Query 020513
Match_columns 325
No_of_seqs 13 out of 15
Neff 2.2
Searched_HMMs 46136
Date Fri Mar 29 02:59:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020513.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020513hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1196 Smc Chromosome segrega 96.7 1.2 2.5E-05 48.5 25.5 173 3-179 672-862 (1163)
2 TIGR02169 SMC_prok_A chromosom 95.4 3.9 8.4E-05 42.4 26.4 40 241-281 978-1017(1164)
3 PRK11637 AmiB activator; Provi 94.0 6.3 0.00014 38.1 21.5 87 93-179 44-130 (428)
4 PRK02224 chromosome segregatio 93.7 9.9 0.00021 39.4 28.8 25 260-284 533-557 (880)
5 TIGR02169 SMC_prok_A chromosom 93.6 10 0.00022 39.4 25.9 9 269-277 474-482 (1164)
6 TIGR02168 SMC_prok_B chromosom 93.3 11 0.00025 38.7 26.1 29 134-162 792-820 (1179)
7 PF00261 Tropomyosin: Tropomyo 92.8 7.2 0.00016 35.2 20.8 226 6-276 9-234 (237)
8 PF07888 CALCOCO1: Calcium bin 90.8 24 0.00052 37.1 26.0 59 9-70 140-198 (546)
9 TIGR00606 rad50 rad50. This fa 88.9 43 0.00094 37.3 21.2 22 236-257 1072-1093(1311)
10 PHA02562 46 endonuclease subun 87.8 28 0.00061 33.9 20.4 52 230-282 304-355 (562)
11 PRK09039 hypothetical protein; 87.7 28 0.00061 33.7 16.0 132 9-165 43-178 (343)
12 COG1196 Smc Chromosome segrega 87.6 50 0.0011 36.5 26.6 55 10-64 672-726 (1163)
13 PF05701 WEMBL: Weak chloropla 86.9 38 0.00082 34.4 27.8 271 15-305 151-440 (522)
14 PF10473 CENP-F_leu_zip: Leuci 84.7 26 0.00056 30.8 11.9 107 39-163 20-126 (140)
15 TIGR00606 rad50 rad50. This fa 84.6 73 0.0016 35.6 26.2 48 232-281 998-1045(1311)
16 PRK01156 chromosome segregatio 80.5 81 0.0018 33.2 15.7 77 70-154 642-718 (895)
17 PRK03918 chromosome segregatio 78.5 88 0.0019 32.5 27.0 23 234-256 454-476 (880)
18 PF05667 DUF812: Protein of un 78.0 91 0.002 32.9 15.1 59 232-291 408-466 (594)
19 PF09728 Taxilin: Myosin-like 76.8 73 0.0016 30.6 18.6 133 21-163 14-146 (309)
20 PRK01156 chromosome segregatio 76.1 1.1E+02 0.0024 32.3 23.1 65 21-85 175-239 (895)
21 PF15272 BBP1_C: Spindle pole 69.9 96 0.0021 28.9 15.6 74 232-310 75-149 (196)
22 PRK11637 AmiB activator; Provi 65.8 1.4E+02 0.003 29.2 23.5 28 133-160 91-118 (428)
23 KOG0978 E3 ubiquitin ligase in 65.8 1.2E+02 0.0025 33.1 12.8 110 44-157 483-606 (698)
24 PF00038 Filament: Intermediat 65.7 1.1E+02 0.0024 28.0 24.5 80 62-152 52-131 (312)
25 KOG0250 DNA repair protein RAD 63.4 1.2E+02 0.0027 34.5 12.8 51 126-176 670-720 (1074)
26 PF05557 MAD: Mitotic checkpoi 63.3 36 0.00078 35.5 8.4 115 62-178 508-646 (722)
27 PF13935 Ead_Ea22: Ead/Ea22-li 62.1 37 0.0008 28.8 6.9 6 301-306 134-139 (139)
28 PF09726 Macoilin: Transmembra 61.4 60 0.0013 34.8 9.7 92 39-162 548-653 (697)
29 KOG0995 Centromere-associated 60.7 2.4E+02 0.0053 30.3 24.5 137 19-163 235-392 (581)
30 PF05483 SCP-1: Synaptonemal c 60.2 2.8E+02 0.006 30.8 20.4 69 19-87 233-319 (786)
31 PF09730 BicD: Microtubule-ass 59.7 2.7E+02 0.0058 30.5 16.5 109 37-163 70-181 (717)
32 PF09763 Sec3_C: Exocyst compl 59.2 2.2E+02 0.0047 29.7 13.1 132 107-247 27-163 (701)
33 PF15450 DUF4631: Domain of un 58.9 2.5E+02 0.0055 29.9 21.1 156 5-169 258-445 (531)
34 KOG0161 Myosin class II heavy 58.8 4.1E+02 0.0089 32.4 27.8 51 232-282 1090-1143(1930)
35 KOG0994 Extracellular matrix g 58.4 3.8E+02 0.0083 31.9 22.6 165 101-283 1537-1708(1758)
36 PRK02224 chromosome segregatio 57.7 2.5E+02 0.0054 29.5 29.3 27 230-256 473-499 (880)
37 PF10174 Cast: RIM-binding pro 57.4 3E+02 0.0065 30.3 23.7 183 64-282 294-483 (775)
38 PRK09039 hypothetical protein; 57.1 1.9E+02 0.0042 28.0 11.9 105 59-163 41-155 (343)
39 PF11598 COMP: Cartilage oligo 55.9 51 0.0011 24.3 5.8 35 236-281 5-39 (45)
40 KOG4302 Microtubule-associated 55.8 80 0.0017 34.1 9.5 75 91-165 189-267 (660)
41 PF15619 Lebercilin: Ciliary p 55.5 1.6E+02 0.0035 26.7 13.1 118 42-162 67-188 (194)
42 PF06005 DUF904: Protein of un 54.2 94 0.002 24.4 7.5 34 131-164 4-37 (72)
43 PF07160 DUF1395: Protein of u 54.1 45 0.00098 31.1 6.6 61 225-286 15-75 (243)
44 PRK09174 F0F1 ATP synthase sub 52.7 1.6E+02 0.0036 26.7 9.8 21 244-264 103-123 (204)
45 PF05701 WEMBL: Weak chloropla 52.2 2.8E+02 0.006 28.4 24.2 170 8-181 72-264 (522)
46 PF09728 Taxilin: Myosin-like 52.1 2.3E+02 0.0049 27.4 17.4 60 104-163 37-96 (309)
47 PF05377 FlaC_arch: Flagella a 50.3 33 0.00072 26.3 4.3 40 133-172 2-41 (55)
48 KOG0239 Kinesin (KAR3 subfamil 50.1 1.6E+02 0.0034 31.6 10.6 75 98-172 243-320 (670)
49 KOG0250 DNA repair protein RAD 48.4 4.9E+02 0.011 30.1 22.4 222 8-280 224-452 (1074)
50 PRK13454 F0F1 ATP synthase sub 47.7 1.8E+02 0.004 25.5 9.1 24 244-267 88-111 (181)
51 PF12777 MT: Microtubule-bindi 47.7 28 0.0006 33.2 4.3 87 95-181 213-299 (344)
52 PF12128 DUF3584: Protein of u 47.6 4.5E+02 0.0099 29.5 26.8 78 232-309 788-871 (1201)
53 PF09738 DUF2051: Double stran 46.4 2.9E+02 0.0064 27.0 11.6 158 69-263 89-250 (302)
54 PF08614 ATG16: Autophagy prot 45.9 1.6E+02 0.0035 25.9 8.5 110 39-163 70-183 (194)
55 PF08317 Spc7: Spc7 kinetochor 45.0 2.8E+02 0.0061 26.4 13.3 64 88-151 201-264 (325)
56 PHA03325 nuclear-egress-membra 44.8 11 0.00024 38.4 1.3 71 7-80 155-227 (418)
57 PF10473 CENP-F_leu_zip: Leuci 44.6 75 0.0016 27.9 6.2 77 13-89 11-105 (140)
58 PF07888 CALCOCO1: Calcium bin 44.4 4.2E+02 0.0092 28.3 21.7 71 18-91 163-233 (546)
59 KOG0976 Rho/Rac1-interacting s 44.2 5.6E+02 0.012 29.6 18.2 204 38-260 87-305 (1265)
60 PF12325 TMF_TATA_bd: TATA ele 43.8 1.5E+02 0.0033 25.3 7.8 45 232-276 16-63 (120)
61 KOG1899 LAR transmembrane tyro 42.4 3.8E+02 0.0083 29.8 11.9 75 8-110 121-195 (861)
62 PRK04863 mukB cell division pr 42.3 6.4E+02 0.014 29.8 18.9 186 53-256 275-466 (1486)
63 KOG0994 Extracellular matrix g 41.9 6.9E+02 0.015 30.0 21.5 209 105-315 1407-1634(1758)
64 PF02181 FH2: Formin Homology 41.7 3E+02 0.0066 25.8 10.3 99 81-179 259-366 (370)
65 PF05278 PEARLI-4: Arabidopsis 41.6 1.3E+02 0.0028 29.4 7.7 92 61-161 133-230 (269)
66 COG5185 HEC1 Protein involved 41.1 3.9E+02 0.0085 28.8 11.6 56 116-175 242-297 (622)
67 KOG0963 Transcription factor/C 40.5 5.2E+02 0.011 28.2 18.4 132 19-165 121-269 (629)
68 COG4026 Uncharacterized protei 40.2 3.6E+02 0.0078 26.6 10.4 53 112-164 137-189 (290)
69 PF10168 Nup88: Nuclear pore c 39.8 2.8E+02 0.0061 30.0 10.6 32 229-260 636-667 (717)
70 PF15619 Lebercilin: Ciliary p 39.1 3E+02 0.0065 25.0 14.2 37 132-168 13-49 (194)
71 PF06785 UPF0242: Uncharacteri 38.7 4.6E+02 0.01 27.1 11.9 119 169-311 88-212 (401)
72 PF04156 IncA: IncA protein; 38.4 2.5E+02 0.0055 23.9 11.1 68 20-90 82-149 (191)
73 PF15290 Syntaphilin: Golgi-lo 37.9 1E+02 0.0022 30.6 6.6 46 241-290 63-112 (305)
74 KOG1003 Actin filament-coating 37.8 3.7E+02 0.0079 25.6 12.8 130 125-263 5-161 (205)
75 TIGR00219 mreC rod shape-deter 37.6 1.1E+02 0.0023 29.0 6.5 53 111-166 60-112 (283)
76 PF06582 DUF1136: Repeat of un 37.3 23 0.00051 23.6 1.5 13 297-309 9-21 (28)
77 COG3883 Uncharacterized protei 37.2 4E+02 0.0087 25.9 18.4 74 106-179 34-107 (265)
78 PF08232 Striatin: Striatin fa 37.1 1E+02 0.0022 26.4 5.7 45 272-317 26-70 (134)
79 KOG0977 Nuclear envelope prote 36.7 5.6E+02 0.012 27.4 21.3 62 225-286 303-364 (546)
80 COG2433 Uncharacterized conser 36.6 2.6E+02 0.0056 30.5 9.7 87 68-158 419-508 (652)
81 PRK10884 SH3 domain-containing 36.4 2.8E+02 0.006 25.5 8.7 34 131-164 118-151 (206)
82 PRK00182 tatB sec-independent 36.3 2.6E+02 0.0055 25.5 8.3 56 217-275 13-68 (160)
83 KOG0996 Structural maintenance 36.0 8E+02 0.017 29.0 21.3 99 64-162 900-1016(1293)
84 PF05266 DUF724: Protein of un 35.3 1.1E+02 0.0024 27.8 5.9 63 8-70 113-179 (190)
85 PF12718 Tropomyosin_1: Tropom 35.2 3E+02 0.0064 23.8 13.2 69 98-166 2-70 (143)
86 PF10174 Cast: RIM-binding pro 34.3 6.8E+02 0.015 27.7 23.7 113 38-154 282-408 (775)
87 PF15070 GOLGA2L5: Putative go 34.3 6.1E+02 0.013 27.1 25.1 32 123-154 107-138 (617)
88 PF13815 Dzip-like_N: Iguana/D 33.8 2E+02 0.0044 23.6 6.8 85 75-163 24-112 (118)
89 PF07989 Microtub_assoc: Micro 33.3 1.6E+02 0.0035 23.2 5.8 58 97-154 15-73 (75)
90 PF05529 Bap31: B-cell recepto 32.9 1.8E+02 0.004 25.2 6.8 17 226-242 126-142 (192)
91 PF10267 Tmemb_cc2: Predicted 32.8 2.4E+02 0.0051 28.7 8.3 93 37-132 220-317 (395)
92 COG0419 SbcC ATPase involved i 32.7 6.7E+02 0.014 27.1 28.2 31 133-163 370-400 (908)
93 TIGR03185 DNA_S_dndD DNA sulfu 32.4 5.9E+02 0.013 26.4 19.9 206 104-315 210-450 (650)
94 PRK11032 hypothetical protein; 30.8 69 0.0015 28.8 3.9 37 237-273 1-47 (160)
95 PF02416 MttA_Hcf106: mttA/Hcf 30.6 1.8E+02 0.0038 21.5 5.4 42 217-258 9-50 (53)
96 PF12309 KBP_C: KIF-1 binding 29.7 5.4E+02 0.012 25.5 10.1 57 213-276 306-362 (371)
97 PF14357 DUF4404: Domain of un 29.6 78 0.0017 25.3 3.6 72 246-323 4-76 (85)
98 PRK03947 prefoldin subunit alp 29.2 3.3E+02 0.0071 22.5 7.4 36 129-164 4-39 (140)
99 KOG1029 Endocytic adaptor prot 29.1 9.4E+02 0.02 27.7 14.0 69 96-164 444-519 (1118)
100 TIGR01410 tatB twin arginine-t 27.8 3.1E+02 0.0068 21.8 7.1 44 217-260 11-54 (80)
101 KOG4603 TBP-1 interacting prot 27.8 2.5E+02 0.0053 26.6 6.9 47 121-167 76-122 (201)
102 PF06428 Sec2p: GDP/GTP exchan 27.5 39 0.00084 28.1 1.6 64 100-163 19-83 (100)
103 PF08988 DUF1895: Protein of u 27.4 1.5E+02 0.0033 23.3 4.8 12 105-116 1-12 (68)
104 COG3074 Uncharacterized protei 27.1 1.2E+02 0.0026 25.0 4.3 31 132-162 5-35 (79)
105 PF05769 DUF837: Protein of un 27.0 4.7E+02 0.01 23.6 13.9 153 8-165 13-180 (181)
106 PF05615 THOC7: Tho complex su 26.9 3.7E+02 0.008 22.3 8.9 83 74-156 22-106 (139)
107 PRK13922 rod shape-determining 26.6 2.1E+02 0.0046 26.0 6.3 52 111-166 63-114 (276)
108 cd07666 BAR_SNX7 The Bin/Amphi 26.4 5.6E+02 0.012 24.3 12.2 76 14-89 49-128 (243)
109 KOG0995 Centromere-associated 26.4 8.6E+02 0.019 26.4 13.3 107 9-135 429-535 (581)
110 PF13851 GAS: Growth-arrest sp 26.3 4.9E+02 0.011 23.5 14.1 86 95-183 99-195 (201)
111 PF15566 Imm18: Immunity prote 26.1 32 0.0007 26.3 0.8 22 5-29 2-24 (52)
112 PRK15422 septal ring assembly 25.5 1.3E+02 0.0029 24.7 4.3 34 131-164 4-37 (79)
113 PRK04654 sec-independent trans 25.4 6E+02 0.013 24.3 10.8 61 217-282 12-72 (214)
114 KOG0243 Kinesin-like protein [ 25.0 1.1E+03 0.024 27.3 20.7 54 4-57 410-469 (1041)
115 PF13713 BRX_N: Transcription 24.9 62 0.0013 23.3 2.1 29 140-168 7-35 (39)
116 COG1390 NtpE Archaeal/vacuolar 24.9 3.9E+02 0.0085 24.3 7.6 23 246-268 6-28 (194)
117 KOG0447 Dynamin-like GTP bindi 24.9 3.8E+02 0.0082 29.8 8.6 62 113-175 215-280 (980)
118 KOG4674 Uncharacterized conser 24.8 1.4E+03 0.03 28.2 27.8 163 3-176 803-971 (1822)
119 KOG0946 ER-Golgi vesicle-tethe 24.8 1.1E+03 0.024 27.1 13.9 37 127-163 660-696 (970)
120 PRK06569 F0F1 ATP synthase sub 24.7 5.1E+02 0.011 23.2 8.9 35 255-289 67-113 (155)
121 PRK04098 sec-independent trans 24.3 5.4E+02 0.012 23.4 8.3 41 218-258 13-53 (158)
122 PF00038 Filament: Intermediat 24.3 5.5E+02 0.012 23.4 18.8 57 230-286 228-284 (312)
123 KOG4436 Predicted GTPase activ 24.2 95 0.0021 34.8 4.2 49 236-286 826-877 (948)
124 PF06583 Neogenin_C: Neogenin 24.1 43 0.00093 33.1 1.5 22 259-280 289-310 (319)
125 PF05529 Bap31: B-cell recepto 23.7 4E+02 0.0088 23.1 7.3 36 124-159 154-189 (192)
126 PF04111 APG6: Autophagy prote 23.3 6.8E+02 0.015 24.1 10.4 73 8-84 12-84 (314)
127 PRK10361 DNA recombination pro 22.9 8.9E+02 0.019 25.4 16.9 53 100-155 110-164 (475)
128 PF04880 NUDE_C: NUDE protein, 22.9 59 0.0013 29.4 2.0 32 250-282 24-55 (166)
129 PF09789 DUF2353: Uncharacteri 22.8 7.7E+02 0.017 24.6 13.2 166 55-274 6-178 (319)
130 PF01093 Clusterin: Clusterin; 22.8 4.8E+02 0.01 27.0 8.5 56 237-300 32-95 (436)
131 PF06810 Phage_GP20: Phage min 21.1 5.7E+02 0.012 22.4 9.7 88 131-228 27-117 (155)
132 PRK05759 F0F1 ATP synthase sub 20.1 5.1E+02 0.011 21.4 11.1 75 213-290 26-100 (156)
133 COG3883 Uncharacterized protei 20.1 5.9E+02 0.013 24.9 8.1 76 112-187 33-108 (265)
No 1
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.68 E-value=1.2 Score=48.54 Aligned_cols=173 Identities=29% Similarity=0.343 Sum_probs=93.6
Q ss_pred chhhhhhhHHHhhhhhhhhhhhhhhhhhhhhhhccccchHHHHH----HHHHHHh-------hccchhHHHHHHhhhHHH
Q 020513 3 CSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVG----QLEEELR-------RSDSECLLLMEELQSKEE 71 (325)
Q Consensus 3 C~QEIDYLqDQLn~Rn~Evn~l~EHih~LElKL~~~e~l~e~V~----~l~eEL~-------rS~Se~~lL~qEle~kE~ 71 (325)
+..+|+.++.++.....+++.+.-++..++-.+.++..-...+. .++.++. .-.+..=.+=+++.....
T Consensus 672 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 751 (1163)
T COG1196 672 LEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEE 751 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999988888877765443333 3333333 222222222233333233
Q ss_pred HhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHH---HHHHHHhhhhhhhH----HHHHHHHHHHHHHHHHhHhHH
Q 020513 72 RLRNSALHIKKLEESISSSALESQCEIESLKIDMIALE---QTCVEAKKVHKENV----QEKARMNSLIKELEVRTQDSQ 144 (325)
Q Consensus 72 eLq~sal~IeKLEEsisS~tLeSQcEIESmKLD~~aLE---Q~lfdA~k~q~et~----~ek~~m~~~i~Elq~q~q~Aq 144 (325)
++...--.++++++.+.++.- .+..++-++..+. ++.-.+-.-....+ ...+.+.+-+...+.+.+.+.
T Consensus 752 ~~~~~~~~~~~~~~~l~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 827 (1163)
T COG1196 752 ELEELQERLEELEEELESLEE----ALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLE 827 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555555554421 1133333333333 12222211111111 223344444555555556667
Q ss_pred HHHHHHHHhhHHHHHhhhhccchhHHHHHHhHHHH
Q 020513 145 EIIECLDKENKELKEKLDSYETNGRVFCQKIEEWM 179 (325)
Q Consensus 145 ~~i~~L~kenkeL~ekl~~se~n~r~~~q~~~e~l 179 (325)
.-|..+..+..++.+++.....++..+-...++..
T Consensus 828 ~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 862 (1163)
T COG1196 828 QEIEELEEEIEELEEKLDELEEELEELEKELEELK 862 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 77777777777777777777666666555555544
No 2
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=95.44 E-value=3.9 Score=42.40 Aligned_cols=40 Identities=30% Similarity=0.496 Sum_probs=25.4
Q ss_pred HhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHh
Q 020513 241 ICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMT 281 (325)
Q Consensus 241 i~eyE~LvkQLKeELreEKlKAKEEAEDLtQEMAELRYQmT 281 (325)
|.+|+.+.+++ +.|+.+.-...+....|.+-+..|+..+.
T Consensus 978 i~~~~~~~~~~-~~l~~q~~dl~~~~~~l~~~i~~l~~~~~ 1017 (1164)
T TIGR02169 978 IQEYEEVLKRL-DELKEKRAKLEEERKAILERIEEYEKKKR 1017 (1164)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46676665554 35666666666777777777777774433
No 3
>PRK11637 AmiB activator; Provisional
Probab=93.98 E-value=6.3 Score=38.12 Aligned_cols=87 Identities=13% Similarity=0.231 Sum_probs=60.2
Q ss_pred ccccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhccchhHHHH
Q 020513 93 ESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFC 172 (325)
Q Consensus 93 eSQcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~se~n~r~~~ 172 (325)
+.+=++.+++-.+..+++.+-+..+-..+...+.+.++.-|..++.++.+.+.-|..++.+...+...+...+.......
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~ 123 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQE 123 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777777777777777777777777777777777777777777777777777777777766666655555555
Q ss_pred HHhHHHH
Q 020513 173 QKIEEWM 179 (325)
Q Consensus 173 q~~~e~l 179 (325)
..+..++
T Consensus 124 ~~l~~rl 130 (428)
T PRK11637 124 RLLAAQL 130 (428)
T ss_pred HHHHHHH
Confidence 4554444
No 4
>PRK02224 chromosome segregation protein; Provisional
Probab=93.71 E-value=9.9 Score=39.42 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=13.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhH
Q 020513 260 FKAKEEAEDLAQEMAELRYQMTSLL 284 (325)
Q Consensus 260 lKAKEEAEDLtQEMAELRYQmTglL 284 (325)
-.+.+.++.|..++++||-.++...
T Consensus 533 e~~~~~~~~l~~e~~~l~~~~~~~~ 557 (880)
T PRK02224 533 EEKRERAEELRERAAELEAEAEEKR 557 (880)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666666655554433
No 5
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=93.63 E-value=10 Score=39.38 Aligned_cols=9 Identities=22% Similarity=0.409 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 020513 269 LAQEMAELR 277 (325)
Q Consensus 269 LtQEMAELR 277 (325)
+..++..++
T Consensus 474 ~~~~l~~l~ 482 (1164)
T TIGR02169 474 LKEEYDRVE 482 (1164)
T ss_pred HHHHHHHHH
Confidence 333333333
No 6
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=93.26 E-value=11 Score=38.73 Aligned_cols=29 Identities=21% Similarity=0.237 Sum_probs=11.5
Q ss_pred HHHHHHhHhHHHHHHHHHHhhHHHHHhhh
Q 020513 134 KELEVRTQDSQEIIECLDKENKELKEKLD 162 (325)
Q Consensus 134 ~Elq~q~q~Aq~~i~~L~kenkeL~ekl~ 162 (325)
.+++.++..++..+..+..+...++..+.
T Consensus 792 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 820 (1179)
T TIGR02168 792 EQLKEELKALREALDELRAELTLLNEEAA 820 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444433333
No 7
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=92.78 E-value=7.2 Score=35.22 Aligned_cols=226 Identities=27% Similarity=0.310 Sum_probs=146.6
Q ss_pred hhhhhHHHhhhhhhhhhhhhhhhhhhhhhhccccchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhHHHHHh
Q 020513 6 EIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEE 85 (325)
Q Consensus 6 EIDYLqDQLn~Rn~Evn~l~EHih~LElKL~~~e~l~e~V~~l~eEL~rS~Se~~lL~qEle~kE~eLq~sal~IeKLEE 85 (325)
+||=..+++.-=..++.......+..|- +...|.-++..|.++|-+.....--..+-|+..+..+..+--....||.
T Consensus 9 eld~~~~~~~~~~~~l~~~~~~~~~aE~---e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~ 85 (237)
T PF00261_consen 9 ELDEAEERLEEAEEKLKEAEKRAEKAEA---EVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLEN 85 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444443 3345677777788888887777777777777777777777667777773
Q ss_pred hhhccccccccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhcc
Q 020513 86 SISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYE 165 (325)
Q Consensus 86 sisS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~se 165 (325)
...+. + -| |..||+.|=+|+...+++-.--+-..+-+.-++..+..|.+-++.++...++|.+.|..-.
T Consensus 86 r~~~~--e-------er--i~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~ 154 (237)
T PF00261_consen 86 REQSD--E-------ER--IEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVG 154 (237)
T ss_dssp HHHHH--H-------HH--HHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--H-------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHH
Confidence 32211 1 12 4578999999999999988888888888889999999999999999999999999998876
Q ss_pred chhHHHHHHhHHHHhhhhhhhhhhhhhhhhhhhccccccccccchhhhHHHHHHHHHhhCCCCchHHHHHhHHHHHhhHH
Q 020513 166 TNGRVFCQKIEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPDANLKEKIKGMSLQICEYE 245 (325)
Q Consensus 166 ~n~r~~~q~~~e~le~ed~~~l~~q~~~~~l~~~~~~s~~~~~c~~~f~~l~~kl~~~~~~d~~l~~kme~Ms~qi~eyE 245 (325)
.|.+.+-.+....-+.++.. ..-+..|-.+|.-+ -.-.+..-+.+..++
T Consensus 155 ~~lk~lE~~~~~~~~re~~~------------------------e~~i~~L~~~lkea-------E~Rae~aE~~v~~Le 203 (237)
T PF00261_consen 155 NNLKSLEASEEKASEREDEY------------------------EEKIRDLEEKLKEA-------ENRAEFAERRVKKLE 203 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhHHHHHH------------------------HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 66654433322111111110 00011222222111 122344556777888
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 020513 246 LLVKQLKEELRAEKFKAKEEAEDLAQEMAEL 276 (325)
Q Consensus 246 ~LvkQLKeELreEKlKAKEEAEDLtQEMAEL 276 (325)
--|..|.++|...|.+-+.=..+|-+-|++|
T Consensus 204 ~~id~le~eL~~~k~~~~~~~~eld~~l~el 234 (237)
T PF00261_consen 204 KEIDRLEDELEKEKEKYKKVQEELDQTLNEL 234 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8899999999999988888777777777765
No 8
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=90.78 E-value=24 Score=37.10 Aligned_cols=59 Identities=29% Similarity=0.357 Sum_probs=38.4
Q ss_pred hhHHHhhhhhhhhhhhhhhhhhhhhhhccccchHHHHHHHHHHHhhccchhHHHHHHhhhHH
Q 020513 9 YLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKE 70 (325)
Q Consensus 9 YLqDQLn~Rn~Evn~l~EHih~LElKL~~~e~l~e~V~~l~eEL~rS~Se~~lL~qEle~kE 70 (325)
+||.+|----.|-+.|-.-...|+=.+ ..+..+|..|..+|..+..+|.-|-++.+...
T Consensus 140 ~lQ~qlE~~qkE~eeL~~~~~~Le~e~---~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~ 198 (546)
T PF07888_consen 140 LLQNQLEECQKEKEELLKENEQLEEEV---EQLREEVERLEAELEQEEEEMEQLKQQQKELT 198 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666655566665555555555444 55778888888888888888777666554433
No 9
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.93 E-value=43 Score=37.34 Aligned_cols=22 Identities=32% Similarity=0.261 Sum_probs=17.1
Q ss_pred hHHHHHhhHHHHHHHHHHHHHH
Q 020513 236 GMSLQICEYELLVKQLKEELRA 257 (325)
Q Consensus 236 ~Ms~qi~eyE~LvkQLKeELre 257 (325)
.+.-+...++.-|.+|+.+|.+
T Consensus 1072 ~l~g~~k~le~qi~~l~~eL~e 1093 (1311)
T TIGR00606 1072 LALGRQKGYEKEIKHFKKELRE 1093 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc
Confidence 4456677888888899999876
No 10
>PHA02562 46 endonuclease subunit; Provisional
Probab=87.84 E-value=28 Score=33.91 Aligned_cols=52 Identities=12% Similarity=0.259 Sum_probs=31.4
Q ss_pred hHHHHHhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhh
Q 020513 230 LKEKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTS 282 (325)
Q Consensus 230 l~~kme~Ms~qi~eyE~LvkQLKeELreEKlKAKEEAEDLtQEMAELRYQmTg 282 (325)
|.+.+..+..++..++..+..+.+..++ ..++.....++.+.+...|..+..
T Consensus 304 l~d~i~~l~~~l~~l~~~i~~~~~~~~~-~~~~~~~i~el~~~i~~~~~~i~~ 355 (562)
T PHA02562 304 IKDKLKELQHSLEKLDTAIDELEEIMDE-FNEQSKKLLELKNKISTNKQSLIT 355 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777777766655542 444455555566666666655544
No 11
>PRK09039 hypothetical protein; Validated
Probab=87.66 E-value=28 Score=33.66 Aligned_cols=132 Identities=16% Similarity=0.235 Sum_probs=88.7
Q ss_pred hhHHHhhhhhhhhhhhhhhhhh----hhhhhccccchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhHHHHH
Q 020513 9 YLQDQLNARNEEVYSLSEHVHS----LELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLE 84 (325)
Q Consensus 9 YLqDQLn~Rn~Evn~l~EHih~----LElKL~~~e~l~e~V~~l~eEL~rS~Se~~lL~qEle~kE~eLq~sal~IeKLE 84 (325)
||.+|+.-+..|+..|..+|-+ |.+--....+++.+|..++..+. -++.... .|+
T Consensus 43 fLs~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~-----------~a~~~r~----------~Le 101 (343)
T PRK09039 43 FLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLS-----------AAEAERS----------RLQ 101 (343)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-----------HHHHHHH----------HHH
Confidence 6777777788887777777755 34555666788888888888776 2222222 333
Q ss_pred hhhhccccccccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhc
Q 020513 85 ESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSY 164 (325)
Q Consensus 85 EsisS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~s 164 (325)
..+... .=.--.+.--...|...|=..+..-.+.-..-.+++.-|..|+-|+...+.-|+-.+.+.++.+.++...
T Consensus 102 ~~~~~~----~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L 177 (343)
T PRK09039 102 ALLAEL----AGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADL 177 (343)
T ss_pred HHHhhh----hhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222211 0001233444556677888888887788788888888888888888888888888888888887777764
Q ss_pred c
Q 020513 165 E 165 (325)
Q Consensus 165 e 165 (325)
.
T Consensus 178 ~ 178 (343)
T PRK09039 178 G 178 (343)
T ss_pred H
Confidence 3
No 12
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=87.57 E-value=50 Score=36.46 Aligned_cols=55 Identities=25% Similarity=0.301 Sum_probs=35.3
Q ss_pred hHHHhhhhhhhhhhhhhhhhhhhhhhccccchHHHHHHHHHHHhhccchhHHHHH
Q 020513 10 LQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLME 64 (325)
Q Consensus 10 LqDQLn~Rn~Evn~l~EHih~LElKL~~~e~l~e~V~~l~eEL~rS~Se~~lL~q 64 (325)
|+.++..-...+......+.++.-++........+++....++.+.-+..---+.
T Consensus 672 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1163)
T COG1196 672 LEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELA 726 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666667777777777777777777766666666666666665444333333
No 13
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=86.90 E-value=38 Score=34.39 Aligned_cols=271 Identities=20% Similarity=0.274 Sum_probs=154.0
Q ss_pred hhhhhhhhhhhhhhhhhhhhhccccchHHHHHHHHHHHhhccchhH-------HHH----HHhhhHHHHhhhhhhhHHHH
Q 020513 15 NARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECL-------LLM----EELQSKEERLRNSALHIKKL 83 (325)
Q Consensus 15 n~Rn~Evn~l~EHih~LElKL~~~e~l~e~V~~l~eEL~rS~Se~~-------lL~----qEle~kE~eLq~sal~IeKL 83 (325)
.+|+.=.+--.+.+...+......+.|.-+|..+.+.|-.+...|. -+. +...+-+.+|..+--.++.|
T Consensus 151 ~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L 230 (522)
T PF05701_consen 151 DAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEEL 230 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577778888889999999999999999999999999988765443 111 33344445566666666777
Q ss_pred Hhhhhccc-cccccchhhhhhhHHHHHHHHHHHhh--hhhhh--HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHH
Q 020513 84 EESISSSA-LESQCEIESLKIDMIALEQTCVEAKK--VHKEN--VQEKARMNSLIKELEVRTQDSQEIIECLDKENKELK 158 (325)
Q Consensus 84 EEsisS~t-LeSQcEIESmKLD~~aLEQ~lfdA~k--~q~et--~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~ 158 (325)
...+++.. |++ ....-.-|+..|-.-|+.++. ...+. -.....+...+.-....|.+|+..+.....+...|+
T Consensus 231 ~~e~~~~k~Le~--kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~ 308 (522)
T PF05701_consen 231 KEELEAAKDLES--KLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLR 308 (522)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66663321 222 222233455566666666654 11111 111223333455555566666666665555555555
Q ss_pred HhhhhccchhHHHHHHhHHHHhhhhhhhhhhhhhhhhhhhccccccccccchhhhHHHHHHHHHhhCCCCchHHHHHhHH
Q 020513 159 EKLDSYETNGRVFCQKIEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPDANLKEKIKGMS 238 (325)
Q Consensus 159 ekl~~se~n~r~~~q~~~e~le~ed~~~l~~q~~~~~l~~~~~~s~~~~~c~~~f~~l~~kl~~~~~~d~~l~~kme~Ms 238 (325)
....+-..........+..-.++........++...++ ..+-..|..+-....+.++.|.+|.
T Consensus 309 ~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL-----------------~~~r~eLea~~~~e~~~k~~~~~l~ 371 (522)
T PF05701_consen 309 ASVESLRSELEKEKEELERLKEREKEASSEVSSLEAEL-----------------NKTRSELEAAKAEEEKAKEAMSELP 371 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHH-----------------HHHHHHHHHHHhhhcchhhhHHHHH
Confidence 44333221111112222222222222222222222222 2334556666567777788899999
Q ss_pred HHHhhHHHHHHHHHH---HHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 020513 239 LQICEYELLVKQLKE---ELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEECKRRACIEQASLQRIAEL 305 (325)
Q Consensus 239 ~qi~eyE~LvkQLKe---ELreEKlKAKEEAEDLtQEMAELRYQmTglLEEEcKRRaCIEQASlQrIaEL 305 (325)
..+++.-.-..+.|. ..+++-.++|.+++.....+...=-.+.-.+.+-=.=|+. |..++..|.-|
T Consensus 372 ~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKas-Ea~Ala~ik~l 440 (522)
T PF05701_consen 372 KALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKAS-EALALAEIKAL 440 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh
Confidence 999998888777664 4567788899999988877754433333344333223343 45566666554
No 14
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=84.71 E-value=26 Score=30.78 Aligned_cols=107 Identities=22% Similarity=0.287 Sum_probs=59.5
Q ss_pred cchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhhh
Q 020513 39 EILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKV 118 (325)
Q Consensus 39 e~l~e~V~~l~eEL~rS~Se~~lL~qEle~kE~eLq~sal~IeKLEEsisS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~ 118 (325)
+.|++.|..|.-||-.|--....++-+.+++..+ |+.|++-|+-+|= ....|+.-|..-.+-
T Consensus 20 dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~e-------ie~L~~el~~lt~-----------el~~L~~EL~~l~sE 81 (140)
T PF10473_consen 20 DSLEDHVESLERELEMSQENKECLILDAENSKAE-------IETLEEELEELTS-----------ELNQLELELDTLRSE 81 (140)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence 4455555555556555555544444444443333 3334433333332 223344445444444
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhh
Q 020513 119 HKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDS 163 (325)
Q Consensus 119 q~et~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~ 163 (325)
-+.-.+.-..|.+-|.+|+.-.-+....|.-++.+..++.+-+.+
T Consensus 82 k~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~e~~~~ 126 (140)
T PF10473_consen 82 KENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQLKEESKS 126 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566677777777777777777777777776666665544
No 15
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=84.65 E-value=73 Score=35.63 Aligned_cols=48 Identities=19% Similarity=0.285 Sum_probs=25.0
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHh
Q 020513 232 EKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMT 281 (325)
Q Consensus 232 ~kme~Ms~qi~eyE~LvkQLKeELreEKlKAKEEAEDLtQEMAELRYQmT 281 (325)
..|....+.|........++++.|.--+ .+.+..++..+..+|.-++.
T Consensus 998 ~~i~~l~kel~~~~~~kr~l~dnL~~~~--~~~~l~el~~eI~~l~~~~~ 1045 (1311)
T TIGR00606 998 EDMRLMRQDIDTQKIQERWLQDNLTLRK--RENELKEVEEELKQHLKEMG 1045 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555566666666665443 23334455555555554444
No 16
>PRK01156 chromosome segregation protein; Provisional
Probab=80.45 E-value=81 Score=33.21 Aligned_cols=77 Identities=12% Similarity=0.069 Sum_probs=30.5
Q ss_pred HHHhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHH
Q 020513 70 EERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIEC 149 (325)
Q Consensus 70 E~eLq~sal~IeKLEEsisS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aq~~i~~ 149 (325)
..++...--.|+++...+.++ +.+.-++..++..+-++..-...-...-+.+.+-+.+++-++....+.|..
T Consensus 642 ~~~i~~~~~~i~~l~~~i~~l--------~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~ 713 (895)
T PRK01156 642 KILIEKLRGKIDNYKKQIAEI--------DSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINE 713 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 334434444444444444433 333333334444444433333333333333344444444444444443333
Q ss_pred HHHhh
Q 020513 150 LDKEN 154 (325)
Q Consensus 150 L~ken 154 (325)
+..+.
T Consensus 714 l~eel 718 (895)
T PRK01156 714 LSDRI 718 (895)
T ss_pred HHHHH
Confidence 44333
No 17
>PRK03918 chromosome segregation protein; Provisional
Probab=78.54 E-value=88 Score=32.46 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=16.7
Q ss_pred HHhHHHHHhhHHHHHHHHHHHHH
Q 020513 234 IKGMSLQICEYELLVKQLKEELR 256 (325)
Q Consensus 234 me~Ms~qi~eyE~LvkQLKeELr 256 (325)
+.++..+|.+.+.-++.|+++++
T Consensus 454 ~~~~~~ei~~l~~~~~~l~~~~~ 476 (880)
T PRK03918 454 LEEYTAELKRIEKELKEIEEKER 476 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777777664
No 18
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=78.00 E-value=91 Score=32.88 Aligned_cols=59 Identities=17% Similarity=0.247 Sum_probs=39.2
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 020513 232 EKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEECKRR 291 (325)
Q Consensus 232 ~kme~Ms~qi~eyE~LvkQLKeELreEKlKAKEEAEDLtQEMAELRYQmTglLEEEcKRR 291 (325)
.+|..++.|-+.|..=...-...||...---..++-...+++.++|.+|-.+. +|++.+
T Consensus 408 ~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~-~e~~~K 466 (594)
T PF05667_consen 408 QRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIE-EEIRQK 466 (594)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 55666777777776644444444444444455778888999999999997754 455554
No 19
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=76.79 E-value=73 Score=30.63 Aligned_cols=133 Identities=23% Similarity=0.268 Sum_probs=88.7
Q ss_pred hhhhhhhhhhhhhhhccccchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhHHHHHhhhhccccccccchhh
Q 020513 21 VYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIES 100 (325)
Q Consensus 21 vn~l~EHih~LElKL~~~e~l~e~V~~l~eEL~rS~Se~~lL~qEle~kE~eLq~sal~IeKLEEsisS~tLeSQcEIES 100 (325)
+|.|+.+-..++.=......+..+++++.-++..++.....|..|.+....|+.++.....||| ++-=+-|..--.
T Consensus 14 l~~l~~~eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE----~LCRELQk~Nk~ 89 (309)
T PF09728_consen 14 LNKLSSPEEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLE----SLCRELQKQNKK 89 (309)
T ss_pred HhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 3444444444554445566788889999999999999999999999999999999999999999 665566665555
Q ss_pred hhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhh
Q 020513 101 LKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDS 163 (325)
Q Consensus 101 mKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~ 163 (325)
+|=+...+ +..-...--.=.++..+.|.+.+.++.+-...-.-+..+|..|++||..
T Consensus 90 lkeE~~~~------~~eee~kR~el~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~ 146 (309)
T PF09728_consen 90 LKEESKRR------AREEEEKRKELSEKFQATLKDIQAQMEEQSERNIKLREENEELREKLKS 146 (309)
T ss_pred HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 55322222 1111111222234555666666666666555555577777777777754
No 20
>PRK01156 chromosome segregation protein; Provisional
Probab=76.10 E-value=1.1e+02 Score=32.30 Aligned_cols=65 Identities=6% Similarity=0.162 Sum_probs=36.0
Q ss_pred hhhhhhhhhhhhhhhccccchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhHHHHHh
Q 020513 21 VYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEE 85 (325)
Q Consensus 21 vn~l~EHih~LElKL~~~e~l~e~V~~l~eEL~rS~Se~~lL~qEle~kE~eLq~sal~IeKLEE 85 (325)
+..+..|+-.++..+....+++.++..+..++..-....=-+-.++.....++......++.|+.
T Consensus 175 ~~~~~~ei~~le~~~~~l~~~e~eL~~~~~~i~el~~~~~~l~~~i~~~~~el~~~~~~l~~l~~ 239 (895)
T PRK01156 175 IDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKS 239 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555566666665555555555554445555555555555555555555553
No 21
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=69.85 E-value=96 Score=28.91 Aligned_cols=74 Identities=26% Similarity=0.343 Sum_probs=55.1
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 020513 232 EKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEECKRRACIEQ-ASLQRIAELETQIE 310 (325)
Q Consensus 232 ~kme~Ms~qi~eyE~LvkQLKeELreEKlKAKEEAEDLtQEMAELRYQmTglLEEEcKRRaCIEQ-ASlQrIaELEAQi~ 310 (325)
..|++++++...+..-|-.|..+|-.+.-.+-+.-..+-++...++-+-.. |+.+.. ++. |--.||++||+|+.
T Consensus 75 ~~LK~~~~~~~~l~~~i~~le~~lvd~~~~kd~~i~~~~~~l~~~~~r~~e-l~~~r~----~e~~~YesRI~dLE~~L~ 149 (196)
T PF15272_consen 75 QELKKSSKQSEDLQSRISNLEKQLVDQMIEKDREIRTLQDELLSLELRNKE-LQNERE----RERIAYESRIADLERQLN 149 (196)
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHhHHH----HHHHHHHHHHHHHHHHHH
Confidence 346679999999999999999999777777777778888888766655432 232222 333 45679999999986
No 22
>PRK11637 AmiB activator; Provisional
Probab=65.75 E-value=1.4e+02 Score=29.16 Aligned_cols=28 Identities=14% Similarity=0.256 Sum_probs=10.4
Q ss_pred HHHHHHHhHhHHHHHHHHHHhhHHHHHh
Q 020513 133 IKELEVRTQDSQEIIECLDKENKELKEK 160 (325)
Q Consensus 133 i~Elq~q~q~Aq~~i~~L~kenkeL~ek 160 (325)
|...+.++...+.-|..++.+..+++.+
T Consensus 91 i~~~~~~i~~~~~ei~~l~~eI~~~q~~ 118 (428)
T PRK11637 91 LRETQNTLNQLNKQIDELNASIAKLEQQ 118 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 23
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=65.75 E-value=1.2e+02 Score=33.13 Aligned_cols=110 Identities=23% Similarity=0.190 Sum_probs=63.1
Q ss_pred HHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhh-------HHHHHhhhhccccccccchhhhhhhHHHHHHHHHHHh
Q 020513 44 KVGQLEEELRRSDSECLLLMEELQSKEERLRNSALH-------IKKLEESISSSALESQCEIESLKIDMIALEQTCVEAK 116 (325)
Q Consensus 44 ~V~~l~eEL~rS~Se~~lL~qEle~kE~eLq~sal~-------IeKLEEsisS~tLeSQcEIESmKLD~~aLEQ~lfdA~ 116 (325)
..+-|.-|..+++-.+.+|+++...-+...+.-..+ |.+||+-.-.+ ||.+-++..+.+.+.|++=.-+
T Consensus 483 ~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~l----t~~~~~l~~el~~~~~~le~~k 558 (698)
T KOG0978|consen 483 KNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGL----TSNESKLIKELTTLTQSLEMLK 558 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hHhhhhhHHHHHHHHHHHHHHH
Confidence 344444444555555566666666666666655554 44555554443 5777788888888888876655
Q ss_pred hhhhhhHH-------HHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHH
Q 020513 117 KVHKENVQ-------EKARMNSLIKELEVRTQDSQEIIECLDKENKEL 157 (325)
Q Consensus 117 k~q~et~~-------ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL 157 (325)
+.-.+.-+ +.++-.+.++.++.++.++.--++.+-..++.|
T Consensus 559 k~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rl 606 (698)
T KOG0978|consen 559 KKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRL 606 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54443332 334445556666666666665555443333333
No 24
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=65.67 E-value=1.1e+02 Score=27.95 Aligned_cols=80 Identities=21% Similarity=0.262 Sum_probs=41.6
Q ss_pred HHHHhhhHHHHhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhH
Q 020513 62 LMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQ 141 (325)
Q Consensus 62 L~qEle~kE~eLq~sal~IeKLEEsisS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q 141 (325)
+-.|+..-...+...+....+|+ -++..++.++..+-..+.+..+.....-.+...+.+-+.+.-...-
T Consensus 52 ye~el~~lr~~id~~~~eka~l~-----------~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~ 120 (312)
T PF00038_consen 52 YEEELRELRRQIDDLSKEKARLE-----------LEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARV 120 (312)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhHHhhhhHHHHhhHHh-----------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHh
Confidence 34455555555555555555555 3556667777777777777655444444444444444444333333
Q ss_pred hHHHHHHHHHH
Q 020513 142 DSQEIIECLDK 152 (325)
Q Consensus 142 ~Aq~~i~~L~k 152 (325)
+.+.-|..|..
T Consensus 121 ~le~~i~~L~e 131 (312)
T PF00038_consen 121 DLENQIQSLKE 131 (312)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 25
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=63.38 E-value=1.2e+02 Score=34.53 Aligned_cols=51 Identities=24% Similarity=0.345 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhccchhHHHHHHhH
Q 020513 126 KARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIE 176 (325)
Q Consensus 126 k~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~se~n~r~~~q~~~ 176 (325)
-.++..-|.+++.+...|++.|+.+++..++|.......+++++...+.+.
T Consensus 670 ~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~ 720 (1074)
T KOG0250|consen 670 ASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMT 720 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556778999999999999999999999999999988888876666543
No 26
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=63.32 E-value=36 Score=35.46 Aligned_cols=115 Identities=15% Similarity=0.182 Sum_probs=66.5
Q ss_pred HHHHhhhHHHHhhhhhhhHHHHHhhhhccccc-----cccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH-
Q 020513 62 LMEELQSKEERLRNSALHIKKLEESISSSALE-----SQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKE- 135 (325)
Q Consensus 62 L~qEle~kE~eLq~sal~IeKLEEsisS~tLe-----SQcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~E- 135 (325)
|-.++..-+.++....-.++-||..+.+.||- +..-|=.|+-.+++--+.. .++.-+---.||..+...+..
T Consensus 508 L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~--k~~~l~~L~~En~~L~~~l~~l 585 (722)
T PF05557_consen 508 LQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQI--KKSTLEALQAENEDLLARLRSL 585 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHH--HHHHHHHHHHHHHHHHHHHHhc
Confidence 33455566666666666777777777776654 4455666666666655422 222222222344444444422
Q ss_pred ------------------HHHHhHhHHHHHHHHHHhhHHHHHhhhhccchhHHHHHHhHHH
Q 020513 136 ------------------LEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEEW 178 (325)
Q Consensus 136 ------------------lq~q~q~Aq~~i~~L~kenkeL~ekl~~se~n~r~~~q~~~e~ 178 (325)
.+..+.+.++-|..++|.+.-|++-|...-...|..+.++=+|
T Consensus 586 e~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLkevf~~ks~eFr~av~~llGy 646 (722)
T PF05557_consen 586 EEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRLKEVFKAKSQEFREAVYSLLGY 646 (722)
T ss_dssp TTTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSE
T ss_pred ccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2334567788888888999999988887655555555555444
No 27
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=62.10 E-value=37 Score=28.83 Aligned_cols=6 Identities=100% Similarity=1.237 Sum_probs=5.2
Q ss_pred HHHHHH
Q 020513 301 RIAELE 306 (325)
Q Consensus 301 rIaELE 306 (325)
||||||
T Consensus 134 riaEle 139 (139)
T PF13935_consen 134 RIAELE 139 (139)
T ss_pred HHHhcC
Confidence 999986
No 28
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=61.40 E-value=60 Score=34.77 Aligned_cols=92 Identities=29% Similarity=0.392 Sum_probs=54.7
Q ss_pred cchHHHHHHHHHHHhhccchhHHHHHHhh---------hHHHHhhhhhhhH-----HHHHhhhhccccccccchhhhhhh
Q 020513 39 EILQDKVGQLEEELRRSDSECLLLMEELQ---------SKEERLRNSALHI-----KKLEESISSSALESQCEIESLKID 104 (325)
Q Consensus 39 e~l~e~V~~l~eEL~rS~Se~~lL~qEle---------~kE~eLq~sal~I-----eKLEEsisS~tLeSQcEIESmKLD 104 (325)
.+|+.++..||-||+-.+..+..+-.|++ .++.|.=-|+|+. ..||.|.|.=| -||||
T Consensus 548 ~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEt--------riKld 619 (697)
T PF09726_consen 548 RQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAET--------RIKLD 619 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHH--------HHHHH
Confidence 44557888888888888888777766663 1223333333332 23555555433 34444
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhh
Q 020513 105 MIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLD 162 (325)
Q Consensus 105 ~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~ 162 (325)
||-| +.+-.-|+-.|+..|..=++|+.+|+-|+.
T Consensus 620 -------Lfsa-----------------Lg~akrq~ei~~~~~~~~d~ei~~lk~ki~ 653 (697)
T PF09726_consen 620 -------LFSA-----------------LGDAKRQLEIAQGQLRKKDKEIEELKAKIA 653 (697)
T ss_pred -------HHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 445556666777777777888888877654
No 29
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=60.72 E-value=2.4e+02 Score=30.33 Aligned_cols=137 Identities=19% Similarity=0.213 Sum_probs=79.5
Q ss_pred hhhhhhhhhhhhhhhhhccccchHHHHHHHHHHHh----------------hccchhHH-----HHHHhhhHHHHhhhhh
Q 020513 19 EEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELR----------------RSDSECLL-----LMEELQSKEERLRNSA 77 (325)
Q Consensus 19 ~Evn~l~EHih~LElKL~~~e~l~e~V~~l~eEL~----------------rS~Se~~l-----L~qEle~kE~eLq~sa 77 (325)
.+.-.|..--.+|+=++.+.++.+-+...||+.-. .|.+++|. |=.|++.||.|.++-.
T Consensus 235 ~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq 314 (581)
T KOG0995|consen 235 NEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQ 314 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555554444444444332 35566664 3345666666666555
Q ss_pred hhHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHH
Q 020513 78 LHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKEL 157 (325)
Q Consensus 78 l~IeKLEEsisS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL 157 (325)
-.+.-|--+|-.=. =|--+|+-|-.+-..|.+-+-++.+ +.+++...+|++..+.++--+-|+.+--.-..|
T Consensus 315 ~~~d~Lk~~Ie~Q~-iS~~dve~mn~Er~~l~r~l~~i~~-------~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l 386 (581)
T KOG0995|consen 315 KENDELKKQIELQG-ISGEDVERMNLERNKLKRELNKIQS-------ELDRLSKEVWELKLEIEDFFKELEKKFIDLNSL 386 (581)
T ss_pred HHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555543332211 1445789999999999998877764 567777888888877766655555555455555
Q ss_pred HHhhhh
Q 020513 158 KEKLDS 163 (325)
Q Consensus 158 ~ekl~~ 163 (325)
..++..
T Consensus 387 ~~~i~l 392 (581)
T KOG0995|consen 387 IRRIKL 392 (581)
T ss_pred HHHHHH
Confidence 444443
No 30
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=60.16 E-value=2.8e+02 Score=30.83 Aligned_cols=69 Identities=30% Similarity=0.408 Sum_probs=49.4
Q ss_pred hhhhhhhhhhhhhhhhhcccc------------------chHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhH
Q 020513 19 EEVYSLSEHVHSLELKLVDME------------------ILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHI 80 (325)
Q Consensus 19 ~Evn~l~EHih~LElKL~~~e------------------~l~e~V~~l~eEL~rS~Se~~lL~qEle~kE~eLq~sal~I 80 (325)
.|||.....|--|=.++++.+ .|++.-+...+=|+.|+.++=.|++||...-..||.+.-+-
T Consensus 233 ~E~n~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~~~tq 312 (786)
T PF05483_consen 233 KEVNDKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQESESTQ 312 (786)
T ss_pred HHhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555444433 24555555566799999999999999999999999998888
Q ss_pred HHHHhhh
Q 020513 81 KKLEESI 87 (325)
Q Consensus 81 eKLEEsi 87 (325)
.+|++-+
T Consensus 313 ~~le~~l 319 (786)
T PF05483_consen 313 KALEEDL 319 (786)
T ss_pred HHHHHHH
Confidence 8888543
No 31
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=59.67 E-value=2.7e+02 Score=30.49 Aligned_cols=109 Identities=22% Similarity=0.309 Sum_probs=77.3
Q ss_pred cccchHHHHHHHHHHHhhccchhHHHHHHhhhHH---HHhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHHH
Q 020513 37 DMEILQDKVGQLEEELRRSDSECLLLMEELQSKE---ERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCV 113 (325)
Q Consensus 37 ~~e~l~e~V~~l~eEL~rS~Se~~lL~qEle~kE---~eLq~sal~IeKLEEsisS~tLeSQcEIESmKLD~~aLEQ~lf 113 (325)
+.+.++-+..+||+|++--+.--.-|||+--.-| +-|||.... -=.||-|.||||.++..|+=-.-
T Consensus 70 ~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~-----------Lk~sQvefE~~Khei~rl~Ee~~ 138 (717)
T PF09730_consen 70 ECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSV-----------LKQSQVEFEGLKHEIKRLEEEIE 138 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-----------HHHhHHHHHHHHHHHHHHHHHHH
Confidence 3566778889999999999888888888654444 446665433 33799999999999988863221
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhh
Q 020513 114 EAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDS 163 (325)
Q Consensus 114 dA~k~q~et~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~ 163 (325)
+-.-.++|-.+++.+ .+-|+.+|-+.+..=..+.-.||.-|+.
T Consensus 139 ----~l~~qlee~~rLk~i---ae~qleEALesl~~EReqk~~LrkEL~~ 181 (717)
T PF09730_consen 139 ----LLNSQLEEAARLKEI---AEKQLEEALESLKSEREQKNALRKELDQ 181 (717)
T ss_pred ----HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111123344444443 4678899999999988888889888877
No 32
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=59.25 E-value=2.2e+02 Score=29.69 Aligned_cols=132 Identities=15% Similarity=0.213 Sum_probs=84.3
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhccchhHHHHHHhHHHHhhhhhhh
Q 020513 107 ALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEEWMEKEDRKQ 186 (325)
Q Consensus 107 aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~se~n~r~~~q~~~e~le~ed~~~ 186 (325)
+.+...=.-.+.-+.++.+-+.|+..+.-+...+..-.+-|+.++.+|.-|...- .|-+.++...+.-+..=+
T Consensus 27 ~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~----~N~k~L~~eL~~Ll~~l~--- 99 (701)
T PF09763_consen 27 ESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQS----ANQKLLLNELENLLDTLS--- 99 (701)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHH----HHHHHHHHHHHHHHHhcC---
Confidence 3333333334455788899999999999999999999999999999999886543 366777777776664333
Q ss_pred hhhhhhhhhhhh-ccccccccccchhhhHHHHHHHHHhh----CCCCchHHHHHhHHHHHhhHHHH
Q 020513 187 LDIQSLVSELER-NFTVSKETCFCGKVFGALLSKLALVL----GPDANLKEKIKGMSLQICEYELL 247 (325)
Q Consensus 187 l~~q~~~~~l~~-~~~~s~~~~~c~~~f~~l~~kl~~~~----~~d~~l~~kme~Ms~qi~eyE~L 247 (325)
++. .....|.+ .|+-..+...|..-...|++.|..+- ..++.+ ..|.-...|-..|+.+
T Consensus 100 i~~-~~l~~L~~~~l~~~~~l~~~e~a~~~L~~Al~~i~~~~~~~~~~~-~~M~Av~er~~~~~~~ 163 (701)
T PF09763_consen 100 IPE-EHLEALRNASLSSPDGLEKIEEAAEALYKALKAIRPDLEKLDPGL-GQMRAVKERREEYEKV 163 (701)
T ss_pred CCH-HHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHhcccccccCCCcH-HHHHHHHHHHHHHHHH
Confidence 221 22233333 33333445677666666666665511 112322 3577677777778765
No 33
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=58.90 E-value=2.5e+02 Score=29.92 Aligned_cols=156 Identities=22% Similarity=0.285 Sum_probs=104.0
Q ss_pred hhhhhhHHHhhhhhhhhhhhhhhhhhhhhhhccccchHHHHHHHHHHHhhccc--------------------------h
Q 020513 5 QEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDS--------------------------E 58 (325)
Q Consensus 5 QEIDYLqDQLn~Rn~Evn~l~EHih~LElKL~~~e~l~e~V~~l~eEL~rS~S--------------------------e 58 (325)
+|--++.+|.+-=|.=|-.|..||.-.-.+|...-+-+..-+...+.+--|+- -
T Consensus 258 ~E~~~l~eq~~~ld~AV~~Ltk~v~~~q~sL~kvl~aE~kaR~~k~~~e~sk~eeL~~~L~~~lea~q~agkla~Qe~~~ 337 (531)
T PF15450_consen 258 SEESKLLEQCRKLDEAVAQLTKFVQQNQKSLNKVLNAEQKARDAKEKLEESKAEELATKLQENLEAMQLAGKLAQQETQS 337 (531)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHHHhhhhhHhhhhh
Confidence 34467778888888888888888876666665444444333333333332221 1
Q ss_pred hHHHHHHhhh-HHHHhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHH---HH
Q 020513 59 CLLLMEELQS-KEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSL---IK 134 (325)
Q Consensus 59 ~~lL~qEle~-kE~eLq~sal~IeKLEEsisS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~---i~ 134 (325)
.+=++||... .+.-...++-.|..|..-|+.+.-. +++|--+|...+-+|+. .....+++-|+++ -.
T Consensus 338 ~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~r-------ld~qEqtL~~rL~e~~~--e~~~~~r~~lekl~~~q~ 408 (531)
T PF15450_consen 338 ELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWR-------LDLQEQTLNLRLSEAKN--EWESDERKSLEKLDQWQN 408 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 2234444332 3444556666777777777666543 77888999999999988 4555566655554 56
Q ss_pred HHHHHhHhHHHHHHHHHHhhHHHHHhhhh--ccchhH
Q 020513 135 ELEVRTQDSQEIIECLDKENKELKEKLDS--YETNGR 169 (325)
Q Consensus 135 Elq~q~q~Aq~~i~~L~kenkeL~ekl~~--se~n~r 169 (325)
+.+..+.+-++-|+.|-.++.++..|++. ++.|.|
T Consensus 409 e~~~~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d~k 445 (531)
T PF15450_consen 409 EMEKHLKEVQEKVDSLPQQIEEVSDKCDLHKSDSDTK 445 (531)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhh
Confidence 89999999999999999999999888875 444444
No 34
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=58.79 E-value=4.1e+02 Score=32.35 Aligned_cols=51 Identities=35% Similarity=0.533 Sum_probs=38.6
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHHHHHhh
Q 020513 232 EKIKGMSLQICEYELLVKQLKEELRAEK---FKAKEEAEDLAQEMAELRYQMTS 282 (325)
Q Consensus 232 ~kme~Ms~qi~eyE~LvkQLKeELreEK---lKAKEEAEDLtQEMAELRYQmTg 282 (325)
.-+..+.++|.+...=|+-|.++|..++ -|++..=.||+.|+++|++++--
T Consensus 1090 ~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee 1143 (1930)
T KOG0161|consen 1090 AEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEE 1143 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677788888888888888887665 46666678999999999987643
No 35
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=58.41 E-value=3.8e+02 Score=31.89 Aligned_cols=165 Identities=20% Similarity=0.177 Sum_probs=88.8
Q ss_pred hhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH---HHhHhHHHHHHHHHHhhHHHHHhhhhccchhHHHHHHhHH
Q 020513 101 LKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELE---VRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEE 177 (325)
Q Consensus 101 mKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq---~q~q~Aq~~i~~L~kenkeL~ekl~~se~n~r~~~q~~~e 177 (325)
-|-|+.--|+-+-+|.+--..+-..+..|+.+++-|+ .....|+..|+..+.-...-...|.. +.+
T Consensus 1537 T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~k-----------v~~ 1605 (1758)
T KOG0994|consen 1537 TKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAK-----------VQE 1605 (1758)
T ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-----------HHH
Confidence 3678888888888888888888888888887766554 44556666666555444333333322 111
Q ss_pred HHhhhhhhhhhhhhhhhhhhhcccccc----ccccchhhhHHHHHHHHHhhCCCCchHHHHHhHHHHHhhHHHHHHHHHH
Q 020513 178 WMEKEDRKQLDIQSLVSELERNFTVSK----ETCFCGKVFGALLSKLALVLGPDANLKEKIKGMSLQICEYELLVKQLKE 253 (325)
Q Consensus 178 ~le~ed~~~l~~q~~~~~l~~~~~~s~----~~~~c~~~f~~l~~kl~~~~~~d~~l~~kme~Ms~qi~eyE~LvkQLKe 253 (325)
.+..-....-++-.-.++|+.. |++ -+.+.+.- .-+.+.+-.+.... .-.+.-..+++.|--++++|-+
T Consensus 1606 ~t~~aE~~~~~a~q~~~eL~~~--~e~lk~~~~qns~~A--~~a~~~a~sa~~~A---~~a~q~~~~lq~~~~~~~~l~~ 1678 (1758)
T KOG0994|consen 1606 ETAAAEKLATSATQQLGELETR--MEELKHKAAQNSAEA--KQAEKTAGSAKEQA---LSAEQGLEILQKYYELVDRLLE 1678 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhccHHH--HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 2211111111111111111111 000 00000000 00011100000000 0123344578888888999988
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHhhh
Q 020513 254 ELRAEKFKAKEEAEDLAQEMAELRYQMTSL 283 (325)
Q Consensus 254 ELreEKlKAKEEAEDLtQEMAELRYQmTgl 283 (325)
.--+.-.-|.+-||.|-+|-+.|=||-...
T Consensus 1679 ~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~k 1708 (1758)
T KOG0994|consen 1679 KRMEGSQAARERAEQLRTEAEKLLGQANEK 1708 (1758)
T ss_pred HHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888899999999999999999986544
No 36
>PRK02224 chromosome segregation protein; Provisional
Probab=57.69 E-value=2.5e+02 Score=29.48 Aligned_cols=27 Identities=19% Similarity=0.374 Sum_probs=14.9
Q ss_pred hHHHHHhHHHHHhhHHHHHHHHHHHHH
Q 020513 230 LKEKIKGMSLQICEYELLVKQLKEELR 256 (325)
Q Consensus 230 l~~kme~Ms~qi~eyE~LvkQLKeELr 256 (325)
++..+.++-.++.+.+.-++.++..+.
T Consensus 473 ~~~~~~~~~~~~~~le~~l~~~~~~~e 499 (880)
T PRK02224 473 DRERVEELEAELEDLEEEVEEVEERLE 499 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555566666655555555444
No 37
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=57.43 E-value=3e+02 Score=30.30 Aligned_cols=183 Identities=27% Similarity=0.320 Sum_probs=97.2
Q ss_pred HHhhhHHHHhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhhhhhhhHH---HHHHHHHHHHHHHHHh
Q 020513 64 EELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQ---EKARMNSLIKELEVRT 140 (325)
Q Consensus 64 qEle~kE~eLq~sal~IeKLEEsisS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~q~et~~---ek~~m~~~i~Elq~q~ 140 (325)
.||..|..|+..-.--.+-++ +...|.+=-|+-+|-++.+.+|. +..+|.+.-. +-+.-+..+.-.+.++
T Consensus 294 ~eL~rk~~E~~~~qt~l~~~~----~~~~d~r~hi~~lkesl~~ke~~---~~~Lqsdve~Lr~rle~k~~~l~kk~~~~ 366 (775)
T PF10174_consen 294 LELSRKKSELEALQTRLETLE----EQDSDMRQHIEVLKESLRAKEQE---AEMLQSDVEALRFRLEEKNSQLEKKQAQI 366 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444 33445566677777777777763 3444444322 1222244556666777
Q ss_pred HhHHHHHHHHHHhhHHHHHhhhhccchhHHHHHHhHHHHhh---hhhhhhhhhhhhhhhhhccccccccccchhhhHHHH
Q 020513 141 QDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEEWMEK---EDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALL 217 (325)
Q Consensus 141 q~Aq~~i~~L~kenkeL~ekl~~se~n~r~~~q~~~e~le~---ed~~~l~~q~~~~~l~~~~~~s~~~~~c~~~f~~l~ 217 (325)
..+++=...+.-+..+|++.++..+.-+..+.-+| ++|+. +....+. ..-..... +.+++.
T Consensus 367 ~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~ki-e~Lee~l~ekd~ql~-----~~k~Rl~~-~~d~~~--------- 430 (775)
T PF10174_consen 367 EKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKI-ENLEEQLREKDRQLD-----EEKERLSS-QADSSN--------- 430 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-----HHHHHHhc-cccccc---------
Confidence 77777777777888888888888877666665553 23321 1111122 11111110 111111
Q ss_pred HHHHHhhCCCCchHHHHHhHHHHHhhHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHhh
Q 020513 218 SKLALVLGPDANLKEKIKGMSLQICEYELLVKQLKEELRAEKF-KAKEEAEDLAQEMAELRYQMTS 282 (325)
Q Consensus 218 ~kl~~~~~~d~~l~~kme~Ms~qi~eyE~LvkQLKeELreEKl-KAKEEAEDLtQEMAELRYQmTg 282 (325)
-+.....+=.-+.+++.+++.|.+. |..-- ..+++-+.+-.|+..|+-.+..
T Consensus 431 ------------~~~~~~~lEea~~eker~~e~l~e~-r~~~e~e~~Eele~~~~e~~~lk~~~~~ 483 (775)
T PF10174_consen 431 ------------EDEALETLEEALREKERLQERLEEQ-RERAEKERQEELETYQKELKELKAKLES 483 (775)
T ss_pred ------------hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122234445566777777777644 33322 3346677777777777776654
No 38
>PRK09039 hypothetical protein; Validated
Probab=57.06 E-value=1.9e+02 Score=28.04 Aligned_cols=105 Identities=15% Similarity=0.205 Sum_probs=61.3
Q ss_pred hHHHHHHhhhHHHHhhhhhhhHHHHHhhhh---ccccccccchhhhhhhHHHHHHHHHHHhhhhhhh-------HHHHHH
Q 020513 59 CLLLMEELQSKEERLRNSALHIKKLEESIS---SSALESQCEIESLKIDMIALEQTCVEAKKVHKEN-------VQEKAR 128 (325)
Q Consensus 59 ~~lL~qEle~kE~eLq~sal~IeKLEEsis---S~tLeSQcEIESmKLD~~aLEQ~lfdA~k~q~et-------~~ek~~ 128 (325)
+|||=+++...+.+|......|.-|=+.++ +-+.+.|.+|..+..++.+++..-=.....-... -..-+.
T Consensus 41 q~fLs~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~ 120 (343)
T PRK09039 41 QFFLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGE 120 (343)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHH
Confidence 688889999999998877666665443332 3347778888888888877776544444321111 111222
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhh
Q 020513 129 MNSLIKELEVRTQDSQEIIECLDKENKELKEKLDS 163 (325)
Q Consensus 129 m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~ 163 (325)
+..-+.+.+....+++-.|.-|+.|+..|+..+..
T Consensus 121 l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~ 155 (343)
T PRK09039 121 LAQELDSEKQVSARALAQVELLNQQIAALRRQLAA 155 (343)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555555555555555433
No 39
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=55.89 E-value=51 Score=24.34 Aligned_cols=35 Identities=29% Similarity=0.390 Sum_probs=29.7
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHh
Q 020513 236 GMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMT 281 (325)
Q Consensus 236 ~Ms~qi~eyE~LvkQLKeELreEKlKAKEEAEDLtQEMAELRYQmT 281 (325)
.|+.|+.+.-.+++.||+.+|.+ +.|++-||--|.
T Consensus 5 ~l~~ql~~l~~~l~elk~~l~~Q-----------~kE~~~LRntI~ 39 (45)
T PF11598_consen 5 QLIKQLSELNQMLQELKELLRQQ-----------IKETRFLRNTIM 39 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 57889999999999999999875 678999997663
No 40
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=55.82 E-value=80 Score=34.06 Aligned_cols=75 Identities=19% Similarity=0.350 Sum_probs=48.3
Q ss_pred ccccccchhhhhhhHH--HHHHHHHHHhhhhhhhH--HHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhcc
Q 020513 91 ALESQCEIESLKIDMI--ALEQTCVEAKKVHKENV--QEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYE 165 (325)
Q Consensus 91 tLeSQcEIESmKLD~~--aLEQ~lfdA~k~q~et~--~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~se 165 (325)
|+-+-|++=++++.++ .++++|-+....+-+.+ .-.+++...++.++.+-..=-.-++.|--+.-+|=.+++++.
T Consensus 189 ~I~~l~~~Lg~~~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~l~~~k~qr~~kl~~l~~~~~~LWn~l~ts~ 267 (660)
T KOG4302|consen 189 EIKSLCSVLGLDFSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVKKLKEEKKQRLQKLQDLRTKLLELWNLLDTSD 267 (660)
T ss_pred HHHHHHHHhCCCcccchhhhhhhhhhccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 4456788888888864 59999998876444333 234567777777765543333335666666666766776653
No 41
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=55.48 E-value=1.6e+02 Score=26.71 Aligned_cols=118 Identities=25% Similarity=0.316 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhhhhh-
Q 020513 42 QDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHK- 120 (325)
Q Consensus 42 ~e~V~~l~eEL~rS~Se~~lL~qEle~kE~eLq~sal~IeKLEEsisS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~q~- 120 (325)
.++|+.|++.|++|.-..--+=+.+.-++.+|.+.-..+.+|..-+..=+|.- .+.+-=-+..+++.+-++.+--.
T Consensus 67 ~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~e---ReeL~~kL~~~~~~l~~~~~ki~~ 143 (194)
T PF15619_consen 67 NEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAE---REELQRKLSQLEQKLQEKEKKIQE 143 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999988888888888899999988888888875444334431 22232233334444333322111
Q ss_pred ---hhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhh
Q 020513 121 ---ENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLD 162 (325)
Q Consensus 121 ---et~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~ 162 (325)
..--.+.-.+..+.-......+|+..+..|..++..|.-++.
T Consensus 144 Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klk 188 (194)
T PF15619_consen 144 LEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLK 188 (194)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111122222333334445555555566666555555443
No 42
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=54.19 E-value=94 Score=24.44 Aligned_cols=34 Identities=41% Similarity=0.545 Sum_probs=29.6
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhc
Q 020513 131 SLIKELEVRTQDSQEIIECLDKENKELKEKLDSY 164 (325)
Q Consensus 131 ~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~s 164 (325)
.++..|+.+++.|=.+|..|..+|.+|+++-...
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L 37 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNEL 37 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4678899999999999999999999999975554
No 43
>PF07160 DUF1395: Protein of unknown function (DUF1395); InterPro: IPR009829 This family consists of several hypothetical eukaryotic proteins of around 250 residues in length. The function of this family is unknown.; PDB: 4AJ5_G.
Probab=54.05 E-value=45 Score=31.08 Aligned_cols=61 Identities=25% Similarity=0.413 Sum_probs=48.7
Q ss_pred CCCCchHHHHHhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHH
Q 020513 225 GPDANLKEKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEE 286 (325)
Q Consensus 225 ~~d~~l~~kme~Ms~qi~eyE~LvkQLKeELreEKlKAKEEAEDLtQEMAELRYQmTglLEE 286 (325)
++|+++++.|..+.+.+...+.++..++..|+.++. +-..+..|.+=|-+.-+.+.+|.+.
T Consensus 15 ~~~~~~~~~L~~i~~~~~~i~~~l~~~~~~l~~~~~-~~~~lk~l~~~~~~~~~~l~hl~~n 75 (243)
T PF07160_consen 15 GQDPNLKDTLSKIDQEVSAIEELLNDIEQELQREEE-ALPKLKELMESSEEQQKKLQHLKEN 75 (243)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999999984 6666666666666666666666554
No 44
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=52.66 E-value=1.6e+02 Score=26.67 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhh
Q 020513 244 YELLVKQLKEELRAEKFKAKE 264 (325)
Q Consensus 244 yE~LvkQLKeELreEKlKAKE 264 (325)
-+.+..+....|.+-+.+|.+
T Consensus 103 Ae~~~~~ye~~L~~Ar~eA~~ 123 (204)
T PRK09174 103 ADAAVAAYEQELAQARAKAHS 123 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444443333
No 45
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=52.21 E-value=2.8e+02 Score=28.38 Aligned_cols=170 Identities=21% Similarity=0.258 Sum_probs=94.5
Q ss_pred hhhHHHhhhhhhhhhhhhhhhhhhhhhhccccc--hHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhh-------
Q 020513 8 DYLQDQLNARNEEVYSLSEHVHSLELKLVDMEI--LQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSAL------- 78 (325)
Q Consensus 8 DYLqDQLn~Rn~Evn~l~EHih~LElKL~~~e~--l~e~V~~l~eEL~rS~Se~~lL~qEle~kE~eLq~sal------- 78 (325)
|=|.-+|.--+.+...-.+-.+-.-+.+.+++. -.......+.||-...+++-..+.||++--.||++--.
T Consensus 72 eel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~~~~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~ 151 (522)
T PF05701_consen 72 EELKLKLEKAQAEEKQAEEDSELAKFRAKELEQGIAEEASVAWKAELESAREQYASAVAELDSVKQELEKLRQELASALD 151 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444443333433333333333444444422 12223336777777778888888888887777765322
Q ss_pred ----hHHHHHhhhhccccccccchhhhhhhHHHH-------HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHH
Q 020513 79 ----HIKKLEESISSSALESQCEIESLKIDMIAL-------EQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEII 147 (325)
Q Consensus 79 ----~IeKLEEsisS~tLeSQcEIESmKLD~~aL-------EQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aq~~i 147 (325)
.+.+-+++++....- -=.|+.|...+.+| ..+..+|.+-.-....+++ .....++..+..|++.+
T Consensus 152 ~k~~A~~~aeea~~~a~~~-~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~---~~~~~~~~~leeae~~l 227 (522)
T PF05701_consen 152 AKNAALKQAEEAVSAAEEN-EEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAERE---QDAEEWEKELEEAEEEL 227 (522)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 233334444333221 12344555555544 4444555543333333333 45556777788899999
Q ss_pred HHHHHhh---HHHHHhhhhccchhHHHHHHhHHHHhh
Q 020513 148 ECLDKEN---KELKEKLDSYETNGRVFCQKIEEWMEK 181 (325)
Q Consensus 148 ~~L~ken---keL~ekl~~se~n~r~~~q~~~e~le~ 181 (325)
..|..+. +.|..+|.........+...+..+.++
T Consensus 228 ~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~ 264 (522)
T PF05701_consen 228 EELKEELEAAKDLESKLAEASAELESLQAELEAAKES 264 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888876 777888888766666666666666653
No 46
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=52.14 E-value=2.3e+02 Score=27.36 Aligned_cols=60 Identities=22% Similarity=0.294 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhh
Q 020513 104 DMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDS 163 (325)
Q Consensus 104 D~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~ 163 (325)
|+-.++..+....|-++....+++.+.+=..-....-..-+..-.-|.++|+.+++....
T Consensus 37 e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~ 96 (309)
T PF09728_consen 37 EMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKR 96 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666666555555554433322222223333334455666666654443
No 47
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=50.30 E-value=33 Score=26.33 Aligned_cols=40 Identities=30% Similarity=0.395 Sum_probs=33.5
Q ss_pred HHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhccchhHHHH
Q 020513 133 IKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFC 172 (325)
Q Consensus 133 i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~se~n~r~~~ 172 (325)
|.|++..+....-.|..+.+||.++++-+..-+.|.+.+.
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll 41 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVKDLL 41 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888899999999999998888877876554
No 48
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=50.13 E-value=1.6e+02 Score=31.64 Aligned_cols=75 Identities=19% Similarity=0.216 Sum_probs=36.0
Q ss_pred hhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHH---HhhHHHHHhhhhccchhHHHH
Q 020513 98 IESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLD---KENKELKEKLDSYETNGRVFC 172 (325)
Q Consensus 98 IESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~---kenkeL~ekl~~se~n~r~~~ 172 (325)
|..++--+..|.+.+-+++.--.+...+....-..+..+.-++-++....---. .++++|...+.--..|+|+||
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnIRV~C 320 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGNIRVFC 320 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCceEEE
Confidence 344444444555554444433333333333333333333333333333333223 566677666666677888885
No 49
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=48.42 E-value=4.9e+02 Score=30.10 Aligned_cols=222 Identities=25% Similarity=0.324 Sum_probs=107.8
Q ss_pred hhhHHHhhhhhhhhhhhhhhhhhhhhhhccccchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhHHHHHhhh
Q 020513 8 DYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESI 87 (325)
Q Consensus 8 DYLqDQLn~Rn~Evn~l~EHih~LElKL~~~e~l~e~V~~l~eEL~rS~Se~~lL~qEle~kE~eLq~sal~IeKLEEsi 87 (325)
|--+..+..--.++..|.-|+-..+-++..++.+++.-..++- | -.+=+|-..-+. +.+|...--.|-+.++-+
T Consensus 224 ~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~-L--k~k~~W~~V~~~---~~ql~~~~~~i~~~qek~ 297 (1074)
T KOG0250|consen 224 DHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQ-L--KAKMAWAWVNEV---ERQLNNQEEEIKKKQEKV 297 (1074)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4445555666677888888888888888877776665544432 1 123367665443 344555445555555555
Q ss_pred hcccc---ccccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhc
Q 020513 88 SSSAL---ESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSY 164 (325)
Q Consensus 88 sS~tL---eSQcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~s 164 (325)
+.++= +-+-.|+++--+++..|..+=. -.++-+.++.=|+++.-.++++ ..+--+++++..-+
T Consensus 298 ~~l~~ki~~~~~k~~~~r~k~teiea~i~~-------~~~e~~~~d~Ei~~~r~~~~~~-------~re~~~~~~~~~~~ 363 (1074)
T KOG0250|consen 298 DTLQEKIEEKQGKIEEARQKLTEIEAKIGE-------LKDEVDAQDEEIEEARKDLDDL-------RREVNDLKEEIREI 363 (1074)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHH-------HHHhhhhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 44321 2234455555555555443322 2233333333332222222222 22222222222222
Q ss_pred cchhHHHHHHhHHHHhhhhhhhhhhhhhhhhhhhccccccccccchhhh-HHHHHHHHHhhCCCCchHHHHHhHHHHHhh
Q 020513 165 ETNGRVFCQKIEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVF-GALLSKLALVLGPDANLKEKIKGMSLQICE 243 (325)
Q Consensus 165 e~n~r~~~q~~~e~le~ed~~~l~~q~~~~~l~~~~~~s~~~~~c~~~f-~~l~~kl~~~~~~d~~l~~kme~Ms~qi~e 243 (325)
..+++...... +++ . +++++- .+-+ ..+=+. =....++++.+.+++..
T Consensus 364 ~n~i~~~k~~~-d~l--------~-----k~I~~~----------~~~~~~~~~~~-------~~e~e~k~~~L~~evek 412 (1074)
T KOG0250|consen 364 ENSIRKLKKEV-DRL--------E-----KQIADL----------EKQTNNELGSE-------LEERENKLEQLKKEVEK 412 (1074)
T ss_pred HHHHHHHHHHH-HHH--------H-----HHHHHH----------HHHHHhhhhhh-------HHHHHHHHHHHHHHHHH
Confidence 22222111000 000 0 000000 0000 000011 11223678889999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHH---HHHHHHHHHH
Q 020513 244 YELLVKQLKEELRAEKFKAKEEAEDLA---QEMAELRYQM 280 (325)
Q Consensus 244 yE~LvkQLKeELreEKlKAKEEAEDLt---QEMAELRYQm 280 (325)
.+.++.+|++++.+=+-+++++-+.+. -+..-||.++
T Consensus 413 ~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i 452 (1074)
T KOG0250|consen 413 LEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKI 452 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 999999999999988888776665552 3445555544
No 50
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=47.73 E-value=1.8e+02 Score=25.51 Aligned_cols=24 Identities=13% Similarity=0.207 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHH
Q 020513 244 YELLVKQLKEELRAEKFKAKEEAE 267 (325)
Q Consensus 244 yE~LvkQLKeELreEKlKAKEEAE 267 (325)
|+..+.+.+.|-++-.-+|+.+|+
T Consensus 88 ye~~L~~Ar~EA~~ii~~A~~ea~ 111 (181)
T PRK13454 88 YNKALADARAEAQRIVAETRAEIQ 111 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 51
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=47.70 E-value=28 Score=33.23 Aligned_cols=87 Identities=22% Similarity=0.248 Sum_probs=65.7
Q ss_pred ccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhccchhHHHHHH
Q 020513 95 QCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQK 174 (325)
Q Consensus 95 QcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~se~n~r~~~q~ 174 (325)
-++|+-++--+..+++.+-.|..--++.-.+-+.++..|..++.+..++..-...|..+......++..+.+=+..+...
T Consensus 213 ~~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E 292 (344)
T PF12777_consen 213 NKEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGE 292 (344)
T ss_dssp CCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcch
Confidence 34666777777777778888877777777788888888888888888888888888888888888888875544444444
Q ss_pred hHHHHhh
Q 020513 175 IEEWMEK 181 (325)
Q Consensus 175 ~~e~le~ 181 (325)
...|-++
T Consensus 293 ~~RW~~~ 299 (344)
T PF12777_consen 293 KERWSEQ 299 (344)
T ss_dssp HHCCHCH
T ss_pred hhhHHHH
Confidence 4555543
No 52
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=47.64 E-value=4.5e+02 Score=29.54 Aligned_cols=78 Identities=32% Similarity=0.466 Sum_probs=56.2
Q ss_pred HHHHhHHHHHhhHHHHHHHH---HHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---HHHHHHHHH
Q 020513 232 EKIKGMSLQICEYELLVKQL---KEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEECKRRACIEQ---ASLQRIAEL 305 (325)
Q Consensus 232 ~kme~Ms~qi~eyE~LvkQL---KeELreEKlKAKEEAEDLtQEMAELRYQmTglLEEEcKRRaCIEQ---ASlQrIaEL 305 (325)
..++.-...+.+|+.-++.. .+.+++++-..+.+..++.++.++|+-+++....+==.+|+=+++ +.=+.+.++
T Consensus 788 ~~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~ 867 (1201)
T PF12128_consen 788 KRIEERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEELKALEEQLEQL 867 (1201)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677788888888776 567888999999999999999999999888776655555665643 333444455
Q ss_pred HHHH
Q 020513 306 ETQI 309 (325)
Q Consensus 306 EAQi 309 (325)
++.+
T Consensus 868 ~~~l 871 (1201)
T PF12128_consen 868 EEQL 871 (1201)
T ss_pred HHHH
Confidence 5544
No 53
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=46.37 E-value=2.9e+02 Score=26.98 Aligned_cols=158 Identities=20% Similarity=0.221 Sum_probs=81.1
Q ss_pred HHHHhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHH
Q 020513 69 KEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIE 148 (325)
Q Consensus 69 kE~eLq~sal~IeKLEEsisS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aq~~i~ 148 (325)
-|+..+++-.+--.|.--=+++ ..+|.-+|=.+..+|..++...+--.+-+-+-.++. ..++
T Consensus 89 vEekyrkAMv~naQLDNek~~l----~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K--------------~~~d 150 (302)
T PF09738_consen 89 VEEKYRKAMVSNAQLDNEKSAL----MYQVDLLKDKLEELEETLAQLQREYREKIRELERQK--------------RAHD 150 (302)
T ss_pred HHHHHHHHHHHHhhhchHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHH
Confidence 3445556655555555333333 356777777777788777776654443333333333 3444
Q ss_pred HHHHhhHHHHHhhhhc----cchhHHHHHHhHHHHhhhhhhhhhhhhhhhhhhhccccccccccchhhhHHHHHHHHHhh
Q 020513 149 CLDKENKELKEKLDSY----ETNGRVFCQKIEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVL 224 (325)
Q Consensus 149 ~L~kenkeL~ekl~~s----e~n~r~~~q~~~e~le~ed~~~l~~q~~~~~l~~~~~~s~~~~~c~~~f~~l~~kl~~~~ 224 (325)
+|..+..+|++.+... +.+|-++ .+...+++..+..+ ..+.+.+..|-..-+..|.-
T Consensus 151 ~L~~e~~~Lre~L~~rdeli~khGlVl----------------v~~~~ngd~~~~~~-~~~~~~~~~vs~e~a~~L~~-- 211 (302)
T PF09738_consen 151 SLREELDELREQLKQRDELIEKHGLVL----------------VPDATNGDTSDEPN-NVGHPKRALVSQEAAQLLES-- 211 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCeee----------------CCCCCCCccccCcc-ccCCCcccccchhhhhhhcc--
Confidence 4444444444444332 1122111 10001111111100 00122222232334445554
Q ss_pred CCCCchHHHHHhHHHHHhhHHHHHHHHHHHHHHHhhhhh
Q 020513 225 GPDANLKEKIKGMSLQICEYELLVKQLKEELRAEKFKAK 263 (325)
Q Consensus 225 ~~d~~l~~kme~Ms~qi~eyE~LvkQLKeELreEKlKAK 263 (325)
++++.|-..+.+++.--.+.-.-|+.||..|-+.+-+.+
T Consensus 212 aG~g~LDvRLkKl~~eke~L~~qv~klk~qLee~~~~~~ 250 (302)
T PF09738_consen 212 AGDGSLDVRLKKLADEKEELLEQVRKLKLQLEERQSEGR 250 (302)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 368888788888887777777779999999976655444
No 54
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=45.92 E-value=1.6e+02 Score=25.87 Aligned_cols=110 Identities=23% Similarity=0.346 Sum_probs=39.9
Q ss_pred cchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhhh
Q 020513 39 EILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKV 118 (325)
Q Consensus 39 e~l~e~V~~l~eEL~rS~Se~~lL~qEle~kE~eLq~sal~IeKLEEsisS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~ 118 (325)
..++..+..+++||-..--.+=-+.+-|-....+++..-..+.... =.|..+.-....|+..+-+=
T Consensus 70 ~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~-----------~~l~~l~~~~~~L~~~~~~l--- 135 (194)
T PF08614_consen 70 SSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKE-----------RRLAELEAELAQLEEKIKDL--- 135 (194)
T ss_dssp --------------------------------------------HH-----------HHHHHHHHHHHHHHHHHHHH---
T ss_pred cccccccccccccccccccccccccccccccccccchhhhhHHHHH-----------HHHHHHHHHHHHHHHHHHHH---
Confidence 4567788888888876655555566655555555544333333333 23445555566666655432
Q ss_pred hhhhHHHHHHHHHHHH----HHHHHhHhHHHHHHHHHHhhHHHHHhhhh
Q 020513 119 HKENVQEKARMNSLIK----ELEVRTQDSQEIIECLDKENKELKEKLDS 163 (325)
Q Consensus 119 q~et~~ek~~m~~~i~----Elq~q~q~Aq~~i~~L~kenkeL~ekl~~ 163 (325)
++.+.++++....+. -++.+.--+++-..-|++||++|=+++-.
T Consensus 136 -~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 136 -EEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555554443 35667777788888888888888666544
No 55
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=45.00 E-value=2.8e+02 Score=26.40 Aligned_cols=64 Identities=22% Similarity=0.192 Sum_probs=38.0
Q ss_pred hccccccccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 020513 88 SSSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLD 151 (325)
Q Consensus 88 sS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~ 151 (325)
+.++...+=+++++|-.+..+...+=.=++-..+.-.+....+..|.++..+.++.+.-|..++
T Consensus 201 ~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 201 EEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355566677778887777777666544444445555555555555555555555555555444
No 56
>PHA03325 nuclear-egress-membrane-like protein; Provisional
Probab=44.75 E-value=11 Score=38.35 Aligned_cols=71 Identities=30% Similarity=0.362 Sum_probs=46.1
Q ss_pred hhhhHHHhhhhhhhhhhhhhhhhhhhhhhccccchHHHHHHHHHHHhhccchhHH--HHHHhhhHHHHhhhhhhhH
Q 020513 7 IDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLL--LMEELQSKEERLRNSALHI 80 (325)
Q Consensus 7 IDYLqDQLn~Rn~Evn~l~EHih~LElKL~~~e~l~e~V~~l~eEL~rS~Se~~l--L~qEle~kE~eLq~sal~I 80 (325)
.+||+|||--|=-|=--||+|||.| +-|.+-++-.+-...|--=|+.- -|+. =|.=+-.-..=+|.+.+.|
T Consensus 155 v~YlRdeLtkRCge~S~Lg~~i~~l-i~lvd~erhrdLc~vLvGmlhQT--PHMWaRSIRLl~rLk~f~Qn~fl~l 227 (418)
T PHA03325 155 VAYLRDELTKRCGEGSRLGEHIRQL-ISLVDHERHRDLCHVLVGMLHQT--PHMWARSIRLLGRLKIFYQNSFLKL 227 (418)
T ss_pred HHHHHHHHHHHhcccchhhhHHHHH-HHhcChhhhhhHHHHHHHHhhcC--hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999998 66777776665555554444322 2221 0111223345567776655
No 57
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=44.61 E-value=75 Score=27.93 Aligned_cols=77 Identities=30% Similarity=0.366 Sum_probs=53.5
Q ss_pred Hhhhhhhhhhhhhhhhhhhhhhhcc------------------ccchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhh
Q 020513 13 QLNARNEEVYSLSEHVHSLELKLVD------------------MEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLR 74 (325)
Q Consensus 13 QLn~Rn~Evn~l~EHih~LElKL~~------------------~e~l~e~V~~l~eEL~rS~Se~~lL~qEle~kE~eLq 74 (325)
.|..--.+...|..||.+||-.|.. ...|.+++..+..+|.+...+=-.|..|-++-..+||
T Consensus 11 kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq 90 (140)
T PF10473_consen 11 KLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQ 90 (140)
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555677788888888766643 3446777777777777777777777777777777777
Q ss_pred hhhhhHHHHHhhhhc
Q 020513 75 NSALHIKKLEESISS 89 (325)
Q Consensus 75 ~sal~IeKLEEsisS 89 (325)
+---.|.-||-+.||
T Consensus 91 ~~q~kv~eLE~~~~~ 105 (140)
T PF10473_consen 91 KKQEKVSELESLNSS 105 (140)
T ss_pred HHHHHHHHHHHHhHH
Confidence 777777777755444
No 58
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=44.38 E-value=4.2e+02 Score=28.25 Aligned_cols=71 Identities=35% Similarity=0.390 Sum_probs=38.2
Q ss_pred hhhhhhhhhhhhhhhhhhccccchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhHHHHHhhhhccc
Q 020513 18 NEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSA 91 (325)
Q Consensus 18 n~Evn~l~EHih~LElKL~~~e~l~e~V~~l~eEL~rS~Se~~lL~qEle~kE~eLq~sal~IeKLEEsisS~t 91 (325)
..++-.|.++|..|+--|.....=-+....-..++..+ .=.+-+|.+.-..++..+.-.|.+||+-|-++|
T Consensus 163 e~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~---~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~ 233 (546)
T PF07888_consen 163 EEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTES---SEELKEERESLKEQLAEARQRIRELEEDIKTLT 233 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777665543332222222222333322 123556666666667777777888886555443
No 59
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=44.15 E-value=5.6e+02 Score=29.57 Aligned_cols=204 Identities=20% Similarity=0.232 Sum_probs=95.7
Q ss_pred ccchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHHH-HHh
Q 020513 38 MEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCV-EAK 116 (325)
Q Consensus 38 ~e~l~e~V~~l~eEL~rS~Se~~lL~qEle~kE~eLq~sal~IeKLEEsisS~tLeSQcEIESmKLD~~aLEQ~lf-dA~ 116 (325)
-..+.+-|+.+.+.|+--.|+--.|=--+...|.++|+---.|--+++- -=+.--|||+..-.+-.|||+|- .|.
T Consensus 87 triyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d----~ke~etelE~~~srlh~le~eLsAk~~ 162 (1265)
T KOG0976|consen 87 TRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDD----KKENEIEIENLNSRLHKLEDELSAKAH 162 (1265)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHHHHHhhhhH
Confidence 3456667777888888777764444333333444444444445555522 22345678888888888888873 122
Q ss_pred hh---hhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhcc-chhHHHHHHhHHHHhhhhhhhhhhhhh
Q 020513 117 KV---HKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYE-TNGRVFCQKIEEWMEKEDRKQLDIQSL 192 (325)
Q Consensus 117 k~---q~et~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~se-~n~r~~~q~~~e~le~ed~~~l~~q~~ 192 (325)
-| .+.--.-+..++.+=.+++-.+-+|-. +++.|..+-++|+..- .|-.. .+...+- +.++|-+
T Consensus 163 eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~----en~~le~k~~k~~e~~~~nD~~-sle~~~~-------q~~tq~v 230 (1265)
T KOG0976|consen 163 DIFMIGEDLHDKNEELNEFNMEFQTKLAEANR----EKKALEEKLEKFKEDLIEKDQK-SLELHKD-------QENTQKV 230 (1265)
T ss_pred HHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhcchHH-HHHHHHH-------HHHHHHH
Confidence 22 222222333344444444444444433 3333333333332210 01110 1111111 1122222
Q ss_pred hhhh----hhccccccccccchh------hhHHHHHHHHHhhCCCCchHHHHHhHHHHHhhHHHHHHHHHHHHHHHhh
Q 020513 193 VSEL----ERNFTVSKETCFCGK------VFGALLSKLALVLGPDANLKEKIKGMSLQICEYELLVKQLKEELRAEKF 260 (325)
Q Consensus 193 ~~~l----~~~~~~s~~~~~c~~------~f~~l~~kl~~~~~~d~~l~~kme~Ms~qi~eyE~LvkQLKeELreEKl 260 (325)
.++. .+.-+|....-+|.. +..++.+.+.. .-..|+.|=.-+....-+.+++||-++++|-..|-
T Consensus 231 l~ev~QLss~~q~ltp~rk~~s~i~E~d~~lq~sak~ieE---~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkq 305 (1265)
T KOG0976|consen 231 LKEVMQLSSQKQTLTPLRKTCSMIEEQDMDLQASAKEIEE---KMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQ 305 (1265)
T ss_pred HHHHHHHHHhHhhhhhHhhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 1110 001112222234432 12222333322 22345556666778888999999999999987763
No 60
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=43.84 E-value=1.5e+02 Score=25.27 Aligned_cols=45 Identities=31% Similarity=0.353 Sum_probs=30.0
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHHHH---HHhhhhhhHHHHHHHHHHHH
Q 020513 232 EKIKGMSLQICEYELLVKQLKEELR---AEKFKAKEEAEDLAQEMAEL 276 (325)
Q Consensus 232 ~kme~Ms~qi~eyE~LvkQLKeELr---eEKlKAKEEAEDLtQEMAEL 276 (325)
..++.|+.+|+..+-=+-.||+++. .+|-.+-+|-=.|+.+..++
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999998888888764 33444444444444444444
No 61
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=42.35 E-value=3.8e+02 Score=29.85 Aligned_cols=75 Identities=29% Similarity=0.411 Sum_probs=54.4
Q ss_pred hhhHHHhhhhhhhhhhhhhhhhhhhhhhccccchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhHHHHHhhh
Q 020513 8 DYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESI 87 (325)
Q Consensus 8 DYLqDQLn~Rn~Evn~l~EHih~LElKL~~~e~l~e~V~~l~eEL~rS~Se~~lL~qEle~kE~eLq~sal~IeKLEEsi 87 (325)
+-|+=|++.=..-|-.=||-|.+||+=+++.. +-|-++|+-||.-.+++--||
T Consensus 121 esL~LQvsvLteqVeaQgEKIrDLE~cie~kr------------------------~kLnatEEmLQqellsrtsLE--- 173 (861)
T KOG1899|consen 121 ESLQLQVSVLTEQVEAQGEKIRDLETCIEEKR------------------------NKLNATEEMLQQELLSRTSLE--- 173 (861)
T ss_pred hhheehHHHHHHHHHHhhhhHHHHHHHHHHHH------------------------hhhchHHHHHHHHHHhhhhHH---
Confidence 34455555555556666888888887665432 125577888888888887777
Q ss_pred hccccccccchhhhhhhHHHHHH
Q 020513 88 SSSALESQCEIESLKIDMIALEQ 110 (325)
Q Consensus 88 sS~tLeSQcEIESmKLD~~aLEQ 110 (325)
+=-||---||-++||-.++||.
T Consensus 174 -TqKlDLmaevSeLKLkltalEk 195 (861)
T KOG1899|consen 174 -TQKLDLMAEVSELKLKLTALEK 195 (861)
T ss_pred -HHHhHHHHHHHHhHHHHHHHHH
Confidence 6777888899999999999984
No 62
>PRK04863 mukB cell division protein MukB; Provisional
Probab=42.25 E-value=6.4e+02 Score=29.76 Aligned_cols=186 Identities=17% Similarity=0.188 Sum_probs=80.5
Q ss_pred hhccchhHHHHHHhhhHHHHhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhhhhhhhH------HHH
Q 020513 53 RRSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENV------QEK 126 (325)
Q Consensus 53 ~rS~Se~~lL~qEle~kE~eLq~sal~IeKLEEsisS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~q~et~------~ek 126 (325)
++...+-.-+++|.-....+...+.-.+++-+..+..+.- .+..++=-+..|+.-.=.|.+++.... .+.
T Consensus 275 ~r~~eERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~d----iL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei 350 (1486)
T PRK04863 275 MRHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMAR----ELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKI 350 (1486)
T ss_pred hhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566666644445555554444444433333221 122333334444444444444433221 222
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhccchhHHHHHHhHHHHhhhhhhhhhhhhhhhhhhhcccccccc
Q 020513 127 ARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEEWMEKEDRKQLDIQSLVSELERNFTVSKET 206 (325)
Q Consensus 127 ~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~se~n~r~~~q~~~e~le~ed~~~l~~q~~~~~l~~~~~~s~~~ 206 (325)
......+++++.+++.....+..+..+..++...+...+.-...+.....+.....+..+-....+...+.. ..+..
T Consensus 351 ~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~---Le~~~ 427 (1486)
T PRK04863 351 ERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQA---LERAK 427 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 333444555555555555555555554444444444433333333222222222222222221111111111 11223
Q ss_pred ccchhhhHHHHHHHHHhhCCCCchHHHHHhHHHHHhhHHHHHHHHHHHHH
Q 020513 207 CFCGKVFGALLSKLALVLGPDANLKEKIKGMSLQICEYELLVKQLKEELR 256 (325)
Q Consensus 207 ~~c~~~f~~l~~kl~~~~~~d~~l~~kme~Ms~qi~eyE~LvkQLKeELr 256 (325)
..|| +..-+|.+|...+...+.++.+++.-+..++.++.
T Consensus 428 ~~~~-----------~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~ 466 (1486)
T PRK04863 428 QLCG-----------LPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLS 466 (1486)
T ss_pred HHhC-----------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3454 00115566777777777777777766666665554
No 63
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=41.89 E-value=6.9e+02 Score=29.99 Aligned_cols=209 Identities=17% Similarity=0.202 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHhhhhhhh---HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhccchhHHHHHHhHHHHhh
Q 020513 105 MIALEQTCVEAKKVHKEN---VQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEEWMEK 181 (325)
Q Consensus 105 ~~aLEQ~lfdA~k~q~et---~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~se~n~r~~~q~~~e~le~ 181 (325)
.+.-.+|+--|+-.+..- ..+-.+..+.|.+-..+--+|+.-.+-...+-+--+.+...++.-.+.++|.+.++|.+
T Consensus 1407 ~t~A~~A~~~A~~~~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Flt~ 1486 (1758)
T KOG0994|consen 1407 VTRAGGALLMAGDADTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANASRSQMEESNRELRNLIQQVRDFLTQ 1486 (1758)
T ss_pred hcccchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344566666666555443 34445566777888888888888888887777778888888888888899999999999
Q ss_pred hhhhhhhhhhhhh-hhhhccccccccccchhhhHHHHHHHHH------hh---CCCCchHHHHHhHHHHHhhHHHHHHHH
Q 020513 182 EDRKQLDIQSLVS-ELERNFTVSKETCFCGKVFGALLSKLAL------VL---GPDANLKEKIKGMSLQICEYELLVKQL 251 (325)
Q Consensus 182 ed~~~l~~q~~~~-~l~~~~~~s~~~~~c~~~f~~l~~kl~~------~~---~~d~~l~~kme~Ms~qi~eyE~LvkQL 251 (325)
++.++-.++-+.. +|.-.++.+.+.-.- +-++|-..++- ++ .+|..--+.+..-|..-...-..|++-
T Consensus 1487 ~~adp~si~~vA~~vL~l~lp~tpeqi~~--L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ 1564 (1758)
T KOG0994|consen 1487 PDADPDSIEEVAEEVLALELPLTPEQIQQ--LTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQ 1564 (1758)
T ss_pred CCCCHHHHHHHHHHHHhccCCCCHHHHHH--HHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 9888877665543 333333333221100 12222221111 11 122222233444444444444555554
Q ss_pred HHHHHH---HhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhccc
Q 020513 252 KEELRA---EKFKAKEEAEDLAQEMAELRYQMTSLLEEECKRRACIE---QASLQRIAELETQIEKGQNK 315 (325)
Q Consensus 252 KeELre---EKlKAKEEAEDLtQEMAELRYQmTglLEEEcKRRaCIE---QASlQrIaELEAQi~ke~~k 315 (325)
-++.++ +--+|--+|.|-.|+...--.+..-+|+.=-.+-+=.| +++-||+.+||+-++.-+.|
T Consensus 1565 ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~ 1634 (1758)
T KOG0994|consen 1565 AEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHK 1634 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443 23344445555554433222222223322222222223 56779999999988665433
No 64
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=41.70 E-value=3e+02 Score=25.82 Aligned_cols=99 Identities=22% Similarity=0.340 Sum_probs=71.5
Q ss_pred HHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhhhhh-------hhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHh
Q 020513 81 KKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHK-------ENVQEKARMNSLIKELEVRTQDSQEIIECLDKE 153 (325)
Q Consensus 81 eKLEEsisS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~q~-------et~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~ke 153 (325)
..+...++++.--|...+.++.-|+..|+..+-..+..=. ........|...+.+...++...++....+...
T Consensus 259 ~~~~~eL~~v~~a~~~~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~~~~f~~~~~~~~~~l~~~~~~~~~~ 338 (370)
T PF02181_consen 259 LDLEDELSSVEKASKVSLDELEQDIKELEKGLEKIKKELEAIEKDEEDDDKFKEKMKEFLEEAETKLDELQELYEELEEA 338 (370)
T ss_dssp GGHHHHTTTHHHCCTS-HHHHHHHHHHHHHHHHHHHHHHHHCCTTSSTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777888889999999999988877665422 234467889999999999999888888888888
Q ss_pred hHHHHHhhhh--ccchhHHHHHHhHHHH
Q 020513 154 NKELKEKLDS--YETNGRVFCQKIEEWM 179 (325)
Q Consensus 154 nkeL~ekl~~--se~n~r~~~q~~~e~l 179 (325)
-+.+..-+.. +..++..|+..+...+
T Consensus 339 ~~~~~~yfge~~~~~~~~~ff~~l~~F~ 366 (370)
T PF02181_consen 339 FKQLLQYFGEDPKKMSPEEFFKILSQFI 366 (370)
T ss_dssp HHHHHHHTT--TTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHH
Confidence 8888888754 2346666666655544
No 65
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=41.60 E-value=1.3e+02 Score=29.36 Aligned_cols=92 Identities=25% Similarity=0.307 Sum_probs=50.9
Q ss_pred HHHHHhhhHHHHhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhhh------hhhhHHHHHHHHHHHH
Q 020513 61 LLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKV------HKENVQEKARMNSLIK 134 (325)
Q Consensus 61 lL~qEle~kE~eLq~sal~IeKLEEsisS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~------q~et~~ek~~m~~~i~ 134 (325)
.++++|++.-.. .|+-.+|.+-++-+ -.++|+++++.-|-+.|-++-.. ++-...+++.+++.+.
T Consensus 133 ~IIqeLq~t~~~----~LS~~dl~e~~~~l-----~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~ 203 (269)
T PF05278_consen 133 DIIQELQSTPLK----ELSESDLKEMIATL-----KDLESAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLE 203 (269)
T ss_pred HHHHHHhcCcHh----hhhHHHHHHHHHHH-----HHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777553211 23444444433332 36889999999888887654332 2234456666666655
Q ss_pred HHHHHhHhHHHHHHHHHHhhHHHHHhh
Q 020513 135 ELEVRTQDSQEIIECLDKENKELKEKL 161 (325)
Q Consensus 135 Elq~q~q~Aq~~i~~L~kenkeL~ekl 161 (325)
.....+-..++-....+++.++++.++
T Consensus 204 ~~~~ELe~~~EeL~~~Eke~~e~~~~i 230 (269)
T PF05278_consen 204 LKKEELEELEEELKQKEKEVKEIKERI 230 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555444555555555555555544
No 66
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=41.14 E-value=3.9e+02 Score=28.82 Aligned_cols=56 Identities=23% Similarity=0.133 Sum_probs=38.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhccchhHHHHHHh
Q 020513 116 KKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKI 175 (325)
Q Consensus 116 ~k~q~et~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~se~n~r~~~q~~ 175 (325)
+.|-+..-.+-+-+..+=.-+.-+.++--.-|+.|..+|..|-++...+ +...|.+
T Consensus 242 ~~fl~~~~~~~~~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea----~k~s~~i 297 (622)
T COG5185 242 KSFLKLEDNYEPSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEA----MKISQKI 297 (622)
T ss_pred HHHhcCCCccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 5566665555555555555566677788888889999999998888765 4444554
No 67
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=40.45 E-value=5.2e+02 Score=28.20 Aligned_cols=132 Identities=27% Similarity=0.364 Sum_probs=90.4
Q ss_pred hhhhhhhhhhhhhhhhhccccchHHHHHHHHHHHhhccchhHHHHH------------HhhhHHH----HhhhhhhhHHH
Q 020513 19 EEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLME------------ELQSKEE----RLRNSALHIKK 82 (325)
Q Consensus 19 ~Evn~l~EHih~LElKL~~~e~l~e~V~~l~eEL~rS~Se~~lL~q------------Ele~kE~----eLq~sal~IeK 82 (325)
.|-..|-+-+-+++=.+++....+..|..|.+.+..-.+..---+. +...++. +.++-.-+++.
T Consensus 121 ~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~ 200 (629)
T KOG0963|consen 121 EENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEE 200 (629)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666667777777778888888877777665544332222 1122222 23445678888
Q ss_pred HHhhhhccccccccchhhhhhhHHHHHHHHHHHhhh-hhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhh
Q 020513 83 LEESISSSALESQCEIESLKIDMIALEQTCVEAKKV-HKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKL 161 (325)
Q Consensus 83 LEEsisS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~-q~et~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl 161 (325)
+|.+|+++ --++-+---.+|+++.. ++++.-..+..+=+..+|. +|+..|..|+.++..|++-+
T Consensus 201 le~ki~~l-----------q~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe----~aq~ri~~lE~e~e~L~~ql 265 (629)
T KOG0963|consen 201 LEKKISSL-----------QSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELE----DAQQRIVFLEREVEQLREQL 265 (629)
T ss_pred HHHHHHHH-----------HHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 99888764 33334444568888887 8888888888888888765 78999999999999999888
Q ss_pred hhcc
Q 020513 162 DSYE 165 (325)
Q Consensus 162 ~~se 165 (325)
...+
T Consensus 266 ~~~N 269 (629)
T KOG0963|consen 266 AKAN 269 (629)
T ss_pred Hhhh
Confidence 7653
No 68
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=40.22 E-value=3.6e+02 Score=26.63 Aligned_cols=53 Identities=30% Similarity=0.345 Sum_probs=45.7
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhc
Q 020513 112 CVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSY 164 (325)
Q Consensus 112 lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~s 164 (325)
.-+-+-.-++++.||.-+..-+.+++-.+.+-++-++.|+.+|-.|.++++..
T Consensus 137 ~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l 189 (290)
T COG4026 137 YEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKL 189 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445545788999999999999999999999999999999999999988875
No 69
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=39.75 E-value=2.8e+02 Score=29.96 Aligned_cols=32 Identities=22% Similarity=0.352 Sum_probs=20.9
Q ss_pred chHHHHHhHHHHHhhHHHHHHHHHHHHHHHhh
Q 020513 229 NLKEKIKGMSLQICEYELLVKQLKEELRAEKF 260 (325)
Q Consensus 229 ~l~~kme~Ms~qi~eyE~LvkQLKeELreEKl 260 (325)
+.++-++.|..++..+.--|+++|.-+.-++.
T Consensus 636 ~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~ 667 (717)
T PF10168_consen 636 EFKKELERMKDQLQDLKASIEQLKKKLDYQQR 667 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777777777766655443
No 70
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=39.08 E-value=3e+02 Score=25.03 Aligned_cols=37 Identities=35% Similarity=0.311 Sum_probs=30.2
Q ss_pred HHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhccchh
Q 020513 132 LIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNG 168 (325)
Q Consensus 132 ~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~se~n~ 168 (325)
-|.+|+.++.+++.-++-+..||+=|+..-..-++..
T Consensus 13 ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL 49 (194)
T PF15619_consen 13 KIKELQNELAELQRKLQELRKENKTLKQLQKRQEKAL 49 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999987655543333
No 71
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=38.74 E-value=4.6e+02 Score=27.08 Aligned_cols=119 Identities=26% Similarity=0.321 Sum_probs=65.8
Q ss_pred HHHHHHhHHHHhhhhhhhhhhhhhhhhhhhccccccccccchhhhHHHHHHHHHhhCCCCchHHHHHhHHHHHhhHHH-H
Q 020513 169 RVFCQKIEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPDANLKEKIKGMSLQICEYEL-L 247 (325)
Q Consensus 169 r~~~q~~~e~le~ed~~~l~~q~~~~~l~~~~~~s~~~~~c~~~f~~l~~kl~~~~~~d~~l~~kme~Ms~qi~eyE~-L 247 (325)
|-.+.++++++..-++....+|...+.|.+. ..| |.+. ..+. .+||+..++..|-.. |
T Consensus 88 r~i~es~~e~q~e~~qL~~qnqkL~nqL~~~----------~~v----f~k~----k~~~---q~LE~li~~~~EEn~~l 146 (401)
T PF06785_consen 88 RKIRESVEERQQESEQLQSQNQKLKNQLFHV----------REV----FMKT----KGDI---QHLEGLIRHLREENQCL 146 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH----------HHH----HHHh----cchH---HHHHHHHHHHHHHHHHH
Confidence 4457778888877677777777777777766 212 2222 1121 456665555433221 1
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHh
Q 020513 248 VKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEECKRRACIEQASLQ-----RIAELETQIEK 311 (325)
Q Consensus 248 vkQLKeELreEKlKAKEEAEDLtQEMAELRYQmTglLEEEcKRRaCIEQASlQ-----rIaELEAQi~k 311 (325)
=-|| +++..+--...||+-.|-+|.||-+.-.+-+.+ ||- -.-+||+|.- -|.+||+.|+.
T Consensus 147 qlqL-~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~-eyQ-atf~eq~~ml~kRQ~yI~~LEsKVqD 212 (401)
T PF06785_consen 147 QLQL-DALQQECGEKEEESQTLNRELAEALAYQQELND-EYQ-ATFVEQHSMLDKRQAYIGKLESKVQD 212 (401)
T ss_pred HHhH-HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH-Hhh-cccccchhhhHHHHHHHHHHHHHHHH
Confidence 1111 222333333457889999999985444444444 442 2334555543 37888888864
No 72
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=38.41 E-value=2.5e+02 Score=23.94 Aligned_cols=68 Identities=32% Similarity=0.459 Sum_probs=38.0
Q ss_pred hhhhhhhhhhhhhhhhccccchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhHHHHHhhhhcc
Q 020513 20 EVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESISSS 90 (325)
Q Consensus 20 Evn~l~EHih~LElKL~~~e~l~e~V~~l~eEL~rS~Se~~lL~qEle~kE~eLq~sal~IeKLEEsisS~ 90 (325)
++.....++-.|+ .++++++..+..+..++...+...-.+.+.++..+.+++.....+..+.+.+.-+
T Consensus 82 e~~~~~~~l~~l~---~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l 149 (191)
T PF04156_consen 82 ELSELQQQLQQLQ---EELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIREL 149 (191)
T ss_pred hHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444 3344456666666666666555555555666677777766666666666544433
No 73
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=37.93 E-value=1e+02 Score=30.65 Aligned_cols=46 Identities=30% Similarity=0.595 Sum_probs=34.1
Q ss_pred HhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhh----HHHHHHH
Q 020513 241 ICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSL----LEEECKR 290 (325)
Q Consensus 241 i~eyE~LvkQLKeELreEKlKAKEEAEDLtQEMAELRYQmTgl----LEEEcKR 290 (325)
.++-|+-|.-||--|+|---+- .|=--|+.|||-|++-| +||||-|
T Consensus 63 LQQKEV~iRHLkakLkes~~~l----~dRetEI~eLksQL~RMrEDWIEEECHR 112 (305)
T PF15290_consen 63 LQQKEVCIRHLKAKLKESENRL----HDRETEIDELKSQLARMREDWIEEECHR 112 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888888888777643222 23446899999999876 8899998
No 74
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=37.80 E-value=3.7e+02 Score=25.63 Aligned_cols=130 Identities=22% Similarity=0.273 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhccchhHHH---HHHhHHHHhhhhhhhhhhhhhhhhhhhccc
Q 020513 125 EKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVF---CQKIEEWMEKEDRKQLDIQSLVSELERNFT 201 (325)
Q Consensus 125 ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~se~n~r~~---~q~~~e~le~ed~~~l~~q~~~~~l~~~~~ 201 (325)
+-+.+++-|.=++..+-+||+-..|+-..++++..--+-+++..+++ .++.++.++..+.+.-.++..--.-.+.
T Consensus 5 ~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK-- 82 (205)
T KOG1003|consen 5 DVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRK-- 82 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_pred cccccccchhhhHHHHHH------------------------HHHhhCCCCchHHHHHhHHHHHhhHHHHHHHHHHHHHH
Q 020513 202 VSKETCFCGKVFGALLSK------------------------LALVLGPDANLKEKIKGMSLQICEYELLVKQLKEELRA 257 (325)
Q Consensus 202 ~s~~~~~c~~~f~~l~~k------------------------l~~~~~~d~~l~~kme~Ms~qi~eyE~LvkQLKeELre 257 (325)
|.+|...|..+ +.+|-+.-..|..+-+..+.+-..|+..||-|-+-||+
T Consensus 83 -------~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkE 155 (205)
T KOG1003|consen 83 -------YEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKE 155 (205)
T ss_pred -------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Q ss_pred Hhhhhh
Q 020513 258 EKFKAK 263 (325)
Q Consensus 258 EKlKAK 263 (325)
--.+|.
T Consensus 156 aE~rAE 161 (205)
T KOG1003|consen 156 AETRAE 161 (205)
T ss_pred hhhhHH
No 75
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=37.56 E-value=1.1e+02 Score=28.97 Aligned_cols=53 Identities=19% Similarity=0.100 Sum_probs=36.4
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhccc
Q 020513 111 TCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYET 166 (325)
Q Consensus 111 ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~se~ 166 (325)
..++--.-.....+||++++.-+.++..+++.+ ...+..||+.||..|.....
T Consensus 60 ~~~~~~~~~~~l~~EN~~Lr~e~~~l~~~~~~~---~~~l~~EN~rLr~LL~~~~~ 112 (283)
T TIGR00219 60 GISENLKDVNNLEYENYKLRQELLKKNQQLEIL---TQNLKQENVRLRELLNSPLS 112 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCccc
Confidence 334433444567788898888877775555543 23389999999999988643
No 76
>PF06582 DUF1136: Repeat of unknown function (DUF1136); InterPro: IPR010939 This family consists of several eukaryote specific repeats of unknown function. This repeat seems to always be found with IPR007110 from INTERPRO.
Probab=37.32 E-value=23 Score=23.64 Aligned_cols=13 Identities=46% Similarity=0.606 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHH
Q 020513 297 ASLQRIAELETQI 309 (325)
Q Consensus 297 ASlQrIaELEAQi 309 (325)
.||++|++||+--
T Consensus 9 ~~lekIq~LE~~~ 21 (28)
T PF06582_consen 9 ESLEKIQELEDPS 21 (28)
T ss_pred HHHHHHHHHHccc
Confidence 4899999999854
No 77
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.20 E-value=4e+02 Score=25.94 Aligned_cols=74 Identities=16% Similarity=0.170 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhccchhHHHHHHhHHHH
Q 020513 106 IALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEEWM 179 (325)
Q Consensus 106 ~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~se~n~r~~~q~~~e~l 179 (325)
.+=+..+=++.+=+...-.+-+.|.+.|.+++.+.++.++-|+.+..+.++|..+++..+-|++.--..+.+|+
T Consensus 34 ~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~ra 107 (265)
T COG3883 34 QNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRA 107 (265)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555566778888888888888888888888888888898888888888877777777776
No 78
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=37.08 E-value=1e+02 Score=26.40 Aligned_cols=45 Identities=24% Similarity=0.403 Sum_probs=39.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 020513 272 EMAELRYQMTSLLEEECKRRACIEQASLQRIAELETQIEKGQNKFV 317 (325)
Q Consensus 272 EMAELRYQmTglLEEEcKRRaCIEQASlQrIaELEAQi~ke~~k~~ 317 (325)
|=|||+++|. .||-|+|.=-.+-..=.-||.-||..++.+..|..
T Consensus 26 ERaEmkarIa-~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~ 70 (134)
T PF08232_consen 26 ERAEMKARIA-FLEGERRGQENLKKDLKRRIKMLEYALKQERAKYK 70 (134)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5689999995 68999999999999999999999999998887644
No 79
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=36.68 E-value=5.6e+02 Score=27.41 Aligned_cols=62 Identities=18% Similarity=0.238 Sum_probs=46.9
Q ss_pred CCCCchHHHHHhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHH
Q 020513 225 GPDANLKEKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEE 286 (325)
Q Consensus 225 ~~d~~l~~kme~Ms~qi~eyE~LvkQLKeELreEKlKAKEEAEDLtQEMAELRYQmTglLEE 286 (325)
++=..|+.++-+.-.++.-.+-.|.-|+-.|.+++--=-....|.--+|+++|-+||.++=|
T Consensus 303 ~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~E 364 (546)
T KOG0977|consen 303 SRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVE 364 (546)
T ss_pred hcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 34455677777777777777777777888887777666666777778999999999988743
No 80
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=36.61 E-value=2.6e+02 Score=30.51 Aligned_cols=87 Identities=24% Similarity=0.335 Sum_probs=65.2
Q ss_pred hHHHHhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhhh--hhhhHHHHHH-HHHHHHHHHHHhHhHH
Q 020513 68 SKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKV--HKENVQEKAR-MNSLIKELEVRTQDSQ 144 (325)
Q Consensus 68 ~kE~eLq~sal~IeKLEEsisS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~--q~et~~ek~~-m~~~i~Elq~q~q~Aq 144 (325)
..+.++.+---.+++|++-+|++ +-+|+-||=-+..|+-.|=.++.- ++.-..-.-+ +++-|..|+..+.+..
T Consensus 419 ~~~~~i~~~~~~ve~l~~e~~~L----~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~ 494 (652)
T COG2433 419 VYEKRIKKLEETVERLEEENSEL----KRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKK 494 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666667788888888876 468999999999999988665432 2222222233 7788999999999999
Q ss_pred HHHHHHHHhhHHHH
Q 020513 145 EIIECLDKENKELK 158 (325)
Q Consensus 145 ~~i~~L~kenkeL~ 158 (325)
+.|+.|+....+|+
T Consensus 495 ~~ve~L~~~l~~l~ 508 (652)
T COG2433 495 KRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888886
No 81
>PRK10884 SH3 domain-containing protein; Provisional
Probab=36.42 E-value=2.8e+02 Score=25.53 Aligned_cols=34 Identities=26% Similarity=0.381 Sum_probs=25.1
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhc
Q 020513 131 SLIKELEVRTQDSQEIIECLDKENKELKEKLDSY 164 (325)
Q Consensus 131 ~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~s 164 (325)
....+++..+.++...|..|+.+|.+|++.+...
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~ 151 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVA 151 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666667777888999999998888764
No 82
>PRK00182 tatB sec-independent translocase; Provisional
Probab=36.32 E-value=2.6e+02 Score=25.51 Aligned_cols=56 Identities=14% Similarity=0.227 Sum_probs=39.3
Q ss_pred HHHHHHhhCCCCchHHHHHhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 020513 217 LSKLALVLGPDANLKEKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAE 275 (325)
Q Consensus 217 ~~kl~~~~~~d~~l~~kme~Ms~qi~eyE~LvkQLKeELreEKlKAKEEAEDLtQEMAE 275 (325)
+-.+++++..-.+|-+-+..+++=|.+....++..|+++++|- ..|.+|+-..+.+
T Consensus 13 IlvIaLlVfGPerLP~~~r~lg~~ir~~R~~~~~~k~el~~El---g~e~~elrk~l~~ 68 (160)
T PRK00182 13 LLIVGLIVIGPERLPRLIEDVRAALLAARTAINNAKQQLDGDF---GEEFDEFRKPLNQ 68 (160)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHH
Confidence 3344555566667888889999999999999999999998862 2344455444443
No 83
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=35.99 E-value=8e+02 Score=29.02 Aligned_cols=99 Identities=21% Similarity=0.319 Sum_probs=60.3
Q ss_pred HHhhhHHHHhhhhhhhHHHHHhhhhccccccc-----------------cchhhhhhhHHHHHHHHHHHhhhhhhhHHHH
Q 020513 64 EELQSKEERLRNSALHIKKLEESISSSALESQ-----------------CEIESLKIDMIALEQTCVEAKKVHKENVQEK 126 (325)
Q Consensus 64 qEle~kE~eLq~sal~IeKLEEsisS~tLeSQ-----------------cEIESmKLD~~aLEQ~lfdA~k~q~et~~ek 126 (325)
..++++..++.++--.|++|+--|...|.-.+ -+|+-+.=...+|.+-+-+.+....+.-.+-
T Consensus 900 e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~ 979 (1293)
T KOG0996|consen 900 EKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEY 979 (1293)
T ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34455555555555556666555555443211 1233333333445555555555555555555
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHH-hhh
Q 020513 127 ARMNSLIKELEVRTQDSQEIIECLDKENKELKE-KLD 162 (325)
Q Consensus 127 ~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~e-kl~ 162 (325)
..-...++|+.-++++....++.+.+.--+|+. +++
T Consensus 980 ~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId 1016 (1293)
T KOG0996|consen 980 KEAEESLKEIKKELRDLKSELENIKKSENELKAERID 1016 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 566778999999999999999999888888865 544
No 84
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=35.32 E-value=1.1e+02 Score=27.77 Aligned_cols=63 Identities=25% Similarity=0.472 Sum_probs=32.6
Q ss_pred hhhHHHhhhhhhhhhhhhhhhhhhhhhhccccc----hHHHHHHHHHHHhhccchhHHHHHHhhhHH
Q 020513 8 DYLQDQLNARNEEVYSLSEHVHSLELKLVDMEI----LQDKVGQLEEELRRSDSECLLLMEELQSKE 70 (325)
Q Consensus 8 DYLqDQLn~Rn~Evn~l~EHih~LElKL~~~e~----l~e~V~~l~eEL~rS~Se~~lL~qEle~kE 70 (325)
+|+--++.-..++-.-+.++|-.||-|+.++.. +-......+.|+.|..|.+=-+=+++..-|
T Consensus 113 k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e 179 (190)
T PF05266_consen 113 KKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAE 179 (190)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556665666666677777777777665544 222233333444444444444444433333
No 85
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=35.18 E-value=3e+02 Score=23.78 Aligned_cols=69 Identities=26% Similarity=0.326 Sum_probs=47.6
Q ss_pred hhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhccc
Q 020513 98 IESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYET 166 (325)
Q Consensus 98 IESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~se~ 166 (325)
+.+||++-.+.-...=.|..--...-+.+.+...-|..|+...+..+.-++.++....+.+.++..++.
T Consensus 2 m~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~ 70 (143)
T PF12718_consen 2 MQALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEK 70 (143)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 346777766666666566666666666777777777777777777777777777777777777766543
No 86
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=34.29 E-value=6.8e+02 Score=27.69 Aligned_cols=113 Identities=28% Similarity=0.314 Sum_probs=75.8
Q ss_pred ccchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhh
Q 020513 38 MEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKK 117 (325)
Q Consensus 38 ~e~l~e~V~~l~eEL~rS~Se~~lL~qEle~kE~eLq~sal~IeKLEEsisS~tLeSQcEIESmKLD~~aLEQ~lfdA~k 117 (325)
......++.++.=||-+.+++.+-+=-+|++......-.--+|++|-+|+.+. +-+.+-+--|+-+|-..|=.+..
T Consensus 282 ~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~k----e~~~~~Lqsdve~Lr~rle~k~~ 357 (775)
T PF10174_consen 282 SLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAK----EQEAEMLQSDVEALRFRLEEKNS 357 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHHHHHHH
Confidence 33344558899999999999999999999999999888899999999888764 22334455666666666655544
Q ss_pred hh-------hhhHHHHHHHHHHHHHHH-------HHhHhHHHHHHHHHHhh
Q 020513 118 VH-------KENVQEKARMNSLIKELE-------VRTQDSQEIIECLDKEN 154 (325)
Q Consensus 118 ~q-------~et~~ek~~m~~~i~Elq-------~q~q~Aq~~i~~L~ken 154 (325)
.- .....+++++.+=|.++. ..+...+.-|+.|+..+
T Consensus 358 ~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l 408 (775)
T PF10174_consen 358 QLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQL 408 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 334556666555554443 34444555565555444
No 87
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=34.27 E-value=6.1e+02 Score=27.13 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhh
Q 020513 123 VQEKARMNSLIKELEVRTQDSQEIIECLDKEN 154 (325)
Q Consensus 123 ~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~ken 154 (325)
+.+|..++.++++.+.++.+.++.+..+..+.
T Consensus 107 v~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~ 138 (617)
T PF15070_consen 107 VENNEQLSRLNQEQEERLAELEEELERLQEQQ 138 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666655555554433
No 88
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=33.83 E-value=2e+02 Score=23.62 Aligned_cols=85 Identities=22% Similarity=0.366 Sum_probs=48.7
Q ss_pred hhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhhhhhhhH----HHHHHHHHHHHHHHHHhHhHHHHHHHH
Q 020513 75 NSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENV----QEKARMNSLIKELEVRTQDSQEIIECL 150 (325)
Q Consensus 75 ~sal~IeKLEEsisS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~q~et~----~ek~~m~~~i~Elq~q~q~Aq~~i~~L 150 (325)
-.-.-|+.|++.|+++|. |-|++-.... -..-.+...=.+-+=++ .-.+.+...+..++-+++.++..++.+
T Consensus 24 ~~~~Di~~Lq~~i~~vtf---~~l~~e~~~~-~~dp~~~klfrLaQl~ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l 99 (118)
T PF13815_consen 24 VRELDIDTLQENIENVTF---CDLENEDCQH-FVDPNFLKLFRLAQLSIEYLLHCQEYLSSQLEQLEERLQELQQEIEKL 99 (118)
T ss_pred HhccCHHHHHHHHHhcce---eccChhhccC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678899999999987 6666654332 01111111111222222 224456666777777777777777777
Q ss_pred HHhhHHHHHhhhh
Q 020513 151 DKENKELKEKLDS 163 (325)
Q Consensus 151 ~kenkeL~ekl~~ 163 (325)
...++++.+++..
T Consensus 100 ~~~~~~~~~~~k~ 112 (118)
T PF13815_consen 100 KQKLKKQKEEIKK 112 (118)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777665543
No 89
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=33.27 E-value=1.6e+02 Score=23.24 Aligned_cols=58 Identities=17% Similarity=0.242 Sum_probs=38.5
Q ss_pred chhhhhhhHHHHHHHHHH-HhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhh
Q 020513 97 EIESLKIDMIALEQTCVE-AKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKEN 154 (325)
Q Consensus 97 EIESmKLD~~aLEQ~lfd-A~k~q~et~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~ken 154 (325)
|-=++||-+--||+++=. +....+..+.+|-.+.--+..++-.++.-++.+..+++.+
T Consensus 15 ENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~ 73 (75)
T PF07989_consen 15 ENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEKAI 73 (75)
T ss_pred hhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445789999999999974 3444555566666666666666666666666665555443
No 90
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=32.92 E-value=1.8e+02 Score=25.22 Aligned_cols=17 Identities=24% Similarity=0.231 Sum_probs=8.4
Q ss_pred CCCchHHHHHhHHHHHh
Q 020513 226 PDANLKEKIKGMSLQIC 242 (325)
Q Consensus 226 ~d~~l~~kme~Ms~qi~ 242 (325)
.-..++++++.+.+|..
T Consensus 126 ~l~~~~~~~~~~~kq~~ 142 (192)
T PF05529_consen 126 ELIKLEEKLEALKKQAE 142 (192)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444555555555544
No 91
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=32.75 E-value=2.4e+02 Score=28.72 Aligned_cols=93 Identities=22% Similarity=0.318 Sum_probs=61.8
Q ss_pred cccchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHH-----HH
Q 020513 37 DMEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALE-----QT 111 (325)
Q Consensus 37 ~~e~l~e~V~~l~eEL~rS~Se~~lL~qEle~kE~eLq~sal~IeKLEEsisS~tLeSQcEIESmKLD~~aLE-----Q~ 111 (325)
++..+.+.+..|.+.+-+-+.+ +..++.---.-||.-..-.+.|||-+..+|===|-||.-+|=++...| |+
T Consensus 220 el~eik~~~~~L~~~~e~Lk~~---~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs 296 (395)
T PF10267_consen 220 ELREIKESQSRLEESIEKLKEQ---YQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMAYQS 296 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3344444445555544444433 334444455567777788999999999999888999999999888777 66
Q ss_pred HHHHhhhhhhhHHHHHHHHHH
Q 020513 112 CVEAKKVHKENVQEKARMNSL 132 (325)
Q Consensus 112 lfdA~k~q~et~~ek~~m~~~ 132 (325)
.=-|+.+++---.-.+||.++
T Consensus 297 ~eRaRdi~E~~Es~qtRiskl 317 (395)
T PF10267_consen 297 YERARDIWEVMESCQTRISKL 317 (395)
T ss_pred HHHHhHHHHHHHHHHHHHHHH
Confidence 666666666555555666554
No 92
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=32.68 E-value=6.7e+02 Score=27.12 Aligned_cols=31 Identities=32% Similarity=0.466 Sum_probs=14.4
Q ss_pred HHHHHHHhHhHHHHHHHHHHhhHHHHHhhhh
Q 020513 133 IKELEVRTQDSQEIIECLDKENKELKEKLDS 163 (325)
Q Consensus 133 i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~ 163 (325)
+.+++..+..+.+.+..+.+.+..+..+...
T Consensus 370 ~~~l~~~~~~~le~~~~~~~~~~~~~~~~~~ 400 (908)
T COG0419 370 LEELEKELEKALERLKQLEEAIQELKEELAE 400 (908)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444555555544444433
No 93
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=32.43 E-value=5.9e+02 Score=26.42 Aligned_cols=206 Identities=19% Similarity=0.236 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHH-----------HHHHhhHHHHHhhhhccchhHHHH
Q 020513 104 DMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIE-----------CLDKENKELKEKLDSYETNGRVFC 172 (325)
Q Consensus 104 D~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aq~~i~-----------~L~kenkeL~ekl~~se~n~r~~~ 172 (325)
.+..|++.+-++..-.+...++-+.+..-+.+++.+++++...+. .|+.+.+.++..+.......+.+.
T Consensus 210 ~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~ 289 (650)
T TIGR03185 210 EIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRELA 289 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred -------------HHhHHHHhhhhhhhhhhhhhhhhhhhccccccccccchhh---------hHHHHHHHHHhhC-CCCc
Q 020513 173 -------------QKIEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKV---------FGALLSKLALVLG-PDAN 229 (325)
Q Consensus 173 -------------q~~~e~le~ed~~~l~~q~~~~~l~~~~~~s~~~~~c~~~---------f~~l~~kl~~~~~-~d~~ 229 (325)
..+..-++.+.... ..+.....+.+. ..+-|+.+ ...|...|.-... ....
T Consensus 290 ~~~~p~~l~~~ll~~~~~q~~~e~~~~-~~~~~~~~l~~~-----~~~i~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~ 363 (650)
T TIGR03185 290 ADPLPLLLIPNLLDSTKAQLQKEEQSQ-QNQLTQEELEER-----DKELLESLPKLALPAEHVKEIAAELAEIDKPATTD 363 (650)
T ss_pred cccCCHhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-----HHHHHHHHhhccCCHHHHHHHHHHHHhhccccccc
Q ss_pred hHHHHHhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 020513 230 LKEKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEECKRRACIEQASLQR-IAELETQ 308 (325)
Q Consensus 230 l~~kme~Ms~qi~eyE~LvkQLKeELreEKlKAKEEAEDLtQEMAELRYQmTglLEEEcKRRaCIEQASlQr-IaELEAQ 308 (325)
..-.+.-....+.....++.++.........+...+...+..|++++.-++.+.=.+|--..-=-+-..+++ |.+++++
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~ 443 (650)
T TIGR03185 364 SEIPHRLSGSELTQLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAE 443 (650)
T ss_pred ccccccCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhccc
Q 020513 309 IEKGQNK 315 (325)
Q Consensus 309 i~ke~~k 315 (325)
+..-..+
T Consensus 444 ~~~~~~~ 450 (650)
T TIGR03185 444 IEELLRQ 450 (650)
T ss_pred HHHHHHH
No 94
>PRK11032 hypothetical protein; Provisional
Probab=30.80 E-value=69 Score=28.78 Aligned_cols=37 Identities=30% Similarity=0.351 Sum_probs=23.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHh-------hhhhh---HHHHHHHHH
Q 020513 237 MSLQICEYELLVKQLKEELRAEK-------FKAKE---EAEDLAQEM 273 (325)
Q Consensus 237 Ms~qi~eyE~LvkQLKeELreEK-------lKAKE---EAEDLtQEM 273 (325)
|.++...|+.++.++++-|+.-. -+|++ .|.|||++=
T Consensus 1 ~~k~~~~Y~~ll~~v~~~l~~~~~~l~~~ve~a~~~~~~~~elT~dE 47 (160)
T PRK11032 1 MNKVAQYYRELVASLTERLRNGERDIDALVESARKRVDAAGELTRDE 47 (160)
T ss_pred CchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 56777888888888888776633 23333 566666653
No 95
>PF02416 MttA_Hcf106: mttA/Hcf106 family; InterPro: IPR003369 Members of this protein family are involved in a sec-independent translocation mechanism. This pathway has been called the DeltapH pathway in chloroplasts []. Members of this family in Escherichia coli are involved in export of redox proteins with a "twin arginine" leader motif (S/T-R-R-X-F-L-K) []. This sec-independent pathway is termed TAT for twin-arginine translocation system. This system mainly transports proteins with bound cofactors that require folding prior to export.; GO: 0008565 protein transporter activity, 0015031 protein transport; PDB: 2L16_A.
Probab=30.57 E-value=1.8e+02 Score=21.49 Aligned_cols=42 Identities=26% Similarity=0.347 Sum_probs=28.2
Q ss_pred HHHHHHhhCCCCchHHHHHhHHHHHhhHHHHHHHHHHHHHHH
Q 020513 217 LSKLALVLGPDANLKEKIKGMSLQICEYELLVKQLKEELRAE 258 (325)
Q Consensus 217 ~~kl~~~~~~d~~l~~kme~Ms~qi~eyE~LvkQLKeELreE 258 (325)
+-.+++++..-.+|-+-+.++++-+.++..-++..+++.+.+
T Consensus 9 I~vvalllfGp~kLP~~~r~lG~~ir~fk~~~~~~~~~~~~~ 50 (53)
T PF02416_consen 9 ILVVALLLFGPKKLPELARSLGKAIREFKKAINEAKEEIEKE 50 (53)
T ss_dssp HHHHHHHHS-TTTHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 334455556667799999999999999988888888886544
No 96
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=29.71 E-value=5.4e+02 Score=25.47 Aligned_cols=57 Identities=26% Similarity=0.403 Sum_probs=38.7
Q ss_pred hHHHHHHHHHhhCCCCchHHHHHhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 020513 213 FGALLSKLALVLGPDANLKEKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAEL 276 (325)
Q Consensus 213 f~~l~~kl~~~~~~d~~l~~kme~Ms~qi~eyE~LvkQLKeELreEKlKAKEEAEDLtQEMAEL 276 (325)
.+++++|+ .++|+. ++++.|.+-+..|+-+|+-...--.... ..++-=+|+.||+.|
T Consensus 306 ~arl~~K~---~~~~~~--~~~~~l~~sl~~y~~vv~y~~~~~~~~~--~~~~El~l~~EM~~L 362 (371)
T PF12309_consen 306 IARLYSKL---ITSDPK--EQLENLEKSLEYYKWVVDYCEKHPEAAE--EFEEELELCREMVQL 362 (371)
T ss_pred HHHHHccc---cCCChH--HHHHHHHHHHHHHHHHHHHHHhChhhHH--HHHHHHHHHHHHHHH
Confidence 35566666 357775 9999999999999999986654333111 123345788888775
No 97
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=29.56 E-value=78 Score=25.29 Aligned_cols=72 Identities=24% Similarity=0.310 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcccccccccCC
Q 020513 246 LLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEECKRRACIEQAS-LQRIAELETQIEKGQNKFVATGRHL 323 (325)
Q Consensus 246 ~LvkQLKeELreEKlKAKEEAEDLtQEMAELRYQmTglLEEEcKRRaCIEQAS-lQrIaELEAQi~ke~~k~~~a~r~l 323 (325)
.++.+|..+|..---=-.+....|..-+..++.+ |.. .--......+ ..|+...-+...-.|-+.++++|++
T Consensus 4 ~~L~~L~~eL~~~~~ld~~~~~~L~~l~~dIe~~----L~~--~~~~~~~~~~l~d~l~~av~~FE~~HP~l~~~lr~i 76 (85)
T PF14357_consen 4 ELLEKLHQELEQNPPLDEETRAELSSLDDDIEAQ----LAE--EDEAEAEDESLVDRLNEAVERFEASHPKLAGILRNI 76 (85)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH----Hhc--CCcccccchhHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 4566777777643222234444454444444444 443 1122233344 4888888888888888888888864
No 98
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=29.25 E-value=3.3e+02 Score=22.49 Aligned_cols=36 Identities=25% Similarity=0.360 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhc
Q 020513 129 MNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSY 164 (325)
Q Consensus 129 m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~s 164 (325)
+..-++.+..+.+.-+..+..|......|...++..
T Consensus 4 ~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~ 39 (140)
T PRK03947 4 SEQELEELAAQLQALQAQIEALQQQLEELQASINEL 39 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777777777777766654
No 99
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.07 E-value=9.4e+02 Score=27.72 Aligned_cols=69 Identities=25% Similarity=0.345 Sum_probs=41.6
Q ss_pred cchhhhhhhHHHHHHHHHHHh-------hhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhc
Q 020513 96 CEIESLKIDMIALEQTCVEAK-------KVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSY 164 (325)
Q Consensus 96 cEIESmKLD~~aLEQ~lfdA~-------k~q~et~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~s 164 (325)
.|.+-+.--+-.|.+.+.|-. ---+++.-..+.|..-|.+++.++++-|++...|--|..+|..++...
T Consensus 444 ~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~ 519 (1118)
T KOG1029|consen 444 QELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQK 519 (1118)
T ss_pred HHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence 444555555556666665532 122233334455666677778888888887777777777776666553
No 100
>TIGR01410 tatB twin arginine-targeting protein translocase TatB. This model represents the TatB protein of a Sec-independent system for transporting folded proteins, often with a bound redox cofactor, across the bacterial inner membrane. TatC is the multiple membrane spanning component. TatB, like the related TatA/E proteins, appears to span the membrane one time. The tat system recognizes proteins with an elongated signal sequence containing a conserved R-R in a motif approximated by RRxFLK N-terminal to the transmembrane helix. TIGRFAMs model TIGR01409 describes this twin-Arg signal sequence. A similar system, termed Delta-pH-dependent transport, operates on chloroplast-encoded proteins.
Probab=27.83 E-value=3.1e+02 Score=21.77 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=34.7
Q ss_pred HHHHHHhhCCCCchHHHHHhHHHHHhhHHHHHHHHHHHHHHHhh
Q 020513 217 LSKLALVLGPDANLKEKIKGMSLQICEYELLVKQLKEELRAEKF 260 (325)
Q Consensus 217 ~~kl~~~~~~d~~l~~kme~Ms~qi~eyE~LvkQLKeELreEKl 260 (325)
+-.+++++..-.+|-+.+..+++-+.+....++..|+++.++--
T Consensus 11 I~vvallv~GP~kLP~~~r~~G~~i~~~r~~~~~~~~~~~~e~~ 54 (80)
T TIGR01410 11 IAVVALVVLGPERLPVAIRAVGKFVRRLRGMASDVKNELDEELK 54 (80)
T ss_pred HHHHHHheECchHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHhc
Confidence 33445555677788899999999999999999999999876543
No 101
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=27.77 E-value=2.5e+02 Score=26.61 Aligned_cols=47 Identities=23% Similarity=0.236 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhccch
Q 020513 121 ENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETN 167 (325)
Q Consensus 121 et~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~se~n 167 (325)
-+..+-+.|++-|.-|+-++|.-+.++-+.+-|.|+|---|++-++-
T Consensus 76 ~~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQ 122 (201)
T KOG4603|consen 76 VSDEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQ 122 (201)
T ss_pred CChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 45678889999999999999999999999999999998888886553
No 102
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=27.49 E-value=39 Score=28.13 Aligned_cols=64 Identities=23% Similarity=0.390 Sum_probs=48.4
Q ss_pred hhhhhHHHHHHHHHH-HhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhh
Q 020513 100 SLKIDMIALEQTCVE-AKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDS 163 (325)
Q Consensus 100 SmKLD~~aLEQ~lfd-A~k~q~et~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~ 163 (325)
-|.-.+-.|-.+||+ |.+.-...-.+...+..-...++-++.++...++.|..+.+.|+..+..
T Consensus 19 ~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v~~~ 83 (100)
T PF06428_consen 19 QIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTVMES 83 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677788885 6666666666677777777888888888888888888888888877665
No 103
>PF08988 DUF1895: Protein of unknown function (DUF1895); InterPro: IPR015081 The YscE protein, produced by the pathogen Yersinia, assumes a secondary structure composed of two anti-parallel alpha-helices separated by a flexible loop. The function of this protein is, as yet, unknown. ; PDB: 1ZW0_B 2P58_A 2UWJ_E 2Q1K_D 3PH0_B.
Probab=27.42 E-value=1.5e+02 Score=23.29 Aligned_cols=12 Identities=42% Similarity=0.401 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHh
Q 020513 105 MIALEQTCVEAK 116 (325)
Q Consensus 105 ~~aLEQ~lfdA~ 116 (325)
||.||+.|+.|.
T Consensus 1 mT~LE~~L~~~~ 12 (68)
T PF08988_consen 1 MTNLEQRLSNAS 12 (68)
T ss_dssp SCHHHHHHTCTS
T ss_pred CchHHHHHHhcc
Confidence 678999998843
No 104
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.14 E-value=1.2e+02 Score=24.97 Aligned_cols=31 Identities=35% Similarity=0.487 Sum_probs=25.8
Q ss_pred HHHHHHHHhHhHHHHHHHHHHhhHHHHHhhh
Q 020513 132 LIKELEVRTQDSQEIIECLDKENKELKEKLD 162 (325)
Q Consensus 132 ~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~ 162 (325)
++.-|+..+|.|-.+|.-|.-|..+|++|-.
T Consensus 5 v~ekLE~KiqqAvdTI~LLQmEieELKEknn 35 (79)
T COG3074 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNN 35 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5667888888999999999999999988754
No 105
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=26.98 E-value=4.7e+02 Score=23.59 Aligned_cols=153 Identities=25% Similarity=0.325 Sum_probs=84.2
Q ss_pred hhhHHHhhhhhhhhhhhhhhhhhhhhhhccccchHHHHHHHHHHHhhccchhHHHH------HHhhhHHHHhhhhh----
Q 020513 8 DYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLM------EELQSKEERLRNSA---- 77 (325)
Q Consensus 8 DYLqDQLn~Rn~Evn~l~EHih~LElKL~~~e~l~e~V~~l~eEL~rS~Se~~lL~------qEle~kE~eLq~sa---- 77 (325)
-.|-..|+-++.=+..|-.-.+.|-=++..|..+++.|..|.+ +-+..+. ..+- .+|..--.+|..+.
T Consensus 13 k~L~~rL~~~d~~ad~Ll~qa~~l~~~i~sm~~y~eei~~l~~-~~~~~~~-~~l~~En~qi~~Lq~EN~eL~~~leEhq 90 (181)
T PF05769_consen 13 KRLVERLKDHDNAADSLLSQAEALNKQIESMRQYQEEIQELNE-LSKNRPR-AGLQQENRQIRQLQQENRELRQSLEEHQ 90 (181)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhcccc-hhHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888999999999999999999999999999999877644 3321111 2222 22322223333221
Q ss_pred ----hhHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHH-HHHHHHHHHHHHhHhHHHHHHHHHH
Q 020513 78 ----LHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKA-RMNSLIKELEVRTQDSQEIIECLDK 152 (325)
Q Consensus 78 ----l~IeKLEEsisS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~-~m~~~i~Elq~q~q~Aq~~i~~L~k 152 (325)
+-..|-=+.++++-..+...- .--+....+.+-.--.-+.+-|.|-+ -|+..|.==+-..++-+++|-.|..
T Consensus 91 ~alelIM~KyReq~~~l~~~~k~~~---~~~~~~~~~~~~~~~~~~~~kI~EM~~vM~~ai~~de~~~~~~qe~i~qL~~ 167 (181)
T PF05769_consen 91 SALELIMSKYREQMSQLMMASKFDD---TEPYLEANEQLSKEVQSQAEKICEMAAVMRKAIELDEENSQEEQEIIAQLET 167 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh---hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhHhHHHHHHHHHH
Confidence 112444455555444443211 11111111111111111112222211 3334443334456677899999999
Q ss_pred hhHHHHHhhhhcc
Q 020513 153 ENKELKEKLDSYE 165 (325)
Q Consensus 153 enkeL~ekl~~se 165 (325)
||+.||+.|..|.
T Consensus 168 EN~~LRelL~Is~ 180 (181)
T PF05769_consen 168 ENKGLRELLQISK 180 (181)
T ss_pred HHHHHHHHHhhhc
Confidence 9999999998863
No 106
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=26.86 E-value=3.7e+02 Score=22.30 Aligned_cols=83 Identities=25% Similarity=0.274 Sum_probs=49.1
Q ss_pred hhhhhhHHHHHhhhhccc--cccccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 020513 74 RNSALHIKKLEESISSSA--LESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLD 151 (325)
Q Consensus 74 q~sal~IeKLEEsisS~t--LeSQcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~ 151 (325)
-+..+.+-++..++++-. -+++.-.+.|..++.++|-++-.+.-+.+-...+...-..+-.+....++.+++.|..|.
T Consensus 22 ~k~~~~~~~~~~~~~~~~~~e~~~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk 101 (139)
T PF05615_consen 22 LKRFLKWCNLSDSILSGQPSEESQFLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELK 101 (139)
T ss_pred HHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445544443322 456667788888888888887777666665555555555555555555555555555544
Q ss_pred HhhHH
Q 020513 152 KENKE 156 (325)
Q Consensus 152 kenke 156 (325)
.+...
T Consensus 102 ~~L~~ 106 (139)
T PF05615_consen 102 EELEE 106 (139)
T ss_pred HHHHH
Confidence 44433
No 107
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=26.55 E-value=2.1e+02 Score=26.02 Aligned_cols=52 Identities=27% Similarity=0.296 Sum_probs=38.1
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhccc
Q 020513 111 TCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYET 166 (325)
Q Consensus 111 ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~se~ 166 (325)
..|+.-.-.....+||.++..-+.+++.+.++++ .+..||.+|++.|.....
T Consensus 63 ~~~~~~~~~~~l~~en~~L~~e~~~l~~~~~~~~----~l~~en~~L~~lL~~~~~ 114 (276)
T PRK13922 63 GVFESLASLFDLREENEELKKELLELESRLQELE----QLEAENARLRELLNLKES 114 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcCccc
Confidence 4444444555677888888888888888877764 567899999998876543
No 108
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=26.42 E-value=5.6e+02 Score=24.28 Aligned_cols=76 Identities=14% Similarity=0.164 Sum_probs=51.2
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhccccchHHHHHHHHHHHhhccchhHHHHHHhhh----HHHHhhhhhhhHHHHHhhhhc
Q 020513 14 LNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQS----KEERLRNSALHIKKLEESISS 89 (325)
Q Consensus 14 Ln~Rn~Evn~l~EHih~LElKL~~~e~l~e~V~~l~eEL~rS~Se~~lL~qEle~----kE~eLq~sal~IeKLEEsisS 89 (325)
+.-|+.+--.|.+++-.|+-+|+.+++.-.+|-+=..++.-+-++.==++-.+-. -..-|+.-+.+++++..+++.
T Consensus 49 v~~~~~eF~Emkey~d~L~~~L~~ieki~~Rl~kr~~ey~~~~~~fgk~~~lws~~E~~L~~~L~~~a~~~d~~~~~~~~ 128 (243)
T cd07666 49 VKNRPEEFTEMNEYVEAFSQKINVLDKISQRIYKEQREYFEELKEYGPIYTLWSASEEELADSLKGMASCIDRCCKATDK 128 (243)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 3447788889999999999999999999988876666665554444333333222 344566667777755544444
No 109
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=26.40 E-value=8.6e+02 Score=26.41 Aligned_cols=107 Identities=27% Similarity=0.342 Sum_probs=71.6
Q ss_pred hhHHHhhhhhhhhhhhhhhhhhhhhhhccccchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhHHHHHhhhh
Q 020513 9 YLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESIS 88 (325)
Q Consensus 9 YLqDQLn~Rn~Evn~l~EHih~LElKL~~~e~l~e~V~~l~eEL~rS~Se~~lL~qEle~kE~eLq~sal~IeKLEEsis 88 (325)
=.+++++-+-.+--.|.+|+-.+....++. ...++.+..||..-+|.|-+.-+| .+.+..++...|++||+++-
T Consensus 429 ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~---~~~l~~~~~el~~~~~~~~~~k~e---~eee~~k~~~E~e~le~~l~ 502 (581)
T KOG0995|consen 429 EISEELHEAENELETLQEHFSNKASTIEEK---IQILGEIELELKKAESKYELKKEE---AEEEWKKCRKEIEKLEEELL 502 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 345566666566666777777777666553 456788888999999988888765 56788899999999998776
Q ss_pred ccccccccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 020513 89 SSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKE 135 (325)
Q Consensus 89 S~tLeSQcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~E 135 (325)
...|. +.+.+-+|..+-+.+--+-++|..-..|
T Consensus 503 ~l~l~--------------~~~~m~~a~~~v~s~e~el~~~~~~~~e 535 (581)
T KOG0995|consen 503 NLKLV--------------LNTSMKEAEELVKSIELELDRMVATGEE 535 (581)
T ss_pred HHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65543 4555555555544444444444433333
No 110
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=26.26 E-value=4.9e+02 Score=23.55 Aligned_cols=86 Identities=24% Similarity=0.366 Sum_probs=54.1
Q ss_pred ccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHh--------HhHHHHHHHHHHhhHHHHHhhhhccc
Q 020513 95 QCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRT--------QDSQEIIECLDKENKELKEKLDSYET 166 (325)
Q Consensus 95 QcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~--------q~Aq~~i~~L~kenkeL~ekl~~se~ 166 (325)
+=+|.+++.+--.|+|.+ .+++.|--+=.++....|.+++-.. +.-+..-+.|++-..+|-+-+.+++.
T Consensus 99 ek~l~~Lk~e~evL~qr~---~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~nl 175 (201)
T PF13851_consen 99 EKELKDLKWEHEVLEQRF---EKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAANL 175 (201)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 446667777777788776 3455555555666666666665433 12233445667777778888888877
Q ss_pred hhH---HHHHHhHHHHhhhh
Q 020513 167 NGR---VFCQKIEEWMEKED 183 (325)
Q Consensus 167 n~r---~~~q~~~e~le~ed 183 (325)
.|. .....+.+.|.+++
T Consensus 176 dp~~~~~v~~~l~~~l~~KN 195 (201)
T PF13851_consen 176 DPAALSQVSKKLEDVLDSKN 195 (201)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 776 33566666665554
No 111
>PF15566 Imm18: Immunity protein 18
Probab=26.13 E-value=32 Score=26.26 Aligned_cols=22 Identities=41% Similarity=0.637 Sum_probs=17.0
Q ss_pred hhhhhhHHHh-hhhhhhhhhhhhhhh
Q 020513 5 QEIDYLQDQL-NARNEEVYSLSEHVH 29 (325)
Q Consensus 5 QEIDYLqDQL-n~Rn~Evn~l~EHih 29 (325)
++++||+++| |.++.+ .+.|+|
T Consensus 2 egL~~L~~~l~~L~~~~---~~~H~H 24 (52)
T PF15566_consen 2 EGLELLQDQLENLQEKE---PFDHEH 24 (52)
T ss_pred chHHHHHHHHHHHHhcc---CCCCce
Confidence 5789999886 566666 778887
No 112
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=25.48 E-value=1.3e+02 Score=24.72 Aligned_cols=34 Identities=35% Similarity=0.468 Sum_probs=29.2
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhc
Q 020513 131 SLIKELEVRTQDSQEIIECLDKENKELKEKLDSY 164 (325)
Q Consensus 131 ~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~s 164 (325)
.++.-|+..+|.|-.+|.-|.-|..+|+++=...
T Consensus 4 EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L 37 (79)
T PRK15422 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSL 37 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677889999999999999999999999985543
No 113
>PRK04654 sec-independent translocase; Provisional
Probab=25.39 E-value=6e+02 Score=24.28 Aligned_cols=61 Identities=21% Similarity=0.288 Sum_probs=40.6
Q ss_pred HHHHHHhhCCCCchHHHHHhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhh
Q 020513 217 LSKLALVLGPDANLKEKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTS 282 (325)
Q Consensus 217 ~~kl~~~~~~d~~l~~kme~Ms~qi~eyE~LvkQLKeELreEKlKAKEEAEDLtQEMAELRYQmTg 282 (325)
+-.+++++.+--+|-+.+..+++=|.+....+...++++..|- +.++|-.+|.+++..+..
T Consensus 12 I~VVALlV~GPerLPe~aRtlGk~irk~R~~~~~vk~El~~El-----~~~ELrk~l~~~~~~i~~ 72 (214)
T PRK04654 12 IAVVALVVLGPERLPKAARFAGLWVRRARMQWDSVKQELEREL-----EAEELKRSLQDVQASLRE 72 (214)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHH
Confidence 3444555556667888888888888888888888888887662 234555555555555443
No 114
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=25.01 E-value=1.1e+03 Score=27.27 Aligned_cols=54 Identities=22% Similarity=0.274 Sum_probs=27.5
Q ss_pred hhhhhhhHHH-hhhhhhhhhhhhhhhh-h----hhhhhccccchHHHHHHHHHHHhhccc
Q 020513 4 SQEIDYLQDQ-LNARNEEVYSLSEHVH-S----LELKLVDMEILQDKVGQLEEELRRSDS 57 (325)
Q Consensus 4 ~QEIDYLqDQ-Ln~Rn~Evn~l~EHih-~----LElKL~~~e~l~e~V~~l~eEL~rS~S 57 (325)
|.||+-|..- ..+|+..--|+++--+ . ...+-...+.+.++|..++..|....+
T Consensus 410 ~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e 469 (1041)
T KOG0243|consen 410 YEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTE 469 (1041)
T ss_pred HHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788777544 4567665555544333 1 112222334455555555555555443
No 115
>PF13713 BRX_N: Transcription factor BRX N-terminal domain
Probab=24.95 E-value=62 Score=23.31 Aligned_cols=29 Identities=28% Similarity=0.382 Sum_probs=24.3
Q ss_pred hHhHHHHHHHHHHhhHHHHHhhhhccchh
Q 020513 140 TQDSQEIIECLDKENKELKEKLDSYETNG 168 (325)
Q Consensus 140 ~q~Aq~~i~~L~kenkeL~ekl~~se~n~ 168 (325)
...|+++|..|-.|.|++-+|++..-.|.
T Consensus 7 ~kaaKe~IKsLt~QlK~maekl~~~~~~~ 35 (39)
T PF13713_consen 7 CKAAKEVIKSLTAQLKDMAEKLPGAYRNC 35 (39)
T ss_pred cHHHHHHHHHHHHHHHHHHHhCchhhhcc
Confidence 35689999999999999999998765544
No 116
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=24.91 E-value=3.9e+02 Score=24.32 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHH
Q 020513 246 LLVKQLKEELRAEKFKAKEEAED 268 (325)
Q Consensus 246 ~LvkQLKeELreEKlKAKEEAED 268 (325)
.+++++.++.+++.-....+|..
T Consensus 6 ~~i~~I~~~a~eeak~I~~eA~~ 28 (194)
T COG1390 6 KLIKKILREAEEEAEEILEEARE 28 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 117
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=24.89 E-value=3.8e+02 Score=29.83 Aligned_cols=62 Identities=27% Similarity=0.360 Sum_probs=36.4
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHh----HhHHHHHHHHHHhhHHHHHhhhhccchhHHHHHHh
Q 020513 113 VEAKKVHKENVQEKARMNSLIKELEVRT----QDSQEIIECLDKENKELKEKLDSYETNGRVFCQKI 175 (325)
Q Consensus 113 fdA~k~q~et~~ek~~m~~~i~Elq~q~----q~Aq~~i~~L~kenkeL~ekl~~se~n~r~~~q~~ 175 (325)
|..++...|.-..+-.....|+-||-.+ -.-|.+.+.|+||||+|+ ++.-+..|.++-..++
T Consensus 215 ~~~~~ts~E~~K~~vs~~e~i~~LQeE~l~tQ~kYQreLErlEKENkeLr-~lll~kd~k~i~~kkl 280 (980)
T KOG0447|consen 215 IQEESTSYEQQKRKVSDKEKIDQLQEELLHTQLKYQRILERLEKENKELR-KLVLQKDDKGIHHRKL 280 (980)
T ss_pred HhhccCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHhhccchhhHHHHH
Confidence 3444444444444444444444444322 134789999999999999 7777766665444443
No 118
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=24.79 E-value=1.4e+03 Score=28.21 Aligned_cols=163 Identities=20% Similarity=0.258 Sum_probs=79.5
Q ss_pred chhhhhhhHHHhhhhhhhhhhhhhhhhhhhhhhccccchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhHHH
Q 020513 3 CSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKK 82 (325)
Q Consensus 3 C~QEIDYLqDQLn~Rn~Evn~l~EHih~LElKL~~~e~l~e~V~~l~eEL~rS~Se~~lL~qEle~kE~eLq~sal~IeK 82 (325)
|.+.|+=|.+-|..=..+.-....|+|+|.-.+. -+|..-++.+.+. .+..--++.+|.++...+.+.-..+.-
T Consensus 803 ~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~--~~l~~~~~~i~~~----~~~~~~~~~~l~~~~~~~~~le~k~~e 876 (1822)
T KOG4674|consen 803 CESRIKELERELQKLKKKLQEKSSDLRELTNSLE--KQLENAQNLVDEL----ESELKSLLTSLDSVSTNIAKLEIKLSE 876 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444443332 1222222222222 233445677777777777777777777
Q ss_pred HHhhhhcc-----ccccccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHH-HHHHHHHHHHHHhHhHHHHHHHHHHhhHH
Q 020513 83 LEESISSS-----ALESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKA-RMNSLIKELEVRTQDSQEIIECLDKENKE 156 (325)
Q Consensus 83 LEEsisS~-----tLeSQcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~-~m~~~i~Elq~q~q~Aq~~i~~L~kenke 156 (325)
|+.-|-+. ++++- |...|.+.++.+| ....-+-....++= .-..-|.+|+-...-+...++.......+
T Consensus 877 L~k~l~~~~~~~~~l~~~----~~~~d~~~~~~~L-r~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde 951 (1822)
T KOG4674|consen 877 LEKRLKSAKTQLLNLDSK----SSNEDATILEDTL-RKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDE 951 (1822)
T ss_pred HHHHHHHhHHHHhhcccc----chhhhhhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76555442 45543 5566777666663 22222222222221 12234566666666666666666555555
Q ss_pred HHHhhhhccchhHHHHHHhH
Q 020513 157 LKEKLDSYETNGRVFCQKIE 176 (325)
Q Consensus 157 L~ekl~~se~n~r~~~q~~~ 176 (325)
.+..+.+.-.+-..+.-+.+
T Consensus 952 ~~~~~ea~ie~~~~k~tslE 971 (1822)
T KOG4674|consen 952 TRLELEAKIESLHKKITSLE 971 (1822)
T ss_pred HHHhhHHHHHHHHHHHHHHH
Confidence 55555554333333333333
No 119
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.78 E-value=1.1e+03 Score=27.08 Aligned_cols=37 Identities=27% Similarity=0.504 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhh
Q 020513 127 ARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDS 163 (325)
Q Consensus 127 ~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~ 163 (325)
....++|.++..++..-+.....|.-+|++|.++...
T Consensus 660 ~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~ 696 (970)
T KOG0946|consen 660 QKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQD 696 (970)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999999999999999999888765
No 120
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=24.66 E-value=5.1e+02 Score=23.20 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=17.3
Q ss_pred HHHHhhhhhhHHHHHHHH------------HHHHHHHHhhhHHHHHH
Q 020513 255 LRAEKFKAKEEAEDLAQE------------MAELRYQMTSLLEEECK 289 (325)
Q Consensus 255 LreEKlKAKEEAEDLtQE------------MAELRYQmTglLEEEcK 289 (325)
..++--+|+.+|..+.+| -+.+.-..+.+|++|.+
T Consensus 67 ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~~~~~~~~~ 113 (155)
T PRK06569 67 YNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLKNSINQNIE 113 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555444 33344445555555554
No 121
>PRK04098 sec-independent translocase; Provisional
Probab=24.33 E-value=5.4e+02 Score=23.39 Aligned_cols=41 Identities=12% Similarity=0.127 Sum_probs=31.2
Q ss_pred HHHHHhhCCCCchHHHHHhHHHHHhhHHHHHHHHHHHHHHH
Q 020513 218 SKLALVLGPDANLKEKIKGMSLQICEYELLVKQLKEELRAE 258 (325)
Q Consensus 218 ~kl~~~~~~d~~l~~kme~Ms~qi~eyE~LvkQLKeELreE 258 (325)
-.+++++.+-.+|-+.+..+++=|..+...+...|.++.++
T Consensus 13 ~vVaLlvfGP~KLP~~~r~lGk~ir~~K~~~~~~k~~l~~E 53 (158)
T PRK04098 13 LVVAIIFLGPDKLPQAMVDIAKFFKAVKKTINDAKSTLDKE 53 (158)
T ss_pred HHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555899999999999999999988887776665
No 122
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=24.29 E-value=5.5e+02 Score=23.44 Aligned_cols=57 Identities=26% Similarity=0.435 Sum_probs=45.7
Q ss_pred hHHHHHhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHH
Q 020513 230 LKEKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEE 286 (325)
Q Consensus 230 l~~kme~Ms~qi~eyE~LvkQLKeELreEKlKAKEEAEDLtQEMAELRYQmTglLEE 286 (325)
|...+..+-.++..++.-|..+...+..+.-.-...-.+|-.|++++|.+|+..+.+
T Consensus 228 l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~e 284 (312)
T PF00038_consen 228 LQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLRE 284 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Confidence 345556666777788888888888888888888888889999999999999887754
No 123
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=24.24 E-value=95 Score=34.82 Aligned_cols=49 Identities=33% Similarity=0.443 Sum_probs=36.2
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHH---HHHHHHHHHhhhHHH
Q 020513 236 GMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQ---EMAELRYQMTSLLEE 286 (325)
Q Consensus 236 ~Ms~qi~eyE~LvkQLKeELreEKlKAKEEAEDLtQ---EMAELRYQmTglLEE 286 (325)
+.|+||++|++-+.-|++||+.-+- +++-..+++ =-+-++-|.|++|+.
T Consensus 826 Di~kql~eykvey~vLq~El~~~~~--~~~~~~~~~lE~~~s~~~~q~~~ll~q 877 (948)
T KOG4436|consen 826 DISKQLAEYKVEYHVLQEELTTSSH--LEDLNRIAKLETTNSSLQAQNTDLLEQ 877 (948)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccc--hhhcccccccccchhhhHhhhhhhhhh
Confidence 4699999999999999999999876 444332211 234578888888875
No 124
>PF06583 Neogenin_C: Neogenin C-terminus; InterPro: IPR010560 This entry represents the C terminus of eukaryotic neogenin precursor proteins, which contains several potential phosphorylation sites []. Neogenin is a member of the N-CAM family of cell adhesion molecules (and therefore contains multiple copies of IPR007110 from INTERPRO and IPR003961 from INTERPRO) and is closely related to the DCC tumour suppressor gene product - these proteins may play an integral role in regulating differentiation programmes and/or cell migration events within many adult and embryonic tissues [].; GO: 0016021 integral to membrane; PDB: 3AU4_B.
Probab=24.12 E-value=43 Score=33.06 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=11.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHH
Q 020513 259 KFKAKEEAEDLAQEMAELRYQM 280 (325)
Q Consensus 259 KlKAKEEAEDLtQEMAELRYQm 280 (325)
.++--=+.|||.||||-|===|
T Consensus 289 ~~~~systeeL~qEMAnLEGLM 310 (319)
T PF06583_consen 289 RLSPSYSTEELNQEMANLEGLM 310 (319)
T ss_dssp ----HHH---HHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHH
Confidence 3344668999999999885433
No 125
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=23.67 E-value=4e+02 Score=23.12 Aligned_cols=36 Identities=22% Similarity=0.432 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHH
Q 020513 124 QEKARMNSLIKELEVRTQDSQEIIECLDKENKELKE 159 (325)
Q Consensus 124 ~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~e 159 (325)
++++..+.-|++++.++..++..++.|.+|.+.|..
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566777888888999999999999999888887754
No 126
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=23.33 E-value=6.8e+02 Score=24.14 Aligned_cols=73 Identities=26% Similarity=0.368 Sum_probs=25.6
Q ss_pred hhhHHHhhhhhhhhhhhhhhhhhhhhhhccccchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhHHHHH
Q 020513 8 DYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLE 84 (325)
Q Consensus 8 DYLqDQLn~Rn~Evn~l~EHih~LElKL~~~e~l~e~V~~l~eEL~rS~Se~~lL~qEle~kE~eLq~sal~IeKLE 84 (325)
+-|+.|+..-..|.+...+-+..|. ......+.+..+++|+..=.-+.=-|++||+..|.+-....-.|.+|+
T Consensus 12 ~~l~~~~~~~~~E~~~Y~~fL~~l~----~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le 84 (314)
T PF04111_consen 12 EQLDKQLEQAEKERDTYQEFLKKLE----EESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELE 84 (314)
T ss_dssp ----------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----hcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666665555 334445556666666666555555666666666666666665666655
No 127
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=22.93 E-value=8.9e+02 Score=25.38 Aligned_cols=53 Identities=17% Similarity=0.186 Sum_probs=34.1
Q ss_pred hhhhhHHHHHHHHHHHh--hhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhH
Q 020513 100 SLKIDMIALEQTCVEAK--KVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENK 155 (325)
Q Consensus 100 SmKLD~~aLEQ~lfdA~--k~q~et~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenk 155 (325)
-|+...-+|=...|+.+ +|. -+-+..+..+++=++-++..-++-|+.+.++..
T Consensus 110 ~L~~~F~~LA~~ile~k~~~f~---~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~ 164 (475)
T PRK10361 110 RLSEQFENLANRIFEHSNRRVD---EQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEA 164 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 35555667777788775 343 334556677777777777777777776665433
No 128
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=22.89 E-value=59 Score=29.38 Aligned_cols=32 Identities=34% Similarity=0.454 Sum_probs=8.6
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhh
Q 020513 250 QLKEELRAEKFKAKEEAEDLAQEMAELRYQMTS 282 (325)
Q Consensus 250 QLKeELreEKlKAKEEAEDLtQEMAELRYQmTg 282 (325)
+=||.||++--+-|.||.||-||+ -+|-+...
T Consensus 24 dEKE~L~~~~QRLkDE~RDLKqEl-~V~ek~~~ 55 (166)
T PF04880_consen 24 DEKENLREEVQRLKDELRDLKQEL-IVQEKLRK 55 (166)
T ss_dssp HHHHHHHHCH-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhh
Confidence 558999999999999999999999 77766543
No 129
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=22.79 E-value=7.7e+02 Score=24.58 Aligned_cols=166 Identities=25% Similarity=0.290 Sum_probs=91.7
Q ss_pred ccchhHH-HHHHhhhHHHHhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhhhhhhhHH---HHHHHH
Q 020513 55 SDSECLL-LMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQ---EKARMN 130 (325)
Q Consensus 55 S~Se~~l-L~qEle~kE~eLq~sal~IeKLEEsisS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~q~et~~---ek~~m~ 130 (325)
|+++-++ |-+||++-..|--.-.+-++.|.+..+.++ =-...+.+ .|..|++-.+. ++..+.
T Consensus 6 SK~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LK-----------kk~~el~~---~~~~~~d~~~~~~~~~~~La 71 (319)
T PF09789_consen 6 SKSEALLILSQELEKCQSERDQYKLMAEQLQERYQALK-----------KKYRELIQ---EAAGFGDPSIPPEKENKNLA 71 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHhhh---hhcccCCccCCcccchhhHH
Confidence 4455443 446776655555554555666664443322 11122221 12222221111 444444
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhccchhHHHHHHhHHHHhhhhhhhhhhhhhhhhhhhccccccccccch
Q 020513 131 SLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCG 210 (325)
Q Consensus 131 ~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~se~n~r~~~q~~~e~le~ed~~~l~~q~~~~~l~~~~~~s~~~~~c~ 210 (325)
.++. ++.+-...|..+.+.|+.++......++.++..+...- +- . .+++.|+
T Consensus 72 ~lL~-------~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r-------~~-----~---------~~~~~~~ 123 (319)
T PF09789_consen 72 QLLS-------ESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQR-------VG-----D---------EGIGARH 123 (319)
T ss_pred HHHH-------HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhh-------hh-----h---------ccccccc
Confidence 4444 44555667788888888888777778888887754432 00 0 0122332
Q ss_pred hhhHHHHHHHHHhhCCCCchHHHHHhHHHHHhhHHHHHHHH---HHHHHHHhhhhhhHHHHHHHHHH
Q 020513 211 KVFGALLSKLALVLGPDANLKEKIKGMSLQICEYELLVKQL---KEELRAEKFKAKEEAEDLAQEMA 274 (325)
Q Consensus 211 ~~f~~l~~kl~~~~~~d~~l~~kme~Ms~qi~eyE~LvkQL---KeELreEKlKAKEEAEDLtQEMA 274 (325)
|. ....+|...+|++-+|+.+++-=+..+ |+|+..|.--=|.-|..|-+|+-
T Consensus 124 --~~----------~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn 178 (319)
T PF09789_consen 124 --FP----------HEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELN 178 (319)
T ss_pred --cc----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 234455678889999998888777766 45555666666677788877763
No 130
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=22.79 E-value=4.8e+02 Score=27.04 Aligned_cols=56 Identities=39% Similarity=0.503 Sum_probs=40.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH--------HHHHHhhhHHHHHHHHHHHHHHHHH
Q 020513 237 MSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAE--------LRYQMTSLLEEECKRRACIEQASLQ 300 (325)
Q Consensus 237 Ms~qi~eyE~LvkQLKeELreEKlKAKEEAEDLtQEMAE--------LRYQmTglLEEEcKRRaCIEQASlQ 300 (325)
|-+.-.++..|++-||+= -|.|+||=.||+|+-+ -..-|+++ =+||| .|.+++-..
T Consensus 32 Mek~eeeh~~Lm~tL~k~-----kk~KeeAl~l~~e~e~kLee~e~~Cn~sm~~l-WeECk--pCL~~tCm~ 95 (436)
T PF01093_consen 32 MEKTEEEHKELMKTLEKS-----KKEKEEALKLANEVEEKLEEEEEVCNESMMAL-WEECK--PCLKQTCMR 95 (436)
T ss_pred HHhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--HHHHHHhHH
Confidence 567778899999998753 4557888888888754 34567755 46785 898887654
No 131
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=21.13 E-value=5.7e+02 Score=22.41 Aligned_cols=88 Identities=23% Similarity=0.251 Sum_probs=47.6
Q ss_pred HHHHHHHHHhHhHHHHHHHHHH---hhHHHHHhhhhccchhHHHHHHhHHHHhhhhhhhhhhhhhhhhhhhccccccccc
Q 020513 131 SLIKELEVRTQDSQEIIECLDK---ENKELKEKLDSYETNGRVFCQKIEEWMEKEDRKQLDIQSLVSELERNFTVSKETC 207 (325)
Q Consensus 131 ~~i~Elq~q~q~Aq~~i~~L~k---enkeL~ekl~~se~n~r~~~q~~~e~le~ed~~~l~~q~~~~~l~~~~~~s~~~~ 207 (325)
.-+..++-|+-+|.+.|..|.+ -|.+|+.++... |.-..-....-+..+..+.++..|..-+.-.+...
T Consensus 27 ~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~l--------q~~~~~~~~~~e~~l~~~~~~~ai~~al~~akakn 98 (155)
T PF06810_consen 27 EERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEEL--------QAKNKTAKEEYEAKLAQMKKDSAIKSALKGAKAKN 98 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3456677788888888888877 555666555552 22222122223345666666677766655444432
Q ss_pred cchhhhHHHHHHHHHhhCCCC
Q 020513 208 FCGKVFGALLSKLALVLGPDA 228 (325)
Q Consensus 208 ~c~~~f~~l~~kl~~~~~~d~ 228 (325)
+..+-+++..=.+.++.|+
T Consensus 99 --~~av~allD~d~l~l~~dg 117 (155)
T PF06810_consen 99 --PKAVKALLDLDKLKLDDDG 117 (155)
T ss_pred --HHHHHHhcCHHHeeeCCCc
Confidence 3444455543344444443
No 132
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=20.13 E-value=5.1e+02 Score=21.45 Aligned_cols=75 Identities=16% Similarity=0.197 Sum_probs=38.0
Q ss_pred hHHHHHHHHHhhCCCCchHHHHHhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 020513 213 FGALLSKLALVLGPDANLKEKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEECKR 290 (325)
Q Consensus 213 f~~l~~kl~~~~~~d~~l~~kme~Ms~qi~eyE~LvkQLKeELreEKlKAKEEAEDLtQEMAELRYQmTglLEEEcKR 290 (325)
|.||.+.|.- +...+.+.++.......+.+.+.++.+..|.+-+-+|.+--++...+....+-++..-..+|.++
T Consensus 26 ~~pi~~~l~~---R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~ 100 (156)
T PRK05759 26 WPPIMKALEE---RQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAAR 100 (156)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444433 34444455555555555555555555555555444444444444445555555555555555554
No 133
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.11 E-value=5.9e+02 Score=24.86 Aligned_cols=76 Identities=18% Similarity=0.183 Sum_probs=51.4
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhccchhHHHHHHhHHHHhhhhhhhh
Q 020513 112 CVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEEWMEKEDRKQL 187 (325)
Q Consensus 112 lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~se~n~r~~~q~~~e~le~ed~~~l 187 (325)
+-.+.+...+.-.++..+..-|.-+..++.+.+.-|+.+.+++.++...+...+.-+..+...|.+|-+.=.....
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raR 108 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRAR 108 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566666666677777777777777777777777777777777777766777777777777655444333
Done!