Query 020513
Match_columns 325
No_of_seqs 13 out of 15
Neff 2.2
Searched_HMMs 13730
Date Mon Mar 25 04:06:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020513.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020513hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fxkc_ a.2.5.1 (C:) Prefoldin 48.0 18 0.0013 26.3 5.8 44 229-276 85-128 (133)
2 d2c0sa1 a.30.7.1 (A:1-57) Hypo 43.4 2.1 0.00015 30.4 -0.2 14 1-14 32-45 (57)
3 d1ez3a_ a.47.2.1 (A:) Syntaxin 42.2 47 0.0034 23.8 7.3 61 97-157 11-78 (124)
4 d1h3la_ a.177.1.1 (A:) Sigma f 25.3 14 0.001 24.3 1.6 14 260-273 28-41 (75)
5 d2gtsa1 a.25.5.1 (A:4-80) Hypo 23.3 11 0.00084 27.4 0.9 32 17-48 22-54 (77)
6 d1seta1 a.2.7.1 (A:1-110) Sery 21.1 1.3E+02 0.0094 21.1 8.4 21 263-283 63-83 (110)
7 d1v9da_ a.207.1.1 (A:) Diaphan 20.4 1.8E+02 0.013 23.7 8.2 81 82-162 191-278 (332)
8 d1skva_ a.30.5.1 (A:) Hypothet 15.0 48 0.0035 23.5 2.6 26 98-123 24-56 (64)
9 d1u00a1 a.8.4.1 (A:504-615) Ch 12.6 2.3E+02 0.017 20.0 8.0 51 138-188 28-79 (112)
10 d1nlwa_ a.38.1.1 (A:) Mad prot 12.1 2E+02 0.014 19.0 5.2 31 131-161 47-77 (79)
No 1
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=47.99 E-value=18 Score=26.34 Aligned_cols=44 Identities=20% Similarity=0.293 Sum_probs=26.7
Q ss_pred chHHHHHhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 020513 229 NLKEKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAEL 276 (325)
Q Consensus 229 ~l~~kme~Ms~qi~eyE~LvkQLKeELreEKlKAKEEAEDLtQEMAEL 276 (325)
.+.+-++-+-++|..++..++.|..++ -+.+..+..+.++|.++
T Consensus 85 ~~~eA~~~l~~ri~~l~~~~~~l~~~~----~~~~~~i~~l~~~~~~l 128 (133)
T d1fxkc_ 85 NFEDAMESIKSQKNELESTLQKMGENL----RAITDIMMKLSPQAEEL 128 (133)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 444666667778877666665554443 44555566666666655
No 2
>d2c0sa1 a.30.7.1 (A:1-57) Hypothetical protein BAS4809, C-terminal domain {Bacillus anthracis [TaxId: 1392]}
Probab=43.44 E-value=2.1 Score=30.37 Aligned_cols=14 Identities=43% Similarity=0.567 Sum_probs=11.0
Q ss_pred CcchhhhhhhHHHh
Q 020513 1 MNCSQEIDYLQDQL 14 (325)
Q Consensus 1 lNC~QEIDYLqDQL 14 (325)
+.||||||.|-..+
T Consensus 32 l~~SQELD~LIN~~ 45 (57)
T d2c0sa1 32 ISFSQELDRLLNLL 45 (57)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 36999999986654
No 3
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=42.18 E-value=47 Score=23.79 Aligned_cols=61 Identities=10% Similarity=0.268 Sum_probs=37.6
Q ss_pred chhhhhhhHHHHHHHHHHHhhhhhhhH-------HHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHH
Q 020513 97 EIESLKIDMIALEQTCVEAKKVHKENV-------QEKARMNSLIKELEVRTQDSQEIIECLDKENKEL 157 (325)
Q Consensus 97 EIESmKLD~~aLEQ~lfdA~k~q~et~-------~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL 157 (325)
+|+.++-+|..|...+-.-...+..++ .-+++|+.++.+........+.-++.|++.|++.
T Consensus 11 eV~~Ir~~I~~i~~~v~~i~~~~~~~l~~~~~~~~~~~~l~~~~~~i~~~a~~ik~~Lk~l~~~~~~~ 78 (124)
T d1ez3a_ 11 QVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQE 78 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455555555555554444443333222 2367788888888877777777777777776653
No 4
>d1h3la_ a.177.1.1 (A:) Sigma factor SigR {Streptomyces coelicolor a3(2) [TaxId: 100226]}
Probab=25.30 E-value=14 Score=24.26 Aligned_cols=14 Identities=43% Similarity=0.544 Sum_probs=11.9
Q ss_pred hhhhhHHHHHHHHH
Q 020513 260 FKAKEEAEDLAQEM 273 (325)
Q Consensus 260 lKAKEEAEDLtQEM 273 (325)
.+-.++|||++||+
T Consensus 28 ~~d~~~aeDivQd~ 41 (75)
T d1h3la_ 28 TRNPADAEDLVQET 41 (75)
T ss_dssp HSCHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHH
Confidence 45679999999996
No 5
>d2gtsa1 a.25.5.1 (A:4-80) Hypothetical protein HP0062 {Helicobacter pylori [TaxId: 210]}
Probab=23.31 E-value=11 Score=27.44 Aligned_cols=32 Identities=34% Similarity=0.396 Sum_probs=20.6
Q ss_pred hhhhhhhhhhhhhhhhhhh-ccccchHHHHHHH
Q 020513 17 RNEEVYSLSEHVHSLELKL-VDMEILQDKVGQL 48 (325)
Q Consensus 17 Rn~Evn~l~EHih~LElKL-~~~e~l~e~V~~l 48 (325)
-|.|||.|+-|.|+|+-=- ..-++|-+-+..|
T Consensus 22 lndevngls~hf~nl~swqd~~rd~fsevldnl 54 (77)
T d2gtsa1 22 LREEVNSLSNHFHNLESWRDARRDKFSEVLDNL 54 (77)
T ss_dssp HHHHHHHHHHHHTTCSSCCSHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHhhcchHhhhhhhHhHHHHHHHHH
Confidence 4789999999999998422 2233444444433
No 6
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=21.15 E-value=1.3e+02 Score=21.08 Aligned_cols=21 Identities=29% Similarity=0.227 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhh
Q 020513 263 KEEAEDLAQEMAELRYQMTSL 283 (325)
Q Consensus 263 KEEAEDLtQEMAELRYQmTgl 283 (325)
+++++.|-++|..|+-+++.+
T Consensus 63 ~~~~~~l~~~~k~lk~~i~~l 83 (110)
T d1seta1 63 PEEKEALIARGKALGEEAKRL 83 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHH
Confidence 567788888888887666543
No 7
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.38 E-value=1.8e+02 Score=23.70 Aligned_cols=81 Identities=14% Similarity=0.211 Sum_probs=49.1
Q ss_pred HHHhhhhccccccccchhhhhhhHHHHHHHHHHHhhhhh-------hhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhh
Q 020513 82 KLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHK-------ENVQEKARMNSLIKELEVRTQDSQEIIECLDKEN 154 (325)
Q Consensus 82 KLEEsisS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~q~-------et~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~ken 154 (325)
.+.+-++++.--|..-++.+.-|+..|...+-...+--+ ..-.....|...+......+...+.....+...-
T Consensus 191 ~~~~eL~~v~~ask~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~d~f~~~~~~Fl~~a~~~l~~l~~~~~~~~~~~ 270 (332)
T d1v9da_ 191 KFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLY 270 (332)
T ss_dssp SGGGGCTTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHTCCCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445666666777777788888877776654432211 1112346677777777666666666666666666
Q ss_pred HHHHHhhh
Q 020513 155 KELKEKLD 162 (325)
Q Consensus 155 keL~ekl~ 162 (325)
+++..-+.
T Consensus 271 ~~~~~yfg 278 (332)
T d1v9da_ 271 KELGDYFV 278 (332)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhC
Confidence 66655553
No 8
>d1skva_ a.30.5.1 (A:) Hypothetical protein D-63 {Sulfolobus virus-like particle SSV1 [TaxId: 244589]}
Probab=14.95 E-value=48 Score=23.50 Aligned_cols=26 Identities=31% Similarity=0.452 Sum_probs=20.9
Q ss_pred hhhhhhhHH-------HHHHHHHHHhhhhhhhH
Q 020513 98 IESLKIDMI-------ALEQTCVEAKKVHKENV 123 (325)
Q Consensus 98 IESmKLD~~-------aLEQ~lfdA~k~q~et~ 123 (325)
|--||+|.+ .+|.|+|-+.|+|-|--
T Consensus 24 ih~ikID~it~nydk~k~erAlFlsqkIqaELY 56 (64)
T d1skva_ 24 IHEIKIDRITGNMDKQKLGKAYFQVQKIEAELY 56 (64)
T ss_dssp HHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 556788876 49999999999997754
No 9
>d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]}
Probab=12.56 E-value=2.3e+02 Score=19.98 Aligned_cols=51 Identities=12% Similarity=0.132 Sum_probs=35.3
Q ss_pred HHhHhHHHHHHHHHHhhHHHHHhhhhccchh-HHHHHHhHHHHhhhhhhhhh
Q 020513 138 VRTQDSQEIIECLDKENKELKEKLDSYETNG-RVFCQKIEEWMEKEDRKQLD 188 (325)
Q Consensus 138 ~q~q~Aq~~i~~L~kenkeL~ekl~~se~n~-r~~~q~~~e~le~ed~~~l~ 188 (325)
-.-.+|...|-.+++-.++...+|+..++.. ....+....|+.+.|...+.
T Consensus 28 e~~n~ae~~i~~~e~~L~e~~~~L~~~e~~~i~~~i~~l~~~l~~~d~~~I~ 79 (112)
T d1u00a1 28 EQKVEAARVLESLHGALAADAALLSAAERQVIDDAAAHLSEVAQGDDVDAIE 79 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHTTSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhCCHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 3444567777777777788888888776654 34467778888877665554
No 10
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.05 E-value=2e+02 Score=19.02 Aligned_cols=31 Identities=32% Similarity=0.446 Sum_probs=21.4
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHhhHHHHHhh
Q 020513 131 SLIKELEVRTQDSQEIIECLDKENKELKEKL 161 (325)
Q Consensus 131 ~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl 161 (325)
..|+.|+...+....-++.|..++..|+.++
T Consensus 47 ~yI~~L~~~~~~l~~~~~~L~~~~~~L~~~l 77 (79)
T d1nlwa_ 47 LHIKKLEDSDRKAVHQIDQLQREQRHLKRQL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666666667777777777777665
Done!