BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020513
         (325 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q811U3|RB6I2_RAT ELKS/Rab6-interacting/CAST family member 1 OS=Rattus norvegicus
           GN=Erc1 PE=1 SV=1
          Length = 948

 Score = 36.6 bits (83), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 44/67 (65%), Gaps = 3/67 (4%)

Query: 40  ILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSALES---QC 96
            +++K+GQ+++EL R D+E L L  +L++   +  +S  HI+ L+ES+++    +   Q 
Sbjct: 435 FMKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQT 494

Query: 97  EIESLKI 103
           E+++L++
Sbjct: 495 EVDALRL 501


>sp|Q99MI1|RB6I2_MOUSE ELKS/Rab6-interacting/CAST family member 1 OS=Mus musculus GN=Erc1
           PE=1 SV=1
          Length = 1120

 Score = 35.8 bits (81), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 43/66 (65%), Gaps = 3/66 (4%)

Query: 41  LQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSALES---QCE 97
           LQ ++GQ+++EL R D+E L L  +L++   +  +S  HI+ L+ES+++    +   Q E
Sbjct: 464 LQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTE 523

Query: 98  IESLKI 103
           +++L++
Sbjct: 524 VDALRL 529


>sp|Q8IUD2|RB6I2_HUMAN ELKS/Rab6-interacting/CAST family member 1 OS=Homo sapiens GN=ERC1
           PE=1 SV=1
          Length = 1116

 Score = 35.4 bits (80), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 43/66 (65%), Gaps = 3/66 (4%)

Query: 41  LQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSALES---QCE 97
           LQ ++GQ+++EL R D+E L L  +L++   +  +S  HI+ L+ES+++    +   Q E
Sbjct: 464 LQAEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTE 523

Query: 98  IESLKI 103
           +++L++
Sbjct: 524 VDALRL 529


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.312    0.129    0.340 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,252,973
Number of Sequences: 539616
Number of extensions: 4420414
Number of successful extensions: 34795
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 2140
Number of HSP's that attempted gapping in prelim test: 25194
Number of HSP's gapped (non-prelim): 7592
length of query: 325
length of database: 191,569,459
effective HSP length: 118
effective length of query: 207
effective length of database: 127,894,771
effective search space: 26474217597
effective search space used: 26474217597
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)