=27% Similarity=0.502 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHHHhcCCChHhHHHHHHHHHh
Q 020512 266 KTSTEEKRKLGAALTRLSPEDLGKALEIVAQ 296 (325)
Q Consensus 266 ~mt~eEK~~L~~~i~~L~~e~l~~vi~II~~ 296 (325)
..|..||.+|+.+|.++ .+-|..+|+.-.+
T Consensus 2 KVt~~EkeQLS~AID~m-nEGLD~fI~lYNe 31 (84)
T PF11458_consen 2 KVTDQEKEQLSTAIDRM-NEGLDTFIQLYNE 31 (84)
T ss_pred CCchHHHHHHHHHHHHH-HhhHHHHHHHHcc
Confidence 35788999999999888 4567777766554
No 74
>PF10845 DUF2576: Protein of unknown function (DUF2576); InterPro: IPR022556 The function of this viral family of proteins is unknown. The entry contains Orf5 from Autographa californica nuclear polyhedrosis virus (AcMNPV).
Probab=21.47 E-value=1.2e+02 Score=20.67 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=19.2
Q ss_pred HHHHHhhhHHHHHHhHHHHHHH
Q 020512 25 EVESFTLRVDDIFQKVDKLEER 46 (325)
Q Consensus 25 ~~~~~~~~~~~~~~k~~~l~~~ 46 (325)
+-+.||+.+.+++.+++.|..|
T Consensus 12 dreqlrrelnsLR~~vhelctR 33 (48)
T PF10845_consen 12 DREQLRRELNSLRRSVHELCTR 33 (48)
T ss_pred CHHHHHHHHHHHHHHHHHHHHh
Confidence 5678999999999999999865
No 75
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=21.12 E-value=1.7e+02 Score=23.61 Aligned_cols=34 Identities=32% Similarity=0.378 Sum_probs=29.6
Q ss_pred ccCCCHHHHHHHHHHh-cCCChHhHHHHHHHHHhc
Q 020512 264 CRKTSTEEKRKLGAAL-TRLSPEDLGKALEIVAQS 297 (325)
Q Consensus 264 ~r~mt~eEK~~L~~~i-~~L~~e~l~~vi~II~~~ 297 (325)
.-|-|.+|-+.|-..+ ..+++++|.+|+++|.+.
T Consensus 76 L~P~~~dElrai~~~~~~~~~~e~l~~ILd~l~k~ 110 (112)
T PRK14981 76 ILPETRDELRAIFAKERYTLSPEELDEILDIVKKY 110 (112)
T ss_pred cCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHh
Confidence 4688899999988888 668999999999999875
No 76
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=20.90 E-value=3.2e+02 Score=21.74 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=25.4
Q ss_pred HHHHHHhhhHHHHHHhHHHHHHHHHHHHH
Q 020512 24 AEVESFTLRVDDIFQKVDKLEERVNEIEQ 52 (325)
Q Consensus 24 ~~~~~~~~~~~~~~~k~~~l~~~~~~~~~ 52 (325)
.|++-+|+.+.+|..+-+.+...++.+..
T Consensus 15 EEa~LlRRkl~ele~eN~~l~~EL~kyk~ 43 (96)
T PF11365_consen 15 EEAELLRRKLSELEDENKQLTEELNKYKS 43 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999999999999999977655
No 77
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=20.71 E-value=1.3e+02 Score=29.64 Aligned_cols=44 Identities=14% Similarity=-0.167 Sum_probs=32.6
Q ss_pred CCChHhHHHHHHHHHhcCCCCCCCCCeEEEeCCCCCchhhhhhc
Q 020512 281 RLSPEDLGKALEIVAQSNTGFQATAEEVELDMDAQVLVLDQCDC 324 (325)
Q Consensus 281 ~L~~e~l~~vi~II~~~~p~~~~~~deiElDid~Ls~~~l~~~~ 324 (325)
-|++++|.++++.|++..|-.....=.+|.+.+.++...|+.++
T Consensus 86 ~L~~~~L~~ll~~i~~~~~~~~~~eit~E~~p~~~~~e~L~~l~ 129 (394)
T PRK08898 86 LLSAAGLDRLLSDVRALLPLDPDAEITLEANPGTFEAEKFAQFR 129 (394)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCCeEEEEECCCCCCHHHHHHHH
Confidence 47899999999999998874433445566666888887777653
No 78
>PF10047 DUF2281: Protein of unknown function (DUF2281); InterPro: IPR018739 This domain is found in putative uncharacterised proteins, though some proteins contaning this domain are described as a transcritional regulator of the Xre family.
Probab=20.03 E-value=1.1e+02 Score=22.24 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=18.7
Q ss_pred HHHHHHhcCCChHhHHHHHHHHH
Q 020512 273 RKLGAALTRLSPEDLGKALEIVA 295 (325)
Q Consensus 273 ~~L~~~i~~L~~e~l~~vi~II~ 295 (325)
..|...|..||++....|++.|.
T Consensus 3 ~~l~~~i~~LP~~~~~Evldfi~ 25 (66)
T PF10047_consen 3 EELLEKIQQLPEELQQEVLDFIE 25 (66)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHH
Confidence 46788999999999888877663
Done!