BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>020513
MNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECL
LLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHK
ENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEEWME
KEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPDANLKEKIKGMSLQ
ICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEECKRRACIEQASLQ
RIAELETQIEKGQNKFVATGRHLPI

High Scoring Gene Products

Symbol, full name Information P value
AT5G07890 protein from Arabidopsis thaliana 5.1e-51

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  020513
        (325 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2142858 - symbol:AT5G07890 "AT5G07890" species...   530  5.1e-51   1


>TAIR|locus:2142858 [details] [associations]
            symbol:AT5G07890 "AT5G07890" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005737
            "cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005634 "nucleus" evidence=IDA] GO:GO:0005634
            EMBL:CP002688 GenomeReviews:BA000015_GR EMBL:AK317060
            IPI:IPI00548486 RefSeq:NP_001031851.1 RefSeq:NP_196406.2
            UniGene:At.21358 ProteinModelPortal:B9DG86
            EnsemblPlants:AT5G07890.1 EnsemblPlants:AT5G07890.3 GeneID:830682
            KEGG:ath:AT5G07890 TAIR:At5g07890 eggNOG:NOG279825
            HOGENOM:HOG000242424 OMA:EDTARIQ PhylomeDB:B9DG86
            ProtClustDB:CLSN2690883 Genevestigator:B9DG86 Uniprot:B9DG86
        Length = 409

 Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
 Identities = 126/325 (38%), Positives = 185/325 (56%)

Query:     1 MNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECL 60
             +NC +EIDYL+DQL  R++EV  L+EH+H LE KL +   L+++V  L +EL  S SE L
Sbjct:    88 LNCYKEIDYLRDQLIFRSKEVNYLNEHLHDLEFKLAESRNLEEEVNSLRDELCMSKSEHL 147

Query:    61 LLMEELQSKEERLRNSALHXXXXXXXXXXXXXXXQCEIESLKIDMIALEQTCVEAKKVHK 120
             LL++EL+SKE  L+ S+L                 CEIES+K+D+ ALEQ   +A K+ +
Sbjct:   148 LLLQELESKEIELQCSSLTLEKLEETISSLTLESLCEIESMKLDITALEQALFDAMKIQE 207

Query:   121 ENVQEKARMNSLIKELEVRTQDSQEIIXXXXXXXXXXXXXXDSYETNGRVFCQKIEEWME 180
             E++QEK ++  +I+E + ++Q ++E +               + E + + F Q  +E +E
Sbjct:   208 ESIQEKDQLKGIIEESQFQSQRAKENVKYIEKQNEDLREKFTASEKSIKDFFQSTKERLE 267

Query:   181 KEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPDANLKEKIKGMSLQ 240
              ED + L+     +EL     VS E   C   F A++ KL L    + NL +K++GM  Q
Sbjct:   268 SEDEQPLNAMCFFAELSHVLPVSNEVRNC---FDAIMKKLEL--SQNVNLIDKVEGMGKQ 322

Query:   241 ICEYELLVKQXXXXXXXXXXXXXXXXXXXXQEMAELRYQMTSLLEEECKRRACIEQASLQ 300
             I ++E +VKQ                    QEMAELRY+MT LL+EE  RR CIEQASLQ
Sbjct:   323 IHQHEDVVKQLKEELKQEKLKAKEEAEDLTQEMAELRYKMTCLLDEERNRRVCIEQASLQ 382

Query:   301 RIAELETQIEKGQNKFVATGRHLPI 325
             RI+ELE QI++   K  A+   LP+
Sbjct:   383 RISELEAQIKRDVKK-PASNEMLPL 406


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.130   0.352    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      325       276   0.00079  115 3  11 23  0.39    34
                                                     33  0.41    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  596 (63 KB)
  Total size of DFA:  190 KB (2108 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  27.47u 0.12s 27.59t   Elapsed:  00:00:01
  Total cpu time:  27.48u 0.12s 27.60t   Elapsed:  00:00:01
  Start:  Tue May 21 04:33:50 2013   End:  Tue May 21 04:33:51 2013

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