Query 020512
Match_columns 325
No_of_seqs 340 out of 1459
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 04:05:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020512.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020512hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ouo_A HUNK1 protein, bromodom 100.0 1.7E-30 5.9E-35 216.7 11.8 110 98-207 17-129 (130)
2 3d7c_A General control of amin 100.0 8E-30 2.8E-34 207.4 12.4 103 102-206 6-108 (112)
3 3g0l_A Hwalp4, bromodomain adj 100.0 6.7E-30 2.3E-34 209.4 11.7 103 103-207 13-115 (117)
4 2oss_A HUNK1 protein, bromodom 100.0 1.6E-29 5.6E-34 210.0 12.3 105 103-207 21-125 (127)
5 3nxb_A CAT eye syndrome critic 100.0 9.7E-30 3.3E-34 208.1 10.4 101 102-204 15-115 (116)
6 2i7k_A Bromodomain-containing 100.0 3.4E-29 1.2E-33 205.3 12.8 104 101-206 6-109 (117)
7 3jvl_A Bromodomain-containing 100.0 8.7E-30 3E-34 209.6 9.4 106 102-207 8-116 (120)
8 3q2e_A Bromodomain and WD repe 100.0 1.5E-29 5.2E-34 209.1 10.3 106 103-210 10-116 (123)
9 1e6i_A Transcriptional activat 100.0 1.1E-29 3.8E-34 209.3 9.4 101 104-206 14-114 (121)
10 3mb3_A PH-interacting protein; 100.0 7.3E-30 2.5E-34 214.2 8.1 106 102-209 20-126 (135)
11 2dat_A Possible global transcr 100.0 4.4E-29 1.5E-33 206.3 12.3 103 103-207 13-121 (123)
12 3p1f_A CREB-binding protein; s 100.0 3.8E-29 1.3E-33 205.5 11.6 105 102-206 10-115 (119)
13 2yyn_A Transcription intermedi 100.0 6.2E-29 2.1E-33 208.6 12.9 104 104-210 21-126 (135)
14 4alg_A Bromodomain-containing 100.0 4.5E-29 1.5E-33 213.9 12.3 107 103-209 32-138 (154)
15 2d9e_A Peregrin; four-helix bu 100.0 6.4E-29 2.2E-33 204.8 12.5 101 103-205 7-107 (121)
16 3fkm_X Signaling protein; brom 100.0 5E-29 1.7E-33 216.1 11.7 105 102-206 20-124 (166)
17 2grc_A Probable global transcr 100.0 1.3E-28 4.6E-33 205.0 11.7 102 103-206 11-119 (129)
18 3mb4_A Protein polybromo-1; PB 100.0 1.7E-28 5.8E-33 203.0 11.8 102 103-206 15-122 (124)
19 3mqm_A Probable histone-lysine 100.0 1.1E-28 3.7E-33 204.8 10.3 106 101-208 7-118 (126)
20 3rcw_A Bromodomain-containing 100.0 1.7E-28 5.8E-33 205.9 11.3 103 101-205 11-113 (135)
21 3hme_A Bromodomain-containing 100.0 1.5E-28 5.2E-33 203.1 10.8 100 103-204 13-112 (123)
22 3k2j_A Protein polybromo-1; PB 100.0 3.6E-28 1.2E-32 202.6 12.5 102 102-205 16-123 (130)
23 3iu5_A Protein polybromo-1; PB 100.0 2.3E-28 7.9E-33 200.0 10.7 103 103-207 5-113 (116)
24 3ljw_A Protein polybromo-1; al 100.0 4.6E-28 1.6E-32 199.3 12.0 101 103-205 8-114 (120)
25 3tlp_A Protein polybromo-1; PB 99.9 1.7E-27 5.8E-32 203.2 10.6 104 107-212 28-138 (150)
26 3uv4_A Second bromodomain of h 99.9 2.3E-27 8E-32 204.0 11.0 103 103-207 29-132 (158)
27 2ri7_A Nucleosome-remodeling f 99.9 5.4E-27 1.8E-31 204.5 10.8 102 103-206 72-173 (174)
28 3dai_A ATPase family AAA domai 99.9 1.9E-26 6.5E-31 192.2 12.9 103 100-204 7-113 (130)
29 3o36_A Transcription intermedi 99.9 1.6E-26 5.6E-31 203.3 11.6 102 103-207 81-184 (184)
30 3uv5_A Transcription initiatio 99.9 3.9E-25 1.3E-29 205.1 12.8 103 103-207 14-116 (265)
31 3u5n_A E3 ubiquitin-protein li 99.9 3.5E-25 1.2E-29 198.4 12.0 104 103-209 81-204 (207)
32 2dkw_A Hypothetical protein KI 99.9 5.9E-25 2E-29 183.4 12.5 99 100-205 9-111 (131)
33 2ro1_A Transcription intermedi 99.9 1.9E-25 6.6E-30 197.4 8.7 99 104-209 77-180 (189)
34 3uv5_A Transcription initiatio 99.9 2.2E-24 7.4E-29 200.1 12.6 99 106-206 139-238 (265)
35 3aad_A Transcription initiatio 99.9 1.1E-24 3.9E-29 204.6 9.3 102 102-205 46-147 (292)
36 3aad_A Transcription initiatio 99.9 1.5E-23 5.1E-28 197.0 11.9 98 107-206 173-271 (292)
37 2r0y_A Chromatin structure-rem 99.9 6.9E-24 2.4E-28 200.7 7.7 87 117-205 177-263 (311)
38 2r10_A Chromatin structure-rem 99.9 3.4E-23 1.2E-27 199.8 9.8 87 117-205 227-313 (361)
39 2r10_A Chromatin structure-rem 99.8 2.9E-22 9.8E-27 193.4 4.1 98 104-205 79-179 (361)
40 2r0y_A Chromatin structure-rem 99.8 2.8E-21 9.6E-26 182.9 7.8 94 108-205 33-129 (311)
41 3iu6_A Protein polybromo-1; PB 99.8 3.1E-19 1.1E-23 150.2 12.3 97 104-206 8-110 (147)
42 3lqh_A Histone-lysine N-methyl 99.7 1.3E-16 4.6E-21 139.6 8.7 98 102-212 74-171 (183)
43 2jns_A Bromodomain-containing 99.5 2.3E-14 7.8E-19 111.6 4.0 62 262-323 13-75 (90)
44 2lm0_A AF4/FMR2 family member 93.2 0.08 2.7E-06 42.4 4.1 56 267-323 59-115 (125)
45 2yy0_A C-MYC-binding protein; 56.6 16 0.00056 24.7 4.3 31 22-52 17-47 (53)
46 1txp_A HnRNP C, heterogeneous 34.3 31 0.0011 20.1 2.4 22 27-48 2-23 (28)
47 3twe_A Alpha4H; unknown functi 26.5 86 0.003 17.6 3.3 21 27-47 4-24 (27)
48 3kxe_C Antitoxin protein PARD- 24.8 70 0.0024 23.8 3.7 28 149-176 16-43 (88)
49 1use_A VAsp, vasodilator-stimu 24.2 1.2E+02 0.0042 19.7 4.2 28 22-49 5-33 (45)
50 2c35_A Human RPB4, DNA-directe 23.4 53 0.0018 26.9 3.0 35 264-298 113-148 (152)
No 1
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.97 E-value=1.7e-30 Score=216.74 Aligned_cols=110 Identities=41% Similarity=0.759 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCC---CCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 020512 98 EKRMEELIRQFGTILRNITQHKW---AWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVF 174 (325)
Q Consensus 98 ~~~~~~l~~~~~~il~~l~~~~~---s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif 174 (325)
.+++.+.++.|..||..|+.++. +|+|..||++..+++||||++|++||||+||++||++|.|.++.+|.+||+|||
T Consensus 17 ~~~~~~~l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~ 96 (130)
T 2ouo_A 17 SSKVSEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMF 96 (130)
T ss_dssp --CHHHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34556778899999999998874 899999999987789999999999999999999999999999999999999999
Q ss_pred HchhhcCCCCCHHHHHHHHHHHHHHHHHHhhCC
Q 020512 175 KNAMKYNDERSDVHVMAKTLLAKFEEKWLQLLP 207 (325)
Q Consensus 175 ~Na~~YN~~~s~v~~~A~~L~~~fe~~~~~~~~ 207 (325)
.||++||+++|.||.+|..|++.|+++|.+++.
T Consensus 97 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~lp~ 129 (130)
T 2ouo_A 97 SNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPD 129 (130)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999999999998753
No 2
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.96 E-value=8e-30 Score=207.38 Aligned_cols=103 Identities=30% Similarity=0.477 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcC
Q 020512 102 EELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYN 181 (325)
Q Consensus 102 ~~l~~~~~~il~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN 181 (325)
..|...|..|+..|.+++.+++|..||++.. +||||++|++||||+||++||++|.|.++.+|.+||+|||.||++||
T Consensus 6 ~~l~~~~~~il~~l~~~~~~~~F~~pvd~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN 83 (112)
T 3d7c_A 6 DQLYTTLKNLLAQIKSHPSAWPFMEPVKKSE--APDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYN 83 (112)
T ss_dssp HHHHHHHHHHHHHHHHSGGGGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCCchhhcCCCCccc--ccCHHHHccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHHC
Confidence 4688899999999999999999999999987 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhC
Q 020512 182 DERSDVHVMAKTLLAKFEEKWLQLL 206 (325)
Q Consensus 182 ~~~s~v~~~A~~L~~~fe~~~~~~~ 206 (325)
+++|.+|.+|..|++.|++.|+++.
T Consensus 84 ~~~s~~~~~A~~L~~~f~~~~~~~~ 108 (112)
T 3d7c_A 84 PPDSEYCRCASALEKFFYFKLKEGG 108 (112)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999999999999999998863
No 3
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.96 E-value=6.7e-30 Score=209.36 Aligned_cols=103 Identities=36% Similarity=0.679 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcCC
Q 020512 103 ELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYND 182 (325)
Q Consensus 103 ~l~~~~~~il~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~ 182 (325)
..++.|..||..|.+++.+|+|..||++.. +||||++|++||||+||++||++|.|.++.+|.+||+|||.||+.||+
T Consensus 13 ~~~~~c~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 90 (117)
T 3g0l_A 13 KDLALCSMILTEMETHEDAWPFLLPVNLKL--VPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNE 90 (117)
T ss_dssp THHHHHHHHHHHHHTSTTCGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCcCChhh--cCChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 357789999999999999999999999988 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhCC
Q 020512 183 ERSDVHVMAKTLLAKFEEKWLQLLP 207 (325)
Q Consensus 183 ~~s~v~~~A~~L~~~fe~~~~~~~~ 207 (325)
++|.+|.+|..|++.|++.|.+++.
T Consensus 91 ~~s~~~~~A~~L~~~f~~~~~~~~~ 115 (117)
T 3g0l_A 91 DDSDIGRAGHNMRKYFEKKWTDTFK 115 (117)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999998753
No 4
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.96 E-value=1.6e-29 Score=210.00 Aligned_cols=105 Identities=38% Similarity=0.644 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcCC
Q 020512 103 ELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYND 182 (325)
Q Consensus 103 ~l~~~~~~il~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~ 182 (325)
.+...|..||..|++++.+|+|..||++..+++||||++|++||||+||++||++|.|.++.+|.+||+|||.||++||+
T Consensus 21 ~l~~~~~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~ 100 (127)
T 2oss_A 21 QLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNK 100 (127)
T ss_dssp HHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhCccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 45567788999999999999999999987556999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhCC
Q 020512 183 ERSDVHVMAKTLLAKFEEKWLQLLP 207 (325)
Q Consensus 183 ~~s~v~~~A~~L~~~fe~~~~~~~~ 207 (325)
++|.||.+|..|++.|++.|.++..
T Consensus 101 ~~s~i~~~A~~L~~~f~~~~~~lp~ 125 (127)
T 2oss_A 101 PGDDIVLMAEALEKLFLQKINELPT 125 (127)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCC
Confidence 9999999999999999999988753
No 5
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.96 E-value=9.7e-30 Score=208.11 Aligned_cols=101 Identities=30% Similarity=0.582 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcC
Q 020512 102 EELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYN 181 (325)
Q Consensus 102 ~~l~~~~~~il~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN 181 (325)
.++.+.|..||..|+.++.+++|..||++.. +||||++|++||||+||++||++|.|.++.+|.+||+|||.||++||
T Consensus 15 ~~~~~~~~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 92 (116)
T 3nxb_A 15 DDDFTAMYKVLDVVKAHKDSWPFLEPVDESY--APNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYN 92 (116)
T ss_dssp CCHHHHHHHHHHHHHHSTTCGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcHhhcCcCChhh--ccChHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 3578899999999999999999999999997 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHh
Q 020512 182 DERSDVHVMAKTLLAKFEEKWLQ 204 (325)
Q Consensus 182 ~~~s~v~~~A~~L~~~fe~~~~~ 204 (325)
+++|.+|.+|..|++.|++.|.+
T Consensus 93 ~~~s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 93 GESSEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999875
No 6
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.96 E-value=3.4e-29 Score=205.25 Aligned_cols=104 Identities=26% Similarity=0.337 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhc
Q 020512 101 MEELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKY 180 (325)
Q Consensus 101 ~~~l~~~~~~il~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~Y 180 (325)
...+.+.|..||+.|++++.+++|..||++.. +||||++|++||||+||++||++|.|.++.+|.+||+|||.||++|
T Consensus 6 ~~~l~~~l~~il~~L~~~~~~~~F~~PVd~~~--~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~y 83 (117)
T 2i7k_A 6 QTPLQEALNQLMRQLQRKDPSAFFSFPVTDFI--APGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIY 83 (117)
T ss_dssp HHHHHHHHHHHHHHHHTSSGGGTSSSCCCTTT--SSSHHHHCSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhCcccHHhcCCCCccc--cCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34677899999999999999999999999876 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhC
Q 020512 181 NDERSDVHVMAKTLLAKFEEKWLQLL 206 (325)
Q Consensus 181 N~~~s~v~~~A~~L~~~fe~~~~~~~ 206 (325)
|+++|.+|.+|..|++.|++.|..+.
T Consensus 84 N~~~s~i~~~A~~L~~~f~~~~~~~~ 109 (117)
T 2i7k_A 84 NKPETIYYKAAKKLLHSGMKILSQER 109 (117)
T ss_dssp SCSSSSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998764
No 7
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.96 E-value=8.7e-30 Score=209.57 Aligned_cols=106 Identities=42% Similarity=0.769 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHHcCCC---CCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchh
Q 020512 102 EELIRQFGTILRNITQHKW---AWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAM 178 (325)
Q Consensus 102 ~~l~~~~~~il~~l~~~~~---s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~ 178 (325)
.+.++.|..||..|..++. +|||..||++..+++||||++|++||||+||++||++|.|.++.+|.+||+|||.||+
T Consensus 8 ~~~l~~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~ 87 (120)
T 3jvl_A 8 SEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSNCY 87 (120)
T ss_dssp CHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 4678899999999999876 9999999999988899999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHhhCC
Q 020512 179 KYNDERSDVHVMAKTLLAKFEEKWLQLLP 207 (325)
Q Consensus 179 ~YN~~~s~v~~~A~~L~~~fe~~~~~~~~ 207 (325)
+||+++|.||.+|..|++.|++.|.++..
T Consensus 88 ~yN~~~s~~~~~A~~L~~~f~~~~~~~p~ 116 (120)
T 3jvl_A 88 KYNPPDHEVVAMARKLQDVFEMRFAKMPD 116 (120)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999998864
No 8
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.96 E-value=1.5e-29 Score=209.07 Aligned_cols=106 Identities=36% Similarity=0.587 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcCC
Q 020512 103 ELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYND 182 (325)
Q Consensus 103 ~l~~~~~~il~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~ 182 (325)
.|.+.|..||+.|++++.+++|..||++.. +||||++|++||||+||++||++|.|.++.+|.+||+|||.||+.||+
T Consensus 10 ~~~~~c~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 87 (123)
T 3q2e_A 10 NWKKQCKELVNLIFQCEDSEPFRQPVDLVE--YPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAYTP 87 (123)
T ss_dssp CHHHHHHHHHHHHHTSGGGGGGSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhCCCcHhhcCCCChhh--cCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 588899999999999999999999999987 999999999999999999999999999999999999999999999999
Q ss_pred C-CCHHHHHHHHHHHHHHHHHHhhCCCCc
Q 020512 183 E-RSDVHVMAKTLLAKFEEKWLQLLPKVT 210 (325)
Q Consensus 183 ~-~s~v~~~A~~L~~~fe~~~~~~~~~~~ 210 (325)
+ +|.||.+|..|++.|+++|..+++.+.
T Consensus 88 ~~~s~i~~~A~~L~~~f~~~~~~~~~~~~ 116 (123)
T 3q2e_A 88 NKRSKIYSMTLRLSALFEEKMKKISSDFK 116 (123)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 999999999999999999999876543
No 9
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.96 E-value=1.1e-29 Score=209.30 Aligned_cols=101 Identities=34% Similarity=0.607 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcCCC
Q 020512 104 LIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDE 183 (325)
Q Consensus 104 l~~~~~~il~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~ 183 (325)
....|..||..|++++.+|+|..||++.. +||||++|++||||+||++||++|.|.|+.+|.+||+|||.||++||++
T Consensus 14 ~~~~~~~il~~l~~~~~a~~F~~pvd~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 91 (121)
T 1e6i_A 14 HDAAIQNILTELQNHAAAWPFLQPVNKEE--VPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGE 91 (121)
T ss_dssp THHHHHHHHHHHHHSTTCGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHcCCCchhhCCCCChhh--CcCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 46789999999999999999999999987 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhC
Q 020512 184 RSDVHVMAKTLLAKFEEKWLQLL 206 (325)
Q Consensus 184 ~s~v~~~A~~L~~~fe~~~~~~~ 206 (325)
+|.+|.+|..|++.|++.|..++
T Consensus 92 ~s~i~~~A~~L~~~f~~~~~~~p 114 (121)
T 1e6i_A 92 NTSYYKYANRLEKFFNNKVKEIP 114 (121)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTSG
T ss_pred CCHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999998873
No 10
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.96 E-value=7.3e-30 Score=214.21 Aligned_cols=106 Identities=38% Similarity=0.598 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcC
Q 020512 102 EELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYN 181 (325)
Q Consensus 102 ~~l~~~~~~il~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN 181 (325)
..+.+.|..||+.|..++.+++|..||++.. +||||++|++||||+||++||++|.|.++.+|.+||+|||.||++||
T Consensus 20 ~~l~~~~~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 97 (135)
T 3mb3_A 20 QAWKKQCEELLNLIFQCEDSEPFRQPVDLLE--YPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYT 97 (135)
T ss_dssp STHHHHHHHHHHHHHHSGGGGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCCCChhhcCCCChhh--CCCHHHHhCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 3688899999999999999999999999977 99999999999999999999999999999999999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHhhCCCC
Q 020512 182 DE-RSDVHVMAKTLLAKFEEKWLQLLPKV 209 (325)
Q Consensus 182 ~~-~s~v~~~A~~L~~~fe~~~~~~~~~~ 209 (325)
++ +|.||.+|..|++.|++.|..+++.+
T Consensus 98 ~~~~s~i~~~A~~L~~~f~~~~~~~~~~~ 126 (135)
T 3mb3_A 98 PSKRSRIYSMSLRLSAFFEEHISSVLSDY 126 (135)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 97 99999999999999999999986543
No 11
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.96 E-value=4.4e-29 Score=206.32 Aligned_cols=103 Identities=28% Similarity=0.437 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHHcCC------CCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHc
Q 020512 103 ELIRQFGTILRNITQHK------WAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKN 176 (325)
Q Consensus 103 ~l~~~~~~il~~l~~~~------~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~N 176 (325)
.+.+.|..|++.|++++ .+++|..||+... +||||++|++||||+||++||++|.|.++.+|.+||+|||.|
T Consensus 13 ~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~N 90 (123)
T 2dat_A 13 KLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKE--LPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHN 90 (123)
T ss_dssp HHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTT--SCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCccc--CCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 57788999999999886 6999999999887 999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHhhCC
Q 020512 177 AMKYNDERSDVHVMAKTLLAKFEEKWLQLLP 207 (325)
Q Consensus 177 a~~YN~~~s~v~~~A~~L~~~fe~~~~~~~~ 207 (325)
|++||+++|.||.+|..|++.|++.++++++
T Consensus 91 a~~yN~~~s~i~~~A~~L~~~f~~~~~~~ps 121 (123)
T 2dat_A 91 AQTFNLEGSQIYEDSIVLQSVFKSARQSGPS 121 (123)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999998754
No 12
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.96 E-value=3.8e-29 Score=205.48 Aligned_cols=105 Identities=33% Similarity=0.569 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHHc-CCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhc
Q 020512 102 EELIRQFGTILRNITQ-HKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKY 180 (325)
Q Consensus 102 ~~l~~~~~~il~~l~~-~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~Y 180 (325)
.++.+.|..+|..|.+ ++.+|||..||++..+++||||++|++||||+||++||++|.|.++.+|.+||+|||.||++|
T Consensus 10 ~el~~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 89 (119)
T 3p1f_A 10 EELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLY 89 (119)
T ss_dssp HHHHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4788899999999988 679999999999985559999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhC
Q 020512 181 NDERSDVHVMAKTLLAKFEEKWLQLL 206 (325)
Q Consensus 181 N~~~s~v~~~A~~L~~~fe~~~~~~~ 206 (325)
|+++|.+|.+|..|++.|++.|..++
T Consensus 90 N~~~s~i~~~A~~L~~~f~~~~~~~~ 115 (119)
T 3p1f_A 90 NRKTSRVYKFCSKLAEVFEQEIDPVM 115 (119)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998874
No 13
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.96 E-value=6.2e-29 Score=208.60 Aligned_cols=104 Identities=32% Similarity=0.536 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhc--CCCCCHHHHHHHHHHHHHchhhcC
Q 020512 104 LIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEA--KEYKNVREICTDVRLVFKNAMKYN 181 (325)
Q Consensus 104 l~~~~~~il~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~--~~Y~s~~ef~~Dv~Lif~Na~~YN 181 (325)
..+.|..||..|++++.+|+|..||+. . +||||++|++||||+||++||++ +.|.++.+|.+||+|||.||++||
T Consensus 21 ~~~~c~~il~~L~~~~~s~~F~~Pv~~-~--~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif~Na~~yN 97 (135)
T 2yyn_A 21 DKRKCERLLLFLYCHEMSLAFQDPVPL-T--VPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFN 97 (135)
T ss_dssp HHHHHHHHHHHHHTSGGGGGGSSCCCT-T--STTHHHHCSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhCccchhhcCCCcc-c--CCCHHHHcCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHC
Confidence 457899999999999999999999997 3 99999999999999999999998 589999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhCCCCc
Q 020512 182 DERSDVHVMAKTLLAKFEEKWLQLLPKVT 210 (325)
Q Consensus 182 ~~~s~v~~~A~~L~~~fe~~~~~~~~~~~ 210 (325)
+++|.||.+|..|++.|++.|.+++|...
T Consensus 98 ~~~s~i~~~A~~L~~~f~~~~~~~~~~~~ 126 (135)
T 2yyn_A 98 EPDSEVANAGIKLENYFEELLKNLYPEKR 126 (135)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccccC
Confidence 99999999999999999999999988754
No 14
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.96 E-value=4.5e-29 Score=213.90 Aligned_cols=107 Identities=35% Similarity=0.592 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcCC
Q 020512 103 ELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYND 182 (325)
Q Consensus 103 ~l~~~~~~il~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~ 182 (325)
.+...|..||+.|++++.+|+|..||++..+++||||++|++||||+||++||+++.|.++.+|.+||+|||.||++||+
T Consensus 32 ~l~~~~~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~YN~ 111 (154)
T 4alg_A 32 QLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNK 111 (154)
T ss_dssp HHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 45557788999999999999999999999777999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhCCCC
Q 020512 183 ERSDVHVMAKTLLAKFEEKWLQLLPKV 209 (325)
Q Consensus 183 ~~s~v~~~A~~L~~~fe~~~~~~~~~~ 209 (325)
++|.||.+|..|++.|++.|..+.+..
T Consensus 112 ~~s~i~~~A~~L~~~f~~~~~~l~~~~ 138 (154)
T 4alg_A 112 PTDDIVLMAQTLEKIFLQKVASMPQEE 138 (154)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTTSCSSC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCchh
Confidence 999999999999999999999986543
No 15
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.96 E-value=6.4e-29 Score=204.77 Aligned_cols=101 Identities=27% Similarity=0.376 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcCC
Q 020512 103 ELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYND 182 (325)
Q Consensus 103 ~l~~~~~~il~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~ 182 (325)
.+...|..||+.|++++.+++|..||++.. +||||++|++||||+||++||++|.|.++.+|.+||+|||.||++||+
T Consensus 7 pl~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~ 84 (121)
T 2d9e_A 7 GFLILLRKTLEQLQEKDTGNIFSEPVPLSE--VPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNA 84 (121)
T ss_dssp HHHHHHHHHHHHHHHHCSSCSSSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHcCCccHhhCCcCCccc--cCCHHHHcCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 456789999999999999999999999987 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhh
Q 020512 183 ERSDVHVMAKTLLAKFEEKWLQL 205 (325)
Q Consensus 183 ~~s~v~~~A~~L~~~fe~~~~~~ 205 (325)
++|.+|.+|..|++.|+..|.++
T Consensus 85 ~~s~~~~~A~~L~~~~~~~l~~~ 107 (121)
T 2d9e_A 85 KDTIFYRAAVRLREQGGAVLRQA 107 (121)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999876
No 16
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.96 E-value=5e-29 Score=216.07 Aligned_cols=105 Identities=27% Similarity=0.436 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcC
Q 020512 102 EELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYN 181 (325)
Q Consensus 102 ~~l~~~~~~il~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN 181 (325)
..+.+.|..||..|++++.+++|..||++..+++||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||
T Consensus 20 ~~~~~~~~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN 99 (166)
T 3fkm_X 20 KQWYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNCSLYN 99 (166)
T ss_dssp HHHHHHHHHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHhCCCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 36888999999999999999999999998866799999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhC
Q 020512 182 DERSDVHVMAKTLLAKFEEKWLQLL 206 (325)
Q Consensus 182 ~~~s~v~~~A~~L~~~fe~~~~~~~ 206 (325)
+++|.||.+|..|++.|++.|..+.
T Consensus 100 ~~~s~i~~~A~~L~~~f~~~l~~~~ 124 (166)
T 3fkm_X 100 TSNSVVAITGKNIETYFNNQLIVMG 124 (166)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999998873
No 17
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.95 E-value=1.3e-28 Score=205.02 Aligned_cols=102 Identities=27% Similarity=0.434 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHcCC-------CCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 020512 103 ELIRQFGTILRNITQHK-------WAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFK 175 (325)
Q Consensus 103 ~l~~~~~~il~~l~~~~-------~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~ 175 (325)
.+.+.|..||+.|++++ .+++|..||+... +||||++|++||||+||++||.+|.|.++.+|.+||+|||.
T Consensus 11 ~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~ 88 (129)
T 2grc_A 11 NLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKE--LPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQ 88 (129)
T ss_dssp HHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCccc--CCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 67889999999999875 5899999999887 99999999999999999999999999999999999999999
Q ss_pred chhhcCCCCCHHHHHHHHHHHHHHHHHHhhC
Q 020512 176 NAMKYNDERSDVHVMAKTLLAKFEEKWLQLL 206 (325)
Q Consensus 176 Na~~YN~~~s~v~~~A~~L~~~fe~~~~~~~ 206 (325)
||++||+++|.||.+|..|++.|++.|..+.
T Consensus 89 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~ 119 (129)
T 2grc_A 89 NAQTFNLEGSLIYEDSIVLQSVFTSVRQKIE 119 (129)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999884
No 18
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.95 E-value=1.7e-28 Score=203.04 Aligned_cols=102 Identities=25% Similarity=0.408 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHc------CCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHc
Q 020512 103 ELIRQFGTILRNITQ------HKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKN 176 (325)
Q Consensus 103 ~l~~~~~~il~~l~~------~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~N 176 (325)
.+.+.|..|++.|.. ++.+++|..||+... +||||++|++||||+||++||++|.|.++.+|.+||+|||.|
T Consensus 15 ~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~N 92 (124)
T 3mb4_A 15 PMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSE--LPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNN 92 (124)
T ss_dssp HHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCccc--cCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 467788899999987 567899999999987 999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHhhC
Q 020512 177 AMKYNDERSDVHVMAKTLLAKFEEKWLQLL 206 (325)
Q Consensus 177 a~~YN~~~s~v~~~A~~L~~~fe~~~~~~~ 206 (325)
|++||+++|.||.+|..|++.|++.|+++.
T Consensus 93 a~~yN~~~s~i~~~A~~L~~~f~~~~~~l~ 122 (124)
T 3mb4_A 93 ACTYNEPESLIYKDALVLHKVLLETRRDLE 122 (124)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999874
No 19
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.95 E-value=1.1e-28 Score=204.76 Aligned_cols=106 Identities=30% Similarity=0.359 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHHcCC------CCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 020512 101 MEELIRQFGTILRNITQHK------WAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVF 174 (325)
Q Consensus 101 ~~~l~~~~~~il~~l~~~~------~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif 174 (325)
...+.+.|..|++.|..+. .+|||..||+... +||||++|++||||+||++||++|.|.++.+|.+||+|||
T Consensus 7 ~~~l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 84 (126)
T 3mqm_A 7 AARLAQIFKEICDGIISYKDSSRQALAAPLLNLPPKKK--NADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVF 84 (126)
T ss_dssp HHHHHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGGG--CTTHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCccc--CCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3456778888888888764 5999999999987 9999999999999999999999999999999999999999
Q ss_pred HchhhcCCCCCHHHHHHHHHHHHHHHHHHhhCCC
Q 020512 175 KNAMKYNDERSDVHVMAKTLLAKFEEKWLQLLPK 208 (325)
Q Consensus 175 ~Na~~YN~~~s~v~~~A~~L~~~fe~~~~~~~~~ 208 (325)
.||++||+++|.+|.+|..|++.|++.|.++.+.
T Consensus 85 ~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~~ 118 (126)
T 3mqm_A 85 RNAEKYYGRKSPVGRDVCRLRKAYYNARHEASAQ 118 (126)
T ss_dssp HHHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999887543
No 20
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.95 E-value=1.7e-28 Score=205.91 Aligned_cols=103 Identities=32% Similarity=0.461 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhc
Q 020512 101 MEELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKY 180 (325)
Q Consensus 101 ~~~l~~~~~~il~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~Y 180 (325)
+..+...|..||+.|++++.+|+|..||++.. +||||++|++||||+||++||++|.|.++.+|.+||+|||.||++|
T Consensus 11 ~~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 88 (135)
T 3rcw_A 11 LTPLTVLLRSVLDQLQDKDPARIFAQPVSLKE--VPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKY 88 (135)
T ss_dssp CCHHHHHHHHHHHHHHHTCTTCSSSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCcchhhcCCCChhh--cCCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34578899999999999999999999999987 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhh
Q 020512 181 NDERSDVHVMAKTLLAKFEEKWLQL 205 (325)
Q Consensus 181 N~~~s~v~~~A~~L~~~fe~~~~~~ 205 (325)
|+++|.+|.+|..|++.|++.|...
T Consensus 89 N~~~s~~~~~A~~L~~~~~~~~~~~ 113 (135)
T 3rcw_A 89 NARDTVFYRAAVRLRDQGGVVLRQA 113 (135)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999876
No 21
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.95 E-value=1.5e-28 Score=203.09 Aligned_cols=100 Identities=29% Similarity=0.369 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcCC
Q 020512 103 ELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYND 182 (325)
Q Consensus 103 ~l~~~~~~il~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~ 182 (325)
.+...|..|+..|..++.+++|..||++.. +||||++|++||||+||++||++|.|.++.+|.+||+|||.||++||+
T Consensus 13 p~~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 90 (123)
T 3hme_A 13 PIQQLLEHFLRQLQRKDPHGFFAFPVTDAI--APGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNR 90 (123)
T ss_dssp HHHHHHHHHHHHHHTTCTTCSSSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhCCccHhhcCCCChhh--ccCHHHHCCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 467789999999999999999999999987 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHh
Q 020512 183 ERSDVHVMAKTLLAKFEEKWLQ 204 (325)
Q Consensus 183 ~~s~v~~~A~~L~~~fe~~~~~ 204 (325)
++|.+|.+|..|.+.|.+.|.+
T Consensus 91 ~~s~~~~~A~~L~~~~~~~~~~ 112 (123)
T 3hme_A 91 PDTVYYKLAKKILHAGFKMMSK 112 (123)
T ss_dssp TTSHHHHHHHHHHHHHHHHTCH
T ss_pred CCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998754
No 22
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.95 E-value=3.6e-28 Score=202.64 Aligned_cols=102 Identities=25% Similarity=0.400 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHHcCC------CCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 020512 102 EELIRQFGTILRNITQHK------WAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFK 175 (325)
Q Consensus 102 ~~l~~~~~~il~~l~~~~------~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~ 175 (325)
.++..+|..+++.|.... .++||..||+... +||||++|++||||+||++||++|.|.++.+|.+||+|||.
T Consensus 16 ~kl~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~~--~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~ 93 (130)
T 3k2j_A 16 ENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKK--YPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFE 93 (130)
T ss_dssp HHHHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCccHhhcCCCChhh--CccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 467888888888888764 4999999999887 99999999999999999999999999999999999999999
Q ss_pred chhhcCCCCCHHHHHHHHHHHHHHHHHHhh
Q 020512 176 NAMKYNDERSDVHVMAKTLLAKFEEKWLQL 205 (325)
Q Consensus 176 Na~~YN~~~s~v~~~A~~L~~~fe~~~~~~ 205 (325)
||++||+++|.||.+|..|++.|++.|+++
T Consensus 94 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l 123 (130)
T 3k2j_A 94 NAKRYNVPNSAIYKRVLKLQQVMQAKKKEL 123 (130)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999987
No 23
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.95 E-value=2.3e-28 Score=199.95 Aligned_cols=103 Identities=22% Similarity=0.373 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHHcC------CCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHc
Q 020512 103 ELIRQFGTILRNITQH------KWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKN 176 (325)
Q Consensus 103 ~l~~~~~~il~~l~~~------~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~N 176 (325)
+.++.|..|+..|.++ +.+++|..||+... +||||++|++||||+||++||++|.|.++.+|.+||+|||.|
T Consensus 5 ~~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~N 82 (116)
T 3iu5_A 5 DPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRN--QPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNN 82 (116)
T ss_dssp CHHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGGG--CHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCCeeeHHhcCCCCccc--CCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 3567899999999987 45999999999887 999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHhhCC
Q 020512 177 AMKYNDERSDVHVMAKTLLAKFEEKWLQLLP 207 (325)
Q Consensus 177 a~~YN~~~s~v~~~A~~L~~~fe~~~~~~~~ 207 (325)
|++||+++|.+|.+|..|++.|++.+.++..
T Consensus 83 a~~yN~~~s~~~~~A~~L~~~f~~~~~~l~~ 113 (116)
T 3iu5_A 83 AKSYYKPDSPEYKAACKLWDLYLRTRNEFVQ 113 (116)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998754
No 24
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.95 E-value=4.6e-28 Score=199.33 Aligned_cols=101 Identities=26% Similarity=0.384 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHcCCC------CCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHc
Q 020512 103 ELIRQFGTILRNITQHKW------AWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKN 176 (325)
Q Consensus 103 ~l~~~~~~il~~l~~~~~------s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~N 176 (325)
.+...|..++..|..+.. +++|..||+... +||||++|++||||+||++||.+|.|.++.+|.+||+|||.|
T Consensus 8 ~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~N 85 (120)
T 3ljw_A 8 YLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQ--YPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKN 85 (120)
T ss_dssp HHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCccc--CCChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHH
Confidence 566788888998887765 999999999988 999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHhh
Q 020512 177 AMKYNDERSDVHVMAKTLLAKFEEKWLQL 205 (325)
Q Consensus 177 a~~YN~~~s~v~~~A~~L~~~fe~~~~~~ 205 (325)
|++||+++|.||.+|..|++.|++.|.++
T Consensus 86 a~~yN~~~s~~~~~A~~L~~~f~~~~~~i 114 (120)
T 3ljw_A 86 AKTYNEPGSQVFKDANSIKKIFYMKKAEI 114 (120)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999987
No 25
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.94 E-value=1.7e-27 Score=203.20 Aligned_cols=104 Identities=27% Similarity=0.440 Sum_probs=91.4
Q ss_pred HHHHHHHHHHc-------CCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhh
Q 020512 107 QFGTILRNITQ-------HKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMK 179 (325)
Q Consensus 107 ~~~~il~~l~~-------~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~ 179 (325)
+|..|+..|.+ +..+++|..||+... +||||++|++||||+||++||++|.|.++.+|.+||+|||.||++
T Consensus 28 ~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 105 (150)
T 3tlp_A 28 RMKILFNVVLEAREPGSGRRLCDLFMVKPSKKD--YPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARH 105 (150)
T ss_dssp HHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCcccHHhcCCCchhh--CcCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 44455555544 445999999999987 999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhhCCCCchH
Q 020512 180 YNDERSDVHVMAKTLLAKFEEKWLQLLPKVTEE 212 (325)
Q Consensus 180 YN~~~s~v~~~A~~L~~~fe~~~~~~~~~~~~~ 212 (325)
||+++|.||.+|..|++.|++.|.++.+....+
T Consensus 106 yN~~~s~i~~~A~~L~~~f~~~~~~l~~~pd~d 138 (150)
T 3tlp_A 106 YNEEGSQVYNDAHILEKLLKEKRKELGPLPDDD 138 (150)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHHCCC----
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHccCCCChh
Confidence 999999999999999999999999998776543
No 26
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.94 E-value=2.3e-27 Score=203.96 Aligned_cols=103 Identities=27% Similarity=0.477 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHH-HHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcC
Q 020512 103 ELIRQFGTILRN-ITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYN 181 (325)
Q Consensus 103 ~l~~~~~~il~~-l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN 181 (325)
.+...|..|+.. |+.++.+|||..||++.. +||||++|++||||+||++||++|.|.++.+|.+||+|||.||++||
T Consensus 29 ~l~~iL~~i~~~kl~~~~~s~~F~~PVd~~~--~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~yN 106 (158)
T 3uv4_A 29 AFSFILDNIVTQKMMAVPDSWPFHHPVNKKF--VPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYN 106 (158)
T ss_dssp HHHHHHHHHHHHTTTTSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCchhhcCcCChhh--cccHHHHcCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 344455565554 677899999999999987 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhCC
Q 020512 182 DERSDVHVMAKTLLAKFEEKWLQLLP 207 (325)
Q Consensus 182 ~~~s~v~~~A~~L~~~fe~~~~~~~~ 207 (325)
+++|.||.+|..|.+.|.+.|.++..
T Consensus 107 ~~~s~i~~~A~~L~~~~~~~l~e~~~ 132 (158)
T 3uv4_A 107 GPESQYTKTAQEIVNVCYQTLTEYDE 132 (158)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHTHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998743
No 27
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.94 E-value=5.4e-27 Score=204.50 Aligned_cols=102 Identities=31% Similarity=0.578 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcCC
Q 020512 103 ELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYND 182 (325)
Q Consensus 103 ~l~~~~~~il~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~ 182 (325)
.....|..||..|..++.+++|..||++.. +||||++|++||||+||++||++|.|.++.+|.+||+|||.||++||+
T Consensus 72 ~~~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~ 149 (174)
T 2ri7_A 72 KDYEGLKRVLRSLQAHKMAWPFLEPVDPND--APDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNP 149 (174)
T ss_dssp HHHHHHHHHHHHHHTSGGGTTTSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhcCCCccc--CCchHHHhCCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 356688999999999999999999999987 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhC
Q 020512 183 ERSDVHVMAKTLLAKFEEKWLQLL 206 (325)
Q Consensus 183 ~~s~v~~~A~~L~~~fe~~~~~~~ 206 (325)
++|.+|.+|..|++.|+++|+.+.
T Consensus 150 ~~s~~~~~A~~L~~~f~~~~~~~~ 173 (174)
T 2ri7_A 150 SDSPFYQCAEVLESFFVQKLKGFK 173 (174)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999987763
No 28
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.94 E-value=1.9e-26 Score=192.23 Aligned_cols=103 Identities=25% Similarity=0.386 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhh
Q 020512 100 RMEELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMK 179 (325)
Q Consensus 100 ~~~~l~~~~~~il~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~ 179 (325)
.+..+...|..++..|..++.++||..||++.. +||||++|++||||+||++||++|.|.++.+|.+||+|||.||++
T Consensus 7 ~l~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~ 84 (130)
T 3dai_A 7 TFRELRIFLRNVTHRLAIDKRFRVFTKPVDPDE--VPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALE 84 (130)
T ss_dssp HHHHHHHHHHHHHHHHHTSGGGGGGSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCccHhhcCCCChhh--cCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 445677889999999999999999999999997 999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHH----HHHHHHHHHHHHHHHHh
Q 020512 180 YNDERSDV----HVMAKTLLAKFEEKWLQ 204 (325)
Q Consensus 180 YN~~~s~v----~~~A~~L~~~fe~~~~~ 204 (325)
||+++|++ +.+|..|++.+...+..
T Consensus 85 yN~~~s~~~~~i~~~A~~L~~~~~~~i~~ 113 (130)
T 3dai_A 85 YNPDRDPGDRLIRHRACALRDTAYAIIKE 113 (130)
T ss_dssp HCCSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999977 78888888888888863
No 29
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.94 E-value=1.6e-26 Score=203.35 Aligned_cols=102 Identities=32% Similarity=0.544 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhc--CCCCCHHHHHHHHHHHHHchhhc
Q 020512 103 ELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEA--KEYKNVREICTDVRLVFKNAMKY 180 (325)
Q Consensus 103 ~l~~~~~~il~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~--~~Y~s~~ef~~Dv~Lif~Na~~Y 180 (325)
.+.+.|..||..|+.++.+++|..||+.. +||||++|++||||+||++||++ |.|.++.+|.+||+|||.||++|
T Consensus 81 ~~~~~c~~il~~l~~~~~s~~F~~Pv~~~---~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li~~Na~~y 157 (184)
T 3o36_A 81 IDKRKCERLLLFLYCHEMSLAFQDPVPLT---VPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEF 157 (184)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHSCCCTT---STTHHHHCSSCCCHHHHHHHHHSTTCSCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhchhhhhhccccccC---CCchhhhcCCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46778999999999999999999999964 89999999999999999999998 78999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhCC
Q 020512 181 NDERSDVHVMAKTLLAKFEEKWLQLLP 207 (325)
Q Consensus 181 N~~~s~v~~~A~~L~~~fe~~~~~~~~ 207 (325)
|+++|.||.+|..|++.|++.|++++|
T Consensus 158 N~~~s~v~~~a~~L~~~f~~~~~~~~P 184 (184)
T 3o36_A 158 NEPDSEVANAGIKLENYFEELLKNLYP 184 (184)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999886
No 30
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.92 E-value=3.9e-25 Score=205.12 Aligned_cols=103 Identities=24% Similarity=0.510 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcCC
Q 020512 103 ELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYND 182 (325)
Q Consensus 103 ~l~~~~~~il~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~ 182 (325)
.|...|..||..|.+++.+|||..||++.. +||||++|++||||+||++||++|.|.++.+|.+||+|||.||++||+
T Consensus 14 ~l~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 91 (265)
T 3uv5_A 14 TLSSILESIINDMRDLPNTYPFHTPVNAKV--VKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNG 91 (265)
T ss_dssp HHHHHHHHHHHHHHTSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCchhhhCCCChhh--cCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhhcCC
Confidence 678899999999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhCC
Q 020512 183 ERSDVHVMAKTLLAKFEEKWLQLLP 207 (325)
Q Consensus 183 ~~s~v~~~A~~L~~~fe~~~~~~~~ 207 (325)
++|.||.+|..|.+.|++.|.++.+
T Consensus 92 ~~s~i~~~A~~l~~~~~~~~~~~~~ 116 (265)
T 3uv5_A 92 PKHSLTQISQSMLDLCDEKLKEKED 116 (265)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999988743
No 31
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.92 E-value=3.5e-25 Score=198.38 Aligned_cols=104 Identities=31% Similarity=0.559 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhc---CCCCCHHHHHHHHHHHHHchhh
Q 020512 103 ELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEA---KEYKNVREICTDVRLVFKNAMK 179 (325)
Q Consensus 103 ~l~~~~~~il~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~---~~Y~s~~ef~~Dv~Lif~Na~~ 179 (325)
...+.|..||..|+.++.+++|..||+. . +||||++|++||||+||++||++ |.|.++.+|.+||+|||.||++
T Consensus 81 ~~~~~c~~il~~l~~~~~s~~F~~Pv~~-~--~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~li~~Na~~ 157 (207)
T 3u5n_A 81 VDQRKCERLLLYLYCHELSIEFQEPVPA-S--IPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNCER 157 (207)
T ss_dssp HHHHHHHHHHHHHHTSTTCGGGSSCCCT-T--STTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchhhhhccCCh-h--hccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999987 3 99999999999999999999997 7999999999999999999999
Q ss_pred cCC-----------------CCCHHHHHHHHHHHHHHHHHHhhCCCC
Q 020512 180 YND-----------------ERSDVHVMAKTLLAKFEEKWLQLLPKV 209 (325)
Q Consensus 180 YN~-----------------~~s~v~~~A~~L~~~fe~~~~~~~~~~ 209 (325)
||+ ++|.|+.+|..|+.+|+++|++++|..
T Consensus 158 yN~~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~~p~~ 204 (207)
T 3u5n_A 158 FNEMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEIYSDR 204 (207)
T ss_dssp HHHHHHHHC----------CCCCHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HCCCcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999 999999999999999999999999864
No 32
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.92 E-value=5.9e-25 Score=183.38 Aligned_cols=99 Identities=25% Similarity=0.425 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhh
Q 020512 100 RMEELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMK 179 (325)
Q Consensus 100 ~~~~l~~~~~~il~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~ 179 (325)
.+.+|...|..|+..|..++.++||..| +||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++
T Consensus 9 ~~~~L~~~~~~il~~l~~~~~~~~F~~P-------~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~ 81 (131)
T 2dkw_A 9 TLRELRLFLRDVTKRLATDKRFNIFSKP-------VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALE 81 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHSGGGCTTSSC-------CSSCTTSCSSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccchhhcCc-------CccHHhHcCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3456778899999999999999999998 799999999999999999999999999999999999999999999
Q ss_pred cCCCCCH----HHHHHHHHHHHHHHHHHhh
Q 020512 180 YNDERSD----VHVMAKTLLAKFEEKWLQL 205 (325)
Q Consensus 180 YN~~~s~----v~~~A~~L~~~fe~~~~~~ 205 (325)
||+++|+ |+.+|..|++.|...+..-
T Consensus 82 yN~~~s~~~~~i~~~A~~L~~~~~~~l~~~ 111 (131)
T 2dkw_A 82 YNPDKDPGDKIIRHRACTLKDTAHAIIAAE 111 (131)
T ss_dssp SCCCSSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999996 5789999999999988544
No 33
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.92 E-value=1.9e-25 Score=197.38 Aligned_cols=99 Identities=20% Similarity=0.251 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCccCcCCCCCCCCCchhhhcc--CCCChHHHHHHHhcC---CCCCHHHHHHHHHHHHHchh
Q 020512 104 LIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVID--KPMDFSTIKKQMEAK---EYKNVREICTDVRLVFKNAM 178 (325)
Q Consensus 104 l~~~~~~il~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk--~PMDL~tIk~kL~~~---~Y~s~~ef~~Dv~Lif~Na~ 178 (325)
.++.|..||..|+.|+.+|||+.||+ |+||++|+ +||||+||++||++| .|.++++|.+||+|||+||+
T Consensus 77 ~~~~c~~iL~~l~~~~~s~pF~~pV~------~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~Lif~N~~ 150 (189)
T 2ro1_A 77 NQRKCERVLLALFCHEPCRPLHQLAT------DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRMFKQFN 150 (189)
T ss_dssp HHHHHHHHHHHHHHSTTHHHHHSCSC------CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCccchhhcCCCC------hhhhccccCCCcccHHHHHHHHhcCCCcccCCHHHHHHHHHHHHHHHH
Confidence 34689999999999999999999997 67999998 899999999999999 99999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHhhCCCC
Q 020512 179 KYNDERSDVHVMAKTLLAKFEEKWLQLLPKV 209 (325)
Q Consensus 179 ~YN~~~s~v~~~A~~L~~~fe~~~~~~~~~~ 209 (325)
+|| +++.+|.+|..|+++|+++|+++++..
T Consensus 151 ~yN-~~s~~~~~a~~L~~~Fe~~~~~~~~~~ 180 (189)
T 2ro1_A 151 KLT-EDKADVQSIIGLQRFFETRMNEAFGDT 180 (189)
T ss_dssp HHC-CSSCSSHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHC-CCCHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 999 588999999999999999999998754
No 34
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.91 E-value=2.2e-24 Score=200.11 Aligned_cols=99 Identities=28% Similarity=0.497 Sum_probs=92.0
Q ss_pred HHHHHHHH-HHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcCCCC
Q 020512 106 RQFGTILR-NITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDER 184 (325)
Q Consensus 106 ~~~~~il~-~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~ 184 (325)
..|..++. .++.++.+|||..||++.. +||||++|++||||+||++||++|.|.++.+|.+||+|||.||++||+++
T Consensus 139 ~il~~i~~~~l~~~~~~~~F~~pv~~~~--~pdY~~iIk~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~lif~Na~~yN~~~ 216 (265)
T 3uv5_A 139 FILDNIVTQKMMAVPDSWPFHHPVNKKF--VPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPE 216 (265)
T ss_dssp HHHHHHHHHTTTTSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHhhhhhHHHhCCCChhH--hCcHHHHhCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 34555554 3778899999999999998 99999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhhC
Q 020512 185 SDVHVMAKTLLAKFEEKWLQLL 206 (325)
Q Consensus 185 s~v~~~A~~L~~~fe~~~~~~~ 206 (325)
|.||.+|..|.+.|.+.|..+.
T Consensus 217 s~~~~~A~~l~~~~~~~~~~~~ 238 (265)
T 3uv5_A 217 SQYTKTAQEIVNVCYQTLTEYD 238 (265)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999884
No 35
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.91 E-value=1.1e-24 Score=204.62 Aligned_cols=102 Identities=25% Similarity=0.520 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcC
Q 020512 102 EELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYN 181 (325)
Q Consensus 102 ~~l~~~~~~il~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN 181 (325)
..+...|..||+.|+.++.+|+|..||++.. +||||++|++||||+||++||++|.|.++.+|.+||+|||.||++||
T Consensus 46 ~~l~~~~~~il~~l~~~~~a~~F~~pV~~~~--~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~Na~~yN 123 (292)
T 3aad_A 46 VTLSSILESIINDMRDLPNTYPFHTPVNAKV--VKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYN 123 (292)
T ss_dssp HHHHHHHHHHHHHHSSSTTCGGGSSSCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCcchhhcCCCCchh--cccHHHHcCCcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHHHc
Confidence 3566789999999999999999999999987 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhh
Q 020512 182 DERSDVHVMAKTLLAKFEEKWLQL 205 (325)
Q Consensus 182 ~~~s~v~~~A~~L~~~fe~~~~~~ 205 (325)
+++|.+|.+|..|.+.|++.|..+
T Consensus 124 ~~~s~i~~~A~~L~~~~~~~~~~~ 147 (292)
T 3aad_A 124 GPKHSLTQISQSMLDLCDEKLKEK 147 (292)
T ss_dssp CSSSHHHHHHTHHHHTTTTTGGGS
T ss_pred CCchHHHHHHHHHHHHHHhhhhcc
Confidence 999999999999999999888664
No 36
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.89 E-value=1.5e-23 Score=196.99 Aligned_cols=98 Identities=29% Similarity=0.519 Sum_probs=90.6
Q ss_pred HHHHHH-HHHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcCCCCC
Q 020512 107 QFGTIL-RNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERS 185 (325)
Q Consensus 107 ~~~~il-~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s 185 (325)
.+..++ ..|+.++.+|+|..||++.. +||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||+++|
T Consensus 173 ~l~~i~~~~l~~~~~s~~F~~pvd~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s 250 (292)
T 3aad_A 173 ILDNIVTQKMMAVPDSWPFHHPVNKKF--VPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPES 250 (292)
T ss_dssp HHHHHHHHTGGGSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHhhhhhhcCcchhHHHhcccccc--cccHHHHcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 344444 34788999999999999887 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhC
Q 020512 186 DVHVMAKTLLAKFEEKWLQLL 206 (325)
Q Consensus 186 ~v~~~A~~L~~~fe~~~~~~~ 206 (325)
.||.+|..|++.|++.|..+.
T Consensus 251 ~i~~~A~~L~~~~~~~~~~~~ 271 (292)
T 3aad_A 251 QYTKTAQEIVNVCYQTLTEYD 271 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998873
No 37
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.89 E-value=6.9e-24 Score=200.75 Aligned_cols=87 Identities=32% Similarity=0.498 Sum_probs=84.0
Q ss_pred cCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcCCCCCHHHHHHHHHHH
Q 020512 117 QHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVHVMAKTLLA 196 (325)
Q Consensus 117 ~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~v~~~A~~L~~ 196 (325)
.|+.+|+|+.||++.. +||||++|++||||+||++||++|.|.++.+|.+||+|||.||++||+++|.||.+|..|++
T Consensus 177 ~~~~s~~F~~pvd~~~--~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~ 254 (311)
T 2r0y_A 177 KVKLSEPFMELVDKDE--LPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTN 254 (311)
T ss_dssp SSCTTGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHH
T ss_pred CCccHHHHhCCCChhh--cccHHHHhCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 3678999999999987 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 020512 197 KFEEKWLQL 205 (325)
Q Consensus 197 ~fe~~~~~~ 205 (325)
.|++.|.+.
T Consensus 255 ~f~~~~~~~ 263 (311)
T 2r0y_A 255 YFNYLIQKE 263 (311)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999999874
No 38
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.88 E-value=3.4e-23 Score=199.84 Aligned_cols=87 Identities=32% Similarity=0.498 Sum_probs=83.9
Q ss_pred cCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcCCCCCHHHHHHHHHHH
Q 020512 117 QHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVHVMAKTLLA 196 (325)
Q Consensus 117 ~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~v~~~A~~L~~ 196 (325)
.|+.+|+|+.||++.. +||||+||++||||+||++||++|.|.++.+|.+||+|||.||++||+++|.||.+|..|++
T Consensus 227 ~~~~s~~F~~pvd~~~--~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~ 304 (361)
T 2r10_A 227 KVKLSEPFMELVDKDE--LPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTN 304 (361)
T ss_dssp SSCTTGGGSSCCCTTT--CTHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHH
T ss_pred CCcchhcccCCCChhh--cccHHHHhcCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3578999999999987 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 020512 197 KFEEKWLQL 205 (325)
Q Consensus 197 ~fe~~~~~~ 205 (325)
.|+..|.+.
T Consensus 305 ~f~~~~~~~ 313 (361)
T 2r10_A 305 YFNYLIQKE 313 (361)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999999874
No 39
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.84 E-value=2.9e-22 Score=193.41 Aligned_cols=98 Identities=23% Similarity=0.252 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHcC--CCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCC-CHHHHHHHHHHHHHchhhc
Q 020512 104 LIRQFGTILRNITQH--KWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYK-NVREICTDVRLVFKNAMKY 180 (325)
Q Consensus 104 l~~~~~~il~~l~~~--~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~-s~~ef~~Dv~Lif~Na~~Y 180 (325)
+...|..+|+.+... ..+++|+.||+... +||||+||++||||+||++|| +.|. ++.+|.+||+|||.||++|
T Consensus 79 ~~~~~~~~l~~l~~~~~~~~~~F~~p~~~~~--~PdY~~iIk~Pmdl~tI~~kl--~~y~~~~~~f~~D~~li~~Na~~y 154 (361)
T 2r10_A 79 FNRFISFTLDVLIDKYKDIFKDFIKLPSRKF--HPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAY 154 (361)
T ss_dssp HHHHHHHHHHHHHHHTHHHHGGGSSCCCTTT--CTTHHHHCSSCCCHHHHHTSC--CCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcccHHhcCCCCccc--CCChHhhcCCCcCHHHHHHHh--hccCCCHHHHHHHHHHHHHHHhhc
Confidence 344677788887553 46899999999988 999999999999999999998 5555 8999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhh
Q 020512 181 NDERSDVHVMAKTLLAKFEEKWLQL 205 (325)
Q Consensus 181 N~~~s~v~~~A~~L~~~fe~~~~~~ 205 (325)
|+++|.||.+|..|+++|++.|.+.
T Consensus 155 N~~~s~i~~~a~~l~~~~~~~~~k~ 179 (361)
T 2r10_A 155 NEYDSLIVKNSMQVVMLIEFEVLKA 179 (361)
T ss_dssp BCSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999865
No 40
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.83 E-value=2.8e-21 Score=182.87 Aligned_cols=94 Identities=23% Similarity=0.258 Sum_probs=82.6
Q ss_pred HHHHHHHHHc--CCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCC-CHHHHHHHHHHHHHchhhcCCCC
Q 020512 108 FGTILRNITQ--HKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYK-NVREICTDVRLVFKNAMKYNDER 184 (325)
Q Consensus 108 ~~~il~~l~~--~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~-s~~ef~~Dv~Lif~Na~~YN~~~ 184 (325)
|..+|..+.. +..+++|+.||+... +||||+||++||||+||++|| +.|. ++.+|.+||+|||.||++||+++
T Consensus 33 ~~~~L~~~~~~~r~~~~~F~~p~~~~~--~PdY~~iIk~PmDL~tI~~kl--~~y~~s~~~f~~D~~li~~Na~~yN~~~ 108 (311)
T 2r0y_A 33 ISFTLDVLIDKYKDIFKDFIKLPSRKF--HPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAYNEYD 108 (311)
T ss_dssp HHHHHHHHHHHSHHHHGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHSC--CCSTTHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHcCCchhHHhcCCCCccc--CCChHHHcCCCCCHHHHHHHH--hcccCCHHHHHHHHHHHHHHHHHccCCC
Confidence 3344444433 347899999999988 999999999999999999999 5565 89999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhh
Q 020512 185 SDVHVMAKTLLAKFEEKWLQL 205 (325)
Q Consensus 185 s~v~~~A~~L~~~fe~~~~~~ 205 (325)
|.||.+|..|++.|.+.|.+.
T Consensus 109 s~i~~~A~~l~~~~~~~~~k~ 129 (311)
T 2r0y_A 109 SLIVKNSMQVVMLIEFEVLKA 129 (311)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999875
No 41
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.80 E-value=3.1e-19 Score=150.18 Aligned_cols=97 Identities=16% Similarity=0.257 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHcCC------CCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHch
Q 020512 104 LIRQFGTILRNITQHK------WAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNA 177 (325)
Q Consensus 104 l~~~~~~il~~l~~~~------~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na 177 (325)
+...+..|++.++++. .+.+|...|+.. |+||. ++||+|.+|++||..|.|.++++|..||.+||.||
T Consensus 8 lq~~l~~l~~~v~~~~De~GR~lsd~F~~LPsk~----pdYY~--k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf~NA 81 (147)
T 3iu6_A 8 IQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVD----PNFPN--KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLERA 81 (147)
T ss_dssp HHHHHHHHHHHHHTCBCTTSCBGGGGGTTCCSSC----TTSTT--SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCCcchHHHhHCCCCC----ccccC--CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 4556778888888774 589999998876 78998 99999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHhhC
Q 020512 178 MKYNDERSDVHVMAKTLLAKFEEKWLQLL 206 (325)
Q Consensus 178 ~~YN~~~s~v~~~A~~L~~~fe~~~~~~~ 206 (325)
++||.+||.||.+|..|+++|.+.+.++.
T Consensus 82 r~yN~e~S~IyeDAv~Lq~~f~~~r~eL~ 110 (147)
T 3iu6_A 82 RRMNRTDSEIYEDAVELQQFFIKIRDELC 110 (147)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999988763
No 42
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.66 E-value=1.3e-16 Score=139.63 Aligned_cols=98 Identities=14% Similarity=0.304 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCccCcCCCCCCCCCchhhhccCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHchhhcC
Q 020512 102 EELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYN 181 (325)
Q Consensus 102 ~~l~~~~~~il~~l~~~~~s~~F~~pv~~~~~~~PdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~YN 181 (325)
.++...+..||..|..++.++||+.+ .++.||||.||++||+.|.|.|+.+|.+||.|||.||..||
T Consensus 74 ~el~~~l~~vl~~L~~~~~s~~~~~y-------------~~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~~~ 140 (183)
T 3lqh_A 74 KELQISLKQVLTALLNSRTTSHLLRY-------------RQQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSD 140 (183)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHTC-------------CC--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhccccHhhhhh-------------hhcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 35667789999999999999999773 15999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhCCCCchH
Q 020512 182 DERSDVHVMAKTLLAKFEEKWLQLLPKVTEE 212 (325)
Q Consensus 182 ~~~s~v~~~A~~L~~~fe~~~~~~~~~~~~~ 212 (325)
.+++.+..++..|+.+|++.++.++|++...
T Consensus 141 ~~~~e~~~ag~~l~~~f~~~l~~vfpwf~~~ 171 (183)
T 3lqh_A 141 GGQPEIKKANSMVKSFFIRQMERVFPWFSVK 171 (183)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHCTTSCGG
T ss_pred CCChhhhhhhhHHHHHHHHHHHHHCCCCCcc
Confidence 9999999999999999999999999998754
No 43
>2jns_A Bromodomain-containing protein 4; ET-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.46 E-value=2.3e-14 Score=111.62 Aligned_cols=62 Identities=26% Similarity=0.469 Sum_probs=58.4
Q ss_pred hhccCCCHHHHHHHHHHhcCCChHhHHHHHHHHHhcCCCCC-CCCCeEEEeCCCCCchhhhhh
Q 020512 262 QKCRKTSTEEKRKLGAALTRLSPEDLGKALEIVAQSNTGFQ-ATAEEVELDMDAQVLVLDQCD 323 (325)
Q Consensus 262 ~~~r~mt~eEK~~L~~~i~~L~~e~l~~vi~II~~~~p~~~-~~~deiElDid~Ls~~~l~~~ 323 (325)
+.+++||++||++|+.+|++||+++|.+||+||++++|++. .+++|||||||+|++.||..+
T Consensus 13 ~~~~~mT~eEK~~Ls~~I~~Lp~e~L~~Vi~II~~~~p~l~~~~~dEIEiDid~L~~~TL~~L 75 (90)
T 2jns_A 13 DKCKPMSYEEKRQLSLDINKLPGEKLGRVVHIIQSREPSLKNSNPDEIEIDFETLKPSTLREL 75 (90)
T ss_dssp SSCCCCCHHHHHHHHHHHTTSCHHHHTTHHHHHHTTCGGGTTSCTTSCCCCTTTSCHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHhcCccccCCCCCeEEEeccCCCHHHHHHH
Confidence 45799999999999999999999999999999999999987 689999999999999999865
No 44
>2lm0_A AF4/FMR2 family member 1/protein AF-9 chimera; intrinsically disordered, nuclear protein; NMR {Homo sapiens}
Probab=93.23 E-value=0.08 Score=42.44 Aligned_cols=56 Identities=14% Similarity=0.124 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHhcCCC-hHhHHHHHHHHHhcCCCCCCCCCeEEEeCCCCCchhhhhh
Q 020512 267 TSTEEKRKLGAALTRLS-PEDLGKALEIVAQSNTGFQATAEEVELDMDAQVLVLDQCD 323 (325)
Q Consensus 267 mt~eEK~~L~~~i~~L~-~e~l~~vi~II~~~~p~~~~~~deiElDid~Ls~~~l~~~ 323 (325)
-=.+|-+.|-..|..|. .+.|++|+++|++ .+.+...+..+.||+.+|+..|.+-+
T Consensus 59 ~y~~~L~~l~~rim~l~d~~~lq~iv~li~~-tG~~~it~~tfDFDLc~LD~~Tv~kl 115 (125)
T 2lm0_A 59 AYLDELVELHRRLMTLRERHILQQIVNLIEE-TGHFHITNTTFDFDLCSLDKTTVRKL 115 (125)
T ss_dssp STHHHHHHHHHHHHTCCCCSSHHHHHHHHHT-SCCEEECSSCEEECTTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHh-cCceeeecccccceeeccCHHHHHHH
Confidence 34578889999999995 5679999999998 44667899999999999999998754
No 45
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=56.65 E-value=16 Score=24.69 Aligned_cols=31 Identities=16% Similarity=0.358 Sum_probs=26.4
Q ss_pred ChHHHHHHhhhHHHHHHhHHHHHHHHHHHHH
Q 020512 22 DVAEVESFTLRVDDIFQKVDKLEERVNEIEQ 52 (325)
Q Consensus 22 ~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~ 52 (325)
..++++.|++++++++.|+..|..++.+...
T Consensus 17 ~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 17 ENPEIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3489999999999999999999988866543
No 46
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=34.31 E-value=31 Score=20.10 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=15.8
Q ss_pred HHHhhhHHHHHHhHHHHHHHHH
Q 020512 27 ESFTLRVDDIFQKVDKLEERVN 48 (325)
Q Consensus 27 ~~~~~~~~~~~~k~~~l~~~~~ 48 (325)
...|.+|..|..|++.|..++.
T Consensus 2 Q~IkkELtQIK~kvDsLLe~Le 23 (28)
T 1txp_A 2 QAIKKELTQIKQKVDSLLENLE 23 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888776663
No 47
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=26.54 E-value=86 Score=17.58 Aligned_cols=21 Identities=14% Similarity=0.476 Sum_probs=15.8
Q ss_pred HHHhhhHHHHHHhHHHHHHHH
Q 020512 27 ESFTLRVDDIFQKVDKLEERV 47 (325)
Q Consensus 27 ~~~~~~~~~~~~k~~~l~~~~ 47 (325)
+.|-.+|+++.+.+++|+.++
T Consensus 4 delykeledlqerlrklrkkl 24 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 456667888888888888766
No 48
>3kxe_C Antitoxin protein PARD-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=24.76 E-value=70 Score=23.76 Aligned_cols=28 Identities=14% Similarity=0.211 Sum_probs=23.3
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHc
Q 020512 149 STIKKQMEAKEYKNVREICTDVRLVFKN 176 (325)
Q Consensus 149 ~tIk~kL~~~~Y~s~~ef~~Dv~Lif~N 176 (325)
.-|...+..|.|.|.+++++|.-..+..
T Consensus 16 ~~i~~~V~sG~Y~s~SEviR~~lR~l~~ 43 (88)
T 3kxe_C 16 AFIDSQVADGRYGSASEVIRAGLRLLEE 43 (88)
T ss_dssp HHHHHHHTTTSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 5688999999999999999996655544
No 49
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=24.16 E-value=1.2e+02 Score=19.71 Aligned_cols=28 Identities=14% Similarity=0.432 Sum_probs=22.6
Q ss_pred ChHHHHHHhhh-HHHHHHhHHHHHHHHHH
Q 020512 22 DVAEVESFTLR-VDDIFQKVDKLEERVNE 49 (325)
Q Consensus 22 ~~~~~~~~~~~-~~~~~~k~~~l~~~~~~ 49 (325)
+..++++||+. |.|++..+.|+.+.|-+
T Consensus 5 ~~~dle~~KqEIL~E~RkElqK~K~EIIe 33 (45)
T 1use_A 5 DYSDLQRVKQELLEEVKKELQKVKEEIIE 33 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999987 57888888888887754
No 50
>2c35_A Human RPB4, DNA-directed RNA polymerase II 16 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: a.60.8.2
Probab=23.36 E-value=53 Score=26.94 Aligned_cols=35 Identities=23% Similarity=0.330 Sum_probs=31.0
Q ss_pred ccCCCHHHHHHHHHHhc-CCChHhHHHHHHHHHhcC
Q 020512 264 CRKTSTEEKRKLGAALT-RLSPEDLGKALEIVAQSN 298 (325)
Q Consensus 264 ~r~mt~eEK~~L~~~i~-~L~~e~l~~vi~II~~~~ 298 (325)
..|-|.+|-+.|...+. .+++++|.+|+++|++..
T Consensus 113 L~P~t~dEar~lipsl~~r~sdEeLe~ILd~l~k~r 148 (152)
T 2c35_A 113 LCPETAEESKALIPSLEGRFEDEELQQILDDIQTKR 148 (152)
T ss_dssp HCCSSHHHHHHHCGGGTTTSCHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH
Confidence 47889999999999885 789999999999999864
Done!