BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020514
(325 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224110804|ref|XP_002315641.1| predicted protein [Populus trichocarpa]
gi|222864681|gb|EEF01812.1| predicted protein [Populus trichocarpa]
Length = 396
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 214/307 (69%), Positives = 254/307 (82%), Gaps = 9/307 (2%)
Query: 1 MDSQLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAE 60
M+SQL LIE+SFN RY+ WV EAL+ELP +FTITDP+ISGHPIVFAS GFLKMSGF R +
Sbjct: 1 MESQLALIEKSFNTRYSPWVREALEELPHNFTITDPTISGHPIVFASPGFLKMSGFRRDQ 60
Query: 61 IIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED 120
+IG NGRMFQGP+TNR+T+MEIREAIREER ++V+L NY+KDGTPFWMLF+MS VF KED
Sbjct: 61 VIGNNGRMFQGPKTNRKTVMEIREAIREERAVQVSLWNYRKDGTPFWMLFQMSPVFSKED 120
Query: 121 GRATHFVAVQVPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLA 180
GR HF+ VQVPI+ K ++DG + EIVFGSCRREVCSDSL++L RVLA
Sbjct: 121 GRVIHFIGVQVPILRNKR-------STDDGADAAWNEIVFGSCRREVCSDSLVELGRVLA 173
Query: 181 LD--SDDTGLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGF 238
LD ++ G+E E+ EASDLEK++AAT I+NILSVLTHYS+ TGRL CGKRCS P G
Sbjct: 174 LDTYTNCRGVETEEPWEASDLEKQRAATTINNILSVLTHYSESTGRLACGKRCSSPAAGL 233
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
I+SSL ISLGRI QSFVLIDPHLP+MP+VYASDAFLKLTGYDR+EV+G N RFL+GV TD
Sbjct: 234 INSSLNISLGRINQSFVLIDPHLPNMPIVYASDAFLKLTGYDRHEVLGCNWRFLSGVGTD 293
Query: 299 TTVLYQV 305
++VL Q+
Sbjct: 294 SSVLNQI 300
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 69/126 (54%), Gaps = 9/126 (7%)
Query: 6 GLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN 65
GLI S N +L + SF + DP + PIV+AS FLK++G+ R E++G N
Sbjct: 232 GLINSSLN--------ISLGRINQSFVLIDPHLPNMPIVYASDAFLKLTGYDRHEVLGCN 283
Query: 66 GRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATH 125
R G T+ + +I+E+++ E+ V LNY+KD + FW L MS V G+ +
Sbjct: 284 WRFLSGVGTDSSVLNQIQESMQVEQACTVCFLNYRKDKSTFWNLLHMSPV-RNATGKIAY 342
Query: 126 FVAVQV 131
FV VQ+
Sbjct: 343 FVGVQM 348
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 38/64 (59%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
+L + +F + DP + P+V+AS FLK++G+ R++V+G N R G T+ + ++
Sbjct: 23 ALEELPHNFTITDPTISGHPIVFASPGFLKMSGFRRDQVIGNNGRMFQGPKTNRKTVMEI 82
Query: 306 SIAI 309
AI
Sbjct: 83 REAI 86
>gi|224102353|ref|XP_002312647.1| predicted protein [Populus trichocarpa]
gi|222852467|gb|EEE90014.1| predicted protein [Populus trichocarpa]
Length = 396
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 217/331 (65%), Positives = 264/331 (79%), Gaps = 19/331 (5%)
Query: 1 MDSQLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAE 60
M+SQL IEQS N RY+LWV E LDEL +FTITDP+I+GHPIVFAS GFLKMSGFSR +
Sbjct: 1 MESQLAPIEQSLNARYSLWVREDLDELRHNFTITDPNITGHPIVFASPGFLKMSGFSREQ 60
Query: 61 IIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED 120
++G NGR+FQGP+TNR+T+MEIREAIREER + V LLNY+KDGTPFWMLF+MS VF KED
Sbjct: 61 VVGNNGRIFQGPKTNRKTVMEIREAIREERAVRVRLLNYRKDGTPFWMLFQMSPVFSKED 120
Query: 121 GRATHFVAVQVPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLA 180
G HF+ VQVPI K + ++DG + EI FGSCRREVCSDSL++L RVLA
Sbjct: 121 GGVVHFIGVQVPIRRNKKL-------TDDGADAACNEIAFGSCRREVCSDSLVELTRVLA 173
Query: 181 LDSDDT--GLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGF 238
LD+D G++IE+SCEAS+LEK++AATAI++ILSVLT S+ TGR+VCGKRCSLP G
Sbjct: 174 LDTDTNCKGVKIEESCEASELEKQRAATAINDILSVLTGCSESTGRMVCGKRCSLPAAGL 233
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
I+SSL ISLGRIKQSFVLIDPHLP+MP+VYASDAFLKLTGYDR+EV+G++ FLNGVDTD
Sbjct: 234 INSSLNISLGRIKQSFVLIDPHLPNMPVVYASDAFLKLTGYDRHEVLGRDWNFLNGVDTD 293
Query: 299 TTVLYQV----------SIAISPYPKKKSIY 319
+++L+QV ++ I Y K KS +
Sbjct: 294 SSILHQVQESIQVEQPCTVCILNYRKDKSTF 324
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 71/126 (56%), Gaps = 9/126 (7%)
Query: 6 GLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN 65
GLI S N +L + SF + DP + P+V+AS FLK++G+ R E++GR+
Sbjct: 232 GLINSSLN--------ISLGRIKQSFVLIDPHLPNMPVVYASDAFLKLTGYDRHEVLGRD 283
Query: 66 GRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATH 125
G T+ + +++E+I+ E+P V +LNY+KD + FW L MS V G+ +
Sbjct: 284 WNFLNGVDTDSSILHQVQESIQVEQPCTVCILNYRKDKSTFWNLLHMSPV-RNATGKIAY 342
Query: 126 FVAVQV 131
FV VQ+
Sbjct: 343 FVGVQM 348
>gi|255558228|ref|XP_002520141.1| twin lov protein, putative [Ricinus communis]
gi|223540633|gb|EEF42196.1| twin lov protein, putative [Ricinus communis]
Length = 375
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 207/299 (69%), Positives = 248/299 (82%), Gaps = 6/299 (2%)
Query: 7 LIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNG 66
LI+QSFN RY+ EAL+ LPD FTITDP ISGHPI+FAS GF K+SGF + EIIG+NG
Sbjct: 12 LIQQSFNTRYSFSAREALNGLPDCFTITDPYISGHPIIFASDGFSKLSGFPKDEIIGKNG 71
Query: 67 RMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHF 126
R+FQGP+TNRR+IMEIREAIREER ++++LLNY+KDGTPFW+LF M+ VF K+DGR HF
Sbjct: 72 RIFQGPKTNRRSIMEIREAIREERALQISLLNYRKDGTPFWLLFHMTPVFNKKDGRVVHF 131
Query: 127 VAVQVPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDT 186
VAVQVPI+ R++ G + SEDG G LREIVFGSCRREVCSDSL++L RVL+LDSD
Sbjct: 132 VAVQVPILKRRN----GSALSEDGSG--LREIVFGSCRREVCSDSLVELGRVLSLDSDSR 185
Query: 187 GLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYIS 246
G IE+ C AS+ EKRKA TAI++ILSVLT+YS+ G LVC KRC+L G G ISSSL IS
Sbjct: 186 GSNIEEPCVASEAEKRKAVTAINSILSVLTNYSECNGELVCAKRCNLVGAGMISSSLNIS 245
Query: 247 LGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
LGRI+QSFVL DPHLPDMP+VYASDAFLKLTGY R+EV+ +NCRFL G+DTD +V+ Q+
Sbjct: 246 LGRIRQSFVLTDPHLPDMPIVYASDAFLKLTGYARHEVLWRNCRFLGGIDTDRSVIEQI 304
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 63/101 (62%), Gaps = 3/101 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
+L + SF +TDP + PIV+AS FLK++G++R E++ RN R G T+R I +I
Sbjct: 245 SLGRIRQSFVLTDPHLPDMPIVYASDAFLKLTGYARHEVLWRNCRFLGGIDTDRSVIEQI 304
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLV---FGKED 120
++ I+ E+ V +LNY+++ T FW L +S V GKE+
Sbjct: 305 KKNIQAEQACTVRILNYRRNKTTFWNLLHISPVRNATGKEE 345
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 39/64 (60%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
+L + F + DP++ P+++ASD F KL+G+ ++E++G+N R G T+ + ++
Sbjct: 28 ALNGLPDCFTITDPYISGHPIIFASDGFSKLSGFPKDEIIGKNGRIFQGPKTNRRSIMEI 87
Query: 306 SIAI 309
AI
Sbjct: 88 REAI 91
>gi|225424899|ref|XP_002269901.1| PREDICTED: protein TWIN LOV 1 [Vitis vinifera]
Length = 397
Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust.
Identities = 216/314 (68%), Positives = 255/314 (81%), Gaps = 7/314 (2%)
Query: 1 MDSQLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAE 60
M+SQL LIEQSFN RY++WV EALDELPD+FTITDPSISGHPIVFASRGFLKMSG+S+ E
Sbjct: 1 MESQLALIEQSFNYRYSVWVREALDELPDNFTITDPSISGHPIVFASRGFLKMSGYSKEE 60
Query: 61 IIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED 120
+IG+NGR FQGP T+RR+I EI+EAI+EER I+ LLNY+KDGTP WMLF MS VF KED
Sbjct: 61 VIGKNGRAFQGPGTSRRSITEIQEAIQEERTIQTILLNYRKDGTPIWMLFHMSPVFSKED 120
Query: 121 GRATHFVAVQVPIVSRKHMRNSGMSYSEDG---GGSRLREIVFGSCRREVCSDSLLDLDR 177
GR HFVAVQVP+ SRK R SG DG G R R+IVFGSCRREVCSDS+L+L+
Sbjct: 121 GRVIHFVAVQVPM-SRKP-RWSGSGPGRDGVCEDGCRSRDIVFGSCRREVCSDSVLELEH 178
Query: 178 VLALDS--DDTGLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPG 235
VLA +S D + E+ EASD EKR+AA A++NILS+LTHYS+LTG+LVC KRC+L G
Sbjct: 179 VLAFESLFDSDNRDDEEPREASDQEKRRAAAAVNNILSLLTHYSELTGKLVCEKRCTLSG 238
Query: 236 MGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGV 295
+G + +SL ISLGRIKQSFVL DPHLP+MP+VYASDAFLKLTGY R+EV+G C FL+GV
Sbjct: 239 IGLLGASLIISLGRIKQSFVLTDPHLPEMPIVYASDAFLKLTGYARHEVLGCQCMFLSGV 298
Query: 296 DTDTTVLYQVSIAI 309
DTD + L QV +I
Sbjct: 299 DTDPSTLLQVKESI 312
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 66/109 (60%), Gaps = 1/109 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
+L + SF +TDP + PIV+AS FLK++G++R E++G G T+ T++++
Sbjct: 249 SLGRIKQSFVLTDPHLPEMPIVYASDAFLKLTGYARHEVLGCQCMFLSGVDTDPSTLLQV 308
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+E+I+ E+ V +LNY+KD + FW L +S V G+ + V VQ+
Sbjct: 309 KESIQTEQACTVRILNYRKDRSSFWNLLHISPVRNA-SGKIAYSVWVQM 356
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
+L + +F + DP + P+V+AS FLK++GY + EV+G+N R G T + ++
Sbjct: 23 ALDELPDNFTITDPSISGHPIVFASRGFLKMSGYSKEEVIGKNGRAFQGPGTSRRSITEI 82
Query: 306 SIAISPYPKKKSIYMEY 322
AI ++I + Y
Sbjct: 83 QEAIQEERTIQTILLNY 99
>gi|297817884|ref|XP_002876825.1| pac motif-containing protein [Arabidopsis lyrata subsp. lyrata]
gi|297322663|gb|EFH53084.1| pac motif-containing protein [Arabidopsis lyrata subsp. lyrata]
Length = 386
Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust.
Identities = 194/302 (64%), Positives = 239/302 (79%), Gaps = 8/302 (2%)
Query: 9 EQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM 68
E SFN RYTLW+ EAL+ELP +FTITDP ISGHPIVFAS GFLKM+G+SR E+IGRNG++
Sbjct: 9 EDSFNGRYTLWITEALEELPHNFTITDPFISGHPIVFASLGFLKMTGYSREEVIGRNGKV 68
Query: 69 FQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVA 128
FQGP+TNRR+IMEIREAIREER + V+LLNY+K G+PFWMLF MS VFG++DG+ +FVA
Sbjct: 69 FQGPKTNRRSIMEIREAIREERSVMVSLLNYRKSGSPFWMLFHMSPVFGRDDGKVINFVA 128
Query: 129 VQVPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDD-TG 187
VQVPI ++H + MS S E+VFGSCRREVC S + +R ++ DD G
Sbjct: 129 VQVPISGQEHRKLGVMS-------SDHSELVFGSCRREVCFGSFVHQNRASPVECDDEQG 181
Query: 188 LEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISL 247
LE + CEAS+ EK KA A++N+LS+LT YS+L+GRLVCGKR L G+ +SSSL ISL
Sbjct: 182 LEDWEHCEASESEKLKAVEAVNNVLSILTRYSELSGRLVCGKRYCLRGVDCLSSSLVISL 241
Query: 248 GRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSI 307
GRIKQSFVL +P LPDMP++YASDAFL LTGY R EV+GQNCRFL+GVDTD++VLY++
Sbjct: 242 GRIKQSFVLTNPCLPDMPIIYASDAFLTLTGYKRQEVLGQNCRFLSGVDTDSSVLYEIKE 301
Query: 308 AI 309
I
Sbjct: 302 CI 303
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 65/116 (56%), Gaps = 3/116 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
+L + SF +T+P + PI++AS FL ++G+ R E++G+N R G T+ + EI
Sbjct: 240 SLGRIKQSFVLTNPCLPDMPIIYASDAFLTLTGYKRQEVLGQNCRFLSGVDTDSSVLYEI 299
Query: 83 REAIREERPIEVNLLNY--KKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+E I + + V +LNY +KD + FW L +S V G+ +FV VQV R
Sbjct: 300 KECILKGQSCTVQILNYSNRKDKSSFWNLLHISPV-RNASGKTAYFVGVQVEASCR 354
>gi|18395411|ref|NP_565288.1| protein TWIN LOV 1 [Arabidopsis thaliana]
gi|75099072|sp|O64511.2|TLOV1_ARATH RecName: Full=Protein TWIN LOV 1
gi|15010682|gb|AAK74000.1| At2g02710/T20F6.15 [Arabidopsis thaliana]
gi|16323302|gb|AAL15406.1| At2g02710/T20F6.15 [Arabidopsis thaliana]
gi|20196957|gb|AAC05351.2| putative receptor-like protein kinase [Arabidopsis thaliana]
gi|330250520|gb|AEC05614.1| protein TWIN LOV 1 [Arabidopsis thaliana]
Length = 399
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 194/301 (64%), Positives = 237/301 (78%), Gaps = 5/301 (1%)
Query: 11 SFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQ 70
SF+ RYTLW+ EAL+ELP +FTITDP ISGHPIVFAS GFLKM+G+SR E+IGRNG++FQ
Sbjct: 19 SFSGRYTLWIKEALEELPHNFTITDPFISGHPIVFASLGFLKMTGYSREEVIGRNGKVFQ 78
Query: 71 GPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
GP+TNRR+IMEIREAIREER ++V+LLNY+K G+PFWMLF M VFGK+DG+ T+FVAVQ
Sbjct: 79 GPKTNRRSIMEIREAIREERSVQVSLLNYRKSGSPFWMLFHMCPVFGKDDGKVTNFVAVQ 138
Query: 131 VPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDD--TGL 188
VPI R+H R + G S FGSCRREVC + + DR L ++ DD GL
Sbjct: 139 VPISGREHHRKKLRNV---GDLSSDTSPTFGSCRREVCFGNFVCQDRALPVECDDDEQGL 195
Query: 189 EIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLG 248
E + CEAS+ EK KA AI+N+LS+L HYS+L+GRLVCGKR L G+ +SSSL ISLG
Sbjct: 196 EDWEQCEASESEKLKATEAINNVLSILVHYSELSGRLVCGKRYCLRGVDCLSSSLVISLG 255
Query: 249 RIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIA 308
RIKQSFVL +P LPDMP++YASDAFL LTGY R EV+GQNCRFL+GVDTD++VLY++
Sbjct: 256 RIKQSFVLTNPCLPDMPIIYASDAFLTLTGYKRQEVLGQNCRFLSGVDTDSSVLYEMKEC 315
Query: 309 I 309
I
Sbjct: 316 I 316
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 65/116 (56%), Gaps = 3/116 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
+L + SF +T+P + PI++AS FL ++G+ R E++G+N R G T+ + E+
Sbjct: 253 SLGRIKQSFVLTNPCLPDMPIIYASDAFLTLTGYKRQEVLGQNCRFLSGVDTDSSVLYEM 312
Query: 83 REAIREERPIEVNLLNY--KKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+E I + + V +LNY +KD + FW L +S V G+ +FV VQV R
Sbjct: 313 KECILKGQSCTVQILNYSNRKDKSSFWNLLHISPV-RNASGKTAYFVGVQVEASCR 367
>gi|30678020|ref|NP_849928.1| protein TWIN LOV 1 [Arabidopsis thaliana]
gi|18146960|dbj|BAB83170.1| twin LOV protein 1 [Arabidopsis thaliana]
gi|330250519|gb|AEC05613.1| protein TWIN LOV 1 [Arabidopsis thaliana]
Length = 397
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 198/327 (60%), Positives = 246/327 (75%), Gaps = 15/327 (4%)
Query: 11 SFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQ 70
SF+ RYTLW+ EAL+ELP +FTITDP ISGHPIVFAS GFLKM+G+SR E+IGRNG++FQ
Sbjct: 19 SFSGRYTLWIKEALEELPHNFTITDPFISGHPIVFASLGFLKMTGYSREEVIGRNGKVFQ 78
Query: 71 GPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
GP+TNRR+IMEIREAIREER ++V+LLNY+K G+PFWMLF M VFGK+DG+ T+FVAVQ
Sbjct: 79 GPKTNRRSIMEIREAIREERSVQVSLLNYRKSGSPFWMLFHMCPVFGKDDGKVTNFVAVQ 138
Query: 131 VPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDD--TGL 188
VPI R+H R + G S FGSCRREVC + + DR L ++ DD GL
Sbjct: 139 VPISGREHHRKKLRNV---GDLSSDTSPTFGSCRREVCFGNFVCQDRALPVECDDDEQGL 195
Query: 189 EIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLG 248
E + CEAS+ EK KA AI+N+LS+L HYS+L+GRLVCGKR L G+ +SSSL ISLG
Sbjct: 196 EDWEQCEASESEKLKATEAINNVLSILVHYSELSGRLVCGKRYCLRGVDCLSSSLVISLG 255
Query: 249 RIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV--- 305
RIKQSFVL +P LPDMP++YASDAFL LTGY R EV+GQNCRFL+GVDTD++VLY++
Sbjct: 256 RIKQSFVLTNPCLPDMPIIYASDAFLTLTGYKRQEVLGQNCRFLSGVDTDSSVLYEMKEC 315
Query: 306 -------SIAISPYPKKKSIYMEYVRV 325
++ I Y K KS + + +
Sbjct: 316 ILKGQSCTVQILNYRKDKSSFWNLLHI 342
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
+L + SF +T+P + PI++AS FL ++G+ R E++G+N R G T+ + E+
Sbjct: 253 SLGRIKQSFVLTNPCLPDMPIIYASDAFLTLTGYKRQEVLGQNCRFLSGVDTDSSVLYEM 312
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+E I + + V +LNY+KD + FW L +S V G+ +FV VQV R
Sbjct: 313 KECILKGQSCTVQILNYRKDKSSFWNLLHISPV-RNASGKTAYFVGVQVEASCR 365
>gi|42570655|ref|NP_973401.1| protein TWIN LOV 1 [Arabidopsis thaliana]
gi|330250518|gb|AEC05612.1| protein TWIN LOV 1 [Arabidopsis thaliana]
Length = 358
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 198/327 (60%), Positives = 245/327 (74%), Gaps = 15/327 (4%)
Query: 11 SFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQ 70
SF+ RYTLW+ EAL+ELP +FTITDP ISGHPIVFAS GFLKM+G+SR E+IGRNG++FQ
Sbjct: 19 SFSGRYTLWIKEALEELPHNFTITDPFISGHPIVFASLGFLKMTGYSREEVIGRNGKVFQ 78
Query: 71 GPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
GP+TNRR+IMEIREAIREER ++V+LLNY+K G+PFWMLF M VFGK+DG+ T+FVAVQ
Sbjct: 79 GPKTNRRSIMEIREAIREERSVQVSLLNYRKSGSPFWMLFHMCPVFGKDDGKVTNFVAVQ 138
Query: 131 VPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDD--TGL 188
VPI R+H R G S FGSCRREVC + + DR L ++ DD GL
Sbjct: 139 VPISGREHHRK---KLRNVGDLSSDTSPTFGSCRREVCFGNFVCQDRALPVECDDDEQGL 195
Query: 189 EIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLG 248
E + CEAS+ EK KA AI+N+LS+L HYS+L+GRLVCGKR L G+ +SSSL ISLG
Sbjct: 196 EDWEQCEASESEKLKATEAINNVLSILVHYSELSGRLVCGKRYCLRGVDCLSSSLVISLG 255
Query: 249 RIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV--- 305
RIKQSFVL +P LPDMP++YASDAFL LTGY R EV+GQNCRFL+GVDTD++VLY++
Sbjct: 256 RIKQSFVLTNPCLPDMPIIYASDAFLTLTGYKRQEVLGQNCRFLSGVDTDSSVLYEMKEC 315
Query: 306 -------SIAISPYPKKKSIYMEYVRV 325
++ I Y K KS + + +
Sbjct: 316 ILKGQSCTVQILNYRKDKSSFWNLLHI 342
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 56/93 (60%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
+L + SF +T+P + PI++AS FL ++G+ R E++G+N R G T+ + E+
Sbjct: 253 SLGRIKQSFVLTNPCLPDMPIIYASDAFLTLTGYKRQEVLGQNCRFLSGVDTDSSVLYEM 312
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLV 115
+E I + + V +LNY+KD + FW L +S V
Sbjct: 313 KECILKGQSCTVQILNYRKDKSSFWNLLHISPV 345
>gi|350537683|ref|NP_001234816.1| LOV/LOV protein [Solanum lycopersicum]
gi|311692316|dbj|BAJ24889.1| LOV/LOV protein [Solanum lycopersicum]
Length = 398
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 187/317 (58%), Positives = 242/317 (76%), Gaps = 10/317 (3%)
Query: 1 MDSQLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAE 60
M+SQLGLIE+SFN +Y+ V EALDELPDSFTITDPSISGHPIV+ SRGFLK+ G+S+ E
Sbjct: 1 MESQLGLIEKSFNVKYSDGVREALDELPDSFTITDPSISGHPIVYVSRGFLKVFGYSKNE 60
Query: 61 IIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED 120
++G+NGR+FQGP+TNRR++M IREAIREER I+++LLNY+KDGTPFWMLF M V+ ++D
Sbjct: 61 VLGKNGRVFQGPKTNRRSVMAIREAIREERGIQISLLNYRKDGTPFWMLFNMCPVYSEKD 120
Query: 121 GRATHFVAVQVPIVSRKH----MRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLD 176
GR HF+ +QVPI+ R++ DGG R V+ CRREVCS+S++++D
Sbjct: 121 GRVVHFLGIQVPILRRRNSLGGGIGRNGGVCYDGGN--CRGYVYKCCRREVCSNSMMEMD 178
Query: 177 RVLALDS----DDTGLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCS 232
R L++DS D T +++E CEASD EK KA+ A++NI+SVL +YS+L GRLV +RC
Sbjct: 179 RALSVDSVSGLDHTEVDVEGPCEASDQEKTKASVAVNNIMSVLANYSELNGRLVIDRRCC 238
Query: 233 LPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFL 292
G +S+SL IS GRIKQSFVL D HLPDMP+VYASDAFLKL GY R+EV+G+NCRFL
Sbjct: 239 QSGTSLLSASLNISFGRIKQSFVLTDAHLPDMPIVYASDAFLKLIGYLRHEVLGRNCRFL 298
Query: 293 NGVDTDTTVLYQVSIAI 309
+G DT+ +Q+ I
Sbjct: 299 SGEDTERGTQFQIKQCI 315
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 65/109 (59%), Gaps = 1/109 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
+ + SF +TD + PIV+AS FLK+ G+ R E++GRN R G T R T +I
Sbjct: 252 SFGRIKQSFVLTDAHLPDMPIVYASDAFLKLIGYLRHEVLGRNCRFLSGEDTERGTQFQI 311
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
++ I+ E+P V++LNY+KDGT FW +S + G+ +FV +Q+
Sbjct: 312 KQCIQNEQPCTVHILNYRKDGTSFWNFLHISPI-RSASGKVAYFVGIQI 359
>gi|449434827|ref|XP_004135197.1| PREDICTED: protein TWIN LOV 1-like [Cucumis sativus]
Length = 385
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 189/337 (56%), Positives = 244/337 (72%), Gaps = 23/337 (6%)
Query: 1 MDSQLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAE 60
M+ LGLIEQS N+RY+LWV EAL++L D+FTITDP I+GHPIVF S GFLKM+G+++ E
Sbjct: 1 MELPLGLIEQSLNSRYSLWVREALNDLSDNFTITDPCIAGHPIVFVSPGFLKMTGYTKEE 60
Query: 61 IIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED 120
+IG+NG+MFQGP T+R ++M IREA+REE+ I++NLLNY+KDGTPFW+ F+M+ VF KED
Sbjct: 61 VIGKNGKMFQGPETSRSSVMLIREAVREEKEIQINLLNYRKDGTPFWVFFQMTPVFSKED 120
Query: 121 GRATHFVAVQVPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLA 180
G+ HFV VQVPI+ G S GSCRRE+ SDS+ +LD L
Sbjct: 121 GQIIHFVGVQVPILKNSRKSRCGACKS-----------FLGSCRRELMSDSISELDCTLN 169
Query: 181 LDS--DDTGLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGF 238
DS D +EIE+ CEA D EK++AA AI NIL VLTH+S++TG LVC +RCSLP +G
Sbjct: 170 RDSQPDSNRVEIEEPCEACDDEKQRAAIAISNILFVLTHHSEVTGGLVCERRCSLPRVGI 229
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+ SSL SL RIKQSFVL DP+LPDMP+VYASD FLKLTGY R EV+G+NCRFL+G+DTD
Sbjct: 230 LCSSLNTSLNRIKQSFVLTDPNLPDMPIVYASDEFLKLTGYTRCEVLGRNCRFLSGIDTD 289
Query: 299 TTVLYQV----------SIAISPYPKKKSIYMEYVRV 325
++ L+++ ++ I Y K KS + + V
Sbjct: 290 SSTLFKIKESLQSEQACTVRILNYRKNKSSFWNDLHV 326
>gi|449530273|ref|XP_004172120.1| PREDICTED: protein TWIN LOV 1-like [Cucumis sativus]
Length = 382
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 190/337 (56%), Positives = 247/337 (73%), Gaps = 26/337 (7%)
Query: 1 MDSQLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAE 60
M+ LGLIEQS N+RY+LWV EAL++L D+FTITDP I+GHPIVF S GFLKM+G+++ E
Sbjct: 1 MELPLGLIEQSLNSRYSLWVREALNDLSDNFTITDPCIAGHPIVFVSPGFLKMTGYTKEE 60
Query: 61 IIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED 120
+IG+NG+MFQGP T+R ++M IREA+REE+ I++NLLNY+KDGTPFW+ F+M+ VF KED
Sbjct: 61 VIGKNGKMFQGPETSRSSVMLIREAVREEKEIQINLLNYRKDGTPFWVFFQMTPVFSKED 120
Query: 121 GRATHFVAVQVPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLA 180
G+ HFV VQVPI+ K+ R S + GSCRRE+ SDS+ +LD L
Sbjct: 121 GQIIHFVGVQVPIL--KNSRKSRCGF------------FLGSCRRELMSDSISELDCTLN 166
Query: 181 LDS--DDTGLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGF 238
DS D +EIE+ CEA D EK++AA AI NIL VLTH+S++TG LVC +RCSLP +G
Sbjct: 167 RDSQPDSNRVEIEEPCEACDDEKQRAAIAISNILFVLTHHSEVTGGLVCERRCSLPRVGI 226
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+ SSL SL RIKQSFVL DP+LPDMP+VYASD FLKLTGY R EV+G+NCRFL+G+DTD
Sbjct: 227 LCSSLNTSLNRIKQSFVLTDPNLPDMPIVYASDEFLKLTGYTRCEVLGRNCRFLSGIDTD 286
Query: 299 TTVLYQV----------SIAISPYPKKKSIYMEYVRV 325
++ L+++ ++ I Y K KS + + V
Sbjct: 287 SSTLFKIKESLQSEQACTVRILNYRKNKSSFWNDLHV 323
>gi|356498170|ref|XP_003517926.1| PREDICTED: protein TWIN LOV 1-like [Glycine max]
Length = 388
Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust.
Identities = 188/341 (55%), Positives = 244/341 (71%), Gaps = 30/341 (8%)
Query: 1 MDSQLG--LIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSR 58
M+ +LG I++SFN RYT ++LDELPDSFTITDPSI GHPIVFAS GFLK++G++
Sbjct: 3 MELELGSTTIQRSFNTRYTRHARDSLDELPDSFTITDPSIPGHPIVFASPGFLKLTGYAA 62
Query: 59 AEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGK 118
E++GR +FQGPRT+R++++EIREA+REER +V LLNY+KDGTPFWMLF++ VF
Sbjct: 63 REVLGRPAAIFQGPRTSRKSVIEIREAVREERNAQVVLLNYRKDGTPFWMLFRVCPVFSS 122
Query: 119 EDGRATHFVAVQVPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRV 178
+ G HFVAVQVP+ ++ GS +R+ FG CR+EVC+DSL ++ RV
Sbjct: 123 DGGAVVHFVAVQVPLQKKE--------------GSGVRDFGFGCCRKEVCADSLAEIGRV 168
Query: 179 LALDS----DDTGLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLP 234
+L+ D LE E+ CEASD EKR A A+DNI SVLTHYS+ TGRLVC KRCS+P
Sbjct: 169 CSLEQVLEPDVRELEREEPCEASDEEKRSAVNAMDNIFSVLTHYSEATGRLVCQKRCSIP 228
Query: 235 GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG 294
+G +S+SL ISLGRIKQSFVL +P L DMP+VYASDAFLKLTGY +NEV+G+NCRFL G
Sbjct: 229 DVGLLSTSLIISLGRIKQSFVLTNPRLSDMPIVYASDAFLKLTGYAKNEVLGRNCRFLGG 288
Query: 295 VDTDTTVLYQV----------SIAISPYPKKKSIYMEYVRV 325
DTDT+ L+ + ++ I Y K KS + ++ +
Sbjct: 289 TDTDTSTLHLIRESIKTEQPCTVRILNYRKDKSSFWNFLHI 329
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 69/109 (63%), Gaps = 1/109 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
+L + SF +T+P +S PIV+AS FLK++G+++ E++GRN R G T+ T+ I
Sbjct: 240 SLGRIKQSFVLTNPRLSDMPIVYASDAFLKLTGYAKNEVLGRNCRFLGGTDTDTSTLHLI 299
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
RE+I+ E+P V +LNY+KD + FW +S V G+ +FV VQ+
Sbjct: 300 RESIKTEQPCTVRILNYRKDKSSFWNFLHISPV-RDASGKVAYFVGVQI 347
>gi|358248936|ref|NP_001240221.1| protein TWIN LOV 1-like [Glycine max]
gi|156069000|gb|ABU44493.1| PAS/LOV protein 1 [Glycine max]
Length = 390
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 187/341 (54%), Positives = 245/341 (71%), Gaps = 30/341 (8%)
Query: 1 MDSQLG--LIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSR 58
++ +LG I++SF+ RYT ++L ELPDSFTITDPSI GHPIVFAS GFLK++G+S
Sbjct: 5 LEQELGSTTIQRSFDARYTRHARDSLGELPDSFTITDPSIPGHPIVFASPGFLKLTGYSL 64
Query: 59 AEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGK 118
E++GR +FQGPRT+R++++EIREA+REER +V LLNY++DGTPFWMLF++S VF
Sbjct: 65 REVLGRPAAIFQGPRTSRKSVIEIREAVREERNAQVVLLNYRRDGTPFWMLFRVSPVFSS 124
Query: 119 EDGRATHFVAVQVPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRV 178
+ G HFVAVQVP+ ++ GS +R+ FG CR+EVC DSL ++DRV
Sbjct: 125 DGGAVVHFVAVQVPLQKKE--------------GSGVRDFGFGCCRKEVCVDSLAEIDRV 170
Query: 179 LALDS----DDTGLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLP 234
+L+ D +E E+ CEASD EKR A TA+D+I SVLTHYS+ TGRLVC KR S+P
Sbjct: 171 CSLEQVLEPDVREVEREEPCEASDDEKRSAVTAMDSIFSVLTHYSEATGRLVCRKRSSIP 230
Query: 235 GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG 294
+G +S+SL ISLGRIKQSFVL +PHLPDMP+VYASDAFLKLTGY +NEV+G NCRFL G
Sbjct: 231 DVGLLSTSLIISLGRIKQSFVLTNPHLPDMPIVYASDAFLKLTGYAKNEVLGHNCRFLGG 290
Query: 295 VDTDTTVLYQV----------SIAISPYPKKKSIYMEYVRV 325
DTDT+ L+ + ++ I Y K KS + ++ +
Sbjct: 291 TDTDTSTLHLIRESIKTEQPCTVRILNYRKDKSSFWNFLHI 331
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 67/109 (61%), Gaps = 1/109 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
+L + SF +T+P + PIV+AS FLK++G+++ E++G N R G T+ T+ I
Sbjct: 242 SLGRIKQSFVLTNPHLPDMPIVYASDAFLKLTGYAKNEVLGHNCRFLGGTDTDTSTLHLI 301
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
RE+I+ E+P V +LNY+KD + FW +S V G+ +FV VQ+
Sbjct: 302 RESIKTEQPCTVRILNYRKDKSSFWNFLHISPV-RDASGKVAYFVGVQI 349
>gi|296086433|emb|CBI32022.3| unnamed protein product [Vitis vinifera]
Length = 345
Score = 334 bits (857), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 171/262 (65%), Positives = 206/262 (78%), Gaps = 7/262 (2%)
Query: 53 MSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKM 112
MSG+S+ E+IG+NGR FQGP T+RR+I EI+EAI+EER I+ LLNY+KDGTP WMLF M
Sbjct: 1 MSGYSKEEVIGKNGRAFQGPGTSRRSITEIQEAIQEERTIQTILLNYRKDGTPIWMLFHM 60
Query: 113 SLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSEDG---GGSRLREIVFGSCRREVCS 169
S VF KEDGR HFVAVQVP+ SRK R SG DG G R R+IVFGSCRREVCS
Sbjct: 61 SPVFSKEDGRVIHFVAVQVPM-SRKP-RWSGSGPGRDGVCEDGCRSRDIVFGSCRREVCS 118
Query: 170 DSLLDLDRVLALDS--DDTGLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVC 227
DS+L+L+ VLA +S D + E+ EASD EKR+AA A++NILS+LTHYS+LTG+LVC
Sbjct: 119 DSVLELEHVLAFESLFDSDNRDDEEPREASDQEKRRAAAAVNNILSLLTHYSELTGKLVC 178
Query: 228 GKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQ 287
KRC+L G+G + +SL ISLGRIKQSFVL DPHLP+MP+VYASDAFLKLTGY R+EV+G
Sbjct: 179 EKRCTLSGIGLLGASLIISLGRIKQSFVLTDPHLPEMPIVYASDAFLKLTGYARHEVLGC 238
Query: 288 NCRFLNGVDTDTTVLYQVSIAI 309
C FL+GVDTD + L QV +I
Sbjct: 239 QCMFLSGVDTDPSTLLQVKESI 260
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 66/109 (60%), Gaps = 1/109 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
+L + SF +TDP + PIV+AS FLK++G++R E++G G T+ T++++
Sbjct: 197 SLGRIKQSFVLTDPHLPEMPIVYASDAFLKLTGYARHEVLGCQCMFLSGVDTDPSTLLQV 256
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+E+I+ E+ V +LNY+KD + FW L +S V G+ + V VQ+
Sbjct: 257 KESIQTEQACTVRILNYRKDRSSFWNLLHISPVR-NASGKIAYSVWVQM 304
>gi|388511109|gb|AFK43618.1| unknown [Medicago truncatula]
Length = 394
Score = 316 bits (809), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 175/313 (55%), Positives = 225/313 (71%), Gaps = 19/313 (6%)
Query: 8 IEQSFNNRYTLWVHEALDELPDS--FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN 65
I++SF+ Y+ + E+L+EL + FTITDPS+S HPI+FAS FL ++GF+R E++GR+
Sbjct: 4 IKKSFDEFYSHYARESLEELSEEIPFTITDPSLSNHPIIFASHAFLNITGFTRDEVLGRS 63
Query: 66 GRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATH 125
G MFQG T RR++MEIREA+REER V L+NY+K+GTPFW+ +S VF + G H
Sbjct: 64 GSMFQGSATCRRSVMEIREAVREERETNVVLVNYRKNGTPFWVFLTVSPVFCVKSGAVVH 123
Query: 126 FVAVQVPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRV------L 179
FVAVQVP+ R + + + D +F CR+EVCSDSL++LDRV L
Sbjct: 124 FVAVQVPLKLRVYGGGGSVVVNHD--------FMFRCCRKEVCSDSLVELDRVSSRNQVL 175
Query: 180 ALDSDD---TGLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGM 236
L+ DD T LE E+ EASD E+R A TA+DNI SVLTHYS+LTGRLVC KRCS P +
Sbjct: 176 DLEHDDDDVTDLESEEPREASDDERRSAVTAMDNIFSVLTHYSELTGRLVCRKRCSNPAV 235
Query: 237 GFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296
G +SSSL ISLGRIKQSFVL +PHLPDMP+VYASDAF+KLTGY R+EV+G+NCRFL G +
Sbjct: 236 GLLSSSLIISLGRIKQSFVLTNPHLPDMPIVYASDAFMKLTGYTRDEVLGRNCRFLGGRN 295
Query: 297 TDTTVLYQVSIAI 309
TD + L + +I
Sbjct: 296 TDDSALQLIRESI 308
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 65/105 (61%), Gaps = 1/105 (0%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
+ SF +T+P + PIV+AS F+K++G++R E++GRN R G T+ + IRE+I
Sbjct: 249 IKQSFVLTNPHLPDMPIVYASDAFMKLTGYTRDEVLGRNCRFLGGRNTDDSALQLIRESI 308
Query: 87 REERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+ E+ V +LNY+KD + FW L +S V G+ +FV VQ+
Sbjct: 309 KTEKLCTVRILNYRKDKSSFWNLLHISPV-RDATGKVAYFVGVQI 352
>gi|357486599|ref|XP_003613587.1| Blue-light-activated histidine kinase [Medicago truncatula]
gi|355514922|gb|AES96545.1| Blue-light-activated histidine kinase [Medicago truncatula]
Length = 394
Score = 316 bits (809), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 175/313 (55%), Positives = 225/313 (71%), Gaps = 19/313 (6%)
Query: 8 IEQSFNNRYTLWVHEALDELPDS--FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN 65
I++SF+ Y+ + E+L+EL + FTITDPS+S HPI+FAS FL ++GF+R E++GR+
Sbjct: 4 IKKSFDEFYSHYARESLEELSEEIPFTITDPSLSNHPIIFASHAFLNITGFTRDEVLGRS 63
Query: 66 GRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATH 125
G MFQG T RR++MEIREA+REER V L+NY+K+GTPFW+ +S VF + G H
Sbjct: 64 GSMFQGSATCRRSVMEIREAVREERETNVVLVNYRKNGTPFWVFLTVSPVFCVKSGAVVH 123
Query: 126 FVAVQVPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRV------L 179
FVAVQVP+ R + + + D +F CR+EVCSDSL++LDRV L
Sbjct: 124 FVAVQVPLKLRVYGGGGSVVVNHD--------FMFRCCRKEVCSDSLVELDRVSSRNQVL 175
Query: 180 ALDSDD---TGLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGM 236
L+ DD T LE E+ EASD E+R A TA+DNI SVLTHYS+LTGRLVC KRCS P +
Sbjct: 176 DLEHDDDDVTDLESEEPREASDDERRSAVTAMDNIFSVLTHYSELTGRLVCRKRCSNPAV 235
Query: 237 GFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296
G +SSSL ISLGRIKQSFVL +PHLPDMP+VYASDAF+KLTGY R+EV+G+NCRFL G +
Sbjct: 236 GLLSSSLIISLGRIKQSFVLTNPHLPDMPIVYASDAFMKLTGYTRDEVLGRNCRFLGGRN 295
Query: 297 TDTTVLYQVSIAI 309
TD + L + +I
Sbjct: 296 TDDSALQLIRESI 308
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 65/105 (61%), Gaps = 1/105 (0%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
+ SF +T+P + PIV+AS F+K++G++R E++GRN R G T+ + IRE+I
Sbjct: 249 IKQSFVLTNPHLPDMPIVYASDAFMKLTGYTRDEVLGRNCRFLGGRNTDDSALQLIRESI 308
Query: 87 REERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+ E+ V +LNY+KD + FW L +S V G+ +FV VQ+
Sbjct: 309 KTEKLCTVRILNYRKDKSSFWNLLHISPV-RDATGKVAYFVGVQI 352
>gi|147765804|emb|CAN75623.1| hypothetical protein VITISV_039336 [Vitis vinifera]
Length = 439
Score = 307 bits (787), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 160/249 (64%), Positives = 191/249 (76%), Gaps = 10/249 (4%)
Query: 38 ISGHPIVF---ASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94
I G+PI + FLKMSG+S+ E+IG+NGR FQGP T+RR+I EI+EAI+EER I+
Sbjct: 70 IRGYPITLLDHEAGEFLKMSGYSKEEVIGKNGRAFQGPGTSRRSITEIQEAIQEERTIQT 129
Query: 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSEDG---G 151
LLNY+KDGTP WMLF MS VF KEDGR HFVAVQVP+ SRK R SG DG
Sbjct: 130 ILLNYRKDGTPIWMLFHMSPVFSKEDGRVIHFVAVQVPM-SRKP-RXSGSGPGRDGVCED 187
Query: 152 GSRLREIVFGSCRREVCSDSLLDLDRVLALDS--DDTGLEIEDSCEASDLEKRKAATAID 209
G R R+IVFGSCRREVCSDS+L+L+ VLA +S D + E+ EASD EKR+AA A++
Sbjct: 188 GCRSRDIVFGSCRREVCSDSVLELEHVLAFESLFDSDNRDDEEPREASDQEKRRAAAAVN 247
Query: 210 NILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYA 269
NILS+LTHYS+LTG+LVC KRC L G+G + +SL ISLGRIKQSFVL DPHLP+MP+ YA
Sbjct: 248 NILSLLTHYSELTGKLVCEKRCXLSGIGLLGASLIISLGRIKQSFVLTDPHLPEMPIAYA 307
Query: 270 SDAFLKLTG 278
SDAFLKLTG
Sbjct: 308 SDAFLKLTG 316
>gi|218187650|gb|EEC70077.1| hypothetical protein OsI_00692 [Oryza sativa Indica Group]
Length = 395
Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 145/309 (46%), Positives = 196/309 (63%), Gaps = 17/309 (5%)
Query: 8 IEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGR 67
+ S RY+ WV EALDELP SF +TDP++ GHPIV+ASRG ++G+ E++GRN R
Sbjct: 11 LAASLTARYSDWVVEALDELPGSFILTDPAMPGHPIVYASRGLASLTGYPPREVLGRNAR 70
Query: 68 MFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFV 127
+FQG T+R + +REA+R +RP +V++LNY++DG W+L ++ VF DGR HF+
Sbjct: 71 LFQGADTDRAAVAGVREAVRGQRPHQVSILNYRRDGEAHWVLLHLAPVFHASDGRVLHFL 130
Query: 128 AVQVPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREV-------CSDSLLDLDRVLA 180
AVQVPI R + + +VF +CR E C+ ++
Sbjct: 131 AVQVPIAPPASRRRTPPCRAARP------PVVFAACREEARVEEECPCASHAGEV----F 180
Query: 181 LDSDDTGLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFIS 240
+D D G + E+ AS+ EK KA + ++I S L YS+LTG +VCGKRC G+ +S
Sbjct: 181 VDVDKRGQDAEEPRVASEHEKEKALSTANSIFSALNRYSKLTGLVVCGKRCDSVGIPALS 240
Query: 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTT 300
SSL +SLGRIKQSFVL DPHLPDMP++YASDAFL LTGY R E++G NCRFLNG T
Sbjct: 241 SSLNLSLGRIKQSFVLTDPHLPDMPIIYASDAFLSLTGYSREEILGCNCRFLNGPGTSVE 300
Query: 301 VLYQVSIAI 309
VL Q++ I
Sbjct: 301 VLEQINQHI 309
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 53/87 (60%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88
SF +TDP + PI++AS FL ++G+SR EI+G N R GP T+ + +I + I
Sbjct: 252 QSFVLTDPHLPDMPIIYASDAFLSLTGYSREEILGCNCRFLNGPGTSVEVLEQINQHICS 311
Query: 89 ERPIEVNLLNYKKDGTPFWMLFKMSLV 115
E+ V+LLNY+K G+ F L +S +
Sbjct: 312 EQACTVHLLNYRKGGSSFRDLLHISPI 338
>gi|115434972|ref|NP_001042244.1| Os01g0186200 [Oryza sativa Japonica Group]
gi|55295935|dbj|BAD67803.1| putative PHY3 protein [Oryza sativa Japonica Group]
gi|113531775|dbj|BAF04158.1| Os01g0186200 [Oryza sativa Japonica Group]
gi|215766597|dbj|BAG98701.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222617882|gb|EEE54014.1| hypothetical protein OsJ_00672 [Oryza sativa Japonica Group]
Length = 395
Score = 274 bits (701), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 145/309 (46%), Positives = 196/309 (63%), Gaps = 17/309 (5%)
Query: 8 IEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGR 67
+ S RY+ WV EALDELP SF +TDP++ GHPIV+ASRG ++G+ E++GRN R
Sbjct: 11 LAASLTARYSDWVVEALDELPGSFILTDPAMPGHPIVYASRGLASLTGYPPREVLGRNAR 70
Query: 68 MFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFV 127
+FQG T+R + +REA+R +RP +V++LNY++DG W+L ++ VF DGR HF+
Sbjct: 71 LFQGADTDRAAVAGVREAVRGQRPHQVSILNYRRDGEAHWVLLHLAPVFHASDGRVLHFL 130
Query: 128 AVQVPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREV-------CSDSLLDLDRVLA 180
AVQVPI R + + +VF +CR E C+ ++
Sbjct: 131 AVQVPIAPPASRRRTPPCRAARPF------VVFAACREEARVEEECPCASHAGEV----F 180
Query: 181 LDSDDTGLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFIS 240
+D D G + E+ AS+ EK KA + ++I S L YS+LTG +VCGKRC G+ +S
Sbjct: 181 VDVDKRGQDAEEPRVASEHEKEKALSTANSIFSALNRYSKLTGLVVCGKRCDSVGIPALS 240
Query: 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTT 300
SSL +SLGRIKQSFVL DPHLPDMP++YASDAFL LTGY R E++G NCRFLNG T
Sbjct: 241 SSLNLSLGRIKQSFVLTDPHLPDMPIIYASDAFLSLTGYSREEILGCNCRFLNGPGTSVE 300
Query: 301 VLYQVSIAI 309
VL Q++ I
Sbjct: 301 VLEQINQHI 309
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 53/87 (60%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88
SF +TDP + PI++AS FL ++G+SR EI+G N R GP T+ + +I + I
Sbjct: 252 QSFVLTDPHLPDMPIIYASDAFLSLTGYSREEILGCNCRFLNGPGTSVEVLEQINQHICS 311
Query: 89 ERPIEVNLLNYKKDGTPFWMLFKMSLV 115
E+ V+LLNY+K G+ F L +S +
Sbjct: 312 EQACTVHLLNYRKGGSSFRDLLHISPI 338
>gi|356514312|ref|XP_003525850.1| PREDICTED: LOW QUALITY PROTEIN: protein TWIN LOV 1-like [Glycine
max]
Length = 270
Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 137/261 (52%), Positives = 177/261 (67%), Gaps = 18/261 (6%)
Query: 24 LDELP-DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
+ LP +SFTITDPSI GHPIVFA+ FLK++G+S E++G +F GP T+++ +++I
Sbjct: 1 MSSLPSNSFTITDPSIPGHPIVFANPSFLKLTGYSLREVLGWPAAIFSGPLTSQKFVIKI 60
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
E +REER V LLNY +DG PFWMLF +S +F + G HF+ VQVP+ ++
Sbjct: 61 HEIVREERNAXVILLNYHRDGMPFWMLFCVSPIFSSDGGAVVHFIVVQVPLQKKEX---- 116
Query: 143 GMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDS----DDTGLEIEDSCEASD 198
GS +R+ FG R+EVC DSL + DR+ +L+ D LE E+SCEASD
Sbjct: 117 ---------GSGVRDFGFGCYRKEVCVDSLAEXDRICSLEQLLEPDVRELEREESCEASD 167
Query: 199 LEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLID 258
EKR TA+D I SVLTHY + TGRLVC KR S+P +G +S+SL ISLGRIKQSFVL +
Sbjct: 168 DEKRSVVTAMDCIFSVLTHYGEATGRLVCRKRSSIPDVGLLSTSLIISLGRIKQSFVLTN 227
Query: 259 PHLPDMPMVYASDAFLKLTGY 279
PHLPDMP VYASD L LTG+
Sbjct: 228 PHLPDMPTVYASDTLLNLTGF 248
Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%)
Query: 252 QSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISP 311
SF + DP +P P+V+A+ +FLKLTGY EV+G +G T + ++ +
Sbjct: 7 NSFTITDPSIPGHPIVFANPSFLKLTGYSLREVLGWPAAIFSGPLTSQKFVIKIHEIVRE 66
Query: 312 YPKKKSIYMEYVR 324
I + Y R
Sbjct: 67 ERNAXVILLNYHR 79
>gi|357125813|ref|XP_003564584.1| PREDICTED: protein TWIN LOV 1-like [Brachypodium distachyon]
Length = 396
Score = 257 bits (656), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 142/303 (46%), Positives = 190/303 (62%), Gaps = 13/303 (4%)
Query: 7 LIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNG 66
L+ S RY+ WV E LDELP SF +TDP++SGHPIV+ASRG ++G+ +++GRN
Sbjct: 15 LLAASLTARYSDWVLEELDELPGSFLLTDPAMSGHPIVYASRGLASLTGYRPRDVLGRNA 74
Query: 67 RMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHF 126
R+FQG T+R + +R+A+R +R +V +LNY++DG P W+L ++ VF DGR HF
Sbjct: 75 RLFQGAATDRAAVAGVRDAVRCQRAHQVAILNYRRDGAPHWVLLHVAPVFHAHDGRVLHF 134
Query: 127 VAVQVPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLA---LDS 183
+AVQVPI + R + VF +CR E + L +D
Sbjct: 135 LAVQVPIAAAPRRRAAPCRRPP----------VFAACREEARVEEELPCASHAGEAFVDI 184
Query: 184 DDTGLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSL 243
D GLE + AS +K KA + ++I S L YS+LTG +VCGKRC G+ +SSSL
Sbjct: 185 DKRGLEAGEPRVASGCDKEKALSTANSIFSALNRYSKLTGLVVCGKRCDSAGIPALSSSL 244
Query: 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLY 303
+SLGRIKQSFVL D HLPDMP+VYASDAFL LTGY R E++G NCRFLNG T VL
Sbjct: 245 NLSLGRIKQSFVLTDRHLPDMPVVYASDAFLSLTGYSREEILGCNCRFLNGPGTSLEVLE 304
Query: 304 QVS 306
+++
Sbjct: 305 EIN 307
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 51/87 (58%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
+ SF +TD + P+V+AS FL ++G+SR EI+G N R GP T+ + EI I
Sbjct: 251 IKQSFVLTDRHLPDMPVVYASDAFLSLTGYSREEILGCNCRFLNGPGTSLEVLEEINRNI 310
Query: 87 REERPIEVNLLNYKKDGTPFWMLFKMS 113
E+ V+LLNY+KDG F L +S
Sbjct: 311 CCEQACTVHLLNYRKDGLAFPDLLHVS 337
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 37/78 (47%)
Query: 247 LGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVS 306
L + SF+L DP + P+VYAS LTGY +V+G+N R G TD + V
Sbjct: 32 LDELPGSFLLTDPAMSGHPIVYASRGLASLTGYRPRDVLGRNARLFQGAATDRAAVAGVR 91
Query: 307 IAISPYPKKKSIYMEYVR 324
A+ + + Y R
Sbjct: 92 DAVRCQRAHQVAILNYRR 109
>gi|414875958|tpg|DAA53089.1| TPA: hypothetical protein ZEAMMB73_525936 [Zea mays]
Length = 317
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 135/301 (44%), Positives = 182/301 (60%), Gaps = 15/301 (4%)
Query: 10 QSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMF 69
S RY+ WV E LDELP SF +TDP++ GHPIV+ASRG ++G++ +++GRN R+F
Sbjct: 22 SSLTARYSDWVLETLDELPGSFLLTDPALPGHPIVYASRGLAALTGYAPRDVLGRNARLF 81
Query: 70 QGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAV 129
QG T+R T+ +REA+R RP + +LNY++DG P W+L ++ +F DG HF+AV
Sbjct: 82 QGAATDRATVAGVREAVRAHRPHQAAILNYRRDGAPHWVLLHLAPLFHARDGTLLHFLAV 141
Query: 130 QVPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRRE---VCSD--SLLDLDRVLALDSD 184
QVPI R G + +CR E V D +V +D D
Sbjct: 142 QVPIAPAAVAR---------GATCHTTGHLLAACRDEASRVAEDFPCATHAGKVF-VDMD 191
Query: 185 DTGLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLY 244
GLE E+ SD EK A + ++I+S L YS+LTG +V KRC G+ +SSSL
Sbjct: 192 KRGLETEEPRVPSDSEKDMAISTANSIVSALNSYSKLTGLVVSRKRCDSIGIPALSSSLK 251
Query: 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQ 304
+SLGRIKQSFVL D LP+MP++YASDAF LTGY R E++G NC+ LNG T VL +
Sbjct: 252 LSLGRIKQSFVLTDSRLPNMPIIYASDAFTSLTGYSREEILGCNCKVLNGPGTSLEVLEE 311
Query: 305 V 305
V
Sbjct: 312 V 312
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
+L + SF+L DP LP P+VYAS LTGY +V+G+N R G TD + V
Sbjct: 35 TLDELPGSFLLTDPALPGHPIVYASRGLAALTGYAPRDVLGRNARLFQGAATDRATVAGV 94
Query: 306 SIAISPYPKKKSIYMEYVR 324
A+ + ++ + Y R
Sbjct: 95 REAVRAHRPHQAAILNYRR 113
>gi|194703998|gb|ACF86083.1| unknown [Zea mays]
gi|414875957|tpg|DAA53088.1| TPA: hypothetical protein ZEAMMB73_525936 [Zea mays]
Length = 402
Score = 243 bits (621), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 134/301 (44%), Positives = 183/301 (60%), Gaps = 15/301 (4%)
Query: 11 SFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQ 70
S RY+ WV E LDELP SF +TDP++ GHPIV+ASRG ++G++ +++GRN R+FQ
Sbjct: 23 SLTARYSDWVLETLDELPGSFLLTDPALPGHPIVYASRGLAALTGYAPRDVLGRNARLFQ 82
Query: 71 GPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
G T+R T+ +REA+R RP + +LNY++DG P W+L ++ +F DG HF+AVQ
Sbjct: 83 GAATDRATVAGVREAVRAHRPHQAAILNYRRDGAPHWVLLHLAPLFHARDGTLLHFLAVQ 142
Query: 131 VPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRRE---VCSD--SLLDLDRVLALDSDD 185
VPI R G + +CR E V D +V +D D
Sbjct: 143 VPIAPAAVAR---------GATCHTTGHLLAACRDEASRVAEDFPCATHAGKVF-VDMDK 192
Query: 186 TGLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYI 245
GLE E+ SD EK A + ++I+S L YS+LTG +V KRC G+ +SSSL +
Sbjct: 193 RGLETEEPRVPSDSEKDMAISTANSIVSALNSYSKLTGLVVSRKRCDSIGIPALSSSLKL 252
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
SLGRIKQSFVL D LP+MP++YASDAF LTGY R E++G NC+ LNG T VL ++
Sbjct: 253 SLGRIKQSFVLTDSRLPNMPIIYASDAFTSLTGYSREEILGCNCKVLNGPGTSLEVLEEI 312
Query: 306 S 306
+
Sbjct: 313 N 313
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 49/77 (63%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
SF +TD + PI++AS F ++G+SR EI+G N ++ GP T+ + EI + I E
Sbjct: 260 SFVLTDSRLPNMPIIYASDAFTSLTGYSREEILGCNCKVLNGPGTSLEVLEEINQHICSE 319
Query: 90 RPIEVNLLNYKKDGTPF 106
+ V+LL+Y+KDG+ F
Sbjct: 320 QACTVDLLSYRKDGSSF 336
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
+L + SF+L DP LP P+VYAS LTGY +V+G+N R G TD + V
Sbjct: 35 TLDELPGSFLLTDPALPGHPIVYASRGLAALTGYAPRDVLGRNARLFQGAATDRATVAGV 94
Query: 306 SIAISPYPKKKSIYMEYVR 324
A+ + ++ + Y R
Sbjct: 95 REAVRAHRPHQAAILNYRR 113
>gi|356561078|ref|XP_003548812.1| PREDICTED: LOW QUALITY PROTEIN: protein TWIN LOV 1-like [Glycine
max]
Length = 254
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 132/275 (48%), Positives = 172/275 (62%), Gaps = 41/275 (14%)
Query: 8 IEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGR 67
I++SF+ RYT + LDELPDSFT+TDPSI GHPIVFAS GFLK++G+S E++GR
Sbjct: 14 IQRSFDARYTRHTRDLLDELPDSFTVTDPSILGHPIVFASPGFLKLTGYSLREVLGRPTA 73
Query: 68 MFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFV 127
+FQGP T ++++EIR+ +REER +V L HFV
Sbjct: 74 IFQGPLTFPKSVIEIRKVVREERNAQVIL-----------------------PKSVVHFV 110
Query: 128 AVQVPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDS---- 183
AV VP+ ++ GS +R+ F C +EVC DSL + D V +L+
Sbjct: 111 AVXVPLQKKE--------------GSGVRDFGFECCXKEVCVDSLAEXDCVCSLEQVPEP 156
Query: 184 DDTGLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSL 243
D +E E+ CEASD EK TA+D+I VLTHYS+ TGRLVC KR ++P +G +S+SL
Sbjct: 157 DVREVEREELCEASDDEKXSVVTAMDSIFYVLTHYSEATGRLVCRKRSNIPDVGLLSTSL 216
Query: 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG 278
ISLGRIKQSFVL + HLPDMP+VYASD FL+LT
Sbjct: 217 IISLGRIKQSFVLTNLHLPDMPIVYASDTFLELTN 251
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%)
Query: 247 LGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG 294
L + SF + DP + P+V+AS FLKLTGY EV+G+ G
Sbjct: 30 LDELPDSFTVTDPSILGHPIVFASPGFLKLTGYSLREVLGRPTAIFQG 77
>gi|168060156|ref|XP_001782064.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666475|gb|EDQ53128.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 327
Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 128/309 (41%), Positives = 179/309 (57%), Gaps = 22/309 (7%)
Query: 11 SFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQ 70
S + Y V +AL + +F ++DP + HPIVFAS GFL+MS + R E++GRN R Q
Sbjct: 6 SLSRAYNEKVGQALGQHEYNFVLSDPRLPDHPIVFASEGFLRMSRYERDEVVGRNCRFLQ 65
Query: 71 GPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
GP T+RRT++EIR+AIREER +V +LNY K PFW LF M+ +F DG+ H+V VQ
Sbjct: 66 GPDTDRRTVVEIRDAIREERACQVLILNYTKYKEPFWNLFHMAPIFSS-DGQVIHYVGVQ 124
Query: 131 VPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEI 190
PI ++D L + + + D+ R+ +D T +E
Sbjct: 125 TPI-------------ADDLASQALLSELPAMNDSFLSAKEYTDVARLTLIDC-ATDVED 170
Query: 191 EDSC-EASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSL---PGMGFISSSLYIS 246
EDS ++ +KA A++ + S LT S++ G L +R L G +SSSL +S
Sbjct: 171 EDSLFPVNEGVNQKATLAVEKVTSELTQLSRVKGALEKNRRVGLSESAAKGVVSSSLMLS 230
Query: 247 LGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVS 306
L RI+QS +L DP+LPD P+V+ASD F +LTGY R EVVG+NCRFL G DTD + ++
Sbjct: 231 LTRIQQSLILSDPNLPDTPIVHASDVFCELTGYSREEVVGRNCRFLQGPDTDPEAVREIR 290
Query: 307 IAIS---PY 312
AI PY
Sbjct: 291 EAIKAERPY 299
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 66/104 (63%)
Query: 4 QLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIG 63
++GL E + + + +L + S ++DP++ PIV AS F +++G+SR E++G
Sbjct: 211 RVGLSESAAKGVVSSSLMLSLTRIQQSLILSDPNLPDTPIVHASDVFCELTGYSREEVVG 270
Query: 64 RNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFW 107
RN R QGP T+ + EIREAI+ ERP V +LNYKKD TPFW
Sbjct: 271 RNCRFLQGPDTDPEAVREIREAIKAERPYTVRILNYKKDNTPFW 314
>gi|311692312|dbj|BAJ24887.1| LOV/LOV protein 1 [Physcomitrella patens]
Length = 435
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 133/321 (41%), Positives = 181/321 (56%), Gaps = 35/321 (10%)
Query: 11 SFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQ 70
S + Y V +AL + +F ++DP + HPIVFAS GFL+MS + R E++GRN R Q
Sbjct: 47 SLSRAYNEKVGQALGQHEYNFVLSDPRLPDHPIVFASEGFLRMSRYERDEVVGRNCRFLQ 106
Query: 71 GPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
GP T+RRT++EIR+AIREER +V +LNY K PFW LF M+ +F DG+ H+V VQ
Sbjct: 107 GPDTDRRTVVEIRDAIREERACQVLILNYTKYKEPFWNLFHMAPIFSS-DGQVIHYVGVQ 165
Query: 131 VPIVSR----------KHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLA 180
PI M +S +S E +RL SC E D+L
Sbjct: 166 TPIADDLASQALLSELPAMNDSFLSAKEYTDVARL-----DSC--ESTHDNL-------- 210
Query: 181 LDSDDTGLEIEDS---CEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSL---P 234
S G ++ED ++ +KA A++ + S LT S++ G L +R L
Sbjct: 211 SKSSSRGRDVEDEDSLFPVNEGVNQKATLAVEKVTSELTQLSRVKGALEKNRRVGLSESA 270
Query: 235 GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG 294
G +SSSL +SL RI+QS +L DP+LPD P+V+ASD F +LTGY R EVVG+NCRFL G
Sbjct: 271 AKGVVSSSLMLSLTRIQQSLILSDPNLPDTPIVHASDVFCELTGYSREEVVGRNCRFLQG 330
Query: 295 VDTDTTVLYQVSIAIS---PY 312
DTD + ++ AI PY
Sbjct: 331 PDTDPEAVREIREAIKAERPY 351
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 83/146 (56%), Gaps = 8/146 (5%)
Query: 2 DSQLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEI 61
+ ++GL E + + + +L + S ++DP++ PIV AS F +++G+SR E+
Sbjct: 261 NRRVGLSESAAKGVVSSSLMLSLTRIQQSLILSDPNLPDTPIVHASDVFCELTGYSREEV 320
Query: 62 IGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDG 121
+GRN R QGP T+ + EIREAI+ ERP V +LNYKKD TPFW ++ V G
Sbjct: 321 VGRNCRFLQGPDTDPEAVREIREAIKAERPYTVRILNYKKDNTPFWNHLHVAPVRSATGG 380
Query: 122 RATHFVAVQ-------VPIVSRKHMR 140
A +FV VQ VP+V +R
Sbjct: 381 VA-YFVGVQLNVSEADVPVVQGASLR 405
>gi|302790163|ref|XP_002976849.1| hypothetical protein SELMODRAFT_443359 [Selaginella moellendorffii]
gi|300155327|gb|EFJ21959.1| hypothetical protein SELMODRAFT_443359 [Selaginella moellendorffii]
Length = 394
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 125/321 (38%), Positives = 177/321 (55%), Gaps = 45/321 (14%)
Query: 1 MDSQLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAE 60
M + ++ QS Y + + L + +F + DP + HPIV+AS GFL+M+G+SR E
Sbjct: 21 MKNHKLIVSQSLIRSYRASIQDELQKHAYNFVLCDPGLPDHPIVYASDGFLEMTGYSRDE 80
Query: 61 IIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED 120
++GRN R QG T++R I+EIREAIREER ++ +LNY K G PFW LF ++ VF ++D
Sbjct: 81 VLGRNCRFLQGRDTDKRAIVEIREAIREERDCQIKILNYTKAGKPFWNLFHLAPVFSQQD 140
Query: 121 GRATHFVAVQVPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLA 180
GR HFV VQ+PI S+ R G L L+ L+
Sbjct: 141 GRVVHFVGVQLPISSKVAARKDG---------------------------HLTGLE--LS 171
Query: 181 LDSDDTGLEIED-----SCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCS--- 232
D LE E+ SC+ L + A + +VL + + + V R
Sbjct: 172 FDE----LEFEEHFDNPSCKNYHLSEEDKQRAFAAVKAVLQELANSSCKGVSSMRSKSFS 227
Query: 233 ---LPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNC 289
+P GF+++SL ++L RI SFVL DPHLPDMP+V+AS FL+LTGY R EV+G+NC
Sbjct: 228 EGVIPP-GFVATSLLLALTRIPHSFVLTDPHLPDMPIVHASLEFLELTGYTREEVIGRNC 286
Query: 290 RFLNGVDTDTTVLYQVSIAIS 310
RFL G DTD + ++ +IS
Sbjct: 287 RFLQGPDTDLAPIEELRSSIS 307
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 77/136 (56%), Gaps = 10/136 (7%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL +P SF +TDP + PIV AS FL+++G++R E+IGRN R QGP T+ I E+
Sbjct: 243 ALTRIPHSFVLTDPHLPDMPIVHASLEFLELTGYTREEVIGRNCRFLQGPDTDLAPIEEL 302
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R +I E + + +LNY+K+ PFW +S V G+ ++ +QV +
Sbjct: 303 RSSISEGQTCTIRILNYRKNKEPFWNSLHISPV-RNSSGKVAYYAGIQVAV--------- 352
Query: 143 GMSYSEDGGGSRLREI 158
S ED G +R++++
Sbjct: 353 SHSSEEDEGRARMQQL 368
>gi|302797635|ref|XP_002980578.1| hypothetical protein SELMODRAFT_112753 [Selaginella moellendorffii]
gi|300151584|gb|EFJ18229.1| hypothetical protein SELMODRAFT_112753 [Selaginella moellendorffii]
Length = 374
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 125/321 (38%), Positives = 177/321 (55%), Gaps = 45/321 (14%)
Query: 1 MDSQLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAE 60
M + ++ QS Y + + L + +F + DP + HPIV+AS GFL+M+G+SR E
Sbjct: 1 MKNHKLIVSQSLIRSYRASIQDELQKHAYNFVLCDPGLPDHPIVYASDGFLEMTGYSRDE 60
Query: 61 IIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED 120
++GRN R QG T++R I+EIREAIREER ++ +LNY K G PFW LF ++ VF ++D
Sbjct: 61 VLGRNCRFLQGRDTDKRAIVEIREAIREERDCQIKILNYTKAGKPFWNLFHLAPVFSQQD 120
Query: 121 GRATHFVAVQVPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLA 180
GR HFV VQ+PI S+ R G L L+ L+
Sbjct: 121 GRVVHFVGVQLPISSKLAARKDG---------------------------HLTGLE--LS 151
Query: 181 LDSDDTGLEIED-----SCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCS--- 232
D LE E+ SC+ L + A + +VL + + + V R
Sbjct: 152 FDE----LEFEEHFDNPSCKNYHLSEEDKQRAFAAVKAVLQELANSSCKGVSSMRSKSFS 207
Query: 233 ---LPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNC 289
+P GF+++SL ++L RI SFVL DPHLPDMP+V+AS FL+LTGY R EV+G+NC
Sbjct: 208 EGVIPP-GFVATSLLLALTRIPHSFVLTDPHLPDMPIVHASLEFLELTGYTREEVIGRNC 266
Query: 290 RFLNGVDTDTTVLYQVSIAIS 310
RFL G DTD + ++ +IS
Sbjct: 267 RFLQGPDTDLAPIEELRSSIS 287
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 77/136 (56%), Gaps = 10/136 (7%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL +P SF +TDP + PIV AS FL+++G++R E+IGRN R QGP T+ I E+
Sbjct: 223 ALTRIPHSFVLTDPHLPDMPIVHASLEFLELTGYTREEVIGRNCRFLQGPDTDLAPIEEL 282
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R +I E + V +LNY+K+ PFW +S V G+ ++ +QV +
Sbjct: 283 RSSISEGQTCTVRILNYRKNKEPFWNSLHISPV-RNSSGKVAYYAGIQVAV--------- 332
Query: 143 GMSYSEDGGGSRLREI 158
S ED G +R++++
Sbjct: 333 SHSSEEDEGRARMQQL 348
>gi|168047069|ref|XP_001775994.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672652|gb|EDQ59186.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 406
Score = 213 bits (543), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 133/306 (43%), Positives = 176/306 (57%), Gaps = 24/306 (7%)
Query: 11 SFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQ 70
S + Y + + L + +F ++DP + HPIVFAS GFL+MSG+ R E++GRN R Q
Sbjct: 29 SLSRAYNEKIGQVLQQHEYNFVLSDPRLPDHPIVFASEGFLRMSGYDREEVLGRNCRFLQ 88
Query: 71 GPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
GP T+R T++EIR+AIREER +V +LNY K G PFW LF M+ +F DGR H+V VQ
Sbjct: 89 GPDTDRGTVVEIRDAIREERACQVRILNYTKQGEPFWNLFHMAPIFSN-DGRVIHYVGVQ 147
Query: 131 VPIVSRKHMRNSGMSY---SEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTG 187
PI K + + ++ +EDG E S DL R +L S D
Sbjct: 148 TPIA--KDLLSEAVTAALPAEDGSSVPAEE-------------SAADL-RGDSLHSPDES 191
Query: 188 LEIEDSCE-ASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSL---PGMGFISSSL 243
E E +D K KAA A+ + LT S++ G L +R L G +SSSL
Sbjct: 192 SEDEAMPSFVNDDVKEKAAVAVQTVTGELTRSSRVKGALEQNRRIGLSECAAKGVVSSSL 251
Query: 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLY 303
+SL RI+QS VL DP LPD P+V+ASD F +LTGY R EVVG+NCRFL G DTD +
Sbjct: 252 LLSLTRIQQSLVLADPSLPDTPIVHASDVFCELTGYSREEVVGRNCRFLQGPDTDPESVR 311
Query: 304 QVSIAI 309
++ AI
Sbjct: 312 EIREAI 317
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 67/104 (64%), Gaps = 1/104 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
S + DPS+ PIV AS F +++G+SR E++GRN R QGP T+ ++ EIREAI+ E
Sbjct: 261 SLVLADPSLPDTPIVHASDVFCELTGYSREEVVGRNCRFLQGPDTDPESVREIREAIQAE 320
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
RP V +LNY+KD TPFW ++ V G+ +FV VQ+ +
Sbjct: 321 RPCTVRILNYRKDDTPFWNHLHVAPVRSAT-GKVAYFVGVQLDV 363
>gi|311692314|dbj|BAJ24888.1| LOV/LOV protein 2 [Physcomitrella patens]
Length = 437
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 133/313 (42%), Positives = 177/313 (56%), Gaps = 23/313 (7%)
Query: 11 SFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQ 70
S + Y + + L + +F ++DP + HPIVFAS GFL+MSG+ R E++GRN R Q
Sbjct: 45 SLSRAYNEKIGQVLQQHEYNFVLSDPRLPDHPIVFASEGFLRMSGYDREEVLGRNCRFLQ 104
Query: 71 GPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
GP T+R T++EIR+AIREER +V +LNY K G PFW LF M+ +F DGR H+V VQ
Sbjct: 105 GPDTDRGTVVEIRDAIREERACQVRILNYTKQGEPFWNLFHMAPIFSN-DGRVIHYVGVQ 163
Query: 131 VPIVSRKHMRNSGMSY---SEDGGGSRLREIVFGSCRREVCSDSLLDLD--------RVL 179
PI K + + ++ +EDG E ++ DSL D R
Sbjct: 164 TPIA--KDLLSEAVTAALPAEDGSSVPAEESAA-----DLRGDSLHSPDESSVNMRLRGG 216
Query: 180 ALDSDDTGLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSL---PGM 236
A D E S D+ K KAA A+ + LT S++ G L +R L
Sbjct: 217 ATSHADEEDEAMPSFVNDDV-KEKAAVAVQTVTGELTRSSRVKGALEQNRRIGLSECAAK 275
Query: 237 GFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296
G +SSSL +SL RI+QS VL DP LPD P+V+ASD F +LTGY R EVVG+NCRFL G D
Sbjct: 276 GVVSSSLLLSLTRIQQSLVLADPSLPDTPIVHASDVFCELTGYSREEVVGRNCRFLQGPD 335
Query: 297 TDTTVLYQVSIAI 309
TD + ++ AI
Sbjct: 336 TDPESVREIREAI 348
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 67/104 (64%), Gaps = 1/104 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
S + DPS+ PIV AS F +++G+SR E++GRN R QGP T+ ++ EIREAI+ E
Sbjct: 292 SLVLADPSLPDTPIVHASDVFCELTGYSREEVVGRNCRFLQGPDTDPESVREIREAIQAE 351
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
RP V +LNY+KD TPFW ++ V G+ +FV VQ+ +
Sbjct: 352 RPCTVRILNYRKDDTPFWNHLHVAPVRSAT-GKVAYFVGVQLDV 394
>gi|148907121|gb|ABR16704.1| unknown [Picea sitchensis]
Length = 272
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 108/241 (44%), Positives = 147/241 (60%), Gaps = 19/241 (7%)
Query: 1 MDSQLG---LIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFS 57
M +QL LIE+S N RY+ + EAL ++ +F ITDP + HPIV+AS+GFLKMSG+S
Sbjct: 12 MCTQLNSRQLIEESLNIRYSDGIREALGQVHFNFVITDPCLLDHPIVYASQGFLKMSGYS 71
Query: 58 RAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFG 117
E++GRN R QGP T+RRT++ IREAIREE+ +V++LNYKK+GT FW LF ++ VF
Sbjct: 72 TEEVVGRNVRFLQGPDTDRRTVLTIREAIREEKSCQVSILNYKKNGTAFWNLFHLAPVFS 131
Query: 118 KEDGRATHFVAVQVPI----------VSRKHMRNSGMSYSEDG--GGSRLREIVFGSCRR 165
+ DGR HFV VQ PI N+ ++ E+ I FGSCRR
Sbjct: 132 EGDGRVIHFVGVQTPISKFSRSSVSNNVSCSRPNNCPAFVENMLFNHHTSSAIYFGSCRR 191
Query: 166 EVCSDSLLDLDRVLALDS----DDTGLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQL 221
E+ S+ +DL +S D+ GLE E +CEA + +K+KA A IL LT +S+
Sbjct: 192 ELFSNFSVDLGHSGLYNSLAEEDNAGLEEEPTCEAKESDKQKAIAAATRILFELTQFSKH 251
Query: 222 T 222
T
Sbjct: 252 T 252
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 43/64 (67%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
+LG++ +FV+ DP L D P+VYAS FLK++GY EVVG+N RFL G DTD + +
Sbjct: 37 ALGQVHFNFVITDPCLLDHPIVYASQGFLKMSGYSTEEVVGRNVRFLQGPDTDRRTVLTI 96
Query: 306 SIAI 309
AI
Sbjct: 97 REAI 100
>gi|414875956|tpg|DAA53087.1| TPA: hypothetical protein ZEAMMB73_525936 [Zea mays]
Length = 274
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 92/227 (40%), Positives = 129/227 (56%), Gaps = 15/227 (6%)
Query: 10 QSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMF 69
S RY+ WV E LDELP SF +TDP++ GHPIV+ASRG ++G++ +++GRN R+F
Sbjct: 22 SSLTARYSDWVLETLDELPGSFLLTDPALPGHPIVYASRGLAALTGYAPRDVLGRNARLF 81
Query: 70 QGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAV 129
QG T+R T+ +REA+R RP + +LNY++DG P W+L ++ +F DG HF+AV
Sbjct: 82 QGAATDRATVAGVREAVRAHRPHQAAILNYRRDGAPHWVLLHLAPLFHARDGTLLHFLAV 141
Query: 130 QVPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRRE---VCSD--SLLDLDRVLALDSD 184
QVPI R G + +CR E V D +V +D D
Sbjct: 142 QVPIAPAAVAR---------GATCHTTGHLLAACRDEASRVAEDFPCATHAGKVF-VDMD 191
Query: 185 DTGLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRC 231
GLE E+ SD EK A + ++I+S L YS+LTG +V KRC
Sbjct: 192 KRGLETEEPRVPSDSEKDMAISTANSIVSALNSYSKLTGLVVSRKRC 238
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
+L + SF+L DP LP P+VYAS LTGY +V+G+N R G TD + V
Sbjct: 35 TLDELPGSFLLTDPALPGHPIVYASRGLAALTGYAPRDVLGRNARLFQGAATDRATVAGV 94
Query: 306 SIAISPYPKKKSIYMEYVR 324
A+ + ++ + Y R
Sbjct: 95 REAVRAHRPHQAAILNYRR 113
>gi|356560715|ref|XP_003548634.1| PREDICTED: LOW QUALITY PROTEIN: protein TWIN LOV 1-like [Glycine
max]
Length = 232
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/180 (53%), Positives = 121/180 (67%), Gaps = 18/180 (10%)
Query: 104 TPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSC 163
TPFWMLF++S VF + G HFV VQVP+ ++ GS +R+ FG C
Sbjct: 15 TPFWMLFRVSPVFSSDGGAVVHFVVVQVPLQKKE--------------GSEVRDFGFGCC 60
Query: 164 RREVCSDSLLDLDRVLALDS----DDTGLEIEDSCEASDLEKRKAATAIDNILSVLTHYS 219
R+EVC DSL++ D + +L+ D +E + CEASD EKR TA+D I SVLTHYS
Sbjct: 61 RKEVCVDSLVEXDHICSLEQLLEHDVREVERXEPCEASDDEKRSVVTAMDCIFSVLTHYS 120
Query: 220 QLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGY 279
+ T RLVC KR S+P +G +S+SL ISLGRIKQSFVL +PHLPDM +VYASDAFL LTG+
Sbjct: 121 EATRRLVCRKRSSIPDVGLLSTSLIISLGRIKQSFVLTNPHLPDMAIVYASDAFLNLTGF 180
>gi|307103015|gb|EFN51280.1| hypothetical protein CHLNCDRAFT_141214 [Chlorella variabilis]
Length = 796
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 151/289 (52%), Gaps = 47/289 (16%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL +L +F + D ++ P+++AS GF+ M+G+S E++G N R QG T+ + + ++
Sbjct: 32 ALAQLRHTFVVADATLPDCPLIYASEGFVHMTGYSMEEVLGHNCRFLQGEGTDPKDVKKL 91
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R+A+R P+ LLNY+KDGTPFW L M+ + E GR FV VQV + + +
Sbjct: 92 RDAVRNGTPVCTRLLNYRKDGTPFWNLLTMTPI-KDEMGRVIKFVGVQVDVTN----KTE 146
Query: 143 GMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIEDSCEASDLEKR 202
G +Y++ G L + DD L++
Sbjct: 147 GRAYTDSAGVPML-------------------------VHYDDR------------LKET 169
Query: 203 KAATAIDNILSVLTHY-SQLTGRLVCGKRC-SLPGMGFISSSLYISLGRIKQSFVLIDPH 260
A +D++L+ + ++ RL G +LP + L ++ RI+ +FV+ DP
Sbjct: 170 VAKPIVDDVLTAVQEADGKVPVRLSRGSPSRALPRVAL---DLATTVERIQSNFVIADPT 226
Query: 261 LPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
LPD P+V+ASD FLKLTGY R EV+G+NCRFL G DTD + ++ AI
Sbjct: 227 LPDCPIVFASDPFLKLTGYRREEVLGRNCRFLQGRDTDRATVNELKAAI 275
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 70/119 (58%), Gaps = 1/119 (0%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R L + ++ + +F I DP++ PIVFAS FLK++G+ R E++GRN R QG T
Sbjct: 204 RVALDLATTVERIQSNFVIADPTLPDCPIVFASDPFLKLTGYRREEVLGRNCRFLQGRDT 263
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+R T+ E++ AIR R V +LNY K G PFW + ++ + E+ R V VQV +
Sbjct: 264 DRATVNELKAAIRAGRECTVRMLNYTKAGKPFWNMLTVAPIKDIEE-RPRFLVGVQVDV 321
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 41/60 (68%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+ + L +L +++ +FV+ D LPD P++YAS+ F+ +TGY EV+G NCRFL G TD
Sbjct: 25 VKAQLTSALAQLRHTFVVADATLPDCPLIYASEGFVHMTGYSMEEVLGHNCRFLQGEGTD 84
>gi|384250283|gb|EIE23763.1| putative blue light receptor [Coccomyxa subellipsoidea C-169]
Length = 803
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 104/316 (32%), Positives = 159/316 (50%), Gaps = 40/316 (12%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+ L L +F + D ++ P+VFAS GFL M+G+S E++G N R QG T+ + +
Sbjct: 37 KVLAGLRHTFVVADATLPDCPLVFASEGFLSMTGYSAEEVLGHNCRFLQGEGTDPKEVAI 96
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
IR+A+++ V LLNY++DGTPFW L M+ + EDG+ + FV VQV + S +
Sbjct: 97 IRDAVKKGEGCSVRLLNYRRDGTPFWNLLTMTPI-KTEDGKVSKFVGVQVDVTS----KT 151
Query: 142 SGMSYSEDGG-------GSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIEDS- 193
G ++S+ G +RLRE V + + D L +V + +D+G E +
Sbjct: 152 EGRAFSDATGVPLLVKYDTRLRENV----AKNIVQDVTL---QVQEAEEEDSGAASEAAR 204
Query: 194 ------------------CEASDLEKRKAATAIDNILSVLTHYSQL--TGRLVCGKRCSL 233
L +A D H QL G V K +
Sbjct: 205 VSSLKGFNKLWHKMGNKVTRPQCLGGPPSAPLGDPKAQASAHDPQLQKQGERVGKKMTAP 264
Query: 234 PGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLN 293
++ L ++ RI+Q+F + DP+LPD P+V+ASD FL+++ YDR EV+G+NCRFL
Sbjct: 265 KTFPRVAMDLATTVERIQQNFCICDPNLPDNPIVFASDGFLEMSQYDRFEVLGRNCRFLQ 324
Query: 294 GVDTDTTVLYQVSIAI 309
G DTD + + AI
Sbjct: 325 GPDTDPKAISIIRDAI 340
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 74/121 (61%), Gaps = 1/121 (0%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + ++ + +F I DP++ +PIVFAS GFL+MS + R E++GRN R QGP T
Sbjct: 269 RVAMDLATTVERIQQNFCICDPNLPDNPIVFASDGFLEMSQYDRFEVLGRNCRFLQGPDT 328
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
+ + I IR+AI+ + V +LNY+K G PFW + ++ + DG + F+ VQV +
Sbjct: 329 DPKAISIIRDAIKSQSEATVRILNYRKSGQPFWNMLTIAPM-ADVDGTSRFFIGVQVDVT 387
Query: 135 S 135
+
Sbjct: 388 A 388
>gi|303288491|ref|XP_003063534.1| phototropin, blue light receptor [Micromonas pusilla CCMP1545]
gi|226455366|gb|EEH52670.1| phototropin, blue light receptor [Micromonas pusilla CCMP1545]
Length = 819
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 106/290 (36%), Positives = 153/290 (52%), Gaps = 44/290 (15%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL + +FT++DP++ PIV+AS GFLKM+G+S E+I RN R QG T+R + +I
Sbjct: 39 ALASVRHTFTVSDPTLPDCPIVYASDGFLKMTGYSAEEVINRNCRFLQGEDTDRDDVQKI 98
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH---M 139
R+A+++ + + L NYKKDGTPFW L ++ V EDG F+ VQV + R
Sbjct: 99 RDAVQKGERLTIRLQNYKKDGTPFWNLLTIAPV-KMEDGTVAKFIGVQVDVTDRTEGEVG 157
Query: 140 RNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIEDSCEASDL 199
R G DGG V G+ + E L+ D+ L D + G+E D+
Sbjct: 158 RTVG-----DGG-------VVGA-KDEKGLPLLVRYDQRLK-DQNYPGVE--------DV 195
Query: 200 EKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDP 259
E KA + I + T S+ L + ++ RI+QSF++ DP
Sbjct: 196 E--KAVMKGEGIDADATRNSRAREGL----------------DMATTMERIQQSFLISDP 237
Query: 260 HLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
LPD P+V+ASD FL TGY R E++G+NCRFL G TD + ++ AI
Sbjct: 238 SLPDCPIVFASDGFLDFTGYGREEILGRNCRFLQGAGTDRDAVKEIRNAI 287
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 69/120 (57%), Gaps = 1/120 (0%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R L + ++ + SF I+DPS+ PIVFAS GFL +G+ R EI+GRN R QG T
Sbjct: 216 REGLDMATTMERIQQSFLISDPSLPDCPIVFASDGFLDFTGYGREEILGRNCRFLQGAGT 275
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
+R + EIR AI++ R V LLNY K G PFW +F ++ V G F VQV +
Sbjct: 276 DRDAVKEIRNAIKDNRECTVRLLNYTKQGKPFWNMFTLAPVR-DHAGEVRFFAGVQVDVT 334
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 47/71 (66%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S L ++L ++ +F + DP LPD P+VYASD FLK+TGY EV+ +NCRFL G DTD
Sbjct: 33 SKGLTMALASVRHTFTVSDPTLPDCPIVYASDGFLKMTGYSAEEVINRNCRFLQGEDTDR 92
Query: 300 TVLYQVSIAIS 310
+ ++ A+
Sbjct: 93 DDVQKIRDAVQ 103
>gi|60099458|dbj|BAD89968.1| phototropin [Phaseolus vulgaris]
Length = 996
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 112/355 (31%), Positives = 171/355 (48%), Gaps = 66/355 (18%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + EAL L +F ++D + PI++AS GF M+G+S EIIGRN R QGP T
Sbjct: 182 RVSQELKEALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEIIGRNCRFLQGPDT 241
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPI 133
++ + +IR+AIR R LLNYKK+GTPFW L ++ + K+D G F+ +QV +
Sbjct: 242 DKNEVDKIRDAIRNGRSYCGRLLNYKKNGTPFWNLLTVTPI--KDDKGNTIKFIGMQVEV 299
Query: 134 ------VSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTG 187
V+ K +R +G+ S +R +E GS V ++ D ++ +DDT
Sbjct: 300 SKYTEGVNEKALRPNGLPKSLIRYDARQKETAMGSITEVV--QTVKDPKSIINKRNDDTA 357
Query: 188 LEIED------------SCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPG 235
+ E+ S +A + + NI S+ ++ Q R R SL G
Sbjct: 358 SKQEEEEKMNLDFVLPKSADAGNTSTPGRQPSPLNIQSMSSN--QEKSRTSRSGRISLKG 415
Query: 236 MGFISSS-----------------------------------------LYISLGRIKQSF 254
S S L +L RI+++F
Sbjct: 416 FKGKSQSSAGRDEEKTIVEPEVLMTKEIEWSNNWEHSLRERDIRQGIDLATTLERIEKNF 475
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
V+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD + ++ AI
Sbjct: 476 VISDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQATVSRIRDAI 530
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 72/109 (66%), Gaps = 1/109 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
L+ + +F I+DP + +PI+FAS FL+++ ++R EI+GRN R QGP T++ T+ I
Sbjct: 467 TLERIEKNFVISDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQATVSRI 526
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
R+AIRE+R I V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 527 RDAIREQREITVQLINYTKSGKKFWNLFHLQPMRDQK-GELQYFIGVQL 574
>gi|302837812|ref|XP_002950465.1| phototropin [Volvox carteri f. nagariensis]
gi|300264470|gb|EFJ48666.1| phototropin [Volvox carteri f. nagariensis]
Length = 744
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 95/295 (32%), Positives = 150/295 (50%), Gaps = 43/295 (14%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+ L L +F + D ++ P+V+AS GF M+G+ E++G N R QG T+ + + +
Sbjct: 13 KVLAGLRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQK 72
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
IREAI++ V LLNY+KDGTPFW L ++ + DG+ + FV VQV + S +
Sbjct: 73 IREAIKKGEACSVRLLNYRKDGTPFWNLLTVTPI-KTPDGKVSKFVGVQVDVTS----KT 127
Query: 142 SGMSYSEDGG-------GSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIEDSC 194
G + +++ G RLRE V +++ D + +++ ++ +
Sbjct: 128 EGKALADNSGVPLLVKYDHRLRENV----AKKIVDDVTIAVEKAEGVEPGAASAAATAAG 183
Query: 195 EASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSF 254
+ R AA S P + L ++ RI+Q+F
Sbjct: 184 QGKPQGVRGAAPK------------------------SFPRVAL---DLATTVERIQQNF 216
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
V+ DP LPD P+V+ASDAFL+LTGY R +V+G+NCRFL G TD+ + Q+ AI
Sbjct: 217 VISDPTLPDCPIVFASDAFLELTGYSREDVLGRNCRFLQGPGTDSATVDQIREAI 271
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 81/131 (61%), Gaps = 2/131 (1%)
Query: 6 GLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN 65
G +SF R L + ++ + +F I+DP++ PIVFAS FL+++G+SR +++GRN
Sbjct: 192 GAAPKSFP-RVALDLATTVERIQQNFVISDPTLPDCPIVFASDAFLELTGYSREDVLGRN 250
Query: 66 GRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATH 125
R QGP T+ T+ +IREAIR I V +LNY K G PFW +F M+ + +DG
Sbjct: 251 CRFLQGPGTDSATVDQIREAIRTGTEITVRILNYTKQGRPFWNMFTMAPMR-DQDGSVRF 309
Query: 126 FVAVQVPIVSR 136
FV VQV + ++
Sbjct: 310 FVGVQVDVTAQ 320
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 233 LPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFL 292
+ G+ +S L L ++ +FV+ D LPD P+VYAS+ F +TGY +EV+G NCRFL
Sbjct: 1 MAGVPSPASQLTKVLAGLRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFL 60
Query: 293 NGVDTDTTVLYQVSIAI 309
G TD + ++ AI
Sbjct: 61 QGEGTDPKEVQKIREAI 77
>gi|20797092|emb|CAC94940.1| putative blue light receptor [Chlamydomonas reinhardtii]
Length = 750
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 95/289 (32%), Positives = 153/289 (52%), Gaps = 32/289 (11%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+ L L +F + D ++ P+V+AS GF M+G+ E++G N R QG T+ + + +
Sbjct: 13 KVLAGLRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQK 72
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
IR+AI++ V LLNY+KDGTPFW L ++ + DGR + FV VQV + S +
Sbjct: 73 IRDAIKKGEACSVRLLNYRKDGTPFWNLLTVTPI-KTPDGRVSKFVGVQVDVTS----KT 127
Query: 142 SGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIEDSCEASDLEK 201
G + +++ G L + + R+ + +++D D +A++ + G+E + +
Sbjct: 128 EGKALADNSGVPLL--VKYDHRLRDNVARTIVD-DVTIAVEKAE-GVEPGQASAVAAAAP 183
Query: 202 RKAATAIDNILSVLTHYSQLTGRLVCGKRCSLP-GMGFISSSLYISLGRIKQSFVLIDPH 260
A G R + P ++ L ++ RI+Q+F + DP
Sbjct: 184 LGAK----------------------GPRGTAPKSFPRVALDLATTVERIQQNFCISDPT 221
Query: 261 LPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
LPD P+V+ASDAFL+LTGY R EV+G+NCRFL G TD + Q+ AI
Sbjct: 222 LPDCPIVFASDAFLELTGYSREEVLGRNCRFLQGAGTDRGTVDQIRAAI 270
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 80/131 (61%), Gaps = 2/131 (1%)
Query: 6 GLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN 65
G +SF R L + ++ + +F I+DP++ PIVFAS FL+++G+SR E++GRN
Sbjct: 191 GTAPKSFP-RVALDLATTVERIQQNFCISDPTLPDCPIVFASDAFLELTGYSREEVLGRN 249
Query: 66 GRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATH 125
R QG T+R T+ +IR AI+E + V +LNY K G FW +F ++ +DG A
Sbjct: 250 CRFLQGAGTDRGTVDQIRAAIKEGSELTVRILNYTKAGKAFWNMFTLA-PMRDQDGHARF 308
Query: 126 FVAVQVPIVSR 136
FV VQV + ++
Sbjct: 309 FVGVQVDVTAQ 319
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 233 LPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFL 292
+ G+ +S L L ++ +FV+ D LPD P+VYAS+ F +TGY +EV+G NCRFL
Sbjct: 1 MAGVPAPASQLTKVLAGLRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFL 60
Query: 293 NGVDTDTTVLYQVSIAI 309
G TD + ++ AI
Sbjct: 61 QGEGTDPKEVQKIRDAI 77
>gi|159470479|ref|XP_001693387.1| phototropin [Chlamydomonas reinhardtii]
gi|158277645|gb|EDP03413.1| phototropin [Chlamydomonas reinhardtii]
Length = 750
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 95/289 (32%), Positives = 153/289 (52%), Gaps = 32/289 (11%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+ L L +F + D ++ P+V+AS GF M+G+ E++G N R QG T+ + + +
Sbjct: 13 KVLAGLRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQK 72
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
IR+AI++ V LLNY+KDGTPFW L ++ + DGR + FV VQV + S +
Sbjct: 73 IRDAIKKGEACSVRLLNYRKDGTPFWNLLTVTPI-KTPDGRVSKFVGVQVDVTS----KT 127
Query: 142 SGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIEDSCEASDLEK 201
G + +++ G L + + R+ + +++D D +A++ + G+E + +
Sbjct: 128 EGKALADNSGVPLL--VKYDHRLRDNVARTIVD-DVTIAVEKAE-GVEPGQASAVAAAAP 183
Query: 202 RKAATAIDNILSVLTHYSQLTGRLVCGKRCSLP-GMGFISSSLYISLGRIKQSFVLIDPH 260
A G R + P ++ L ++ RI+Q+F + DP
Sbjct: 184 LGAK----------------------GPRGTAPKSFPRVALDLATTVERIQQNFCISDPT 221
Query: 261 LPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
LPD P+V+ASDAFL+LTGY R EV+G+NCRFL G TD + Q+ AI
Sbjct: 222 LPDCPIVFASDAFLELTGYSREEVLGRNCRFLQGAGTDRGTVDQIRAAI 270
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 80/131 (61%), Gaps = 2/131 (1%)
Query: 6 GLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN 65
G +SF R L + ++ + +F I+DP++ PIVFAS FL+++G+SR E++GRN
Sbjct: 191 GTAPKSFP-RVALDLATTVERIQQNFCISDPTLPDCPIVFASDAFLELTGYSREEVLGRN 249
Query: 66 GRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATH 125
R QG T+R T+ +IR AI+E + V +LNY K G FW +F ++ +DG A
Sbjct: 250 CRFLQGAGTDRGTVDQIRAAIKEGSELTVRILNYTKAGKAFWNMFTLA-PMRDQDGHARF 308
Query: 126 FVAVQVPIVSR 136
FV VQV + ++
Sbjct: 309 FVGVQVDVTAQ 319
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 233 LPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFL 292
+ G+ +S L L ++ +FV+ D LPD P+VYAS+ F +TGY +EV+G NCRFL
Sbjct: 1 MAGVPAPASQLTKVLAGLRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFL 60
Query: 293 NGVDTDTTVLYQVSIAI 309
G TD + ++ AI
Sbjct: 61 QGEGTDPKEVQKIRDAI 77
>gi|20797097|emb|CAC94941.1| putative blue light receptor [Chlamydomonas reinhardtii]
Length = 749
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 95/289 (32%), Positives = 153/289 (52%), Gaps = 32/289 (11%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+ L L +F + D ++ P+V+AS GF M+G+ E++G N R QG T+ + + +
Sbjct: 13 KVLAGLRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQK 72
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
IR+AI++ V LLNY+KDGTPFW L ++ + DGR + FV VQV + S +
Sbjct: 73 IRDAIKKGEACSVRLLNYRKDGTPFWNLLTVTPI-KTPDGRVSKFVGVQVDVTS----KT 127
Query: 142 SGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIEDSCEASDLEK 201
G + +++ G L + + R+ + +++D D +A++ + G+E + +
Sbjct: 128 EGKALADNSGVPLL--VKYDHRLRDNVARTIVD-DVTIAVEKAE-GVEPGQASAVAAAAP 183
Query: 202 RKAATAIDNILSVLTHYSQLTGRLVCGKRCSLP-GMGFISSSLYISLGRIKQSFVLIDPH 260
A G R + P ++ L ++ RI+Q+F + DP
Sbjct: 184 LGAK----------------------GPRGTAPKSFPRVALDLATTVERIQQNFCISDPT 221
Query: 261 LPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
LPD P+V+ASDAFL+LTGY R EV+G+NCRFL G TD + Q+ AI
Sbjct: 222 LPDCPIVFASDAFLELTGYSREEVLGRNCRFLQGAGTDRGTVDQIRAAI 270
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 80/131 (61%), Gaps = 2/131 (1%)
Query: 6 GLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN 65
G +SF R L + ++ + +F I+DP++ PIVFAS FL+++G+SR E++GRN
Sbjct: 191 GTAPKSFP-RVALDLATTVERIQQNFCISDPTLPDCPIVFASDAFLELTGYSREEVLGRN 249
Query: 66 GRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATH 125
R QG T+R T+ +IR AI+E + V +LNY K G FW +F ++ +DG A
Sbjct: 250 CRFLQGAGTDRGTVDQIRAAIKEGSELTVRILNYTKAGKAFWNMFTLA-PMRDQDGHARF 308
Query: 126 FVAVQVPIVSR 136
FV VQV + ++
Sbjct: 309 FVGVQVDVTAQ 319
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 233 LPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFL 292
+ G+ +S L L ++ +FV+ D LPD P+VYAS+ F +TGY +EV+G NCRFL
Sbjct: 1 MAGVPAPASQLTKVLAGLRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFL 60
Query: 293 NGVDTDTTVLYQVSIAI 309
G TD + ++ AI
Sbjct: 61 QGEGTDPKEVQKIRDAI 77
>gi|255088732|ref|XP_002506288.1| blue light receptor [Micromonas sp. RCC299]
gi|226521560|gb|ACO67546.1| blue light receptor [Micromonas sp. RCC299]
Length = 870
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 100/288 (34%), Positives = 139/288 (48%), Gaps = 46/288 (15%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL L +FT+ DP++ PIV+AS GFLKM+G+ E++ RN R QG TN + +I
Sbjct: 55 ALASLRHTFTVCDPTLPDCPIVYASDGFLKMTGYPAEEVLNRNCRFLQGEETNMDDVRKI 114
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
EA+++ I V LLNY+KDG FW L ++ V DG F+ VQV + R
Sbjct: 115 SEAVKKGERITVRLLNYRKDGQKFWNLLTVAPV-KLPDGTVAKFIGVQVDVSDRTEGNAD 173
Query: 143 GMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIEDSCEASDLEKR 202
+ +D G L L D L+ ++ D+EK
Sbjct: 174 NSAAMKDTKGLPL-------------------------LVKYDQRLKDQNFNRVDDVEK- 207
Query: 203 KAATAIDNILSVLTHYS-QLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHL 261
+VLT L V R L + +L RI+QSFV+ DP L
Sbjct: 208 ----------AVLTGEGVDLDANPVAANRGGL--------DMATTLERIQQSFVIADPSL 249
Query: 262 PDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
PD P+V+ASD FL TGY R E++G+NCRFL G TD + + ++ AI
Sbjct: 250 PDCPIVFASDGFLDFTGYTREEILGRNCRFLQGPRTDRSAVAEIRKAI 297
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 58/121 (47%), Positives = 72/121 (59%), Gaps = 1/121 (0%)
Query: 14 NRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPR 73
NR L + L+ + SF I DPS+ PIVFAS GFL +G++R EI+GRN R QGPR
Sbjct: 225 NRGGLDMATTLERIQQSFVIADPSLPDCPIVFASDGFLDFTGYTREEILGRNCRFLQGPR 284
Query: 74 TNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
T+R + EIR+AI E V LLNY K G PFW +F M+ V E G F VQV +
Sbjct: 285 TDRSAVAEIRKAIDEGSECTVRLLNYTKQGKPFWNMFTMAPVR-DEQGNVRFFAGVQVDV 343
Query: 134 V 134
Sbjct: 344 T 344
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 47/70 (67%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S L +L ++ +F + DP LPD P+VYASD FLK+TGY EV+ +NCRFL G +T+
Sbjct: 49 SKDLTNALASLRHTFTVCDPTLPDCPIVYASDGFLKMTGYPAEEVLNRNCRFLQGEETNM 108
Query: 300 TVLYQVSIAI 309
+ ++S A+
Sbjct: 109 DDVRKISEAV 118
>gi|20260484|gb|AAM13140.1| unknown protein [Arabidopsis thaliana]
gi|31711968|gb|AAP68340.1| At5g58140 [Arabidopsis thaliana]
Length = 549
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 108/334 (32%), Positives = 168/334 (50%), Gaps = 45/334 (13%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + AL L +F ++D + PIV+AS GF M+G+S EI+GRN R QGP T
Sbjct: 119 RVSQELKTALSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDT 178
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPI 133
++ + +IR+ ++ + LLNYKKDGTPFW L ++ + K+D G F+ +QV +
Sbjct: 179 DKNEVAKIRDCVKNGKSYCGRLLNYKKDGTPFWNLLTVTPI--KDDQGNTIKFIGMQVEV 236
Query: 134 ------VSRKHMRNSGMSYSEDGGGSRLREIVFGSC---------RREVCSDSLLDLDRV 178
V+ K +R +G+S S +R +E S R+ +S+ + D +
Sbjct: 237 SKYTEGVNDKALRPNGLSKSLIRYDARQKEKALDSITEVVQTIRHRKSQVQESVSN-DTM 295
Query: 179 LALDSDDT---GLEIEDSCEASDL------------EKRKAATAIDNILSVLTHYSQLTG 223
+ DS T G + S EAS K K++ L + +
Sbjct: 296 VKPDSSTTPTPGRQTRQSDEASKSFRTPGRVSTPTGSKLKSSNNRHEDLLRMEPEELMLS 355
Query: 224 RLVCGKRCSLP--------GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLK 275
V G+R S G L +L RI+++FV+ DP LPD P+++ASD+FL+
Sbjct: 356 TEVIGQRDSWDLSDRERDIRQGI---DLATTLERIEKNFVISDPRLPDNPIIFASDSFLE 412
Query: 276 LTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
LT Y R E++G+NCRFL G +TD + ++ AI
Sbjct: 413 LTEYSREEILGRNCRFLQGPETDQATVQKIRDAI 446
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 73/109 (66%), Gaps = 1/109 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
L+ + +F I+DP + +PI+FAS FL+++ +SR EI+GRN R QGP T++ T+ +I
Sbjct: 383 TLERIEKNFVISDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDQATVQKI 442
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
R+AIR++R I V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 443 RDAIRDQREITVQLINYTKSGKKFWNLFHLQPMRDQK-GELQYFIGVQL 490
>gi|30697015|ref|NP_568874.2| phototropin 2 [Arabidopsis thaliana]
gi|332009618|gb|AED97001.1| phototropin 2 [Arabidopsis thaliana]
Length = 689
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 108/334 (32%), Positives = 168/334 (50%), Gaps = 45/334 (13%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + AL L +F ++D + PIV+AS GF M+G+S EI+GRN R QGP T
Sbjct: 119 RVSQELKTALSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDT 178
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPI 133
++ + +IR+ ++ + LLNYKKDGTPFW L ++ + K+D G F+ +QV +
Sbjct: 179 DKNEVAKIRDCVKNGKSYCGRLLNYKKDGTPFWNLLTVTPI--KDDQGNTIKFIGMQVEV 236
Query: 134 ------VSRKHMRNSGMSYSEDGGGSRLREIVFGSC---------RREVCSDSLLDLDRV 178
V+ K +R +G+S S +R +E S R+ +S+ + D +
Sbjct: 237 SKYTEGVNDKALRPNGLSKSLIRYDARQKEKALDSITEVVQTIRHRKSQVQESVSN-DTM 295
Query: 179 LALDSDDT---GLEIEDSCEASDL------------EKRKAATAIDNILSVLTHYSQLTG 223
+ DS T G + S EAS K K++ L + +
Sbjct: 296 VKPDSSTTPTPGRQTRQSDEASKSFRTPGRVSTPTGSKLKSSNNRHEDLLRMEPEELMLS 355
Query: 224 RLVCGKRCSLP--------GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLK 275
V G+R S G L +L RI+++FV+ DP LPD P+++ASD+FL+
Sbjct: 356 TEVIGQRDSWDLSDRERDIRQGI---DLATTLERIEKNFVISDPRLPDNPIIFASDSFLE 412
Query: 276 LTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
LT Y R E++G+NCRFL G +TD + ++ AI
Sbjct: 413 LTEYSREEILGRNCRFLQGPETDQATVQKIRDAI 446
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 73/109 (66%), Gaps = 1/109 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
L+ + +F I+DP + +PI+FAS FL+++ +SR EI+GRN R QGP T++ T+ +I
Sbjct: 383 TLERIEKNFVISDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDQATVQKI 442
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
R+AIR++R I V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 443 RDAIRDQREITVQLINYTKSGKKFWNLFHLQPMRDQK-GELQYFIGVQL 490
>gi|297793331|ref|XP_002864550.1| hypothetical protein ARALYDRAFT_495918 [Arabidopsis lyrata subsp.
lyrata]
gi|297310385|gb|EFH40809.1| hypothetical protein ARALYDRAFT_495918 [Arabidopsis lyrata subsp.
lyrata]
Length = 915
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 106/333 (31%), Positives = 167/333 (50%), Gaps = 45/333 (13%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + AL L +F ++D + PIV+AS GF M+G+S EI+GRN R QGP T
Sbjct: 119 RVSQELKTALSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDT 178
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPI 133
++ + +IR+ ++ + LLNYKKDGTPFW L ++ + K+D G F+ +QV +
Sbjct: 179 DKNEVAKIRDCVKNGKSYCGRLLNYKKDGTPFWNLLTVTPI--KDDQGNTIKFIGMQVEV 236
Query: 134 ------VSRKHMRNSGMSYSEDGGGSRLREIVFGSC---------RREVCSDSLLDLDRV 178
V+ K +R +G+S S +R +E S R+ +S+ + + V
Sbjct: 237 SKYTEGVNDKVLRPNGLSKSLIRYDARQKEKALDSITEVVQTIRHRKSQVQESVSNSNMV 296
Query: 179 LALDSDDTGLEIEDSCEASDL------------EKRKAATAIDNILSVLTHYSQLTGRLV 226
S G + S EAS K K+++ L + + V
Sbjct: 297 TPDSSTTPGRQNRQSDEASKSFRTPGRVSTPTGTKLKSSSNKHEDLLRMEPEELMLSTEV 356
Query: 227 CGKRCSL----------PGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKL 276
G+R S G+ L +L RI+++FV+ DP LPD P+++ASD+FL+L
Sbjct: 357 IGQRDSWDLSDRERDIRQGI-----DLATTLERIEKNFVISDPRLPDNPIIFASDSFLEL 411
Query: 277 TGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
T Y R E++G+NCRFL G +TD + ++ AI
Sbjct: 412 TEYTREEILGRNCRFLQGPETDQATVQKIRDAI 444
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 72/109 (66%), Gaps = 1/109 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
L+ + +F I+DP + +PI+FAS FL+++ ++R EI+GRN R QGP T++ T+ +I
Sbjct: 381 TLERIEKNFVISDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQATVQKI 440
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
R+AIR++ I V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 441 RDAIRDQTEITVQLINYTKSGKKFWNLFHLQPMRDQK-GELQYFIGVQL 488
>gi|145362057|ref|NP_851212.2| phototropin 2 [Arabidopsis thaliana]
gi|332009620|gb|AED97003.1| phototropin 2 [Arabidopsis thaliana]
Length = 898
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 108/336 (32%), Positives = 169/336 (50%), Gaps = 49/336 (14%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + AL L +F ++D + PIV+AS GF M+G+S EI+GRN R QGP T
Sbjct: 119 RVSQELKTALSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDT 178
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPI 133
++ + +IR+ ++ + LLNYKKDGTPFW L ++ + K+D G F+ +QV +
Sbjct: 179 DKNEVAKIRDCVKNGKSYCGRLLNYKKDGTPFWNLLTVTPI--KDDQGNTIKFIGMQVEV 236
Query: 134 ------VSRKHMRNSGMSYSEDGGGSRLREIVFGSC---------RREVCSDSLLDLDRV 178
V+ K +R +G+S S +R +E S R+ +S+ + D +
Sbjct: 237 SKYTEGVNDKALRPNGLSKSLIRYDARQKEKALDSITEVVQTIRHRKSQVQESVSN-DTM 295
Query: 179 LALDSDDT---GLEIEDSCEASDL------------EKRKAATAIDNILSVLTHYSQLTG 223
+ DS T G + S EAS K K++ L + +
Sbjct: 296 VKPDSSTTPTPGRQTRQSDEASKSFRTPGRVSTPTGSKLKSSNNRHEDLLRMEPEELMLS 355
Query: 224 RLVCGKRCSL----------PGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAF 273
V G+R S G+ L +L RI+++FV+ DP LPD P+++ASD+F
Sbjct: 356 TEVIGQRDSWDLSDRERDIRQGI-----DLATTLERIEKNFVISDPRLPDNPIIFASDSF 410
Query: 274 LKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
L+LT Y R E++G+NCRFL G +TD + ++ AI
Sbjct: 411 LELTEYSREEILGRNCRFLQGPETDQATVQKIRDAI 446
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 73/109 (66%), Gaps = 1/109 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
L+ + +F I+DP + +PI+FAS FL+++ +SR EI+GRN R QGP T++ T+ +I
Sbjct: 383 TLERIEKNFVISDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDQATVQKI 442
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
R+AIR++R I V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 443 RDAIRDQREITVQLINYTKSGKKFWNLFHLQPMRDQK-GELQYFIGVQL 490
>gi|30697007|ref|NP_851210.1| phototropin 2 [Arabidopsis thaliana]
gi|30697010|ref|NP_851211.1| phototropin 2 [Arabidopsis thaliana]
gi|82593023|sp|P93025.2|PHOT2_ARATH RecName: Full=Phototropin-2; AltName: Full=Defective in chloroplast
avoidance protein 1; AltName: Full=Non-phototropic
hypocotyl 1-like protein 1; Short=AtKin7;
Short=NPH1-like protein 1
gi|5391442|gb|AAC27293.2| non phototropic hypocotyl 1-like [Arabidopsis thaliana]
gi|10176790|dbj|BAB09904.1| unnamed protein product [Arabidopsis thaliana]
gi|332009619|gb|AED97002.1| phototropin 2 [Arabidopsis thaliana]
gi|332009621|gb|AED97004.1| phototropin 2 [Arabidopsis thaliana]
Length = 915
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 108/336 (32%), Positives = 169/336 (50%), Gaps = 49/336 (14%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + AL L +F ++D + PIV+AS GF M+G+S EI+GRN R QGP T
Sbjct: 119 RVSQELKTALSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDT 178
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPI 133
++ + +IR+ ++ + LLNYKKDGTPFW L ++ + K+D G F+ +QV +
Sbjct: 179 DKNEVAKIRDCVKNGKSYCGRLLNYKKDGTPFWNLLTVTPI--KDDQGNTIKFIGMQVEV 236
Query: 134 ------VSRKHMRNSGMSYSEDGGGSRLREIVFGSC---------RREVCSDSLLDLDRV 178
V+ K +R +G+S S +R +E S R+ +S+ + D +
Sbjct: 237 SKYTEGVNDKALRPNGLSKSLIRYDARQKEKALDSITEVVQTIRHRKSQVQESVSN-DTM 295
Query: 179 LALDSDDT---GLEIEDSCEASDL------------EKRKAATAIDNILSVLTHYSQLTG 223
+ DS T G + S EAS K K++ L + +
Sbjct: 296 VKPDSSTTPTPGRQTRQSDEASKSFRTPGRVSTPTGSKLKSSNNRHEDLLRMEPEELMLS 355
Query: 224 RLVCGKRCSL----------PGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAF 273
V G+R S G+ L +L RI+++FV+ DP LPD P+++ASD+F
Sbjct: 356 TEVIGQRDSWDLSDRERDIRQGI-----DLATTLERIEKNFVISDPRLPDNPIIFASDSF 410
Query: 274 LKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
L+LT Y R E++G+NCRFL G +TD + ++ AI
Sbjct: 411 LELTEYSREEILGRNCRFLQGPETDQATVQKIRDAI 446
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 73/109 (66%), Gaps = 1/109 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
L+ + +F I+DP + +PI+FAS FL+++ +SR EI+GRN R QGP T++ T+ +I
Sbjct: 383 TLERIEKNFVISDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDQATVQKI 442
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
R+AIR++R I V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 443 RDAIRDQREITVQLINYTKSGKKFWNLFHLQPMRDQK-GELQYFIGVQL 490
>gi|412985223|emb|CCO20248.1| phototropin [Bathycoccus prasinos]
Length = 888
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 102/291 (35%), Positives = 147/291 (50%), Gaps = 42/291 (14%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
V +AL L +FT+ D + PIV+AS FL+M+G+ EII N R QG T+ ++
Sbjct: 68 VAQALATLRHTFTVCDATAPDCPIVYASDSFLQMTGYPSEEIIHHNCRFLQGKDTDPESV 127
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
++R+A++ + V LLNY+KDGTPFW ++ V DG ++ VQV V+ K
Sbjct: 128 KKLRDAVKAGERVSVRLLNYRKDGTPFWNYLTIAPV-KLADGTVVKYIGVQVD-VTDKTE 185
Query: 140 RNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIEDSC-EASD 198
N S +D G L L+ D LA + E+E++ A+
Sbjct: 186 GNVAPSVLKDNDGFPL----------------LVRYDARLAAQNLGAFTEVEEAVLSATG 229
Query: 199 LEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLID 258
L K++ + D+ LT S GM S +L RI++SFV+ D
Sbjct: 230 L---KSSKSFDDDQQALTSRS---------------GMDMAS-----TLERIQESFVITD 266
Query: 259 PHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
P LPD P+V+ASD FL TGY R E++G+NCRFL G DTD + + AI
Sbjct: 267 PSLPDHPIVFASDGFLSFTGYTREEILGRNCRFLQGKDTDQNSVKAIRDAI 317
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 78/126 (61%), Gaps = 1/126 (0%)
Query: 9 EQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM 68
+Q+ +R + + L+ + +SF ITDPS+ HPIVFAS GFL +G++R EI+GRN R
Sbjct: 240 QQALTSRSGMDMASTLERIQESFVITDPSLPDHPIVFASDGFLSFTGYTREEILGRNCRF 299
Query: 69 FQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVA 128
QG T++ ++ IR+AI + V LLNY K+G PFW +F ++ V E G+ F
Sbjct: 300 LQGKDTDQNSVKAIRDAIDAGSEVTVRLLNYTKNGRPFWNMFTLAPVRDDE-GKVRFFAG 358
Query: 129 VQVPIV 134
VQV +
Sbjct: 359 VQVDVT 364
>gi|308812864|ref|XP_003083739.1| putative blue light receptor (ISS) [Ostreococcus tauri]
gi|116055620|emb|CAL58288.1| putative blue light receptor (ISS) [Ostreococcus tauri]
Length = 738
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 140/292 (47%), Gaps = 52/292 (17%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
V A +FT+ D + PIV+AS GFL+M+G++ AE+IG N R QG +TN+ +
Sbjct: 20 VARAFGAFDHTFTVCDATKPDCPIVYASDGFLRMTGYAAAEVIGYNCRFLQGEKTNKNDV 79
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
E+REAI+ V LLNYKKDGTPFW ++ V DG ++ VQ
Sbjct: 80 RELREAIKNGDRWSVRLLNYKKDGTPFWNYLVVAPV-KLADGTVVKYIGVQT-------- 130
Query: 140 RNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIEDSCE--AS 197
D+ V D+ + G+E ++ + S
Sbjct: 131 ----------------------------------DVTEVKDADTGERGIEFDEKGQPVPS 156
Query: 198 DLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLI 257
+ R AA + + V G +R + GM S +L RI+QSFV+
Sbjct: 157 RYDARAAAATLGRVSEVEQAVRTAEGLGNQAQRRT--GMDLAS-----TLERIEQSFVIT 209
Query: 258 DPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
DP LPD P+V+ASD F++ TGY +E++G+NCRFL G TD + ++ AI
Sbjct: 210 DPSLPDHPIVFASDGFMEFTGYSVDEILGRNCRFLQGPKTDRAAVAKIREAI 261
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 69/112 (61%), Gaps = 1/112 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + SF ITDPS+ HPIVFAS GF++ +G+S EI+GRN R QGP+T+R + +IR
Sbjct: 199 LERIEQSFVITDPSLPDHPIVFASDGFMEFTGYSVDEILGRNCRFLQGPKTDRAAVAKIR 258
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135
EAI V LLNY K G FW +F ++ V E G F VQV I +
Sbjct: 259 EAIENGEECTVRLLNYTKTGEEFWNMFTLAPV-RDEQGIVRFFAGVQVDITA 309
>gi|219363497|ref|NP_001136819.1| hypothetical protein [Zea mays]
gi|194697234|gb|ACF82701.1| unknown [Zea mays]
gi|414875950|tpg|DAA53081.1| TPA: hypothetical protein ZEAMMB73_525936 [Zea mays]
gi|414875951|tpg|DAA53082.1| TPA: hypothetical protein ZEAMMB73_525936 [Zea mays]
gi|414875952|tpg|DAA53083.1| TPA: hypothetical protein ZEAMMB73_525936 [Zea mays]
gi|414875953|tpg|DAA53084.1| TPA: hypothetical protein ZEAMMB73_525936 [Zea mays]
gi|414875954|tpg|DAA53085.1| TPA: hypothetical protein ZEAMMB73_525936 [Zea mays]
gi|414875955|tpg|DAA53086.1| TPA: hypothetical protein ZEAMMB73_525936 [Zea mays]
Length = 207
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 89/135 (65%)
Query: 8 IEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGR 67
S RY+ WV E LDELP SF +TDP++ GHPIV+ASRG ++G++ +++GRN R
Sbjct: 20 FASSLTARYSDWVLETLDELPGSFLLTDPALPGHPIVYASRGLAALTGYAPRDVLGRNAR 79
Query: 68 MFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFV 127
+FQG T+R T+ +REA+R RP + +LNY++DG P W+L ++ +F DG HF+
Sbjct: 80 LFQGAATDRATVAGVREAVRAHRPHQAAILNYRRDGAPHWVLLHLAPLFHARDGTLLHFL 139
Query: 128 AVQVPIVSRKHMRNS 142
AVQVPI R +
Sbjct: 140 AVQVPIAPAAVARGA 154
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
+L + SF+L DP LP P+VYAS LTGY +V+G+N R G TD + V
Sbjct: 35 TLDELPGSFLLTDPALPGHPIVYASRGLAALTGYAPRDVLGRNARLFQGAATDRATVAGV 94
Query: 306 SIAISPYPKKKSIYMEYVR 324
A+ + ++ + Y R
Sbjct: 95 REAVRAHRPHQAAILNYRR 113
>gi|326525301|dbj|BAK07920.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 197
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 89/128 (69%)
Query: 8 IEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGR 67
+ S RY+ WV E LDEL SF +TDP++ GHPIV+ASRG ++G+ R +++GRN R
Sbjct: 9 LAASLTARYSEWVLEELDELQGSFLLTDPAMPGHPIVYASRGLASLTGYPRRDLLGRNAR 68
Query: 68 MFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFV 127
+FQG T+R + +REA+R +R +V +LNY++DG P W+L ++ VF DGR HF+
Sbjct: 69 LFQGAATDRAAVSGLREAVRAQRAHQVAILNYRRDGAPHWVLLHLAPVFHAADGRVLHFL 128
Query: 128 AVQVPIVS 135
AVQVPI +
Sbjct: 129 AVQVPIAA 136
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%)
Query: 247 LGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVS 306
L ++ SF+L DP +P P+VYAS LTGY R +++G+N R G TD + +
Sbjct: 25 LDELQGSFLLTDPAMPGHPIVYASRGLASLTGYPRRDLLGRNARLFQGAATDRAAVSGLR 84
Query: 307 IAISPYPKKKSIYMEYVR 324
A+ + + Y R
Sbjct: 85 EAVRAQRAHQVAILNYRR 102
>gi|356542583|ref|XP_003539746.1| PREDICTED: phototropin-1-like [Glycine max]
Length = 977
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 104/354 (29%), Positives = 160/354 (45%), Gaps = 70/354 (19%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL +F ++D + +PI++AS GF KM+G++ E+IGRN R QG T+ +
Sbjct: 168 LRDALSAFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFMQGADTDPDDV 227
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI------ 133
+IREA++ LLNYKKDGTPFW L ++ + +DGR F+ +QV +
Sbjct: 228 AKIREALQSGSTYCGRLLNYKKDGTPFWNLLTIAPI-KDDDGRVLKFIGMQVEVSKHTEG 286
Query: 134 VSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIEDS 193
K +R +G+ S +R +E S+ LL + R AL I+ S
Sbjct: 287 AKEKMLRPNGLPESLIRYDARQKEKA-----NSTVSELLLAVRRPRALSESAGRPMIKKS 341
Query: 194 C---EASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPG-----------MGFI 239
+A D K++ ++ S R + LP MGFI
Sbjct: 342 ASGDDAQDKPPEKSSRRKSESVASFRRKSHAGDRSSMERITELPEKKHKSSRRRSFMGFI 401
Query: 240 SSS--------------------------------------------LYISLGRIKQSFV 255
S L +L RI+++FV
Sbjct: 402 RKSQSNFGSFNDEAVVENSSESSDEDDERPESFDGKVQKKEKRKGLDLATTLERIEKNFV 461
Query: 256 LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD + ++ AI
Sbjct: 462 ITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVRKIREAI 515
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
Query: 10 QSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMF 69
Q R L + L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R
Sbjct: 439 QKKEKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFL 498
Query: 70 QGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAV 129
QGP T+ T+ +IREAI + + V L+NY K G FW LF + + ++ G +F+ V
Sbjct: 499 QGPETDPATVRKIREAIDNQTDVTVQLINYTKSGKKFWNLFHLQPMRDQK-GEVQYFIGV 557
Query: 130 QV 131
Q+
Sbjct: 558 QL 559
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 47/75 (62%)
Query: 235 GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG 294
G+ +S L +L +Q+FV+ D PD P++YAS F K+TGY EV+G+NCRF+ G
Sbjct: 160 GIPRVSEDLRDALSAFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFMQG 219
Query: 295 VDTDTTVLYQVSIAI 309
DTD + ++ A+
Sbjct: 220 ADTDPDDVAKIREAL 234
>gi|145355076|ref|XP_001421797.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582035|gb|ABP00091.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 734
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 94/290 (32%), Positives = 134/290 (46%), Gaps = 41/290 (14%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
V A +FT+ D + PIV+AS GFL+M+ + E+IG N R QG T+ +
Sbjct: 20 VARAFAAFDHTFTVCDATREDCPIVYASDGFLRMTQYGADEVIGHNCRFLQGEATDGNDV 79
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
E+REAI+ V LLNYKKDGTPFW ++ V DG ++ VQV + K
Sbjct: 80 RELREAIKRGDRWSVRLLNYKKDGTPFWNYLVVAPV-KLADGTVAKYIGVQVDVTEVKDA 138
Query: 140 RNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIEDSCEASDL 199
G R +D D+ G+ + S
Sbjct: 139 TT----------GER-------------------------GIDFDEEGMPV-----PSRY 158
Query: 200 EKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDP 259
+ R AA ++ + V G G + G + L +L RI+QSFV+ DP
Sbjct: 159 DARAAAVSLGRVSEVENAVRAAEGLSEDGVDDAGARKGRVGLDLASTLERIEQSFVITDP 218
Query: 260 HLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
LPD P+V+ASD F+ TGY +E++G+NCRFL G TD + ++ AI
Sbjct: 219 SLPDHPIVFASDGFMDFTGYSVDEILGRNCRFLQGPKTDRAAVAKIRQAI 268
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 71/122 (58%), Gaps = 1/122 (0%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R L + L+ + SF ITDPS+ HPIVFAS GF+ +G+S EI+GRN R QGP+T
Sbjct: 197 RVGLDLASTLERIEQSFVITDPSLPDHPIVFASDGFMDFTGYSVDEILGRNCRFLQGPKT 256
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
+R + +IR+AI V LLNY K G FW +F ++ V + G F VQV I
Sbjct: 257 DRAAVAKIRQAIELGEECTVRLLNYTKSGKQFWNMFTLAPV-RDDQGIVRFFAGVQVDIT 315
Query: 135 SR 136
+
Sbjct: 316 AH 317
>gi|302802410|ref|XP_002982959.1| hypothetical protein SELMODRAFT_10296 [Selaginella moellendorffii]
gi|300149112|gb|EFJ15768.1| hypothetical protein SELMODRAFT_10296 [Selaginella moellendorffii]
Length = 824
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 157/311 (50%), Gaps = 25/311 (8%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL +F + D + PI++AS GF M+G++ E+IGRN R QG T+ +
Sbjct: 72 LKDALSSFQQTFVVCDATDPELPILYASAGFFSMTGYTAKEVIGRNCRFLQGTETDPADV 131
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS---- 135
+IR A+ + + LLNYKK+GTPFW L ++ + EDG+ ++ + V +
Sbjct: 132 SKIRVALEQGKSFCGRLLNYKKNGTPFWNLLTIAPI-KDEDGKVLKYIGMLVEVSQFTEG 190
Query: 136 --RKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIEDS 193
K +R +GM S +R ++ V S V S D+ D + ++ D
Sbjct: 191 SKDKAVRPNGMPESLIKYDARQKDSVVSSVSELVEVFSTSKTDQSNDHDRRASAGKLTDV 250
Query: 194 CEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISS------------ 241
EAS ++ K ++LS L + + + + + +L +
Sbjct: 251 PEASPVKASKRTRRSSSLLSFLRRHVRASAEI---DQLTLKTADNVDDFPEDFQRKKEIR 307
Query: 242 ---SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G DT+
Sbjct: 308 RGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGKNCRFLQGPDTN 367
Query: 299 TTVLYQVSIAI 309
+ ++ AI
Sbjct: 368 QETVTRIRYAI 378
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 71/108 (65%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+G+N R QGP TN+ T+ IR
Sbjct: 316 LERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGKNCRFLQGPDTNQETVTRIR 375
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
AIR++R I V LLNY K G PFW LF + + + G +F+ VQ+
Sbjct: 376 YAIRDQRSITVQLLNYTKRGKPFWNLFHLQPMRDNK-GELQYFIGVQL 422
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 48/76 (63%)
Query: 234 PGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLN 293
P + +S L +L +Q+FV+ D P++P++YAS F +TGY EV+G+NCRFL
Sbjct: 63 PHIPRVSEDLKDALSSFQQTFVVCDATDPELPILYASAGFFSMTGYTAKEVIGRNCRFLQ 122
Query: 294 GVDTDTTVLYQVSIAI 309
G +TD + ++ +A+
Sbjct: 123 GTETDPADVSKIRVAL 138
>gi|168005245|ref|XP_001755321.1| PHOTB3 phototropin blue light photoreceptor [Physcomitrella patens
subsp. patens]
gi|162693449|gb|EDQ79801.1| PHOTB3 phototropin blue light photoreceptor [Physcomitrella patens
subsp. patens]
Length = 732
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 97/307 (31%), Positives = 149/307 (48%), Gaps = 38/307 (12%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R T + EAL +F ITD HPIVFASRGF M+G+S E+IG+N R QGP T
Sbjct: 4 RVTKGLLEALTSFKQTFVITDAMRLDHPIVFASRGFFTMTGYSPEEVIGQNCRFLQGPDT 63
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI- 133
+ + + +IR ++ +P LLNY+K+ TPFW + ++ + E+ R + +QV +
Sbjct: 64 DPKEVEKIRHGLKAGKPFCGRLLNYRKNRTPFWNILTITPI-KDENDRVIKCIGMQVEMS 122
Query: 134 --------VSR--KHMRNSGMSYSEDGGGSRLREI-VFGSCRREVCSDSLLDLDRVLALD 182
V+R + S + Y E S + + V E SL+ + + L
Sbjct: 123 KYTEGVKSVARCPNGLPESLIRYDEMATESVTQLVKVLKKPLSEF--QSLVGIGKSQRLQ 180
Query: 183 SDDTGLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSS 242
D T E+ E+ + ++ +L G R +
Sbjct: 181 EDTTKFELSPGVVMLGHEQPETQDVLNRML---------------GMRRGI--------D 217
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L ++ RI ++FV+ DP LPD P+++ASD FL+LT Y R E++G NCRFL G D D +
Sbjct: 218 LATTIERIDRNFVITDPRLPDNPIIFASDDFLELTEYSREEILGHNCRFLQGRDKDQNTV 277
Query: 303 YQVSIAI 309
Q+ +I
Sbjct: 278 QQIRDSI 284
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 65/102 (63%), Gaps = 1/102 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+F ITDP + +PI+FAS FL+++ +SR EI+G N R QG ++ T+ +IR++IRE
Sbjct: 228 NFVITDPRLPDNPIIFASDDFLELTEYSREEILGHNCRFLQGRDKDQNTVQQIRDSIREN 287
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
R I V LLNY K G PFW LF + + G +F+ VQ+
Sbjct: 288 RDITVQLLNYTKSGKPFWNLFHLQ-AMRDQKGELQYFIGVQL 328
>gi|302764126|ref|XP_002965484.1| hypothetical protein SELMODRAFT_230655 [Selaginella moellendorffii]
gi|300166298|gb|EFJ32904.1| hypothetical protein SELMODRAFT_230655 [Selaginella moellendorffii]
Length = 952
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 158/311 (50%), Gaps = 25/311 (8%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL +F + D + PI++AS GF M+G++ E+IGRN R QG T+ +
Sbjct: 185 LKDALSSFQQTFVVCDATDPELPILYASAGFFSMTGYTAKEVIGRNCRFLQGTETDPVDV 244
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS---- 135
+IR A+ + + LLNYKK+GTPFW L ++ + EDG+ ++ + V +
Sbjct: 245 SKIRVALEQGKSFCGRLLNYKKNGTPFWNLLTIAPI-KDEDGKVLKYIGMLVEVSQFTEG 303
Query: 136 --RKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIEDS 193
K +R +GM S +R ++ V S V S D+ D + ++ D
Sbjct: 304 SKDKAVRPNGMPESLIKYDARQKDSVVSSVSELVEVFSTSKRDQSNDHDRRASAGKLTDV 363
Query: 194 CEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISS------------ 241
EAS ++ K ++LS L +++ + + + +L +
Sbjct: 364 PEASPVKASKRTRRSSSLLSFLRRHAKDSAEI---DQLTLKTADNVDDFPEDFQRKKEIR 420
Query: 242 ---SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G DT+
Sbjct: 421 RGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGKNCRFLQGPDTN 480
Query: 299 TTVLYQVSIAI 309
+ ++ AI
Sbjct: 481 QETVTRIRYAI 491
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 71/108 (65%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+G+N R QGP TN+ T+ IR
Sbjct: 429 LERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGKNCRFLQGPDTNQETVTRIR 488
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
AIR+++ I V LLNY K G PFW LF + + + G +F+ VQ+
Sbjct: 489 YAIRDQKSITVQLLNYTKRGKPFWNLFHLQPMRDNK-GELQYFIGVQL 535
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 48/76 (63%)
Query: 234 PGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLN 293
P + +S L +L +Q+FV+ D P++P++YAS F +TGY EV+G+NCRFL
Sbjct: 176 PHIPRVSEDLKDALSSFQQTFVVCDATDPELPILYASAGFFSMTGYTAKEVIGRNCRFLQ 235
Query: 294 GVDTDTTVLYQVSIAI 309
G +TD + ++ +A+
Sbjct: 236 GTETDPVDVSKIRVAL 251
>gi|73760084|dbj|BAE20160.1| phototropin [Mougeotia scalaris]
gi|73760094|dbj|BAE20165.1| phototropin [Mougeotia scalaris]
Length = 839
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 95/318 (29%), Positives = 155/318 (48%), Gaps = 36/318 (11%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL +F + D + P++FAS GF +M+G+S E+IG+N R QGP T+R +
Sbjct: 38 LKDALTAFQQTFVMCDATKPNTPVMFASEGFYRMTGYSAKEVIGKNCRFLQGPETDRSEV 97
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPIVSRKH 138
++++A+ + + LLNY+KDG+ FW L +S V K+D GR F+ +QV +
Sbjct: 98 EKLKQALLDGQSWCGRLLNYRKDGSSFWNLLTVSPV--KDDSGRVVKFIGMQVEVSKFTE 155
Query: 139 MRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLL----DLDRVLALDSDDTGLEIEDSC 194
+N + S +R EV + LL + + +++ +++
Sbjct: 156 GKNDDIKRPNQLPVSLIRYDDRQKDEAEVRVEELLQDMKESESPAEVEAKVQTVQVSVPA 215
Query: 195 EASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGM---GFISS---------- 241
+ S L K A + T S G+ K +P + G S
Sbjct: 216 QPSKLSKEAPAE------TKKTRRSSYFGKNAAPKAEEVPPVFEPGVEVSLLMEDELDTM 269
Query: 242 ----------SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRF 291
L +L RI+++FV+ DP LPD P+++ASD FL+LT Y R E++G+NCRF
Sbjct: 270 AVEKKHRHGIDLATTLERIQKNFVITDPRLPDNPIIFASDDFLELTEYTREEIIGRNCRF 329
Query: 292 LNGVDTDTTVLYQVSIAI 309
L G DTD + ++ AI
Sbjct: 330 LQGKDTDKETVAKIRHAI 347
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 79/131 (60%), Gaps = 1/131 (0%)
Query: 1 MDSQLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAE 60
M+ +L + +R+ + + L+ + +F ITDP + +PI+FAS FL+++ ++R E
Sbjct: 262 MEDELDTMAVEKKHRHGIDLATTLERIQKNFVITDPRLPDNPIIFASDDFLELTEYTREE 321
Query: 61 IIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED 120
IIGRN R QG T++ T+ +IR AI + I V LLNY K G PFW LF + V +
Sbjct: 322 IIGRNCRFLQGKDTDKETVAKIRHAIDNHQDITVQLLNYTKSGKPFWNLFHLQAVRDTK- 380
Query: 121 GRATHFVAVQV 131
GR +F+ VQ+
Sbjct: 381 GRLQYFIGVQL 391
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 236 MGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGV 295
+G S L +L +Q+FV+ D P+ P+++AS+ F ++TGY EV+G+NCRFL G
Sbjct: 31 LGEASQGLKDALTAFQQTFVMCDATKPNTPVMFASEGFYRMTGYSAKEVIGKNCRFLQGP 90
Query: 296 DTDTTVLYQVSIAI 309
+TD + + ++ A+
Sbjct: 91 ETDRSEVEKLKQAL 104
>gi|224102759|ref|XP_002312790.1| predicted protein [Populus trichocarpa]
gi|222849198|gb|EEE86745.1| predicted protein [Populus trichocarpa]
Length = 923
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 103/339 (30%), Positives = 161/339 (47%), Gaps = 49/339 (14%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + +AL L +F ++D + PI++AS GF M+G+S EIIGRN R QG T
Sbjct: 131 RVSQELKDALATLQQTFVVSDATKPDCPIMYASGGFFTMTGYSSKEIIGRNCRFLQGADT 190
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPI 133
+R + +IR+A++ LLNYKK+GTPFW L ++ + K+D G A F+ +QV +
Sbjct: 191 DRNEVAKIRDAVKNGTSYCGRLLNYKKNGTPFWNLLTVTPI--KDDRGNAIKFIGMQVEV 248
Query: 134 ------VSRKHMRNSGMSYS--------EDGGGSRLREIVF-----GSCRREVCSDSLLD 174
V+ K R +G+ S + + E+V S R D+
Sbjct: 249 SKYTEGVNDKAFRPNGLPKSLIRYDARQKAKALDSITEVVQTLKHPKSPSRTASHDTSDH 308
Query: 175 LDRVLALDSDDTGLEIEDSCEASDLEKRKAATAID----------NILSVLTHYS--QLT 222
LD +L D + S++ + A +I+S + H +
Sbjct: 309 LDCLLPKSVDFDSFTLPSRLTPSNVSQSPTAKNSRKSPRIPLMGLSIISAVKHEEPPAIE 368
Query: 223 GRLVCGKRCSLPG------------MGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYAS 270
++ K L GF L +L I+ +FV+ DP LPD P+ +AS
Sbjct: 369 PEILMTKDIELSDGWDRAEWERDIRQGF---HLATTLENIENNFVITDPRLPDNPITFAS 425
Query: 271 DAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
D FL+LT Y R E++G+NCRFL G +TD + + ++ AI
Sbjct: 426 DGFLELTEYTREEILGRNCRFLQGPETDQSTVSKIRDAI 464
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 74/108 (68%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + ++F ITDP + +PI FAS GFL+++ ++R EI+GRN R QGP T++ T+ +IR
Sbjct: 402 LENIENNFVITDPRLPDNPITFASDGFLELTEYTREEILGRNCRFLQGPETDQSTVSKIR 461
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AIRE+R I V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 462 DAIREQREITVQLINYTKSGKKFWNLFHLQPMRDQK-GELQYFIGVQL 508
>gi|357472521|ref|XP_003606545.1| Phototropin [Medicago truncatula]
gi|355507600|gb|AES88742.1| Phototropin [Medicago truncatula]
Length = 940
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 98/364 (26%), Positives = 163/364 (44%), Gaps = 77/364 (21%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL +F ++D + +PI++AS GF M+G++ E+IGRN R QG T+ +
Sbjct: 155 LRDALSAFQQTFVVSDATKPDYPIMYASAGFFNMTGYTSKEVIGRNCRFMQGADTDPNDV 214
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI------ 133
+IRE++ LLNYKKDGTPFW L ++ + E+G+ + +QV +
Sbjct: 215 AKIRESLAAGTTYCGRLLNYKKDGTPFWNLLTIAPI-KDENGKILKLIGMQVEVSKHTEG 273
Query: 134 VSRKHMRNSGMSYS--------EDGGGSRLREIVFGSCRR-EVCSDS-----LLDLDRVL 179
K +R +G+ S ++ S + E+V RR S+S + +
Sbjct: 274 TKEKMLRPNGLPKSLIRYDARQKEKANSSVNELVEAVSRRPRSLSESANRPPFIKVPTKT 333
Query: 180 ALDSDDTGLEIEDSCEASDLEKRKAAT------------AIDNILSVLTHYSQLTGRLVC 227
SD E++ + S ++ +T D + + ++ +
Sbjct: 334 VHSSDHATQELQKTPSKSSRRRKSESTLPSFRRKSHSGGGGDTHFNSMHPITETPENKIN 393
Query: 228 GKRCSLPGMGFISSSL------------------------------------------YI 245
+R S MGFI SL
Sbjct: 394 SRRRSF--MGFIRKSLSNNESFNDEQLADDEDSSEDDERPDSVDEKIKKREKRKGLDLAT 451
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
+L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD + ++
Sbjct: 452 TLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVKKI 511
Query: 306 SIAI 309
AI
Sbjct: 512 RQAI 515
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+ T+ +IR
Sbjct: 453 LERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVKKIR 512
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AI + + V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 513 QAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GEVQYFIGVQL 559
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 47/76 (61%)
Query: 235 GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG 294
G+ +S L +L +Q+FV+ D PD P++YAS F +TGY EV+G+NCRF+ G
Sbjct: 147 GIPRVSEDLRDALSAFQQTFVVSDATKPDYPIMYASAGFFNMTGYTSKEVIGRNCRFMQG 206
Query: 295 VDTDTTVLYQVSIAIS 310
DTD + ++ +++
Sbjct: 207 ADTDPNDVAKIRESLA 222
>gi|73760086|dbj|BAE20161.1| phototropin [Mougeotia scalaris]
gi|73760096|dbj|BAE20166.1| phototropin [Mougeotia scalaris]
Length = 803
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 90/306 (29%), Positives = 151/306 (49%), Gaps = 25/306 (8%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ + L +F I+D + PIVFAS GF +M+G+ E+IG N R QG T+R +
Sbjct: 25 LKDVLTSFHQTFVISDATKPDIPIVFASEGFYEMTGYGPEEVIGYNCRFLQGEGTSRDEV 84
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
+++ + E +P LLNY+KDGTPFW L +S V G+ F+ +Q +
Sbjct: 85 TRLKQCLVEGQPFCGRLLNYRKDGTPFWNLLTVSPV-RSATGKVVKFIGMQTEVSKFTEG 143
Query: 140 RNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIEDSCEASDL 199
G+ D S +R + + +++ S+ ++ +A E+S
Sbjct: 144 AADGIKRPNDLPVSLIR---YDARQKDEAEVSVTEIVHAVAHPEKAIARLSTAVTESSKK 200
Query: 200 EKRKAAT-------------AIDNILSVLTHYSQLTGR---LVCGKRCSLPGMGFISSSL 243
++++ + I+ +V + GR + G++ G+ L
Sbjct: 201 HQQQSVSPEFGAEGLKTPLITINEKEAVDEVEVEEEGRDSFEITGEKKIRRGL-----DL 255
Query: 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLY 303
+L RI+++FV+ DP LP+ P+++ASD FL+LT Y R EV+G+NCRFL G DTD +
Sbjct: 256 ATTLERIQKNFVITDPRLPENPIIFASDDFLELTEYSREEVIGRNCRFLQGPDTDQDTVQ 315
Query: 304 QVSIAI 309
++ AI
Sbjct: 316 KIRDAI 321
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 80/132 (60%), Gaps = 1/132 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
L+ + +F ITDP + +PI+FAS FL+++ +SR E+IGRN R QGP T++ T+ +I
Sbjct: 258 TLERIQKNFVITDPRLPENPIIFASDDFLELTEYSREEVIGRNCRFLQGPDTDQDTVQKI 317
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R+AIR+ R + V LLNY K G PFW +F + V G +F+ VQ+ + +
Sbjct: 318 RDAIRDCRDVTVQLLNYTKSGKPFWNMFHLQAV-KNSKGELQYFIGVQLDASTYIEPKLQ 376
Query: 143 GMSYSEDGGGSR 154
+S S + G++
Sbjct: 377 PLSESAEKEGTK 388
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDT--- 297
S L L Q+FV+ D PD+P+V+AS+ F ++TGY EV+G NCRFL G T
Sbjct: 23 SELKDVLTSFHQTFVISDATKPDIPIVFASEGFYEMTGYGPEEVIGYNCRFLQGEGTSRD 82
Query: 298 DTTVLYQVSIAISPY 312
+ T L Q + P+
Sbjct: 83 EVTRLKQCLVEGQPF 97
>gi|55295936|dbj|BAD67804.1| putative phototropin [Oryza sativa Japonica Group]
gi|215767136|dbj|BAG99364.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 218
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/124 (58%), Positives = 89/124 (71%)
Query: 186 TGLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYI 245
G + E+ AS+ EK KA + ++I S L YS+LTG +VCGKRC G+ +SSSL +
Sbjct: 9 AGQDAEEPRVASEHEKEKALSTANSIFSALNRYSKLTGLVVCGKRCDSVGIPALSSSLNL 68
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
SLGRIKQSFVL DPHLPDMP++YASDAFL LTGY R E++G NCRFLNG T VL Q+
Sbjct: 69 SLGRIKQSFVLTDPHLPDMPIIYASDAFLSLTGYSREEILGCNCRFLNGPGTSVEVLEQI 128
Query: 306 SIAI 309
+ I
Sbjct: 129 NQHI 132
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 56/99 (56%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
+ SF +TDP + PI++AS FL ++G+SR EI+G N R GP T+ + +I + I
Sbjct: 73 IKQSFVLTDPHLPDMPIIYASDAFLSLTGYSREEILGCNCRFLNGPGTSVEVLEQINQHI 132
Query: 87 REERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATH 125
E+ V+LLNY+K G+ F L +S + A H
Sbjct: 133 CSEQACTVHLLNYRKGGSSFRDLLHISPIRNASGKVAFH 171
>gi|312282323|dbj|BAJ34027.1| unnamed protein product [Thellungiella halophila]
Length = 997
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/355 (26%), Positives = 161/355 (45%), Gaps = 75/355 (21%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL +F ++D + +PI++AS GF M+G++ E++GRN R QG T+ +
Sbjct: 187 LKDALSTFQQTFVVSDATKPDYPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDADEL 246
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI------ 133
+IRE + LLNYKKDGT FW L ++ + E G+ F+ +QV +
Sbjct: 247 AKIRETLAAGNNYCGRLLNYKKDGTSFWNLLTIAPI-KDESGKVLKFIGMQVEVSKHTEG 305
Query: 134 VSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDL----DRVLALDSDDTGLE 189
K +R +G+ S I + + ++++ ++S+ +L R AL
Sbjct: 306 AKEKTLRPNGLPES---------LIRYDARQKDIATNSVTELVEAVKRPRALSESTNQHP 356
Query: 190 IEDSCEASDLEKRKAATAIDNILS------------VLTHYSQLT-GRLVCGKRCSLPGM 236
+ E D + A +N++ + S++ + R S G+
Sbjct: 357 FKRKSETDDPPAKPARRMSENVVPSGRRNSGGGRRNSMQRISEVPEKKQTKSSRLSFMGI 416
Query: 237 GFISSSL------YISLG------------------------------------RIKQSF 254
S+SL +I G RI+++F
Sbjct: 417 KKKSASLDESIDGFIEYGEEDDEISDRDERPESVDDKVRQKEMRKGMDLATTLERIEKNF 476
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
V+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD T + ++ AI
Sbjct: 477 VITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPTTVKKIRAAI 531
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 68/109 (62%), Gaps = 1/109 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+ T+ +I
Sbjct: 468 TLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPTTVKKI 527
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
R AI + + V L+NY K G FW +F + + ++ G +F+ VQ+
Sbjct: 528 RAAIDNQTEVTVQLINYTKSGKKFWNIFHLQPMRDQK-GEVQYFIGVQL 575
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 226 VCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVV 285
V G R +P +S L +L +Q+FV+ D PD P++YAS F +TGY EVV
Sbjct: 173 VAGGRGGIPR---VSEDLKDALSTFQQTFVVSDATKPDYPIMYASAGFFNMTGYTSKEVV 229
Query: 286 GQNCRFLNGVDTDTTVLYQV 305
G+NCRFL G TD L ++
Sbjct: 230 GRNCRFLQGSGTDADELAKI 249
>gi|449525938|ref|XP_004169973.1| PREDICTED: phototropin-2-like [Cucumis sativus]
Length = 876
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 93/304 (30%), Positives = 143/304 (47%), Gaps = 29/304 (9%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L L ++ I+D + +PI+FAS FL M+G++ E+IGRN R QGP T++ + +IR
Sbjct: 122 LSSLQLTYVISDATKPDYPIMFASNRFLAMTGYTLDEVIGRNCRFLQGPETDKNEVAKIR 181
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143
AIR+ LLNYKK+GTPFW L + V GR F+ +QV I
Sbjct: 182 HAIRKGNSYCGKLLNYKKNGTPFWNLLTVGPV-KDSHGRIIRFIGMQVEIAKDIEGMKKS 240
Query: 144 MSYSEDGGGSRLREIVF-------------GSCRREVCSDSLLDLDRVLALD-----SDD 185
MS +E +R IV + + + D ALD +D+
Sbjct: 241 MSITEVQAERAIRSIVEVDIVKSLRSHWHDADTKHQEPEKTNADYASSKALDKNFTTADN 300
Query: 186 TGLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYI 245
++ S +E R+ T ++ L + G V + + + L
Sbjct: 301 QKARFKERTLGSAVE-REEKTVVETYL-----FKPKDGDHVAKRERDIRQ----GTELAT 350
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
+L RIK+ F + +P LPD P+++AS FL T Y EV+G+N FL G +TD + ++
Sbjct: 351 TLERIKKIFFITNPRLPDNPIIFASHRFLDSTEYTLEEVLGRNFCFLQGPETDQATVSKI 410
Query: 306 SIAI 309
+ AI
Sbjct: 411 NDAI 414
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 73/137 (53%), Gaps = 3/137 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
L+ + F IT+P + +PI+FAS FL + ++ E++GRN QGP T++ T+ +I
Sbjct: 351 TLERIKKIFFITNPRLPDNPIIFASHRFLDSTEYTLEEVLGRNFCFLQGPETDQATVSKI 410
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+AI E+R I + ++NY K G F LF + + + G +F+ VQ + +K RN
Sbjct: 411 NDAIEEQREITLQIINYTKSGKKFSNLFHLQPMCDQMKGELQYFIGVQ---IHQKPSRNR 467
Query: 143 GMSYSEDGGGSRLREIV 159
+E G + +
Sbjct: 468 LFDRTEHGSAKLAKAVA 484
>gi|449453764|ref|XP_004144626.1| PREDICTED: phototropin-2-like [Cucumis sativus]
Length = 943
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 93/304 (30%), Positives = 143/304 (47%), Gaps = 29/304 (9%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L L ++ I+D + +PI+FAS FL M+G++ E+IGRN R QGP T++ + +IR
Sbjct: 189 LSSLQLTYVISDATKPDYPIMFASNRFLAMTGYTLDEVIGRNCRFLQGPETDKNEVAKIR 248
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143
AIR+ LLNYKK+GTPFW L + V GR F+ +QV I
Sbjct: 249 HAIRKGNSYCGKLLNYKKNGTPFWNLLTVGPV-KDSHGRIIRFIGMQVEIAKDIEGMKKS 307
Query: 144 MSYSEDGGGSRLREIVF-------------GSCRREVCSDSLLDLDRVLALD-----SDD 185
MS +E +R IV + + + D ALD +D+
Sbjct: 308 MSITEVQAERAIRSIVEVDIVKSLRSHWHDADTKHQEPEKTNADYASSKALDKNFTTADN 367
Query: 186 TGLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYI 245
++ S +E R+ T ++ L + G V + + + L
Sbjct: 368 QKARFKERTLGSAVE-REEKTVVETYL-----FKPKDGDHVAKRERDIRQ----GTELAT 417
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
+L RIK+ F + +P LPD P+++AS FL T Y EV+G+N FL G +TD + ++
Sbjct: 418 TLERIKKIFFITNPRLPDNPIIFASHRFLDSTEYTLEEVLGRNFCFLQGPETDQATVSKI 477
Query: 306 SIAI 309
+ AI
Sbjct: 478 NDAI 481
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 73/137 (53%), Gaps = 3/137 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
L+ + F IT+P + +PI+FAS FL + ++ E++GRN QGP T++ T+ +I
Sbjct: 418 TLERIKKIFFITNPRLPDNPIIFASHRFLDSTEYTLEEVLGRNFCFLQGPETDQATVSKI 477
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+AI E+R I + ++NY K G F LF + + + G +F+ VQ + +K RN
Sbjct: 478 NDAIEEQREITLQIINYTKSGKKFSNLFHLQPMCDQMKGELQYFIGVQ---IHQKPSRNR 534
Query: 143 GMSYSEDGGGSRLREIV 159
+E G + +
Sbjct: 535 LFDRTEHGSAKLAKAVA 551
>gi|384246421|gb|EIE19911.1| hypothetical protein COCSUDRAFT_19032 [Coccomyxa subellipsoidea
C-169]
Length = 319
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 137/279 (49%), Gaps = 38/279 (13%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
F I+ PI+FAS F +++G++ E++G N R GP T+R+ +MEIR AI+EER
Sbjct: 14 FAISSARDPDMPIIFASPSFYELTGYTPEEVLGSNCRFLHGPDTSRQKVMEIRSAIQEER 73
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSEDG 150
+V + NYKK G FW F + +F ++ G +++ G
Sbjct: 74 AAQVCIKNYKKSGESFWNHFYLEPIF-EDAGVVEYYI----------------------G 110
Query: 151 GGSRLREIVFGSCRREVC----SDSLLDLDRVLALDSDDTGLEIEDSCEASDLE------ 200
S++R F + R +VC + + L + + +DD L + D +D+
Sbjct: 111 TSSKIR---FNA-RIQVCRGYAAATFLCAECLPVARADDVPLVLTDEPSCADVRIALTQN 166
Query: 201 -KRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDP 259
++ I L + + S+ G + + +SL L ++ QSFVL +P
Sbjct: 167 APMVGSSTICLTLLMCSIVSRSAGEGLVHHVSGPVAAPCVPTSLLQPLMKLAQSFVLANP 226
Query: 260 HLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
PD P+VYAS FL LTGY R++VVG+NCRFL G T+
Sbjct: 227 DEPDCPIVYASQRFLDLTGYPRDQVVGRNCRFLQGPGTN 265
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 54/86 (62%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+ L +L SF + +P PIV+AS+ FL ++G+ R +++GRN R QGP TN +
Sbjct: 212 QPLMKLAQSFVLANPDEPDCPIVYASQRFLDLTGYPRDQVVGRNCRFLQGPGTNPEDVQR 271
Query: 82 IREAIREERPIEVNLLNYKKDGTPFW 107
+R+ I P+ V LLNYK DGTPFW
Sbjct: 272 LRDGIAAGGPVTVKLLNYKYDGTPFW 297
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
++ F + PDMP+++AS +F +LTGY EV+G NCRFL+G DT + ++ AI
Sbjct: 10 LQVCFAISSARDPDMPIIFASPSFYELTGYTPEEVLGSNCRFLHGPDTSRQKVMEIRSAI 69
>gi|307109021|gb|EFN57260.1| hypothetical protein CHLNCDRAFT_6687, partial [Chlorella
variabilis]
Length = 730
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/300 (30%), Positives = 148/300 (49%), Gaps = 54/300 (18%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMF-QGPRTNRRTIME 81
AL +L +F + D + P+++AS GF M+G+S+ E++G+N F QGP T+ + + +
Sbjct: 11 ALAKLRQTFVVADATHPDCPLIYASEGFYHMTGYSQEELVGKNWYSFLQGPDTDPQAVRQ 70
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
+ EA+ RP+ + LL Y+K G FW + M+ + E G V VQV +
Sbjct: 71 LDEAVEAGRPLTLRLLCYRKSGKAFWNMLTMTPIHDDE-GNVVKIVGVQVDV-------- 121
Query: 142 SGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIEDSCEASDLEK 201
SR E C C+ L L + D+ L++
Sbjct: 122 -----------SRTTEGRAVQC----CAQGL-----PLLVHYDER------------LKE 149
Query: 202 RKAATAIDNILSVLT-HYSQLTGRLVCGKRC---SLPGMGFISSS--------LYISLGR 249
R A A + +++ ++ S+L+ G R S+ G G + L ++ R
Sbjct: 150 RVAWPATEEVMAAVSPRASRLSRASHHGPRSFSLSMGGAGGEEEACPHRAALDLATTIER 209
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
I+ +FV+ DP LPD P+V+ASD+FL+LTGY R +++G+NCRFL G TD + ++ AI
Sbjct: 210 IQTNFVISDPSLPDCPIVFASDSFLQLTGYAREDILGRNCRFLQGPGTDRATVNELRAAI 269
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 68/107 (63%)
Query: 9 EQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM 68
E++ +R L + ++ + +F I+DPS+ PIVFAS FL+++G++R +I+GRN R
Sbjct: 192 EEACPHRAALDLATTIERIQTNFVISDPSLPDCPIVFASDSFLQLTGYAREDILGRNCRF 251
Query: 69 FQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLV 115
QGP T+R T+ E+R AI R V +LNY K G PFW L ++ +
Sbjct: 252 LQGPGTDRATVNELRAAILAGRECTVRMLNYTKAGKPFWNLLTVAPI 298
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNC-RFLNGVDTDT 299
+ L +L +++Q+FV+ D PD P++YAS+ F +TGY + E+VG+N FL G DTD
Sbjct: 6 AQLTSALAKLRQTFVVADATHPDCPLIYASEGFYHMTGYSQEELVGKNWYSFLQGPDTDP 65
Query: 300 TVLYQVSIAI 309
+ Q+ A+
Sbjct: 66 QAVRQLDEAV 75
>gi|242051781|ref|XP_002455036.1| hypothetical protein SORBIDRAFT_03g003350 [Sorghum bicolor]
gi|241927011|gb|EES00156.1| hypothetical protein SORBIDRAFT_03g003350 [Sorghum bicolor]
Length = 213
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 68/123 (55%), Positives = 86/123 (69%)
Query: 184 DDTGLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSL 243
D GLE E+ ASD EK A + +NI+SVL YS+LTG +V +RCS G+ +SSSL
Sbjct: 2 DKRGLEAEELRVASDCEKEMATSMANNIVSVLNRYSKLTGLVVSSQRCSSVGIPALSSSL 61
Query: 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLY 303
+SLGRIKQSFVL D LPDMP++YASDAF LTGY R E++G NC+ LNG T VL
Sbjct: 62 NLSLGRIKQSFVLTDSRLPDMPIIYASDAFTSLTGYSREEILGCNCKVLNGPGTSLEVLE 121
Query: 304 QVS 306
+++
Sbjct: 122 EIN 124
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 53/87 (60%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
+ SF +TD + PI++AS F ++G+SR EI+G N ++ GP T+ + EI + I
Sbjct: 68 IKQSFVLTDSRLPDMPIIYASDAFTSLTGYSREEILGCNCKVLNGPGTSLEVLEEINQHI 127
Query: 87 REERPIEVNLLNYKKDGTPFWMLFKMS 113
E+ V+LL+Y+KDG+ F L +S
Sbjct: 128 CSEQACTVDLLSYRKDGSSFCDLLHVS 154
>gi|312195261|ref|YP_004015322.1| PAS/PAC sensor protein [Frankia sp. EuI1c]
gi|311226597|gb|ADP79452.1| putative PAS/PAC sensor protein [Frankia sp. EuI1c]
Length = 628
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 73/118 (61%), Gaps = 1/118 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL + SFTI DP P+++ + F + +G+ AE +GRN R QGPR++R T ++
Sbjct: 32 ALQSIDVSFTIADPHQPDTPLIWVNDAFTRTTGYPFAEAVGRNCRFLQGPRSDRATAAKL 91
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140
+A+RE RP V LLNY+KDG+ FW ++ VF + DGR THFV VQ + +R R
Sbjct: 92 GDAVRERRPARVELLNYRKDGSTFWNEIVLAPVFDR-DGRLTHFVGVQDDVTARVEAR 148
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
+L I SF + DPH PD P+++ +DAF + TGY E VG+NCRFL G +D ++
Sbjct: 32 ALQSIDVSFTIADPHQPDTPLIWVNDAFTRTTGYPFAEAVGRNCRFLQGPRSDRATAAKL 91
Query: 306 SIAI 309
A+
Sbjct: 92 GDAV 95
>gi|76800979|ref|YP_325987.1| bacterio-opsin activator [Natronomonas pharaonis DSM 2160]
gi|76556844|emb|CAI48418.1| receiver/sensor/bat box HTH-10 family transcription regulator Bat
(homolog to bacterioopsin activator) [Natronomonas
pharaonis DSM 2160]
Length = 681
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
LDE P + DP P+V+ + F +++G+ R E++GRN R QG TN + IR
Sbjct: 152 LDEAPVGVVVADPHEEDEPLVYINEAFERLTGYERHEVLGRNCRFLQGEDTNPEAVATIR 211
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
+A+ + RP+ V LLNY+KDG PFW ++ + +DGR TH V Q I RK +
Sbjct: 212 QAVDDRRPVSVELLNYRKDGEPFWNQLNIAPIR-DDDGRVTHLVGFQTDITERKEV 266
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 40/56 (71%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
V+ DPH D P+VY ++AF +LTGY+R+EV+G+NCRFL G DT+ + + A+
Sbjct: 159 VVVADPHEEDEPLVYINEAFERLTGYERHEVLGRNCRFLQGEDTNPEAVATIRQAV 214
>gi|168021149|ref|XP_001763104.1| PHOTA4 phototropin blue light photoreceptor [Physcomitrella patens
subsp. patens]
gi|162685587|gb|EDQ71981.1| PHOTA4 phototropin blue light photoreceptor [Physcomitrella patens
subsp. patens]
Length = 868
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 76/124 (61%), Gaps = 1/124 (0%)
Query: 8 IEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGR 67
+E+S R + + L+ +P +F ITDP + +PI+FAS FL+++ +SR EI+GRN R
Sbjct: 311 VERSKKTRRGIDLATTLERIPKNFVITDPRLPDNPIIFASDEFLELTEYSREEILGRNCR 370
Query: 68 MFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFV 127
QGP T+R + +IR+AI R I V LLNY K G PFW LF + +G +F+
Sbjct: 371 FLQGPDTDRAVVDQIRDAIAARRDITVQLLNYTKSGKPFWNLFHLQ-SMRDHNGELQYFI 429
Query: 128 AVQV 131
VQ+
Sbjct: 430 GVQL 433
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 78/140 (55%), Gaps = 9/140 (6%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + V +AL +F + D PI++AS GF M+G++ EIIGR+ R QGP T
Sbjct: 26 RVSREVRDALSTFQQTFVVCDAVQPDFPILYASAGFFTMTGYTPKEIIGRSCRFLQGPET 85
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPI 133
++ I IREA+++ + LLNYKKD + FW L M+ + K+D G+ ++ +QV +
Sbjct: 86 DKADIASIREALQQGKNFCGRLLNYKKDRSAFWNLLTMTPI--KDDAGKVLKYIGMQVEV 143
Query: 134 ------VSRKHMRNSGMSYS 147
+ K +R +G+ S
Sbjct: 144 SKHTDGLKEKALRPNGLPES 163
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 50/68 (73%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI ++FV+ DP LPD P+++ASD FL+LT Y R E++G+NCRFL G DTD V+
Sbjct: 323 LATTLERIPKNFVITDPRLPDNPIIFASDEFLELTEYSREEILGRNCRFLQGPDTDRAVV 382
Query: 303 YQVSIAIS 310
Q+ AI+
Sbjct: 383 DQIRDAIA 390
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 43/71 (60%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S + +L +Q+FV+ D PD P++YAS F +TGY E++G++CRFL G +TD
Sbjct: 27 VSREVRDALSTFQQTFVVCDAVQPDFPILYASAGFFTMTGYTPKEIIGRSCRFLQGPETD 86
Query: 299 TTVLYQVSIAI 309
+ + A+
Sbjct: 87 KADIASIREAL 97
>gi|448278451|gb|AGE44112.1| miniSOG [synthetic construct]
Length = 106
Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats.
Identities = 48/105 (45%), Positives = 71/105 (67%), Gaps = 1/105 (0%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
+ SF ITDP + +PI+FAS GFL+++ +SR EI+GRNGR QGP T++ T+ +IR+AI
Sbjct: 1 MEKSFVITDPRLPDNPIIFASDGFLELTEYSREEILGRNGRFLQGPETDQATVQKIRDAI 60
Query: 87 REERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
R++R I V L+NY K G FW L + + + G +F+ VQ+
Sbjct: 61 RDQREITVQLINYTKSGKKFWNLLHLQPM-RDQKGELQYFIGVQL 104
Score = 68.6 bits (166), Expect = 4e-09, Method: Composition-based stats.
Identities = 29/60 (48%), Positives = 44/60 (73%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+++SFV+ DP LPD P+++ASD FL+LT Y R E++G+N RFL G +TD + ++ AI
Sbjct: 1 MEKSFVITDPRLPDNPIIFASDGFLELTEYSREEILGRNGRFLQGPETDQATVQKIRDAI 60
>gi|197257792|gb|ACH56106.1| phototropin [synthetic construct]
Length = 139
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 77/130 (59%), Gaps = 5/130 (3%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + SF ITDPS+ HPIVFAS GF++ +G+S EI+GRN R QGP+T+R + +IR
Sbjct: 9 LERIEQSFVITDPSLPDHPIVFASDGFMEFTGYSVDEILGRNCRFLQGPKTDRAAVAKIR 68
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR----KHM 139
EAI V LLNY K G FW +F ++ V E G F VQV I + +H
Sbjct: 69 EAIENGEECTVRLLNYTKTGEEFWNMFTLAPV-RDEQGIVRFFAGVQVDITAHDPQTEHE 127
Query: 140 RNSGMSYSED 149
+ +++ E+
Sbjct: 128 TVAEITFKEE 137
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 48/68 (70%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+QSFV+ DP LPD P+V+ASD F++ TGY +E++G+NCRFL G TD +
Sbjct: 5 LASTLERIEQSFVITDPSLPDHPIVFASDGFMEFTGYSVDEILGRNCRFLQGPKTDRAAV 64
Query: 303 YQVSIAIS 310
++ AI
Sbjct: 65 AKIREAIE 72
>gi|356559155|ref|XP_003547866.1| PREDICTED: phototropin-2-like [Glycine max]
Length = 990
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 88/155 (56%), Gaps = 9/155 (5%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + EAL L +F ++D + PI++AS GF M+G+S EIIGRN R QGP T
Sbjct: 179 RVSQELKEALATLQQTFVVSDATKPDCPIMYASSGFFTMTGYSSKEIIGRNCRFLQGPET 238
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPI 133
++ + +IR+A R R LLNYKKDGTPFW L ++ + K+D G F+ +QV +
Sbjct: 239 DKNEVAKIRDATRNGRSYCGRLLNYKKDGTPFWNLLTITPI--KDDHGNTIKFIGMQVEV 296
Query: 134 ------VSRKHMRNSGMSYSEDGGGSRLREIVFGS 162
V+ K +R +G+ S +R +E GS
Sbjct: 297 SKYTEGVNEKALRPNGLPKSLIRYDARQKEKALGS 331
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 72/109 (66%), Gaps = 1/109 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
L+ + +F I+DP + +PI+FAS FL+++ ++R EI+GRN R QGP T++ T+ I
Sbjct: 461 TLERIEKNFVISDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQATVSRI 520
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
R+AIRE+R I V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 521 RDAIREQREITVQLINYTKSGKKFWNLFHLQPMRDQK-GELQYFIGVQL 568
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 50/67 (74%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 458 LATTLERIEKNFVISDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQATV 517
Query: 303 YQVSIAI 309
++ AI
Sbjct: 518 SRIRDAI 524
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 44/70 (62%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L ++Q+FV+ D PD P++YAS F +TGY E++G+NCRFL G +TD
Sbjct: 180 VSQELKEALATLQQTFVVSDATKPDCPIMYASSGFFTMTGYSSKEIIGRNCRFLQGPETD 239
Query: 299 TTVLYQVSIA 308
+ ++ A
Sbjct: 240 KNEVAKIRDA 249
>gi|449475890|ref|XP_004154580.1| PREDICTED: phototropin-2-like [Cucumis sativus]
Length = 629
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 72/109 (66%), Gaps = 1/109 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
L+ + +F ITDP + +PI+FAS FL+++ ++R EI+GRN R QGP T++ T+ +I
Sbjct: 392 TLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQETVSKI 451
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
R+AIRE+R I V L+NY K G FW LF + + E G +F+ VQ+
Sbjct: 452 RDAIREQREITVQLINYTKTGKKFWNLFHLQPMR-DETGELQYFIGVQL 499
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 81/139 (58%), Gaps = 7/139 (5%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + +AL L +F ++D + PIV+AS GF M+G++ E+IGRN R QG T
Sbjct: 112 RVSQELKDALASLEQTFVVSDATKPDCPIVYASSGFFGMTGYASEEVIGRNCRFLQGSET 171
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI- 133
+++ + +IR A++ + LLNYKK+GTPFW L ++ + ++G F+ +QV +
Sbjct: 172 DQKEVDKIRYAVKNGKSYCGRLLNYKKNGTPFWNLLTVTPI-KDDNGNTIKFIGMQVEVS 230
Query: 134 -----VSRKHMRNSGMSYS 147
++ K +R +G+ S
Sbjct: 231 KYTEGINDKALRPNGLPKS 249
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 50/67 (74%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 389 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQETV 448
Query: 303 YQVSIAI 309
++ AI
Sbjct: 449 SKIRDAI 455
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 45/71 (63%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L ++Q+FV+ D PD P+VYAS F +TGY EV+G+NCRFL G +TD
Sbjct: 113 VSQELKDALASLEQTFVVSDATKPDCPIVYASSGFFGMTGYASEEVIGRNCRFLQGSETD 172
Query: 299 TTVLYQVSIAI 309
+ ++ A+
Sbjct: 173 QKEVDKIRYAV 183
>gi|449444602|ref|XP_004140063.1| PREDICTED: phototropin-2-like [Cucumis sativus]
Length = 921
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 72/109 (66%), Gaps = 1/109 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
L+ + +F ITDP + +PI+FAS FL+++ ++R EI+GRN R QGP T++ T+ +I
Sbjct: 392 TLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQETVSKI 451
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
R+AIRE+R I V L+NY K G FW LF + + E G +F+ VQ+
Sbjct: 452 RDAIREQREITVQLINYTKTGKKFWNLFHLQPM-RDETGELQYFIGVQL 499
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 81/139 (58%), Gaps = 7/139 (5%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + +AL L +F ++D + PIV+AS GF M+G++ E+IGRN R QG T
Sbjct: 112 RVSQELKDALASLEQTFVVSDATKPDCPIVYASSGFFGMTGYASEEVIGRNCRFLQGSET 171
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI- 133
+++ + +IR A++ + LLNYKK+GTPFW L ++ + ++G F+ +QV +
Sbjct: 172 DQKEVDKIRYAVKNGKSYCGRLLNYKKNGTPFWNLLTVTPI-KDDNGNTIKFIGMQVEVS 230
Query: 134 -----VSRKHMRNSGMSYS 147
++ K +R +G+ S
Sbjct: 231 KYTEGINDKALRPNGLPKS 249
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 50/67 (74%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 389 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQETV 448
Query: 303 YQVSIAI 309
++ AI
Sbjct: 449 SKIRDAI 455
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 45/71 (63%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L ++Q+FV+ D PD P+VYAS F +TGY EV+G+NCRFL G +TD
Sbjct: 113 VSQELKDALASLEQTFVVSDATKPDCPIVYASSGFFGMTGYASEEVIGRNCRFLQGSETD 172
Query: 299 TTVLYQVSIAI 309
+ ++ A+
Sbjct: 173 QKEVDKIRYAV 183
>gi|168043568|ref|XP_001774256.1| PHOTA1 phototropin A1 blue light photoreceptor [Physcomitrella
patens subsp. patens]
gi|50510311|dbj|BAD32622.1| phototropin [Physcomitrella patens]
gi|162674383|gb|EDQ60892.1| PHOTA1 phototropin A1 blue light photoreceptor [Physcomitrella
patens subsp. patens]
Length = 1070
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 70/108 (64%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ ++R EI+GRN R QGP T++ T+ +IR
Sbjct: 525 LERIEKNFVITDPRLPDNPIIFASDEFLELTEYTREEILGRNCRFLQGPDTDQNTVQKIR 584
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AI+E R I V LLNY K G PFW LF + G +F+ VQ+
Sbjct: 585 DAIKENRDITVQLLNYTKSGKPFWNLFHLQ-AMRDHKGELQYFIGVQM 631
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 65/112 (58%), Gaps = 1/112 (0%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+AL +F ++D + PIV+AS GF MSG+S EIIG N R QGP T+ + +
Sbjct: 243 DALSSFKQTFVVSDATKPDCPIVYASAGFFTMSGYSAKEIIGHNCRFLQGPDTDPADVEK 302
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
IR A++ + LLNY+KDG+ FW L ++ + E+ + F+ +QV +
Sbjct: 303 IRHAVKNGKNFCGRLLNYRKDGSTFWNLLTITPI-KDENDKVVKFIGMQVEV 353
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 49/67 (73%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD FL+LT Y R E++G+NCRFL G DTD +
Sbjct: 521 LATTLERIEKNFVITDPRLPDNPIIFASDEFLELTEYTREEILGRNCRFLQGPDTDQNTV 580
Query: 303 YQVSIAI 309
++ AI
Sbjct: 581 QKIRDAI 587
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 43/71 (60%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L KQ+FV+ D PD P+VYAS F ++GY E++G NCRFL G DTD
Sbjct: 237 VSEELLDALSSFKQTFVVSDATKPDCPIVYASAGFFTMSGYSAKEIIGHNCRFLQGPDTD 296
Query: 299 TTVLYQVSIAI 309
+ ++ A+
Sbjct: 297 PADVEKIRHAV 307
>gi|448607640|ref|ZP_21659593.1| HTR-like protein [Haloferax sulfurifontis ATCC BAA-897]
gi|445737577|gb|ELZ89109.1| HTR-like protein [Haloferax sulfurifontis ATCC BAA-897]
Length = 640
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 69/115 (60%), Gaps = 1/115 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P +TDP + +PIV+A+ F ++G+ E++GRN R QG RT+ + E+
Sbjct: 163 AMDEAPVGIVLTDPHAADNPIVYANEQFADLTGYRIEEVMGRNCRFLQGERTDEAAVAEL 222
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
R A+ E RP+ LLNY+KDGT FW +++ +F +DG FV Q I RK
Sbjct: 223 RSAVEERRPVTTELLNYRKDGTEFWNRVRVAPIF-DDDGAVEFFVGFQDDITPRK 276
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 43/82 (52%), Gaps = 10/82 (12%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISP-- 311
VL DPH D P+VYA++ F LTGY EV+G+NCRFL G TD + ++ A+
Sbjct: 171 IVLTDPHAADNPIVYANEQFADLTGYRIEEVMGRNCRFLQGERTDEAAVAELRSAVEERR 230
Query: 312 --------YPKKKSIYMEYVRV 325
Y K + + VRV
Sbjct: 231 PVTTELLNYRKDGTEFWNRVRV 252
>gi|448352551|ref|ZP_21541334.1| HTR-like protein [Natrialba hulunbeirensis JCM 10989]
gi|445642613|gb|ELY95680.1| HTR-like protein [Natrialba hulunbeirensis JCM 10989]
Length = 736
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 73/118 (61%), Gaps = 1/118 (0%)
Query: 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRT 78
W +A+DE I DP+ + PI + ++ F +++G+ R +++GRN R QGP T T
Sbjct: 387 WKTKAMDEASMGIVIADPTEADTPITYVNKEFCELTGYDREDVLGRNCRFLQGPLTAEST 446
Query: 79 IMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+ +RE I P++V++LNY++DGTPFW +++ VF +DG ++FV Q + +R
Sbjct: 447 VETVREGIANAEPVDVDILNYRRDGTPFWNNLQITPVF-DDDGSVSYFVGFQTDVTAR 503
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 28/41 (68%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG 294
V+ DP D P+ Y + F +LTGYDR +V+G+NCRFL G
Sbjct: 399 IVIADPTEADTPITYVNKEFCELTGYDREDVLGRNCRFLQG 439
>gi|389693838|ref|ZP_10181932.1| PAS domain S-box [Microvirga sp. WSM3557]
gi|388587224|gb|EIM27517.1| PAS domain S-box [Microvirga sp. WSM3557]
Length = 586
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 70/105 (66%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP++ +PI FA+R F ++G++ E++GRN R QG T++ + E+R A+RE+R I
Sbjct: 80 LTDPNLPDNPIAFANRAFQDLTGYTEEEVLGRNCRFLQGALTDKEAVAELRNAVREQRAI 139
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
V LLNYK+DGTPFW + VF K DG+ +F A Q+ + R+
Sbjct: 140 SVELLNYKRDGTPFWNACFIGPVFDK-DGKLLYFFASQLDVTRRR 183
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 56/94 (59%), Gaps = 3/94 (3%)
Query: 230 RCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNC 289
R S PG+ S+ + ++ + +L DP+LPD P+ +A+ AF LTGY EV+G+NC
Sbjct: 54 RISEPGLDDRSNVFFAAIEMTRMPMILTDPNLPDNPIAFANRAFQDLTGYTEEEVLGRNC 113
Query: 290 RFLNGVDTDTTVLYQVSIAISPYPKKKSIYMEYV 323
RFL G TD + ++ A+ ++++I +E +
Sbjct: 114 RFLQGALTDKEAVAELRNAVR---EQRAISVELL 144
>gi|224132474|ref|XP_002328288.1| predicted protein [Populus trichocarpa]
gi|222837803|gb|EEE76168.1| predicted protein [Populus trichocarpa]
Length = 495
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 73/108 (67%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ ++R EI+GRN R QGP T++ T+ ++R
Sbjct: 343 LERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQATVSKVR 402
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AIRE+R I V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 403 DAIREQREITVQLINYTKSGKKFWNLFHLQPMRDQK-GELQYFIGVQL 449
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 81/140 (57%), Gaps = 9/140 (6%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + AL L +F ++D + +PI+FAS GF M+G+S E+IGRN R QG T
Sbjct: 64 RVSQELKNALATLQQTFVVSDATKPDYPIMFASSGFFTMTGYSSKEVIGRNCRFLQGAGT 123
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPI 133
++ + +IR+A++ LLNYKK+GTPFW L ++ + K+D G F+ +QV +
Sbjct: 124 DQNEVAKIRDAVKNGTSYCGRLLNYKKNGTPFWNLLTVTPI--KDDRGNTIKFIGMQVEV 181
Query: 134 ------VSRKHMRNSGMSYS 147
V+ K +R +G+ S
Sbjct: 182 SKYTEGVNDKALRPNGLPKS 201
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 50/67 (74%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 339 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQATV 398
Query: 303 YQVSIAI 309
+V AI
Sbjct: 399 SKVRDAI 405
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 44/71 (61%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L ++Q+FV+ D PD P+++AS F +TGY EV+G+NCRFL G TD
Sbjct: 65 VSQELKNALATLQQTFVVSDATKPDYPIMFASSGFFTMTGYSSKEVIGRNCRFLQGAGTD 124
Query: 299 TTVLYQVSIAI 309
+ ++ A+
Sbjct: 125 QNEVAKIRDAV 135
>gi|75337608|sp|Q9ST27.1|PHOT2_ORYSJ RecName: Full=Phototropin-2; AltName: Full=Non-phototropic
hypocotyl protein 1B; Short=OsNPH1B
gi|6006310|dbj|BAA84779.1| nonphototrophic hypocotyl 1b [Oryza sativa Japonica Group]
gi|38344593|emb|CAD40495.2| OSJNBa0079M09.13 [Oryza sativa Japonica Group]
gi|116308943|emb|CAH66070.1| OSIGBa0092O07.5 [Oryza sativa Indica Group]
Length = 907
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 73/108 (67%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP I +PI+FAS FL+++ ++R EI+GRN R QGP T++ T+ +IR
Sbjct: 383 LERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQGTVDKIR 442
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
EAIRE++ I V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 443 EAIREQKEITVQLINYTKSGKKFWNLFHLQPMRDQK-GELQYFIGVQL 489
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 80/139 (57%), Gaps = 7/139 (5%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + +AL L +F ++D + PI++AS GF M+G+S E++GRN R QGP T
Sbjct: 88 RVSQELKDALSSLQQTFVVSDATRPDCPIIYASEGFFTMTGYSPREVVGRNCRFLQGPDT 147
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI- 133
+ + +IR+A++ R LLNY+KDG PFW L ++ + ++G+ F+ +QV +
Sbjct: 148 DAAEVAKIRDAVKHGRSFCGRLLNYRKDGAPFWNLLTVTPI-RDDNGKVIKFIGMQVEVS 206
Query: 134 -----VSRKHMRNSGMSYS 147
+S K MR + + S
Sbjct: 207 KYTEGLSDKRMRPNELPVS 225
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 50/67 (74%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP +PD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 379 LATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQGTV 438
Query: 303 YQVSIAI 309
++ AI
Sbjct: 439 DKIREAI 445
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 49/80 (61%)
Query: 230 RCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNC 289
R S + +S L +L ++Q+FV+ D PD P++YAS+ F +TGY EVVG+NC
Sbjct: 80 RASHDSLPRVSQELKDALSSLQQTFVVSDATRPDCPIIYASEGFFTMTGYSPREVVGRNC 139
Query: 290 RFLNGVDTDTTVLYQVSIAI 309
RFL G DTD + ++ A+
Sbjct: 140 RFLQGPDTDAAEVAKIRDAV 159
>gi|222628578|gb|EEE60710.1| hypothetical protein OsJ_14207 [Oryza sativa Japonica Group]
Length = 888
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 73/108 (67%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP I +PI+FAS FL+++ ++R EI+GRN R QGP T++ T+ +IR
Sbjct: 364 LERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQGTVDKIR 423
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
EAIRE++ I V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 424 EAIREQKEITVQLINYTKSGKKFWNLFHLQPMRDQK-GELQYFIGVQL 470
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 80/139 (57%), Gaps = 7/139 (5%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + +AL L +F ++D + PI++AS GF M+G+S E++GRN R QGP T
Sbjct: 88 RVSQELKDALSSLQQTFVVSDATRPDCPIIYASEGFFTMTGYSPREVVGRNCRFLQGPDT 147
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI- 133
+ + +IR+A++ R LLNY+KDG PFW L ++ + ++G+ F+ +QV +
Sbjct: 148 DAAEVAKIRDAVKHGRSFCGRLLNYRKDGAPFWNLLTVTPI-RDDNGKVIKFIGMQVEVS 206
Query: 134 -----VSRKHMRNSGMSYS 147
+S K MR + + S
Sbjct: 207 KYTEGLSDKRMRPNELPVS 225
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 50/67 (74%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP +PD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 360 LATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQGTV 419
Query: 303 YQVSIAI 309
++ AI
Sbjct: 420 DKIREAI 426
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 49/80 (61%)
Query: 230 RCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNC 289
R S + +S L +L ++Q+FV+ D PD P++YAS+ F +TGY EVVG+NC
Sbjct: 80 RASHDSLPRVSQELKDALSSLQQTFVVSDATRPDCPIIYASEGFFTMTGYSPREVVGRNC 139
Query: 290 RFLNGVDTDTTVLYQVSIAI 309
RFL G DTD + ++ A+
Sbjct: 140 RFLQGPDTDAAEVAKIRDAV 159
>gi|115457630|ref|NP_001052415.1| Os04g0304200 [Oryza sativa Japonica Group]
gi|113563986|dbj|BAF14329.1| Os04g0304200, partial [Oryza sativa Japonica Group]
Length = 771
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 73/109 (66%), Gaps = 1/109 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
L+ + +F ITDP I +PI+FAS FL+++ ++R EI+GRN R QGP T++ T+ +I
Sbjct: 246 TLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQGTVDKI 305
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
REAIRE++ I V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 306 REAIREQKEITVQLINYTKSGKKFWNLFHLQPMRDQK-GELQYFIGVQL 353
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 50/67 (74%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP +PD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 243 LATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQGTV 302
Query: 303 YQVSIAI 309
++ AI
Sbjct: 303 DKIREAI 309
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 7/87 (8%)
Query: 67 RMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHF 126
R QGP T+ + +IR+A++ R LLNY+KDG PFW L ++ + ++G+ F
Sbjct: 4 RFLQGPDTDAAEVAKIRDAVKHGRSFCGRLLNYRKDGAPFWNLLTVTPI-RDDNGKVIKF 62
Query: 127 VAVQVPI------VSRKHMRNSGMSYS 147
+ +QV + +S K MR + + S
Sbjct: 63 IGMQVEVSKYTEGLSDKRMRPNELPVS 89
>gi|218194566|gb|EEC76993.1| hypothetical protein OsI_15306 [Oryza sativa Indica Group]
Length = 1015
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 73/108 (67%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP I +PI+FAS FL+++ ++R EI+GRN R QGP T++ T+ +IR
Sbjct: 383 LERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQGTVDKIR 442
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
EAIRE++ I V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 443 EAIREQKEITVQLINYTKSGKKFWNLFHLQPMRDQK-GELQYFIGVQL 489
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 84/153 (54%), Gaps = 7/153 (4%)
Query: 1 MDSQLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAE 60
+D +G R + + +AL L +F ++D + PI++AS GF M+G+S E
Sbjct: 74 VDGGVGRASHDSLPRVSQELKDALSSLQQTFVVSDATRPDCPIIYASEGFFTMTGYSPRE 133
Query: 61 IIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED 120
++GRN R QGP T+ + +IR+A++ R LLNY+KDG PFW L ++ + ++
Sbjct: 134 VVGRNCRFLQGPDTDAAEVAKIRDAVKHGRSFCGRLLNYRKDGAPFWNLLTVTPI-RDDN 192
Query: 121 GRATHFVAVQVPI------VSRKHMRNSGMSYS 147
G+ F+ +QV + +S K MR + + S
Sbjct: 193 GKVIKFIGMQVEVSKYTEGLSDKRMRPNELPVS 225
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 50/67 (74%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP +PD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 379 LATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQGTV 438
Query: 303 YQVSIAI 309
++ AI
Sbjct: 439 DKIREAI 445
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 49/80 (61%)
Query: 230 RCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNC 289
R S + +S L +L ++Q+FV+ D PD P++YAS+ F +TGY EVVG+NC
Sbjct: 80 RASHDSLPRVSQELKDALSSLQQTFVVSDATRPDCPIIYASEGFFTMTGYSPREVVGRNC 139
Query: 290 RFLNGVDTDTTVLYQVSIAI 309
RFL G DTD + ++ A+
Sbjct: 140 RFLQGPDTDAAEVAKIRDAV 159
>gi|448620191|ref|ZP_21667539.1| HTR-like protein [Haloferax denitrificans ATCC 35960]
gi|445756979|gb|EMA08335.1| HTR-like protein [Haloferax denitrificans ATCC 35960]
Length = 639
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 70/115 (60%), Gaps = 1/115 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P +TDP + +PIV+A+ F +++G+ R E +GRN R QG T+ +I E+
Sbjct: 162 AMDEAPVGIVLTDPHAADNPIVYANEQFTELTGYGRDEALGRNCRFLQGEATDEASIAEL 221
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
REA+ + P+ LLNY+KDGT FW +++ +F +DG FV Q I RK
Sbjct: 222 REAVEDREPVTTELLNYRKDGTEFWNRVRVAPIF-DDDGGIDFFVGFQDDITPRK 275
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 38/56 (67%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
VL DPH D P+VYA++ F +LTGY R+E +G+NCRFL G TD + ++ A+
Sbjct: 170 IVLTDPHAADNPIVYANEQFTELTGYGRDEALGRNCRFLQGEATDEASIAELREAV 225
>gi|356526675|ref|XP_003531942.1| PREDICTED: phototropin-2-like [Glycine max]
Length = 996
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 88/155 (56%), Gaps = 9/155 (5%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + EAL L +F ++D + PI++AS GF M+G+S EIIGRN R QGP T
Sbjct: 184 RVSQELKEALATLQQTFVVSDATKPDCPIMYASSGFFTMTGYSSKEIIGRNCRFLQGPET 243
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPI 133
++ + +IR+A R R LLNYKKDGTPFW L ++ + K+D G F+ +QV +
Sbjct: 244 DKNEVAKIRDATRNGRSYCGRLLNYKKDGTPFWNLLTVTPI--KDDHGNTIKFIGMQVEV 301
Query: 134 ------VSRKHMRNSGMSYSEDGGGSRLREIVFGS 162
++ K +R +G+ S +R +E GS
Sbjct: 302 SKYTEGMNEKALRPNGLPKSLIRYDARQKEKALGS 336
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 72/109 (66%), Gaps = 1/109 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
L+ + +F I+DP + +PI+FAS FL+++ ++R EI+GRN R QGP T++ T+ I
Sbjct: 467 TLERIEKNFVISDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQATVSRI 526
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
R+AIRE+R I V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 527 RDAIREQREITVQLINYTKSGKKFWNLFHLQPMRDQK-GELQYFIGVQL 574
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 50/67 (74%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 464 LATTLERIEKNFVISDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQATV 523
Query: 303 YQVSIAI 309
++ AI
Sbjct: 524 SRIRDAI 530
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 87/214 (40%), Gaps = 19/214 (8%)
Query: 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSEDGGGSR 154
N N K+ WM F F + AT + SR H++ S G +
Sbjct: 60 NSANNSKEPVNKWMAFAKKPGFTVDGNSATKDKSTTEDNYSRNHLKEKPSS-----GQNF 114
Query: 155 LREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIEDSCEASDLEKRKAATAIDNILSV 214
L E R +D AL ++T D ++ +L R
Sbjct: 115 LSEATI--AERTAEWGLAVDSGNFKALGGENTSGGSFDGDKSRNLSDR------------ 160
Query: 215 LTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFL 274
++ +G G SL +S L +L ++Q+FV+ D PD P++YAS F
Sbjct: 161 FVESTRTSGESNYGSESSLGVFPRVSQELKEALATLQQTFVVSDATKPDCPIMYASSGFF 220
Query: 275 KLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIA 308
+TGY E++G+NCRFL G +TD + ++ A
Sbjct: 221 TMTGYSSKEIIGRNCRFLQGPETDKNEVAKIRDA 254
>gi|350537331|ref|NP_001234289.1| phototropin-2 [Solanum lycopersicum]
gi|154000865|gb|ABS57001.1| phototropin-2 [Solanum lycopersicum]
Length = 952
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 73/108 (67%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ F+R EI+GRN R QGP T++ T+ +IR
Sbjct: 427 LERIEKNFVITDPRLPDNPIIFASDSFLELTEFTREEILGRNCRFLQGPETDQATVQKIR 486
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AI+E++ I V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 487 DAIKEQKEITVQLINYTKSGKKFWNLFHLQPMRDQK-GELQYFIGVQL 533
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 87/150 (58%), Gaps = 9/150 (6%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL L +F ++D + PIV+AS GF M+G+S EI+GRN R QG T++ +
Sbjct: 148 LKDALATLQQTFVVSDATKPDCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGKDTDQNEV 207
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPI----- 133
+IR+A++ + LLNYKK+GTPFW L ++ + K+D G+ F+ +QV +
Sbjct: 208 AKIRDAVKTGKSYCGRLLNYKKNGTPFWNLLTVTPI--KDDSGKTIKFIGMQVEVSKYTE 265
Query: 134 -VSRKHMRNSGMSYSEDGGGSRLREIVFGS 162
V+ K +R +G+ S +R +E GS
Sbjct: 266 GVNEKELRPNGLPKSLIRYDARQKEKALGS 295
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 57/81 (70%), Gaps = 3/81 (3%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT + R E++G+NCRFL G +TD +
Sbjct: 423 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEFTREEILGRNCRFLQGPETDQATV 482
Query: 303 YQVSIAISPYPKKKSIYMEYV 323
++ AI ++K I ++ +
Sbjct: 483 QKIRDAIK---EQKEITVQLI 500
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 45/71 (63%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L ++Q+FV+ D PD P+VYAS F +TGY E+VG+NCRFL G DTD
Sbjct: 144 VSQDLKDALATLQQTFVVSDATKPDCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGKDTD 203
Query: 299 TTVLYQVSIAI 309
+ ++ A+
Sbjct: 204 QNEVAKIRDAV 214
>gi|401782494|dbj|BAM36550.1| phototropin 2 [Fragaria x ananassa]
Length = 944
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 72/108 (66%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F I+DP I +PI+FAS FL+++ ++R EI+GRN R QGP T++ T+ +IR
Sbjct: 415 LERIEKNFVISDPRIPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQATVQKIR 474
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AIRE+R I V L+NY K G FW LF + + + G +F+ VQ+
Sbjct: 475 DAIREQREITVQLINYTKSGKKFWNLFHLQPMRDHK-GELQYFIGVQL 521
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 88/161 (54%), Gaps = 9/161 (5%)
Query: 9 EQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM 68
+Q N R + + AL L +F ++D + PI++ S GF M+G+S E+IGRN R
Sbjct: 133 DQVPNPRVSSELKTALATLQQTFVVSDATKPDCPIMYTSSGFFTMTGYSSKEVIGRNCRF 192
Query: 69 FQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFV 127
QGP T++ + +IR A++ L NYKKDGTPFW L ++ + K+D G+ F+
Sbjct: 193 LQGPETDQNEVSKIRNAVKTGSSYCGRLYNYKKDGTPFWNLLTVTPI--KDDTGKTIKFI 250
Query: 128 AVQVPI------VSRKHMRNSGMSYSEDGGGSRLREIVFGS 162
+QV + V+ K +R +G+ S +R +E GS
Sbjct: 251 GMQVEVSKFTEGVNEKALRPNGLPKSLIRYDARQKEKALGS 291
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 50/67 (74%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP +PD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 411 LATTLERIEKNFVISDPRIPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQATV 470
Query: 303 YQVSIAI 309
++ AI
Sbjct: 471 QKIRDAI 477
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 45/71 (63%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+SS L +L ++Q+FV+ D PD P++Y S F +TGY EV+G+NCRFL G +TD
Sbjct: 140 VSSELKTALATLQQTFVVSDATKPDCPIMYTSSGFFTMTGYSSKEVIGRNCRFLQGPETD 199
Query: 299 TTVLYQVSIAI 309
+ ++ A+
Sbjct: 200 QNEVSKIRNAV 210
>gi|113911589|gb|ABI48276.1| phototropin-2 [Solanum lycopersicum]
Length = 952
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 73/108 (67%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ F+R EI+GRN R QGP T++ T+ +IR
Sbjct: 427 LERIEKNFVITDPRLPDNPIIFASDSFLELTEFTREEILGRNCRFLQGPETDQATVQKIR 486
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AI+E++ I V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 487 DAIKEQKEITVQLINYTKSGKKFWNLFHLQPMRDQK-GELQYFIGVQL 533
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 87/150 (58%), Gaps = 9/150 (6%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL L +F ++D + PIV+AS GF M+G+S EI+GRN R QG T++ +
Sbjct: 148 LKDALATLQQTFVVSDATKPDCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGKDTDQNEV 207
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPI----- 133
+IR+A++ + LLNYKK+GTPFW L ++ + K+D G+ F+ +QV +
Sbjct: 208 AKIRDAVKTGKSYCGRLLNYKKNGTPFWNLLTVTPI--KDDSGKTIKFIGMQVEVSKYTE 265
Query: 134 -VSRKHMRNSGMSYSEDGGGSRLREIVFGS 162
V+ K +R +G+ S +R +E GS
Sbjct: 266 GVNEKELRPNGLPKSLIRYDARQKEKALGS 295
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 57/81 (70%), Gaps = 3/81 (3%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT + R E++G+NCRFL G +TD +
Sbjct: 423 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEFTREEILGRNCRFLQGPETDQATV 482
Query: 303 YQVSIAISPYPKKKSIYMEYV 323
++ AI ++K I ++ +
Sbjct: 483 QKIRDAIK---EQKEITVQLI 500
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 45/71 (63%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L ++Q+FV+ D PD P+VYAS F +TGY E+VG+NCRFL G DTD
Sbjct: 144 VSQDLKDALATLQQTFVVSDATKPDCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGKDTD 203
Query: 299 TTVLYQVSIAI 309
+ ++ A+
Sbjct: 204 QNEVAKIRDAV 214
>gi|387766388|pdb|4EEU|A Chain A, Crystal Structure Of Philov2.1
Length = 118
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 69/102 (67%), Gaps = 1/102 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
SF ITDP + +PI+FAS GFL+++ +SR EI+GRN R QGP T++ T+ +IR+AIR++
Sbjct: 12 SFVITDPRLPDYPIIFASDGFLELTEYSREEIMGRNARFLQGPETDQATVQKIRDAIRDQ 71
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
R V L+NY K G FW L + V ++ G +F+ VQ+
Sbjct: 72 RETTVQLINYTKSGKKFWNLLHLQPVRDRKGG-LQYFIGVQL 112
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
I++SFV+ DP LPD P+++ASD FL+LT Y R E++G+N RFL G +TD + ++ AI
Sbjct: 9 IEKSFVITDPRLPDYPIIFASDGFLELTEYSREEIMGRNARFLQGPETDQATVQKIRDAI 68
>gi|387766385|pdb|4EES|A Chain A, Crystal Structure Of Ilov
gi|387766386|pdb|4EET|B Chain B, Crystal Structure Of Ilov
gi|387766387|pdb|4EET|D Chain D, Crystal Structure Of Ilov
Length = 115
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 69/102 (67%), Gaps = 1/102 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+F ITDP + +PI+FAS GFL+++ +SR EI+GRN R QGP T++ T+ +IR+AIR++
Sbjct: 9 NFVITDPRLPDNPIIFASDGFLELTEYSREEILGRNARFLQGPETDQATVQKIRDAIRDQ 68
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
R V L+NY K G FW L + V ++ G +F+ VQ+
Sbjct: 69 RETTVQLINYTKSGKKFWNLLHLQPVRDQK-GELQYFIGVQL 109
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 44/60 (73%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
I+++FV+ DP LPD P+++ASD FL+LT Y R E++G+N RFL G +TD + ++ AI
Sbjct: 6 IEKNFVITDPRLPDNPIIFASDGFLELTEYSREEILGRNARFLQGPETDQATVQKIRDAI 65
>gi|302779868|ref|XP_002971709.1| hypothetical protein SELMODRAFT_172224 [Selaginella moellendorffii]
gi|300160841|gb|EFJ27458.1| hypothetical protein SELMODRAFT_172224 [Selaginella moellendorffii]
Length = 930
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ ++R EI+GRN R QG T+ T+ +IR
Sbjct: 405 LERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGAGTDVETVKKIR 464
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AIRE+R I V LLNY K G PFW LF + G +F+ VQ+
Sbjct: 465 DAIREQRDITVQLLNYTKSGKPFWNLFHLQ-AMKDNKGELQYFIGVQL 511
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 74/119 (62%), Gaps = 1/119 (0%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + EAL +F ++D + + +PI++AS GF M+G++ E+IGRN R QG T
Sbjct: 135 RVSKELREALSTFQQTFVVSDATKADYPILYASAGFYNMTGYTSKEVIGRNCRFLQGSGT 194
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+ + +IR+A+RE + LLNYKKDGTPFW L ++ + E+G+ ++ +QV +
Sbjct: 195 DPIDVSKIRDALREGQSFCGRLLNYKKDGTPFWNLLTIAPI-KDENGKILKYIGMQVEV 252
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 49/67 (73%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G TD +
Sbjct: 401 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGAGTDVETV 460
Query: 303 YQVSIAI 309
++ AI
Sbjct: 461 KKIRDAI 467
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 4/136 (2%)
Query: 176 DRVLALDSDDTGLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGK--RCSL 233
D V+A + + GL ++ + + KA T+ + S S ++GR R
Sbjct: 73 DAVIAERAAEWGLTVKADMNSGKVHGVKARTSAEEKRS--RRNSDMSGRTSEEHEGRTDS 130
Query: 234 PGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLN 293
+ +S L +L +Q+FV+ D D P++YAS F +TGY EV+G+NCRFL
Sbjct: 131 TSVPRVSKELREALSTFQQTFVVSDATKADYPILYASAGFYNMTGYTSKEVIGRNCRFLQ 190
Query: 294 GVDTDTTVLYQVSIAI 309
G TD + ++ A+
Sbjct: 191 GSGTDPIDVSKIRDAL 206
>gi|255546656|ref|XP_002514387.1| serine/threonine protein kinase, putative [Ricinus communis]
gi|223546484|gb|EEF47983.1| serine/threonine protein kinase, putative [Ricinus communis]
Length = 984
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 72/109 (66%), Gaps = 1/109 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
L+ + +F ITDP + +PI+FAS FL+++ ++R EI+GRN R QGP T+ T+ +I
Sbjct: 454 TLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDLATVSKI 513
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
R+AIRE+R I V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 514 RDAIREQREITVQLINYTKSGKKFWNLFHLQPMRDQK-GELQYFIGVQL 561
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 83/140 (59%), Gaps = 9/140 (6%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + +AL L +F ++D + PI++AS GF M+G+S E+IGRN R QGP T
Sbjct: 174 RVSQELKDALSSLQQTFVVSDATKPDCPIMYASSGFFTMTGYSSKEVIGRNCRFLQGPET 233
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPI 133
+ + + +IR+A++ + LLNYKKDGTPFW L ++ + K+D G F+ +QV +
Sbjct: 234 DEKEVEKIRDAVKSGQSYCGRLLNYKKDGTPFWNLLTVTPI--KDDRGNTIKFIGMQVEV 291
Query: 134 ------VSRKHMRNSGMSYS 147
++ K +R +G+ S
Sbjct: 292 SKYTEGINEKALRPNGLPKS 311
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 50/67 (74%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 451 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDLATV 510
Query: 303 YQVSIAI 309
++ AI
Sbjct: 511 SKIRDAI 517
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 45/71 (63%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L ++Q+FV+ D PD P++YAS F +TGY EV+G+NCRFL G +TD
Sbjct: 175 VSQELKDALSSLQQTFVVSDATKPDCPIMYASSGFFTMTGYSSKEVIGRNCRFLQGPETD 234
Query: 299 TTVLYQVSIAI 309
+ ++ A+
Sbjct: 235 EKEVEKIRDAV 245
>gi|225428366|ref|XP_002280118.1| PREDICTED: phototropin-2 [Vitis vinifera]
Length = 1001
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 73/108 (67%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ ++R EI+GRN R QGP T++ T+ +IR
Sbjct: 476 LERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQGTVSKIR 535
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AIR++R I V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 536 DAIRQQREITVQLINYTKSGKKFWNLFHLQPMRDQK-GELQYFIGVQL 582
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 86/155 (55%), Gaps = 9/155 (5%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + +AL L +F ++D + PI+FAS GF M+G++ E+IGRN R QGP T
Sbjct: 184 RVSQELKDALSTLQQTFVVSDATKPDCPIMFASSGFFSMTGYTSKEVIGRNCRFLQGPDT 243
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPI 133
+ + +IR +++ LLNYKKDGTPFW L ++ + K+D G F+ +QV +
Sbjct: 244 DENEVAKIRNSVKTGNSYCGRLLNYKKDGTPFWNLLTITPI--KDDKGNVIKFIGMQVEV 301
Query: 134 ------VSRKHMRNSGMSYSEDGGGSRLREIVFGS 162
V+ K +R +G+ S +R +E GS
Sbjct: 302 SKYTEGVNEKAVRPNGLPQSLIRYDARQKEKALGS 336
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 50/67 (74%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 472 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQGTV 531
Query: 303 YQVSIAI 309
++ AI
Sbjct: 532 SKIRDAI 538
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 43/67 (64%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L ++Q+FV+ D PD P+++AS F +TGY EV+G+NCRFL G DTD
Sbjct: 185 VSQELKDALSTLQQTFVVSDATKPDCPIMFASSGFFSMTGYTSKEVIGRNCRFLQGPDTD 244
Query: 299 TTVLYQV 305
+ ++
Sbjct: 245 ENEVAKI 251
>gi|297744446|emb|CBI37708.3| unnamed protein product [Vitis vinifera]
Length = 979
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 73/108 (67%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ ++R EI+GRN R QGP T++ T+ +IR
Sbjct: 454 LERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQGTVSKIR 513
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AIR++R I V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 514 DAIRQQREITVQLINYTKSGKKFWNLFHLQPMRDQK-GELQYFIGVQL 560
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 86/155 (55%), Gaps = 9/155 (5%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + +AL L +F ++D + PI+FAS GF M+G++ E+IGRN R QGP T
Sbjct: 162 RVSQELKDALSTLQQTFVVSDATKPDCPIMFASSGFFSMTGYTSKEVIGRNCRFLQGPDT 221
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPI 133
+ + +IR +++ LLNYKKDGTPFW L ++ + K+D G F+ +QV +
Sbjct: 222 DENEVAKIRNSVKTGNSYCGRLLNYKKDGTPFWNLLTITPI--KDDKGNVIKFIGMQVEV 279
Query: 134 ------VSRKHMRNSGMSYSEDGGGSRLREIVFGS 162
V+ K +R +G+ S +R +E GS
Sbjct: 280 SKYTEGVNEKAVRPNGLPQSLIRYDARQKEKALGS 314
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 50/67 (74%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 450 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQGTV 509
Query: 303 YQVSIAI 309
++ AI
Sbjct: 510 SKIRDAI 516
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 43/67 (64%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L ++Q+FV+ D PD P+++AS F +TGY EV+G+NCRFL G DTD
Sbjct: 163 VSQELKDALSTLQQTFVVSDATKPDCPIMFASSGFFSMTGYTSKEVIGRNCRFLQGPDTD 222
Query: 299 TTVLYQV 305
+ ++
Sbjct: 223 ENEVAKI 229
>gi|387766384|pdb|4EER|A Chain A, Crystal Structure Of Lov2 Domain Of Arabidopsis Thaliana
Phototropin 2 C426a Mutant
Length = 115
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 69/102 (67%), Gaps = 1/102 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+F I+DP + +PI+FAS FL+++ +SR EI+GRN R QGP T++ T+ +IR+AIR++
Sbjct: 9 NFVISDPRLPDNPIIFASDSFLELTEYSREEILGRNARFLQGPETDQATVQKIRDAIRDQ 68
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
R I V L+NY K G FW LF + + + G +F+ VQ+
Sbjct: 69 REITVQLINYTKSGKKFWNLFHLQPM-RDQKGELQYFIGVQL 109
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 45/60 (75%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
I+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+N RFL G +TD + ++ AI
Sbjct: 6 IEKNFVISDPRLPDNPIIFASDSFLELTEYSREEILGRNARFLQGPETDQATVQKIRDAI 65
>gi|414870626|tpg|DAA49183.1| TPA: putative phototropin family protein kinase [Zea mays]
Length = 703
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 72/108 (66%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ ++R EI+GRN R QGP T+ T+ +IR
Sbjct: 383 LERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDMSTVDKIR 442
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
EAIRE++ I V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 443 EAIREQKEITVQLINYTKSGKKFWNLFHLQPMRDQK-GELQYFIGVQL 489
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 80/139 (57%), Gaps = 7/139 (5%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + +AL L +F ++D + PI++AS GF M+G++ E+ GRN R QGP T
Sbjct: 100 RVSQELKDALSSLQQTFVVSDATRPDCPIIYASAGFYTMTGYTPKEVTGRNCRFLQGPDT 159
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI- 133
+ + +IR+A++ R LLNY+KDGTPFW + ++ + ++G+ F+ +QV +
Sbjct: 160 DMNEVAKIRDAVKTGRSFCGRLLNYRKDGTPFWNMLTVTPI-RDDNGKVIKFIGMQVEVS 218
Query: 134 -----VSRKHMRNSGMSYS 147
+S K MR + M S
Sbjct: 219 KYTEGLSEKRMRPNEMPVS 237
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 51/67 (76%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD + +
Sbjct: 379 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDMSTV 438
Query: 303 YQVSIAI 309
++ AI
Sbjct: 439 DKIREAI 445
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 45/74 (60%)
Query: 236 MGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGV 295
M +S L +L ++Q+FV+ D PD P++YAS F +TGY EV G+NCRFL G
Sbjct: 98 MPRVSQELKDALSSLQQTFVVSDATRPDCPIIYASAGFYTMTGYTPKEVTGRNCRFLQGP 157
Query: 296 DTDTTVLYQVSIAI 309
DTD + ++ A+
Sbjct: 158 DTDMNEVAKIRDAV 171
>gi|414870627|tpg|DAA49184.1| TPA: putative phototropin family protein kinase [Zea mays]
Length = 905
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 72/109 (66%), Gaps = 1/109 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
L+ + +F ITDP + +PI+FAS FL+++ ++R EI+GRN R QGP T+ T+ +I
Sbjct: 382 TLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDMSTVDKI 441
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
REAIRE++ I V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 442 REAIREQKEITVQLINYTKSGKKFWNLFHLQPMRDQK-GELQYFIGVQL 489
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 7/154 (4%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + +AL L +F ++D + PI++AS GF M+G++ E+ GRN R QGP T
Sbjct: 100 RVSQELKDALSSLQQTFVVSDATRPDCPIIYASAGFYTMTGYTPKEVTGRNCRFLQGPDT 159
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI- 133
+ + +IR+A++ R LLNY+KDGTPFW + ++ + ++G+ F+ +QV +
Sbjct: 160 DMNEVAKIRDAVKTGRSFCGRLLNYRKDGTPFWNMLTVTPI-RDDNGKVIKFIGMQVEVS 218
Query: 134 -----VSRKHMRNSGMSYSEDGGGSRLREIVFGS 162
+S K MR + M S R +E S
Sbjct: 219 KYTEGLSEKRMRPNEMPVSLIHYDDRQKETAMSS 252
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 51/67 (76%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD + +
Sbjct: 379 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDMSTV 438
Query: 303 YQVSIAI 309
++ AI
Sbjct: 439 DKIREAI 445
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 45/74 (60%)
Query: 236 MGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGV 295
M +S L +L ++Q+FV+ D PD P++YAS F +TGY EV G+NCRFL G
Sbjct: 98 MPRVSQELKDALSSLQQTFVVSDATRPDCPIIYASAGFYTMTGYTPKEVTGRNCRFLQGP 157
Query: 296 DTDTTVLYQVSIAI 309
DTD + ++ A+
Sbjct: 158 DTDMNEVAKIRDAV 171
>gi|226531740|ref|NP_001147477.1| phototropin-1 [Zea mays]
gi|195611646|gb|ACG27653.1| phototropin-1 [Zea mays]
Length = 899
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 72/108 (66%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ ++R EI+GRN R QGP T+ T+ +IR
Sbjct: 377 LERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDMSTVDKIR 436
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
EAIRE++ I V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 437 EAIREQKEITVQLINYTKSGKKFWNLFHLQPMRDQK-GELQYFIGVQL 483
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 7/154 (4%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + +AL L +F ++D + PI++AS GF M+G++ E+ GRN R QGP T
Sbjct: 92 RVSQELKDALSSLQQTFVVSDATRPDCPIIYASAGFYTMTGYTPKEVTGRNCRFLQGPDT 151
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI- 133
+ + +IR+A++ R LLNY+KDGTPFW + ++ + ++G+ F+ +QV +
Sbjct: 152 DMNEVAKIRDAVKTGRSFCGRLLNYRKDGTPFWNMLTVTPI-RDDNGKVIKFIGMQVEVS 210
Query: 134 -----VSRKHMRNSGMSYSEDGGGSRLREIVFGS 162
+S K MR + M S R +E S
Sbjct: 211 KYTEGLSEKRMRPNEMPVSLIHYDDRQKETAMSS 244
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 51/67 (76%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD + +
Sbjct: 373 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDMSTV 432
Query: 303 YQVSIAI 309
++ AI
Sbjct: 433 DKIREAI 439
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 45/74 (60%)
Query: 236 MGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGV 295
M +S L +L ++Q+FV+ D PD P++YAS F +TGY EV G+NCRFL G
Sbjct: 90 MPRVSQELKDALSSLQQTFVVSDATRPDCPIIYASAGFYTMTGYTPKEVTGRNCRFLQGP 149
Query: 296 DTDTTVLYQVSIAI 309
DTD + ++ A+
Sbjct: 150 DTDMNEVAKIRDAV 163
>gi|46518266|dbj|BAD16729.1| phototropin 2 [Adiantum capillus-veneris]
gi|46518268|dbj|BAD16730.1| phototropin 2 [Adiantum capillus-veneris]
Length = 1019
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 73/108 (67%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ ++R EIIGRN R QG T+++T+ +IR
Sbjct: 487 LERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEIIGRNCRFLQGQDTDQKTVQKIR 546
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AIRE+R I V LLNY K G FW LF + + ++ G +F+ VQ+
Sbjct: 547 DAIREQREITVQLLNYTKTGKRFWNLFHLQPMRDQK-GELQYFIGVQL 593
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 76/134 (56%), Gaps = 7/134 (5%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL+ +F ++D + +PI++AS GF KM+G+S E+IGRN R QG T+ +
Sbjct: 212 LKDALETFQQTFVVSDATRPDYPILYASAGFFKMTGYSSKEVIGRNCRFLQGADTDPDDV 271
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR--- 136
IRE++ E + LLNYKKDGT FW L ++ + E+G F+ +QV +
Sbjct: 272 ERIRESLAEGKNYCGRLLNYKKDGTAFWNLLTIAPI-KDEEGNVLKFIGMQVEVSKHTEG 330
Query: 137 ---KHMRNSGMSYS 147
K +R +G+ S
Sbjct: 331 HKVKALRPNGLPES 344
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 50/67 (74%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G DTD +
Sbjct: 483 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEIIGRNCRFLQGQDTDQKTV 542
Query: 303 YQVSIAI 309
++ AI
Sbjct: 543 QKIRDAI 549
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 40/60 (66%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L +Q+FV+ D PD P++YAS F K+TGY EV+G+NCRFL G DTD
Sbjct: 208 VSKDLKDALETFQQTFVVSDATRPDYPILYASAGFFKMTGYSSKEVIGRNCRFLQGADTD 267
>gi|399066184|ref|ZP_10748269.1| PAS domain S-box [Novosphingobium sp. AP12]
gi|398028504|gb|EJL22012.1| PAS domain S-box [Novosphingobium sp. AP12]
Length = 470
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 67/100 (67%), Gaps = 1/100 (1%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
IT+P + +PIVF +R F+ ++GF R+E+IGRN R QGPRT++ + +REAI
Sbjct: 3 MVITNPLLPDNPIVFVNRAFISLTGFERSEVIGRNCRFLQGPRTDKSQVARMREAITSRV 62
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
PIE++LLNY+K+GT FW +S VF +DG ++ A Q
Sbjct: 63 PIELDLLNYRKNGTHFWNRLLVSPVFA-DDGNLLYYFASQ 101
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 42/57 (73%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
V+ +P LPD P+V+ + AF+ LTG++R+EV+G+NCRFL G TD + + ++ AI+
Sbjct: 3 MVITNPLLPDNPIVFVNRAFISLTGFERSEVIGRNCRFLQGPRTDKSQVARMREAIT 59
>gi|448579150|ref|ZP_21644427.1| bacterio-opsin activator [Haloferax larsenii JCM 13917]
gi|445723829|gb|ELZ75465.1| bacterio-opsin activator [Haloferax larsenii JCM 13917]
Length = 661
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 71/125 (56%), Gaps = 1/125 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P TI+D S+ HP+V+A+ F M+G++ E +GRN R QG +TN+ + E+
Sbjct: 136 AMDEAPVGITISDGSLPDHPLVYANDAFESMTGYTIEEALGRNCRYLQGDKTNQERVAEL 195
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R AI E V LLNY++DG+ FW ++ + G DG TH+V Q I R +
Sbjct: 196 RRAIDAEESASVELLNYRRDGSTFWNRVDIAPLPGP-DGSVTHYVGFQTDITERVRAEQA 254
Query: 143 GMSYS 147
Y+
Sbjct: 255 AERYA 259
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%)
Query: 258 DPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYPKKKS 317
D LPD P+VYA+DAF +TGY E +G+NCR+L G T+ + ++ AI
Sbjct: 148 DGSLPDHPLVYANDAFESMTGYTIEEALGRNCRYLQGDKTNQERVAELRRAIDAEESASV 207
Query: 318 IYMEYVR 324
+ Y R
Sbjct: 208 ELLNYRR 214
>gi|302819840|ref|XP_002991589.1| hypothetical protein SELMODRAFT_186203 [Selaginella moellendorffii]
gi|300140622|gb|EFJ07343.1| hypothetical protein SELMODRAFT_186203 [Selaginella moellendorffii]
Length = 926
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ ++R EI+GRN R QG T+ T+ +IR
Sbjct: 405 LERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGAGTDVETVKKIR 464
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AI+E+R I V LLNY K G PFW LF + G +F+ VQ+
Sbjct: 465 DAIKEQRDITVQLLNYTKSGKPFWNLFHLQ-AMKDNQGELQYFIGVQL 511
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 73/119 (61%), Gaps = 1/119 (0%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + EAL +F ++D + + +PI++AS GF M+G++ E+IGRN R QG T
Sbjct: 135 RVSKELREALSTFQQTFVVSDATKADYPILYASAGFYNMTGYTSKEVIGRNCRFLQGSGT 194
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+ + +IR+A+RE LLNYKKDGTPFW L ++ + E+G+ ++ +QV +
Sbjct: 195 DPIDVSKIRDALREGESFCGRLLNYKKDGTPFWNLLTIAPI-KDENGKILKYIGMQVEV 252
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 49/67 (73%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G TD +
Sbjct: 401 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGAGTDVETV 460
Query: 303 YQVSIAI 309
++ AI
Sbjct: 461 KKIRDAI 467
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L +Q+FV+ D D P++YAS F +TGY EV+G+NCRFL G TD
Sbjct: 136 VSKELREALSTFQQTFVVSDATKADYPILYASAGFYNMTGYTSKEVIGRNCRFLQGSGTD 195
Query: 299 TTVLYQVSIAI 309
+ ++ A+
Sbjct: 196 PIDVSKIRDAL 206
>gi|168044289|ref|XP_001774614.1| PHOTA2 phototropin A2 blue light photoreceptor [Physcomitrella
patens subsp. patens]
gi|50510313|dbj|BAD32623.1| phototropin [Physcomitrella patens]
gi|162674034|gb|EDQ60548.1| PHOTA2 phototropin A2 blue light photoreceptor [Physcomitrella
patens subsp. patens]
Length = 1095
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 70/109 (64%), Gaps = 1/109 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
L+ + +F ITDP + +PI+FAS FL+++ ++R E++GRN R QG T++ T+ +I
Sbjct: 561 TLERIDKNFVITDPRLPDNPIIFASDEFLELTEYTREEVLGRNCRFLQGQDTDQNTVQQI 620
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
R+AI+E R I V LLNY K G PFW LF + + G +F+ VQ+
Sbjct: 621 RDAIKENRDITVQLLNYTKSGKPFWNLFHLQ-AMRDQRGELQYFIGVQL 668
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 68/112 (60%), Gaps = 1/112 (0%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+AL +F ++D + +PI++AS GF M+G+S E+IG N R QGP T+ + +
Sbjct: 277 DALSSFKQTFVVSDATKPDYPIMYASAGFFSMTGYSPKEVIGYNCRFLQGPDTDPMEVEK 336
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
IR+A+R +P LLNY+KDGT FW L ++ + E+ + F+ +QV +
Sbjct: 337 IRQAVRTGKPFCGRLLNYRKDGTQFWNLLTITPI-KDENDKVIKFIGMQVEV 387
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 48/67 (71%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI ++FV+ DP LPD P+++ASD FL+LT Y R EV+G+NCRFL G DTD +
Sbjct: 558 LATTLERIDKNFVITDPRLPDNPIIFASDEFLELTEYTREEVLGRNCRFLQGQDTDQNTV 617
Query: 303 YQVSIAI 309
Q+ AI
Sbjct: 618 QQIRDAI 624
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 43/71 (60%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L KQ+FV+ D PD P++YAS F +TGY EV+G NCRFL G DTD
Sbjct: 271 VSEDLLDALSSFKQTFVVSDATKPDYPIMYASAGFFSMTGYSPKEVIGYNCRFLQGPDTD 330
Query: 299 TTVLYQVSIAI 309
+ ++ A+
Sbjct: 331 PMEVEKIRQAV 341
>gi|337278915|ref|YP_004618386.1| hybrid histidine kinase [Ramlibacter tataouinensis TTB310]
gi|334729991|gb|AEG92367.1| candidate histidine kinase, hybrid [Ramlibacter tataouinensis
TTB310]
Length = 537
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 66/107 (61%), Gaps = 1/107 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
+TDP +PI F + FL M+G+ AE++GRN R+ QGP T+ T+ EIR A+ E+R
Sbjct: 44 MVVTDPHQPDNPIAFVNDAFLDMTGYEEAEVLGRNCRILQGPETDSETVAEIRTALAEQR 103
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+ V++LNYK DGTPFW + +F GR H+ + Q+ I R+
Sbjct: 104 AVAVDILNYKADGTPFWNALFIGPIFDSR-GRLIHWSSSQMDITRRR 149
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Query: 228 GKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQ 287
G+ +P G + + ++ + V+ DPH PD P+ + +DAFL +TGY+ EV+G+
Sbjct: 21 GQGAGVPATGNL---FFAAVEMTRMPMVVTDPHQPDNPIAFVNDAFLDMTGYEEAEVLGR 77
Query: 288 NCRFLNGVDTDTTVLYQVSIAIS 310
NCR L G +TD+ + ++ A++
Sbjct: 78 NCRILQGPETDSETVAEIRTALA 100
>gi|297582818|ref|YP_003698598.1| putative PAS/PAC sensor protein [Bacillus selenitireducens MLS10]
gi|297141275|gb|ADH98032.1| putative PAS/PAC sensor protein [Bacillus selenitireducens MLS10]
Length = 256
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 74/119 (62%), Gaps = 1/119 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
F I+DP + +PI++A+RGF++++G+S E+IG N R QG T+ +T+ +REAIR
Sbjct: 19 FIISDPDLPDNPIIYANRGFMELTGYSTDEVIGYNCRFLQGDDTSPQTVSILREAIRLME 78
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSED 149
P+ V +LNYKK G PFW L + ++ +E+ + +FV +Q I K SY ++
Sbjct: 79 PVSVEILNYKKSGEPFWNLLHIDPIYLEEEDKY-YFVGIQKDITEIKQAEQKIASYHKE 136
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 37/51 (72%)
Query: 247 LGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDT 297
L + + F++ DP LPD P++YA+ F++LTGY +EV+G NCRFL G DT
Sbjct: 12 LEKTQLVFIISDPDLPDNPIIYANRGFMELTGYSTDEVIGYNCRFLQGDDT 62
>gi|256032285|pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 76/121 (62%), Gaps = 3/121 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+R T+ +I
Sbjct: 16 TLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNARFLQGPETDRATVRKI 75
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R+AI + + V L+NY K G FW LF + + ++ G +F+ VQ+ +H+R++
Sbjct: 76 RDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGVQLD--GTEHVRDA 132
Query: 143 G 143
Sbjct: 133 A 133
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 50/68 (73%)
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTV 301
SL +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+N RFL G +TD
Sbjct: 12 SLATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNARFLQGPETDRAT 71
Query: 302 LYQVSIAI 309
+ ++ AI
Sbjct: 72 VRKIRDAI 79
>gi|448374219|ref|ZP_21558104.1| bacterio-opsin activator [Halovivax asiaticus JCM 14624]
gi|445660896|gb|ELZ13691.1| bacterio-opsin activator [Halovivax asiaticus JCM 14624]
Length = 674
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 73/130 (56%), Gaps = 3/130 (2%)
Query: 10 QSFNNRYTLWVHE-ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM 68
+ ++R V E A+DE P ITDP +P+V+ + F ++G+S +E IGRN R
Sbjct: 141 EQLDDREERRVKERAMDEAPVGIAITDPDRPDNPLVYVNDSFEALTGYSPSETIGRNCRF 200
Query: 69 FQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVA 128
QGP T+ I ++R AI P+ V L NY+ DG FW +++ V EDG+ THFV
Sbjct: 201 LQGPETDLEAIAKLRAAIDAAEPVAVELRNYRADGEVFWNRVEIAPV--TEDGQVTHFVG 258
Query: 129 VQVPIVSRKH 138
Q + +RK
Sbjct: 259 YQTDVTARKE 268
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ DP PD P+VY +D+F LTGY +E +G+NCRFL G +TD + ++ AI
Sbjct: 163 IAITDPDRPDNPLVYVNDSFEALTGYSPSETIGRNCRFLQGPETDLEAIAKLRAAI 218
>gi|387766383|pdb|4EEP|A Chain A, Crystal Structure Of Lov2 Domain Of Arabidopsis Thaliana
Phototropin 2
Length = 115
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 70/102 (68%), Gaps = 1/102 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+F I+DP + +PI+FAS FL+++ +SR EI+GRN R QGP T++ T+ +IR+AIR++
Sbjct: 9 NFVISDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDQATVQKIRDAIRDQ 68
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
R I V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 69 REITVQLINYTKSGKKFWNLFHLQPMRDQK-GELQYFIGVQL 109
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 46/60 (76%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
I+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD + ++ AI
Sbjct: 6 IEKNFVISDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDQATVQKIRDAI 65
>gi|168067656|ref|XP_001785726.1| PHOTB2 phototropin B2 blue light photoreceptor [Physcomitrella
patens subsp. patens]
gi|50510317|dbj|BAD32625.1| phototropin [Physcomitrella patens]
gi|162662632|gb|EDQ49461.1| PHOTB2 phototropin B2 blue light photoreceptor [Physcomitrella
patens subsp. patens]
Length = 1171
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 75/124 (60%), Gaps = 1/124 (0%)
Query: 8 IEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGR 67
+E+S R + + L+ + +F ITDP + +PI+FAS FL+++ ++R EI+GRN R
Sbjct: 618 VERSKEIRRGIDLATTLERIAKNFVITDPRLPDNPIIFASDEFLELTEYTREEILGRNCR 677
Query: 68 MFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFV 127
QGP T+R + +IR+AI R I V LLNY K G PFW LF + +G +F+
Sbjct: 678 FLQGPDTDRAVVDQIRDAIAARRDITVQLLNYTKSGKPFWNLFHLQ-AMRDHNGELQYFI 736
Query: 128 AVQV 131
VQ+
Sbjct: 737 GVQL 740
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 76/134 (56%), Gaps = 7/134 (5%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL +F ++D + PI++AS GF M+G++ E+IGRN R QGP T+ +
Sbjct: 339 IKDALSTFQQTFVVSDATQPDFPILYASAGFFNMTGYTPKEVIGRNCRFLQGPGTDPEDV 398
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV----- 134
IR+A++E R LLNYKKDG+ FW L ++ + +DG+ F+ +QV +
Sbjct: 399 TRIRDALKEGRSFCGRLLNYKKDGSAFWNLLTITPI-KDDDGKVLKFIGMQVEVSKHTEG 457
Query: 135 -SRKHMRNSGMSYS 147
K +R +G+ S
Sbjct: 458 KKEKALRPNGLPES 471
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 50/68 (73%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI ++FV+ DP LPD P+++ASD FL+LT Y R E++G+NCRFL G DTD V+
Sbjct: 630 LATTLERIAKNFVITDPRLPDNPIIFASDEFLELTEYTREEILGRNCRFLQGPDTDRAVV 689
Query: 303 YQVSIAIS 310
Q+ AI+
Sbjct: 690 DQIRDAIA 697
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S + +L +Q+FV+ D PD P++YAS F +TGY EV+G+NCRFL G TD
Sbjct: 335 VSREIKDALSTFQQTFVVSDATQPDFPILYASAGFFNMTGYTPKEVIGRNCRFLQGPGTD 394
Query: 299 TTVLYQVSIAI 309
+ ++ A+
Sbjct: 395 PEDVTRIRDAL 405
>gi|448452034|ref|ZP_21593127.1| HTR-like protein [Halorubrum litoreum JCM 13561]
gi|445809942|gb|EMA59977.1| HTR-like protein [Halorubrum litoreum JCM 13561]
Length = 596
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 72/127 (56%), Gaps = 2/127 (1%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
ALDE P TITDP+ +P+V+ + F++M+G+ R E IG N R QGP T ++ E+
Sbjct: 263 ALDEAPVGITITDPAREDNPMVYVNDRFVEMTGYDREESIGVNCRFLQGPDTEEESVQEL 322
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
REAI E V LLNY+KDGT FW ++ + DG TH+V Q I + K R +
Sbjct: 323 REAIDAEESTSVELLNYRKDGTEFWNRVSIAPICDA-DGAVTHWVGFQEDITAFKE-REA 380
Query: 143 GMSYSED 149
+ D
Sbjct: 381 ALERQND 387
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
+L + DP D PMVY +D F+++TGYDR E +G NCRFL G DT+ + ++
Sbjct: 263 ALDEAPVGITITDPAREDNPMVYVNDRFVEMTGYDREESIGVNCRFLQGPDTEEESVQEL 322
Query: 306 SIAI 309
AI
Sbjct: 323 REAI 326
>gi|457711|emb|CAA82993.1| protein kinase [Spinacia oleracea]
Length = 724
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 73/109 (66%), Gaps = 1/109 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
L+ + +F I+DP + +PI+FAS FL+++ ++R EI+GRN R QGP T++ T+ +I
Sbjct: 197 TLERIEKNFVISDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQTTVQKI 256
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
R+AI+E+R I V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 257 RDAIKEQRDITVQLINYTKSGRKFWNLFHLQPMRDQK-GELQYFIGVQL 304
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 51/67 (76%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD T +
Sbjct: 194 LATTLERIEKNFVISDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQTTV 253
Query: 303 YQVSIAI 309
++ AI
Sbjct: 254 QKIRDAI 260
>gi|308067316|ref|YP_003868921.1| GAF domain containing protein [Paenibacillus polymyxa E681]
gi|305856595|gb|ADM68383.1| GAF domain containing protein [Paenibacillus polymyxa E681]
Length = 825
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 79/145 (54%), Gaps = 3/145 (2%)
Query: 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRT 78
W+ +AL+ ITD + PI++A+ GF K++G++R EIIG N R QGP T+
Sbjct: 200 WLMKALEHSSAGVVITDATDPDLPIIYANPGFTKLTGYAREEIIGHNCRFLQGPGTDAAA 259
Query: 79 IMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
+ ++R IRE+ V LLNY+KDGT FW ++ V E G HFV +Q I SRK
Sbjct: 260 LAKVRRGIREQAMTRVELLNYRKDGTSFWNELLINPV-DNEQGDVIHFVGIQNDISSRKA 318
Query: 139 MRNS--GMSYSEDGGGSRLREIVFG 161
+ Y +D L +I++
Sbjct: 319 AEQALENAFYEQDHLLQSLPDIIYA 343
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 238 FISSSLYI--SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGV 295
I+S+ ++ +L V+ D PD+P++YA+ F KLTGY R E++G NCRFL G
Sbjct: 194 LIASNAWLMKALEHSSAGVVITDATDPDLPIIYANPGFTKLTGYAREEIIGHNCRFLQGP 253
Query: 296 DTDTTVLYQVSIAI 309
TD L +V I
Sbjct: 254 GTDAAALAKVRRGI 267
>gi|168025773|ref|XP_001765408.1| PHOTA3 phototropin photoreceptor [Physcomitrella patens subsp.
patens]
gi|162683461|gb|EDQ69871.1| PHOTA3 phototropin photoreceptor [Physcomitrella patens subsp.
patens]
Length = 1069
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 70/109 (64%), Gaps = 1/109 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
+L+ + +F ITDP + +PI+FAS FL ++ +SR E++GRN R QGP TN T+ +I
Sbjct: 524 SLERINKNFVITDPRLPDNPIIFASDEFLDLTEYSREEVLGRNCRFLQGPETNPETVKQI 583
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
R+++ + + I V LLNY K G PFW LF + V + G +F+ +Q+
Sbjct: 584 RDSVADGKDITVQLLNYTKSGKPFWNLFHLQTVRDHQ-GELQYFIGLQL 631
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 83/139 (59%), Gaps = 7/139 (5%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + AL +F ++D + +PI+FAS FL M+G+S EIIG+N R QGP+T
Sbjct: 249 RISADLQRALSSFQQTFVVSDATQPDYPIMFASACFLSMTGYSENEIIGQNCRFLQGPQT 308
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
+R ++ +IR+A+++ R LLNYKKDG+ FW L ++ + G + GR ++ +QV +
Sbjct: 309 DRTSVAKIRDALKQGRNFCGRLLNYKKDGSTFWNLLNLTPIRG-DHGRVIMYIGMQVEVS 367
Query: 135 S------RKHMRNSGMSYS 147
K +R +G+S S
Sbjct: 368 KFTEGSREKALRPNGLSAS 386
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 48/68 (70%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L SL RI ++FV+ DP LPD P+++ASD FL LT Y R EV+G+NCRFL G +T+ +
Sbjct: 521 LATSLERINKNFVITDPRLPDNPIIFASDEFLDLTEYSREEVLGRNCRFLQGPETNPETV 580
Query: 303 YQVSIAIS 310
Q+ +++
Sbjct: 581 KQIRDSVA 588
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 55/90 (61%), Gaps = 2/90 (2%)
Query: 222 TGRLVCGKRC--SLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGY 279
+ R V GK S+ G IS+ L +L +Q+FV+ D PD P+++AS FL +TGY
Sbjct: 231 SSRKVNGKSLEGSVDGRVRISADLQRALSSFQQTFVVSDATQPDYPIMFASACFLSMTGY 290
Query: 280 DRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
NE++GQNCRFL G TD T + ++ A+
Sbjct: 291 SENEIIGQNCRFLQGPQTDRTSVAKIRDAL 320
>gi|291295643|ref|YP_003507041.1| PAS/PAC sensor signal transduction histidine kinase [Meiothermus
ruber DSM 1279]
gi|290470602|gb|ADD28021.1| PAS/PAC sensor signal transduction histidine kinase [Meiothermus
ruber DSM 1279]
Length = 578
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 68/108 (62%), Gaps = 1/108 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++ + ITD + +PIV+ + GF++++G+ E++GRN R QGP TN T+ +
Sbjct: 9 AVETILAGVVITDAQLPDYPIVYCNPGFVQLTGYPSEEVLGRNCRFLQGPATNPETVARL 68
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
R AI E RP V LLNY+KDG PFW +++ V E GR THFV +Q
Sbjct: 69 RRAIHEGRPAHVLLLNYRKDGQPFWNDLRIAPVRDVE-GRLTHFVGIQ 115
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 40/65 (61%)
Query: 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQ 304
I++ I V+ D LPD P+VY + F++LTGY EV+G+NCRFL G T+ + +
Sbjct: 8 IAVETILAGVVITDAQLPDYPIVYCNPGFVQLTGYPSEEVLGRNCRFLQGPATNPETVAR 67
Query: 305 VSIAI 309
+ AI
Sbjct: 68 LRRAI 72
>gi|188991140|ref|YP_001903150.1| histidine kinase [Xanthomonas campestris pv. campestris str. B100]
gi|167732900|emb|CAP51096.1| Sensory box histidine kinase/response regulator [Xanthomonas
campestris pv. campestris]
Length = 540
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 71/112 (63%), Gaps = 1/112 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
T+TDP + +PIVFA+R FL+M+G++ EIIG N R QGP T+R+ ++++REAI R
Sbjct: 41 MTVTDPYLPDNPIVFANRAFLEMTGYAADEIIGNNCRFLQGPETDRQAVIDVREAIDNRR 100
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S VF + G+ +F Q+ + R+ ++
Sbjct: 101 EFATEVLNYRKDGSTFWNALFVSPVF-DDTGKLVYFFGSQLDVSRRRDAEDA 151
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 50/84 (59%)
Query: 226 VCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVV 285
+ G+ +LP S + ++ + + DP+LPD P+V+A+ AFL++TGY +E++
Sbjct: 13 LIGESQTLPVSKHRSDIFFAAVETTRMPMTVTDPYLPDNPIVFANRAFLEMTGYAADEII 72
Query: 286 GQNCRFLNGVDTDTTVLYQVSIAI 309
G NCRFL G +TD + V AI
Sbjct: 73 GNNCRFLQGPETDRQAVIDVREAI 96
>gi|384428356|ref|YP_005637715.1| two-component system sensor-response regulator hybrid protein
[Xanthomonas campestris pv. raphani 756C]
gi|341937458|gb|AEL07597.1| two-component system sensor-response regulator hybrid protein
[Xanthomonas campestris pv. raphani 756C]
Length = 540
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 71/112 (63%), Gaps = 1/112 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
T+TDP + +PIVFA+R FL+M+G++ EIIG N R QGP T+R+ ++++REAI R
Sbjct: 41 MTVTDPYLPDNPIVFANRAFLEMTGYAADEIIGNNCRFLQGPETDRQAVIDVREAIDSRR 100
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S VF + G+ +F Q+ + R+ ++
Sbjct: 101 EFATEVLNYRKDGSTFWNALFVSPVF-DDTGKLVYFFGSQLDVSRRRDAEDA 151
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 50/84 (59%)
Query: 226 VCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVV 285
+ G+ +LP S + ++ + + DP+LPD P+V+A+ AFL++TGY +E++
Sbjct: 13 LIGESQTLPVSKHRSDIFFAAVETTRMPMTVTDPYLPDNPIVFANRAFLEMTGYAADEII 72
Query: 286 GQNCRFLNGVDTDTTVLYQVSIAI 309
G NCRFL G +TD + V AI
Sbjct: 73 GNNCRFLQGPETDRQAVIDVREAI 96
>gi|162330142|pdb|2V1A|A Chain A, N- And C-Terminal Helices Of Oat Lov2 (404-546) Are
Involved In Light-Induced Signal Transduction (Room
Temperature (293k) Dark Structure Of Lov2 (404-546))
gi|162330143|pdb|2V1B|A Chain A, N- And C-Terminal Helices Of Oat Lov2 (404-546) Are
Involved In Light-Induced Signal Transduction (Room
Temperature (293k) Light Structure Of Lov2 (404-546))
Length = 144
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 76/121 (62%), Gaps = 3/121 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+R T+ +I
Sbjct: 5 TLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKI 64
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R+AI + + V L+NY K G FW LF + + ++ G +F+ VQ+ +H+R++
Sbjct: 65 RDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGVQLD--GTEHVRDA 121
Query: 143 G 143
Sbjct: 122 A 122
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 50/67 (74%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 2 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATV 61
Query: 303 YQVSIAI 309
++ AI
Sbjct: 62 RKIRDAI 68
>gi|186477108|ref|YP_001858578.1| histidine kinase [Burkholderia phymatum STM815]
gi|184193567|gb|ACC71532.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phymatum
STM815]
Length = 533
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
+TDP + HP++FA+ FL+M+G+ EIIG N R QGP T+R TI E+R A+ + R
Sbjct: 36 MVVTDPHLPDHPVIFANHAFLRMTGYELTEIIGSNCRFLQGPETDRATIDEVRAAVADRR 95
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+ +LNY+KDG+ FW +S VF E G +F Q+ + R+ ++
Sbjct: 96 ELATEILNYRKDGSTFWNALFISPVF-NEQGELVYFFGSQLDVSRRRDAEDA 146
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 46/68 (67%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + V+ DPHLPD P+++A+ AFL++TGY+ E++G NCRFL G +TD +
Sbjct: 25 FFAAVSTTRMPMVVTDPHLPDHPVIFANHAFLRMTGYELTEIIGSNCRFLQGPETDRATI 84
Query: 303 YQVSIAIS 310
+V A++
Sbjct: 85 DEVRAAVA 92
>gi|27807565|dbj|BAC55267.1| phytochrome 3 [Onoclea sensibilis]
Length = 692
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 69/107 (64%), Gaps = 1/107 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + SF ITDP + G+PI+FAS FL+++ +SR E++G N R QG T+R+ + IR
Sbjct: 499 LERIGHSFVITDPRLPGNPIIFASDQFLELTEYSREEVLGENCRFLQGRDTDRKAVQLIR 558
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
+A+ E R + V LLNY K G PFW LF + + K+ G +F+ VQ
Sbjct: 559 DAVEEGRDVTVQLLNYTKGGRPFWNLFHLQAMRDKK-GNLQYFIGVQ 604
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 45/67 (67%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI SFV+ DP LP P+++ASD FL+LT Y R EV+G+NCRFL G DTD +
Sbjct: 495 LATTLERIGHSFVITDPRLPGNPIIFASDQFLELTEYSREEVLGENCRFLQGRDTDRKAV 554
Query: 303 YQVSIAI 309
+ A+
Sbjct: 555 QLIRDAV 561
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
SF + D PI++AS GF ++G++ E+IG N R QGP TN I IREA+ +
Sbjct: 236 SFVVVDALKLDLPIIYASTGFFNLTGYTSREVIGGNCRFLQGPETNPAVIDSIREALVPQ 295
Query: 90 RPIEV--NLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPI 133
LLNY+KDG+ FW L ++ + K+D G + + VQ+ +
Sbjct: 296 GTGTFCGRLLNYRKDGSSFWNLLTIAPI--KDDSGTIVNLIGVQLEV 340
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
+ SFV++D D+P++YAS F LTGY EV+G NCRFL G +T+ V+ + A+
Sbjct: 234 QTSFVVVDALKLDLPIIYASTGFFNLTGYTSREVIGGNCRFLQGPETNPAVIDSIREALV 293
Query: 311 P 311
P
Sbjct: 294 P 294
>gi|256032284|pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 76/121 (62%), Gaps = 3/121 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+R T+ +I
Sbjct: 16 TLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKI 75
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R+AI + + V L+NY K G FW LF + + ++ G +F+ VQ+ +H+R++
Sbjct: 76 RDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGVQLD--GTEHVRDA 132
Query: 143 G 143
Sbjct: 133 A 133
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 51/68 (75%)
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTV 301
SL +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD
Sbjct: 12 SLATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRAT 71
Query: 302 LYQVSIAI 309
+ ++ AI
Sbjct: 72 VRKIRDAI 79
>gi|162330140|pdb|2V0U|A Chain A, N- And C-terminal Helices Of Oat Lov2 (404-546) Are
Involved In Light-induced Signal Transduction (cryo Dark
Structure Of Lov2 (404-546))
gi|162330141|pdb|2V0W|A Chain A, N- And C-Terminal Helices Of Oat Lov2 (404-546) Are
Involved In Light-Induced Signal Transduction (Cryo-
Trapped Light Structure Of Lov2 (404-546))
Length = 146
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 76/121 (62%), Gaps = 3/121 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+R T+ +I
Sbjct: 7 TLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKI 66
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R+AI + + V L+NY K G FW LF + + ++ G +F+ VQ+ +H+R++
Sbjct: 67 RDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGVQLD--GTEHVRDA 123
Query: 143 G 143
Sbjct: 124 A 124
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 50/67 (74%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 4 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATV 63
Query: 303 YQVSIAI 309
++ AI
Sbjct: 64 RKIRDAI 70
>gi|448503726|ref|ZP_21613355.1| HTR-like protein [Halorubrum coriense DSM 10284]
gi|445691927|gb|ELZ44110.1| HTR-like protein [Halorubrum coriense DSM 10284]
Length = 594
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
ALDE P T+TDP +P+V+ + F++M+G+ R E IG N R QGP T ++ E+
Sbjct: 263 ALDEAPVGITVTDPEQEDNPMVYVNDRFVEMTGYDREESIGVNCRFLQGPDTEEASVQEL 322
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
R+AI + P V LLNY+KDGT FW ++ + DG TH+V Q I K
Sbjct: 323 RDAIDADDPTTVELLNYRKDGTEFWNRVSIAPICDA-DGSVTHWVGFQEDITEFKQ 377
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
+L + DP D PMVY +D F+++TGYDR E +G NCRFL G DT+ + ++
Sbjct: 263 ALDEAPVGITVTDPEQEDNPMVYVNDRFVEMTGYDREESIGVNCRFLQGPDTEEASVQEL 322
Query: 306 SIAI 309
AI
Sbjct: 323 RDAI 326
>gi|448535723|ref|ZP_21622243.1| HTR-like protein [Halorubrum hochstenium ATCC 700873]
gi|445703224|gb|ELZ55159.1| HTR-like protein [Halorubrum hochstenium ATCC 700873]
Length = 594
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 68/116 (58%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
ALDE P TITDP +P+V+ + F++M+G+ R E IG N R QGP T ++ ++
Sbjct: 263 ALDEAPVGITITDPQREDNPMVYVNDRFVEMTGYDREESIGVNCRFLQGPDTEEASVQQL 322
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
R+AI + P V LLNY+KDGT FW ++ + DG TH+V Q I + K
Sbjct: 323 RDAIDADEPTSVELLNYRKDGTEFWNRVSIAPI-SDADGTVTHWVGFQEDITAFKE 377
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
+L + DP D PMVY +D F+++TGYDR E +G NCRFL G DT+ + Q+
Sbjct: 263 ALDEAPVGITITDPQREDNPMVYVNDRFVEMTGYDREESIGVNCRFLQGPDTEEASVQQL 322
Query: 306 SIAI 309
AI
Sbjct: 323 RDAI 326
>gi|448304641|ref|ZP_21494577.1| bacterio-opsin activator [Natronorubrum sulfidifaciens JCM 14089]
gi|445590022|gb|ELY44243.1| bacterio-opsin activator [Natronorubrum sulfidifaciens JCM 14089]
Length = 638
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 70/115 (60%), Gaps = 1/115 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++E P TI+DP + +P+V+ + + +M+G+S E++GRN R QG ++ I E+
Sbjct: 136 AINEAPVGITISDPDLEDNPLVYVNDAYQEMTGYSFDEVVGRNCRFLQGDDSSETAIAEM 195
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
AI EERP+ V L NY+KDGT FW ++ V DG TH+V Q + +RK
Sbjct: 196 AAAIDEERPVTVELENYRKDGTSFWNEVTIAPVRDA-DGTVTHYVGFQNDVTARK 249
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 39/56 (69%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ DP L D P+VY +DA+ ++TGY +EVVG+NCRFL G D+ T + +++ AI
Sbjct: 144 ITISDPDLEDNPLVYVNDAYQEMTGYSFDEVVGRNCRFLQGDDSSETAIAEMAAAI 199
>gi|55380223|ref|YP_138072.1| light- and oxygen-sensing histidine kinase [Haloarcula marismortui
ATCC 43049]
gi|55232948|gb|AAV48366.1| putative 22-domain light- and oxygen-sensing histidine kinase
[Haloarcula marismortui ATCC 43049]
Length = 2306
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE ITDP+ + +P+V+ + GF +M+G++ + +GRN R QG T+ + +
Sbjct: 659 AMDEATVGIQITDPTQADNPLVYVNDGFERMTGYTAEDALGRNPRFLQGADTDPEQVARL 718
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140
REAI + P+ V L NY+KDGTP+W ++ V G E+G T++V +Q + R+ +
Sbjct: 719 REAIDADEPVSVELKNYRKDGTPYWARLSITPVTG-ENGTVTNYVGIQQDVTERRERK 775
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE TI+DP G+P+V+ + GF+ +G+SR E +GRN R Q ++ + E+
Sbjct: 1463 AMDEANVGITISDPDREGNPLVYVNDGFVDQTGYSREEALGRNCRFLQRDDRDQSALDEL 1522
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
R+AI E P V L NY+KDG FW ++ ++ + G +++ +Q + K
Sbjct: 1523 RKAIASEEPSIVELRNYRKDGEQFWNRLSVTPIY-DDVGTLANYIGIQQDVSDEK 1576
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
+ DP P+VY +D F+ TGY R E +G+NCRFL D D + L ++ AI+
Sbjct: 1471 ITISDPDREGNPLVYVNDGFVDQTGYSREEALGRNCRFLQRDDRDQSALDELRKAIA 1527
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 256 LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ DP D P+VY +D F ++TGY + +G+N RFL G DTD + ++ AI
Sbjct: 669 ITDPTQADNPLVYVNDGFERMTGYTAEDALGRNPRFLQGADTDPEQVARLREAI 722
>gi|21231858|ref|NP_637775.1| histidine kinase [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66768015|ref|YP_242777.1| histidine kinase [Xanthomonas campestris pv. campestris str. 8004]
gi|21113578|gb|AAM41699.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str.
ATCC 33913]
gi|66573347|gb|AAY48757.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str.
8004]
Length = 540
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 70/112 (62%), Gaps = 1/112 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
T+TDP + +PIVFA+R FL+M+G++ EIIG N R QGP T+R+ + ++REAI R
Sbjct: 41 MTVTDPYLPDNPIVFANRAFLEMTGYAADEIIGNNCRFLQGPETDRQAVADVREAIDNRR 100
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S VF + G+ +F Q+ + R+ ++
Sbjct: 101 EFATEVLNYRKDGSTFWNALFVSPVF-DDTGKLVYFFGSQLDVSRRRDAEDA 151
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 50/84 (59%)
Query: 226 VCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVV 285
+ G+ +LP S + ++ + + DP+LPD P+V+A+ AFL++TGY +E++
Sbjct: 13 LIGESQTLPVSKHRSDIFFAAVETTRMPMTVTDPYLPDNPIVFANRAFLEMTGYAADEII 72
Query: 286 GQNCRFLNGVDTDTTVLYQVSIAI 309
G NCRFL G +TD + V AI
Sbjct: 73 GNNCRFLQGPETDRQAVADVREAI 96
>gi|291570657|dbj|BAI92929.1| two-component sensor histidine kinase [Arthrospira platensis
NIES-39]
Length = 1240
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 77/123 (62%), Gaps = 1/123 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ A++ P+ I++ S + I++ + GF K++G+++ E++G+N R QGP TNR +I
Sbjct: 346 LQRAIEASPNGIVISESSNNDLQIIYCNAGFEKLTGYTKEEVVGQNCRFLQGPDTNRDSI 405
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
IR AI++E+ +VNL NY+KDG+ FW +S V + G+ THF+ +Q I RK
Sbjct: 406 AIIRRAIKQEKGCKVNLKNYRKDGSCFWNELAISPVRDHQ-GKLTHFIGIQTDITERKQS 464
Query: 140 RNS 142
++
Sbjct: 465 EDA 467
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 27/36 (75%)
Query: 263 DMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
D+ ++Y + F KLTGY + EVVGQNCRFL G DT+
Sbjct: 366 DLQIIYCNAGFEKLTGYTKEEVVGQNCRFLQGPDTN 401
>gi|256032286|pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 76/121 (62%), Gaps = 3/121 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+R T+ +I
Sbjct: 16 TLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNMRFLQGPETDRATVRKI 75
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R+AI + + V L+NY K G FW LF + + ++ G +F+ VQ+ +H+R++
Sbjct: 76 RDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGVQLD--GTEHVRDA 132
Query: 143 G 143
Sbjct: 133 A 133
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 50/68 (73%)
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTV 301
SL +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+N RFL G +TD
Sbjct: 12 SLATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNMRFLQGPETDRAT 71
Query: 302 LYQVSIAI 309
+ ++ AI
Sbjct: 72 VRKIRDAI 79
>gi|448426524|ref|ZP_21583373.1| HTR-like protein [Halorubrum terrestre JCM 10247]
gi|445679404|gb|ELZ31871.1| HTR-like protein [Halorubrum terrestre JCM 10247]
Length = 596
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 72/127 (56%), Gaps = 2/127 (1%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
ALDE P TITDP+ +P+V+ + F++M+G+ R E IG N R QGP T ++ ++
Sbjct: 263 ALDEAPVGITITDPAREDNPMVYVNDRFVEMTGYDREESIGVNCRFLQGPDTEEESVQQL 322
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
REAI E V LLNY+KDGT FW ++ + DG TH+V Q I + K R +
Sbjct: 323 REAIDAEESTSVELLNYRKDGTEFWNRVSIAPICDA-DGAVTHWVGFQEDITAFKE-REA 380
Query: 143 GMSYSED 149
+ D
Sbjct: 381 ALERQND 387
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
+L + DP D PMVY +D F+++TGYDR E +G NCRFL G DT+ + Q+
Sbjct: 263 ALDEAPVGITITDPAREDNPMVYVNDRFVEMTGYDREESIGVNCRFLQGPDTEEESVQQL 322
Query: 306 SIAI 309
AI
Sbjct: 323 REAI 326
>gi|168027784|ref|XP_001766409.1| PHOTB1 phototropin B1 blue light photoreceptor [Physcomitrella
patens subsp. patens]
gi|50510315|dbj|BAD32624.1| phototropin [Physcomitrella patens]
gi|162682318|gb|EDQ68737.1| PHOTB1 phototropin B1 blue light photoreceptor [Physcomitrella
patens subsp. patens]
Length = 1133
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 74/124 (59%), Gaps = 1/124 (0%)
Query: 8 IEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGR 67
+E+S R + + L+ + +F ITDP + +PI+FAS FL+++ ++R EI+GRN R
Sbjct: 584 LERSKEIRRGIDLATTLERIAKNFVITDPRLPDNPIIFASDEFLELTEYTREEILGRNCR 643
Query: 68 MFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFV 127
QGP T+ + +IR+AI R I V LLNY K G PFW LF + DG +F+
Sbjct: 644 FLQGPDTDLAVVDQIRDAIAARRDITVQLLNYTKSGKPFWNLFHLQ-AMRDHDGELQYFI 702
Query: 128 AVQV 131
VQ+
Sbjct: 703 GVQL 706
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 75/134 (55%), Gaps = 7/134 (5%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
V EAL +F ++D + PI++AS GF M+G++ E+IGRN R QG T+ +
Sbjct: 305 VKEALSTFQQTFVVSDATQPDFPILYASAGFFNMTGYTPKEVIGRNCRFLQGAGTDNADV 364
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV----- 134
IREA++E + LLNYKKDG+ FW L ++ + +DG+ F+ +QV +
Sbjct: 365 ARIREALKEGKSFCGRLLNYKKDGSAFWNLLTITPI-KDDDGKVLKFIGMQVEVSKHTEG 423
Query: 135 -SRKHMRNSGMSYS 147
K +R +G+ S
Sbjct: 424 KKEKSLRPNGLPES 437
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 50/68 (73%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI ++FV+ DP LPD P+++ASD FL+LT Y R E++G+NCRFL G DTD V+
Sbjct: 596 LATTLERIAKNFVITDPRLPDNPIIFASDEFLELTEYTREEILGRNCRFLQGPDTDLAVV 655
Query: 303 YQVSIAIS 310
Q+ AI+
Sbjct: 656 DQIRDAIA 663
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 227 CGKRCSLP-GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVV 285
G S P + +S + +L +Q+FV+ D PD P++YAS F +TGY EV+
Sbjct: 288 AGSDASHPSNLPKVSREVKEALSTFQQTFVVSDATQPDFPILYASAGFFNMTGYTPKEVI 347
Query: 286 GQNCRFLNGVDTDTTVLYQVSIAI 309
G+NCRFL G TD + ++ A+
Sbjct: 348 GRNCRFLQGAGTDNADVARIREAL 371
>gi|409990612|ref|ZP_11273963.1| multi-sensor signal transduction histidine kinase [Arthrospira
platensis str. Paraca]
gi|409938523|gb|EKN79836.1| multi-sensor signal transduction histidine kinase [Arthrospira
platensis str. Paraca]
Length = 1240
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 77/123 (62%), Gaps = 1/123 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ A++ P+ I++ S + I++ + GF K++G+++ E++G+N R QGP TNR +I
Sbjct: 346 LQRAIEASPNGIVISESSNNDLQIIYCNAGFEKLTGYTKEEVVGQNCRFLQGPDTNRDSI 405
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
IR AI++E+ +VNL NY+KDG+ FW +S V + G+ THF+ +Q I RK
Sbjct: 406 AIIRRAIKQEKGCKVNLKNYRKDGSCFWNELAISPVRDHQ-GKLTHFIGIQTDITERKQS 464
Query: 140 RNS 142
++
Sbjct: 465 EDA 467
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 27/36 (75%)
Query: 263 DMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
D+ ++Y + F KLTGY + EVVGQNCRFL G DT+
Sbjct: 366 DLQIIYCNAGFEKLTGYTKEEVVGQNCRFLQGPDTN 401
>gi|448484317|ref|ZP_21606024.1| HTR-like protein [Halorubrum arcis JCM 13916]
gi|445820092|gb|EMA69921.1| HTR-like protein [Halorubrum arcis JCM 13916]
Length = 596
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 72/127 (56%), Gaps = 2/127 (1%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
ALDE P TITDP+ +P+V+ + F++M+G+ R E IG N R QGP T ++ ++
Sbjct: 263 ALDEAPVGITITDPAREDNPMVYVNDRFVEMTGYDREESIGVNCRFLQGPDTEEESVQQL 322
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
REAI E V LLNY+KDGT FW ++ + DG TH+V Q I + K R +
Sbjct: 323 REAIDAEESTSVELLNYRKDGTEFWNRVSIAPICDA-DGAVTHWVGFQEDITAFKE-REA 380
Query: 143 GMSYSED 149
+ D
Sbjct: 381 ALERQND 387
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
+L + DP D PMVY +D F+++TGYDR E +G NCRFL G DT+ + Q+
Sbjct: 263 ALDEAPVGITITDPAREDNPMVYVNDRFVEMTGYDREESIGVNCRFLQGPDTEEESVQQL 322
Query: 306 SIAI 309
AI
Sbjct: 323 REAI 326
>gi|427400762|ref|ZP_18892000.1| PAS domain S-box protein [Massilia timonae CCUG 45783]
gi|425720275|gb|EKU83198.1| PAS domain S-box protein [Massilia timonae CCUG 45783]
Length = 569
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 70/110 (63%), Gaps = 1/110 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
ITDP +PIVFA+ F+ ++G+ +I+GRN R QGP T+R T+ E+ A+ E+R +
Sbjct: 82 ITDPRQEDNPIVFANGAFVDLTGYPIEQILGRNCRFLQGPDTDRATVAELHRAVEEQRAV 141
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
V+++NYK DGTPFW +F +E G+ +F A Q+ I R++ + S
Sbjct: 142 AVDIVNYKADGTPFWNALFFGPIFDQE-GKLLYFFASQMDITERRNNQES 190
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP D P+V+A+ AF+ LTGY +++G+NCRFL G DTD +
Sbjct: 69 FFAAVEMTRMPMLITDPRQEDNPIVFANGAFVDLTGYPIEQILGRNCRFLQGPDTDRATV 128
Query: 303 YQVSIAIS 310
++ A+
Sbjct: 129 AELHRAVE 136
>gi|418062700|ref|ZP_12700460.1| signal transduction histidine kinase [Methylobacterium extorquens
DSM 13060]
gi|373563746|gb|EHP89914.1| signal transduction histidine kinase [Methylobacterium extorquens
DSM 13060]
Length = 492
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 90/168 (53%), Gaps = 10/168 (5%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ + +PIVFA+ F K++G++R EI+GRN R QGP TN + IR+AI PI
Sbjct: 37 VTDPNRTDNPIVFANAAFTKLTGYTRDEILGRNCRFLQGPETNPYDVARIRDAIERRVPI 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ--VPIVSRKHMRNSG-MSYSED 149
E+ LLN+KKDG FW +S VF + DG T+F A Q V + K +R G ++ ED
Sbjct: 97 EIELLNHKKDGEVFWNRLLVSPVFDR-DGALTYFFASQFDVTLERNKLVRLQGELAALED 155
Query: 150 GGGSRLREIVFGSCRREVCSDSLLDLDRV--LALDSDDTGLEIEDSCE 195
R E+ R L R+ LD D LE D C+
Sbjct: 156 EVARRKAELARTDDRMRFA----LKAGRIGSWTLDLADRRLEASDICK 199
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 41/59 (69%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ ++ DP+ D P+V+A+ AF KLTGY R+E++G+NCRFL G +T+ + ++ AI
Sbjct: 32 RMPMLVTDPNRTDNPIVFANAAFTKLTGYTRDEILGRNCRFLQGPETNPYDVARIRDAI 90
>gi|448397476|ref|ZP_21569509.1| bacterio-opsin activator [Haloterrigena limicola JCM 13563]
gi|445672575|gb|ELZ25146.1| bacterio-opsin activator [Haloterrigena limicola JCM 13563]
Length = 633
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 70/116 (60%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL+E P TI+DP + +P+V+ + + +++G+ E++GRN R QG ++ I E+
Sbjct: 136 ALEEAPVGVTISDPDLDDNPLVYVNDAYEEITGYEYDEVVGRNCRFLQGEESDENAIAEM 195
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
AI E+RP+ V + NY+KDGT FW ++ V E GR TH+V Q I +RK
Sbjct: 196 AAAIDEDRPVTVEIKNYRKDGTEFWNEVTIAPVR-DEAGRVTHYVGFQNDITARKE 250
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 40/55 (72%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ DP L D P+VY +DA+ ++TGY+ +EVVG+NCRFL G ++D + +++ AI
Sbjct: 145 TISDPDLDDNPLVYVNDAYEEITGYEYDEVVGRNCRFLQGEESDENAIAEMAAAI 199
>gi|323448496|gb|EGB04394.1| hypothetical protein AURANDRAFT_9009 [Aureococcus anophagefferens]
Length = 104
Score = 98.6 bits (244), Expect = 3e-18, Method: Composition-based stats.
Identities = 45/104 (43%), Positives = 68/104 (65%), Gaps = 1/104 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
SF ITDP++ +PIVFAS GFL ++G+ +++GRN R QGPRT+ R + +IREAI+
Sbjct: 2 SFVITDPTLPDNPIVFASGGFLSLTGYKLEQVLGRNCRFLQGPRTDARAVGKIREAIKHG 61
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+++ LLNYK D T FW F ++ + G +F+ VQ+ +
Sbjct: 62 TDVQICLLNYKIDSTTFWNHFFIA-ALRDDAGDVVNFLGVQIEV 104
Score = 67.0 bits (162), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 252 QSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+SFV+ DP LPD P+V+AS FL LTGY +V+G+NCRFL G TD + ++ AI
Sbjct: 1 RSFVITDPTLPDNPIVFASGGFLSLTGYKLEQVLGRNCRFLQGPRTDARAVGKIREAI 58
>gi|284163953|ref|YP_003402232.1| PAS/PAC sensor protein [Haloterrigena turkmenica DSM 5511]
gi|284013608|gb|ADB59559.1| putative PAS/PAC sensor protein [Haloterrigena turkmenica DSM 5511]
Length = 644
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 69/116 (59%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++E P TI+DP + +P+V+ + + +++G+ E++GRN R QG + I E+
Sbjct: 142 AINEAPVGITISDPDLEDNPLVYVNDAYQEITGYGYDEVVGRNCRFLQGEDSQEVAIAEM 201
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
AI EERP+ V L NY+KDGT FW ++ V EDG TH+V Q + +RK
Sbjct: 202 AAAIDEERPVTVELKNYRKDGTEFWNEVTIAPVR-DEDGTVTHYVGFQNDVTARKE 256
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 38/56 (67%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ DP L D P+VY +DA+ ++TGY +EVVG+NCRFL G D+ + +++ AI
Sbjct: 150 ITISDPDLEDNPLVYVNDAYQEITGYGYDEVVGRNCRFLQGEDSQEVAIAEMAAAI 205
>gi|449521880|ref|XP_004167957.1| PREDICTED: LOW QUALITY PROTEIN: phototropin-1-like, partial
[Cucumis sativus]
Length = 760
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 70/108 (64%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+R T+ +IR
Sbjct: 234 LERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDRTTVKKIR 293
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AI + + V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 294 DAIDNQTDVTVQLINYTKSGKKFWNLFHLQPMRDQK-GEVQYFIGVQL 340
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 51/67 (76%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD T +
Sbjct: 230 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDRTTV 289
Query: 303 YQVSIAI 309
++ AI
Sbjct: 290 KKIRDAI 296
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Query: 67 RMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHF 126
R QG T+ + +IREA++ LLNYKKDGTPFW L +S + +DG+
Sbjct: 1 RFLQGADTDPEDVAKIREALQAGTSYCGRLLNYKKDGTPFWNLLTISPI-KDDDGKVLKL 59
Query: 127 VAVQVPIVSR------KHMRNSGMSYSEDGGGSRLREIVFGS 162
+ +QV + K +R +G+ S +R +E+ S
Sbjct: 60 IGMQVEVSKHTEGFKDKMVRPNGLPESLIRYDARQKEMATSS 101
>gi|7804485|dbj|BAA95669.1| phototropin [Adiantum capillus-veneris]
Length = 1092
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 68/109 (62%), Gaps = 1/109 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP TNR T+ I
Sbjct: 561 TLERIEKNFVITDPRLPDNPIIFASDNFLELTEYSREEILGRNCRFLQGPDTNRETVKLI 620
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
R+AI E+ + V LLNY K G FW LF + + + G +F VQ+
Sbjct: 621 RDAIDNEKEVTVQLLNYTKTGRTFWNLFHLQPMRDHK-GELQYFTGVQL 668
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 72/134 (53%), Gaps = 7/134 (5%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
V +AL+ +F I D + PI++AS GF KM+G++ +E+IGRN R QG T+ I
Sbjct: 270 VLQALEGFQQTFVIADGTKPDLPIMYASAGFFKMTGYTSSEVIGRNCRFLQGKETDPEEI 329
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI------ 133
IRE I + LLNYKKDG+ FW L +S + DG ++ +QV +
Sbjct: 330 DRIRECISKGSGYCGRLLNYKKDGSAFWNLLTISPI-KDVDGSVLKYIGMQVEVSQFTEG 388
Query: 134 VSRKHMRNSGMSYS 147
MR +G+S S
Sbjct: 389 TKENAMRPNGLSES 402
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 48/67 (71%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD FL+LT Y R E++G+NCRFL G DT+ +
Sbjct: 558 LATTLERIEKNFVITDPRLPDNPIIFASDNFLELTEYSREEILGRNCRFLQGPDTNRETV 617
Query: 303 YQVSIAI 309
+ AI
Sbjct: 618 KLIRDAI 624
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 47/72 (65%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S + +L +Q+FV+ D PD+P++YAS F K+TGY +EV+G+NCRFL G +TD
Sbjct: 266 VSKDVLQALEGFQQTFVIADGTKPDLPIMYASAGFFKMTGYTSSEVIGRNCRFLQGKETD 325
Query: 299 TTVLYQVSIAIS 310
+ ++ IS
Sbjct: 326 PEEIDRIRECIS 337
>gi|23098043|ref|NP_691509.1| protein kinase [Oceanobacillus iheyensis HTE831]
gi|22776268|dbj|BAC12544.1| protein kinase [Oceanobacillus iheyensis HTE831]
Length = 264
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 75/119 (63%), Gaps = 1/119 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL+ +TDPSI +PIV A++GFL+++G+ EIIG+N R QG T+ +I
Sbjct: 12 LEKALNYTRVGIIVTDPSIEDNPIVIANKGFLELTGYEEHEIIGKNCRFLQGKDTDNISI 71
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
++R+AI+ + PI + + NYKKDGT FW + ++ +++G+ FV VQ I + K
Sbjct: 72 KQLRDAIQNKEPITIQIYNYKKDGTGFWNELSIDHMWDEQEGKY-FFVGVQKDITNEKQ 129
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
+L + ++ DP + D P+V A+ FL+LTGY+ +E++G+NCRFL G DTD + Q+
Sbjct: 15 ALNYTRVGIIVTDPSIEDNPIVIANKGFLELTGYEEHEIIGKNCRFLQGKDTDNISIKQL 74
Query: 306 SIAIS 310
AI
Sbjct: 75 RDAIQ 79
>gi|448608055|ref|ZP_21659894.1| PAS sensor protein [Haloferax sulfurifontis ATCC BAA-897]
gi|445737097|gb|ELZ88635.1| PAS sensor protein [Haloferax sulfurifontis ATCC BAA-897]
Length = 737
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 68/115 (59%), Gaps = 1/115 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE TIT PS PIV+A+ F +++G+ EI+G N R+ QGP T+
Sbjct: 392 AIDEASVGITITGPSEDDCPIVYANAAFEELTGYDADEILGENHRVLQGPDTDEEECERF 451
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
REAI +E P + LLNY++DGTPFW +++ V G +DGR +++ Q + R
Sbjct: 452 REAIADEEPCSIELLNYRRDGTPFWNHCEITPVHG-DDGRVANYIGFQREVTERN 505
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 30/45 (66%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+ P D P+VYA+ AF +LTGYD +E++G+N R L G DTD
Sbjct: 400 ITITGPSEDDCPIVYANAAFEELTGYDADEILGENHRVLQGPDTD 444
>gi|163851076|ref|YP_001639119.1| histidine kinase [Methylobacterium extorquens PA1]
gi|218529906|ref|YP_002420722.1| histidine kinase [Methylobacterium extorquens CM4]
gi|240138210|ref|YP_002962682.1| sensor hybrid histidine kinase with PAS/PAC and response receiver
regulator receiver domains [Methylobacterium extorquens
AM1]
gi|254560770|ref|YP_003067865.1| sensor hybrid histidine kinase with PAS/PAC and response receiver
regulator receiver domains [Methylobacterium extorquens
DM4]
gi|418059761|ref|ZP_12697700.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium extorquens
DSM 13060]
gi|163662681|gb|ABY30048.1| PAS sensor protein [Methylobacterium extorquens PA1]
gi|218522209|gb|ACK82794.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium extorquens
CM4]
gi|240008179|gb|ACS39405.1| putative sensor hybrid histidine kinase with PAS/PAC and response
receiver regulator receiver domains [Methylobacterium
extorquens AM1]
gi|254268048|emb|CAX23919.1| putative sensor hybrid histidine kinase with PAS/PAC and response
receiver regulator receiver domains [Methylobacterium
extorquens DM4]
gi|373566703|gb|EHP92693.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium extorquens
DSM 13060]
Length = 541
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 68/110 (61%), Gaps = 1/110 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP +PI+FA+R F++M+G+S E+IG N R QGP T+R T+ E+R+AIRE R
Sbjct: 46 VTDPHQPDNPIIFANRAFVRMTGYSAEELIGSNCRFLQGPDTDRDTVSEVRDAIREHREF 105
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S VF + G +F Q+ + R+ S
Sbjct: 106 AAEILNYRKDGSSFWNALFVSPVFNRS-GDLVYFFGSQLDVSRRRDAEES 154
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 48/80 (60%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DPH PD P+++A+ AF+++TGY E++G NCRFL G DTD +
Sbjct: 33 FFAAVETTRMPMIVTDPHQPDNPIIFANRAFVRMTGYSAEELIGSNCRFLQGPDTDRDTV 92
Query: 303 YQVSIAISPYPKKKSIYMEY 322
+V AI + + + + Y
Sbjct: 93 SEVRDAIREHREFAAEILNY 112
>gi|449460993|ref|XP_004148228.1| PREDICTED: phototropin-1-like [Cucumis sativus]
Length = 952
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 70/108 (64%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+R T+ +IR
Sbjct: 426 LERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDRTTVKKIR 485
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AI + + V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 486 DAIDNQTDVTVQLINYTKSGKKFWNLFHLQPMRDQK-GEVQYFIGVQL 532
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 69/114 (60%), Gaps = 1/114 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL +F ++D + +PI++AS GF KM+G++ E+IGRN R QG T+ +
Sbjct: 125 LKDALSTFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPEDV 184
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+IREA++ LLNYKKDGTPFW L +S + +DG+ + +QV +
Sbjct: 185 AKIREALQAGTSYCGRLLNYKKDGTPFWNLLTISPI-KDDDGKVLKLIGMQVEV 237
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 51/67 (76%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD T +
Sbjct: 422 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDRTTV 481
Query: 303 YQVSIAI 309
++ AI
Sbjct: 482 KKIRDAI 488
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 47/75 (62%)
Query: 235 GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG 294
G+ +S L +L +Q+FV+ D PD P++YAS F K+TGY EV+G+NCRFL G
Sbjct: 117 GIPRVSEDLKDALSTFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFLQG 176
Query: 295 VDTDTTVLYQVSIAI 309
DTD + ++ A+
Sbjct: 177 ADTDPEDVAKIREAL 191
>gi|344211764|ref|YP_004796084.1| HTR-like protein [Haloarcula hispanica ATCC 33960]
gi|343783119|gb|AEM57096.1| HTR-like protein [Haloarcula hispanica ATCC 33960]
Length = 748
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 121/259 (46%), Gaps = 28/259 (10%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ A+DE P TIT P +PI +A+R FL+++G++ +E+ GRN R QG T +
Sbjct: 257 IKRAMDEAPVGITITSPEQDDNPITYANRQFLELTGYTESEVYGRNCRFLQGEETESEPV 316
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
+R AI + P+ V L NY+KDGT FW ++ V +DG ++V Q I RK
Sbjct: 317 DAMRAAIDADEPVSVELRNYRKDGTMFWNQVTIAPVR-DDDGTVVNYVGFQQDITERKEH 375
Query: 140 RNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIEDSCEASDL 199
+ + SE ++ ++ R EV + VL L+++ L E L
Sbjct: 376 EHRLRALSE-----SVQNLLQADTREEVAEIGVDTACTVLGLEANTIHLYDEGD---RTL 427
Query: 200 EKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDP 259
E A+ AI ++L L ++ PG G I+ +Y S + V DP
Sbjct: 428 EPVAASDAIYDLLDDLPTFT--------------PG-GSIAWRVYESGDALAVDDVHADP 472
Query: 260 HL--PDMPMVYASDAFLKL 276
+ PD P+ S+ +L L
Sbjct: 473 DIYNPDTPI--KSELYLPL 489
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 7/70 (10%)
Query: 247 LGRIKQSF-------VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
L RIK++ + P D P+ YA+ FL+LTGY +EV G+NCRFL G +T++
Sbjct: 254 LSRIKRAMDEAPVGITITSPEQDDNPITYANRQFLELTGYTESEVYGRNCRFLQGEETES 313
Query: 300 TVLYQVSIAI 309
+ + AI
Sbjct: 314 EPVDAMRAAI 323
>gi|161367346|gb|ABX71079.1| putative phototropin [synthetic construct]
Length = 115
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 66/108 (61%), Gaps = 1/108 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+FT+ D + PIV+AS GFL+M+G++ AE+IG N R QG +TN+ + E+REAI+
Sbjct: 6 TFTVCDATKPDCPIVYASDGFLRMTGYAAAEVIGYNCRFLQGEKTNKNDVRELREAIKNG 65
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
V LLNYKKDGTPFW ++ V DG ++ VQ + K
Sbjct: 66 DRWSVRLLNYKKDGTPFWNYLVVAPV-KLADGTVVKYIGVQTDVTEVK 112
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 38/62 (61%)
Query: 248 GRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSI 307
G +F + D PD P+VYASD FL++TGY EV+G NCRFL G T+ + ++
Sbjct: 1 GAFDHTFTVCDATKPDCPIVYASDGFLRMTGYAAAEVIGYNCRFLQGEKTNKNDVRELRE 60
Query: 308 AI 309
AI
Sbjct: 61 AI 62
>gi|357167375|ref|XP_003581132.1| PREDICTED: phototropin-2-like [Brachypodium distachyon]
Length = 909
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 73/108 (67%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ ++R EI+GRN R QG T++ T+ +IR
Sbjct: 388 LERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGAETDQTTVDKIR 447
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AIRE++ + V L+NY K G FW LF + ++ ++ G +F+ VQ+
Sbjct: 448 DAIREQKEVTVQLINYTKSGKKFWNLFHLQPMWDQK-GELQYFIGVQL 494
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 81/139 (58%), Gaps = 7/139 (5%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + +AL L +F ++D + PI++AS GF M+G+S EIIGRN R QG T
Sbjct: 102 RVSQELKDALSNLQQTFVVSDATRPDCPIIYASAGFYTMTGYSAKEIIGRNCRFLQGAET 161
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI- 133
+++ + +IR+A++ + LLNY+KDGTPFW L ++ + + G+ F+ +QV +
Sbjct: 162 DQKEVSKIRDAVKAGKSFCGRLLNYRKDGTPFWNLLTVTPIR-DDQGKVIKFIGMQVEVS 220
Query: 134 -----VSRKHMRNSGMSYS 147
+S K MR + M S
Sbjct: 221 KYTEGLSDKCMRPNEMPVS 239
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 51/67 (76%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD T +
Sbjct: 384 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGAETDQTTV 443
Query: 303 YQVSIAI 309
++ AI
Sbjct: 444 DKIRDAI 450
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%)
Query: 230 RCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNC 289
R S + +S L +L ++Q+FV+ D PD P++YAS F +TGY E++G+NC
Sbjct: 94 RASYDSLPRVSQELKDALSNLQQTFVVSDATRPDCPIIYASAGFYTMTGYSAKEIIGRNC 153
Query: 290 RFLNGVDTDTTVLYQVSIAI 309
RFL G +TD + ++ A+
Sbjct: 154 RFLQGAETDQKEVSKIRDAV 173
>gi|357517333|ref|XP_003628955.1| Phototropin [Medicago truncatula]
gi|355522977|gb|AET03431.1| Phototropin [Medicago truncatula]
Length = 941
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 101/188 (53%), Gaps = 11/188 (5%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + +AL L +F ++D + PI++AS GF M+G+S E+IGRN R QGP T
Sbjct: 113 RVSQELKDALSTLQQTFVVSDATKPDCPILYASSGFFSMTGYSSKEVIGRNCRFLQGPET 172
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPI 133
++ + +IR+A + + LLNYKK+GTPFW L ++ + K+D G F+ +QV +
Sbjct: 173 DQNEVAKIRDATKNGKSYCGRLLNYKKNGTPFWNLLTVTPI--KDDRGNTIKFIGMQVEV 230
Query: 134 ------VSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTG 187
V+ K +R +G+ S +R +E GS V ++ + ++ +DDT
Sbjct: 231 SKYTEGVNEKALRPNGLPKSLIRYDARQKEEAMGSITEVV--QTVRNPKSIIRSKNDDTA 288
Query: 188 LEIEDSCE 195
+ + E
Sbjct: 289 TIMHEEPE 296
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 71/109 (65%), Gaps = 1/109 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
L+ + +F I+DP + PI+FAS FL+++ ++R EI+GRN R QGP T++ T+ I
Sbjct: 405 TLERIEKNFVISDPRLPDCPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQATVNRI 464
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
R+AI+++R I V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 465 RDAIKDQREITVQLINYTKSGKKFWNLFHLQPMRDQK-GELQYFIGVQL 512
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 50/67 (74%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 402 LATTLERIEKNFVISDPRLPDCPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQATV 461
Query: 303 YQVSIAI 309
++ AI
Sbjct: 462 NRIRDAI 468
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 219 SQLTGRLVCGKRCSLPGM-GFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLT 277
++ +G G L G+ +S L +L ++Q+FV+ D PD P++YAS F +T
Sbjct: 93 TRTSGESNYGSEAKLSGLFPRVSQELKDALSTLQQTFVVSDATKPDCPILYASSGFFSMT 152
Query: 278 GYDRNEVVGQNCRFLNGVDTDTTVLYQVSIA 308
GY EV+G+NCRFL G +TD + ++ A
Sbjct: 153 GYSSKEVIGRNCRFLQGPETDQNEVAKIRDA 183
>gi|253750642|gb|ACT35017.1| phytochrome 3 [Coniogramme intermedia var. glabra]
Length = 1443
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 70/107 (65%), Gaps = 1/107 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + SF ITDP + +PI+FAS FL+++ +SR E++G N R QG T+R+ + IR
Sbjct: 940 LERIGHSFVITDPRLLDNPIIFASDQFLELTEYSREEVLGENCRFLQGRDTDRKAVQLIR 999
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
+A++E R + V LLNYK+ G PFW LF + + K+ G +F+ VQ
Sbjct: 1000 DAVKEGRDMTVQLLNYKRSGKPFWNLFHLQAMKDKK-GNLQYFIGVQ 1045
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 59/107 (55%), Gaps = 5/107 (4%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
SF + D PI+FAS GF ++G+S E+IG N R QGP TN I IR+A+ +
Sbjct: 676 SFVVVDALKPDLPIIFASTGFFNLTGYSAREVIGGNCRFLQGPDTNPAVIASIRQALAPQ 735
Query: 90 RPIEV--NLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPI 133
LLNY+KDG+ FW L ++ + K+D G V VQ+ +
Sbjct: 736 GTGTFCGRLLNYRKDGSNFWNLLTIAPI--KDDSGTIVKLVGVQLEV 780
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 45/67 (67%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI SFV+ DP L D P+++ASD FL+LT Y R EV+G+NCRFL G DTD +
Sbjct: 936 LATTLERIGHSFVITDPRLLDNPIIFASDQFLELTEYSREEVLGENCRFLQGRDTDRKAV 995
Query: 303 YQVSIAI 309
+ A+
Sbjct: 996 QLIRDAV 1002
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 41/61 (67%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
+ SFV++D PD+P+++AS F LTGY EV+G NCRFL G DT+ V+ + A++
Sbjct: 674 QTSFVVVDALKPDLPIIFASTGFFNLTGYSAREVIGGNCRFLQGPDTNPAVIASIRQALA 733
Query: 311 P 311
P
Sbjct: 734 P 734
>gi|149286420|gb|ABR23225.1| hisactophilin C49S mutant/phototropin PHY3 fusion protein
[Expression vector pNCO-HISACT-(C49S)-ASLOV2-syn]
Length = 288
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 76/120 (63%), Gaps = 3/120 (2%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+R T+ +IR
Sbjct: 137 LERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKIR 196
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143
+AI + + V L+NY K G FW LF + + ++ G +F+ VQ+ +H+R++
Sbjct: 197 DAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGVQLD--GTEHVRDAA 253
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 51/70 (72%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD
Sbjct: 130 SEFLATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDR 189
Query: 300 TVLYQVSIAI 309
+ ++ AI
Sbjct: 190 ATVRKIRDAI 199
>gi|448433144|ref|ZP_21585814.1| HTR-like protein [Halorubrum tebenquichense DSM 14210]
gi|445686546|gb|ELZ38863.1| HTR-like protein [Halorubrum tebenquichense DSM 14210]
Length = 1102
Score = 97.8 bits (242), Expect = 5e-18, Method: Composition-based stats.
Identities = 50/126 (39%), Positives = 71/126 (56%), Gaps = 1/126 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
ALDE P TITDP +P+V+ + F++M+G+ R E IG N R QGP T ++ ++
Sbjct: 263 ALDEAPVGITITDPQQDDNPMVYVNDRFVEMTGYDREESIGVNCRFLQGPDTEEASVQQL 322
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R+AI + P V LLNY+KDGT FW ++ + DG TH+V Q I + K
Sbjct: 323 RDAIDADEPTSVELLNYRKDGTEFWNRVSIAPI-SDADGTVTHWVGFQEDITAFKERARG 381
Query: 143 GMSYSE 148
G +E
Sbjct: 382 GARTAE 387
Score = 61.2 bits (147), Expect = 6e-07, Method: Composition-based stats.
Identities = 27/54 (50%), Positives = 36/54 (66%)
Query: 256 LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ DP D PMVY +D F+++TGYDR E +G NCRFL G DT+ + Q+ AI
Sbjct: 273 ITDPQQDDNPMVYVNDRFVEMTGYDREESIGVNCRFLQGPDTEEASVQQLRDAI 326
>gi|393720787|ref|ZP_10340714.1| multi-sensor hybrid histidine kinase [Sphingomonas echinoides ATCC
14820]
Length = 870
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 71/109 (65%), Gaps = 2/109 (1%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
IT+P + +P+VFA+ F ++SG+ R EI+GRN R QGP++N T+ IREA+ P+
Sbjct: 57 ITNPRLPDNPVVFANNAFCRLSGYPRDEILGRNCRFLQGPKSNPATVRRIREAVERVEPL 116
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI-VSRKHMR 140
E+++LN++KDG FW M+ VF E G +F A QV + + R+ ++
Sbjct: 117 EIDILNHRKDGETFWNRLLMAPVFDTE-GVLAYFFASQVDVTIERERLK 164
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 42/59 (71%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ ++ +P LPD P+V+A++AF +L+GY R+E++G+NCRFL G ++ + ++ A+
Sbjct: 52 RMPMIITNPRLPDNPVVFANNAFCRLSGYPRDEILGRNCRFLQGPKSNPATVRRIREAV 110
>gi|428303722|ref|YP_007140547.1| multi-sensor signal transduction histidine kinase [Crinalium
epipsammum PCC 9333]
gi|428245257|gb|AFZ11037.1| multi-sensor signal transduction histidine kinase [Crinalium
epipsammum PCC 9333]
Length = 973
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 73/121 (60%), Gaps = 1/121 (0%)
Query: 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNR 76
L + +A+ + D ITDP +PI++ + F K++G++ +I+G N R QG T+
Sbjct: 64 NLQLGQAVISVSDGIIITDPHQPNNPIIYINPAFTKITGYTAQDILGENCRCLQGKETDP 123
Query: 77 RTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+ I IREAI ++ P++V LLNY+KDG PFW K+S VF ++ +F+ +Q I R
Sbjct: 124 QAIELIREAISKKEPVQVTLLNYRKDGQPFWNELKISPVFSDQEN-LLYFIGIQTDITER 182
Query: 137 K 137
K
Sbjct: 183 K 183
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 38/61 (62%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ ++ DPH P+ P++Y + AF K+TGY +++G+NCR L G +TD + + AI
Sbjct: 74 VSDGIIITDPHQPNNPIIYINPAFTKITGYTAQDILGENCRCLQGKETDPQAIELIREAI 133
Query: 310 S 310
S
Sbjct: 134 S 134
>gi|448589464|ref|ZP_21649623.1| bacterio-opsin activator [Haloferax elongans ATCC BAA-1513]
gi|445735892|gb|ELZ87440.1| bacterio-opsin activator [Haloferax elongans ATCC BAA-1513]
Length = 661
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 70/125 (56%), Gaps = 1/125 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P TI+D S+ HP+V+A+ F M+G++ E +GRN R QG +TN+ + E+
Sbjct: 136 AMDEAPVGITISDGSLPDHPLVYANDAFESMTGYTVEEALGRNCRYLQGNKTNQERVAEL 195
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R AI E V LLNY++ G+ FW ++ + G DG TH+V Q I R +
Sbjct: 196 RRAIDAEESASVELLNYRRGGSTFWNRVDIAPLPGP-DGSVTHYVGFQTDITERVRAEQA 254
Query: 143 GMSYS 147
Y+
Sbjct: 255 AERYA 259
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%)
Query: 258 DPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYPKKKS 317
D LPD P+VYA+DAF +TGY E +G+NCR+L G T+ + ++ AI
Sbjct: 148 DGSLPDHPLVYANDAFESMTGYTVEEALGRNCRYLQGNKTNQERVAELRRAIDAEESASV 207
Query: 318 IYMEYVR 324
+ Y R
Sbjct: 208 ELLNYRR 214
>gi|60099456|dbj|BAD89967.1| phototropin [Phaseolus vulgaris]
Length = 987
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 74/123 (60%), Gaps = 1/123 (0%)
Query: 9 EQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM 68
E+ R L + L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R
Sbjct: 444 EKQREKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRF 503
Query: 69 FQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVA 128
QGP T+ T+ +IREAI + + V L+NY K G FW LF + + ++ G +F+
Sbjct: 504 LQGPETDPATVRKIREAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GEVQYFIG 562
Query: 129 VQV 131
VQ+
Sbjct: 563 VQL 565
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 74/131 (56%), Gaps = 7/131 (5%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL +F ++D + PI++AS GF KM+G++ E+IGRN R QG T+ + +I
Sbjct: 162 ALSAFQQTFVVSDATKPDCPILYASAGFFKMTGYTSKEVIGRNCRFLQGAETDCGDVAKI 221
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI------VSR 136
REA+ + LLNYKKDGTPFW L ++ + EDG+ F+ + V + +
Sbjct: 222 REALEAGKIYCGRLLNYKKDGTPFWNLLTITPI-KDEDGKVLKFIGMLVEVSKHTEGLKE 280
Query: 137 KHMRNSGMSYS 147
K +R +G+ S
Sbjct: 281 KTLRPNGLPES 291
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 50/67 (74%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 455 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATV 514
Query: 303 YQVSIAI 309
++ AI
Sbjct: 515 RKIREAI 521
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 45/71 (63%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
IS + +L +Q+FV+ D PD P++YAS F K+TGY EV+G+NCRFL G +TD
Sbjct: 155 ISEDVMGALSAFQQTFVVSDATKPDCPILYASAGFFKMTGYTSKEVIGRNCRFLQGAETD 214
Query: 299 TTVLYQVSIAI 309
+ ++ A+
Sbjct: 215 CGDVAKIREAL 225
>gi|448463216|ref|ZP_21597994.1| pas domain s-box [Halorubrum kocurii JCM 14978]
gi|445817211|gb|EMA67087.1| pas domain s-box [Halorubrum kocurii JCM 14978]
Length = 607
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 69/116 (59%), Gaps = 2/116 (1%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
ALDE P TITDPS+ +P+V+ + F++M+G+ R + +G N R QG T+ T+ +
Sbjct: 263 ALDEAPVGITITDPSLPDNPMVYVNDRFVEMTGYDREDAVGVNCRFLQGEDTDPETVDRL 322
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
REAI E P V LLNY+KDG PFW ++ + EDG + +V Q I + K
Sbjct: 323 REAIDAEEPASVELLNYRKDGAPFWNRVSVAPIC--EDGSVSEWVGFQEDITAFKR 376
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 40/64 (62%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
+L + DP LPD PMVY +D F+++TGYDR + VG NCRFL G DTD + ++
Sbjct: 263 ALDEAPVGITITDPSLPDNPMVYVNDRFVEMTGYDREDAVGVNCRFLQGEDTDPETVDRL 322
Query: 306 SIAI 309
AI
Sbjct: 323 REAI 326
>gi|448621003|ref|ZP_21668080.1| PAS sensor protein [Haloferax denitrificans ATCC 35960]
gi|445756053|gb|EMA07429.1| PAS sensor protein [Haloferax denitrificans ATCC 35960]
Length = 719
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 68/115 (59%), Gaps = 1/115 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE TIT PS PIV+A+ F +++G+ EI+G N R+ QGP T+
Sbjct: 374 AIDEASVGITITGPSEDDCPIVYANAAFEELTGYDTDEILGENHRVLQGPDTDEAECERF 433
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
REAI +E P + LLNY++DGTPFW +++ V G +DGR +++ Q + R
Sbjct: 434 REAIADEEPCSIELLNYRRDGTPFWNHCEITPVHG-DDGRVANYIGFQREVTERN 487
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
+ P D P+VYA+ AF +LTGYD +E++G+N R L G DTD + AI+
Sbjct: 382 ITITGPSEDDCPIVYANAAFEELTGYDTDEILGENHRVLQGPDTDEAECERFREAIA 438
>gi|420250294|ref|ZP_14753516.1| PAS domain S-box [Burkholderia sp. BT03]
gi|398061555|gb|EJL53345.1| PAS domain S-box [Burkholderia sp. BT03]
Length = 533
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 68/112 (60%), Gaps = 1/112 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
+TDP++ +P++FA+ FL+M+G+ EIIG N R QGP T+R TI E+R+A+ R
Sbjct: 36 MVVTDPNLPDNPVIFANHAFLRMTGYELPEIIGTNCRFLQGPETDRATIDEVRDAVAHRR 95
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
I +LNY+KDG+ FW +S VF E G +F Q+ + R+ ++
Sbjct: 96 EIATEVLNYRKDGSTFWNALFISPVF-NEQGELVYFFGSQLDVSRRRDAEDA 146
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 46/68 (67%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + V+ DP+LPD P+++A+ AFL++TGY+ E++G NCRFL G +TD +
Sbjct: 25 FFAAVSTTRMPMVVTDPNLPDNPVIFANHAFLRMTGYELPEIIGTNCRFLQGPETDRATI 84
Query: 303 YQVSIAIS 310
+V A++
Sbjct: 85 DEVRDAVA 92
>gi|356558407|ref|XP_003547498.1| PREDICTED: phototropin-1-like [Glycine max]
Length = 978
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 74/123 (60%), Gaps = 1/123 (0%)
Query: 9 EQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM 68
E+ R L + L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R
Sbjct: 439 EKQREKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRF 498
Query: 69 FQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVA 128
QGP T+ T+ +IREAI + + V L+NY K G FW LF + + ++ G +F+
Sbjct: 499 LQGPETDPATVRKIREAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GEVQYFIG 557
Query: 129 VQV 131
VQ+
Sbjct: 558 VQL 560
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 72/120 (60%), Gaps = 3/120 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL +F ++D + +PI++AS GF KM+G++ E+IGRN R QG T+ + +I
Sbjct: 159 ALSAFQQTFVVSDATKPDYPILYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPEDVAKI 218
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
REA++ + LLNYKKDGTPFW L +S + EDG+ F+ +QV + KH S
Sbjct: 219 REALQSGKIYCGRLLNYKKDGTPFWNLLTISPI-KDEDGKVLKFIGMQVEVS--KHTEGS 275
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 50/67 (74%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 450 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATV 509
Query: 303 YQVSIAI 309
++ AI
Sbjct: 510 RKIREAI 516
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 45/71 (63%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
IS + +L +Q+FV+ D PD P++YAS F K+TGY EV+G+NCRFL G DTD
Sbjct: 152 ISEDVMGALSAFQQTFVVSDATKPDYPILYASAGFFKMTGYTSKEVIGRNCRFLQGADTD 211
Query: 299 TTVLYQVSIAI 309
+ ++ A+
Sbjct: 212 PEDVAKIREAL 222
>gi|435846163|ref|YP_007308413.1| PAS/PAC sensor hybrid histidine kinase [Natronococcus occultus SP4]
gi|433672431|gb|AGB36623.1| PAS/PAC sensor hybrid histidine kinase [Natronococcus occultus SP4]
Length = 634
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 70/117 (59%), Gaps = 2/117 (1%)
Query: 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
+A+DE P ITDPS +PI +A++GF++++G+ R E +GRN R QG T + +
Sbjct: 27 EQAMDEAPVGILITDPSQPDNPITYANQGFVRLTGYPREEAVGRNCRFLQGDETAQEPVD 86
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+R AI + V LLNY++DG PFW ++ +F ++ THFV +Q + RK
Sbjct: 87 RMRTAIDAGERVTVELLNYRRDGEPFWNRVTVAPLFDGDE--LTHFVGIQQDVTERK 141
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYP 313
++ DP PD P+ YA+ F++LTGY R E VG+NCRFL G +T + ++ AI
Sbjct: 37 ILITDPSQPDNPITYANQGFVRLTGYPREEAVGRNCRFLQGDETAQEPVDRMRTAIDAGE 96
Query: 314 KKKSIYMEYVR 324
+ + Y R
Sbjct: 97 RVTVELLNYRR 107
>gi|390573573|ref|ZP_10253744.1| histidine kinase [Burkholderia terrae BS001]
gi|389934568|gb|EIM96525.1| histidine kinase [Burkholderia terrae BS001]
Length = 192
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP++ +P++FA+ FL+M+G+ EIIG N R QGP T+R TI E+R+A+ R I
Sbjct: 38 VTDPNLPDNPVIFANHAFLRMTGYELQEIIGTNCRFLQGPETDRATIDEVRDAVAHRREI 97
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+LNY+KDG+ FW +S VF E G +F Q+ + R+
Sbjct: 98 ATEILNYRKDGSTFWNALFVSPVF-NEQGELVYFFGSQLDVSRRR 141
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 46/68 (67%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + V+ DP+LPD P+++A+ AFL++TGY+ E++G NCRFL G +TD +
Sbjct: 25 FFAAVSTTRMPMVVTDPNLPDNPVIFANHAFLRMTGYELQEIIGTNCRFLQGPETDRATI 84
Query: 303 YQVSIAIS 310
+V A++
Sbjct: 85 DEVRDAVA 92
>gi|310639274|ref|YP_003944033.1| signal transduction histidine kinase [Ketogulonicigenium vulgare
Y25]
gi|385235391|ref|YP_005796731.1| putative sensory transduction histidine kinase of the HWE family
protein [Ketogulonicigenium vulgare WSH-001]
gi|308752850|gb|ADO43994.1| signal transduction histidine kinase [Ketogulonicigenium vulgare
Y25]
gi|343464086|gb|AEM42520.1| putative sensory transduction histidine kinase of the HWE family
protein [Ketogulonicigenium vulgare WSH-001]
Length = 483
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 68/111 (61%), Gaps = 1/111 (0%)
Query: 28 PDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIR 87
P +TDP +PIVF + F ++G+ R ++IGRN R QGP TNR I +R AI
Sbjct: 30 PMPMLVTDPRRPDNPIVFVNAAFCALTGYERDDVIGRNCRFLQGPGTNRGDIARLRTAIA 89
Query: 88 EERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
+ +PIE++LLNY+KDG+ FW +S VF DG+A +F A Q I ++
Sbjct: 90 DRQPIELDLLNYRKDGSSFWNRLVVSPVFAG-DGQALYFTASQFDISPERN 139
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 225 LVCGKRCSLP---GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDR 281
++ G + P G F + +I+ ++ DP PD P+V+ + AF LTGY+R
Sbjct: 1 MMSGTQAVQPESLGREFEGNPFFIAALATPMPMLVTDPRRPDNPIVFVNAAFCALTGYER 60
Query: 282 NEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
++V+G+NCRFL G T+ + ++ AI+
Sbjct: 61 DDVIGRNCRFLQGPGTNRGDIARLRTAIA 89
>gi|323450917|gb|EGB06796.1| hypothetical protein AURANDRAFT_28731 [Aureococcus anophagefferens]
Length = 143
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 67/101 (66%), Gaps = 1/101 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+F +T+P + +PIV+ S FL+M+G+ R ++IGRN R QGPRT+ R + IR+A+ +E
Sbjct: 11 AFVVTNPELPDNPIVWTSEAFLQMTGYDRDDVIGRNCRFLQGPRTDPRQVSVIRDAVYKE 70
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
V +LNY+KDGT FW F ++ + E G+ T FV VQ
Sbjct: 71 HEASVTILNYRKDGTTFWNRFFVAPLRDAE-GKVTFFVGVQ 110
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 51/72 (70%), Gaps = 9/72 (12%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
+++FV+ +P LPD P+V+ S+AFL++TGYDR++V+G+NCRFL G TD QVS+
Sbjct: 9 QKAFVVTNPELPDNPIVWTSEAFLQMTGYDRDDVIGRNCRFLQGPRTDP---RQVSVI-- 63
Query: 311 PYPKKKSIYMEY 322
+ ++Y E+
Sbjct: 64 ----RDAVYKEH 71
>gi|2754823|gb|AAC05083.1| NPH1-1 [Avena sativa]
Length = 923
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 76/120 (63%), Gaps = 3/120 (2%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+R T+ +IR
Sbjct: 408 LERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKIR 467
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143
+AI + + V L+NY K G FW LF + + ++ G +F+ VQ + +H+R++
Sbjct: 468 DAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGVQ--LDGTEHVRDAA 524
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL +F ++D S GHPI++AS GF M+G++ E++GRN R QG T+ I +I
Sbjct: 130 ALSAFQQTFVVSDASRPGHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDPAEIAKI 189
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
R+A+ +LNYKKDGT FW L ++ + E+GR F+ +QV +
Sbjct: 190 RQALANGSNYCGRVLNYKKDGTAFWNLLTIAPI-KDEEGRVLKFIGMQVEV 239
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 50/67 (74%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 404 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATV 463
Query: 303 YQVSIAI 309
++ AI
Sbjct: 464 RKIRDAI 470
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L +Q+FV+ D P P++YAS F +TGY EVVG+NCRFL G TD
Sbjct: 123 VSEELRAALSAFQQTFVVSDASRPGHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTD 182
Query: 299 TTVLYQVSIAIS 310
+ ++ A++
Sbjct: 183 PAEIAKIRQALA 194
>gi|2754825|gb|AAC05084.1| NPH1-2 [Avena sativa]
Length = 927
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 76/120 (63%), Gaps = 3/120 (2%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+R T+ +IR
Sbjct: 411 LERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKIR 470
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143
+AI + + V L+NY K G FW LF + + ++ G +F+ VQ + +H+R++
Sbjct: 471 DAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGVQ--LDGTEHVRDAA 527
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 67/111 (60%), Gaps = 1/111 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL +F ++D S GHPI++AS GF M+G++ E++GRN R QG T+ I +I
Sbjct: 133 ALSAFQQTFVVSDASRPGHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDPAEIAKI 192
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
R+A+ + +LNYKKDGT FW L ++ + E+GR F+ +QV +
Sbjct: 193 RQALADGSNYCGRVLNYKKDGTAFWNLLTIAPI-KDEEGRVLKFIGMQVEV 242
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 50/67 (74%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 407 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATV 466
Query: 303 YQVSIAI 309
++ AI
Sbjct: 467 RKIRDAI 473
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L +Q+FV+ D P P++YAS F +TGY EVVG+NCRFL G TD
Sbjct: 126 VSEELRAALSAFQQTFVVSDASRPGHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTD 185
Query: 299 TTVLYQVSIAIS 310
+ ++ A++
Sbjct: 186 PAEIAKIRQALA 197
>gi|326508020|dbj|BAJ86753.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 919
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 76/120 (63%), Gaps = 3/120 (2%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+R T+ +IR
Sbjct: 404 LERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKIR 463
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143
+AI + + V L+NY K G FW LF + + ++ G +F+ VQ + +H+R++
Sbjct: 464 DAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGVQ--LDGTEHVRDAA 520
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 67/111 (60%), Gaps = 1/111 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL +F ++D S GHPI++AS GF M+G++ E++GRN R QG T+ I +I
Sbjct: 126 ALSAFQQTFVVSDASRPGHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDPAEIAKI 185
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
R+A+ + +LNYKKDGT FW L ++ + EDGR F+ +QV +
Sbjct: 186 RQALADGSNYCGRVLNYKKDGTAFWNLLTIAPI-KDEDGRVLKFIGMQVEV 235
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 50/67 (74%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 400 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATV 459
Query: 303 YQVSIAI 309
++ AI
Sbjct: 460 RKIRDAI 466
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 235 GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG 294
G+ +S L +L +Q+FV+ D P P++YAS F +TGY EVVG+NCRFL G
Sbjct: 115 GIPRVSEELRAALSAFQQTFVVSDASRPGHPIMYASAGFFNMTGYTSKEVVGRNCRFLQG 174
Query: 295 VDTDTTVLYQVSIAIS 310
TD + ++ A++
Sbjct: 175 SGTDPAEIAKIRQALA 190
>gi|448327694|ref|ZP_21517016.1| bacterio-opsin activator [Natrinema versiforme JCM 10478]
gi|445617323|gb|ELY70921.1| bacterio-opsin activator [Natrinema versiforme JCM 10478]
Length = 631
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 70/117 (59%), Gaps = 1/117 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++E P TI+DP +P+V+ + + +++G+ +++GRN R QGP ++ I E+
Sbjct: 134 AIEEAPVGITISDPDREDNPLVYVNEAYEEITGYQYDDVVGRNCRFLQGPDSDEDAIAEM 193
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
AI E+RPI V L NY+KDGT FW ++ + E GR T++V Q + SRK
Sbjct: 194 AAAIDEDRPITVELTNYRKDGTEFWNEVTIAPIRDDE-GRVTNYVGFQNDVTSRKEA 249
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 38/56 (67%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ DP D P+VY ++A+ ++TGY ++VVG+NCRFL G D+D + +++ AI
Sbjct: 142 ITISDPDREDNPLVYVNEAYEEITGYQYDDVVGRNCRFLQGPDSDEDAIAEMAAAI 197
>gi|242081217|ref|XP_002445377.1| hypothetical protein SORBIDRAFT_07g014860 [Sorghum bicolor]
gi|241941727|gb|EES14872.1| hypothetical protein SORBIDRAFT_07g014860 [Sorghum bicolor]
Length = 890
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 71/108 (65%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ ++R EI+GRN R QG T+ T+ +IR
Sbjct: 366 LERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGAETDMSTVDKIR 425
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
EAIRE++ I V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 426 EAIREQKEITVQLINYTKSGKKFWNLFHLQPMRDQK-GELQYFIGVQL 472
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 85/154 (55%), Gaps = 7/154 (4%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + +AL L +F ++D + PI++AS GF M+G++ +++GRN R QGP T
Sbjct: 89 RVSRELKDALSSLQQTFVVSDATRPDCPIIYASAGFYTMTGYAAKDVVGRNCRFLQGPDT 148
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI- 133
+ + +IR+A++ R LLNY+KDGTPFW + ++ + ++G+ F+ +QV +
Sbjct: 149 DMDEVAKIRDAVKTGRSFCGRLLNYRKDGTPFWNMLTVTPI-RDDNGKVIKFIGMQVEVS 207
Query: 134 -----VSRKHMRNSGMSYSEDGGGSRLREIVFGS 162
+S K MR + M S R +E S
Sbjct: 208 KYTEGLSEKRMRPNEMPVSLIHYDDRQKETAMSS 241
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 51/67 (76%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD + +
Sbjct: 362 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGAETDMSTV 421
Query: 303 YQVSIAI 309
++ AI
Sbjct: 422 DKIREAI 428
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 45/71 (63%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L ++Q+FV+ D PD P++YAS F +TGY +VVG+NCRFL G DTD
Sbjct: 90 VSRELKDALSSLQQTFVVSDATRPDCPIIYASAGFYTMTGYAAKDVVGRNCRFLQGPDTD 149
Query: 299 TTVLYQVSIAI 309
+ ++ A+
Sbjct: 150 MDEVAKIRDAV 160
>gi|319782894|ref|YP_004142370.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
gi|317168782|gb|ADV12320.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
Length = 382
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 68/109 (62%), Gaps = 1/109 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
S ITDP +PIVFA+ FL+++G+ R E++GRN R QGP+T++ + +IR AI +E
Sbjct: 39 SMIITDPRQQDNPIVFANDAFLRLTGYERHEVLGRNCRFLQGPKTDKAAVEQIRAAIEDE 98
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
+ V++LNY+KDG+ FW +S V + G F A Q+ + RK
Sbjct: 99 TDVSVDILNYRKDGSTFWNALYISPV-SNDKGDLQFFFASQLDVSDRKQ 146
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 54/92 (58%), Gaps = 11/92 (11%)
Query: 229 KRCSLPGMGF-ISSSLYISLGR----------IKQSFVLIDPHLPDMPMVYASDAFLKLT 277
KR P + ++ L++ G+ + S ++ DP D P+V+A+DAFL+LT
Sbjct: 4 KRTREPADAWHMTDDLHVEHGKGDPFAAAIRATRMSMIITDPRQQDNPIVFANDAFLRLT 63
Query: 278 GYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
GY+R+EV+G+NCRFL G TD + Q+ AI
Sbjct: 64 GYERHEVLGRNCRFLQGPKTDKAAVEQIRAAI 95
>gi|383875517|pdb|3UE6|A Chain A, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
gi|383875518|pdb|3UE6|B Chain B, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
gi|383875519|pdb|3UE6|C Chain C, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
gi|383875520|pdb|3UE6|D Chain D, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
gi|383875521|pdb|3UE6|E Chain E, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
gi|383875522|pdb|3UE6|F Chain F, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
Length = 166
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 69/111 (62%), Gaps = 5/111 (4%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+AL +F ITD S+ +PIV+ASRGFL ++G+S +I+GRN R QGP T+ R + +
Sbjct: 39 KALQMAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDPRAVDK 98
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED--GRATHFVAVQ 130
IR AI + V LLNY++DGT FW LF V G D G ++V VQ
Sbjct: 99 IRNAITKGVDTSVCLLNYRQDGTTFWNLF---FVAGLRDSKGNIVNYVGVQ 146
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%)
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTV 301
SL +L +Q+FV+ D LPD P+VYAS FL LTGY ++++G+NCRFL G +TD
Sbjct: 36 SLVKALQMAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDPRA 95
Query: 302 LYQVSIAIS 310
+ ++ AI+
Sbjct: 96 VDKIRNAIT 104
>gi|383875527|pdb|3ULF|A Chain A, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
gi|383875528|pdb|3ULF|B Chain B, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
gi|383875529|pdb|3ULF|C Chain C, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
gi|383875530|pdb|3ULF|D Chain D, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
gi|383875531|pdb|3ULF|E Chain E, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
gi|383875532|pdb|3ULF|F Chain F, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
Length = 170
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 69/111 (62%), Gaps = 5/111 (4%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+AL +F ITD S+ +PIV+ASRGFL ++G+S +I+GRN R QGP T+ R + +
Sbjct: 43 KALQMAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDPRAVDK 102
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED--GRATHFVAVQ 130
IR AI + V LLNY++DGT FW LF V G D G ++V VQ
Sbjct: 103 IRNAITKGVDTSVCLLNYRQDGTTFWNLF---FVAGLRDSKGNIVNYVGVQ 150
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%)
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTV 301
SL +L +Q+FV+ D LPD P+VYAS FL LTGY ++++G+NCRFL G +TD
Sbjct: 40 SLVKALQMAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDPRA 99
Query: 302 LYQVSIAIS 310
+ ++ AI+
Sbjct: 100 VDKIRNAIT 108
>gi|448666702|ref|ZP_21685347.1| HTR-like protein [Haloarcula amylolytica JCM 13557]
gi|445771833|gb|EMA22889.1| HTR-like protein [Haloarcula amylolytica JCM 13557]
Length = 748
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 86/162 (53%), Gaps = 6/162 (3%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P TIT P +PI +A+R FL+++G++ +E++GRN R QG T + +
Sbjct: 260 AMDEAPVGITITSPEQEDNPITYANRRFLELTGYTESEVLGRNCRFLQGEETESEPVDTM 319
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R A+ E+ P+ V L NY+KDGT FW ++ V +DG + V Q I RK +
Sbjct: 320 RAAVDEDEPVSVELRNYRKDGTMFWNQVTIAPVR-DDDGTVVNHVGFQQDITERKEHEHR 378
Query: 143 GMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSD 184
+ SE +++++ R EV + VL L+++
Sbjct: 379 LKALSE-----SVQDLLQADTREEVAEIGVETARTVLGLEAN 415
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 10/82 (12%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL----------Y 303
+ P D P+ YA+ FL+LTGY +EV+G+NCRFL G +T++ +
Sbjct: 268 ITITSPEQEDNPITYANRRFLELTGYTESEVLGRNCRFLQGEETESEPVDTMRAAVDEDE 327
Query: 304 QVSIAISPYPKKKSIYMEYVRV 325
VS+ + Y K +++ V +
Sbjct: 328 PVSVELRNYRKDGTMFWNQVTI 349
>gi|448320230|ref|ZP_21509718.1| bacterio-opsin activator [Natronococcus amylolyticus DSM 10524]
gi|445606636|gb|ELY60540.1| bacterio-opsin activator [Natronococcus amylolyticus DSM 10524]
Length = 618
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 71/116 (61%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++E P TI+DP+ +P+V+ + + +++G+S +++GRN R+ QG ++ I E+
Sbjct: 123 AINEAPVGITISDPNREDNPLVYINEAYEEITGYSYEDVVGRNCRLLQGEDSDPEAIAEM 182
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
R I EERP+ V L+NY+KDGT FW ++ V DG TH+V Q + RK
Sbjct: 183 RRGIGEERPVTVELVNYRKDGTAFWNEVTIAPVRNG-DGETTHYVGFQNDVTPRKE 237
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYP 313
+ DP+ D P+VY ++A+ ++TGY +VVG+NCR L G D+D + ++ I
Sbjct: 131 ITISDPNREDNPLVYINEAYEEITGYSYEDVVGRNCRLLQGEDSDPEAIAEMRRGIG--- 187
Query: 314 KKKSIYMEYV 323
+++ + +E V
Sbjct: 188 EERPVTVELV 197
>gi|356550222|ref|XP_003543487.1| PREDICTED: phototropin-1-like [Glycine max]
Length = 982
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 74/123 (60%), Gaps = 1/123 (0%)
Query: 9 EQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM 68
E+ R L + L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R
Sbjct: 439 EKQREKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRF 498
Query: 69 FQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVA 128
QGP T+ T+ +IREAI + + V L+NY K G FW LF + + ++ G +F+
Sbjct: 499 LQGPETDPATVNKIREAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GEVQYFIG 557
Query: 129 VQV 131
VQ+
Sbjct: 558 VQL 560
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 72/120 (60%), Gaps = 3/120 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL +F ++D + + +PI++AS GF KM+G+ E+IGRN R QG T+ + +I
Sbjct: 161 ALSAFQQTFVVSDATKADYPILYASAGFFKMTGYKSKEVIGRNCRFLQGADTDPEDVAKI 220
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
REA++ + LLNYKKDGTPFW L +S + EDG+ F+ +QV + KH S
Sbjct: 221 REALQAGKIYCGRLLNYKKDGTPFWNLLTISPI-KDEDGKVLKFIGMQVEVS--KHTEGS 277
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 50/67 (74%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 450 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATV 509
Query: 303 YQVSIAI 309
++ AI
Sbjct: 510 NKIREAI 516
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
IS + +L +Q+FV+ D D P++YAS F K+TGY EV+G+NCRFL G DTD
Sbjct: 154 ISEDVMGALSAFQQTFVVSDATKADYPILYASAGFFKMTGYKSKEVIGRNCRFLQGADTD 213
Query: 299 TTVLYQVSIAI 309
+ ++ A+
Sbjct: 214 PEDVAKIREAL 224
>gi|168702420|ref|ZP_02734697.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
2246]
Length = 1013
Score = 97.1 bits (240), Expect = 9e-18, Method: Composition-based stats.
Identities = 45/119 (37%), Positives = 70/119 (58%), Gaps = 1/119 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+ + I+D HP+VFAS GF +++G++ AE++GRN + QG T+ + ++
Sbjct: 508 AIQAVTQGILISDAEHPDHPVVFASPGFERLTGYTAAEVMGRNWHLLQGRDTSAEAVAQV 567
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
R A+R P V LLNYKKDG+PFW +S V GR THF+ V + R+++ +
Sbjct: 568 RAAVRAGVPCAVELLNYKKDGSPFWSELSISPV-RDATGRLTHFIGVHTDVTRRRNLED 625
Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ Q ++ D PD P+V+AS F +LTGY EV+G+N L G DT + QV A+
Sbjct: 512 VTQGILISDAEHPDHPVVFASPGFERLTGYTAAEVMGRNWHLLQGRDTSAEAVAQVRAAV 571
>gi|398828821|ref|ZP_10587021.1| PAS domain S-box [Phyllobacterium sp. YR531]
gi|398217679|gb|EJN04196.1| PAS domain S-box [Phyllobacterium sp. YR531]
Length = 485
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
ITDPS +PIVFA+ F +++G+SR EIIGRN R QG TN + IR+A+ PI
Sbjct: 36 ITDPSQHDNPIVFANDAFSRLTGYSREEIIGRNCRFLQGTGTNDEDVTRIRDAVARREPI 95
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
E++LLNY+KDG+ FW +S VF + G +F A Q + +H
Sbjct: 96 EIDLLNYRKDGSSFWNRVLISPVF-DDTGELKYFFASQFDVSPDRH 140
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 39/57 (68%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
++ DP D P+V+A+DAF +LTGY R E++G+NCRFL G T+ + ++ A++
Sbjct: 34 MLITDPSQHDNPIVFANDAFSRLTGYSREEIIGRNCRFLQGTGTNDEDVTRIRDAVA 90
>gi|194709097|pdb|2Z6D|A Chain A, Crystal Structure Of Lov1 Domain Of Phototropin2 From
Arabidopsis Thaliana
gi|194709098|pdb|2Z6D|B Chain B, Crystal Structure Of Lov1 Domain Of Phototropin2 From
Arabidopsis Thaliana
Length = 130
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 72/120 (60%), Gaps = 3/120 (2%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + AL L +F ++D + PIV+AS GF M+G+S EI+GRN R QGP T
Sbjct: 3 RVSQELKTALSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDT 62
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPI 133
++ + +IR+ ++ + LLNYKKDGTPFW L ++ + K+D G F+ +QV +
Sbjct: 63 DKNEVAKIRDCVKNGKSYCGRLLNYKKDGTPFWNLLTVTPI--KDDQGNTIKFIGMQVEV 120
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 39/60 (65%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L ++Q+FV+ D P P+VYAS F +TGY E+VG+NCRFL G DTD
Sbjct: 4 VSQELKTALSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDTD 63
>gi|407699007|ref|YP_006823794.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii str.
'Black Sea 11']
gi|407248154|gb|AFT77339.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii str.
'Black Sea 11']
Length = 959
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 83/160 (51%), Gaps = 4/160 (2%)
Query: 9 EQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM 68
++S + + H A+DE S I+D G P+++ + F +++G+SR EIIG N R
Sbjct: 432 QRSLESHVKVLTH-AMDEATVSIIISDIKRVGQPVIYVNSAFEELTGYSREEIIGHNCRS 490
Query: 69 FQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVA 128
QG TN+ T+ +IR+A+ PIE LLNYKKDG+ F+ ++ V K +G TH++
Sbjct: 491 MQGEETNKHTVDQIRKAVATREPIETTLLNYKKDGSTFYNRLNLTPV--KINGEVTHYIG 548
Query: 129 VQVPIVSRKHMRNSGMSYSEDGGGS-RLREIVFGSCRREV 167
Q + ++ E S RL+ S E+
Sbjct: 549 FQQDVTQQRQTEQYLQEAREKAEESARLKSSFLASMSHEI 588
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 213 SVLTHYSQLTG--RLVCGKRCSLP-GMGFISSSLYISLGRIKQ----SFVLIDPHLPD-- 263
S LTH+S TG R V + SL G I +Y+ +Q S V + H D
Sbjct: 390 SELTHFSVSTGQERFVHWTKTSLADANGNIRGDIYVGSDETEQRSLESHVKVLTHAMDEA 449
Query: 264 -------------MPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
P++Y + AF +LTGY R E++G NCR + G +T+ + Q+ A++
Sbjct: 450 TVSIIISDIKRVGQPVIYVNSAFEELTGYSREEIIGHNCRSMQGEETNKHTVDQIRKAVA 509
Query: 311 PYPKKKSIYMEYVR 324
++ + Y +
Sbjct: 510 TREPIETTLLNYKK 523
>gi|452206149|ref|YP_007486271.1| receiver/sensor/bat box HTH-10 family transcription regulator Bat
(homolog to bacterioopsin activator) [Natronomonas
moolapensis 8.8.11]
gi|452082249|emb|CCQ35503.1| receiver/sensor/bat box HTH-10 family transcription regulator Bat
(homolog to bacterioopsin activator) [Natronomonas
moolapensis 8.8.11]
Length = 673
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 76/145 (52%), Gaps = 15/145 (10%)
Query: 8 IEQSFNNRYTLWVHE-------------ALDELPDSFTITDPSISGHPIVFASRGFLKMS 54
IEQ+ N + V E A+DE P TI DP P+++ + F +++
Sbjct: 117 IEQARRNHVSATVEESDPTAANLKLAELAMDEAPVGITIADPHEPDEPLIYVNEAFERLT 176
Query: 55 GFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSL 114
G+ +I+GRN R QG T+ T+ +R+A+ ER I V +LNY+K+G PFW ++
Sbjct: 177 GYDTYDILGRNCRFLQGEGTDPETVDRLRQAVDNERSISVEILNYRKNGEPFWNQLSVAP 236
Query: 115 VFGKEDGRATHFVAVQVPIVSRKHM 139
V +DG TH++ Q + RK +
Sbjct: 237 VH--DDGELTHYLGFQTDVTERKEV 259
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 44/68 (64%), Gaps = 3/68 (4%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYP 313
+ DPH PD P++Y ++AF +LTGYD +++G+NCRFL G TD + ++ A+
Sbjct: 153 ITIADPHEPDEPLIYVNEAFERLTGYDTYDILGRNCRFLQGEGTDPETVDRLRQAVD--- 209
Query: 314 KKKSIYME 321
++SI +E
Sbjct: 210 NERSISVE 217
>gi|158853253|dbj|BAF91488.1| aureochrome1 [Vaucheria frigida]
Length = 348
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 70/114 (61%), Gaps = 5/114 (4%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+AL +F ITD S+ +PIV+ASRGFL ++G+S +I+GRN R QGP T+ R + +
Sbjct: 210 KALQMAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDPRAVDK 269
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED--GRATHFVAVQVPI 133
IR AI + V LLNY++DGT FW LF V G D G ++V VQ +
Sbjct: 270 IRNAITKGVDTSVCLLNYRQDGTTFWNLF---FVAGLRDSKGNIVNYVGVQSKV 320
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%)
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTV 301
SL +L +Q+FV+ D LPD P+VYAS FL LTGY ++++G+NCRFL G +TD
Sbjct: 207 SLVKALQMAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDPRA 266
Query: 302 LYQVSIAIS 310
+ ++ AI+
Sbjct: 267 VDKIRNAIT 275
>gi|242345221|dbj|BAH80324.1| aureochrome1-like protein [Chattonella marina var. antiqua]
Length = 370
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 68/108 (62%), Gaps = 1/108 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL SF +TDPS+ +PIVFAS GFL+M+G++ ++IGRN R QGP TN ++I +I
Sbjct: 243 ALQTAQKSFVLTDPSLPDNPIVFASPGFLEMTGYTVDQVIGRNCRFLQGPDTNPKSIAKI 302
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
R AI V +LNY+ DG+ FW F +S +G+ +F+ VQ
Sbjct: 303 RRAIATGEDCSVCILNYRVDGSTFWNNFYVS-ALRDINGKVVNFIGVQ 349
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 49/69 (71%)
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTV 301
SL +L ++SFVL DP LPD P+V+AS FL++TGY ++V+G+NCRFL G DT+
Sbjct: 239 SLVTALQTAQKSFVLTDPSLPDNPIVFASPGFLEMTGYTVDQVIGRNCRFLQGPDTNPKS 298
Query: 302 LYQVSIAIS 310
+ ++ AI+
Sbjct: 299 IAKIRRAIA 307
>gi|433420630|ref|ZP_20405566.1| HTR-like protein, partial [Haloferax sp. BAB2207]
gi|432199115|gb|ELK55325.1| HTR-like protein, partial [Haloferax sp. BAB2207]
Length = 646
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 68/115 (59%), Gaps = 1/115 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P +TDPS + +PIV+ + F ++G+SR E++GRN R QG T+ + E+
Sbjct: 263 AMDEAPIGIVLTDPSQTDNPIVYVNDEFTALTGYSRDEVLGRNCRFLQGEATDEDAVAEL 322
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
R A+ E + LLNY+KDGT FW +++ +F +DG FV Q I RK
Sbjct: 323 RAAVDEREAVTTELLNYRKDGTEFWNRVRIAPLF-DDDGVIDFFVGFQDDITPRK 376
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYP 313
VL DP D P+VY +D F LTGY R+EV+G+NCRFL G TD + ++ A+
Sbjct: 271 IVLTDPSQTDNPIVYVNDEFTALTGYSRDEVLGRNCRFLQGEATDEDAVAELRAAVDERE 330
Query: 314 KKKSIYMEY 322
+ + Y
Sbjct: 331 AVTTELLNY 339
>gi|448569956|ref|ZP_21639039.1| HTR-like protein [Haloferax lucentense DSM 14919]
gi|448599646|ref|ZP_21655449.1| HTR-like protein [Haloferax alexandrinus JCM 10717]
gi|445723760|gb|ELZ75397.1| HTR-like protein [Haloferax lucentense DSM 14919]
gi|445736319|gb|ELZ87863.1| HTR-like protein [Haloferax alexandrinus JCM 10717]
Length = 725
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 68/115 (59%), Gaps = 1/115 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P +TDPS + +PIV+ + F ++G+SR E++GRN R QG T+ + E+
Sbjct: 263 AMDEAPIGIVLTDPSQTDNPIVYVNDEFTALTGYSRDEVLGRNCRFLQGEATDEDAVAEL 322
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
R A+ E + LLNY+KDGT FW +++ +F +DG FV Q I RK
Sbjct: 323 RAAVDEREAVTTELLNYRKDGTEFWNRVRIAPLF-DDDGVIDFFVGFQDDITPRK 376
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYP 313
VL DP D P+VY +D F LTGY R+EV+G+NCRFL G TD + ++ A+
Sbjct: 271 IVLTDPSQTDNPIVYVNDEFTALTGYSRDEVLGRNCRFLQGEATDEDAVAELRAAVDERE 330
Query: 314 KKKSIYMEY 322
+ + Y
Sbjct: 331 AVTTELLNY 339
>gi|384251337|gb|EIE24815.1| hypothetical protein COCSUDRAFT_46955 [Coccomyxa subellipsoidea
C-169]
Length = 1327
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 71/119 (59%), Gaps = 4/119 (3%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL L + TI DP++ P+++ + F +M+G++R EIIGRN R QGP T+ +++ I
Sbjct: 379 ALSNLNEGITIADPNLPDCPLMYVNEAFCRMTGYAREEIIGRNCRFLQGPDTDPASVVRI 438
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI---VSRKH 138
REA+ ++R + + +LNYKK+G FW L M V G F+ VQ I + RKH
Sbjct: 439 REALEQKREVSLEILNYKKNGDKFWNLLSMMPVCNAA-GAVVSFIGVQSDITELIRRKH 496
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 67/126 (53%), Gaps = 10/126 (7%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+AL ++ ITD + +PI++ + GF+K+ G++ E++GRN R QGP ++ + E
Sbjct: 242 KALAATSEATLITDAAQPDNPIIYVNSGFIKLLGYTMGEVVGRNARFMQGPDSDPEAVAE 301
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVF----------GKEDGRATHFVAVQV 131
+R+A+R R V L+N +KDG+ FW + L F G T+FV V
Sbjct: 302 LRDAVRTGRATVVELINLRKDGSRFWNQARPLLRFCPGFVSMTPIKDSSGFVTNFVGVLQ 361
Query: 132 PIVSRK 137
+ RK
Sbjct: 362 DVTERK 367
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
+L + + + DP+LPD P++Y ++AF ++TGY R E++G+NCRFL G DTD + ++
Sbjct: 379 ALSNLNEGITIADPNLPDCPLMYVNEAFCRMTGYAREEIIGRNCRFLQGPDTDPASVVRI 438
Query: 306 SIAISPYPKKKSIYMEYV 323
A+ +K+ + +E +
Sbjct: 439 REALE---QKREVSLEIL 453
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
+L ++ ++ D PD P++Y + F+KL GY EVVG+N RF+ G D+D + ++
Sbjct: 243 ALAATSEATLITDAAQPDNPIIYVNSGFIKLLGYTMGEVVGRNARFMQGPDSDPEAVAEL 302
Query: 306 SIAI 309
A+
Sbjct: 303 RDAV 306
>gi|335438286|ref|ZP_08561034.1| bacterio-opsin activator [Halorhabdus tiamatea SARL4B]
gi|334892480|gb|EGM30713.1| bacterio-opsin activator [Halorhabdus tiamatea SARL4B]
Length = 677
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 69/116 (59%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
ALDE P TI D ++ P+++ + F++M+G+ + E IG N R QG T+ T +++
Sbjct: 156 ALDEAPVGITIGDATVPDKPLIYVNDSFVEMTGYDKEEAIGVNCRFLQGEETDAETTLQL 215
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
REA+R++ + LLNY+ DG+ FW ++S + EDG T+FV Q I RK
Sbjct: 216 REAVRDQESAALELLNYRADGSTFWNNLEISPIR-DEDGNVTNFVGFQQDITERKE 270
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 36/52 (69%)
Query: 258 DPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
D +PD P++Y +D+F+++TGYD+ E +G NCRFL G +TD Q+ A+
Sbjct: 168 DATVPDKPLIYVNDSFVEMTGYDKEEAIGVNCRFLQGEETDAETTLQLREAV 219
>gi|19570333|dbj|BAA36192.2| PHY3 [Adiantum capillus-veneris]
Length = 1465
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 72/112 (64%), Gaps = 1/112 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + SF ITDP + +PI+FAS FL+++ ++R E++G N R QG T+R+ + IR
Sbjct: 924 LERIGKSFVITDPRLPDNPIIFASDRFLELTEYTREEVLGNNCRFLQGRGTDRKAVQLIR 983
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135
+A++E+R + V +LNY K G FW LF + V E+G +F+ VQ +V+
Sbjct: 984 DAVKEQRDVTVQVLNYTKGGRAFWNLFHLQ-VMRDENGDVQYFIGVQQEMVA 1034
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 45/67 (67%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI +SFV+ DP LPD P+++ASD FL+LT Y R EV+G NCRFL G TD +
Sbjct: 920 LATTLERIGKSFVITDPRLPDNPIIFASDRFLELTEYTREEVLGNNCRFLQGRGTDRKAV 979
Query: 303 YQVSIAI 309
+ A+
Sbjct: 980 QLIRDAV 986
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 10/127 (7%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88
+SF + D PI++AS GF ++G++ E+IG N R QGP TN + IREA+ +
Sbjct: 675 NSFIVVDALKPDFPIIYASTGFFNLTGYTSREVIGGNCRFLQGPDTNPADVASIREALAQ 734
Query: 89 ERPIEVN-LLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPI------VSRKHMR 140
LLNY+KDG+ FW L ++ + K+D G + VQ+ + + + R
Sbjct: 735 GTGTFCGRLLNYRKDGSSFWNLLTIAPI--KDDLGSIVKLIGVQLEVSKYTEGIRANNRR 792
Query: 141 NSGMSYS 147
+GM S
Sbjct: 793 PNGMPQS 799
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
SF+++D PD P++YAS F LTGY EV+G NCRFL G DT+ + + A++
Sbjct: 676 SFIVVDALKPDFPIIYASTGFFNLTGYTSREVIGGNCRFLQGPDTNPADVASIREALA 733
>gi|448540589|ref|ZP_21623599.1| HTR-like protein [Haloferax sp. ATCC BAA-646]
gi|445709223|gb|ELZ61055.1| HTR-like protein [Haloferax sp. ATCC BAA-646]
Length = 817
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 68/115 (59%), Gaps = 1/115 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P +TDPS + +PIV+ + F ++G+SR E++GRN R QG T+ + E+
Sbjct: 315 AMDEAPIGIVLTDPSQTDNPIVYVNDEFTTLTGYSRDEVLGRNCRFLQGEATDEDAVAEL 374
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
R A+ E + LLNY+KDGT FW +++ +F +DG FV Q I RK
Sbjct: 375 RAAVDEREAVTTELLNYRKDGTEFWNRVRIAPLF-DDDGVIDFFVGFQDDITPRK 428
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYP 313
VL DP D P+VY +D F LTGY R+EV+G+NCRFL G TD + ++ A+
Sbjct: 323 IVLTDPSQTDNPIVYVNDEFTTLTGYSRDEVLGRNCRFLQGEATDEDAVAELRAAVDERE 382
Query: 314 KKKSIYMEY 322
+ + Y
Sbjct: 383 AVTTELLNY 391
>gi|448547506|ref|ZP_21626927.1| HTR-like protein [Haloferax sp. ATCC BAA-645]
gi|445715876|gb|ELZ67628.1| HTR-like protein [Haloferax sp. ATCC BAA-645]
Length = 731
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 68/115 (59%), Gaps = 1/115 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P +TDPS + +PIV+ + F ++G+SR E++GRN R QG T+ + E+
Sbjct: 263 AMDEAPIGIVLTDPSQTDNPIVYVNDEFTTLTGYSRDEVLGRNCRFLQGEATDEDAVAEL 322
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
R A+ E + LLNY+KDGT FW +++ +F +DG FV Q I RK
Sbjct: 323 RAAVDEREAVTTELLNYRKDGTEFWNRVRIAPLF-DDDGVIDFFVGFQDDITPRK 376
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYP 313
VL DP D P+VY +D F LTGY R+EV+G+NCRFL G TD + ++ A+
Sbjct: 271 IVLTDPSQTDNPIVYVNDEFTTLTGYSRDEVLGRNCRFLQGEATDEDAVAELRAAVDERE 330
Query: 314 KKKSIYMEY 322
+ + Y
Sbjct: 331 AVTTELLNY 339
>gi|292656157|ref|YP_003536054.1| HTR-like protein [Haloferax volcanii DS2]
gi|448290154|ref|ZP_21481308.1| HTR-like protein [Haloferax volcanii DS2]
gi|291370178|gb|ADE02405.1| HTR-like protein [Haloferax volcanii DS2]
gi|445580156|gb|ELY34544.1| HTR-like protein [Haloferax volcanii DS2]
Length = 652
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 68/115 (59%), Gaps = 1/115 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P +TDPS + +PIV+ + F ++G+SR E++GRN R QG T+ + E+
Sbjct: 186 AMDEAPIGIVLTDPSQTDNPIVYVNDEFTALTGYSRDEVLGRNCRFLQGEATDEDAVAEL 245
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
R A+ E + LLNY+KDGT FW +++ +F +DG FV Q I RK
Sbjct: 246 RAAVDEREAVTTELLNYRKDGTEFWNRVRIAPLF-DDDGVIDFFVGFQDDITPRK 299
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYP 313
VL DP D P+VY +D F LTGY R+EV+G+NCRFL G TD + ++ A+
Sbjct: 194 IVLTDPSQTDNPIVYVNDEFTALTGYSRDEVLGRNCRFLQGEATDEDAVAELRAAVDERE 253
Query: 314 KKKSIYMEY 322
+ + Y
Sbjct: 254 AVTTELLNY 262
>gi|302835379|ref|XP_002949251.1| hypothetical protein VOLCADRAFT_59125 [Volvox carteri f.
nagariensis]
gi|300265553|gb|EFJ49744.1| hypothetical protein VOLCADRAFT_59125 [Volvox carteri f.
nagariensis]
Length = 108
Score = 96.7 bits (239), Expect = 1e-17, Method: Composition-based stats.
Identities = 43/104 (41%), Positives = 62/104 (59%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L + TITD S HPIV+ ++ FL M+G+SR E++GRN R QG T+ + IREA+
Sbjct: 1 LREGITITDASAPDHPIVYTNKAFLSMTGYSREEVVGRNCRFLQGRDTSPAAVRTIREAL 60
Query: 87 REERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
+P+ V LLNY +DGT FW ++ V G+ ++ VQ
Sbjct: 61 ARHQPVTVQLLNYTRDGTAFWNELRLEPVVAPYSGKLLAYIGVQ 104
Score = 63.9 bits (154), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+++ + D PD P+VY + AFL +TGY R EVVG+NCRFL G DT + + A+
Sbjct: 1 LREGITITDASAPDHPIVYTNKAFLSMTGYSREEVVGRNCRFLQGRDTSPAAVRTIREAL 60
Query: 310 SPYPKKKSIYMEYVR 324
+ + + Y R
Sbjct: 61 ARHQPVTVQLLNYTR 75
>gi|125575911|gb|EAZ17133.1| hypothetical protein OsJ_32634 [Oryza sativa Japonica Group]
Length = 853
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 70/108 (64%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ ++R EI+GRN R QGP T+R T+ +IR
Sbjct: 408 LERIEKNFVITDPRLPDNPIIFASDSFLQLTEYNREEILGRNCRFLQGPETDRATVRKIR 467
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AI + + V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 468 DAIDNQAEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGVQL 514
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL +F ++D + HPI++AS GF M+G++ E++GRN R QG T+ I +I
Sbjct: 130 ALSVFQQTFVVSDATHPNHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDPHEIDKI 189
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
R+++ +LNYKKDGTPFW L ++ + EDGR F+ +QV +
Sbjct: 190 RQSLANGSNYCGRILNYKKDGTPFWNLLTIAPI-KDEDGRLLKFIGMQVEV 239
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 51/67 (76%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y+R E++G+NCRFL G +TD +
Sbjct: 404 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYNREEILGRNCRFLQGPETDRATV 463
Query: 303 YQVSIAI 309
++ AI
Sbjct: 464 RKIRDAI 470
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 38/60 (63%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L +Q+FV+ D P+ P++YAS F +TGY EVVG+NCRFL G TD
Sbjct: 123 VSEELRAALSVFQQTFVVSDATHPNHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTD 182
>gi|325915148|ref|ZP_08177474.1| PAS domain S-box [Xanthomonas vesicatoria ATCC 35937]
gi|325538670|gb|EGD10340.1| PAS domain S-box [Xanthomonas vesicatoria ATCC 35937]
Length = 519
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 69/112 (61%), Gaps = 1/112 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
T+TDP + +PIVFA+R FL+M+G+S EIIG N R QGP T+ ++ ++RE+I + R
Sbjct: 20 MTVTDPHLPDNPIVFANRAFLEMTGYSADEIIGNNCRFLQGPETDPASVQDVRESIEQRR 79
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S VF + G +F Q+ + R+ ++
Sbjct: 80 EFATEVLNYRKDGSSFWNALFVSPVF-DDQGNLVYFFGSQLDVSRRRDAEDA 130
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 44/70 (62%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S + ++ + + DPHLPD P+V+A+ AFL++TGY +E++G NCRFL G +TD
Sbjct: 6 SDIFFAAVETTRMPMTVTDPHLPDNPIVFANRAFLEMTGYSADEIIGNNCRFLQGPETDP 65
Query: 300 TVLYQVSIAI 309
+ V +I
Sbjct: 66 ASVQDVRESI 75
>gi|188580069|ref|YP_001923514.1| signal transduction histidine kinase [Methylobacterium populi
BJ001]
gi|179343567|gb|ACB78979.1| signal transduction histidine kinase [Methylobacterium populi
BJ001]
Length = 488
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 63/98 (64%), Gaps = 1/98 (1%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
ITDP +PI+F + F K++G+SR EI+GRN R QGP T+ R + IR+AI PI
Sbjct: 37 ITDPYGPDNPIIFVNHAFTKLTGYSREEILGRNCRFLQGPETDPRDVGRIRDAIERRVPI 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
E+ LLN+KK+G FW +S VF E GR T+F A Q
Sbjct: 97 EIELLNHKKNGEVFWNRLLISPVFDDE-GRLTYFFASQ 133
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 43/70 (61%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S ++ + ++ DP+ PD P+++ + AF KLTGY R E++G+NCRFL G +TD
Sbjct: 21 SDPFAAAVKATRMPMLITDPYGPDNPIIFVNHAFTKLTGYSREEILGRNCRFLQGPETDP 80
Query: 300 TVLYQVSIAI 309
+ ++ AI
Sbjct: 81 RDVGRIRDAI 90
>gi|457693|emb|CAA82994.1| protein kinase [Mesembryanthemum crystallinum]
Length = 572
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ FSRAEI+ RN R QGP T+ T+ +IR
Sbjct: 46 LERIEKNFVITDPRLPDNPIIFASDSFLELTEFSRAEILARNRRFLQGPETDPATVAKIR 105
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AI E + V L+NY K G FW +F + + ++ G +F+ VQ+
Sbjct: 106 DAIDNETDVTVQLINYTKTGKKFWNVFHLQPMRDQK-GEVQYFIGVQL 152
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 48/67 (71%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT + R E++ +N RFL G +TD +
Sbjct: 42 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEFSRAEILARNRRFLQGPETDPATV 101
Query: 303 YQVSIAI 309
++ AI
Sbjct: 102 AKIRDAI 108
>gi|410860455|ref|YP_006975689.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii AltDE1]
gi|410817717|gb|AFV84334.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii AltDE1]
Length = 959
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 82/160 (51%), Gaps = 4/160 (2%)
Query: 9 EQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM 68
++S + + H A+DE S I+D G PI++ + F +++G++R EIIG N R
Sbjct: 432 QRSLESHVKVLTH-AMDEATVSIIISDIKRVGQPIIYVNSAFEELTGYTREEIIGHNCRS 490
Query: 69 FQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVA 128
QG TN +TI IR+AI PIE LLNYKKDGT F+ ++ V K +G TH++
Sbjct: 491 MQGEETNEKTIDCIRKAIATREPIETTLLNYKKDGTKFFNRLNLTPV--KTNGEITHYIG 548
Query: 129 VQVPIVSRKHMRNSGMSYSEDGGGS-RLREIVFGSCRREV 167
Q + ++ E S RL+ S E+
Sbjct: 549 FQQDVTQQRQTEQYLQEAREKAEESARLKSSFLASMSHEI 588
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPY 312
S ++ D P++Y + AF +LTGY R E++G NCR + G +T+ + + AI+
Sbjct: 452 SIIISDIKRVGQPIIYVNSAFEELTGYTREEIIGHNCRSMQGEETNEKTIDCIRKAIATR 511
Query: 313 PKKKSIYMEYVR 324
++ + Y +
Sbjct: 512 EPIETTLLNYKK 523
>gi|325919171|ref|ZP_08181226.1| PAS domain S-box [Xanthomonas gardneri ATCC 19865]
gi|325550341|gb|EGD21140.1| PAS domain S-box [Xanthomonas gardneri ATCC 19865]
Length = 180
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 32 TITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP 91
T+TDP + +PIVFA+R FL+M+G+S E+IG N R QGP T+ + E+R++I R
Sbjct: 4 TVTDPHLLDNPIVFANRAFLEMTGYSSEEVIGHNCRFLQGPDTDPANVNEVRDSIANRRA 63
Query: 92 IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+LNY+KDG+PFW +S VF + G +F Q+ + R+
Sbjct: 64 FATEVLNYRKDGSPFWNALFVSPVF-DDKGELVYFFGSQLDVSRRR 108
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 39/56 (69%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
+ DPHL D P+V+A+ AFL++TGY EV+G NCRFL G DTD + +V +I+
Sbjct: 4 TVTDPHLLDNPIVFANRAFLEMTGYSSEEVIGHNCRFLQGPDTDPANVNEVRDSIA 59
>gi|298708956|emb|CBJ30909.1| aureochrome 4 [Ectocarpus siliculosus]
Length = 285
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/101 (46%), Positives = 66/101 (65%), Gaps = 1/101 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+FTI+DPS+ +PIV+AS+GFL ++G++ +IGRN R QGP T+ R I IR + E
Sbjct: 149 NFTISDPSMPDNPIVYASQGFLTLTGYTIQNVIGRNCRFLQGPGTDPRAIDIIRRGVAEG 208
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
R V L+NYK DGTPFW F ++ + G+ +FV VQ
Sbjct: 209 RDTSVCLMNYKADGTPFWNQFFVA-ALRDDTGKIVNFVGVQ 248
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 38/61 (62%)
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTV 301
L +L +Q+F + DP +PD P+VYAS FL LTGY V+G+NCRFL G TD
Sbjct: 138 QLMQALMTSQQNFTISDPSMPDNPIVYASQGFLTLTGYTIQNVIGRNCRFLQGPGTDPRA 197
Query: 302 L 302
+
Sbjct: 198 I 198
>gi|219127104|ref|XP_002183783.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217405020|gb|EEC44965.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 103
Score = 96.7 bits (239), Expect = 1e-17, Method: Composition-based stats.
Identities = 45/103 (43%), Positives = 66/103 (64%), Gaps = 1/103 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
F +TDPS+ +PIV+AS+GFL ++G+S +I+GRN R QGP T+ + + IR+AI +
Sbjct: 1 FVVTDPSLPDNPIVYASQGFLNLTGYSLDQILGRNCRFLQGPETDPKAVERIRKAIEQGN 60
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+ V LLNY+ DGT FW F ++ G T+FV VQ +
Sbjct: 61 DMSVCLLNYRVDGTTFWNQFFIA-ALRDAGGNVTNFVGVQCKV 102
Score = 68.9 bits (167), Expect = 3e-09, Method: Composition-based stats.
Identities = 29/56 (51%), Positives = 40/56 (71%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
FV+ DP LPD P+VYAS FL LTGY ++++G+NCRFL G +TD + ++ AI
Sbjct: 1 FVVTDPSLPDNPIVYASQGFLNLTGYSLDQILGRNCRFLQGPETDPKAVERIRKAI 56
>gi|108863902|gb|ABG22325.1| Nonphototropic hypocotyl protein 1, putative, expressed [Oryza
sativa Japonica Group]
Length = 875
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 70/108 (64%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ ++R EI+GRN R QGP T+R T+ +IR
Sbjct: 408 LERIEKNFVITDPRLPDNPIIFASDSFLQLTEYNREEILGRNCRFLQGPETDRATVRKIR 467
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AI + + V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 468 DAIDNQAEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGVQL 514
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL +F ++D + HPI++AS GF M+G++ E++GRN R QG T+ I +I
Sbjct: 130 ALSVFQQTFVVSDATHPNHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDPHEIDKI 189
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
R+++ +LNYKKDGTPFW L ++ + EDGR F+ +QV +
Sbjct: 190 RQSLANGSNYCGRILNYKKDGTPFWNLLTIAPI-KDEDGRLLKFIGMQVEV 239
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 51/67 (76%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y+R E++G+NCRFL G +TD +
Sbjct: 404 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYNREEILGRNCRFLQGPETDRATV 463
Query: 303 YQVSIAI 309
++ AI
Sbjct: 464 RKIRDAI 470
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 38/60 (63%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L +Q+FV+ D P+ P++YAS F +TGY EVVG+NCRFL G TD
Sbjct: 123 VSEELRAALSVFQQTFVVSDATHPNHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTD 182
>gi|108862062|gb|ABG21842.1| Nonphototropic hypocotyl protein 1, putative, expressed [Oryza
sativa Japonica Group]
gi|108862063|gb|ABG21843.1| Nonphototropic hypocotyl protein 1, putative, expressed [Oryza
sativa Japonica Group]
Length = 854
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 70/108 (64%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ ++R EI+GRN R QGP T+R T+ +IR
Sbjct: 408 LERIEKNFVITDPRLPDNPIIFASDSFLQLTEYNREEILGRNCRFLQGPETDRATVRKIR 467
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AI + + V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 468 DAIDNQAEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGVQL 514
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL +F ++D + HPI++AS GF M+G++ E++GRN R QG T+ I +I
Sbjct: 130 ALSAFQQTFVVSDATHPNHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDPHEIDKI 189
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
R+++ +LNYKKDGTPFW L ++ + EDGR F+ +QV +
Sbjct: 190 RQSLANGSNYCGRILNYKKDGTPFWNLLTIAPI-KDEDGRLLKFIGMQVEV 239
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 51/67 (76%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y+R E++G+NCRFL G +TD +
Sbjct: 404 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYNREEILGRNCRFLQGPETDRATV 463
Query: 303 YQVSIAI 309
++ AI
Sbjct: 464 RKIRDAI 470
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 38/60 (63%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L +Q+FV+ D P+ P++YAS F +TGY EVVG+NCRFL G TD
Sbjct: 123 VSEELRAALSAFQQTFVVSDATHPNHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTD 182
>gi|115483707|ref|NP_001065225.1| Os11g0102200 [Oryza sativa Japonica Group]
gi|122248863|sp|Q2RBR1.2|PHT1B_ORYSJ RecName: Full=Phototropin-1B
gi|108863901|gb|ABA91098.2| Nonphototropic hypocotyl protein 1, putative, expressed [Oryza
sativa Japonica Group]
gi|113644219|dbj|BAF27360.1| Os11g0102200 [Oryza sativa Japonica Group]
Length = 921
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 70/108 (64%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ ++R EI+GRN R QGP T+R T+ +IR
Sbjct: 408 LERIEKNFVITDPRLPDNPIIFASDSFLQLTEYNREEILGRNCRFLQGPETDRATVRKIR 467
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AI + + V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 468 DAIDNQAEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGVQL 514
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL +F ++D + HPI++AS GF M+G++ E++GRN R QG T+ I +I
Sbjct: 130 ALSVFQQTFVVSDATHPNHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDPHEIDKI 189
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
R+++ +LNYKKDGTPFW L ++ + EDGR F+ +QV +
Sbjct: 190 RQSLANGSNYCGRILNYKKDGTPFWNLLTIAPI-KDEDGRLLKFIGMQVEV 239
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 51/67 (76%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y+R E++G+NCRFL G +TD +
Sbjct: 404 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYNREEILGRNCRFLQGPETDRATV 463
Query: 303 YQVSIAI 309
++ AI
Sbjct: 464 RKIRDAI 470
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 38/60 (63%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L +Q+FV+ D P+ P++YAS F +TGY EVVG+NCRFL G TD
Sbjct: 123 VSEELRAALSVFQQTFVVSDATHPNHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTD 182
>gi|218186235|gb|EEC68662.1| hypothetical protein OsI_37109 [Oryza sativa Indica Group]
Length = 921
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 70/108 (64%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ ++R EI+GRN R QGP T+R T+ +IR
Sbjct: 408 LERIEKNFVITDPRLPDNPIIFASDSFLQLTEYNREEILGRNCRFLQGPETDRATVRKIR 467
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AI + + V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 468 DAIDNQAEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGVQL 514
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL +F ++D + HPI++AS GF M+G++ E++GRN R QG T+ I +I
Sbjct: 130 ALSVFQQTFVVSDATHPNHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDPHEIDKI 189
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
R+++ +LNYKKDGTPFW L ++ + EDGR F+ +QV +
Sbjct: 190 RQSLANGSNYCGRILNYKKDGTPFWNLLTIAPI-KDEDGRLLKFIGMQVEV 239
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 51/67 (76%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y+R E++G+NCRFL G +TD +
Sbjct: 404 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYNREEILGRNCRFLQGPETDRATV 463
Query: 303 YQVSIAI 309
++ AI
Sbjct: 464 RKIRDAI 470
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 38/60 (63%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L +Q+FV+ D P+ P++YAS F +TGY EVVG+NCRFL G TD
Sbjct: 123 VSEELRAALSVFQQTFVVSDATHPNHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTD 182
>gi|448584371|ref|ZP_21647245.1| HTR-like protein [Haloferax gibbonsii ATCC 33959]
gi|445728269|gb|ELZ79875.1| HTR-like protein [Haloferax gibbonsii ATCC 33959]
Length = 716
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 66/115 (57%), Gaps = 2/115 (1%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P +TDP + +PIV+ + F ++G+S E +GRN R QG T+ + E+
Sbjct: 270 AIDEAPIGVVLTDPDQADNPIVYVNDEFTDITGYSHDEALGRNCRFLQGEETDEAAVAEL 329
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
R A+ E P+ LLNY+KDGT FW +++ +F +DG FV Q I RK
Sbjct: 330 RAAVDEREPVTTELLNYRKDGTEFWNRVRIAPIF--DDGSVDLFVGFQDDITPRK 382
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 35/55 (63%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
VL DP D P+VY +D F +TGY +E +G+NCRFL G +TD + ++ A+
Sbjct: 279 VLTDPDQADNPIVYVNDEFTDITGYSHDEALGRNCRFLQGEETDEAAVAELRAAV 333
>gi|6006312|dbj|BAA84780.1| nonphototrophic hypocotyl 1a [Oryza sativa Japonica Group]
Length = 921
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 70/108 (64%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ ++R EI+GRN R QGP T+R T+ +IR
Sbjct: 408 LERIEKNFVITDPRLPDNPIIFASDSFLQLTEYNREEILGRNCRFLQGPETDRATVRKIR 467
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AI + + V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 468 DAIDNQAEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGVQL 514
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL +F ++D + HPI++AS GF M+G++ E++GRN R QG T+ I +I
Sbjct: 130 ALSVFQQTFVVSDATHPNHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDPHEIDKI 189
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
R+++ +LNYKKDGTPFW L ++ + EDGR F+ +QV +
Sbjct: 190 RQSLANGSNYCGRILNYKKDGTPFWNLLTIAPI-KDEDGRLLKFIGMQVEV 239
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 51/67 (76%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y+R E++G+NCRFL G +TD +
Sbjct: 404 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYNREEILGRNCRFLQGPETDRATV 463
Query: 303 YQVSIAI 309
++ AI
Sbjct: 464 RKIRDAI 470
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 38/60 (63%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L +Q+FV+ D P+ P++YAS F +TGY EVVG+NCRFL G TD
Sbjct: 123 VSEELRAALSVFQQTFVVSDATHPNHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTD 182
>gi|115486852|ref|NP_001065232.1| Os12g0101800 [Oryza sativa Japonica Group]
gi|122248708|sp|Q2QYY8.2|PHT1A_ORYSJ RecName: Full=Phototropin-1A; AltName: Full=Non-phototropic
hypocotyl protein 1A; Short=OsNPH1a
gi|108862060|gb|ABA95572.2| Nonphototropic hypocotyl protein 1, putative, expressed [Oryza
sativa Japonica Group]
gi|113648420|dbj|BAF28932.1| Os12g0101800 [Oryza sativa Japonica Group]
Length = 921
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 70/108 (64%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ ++R EI+GRN R QGP T+R T+ +IR
Sbjct: 408 LERIEKNFVITDPRLPDNPIIFASDSFLQLTEYNREEILGRNCRFLQGPETDRATVRKIR 467
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AI + + V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 468 DAIDNQAEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGVQL 514
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL +F ++D + HPI++AS GF M+G++ E++GRN R QG T+ I +I
Sbjct: 130 ALSAFQQTFVVSDATHPNHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDPHEIDKI 189
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
R+++ +LNYKKDGTPFW L ++ + EDGR F+ +QV +
Sbjct: 190 RQSLANGSNYCGRILNYKKDGTPFWNLLTIAPI-KDEDGRLLKFIGMQVEV 239
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 51/67 (76%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y+R E++G+NCRFL G +TD +
Sbjct: 404 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYNREEILGRNCRFLQGPETDRATV 463
Query: 303 YQVSIAI 309
++ AI
Sbjct: 464 RKIRDAI 470
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 38/60 (63%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L +Q+FV+ D P+ P++YAS F +TGY EVVG+NCRFL G TD
Sbjct: 123 VSEELRAALSAFQQTFVVSDATHPNHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTD 182
>gi|448320158|ref|ZP_21509646.1| HTR-like protein [Natronococcus amylolyticus DSM 10524]
gi|445606564|gb|ELY60468.1| HTR-like protein [Natronococcus amylolyticus DSM 10524]
Length = 634
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 70/111 (63%), Gaps = 4/111 (3%)
Query: 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
+A+DE P ITDPS + +PI +A+ GF++++G++R+EI+GRN R QG RT+ +
Sbjct: 27 EQAIDEAPVGIVITDPSRADNPITYANEGFVRVTGYARSEILGRNCRFLQGERTDPEPVE 86
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDG-RATHFVAVQ 130
+R AI + V LLNY++DG PFW ++ +F DG +FV +Q
Sbjct: 87 RMRAAIDAGESVTVELLNYRRDGDPFWNRVTIAPLF---DGNEVANFVGIQ 134
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 38/56 (67%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
V+ DP D P+ YA++ F+++TGY R+E++G+NCRFL G TD + ++ AI
Sbjct: 37 IVITDPSRADNPITYANEGFVRVTGYARSEILGRNCRFLQGERTDPEPVERMRAAI 92
>gi|255582071|ref|XP_002531832.1| serine/threonine protein kinase, putative [Ricinus communis]
gi|223528528|gb|EEF30552.1| serine/threonine protein kinase, putative [Ricinus communis]
Length = 1006
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 69/109 (63%), Gaps = 1/109 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+ T+ +I
Sbjct: 487 TLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVRKI 546
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
REAI + + V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 547 REAIDNQTDVTVQLINYTKSGKKFWNLFHLQPMRDQK-GEVQYFIGVQL 594
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 69/114 (60%), Gaps = 1/114 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ AL +F ++D + +PI++AS GF KM+G++ E+IGRN R QG T+ +
Sbjct: 198 IKNALSTFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPEDV 257
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+IREA++ E LLNYKKDGTPFW L +S + E G+ ++ +QV +
Sbjct: 258 AKIREALQSENSYCGRLLNYKKDGTPFWNLLTISPI-KDESGKVLKYIGMQVEV 310
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 50/67 (74%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 484 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATV 543
Query: 303 YQVSIAI 309
++ AI
Sbjct: 544 RKIREAI 550
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 47/75 (62%)
Query: 235 GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG 294
G+ +S + +L +Q+FV+ D PD P++YAS F K+TGY EV+G+NCRFL G
Sbjct: 190 GIPRVSEDIKNALSTFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFLQG 249
Query: 295 VDTDTTVLYQVSIAI 309
DTD + ++ A+
Sbjct: 250 ADTDPEDVAKIREAL 264
>gi|94499808|ref|ZP_01306344.1| putative sensor protein [Bermanella marisrubri]
gi|94428009|gb|EAT12983.1| putative sensor protein [Oceanobacter sp. RED65]
Length = 938
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 78/132 (59%), Gaps = 5/132 (3%)
Query: 2 DSQLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEI 61
+SQ L++Q N + + EA+D P TI D + P+++A+R F K++G+S +E+
Sbjct: 277 NSQEQLLKQQDLN---VLLSEAIDASPVGVTIADINKPDEPLIYANRFFYKLTGYSESEV 333
Query: 62 IGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDG 121
IG+N R QG TNR + IR+AI R I + LLNYKKDGT FW +S +F +DG
Sbjct: 334 IGKNCRFLQGRNTNREARLIIRDAINTRRKIVLELLNYKKDGTEFWEKLFLSPIF--KDG 391
Query: 122 RATHFVAVQVPI 133
+V +Q I
Sbjct: 392 ECRAYVGIQQDI 403
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 256 LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+ D + PD P++YA+ F KLTGY +EV+G+NCRFL G +T+
Sbjct: 305 IADINKPDEPLIYANRFFYKLTGYSESEVIGKNCRFLQGRNTN 347
>gi|297746173|emb|CBI16229.3| unnamed protein product [Vitis vinifera]
Length = 958
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+ T+ +IR
Sbjct: 433 LERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVRKIR 492
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
EAI + + V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 493 EAIDNQTDVTVQLINYTKSGKKFWNLFHLQPMRDQK-GEVQYFIGVQL 539
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 73/132 (55%), Gaps = 3/132 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL +F ++D + +PI++AS GF KM+G++ E+IGRN R QG T+ +
Sbjct: 153 LKDALSTFQQTFVVSDATKPDYPILYASAGFFKMTGYTSKEVIGRNCRFLQGSGTDPEDV 212
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
+IREA+ LLNYKKDGTPFW L +S + E+G F+ +QV + KH
Sbjct: 213 AKIREALHAGNSYCGRLLNYKKDGTPFWNLLTISPI-KDENGNVLKFIGMQVEVS--KHT 269
Query: 140 RNSGMSYSEDGG 151
S + G
Sbjct: 270 EGSKEKMTRPNG 281
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 50/67 (74%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 429 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATV 488
Query: 303 YQVSIAI 309
++ AI
Sbjct: 489 RKIREAI 495
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L +Q+FV+ D PD P++YAS F K+TGY EV+G+NCRFL G TD
Sbjct: 149 VSEDLKDALSTFQQTFVVSDATKPDYPILYASAGFFKMTGYTSKEVIGRNCRFLQGSGTD 208
Query: 299 TTVLYQVSIAI 309
+ ++ A+
Sbjct: 209 PEDVAKIREAL 219
>gi|289626532|ref|ZP_06459486.1| histidine kinase, partial [Pseudomonas syringae pv. aesculi str.
NCPPB 3681]
gi|289649213|ref|ZP_06480556.1| histidine kinase [Pseudomonas syringae pv. aesculi str. 2250]
Length = 452
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 69/110 (62%), Gaps = 1/110 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ + +PI+F++R FL+M+G+S EIIG N R QGP T+R + IREAI E I
Sbjct: 37 VTDPNRADNPIIFSNRAFLEMTGYSSEEIIGTNCRFLQGPETDRAVVQSIREAIDERVDI 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S V+ + G +F A Q+ I R+ ++
Sbjct: 97 STEILNYRKDGSTFWNALFISPVY-NDAGDLIYFFASQLDISRRRDAEDA 145
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 42/67 (62%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP+ D P+++++ AFL++TGY E++G NCRFL G +TD V+
Sbjct: 24 FFAAVETTRMPMIVTDPNRADNPIIFSNRAFLEMTGYSSEEIIGTNCRFLQGPETDRAVV 83
Query: 303 YQVSIAI 309
+ AI
Sbjct: 84 QSIREAI 90
>gi|448508777|ref|ZP_21615595.1| HTR-like protein [Halorubrum distributum JCM 9100]
gi|448517673|ref|ZP_21617247.1| HTR-like protein [Halorubrum distributum JCM 10118]
gi|445697088|gb|ELZ49162.1| HTR-like protein [Halorubrum distributum JCM 9100]
gi|445705888|gb|ELZ57776.1| HTR-like protein [Halorubrum distributum JCM 10118]
Length = 596
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 71/127 (55%), Gaps = 2/127 (1%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
ALDE P TITDP+ +P+V+ + F++M+G+ R E IG N R QGP T ++ +
Sbjct: 263 ALDEAPVGITITDPAREDNPMVYVNDRFVEMTGYDREESIGVNCRFLQGPDTEEESVQAL 322
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R+AI E V LLNY+KDGT FW ++ + DG TH+V Q I + K R +
Sbjct: 323 RDAIDAEESTSVELLNYRKDGTEFWNRVSIAPIC-DADGAVTHWVGFQEDITAFKE-RET 380
Query: 143 GMSYSED 149
+ D
Sbjct: 381 ALERQND 387
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 37/64 (57%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
+L + DP D PMVY +D F+++TGYDR E +G NCRFL G DT+ + +
Sbjct: 263 ALDEAPVGITITDPAREDNPMVYVNDRFVEMTGYDREESIGVNCRFLQGPDTEEESVQAL 322
Query: 306 SIAI 309
AI
Sbjct: 323 RDAI 326
>gi|225435157|ref|XP_002281752.1| PREDICTED: phototropin-1-like [Vitis vinifera]
Length = 1004
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+ T+ +IR
Sbjct: 479 LERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVRKIR 538
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
EAI + + V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 539 EAIDNQTDVTVQLINYTKSGKKFWNLFHLQPMRDQK-GEVQYFIGVQL 585
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 73/132 (55%), Gaps = 3/132 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL +F ++D + +PI++AS GF KM+G++ E+IGRN R QG T+ +
Sbjct: 199 LKDALSTFQQTFVVSDATKPDYPILYASAGFFKMTGYTSKEVIGRNCRFLQGSGTDPEDV 258
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
+IREA+ LLNYKKDGTPFW L +S + E+G F+ +QV + KH
Sbjct: 259 AKIREALHAGNSYCGRLLNYKKDGTPFWNLLTISPI-KDENGNVLKFIGMQVEVS--KHT 315
Query: 140 RNSGMSYSEDGG 151
S + G
Sbjct: 316 EGSKEKMTRPNG 327
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 50/67 (74%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 475 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATV 534
Query: 303 YQVSIAI 309
++ AI
Sbjct: 535 RKIREAI 541
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L +Q+FV+ D PD P++YAS F K+TGY EV+G+NCRFL G TD
Sbjct: 195 VSEDLKDALSTFQQTFVVSDATKPDYPILYASAGFFKMTGYTSKEVIGRNCRFLQGSGTD 254
Query: 299 TTVLYQVSIAI 309
+ ++ A+
Sbjct: 255 PEDVAKIREAL 265
>gi|108862061|gb|ABG21841.1| Nonphototropic hypocotyl protein 1, putative, expressed [Oryza
sativa Japonica Group]
gi|215694946|dbj|BAG90137.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 616
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 70/109 (64%), Gaps = 1/109 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
L+ + +F ITDP + +PI+FAS FL+++ ++R EI+GRN R QGP T+R T+ +I
Sbjct: 102 TLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYNREEILGRNCRFLQGPETDRATVRKI 161
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
R+AI + + V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 162 RDAIDNQAEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGVQL 209
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 51/67 (76%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y+R E++G+NCRFL G +TD +
Sbjct: 99 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYNREEILGRNCRFLQGPETDRATV 158
Query: 303 YQVSIAI 309
++ AI
Sbjct: 159 RKIRDAI 165
>gi|422580175|ref|ZP_16655643.1| histidine kinase, partial [Pseudomonas syringae pv. aesculi str.
0893_23]
gi|330870611|gb|EGH05320.1| histidine kinase [Pseudomonas syringae pv. aesculi str. 0893_23]
Length = 446
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 69/110 (62%), Gaps = 1/110 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ + +PI+F++R FL+M+G+S EIIG N R QGP T+R + IREAI E I
Sbjct: 37 VTDPNRADNPIIFSNRAFLEMTGYSSEEIIGTNCRFLQGPETDRAVVQSIREAIDERVDI 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S V+ + G +F A Q+ I R+ ++
Sbjct: 97 STEILNYRKDGSTFWNALFISPVY-NDAGDLIYFFASQLDISRRRDAEDA 145
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 42/67 (62%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP+ D P+++++ AFL++TGY E++G NCRFL G +TD V+
Sbjct: 24 FFAAVETTRMPMIVTDPNRADNPIIFSNRAFLEMTGYSSEEIIGTNCRFLQGPETDRAVV 83
Query: 303 YQVSIAI 309
+ AI
Sbjct: 84 QSIREAI 90
>gi|224055599|ref|XP_002298559.1| predicted protein [Populus trichocarpa]
gi|222845817|gb|EEE83364.1| predicted protein [Populus trichocarpa]
Length = 977
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+ T+ +IR
Sbjct: 452 LERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVRKIR 511
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
EAI + + V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 512 EAIDNQTDVTVQLINYTKSGKKFWNLFHLQPMRDQK-GEVQYFIGVQL 558
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 89/159 (55%), Gaps = 10/159 (6%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ AL +F ++D + +PI++AS GF KM+G++ E+IGRN R QG T+ +
Sbjct: 167 IRNALSTFQQTFVVSDATKPDYPILYASAGFFKMTGYTSKEVIGRNCRFLQGAGTDPEDV 226
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPIVSRKH 138
+IREA+R E LLNYKKDG+PFW L ++ + K+D G+ F+ + V + KH
Sbjct: 227 AKIREALRGEGTYCGRLLNYKKDGSPFWNLLTIAPI--KDDSGKVLKFIGMLVEV--SKH 282
Query: 139 MRNSGMSYSEDGG--GSRLREIVFGSCRREVCSDSLLDL 175
S G GS +R + + ++E+ + S+ +L
Sbjct: 283 TEGSKDKTLRPNGLPGSLIR---YDARQKEMATSSVTEL 318
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 50/67 (74%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 448 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATV 507
Query: 303 YQVSIAI 309
++ AI
Sbjct: 508 RKIREAI 514
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 44/71 (61%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S + +L +Q+FV+ D PD P++YAS F K+TGY EV+G+NCRFL G TD
Sbjct: 163 VSEDIRNALSTFQQTFVVSDATKPDYPILYASAGFFKMTGYTSKEVIGRNCRFLQGAGTD 222
Query: 299 TTVLYQVSIAI 309
+ ++ A+
Sbjct: 223 PEDVAKIREAL 233
>gi|242082458|ref|XP_002441654.1| hypothetical protein SORBIDRAFT_08g000260 [Sorghum bicolor]
gi|241942347|gb|EES15492.1| hypothetical protein SORBIDRAFT_08g000260 [Sorghum bicolor]
Length = 913
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ + R EI+GRN R QGP T+R T+ +IR
Sbjct: 398 LERIEKNFVITDPRLPDNPIIFASDSFLRLTEYCREEILGRNCRFLQGPETDRGTVKKIR 457
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AI + + V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 458 DAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GEVQYFIGVQL 504
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 69/119 (57%), Gaps = 1/119 (0%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + AL +F ++D + +PI++AS GF M+G+S E++GRN R QG T
Sbjct: 113 RVSEELRAALSAFQQTFVVSDATRPDYPILYASAGFFNMTGYSSNEVVGRNCRFLQGSGT 172
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+ I +IR+A+ +LNYKKDGTPFW L ++ + EDGR F+ +QV +
Sbjct: 173 DPVEISKIRQALAAGSNYCGRILNYKKDGTPFWNLLTVAPI-KDEDGRVLKFIGMQVEV 230
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 50/67 (74%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 394 LATTLERIEKNFVITDPRLPDNPIIFASDSFLRLTEYCREEILGRNCRFLQGPETDRGTV 453
Query: 303 YQVSIAI 309
++ AI
Sbjct: 454 KKIRDAI 460
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 45/72 (62%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L +Q+FV+ D PD P++YAS F +TGY NEVVG+NCRFL G TD
Sbjct: 114 VSEELRAALSAFQQTFVVSDATRPDYPILYASAGFFNMTGYSSNEVVGRNCRFLQGSGTD 173
Query: 299 TTVLYQVSIAIS 310
+ ++ A++
Sbjct: 174 PVEISKIRQALA 185
>gi|448566261|ref|ZP_21636806.1| HTR-like protein [Haloferax prahovense DSM 18310]
gi|445714206|gb|ELZ65972.1| HTR-like protein [Haloferax prahovense DSM 18310]
Length = 712
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 66/115 (57%), Gaps = 2/115 (1%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P +TDP + +PIV+ + F ++G+SR E +GRN R QG T+ + E+
Sbjct: 270 AIDEAPIGVVLTDPDQADNPIVYVNDEFTDITGYSRDEAVGRNCRFLQGEETDEAAVAEL 329
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
R A+ E P+ LLNY+KDGT FW +++ +F + G FV Q I RK
Sbjct: 330 RAAVDEREPVTTELLNYRKDGTEFWNRVRIAPIF--DGGSVDLFVGFQDDITPRK 382
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 36/55 (65%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
VL DP D P+VY +D F +TGY R+E VG+NCRFL G +TD + ++ A+
Sbjct: 279 VLTDPDQADNPIVYVNDEFTDITGYSRDEAVGRNCRFLQGEETDEAAVAELRAAV 333
>gi|393766027|ref|ZP_10354584.1| signal transduction histidine kinase [Methylobacterium sp. GXF4]
gi|392728400|gb|EIZ85708.1| signal transduction histidine kinase [Methylobacterium sp. GXF4]
Length = 373
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 70/113 (61%), Gaps = 3/113 (2%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+ +T+P + +PIVFA+ FL+M+G+ R +++GRN R+ QG T+R + IREA+ +
Sbjct: 33 AMIVTNPRLPDNPIVFANDAFLRMTGYEREDVLGRNCRLLQGENTDRGAVALIREAVTAQ 92
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR--KHMR 140
R I ++LLNY+KDG+ FW +S V E G F A Q+ + R H+R
Sbjct: 93 RDIAIDLLNYRKDGSSFWNALYLSPV-ANEAGEVLFFFASQLDVTDRVDAHLR 144
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 44/60 (73%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
+ + ++ +P LPD P+V+A+DAFL++TGY+R +V+G+NCR L G +TD + + A++
Sbjct: 31 RMAMIVTNPRLPDNPIVFANDAFLRMTGYEREDVLGRNCRLLQGENTDRGAVALIREAVT 90
>gi|240138254|ref|YP_002962726.1| sensory transduction histidine kinase [Methylobacterium extorquens
AM1]
gi|240008223|gb|ACS39449.1| sensory transduction histidine kinase [Methylobacterium extorquens
AM1]
Length = 492
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 89/168 (52%), Gaps = 10/168 (5%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PIVFA+ F K++G++R EI+GRN R QGP T+ + IR+AI PI
Sbjct: 37 VTDPNRPDNPIVFANAAFTKLTGYTRDEILGRNCRFLQGPETDPYDVARIRDAIERRVPI 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ--VPIVSRKHMRNSG-MSYSED 149
E+ LLN+KKDG FW +S VF + DG T+F A Q V + K +R G ++ ED
Sbjct: 97 EIELLNHKKDGEVFWNRLLVSPVFDR-DGALTYFFASQFDVTLERNKLVRLQGELAALED 155
Query: 150 GGGSRLREIVFGSCRREVCSDSLLDLDRV--LALDSDDTGLEIEDSCE 195
R E+ R L R+ LD D LE D C+
Sbjct: 156 EVARRKAELARTDDRMRFA----LKAGRIGSWTLDLADRRLEASDICK 199
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 42/59 (71%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ ++ DP+ PD P+V+A+ AF KLTGY R+E++G+NCRFL G +TD + ++ AI
Sbjct: 32 RMPMLVTDPNRPDNPIVFANAAFTKLTGYTRDEILGRNCRFLQGPETDPYDVARIRDAI 90
>gi|428316459|ref|YP_007114341.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Oscillatoria nigro-viridis PCC 7112]
gi|428240139|gb|AFZ05925.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Oscillatoria nigro-viridis PCC 7112]
Length = 1003
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 71/116 (61%), Gaps = 4/116 (3%)
Query: 17 TLWVHE-ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTN 75
LW+ + AL I D + PI++ + F +M+G+ +EI+GRN R QGP T+
Sbjct: 27 ALWLRDRALAATSCGIVIADANAPDCPIIYCNPAFERMTGYCASEILGRNCRFLQGPDTD 86
Query: 76 RRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQ 130
R T+ +IREA+R+ R I+ + NY+KDGTPFW K+SL ++D THFV VQ
Sbjct: 87 RTTVAKIREALRQGRAIQTPIKNYRKDGTPFWT--KLSLSPVRDDKANLTHFVGVQ 140
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 240 SSSLYI---SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296
S +L++ +L V+ D + PD P++Y + AF ++TGY +E++G+NCRFL G D
Sbjct: 25 SEALWLRDRALAATSCGIVIADANAPDCPIIYCNPAFERMTGYCASEILGRNCRFLQGPD 84
Query: 297 TDTTVLYQVSIAI 309
TD T + ++ A+
Sbjct: 85 TDRTTVAKIREAL 97
>gi|422607389|ref|ZP_16679389.1| histidine kinase, partial [Pseudomonas syringae pv. mori str.
301020]
gi|330891031|gb|EGH23692.1| histidine kinase [Pseudomonas syringae pv. mori str. 301020]
Length = 254
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 69/110 (62%), Gaps = 1/110 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ + +PI+F++R FL+M+G+S EIIG N R QGP T+R + IREAI E I
Sbjct: 37 VTDPNRADNPIIFSNRAFLEMTGYSSEEIIGTNCRFLQGPETDRAVVQSIREAIDERVDI 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S V+ + G +F A Q+ I R+ ++
Sbjct: 97 STEILNYRKDGSTFWNALFISPVY-NDAGDLIYFFASQLDISRRRDAEDA 145
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 42/67 (62%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP+ D P+++++ AFL++TGY E++G NCRFL G +TD V+
Sbjct: 24 FFAAVETTRMPMIVTDPNRADNPIIFSNRAFLEMTGYSSEEIIGTNCRFLQGPETDRAVV 83
Query: 303 YQVSIAI 309
+ AI
Sbjct: 84 QSIREAI 90
>gi|332140272|ref|YP_004426010.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii str.
'Deep ecotype']
gi|327550294|gb|AEA97012.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii str.
'Deep ecotype']
Length = 959
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 82/160 (51%), Gaps = 4/160 (2%)
Query: 9 EQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM 68
++S + + H A+DE S I+D G PI++A+ F +++G++R EIIG N R
Sbjct: 432 QRSLESHVKVLTH-AMDEATVSIIISDIKRVGQPIIYANSAFEELTGYTREEIIGHNCRS 490
Query: 69 FQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVA 128
QG T +TI IR+AI PIE LLNYKKDGT F+ ++ V K +G TH++
Sbjct: 491 MQGEETKEKTIDCIRKAIATREPIETTLLNYKKDGTKFFNRLNLTPV--KTNGEITHYIG 548
Query: 129 VQVPIVSRKHMRNSGMSYSEDGGGS-RLREIVFGSCRREV 167
Q + ++ E S RL+ S E+
Sbjct: 549 FQQDVTQQRQTEQYLQEAREKAEESARLKSSFLASMSHEI 588
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPY 312
S ++ D P++YA+ AF +LTGY R E++G NCR + G +T + + AI+
Sbjct: 452 SIIISDIKRVGQPIIYANSAFEELTGYTREEIIGHNCRSMQGEETKEKTIDCIRKAIATR 511
Query: 313 PKKKSIYMEYVR 324
++ + Y +
Sbjct: 512 EPIETTLLNYKK 523
>gi|406595687|ref|YP_006746817.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii ATCC
27126]
gi|406373008|gb|AFS36263.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii ATCC
27126]
Length = 958
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 84/160 (52%), Gaps = 4/160 (2%)
Query: 9 EQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM 68
++S + + H A+DE S I+D G PI++ + F +++G+SR EIIG N R
Sbjct: 431 QRSLESHVKVLTH-AMDEATVSIIISDIKRVGQPIIYVNSAFEELTGYSREEIIGHNCRS 489
Query: 69 FQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVA 128
QG T+++T+ +IR+AI PIE LLNYKKDG+ F+ ++ V K +G TH++
Sbjct: 490 MQGDETSKQTVDQIRKAIAVREPIETTLLNYKKDGSAFYNRLNLTPV--KINGEVTHYIG 547
Query: 129 VQVPIVSRKHMRNSGMSYSEDGGGS-RLREIVFGSCRREV 167
Q + ++ E S RL+ S E+
Sbjct: 548 FQQDVTQQRQTEQYLQDAREKAEESARLKSSFLASMSHEI 587
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 59/132 (44%), Gaps = 22/132 (16%)
Query: 215 LTHYSQLTG--RLVCGKRCSLP-GMGFISSSLYISLGRIKQ----SFVLIDPHLPD---- 263
LTH+S TG R V + SL G I +Y+ +Q S V + H D
Sbjct: 391 LTHFSVSTGQERFVHWTKTSLADANGNIRGDIYVGSDETEQRSLESHVKVLTHAMDEATV 450
Query: 264 -----------MPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPY 312
P++Y + AF +LTGY R E++G NCR + G +T + Q+ AI+
Sbjct: 451 SIIISDIKRVGQPIIYVNSAFEELTGYSREEIIGHNCRSMQGDETSKQTVDQIRKAIAVR 510
Query: 313 PKKKSIYMEYVR 324
++ + Y +
Sbjct: 511 EPIETTLLNYKK 522
>gi|60099454|dbj|BAD89966.1| phototropin [Phaseolus vulgaris]
Length = 976
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
Query: 10 QSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMF 69
Q R L + L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R
Sbjct: 439 QRKEKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFL 498
Query: 70 QGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAV 129
QGP T+ T+ +IREAI + + V L+NY K G FW LF + + ++ G +F+ V
Sbjct: 499 QGPETDPATVRKIREAIDTQTDVTVQLINYTKTGKKFWNLFHLQPMRDQK-GEVQYFIGV 557
Query: 130 QV 131
Q+
Sbjct: 558 QL 559
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 70/114 (61%), Gaps = 1/114 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL +F ++D + +PI++AS GF KM+G++ E+IGRN R QG T+ +
Sbjct: 169 LRDALSAFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFMQGADTDPDDV 228
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+IREA++ + LLNYKKDGTPFW L ++ + DGR F+ +QV +
Sbjct: 229 AKIREALQTGQTYCGRLLNYKKDGTPFWNLLTIAPI-KDHDGRVLKFIGMQVEV 281
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 50/67 (74%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 449 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATV 508
Query: 303 YQVSIAI 309
++ AI
Sbjct: 509 RKIREAI 515
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 47/75 (62%)
Query: 235 GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG 294
G+ +S L +L +Q+FV+ D PD P++YAS F K+TGY EV+G+NCRF+ G
Sbjct: 161 GIPRVSEDLRDALSAFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFMQG 220
Query: 295 VDTDTTVLYQVSIAI 309
DTD + ++ A+
Sbjct: 221 ADTDPDDVAKIREAL 235
>gi|407682658|ref|YP_006797832.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii str.
'English Channel 673']
gi|407244269|gb|AFT73455.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii str.
'English Channel 673']
Length = 958
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 84/160 (52%), Gaps = 4/160 (2%)
Query: 9 EQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM 68
++S + + H A+DE S I+D G PI++ + F +++G+SR EIIG N R
Sbjct: 431 QRSLESHVKVLTH-AMDEATVSIIISDIKRVGQPIIYVNSAFEELTGYSREEIIGHNCRS 489
Query: 69 FQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVA 128
QG T+++T+ +IR+AI PIE LLNYKKDG+ F+ ++ V K +G TH++
Sbjct: 490 MQGDETSKQTVDQIRKAIAVREPIETTLLNYKKDGSAFYNRLNLTPV--KINGEVTHYIG 547
Query: 129 VQVPIVSRKHMRNSGMSYSEDGGGS-RLREIVFGSCRREV 167
Q + ++ E S RL+ S E+
Sbjct: 548 FQQDVTQQRQTEQYLQDAREKAEESARLKSSFLASMSHEI 587
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 59/132 (44%), Gaps = 22/132 (16%)
Query: 215 LTHYSQLTG--RLVCGKRCSLP-GMGFISSSLYISLGRIKQ----SFVLIDPHLPD---- 263
LTH+S TG R V + SL G I +Y+ +Q S V + H D
Sbjct: 391 LTHFSVSTGQERFVHWTKTSLADANGNIRGDIYVGSDETEQRSLESHVKVLTHAMDEATV 450
Query: 264 -----------MPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPY 312
P++Y + AF +LTGY R E++G NCR + G +T + Q+ AI+
Sbjct: 451 SIIISDIKRVGQPIIYVNSAFEELTGYSREEIIGHNCRSMQGDETSKQTVDQIRKAIAVR 510
Query: 313 PKKKSIYMEYVR 324
++ + Y +
Sbjct: 511 EPIETTLLNYKK 522
>gi|448456461|ref|ZP_21595230.1| bacterio-opsin activator [Halorubrum lipolyticum DSM 21995]
gi|445811937|gb|EMA61934.1| bacterio-opsin activator [Halorubrum lipolyticum DSM 21995]
Length = 667
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 70/119 (58%), Gaps = 1/119 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
V A+ E P +I+DP +S +P+V+A+ +++ +G+ E +GRN R QGP T+ T+
Sbjct: 142 VKRAVAEAPVGISISDPDLSDYPLVYANEAWIEHTGYPIEEALGRNPRFLQGPGTDPETV 201
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
I EA+ E I V + NY++DGTPFW ++ V+ DG H+V Q + RK+
Sbjct: 202 ERIAEAVAENEEITVEIRNYRRDGTPFWNELTVAPVYDG-DGDLAHYVGFQNDVTDRKN 259
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 78/147 (53%), Gaps = 5/147 (3%)
Query: 166 EVCSDSLLDLDRVLALDSDDTGLEIEDSCE--ASDLEKRKAATAIDNILSVLTHYSQLTG 223
E +D+ L++ VL +DD G + E A+++ +R +I+ ++S ++ ++ T
Sbjct: 66 EAVADADLEVPVVL-FTADDDGARAAGALERGAAEVRRRNGTGSIERLVSDVS--ARCTE 122
Query: 224 RLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNE 283
G R + G ++ + ++ + DP L D P+VYA++A+++ TGY E
Sbjct: 123 GPPPGARQDISGREPSATEVKRAVAEAPVGISISDPDLSDYPLVYANEAWIEHTGYPIEE 182
Query: 284 VVGQNCRFLNGVDTDTTVLYQVSIAIS 310
+G+N RFL G TD + +++ A++
Sbjct: 183 ALGRNPRFLQGPGTDPETVERIAEAVA 209
>gi|257484183|ref|ZP_05638224.1| histidine kinase [Pseudomonas syringae pv. tabaci str. ATCC 11528]
gi|422678915|ref|ZP_16737189.1| histidine kinase [Pseudomonas syringae pv. tabaci str. ATCC 11528]
gi|331008262|gb|EGH88319.1| histidine kinase [Pseudomonas syringae pv. tabaci str. ATCC 11528]
Length = 534
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 69/110 (62%), Gaps = 1/110 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ + +PI+F++R FL+M+G+S EIIG N R QGP T+R + IREAI E I
Sbjct: 37 VTDPNRADNPIIFSNRAFLEMTGYSSEEIIGTNCRFLQGPETDRAVVQSIREAIDERVDI 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S V+ + G +F A Q+ I R+ ++
Sbjct: 97 STEILNYRKDGSTFWNALFISPVY-NDAGDLIYFFASQLDISRRRDAEDA 145
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 42/67 (62%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP+ D P+++++ AFL++TGY E++G NCRFL G +TD V+
Sbjct: 24 FFAAVETTRMPMIVTDPNRADNPIIFSNRAFLEMTGYSSEEIIGTNCRFLQGPETDRAVV 83
Query: 303 YQVSIAI 309
+ AI
Sbjct: 84 QSIREAI 90
>gi|414881997|tpg|DAA59128.1| TPA: blue-light receptor phototropin 1 [Zea mays]
Length = 761
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ + R EI+GRN R QGP T+R T+ +IR
Sbjct: 246 LERIEKNFVITDPRLPDNPIIFASDSFLRLTEYCREEILGRNCRFLQGPETDRGTVKKIR 305
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AI + + V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 306 DAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGVQL 352
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 50/67 (74%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 242 LATTLERIEKNFVITDPRLPDNPIIFASDSFLRLTEYCREEILGRNCRFLQGPETDRGTV 301
Query: 303 YQVSIAI 309
++ AI
Sbjct: 302 KKIRDAI 308
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 53 MSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKM 112
M+G+S E++GRN R QG T+ I +IR+A+ +LNYKKDGTPFW L +
Sbjct: 1 MTGYSSNEVVGRNCRFLQGSGTDPVEISKIRQALAAGSNYCGRILNYKKDGTPFWNLLTV 60
Query: 113 SLVFGKEDGRATHFVAVQVPI 133
+ + EDGR F+ +QV +
Sbjct: 61 API-KDEDGRVLKFIGMQVEV 80
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 276 LTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
+TGY NEVVG+NCRFL G TD + ++ A++
Sbjct: 1 MTGYSSNEVVGRNCRFLQGSGTDPVEISKIRQALA 35
>gi|298158507|gb|EFH99574.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
Length = 534
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 69/110 (62%), Gaps = 1/110 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ + +PI+F++R FL+M+G+S EIIG N R QGP T+R + IREAI E I
Sbjct: 37 VTDPNRADNPIIFSNRAFLEMTGYSSEEIIGTNCRFLQGPETDRAVVQSIREAIDERVDI 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S V+ + G +F A Q+ I R+ ++
Sbjct: 97 STEILNYRKDGSTFWNALFISPVY-NDAGDLIYFFASQLDISRRRDAEDA 145
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 42/67 (62%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP+ D P+++++ AFL++TGY E++G NCRFL G +TD V+
Sbjct: 24 FFAAVETTRMPMIVTDPNRADNPIIFSNRAFLEMTGYSSEEIIGTNCRFLQGPETDRAVV 83
Query: 303 YQVSIAI 309
+ AI
Sbjct: 84 QSIREAI 90
>gi|416016882|ref|ZP_11564119.1| histidine kinase [Pseudomonas syringae pv. glycinea str. B076]
gi|416027004|ref|ZP_11570335.1| histidine kinase [Pseudomonas syringae pv. glycinea str. race 4]
gi|416028131|ref|ZP_11571231.1| histidine kinase [Pseudomonas syringae pv. glycinea str. race 4]
gi|422407611|ref|ZP_16484577.1| histidine kinase [Pseudomonas syringae pv. glycinea str. race 4]
gi|221272073|sp|Q48IV1.2|LOVHK_PSE14 RecName: Full=Blue-light-activated protein; Includes: RecName:
Full=Blue-light-activated histidine kinase; Includes:
RecName: Full=Response regulator
gi|320324090|gb|EFW80172.1| histidine kinase [Pseudomonas syringae pv. glycinea str. B076]
gi|320327829|gb|EFW83836.1| histidine kinase [Pseudomonas syringae pv. glycinea str. race 4]
gi|320328665|gb|EFW84665.1| histidine kinase [Pseudomonas syringae pv. glycinea str. race 4]
gi|330885482|gb|EGH19631.1| histidine kinase [Pseudomonas syringae pv. glycinea str. race 4]
Length = 534
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 69/110 (62%), Gaps = 1/110 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ + +PI+F++R FL+M+G+S EIIG N R QGP T+R + IREAI E I
Sbjct: 37 VTDPNRADNPIIFSNRAFLEMTGYSSEEIIGTNCRFLQGPETDRAVVQSIREAIDERVDI 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S V+ + G +F A Q+ I R+ ++
Sbjct: 97 STEILNYRKDGSTFWNALFISPVY-NDAGDLIYFFASQLDISRRRDAEDA 145
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 42/67 (62%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP+ D P+++++ AFL++TGY E++G NCRFL G +TD V+
Sbjct: 24 FFAAVETTRMPMIVTDPNRADNPIIFSNRAFLEMTGYSSEEIIGTNCRFLQGPETDRAVV 83
Query: 303 YQVSIAI 309
+ AI
Sbjct: 84 QSIREAI 90
>gi|448587044|ref|ZP_21648796.1| PAS sensor protein [Haloferax gibbonsii ATCC 33959]
gi|445724264|gb|ELZ75898.1| PAS sensor protein [Haloferax gibbonsii ATCC 33959]
Length = 732
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 66/115 (57%), Gaps = 1/115 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE TIT PS PIV+A+ F ++G+ E++G N R+ QGP T
Sbjct: 392 AIDEASVGITITGPSEDDCPIVYANGAFEDLTGYDAEEVLGENHRVLQGPDTAEEDCERF 451
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
REAI +E P V LLNY++DGTPFW +++ V G +DG T+++ Q + R
Sbjct: 452 REAIADEEPCSVELLNYRRDGTPFWNQSEITPVHG-DDGSVTNYIGFQREVTERN 505
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 26/39 (66%)
Query: 259 PHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDT 297
P D P+VYA+ AF LTGYD EV+G+N R L G DT
Sbjct: 405 PSEDDCPIVYANGAFEDLTGYDAEEVLGENHRVLQGPDT 443
>gi|71733399|ref|YP_274680.1| histidine kinase [Pseudomonas syringae pv. phaseolicola 1448A]
gi|71553952|gb|AAZ33163.1| sensory box histidine kinase/response regulator [Pseudomonas
syringae pv. phaseolicola 1448A]
Length = 507
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 69/110 (62%), Gaps = 1/110 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ + +PI+F++R FL+M+G+S EIIG N R QGP T+R + IREAI E I
Sbjct: 10 VTDPNRADNPIIFSNRAFLEMTGYSSEEIIGTNCRFLQGPETDRAVVQSIREAIDERVDI 69
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S V+ + G +F A Q+ I R+ ++
Sbjct: 70 STEILNYRKDGSTFWNALFISPVY-NDAGDLIYFFASQLDISRRRDAEDA 118
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 39/59 (66%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ ++ DP+ D P+++++ AFL++TGY E++G NCRFL G +TD V+ + AI
Sbjct: 5 RMPMIVTDPNRADNPIIFSNRAFLEMTGYSSEEIIGTNCRFLQGPETDRAVVQSIREAI 63
>gi|357161363|ref|XP_003579067.1| PREDICTED: phototropin-1A-like [Brachypodium distachyon]
Length = 921
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 71/119 (59%), Gaps = 1/119 (0%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + AL +F ++D + GHPI++AS GF M+G++ E++GRN R QG T
Sbjct: 119 RVSEELRAALSAFQQTFVVSDATKPGHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGT 178
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+ I +IR+A+ + +LNYKKDGTPFW L ++ + EDGR F+ +QV +
Sbjct: 179 DPAEIAKIRQALADGSNYCGRVLNYKKDGTPFWNLLTIAPI-KDEDGRVLKFIGMQVEV 236
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ + R EI+GRN R QGP T+R T+ +IR
Sbjct: 405 LERIEKNFVITDPRLPDNPIIFASDSFLQLTEYCREEILGRNCRFLQGPETDRATVRKIR 464
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AI + + V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 465 DAIDNQTDVTVQLINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGVQL 511
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 50/67 (74%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 401 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYCREEILGRNCRFLQGPETDRATV 460
Query: 303 YQVSIAI 309
++ AI
Sbjct: 461 RKIRDAI 467
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 234 PGMGFI---SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCR 290
PG G I S L +L +Q+FV+ D P P++YAS F +TGY EVVG+NCR
Sbjct: 112 PGGGAIPRVSEELRAALSAFQQTFVVSDATKPGHPIMYASAGFFNMTGYTSKEVVGRNCR 171
Query: 291 FLNGVDTDTTVLYQVSIAIS 310
FL G TD + ++ A++
Sbjct: 172 FLQGSGTDPAEIAKIRQALA 191
>gi|188580835|ref|YP_001924280.1| histidine kinase [Methylobacterium populi BJ001]
gi|179344333|gb|ACB79745.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi
BJ001]
Length = 541
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 68/110 (61%), Gaps = 1/110 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP +PI+FA+R F++M+G++ E+IG N R QGP T+R T+ ++R+AIRE R
Sbjct: 46 VTDPRQPDNPIIFANRAFIRMTGYTVDELIGNNCRFLQGPDTDRDTVSDVRDAIREHREF 105
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S VF + G +F Q+ + R+ S
Sbjct: 106 ATEILNYRKDGSSFWNALFVSPVFNRS-GDLVYFFGSQLDVSRRRDAEES 154
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 48/80 (60%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ R + ++ DP PD P+++A+ AF+++TGY +E++G NCRFL G DTD +
Sbjct: 33 FFAAVERTRMPMIVTDPRQPDNPIIFANRAFIRMTGYTVDELIGNNCRFLQGPDTDRDTV 92
Query: 303 YQVSIAISPYPKKKSIYMEY 322
V AI + + + + Y
Sbjct: 93 SDVRDAIREHREFATEILNY 112
>gi|401782496|dbj|BAM36551.1| phototropin 1 [Fragaria x ananassa]
Length = 1028
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+ T+ +IR
Sbjct: 503 LERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVKKIR 562
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
EAI + + V L+NY K G FW +F + + ++ G +F+ VQ+
Sbjct: 563 EAIDNQTEVTVQLINYTKSGKKFWNVFHLQPMRDQK-GEVQYFIGVQL 609
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 68/113 (60%), Gaps = 3/113 (2%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+F ++D + +PI++AS GF KM+G++ E+IGRN R QG T+ + ++REA+ +
Sbjct: 219 TFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPEDVAQLREALAKN 278
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
LLNYKKDGTPFW L ++ + E G+ F+ +QV + KH S
Sbjct: 279 TSYCGRLLNYKKDGTPFWNLLTIAPI-KDETGKVLKFIGMQVEV--SKHTEGS 328
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 50/67 (74%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 499 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATV 558
Query: 303 YQVSIAI 309
++ AI
Sbjct: 559 KKIREAI 565
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 45/72 (62%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L L +Q+FV+ D PD P++YAS F K+TGY EV+G+NCRFL G DTD
Sbjct: 205 VSEDLKNVLSTFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFLQGADTD 264
Query: 299 TTVLYQVSIAIS 310
+ Q+ A++
Sbjct: 265 PEDVAQLREALA 276
>gi|389867117|ref|YP_006369358.1| PAS/PAC light sensor protein [Modestobacter marinus]
gi|388489321|emb|CCH90899.1| putative PAS/PAC light sensor protein [Modestobacter marinus]
Length = 776
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 65/112 (58%), Gaps = 1/112 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+FTITDP P+V+ + F ++SG+S E +GRN R QGP T + ++R A+RE+
Sbjct: 217 AFTITDPRQEDDPLVWVNPSFTRISGYSYEESVGRNCRFLQGPATEDAAVDDLRRALREQ 276
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
+PI LLNY+KDGT FW ++ VF G FV VQ + R + +
Sbjct: 277 QPITTTLLNYRKDGTAFWNQLSITPVF-DGGGELVSFVGVQTDVTERVRVED 327
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+F + DP D P+V+ + +F +++GY E VG+NCRFL G T+
Sbjct: 217 AFTITDPRQEDDPLVWVNPSFTRISGYSYEESVGRNCRFLQGPATE 262
>gi|162457815|ref|NP_001104886.1| blue-light receptor phototropin 1 [Zea mays]
gi|2687358|gb|AAB88817.1| nonphototropic hypocotyl 1 [Zea mays]
Length = 911
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ + R EI+GRN R QGP T+R T+ +IR
Sbjct: 396 LERIEKNFVITDPRLPDNPIIFASDSFLRLTEYCREEILGRNCRFLQGPETDRGTVKKIR 455
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AI + + V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 456 DAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGVQL 502
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL +F ++D + HPI++AS GF M+G+S E++GRN R QG T+ I +I
Sbjct: 121 ALSAFQQTFVVSDATRPDHPILYASAGFFNMTGYSSNEVVGRNCRFLQGSGTDPVEISKI 180
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
R+A+ +LNYKKDGTPFW L ++ + EDGR F+ +QV +
Sbjct: 181 RQALAAGSNYCGRILNYKKDGTPFWNLLTVAPI-KDEDGRVLKFIGMQVEV 230
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 50/67 (74%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 392 LATTLERIEKNFVITDPRLPDNPIIFASDSFLRLTEYCREEILGRNCRFLQGPETDRGTV 451
Query: 303 YQVSIAI 309
++ AI
Sbjct: 452 KKIRDAI 458
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 45/72 (62%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L +Q+FV+ D PD P++YAS F +TGY NEVVG+NCRFL G TD
Sbjct: 114 VSEELRAALSAFQQTFVVSDATRPDHPILYASAGFFNMTGYSSNEVVGRNCRFLQGSGTD 173
Query: 299 TTVLYQVSIAIS 310
+ ++ A++
Sbjct: 174 PVEISKIRQALA 185
>gi|393723750|ref|ZP_10343677.1| PAS sensor protein [Sphingomonas sp. PAMC 26605]
Length = 368
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
ITDP+ +PIVF + F +++G++R EIIGRN R QGP T+ I EIRE I
Sbjct: 34 MVITDPAQPDNPIVFCNVAFQRLTGYAREEIIGRNCRFLQGPDTDPARIAEIREGIEAGH 93
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
++V+LLNY+KDGT FW +S V +E G F A Q+ + R +N
Sbjct: 94 AVDVDLLNYRKDGTTFWNALYLSPVRDRE-GVVRFFFASQLDVTDRIEAQN 143
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 37/55 (67%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
+ V+ DP PD P+V+ + AF +LTGY R E++G+NCRFL G DTD + ++
Sbjct: 31 RMPMVITDPAQPDNPIVFCNVAFQRLTGYAREEIIGRNCRFLQGPDTDPARIAEI 85
>gi|13786959|pdb|1G28|A Chain A, Structure Of A Flavin-Binding Domain, Lov2, From The
Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3
gi|13786960|pdb|1G28|B Chain B, Structure Of A Flavin-Binding Domain, Lov2, From The
Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3
gi|13786961|pdb|1G28|C Chain C, Structure Of A Flavin-Binding Domain, Lov2, From The
Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3
gi|13786962|pdb|1G28|D Chain D, Structure Of A Flavin-Binding Domain, Lov2, From The
Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3
gi|21730387|pdb|1JNU|A Chain A, Photoexcited Structure Of The Plant Photoreceptor Domain,
Phy3 Lov2
gi|21730388|pdb|1JNU|B Chain B, Photoexcited Structure Of The Plant Photoreceptor Domain,
Phy3 Lov2
gi|21730389|pdb|1JNU|C Chain C, Photoexcited Structure Of The Plant Photoreceptor Domain,
Phy3 Lov2
gi|21730390|pdb|1JNU|D Chain D, Photoexcited Structure Of The Plant Photoreceptor Domain,
Phy3 Lov2
Length = 104
Score = 95.1 bits (235), Expect = 4e-17, Method: Composition-based stats.
Identities = 43/101 (42%), Positives = 66/101 (65%), Gaps = 1/101 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
SF ITDP + +PI+FAS FL+++ ++R E++G N R QG T+R+ + IR+A++E+
Sbjct: 2 SFVITDPRLPDNPIIFASDRFLELTEYTREEVLGNNCRFLQGRGTDRKAVQLIRDAVKEQ 61
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
R + V +LNY K G FW LF + V E+G +F+ VQ
Sbjct: 62 RDVTVQVLNYTKGGRAFWNLFHLQ-VMRDENGDVQYFIGVQ 101
Score = 68.2 bits (165), Expect = 5e-09, Method: Composition-based stats.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 252 QSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+SFV+ DP LPD P+++ASD FL+LT Y R EV+G NCRFL G TD + + A+
Sbjct: 1 KSFVITDPRLPDNPIIFASDRFLELTEYTREEVLGNNCRFLQGRGTDRKAVQLIRDAV 58
>gi|359783901|ref|ZP_09287108.1| histidine kinase [Pseudomonas psychrotolerans L19]
gi|359368140|gb|EHK68724.1| histidine kinase [Pseudomonas psychrotolerans L19]
Length = 537
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 69/110 (62%), Gaps = 1/110 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP +PI+FA+ F M+G+ E++GRN R QGP T+R + +IREA+ +ER I
Sbjct: 41 VTDPKQPDNPIIFANNAFTDMTGYQVDELLGRNCRFLQGPETDRSVVGQIREAVEQEREI 100
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
V ++NY+KDG+ FW +S V+ + G T++ A Q+ + R+ ++
Sbjct: 101 SVEIINYRKDGSTFWNALFVSPVY-NDAGELTYYFASQLDVSRRRDAEDA 149
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 52/81 (64%), Gaps = 3/81 (3%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP PD P+++A++AF +TGY +E++G+NCRFL G +TD +V+
Sbjct: 28 FFAAVETTRMPMLVTDPKQPDNPIIFANNAFTDMTGYQVDELLGRNCRFLQGPETDRSVV 87
Query: 303 YQVSIAISPYPKKKSIYMEYV 323
Q+ A+ +++ I +E +
Sbjct: 88 GQIREAVE---QEREISVEII 105
>gi|228481103|gb|ACQ42250.1| blue light photoreceptor [Fragaria x ananassa]
Length = 642
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 68/109 (62%), Gaps = 1/109 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+ T+ +I
Sbjct: 116 TLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVKKI 175
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
REAI + + V L+NY K G FW +F + + + G +F+ VQ+
Sbjct: 176 REAIDNQTEVTVQLINYTKSGKKFWNVFHLQPMRDHK-GEVQYFIGVQL 223
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 50/67 (74%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 113 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATV 172
Query: 303 YQVSIAI 309
++ AI
Sbjct: 173 KKIREAI 179
>gi|448435239|ref|ZP_21586716.1| bacterio-opsin activator [Halorubrum tebenquichense DSM 14210]
gi|445684063|gb|ELZ36449.1| bacterio-opsin activator [Halorubrum tebenquichense DSM 14210]
Length = 667
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 71/118 (60%), Gaps = 1/118 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
V A+++ P +I+DP + +P+V+ + + + +G+S E++GRN R QGP T+ T+
Sbjct: 142 VTRAVEDAPIGISISDPDLPDYPLVYVNDAWREHTGYSVEEVLGRNPRFLQGPGTDPETV 201
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
EI EAI E + V + NY++DGTPFW ++ V+ E+G H+V Q + RK
Sbjct: 202 EEIAEAIGNEEEVTVEIRNYRRDGTPFWNELTVAPVY-DEEGELAHYVGFQNDVSERK 258
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 35/52 (67%)
Query: 258 DPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
DP LPD P+VY +DA+ + TGY EV+G+N RFL G TD + +++ AI
Sbjct: 157 DPDLPDYPLVYVNDAWREHTGYSVEEVLGRNPRFLQGPGTDPETVEEIAEAI 208
>gi|224008813|ref|XP_002293365.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220970765|gb|EED89101.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 113
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 69/111 (62%), Gaps = 1/111 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL +F I+DPS+ +PIV+ S+GFL ++G++ +++GRN R QGP T++ + I
Sbjct: 3 ALSGSQQNFAISDPSLPDNPIVYVSQGFLDLTGYTLDQVLGRNCRFLQGPGTDQAAVDVI 62
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
R+ +RE V LLNYK DGTPFW F ++ + E+ +FV VQ +
Sbjct: 63 RKGVREGVDTSVCLLNYKADGTPFWNQFFVAALRDAEN-NVVNFVGVQCEV 112
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 38/57 (66%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+L +Q+F + DP LPD P+VY S FL LTGY ++V+G+NCRFL G TD +
Sbjct: 3 ALSGSQQNFAISDPSLPDNPIVYVSQGFLDLTGYTLDQVLGRNCRFLQGPGTDQAAV 59
>gi|389643238|ref|XP_003719251.1| hypothetical protein MGG_08735 [Magnaporthe oryzae 70-15]
gi|351639020|gb|EHA46884.1| hypothetical protein MGG_08735 [Magnaporthe oryzae 70-15]
Length = 961
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 70/105 (66%), Gaps = 1/105 (0%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L DSFT+TDP ++ +PI+FAS GF ++G ++II +N R+ QG +T+++ + IR A+
Sbjct: 612 LGDSFTMTDPRLADNPIIFASDGFASLTGHPLSDIISKNCRVLQGKQTDKQAVARIRAAV 671
Query: 87 REERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
REE + +LNYKK+G PFW L ++ +F E G+ F+ QV
Sbjct: 672 REETEVVELVLNYKKNGDPFWNLLYIAPLF-DEQGQLAFFIGGQV 715
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLY 303
Y LG SF + DP L D P+++ASD F LTG+ ++++ +NCR L G TD +
Sbjct: 609 YQGLG---DSFTMTDPRLADNPIIFASDGFASLTGHPLSDIISKNCRVLQGKQTDKQAVA 665
Query: 304 QVSIAI 309
++ A+
Sbjct: 666 RIRAAV 671
>gi|253750646|gb|ACT35019.1| phytochrome 3 [Pronephrium lakhimpurense]
Length = 1438
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 69/107 (64%), Gaps = 1/107 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + SF ITDP + +PI+FAS FL+++G+SR E++G N R+ QG T+ + + IR
Sbjct: 934 LERIGHSFVITDPRLPDNPIIFASDQFLELTGYSREEVLGENCRLLQGQDTDPKAVQLIR 993
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
+A+ R + V+LLNY + G PFW LF + + K+ G +F+ VQ
Sbjct: 994 DAVEGGRDVTVHLLNYTRSGRPFWNLFHLQAMRDKK-GNLQYFIGVQ 1039
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 46/67 (68%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI SFV+ DP LPD P+++ASD FL+LTGY R EV+G+NCR L G DTD +
Sbjct: 930 LATTLERIGHSFVITDPRLPDNPIIFASDQFLELTGYSREEVLGENCRLLQGQDTDPKAV 989
Query: 303 YQVSIAI 309
+ A+
Sbjct: 990 QLIRDAV 996
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 66/130 (50%), Gaps = 15/130 (11%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
SF + D PI+FAS GF ++G++ E+IG N R QGP TN I IREA+ +
Sbjct: 672 SFVVVDALKPDLPIIFASTGFFNLTGYTSREVIGGNCRFLQGPETNPEDIASIREALVPQ 731
Query: 90 RPIEV--NLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPIVSRKHMRNSGMSY 146
LLNY+KDG+ FW L ++ + K+D G + VQ+ + Y
Sbjct: 732 GGGTFCGRLLNYRKDGSSFWNLLTIAPI--KDDSGTIVKLIGVQLEV----------SKY 779
Query: 147 SEDGGGSRLR 156
+E +RLR
Sbjct: 780 TEGSRANRLR 789
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 39/61 (63%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
+ SFV++D PD+P+++AS F LTGY EV+G NCRFL G +T+ + + A+
Sbjct: 670 QTSFVVVDALKPDLPIIFASTGFFNLTGYTSREVIGGNCRFLQGPETNPEDIASIREALV 729
Query: 311 P 311
P
Sbjct: 730 P 730
>gi|219850592|ref|YP_002465025.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM
9485]
gi|219544851|gb|ACL26589.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM
9485]
Length = 913
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 75/135 (55%), Gaps = 5/135 (3%)
Query: 2 DSQLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEI 61
D Q + NR+ L A++E+ +TD + PIVF +R F ++G++ E+
Sbjct: 25 DLQAEITRLRTQNRFLL---AAVNEMASGMIVTDAG-ADQPIVFVNRAFSTITGYAPNEV 80
Query: 62 IGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDG 121
+GRN R QGP+T+ T+ +REAI RPI+ +LNY+KDG PFW +S V E G
Sbjct: 81 LGRNCRFLQGPQTDAATVARLREAIAAARPIQERILNYRKDGQPFWNQLSISPV-RDETG 139
Query: 122 RATHFVAVQVPIVSR 136
FV VQ + ++
Sbjct: 140 NVVAFVGVQTDVTAQ 154
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 32/48 (66%)
Query: 263 DMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
D P+V+ + AF +TGY NEV+G+NCRFL G TD + ++ AI+
Sbjct: 59 DQPIVFVNRAFSTITGYAPNEVLGRNCRFLQGPQTDAATVARLREAIA 106
>gi|168702150|ref|ZP_02734427.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
2246]
Length = 997
Score = 95.1 bits (235), Expect = 4e-17, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 67/117 (57%), Gaps = 1/117 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+ + ITD GHPIVF S GF +++G+S AE +GRN R QG T+ + +
Sbjct: 503 AIHAVTQGIVITDARRPGHPIVFVSPGFERLTGYSAAEALGRNCRFLQGKDTDPAAVDRL 562
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
R+A+R+ER V LLNY+KDGT FW +S V D R T FV V + R+ +
Sbjct: 563 RDALRDERACTVELLNYRKDGTAFWNELSLSPVRDGGD-RVTQFVGVLTDVTQRRAL 618
Score = 53.5 bits (127), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 30/49 (61%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+ Q V+ D P P+V+ S F +LTGY E +G+NCRFL G DTD
Sbjct: 507 VTQGIVITDARRPGHPIVFVSPGFERLTGYSAAEALGRNCRFLQGKDTD 555
>gi|440462673|gb|ELQ32674.1| hypothetical protein OOU_Y34scaffold01075g30 [Magnaporthe oryzae
Y34]
gi|440489849|gb|ELQ69462.1| hypothetical protein OOW_P131scaffold00152g12 [Magnaporthe oryzae
P131]
Length = 961
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 70/105 (66%), Gaps = 1/105 (0%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L DSFT+TDP ++ +PI+FAS GF ++G ++II +N R+ QG +T+++ + IR A+
Sbjct: 612 LGDSFTMTDPRLADNPIIFASDGFASLTGHPLSDIISKNCRVLQGKQTDKQAVARIRAAV 671
Query: 87 REERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
REE + +LNYKK+G PFW L ++ +F E G+ F+ QV
Sbjct: 672 REETEVVELVLNYKKNGDPFWNLLYIAPLF-DEQGQLAFFIGGQV 715
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLY 303
Y LG SF + DP L D P+++ASD F LTG+ ++++ +NCR L G TD +
Sbjct: 609 YQGLG---DSFTMTDPRLADNPIIFASDGFASLTGHPLSDIISKNCRVLQGKQTDKQAVA 665
Query: 304 QVSIAI 309
++ A+
Sbjct: 666 RIRAAV 671
>gi|448469361|ref|ZP_21600143.1| HTR-like protein [Halorubrum kocurii JCM 14978]
gi|445809404|gb|EMA59447.1| HTR-like protein [Halorubrum kocurii JCM 14978]
Length = 720
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 66/115 (57%), Gaps = 1/115 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P T+ DP +PIV+A+ F ++G+ R E++GRN R QG T+ + +
Sbjct: 275 AMDEAPIGITLADPEQEDNPIVYANDEFTALTGYERPEVLGRNCRFLQGEGTDDEQVAAL 334
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
REAI + P+ V L NY+KDGT FW +++ +F DG FV Q + RK
Sbjct: 335 REAIDDREPVAVELRNYRKDGTEFWNRVRVAPMF-DADGDLDLFVGFQDDVTERK 388
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 16/111 (14%)
Query: 231 CSLPGMGFISSSLYISLGRIKQ------SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEV 284
C+L G + S + +++ L DP D P+VYA+D F LTGY+R EV
Sbjct: 254 CTLTASGATAPSGSTAAAKLRAMDEAPIGITLADPEQEDNPIVYANDEFTALTGYERPEV 313
Query: 285 VGQNCRFLNGVDTDTTVLYQ----------VSIAISPYPKKKSIYMEYVRV 325
+G+NCRFL G TD + V++ + Y K + + VRV
Sbjct: 314 LGRNCRFLQGEGTDDEQVAALREAIDDREPVAVELRNYRKDGTEFWNRVRV 364
>gi|323448448|gb|EGB04346.1| hypothetical protein AURANDRAFT_32655 [Aureococcus anophagefferens]
Length = 140
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 65/106 (61%), Gaps = 3/106 (2%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
SF ITDPS+ +PIV+AS FL +G+ E+IG+N R QGP T T+ E+ + I E
Sbjct: 10 SFCITDPSLKDNPIVYASASFLSTTGYPLDEVIGKNCRFLQGPGTFPGTVAELAKGIAEG 69
Query: 90 RPIEVNLLNYKKDGTPFW-MLFKMSLVFGKEDGRATHFVAVQVPIV 134
V +LNYKKDGTPFW LF SL + R ++V VQ+P+
Sbjct: 70 TDTTVTILNYKKDGTPFWNQLFVASLR--DINKRVVNYVGVQIPVA 113
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
+L ++SF + DP L D P+VYAS +FL TGY +EV+G+NCRFL G T + ++
Sbjct: 3 TLQSAQRSFCITDPSLKDNPIVYASASFLSTTGYPLDEVIGKNCRFLQGPGTFPGTVAEL 62
Query: 306 SIAIS 310
+ I+
Sbjct: 63 AKGIA 67
>gi|350535803|ref|NP_001234214.1| phototropin-1 [Solanum lycopersicum]
gi|151176133|gb|ABN42185.2| phototropin-1 [Solanum lycopersicum]
Length = 1018
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 69/109 (63%), Gaps = 1/109 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+ T+ +I
Sbjct: 492 TLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVKKI 551
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
R+AI + + V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 552 RQAIDNQTDVTVQLINYTKTGKKFWNLFHLQPMRDQK-GEVQYFIGVQL 599
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 73/124 (58%), Gaps = 5/124 (4%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL +F ++D + +PI++AS GF KM+G++ E+IGRN R QG T+ +
Sbjct: 194 LRDALSTFQQTFVVSDATKPDYPILYASAGFFKMTGYTSKEVIGRNCRFMQGSGTDPEDV 253
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPIVSRKH 138
IREA++ LLNYKKDGTPFW L ++ + K+D G+ F+ +QV + KH
Sbjct: 254 ATIREALQSGSTYCGRLLNYKKDGTPFWNLLTIAPI--KDDAGKVLKFIGMQVEV--SKH 309
Query: 139 MRNS 142
S
Sbjct: 310 TEGS 313
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 50/67 (74%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 489 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATV 548
Query: 303 YQVSIAI 309
++ AI
Sbjct: 549 KKIRQAI 555
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 41/64 (64%)
Query: 235 GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG 294
G+ +S L +L +Q+FV+ D PD P++YAS F K+TGY EV+G+NCRF+ G
Sbjct: 186 GIPRVSEDLRDALSTFQQTFVVSDATKPDYPILYASAGFFKMTGYTSKEVIGRNCRFMQG 245
Query: 295 VDTD 298
TD
Sbjct: 246 SGTD 249
>gi|20338415|gb|AAM15725.1| phototropin 1 [Pisum sativum]
Length = 976
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 71/117 (60%), Gaps = 1/117 (0%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R L + L+ + +F ITDP + +PI+FAS FL+++ +SR EI+G+N R QGP T
Sbjct: 434 RKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGKNCRFLQGPET 493
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+ T+ +IREAI + + V L+NY K G FW LF + + + G +F+ VQ+
Sbjct: 494 DPATVRKIREAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDHK-GEVQYFIGVQL 549
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 69/123 (56%), Gaps = 3/123 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL +F ++D + +PI++AS GF KM+G++ E+IGRN R QG T+ +
Sbjct: 156 LKDALSAFQQTFVVSDATKPDYPILYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPDDV 215
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
IREA+ + LLNYKKDGTPFW L +S + +DG + + V + KH
Sbjct: 216 ARIREALEGGKSFCGRLLNYKKDGTPFWNLLTISPI-KDDDGNVLKLIGMLVEV--NKHT 272
Query: 140 RNS 142
S
Sbjct: 273 EGS 275
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 50/67 (74%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 439 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGKNCRFLQGPETDPATV 498
Query: 303 YQVSIAI 309
++ AI
Sbjct: 499 RKIREAI 505
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 46/75 (61%)
Query: 235 GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG 294
G +S L +L +Q+FV+ D PD P++YAS F K+TGY EV+G+NCRFL G
Sbjct: 148 GFPRVSEDLKDALSAFQQTFVVSDATKPDYPILYASAGFFKMTGYTSKEVIGRNCRFLQG 207
Query: 295 VDTDTTVLYQVSIAI 309
DTD + ++ A+
Sbjct: 208 ADTDPDDVARIREAL 222
>gi|424875449|ref|ZP_18299111.1| PAS domain S-box [Rhizobium leguminosarum bv. viciae WSM1455]
gi|393171150|gb|EJC71197.1| PAS domain S-box [Rhizobium leguminosarum bv. viciae WSM1455]
Length = 375
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 68/105 (64%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PI+F + F KM+G+S E+IGRN R+ QGP T+RRT+ IR+++ + I
Sbjct: 41 VTDPAQHDNPIIFCNAAFEKMTGYSNDELIGRNCRLLQGPETDRRTVGHIRDSVARGQDI 100
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
V++LNY+KDG+ FW +S V E GR +F A Q+ + K
Sbjct: 101 SVDILNYRKDGSTFWNALFISPVRDDE-GRIIYFFASQLDFTTVK 144
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 32/48 (66%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+ ++ DP D P+++ + AF K+TGY +E++G+NCR L G +TD
Sbjct: 36 RMPMIVTDPAQHDNPIIFCNAAFEKMTGYSNDELIGRNCRLLQGPETD 83
>gi|415921429|ref|ZP_11554531.1| Sensor protein [Herbaspirillum frisingense GSF30]
gi|407760818|gb|EKF70018.1| Sensor protein [Herbaspirillum frisingense GSF30]
Length = 537
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 68/105 (64%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
++DP+ +PI+F + F+ M+G+SRA++IG+N R QGP T+R + ++REA+ E R I
Sbjct: 43 VSDPNQPDNPIIFVNNAFINMTGYSRADVIGKNCRFLQGPETDRAVVAQVREAVLERREI 102
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
LLNY+K+G+ FW +S V+ + G +F + Q+ I R+
Sbjct: 103 ATELLNYRKNGSTFWNALFISPVY-DQHGELKYFFSSQLDISRRR 146
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 42/59 (71%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ ++ DP+ PD P+++ ++AF+ +TGY R +V+G+NCRFL G +TD V+ QV A+
Sbjct: 38 RMPMIVSDPNQPDNPIIFVNNAFINMTGYSRADVIGKNCRFLQGPETDRAVVAQVREAV 96
>gi|456352370|dbj|BAM86815.1| putative sensor histidine kinase with PAS/PAC and response
regulator receiver domains [Agromonas oligotrophica S58]
Length = 534
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 67/105 (63%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP + +PI+FA+R F++M+G+ AEI+G N R QGP T+R T+ IR AI + +
Sbjct: 42 VTDPRQNDNPILFANRAFIEMTGYDLAEIVGTNCRFLQGPDTDRETVAAIRSAIANRQDV 101
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
V +LNY+K+G FW +S V+ + DG +F A Q+ + R+
Sbjct: 102 AVEILNYRKNGAAFWNALFISPVYNR-DGELVYFFASQLDVSRRR 145
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 42/68 (61%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP D P+++A+ AF+++TGYD E+VG NCRFL G DTD +
Sbjct: 29 FFAAVETTRMPMIVTDPRQNDNPILFANRAFIEMTGYDLAEIVGTNCRFLQGPDTDRETV 88
Query: 303 YQVSIAIS 310
+ AI+
Sbjct: 89 AAIRSAIA 96
>gi|433638189|ref|YP_007283949.1| PAS domain S-box [Halovivax ruber XH-70]
gi|433289993|gb|AGB15816.1| PAS domain S-box [Halovivax ruber XH-70]
Length = 674
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 71/130 (54%), Gaps = 3/130 (2%)
Query: 10 QSFNNRYTLWVHE-ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM 68
+ ++R V E A+DE P ITDP +P+V+ + F ++G+ +E IGRN R
Sbjct: 141 EQLDDREERRVKERAMDEAPVGIAITDPDRPDNPLVYVNDSFEALTGYGPSETIGRNCRF 200
Query: 69 FQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVA 128
QGP T+ + ++R AI P+ V L NY+ DG FW +++ V E G+ THFV
Sbjct: 201 LQGPETDPDAVAKLRAAIDAAEPVAVELQNYRADGEVFWNRVEIAPV--TEHGQVTHFVG 258
Query: 129 VQVPIVSRKH 138
Q + +RK
Sbjct: 259 YQTDVTARKE 268
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ DP PD P+VY +D+F LTGY +E +G+NCRFL G +TD + ++ AI
Sbjct: 163 IAITDPDRPDNPLVYVNDSFEALTGYGPSETIGRNCRFLQGPETDPDAVAKLRAAI 218
>gi|12040650|gb|AAB41023.2| phototropin-like protein PsPK4 [Pisum sativum]
Length = 976
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 71/117 (60%), Gaps = 1/117 (0%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R L + L+ + +F ITDP + +PI+FAS FL+++ +SR EI+G+N R QGP T
Sbjct: 434 RKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGKNCRFLQGPET 493
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+ T+ +IREAI + + V L+NY K G FW LF + + + G +F+ VQ+
Sbjct: 494 DPATVRKIREAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDHK-GEVQYFIGVQL 549
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 69/123 (56%), Gaps = 3/123 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL +F ++D + +PI++AS GF KM+G++ E+IGRN R QG T+ +
Sbjct: 156 LKDALSAFQQTFVVSDATKPDYPILYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPDDV 215
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
IREA+ + LLNYKKDGTPFW L +S + +DG + + V + KH
Sbjct: 216 ARIREALEGGKSFCGRLLNYKKDGTPFWNLLTISPI-KDDDGNVLKLIGMLVEV--NKHT 272
Query: 140 RNS 142
S
Sbjct: 273 EGS 275
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 50/67 (74%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 439 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGKNCRFLQGPETDPATV 498
Query: 303 YQVSIAI 309
++ AI
Sbjct: 499 RKIREAI 505
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 46/75 (61%)
Query: 235 GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG 294
G +S L +L +Q+FV+ D PD P++YAS F K+TGY EV+G+NCRFL G
Sbjct: 148 GFPRVSEDLKDALSAFQQTFVVSDATKPDYPILYASAGFFKMTGYTSKEVIGRNCRFLQG 207
Query: 295 VDTDTTVLYQVSIAI 309
DTD + ++ A+
Sbjct: 208 ADTDPDDVARIREAL 222
>gi|33357429|pdb|1N9L|A Chain A, Crystal Structure Of The Phot-lov1 Domain From
Chlamydomonas Reinhardtii In The Dark State.
gi|33357432|pdb|1N9N|A Chain A, Crystal Structure Of The Phot-Lov1 Domain From
Chlamydomonas Reinhardtii In Illuminated State. Data Set
Of A Single Crystal.
gi|33357433|pdb|1N9O|A Chain A, Crystal Structure Of The Phot-Lov1 Domain From
Chlamydomonas Reinhardtii In Illuminated State.
Composite Data Set
Length = 109
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+F + D ++ P+V+AS GF M+G+ E++G N R QG T+ + + +IR+AI++
Sbjct: 5 TFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQKIRDAIKKG 64
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135
V LLNY+KDGTPFW L ++ + DGR + FV VQV + S
Sbjct: 65 EACSVRLLNYRKDGTPFWNLLTVTPI-KTPDGRVSKFVGVQVDVTS 109
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 40/60 (66%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
++ +FV+ D LPD P+VYAS+ F +TGY +EV+G NCRFL G TD + ++ AI
Sbjct: 2 LRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQKIRDAI 61
>gi|448530974|ref|ZP_21620808.1| bacterio-opsin activator [Halorubrum hochstenium ATCC 700873]
gi|445707414|gb|ELZ59268.1| bacterio-opsin activator [Halorubrum hochstenium ATCC 700873]
Length = 667
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 71/118 (60%), Gaps = 1/118 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
V A+++ P +I+DP + +P+V+ + + + +G+S E++GRN R QGP T+ T+
Sbjct: 142 VTRAVEDAPIGISISDPDLPDYPLVYVNDAWREHTGYSVEEVLGRNPRFLQGPGTDPETV 201
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
EI EAI E + V + NY++DGTPFW ++ V+ E+G H+V Q + RK
Sbjct: 202 EEIAEAIGNEEEVTVEIRNYRRDGTPFWNELTVAPVY-DEEGDLAHYVGFQNDVSERK 258
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 2/109 (1%)
Query: 201 KRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPH 260
K+ A +ID ++S ++ S +G R + ++ + ++ + DP
Sbjct: 102 KKNGAASIDRLVSDVSAVS--SGVPASEPRQDVSDHEPTAAEVTRAVEDAPIGISISDPD 159
Query: 261 LPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
LPD P+VY +DA+ + TGY EV+G+N RFL G TD + +++ AI
Sbjct: 160 LPDYPLVYVNDAWREHTGYSVEEVLGRNPRFLQGPGTDPETVEEIAEAI 208
>gi|448688370|ref|ZP_21694203.1| HTR-like protein [Haloarcula japonica DSM 6131]
gi|445779431|gb|EMA30361.1| HTR-like protein [Haloarcula japonica DSM 6131]
Length = 748
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 114/244 (46%), Gaps = 23/244 (9%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ A+DE P TIT P +PI +A+R FL+++G++ +E++GRN R QG T +
Sbjct: 257 IKRAMDEAPIGITITSPEQDENPISYANRQFLELTGYTESEVLGRNCRFLQGEETKSEPV 316
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
+R AI + P+ V L NY+KDGT FW ++ V +DG ++V Q I K
Sbjct: 317 DVMRAAIDADEPVSVELRNYRKDGTMFWNQVSIAPVR-DDDGAVVNYVGFQQDITEWKEH 375
Query: 140 RNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIEDSCEASDL 199
+ SE + +++ R EV + VL L+++ ED+ L
Sbjct: 376 ERRLKALSE-----SVHDLIRADTREEVAEIGVETARTVLGLEANTIHFYDEDN---RTL 427
Query: 200 EKRKAATAIDNILSVLTHYS---QLTGRLV-CGKRCSLPGM----------GFISSSLYI 245
E A+ AI +++ L ++ + R+ CG ++ + I S LY+
Sbjct: 428 EPVAASDAIYDLVDDLPTFTPGDSIAWRVYECGDALAVDDVHADPDIYNPDTLIKSELYL 487
Query: 246 SLGR 249
LG
Sbjct: 488 PLGE 491
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 7/58 (12%)
Query: 247 LGRIKQSF-------VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDT 297
L RIK++ + P + P+ YA+ FL+LTGY +EV+G+NCRFL G +T
Sbjct: 254 LSRIKRAMDEAPIGITITSPEQDENPISYANRQFLELTGYTESEVLGRNCRFLQGEET 311
>gi|149286424|gb|ABR23227.1| hisactophilin/phototropin PHY3 fusion protein [Expression vector
pNCO-HISACT-ACVLOV2-syn]
Length = 234
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
Query: 25 DELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIRE 84
+ + SF ITDP + +PI+FAS FL+++ ++R E++G N R QG T+R+ + IR+
Sbjct: 127 ERIGKSFVITDPRLPDNPIIFASDRFLELTEYTREEVLGNNCRFLQGRGTDRKAVQLIRD 186
Query: 85 AIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
A++E+R + V +LNY K G FW LF + V E+G +F+ VQ
Sbjct: 187 AVKEQRDVTVQVLNYTKGGRAFWNLFHLQ-VMRDENGDVQYFIGVQ 231
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 45/71 (63%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
I S L RI +SFV+ DP LPD P+++ASD FL+LT Y R EV+G NCRFL G TD
Sbjct: 118 IGSGLVPRGERIGKSFVITDPRLPDNPIIFASDRFLELTEYTREEVLGNNCRFLQGRGTD 177
Query: 299 TTVLYQVSIAI 309
+ + A+
Sbjct: 178 RKAVQLIRDAV 188
>gi|449138117|ref|ZP_21773413.1| signal transduction histidine kinase with CheB and CheR activity
[Rhodopirellula europaea 6C]
gi|448883278|gb|EMB13815.1| signal transduction histidine kinase with CheB and CheR activity
[Rhodopirellula europaea 6C]
Length = 1637
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
EA+ + ITD S+ +PI FA+ GF++M+GFS EIIGRN R QG T+ T++
Sbjct: 991 EAVQSAANGIVITDCSLDDNPITFANNGFIEMTGFSEQEIIGRNCRFLQGEHTDDETVLR 1050
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
IR A++ + + NY+K+G PFW ++ V ED THFV +Q + R
Sbjct: 1051 IRRALKRGESVRELIKNYRKNGEPFWNDLYITPVH-DEDNTLTHFVGIQNDVTER 1104
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 36/56 (64%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
V+ D L D P+ +A++ F+++TG+ E++G+NCRFL G TD + ++ A+
Sbjct: 1000 IVITDCSLDDNPITFANNGFIEMTGFSEQEIIGRNCRFLQGEHTDDETVLRIRRAL 1055
>gi|374852440|dbj|BAL55373.1| signal transduction protein [uncultured gamma proteobacterium]
Length = 747
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 65/103 (63%), Gaps = 1/103 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
ITD +PI++A+ FL+++G+S E++G+N R QGP T+ I EIR A++E R
Sbjct: 393 ITDALKPDNPIIYANPAFLRITGYSLEELLGKNPRFLQGPETDSEAIAEIRAALKEGRDC 452
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135
+ L NY+KDGTPFW +S V E+G+ THFV VQ +
Sbjct: 453 HLTLKNYRKDGTPFWNELLISPV-RDENGKLTHFVGVQTDVTE 494
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 38/56 (67%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
++ D PD P++YA+ AFL++TGY E++G+N RFL G +TD+ + ++ A+
Sbjct: 392 LITDALKPDNPIIYANPAFLRITGYSLEELLGKNPRFLQGPETDSEAIAEIRAALK 447
>gi|380512305|ref|ZP_09855712.1| histidine kinase [Xanthomonas sacchari NCPPB 4393]
Length = 544
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 67/110 (60%), Gaps = 1/110 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP +PI+F +R FL+M+G+SR E+IG N R QGP T+R T+ +REAI +
Sbjct: 45 VTDPRQPDNPIIFVNRAFLEMTGYSRDELIGNNCRFLQGPDTDRETVRNVREAIATHDEV 104
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
V +LNY+KDG+ FW +S V+ + G +F Q+ + R+ ++
Sbjct: 105 AVEILNYRKDGSSFWNALYISPVY-DDRGELVYFFGSQLDVSRRRDAEDA 153
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 45/73 (61%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S + ++ + ++ DP PD P+++ + AFL++TGY R+E++G NCRFL G DTD
Sbjct: 29 SDIFFAAVQTTRMPMIVTDPRQPDNPIIFVNRAFLEMTGYSRDELIGNNCRFLQGPDTDR 88
Query: 300 TVLYQVSIAISPY 312
+ V AI+ +
Sbjct: 89 ETVRNVREAIATH 101
>gi|421610035|ref|ZP_16051219.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
activity [Rhodopirellula baltica SH28]
gi|408499093|gb|EKK03568.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
activity [Rhodopirellula baltica SH28]
Length = 1637
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 66/115 (57%), Gaps = 1/115 (0%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
EA+ + ITD S+ HPI F ++GF M+GFS EIIGRN R QG T++ T++
Sbjct: 991 EAVQSAANGIVITDCSLEDHPISFVNKGFTDMTGFSEQEIIGRNCRFLQGEHTDKETVLR 1050
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
IR A+ + + NY+K+G PFW ++ V E+G THFV VQ + R
Sbjct: 1051 IRRALGRGESVRELIKNYRKNGEPFWNDLYITPVH-DENGILTHFVGVQNDVTER 1104
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
V+ D L D P+ + + F +TG+ E++G+NCRFL G TD + ++ A+
Sbjct: 1000 IVITDCSLEDHPISFVNKGFTDMTGFSEQEIIGRNCRFLQGEHTDKETVLRIRRAL 1055
>gi|296533497|ref|ZP_06896072.1| sensor histidine kinase/response regulator [Roseomonas cervicalis
ATCC 49957]
gi|296266172|gb|EFH12222.1| sensor histidine kinase/response regulator [Roseomonas cervicalis
ATCC 49957]
Length = 537
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 74/122 (60%), Gaps = 1/122 (0%)
Query: 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
H A++ + D PIVFA+ FL+M+G+++ EI+G N R QGP T+R +I
Sbjct: 28 HIAVETTRMPMIVADARAPDMPIVFANHAFLQMTGYTQDEIVGTNCRFLQGPETDRASID 87
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140
+R+A+REER I + +LNY+K+G+ FW +S V+ +DGR +F Q+ + R+
Sbjct: 88 AVRQALREEREIAIEILNYRKNGSTFWNALFISPVY-DDDGRLRYFFGSQLDVSRRRDAE 146
Query: 141 NS 142
++
Sbjct: 147 DA 148
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 44/67 (65%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+I++ + ++ D PDMP+V+A+ AFL++TGY ++E+VG NCRFL G +TD +
Sbjct: 27 FHIAVETTRMPMIVADARAPDMPIVFANHAFLQMTGYTQDEIVGTNCRFLQGPETDRASI 86
Query: 303 YQVSIAI 309
V A+
Sbjct: 87 DAVRQAL 93
>gi|410090959|ref|ZP_11287539.1| histidine kinase [Pseudomonas viridiflava UASWS0038]
gi|409761826|gb|EKN46878.1| histidine kinase [Pseudomonas viridiflava UASWS0038]
Length = 503
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PI+FA++ FL+M+G++ EIIG N R QGP T+R + IR+AI E I
Sbjct: 5 VTDPNSEDNPIIFANKAFLEMTGYASEEIIGSNCRFLQGPETDRAVVQTIRDAIHERNDI 64
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+LNY+KDG+ FW +S V+ + G +F A Q+ I R+
Sbjct: 65 STEILNYRKDGSSFWNALFISPVY-NDAGDLIYFFASQLDISRRR 108
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 38/56 (67%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
++ DP+ D P+++A+ AFL++TGY E++G NCRFL G +TD V+ + AI
Sbjct: 3 MIVTDPNSEDNPIIFANKAFLEMTGYASEEIIGSNCRFLQGPETDRAVVQTIRDAI 58
>gi|6688928|emb|CAB65325.1| non-phototropic hypocotyl NPH1 [Oryza sativa Indica Group]
Length = 921
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ ++R EI+GRN R QGP T+R + +IR
Sbjct: 408 LERIEKNFVITDPRLPDNPIIFASDSFLQLTEYNREEILGRNCRFLQGPETDRAIVRKIR 467
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AI + + V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 468 DAIDNQAEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGVQL 514
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL +F ++D + HPI++AS GF M+G++ E++GRN R QG T+ I +I
Sbjct: 130 ALSAFQQTFVVSDATRPNHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDPHEIDKI 189
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
R+A+ +LNYKKDGTPFW L ++ + EDGR F+ +QV +
Sbjct: 190 RQALANGSNYCGRILNYKKDGTPFWNLLTIAPI-KDEDGRLLKFIGMQVEV 239
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 52/67 (77%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y+R E++G+NCRFL G +TD ++
Sbjct: 404 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYNREEILGRNCRFLQGPETDRAIV 463
Query: 303 YQVSIAI 309
++ AI
Sbjct: 464 RKIRDAI 470
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L +Q+FV+ D P+ P++YAS F +TGY EVVG+NCRFL G TD
Sbjct: 123 VSEELRAALSAFQQTFVVSDATRPNHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTD 182
Query: 299 TTVLYQVSIAIS 310
+ ++ A++
Sbjct: 183 PHEIDKIRQALA 194
>gi|452077702|gb|AGF93651.1| signal-transducing histidine kinase [uncultured organism]
Length = 732
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 66/116 (56%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P TITDP +P+++ + GF ++G+S+ E +GRN R QG T R + E+
Sbjct: 266 AMDEAPVGITITDPDREDNPMIYVNEGFEALTGYSKEEAVGRNCRFLQGEATRERPVAEM 325
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
R AI P+ V L NY+KDG+ FW ++ V + G T++V Q I RK
Sbjct: 326 RRAIDRAEPVSVALRNYRKDGSQFWDRVSIAPVRDRA-GTVTNYVGFQEDITERKE 380
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQ--------- 304
+ DP D PM+Y ++ F LTGY + E VG+NCRFL G T + +
Sbjct: 274 ITITDPDREDNPMIYVNEGFEALTGYSKEEAVGRNCRFLQGEATRERPVAEMRRAIDRAE 333
Query: 305 -VSIAISPYPKKKSIYMEYVRV 325
VS+A+ Y K S + + V +
Sbjct: 334 PVSVALRNYRKDGSQFWDRVSI 355
>gi|388583576|gb|EIM23877.1| hypothetical protein WALSEDRAFT_66770 [Wallemia sebi CBS 633.66]
Length = 753
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 69/117 (58%), Gaps = 5/117 (4%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L DSF +T+P + HPIV +S GF K++GF R IIGRN R QGP T + IR+A+
Sbjct: 386 LGDSFVLTNPRLRDHPIVMSSLGFTKVTGFDRTTIIGRNCRFLQGPGTAPAAVQRIRDAL 445
Query: 87 REERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV----SRKHM 139
PI LLNY++DGTPF+ L + + G+ +F+ QV + SRK++
Sbjct: 446 NNAEPITELLLNYRRDGTPFFCLVNI-IPLRDTKGQVAYFIGGQVNVTGILSSRKNL 501
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPY 312
SFVL +P L D P+V +S F K+TG+DR ++G+NCRFL G T + ++ A++
Sbjct: 389 SFVLTNPRLRDHPIVMSSLGFTKVTGFDRTTIIGRNCRFLQGPGTAPAAVQRIRDALNNA 448
Query: 313 PKKKSIYMEYVR 324
+ + Y R
Sbjct: 449 EPITELLLNYRR 460
>gi|302187367|ref|ZP_07264040.1| histidine kinase [Pseudomonas syringae pv. syringae 642]
Length = 534
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 66/107 (61%), Gaps = 1/107 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
+TDP+ +PI+FA+R FL+M+G+S EIIG N R QGP T+R + IR+AI E
Sbjct: 35 MVVTDPNRPDNPIIFANRAFLEMTGYSSEEIIGINCRFLQGPDTDRAAVQSIRDAIEERV 94
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
I +LNY+KDG+ FW +S V+ + G +F A Q+ I R+
Sbjct: 95 DISTEILNYRKDGSSFWNALFISPVY-NDAGELIYFFASQLDISRRR 140
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 42/67 (62%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + V+ DP+ PD P+++A+ AFL++TGY E++G NCRFL G DTD +
Sbjct: 24 FFAAVETTRMPMVVTDPNRPDNPIIFANRAFLEMTGYSSEEIIGINCRFLQGPDTDRAAV 83
Query: 303 YQVSIAI 309
+ AI
Sbjct: 84 QSIRDAI 90
>gi|163850308|ref|YP_001638351.1| PAS sensor protein [Methylobacterium extorquens PA1]
gi|163661913|gb|ABY29280.1| PAS sensor protein [Methylobacterium extorquens PA1]
Length = 488
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 64/102 (62%), Gaps = 1/102 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
ITDP +PIVF + F K++G+SR EI+GRN R QGP T+ R + IR+A+ P+
Sbjct: 37 ITDPHRPDNPIVFVNGAFSKLTGYSREEILGRNCRFLQGPETDPRDVARIRDAVERRVPV 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
E++LLN+KK G FW +S VF E G+ T+F A Q +
Sbjct: 97 EIDLLNHKKSGEVFWNRLLISPVFDDE-GQLTYFFASQFDVT 137
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 40/59 (67%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ ++ DPH PD P+V+ + AF KLTGY R E++G+NCRFL G +TD + ++ A+
Sbjct: 32 RMPMLITDPHRPDNPIVFVNGAFSKLTGYSREEILGRNCRFLQGPETDPRDVARIRDAV 90
>gi|448319142|ref|ZP_21508648.1| bacterio-opsin activator [Natronococcus jeotgali DSM 18795]
gi|445596756|gb|ELY50840.1| bacterio-opsin activator [Natronococcus jeotgali DSM 18795]
Length = 619
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 70/117 (59%), Gaps = 1/117 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++E P TI+DPS +P+V+ + + +++G+ +++GRN R+ QG ++ + E+
Sbjct: 124 AINEAPVGITISDPSREDNPLVYINEAYEEITGYDYEDVVGRNCRILQGEASDPEAVAEM 183
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
R I EERP+ V L NY+KDGT FW ++ V + G TH+V Q + +RK
Sbjct: 184 RTGIDEERPVTVELTNYRKDGTAFWNEVTIAPVR-NDAGEVTHYVGFQNDVTARKEA 239
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ DP D P+VY ++A+ ++TGYD +VVG+NCR L G +D + ++ I
Sbjct: 132 ITISDPSREDNPLVYINEAYEEITGYDYEDVVGRNCRILQGEASDPEAVAEMRTGI 187
>gi|218528865|ref|YP_002419681.1| signal transduction histidine kinase [Methylobacterium extorquens
CM4]
gi|218521168|gb|ACK81753.1| signal transduction histidine kinase [Methylobacterium extorquens
CM4]
Length = 488
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 64/102 (62%), Gaps = 1/102 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
ITDP +PIVF + F K++G+SR EI+GRN R QGP T+ R + IR+A+ P+
Sbjct: 37 ITDPHRPDNPIVFVNGAFSKLTGYSREEILGRNCRFLQGPETDPRDVARIRDAVERRVPV 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
E++LLN+KK G FW +S VF E G+ T+F A Q +
Sbjct: 97 EIDLLNHKKSGEVFWNRLLISPVFDDE-GQLTYFFASQFDVT 137
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 40/59 (67%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ ++ DPH PD P+V+ + AF KLTGY R E++G+NCRFL G +TD + ++ A+
Sbjct: 32 RMPMLITDPHRPDNPIVFVNGAFSKLTGYSREEILGRNCRFLQGPETDPRDVARIRDAV 90
>gi|357454021|ref|XP_003597291.1| Phototropin [Medicago truncatula]
gi|355486339|gb|AES67542.1| Phototropin [Medicago truncatula]
Length = 1053
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 68/109 (62%), Gaps = 1/109 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+ T+ +I
Sbjct: 434 TLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVRKI 493
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
REAI + + V L+NY + G FW LF + + + G +F+ VQ+
Sbjct: 494 REAIDNQTEVTVQLINYTRTGKKFWNLFHLQPMRDHK-GEVQYFIGVQL 541
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 75/134 (55%), Gaps = 7/134 (5%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL +F ++D + +PI++AS GF M+G++ E+IGRN R QG T+ + +
Sbjct: 148 LKDALSAFQQTFVVSDATKPDYPIMYASAGFFNMTGYTSKEVIGRNCRFLQGADTDPQDV 207
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI------ 133
+IREA+ + LLNYKKDGTPFW L +S + +DG + + V +
Sbjct: 208 AKIREALEGGKSYCGRLLNYKKDGTPFWNLLTISPI-KDDDGNVLKLIGMLVEVNKHTEG 266
Query: 134 VSRKHMRNSGMSYS 147
K++R +G+ S
Sbjct: 267 SKEKNLRPNGLPES 280
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 50/67 (74%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 431 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATV 490
Query: 303 YQVSIAI 309
++ AI
Sbjct: 491 RKIREAI 497
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 45/75 (60%)
Query: 235 GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG 294
G +S L +L +Q+FV+ D PD P++YAS F +TGY EV+G+NCRFL G
Sbjct: 140 GFPRVSEDLKDALSAFQQTFVVSDATKPDYPIMYASAGFFNMTGYTSKEVIGRNCRFLQG 199
Query: 295 VDTDTTVLYQVSIAI 309
DTD + ++ A+
Sbjct: 200 ADTDPQDVAKIREAL 214
>gi|308174707|ref|YP_003921412.1| blue light GTP-binding receptor [Bacillus amyloliquefaciens DSM 7]
gi|384160548|ref|YP_005542621.1| blue light GTP-binding receptor [Bacillus amyloliquefaciens TA208]
gi|384165490|ref|YP_005546869.1| blue light GTP-binding receptor [Bacillus amyloliquefaciens LL3]
gi|384169636|ref|YP_005551014.1| blue light GTP-binding receptor [Bacillus amyloliquefaciens XH7]
gi|307607571|emb|CBI43942.1| blue light GTP-binding receptor [Bacillus amyloliquefaciens DSM 7]
gi|328554636|gb|AEB25128.1| blue light GTP-binding receptor [Bacillus amyloliquefaciens TA208]
gi|328913045|gb|AEB64641.1| blue light GTP-binding receptor [Bacillus amyloliquefaciens LL3]
gi|341828915|gb|AEK90166.1| blue light GTP-binding receptor [Bacillus amyloliquefaciens XH7]
Length = 261
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 72/119 (60%), Gaps = 3/119 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +ALD ITDPS+ +PI++ ++GF+ M+G+S EI+G+N R QG T+R+ +
Sbjct: 16 IKKALDHARIGVVITDPSLEDNPIIYTNQGFMDMTGYSSEEILGKNCRFLQGKETDRKQV 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
+IR++++ + I V L N KKDGTPFW + ++ ++ +FV Q I +K
Sbjct: 76 AKIRKSLKHKEKITVRLKNVKKDGTPFWNELNIDPLYVED---KLYFVGFQKDITEQKE 131
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+L + V+ DP L D P++Y + F+ +TGY E++G+NCRFL G +TD
Sbjct: 19 ALDHARIGVVITDPSLEDNPIIYTNQGFMDMTGYSSEEILGKNCRFLQGKETD 71
>gi|428312493|ref|YP_007123470.1| PAS domain-containing protein [Microcoleus sp. PCC 7113]
gi|428254105|gb|AFZ20064.1| PAS domain S-box [Microcoleus sp. PCC 7113]
Length = 662
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 76/122 (62%), Gaps = 4/122 (3%)
Query: 20 VHEALDELPDSFTITDPS---ISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNR 76
+ A++ D IT+ G +++ ++ F +++G+ E++GR R+ QGP+T+R
Sbjct: 420 LESAVENTQDGILITEAKHIDAPGPELLYVNQAFTRITGYDLTEVLGRTPRLLQGPKTDR 479
Query: 77 RTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+ +IR A++E++P++V LLNY+KDG+ FW+ + + KE G+ TH+VA+Q I R
Sbjct: 480 SQLDKIRTALQEQKPVQVELLNYRKDGSEFWVELNIVPIASKE-GKVTHWVALQREITER 538
Query: 137 KH 138
K
Sbjct: 539 KQ 540
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 262 PDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYPKKKSIYME 321
P ++Y + AF ++TGYD EV+G+ R L G TD + L ++ A+ ++K + +E
Sbjct: 442 PGPELLYVNQAFTRITGYDLTEVLGRTPRLLQGPKTDRSQLDKIRTALQ---EQKPVQVE 498
Query: 322 YV 323
+
Sbjct: 499 LL 500
>gi|240137379|ref|YP_002961850.1| sensory transduction histidine kinase of the HWE family
[Methylobacterium extorquens AM1]
gi|418059067|ref|ZP_12697026.1| signal transduction histidine kinase [Methylobacterium extorquens
DSM 13060]
gi|240007347|gb|ACS38573.1| putative sensory transduction histidine kinase of the HWE family
[Methylobacterium extorquens AM1]
gi|373567409|gb|EHP93379.1| signal transduction histidine kinase [Methylobacterium extorquens
DSM 13060]
Length = 488
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 64/102 (62%), Gaps = 1/102 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
ITDP +PIVF + F K++G+SR EI+GRN R QGP T+ R + IR+A+ P+
Sbjct: 37 ITDPHRPDNPIVFVNGAFSKLTGYSREEILGRNCRFLQGPETDPRDVARIRDAVERRVPV 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
E++LLN+KK G FW +S VF E G+ T+F A Q +
Sbjct: 97 EIDLLNHKKSGEVFWNRLLISPVFDDE-GQLTYFFASQFDVT 137
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 40/59 (67%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ ++ DPH PD P+V+ + AF KLTGY R E++G+NCRFL G +TD + ++ A+
Sbjct: 32 RMPMLITDPHRPDNPIVFVNGAFSKLTGYSREEILGRNCRFLQGPETDPRDVARIRDAV 90
>gi|448560681|ref|ZP_21634129.1| bacterio-opsin activator [Haloferax prahovense DSM 18310]
gi|445722331|gb|ELZ73994.1| bacterio-opsin activator [Haloferax prahovense DSM 18310]
Length = 658
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 72/141 (51%), Gaps = 3/141 (2%)
Query: 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
+A+DE P T+ D S+ P+V+ + F M+G+S +GRN R QGP T+ +
Sbjct: 136 EQAIDEAPVGITVADCSLPDRPLVYVNEAFEAMTGYSADAALGRNCRYLQGPNTDPERVA 195
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140
E+R AI E V LLNY+ +G FW ++ + G DG TH+V Q I R
Sbjct: 196 ELRRAIEAEESASVELLNYRANGETFWNRVDVAPLSGP-DGEVTHYVGFQTDITERVRAE 254
Query: 141 NSGMSYSE--DGGGSRLREIV 159
+ Y+E D RL+ +V
Sbjct: 255 TAAERYAERVDEERERLQTLV 275
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 35/56 (62%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ D LPD P+VY ++AF +TGY + +G+NCR+L G +TD + ++ AI
Sbjct: 146 ITVADCSLPDRPLVYVNEAFEAMTGYSADAALGRNCRYLQGPNTDPERVAELRRAI 201
>gi|427410482|ref|ZP_18900684.1| PAS domain S-box protein [Sphingobium yanoikuyae ATCC 51230]
gi|425712615|gb|EKU75630.1| PAS domain S-box protein [Sphingobium yanoikuyae ATCC 51230]
Length = 460
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 67/102 (65%), Gaps = 1/102 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
ITDP+ + +PIVF + F +++G++ EIIGRN R QGP T+R + +R+AI + I
Sbjct: 3 ITDPNQADNPIVFVNEAFSRLTGYAHQEIIGRNCRFLQGPDTDRNDVARLRDAIAAKTLI 62
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
E++LLNYKKDGT FW +S VF E G+ ++F A Q +
Sbjct: 63 ELDLLNYKKDGTTFWNRVLVSPVFDGE-GQLSYFFASQFDVT 103
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 39/57 (68%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
++ DP+ D P+V+ ++AF +LTGY E++G+NCRFL G DTD + ++ AI+
Sbjct: 1 MLITDPNQADNPIVFVNEAFSRLTGYAHQEIIGRNCRFLQGPDTDRNDVARLRDAIA 57
>gi|297622520|ref|YP_003703954.1| PAS/PAC sensor signal transduction histidine kinase [Truepera
radiovictrix DSM 17093]
gi|297163700|gb|ADI13411.1| PAS/PAC sensor signal transduction histidine kinase [Truepera
radiovictrix DSM 17093]
Length = 530
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 74/119 (62%), Gaps = 5/119 (4%)
Query: 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRT 78
W+ +ALD ++ +TDP+ +PI++ +RGF +++G++R E +GRN R QG T++
Sbjct: 61 WLLDALDATNNTVIVTDPNQEDNPIIYVNRGFEQLTGYTREEALGRNCRFLQGDDTDQEA 120
Query: 79 IMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ---VPIV 134
+ +REA+RE R I V L NY+KDG+ FW ++ V+ DG +F VQ P+V
Sbjct: 121 LPALREAVREGRDIRVVLRNYRKDGSLFWNELYVTAVW--RDGVLAYFFGVQNDITPLV 177
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 23 ALDELPDSFTITDPSIS--GHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
A+++ +S IT + G I + +R F ++SG+ R E++G+ R+ QGP+T+ + +
Sbjct: 189 AVEQADESIVITGAELERPGPQIRYVNRAFERLSGYRRDEVLGKTPRVLQGPKTDPQVLA 248
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
+R+ + +NY+KDG+ F + ++ + G TH+VA Q + R+ +
Sbjct: 249 HLRQRLLGGEVFRGETVNYRKDGSAFVNEWHIAPIRSGA-GEITHWVATQRDVTERRQL 306
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 183 SDDTGLEIEDSCEASDLEKRKAATA-IDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISS 241
S+ +G E +++E A D L L +L R R SL G++
Sbjct: 5 SERSGSRREGEASGAEVEAPGGALGRPDGSLEELAARVRLLERENAALRRSLGDRGWLLD 64
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTV 301
+L + + ++ DP+ D P++Y + F +LTGY R E +G+NCRFL G DTD
Sbjct: 65 ALDAT----NNTVIVTDPNQEDNPIIYVNRGFEQLTGYTREEALGRNCRFLQGDDTDQEA 120
Query: 302 LYQVSIAI 309
L + A+
Sbjct: 121 LPALREAV 128
>gi|254559559|ref|YP_003066654.1| sensory transduction histidine kinase [Methylobacterium extorquens
DM4]
gi|254266837|emb|CAX22636.1| putative SENSORY TRANSDUCTION HISTIDINE KINASE of the HWE family
[Methylobacterium extorquens DM4]
Length = 488
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 64/102 (62%), Gaps = 1/102 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
ITDP +PIVF + F K++G+SR EI+GRN R QGP T+ R + IR+A+ P+
Sbjct: 37 ITDPHRPDNPIVFVNGAFSKLTGYSREEILGRNCRFLQGPETDPRDVARIRDAVERRVPV 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
E++LLN+KK G FW +S VF E G+ T+F A Q +
Sbjct: 97 EIDLLNHKKSGEVFWNRLLISPVFDDE-GQLTYFFASQFDVT 137
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 40/59 (67%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ ++ DPH PD P+V+ + AF KLTGY R E++G+NCRFL G +TD + ++ A+
Sbjct: 32 RMPMLITDPHRPDNPIVFVNGAFSKLTGYSREEILGRNCRFLQGPETDPRDVARIRDAV 90
>gi|24899168|dbj|BAC23098.1| phototropin [Vicia faba]
Length = 963
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 72/124 (58%), Gaps = 1/124 (0%)
Query: 8 IEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGR 67
I Q R + L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R
Sbjct: 425 IAQKREKRKGFDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCR 484
Query: 68 MFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFV 127
QGP T+ T+ +IR AI + + V L+NY K G FW LF + + ++ G +F+
Sbjct: 485 FLQGPETDPATVKKIRYAIDNQTEVTVQLINYTKTGKKFWNLFHLQPMRDQK-GEVQYFI 543
Query: 128 AVQV 131
VQ+
Sbjct: 544 GVQL 547
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 7/134 (5%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL +F ++D + +PI++AS GF M+G++ E+IGRN R QG T+ +
Sbjct: 152 LRDALSAFQQTFVVSDATKPDYPIMYASAGFFSMTGYTSKEVIGRNCRFMQGADTDPNDV 211
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI------ 133
+IREA+ LLNYKKDGT FW L ++ + E G+ + +QV +
Sbjct: 212 AKIREALAAGTSYCGRLLNYKKDGTTFWNLLTIAPI-KDEHGKILKLIGMQVEVSKHTEG 270
Query: 134 VSRKHMRNSGMSYS 147
K +R +G+ S
Sbjct: 271 TKEKMLRPNGLPES 284
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 50/67 (74%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 437 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATV 496
Query: 303 YQVSIAI 309
++ AI
Sbjct: 497 KKIRYAI 503
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 235 GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG 294
G+ +S L +L +Q+FV+ D PD P++YAS F +TGY EV+G+NCRF+ G
Sbjct: 144 GIPRVSEDLRDALSAFQQTFVVSDATKPDYPIMYASAGFFSMTGYTSKEVIGRNCRFMQG 203
Query: 295 VDTDTTVLYQVSIAIS 310
DTD + ++ A++
Sbjct: 204 ADTDPNDVAKIREALA 219
>gi|334117274|ref|ZP_08491366.1| PAS/PAC sensor signal transduction histidine kinase [Microcoleus
vaginatus FGP-2]
gi|333462094|gb|EGK90699.1| PAS/PAC sensor signal transduction histidine kinase [Microcoleus
vaginatus FGP-2]
Length = 630
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 72/126 (57%), Gaps = 2/126 (1%)
Query: 18 LWVHE-ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNR 76
LW+++ A+ FTI D + HPI++ + F M+G+ R EIIG+NGR G T+
Sbjct: 205 LWLYDRAIAASSTGFTIYDATDPEHPIIYCNPAFESMTGYRRQEIIGKNGRFLHGSDTDP 264
Query: 77 RTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+ IR+A++ E +V L NY+KDGT FW F +S V + G+ THF+ VQ I R
Sbjct: 265 AAVEIIRQALQTESECKVILKNYRKDGTAFWNCFSISPVRDRL-GKLTHFIGVQRDITER 323
Query: 137 KHMRNS 142
K +
Sbjct: 324 KQAEEA 329
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYP 313
F + D P+ P++Y + AF +TGY R E++G+N RFL+G DTD + + A+
Sbjct: 219 FTIYDATDPEHPIIYCNPAFESMTGYRRQEIIGKNGRFLHGSDTDPAAVEIIRQALQTES 278
Query: 314 KKKSIYMEY 322
+ K I Y
Sbjct: 279 ECKVILKNY 287
>gi|397620892|gb|EJK65981.1| hypothetical protein THAOC_13120 [Thalassiosira oceanica]
Length = 535
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 70/112 (62%), Gaps = 1/112 (0%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+AL +F +TDPS+ +PIV+A++GFL ++G++ +++GRN R QGP T+ + + +
Sbjct: 393 KALQTAQQNFVVTDPSLPDNPIVYATQGFLNLTGYTLDQVLGRNCRFLQGPETDPKAVEK 452
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
IR AI E + V LLNY+ DGT FW F ++ G T++V VQ +
Sbjct: 453 IRNAIEEGSDMSVCLLNYRVDGTTFWNQFFIA-ALRDAGGNITNYVGVQCKV 503
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 46/68 (67%)
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTV 301
S +L +Q+FV+ DP LPD P+VYA+ FL LTGY ++V+G+NCRFL G +TD
Sbjct: 390 SFIKALQTAQQNFVVTDPSLPDNPIVYATQGFLNLTGYTLDQVLGRNCRFLQGPETDPKA 449
Query: 302 LYQVSIAI 309
+ ++ AI
Sbjct: 450 VEKIRNAI 457
>gi|219118462|ref|XP_002180003.1| hypothetical protein PHATRDRAFT_51933 [Phaeodactylum tricornutum
CCAP 1055/1]
gi|217408260|gb|EEC48194.1| hypothetical protein PHATRDRAFT_51933 [Phaeodactylum tricornutum
CCAP 1055/1]
Length = 142
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 71/120 (59%), Gaps = 4/120 (3%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL +F I+DP++ +PIV+ S+GFL ++G++ +++GRN R QGP T++ + I
Sbjct: 3 ALSGSQQNFAISDPTLPDNPIVYVSQGFLDLTGYTLDQVLGRNCRFLQGPGTDQSAVEVI 62
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI---VSRKHM 139
R+ I E V LLNYK DGTPFW F ++ + E+ H V VQ + V KHM
Sbjct: 63 RKGITEGVDTSVCLLNYKADGTPFWNQFFVASLRDAENNVVNH-VGVQCEVSKAVVEKHM 121
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 39/57 (68%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+L +Q+F + DP LPD P+VY S FL LTGY ++V+G+NCRFL G TD + +
Sbjct: 3 ALSGSQQNFAISDPTLPDNPIVYVSQGFLDLTGYTLDQVLGRNCRFLQGPGTDQSAV 59
>gi|448563671|ref|ZP_21635598.1| PAS sensor protein [Haloferax prahovense DSM 18310]
gi|445717610|gb|ELZ69324.1| PAS sensor protein [Haloferax prahovense DSM 18310]
Length = 732
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE TIT PS PIV+A+ F ++G+ E++G N R+ QGP T
Sbjct: 392 AIDEASVGITITGPSEDDCPIVYANDAFEDLTGYDAEEVLGENHRVLQGPDTAEEDCERF 451
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
REAI +E P V LLNY++DGTPFW +++ V G +DG T+++ Q
Sbjct: 452 REAIADEEPCSVELLNYRRDGTPFWNQSEITPVHG-DDGSVTNYIGFQ 498
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%)
Query: 259 PHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDT 297
P D P+VYA+DAF LTGYD EV+G+N R L G DT
Sbjct: 405 PSEDDCPIVYANDAFEDLTGYDAEEVLGENHRVLQGPDT 443
>gi|27807561|dbj|BAC55265.1| phytochrome 3 [Dryopteris filix-mas]
Length = 686
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + SF ITDP + +PI+FAS FL+++ +SR E++G N R QG T+ + + IR
Sbjct: 493 LERIGHSFVITDPRLPDNPIIFASDQFLELTEYSREEVLGENCRFLQGRDTDLKAVQLIR 552
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
+A++E R I V LLNY + G PFW LF + + K+ G +F+ VQ
Sbjct: 553 DAVKEGRDITVQLLNYTRGGRPFWNLFHLQAMRDKK-GNLQYFIGVQ 598
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 46/67 (68%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI SFV+ DP LPD P+++ASD FL+LT Y R EV+G+NCRFL G DTD +
Sbjct: 489 LATTLERIGHSFVITDPRLPDNPIIFASDQFLELTEYSREEVLGENCRFLQGRDTDLKAV 548
Query: 303 YQVSIAI 309
+ A+
Sbjct: 549 QLIRDAV 555
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 66/130 (50%), Gaps = 15/130 (11%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI--R 87
SF + D PI+FAS GF ++G++ E+IG N R QGP TN + IR+A+ R
Sbjct: 231 SFVVVDALKPDLPIIFASTGFFNLTGYTSREVIGGNCRFLQGPDTNPEDVASIRDAVVPR 290
Query: 88 EERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPIVSRKHMRNSGMSY 146
LLNY+KDG+ FW L ++ + K+D G V VQ+ + Y
Sbjct: 291 GTGTFCGRLLNYRKDGSNFWNLLTIAPI--KDDTGTIVKLVGVQLEV----------SKY 338
Query: 147 SEDGGGSRLR 156
+E +RLR
Sbjct: 339 TEGSRANRLR 348
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
+ SFV++D PD+P+++AS F LTGY EV+G NCRFL G DT+ + + A+
Sbjct: 229 QTSFVVVDALKPDLPIIFASTGFFNLTGYTSREVIGGNCRFLQGPDTNPEDVASIRDAVV 288
Query: 311 P 311
P
Sbjct: 289 P 289
>gi|311069523|ref|YP_003974446.1| blue light GTP-binding receptor [Bacillus atrophaeus 1942]
gi|419819819|ref|ZP_14343437.1| blue light GTP-binding receptor [Bacillus atrophaeus C89]
gi|310870040|gb|ADP33515.1| blue light GTP-binding receptor [Bacillus atrophaeus 1942]
gi|388475938|gb|EIM12643.1| blue light GTP-binding receptor [Bacillus atrophaeus C89]
Length = 263
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 74/119 (62%), Gaps = 1/119 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +ALD +TDP++ +PIV+ + GF++++G+S EI+G+N R QG +T+ + +
Sbjct: 16 IKKALDHARVGVVMTDPALEDNPIVYVNNGFVQLTGYSPDEILGKNCRFLQGNQTDAQEV 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
+IR + ++PI V L NYKKDGT FW + ++ +++ + T+FV Q I +K
Sbjct: 76 AKIRTGLTNKQPITVQLQNYKKDGTMFWNELNIDPIYIEQEDK-TYFVGFQKDITQQKE 133
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 36/53 (67%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+L + V+ DP L D P+VY ++ F++LTGY +E++G+NCRFL G TD
Sbjct: 19 ALDHARVGVVMTDPALEDNPIVYVNNGFVQLTGYSPDEILGKNCRFLQGNQTD 71
>gi|397627045|gb|EJK68328.1| hypothetical protein THAOC_10501 [Thalassiosira oceanica]
Length = 317
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 67/101 (66%), Gaps = 1/101 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
SF ITDPS +PIVFAS GF K++G+S E++GRN R QGP T+R+ +++I +A+ E
Sbjct: 191 SFCITDPSQIDNPIVFASDGFYKLTGYSEHEVLGRNCRFLQGPHTDRKEVVKITQALMNE 250
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
+ ++L NYKKDGTPF F ++ + D +F+ +Q
Sbjct: 251 DELTIHLTNYKKDGTPFRNEFYLANLRSP-DKSIAYFIGLQ 290
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 39/57 (68%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
SF + DP D P+V+ASD F KLTGY +EV+G+NCRFL G TD + +++ A+
Sbjct: 191 SFCITDPSQIDNPIVFASDGFYKLTGYSEHEVLGRNCRFLQGPHTDRKEVVKITQAL 247
>gi|448633793|ref|ZP_21674292.1| HTR-like protein [Haloarcula vallismortis ATCC 29715]
gi|445750484|gb|EMA01922.1| HTR-like protein [Haloarcula vallismortis ATCC 29715]
Length = 748
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 98/200 (49%), Gaps = 9/200 (4%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ A+DE P TIT P PI +A+R FL+++G++ + + GRN R QG T +
Sbjct: 257 IKRAMDEAPIGITITGPEQEDTPITYANRRFLELTGYTESAVRGRNCRFLQGEETESEPV 316
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
+R AI + P+ V L NY+KDGT FW ++ V +DG ++V Q + RK
Sbjct: 317 DAMRAAIETDEPVSVELRNYRKDGTMFWNQVTIAPVR-DDDGTVVNYVGFQQDVTERKEH 375
Query: 140 RNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIEDSCEASDL 199
+ + SE +++++ R EV + VL L+++ L ED L
Sbjct: 376 EHRLKALSE-----SVQDLLRADTREEVAEIGVETARTVLGLEANTIHLYNEDE---RTL 427
Query: 200 EKRKAATAIDNILSVLTHYS 219
E A+ AI ++ L ++
Sbjct: 428 EPAAASDAIYELIDDLPTFT 447
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 7/70 (10%)
Query: 247 LGRIKQSF-------VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
L RIK++ + P D P+ YA+ FL+LTGY + V G+NCRFL G +T++
Sbjct: 254 LTRIKRAMDEAPIGITITGPEQEDTPITYANRRFLELTGYTESAVRGRNCRFLQGEETES 313
Query: 300 TVLYQVSIAI 309
+ + AI
Sbjct: 314 EPVDAMRAAI 323
>gi|381170919|ref|ZP_09880071.1| Histidine kinase [Xanthomonas citri pv. mangiferaeindicae LMG 941]
gi|380688642|emb|CCG36558.1| Histidine kinase [Xanthomonas citri pv. mangiferaeindicae LMG 941]
Length = 502
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 68/112 (60%), Gaps = 1/112 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
T+TDP + +PIVFA+R FL+M+G++ E+IG N R QGP T+ +I ++RE+I R
Sbjct: 3 MTVTDPHLPDNPIVFANRAFLEMTGYAADEVIGNNCRFLQGPETDPASISDVRESIESRR 62
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S VF + G +F Q+ + R+ ++
Sbjct: 63 EFATEVLNYRKDGSSFWNALFISPVF-DDKGNLVYFFGSQLDVSRRRDAEDA 113
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 39/56 (69%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ DPHLPD P+V+A+ AFL++TGY +EV+G NCRFL G +TD + V +I
Sbjct: 3 MTVTDPHLPDNPIVFANRAFLEMTGYAADEVIGNNCRFLQGPETDPASISDVRESI 58
>gi|448466718|ref|ZP_21599223.1| light- and oxygen-sensing histidine kinase [Halorubrum kocurii JCM
14978]
gi|445813578|gb|EMA63555.1| light- and oxygen-sensing histidine kinase [Halorubrum kocurii JCM
14978]
Length = 913
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 68/115 (59%), Gaps = 1/115 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
ALDE S ITDP+ G+P+V+ + F++++G+ R+E +GRN R QGP ++ T I
Sbjct: 204 ALDEAGTSIQITDPTQPGNPLVYVNEEFVQLTGYERSEALGRNPRFLQGPGSDSETTKRI 263
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
R AI ERPI L NY +G P+W ++ V +G T+++ VQ I ++
Sbjct: 264 RTAIETERPITTKLRNYTAEGEPYWAKLSVTPVR-DANGIVTNYIGVQHDITEQR 317
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 39/64 (60%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
+L S + DP P P+VY ++ F++LTGY+R+E +G+N RFL G +D+ ++
Sbjct: 204 ALDEAGTSIQITDPTQPGNPLVYVNEEFVQLTGYERSEALGRNPRFLQGPGSDSETTKRI 263
Query: 306 SIAI 309
AI
Sbjct: 264 RTAI 267
>gi|422645017|ref|ZP_16708154.1| histidine kinase [Pseudomonas syringae pv. maculicola str. ES4326]
gi|330958568|gb|EGH58828.1| histidine kinase [Pseudomonas syringae pv. maculicola str. ES4326]
Length = 534
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PI+F++R FL+M+G+S EIIG N R QGP T+ + +R+AIRE I
Sbjct: 37 VTDPNRPDNPIIFSNRAFLEMTGYSSDEIIGTNCRFLQGPETDPSVVQSLRDAIRERTDI 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+LNY+KDG+ FW +S V+ + G +F A Q+ I RK
Sbjct: 97 SAEILNYRKDGSSFWNALFISPVY-NDAGSLIYFFASQLDISRRK 140
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 45/67 (67%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP+ PD P+++++ AFL++TGY +E++G NCRFL G +TD +V+
Sbjct: 24 FFAAVETTRMPMIVTDPNRPDNPIIFSNRAFLEMTGYSSDEIIGTNCRFLQGPETDPSVV 83
Query: 303 YQVSIAI 309
+ AI
Sbjct: 84 QSLRDAI 90
>gi|302846732|ref|XP_002954902.1| hypothetical protein VOLCADRAFT_65257 [Volvox carteri f.
nagariensis]
gi|218218151|gb|ACK76426.1| smallest phototropin-like protein [synthetic construct]
gi|300259877|gb|EFJ44101.1| hypothetical protein VOLCADRAFT_65257 [Volvox carteri f.
nagariensis]
Length = 133
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 68/110 (61%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
+D L + TI D S+ P+++A+ GF++ +G+S +IG+N R QG T+ + + E++
Sbjct: 1 MDVLQEGITIADCSMPDMPLIYANAGFVRTTGYSVEYVIGKNCRFLQGEGTDGQPVQELK 60
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
EAI++ R V LLNYKK+G PF ++ ++ GR TH+V VQ I
Sbjct: 61 EAIKQGRACVVQLLNYKKNGDPFVNYLSLTPIYDTATGRLTHYVGVQSDI 110
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 38/60 (63%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+++ + D +PDMP++YA+ F++ TGY V+G+NCRFL G TD + ++ AI
Sbjct: 4 LQEGITIADCSMPDMPLIYANAGFVRTTGYSVEYVIGKNCRFLQGEGTDGQPVQELKEAI 63
>gi|222422849|dbj|BAH19411.1| AT3G45780 [Arabidopsis thaliana]
Length = 826
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 68/109 (62%), Gaps = 1/109 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+ T+ +I
Sbjct: 469 TLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDLTTVKKI 528
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
R AI + + V L+NY K G FW +F + + ++ G +F+ VQ+
Sbjct: 529 RNAIDNQTEVTVQLINYTKSGKKFWNIFHLQPMRDQK-GEVQYFIGVQL 576
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 103/204 (50%), Gaps = 22/204 (10%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL +F ++D + +PI++AS GF M+G++ E++GRN R QG T+ +
Sbjct: 188 LKDALSTFQQTFVVSDATKPDYPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDADEL 247
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI------ 133
+IRE + +LNYKKDGT FW L ++ + E G+ F+ +QV +
Sbjct: 248 AKIRETLAAGNNYCGRILNYKKDGTSFWNLLTIAPI-KDESGKVLKFIGMQVEVSKHTEG 306
Query: 134 VSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDL----DRVLALDSDDTGLE 189
K +R +G+ S I + + ++++ ++S+ +L R AL S+ T L
Sbjct: 307 AKEKALRPNGLPES---------LIRYDARQKDMATNSVTELVEAVKRPRAL-SESTNLH 356
Query: 190 -IEDSCEASDLEKRKAATAIDNIL 212
E+ +L K+ A +N++
Sbjct: 357 PFMTKSESDELPKKPARRMSENVV 380
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 51/67 (76%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD T +
Sbjct: 466 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDLTTV 525
Query: 303 YQVSIAI 309
++ AI
Sbjct: 526 KKIRNAI 532
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 226 VCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVV 285
V G R +P +S L +L +Q+FV+ D PD P++YAS F +TGY EVV
Sbjct: 174 VPGGRSGIP---RVSEDLKDALSTFQQTFVVSDATKPDYPIMYASAGFFNMTGYTSKEVV 230
Query: 286 GQNCRFLNGVDTDTTVLYQV 305
G+NCRFL G TD L ++
Sbjct: 231 GRNCRFLQGSGTDADELAKI 250
>gi|342888059|gb|EGU87476.1| hypothetical protein FOXB_02061 [Fusarium oxysporum Fo5176]
Length = 670
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 72/113 (63%), Gaps = 3/113 (2%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L SF ++DPS SG+PIVFAS F +++G+SR+E++ N R QGP+T+R I ++R AI
Sbjct: 290 LKGSFCLSDPSRSGNPIVFASDEFEELTGYSRSEVLAHNCRFLQGPQTDRDGIAKMRSAI 349
Query: 87 -REERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
R E E+ LLN++KDGTPFW L + + G+ F+ Q+ + S H
Sbjct: 350 WRNEECTEL-LLNFRKDGTPFWNLLFLCPLLDTA-GKTKFFMGAQIDVSSSLH 400
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 38/60 (63%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+K SF L DP P+V+ASD F +LTGY R+EV+ NCRFL G TD + ++ AI
Sbjct: 290 LKGSFCLSDPSRSGNPIVFASDEFEELTGYSRSEVLAHNCRFLQGPQTDRDGIAKMRSAI 349
>gi|448460091|ref|ZP_21597011.1| HTR-like protein [Halorubrum lipolyticum DSM 21995]
gi|445807809|gb|EMA57890.1| HTR-like protein [Halorubrum lipolyticum DSM 21995]
Length = 620
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 68/116 (58%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
ALDE P TITDP +S +P+V+ + F++++G+ R + +G N R QG T+ + +
Sbjct: 263 ALDEAPVGITITDPDLSDNPMVYVNDRFVEVTGYDREDAVGVNCRFLQGEDTDPEPVARL 322
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
REAI E P V LLNY+KDGTPFW ++ + DG + +V Q I + K
Sbjct: 323 REAIDAEEPESVELLNYRKDGTPFWNRVSVAPIRAG-DGSVSEWVGFQEDITAFKE 377
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 39/64 (60%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
+L + DP L D PMVY +D F+++TGYDR + VG NCRFL G DTD + ++
Sbjct: 263 ALDEAPVGITITDPDLSDNPMVYVNDRFVEVTGYDREDAVGVNCRFLQGEDTDPEPVARL 322
Query: 306 SIAI 309
AI
Sbjct: 323 REAI 326
>gi|448667509|ref|ZP_21686009.1| HTR-like protein [Haloarcula amylolytica JCM 13557]
gi|445770077|gb|EMA21145.1| HTR-like protein [Haloarcula amylolytica JCM 13557]
Length = 727
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 69/115 (60%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P ITDP + +P+++A+ + ++G+S E++G+N RM QG T+ ++ +
Sbjct: 276 AIDEAPVGVVITDPGQTDNPLIYANDHYRDLTGYSLPELLGKNCRMLQGENTDPESVATM 335
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
R+AI E + V L NY+KDGT FW +++ V +DG ++V Q I RK
Sbjct: 336 RDAIDAEERVTVELRNYRKDGTEFWNRVRIAPVRDDDDGTVVNYVGFQQDITERK 390
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 10/81 (12%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLY----------Q 304
V+ DP D P++YA+D + LTGY E++G+NCR L G +TD + +
Sbjct: 285 VITDPGQTDNPLIYANDHYRDLTGYSLPELLGKNCRMLQGENTDPESVATMRDAIDAEER 344
Query: 305 VSIAISPYPKKKSIYMEYVRV 325
V++ + Y K + + VR+
Sbjct: 345 VTVELRNYRKDGTEFWNRVRI 365
>gi|21243288|ref|NP_642870.1| histidine kinase [Xanthomonas axonopodis pv. citri str. 306]
gi|21108826|gb|AAM37406.1| sensor histidine kinase [Xanthomonas axonopodis pv. citri str. 306]
Length = 540
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 68/112 (60%), Gaps = 1/112 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
T+TDP + +PIVFA+R FL+M+G++ E+IG N R QGP T+ +I ++RE+I R
Sbjct: 41 MTVTDPHLPDNPIVFANRAFLEMTGYAADEVIGNNCRFLQGPETDPASISDVRESIESRR 100
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S VF + G +F Q+ + R+ ++
Sbjct: 101 EFATEVLNYRKDGSSFWNALFISPVF-DDKGNLVYFFGSQLDVSRRRDAEDA 151
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 47/78 (60%)
Query: 232 SLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRF 291
SLP S + ++ + + DPHLPD P+V+A+ AFL++TGY +EV+G NCRF
Sbjct: 19 SLPVEKHRSDIFFAAVETTRMPMTVTDPHLPDNPIVFANRAFLEMTGYAADEVIGNNCRF 78
Query: 292 LNGVDTDTTVLYQVSIAI 309
L G +TD + V +I
Sbjct: 79 LQGPETDPASISDVRESI 96
>gi|429191076|ref|YP_007176754.1| PAS domain-containing protein [Natronobacterium gregoryi SP2]
gi|448327353|ref|ZP_21516683.1| bacterio-opsin activator [Natronobacterium gregoryi SP2]
gi|429135294|gb|AFZ72305.1| PAS domain S-box [Natronobacterium gregoryi SP2]
gi|445608586|gb|ELY62420.1| bacterio-opsin activator [Natronobacterium gregoryi SP2]
Length = 616
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 71/116 (61%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++E P TI+DP +P+V+ + + +++G+S +++GRN R+ QGP ++ TI E+
Sbjct: 120 AINEAPVGITISDPDREDNPLVYINDAYREITGYSYDDVVGRNCRLLQGPDSDEETIAEM 179
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
A+ E+ P+ V + NY+KDGT FW ++ V E G T++V Q I +RK
Sbjct: 180 AAAVDEDYPVTVEIKNYRKDGTEFWNEVTIAPVRNDE-GEVTNYVGFQNDITARKE 234
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISP-Y 312
+ DP D P+VY +DA+ ++TGY ++VVG+NCR L G D+D + +++ A+ Y
Sbjct: 128 ITISDPDREDNPLVYINDAYREITGYSYDDVVGRNCRLLQGPDSDEETIAEMAAAVDEDY 187
Query: 313 P 313
P
Sbjct: 188 P 188
>gi|418517131|ref|ZP_13083298.1| histidine kinase [Xanthomonas axonopodis pv. malvacearum str.
GSPB1386]
gi|418520507|ref|ZP_13086556.1| histidine kinase [Xanthomonas axonopodis pv. malvacearum str.
GSPB2388]
gi|410703888|gb|EKQ62376.1| histidine kinase [Xanthomonas axonopodis pv. malvacearum str.
GSPB2388]
gi|410706188|gb|EKQ64651.1| histidine kinase [Xanthomonas axonopodis pv. malvacearum str.
GSPB1386]
Length = 540
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 68/112 (60%), Gaps = 1/112 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
T+TDP + +PIVFA+R FL+M+G++ E+IG N R QGP T+ +I ++RE+I R
Sbjct: 41 MTVTDPHLPDNPIVFANRAFLEMTGYAADEVIGNNCRFLQGPETDPASISDVRESIESRR 100
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S VF + G +F Q+ + R+ ++
Sbjct: 101 EFATEVLNYRKDGSSFWNALFISPVF-DDKGNLVYFFGSQLDVSRRRDAEDA 151
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 47/78 (60%)
Query: 232 SLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRF 291
SLP S + ++ + + DPHLPD P+V+A+ AFL++TGY +EV+G NCRF
Sbjct: 19 SLPVEKHRSDIFFAAVETTRMPMTVTDPHLPDNPIVFANRAFLEMTGYAADEVIGNNCRF 78
Query: 292 LNGVDTDTTVLYQVSIAI 309
L G +TD + V +I
Sbjct: 79 LQGPETDPASISDVRESI 96
>gi|297815732|ref|XP_002875749.1| hypothetical protein ARALYDRAFT_484960 [Arabidopsis lyrata subsp.
lyrata]
gi|297321587|gb|EFH52008.1| hypothetical protein ARALYDRAFT_484960 [Arabidopsis lyrata subsp.
lyrata]
Length = 994
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 68/109 (62%), Gaps = 1/109 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+ T+ +I
Sbjct: 469 TLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDLTTVKKI 528
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
R AI + + V L+NY K G FW +F + + ++ G +F+ VQ+
Sbjct: 529 RNAIDNQTEVTVQLINYTKSGKKFWNIFHLQPMRDQK-GEVQYFIGVQL 576
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 99/203 (48%), Gaps = 20/203 (9%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL +F ++D + +PI++AS GF M+G++ E++GRN R QG T+ +
Sbjct: 188 LKDALSTFQQTFVVSDATKPDYPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDADEL 247
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI------ 133
+IRE + LLNYKKDGT FW L ++ + E G+ F+ +QV +
Sbjct: 248 AKIRETLAAGNNYCGRLLNYKKDGTSFWNLLTIAPI-KDESGKVLKFIGMQVEVSKHTEG 306
Query: 134 VSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDL----DRVLALDSDDTGLE 189
K +R +G+ S I + + ++++ ++S+ +L R AL
Sbjct: 307 AKEKSLRPNGLPES---------LIRYDARQKDIATNSVTELVEAVKRPRALSESTNLHP 357
Query: 190 IEDSCEASDLEKRKAATAIDNIL 212
E+ +L K+ A +N++
Sbjct: 358 FMTKSESDELPKKPARRMSENVV 380
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 51/67 (76%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD T +
Sbjct: 466 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDLTTV 525
Query: 303 YQVSIAI 309
++ AI
Sbjct: 526 KKIRNAI 532
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 41/67 (61%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L +Q+FV+ D PD P++YAS F +TGY EVVG+NCRFL G TD
Sbjct: 184 VSEDLKDALSTFQQTFVVSDATKPDYPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTD 243
Query: 299 TTVLYQV 305
L ++
Sbjct: 244 ADELAKI 250
>gi|390991282|ref|ZP_10261551.1| blue-light-activated protein [Xanthomonas axonopodis pv. punicae
str. LMG 859]
gi|372554009|emb|CCF68526.1| blue-light-activated protein [Xanthomonas axonopodis pv. punicae
str. LMG 859]
Length = 540
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 68/112 (60%), Gaps = 1/112 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
T+TDP + +PIVFA+R FL+M+G++ E+IG N R QGP T+ +I ++RE+I R
Sbjct: 41 MTVTDPHLPDNPIVFANRAFLEMTGYAADEVIGNNCRFLQGPETDPASISDVRESIESRR 100
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S VF + G +F Q+ + R+ ++
Sbjct: 101 EFATEVLNYRKDGSSFWNALFISPVF-DDKGNLVYFFGSQLDVSRRRDAEDA 151
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 44/70 (62%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S + ++ + + DPHLPD P+V+A+ AFL++TGY +EV+G NCRFL G +TD
Sbjct: 27 SDIFFAAVETTRMPMTVTDPHLPDNPIVFANRAFLEMTGYAADEVIGNNCRFLQGPETDP 86
Query: 300 TVLYQVSIAI 309
+ V +I
Sbjct: 87 ASISDVRESI 96
>gi|300311768|ref|YP_003775860.1| PAS/PAC sensor hybrid histidine kinase [Herbaspirillum seropedicae
SmR1]
gi|300074553|gb|ADJ63952.1| PAS/PAC sensor hybrid histidine kinase protein [Herbaspirillum
seropedicae SmR1]
Length = 552
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 67/105 (63%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
++DP+ +PIVF + F+ M+G+S AE++G+N R QGP T+R + E+R A+ E R I
Sbjct: 58 VSDPNRPDNPIVFVNNAFINMTGYSSAEVVGKNCRFLQGPETDRSVVAEVRRAVAERREI 117
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
LLNY+K+G+ FW +S V+ ++ G +F + Q+ I R+
Sbjct: 118 ATELLNYRKNGSTFWNALFISPVYDQQ-GNLKYFFSSQLDISRRR 161
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 48/72 (66%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
I+ + ++ + ++ DP+ PD P+V+ ++AF+ +TGY EVVG+NCRFL G +TD
Sbjct: 41 INDIFFAAVEMTRMPMIVSDPNRPDNPIVFVNNAFINMTGYSSAEVVGKNCRFLQGPETD 100
Query: 299 TTVLYQVSIAIS 310
+V+ +V A++
Sbjct: 101 RSVVAEVRRAVA 112
>gi|448639826|ref|ZP_21676974.1| HTR-like protein [Haloarcula sinaiiensis ATCC 33800]
gi|445762353|gb|EMA13574.1| HTR-like protein [Haloarcula sinaiiensis ATCC 33800]
Length = 748
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 6/165 (3%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ A+DE P TIT P PI +A+R FL+++G++ +E+ GRN R QG T +
Sbjct: 257 IKRAMDEAPVGITITGPKQEDTPISYANRQFLELTGYTESEVRGRNCRFLQGEETEAEPV 316
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
+R AI + P+ V L NY+KDGT FW ++ V +DG ++V Q I RK
Sbjct: 317 DAMRAAIDADEPVSVELRNYRKDGTMFWSQVSIAPVR-DDDGTVVNYVGFQQDITERKEH 375
Query: 140 RNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSD 184
+ SE +++++ R EV + VL L+++
Sbjct: 376 ERRLKALSE-----SVQDLLQADTREEVAEIGVETARTVLGLEAN 415
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 7/70 (10%)
Query: 247 LGRIKQSF-------VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
L RIK++ + P D P+ YA+ FL+LTGY +EV G+NCRFL G +T+
Sbjct: 254 LSRIKRAMDEAPVGITITGPKQEDTPISYANRQFLELTGYTESEVRGRNCRFLQGEETEA 313
Query: 300 TVLYQVSIAI 309
+ + AI
Sbjct: 314 EPVDAMRAAI 323
>gi|428201366|ref|YP_007079955.1| methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
[Pleurocapsa sp. PCC 7327]
gi|427978798|gb|AFY76398.1| methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
[Pleurocapsa sp. PCC 7327]
Length = 965
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 63/107 (58%), Gaps = 1/107 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
I D + +PIV+ + F KM+G+S +E IGRN R QG T + +IR A+ E+R
Sbjct: 578 IADATQPDYPIVYCNPAFEKMTGYSHSEAIGRNYRFLQGADTEPDAVAQIRRALHEQREC 637
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
V L NY+KDG+PFW +S V E G THF+ +Q I SR+ +
Sbjct: 638 HVVLKNYRKDGSPFWNELTISPV-QNEQGEVTHFIGLQTDITSRRQI 683
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ D PD P+VY + AF K+TGY +E +G+N RFL G DT+ + Q+ A+
Sbjct: 576 LCIADATQPDYPIVYCNPAFEKMTGYSHSEAIGRNYRFLQGADTEPDAVAQIRRAL 631
>gi|408387827|gb|EKJ67533.1| hypothetical protein FPSE_12294 [Fusarium pseudograminearum CS3096]
Length = 656
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L SF ++DPS SG+PIVFAS F +++G+SR E++ N R QGP+T+R I +R AI
Sbjct: 285 LKGSFCLSDPSRSGNPIVFASDEFEELTGYSRTEVLAHNCRFLQGPQTDRDRIANMRSAI 344
Query: 87 REERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
LLN++KDGTPFW L + + K G+ F+ Q+ + S H
Sbjct: 345 WRNDECTELLLNFRKDGTPFWNLLFLCPLLDKT-GKTKFFMGAQIDVSSSIH 395
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 36/60 (60%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+K SF L DP P+V+ASD F +LTGY R EV+ NCRFL G TD + + AI
Sbjct: 285 LKGSFCLSDPSRSGNPIVFASDEFEELTGYSRTEVLAHNCRFLQGPQTDRDRIANMRSAI 344
>gi|224000393|ref|XP_002289869.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220975077|gb|EED93406.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 103
Score = 93.6 bits (231), Expect = 1e-16, Method: Composition-based stats.
Identities = 42/103 (40%), Positives = 66/103 (64%), Gaps = 1/103 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
F +TDPS+ +PIV+A++GFL ++G++ +++GRN R QGP T+ + + +IR AI E
Sbjct: 1 FVVTDPSLPDNPIVYATQGFLNLTGYTLDQVLGRNCRFLQGPETDPKAVEKIRNAIEEGS 60
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+ V LLNY+ DGT FW F ++ G T++V VQ +
Sbjct: 61 DMSVCLLNYRVDGTTFWNQFFIA-ALRDAGGNITNYVGVQCKV 102
Score = 68.2 bits (165), Expect = 5e-09, Method: Composition-based stats.
Identities = 29/56 (51%), Positives = 40/56 (71%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
FV+ DP LPD P+VYA+ FL LTGY ++V+G+NCRFL G +TD + ++ AI
Sbjct: 1 FVVTDPSLPDNPIVYATQGFLNLTGYTLDQVLGRNCRFLQGPETDPKAVEKIRNAI 56
>gi|409406269|ref|ZP_11254731.1| PAS/PAC sensor hybrid histidine kinase [Herbaspirillum sp. GW103]
gi|386434818|gb|EIJ47643.1| PAS/PAC sensor hybrid histidine kinase [Herbaspirillum sp. GW103]
Length = 546
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 68/105 (64%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
++DP+ +PI+F + F+ M+G+SRAE++G+N R QGP T+R + ++R+A+ E R +
Sbjct: 52 VSDPNKPDNPIIFVNNAFMNMTGYSRAEVVGKNCRFLQGPETDRSVVAQVRQAVAERREM 111
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
LLNY+K+G+ FW +S V+ + G +F + Q+ I R+
Sbjct: 112 ATELLNYRKNGSTFWNALFISPVYDQR-GELKYFFSSQLDISRRR 155
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 51/80 (63%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP+ PD P+++ ++AF+ +TGY R EVVG+NCRFL G +TD +V+
Sbjct: 39 FFAAVEMTRMPMIVSDPNKPDNPIIFVNNAFMNMTGYSRAEVVGKNCRFLQGPETDRSVV 98
Query: 303 YQVSIAISPYPKKKSIYMEY 322
QV A++ + + + Y
Sbjct: 99 AQVRQAVAERREMATELLNY 118
>gi|359779999|ref|ZP_09283226.1| histidine kinase [Pseudomonas psychrotolerans L19]
gi|359372615|gb|EHK73179.1| histidine kinase [Pseudomonas psychrotolerans L19]
Length = 538
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 68/110 (61%), Gaps = 1/110 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP +PI+FA+ FL+ +G++ E++GRN R QGP T + I EIR AIRE+R
Sbjct: 43 VTDPHQPDNPIIFANESFLRTTGYALDEVLGRNCRFLQGPDTRQEHIAEIRNAIREQRDC 102
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
++ LLNY+KDG+ FW +S V G+ +F A Q+ + R+ ++
Sbjct: 103 DIELLNYRKDGSTFWNALFISPVLDPA-GQLRYFFASQLDVSRRRDAEDA 151
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 45/67 (67%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + + ++ DPH PD P+++A+++FL+ TGY +EV+G+NCRFL G DT +
Sbjct: 30 FFAAVKKTRMPMIVTDPHQPDNPIIFANESFLRTTGYALDEVLGRNCRFLQGPDTRQEHI 89
Query: 303 YQVSIAI 309
++ AI
Sbjct: 90 AEIRNAI 96
>gi|300711248|ref|YP_003737062.1| bacterio-opsin activator [Halalkalicoccus jeotgali B3]
gi|448296650|ref|ZP_21486704.1| bacterio-opsin activator [Halalkalicoccus jeotgali B3]
gi|299124931|gb|ADJ15270.1| bacterio-opsin activator [Halalkalicoccus jeotgali B3]
gi|445580943|gb|ELY35309.1| bacterio-opsin activator [Halalkalicoccus jeotgali B3]
Length = 531
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 64/118 (54%), Gaps = 2/118 (1%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ A+DE P TI D + P+++ + F +++G+ E +G N R QG RT +
Sbjct: 7 IERAIDEAPIGITIADATREDDPLIYINDAFERLTGYPPEETLGTNCRFLQGERTAAEPV 66
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+REAI E P V L NY+KDGT FW K+ + EDG THFV Q + +RK
Sbjct: 67 ATMREAIEAEEPTSVELRNYRKDGTEFWN--KVDIAPIHEDGDVTHFVGFQTDVTARK 122
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG 294
+ D D P++Y +DAF +LTGY E +G NCRFL G
Sbjct: 18 ITIADATREDDPLIYINDAFERLTGYPPEETLGTNCRFLQG 58
>gi|15231245|ref|NP_190164.1| non-specific serine/threonine protein kinase [Arabidopsis thaliana]
gi|79314333|ref|NP_001030814.1| non-specific serine/threonine protein kinase [Arabidopsis thaliana]
gi|25090817|sp|O48963.1|PHOT1_ARATH RecName: Full=Phototropin-1; AltName: Full=Non-phototropic
hypocotyl protein 1; AltName: Full=Root phototropism
protein 1
gi|13430612|gb|AAK25928.1|AF360218_1 putative nonphototropic hypocotyl 1 protein [Arabidopsis thaliana]
gi|2832241|gb|AAC01753.1| nonphototropic hypocotyl 1 [Arabidopsis thaliana]
gi|7019644|emb|CAB75791.1| nonphototropic hypocotyl 1 [Arabidopsis thaliana]
gi|14532876|gb|AAK64120.1| putative nonphototropic hypocotyl 1 protein [Arabidopsis thaliana]
gi|332644551|gb|AEE78072.1| non-specific serine/threonine protein kinase [Arabidopsis thaliana]
gi|332644552|gb|AEE78073.1| non-specific serine/threonine protein kinase [Arabidopsis thaliana]
Length = 996
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 68/109 (62%), Gaps = 1/109 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+ T+ +I
Sbjct: 469 TLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDLTTVKKI 528
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
R AI + + V L+NY K G FW +F + + ++ G +F+ VQ+
Sbjct: 529 RNAIDNQTEVTVQLINYTKSGKKFWNIFHLQPMRDQK-GEVQYFIGVQL 576
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 99/203 (48%), Gaps = 20/203 (9%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL +F ++D + +PI++AS GF M+G++ E++GRN R QG T+ +
Sbjct: 188 LKDALSTFQQTFVVSDATKPDYPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDADEL 247
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI------ 133
+IRE + +LNYKKDGT FW L ++ + E G+ F+ +QV +
Sbjct: 248 AKIRETLAAGNNYCGRILNYKKDGTSFWNLLTIAPI-KDESGKVLKFIGMQVEVSKHTEG 306
Query: 134 VSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDL----DRVLALDSDDTGLE 189
K +R +G+ S I + + ++++ ++S+ +L R AL
Sbjct: 307 AKEKALRPNGLPES---------LIRYDARQKDMATNSVTELVEAVKRPRALSESTNLHP 357
Query: 190 IEDSCEASDLEKRKAATAIDNIL 212
E+ +L K+ A +N++
Sbjct: 358 FMTKSESDELPKKPARRMSENVV 380
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 51/67 (76%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD T +
Sbjct: 466 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDLTTV 525
Query: 303 YQVSIAI 309
++ AI
Sbjct: 526 KKIRNAI 532
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 226 VCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVV 285
V G R +P +S L +L +Q+FV+ D PD P++YAS F +TGY EVV
Sbjct: 174 VPGGRSGIPR---VSEDLKDALSTFQQTFVVSDATKPDYPIMYASAGFFNMTGYTSKEVV 230
Query: 286 GQNCRFLNGVDTDTTVLYQV 305
G+NCRFL G TD L ++
Sbjct: 231 GRNCRFLQGSGTDADELAKI 250
>gi|404403342|ref|ZP_10994926.1| histidine kinase [Pseudomonas fuscovaginae UPB0736]
Length = 519
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 77/126 (61%), Gaps = 3/126 (2%)
Query: 13 NNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGP 72
+NR L+ A++ + +TDP+ +PI+FA++ FL + GF R E+IGRN R QGP
Sbjct: 12 SNRKDLFF-AAMETSHSAMIVTDPAQPDNPIIFANQAFLSLVGFERDEVIGRNCRFLQGP 70
Query: 73 RTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVP 132
T++R + +++ A+ + V +LNY+KDG+ FW + +F E G+ +F A Q+
Sbjct: 71 ETDKRVLQQVQLAVLHHHEVCVEVLNYRKDGSAFWNELFIFPLF-NERGQLVYFFASQLD 129
Query: 133 IVSRKH 138
VSR+H
Sbjct: 130 -VSRRH 134
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 230 RCSLPGMGFISSSLYISLGRIKQSFVLI-DPHLPDMPMVYASDAFLKLTGYDRNEVVGQN 288
R L G+ L+ + S +++ DP PD P+++A+ AFL L G++R+EV+G+N
Sbjct: 4 RIDLAGLSSNRKDLFFAAMETSHSAMIVTDPAQPDNPIIFANQAFLSLVGFERDEVIGRN 63
Query: 289 CRFLNGVDTDTTVLYQVSIAI 309
CRFL G +TD VL QV +A+
Sbjct: 64 CRFLQGPETDKRVLQQVQLAV 84
>gi|149286422|gb|ABR23226.1| hisactophilin C49S mutant/hisactophilin/phototropin PHY3 fusion
protein [Expression vector
pNCO-HISACT-(C49S)-ASLOV1-syn]
Length = 245
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL +F ++D S GHPI++AS GF M+G++ E++GRN R QG T+ I +I
Sbjct: 131 ALSAFQQTFVVSDASRPGHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDPAEIAKI 190
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
R+A+ +LNYKKDGT FW L ++ + E+GR F+ +QV +
Sbjct: 191 RQALANGSNYCGRVLNYKKDGTAFWNLLTIAPI-KDEEGRVLKFIGMQVEV 240
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 40/65 (61%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
+L +Q+FV+ D P P++YAS F +TGY EVVG+NCRFL G TD + ++
Sbjct: 131 ALSAFQQTFVVSDASRPGHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDPAEIAKI 190
Query: 306 SIAIS 310
A++
Sbjct: 191 RQALA 195
>gi|222106570|ref|YP_002547361.1| sensory box histidine kinase [Agrobacterium vitis S4]
gi|221737749|gb|ACM38645.1| sensory box histidine kinase [Agrobacterium vitis S4]
Length = 411
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 79/130 (60%), Gaps = 4/130 (3%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
ITDP + +PI+FA+ F +++G++ ++IG+N R QGP ++ + +++IR+AI ER +
Sbjct: 83 ITDPRQADNPIIFANNAFCELTGYASDDLIGKNCRFLQGPDSDPKAVLQIRKAIEAERDV 142
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV---PIVSRKHMRNSGMSYSED 149
VN+LNY+KDGT FW +S V + G +F A Q+ + S++ S S +E
Sbjct: 143 SVNILNYRKDGTTFWNALFISPVRDIQ-GEVIYFFASQLDFTDVKSKEVQLASAKSQAEA 201
Query: 150 GGGSRLREIV 159
R +++V
Sbjct: 202 AVAQRTQDLV 211
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 40/59 (67%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ ++ DP D P+++A++AF +LTGY ++++G+NCRFL G D+D + Q+ AI
Sbjct: 78 RMPMIITDPRQADNPIIFANNAFCELTGYASDDLIGKNCRFLQGPDSDPKAVLQIRKAI 136
>gi|334117232|ref|ZP_08491324.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Microcoleus vaginatus FGP-2]
gi|333462052|gb|EGK90657.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Microcoleus vaginatus FGP-2]
Length = 1024
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 72/122 (59%), Gaps = 4/122 (3%)
Query: 17 TLWVHE-ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTN 75
LW+ + AL I D + PI++ + F +M+G+ +EI+GRN R QGP T+
Sbjct: 49 ALWLCDRALAATSSGIVIADANAPDCPIIYCNPAFERMTGYCASEILGRNCRFLQGPDTD 108
Query: 76 RRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPIV 134
R T+ IR+A+R+ R I+ + NY+KDG+PFW K+SL ++D THFV +Q +
Sbjct: 109 RTTVANIRDALRQGREIQTTIKNYRKDGSPFWS--KLSLSPVRDDSANLTHFVGIQSDLS 166
Query: 135 SR 136
R
Sbjct: 167 ER 168
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 240 SSSLYI---SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296
S +L++ +L V+ D + PD P++Y + AF ++TGY +E++G+NCRFL G D
Sbjct: 47 SEALWLCDRALAATSSGIVIADANAPDCPIIYCNPAFERMTGYCASEILGRNCRFLQGPD 106
Query: 297 TDTTVLYQVSIAI 309
TD T + + A+
Sbjct: 107 TDRTTVANIRDAL 119
>gi|389572124|ref|ZP_10162211.1| ytvA [Bacillus sp. M 2-6]
gi|388428148|gb|EIL85946.1| ytvA [Bacillus sp. M 2-6]
Length = 267
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 68/119 (57%), Gaps = 1/119 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +ALD ITDPS+ +PIV+ + GF +M+G+ EI+GRN R QG TN+ +
Sbjct: 16 IKKALDHARIGVVITDPSLEDNPIVYVNHGFTQMTGYKPDEILGRNCRFLQGKDTNQEQL 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
IR I+ + PI L NYKKDGT FW + ++ ++D + T F+ Q I +K
Sbjct: 76 DLIRHGIQNKTPITTQLKNYKKDGTFFWNELNIDPLYIEQDDK-TFFIGFQKDITKQKE 133
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 35/53 (66%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+L + V+ DP L D P+VY + F ++TGY +E++G+NCRFL G DT+
Sbjct: 19 ALDHARIGVVITDPSLEDNPIVYVNHGFTQMTGYKPDEILGRNCRFLQGKDTN 71
>gi|296283304|ref|ZP_06861302.1| hypothetical protein CbatJ_06766 [Citromicrobium bathyomarinum
JL354]
Length = 335
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 72/122 (59%), Gaps = 1/122 (0%)
Query: 9 EQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM 68
E F++ + +A+ + + ++DP++ PIVFA+R F +++G+ EI+GRN R
Sbjct: 7 EDRFSDTSGVLFEQAMAQTRMAVCLSDPNLPDQPIVFANRAFRRLTGYDEDEILGRNCRF 66
Query: 69 FQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVA 128
QGP+T+R + +REAI E + V LLNY+KDGT FW + ++ + G+ +F
Sbjct: 67 LQGPKTDRAEVARVREAIENEDVVVVELLNYRKDGTEFWNALHLGPIYDAQ-GKLLYFFG 125
Query: 129 VQ 130
Q
Sbjct: 126 SQ 127
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 45/64 (70%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
++ + + + L DP+LPD P+V+A+ AF +LTGYD +E++G+NCRFL G TD + +V
Sbjct: 21 AMAQTRMAVCLSDPNLPDQPIVFANRAFRRLTGYDEDEILGRNCRFLQGPKTDRAEVARV 80
Query: 306 SIAI 309
AI
Sbjct: 81 REAI 84
>gi|336253112|ref|YP_004596219.1| PAS/PAC sensor protein [Halopiger xanaduensis SH-6]
gi|335337101|gb|AEH36340.1| putative PAS/PAC sensor protein [Halopiger xanaduensis SH-6]
Length = 658
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 70/120 (58%), Gaps = 1/120 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL+E P TI+DP +P+V+ + + +++G+S E++GRN R QG +N I E+
Sbjct: 138 ALEEAPVGITISDPDREDNPLVYVNEAYQEITGYSYDEVVGRNCRFLQGGDSNPDAIAEM 197
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
AI E+RP+ V L NY+KDGT FW ++ V + G T++V Q + +RK +
Sbjct: 198 AAAIDEDRPVTVELENYRKDGTEFWNEVTIAPVR-NDAGEVTNYVGFQNDVTARKEAERA 256
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 38/56 (67%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ DP D P+VY ++A+ ++TGY +EVVG+NCRFL G D++ + +++ AI
Sbjct: 146 ITISDPDREDNPLVYVNEAYQEITGYSYDEVVGRNCRFLQGGDSNPDAIAEMAAAI 201
>gi|285018414|ref|YP_003376125.1| sensory box histidine kinase/response regulator protein
[Xanthomonas albilineans GPE PC73]
gi|283473632|emb|CBA16135.1| putative sensory box histidine kinase/response regulator protein
[Xanthomonas albilineans GPE PC73]
Length = 544
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 68/110 (61%), Gaps = 1/110 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PI+F + FL+M+G+S+ E+IG N R QGP T+R T+ +R+AI +
Sbjct: 45 VTDPNQPDNPIIFVNNAFLEMTGYSKEELIGNNCRFLQGPDTDRETVRSVRDAIASHTEV 104
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
V +LNY+KDG+ FW +S V+ E G+ +F Q+ + R+ ++
Sbjct: 105 AVEILNYRKDGSSFWNALYISPVY-DECGKLVYFFGSQLDVSRRRDAEDA 153
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 46/73 (63%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S + ++ + ++ DP+ PD P+++ ++AFL++TGY + E++G NCRFL G DTD
Sbjct: 29 SDIFFAAVQTTRMPMIVTDPNQPDNPIIFVNNAFLEMTGYSKEELIGNNCRFLQGPDTDR 88
Query: 300 TVLYQVSIAISPY 312
+ V AI+ +
Sbjct: 89 ETVRSVRDAIASH 101
>gi|407978580|ref|ZP_11159410.1| hypothetical protein BA1_05237 [Bacillus sp. HYC-10]
gi|407414949|gb|EKF36570.1| hypothetical protein BA1_05237 [Bacillus sp. HYC-10]
Length = 279
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 68/118 (57%), Gaps = 1/118 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +ALD ITDPS+ +PIV+ + GF +M+G+ EI+GRN R QG T++ +
Sbjct: 16 IKKALDHARIGVVITDPSLEDNPIVYVNHGFTQMTGYKPDEILGRNCRFLQGKDTDQEQL 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
IR I+ + PI L NYKKDGT FW + ++ ++D + T FV Q I +K
Sbjct: 76 ALIRHGIQHKTPITTQLKNYKKDGTFFWNELNIDPLYIEQDDK-TFFVGFQKDITKQK 132
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 35/53 (66%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+L + V+ DP L D P+VY + F ++TGY +E++G+NCRFL G DTD
Sbjct: 19 ALDHARIGVVITDPSLEDNPIVYVNHGFTQMTGYKPDEILGRNCRFLQGKDTD 71
>gi|62320280|dbj|BAD94575.1| nonphototropic hypocotyl 1 [Arabidopsis thaliana]
Length = 731
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 68/108 (62%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+ T+ +IR
Sbjct: 470 LERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDLTTVKKIR 529
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
AI + + V L+NY K G FW +F + + ++ G +F+ VQ+
Sbjct: 530 NAIDNQTEVTVQLINYTKSGKKFWNIFHLQPMRDQK-GEVQYFIGVQL 576
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 51/67 (76%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD T +
Sbjct: 466 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDLTTV 525
Query: 303 YQVSIAI 309
++ AI
Sbjct: 526 KKIRNAI 532
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 103/204 (50%), Gaps = 22/204 (10%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL +F ++D + +PI++AS GF M+G++ E++GRN R QG T+ +
Sbjct: 188 LKDALSTFQQTFVVSDATKPDYPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDADEL 247
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI------ 133
+IRE + +LNYKKDGT FW L ++ + E G+ F+ +QV +
Sbjct: 248 AKIRETLAAGNNYCGRILNYKKDGTSFWNLLTIAPI-KDESGKVLKFIGMQVEVSKHTEG 306
Query: 134 VSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDL----DRVLALDSDDTGLE 189
K +R +G+ S I + + ++++ ++S+ +L R AL S+ T L
Sbjct: 307 AKEKALRPNGLPES---------LIRYDARQKDMATNSVTELVEAVKRPRAL-SESTNLH 356
Query: 190 -IEDSCEASDLEKRKAATAIDNIL 212
E+ +L K+ A +N++
Sbjct: 357 PFMAKSESDELPKKPARRMSENVV 380
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 226 VCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVV 285
V G R +P +S L +L +Q+FV+ D PD P++YAS F +TGY EVV
Sbjct: 174 VPGGRSGIP---RVSEDLKDALSTFQQTFVVSDATKPDYPIMYASAGFFNMTGYTSKEVV 230
Query: 286 GQNCRFLNGVDTDTTVLYQV 305
G+NCRFL G TD L ++
Sbjct: 231 GRNCRFLQGSGTDADELAKI 250
>gi|27807563|dbj|BAC55266.1| phytochrome 3 [Hypolepis punctata]
Length = 657
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + SF ITDP + +PI+FAS FL+++ +SR E++G N QG T+ T+ IR
Sbjct: 466 LERIGQSFVITDPRLPNNPIIFASDQFLELTEYSREEVLGNNCSFLQGRDTDANTVQLIR 525
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135
+A+ E+R + V LLNY + G PFW LF + E G +F+ VQ V+
Sbjct: 526 DAVAEQRDVTVQLLNYTRGGRPFWNLFHLH-AMRDEKGELQYFIGVQQETVA 576
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 68/129 (52%), Gaps = 14/129 (10%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
SF + D PI+FAS GF ++G++ E+IG N R+ QGP TN + IREA+ ++
Sbjct: 221 SFVVVDALKPDLPIIFASTGFFNLTGYTSTEVIGANCRLLQGPDTNPEDVASIREALAQD 280
Query: 90 RPIEV-NLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPIVSRKHMRNSGMSYS 147
LLNY+KDG+ FW L ++ + K+D G + VQ+ + Y+
Sbjct: 281 TGTFCRKLLNYRKDGSSFWNLLTIAPI--KDDRGSIVKLIGVQLEV----------SKYT 328
Query: 148 EDGGGSRLR 156
E +RLR
Sbjct: 329 EGSRANRLR 337
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 46/68 (67%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI QSFV+ DP LP+ P+++ASD FL+LT Y R EV+G NC FL G DTD +
Sbjct: 462 LATTLERIGQSFVITDPRLPNNPIIFASDQFLELTEYSREEVLGNNCSFLQGRDTDANTV 521
Query: 303 YQVSIAIS 310
+ A++
Sbjct: 522 QLIRDAVA 529
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
+ SFV++D PD+P+++AS F LTGY EV+G NCR L G DT+ + + A++
Sbjct: 219 QTSFVVVDALKPDLPIIFASTGFFNLTGYTSTEVIGANCRLLQGPDTNPEDVASIREALA 278
>gi|429192923|ref|YP_007178601.1| PAS domain-containing protein [Natronobacterium gregoryi SP2]
gi|448326770|ref|ZP_21516114.1| bacterio-opsin activator [Natronobacterium gregoryi SP2]
gi|429137141|gb|AFZ74152.1| PAS domain S-box [Natronobacterium gregoryi SP2]
gi|445609821|gb|ELY63607.1| bacterio-opsin activator [Natronobacterium gregoryi SP2]
Length = 662
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 69/115 (60%), Gaps = 1/115 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+D+ P +++DPS+ +P V+ + + +++GF RA I+GRN R+ QGP T+ +
Sbjct: 140 AIDDAPIGISLSDPSLPDNPTVYVNDAWEEITGFDRASILGRNPRILQGPATDPEIKSAL 199
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
EA+ E+P+ V + NY+ DGTP+W ++ V+ + D H+V Q + RK
Sbjct: 200 SEAVDAEQPVTVEIKNYRPDGTPWWNELSIAPVYDESDD-PVHYVGFQKDVTDRK 253
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 35/54 (64%)
Query: 256 LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
L DP LPD P VY +DA+ ++TG+DR ++G+N R L G TD + +S A+
Sbjct: 150 LSDPSLPDNPTVYVNDAWEEITGFDRASILGRNPRILQGPATDPEIKSALSEAV 203
>gi|393768622|ref|ZP_10357158.1| histidine kinase [Methylobacterium sp. GXF4]
gi|392725905|gb|EIZ83234.1| histidine kinase [Methylobacterium sp. GXF4]
Length = 524
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 100/200 (50%), Gaps = 18/200 (9%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP +PI+FA+R FL M+G++ E++GRN R QGP T+R T+ +IR AI E+R
Sbjct: 31 VTDPRQPDNPIIFANRAFLAMTGYTPEELVGRNCRFLQGPETDRETVDQIRTAIAEKREF 90
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSEDGGG 152
+LNY+K+G+ FW +S V+ G +F Q+ + R+ +E+ G
Sbjct: 91 ATEILNYRKNGSSFWNALFVSPVYNSA-GELVYFFGSQLDVSRRRD--------AEEALG 141
Query: 153 SRLREIVFGSCRREVCSDSLLDLDRVLA--LDSDDTGLEIEDSCEASDLEKRKAATAIDN 210
+ G + D +L +V+ +D +GLE D+ ++ + A DN
Sbjct: 142 QAQKMEALGQLTGGIAHD-FNNLLQVIVGYVDILASGLEKPDA------DRARLGRATDN 194
Query: 211 ILSVLTHYSQLTGRLVCGKR 230
I + LT +L+ R
Sbjct: 195 IRQAAERATTLTQQLLAFAR 214
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 44/71 (61%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S + ++ + ++ DP PD P+++A+ AFL +TGY E+VG+NCRFL G +TD
Sbjct: 15 SDIFFAAVETTRMPMIVTDPRQPDNPIIFANRAFLAMTGYTPEELVGRNCRFLQGPETDR 74
Query: 300 TVLYQVSIAIS 310
+ Q+ AI+
Sbjct: 75 ETVDQIRTAIA 85
>gi|237797307|ref|ZP_04585768.1| histidine kinase [Pseudomonas syringae pv. oryzae str. 1_6]
gi|331020157|gb|EGI00214.1| histidine kinase [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 534
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PI+F++R FL M+G+S +EIIG N R QGP T+R + IR AI++ I
Sbjct: 37 VTDPNRPDNPIIFSNRAFLDMTGYSASEIIGTNCRFLQGPDTDRAVVQSIRNAIQDRVDI 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+LNY+KDG+ FW +S V+ + G +F A Q+ I RK
Sbjct: 97 STEILNYRKDGSTFWNALFISPVY-NDAGDLIYFFASQLDISRRK 140
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 43/67 (64%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP+ PD P+++++ AFL +TGY +E++G NCRFL G DTD V+
Sbjct: 24 FFAAVETTRMPMIVTDPNRPDNPIIFSNRAFLDMTGYSASEIIGTNCRFLQGPDTDRAVV 83
Query: 303 YQVSIAI 309
+ AI
Sbjct: 84 QSIRNAI 90
>gi|422641750|ref|ZP_16705172.1| histidine kinase, partial [Pseudomonas syringae Cit 7]
gi|330954136|gb|EGH54396.1| histidine kinase [Pseudomonas syringae Cit 7]
Length = 266
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PI+FA+R FL+M+G++ EIIG N R QGP T+R + IR+AI E I
Sbjct: 37 VTDPNRPDNPIIFANRAFLEMTGYASEEIIGSNCRFLQGPDTDRAVVKSIRDAIDERVDI 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+LNY+KDG+ FW +S V+ + G +F A Q+ I R+
Sbjct: 97 STEILNYRKDGSTFWNALFISPVY-NDAGDLIYFFASQLDISRRR 140
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 43/67 (64%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP+ PD P+++A+ AFL++TGY E++G NCRFL G DTD V+
Sbjct: 24 FFAAVETTRMPMIVTDPNRPDNPIIFANRAFLEMTGYASEEIIGSNCRFLQGPDTDRAVV 83
Query: 303 YQVSIAI 309
+ AI
Sbjct: 84 KSIRDAI 90
>gi|440740300|ref|ZP_20919790.1| histidine kinase [Pseudomonas fluorescens BRIP34879]
gi|440377195|gb|ELQ13846.1| histidine kinase [Pseudomonas fluorescens BRIP34879]
Length = 524
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 84/137 (61%), Gaps = 3/137 (2%)
Query: 13 NNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGP 72
+NR L++ A++ + +TDP+ +PI+FA++ F+ ++GF + EIIGRN R+ QGP
Sbjct: 19 SNRKDLFL-AAMEASHSAMIVTDPAQHDNPIIFANQAFVDLTGFEQDEIIGRNCRLLQGP 77
Query: 73 RTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVP 132
T++ + + ++AI + V +LNY+KDG+ FW ++ +F E G+ +F A Q+
Sbjct: 78 ETDKCALAQAQQAIERHHEVCVEVLNYRKDGSTFWNEIFIAPLF-NEAGQLVYFFASQLD 136
Query: 133 IVSRKHMRNSGMSYSED 149
VSR+H + ++D
Sbjct: 137 -VSRRHDAEQRLRSAQD 152
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 39/57 (68%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ ++ DP D P+++A+ AF+ LTG++++E++G+NCR L G +TD L Q AI
Sbjct: 35 AMIVTDPAQHDNPIIFANQAFVDLTGFEQDEIIGRNCRLLQGPETDKCALAQAQQAI 91
>gi|440745642|ref|ZP_20924932.1| histidine kinase [Pseudomonas syringae BRIP39023]
gi|440372275|gb|ELQ09083.1| histidine kinase [Pseudomonas syringae BRIP39023]
Length = 502
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PI+FA+R FL+M+G++ EIIG N R QGP T+R + IR+AI E I
Sbjct: 5 VTDPNRPDNPIIFANRAFLEMTGYASEEIIGSNCRFLQGPETDRAVVKSIRDAIDERVDI 64
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+LNY+KDG+ FW +S V+ + G +F A Q+ I R+
Sbjct: 65 STEILNYRKDGSTFWNALFISPVY-NDAGDLIYFFASQLDISRRR 108
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 39/56 (69%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
++ DP+ PD P+++A+ AFL++TGY E++G NCRFL G +TD V+ + AI
Sbjct: 3 MIVTDPNRPDNPIIFANRAFLEMTGYASEEIIGSNCRFLQGPETDRAVVKSIRDAI 58
>gi|424072283|ref|ZP_17809704.1| sensor y box histidine kinase/response regulator [Pseudomonas
syringae pv. avellanae str. ISPaVe037]
gi|407997937|gb|EKG38366.1| sensor y box histidine kinase/response regulator [Pseudomonas
syringae pv. avellanae str. ISPaVe037]
Length = 534
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PI+FA++ FL+M+G+S EIIG N R QGP T+R + IR+AI E I
Sbjct: 37 VTDPNRPDNPIIFANQAFLEMTGYSSEEIIGSNCRFLQGPDTDRAAVQSIRDAIEERVDI 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+LNY+KDG+ FW +S V+ + G +F A Q+ I R+
Sbjct: 97 STEILNYRKDGSSFWNALFISPVY-NDAGDLIYFFASQLDISRRR 140
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 42/67 (62%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP+ PD P+++A+ AFL++TGY E++G NCRFL G DTD +
Sbjct: 24 FFAAVETTRMPMIVTDPNRPDNPIIFANQAFLEMTGYSSEEIIGSNCRFLQGPDTDRAAV 83
Query: 303 YQVSIAI 309
+ AI
Sbjct: 84 QSIRDAI 90
>gi|448441461|ref|ZP_21589124.1| HTR-like protein [Halorubrum saccharovorum DSM 1137]
gi|445688870|gb|ELZ41117.1| HTR-like protein [Halorubrum saccharovorum DSM 1137]
Length = 590
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
ALDE P TITDP + +P+V+ + F++++G+ R + +G N R QG T+ + +
Sbjct: 263 ALDEAPVGITITDPDLPDNPMVYVNDRFVEVTGYDRDDAVGVNCRFLQGKDTDEEPVSRL 322
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
REAI E P V LLNY+KDGTPFW ++ + DG + +V Q I + K
Sbjct: 323 REAIDAEEPESVELLNYRKDGTPFWNRVSVAPILDG-DGSVSEWVGFQEDITAFKE 377
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 41/64 (64%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
+L + DP LPD PMVY +D F+++TGYDR++ VG NCRFL G DTD + ++
Sbjct: 263 ALDEAPVGITITDPDLPDNPMVYVNDRFVEVTGYDRDDAVGVNCRFLQGKDTDEEPVSRL 322
Query: 306 SIAI 309
AI
Sbjct: 323 REAI 326
>gi|422294611|gb|EKU21911.1| hypothetical protein NGA_0015702 [Nannochloropsis gaditana CCMP526]
Length = 228
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 71/118 (60%), Gaps = 3/118 (2%)
Query: 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTN 75
YTL +AL +F ITDP++ +PIV+AS GFL ++G+ +I+GRN R QGP T+
Sbjct: 89 YTLV--KALQTAQQNFVITDPTLPDNPIVYASGGFLSLTGYQMDQILGRNCRFLQGPDTD 146
Query: 76 RRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+ +IR AI + V LLNY+ DG+ FW F ++ + G DG ++V VQ +
Sbjct: 147 PAAVDKIRRAIEDGTDGSVCLLNYRADGSTFWNQFFIAALRGA-DGNIVNYVGVQCKV 203
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 47/68 (69%)
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTV 301
+L +L +Q+FV+ DP LPD P+VYAS FL LTGY ++++G+NCRFL G DTD
Sbjct: 90 TLVKALQTAQQNFVITDPTLPDNPIVYASGGFLSLTGYQMDQILGRNCRFLQGPDTDPAA 149
Query: 302 LYQVSIAI 309
+ ++ AI
Sbjct: 150 VDKIRRAI 157
>gi|424067645|ref|ZP_17805101.1| sensor y box histidine kinase/response regulator [Pseudomonas
syringae pv. avellanae str. ISPaVe013]
gi|408000214|gb|EKG40576.1| sensor y box histidine kinase/response regulator [Pseudomonas
syringae pv. avellanae str. ISPaVe013]
Length = 502
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PI+FA++ FL+M+G+S EIIG N R QGP T+R + IR+AI E I
Sbjct: 5 VTDPNRPDNPIIFANQAFLEMTGYSSEEIIGSNCRFLQGPDTDRAAVQSIRDAIEERVDI 64
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+LNY+KDG+ FW +S V+ + G +F A Q+ I R+
Sbjct: 65 STEILNYRKDGSSFWNALFISPVY-NDAGDLIYFFASQLDISRRR 108
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 38/56 (67%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
++ DP+ PD P+++A+ AFL++TGY E++G NCRFL G DTD + + AI
Sbjct: 3 MIVTDPNRPDNPIIFANQAFLEMTGYSSEEIIGSNCRFLQGPDTDRAAVQSIRDAI 58
>gi|389572311|ref|ZP_10162396.1| ytvA [Bacillus sp. M 2-6]
gi|388427892|gb|EIL85692.1| ytvA [Bacillus sp. M 2-6]
Length = 262
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 70/122 (57%), Gaps = 1/122 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ EALD T+TDPS+ +P+++ ++GFL M+G+ E++G+N R QG T + +
Sbjct: 14 IKEALDYTQVGLTVTDPSLPDNPLIYVNKGFLDMTGYQETEVLGKNCRFLQGDETEQIAL 73
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMS-LVFGKEDGRATHFVAVQVPIVSRKH 138
+IR AI ++ + V L NYKK G FW ++ L + +G+ +FV +Q + K
Sbjct: 74 KQIRAAIEKKEAVTVQLKNYKKSGQMFWNELSVAPLWIDENEGKRLYFVGLQKDVTKEKE 133
Query: 139 MR 140
+
Sbjct: 134 QQ 135
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYP 313
+ DP LPD P++Y + FL +TGY EV+G+NCRFL G +T+ L Q+ AI
Sbjct: 25 LTVTDPSLPDNPLIYVNKGFLDMTGYQETEVLGKNCRFLQGDETEQIALKQIRAAIE--- 81
Query: 314 KKKSIYME 321
KK+++ ++
Sbjct: 82 KKEAVTVQ 89
>gi|448489426|ref|ZP_21607649.1| HTR-like protein [Halorubrum californiensis DSM 19288]
gi|445694798|gb|ELZ46916.1| HTR-like protein [Halorubrum californiensis DSM 19288]
Length = 594
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
ALDE P TIT+P+ +P+V+ + F++M+G+ R E IG N R QGP T ++ +
Sbjct: 263 ALDEAPVGITITNPAREDNPMVYVNDRFVEMTGYDREESIGVNCRFLQGPDTEEASVQAL 322
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
R+AI E V LLNY+KDGT FW ++ + +G TH+V Q I + K
Sbjct: 323 RDAIDAEESTSVELLNYRKDGTEFWNRVSIAPI-SDANGTVTHWVGFQEDITAFKE 377
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
+L + +P D PMVY +D F+++TGYDR E +G NCRFL G DT+ + +
Sbjct: 263 ALDEAPVGITITNPAREDNPMVYVNDRFVEMTGYDREESIGVNCRFLQGPDTEEASVQAL 322
Query: 306 SIAI 309
AI
Sbjct: 323 RDAI 326
>gi|440712941|ref|ZP_20893552.1| signal transduction histidine kinase with CheB and CheR activity
[Rhodopirellula baltica SWK14]
gi|436442329|gb|ELP35476.1| signal transduction histidine kinase with CheB and CheR activity
[Rhodopirellula baltica SWK14]
Length = 1637
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
EA+ + ITD S HPI FA++GF M+GFS EI+GRN R QG T+ T++
Sbjct: 991 EAVQSAANGIVITDCSSEDHPISFANKGFTDMTGFSEQEILGRNCRFLQGEHTDNETVLR 1050
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
IR A+ + + NY+K+G PFW ++ V E+G THFV VQ + R
Sbjct: 1051 IRRALGRGESVRELIKNYRKNGEPFWNDLYITPVH-DENGILTHFVGVQNDVTER 1104
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
V+ D D P+ +A+ F +TG+ E++G+NCRFL G TD + ++ A+
Sbjct: 1000 IVITDCSSEDHPISFANKGFTDMTGFSEQEILGRNCRFLQGEHTDNETVLRIRRAL 1055
>gi|417305855|ref|ZP_12092797.1| signal transduction histidine kinase with CheB and CheR activity
[Rhodopirellula baltica WH47]
gi|327537864|gb|EGF24566.1| signal transduction histidine kinase with CheB and CheR activity
[Rhodopirellula baltica WH47]
Length = 1637
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 64/115 (55%), Gaps = 1/115 (0%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
EA+ + ITD S HPI F ++GF M+GFS EIIGRN R QG T+ T++
Sbjct: 991 EAVQSAANGIVITDCSSEDHPITFVNKGFTDMTGFSEQEIIGRNCRFLQGEHTDNETVLR 1050
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
IR A+ + + NY+K+G PFW ++ V E+G THFV VQ + R
Sbjct: 1051 IRRALGRGESVRELIKNYRKNGEPFWNDLYITPVH-DENGILTHFVGVQNDVTER 1104
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
V+ D D P+ + + F +TG+ E++G+NCRFL G TD + ++ A+
Sbjct: 1000 IVITDCSSEDHPITFVNKGFTDMTGFSEQEIIGRNCRFLQGEHTDNETVLRIRRAL 1055
>gi|448503538|ref|ZP_21613167.1| bacterio-opsin activator [Halorubrum coriense DSM 10284]
gi|445691739|gb|ELZ43922.1| bacterio-opsin activator [Halorubrum coriense DSM 10284]
Length = 668
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 1/129 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
V A+++ P +I+DP +S +P+V+ + + +G+ E +GRN R QGP T+ T+
Sbjct: 144 VTRAVEDAPIGISISDPDLSDYPLVYVNDAWEDHTGYPVEEALGRNPRFLQGPGTDPETV 203
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
EI EA+ E + V + NY++DGTPFW ++ ++ EDG H+V Q + RK
Sbjct: 204 EEIAEALGNEEEVTVEIRNYRRDGTPFWNELTVAPIY-DEDGGLAHYVGFQNDVSERKEA 262
Query: 140 RNSGMSYSE 148
+E
Sbjct: 263 ERLAQERAE 271
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 258 DPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
DP L D P+VY +DA+ TGY E +G+N RFL G TD + +++ A+
Sbjct: 159 DPDLSDYPLVYVNDAWEDHTGYPVEEALGRNPRFLQGPGTDPETVEEIAEAL 210
>gi|441415749|dbj|BAH80322.2| aureochrome1-like protein [Ochromonas danica]
Length = 312
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 72/113 (63%), Gaps = 3/113 (2%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+AL +F I+DPSI +PIV+AS+GFL ++G++ +E++GRN R QGP T+ + + +
Sbjct: 186 KALQTAQQNFVISDPSIPDNPIVYASQGFLTLTGYALSEVLGRNCRFLQGPETDPKAVEK 245
Query: 82 IREAIREERPIEVNLLNYKKDGTPFW-MLFKMSLVFGKEDGRATHFVAVQVPI 133
+R+ + V LLNY+KDG+ FW LF +L G +G +++ VQ +
Sbjct: 246 VRKGLERGEDTTVVLLNYRKDGSTFWNQLFIAALRDG--EGNVVNYLGVQCKV 296
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 52/90 (57%), Gaps = 14/90 (15%)
Query: 230 RCSLPGMGFISS--------------SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLK 275
RCS G I+S SL +L +Q+FV+ DP +PD P+VYAS FL
Sbjct: 157 RCSCGGPSVIASDPNTATRTLDDPDYSLVKALQTAQQNFVISDPSIPDNPIVYASQGFLT 216
Query: 276 LTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
LTGY +EV+G+NCRFL G +TD + +V
Sbjct: 217 LTGYALSEVLGRNCRFLQGPETDPKAVEKV 246
>gi|367474602|ref|ZP_09474098.1| putative sensor histidine kinase with PAS/PAC and Response
regulator receiver domains [Bradyrhizobium sp. ORS 285]
gi|365273096|emb|CCD86566.1| putative sensor histidine kinase with PAS/PAC and Response
regulator receiver domains [Bradyrhizobium sp. ORS 285]
Length = 534
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 71/116 (61%), Gaps = 2/116 (1%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP + +PI+FA+R FL+M+G+ AEI+G N R QGP T+R TI +R AI + I
Sbjct: 42 VTDPRQNDNPILFANRAFLEMTGYRLAEIVGSNCRFLQGPDTDRDTIDAVRTAIANRQDI 101
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSE 148
V +LNY+K+G FW +S V+ + DG +F Q+ VSR+ S + S+
Sbjct: 102 AVEILNYRKNGAAFWNALFISPVYNR-DGELVYFFGSQLD-VSRRRDAESALVQSQ 155
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 41/68 (60%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP D P+++A+ AFL++TGY E+VG NCRFL G DTD +
Sbjct: 29 FFAAVETTRMPMIVTDPRQNDNPILFANRAFLEMTGYRLAEIVGSNCRFLQGPDTDRDTI 88
Query: 303 YQVSIAIS 310
V AI+
Sbjct: 89 DAVRTAIA 96
>gi|448443537|ref|ZP_21589577.1| HTR-like protein [Halorubrum saccharovorum DSM 1137]
gi|445686745|gb|ELZ39053.1| HTR-like protein [Halorubrum saccharovorum DSM 1137]
Length = 717
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Query: 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
+A+DE P +TDP +PI++A+ F ++G+ + EI+GRN R QG T +
Sbjct: 270 EQAIDEAPVGILLTDPHQDDNPIIYANDEFTDLTGYEKREIVGRNCRFLQGEATEDEPVQ 329
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+R AI P+ V L NY+KDGT FW +++ +F +DG FV Q + RK
Sbjct: 330 RLRTAIDNREPVTVELRNYRKDGTEFWNRVRVAPLF-DDDGEVDLFVGFQDDVTDRK 385
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 223 GRLVCGKRCSLPGMGFISSSLYISLGRIKQS---FVLIDPHLPDMPMVYASDAFLKLTGY 279
G L+C S +S+L + I ++ +L DPH D P++YA+D F LTGY
Sbjct: 248 GSLIC--TLSPQAADAAASNLSVKEQAIDEAPVGILLTDPHQDDNPIIYANDEFTDLTGY 305
Query: 280 DRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
++ E+VG+NCRFL G T+ + ++ AI
Sbjct: 306 EKREIVGRNCRFLQGEATEDEPVQRLRTAI 335
>gi|390167412|ref|ZP_10219402.1| PAS/PAC sensor hybrid histidine kinase [Sphingobium indicum B90A]
gi|389589962|gb|EIM67968.1| PAS/PAC sensor hybrid histidine kinase [Sphingobium indicum B90A]
Length = 572
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 67/105 (63%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP +PIVFA++ FL ++G+ +E++GRN R QG T+R T+ +REA+ + I
Sbjct: 71 LTDPRQDDNPIVFANKAFLDLTGYEESEVVGRNCRFLQGTDTDRETVRALREAVAAQEAI 130
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+LNY++DG+PFW ++ V+ +DG +F A Q+ + R+
Sbjct: 131 STEILNYRRDGSPFWNAVFVAPVY-DDDGTLIYFFASQLDVTRRR 174
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 55/98 (56%), Gaps = 2/98 (2%)
Query: 229 KRCSL--PGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVG 286
KR ++ PG+ + + +L + +L DP D P+V+A+ AFL LTGY+ +EVVG
Sbjct: 42 KRSTVAEPGLDQRGTVFFAALQMTRMPMILTDPRQDDNPIVFANKAFLDLTGYEESEVVG 101
Query: 287 QNCRFLNGVDTDTTVLYQVSIAISPYPKKKSIYMEYVR 324
+NCRFL G DTD + + A++ + + Y R
Sbjct: 102 RNCRFLQGTDTDRETVRALREAVAAQEAISTEILNYRR 139
>gi|358459156|ref|ZP_09169358.1| putative PAS/PAC sensor protein [Frankia sp. CN3]
gi|357077644|gb|EHI87101.1| putative PAS/PAC sensor protein [Frankia sp. CN3]
Length = 603
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 64/111 (57%), Gaps = 1/111 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
SFT+ DP P+ + + F +++G+S AE +GRN R QGPR++ + A RE
Sbjct: 30 SFTLADPYQPDTPLTWVNDAFTRITGYSFAEAVGRNCRFLQGPRSDPAAAARLGAAQRER 89
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140
RP V +LNY+KDG+ FW ++ V + DGR THFV VQ + R R
Sbjct: 90 RPTRVEILNYRKDGSTFWSEIALAPVLDR-DGRLTHFVGVQSDVTDRVEAR 139
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 32/46 (69%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
SF L DP+ PD P+ + +DAF ++TGY E VG+NCRFL G +D
Sbjct: 30 SFTLADPYQPDTPLTWVNDAFTRITGYSFAEAVGRNCRFLQGPRSD 75
>gi|188582577|ref|YP_001926022.1| histidine kinase [Methylobacterium populi BJ001]
gi|179346075|gb|ACB81487.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi
BJ001]
Length = 531
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
+ DP+ + HPIVF ++ FL+M+G+++AE+IG N R QGP T+ T ++R AI + R
Sbjct: 43 MVVVDPNQNDHPIVFVNQAFLEMTGYAKAEVIGHNCRFLQGPETDPATRAQVRAAIEQRR 102
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
I +LNY+KDG+ FW +S V+ G +F Q+ I R+ +
Sbjct: 103 DIATEILNYRKDGSSFWNALFVSPVYNAA-GDLVYFFGSQLDITRRRQAEEA 153
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 43/70 (61%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S + ++ + V++DP+ D P+V+ + AFL++TGY + EV+G NCRFL G +TD
Sbjct: 29 SDIFFAAVSMTRMPMVVVDPNQNDHPIVFVNQAFLEMTGYAKAEVIGHNCRFLQGPETDP 88
Query: 300 TVLYQVSIAI 309
QV AI
Sbjct: 89 ATRAQVRAAI 98
>gi|55377685|ref|YP_135535.1| HTR-like protein [Haloarcula marismortui ATCC 43049]
gi|55230410|gb|AAV45829.1| HTR-like protein [Haloarcula marismortui ATCC 43049]
Length = 748
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 83/165 (50%), Gaps = 6/165 (3%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ A+DE P TIT P PI +A+R FL+++G++ +E+ GRN R QG T +
Sbjct: 257 IKRAMDEAPVGITITGPKQEDTPISYANRQFLELTGYTESEVRGRNCRFLQGEETEAEPV 316
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
+R AI + P+ V L NY+KDGT FW ++ V DG ++V Q I RK
Sbjct: 317 DAMRAAIDADEPVSVELRNYRKDGTMFWNQVSIAPVRDN-DGTVVNYVGFQRDITERKEH 375
Query: 140 RNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSD 184
+ SE +++++ R EV + VL L+++
Sbjct: 376 ERRLKALSE-----SVQDLLQADTREEVAEIGVETARTVLGLEAN 415
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 7/70 (10%)
Query: 247 LGRIKQSF-------VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
L RIK++ + P D P+ YA+ FL+LTGY +EV G+NCRFL G +T+
Sbjct: 254 LSRIKRAMDEAPVGITITGPKQEDTPISYANRQFLELTGYTESEVRGRNCRFLQGEETEA 313
Query: 300 TVLYQVSIAI 309
+ + AI
Sbjct: 314 EPVDAMRAAI 323
>gi|289671649|ref|ZP_06492539.1| histidine kinase, partial [Pseudomonas syringae pv. syringae FF5]
Length = 259
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PI+FA++ FL+M+G++ EIIG N R QGP T+R + IR+AI E I
Sbjct: 37 VTDPNRPDNPIIFANQAFLEMTGYASEEIIGSNCRFLQGPDTDRAAVQSIRDAIEERVDI 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+LNY+KDG+ FW +S V+ + G +F A Q+ I R+
Sbjct: 97 STEILNYRKDGSSFWNALFISPVY-NDAGDLIYFFASQLDISRRR 140
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 42/67 (62%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP+ PD P+++A+ AFL++TGY E++G NCRFL G DTD +
Sbjct: 24 FFAAVETTRMPMIVTDPNRPDNPIIFANQAFLEMTGYASEEIIGSNCRFLQGPDTDRAAV 83
Query: 303 YQVSIAI 309
+ AI
Sbjct: 84 QSIRDAI 90
>gi|32473151|ref|NP_866145.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
gi|32397830|emb|CAD73831.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
Length = 1637
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
EA+ + ITD S+ HPI F ++GF M+GFS EI+GRN R QG T+ T++
Sbjct: 991 EAVQSAANGIVITDCSLEDHPISFVNKGFTDMTGFSEQEILGRNCRFLQGEHTDNETVLR 1050
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
IR A+ + + NY+K+G PFW ++ V E+G THFV VQ + R
Sbjct: 1051 IRRALGRGESVRELIKNYRKNGEPFWNDLYITPVH-DENGILTHFVGVQNDVTER 1104
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
V+ D L D P+ + + F +TG+ E++G+NCRFL G TD + ++ A+
Sbjct: 1000 IVITDCSLEDHPISFVNKGFTDMTGFSEQEILGRNCRFLQGEHTDNETVLRIRRAL 1055
>gi|326318271|ref|YP_004235943.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax avenae subsp.
avenae ATCC 19860]
gi|323375107|gb|ADX47376.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 544
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 64/105 (60%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP +PIVF +R F+ M+G+ +I+G N R QGP T+R T+ +REAI + R I
Sbjct: 45 VTDPRQPDNPIVFCNRAFVSMTGYQPQDILGHNCRFLQGPATDRNTVAALREAIEQRREI 104
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+ LLNY+KDG+ FW +S V+ G +F A Q+ + R+
Sbjct: 105 SLELLNYRKDGSTFWNALFISPVYNAR-GELVYFFASQLDVSRRR 148
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP PD P+V+ + AF+ +TGY +++G NCRFL G TD +
Sbjct: 32 FFAAIETTRMPMLVTDPRQPDNPIVFCNRAFVSMTGYQPQDILGHNCRFLQGPATDRNTV 91
Query: 303 YQVSIAISPYPKKKSIYMEYV 323
+ AI +++ I +E +
Sbjct: 92 AALREAIE---QRREISLELL 109
>gi|448492502|ref|ZP_21608893.1| signal-transducing histidine kinase/response regulator [Halorubrum
californiensis DSM 19288]
gi|445691117|gb|ELZ43311.1| signal-transducing histidine kinase/response regulator [Halorubrum
californiensis DSM 19288]
Length = 743
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 75/143 (52%), Gaps = 2/143 (1%)
Query: 7 LIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNG 66
+ EQ R + A+D T+TDP +P+V+ + F ++G+++AE +GRN
Sbjct: 382 ITEQRATERKLGILQTAIDNAHAPLTLTDPHKEDNPMVYVNEPFEDLTGYTKAEALGRNC 441
Query: 67 RMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHF 126
R QG T+ T+ + EAI E PI V + NY+KDGTPFW +++ V+ DG +
Sbjct: 442 RFLQGEDTDPATVARLGEAIDNEEPITVEIRNYRKDGTPFWNELRVAPVYDA-DGDLIRY 500
Query: 127 VAVQVPIVSRKHMRNSGMSYSED 149
+ Q + RK R + + D
Sbjct: 501 LGTQRDVTDRKE-RTQELQHQND 522
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 38/67 (56%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L ++ L DPH D PMVY ++ F LTGY + E +G+NCRFL G DTD +
Sbjct: 395 LQTAIDNAHAPLTLTDPHKEDNPMVYVNEPFEDLTGYTKAEALGRNCRFLQGEDTDPATV 454
Query: 303 YQVSIAI 309
++ AI
Sbjct: 455 ARLGEAI 461
>gi|241666844|ref|YP_002984928.1| signal transduction histidine kinase [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240862301|gb|ACS59966.1| signal transduction histidine kinase [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 375
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 68/105 (64%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PI+F + F KM+G+S E+IGRN R+ QGP T+RR++ IR+++ + I
Sbjct: 41 VTDPAQHDNPIIFCNAAFEKMTGYSNDELIGRNCRLLQGPETDRRSVGYIRDSVARGQDI 100
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
V++LNY+KDG+ FW +S V E GR +F A Q+ + K
Sbjct: 101 SVDILNYRKDGSTFWNALFISPVRDDE-GRIIYFFASQLDFTTVK 144
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 32/48 (66%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+ ++ DP D P+++ + AF K+TGY +E++G+NCR L G +TD
Sbjct: 36 RMPMIVTDPAQHDNPIIFCNAAFEKMTGYSNDELIGRNCRLLQGPETD 83
>gi|226374632|gb|ACO52468.1| neochrome [Allantodia dilatata]
Length = 1425
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + SF ITDP + +PI+FAS FL+++ +SR +++G N R QG T+R+ + IR
Sbjct: 921 LERIGHSFVITDPRLPDNPIIFASDQFLELTEYSREDVLGENCRFLQGRDTDRKAVQLIR 980
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
+A++E R + V LLNY + PFW LF + + K+ G +F+ VQ
Sbjct: 981 DAVKEGRDVTVQLLNYTRSRRPFWNLFHLQAMRDKK-GNLQYFIGVQ 1026
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 46/67 (68%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI SFV+ DP LPD P+++ASD FL+LT Y R +V+G+NCRFL G DTD +
Sbjct: 917 LATTLERIGHSFVITDPRLPDNPIIFASDQFLELTEYSREDVLGENCRFLQGRDTDRKAV 976
Query: 303 YQVSIAI 309
+ A+
Sbjct: 977 QLIRDAV 983
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 66/130 (50%), Gaps = 15/130 (11%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
SF + D PI+FAS GF ++G + E+IG N R QGP T+ I IR+A+ +
Sbjct: 659 SFVVVDALKPDLPIIFASTGFFNLTGCTSREVIGGNCRFLQGPDTDPEDIASIRDAVVPQ 718
Query: 90 RPIEV--NLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPIVSRKHMRNSGMSY 146
LLNY+KDG+ FW L ++ + K+D G F+ VQ+ + Y
Sbjct: 719 GTGTFCGRLLNYRKDGSNFWNLLTIAPI--KDDSGTIVKFIGVQLEV----------SKY 766
Query: 147 SEDGGGSRLR 156
+E +RLR
Sbjct: 767 TEGSRANRLR 776
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
+ SFV++D PD+P+++AS F LTG EV+G NCRFL G DTD + + A+
Sbjct: 657 QTSFVVVDALKPDLPIIFASTGFFNLTGCTSREVIGGNCRFLQGPDTDPEDIASIRDAVV 716
Query: 311 P 311
P
Sbjct: 717 P 717
>gi|389845791|ref|YP_006348030.1| bacterioopsin activator [Haloferax mediterranei ATCC 33500]
gi|448616589|ref|ZP_21665299.1| bacterio-opsin activator [Haloferax mediterranei ATCC 33500]
gi|388243097|gb|AFK18043.1| bacterioopsin activator [Haloferax mediterranei ATCC 33500]
gi|445751244|gb|EMA02681.1| bacterio-opsin activator [Haloferax mediterranei ATCC 33500]
Length = 667
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 63/116 (54%), Gaps = 1/116 (0%)
Query: 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
+A+DE P TI D S+ P+V+ + F ++G+S +GRN R QGPRTN +
Sbjct: 135 EQAMDEAPVGITIADCSLPDLPLVYVNEAFESLTGYSAEAALGRNCRYLQGPRTNLEQVA 194
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
E+R AI E V LLNY++ G FW ++ + G DG TH+V Q I R
Sbjct: 195 ELRRAIEAEESASVELLNYRESGETFWNRVDVAPLSGP-DGAVTHYVGFQTDITER 249
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ D LPD+P+VY ++AF LTGY +G+NCR+L G T+ + ++ AI
Sbjct: 145 ITIADCSLPDLPLVYVNEAFESLTGYSAEAALGRNCRYLQGPRTNLEQVAELRRAI 200
>gi|431930291|ref|YP_007243337.1| PAS domain-containing protein [Thioflavicoccus mobilis 8321]
gi|431828594|gb|AGA89707.1| PAS domain S-box [Thioflavicoccus mobilis 8321]
Length = 155
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 71/123 (57%), Gaps = 1/123 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ + LD + T++DP + +PIV+A+ F ++G+ R EI+GRN R QG + +
Sbjct: 16 LSQILDTCVNGITLSDPDLPDNPIVYANEAFELITGYDREEILGRNCRFLQGEEQEQPEV 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
IREA+ EERP+ V L NY+KDGT F+ F + +F + GR +++ VQ + +
Sbjct: 76 ERIREALSEERPVTVTLRNYRKDGTLFYNQFTIRPLFDPQ-GRLIYYLGVQYDVTEKVRA 134
Query: 140 RNS 142
R
Sbjct: 135 REE 137
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 40/56 (71%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
L DP LPD P+VYA++AF +TGYDR E++G+NCRFL G + + + ++ A+S
Sbjct: 28 TLSDPDLPDNPIVYANEAFELITGYDREEILGRNCRFLQGEEQEQPEVERIREALS 83
>gi|157694031|ref|YP_001488493.1| hypothetical protein BPUM_3280 [Bacillus pumilus SAFR-032]
gi|194016222|ref|ZP_03054836.1| YtvA [Bacillus pumilus ATCC 7061]
gi|157682789|gb|ABV63933.1| hypothetical protein BPUM_3280 [Bacillus pumilus SAFR-032]
gi|194011695|gb|EDW21263.1| YtvA [Bacillus pumilus ATCC 7061]
Length = 262
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 73/132 (55%), Gaps = 1/132 (0%)
Query: 10 QSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMF 69
+S+ + + EALD T+TDPS+ +P+++ ++GFL M+G+ E++G+N R
Sbjct: 4 ESYKSENLHLIKEALDYTQVGLTVTDPSLPDNPLIYVNKGFLDMTGYQEPEVLGKNCRFL 63
Query: 70 QGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMS-LVFGKEDGRATHFVA 128
QG T + + +IR AI + + V L NYKK G FW ++ L + +G+ +FV
Sbjct: 64 QGNETEQIALQQIRTAIENKEAVTVQLKNYKKSGQMFWNELSVAPLWIDENEGKRLYFVG 123
Query: 129 VQVPIVSRKHMR 140
+Q + K +
Sbjct: 124 LQKDVTKEKEQQ 135
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 36/56 (64%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ DP LPD P++Y + FL +TGY EV+G+NCRFL G +T+ L Q+ AI
Sbjct: 25 LTVTDPSLPDNPLIYVNKGFLDMTGYQEPEVLGKNCRFLQGNETEQIALQQIRTAI 80
>gi|448561065|ref|ZP_21634417.1| PAS-PAC-PAC sensing histidine kinase [Haloferax prahovense DSM
18310]
gi|445721297|gb|ELZ72965.1| PAS-PAC-PAC sensing histidine kinase [Haloferax prahovense DSM
18310]
Length = 871
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 3/119 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+D TIT+ P+ + + F +M+G+ R+E++GRN R QG T+ + ++
Sbjct: 163 AMDSATVGITITEAD-DDQPLTYINDAFEEMTGYDRSEVLGRNCRFLQGEETDSEPVEKL 221
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
EAI + V+L NY+KDGTPFW K+S V+ EDG THFV Q R ++N
Sbjct: 222 HEAIEAGESVAVSLTNYRKDGTPFWNELKISPVY--EDGELTHFVGFQTDATVRHALKN 278
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 36/47 (76%)
Query: 263 DMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
D P+ Y +DAF ++TGYDR+EV+G+NCRFL G +TD+ + ++ AI
Sbjct: 179 DQPLTYINDAFEEMTGYDRSEVLGRNCRFLQGEETDSEPVEKLHEAI 225
>gi|424878480|ref|ZP_18302120.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WU95]
gi|392520972|gb|EIW45701.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WU95]
Length = 411
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 68/105 (64%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PI+F + F KM+G+S E+IGRN R+ QGP T+RR++ IR+++ + I
Sbjct: 77 VTDPAQHDNPIIFCNAAFEKMTGYSNDELIGRNCRLLQGPETDRRSVGYIRDSVARGQDI 136
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
V++LNY+KDG+ FW +S V E GR +F A Q+ + K
Sbjct: 137 SVDILNYRKDGSTFWNALFISPVRDDE-GRIIYFFASQLDFTTVK 180
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 32/48 (66%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+ ++ DP D P+++ + AF K+TGY +E++G+NCR L G +TD
Sbjct: 72 RMPMIVTDPAQHDNPIIFCNAAFEKMTGYSNDELIGRNCRLLQGPETD 119
>gi|254418026|ref|ZP_05031750.1| PAS fold family [Brevundimonas sp. BAL3]
gi|196184203|gb|EDX79179.1| PAS fold family [Brevundimonas sp. BAL3]
Length = 878
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 64/104 (61%), Gaps = 1/104 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
IT+P +P+VFA+ F +++G++R EI+GRN R QGP T+ + IR A+ R
Sbjct: 53 MVITNPRRPDNPVVFANEAFCRLTGYAREEILGRNCRFLQGPETDPEAVSRIRAAVDAVR 112
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
PIE+++ N++KDG PFW M+ VF +G +F A QV +
Sbjct: 113 PIEIDIRNHRKDGAPFWNRLLMAPVF-DGNGVLAYFFASQVDVT 155
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 41/59 (69%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ V+ +P PD P+V+A++AF +LTGY R E++G+NCRFL G +TD + ++ A+
Sbjct: 50 RMPMVITNPRRPDNPVVFANEAFCRLTGYAREEILGRNCRFLQGPETDPEAVSRIRAAV 108
>gi|66045936|ref|YP_235777.1| histidine kinase [Pseudomonas syringae pv. syringae B728a]
gi|75501925|sp|Q4ZSY3.1|LOVHK_PSEU2 RecName: Full=Blue-light-activated protein; Includes: RecName:
Full=Blue-light-activated histidine kinase; Includes:
RecName: Full=Response regulator
gi|63256643|gb|AAY37739.1| PAS [Pseudomonas syringae pv. syringae B728a]
Length = 534
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PI+FA+R FL+M+G++ EIIG N R QGP T+R + IR+AI + I
Sbjct: 37 VTDPNRPDNPIIFANRAFLEMTGYASEEIIGSNCRFLQGPDTDRTAVQSIRDAIDQRVDI 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+LNY+KDG+ FW +S V+ + G +F A Q+ I R+
Sbjct: 97 STEILNYRKDGSSFWNALFISPVY-NDAGELIYFFASQLDISRRR 140
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 43/67 (64%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP+ PD P+++A+ AFL++TGY E++G NCRFL G DTD T +
Sbjct: 24 FFAAVETTRMPMIVTDPNRPDNPIIFANRAFLEMTGYASEEIIGSNCRFLQGPDTDRTAV 83
Query: 303 YQVSIAI 309
+ AI
Sbjct: 84 QSIRDAI 90
>gi|365882894|ref|ZP_09422078.1| putative sensor histidine kinase with PAS/PAC and Response
regulator receiver domains [Bradyrhizobium sp. ORS 375]
gi|365288600|emb|CCD94609.1| putative sensor histidine kinase with PAS/PAC and Response
regulator receiver domains [Bradyrhizobium sp. ORS 375]
Length = 534
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 72/116 (62%), Gaps = 2/116 (1%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP + +PI+FA+R FL+M+G+ +EI+G N R QGP T+R TI +R AI + I
Sbjct: 42 VTDPRQNDNPILFANRAFLEMTGYDLSEIVGSNCRFLQGPDTDRDTIDAVRTAIANRQDI 101
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSE 148
V +LNY+K+G+ FW +S V+ + DG +F Q+ VSR+ S + S+
Sbjct: 102 AVEILNYRKNGSAFWNALFISPVYNR-DGELVYFFGSQLD-VSRRRDAESALVQSQ 155
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 43/68 (63%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP D P+++A+ AFL++TGYD +E+VG NCRFL G DTD +
Sbjct: 29 FFAAVETTRMPMIVTDPRQNDNPILFANRAFLEMTGYDLSEIVGSNCRFLQGPDTDRDTI 88
Query: 303 YQVSIAIS 310
V AI+
Sbjct: 89 DAVRTAIA 96
>gi|219126126|ref|XP_002183315.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217405071|gb|EEC45015.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 120
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 55/78 (70%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
SF ITDPS+ +PIVFAS FLK++G++R +++GRN R QG T++ + +IR+ + E
Sbjct: 18 SFMITDPSLQDNPIVFASDDFLKLTGYTREQVLGRNCRFLQGTETSQEKVNQIRKNLSEG 77
Query: 90 RPIEVNLLNYKKDGTPFW 107
+ V L+NY DGTPFW
Sbjct: 78 EDVTVTLMNYTADGTPFW 95
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 48/81 (59%)
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTV 301
+L S+ + SF++ DP L D P+V+ASD FLKLTGY R +V+G+NCRFL G +T
Sbjct: 7 NLVRSIQSSQHSFMITDPSLQDNPIVFASDDFLKLTGYTREQVLGRNCRFLQGTETSQEK 66
Query: 302 LYQVSIAISPYPKKKSIYMEY 322
+ Q+ +S M Y
Sbjct: 67 VNQIRKNLSEGEDVTVTLMNY 87
>gi|170749966|ref|YP_001756226.1| histidine kinase [Methylobacterium radiotolerans JCM 2831]
gi|170656488|gb|ACB25543.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
radiotolerans JCM 2831]
Length = 539
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP +PI+FA+R FL M+G++ E+IGRN R QGP T+R ++ ++R AI E+R
Sbjct: 45 VTDPRQPDNPIIFANRAFLAMTGYTPEELIGRNCRFLQGPDTDRDSVAQVRAAIAEKREF 104
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+LNY+K+G+ FW +S V+ DG ++ Q+ + R+
Sbjct: 105 ATEILNYRKNGSTFWNALFVSPVY-NADGELVYYFGSQLDVSRRR 148
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 44/71 (61%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S + ++ + ++ DP PD P+++A+ AFL +TGY E++G+NCRFL G DTD
Sbjct: 29 SDIFFAAVETTRMPMIVTDPRQPDNPIIFANRAFLAMTGYTPEELIGRNCRFLQGPDTDR 88
Query: 300 TVLYQVSIAIS 310
+ QV AI+
Sbjct: 89 DSVAQVRAAIA 99
>gi|220920804|ref|YP_002496105.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
ORS 2060]
gi|219945410|gb|ACL55802.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
ORS 2060]
Length = 814
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 63/99 (63%), Gaps = 1/99 (1%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP + +PIVFA+ F ++G++ +++GRN R+ QGP T+ T+ IR AI E R I
Sbjct: 43 LTDPHLPDNPIVFANAAFQALTGYAEEDLVGRNCRLLQGPDTDPATVARIRAAIAEGREI 102
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
++LNY+KDG PFW + VF E GR +F A QV
Sbjct: 103 RASILNYRKDGRPFWNELFVCPVF-DEAGRLINFFASQV 140
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 48/76 (63%)
Query: 247 LGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVS 306
L R +Q +L DPHLPD P+V+A+ AF LTGY ++VG+NCR L G DTD + ++
Sbjct: 34 LERTRQPMILTDPHLPDNPIVFANAAFQALTGYAEEDLVGRNCRLLQGPDTDPATVARIR 93
Query: 307 IAISPYPKKKSIYMEY 322
AI+ + ++ + Y
Sbjct: 94 AAIAEGREIRASILNY 109
>gi|429856375|gb|ELA31285.1| blue light receptor [Colletotrichum gloeosporioides Nara gc5]
Length = 875
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 68/105 (64%), Gaps = 1/105 (0%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L D F +T+PS++ +PIVFAS GF+K++G++R EII RN R QG T+R I ++ AI
Sbjct: 563 LGDCFCLTNPSVADNPIVFASDGFVKVTGYTRPEIIPRNCRFLQGAHTDRVPIRRLKNAI 622
Query: 87 REERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
E + +LNYKK+G PFW L ++ ++ E G+ F+ Q+
Sbjct: 623 DERKESVELILNYKKNGDPFWNLLYVAPLY-NEAGKLAFFIGGQI 666
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 38/56 (67%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
F L +P + D P+V+ASD F+K+TGY R E++ +NCRFL G TD + ++ AI
Sbjct: 567 FCLTNPSVADNPIVFASDGFVKVTGYTRPEIIPRNCRFLQGAHTDRVPIRRLKNAI 622
>gi|289661717|ref|ZP_06483298.1| histidine kinase [Xanthomonas campestris pv. vasculorum NCPPB 702]
Length = 541
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
T+TDP + +PIVFA+R FL+M+G+S E+IG N R QGP T+ +I ++RE+I
Sbjct: 41 MTVTDPHLPDNPIVFANRAFLEMTGYSADEVIGNNCRFLQGPETDPASISDVRESIEARS 100
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S VF + G +F Q+ + R+ ++
Sbjct: 101 EFATEVLNYRKDGSSFWNALFVSPVF-DDKGNLVYFFGSQLDVSRRRDAEDA 151
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 47/78 (60%)
Query: 232 SLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRF 291
SLP S + ++ + + DPHLPD P+V+A+ AFL++TGY +EV+G NCRF
Sbjct: 19 SLPVEKHRSDIFFAAVETTRMPMTVTDPHLPDNPIVFANRAFLEMTGYSADEVIGNNCRF 78
Query: 292 LNGVDTDTTVLYQVSIAI 309
L G +TD + V +I
Sbjct: 79 LQGPETDPASISDVRESI 96
>gi|440724213|ref|ZP_20904546.1| multi-sensor hybrid histidine kinase [Pseudomonas syringae
BRIP34876]
gi|440726639|ref|ZP_20906891.1| multi-sensor hybrid histidine kinase [Pseudomonas syringae
BRIP34881]
gi|440358235|gb|ELP95617.1| multi-sensor hybrid histidine kinase [Pseudomonas syringae
BRIP34876]
gi|440365869|gb|ELQ02957.1| multi-sensor hybrid histidine kinase [Pseudomonas syringae
BRIP34881]
Length = 647
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 59/96 (61%), Gaps = 1/96 (1%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
ITDP +PIVFA+ F +++G++ +++GRN R QGP TN+ I +R+AIR P
Sbjct: 3 ITDPRQDDNPIVFANAAFYQLTGYAAEDVVGRNCRFLQGPATNQDHIAMVRDAIRRREPT 62
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVA 128
E+ L NY+KDG FW + VFG E G +F A
Sbjct: 63 EIKLQNYRKDGKSFWNHLHVHPVFGGE-GELVYFFA 97
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
++ DP D P+V+A+ AF +LTGY +VVG+NCRFL G T+ + V AI
Sbjct: 2 LITDPRQDDNPIVFANAAFYQLTGYAAEDVVGRNCRFLQGPATNQDHIAMVRDAI 56
>gi|357406412|ref|YP_004918336.1| PAS sensor protein [Methylomicrobium alcaliphilum 20Z]
gi|351719077|emb|CCE24751.1| PAS sensor protein [Methylomicrobium alcaliphilum 20Z]
Length = 164
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 74/121 (61%), Gaps = 1/121 (0%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+ LD + T++DP + +PIVFA+ F K++G+SR +IIG+N R QG ++ I
Sbjct: 18 QILDGCVNGITLSDPDLEDNPIVFANEVFEKITGYSRDDIIGKNCRFLQGKDHDQPEIEI 77
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
+REAIR +R +EV L NYKK+G F+ ++ +F E GR +F+ +Q I + H ++
Sbjct: 78 LREAIRNQRAVEVTLKNYKKNGDLFYNRLSVTPLFDNE-GRLIYFLGIQYDITEQIHAQH 136
Query: 142 S 142
Sbjct: 137 E 137
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 33/44 (75%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
L DP L D P+V+A++ F K+TGY R++++G+NCRFL G D D
Sbjct: 28 TLSDPDLEDNPIVFANEVFEKITGYSRDDIIGKNCRFLQGKDHD 71
>gi|448468122|ref|ZP_21599753.1| bacterio-opsin activator [Halorubrum kocurii JCM 14978]
gi|445810865|gb|EMA60879.1| bacterio-opsin activator [Halorubrum kocurii JCM 14978]
Length = 668
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 68/116 (58%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+ E P +I+DP + +P+V+A+ ++ +G+ E +GRN R QGP T+ T+ I
Sbjct: 145 AVAEAPVGVSISDPDLPDYPLVYANEAWVDHTGYPIEEALGRNPRFLQGPGTDPETVERI 204
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
+A+ + I V + NY+KDGTPFW ++ V+ +DG H+V Q + RK+
Sbjct: 205 AKAVADNEEITVEIRNYRKDGTPFWNELTVAPVY-DDDGEIAHYVGFQNDVTDRKN 259
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 75/147 (51%), Gaps = 5/147 (3%)
Query: 166 EVCSDSLLDLDRVLALDSDDTGLEIEDSCE--ASDLEKRKAATAIDNILSVLTHYSQLTG 223
E +D+ L++ VL +DD D+ E +++ R +ID ++S ++ ++ T
Sbjct: 66 EAIADADLEVPVVL-FTADDEEARAADARERGIAEVRHRNGTGSIDRLVSDVS--TRCTD 122
Query: 224 RLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNE 283
G R + ++ + ++ + DP LPD P+VYA++A++ TGY E
Sbjct: 123 GPPPGARQDVSDHKPSATEMKRAVAEAPVGVSISDPDLPDYPLVYANEAWVDHTGYPIEE 182
Query: 284 VVGQNCRFLNGVDTDTTVLYQVSIAIS 310
+G+N RFL G TD + +++ A++
Sbjct: 183 ALGRNPRFLQGPGTDPETVERIAKAVA 209
>gi|422672416|ref|ZP_16731780.1| histidine kinase [Pseudomonas syringae pv. aceris str. M302273]
gi|330970154|gb|EGH70220.1| histidine kinase [Pseudomonas syringae pv. aceris str. M302273]
Length = 502
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PI+FA+R FL+M+G++ EIIG N R QGP T+R + IR+AI + I
Sbjct: 5 VTDPNRPDNPIIFANRAFLEMTGYASEEIIGSNCRFLQGPDTDRTAVQSIRDAIDQRVDI 64
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+LNY+KDG+ FW +S V+ + G +F A Q+ I R+
Sbjct: 65 STEILNYRKDGSSFWNALFISPVY-NDAGELIYFFASQLDISRRR 108
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 39/56 (69%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
++ DP+ PD P+++A+ AFL++TGY E++G NCRFL G DTD T + + AI
Sbjct: 3 MIVTDPNRPDNPIIFANRAFLEMTGYASEEIIGSNCRFLQGPDTDRTAVQSIRDAI 58
>gi|284993377|ref|YP_003411932.1| putative PAS/PAC sensor protein [Geodermatophilus obscurus DSM
43160]
gi|284066623|gb|ADB77561.1| putative PAS/PAC sensor protein [Geodermatophilus obscurus DSM
43160]
Length = 760
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 62/104 (59%), Gaps = 1/104 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+FTITDP P+V+ + F +++G+S E +GRN R QGP T+ T+ EIR A+R
Sbjct: 195 AFTITDPRQPDDPLVWVNPSFGRITGYSYEEAVGRNCRFLQGPATDPATVAEIRAALRAR 254
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+ I LLN++KDGT FW +S VF E G FV VQ +
Sbjct: 255 QAITTTLLNHRKDGTAFWNQLSVSPVFDGE-GELVSFVGVQTDV 297
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+F + DP PD P+V+ + +F ++TGY E VG+NCRFL G TD + ++ A+
Sbjct: 195 AFTITDPRQPDDPLVWVNPSFGRITGYSYEEAVGRNCRFLQGPATDPATVAEIRAAL 251
>gi|422631639|ref|ZP_16696822.1| histidine kinase [Pseudomonas syringae pv. pisi str. 1704B]
gi|330941469|gb|EGH44279.1| histidine kinase [Pseudomonas syringae pv. pisi str. 1704B]
Length = 534
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PI+FA++ FL+M+G++ EIIG N R QGP T+R + IR+AI E I
Sbjct: 37 VTDPNRPDNPIIFANQAFLEMTGYASEEIIGSNCRFLQGPDTDRAAVQSIRDAIEERVDI 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+LNY+KDG+ FW +S V+ + G +F A Q+ I R+
Sbjct: 97 STEILNYRKDGSSFWNALFISPVY-NDAGDLIYFFASQLDISRRR 140
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 42/67 (62%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP+ PD P+++A+ AFL++TGY E++G NCRFL G DTD +
Sbjct: 24 FFAAVETTRMPMIVTDPNRPDNPIIFANQAFLEMTGYASEEIIGSNCRFLQGPDTDRAAV 83
Query: 303 YQVSIAI 309
+ AI
Sbjct: 84 QSIRDAI 90
>gi|448611043|ref|ZP_21661677.1| bacterio-opsin activator [Haloferax mucosum ATCC BAA-1512]
gi|445743475|gb|ELZ94956.1| bacterio-opsin activator [Haloferax mucosum ATCC BAA-1512]
Length = 659
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 63/116 (54%), Gaps = 1/116 (0%)
Query: 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
+A+DE P TI D S+ P+V+ + F M+G+S +GRN R QGP+T+ +
Sbjct: 135 EQAMDEAPVGITIADCSLPDRPLVYVNEAFESMTGYSEDAALGRNCRYLQGPKTDPEQVT 194
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+R AI E V LLNY++DG FW ++ + G DG TH+V Q I R
Sbjct: 195 ALRRAIDAEESASVELLNYREDGESFWNRVDVAPLSGP-DGEVTHYVGFQTDITER 249
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+ D LPD P+VY ++AF +TGY + +G+NCR+L G TD
Sbjct: 145 ITIADCSLPDRPLVYVNEAFESMTGYSEDAALGRNCRYLQGPKTD 189
>gi|157693427|ref|YP_001487889.1| hypothetical protein BPUM_2671 [Bacillus pumilus SAFR-032]
gi|157682185|gb|ABV63329.1| hypothetical protein BPUM_2671 [Bacillus pumilus SAFR-032]
Length = 267
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 69/118 (58%), Gaps = 1/118 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +ALD ITDPS+ +PI++ + GF M+G+ EI+GRN R QG T+++ +
Sbjct: 16 IKKALDHARIGVVITDPSLEDNPIIYVNHGFTHMTGYKPDEILGRNCRFLQGKDTDQKQL 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
IR+ I+ + PI L NYKKDGT FW + ++ ++D + T F+ Q I +K
Sbjct: 76 DLIRQGIQNKTPITTQLKNYKKDGTFFWNELNIDPLYIEQDDK-TFFIGFQKDITKQK 132
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 34/53 (64%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+L + V+ DP L D P++Y + F +TGY +E++G+NCRFL G DTD
Sbjct: 19 ALDHARIGVVITDPSLEDNPIIYVNHGFTHMTGYKPDEILGRNCRFLQGKDTD 71
>gi|440228645|ref|YP_007335729.1| two-component sensor histidine kinase protein [Rhizobium tropici
CIAT 899]
gi|440040353|gb|AGB73183.1| two-component sensor histidine kinase protein [Rhizobium tropici
CIAT 899]
Length = 368
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 70/105 (66%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
ITDP+ +PI+F + F +++G+S E+IGRN R+ QGP T+R T+ +R+A+ R +
Sbjct: 40 ITDPNQHDNPIIFCNGAFERLTGYSSDELIGRNCRILQGPETSRDTVAVVRDAVAGGRSV 99
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
V++LNYKKDG+ FW ++ V+ ++ G+ T+F A Q+ + K
Sbjct: 100 SVDILNYKKDGSAFWNALFINPVWDRQ-GQITYFFASQLDFTNIK 143
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 10/76 (13%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDT--DTTVLYQ------- 304
++ DP+ D P+++ + AF +LTGY +E++G+NCR L G +T DT + +
Sbjct: 38 MIITDPNQHDNPIIFCNGAFERLTGYSSDELIGRNCRILQGPETSRDTVAVVRDAVAGGR 97
Query: 305 -VSIAISPYPKKKSIY 319
VS+ I Y K S +
Sbjct: 98 SVSVDILNYKKDGSAF 113
>gi|433676226|ref|ZP_20508362.1| Blue-light-activated protein Includes: RecName:
Full=Blue-light-activated histidine kinase [Xanthomonas
translucens pv. translucens DSM 18974]
gi|430818652|emb|CCP38640.1| Blue-light-activated protein Includes: RecName:
Full=Blue-light-activated histidine kinase [Xanthomonas
translucens pv. translucens DSM 18974]
Length = 542
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 67/110 (60%), Gaps = 1/110 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP + +PIVF +R FL+M+G+S E++G N R QGP T+R T+ +REAI +
Sbjct: 43 VTDPRQADNPIVFVNRAFLEMTGYSSEELLGNNCRFLQGPDTDRDTVDSVREAIAARSEV 102
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
V +LNY+KDG+ FW +S V+ E G ++ Q+ + R+ ++
Sbjct: 103 AVEILNYRKDGSSFWNALFISPVY-NEHGELVYYFGSQLDVSRRRDTEDA 151
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S + ++ + ++ DP D P+V+ + AFL++TGY E++G NCRFL G DTD
Sbjct: 27 SDIFFAAVETTRMPMIVTDPRQADNPIVFVNRAFLEMTGYSSEELLGNNCRFLQGPDTDR 86
Query: 300 TVLYQVSIAIS 310
+ V AI+
Sbjct: 87 DTVDSVREAIA 97
>gi|94494912|ref|ZP_01301493.1| sensor histidine kinase [Sphingomonas sp. SKA58]
gi|94425178|gb|EAT10198.1| sensor histidine kinase [Sphingomonas sp. SKA58]
Length = 570
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 67/110 (60%), Gaps = 1/110 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP +PIVFA++ FL ++G+ +EI+GRN R QG T+R + ++REA++ I
Sbjct: 68 LTDPRQDDNPIVFANKAFLDLTGYEESEIVGRNCRFLQGADTDRGAVSDLREAVKHREAI 127
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+ +LNYK+DGT FW ++ VF + G +F A Q+ + R+ S
Sbjct: 128 SLEILNYKRDGTAFWNAVFIAPVF-DDHGELIYFFASQLDVTRRRSSEQS 176
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 229 KRCSL--PGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVG 286
KR ++ PG+ + + +L + +L DP D P+V+A+ AFL LTGY+ +E+VG
Sbjct: 39 KRSTIAEPGLEQRGTVFFAALQMTRMPMILTDPRQDDNPIVFANKAFLDLTGYEESEIVG 98
Query: 287 QNCRFLNGVDTDTTVLYQVSIAISPYPKKKSIYMEYV 323
+NCRFL G DTD + + A+ +++I +E +
Sbjct: 99 RNCRFLQGADTDRGAVSDLREAVK---HREAISLEIL 132
>gi|440723539|ref|ZP_20903902.1| histidine kinase [Pseudomonas syringae BRIP34876]
gi|440728023|ref|ZP_20908246.1| histidine kinase [Pseudomonas syringae BRIP34881]
gi|443643766|ref|ZP_21127616.1| Signal transduction histidine kinase [Pseudomonas syringae pv.
syringae B64]
gi|440359514|gb|ELP96822.1| histidine kinase [Pseudomonas syringae BRIP34876]
gi|440362552|gb|ELP99739.1| histidine kinase [Pseudomonas syringae BRIP34881]
gi|443283783|gb|ELS42788.1| Signal transduction histidine kinase [Pseudomonas syringae pv.
syringae B64]
Length = 534
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PI+FA++ FL+M+G++ EIIG N R QGP T+R + IR+AI E I
Sbjct: 37 VTDPNRPDNPIIFANQAFLEMTGYASEEIIGSNCRFLQGPDTDRAAVQSIRDAIEERVDI 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+LNY+KDG+ FW +S V+ + G +F A Q+ I R+
Sbjct: 97 STEILNYRKDGSSFWNALFISPVY-NDAGDLIYFFASQLDISRRR 140
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 42/67 (62%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP+ PD P+++A+ AFL++TGY E++G NCRFL G DTD +
Sbjct: 24 FFAAVETTRMPMIVTDPNRPDNPIIFANQAFLEMTGYASEEIIGSNCRFLQGPDTDRAAV 83
Query: 303 YQVSIAI 309
+ AI
Sbjct: 84 QSIRDAI 90
>gi|395493461|ref|ZP_10425040.1| histidine kinase [Sphingomonas sp. PAMC 26617]
Length = 536
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
+TDP +P++F + F M+G+S AEIIG N R QGP T+R ++ ++R AI E +
Sbjct: 48 MVVTDPHQPDNPVIFCNEAFRHMTGYSDAEIIGINCRFLQGPETDRDSVAQVRRAIAERQ 107
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+ V +LNY+K+G+ FW +S VF E G+ +F A Q+ + R+ +
Sbjct: 108 EVSVEILNYRKNGSTFWNALFISPVF-DESGKLIYFFASQLDVSRRREAEEA 158
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S + ++ + V+ DPH PD P+++ ++AF +TGY E++G NCRFL G +TD
Sbjct: 34 SDIFFAAVKTTRMPMVVTDPHQPDNPVIFCNEAFRHMTGYSDAEIIGINCRFLQGPETDR 93
Query: 300 TVLYQVSIAIS 310
+ QV AI+
Sbjct: 94 DSVAQVRRAIA 104
>gi|440733760|ref|ZP_20913441.1| histidine kinase [Xanthomonas translucens DAR61454]
gi|440358988|gb|ELP96317.1| histidine kinase [Xanthomonas translucens DAR61454]
Length = 542
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 67/110 (60%), Gaps = 1/110 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP + +PIVF +R FL+M+G+S E++G N R QGP T+R T+ +REAI +
Sbjct: 43 VTDPRQADNPIVFVNRAFLEMTGYSSEELLGNNCRFLQGPDTDRDTVDSVREAIAARSEV 102
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
V +LNY+KDG+ FW +S V+ E G ++ Q+ + R+ ++
Sbjct: 103 AVEILNYRKDGSSFWNALFISPVY-NEHGELVYYFGSQLDVSRRRDTEDA 151
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S + ++ + ++ DP D P+V+ + AFL++TGY E++G NCRFL G DTD
Sbjct: 27 SDIFFAAVETTRMPMIVTDPRQADNPIVFVNRAFLEMTGYSSEELLGNNCRFLQGPDTDR 86
Query: 300 TVLYQVSIAIS 310
+ V AI+
Sbjct: 87 DTVDSVREAIA 97
>gi|448308948|ref|ZP_21498819.1| PAS/PAC sensor signal transduction histidine kinase [Natronorubrum
bangense JCM 10635]
gi|445592334|gb|ELY46522.1| PAS/PAC sensor signal transduction histidine kinase [Natronorubrum
bangense JCM 10635]
Length = 480
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 67/117 (57%), Gaps = 1/117 (0%)
Query: 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
++A+DE P TI DP+ P+++ + GF +++G+ R EI+G+N R QG T +
Sbjct: 17 YQAMDEAPIGITIADPAKLDDPLIYVNDGFCELTGYPRDEILGQNCRFLQGENTREEPVA 76
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
++R AI E P+ V L NY+KDG+ FW + + E G TH++ Q I + K
Sbjct: 77 KMRAAIEAEEPVTVELRNYRKDGSMFWNRVTL-IPIQSESGTVTHYLGYQQDITAEK 132
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%)
Query: 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLY 303
Y ++ + DP D P++Y +D F +LTGY R+E++GQNCRFL G +T +
Sbjct: 17 YQAMDEAPIGITIADPAKLDDPLIYVNDGFCELTGYPRDEILGQNCRFLQGENTREEPVA 76
Query: 304 QVSIAIS 310
++ AI
Sbjct: 77 KMRAAIE 83
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 25 DELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIRE 84
+E + ITDP + I + + F ++G++ AE GRN R+ + + + E+ E
Sbjct: 146 EEAERAILITDPEGT---IEYVNPAFEHLTGYTAAEARGRNPRILKSGQQDELFYRELWE 202
Query: 85 AIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
I E E L N K G F + K+ + DG THFVA++ I +
Sbjct: 203 TITAEEVWEAELTNRTKHGEIFEVKQKI-VPITDSDGDITHFVAIEQDITEK 253
>gi|334121164|ref|ZP_08495238.1| PAS/PAC sensor signal transduction histidine kinase [Microcoleus
vaginatus FGP-2]
gi|333455450|gb|EGK84099.1| PAS/PAC sensor signal transduction histidine kinase [Microcoleus
vaginatus FGP-2]
Length = 1113
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 67/120 (55%), Gaps = 1/120 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL + I D + PIV+ + F +++G+ R+EIIG+N R QGP T+ + +I
Sbjct: 34 ALAATSNGIAIADATRPDKPIVYCNGAFERITGYDRSEIIGQNCRFLQGPDTDGAAVDQI 93
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R A++E+ +V L NY+KDGTPFW +S V G THF+ VQ I RK +
Sbjct: 94 RVALKEQHDCKVVLKNYRKDGTPFWNELTISPVR-DSSGIVTHFIGVQADITDRKQAEEA 152
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
+L + D PD P+VY + AF ++TGYDR+E++GQNCRFL G DTD + Q+
Sbjct: 34 ALAATSNGIAIADATRPDKPIVYCNGAFERITGYDRSEIIGQNCRFLQGPDTDGAAVDQI 93
Query: 306 SIAISPYPKKKSIYMEY 322
+A+ K + Y
Sbjct: 94 RVALKEQHDCKVVLKNY 110
>gi|120612211|ref|YP_971889.1| histidine kinase [Acidovorax citrulli AAC00-1]
gi|120590675|gb|ABM34115.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax citrulli
AAC00-1]
Length = 544
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 64/105 (60%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP +PIVF +R F+ M+G+ +I+G N R QGP T+R T+ +REAI + R I
Sbjct: 45 VTDPRQPDNPIVFCNRAFVAMTGYQPQDILGHNCRFLQGPATDRNTVAALREAIDQRREI 104
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+ LLNY+KDG+ FW +S V+ G +F A Q+ + R+
Sbjct: 105 SLELLNYRKDGSTFWNALFISPVYNAR-GELVYFFASQLDVSRRR 148
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP PD P+V+ + AF+ +TGY +++G NCRFL G TD +
Sbjct: 32 FFAAIETTRMPMLVTDPRQPDNPIVFCNRAFVAMTGYQPQDILGHNCRFLQGPATDRNTV 91
Query: 303 YQVSIAISPYPKKKSIYMEYV 323
+ AI +++ I +E +
Sbjct: 92 AALREAID---QRREISLELL 109
>gi|237757476|gb|ACR16779.1| FMN-based fluorescent protein CaFbFP [synthetic construct]
Length = 278
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +ALD + ITDP++ +PIV+ ++GF++M+G+ EI+G+N R QG T+ +
Sbjct: 16 IKKALDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNARFLQGKHTDPAEV 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
IR A++ + P+ V + NYKKDGT FW + + E T+FV +Q I +K
Sbjct: 76 DNIRTALQNKEPVTVQIQNYKKDGTMFWNELNIDPM---EIEDKTYFVGIQNDITKQKE 131
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +ALD + ITDP++ +PIV+ ++GF++M+G+ EI+G+N R QG T+ +
Sbjct: 155 IKKALDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNARFLQGKHTDPAEV 214
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
IR A++ + P+ V + NYKKDGT FW + + E T+FV +Q I +K
Sbjct: 215 DNIRTALQNKEPVTVQIQNYKKDGTMFWNELNIDPM---EIEDKTYFVGIQNDITKQKE 270
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 4/121 (3%)
Query: 191 EDSCEASDLEKRKAATAIDNILSVLTHYSQLTGR-LVCGKRCSLPGMGFISSSLYISLGR 249
E + + ++E + I N ++ Y +L + + +PG + +L
Sbjct: 105 ELNIDPMEIEDKTYFVGIQNDITKQKEYEKLLELGMASFQSFGIPGQLEVIKK---ALDH 161
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
++ V+ DP L D P+VY + F+++TGY+ E++G+N RFL G TD + + A+
Sbjct: 162 VRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNARFLQGKHTDPAEVDNIRTAL 221
Query: 310 S 310
Sbjct: 222 Q 222
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
+L ++ V+ DP L D P+VY + F+++TGY+ E++G+N RFL G TD + +
Sbjct: 19 ALDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNARFLQGKHTDPAEVDNI 78
Query: 306 SIAIS 310
A+
Sbjct: 79 RTALQ 83
>gi|384418859|ref|YP_005628219.1| two-component system sensor-response regulator hybrid protein
[Xanthomonas oryzae pv. oryzicola BLS256]
gi|353461772|gb|AEQ96051.1| two-component system sensor-response regulator hybrid protein
[Xanthomonas oryzae pv. oryzicola BLS256]
Length = 502
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
T+TDP + +PIVFA+R FL+M+G+S E+IG N R QGP T+ +I ++R++I
Sbjct: 3 MTVTDPHLPDNPIVFANRAFLEMTGYSAEEVIGNNCRFLQGPETDPASISDVRQSIETRS 62
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S VF + G +F Q+ + R+ ++
Sbjct: 63 EFATEVLNYRKDGSSFWNALFVSPVF-DDQGNLVYFFGSQLDVSRRRDAEDA 113
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ DPHLPD P+V+A+ AFL++TGY EV+G NCRFL G +TD + V +I
Sbjct: 3 MTVTDPHLPDNPIVFANRAFLEMTGYSAEEVIGNNCRFLQGPETDPASISDVRQSI 58
>gi|194017797|ref|ZP_03056406.1| YtvA [Bacillus pumilus ATCC 7061]
gi|194010449|gb|EDW20022.1| YtvA [Bacillus pumilus ATCC 7061]
Length = 267
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 68/119 (57%), Gaps = 1/119 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +ALD ITDPS+ +PIV+ + GF M+G+ EI+GRN R QG T+++ +
Sbjct: 16 IKKALDHARIGVVITDPSLEDNPIVYVNHGFTHMTGYKPDEILGRNCRFLQGKDTDQKQL 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
IR I+ + PI L NYKKDGT FW + ++ ++D + T F+ Q I +K
Sbjct: 76 DLIRHGIQNKTPITTQLKNYKKDGTFFWNELNIDPLYIEQDDK-TFFIGFQKDITKQKE 133
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 35/57 (61%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+L + V+ DP L D P+VY + F +TGY +E++G+NCRFL G DTD L
Sbjct: 19 ALDHARIGVVITDPSLEDNPIVYVNHGFTHMTGYKPDEILGRNCRFLQGKDTDQKQL 75
>gi|333899393|ref|YP_004473266.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas fulva 12-X]
gi|333114658|gb|AEF21172.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas fulva 12-X]
Length = 534
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 67/105 (63%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PI+FA+ FL+M+G+ EI+G+N R QG T+R + ++REAI + + +
Sbjct: 40 VTDPNRPDNPIIFANNAFLEMTGYESEEIVGQNCRFLQGAETDRSVVAQVREAISKRQEV 99
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
V L+NY+KDG+ FW +S V+ + G +F A Q+ I R+
Sbjct: 100 SVELINYRKDGSTFWNALFISPVY-NDAGELIYFFASQLDISRRR 143
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 56/81 (69%), Gaps = 3/81 (3%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP+ PD P+++A++AFL++TGY+ E+VGQNCRFL G +TD +V+
Sbjct: 27 FFAAVETTRMPMIVTDPNRPDNPIIFANNAFLEMTGYESEEIVGQNCRFLQGAETDRSVV 86
Query: 303 YQVSIAISPYPKKKSIYMEYV 323
QV AIS K++ + +E +
Sbjct: 87 AQVREAIS---KRQEVSVELI 104
>gi|299008122|gb|ADJ00051.1| Evoglow [Promoter probe vector pEvoGlowRed]
gi|299008129|gb|ADJ00057.1| Evoglow [Mariner mini-transposon delivery vector pMaGlowRedKm]
gi|299008135|gb|ADJ00062.1| Evoglow [Mariner mini-transposon delivery vector pMaTcGlow]
gi|299008142|gb|ADJ00067.1| Evoglow [Mariner mini-transposon delivery vector pMaGlow]
gi|299008157|gb|ADJ00079.1| Evoglow [Reporter vector pGlowRed]
Length = 143
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +ALD + ITDP++ +PIV+ ++GF++M+G+ EI+G+N R QG T+ +
Sbjct: 16 IKKALDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNARFLQGKHTDPAEV 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
IR A++ + P+ V + NYKKDGT FW + + E T+FV +Q I +K
Sbjct: 76 DNIRTALQNKEPVTVQIQNYKKDGTMFWNELNIDPM---EIEDKTYFVGIQNDITKQKE 131
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
+L ++ V+ DP L D P+VY + F+++TGY+ E++G+N RFL G TD + +
Sbjct: 19 ALDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNARFLQGKHTDPAEVDNI 78
Query: 306 SIAIS 310
A+
Sbjct: 79 RTALQ 83
>gi|126023750|gb|ABN71355.1| FMN-based fluorescence protein [synthetic construct]
gi|238480383|gb|ACR43777.1| FMN-based fluorescent protein CaFbFP [synthetic construct]
Length = 137
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +ALD + ITDP++ +PIV+ ++GF++M+G+ EI+G+N R QG T+ +
Sbjct: 16 IKKALDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNARFLQGKHTDPAEV 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
IR A++ + P+ V + NYKKDGT FW + + E T+FV +Q I +K
Sbjct: 76 DNIRTALQNKEPVTVQIQNYKKDGTMFWNELNIDPM---EIEDKTYFVGIQNDITKQKE 131
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
+L ++ V+ DP L D P+VY + F+++TGY+ E++G+N RFL G TD + +
Sbjct: 19 ALDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNARFLQGKHTDPAEVDNI 78
Query: 306 SIAIS 310
A+
Sbjct: 79 RTALQ 83
>gi|388578800|gb|EIM19136.1| hypothetical protein WALSEDRAFT_10239, partial [Wallemia sebi CBS
633.66]
Length = 106
Score = 91.7 bits (226), Expect = 5e-16, Method: Composition-based stats.
Identities = 45/107 (42%), Positives = 64/107 (59%), Gaps = 1/107 (0%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L D+F IT+P + HPIV AS GF K++G+ + IIGRN R QGP T +++ IR+A+
Sbjct: 1 LSDAFVITNPRLRDHPIVMASDGFSKVTGYHHSTIIGRNCRFLQGPGTAPQSVQRIRDAL 60
Query: 87 REERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
I LLNY+ DGTPF+ L M + G+ +F+ QV +
Sbjct: 61 NNGVSITELLLNYRADGTPFFCLLNM-IPLHDSQGKIAYFIGGQVNV 106
Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 33/48 (68%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDT 297
+ +FV+ +P L D P+V ASD F K+TGY + ++G+NCRFL G T
Sbjct: 1 LSDAFVITNPRLRDHPIVMASDGFSKVTGYHHSTIIGRNCRFLQGPGT 48
>gi|452856665|ref|YP_007498348.1| blue light GTP-binding receptor [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
gi|452080925|emb|CCP22692.1| blue light GTP-binding receptor [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
Length = 261
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 71/119 (59%), Gaps = 3/119 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +ALD ITDPS+ +PI++ ++GF+ M+G+S EI+G+N R Q T+R+ +
Sbjct: 16 IKKALDHARIGVVITDPSLEDNPIIYTNQGFMDMTGYSSEEILGKNCRFLQSKETDRQQV 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
+IR+++ ++ I V L N KKDGTPFW + ++ ++ +FV Q I +K
Sbjct: 76 AKIRKSLNQKEKITVRLKNIKKDGTPFWNELNIDPLYVED---KLYFVGFQKDITEQKE 131
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+L + V+ DP L D P++Y + F+ +TGY E++G+NCRFL +TD
Sbjct: 19 ALDHARIGVVITDPSLEDNPIIYTNQGFMDMTGYSSEEILGKNCRFLQSKETD 71
>gi|444310002|ref|ZP_21145630.1| signal transduction histidine kinase [Ochrobactrum intermedium M86]
gi|443486649|gb|ELT49423.1| signal transduction histidine kinase [Ochrobactrum intermedium M86]
Length = 491
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+ P IT+P + +PIVFA++ F ++G+ EIIG+N R QGP T+ + + I
Sbjct: 26 AVQLTPMPMLITNPRLPDNPIVFANKAFQNLTGYEADEIIGKNCRFLQGPGTDPKHVEMI 85
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
R AI E+ I++++LNYKK G PFW +S V E G HFV+ Q+ +
Sbjct: 86 RAAIETEQSIDIDILNYKKSGEPFWNRLHISPV-KTEAGELHHFVSSQLDVT 136
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 38/56 (67%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
++ +P LPD P+V+A+ AF LTGY+ +E++G+NCRFL G TD + + AI
Sbjct: 34 MLITNPRLPDNPIVFANKAFQNLTGYEADEIIGKNCRFLQGPGTDPKHVEMIRAAI 89
>gi|429506317|ref|YP_007187501.1| sensory transduction histidine kinase [Bacillus amyloliquefaciens
subsp. plantarum AS43.3]
gi|429487907|gb|AFZ91831.1| sensory transduction histidine kinase [Bacillus amyloliquefaciens
subsp. plantarum AS43.3]
Length = 261
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 71/119 (59%), Gaps = 3/119 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +ALD ITDPS+ +PI++ ++GF+ M+G+S EI+G+N R Q T+R+ +
Sbjct: 16 IKKALDHARIGVVITDPSLEDNPIIYTNQGFMDMTGYSSEEILGKNCRFLQSKETDRQQV 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
+IR+++ ++ I V L N KKDGTPFW + ++ ++ +FV Q I +K
Sbjct: 76 AKIRKSLNQKEKITVRLKNVKKDGTPFWNELNIDPLYVED---KLYFVGFQKDITEQKE 131
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+L + V+ DP L D P++Y + F+ +TGY E++G+NCRFL +TD
Sbjct: 19 ALDHARIGVVITDPSLEDNPIIYTNQGFMDMTGYSSEEILGKNCRFLQSKETD 71
>gi|239833953|ref|ZP_04682281.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG
3301]
gi|239822016|gb|EEQ93585.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG
3301]
Length = 495
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+ P IT+P + +PIVFA++ F ++G+ EIIG+N R QGP T+ + + I
Sbjct: 30 AVQLTPMPMLITNPRLPDNPIVFANKAFQNLTGYEADEIIGKNCRFLQGPGTDPKHVEMI 89
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
R AI E+ I++++LNYKK G PFW +S V E G HFV+ Q+ +
Sbjct: 90 RAAIETEQSIDIDILNYKKSGEPFWNRLHISPV-KTEAGELHHFVSSQLDVT 140
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 38/56 (67%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
++ +P LPD P+V+A+ AF LTGY+ +E++G+NCRFL G TD + + AI
Sbjct: 38 MLITNPRLPDNPIVFANKAFQNLTGYEADEIIGKNCRFLQGPGTDPKHVEMIRAAI 93
>gi|384266573|ref|YP_005422280.1| Blue-light photoreceptor [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|387899625|ref|YP_006329921.1| sensory transduction histidine kinase [Bacillus amyloliquefaciens
Y2]
gi|380499926|emb|CCG50964.1| Blue-light photoreceptor [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|387173735|gb|AFJ63196.1| sensory transduction histidine kinase [Bacillus amyloliquefaciens
Y2]
Length = 276
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 71/119 (59%), Gaps = 3/119 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +ALD ITDPS+ +PI++ ++GF+ M+G+S EI+G+N R Q T+R+ +
Sbjct: 31 IKKALDHARIGVVITDPSLEDNPIIYTNQGFMDMTGYSSEEILGKNCRFLQSKETDRQQV 90
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
+IR+++ ++ I V L N KKDGTPFW + ++ ++ +FV Q I +K
Sbjct: 91 AKIRKSLNQKEKITVRLKNVKKDGTPFWNELNIDPLYVED---KLYFVGFQKDITEQKE 146
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 30/44 (68%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
V+ DP L D P++Y + F+ +TGY E++G+NCRFL +TD
Sbjct: 43 VITDPSLEDNPIIYTNQGFMDMTGYSSEEILGKNCRFLQSKETD 86
>gi|407977776|ref|ZP_11158612.1| hypothetical protein BA1_01205 [Bacillus sp. HYC-10]
gi|407415638|gb|EKF37226.1| hypothetical protein BA1_01205 [Bacillus sp. HYC-10]
Length = 262
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 73/132 (55%), Gaps = 1/132 (0%)
Query: 10 QSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMF 69
+S+ + + EALD T+TDPS+ +P+++ ++GFL M+G+ E++G+N R
Sbjct: 4 ESYKSENLHLIKEALDYTQVGLTVTDPSLPDNPLIYVNKGFLDMTGYQETEVLGKNCRFL 63
Query: 70 QGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMS-LVFGKEDGRATHFVA 128
QG T + + ++R AI + + V L NYKK G FW ++ L + +G+ +FV
Sbjct: 64 QGDETEQIVLKQMRAAIENKEAVTVQLKNYKKSGQMFWNELSVAPLWIDENEGKRLYFVG 123
Query: 129 VQVPIVSRKHMR 140
+Q + K +
Sbjct: 124 LQKDVTKEKEQQ 135
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 37/56 (66%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ DP LPD P++Y + FL +TGY EV+G+NCRFL G +T+ VL Q+ AI
Sbjct: 25 LTVTDPSLPDNPLIYVNKGFLDMTGYQETEVLGKNCRFLQGDETEQIVLKQMRAAI 80
>gi|384176619|ref|YP_005558004.1| sensory box protein [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
gi|349595843|gb|AEP92030.1| sensory box protein [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
Length = 261
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +ALD + ITDP++ +PIV+ ++GF++M+G+ EI+G+N R QG T+ +
Sbjct: 16 IKKALDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEV 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
IR A++ + P+ V + NYKKDGT FW + + E T+FV +Q I +K
Sbjct: 76 DNIRTALQNKEPVTVQIQNYKKDGTMFWNELNIDPM---EIEDKTYFVGIQKDITKQKE 131
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 36/53 (67%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+L ++ V+ DP L D P+VY + F+++TGY+ E++G+NCRFL G TD
Sbjct: 19 ALDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTD 71
>gi|385265922|ref|ZP_10044009.1| PAS fold protein [Bacillus sp. 5B6]
gi|385150418|gb|EIF14355.1| PAS fold protein [Bacillus sp. 5B6]
Length = 261
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 71/119 (59%), Gaps = 3/119 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +ALD ITDPS+ +PI++ ++GF+ M+G+S EI+G+N R Q T+R+ +
Sbjct: 16 IKKALDHARIGVVITDPSLEDNPIIYTNQGFMDMTGYSSEEILGKNCRFLQSKETDRQEV 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
+IR+++ ++ I V L N KKDGTPFW + ++ ++ +FV Q I +K
Sbjct: 76 AKIRKSLNQKEKITVRLKNVKKDGTPFWNELNIDPLYVED---KLYFVGFQKDITEQKE 131
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+L + V+ DP L D P++Y + F+ +TGY E++G+NCRFL +TD
Sbjct: 19 ALDHARIGVVITDPSLEDNPIIYTNQGFMDMTGYSSEEILGKNCRFLQSKETD 71
>gi|333894329|ref|YP_004468204.1| multi-sensor hybrid histidine kinase [Alteromonas sp. SN2]
gi|332994347|gb|AEF04402.1| multi-sensor hybrid histidine kinase [Alteromonas sp. SN2]
Length = 956
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 68/119 (57%), Gaps = 2/119 (1%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
++ A+DE S I D +G PI++ + F +++G+++ +IIGRN R QG T+ T
Sbjct: 440 LNHAMDEATVSIVIADIKRTGQPIIYVNNAFNRLTGYNKEDIIGRNCRFMQGEGTDSNTT 499
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
IR AI + PIE +LNY+KDG F+ K+ L K DG TH++ Q + ++
Sbjct: 500 ALIRSAIAKREPIETTILNYRKDGASFYN--KLILTPVKSDGEVTHYIGFQQDVTQQRQ 556
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 40/58 (68%), Gaps = 2/58 (3%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLN--GVDTDTTVLYQVSIA 308
S V+ D P++Y ++AF +LTGY++ +++G+NCRF+ G D++TT L + +IA
Sbjct: 450 SIVIADIKRTGQPIIYVNNAFNRLTGYNKEDIIGRNCRFMQGEGTDSNTTALIRSAIA 507
>gi|16080086|ref|NP_390912.1| blue light GTP-binding receptor [Bacillus subtilis subsp. subtilis
str. 168]
gi|221310973|ref|ZP_03592820.1| hypothetical protein Bsubs1_16521 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221315300|ref|ZP_03597105.1| hypothetical protein BsubsN3_16427 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221320217|ref|ZP_03601511.1| hypothetical protein BsubsJ_16348 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221324499|ref|ZP_03605793.1| hypothetical protein BsubsS_16497 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|402777188|ref|YP_006631132.1| blue light GTP-binding receptor [Bacillus subtilis QB928]
gi|452915728|ref|ZP_21964354.1| blue-light photoreceptor [Bacillus subtilis MB73/2]
gi|20138874|sp|O34627.1|PHOT_BACSU RecName: Full=Blue-light photoreceptor; AltName: Full=Photoactive
flavo-yellow protein; AltName: Full=Phototropin homolog
gi|2293304|gb|AAC00382.1| putative protein kinase [Bacillus subtilis]
gi|2635518|emb|CAB15012.1| blue light GTP-binding receptor [Bacillus subtilis subsp. subtilis
str. 168]
gi|402482367|gb|AFQ58876.1| Blue light GTP-binding receptor [Bacillus subtilis QB928]
gi|407961044|dbj|BAM54284.1| blue light GTP-binding receptor [Synechocystis sp. PCC 6803]
gi|407965874|dbj|BAM59113.1| blue light GTP-binding receptor [Bacillus subtilis BEST7003]
gi|452116076|gb|EME06472.1| blue-light photoreceptor [Bacillus subtilis MB73/2]
Length = 261
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +ALD + ITDP++ +PIV+ ++GF++M+G+ EI+G+N R QG T+ +
Sbjct: 16 IKKALDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEV 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
IR A++ + P+ V + NYKKDGT FW + + E T+FV +Q I +K
Sbjct: 76 DNIRTALQNKEPVTVQIQNYKKDGTMFWNELNIDPM---EIEDKTYFVGIQNDITKQKE 131
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 36/53 (67%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+L ++ V+ DP L D P+VY + F+++TGY+ E++G+NCRFL G TD
Sbjct: 19 ALDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTD 71
>gi|404253790|ref|ZP_10957758.1| histidine kinase [Sphingomonas sp. PAMC 26621]
Length = 536
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
+TDP +P++F + F M+G+S AEIIG N R QGP T+R ++ ++R AI E +
Sbjct: 48 MVVTDPHQPDNPVIFCNEAFRHMTGYSDAEIIGINCRFLQGPETDRDSVAQVRRAIAERQ 107
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+ V +LNY+K+G+ FW +S VF E G+ +F A Q+ + R+ +
Sbjct: 108 EVSVEILNYRKNGSTFWNALFISPVF-DEAGKLIYFFASQLDVSRRREAEEA 158
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S + ++ + V+ DPH PD P+++ ++AF +TGY E++G NCRFL G +TD
Sbjct: 34 SDIFFAAVKTTRMPMVVTDPHQPDNPVIFCNEAFRHMTGYSDAEIIGINCRFLQGPETDR 93
Query: 300 TVLYQVSIAIS 310
+ QV AI+
Sbjct: 94 DSVAQVRRAIA 104
>gi|448689879|ref|ZP_21695463.1| HTR-like protein [Haloarcula japonica DSM 6131]
gi|445778150|gb|EMA29110.1| HTR-like protein [Haloarcula japonica DSM 6131]
Length = 599
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+D+ P TITDP +PIV+ + F +++G+SR ++GRN R QG T I E+
Sbjct: 278 AMDQTPIGITITDPQQPDNPIVYVNDSFTELTGYSRESVLGRNCRFLQGEATRDEPIAEL 337
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
AI E P+ V L NY+++G FW ++ +DG HFV Q + +R+ +
Sbjct: 338 ASAIEAEEPVSVELRNYREEGELFWNRVTVA-PLTDDDGEVEHFVGFQEDVTARREL 393
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
+ DP PD P+VY +D+F +LTGY R V+G+NCRFL G T + +++ AI
Sbjct: 286 ITITDPQQPDNPIVYVNDSFTELTGYSRESVLGRNCRFLQGEATRDEPIAELASAIE 342
>gi|148252462|ref|YP_001237047.1| histidine kinase [Bradyrhizobium sp. BTAi1]
gi|146404635|gb|ABQ33141.1| putative sensor histidine kinase with PAS/PAC and Response
regulator receiver domains [Bradyrhizobium sp. BTAi1]
Length = 534
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 69/116 (59%), Gaps = 2/116 (1%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP S +PI+FA+R FL+M+G+ EI+G N R QGP T++ TI IR AI R I
Sbjct: 42 VTDPRQSDNPILFANRAFLEMTGYELNEIVGTNCRFLQGPDTDQETIAAIRSAIASRRDI 101
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSE 148
V +LNY+K+G FW +S V+ + G +F Q+ VSR+ S + S+
Sbjct: 102 AVEILNYRKNGAAFWNALFISPVYNRA-GELVYFFGSQLD-VSRRRDAESALVQSQ 155
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 43/68 (63%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP D P+++A+ AFL++TGY+ NE+VG NCRFL G DTD +
Sbjct: 29 FFAAVETTRMPMIVTDPRQSDNPILFANRAFLEMTGYELNEIVGTNCRFLQGPDTDQETI 88
Query: 303 YQVSIAIS 310
+ AI+
Sbjct: 89 AAIRSAIA 96
>gi|365887921|ref|ZP_09426733.1| putative sensor histidine kinase with PAS/PAC and Response
regulator receiver domains [Bradyrhizobium sp. STM 3809]
gi|365336463|emb|CCD99264.1| putative sensor histidine kinase with PAS/PAC and Response
regulator receiver domains [Bradyrhizobium sp. STM 3809]
Length = 534
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 71/116 (61%), Gaps = 2/116 (1%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP + +PI+FA+R FL+M+G+ +EI+G N R QGP T+R TI +R AI + I
Sbjct: 42 VTDPRQNDNPILFANRAFLEMTGYDLSEIVGANCRFLQGPDTDRDTIDAVRTAIANRQDI 101
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSE 148
V +LNY+K+G FW +S V+ + DG +F Q+ VSR+ S + S+
Sbjct: 102 AVEILNYRKNGAAFWNALFISPVYNR-DGELVYFFGSQLD-VSRRRDAESALVQSQ 155
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 43/68 (63%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP D P+++A+ AFL++TGYD +E+VG NCRFL G DTD +
Sbjct: 29 FFAAVETTRMPMIVTDPRQNDNPILFANRAFLEMTGYDLSEIVGANCRFLQGPDTDRDTI 88
Query: 303 YQVSIAIS 310
V AI+
Sbjct: 89 DAVRTAIA 96
>gi|428280513|ref|YP_005562248.1| hypothetical protein BSNT_04421 [Bacillus subtilis subsp. natto
BEST195]
gi|291485470|dbj|BAI86545.1| hypothetical protein BSNT_04421 [Bacillus subtilis subsp. natto
BEST195]
Length = 261
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +ALD + ITDP++ +PIV+ ++GF++M+G+ EI+G+N R QG T+ +
Sbjct: 16 IKKALDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEV 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
IR A++ + P+ V + NYKKDGT FW + + E T+FV +Q I +K
Sbjct: 76 DNIRTALQNKEPVTVQIQNYKKDGTMFWNELNIDPM---EIEDKTYFVGIQKDITKQKE 131
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 36/53 (67%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+L ++ V+ DP L D P+VY + F+++TGY+ E++G+NCRFL G TD
Sbjct: 19 ALDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTD 71
>gi|341613667|ref|ZP_08700536.1| hypothetical protein CJLT1_01890 [Citromicrobium sp. JLT1363]
Length = 358
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 70/122 (57%), Gaps = 1/122 (0%)
Query: 9 EQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM 68
E F++ + +A+ + + ++DP PIVFA+R F +++G+ EI+GRN R
Sbjct: 30 EDRFSDSSGVLFEQAMAQTRMAVCLSDPHQPDQPIVFANRAFRRLTGYEEEEILGRNCRF 89
Query: 69 FQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVA 128
QG +T+R + +REAI E + + LLNY+KDGTPFW + ++ +G+ +F
Sbjct: 90 LQGAKTDRDAVARVREAIENEDVLVIELLNYRKDGTPFWNALHLGPIY-DSNGKLIYFFG 148
Query: 129 VQ 130
Q
Sbjct: 149 SQ 150
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 43/64 (67%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
++ + + + L DPH PD P+V+A+ AF +LTGY+ E++G+NCRFL G TD + +V
Sbjct: 44 AMAQTRMAVCLSDPHQPDQPIVFANRAFRRLTGYEEEEILGRNCRFLQGAKTDRDAVARV 103
Query: 306 SIAI 309
AI
Sbjct: 104 REAI 107
>gi|422617051|ref|ZP_16685755.1| histidine kinase [Pseudomonas syringae pv. japonica str. M301072]
gi|330897435|gb|EGH28854.1| histidine kinase [Pseudomonas syringae pv. japonica str. M301072]
Length = 534
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PI+FA++ FL+M+G++ EIIG N R QGP T+R + IR+A+ E I
Sbjct: 37 VTDPNRPDNPIIFANQAFLEMTGYASEEIIGSNCRFLQGPDTDRAAVQSIRDAVEERVDI 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+LNY+KDG+ FW +S V+ + G +F A Q+ I R+
Sbjct: 97 STEILNYRKDGSSFWNALFISPVY-NDAGDLIYFFASQLDISRRR 140
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP+ PD P+++A+ AFL++TGY E++G NCRFL G DTD +
Sbjct: 24 FFAAVETTRMPMIVTDPNRPDNPIIFANQAFLEMTGYASEEIIGSNCRFLQGPDTDRAAV 83
Query: 303 YQVSIAI 309
+ A+
Sbjct: 84 QSIRDAV 90
>gi|90420418|ref|ZP_01228325.1| sensory box histidine kinase, possible photoreceptor [Aurantimonas
manganoxydans SI85-9A1]
gi|90335146|gb|EAS48899.1| sensory box histidine kinase, possible photoreceptor [Aurantimonas
manganoxydans SI85-9A1]
Length = 389
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
ITDP +PI+FA++ F + G+ R EIIGRN R QGP T+ + +R+AI + P+
Sbjct: 52 ITDPRQPDNPIIFANKAFQDLIGYDRDEIIGRNCRFLQGPDTDPTEVDRLRQAIARKEPV 111
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSED 149
V L NY+KDG+ FW +S V G EDG F A Q+ + R + ED
Sbjct: 112 NVQLRNYRKDGSAFWNSLYVSPVRG-EDGDVQFFFASQLDMTERVEAEQALARQKED 167
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 42/60 (70%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
+ ++ DP PD P+++A+ AF L GYDR+E++G+NCRFL G DTD T + ++ AI+
Sbjct: 47 RMPMIITDPRQPDNPIIFANKAFQDLIGYDRDEIIGRNCRFLQGPDTDPTEVDRLRQAIA 106
>gi|323449211|gb|EGB05101.1| hypothetical protein AURANDRAFT_38723 [Aureococcus anophagefferens]
Length = 157
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 70/112 (62%), Gaps = 1/112 (0%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+AL +F ITDPS+ +PIVFAS GFL ++G+S ++GRN R QGPRT+ R + +
Sbjct: 46 KALQTAQQNFVITDPSLPDNPIVFASHGFLTLTGYSLESVLGRNCRFLQGPRTDPRAVAK 105
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
IR+A+ E V LLNY+ DG+ F+ F ++ + + G ++V VQ +
Sbjct: 106 IRKAVDEGYDTSVCLLNYRIDGSTFFNQFFVAPLRDGQ-GNVVNYVGVQCQV 156
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 44/68 (64%)
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTV 301
SL +L +Q+FV+ DP LPD P+V+AS FL LTGY V+G+NCRFL G TD
Sbjct: 43 SLVKALQTAQQNFVITDPSLPDNPIVFASHGFLTLTGYSLESVLGRNCRFLQGPRTDPRA 102
Query: 302 LYQVSIAI 309
+ ++ A+
Sbjct: 103 VAKIRKAV 110
>gi|452752745|ref|ZP_21952485.1| Sensory box histidine kinase [alpha proteobacterium JLT2015]
gi|451959817|gb|EMD82233.1| Sensory box histidine kinase [alpha proteobacterium JLT2015]
Length = 345
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+ LP + TI++P I +P+V+ S F +++G+++ +GRN R QG T+ + I
Sbjct: 25 AISVLPFALTISNPRIDDNPLVYVSPAFCRITGYAKESCVGRNCRFLQGANTHPDAVAAI 84
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
RE I +ER + V+LLNY+ DGT FW ++ +F +DG +F+ +Q
Sbjct: 85 REGIEKEREVNVDLLNYRADGTEFWNRLLLAPLF-DDDGELAYFMGIQ 131
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDT 297
+ + +P + D P+VY S AF ++TGY + VG+NCRFL G +T
Sbjct: 32 ALTISNPRIDDNPLVYVSPAFCRITGYAKESCVGRNCRFLQGANT 76
>gi|188577558|ref|YP_001914487.1| histidine kinase [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188522010|gb|ACD59955.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 507
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
T+TDP + +PIVFA+R FL+M+G+S E+IG N R QGP T+ +I ++R++I
Sbjct: 8 MTVTDPHLPDNPIVFANRAFLEMTGYSAEEVIGNNCRFLQGPETDPASISDVRQSIETRS 67
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S VF + G +F Q+ + R+ ++
Sbjct: 68 EFATEVLNYRKDGSSFWNALFVSPVF-DDHGNLVYFFGSQLDVSRRRDAEDA 118
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ DPHLPD P+V+A+ AFL++TGY EV+G NCRFL G +TD + V +I
Sbjct: 8 MTVTDPHLPDNPIVFANRAFLEMTGYSAEEVIGNNCRFLQGPETDPASISDVRQSI 63
>gi|418031775|ref|ZP_12670258.1| blue light GTP-binding receptor [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|351470638|gb|EHA30759.1| blue light GTP-binding receptor [Bacillus subtilis subsp. subtilis
str. SC-8]
Length = 261
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +ALD + ITDP++ +PI++ ++GF++M+G+ EI+G+N R QG T+ +
Sbjct: 16 IKKALDHVRVGVVITDPALEDNPIIYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEV 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
IR A++ + P+ V + NYKKDGT FW + + E T+FV +Q I +K
Sbjct: 76 DNIRTALQNKEPVTVQIQNYKKDGTMFWNELNIDPM---EIEDKTYFVGIQKDITKQKE 131
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 36/53 (67%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+L ++ V+ DP L D P++Y + F+++TGY+ E++G+NCRFL G TD
Sbjct: 19 ALDHVRVGVVITDPALEDNPIIYVNQGFVQMTGYETEEILGKNCRFLQGKHTD 71
>gi|387893379|ref|YP_006323676.1| blue-light-activated histidine kinase [Pseudomonas fluorescens
A506]
gi|387160886|gb|AFJ56085.1| blue-light-activated histidine kinase [Pseudomonas fluorescens
A506]
Length = 525
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 70/109 (64%), Gaps = 2/109 (1%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+ +TDP+ +PI+FA++ FL ++GF E+IGRN R QGP+T++ + +++ A+ +
Sbjct: 35 AMIVTDPAGPDNPIIFANQAFLTLTGFELDEVIGRNCRFLQGPQTDKNALHQVQRAVEQH 94
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
V +LNY+KDG+ FW +S +F E G+ +F A Q+ VSR+H
Sbjct: 95 HEACVEVLNYRKDGSTFWNELFISPLF-NERGQLVYFFASQLD-VSRRH 141
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 42/60 (70%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPY 312
+ ++ DP PD P+++A+ AFL LTG++ +EV+G+NCRFL G TD L+QV A+ +
Sbjct: 35 AMIVTDPAGPDNPIIFANQAFLTLTGFELDEVIGRNCRFLQGPQTDKNALHQVQRAVEQH 94
>gi|452207589|ref|YP_007487711.1| sensor box histidine kinase [Natronomonas moolapensis 8.8.11]
gi|452083689|emb|CCQ37003.1| sensor box histidine kinase [Natronomonas moolapensis 8.8.11]
Length = 583
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 70/130 (53%), Gaps = 1/130 (0%)
Query: 8 IEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGR 67
I QS + T A+D+ P T+ D ++ P+++ + GF+ M+G+SR E +GRN R
Sbjct: 107 ISQSDRDTATTLGGTAIDQAPVGITVVDVTLDHEPLIYINDGFIDMTGYSRNEALGRNCR 166
Query: 68 MFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFV 127
QG T + +R AI E+P+ V L NY+KDGT FW ++S V DG T ++
Sbjct: 167 FLQGEETRDEPVARMRAAIDAEQPVTVELRNYRKDGTEFWNRIRLSPVENN-DGTVTRYL 225
Query: 128 AVQVPIVSRK 137
Q I K
Sbjct: 226 GFQENISEMK 235
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 30/44 (68%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDT 297
++D L P++Y +D F+ +TGY RNE +G+NCRFL G +T
Sbjct: 130 ITVVDVTLDHEPLIYINDGFIDMTGYSRNEALGRNCRFLQGEET 173
>gi|359785259|ref|ZP_09288412.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Halomonas sp. GFAJ-1]
gi|359297374|gb|EHK61609.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Halomonas sp. GFAJ-1]
Length = 874
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
I D S+ P+V+A++ F ++G+S+ ++IG N R QGP ++ + ++R I+E R +
Sbjct: 329 IADASLPDTPVVYANKAFTAITGYSQEDVIGHNCRFLQGPDSDPEVVAQLRRGIKERREV 388
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
V + NY++DGTPFW ++ V +E G+ THFV +Q I +K
Sbjct: 389 HVTICNYRQDGTPFWNDLYIAPVRDQE-GQVTHFVGIQHDISQQK 432
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 36/51 (70%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
++ D LPD P+VYA+ AF +TGY + +V+G NCRFL G D+D V+ Q+
Sbjct: 328 LIADASLPDTPVVYANKAFTAITGYSQEDVIGHNCRFLQGPDSDPEVVAQL 378
>gi|254414962|ref|ZP_05028725.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196178109|gb|EDX73110.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 1393
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 81/150 (54%), Gaps = 4/150 (2%)
Query: 9 EQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM 68
+QS N Y + A+ + ITDP+ +P+++ + F M+G++ E+IG N R
Sbjct: 572 QQSEANLYLM--QRAIAASNNGVIITDPNQPDNPVIYVNPAFESMTGYTAKEVIGHNCRF 629
Query: 69 FQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVA 128
+Q P N+ + ++ AI+E+R V L NY+KDG+ FW +S VF DG THFV
Sbjct: 630 WQEPDYNQAGVTKLATAIQEQRECHVILQNYRKDGSTFWNELYVSPVFDG-DGYLTHFVG 688
Query: 129 VQVPIVSRKHMRNSGMSYSEDGGGSRLREI 158
+Q I RK + + SE+ S LR +
Sbjct: 689 IQTDITKRKQAEEA-LRQSEEKLDSILRSL 717
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 15/116 (12%)
Query: 207 AIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPM 266
A+ N+L++ + Q L +R I++S ++ DP+ PD P+
Sbjct: 560 AVANVLALAIGHQQSEANLYLMQRA-------IAAS--------NNGVIITDPNQPDNPV 604
Query: 267 VYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYPKKKSIYMEY 322
+Y + AF +TGY EV+G NCRF D + + +++ AI + I Y
Sbjct: 605 IYVNPAFESMTGYTAKEVIGHNCRFWQEPDYNQAGVTKLATAIQEQRECHVILQNY 660
>gi|154687155|ref|YP_001422316.1| hypothetical protein RBAM_027270 [Bacillus amyloliquefaciens FZB42]
gi|394992734|ref|ZP_10385506.1| YtvA [Bacillus sp. 916]
gi|154353006|gb|ABS75085.1| YtvA [Bacillus amyloliquefaciens FZB42]
gi|393806394|gb|EJD67741.1| YtvA [Bacillus sp. 916]
Length = 261
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 71/119 (59%), Gaps = 3/119 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +ALD ITDPS+ +PI++ ++GF+ M+G+S EI+G+N R Q T+R+ +
Sbjct: 16 IKKALDHARIGVVITDPSLEDNPIIYTNQGFMDMTGYSSEEILGKNCRFLQSKETDRQQV 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
+IR+++ ++ I V L N KKDGTPFW + ++ ++ +FV Q I +K
Sbjct: 76 AKIRKSLTQKEKITVRLKNVKKDGTPFWNELNIDPLYVED---KLYFVGFQKDITEQKE 131
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+L + V+ DP L D P++Y + F+ +TGY E++G+NCRFL +TD
Sbjct: 19 ALDHARIGVVITDPSLEDNPIIYTNQGFMDMTGYSSEEILGKNCRFLQSKETD 71
>gi|393770521|ref|ZP_10359009.1| signal transduction histidine kinase [Methylobacterium sp. GXF4]
gi|392724065|gb|EIZ81442.1| signal transduction histidine kinase [Methylobacterium sp. GXF4]
Length = 489
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
ITDP + +PIV+ + F++++G++R EIIGRN R QGP T+ + + +R+AI
Sbjct: 35 MVITDPRLPDNPIVYVNDAFVRLTGYAREEIIGRNCRFLQGPETSLKDVARVRDAIERRV 94
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
IE++L N +KDGT FW +S VF DG T+F A Q + K
Sbjct: 95 TIEIDLKNRRKDGTVFWNRLLVSPVFAS-DGELTYFFASQYDVTLEKE 141
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 41/59 (69%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ V+ DP LPD P+VY +DAF++LTGY R E++G+NCRFL G +T + +V AI
Sbjct: 32 RMPMVITDPRLPDNPIVYVNDAFVRLTGYAREEIIGRNCRFLQGPETSLKDVARVRDAI 90
>gi|58582770|ref|YP_201786.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae KACC 10331]
Length = 428
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 65/107 (60%), Gaps = 1/107 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
T+TDP + +PIVFA+R FL+M+G+S E+IG N R QGP T+ +I ++R++I
Sbjct: 41 MTVTDPHLPDNPIVFANRAFLEMTGYSAEEVIGNNCRFLQGPETDPASISDVRQSIETRS 100
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+LNY+KDG+ FW +S VF + G +F Q+ + R+
Sbjct: 101 EFATEVLNYRKDGSSFWNALFVSPVF-DDHGNLVYFFGSQLDVSRRR 146
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 46/78 (58%)
Query: 232 SLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRF 291
SLP S + ++ + + DPHLPD P+V+A+ AFL++TGY EV+G NCRF
Sbjct: 19 SLPVEKHRSDIFFAAVETTRMPMTVTDPHLPDNPIVFANRAFLEMTGYSAEEVIGNNCRF 78
Query: 292 LNGVDTDTTVLYQVSIAI 309
L G +TD + V +I
Sbjct: 79 LQGPETDPASISDVRQSI 96
>gi|321312570|ref|YP_004204857.1| blue light GTP-binding receptor [Bacillus subtilis BSn5]
gi|320018844|gb|ADV93830.1| blue light GTP-binding receptor [Bacillus subtilis BSn5]
Length = 261
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +ALD + ITDP++ +PI++ ++GF++M+G+ EI+G+N R QG T+ +
Sbjct: 16 IKKALDHVRVGVVITDPALEDNPIIYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEV 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
IR A++ + P+ V + NYKKDGT FW + + E T+FV +Q I +K
Sbjct: 76 DNIRTALQNKEPVTVQIQNYKKDGTMFWNELNIDPM---EIEDKTYFVGIQKDITKQKE 131
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 36/53 (67%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+L ++ V+ DP L D P++Y + F+++TGY+ E++G+NCRFL G TD
Sbjct: 19 ALDHVRVGVVITDPALEDNPIIYVNQGFVQMTGYETEEILGKNCRFLQGKHTD 71
>gi|84624645|ref|YP_452017.1| histidine kinase [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|84368585|dbj|BAE69743.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae MAFF 311018]
Length = 540
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
T+TDP + +PIVFA+R FL+M+G+S E+IG N R QGP T+ +I ++R++I
Sbjct: 41 MTVTDPHLPDNPIVFANRAFLEMTGYSAEEVIGNNCRFLQGPETDPASISDVRQSIETRS 100
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S VF + G +F Q+ + R+ ++
Sbjct: 101 EFATEVLNYRKDGSSFWNALFVSPVF-DDHGNLVYFFGSQLDVSRRRDAEDA 151
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 46/78 (58%)
Query: 232 SLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRF 291
SLP S + ++ + + DPHLPD P+V+A+ AFL++TGY EV+G NCRF
Sbjct: 19 SLPVEKHRSDIFFAAVETTRMPMTVTDPHLPDNPIVFANRAFLEMTGYSAEEVIGNNCRF 78
Query: 292 LNGVDTDTTVLYQVSIAI 309
L G +TD + V +I
Sbjct: 79 LQGPETDPASISDVRQSI 96
>gi|443632380|ref|ZP_21116560.1| sensory box protein [Bacillus subtilis subsp. inaquosorum KCTC
13429]
gi|443348495|gb|ELS62552.1| sensory box protein [Bacillus subtilis subsp. inaquosorum KCTC
13429]
Length = 261
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 74/130 (56%), Gaps = 4/130 (3%)
Query: 10 QSFNNRYTLWV-HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM 68
QSF + L V +ALD ITDP++ +PIV+ ++GF++M+G+ EI+G+N R
Sbjct: 5 QSFGVQGQLEVIKKALDHARVGVVITDPALEDNPIVYVNQGFVQMTGYEAEEILGKNCRF 64
Query: 69 FQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVA 128
QG T+ + IR A++ + P+ V + NYKKDGT FW + + E T+FV
Sbjct: 65 LQGKHTDPAEVDNIRTALQNKEPVTVQIQNYKKDGTMFWNELNIDPL---EIEGKTYFVG 121
Query: 129 VQVPIVSRKH 138
+Q I +K
Sbjct: 122 IQKDITKQKE 131
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 35/53 (66%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+L + V+ DP L D P+VY + F+++TGY+ E++G+NCRFL G TD
Sbjct: 19 ALDHARVGVVITDPALEDNPIVYVNQGFVQMTGYEAEEILGKNCRFLQGKHTD 71
>gi|24899170|dbj|BAC23099.1| phototropin [Vicia faba]
Length = 970
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 70/117 (59%), Gaps = 1/117 (0%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R L + L+ + +F ITDP + +PI+FAS FL+++ +SR EI+G+N R QG T
Sbjct: 428 RKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGKNCRFLQGQET 487
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+ T+ +IREAI + + V L+NY K G FW LF + + + G +F+ VQ+
Sbjct: 488 DPATVRKIREAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDHK-GEVQYFIGVQL 543
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 69/123 (56%), Gaps = 3/123 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL +F ++D + +PI++AS GF KM+G++ E+IGRN R QG T+ +
Sbjct: 151 LKDALSAFQQTFVVSDATKPDYPILYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPNDV 210
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
IREA+ + LLNYKKDGTPFW L +S + +DG + + V + KH
Sbjct: 211 ARIREALEGGKSFCGRLLNYKKDGTPFWNLLTISPI-KDDDGNVLKLIGMLVEV--NKHT 267
Query: 140 RNS 142
S
Sbjct: 268 EGS 270
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 50/67 (74%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 433 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGKNCRFLQGQETDPATV 492
Query: 303 YQVSIAI 309
++ AI
Sbjct: 493 RKIREAI 499
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 46/75 (61%)
Query: 235 GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG 294
G +S L +L +Q+FV+ D PD P++YAS F K+TGY EV+G+NCRFL G
Sbjct: 143 GFPRVSDDLKDALSAFQQTFVVSDATKPDYPILYASAGFFKMTGYTSKEVIGRNCRFLQG 202
Query: 295 VDTDTTVLYQVSIAI 309
DTD + ++ A+
Sbjct: 203 ADTDPNDVARIREAL 217
>gi|447916567|ref|YP_007397135.1| histidine kinase [Pseudomonas poae RE*1-1-14]
gi|445200430|gb|AGE25639.1| histidine kinase [Pseudomonas poae RE*1-1-14]
Length = 524
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 82/137 (59%), Gaps = 3/137 (2%)
Query: 13 NNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGP 72
+NR L++ A+ + +TDP+ +PI+FA++ F+ ++GF + EIIGRN R QGP
Sbjct: 19 SNRKDLFL-AAMKASHSAMIVTDPAQHDNPIIFANQAFVDLTGFEQDEIIGRNCRFLQGP 77
Query: 73 RTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVP 132
T++ + + ++AI + V +LNY+KDG+ FW ++ +F E G+ +F A Q+
Sbjct: 78 ETDKCALAQAQQAIERHHEVCVEVLNYRKDGSTFWNEIFIAPLF-NEAGQLVYFFASQLD 136
Query: 133 IVSRKHMRNSGMSYSED 149
VSR+H + ++D
Sbjct: 137 -VSRRHDAEQRLRSAQD 152
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 40/57 (70%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ ++ DP D P+++A+ AF+ LTG++++E++G+NCRFL G +TD L Q AI
Sbjct: 35 AMIVTDPAQHDNPIIFANQAFVDLTGFEQDEIIGRNCRFLQGPETDKCALAQAQQAI 91
>gi|397642952|gb|EJK75561.1| hypothetical protein THAOC_02710 [Thalassiosira oceanica]
Length = 406
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 78/142 (54%), Gaps = 6/142 (4%)
Query: 1 MDSQLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAE 60
M S G ++ Y L AL +F I+DPS+ +PIV+ S+GFL ++G+S +
Sbjct: 258 MPSGFGPVKTLMEPDYRLM--SALSGSQQNFAISDPSLPDNPIVYVSQGFLDLTGYSLDQ 315
Query: 61 IIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED 120
++GRN R QGP T++ + IR + E V LLNYK DGTPFW F ++ + E+
Sbjct: 316 VLGRNCRFLQGPGTDQAAVDVIRRGVMEGTDTSVCLLNYKADGTPFWNQFFVAALRDAEN 375
Query: 121 GRATHFVAVQVPI---VSRKHM 139
+FV VQ + V KH+
Sbjct: 376 N-VVNFVGVQCEVSKAVVEKHI 396
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 39/60 (65%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L +Q+F + DP LPD P+VY S FL LTGY ++V+G+NCRFL G TD +
Sbjct: 275 LMSALSGSQQNFAISDPSLPDNPIVYVSQGFLDLTGYSLDQVLGRNCRFLQGPGTDQAAV 334
>gi|149186049|ref|ZP_01864363.1| sensory box histidine kinase [Erythrobacter sp. SD-21]
gi|148830080|gb|EDL48517.1| sensory box histidine kinase [Erythrobacter sp. SD-21]
Length = 359
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 69/120 (57%), Gaps = 1/120 (0%)
Query: 11 SFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQ 70
SF L +A+ + + +TDP PIVF + F +++G+ R +I+GRN R Q
Sbjct: 30 SFEGASGLLFEQAMAQTRMAVCLTDPHQQDDPIVFCNEAFEQLTGYRREDILGRNCRFLQ 89
Query: 71 GPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
GP T++R I +IREAI E + V LLNY+KDG+ F+ + ++ E GR T+F Q
Sbjct: 90 GPDTDQRQIAKIREAIAAEEVVVVELLNYRKDGSTFYNTLHLGPIYDAE-GRLTYFFGSQ 148
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 44/65 (67%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
++ + + + L DPH D P+V+ ++AF +LTGY R +++G+NCRFL G DTD + ++
Sbjct: 42 AMAQTRMAVCLTDPHQQDDPIVFCNEAFEQLTGYRREDILGRNCRFLQGPDTDQRQIAKI 101
Query: 306 SIAIS 310
AI+
Sbjct: 102 REAIA 106
>gi|253750644|gb|ACT35018.1| phytochrome 3 [Plagiogyria distinctissima]
Length = 1435
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + SF ITDP + +PI+FAS FL+++ +SR +++G N R QG T+ + + IR
Sbjct: 931 LERIGHSFVITDPRLPDNPIIFASDQFLELTEYSREDVLGENCRFLQGRDTDLKAVQLIR 990
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
+A++E + V+LLNY + G PFW LF + + K+ G +F+ VQ
Sbjct: 991 DAVKEGHDVTVHLLNYTRSGRPFWNLFHLQAMRDKK-GNLQYFIGVQ 1036
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 46/67 (68%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI SFV+ DP LPD P+++ASD FL+LT Y R +V+G+NCRFL G DTD +
Sbjct: 927 LATTLERIGHSFVITDPRLPDNPIIFASDQFLELTEYSREDVLGENCRFLQGRDTDLKAV 986
Query: 303 YQVSIAI 309
+ A+
Sbjct: 987 QLIRDAV 993
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 66/130 (50%), Gaps = 15/130 (11%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
SF + D PI+FAS GF ++G++ E++ N R QGP TN + IREA+ +
Sbjct: 666 SFVVVDALKPDLPIIFASTGFFNLTGYTYREVLAGNCRFLQGPDTNPADVASIREALAPQ 725
Query: 90 RPIEV--NLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPIVSRKHMRNSGMSY 146
LLNY+KDG+ FW L ++ + K+D G F+ VQ+ + Y
Sbjct: 726 GTGTFCGRLLNYRKDGSNFWNLLTIAPI--KDDSGTIVKFIGVQLEVS----------KY 773
Query: 147 SEDGGGSRLR 156
+E +RLR
Sbjct: 774 TEGSRANRLR 783
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 39/61 (63%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
+ SFV++D PD+P+++AS F LTGY EV+ NCRFL G DT+ + + A++
Sbjct: 664 QTSFVVVDALKPDLPIIFASTGFFNLTGYTYREVLAGNCRFLQGPDTNPADVASIREALA 723
Query: 311 P 311
P
Sbjct: 724 P 724
>gi|299008150|gb|ADJ00073.1| Evoglow [Mariner mini-transposon delivery vector pMaEvo]
Length = 165
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +ALD + ITDP++ +PIV+ ++GF++M+G+ EI+G+N R QG T+ +
Sbjct: 16 IKKALDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNARFLQGKHTDPAEV 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
IR A++ + P+ V + NYKKDGT FW + + E T+FV +Q I +K
Sbjct: 76 DNIRTALQNKEPVTVQIQNYKKDGTMFWNELNIDPM---EIEDKTYFVGIQNDITKQKE 131
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
+L ++ V+ DP L D P+VY + F+++TGY+ E++G+N RFL G TD + +
Sbjct: 19 ALDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNARFLQGKHTDPAEVDNI 78
Query: 306 SIAIS 310
A+
Sbjct: 79 RTALQ 83
>gi|257051404|ref|YP_003129237.1| bacterio-opsin activator [Halorhabdus utahensis DSM 12940]
gi|256690167|gb|ACV10504.1| putative PAS/PAC sensor protein [Halorhabdus utahensis DSM 12940]
Length = 680
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
ALDE P TI D + P+++ + F++M+G+ + + IG N R QG T+ T +E+
Sbjct: 156 ALDEAPVGITIADATAPDKPLIYVNDSFVEMTGYEKEDAIGVNCRFLQGEGTDAETTLEL 215
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
REA+ +E+ V L NY+ DG+ FW ++S + +DG T+FV Q I RK
Sbjct: 216 REAVMDEQAAAVELRNYRADGSTFWNNLEISPIR-DDDGTVTNFVGFQQDITERKE 270
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 35/56 (62%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ D PD P++Y +D+F+++TGY++ + +G NCRFL G TD ++ A+
Sbjct: 164 ITIADATAPDKPLIYVNDSFVEMTGYEKEDAIGVNCRFLQGEGTDAETTLELREAV 219
>gi|357406409|ref|YP_004918333.1| PAS/PAC sensor protein [Methylomicrobium alcaliphilum 20Z]
gi|351719074|emb|CCE24748.1| putative PAS/PAC sensor protein [Methylomicrobium alcaliphilum 20Z]
Length = 148
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 68/113 (60%), Gaps = 1/113 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
LDE + T+ DP + PIV+A++ F ++G+S+ E+IGRN R QG N+ I I+
Sbjct: 20 LDECINGITLADPDLDDMPIVYANKAFEAVTGYSQEEVIGRNCRFLQGDDRNQEEIKRIK 79
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
EAI ++P+EV L NYKK+G F+ FK+ + G+ +F+ VQ I +
Sbjct: 80 EAINAQKPVEVVLRNYKKNGELFYNRFKI-IPLCDRSGKLIYFLGVQYDITRQ 131
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 43/74 (58%)
Query: 237 GFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296
G I L + L L DP L DMP+VYA+ AF +TGY + EV+G+NCRFL G D
Sbjct: 10 GLIPQILSLILDECINGITLADPDLDDMPIVYANKAFEAVTGYSQEEVIGRNCRFLQGDD 69
Query: 297 TDTTVLYQVSIAIS 310
+ + ++ AI+
Sbjct: 70 RNQEEIKRIKEAIN 83
>gi|289668671|ref|ZP_06489746.1| histidine kinase [Xanthomonas campestris pv. musacearum NCPPB 4381]
Length = 541
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
T+TDP + +PIVFA+R FL+M+G+S E+IG N R QGP T+ +I ++RE+I
Sbjct: 41 MTVTDPHLPDNPIVFANRAFLEMTGYSADEVIGNNCRFLQGPETDPASISDVRESIEARS 100
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S VF + G ++ Q+ + R+ ++
Sbjct: 101 EFATEVLNYRKDGSSFWNALFVSPVF-DDKGNLVYYFGSQLDVSRRRDAEDA 151
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 47/78 (60%)
Query: 232 SLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRF 291
SLP S + ++ + + DPHLPD P+V+A+ AFL++TGY +EV+G NCRF
Sbjct: 19 SLPVEKHRSDIFFAAVETTRMPMTVTDPHLPDNPIVFANRAFLEMTGYSADEVIGNNCRF 78
Query: 292 LNGVDTDTTVLYQVSIAI 309
L G +TD + V +I
Sbjct: 79 LQGPETDPASISDVRESI 96
>gi|162567476|ref|NP_419104.2| sensory box histidine kinase [Caulobacter crescentus CB15]
gi|221233226|ref|YP_002515662.1| photosensory histidine protein kinase LovK [Caulobacter crescentus
NA1000]
gi|160369950|gb|AAK22272.2| LOV histidine kinase LovK [Caulobacter crescentus CB15]
gi|220962398|gb|ACL93754.1| photosensory histidine protein kinase LovK [Caulobacter crescentus
NA1000]
Length = 368
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 66/108 (61%), Gaps = 1/108 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+ + D + PI+FA+ FL+++G++R E+IGRN R QGP T+ + I +R+A+
Sbjct: 34 AMIVADATQPDIPIIFANDAFLRLTGYARDEVIGRNCRFLQGPDTDPKAIQAVRDALAAG 93
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+ V+LLNY+KDG+PFW MS V + G+ +F QV + +K
Sbjct: 94 EDVAVDLLNYRKDGSPFWNALNMSPVR-NDAGQLVYFFGSQVDVTDKK 140
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 52/87 (59%), Gaps = 8/87 (9%)
Query: 224 RLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNE 283
RL G P IS++ + + ++ D PD+P+++A+DAFL+LTGY R+E
Sbjct: 13 RLAAGHGVDDPFAAAISAT--------RMAMIVADATQPDIPIIFANDAFLRLTGYARDE 64
Query: 284 VVGQNCRFLNGVDTDTTVLYQVSIAIS 310
V+G+NCRFL G DTD + V A++
Sbjct: 65 VIGRNCRFLQGPDTDPKAIQAVRDALA 91
>gi|448488460|ref|ZP_21607296.1| bacterio-opsin activator [Halorubrum californiensis DSM 19288]
gi|445696150|gb|ELZ48243.1| bacterio-opsin activator [Halorubrum californiensis DSM 19288]
Length = 667
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 68/119 (57%), Gaps = 1/119 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
V A+++ P +I+DP +S +P+V+ + + + +G+ E +GRN R QGP T T+
Sbjct: 142 VRRAVEDAPIGISISDPDLSDYPLVYVNDAWGEHTGYPVEEALGRNPRFLQGPETAPETV 201
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
E+ EAI E + V + NY++DGTPFW ++ ++ E G H+V Q I RK
Sbjct: 202 EEVGEAIANEEEVTVEIRNYRRDGTPFWNELTVAPIY-DEAGDLAHYVGFQNDISDRKE 259
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 33/53 (62%)
Query: 258 DPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
DP L D P+VY +DA+ + TGY E +G+N RFL G +T + +V AI+
Sbjct: 157 DPDLSDYPLVYVNDAWGEHTGYPVEEALGRNPRFLQGPETAPETVEEVGEAIA 209
>gi|172038851|ref|YP_001805352.1| two-component response regulator [Cyanothece sp. ATCC 51142]
gi|354556166|ref|ZP_08975463.1| response regulator receiver modulated diguanylate cyclase
[Cyanothece sp. ATCC 51472]
gi|171700305|gb|ACB53286.1| two-component response regulator [Cyanothece sp. ATCC 51142]
gi|353551870|gb|EHC21269.1| response regulator receiver modulated diguanylate cyclase
[Cyanothece sp. ATCC 51472]
Length = 483
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 81/152 (53%), Gaps = 6/152 (3%)
Query: 1 MDSQLGLIE--QSFNNRYTL---WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSG 55
++ +L LIE Q FN + L ++EA+ +S ITD + S +PI++ + GF M+G
Sbjct: 142 LEQKLKLIEVSQQFNQKIPLESYLLYEAIAATNNSIVITDATASDYPIIYVNPGFETMTG 201
Query: 56 FSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLV 115
+S E+ G+N R Q + + EIR +++ +P V L NY+KDG+ FW +S +
Sbjct: 202 YSLEEVTGKNCRFLQESDRQQPQLEEIRHCLQQGQPCHVTLRNYRKDGSLFWNEMSLSPI 261
Query: 116 FGKEDGRATHFVAVQVPIVSRKHMRNSGMSYS 147
E G+ +++AVQ + +K Y
Sbjct: 262 -KDESGKIIYYLAVQTDVTDKKRANKEQQRYE 292
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
LY ++ S V+ D D P++Y + F +TGY EV G+NCRFL D L
Sbjct: 166 LYEAIAATNNSIVITDATASDYPIIYVNPGFETMTGYSLEEVTGKNCRFLQESDRQQPQL 225
Query: 303 YQV 305
++
Sbjct: 226 EEI 228
>gi|155212693|gb|ABT17414.1| bacterio-opsin activator protein [Halorubrum sp. TP009]
Length = 669
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 68/119 (57%), Gaps = 1/119 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
V A+++ P +I+DP + +P+V+ + + + +G+ E +GRN R QGP T+ T+
Sbjct: 144 VTRAVEDAPIGISISDPDLPDYPLVYVNNAWEEHTGYPVEEALGRNPRFLQGPGTDPETV 203
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
EI +AI E V + NY++DGTPFW ++ ++ EDG H+V Q I RK
Sbjct: 204 EEIGDAIANEEEATVEIRNYRRDGTPFWNELTVAPIY-DEDGDLAHYVGFQNDISDRKE 261
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 34/53 (64%)
Query: 258 DPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
DP LPD P+VY ++A+ + TGY E +G+N RFL G TD + ++ AI+
Sbjct: 159 DPDLPDYPLVYVNNAWEEHTGYPVEEALGRNPRFLQGPGTDPETVEEIGDAIA 211
>gi|448450276|ref|ZP_21592175.1| bacterio-opsin activator [Halorubrum litoreum JCM 13561]
gi|445812128|gb|EMA62124.1| bacterio-opsin activator [Halorubrum litoreum JCM 13561]
Length = 667
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 68/119 (57%), Gaps = 1/119 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
V A+++ P +I+DP + +P+V+ + + + +G+ E +GRN R QGP T+ T+
Sbjct: 142 VTRAVEDAPIGISISDPDLPDYPLVYVNNAWEEHTGYPVEEALGRNPRFLQGPGTDPETV 201
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
EI +AI E V + NY++DGTPFW ++ ++ EDG H+V Q I RK
Sbjct: 202 EEIGDAIANEEEATVEIRNYRRDGTPFWNELTVAPIY-DEDGDLAHYVGFQNDISDRKE 259
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 34/53 (64%)
Query: 258 DPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
DP LPD P+VY ++A+ + TGY E +G+N RFL G TD + ++ AI+
Sbjct: 157 DPDLPDYPLVYVNNAWEEHTGYPVEEALGRNPRFLQGPGTDPETVEEIGDAIA 209
>gi|448428454|ref|ZP_21584266.1| bacterio-opsin activator [Halorubrum terrestre JCM 10247]
gi|448507510|ref|ZP_21615021.1| bacterio-opsin activator [Halorubrum distributum JCM 9100]
gi|448523274|ref|ZP_21618627.1| bacterio-opsin activator [Halorubrum distributum JCM 10118]
gi|445676419|gb|ELZ28941.1| bacterio-opsin activator [Halorubrum terrestre JCM 10247]
gi|445698465|gb|ELZ50509.1| bacterio-opsin activator [Halorubrum distributum JCM 9100]
gi|445701673|gb|ELZ53649.1| bacterio-opsin activator [Halorubrum distributum JCM 10118]
Length = 667
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 68/119 (57%), Gaps = 1/119 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
V A+++ P +I+DP + +P+V+ + + + +G+ E +GRN R QGP T+ T+
Sbjct: 142 VTRAVEDAPIGISISDPDLPDYPLVYVNNAWEEHTGYPVEEALGRNPRFLQGPGTDPETV 201
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
EI +AI E V + NY++DGTPFW ++ ++ EDG H+V Q I RK
Sbjct: 202 EEIGDAIANEEEATVEIRNYRRDGTPFWNELTVAPIY-DEDGDLAHYVGFQNDISDRKE 259
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 34/53 (64%)
Query: 258 DPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
DP LPD P+VY ++A+ + TGY E +G+N RFL G TD + ++ AI+
Sbjct: 157 DPDLPDYPLVYVNNAWEEHTGYPVEEALGRNPRFLQGPGTDPETVEEIGDAIA 209
>gi|448481617|ref|ZP_21604968.1| bacterio-opsin activator [Halorubrum arcis JCM 13916]
gi|445821870|gb|EMA71654.1| bacterio-opsin activator [Halorubrum arcis JCM 13916]
Length = 667
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 68/119 (57%), Gaps = 1/119 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
V A+++ P +I+DP + +P+V+ + + + +G+ E +GRN R QGP T+ T+
Sbjct: 142 VTRAVEDAPIGISISDPDLPDYPLVYVNNAWEEHTGYPVEEALGRNPRFLQGPGTDPETV 201
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
EI +AI E V + NY++DGTPFW ++ ++ EDG H+V Q I RK
Sbjct: 202 EEIGDAIANEEEATVEIRNYRRDGTPFWNELTVAPIY-DEDGDLAHYVGFQNDISDRKE 259
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 34/53 (64%)
Query: 258 DPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
DP LPD P+VY ++A+ + TGY E +G+N RFL G TD + ++ AI+
Sbjct: 157 DPDLPDYPLVYVNNAWEEHTGYPVEEALGRNPRFLQGPGTDPETVEEIGDAIA 209
>gi|15790465|ref|NP_280289.1| bacterio-opsin activator [Halobacterium sp. NRC-1]
gi|169236201|ref|YP_001689401.1| bacterio-opsin activator [Halobacterium salinarum R1]
gi|47115564|sp|Q9HPU8.1|BAT_HALSA RecName: Full=Bacterioopsin transcriptional activator
gi|10580961|gb|AAG19769.1| bacterio-opsin activator [Halobacterium sp. NRC-1]
gi|167727267|emb|CAP14053.1| bacterioopsin activator Bat [Halobacterium salinarum R1]
Length = 674
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
Query: 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
+ALDE P TI+D + PI++ + F ++G+S E++G N R QGP+TN +
Sbjct: 161 EQALDEAPIGITISDATDPEEPIIYINDSFEDITGYSPDEVVGANHRFLQGPKTNEDRVA 220
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
E AI E+ +V L NY++DG+ FW +S ++ EDG +H+V Q+ + R
Sbjct: 221 EFWTAITEDHDTQVVLRNYRRDGSLFWNQVDISPIY-DEDGTVSHYVGFQMDVSER 275
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYP 313
+ D P+ P++Y +D+F +TGY +EVVG N RFL G T+ + + AI+
Sbjct: 171 ITISDATDPEEPIIYINDSFEDITGYSPDEVVGANHRFLQGPKTNEDRVAEFWTAITEDH 230
Query: 314 KKKSIYMEYVR 324
+ + Y R
Sbjct: 231 DTQVVLRNYRR 241
>gi|448582301|ref|ZP_21645805.1| PAS-PAC-PAC sensing histidine kinase [Haloferax gibbonsii ATCC
33959]
gi|445731949|gb|ELZ83532.1| PAS-PAC-PAC sensing histidine kinase [Haloferax gibbonsii ATCC
33959]
Length = 870
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 66/119 (55%), Gaps = 3/119 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+D TIT+ P+ + + F +M+G+ R+E++GRN R QG T+ + +
Sbjct: 161 AMDSATVGITITEAD-DDQPLTYINDAFEEMTGYDRSEVLGRNCRFLQGEETDTEPVELL 219
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
EAI + V+L NY+KDGTPFW K+S V+ EDG THFV Q R ++N
Sbjct: 220 HEAIEAGESVAVSLTNYRKDGTPFWNELKISPVY--EDGELTHFVGFQTDATVRHALKN 276
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 48/73 (65%), Gaps = 10/73 (13%)
Query: 263 DMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT---TVLYQ-------VSIAISPY 312
D P+ Y +DAF ++TGYDR+EV+G+NCRFL G +TDT +L++ V+++++ Y
Sbjct: 177 DQPLTYINDAFEEMTGYDRSEVLGRNCRFLQGEETDTEPVELLHEAIEAGESVAVSLTNY 236
Query: 313 PKKKSIYMEYVRV 325
K + + +++
Sbjct: 237 RKDGTPFWNELKI 249
>gi|386759609|ref|YP_006232825.1| blue light GTP-binding receptor [Bacillus sp. JS]
gi|384932891|gb|AFI29569.1| blue light GTP-binding receptor [Bacillus sp. JS]
Length = 261
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 69/119 (57%), Gaps = 3/119 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +ALD ITDP++ +PIV+ ++GF++++G+ EI+G+N R QG TN +
Sbjct: 16 IKKALDHARVGVVITDPALEDNPIVYVNQGFVQITGYEAEEILGKNCRFLQGKHTNPAEV 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
IR A++ + P+ V + NYKKDGT FW + + E T+FV +Q I +K
Sbjct: 76 DNIRTALQNKEPVTVQIQNYKKDGTMFWNELNIDPM---EIEDKTYFVGIQKDITEQKE 131
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG-------VDTD 298
+L + V+ DP L D P+VY + F+++TGY+ E++G+NCRFL G VD
Sbjct: 19 ALDHARVGVVITDPALEDNPIVYVNQGFVQITGYEAEEILGKNCRFLQGKHTNPAEVDNI 78
Query: 299 TTVLYQ---VSIAISPYPKKKSIY 319
T L V++ I Y K +++
Sbjct: 79 RTALQNKEPVTVQIQNYKKDGTMF 102
>gi|375363433|ref|YP_005131472.1| Blue-light photoreceptor Phototropin-like protein [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
gi|421730573|ref|ZP_16169699.1| Blue-light photoreceptor Phototropin-like protein [Bacillus
amyloliquefaciens subsp. plantarum M27]
gi|451345830|ref|YP_007444461.1| Blue-light photoreceptor Phototropin-like protein [Bacillus
amyloliquefaciens IT-45]
gi|371569427|emb|CCF06277.1| Blue-light photoreceptor Phototropin-like protein [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
gi|407074727|gb|EKE47714.1| Blue-light photoreceptor Phototropin-like protein [Bacillus
amyloliquefaciens subsp. plantarum M27]
gi|449849588|gb|AGF26580.1| Blue-light photoreceptor Phototropin-like protein [Bacillus
amyloliquefaciens IT-45]
Length = 261
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 71/119 (59%), Gaps = 3/119 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +ALD ITDPS+ +PI++ ++GF+ M+G++ EI+G+N R Q T+R+ +
Sbjct: 16 IKKALDHARIGVVITDPSLEDNPIIYTNQGFMDMTGYASEEILGKNCRFLQSKETDRQQV 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
+IR+++ ++ I V L N KKDGTPFW + ++ ++ +FV Q I +K
Sbjct: 76 AKIRKSLNQKEKITVRLKNVKKDGTPFWNELNIDPLYVED---KLYFVGFQKDITEQKE 131
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+L + V+ DP L D P++Y + F+ +TGY E++G+NCRFL +TD
Sbjct: 19 ALDHARIGVVITDPSLEDNPIIYTNQGFMDMTGYASEEILGKNCRFLQSKETD 71
>gi|292654498|ref|YP_003534395.1| putative bacterio-opsin activator [Haloferax volcanii DS2]
gi|448293499|ref|ZP_21483605.1| bacterio-opsin activator [Haloferax volcanii DS2]
gi|291372918|gb|ADE05145.1| Putative bacterio-opsin activator [Haloferax volcanii DS2]
gi|445570553|gb|ELY25113.1| bacterio-opsin activator [Haloferax volcanii DS2]
Length = 658
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 62/116 (53%), Gaps = 1/116 (0%)
Query: 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
+A+DE P T+ D S+ P+V+ + F M+G+S +GRN R QGP T+ +
Sbjct: 136 EQAIDEAPVGITVADCSLPDRPLVYVNEAFETMTGYSADAALGRNCRYLQGPNTDPERVA 195
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
E+R AI E V LLNY+ +G FW ++ + G DG TH+V Q I R
Sbjct: 196 ELRRAIEAEESASVELLNYRANGETFWNRVDVAPLSGS-DGEVTHYVGFQTDITER 250
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYP 313
+ D LPD P+VY ++AF +TGY + +G+NCR+L G +TD + ++ AI
Sbjct: 146 ITVADCSLPDRPLVYVNEAFETMTGYSADAALGRNCRYLQGPNTDPERVAELRRAIEAEE 205
Query: 314 KKKSIYMEY 322
+ Y
Sbjct: 206 SASVELLNY 214
>gi|448582617|ref|ZP_21646121.1| bacterio-opsin activator [Haloferax gibbonsii ATCC 33959]
gi|445732265|gb|ELZ83848.1| bacterio-opsin activator [Haloferax gibbonsii ATCC 33959]
Length = 658
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 63/116 (54%), Gaps = 1/116 (0%)
Query: 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
+A+DE P T+ D S+ P+V+ + F M+G+S +GRN R QGP T+ +
Sbjct: 136 EQAIDEAPVGITVADCSLPDRPLVYVNEAFEAMTGYSADAALGRNCRYLQGPNTDPERVA 195
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
E+R AI E V LLNY+++G FW ++ + G DG TH+V Q I R
Sbjct: 196 ELRRAIEAEESASVELLNYRENGETFWNRVDVAPLSGP-DGEVTHYVGFQTDITER 250
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYP 313
+ D LPD P+VY ++AF +TGY + +G+NCR+L G +TD + ++ AI
Sbjct: 146 ITVADCSLPDRPLVYVNEAFEAMTGYSADAALGRNCRYLQGPNTDPERVAELRRAIEAEE 205
Query: 314 KKKSIYMEY 322
+ Y
Sbjct: 206 SASVELLNY 214
>gi|350267212|ref|YP_004878519.1| sensory box protein [Bacillus subtilis subsp. spizizenii TU-B-10]
gi|349600099|gb|AEP87887.1| sensory box protein [Bacillus subtilis subsp. spizizenii TU-B-10]
Length = 261
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 74/130 (56%), Gaps = 4/130 (3%)
Query: 10 QSFNNRYTLWV-HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM 68
QSF + L V +ALD ITDP++ +PIV+ ++GF++M+G+ EI+G+N R
Sbjct: 5 QSFGVQGQLEVIKKALDHARVGVVITDPALEDNPIVYVNQGFVQMTGYEAGEILGKNCRF 64
Query: 69 FQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVA 128
QG T+ + IR A++ + P+ V + NYKKDGT FW + + E T+FV
Sbjct: 65 LQGKHTDPAEVDNIRIALQNKEPVTVQIQNYKKDGTMFWNELSIDPL---EIEDKTYFVG 121
Query: 129 VQVPIVSRKH 138
+Q I +K
Sbjct: 122 IQKDITQQKE 131
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 40/64 (62%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
+L + V+ DP L D P+VY + F+++TGY+ E++G+NCRFL G TD + +
Sbjct: 19 ALDHARVGVVITDPALEDNPIVYVNQGFVQMTGYEAGEILGKNCRFLQGKHTDPAEVDNI 78
Query: 306 SIAI 309
IA+
Sbjct: 79 RIAL 82
>gi|428313134|ref|YP_007124111.1| PAS domain-containing protein [Microcoleus sp. PCC 7113]
gi|428254746|gb|AFZ20705.1| PAS domain S-box [Microcoleus sp. PCC 7113]
Length = 880
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+ + D ITDP +PI++++ F K++G+ EI GRN R QG T+ + I
Sbjct: 252 AIASVSDGVLITDPKQPDNPIIYSNPAFSKITGYQPEEIFGRNCRFLQGAETDSEALRTI 311
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
R AI + + ++ LLNY+K+G FW K+S VF E G +F+ +Q I RK
Sbjct: 312 RHAITQRQEVKATLLNYRKNGQSFWNELKISPVFS-EQGDLLYFIGIQTDITERKQ 366
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
++ + ++ DP PD P++Y++ AF K+TGY E+ G+NCRFL G +TD+ L +
Sbjct: 252 AIASVSDGVLITDPKQPDNPIIYSNPAFSKITGYQPEEIFGRNCRFLQGAETDSEALRTI 311
Query: 306 SIAISPYPKKKSIYMEY 322
AI+ + K+ + Y
Sbjct: 312 RHAITQRQEVKATLLNY 328
>gi|294626164|ref|ZP_06704770.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|294667549|ref|ZP_06732764.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
gi|292599516|gb|EFF43647.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|292602669|gb|EFF46105.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
Length = 540
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
T+TDP + +PIVFA+R FL+M+G++ E+IG N R QGP T+ +I ++RE+I
Sbjct: 41 MTVTDPHLPDNPIVFANRAFLEMTGYAADEVIGNNCRFLQGPDTDPASISDVRESIESRS 100
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S VF + G +F Q+ + R+ ++
Sbjct: 101 EFATEVLNYRKDGSSFWNALFISPVF-DDKGNLVYFFGSQLDVSRRRDAEDA 151
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 47/78 (60%)
Query: 232 SLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRF 291
SLP S + ++ + + DPHLPD P+V+A+ AFL++TGY +EV+G NCRF
Sbjct: 19 SLPVEKRRSDIFFAAVETTRMPMTVTDPHLPDNPIVFANRAFLEMTGYAADEVIGNNCRF 78
Query: 292 LNGVDTDTTVLYQVSIAI 309
L G DTD + V +I
Sbjct: 79 LQGPDTDPASISDVRESI 96
>gi|296331991|ref|ZP_06874455.1| blue light GTP-binding receptor [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305675615|ref|YP_003867287.1| blue light GTP-binding receptor [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296150762|gb|EFG91647.1| blue light GTP-binding receptor [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305413859|gb|ADM38978.1| blue light GTP-binding receptor [Bacillus subtilis subsp.
spizizenii str. W23]
Length = 261
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 73/130 (56%), Gaps = 4/130 (3%)
Query: 10 QSFNNRYTLWV-HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM 68
QSF + L V +ALD ITDP++ +PIV+ ++GF++M+G+ EI+G+N R
Sbjct: 5 QSFGIQGQLEVIKKALDHARVGVVITDPALEDNPIVYVNQGFVQMTGYKAGEILGKNCRF 64
Query: 69 FQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVA 128
QG T + IR A++ + P+ V + NYKKDGT FW + + E T+FV
Sbjct: 65 LQGKHTESAEVDNIRIALQNKEPVTVQIQNYKKDGTMFWNELSIDPL---EIEDKTYFVG 121
Query: 129 VQVPIVSRKH 138
+Q I +K
Sbjct: 122 IQKDITQQKE 131
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 40/64 (62%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
+L + V+ DP L D P+VY + F+++TGY E++G+NCRFL G T++ + +
Sbjct: 19 ALDHARVGVVITDPALEDNPIVYVNQGFVQMTGYKAGEILGKNCRFLQGKHTESAEVDNI 78
Query: 306 SIAI 309
IA+
Sbjct: 79 RIAL 82
>gi|420243466|ref|ZP_14747390.1| PAS domain S-box [Rhizobium sp. CF080]
gi|398060866|gb|EJL52678.1| PAS domain S-box [Rhizobium sp. CF080]
Length = 375
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ S + I+F + F KM+G+S EIIGRN R QGP T+R T+ +IREAI + +
Sbjct: 41 VTDPNQSDNTIIFCNEAFRKMTGYSDDEIIGRNCRFLQGPDTDRETVSKIREAIVAGQDV 100
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+++LNY+KDG+ FW +S V E G+ +F A Q+ + K
Sbjct: 101 AIDILNYRKDGSTFWNAVFISPV-RDEAGKIIYFFASQLDFTNVK 144
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 8/87 (9%)
Query: 223 GRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRN 282
RLV G P ++ + ++ DP+ D +++ ++AF K+TGY +
Sbjct: 16 NRLVAGHVSEDPFAAAFKAT--------RMPMIVTDPNQSDNTIIFCNEAFRKMTGYSDD 67
Query: 283 EVVGQNCRFLNGVDTDTTVLYQVSIAI 309
E++G+NCRFL G DTD + ++ AI
Sbjct: 68 EIIGRNCRFLQGPDTDRETVSKIREAI 94
>gi|448475322|ref|ZP_21603040.1| HTR-like protein [Halorubrum aidingense JCM 13560]
gi|445816793|gb|EMA66680.1| HTR-like protein [Halorubrum aidingense JCM 13560]
Length = 596
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
ALDE P TITDP+ +P+V+ + F++M+G+ R + +G N R QGP T+ + +
Sbjct: 263 ALDEAPVGITITDPTRPDNPMVYVNDRFVEMTGYDREDAVGVNCRFLQGPDTDEEPVERL 322
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
RE+I P V LLNY++DGT FW ++ + +DGR +V Q I + K
Sbjct: 323 RESIAAAEPTSVELLNYRRDGTEFWNRVSVAPIR-DDDGRPIQWVGFQEDISAFKE 377
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 43/79 (54%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
+L + DP PD PMVY +D F+++TGYDR + VG NCRFL G DTD + ++
Sbjct: 263 ALDEAPVGITITDPTRPDNPMVYVNDRFVEMTGYDREDAVGVNCRFLQGPDTDEEPVERL 322
Query: 306 SIAISPYPKKKSIYMEYVR 324
+I+ + Y R
Sbjct: 323 RESIAAAEPTSVELLNYRR 341
>gi|413959779|ref|ZP_11399010.1| histidine kinase [Burkholderia sp. SJ98]
gi|413939729|gb|EKS71697.1| histidine kinase [Burkholderia sp. SJ98]
Length = 403
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 65/105 (61%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PIVF + FL ++G+ E++G N R+ QGP T+R TI EIR+AI E R I
Sbjct: 36 VTDPNQVDNPIVFVNSAFLNLTGYDVEELMGNNCRLLQGPETSRATISEIRDAIAEGREI 95
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+LNY+KDG+ FW +S V E G ++ A Q+ I R+
Sbjct: 96 NTEILNYRKDGSSFWNALFISPV-RNEAGDIVYYFASQLDISRRR 139
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP+ D P+V+ + AFL LTGYD E++G NCR L G +T +
Sbjct: 23 FFAAVSTTRMPMLVTDPNQVDNPIVFVNSAFLNLTGYDVEELMGNNCRLLQGPETSRATI 82
Query: 303 YQVSIAIS 310
++ AI+
Sbjct: 83 SEIRDAIA 90
>gi|448624188|ref|ZP_21670261.1| PAS-PAC-PAC sensing histidine kinase [Haloferax denitrificans ATCC
35960]
gi|445750155|gb|EMA01594.1| PAS-PAC-PAC sensing histidine kinase [Haloferax denitrificans ATCC
35960]
Length = 858
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+D TIT+ P+ + + F +M+G+ R E +GRN R QG T+ + +
Sbjct: 149 AMDSATVGITITEAD-GDQPLTYVNDAFEEMTGYDRQEAVGRNCRFLQGAETDSEPVETL 207
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
REA+ V+L NY+KDGTPFW K+S V+ +DG THFV Q R +RN
Sbjct: 208 REAVENGESAAVSLTNYRKDGTPFWNELKISPVY--DDGELTHFVGFQTDATVRHALRN 264
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 82/195 (42%), Gaps = 37/195 (18%)
Query: 140 RNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALD---SDDTGLEIEDSC-- 194
RN S + G R+ V G+ RE+ +D LLD V+ + D L D C
Sbjct: 9 RNGARSARDASGEERILLAVRGARDRELLAD-LLDAYEVVVWERGREDGPPLPEFDLCIV 67
Query: 195 -------EASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPG--------MGFI 239
A+DLE RK+ A D L V+ Q R+ + +P I
Sbjct: 68 DMATYPAVAADLEARKS-DAGDRFLPVVLTVEQDEQRVAARRLSDVPDDVLAVPAPSAVI 126
Query: 240 SSSLYISLGRIKQSFVL---------------IDPHLPDMPMVYASDAFLKLTGYDRNEV 284
S + L +QS L I D P+ Y +DAF ++TGYDR E
Sbjct: 127 RSRVESLLQTRRQSLQLALYRRAMDSATVGITITEADGDQPLTYVNDAFEEMTGYDRQEA 186
Query: 285 VGQNCRFLNGVDTDT 299
VG+NCRFL G +TD+
Sbjct: 187 VGRNCRFLQGAETDS 201
>gi|428204021|ref|YP_007082610.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
protein [Pleurocapsa sp. PCC 7327]
gi|427981453|gb|AFY79053.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
protein [Pleurocapsa sp. PCC 7327]
Length = 479
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 70/125 (56%), Gaps = 1/125 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+ P+ ITD + +P+++ + GF +M+G+S AE IG+N R QG + + I
Sbjct: 168 AIAATPNGIVITDANAPYNPVIYVNPGFERMTGYSSAEAIGKNCRFLQGEDRKQPALEII 227
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R+AIR+++ V + NY+KDGT FW +S + E G+ TH++AVQ I K +
Sbjct: 228 RQAIRQQKECRVTVRNYRKDGTLFWNDISISPI-RDEAGKVTHYIAVQTNITEYKRVEEE 286
Query: 143 GMSYS 147
Y
Sbjct: 287 RQRYQ 291
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
V+ D + P P++Y + F ++TGY E +G+NCRFL G D L + AI
Sbjct: 176 IVITDANAPYNPVIYVNPGFERMTGYSSAEAIGKNCRFLQGEDRKQPALEIIRQAI 231
>gi|423691124|ref|ZP_17665644.1| blue-light-activated histidine kinase [Pseudomonas fluorescens
SS101]
gi|387999199|gb|EIK60528.1| blue-light-activated histidine kinase [Pseudomonas fluorescens
SS101]
Length = 531
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 69/109 (63%), Gaps = 2/109 (1%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+ +TDP+ +PI+FA++ FL ++GF E+IGRN R QGP+T++ + +++ A+
Sbjct: 35 AMIVTDPAEPDNPIIFANQAFLTLTGFELDEVIGRNCRFLQGPQTDKNALHQVQRAVERH 94
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
V +LNY+KDG+ FW +S +F E G+ +F A Q+ VSR+H
Sbjct: 95 HEACVEVLNYRKDGSTFWNELFISPLF-NERGQLVYFFASQLD-VSRRH 141
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 41/57 (71%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ ++ DP PD P+++A+ AFL LTG++ +EV+G+NCRFL G TD L+QV A+
Sbjct: 35 AMIVTDPAEPDNPIIFANQAFLTLTGFELDEVIGRNCRFLQGPQTDKNALHQVQRAV 91
>gi|449095476|ref|YP_007427967.1| blue light GTP-binding receptor [Bacillus subtilis XF-1]
gi|449029391|gb|AGE64630.1| blue light GTP-binding receptor [Bacillus subtilis XF-1]
Length = 261
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +ALD + ITDP++ +PIV+ ++GF++M+G+ EI+G+N R QG T+
Sbjct: 16 IKKALDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEA 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
IR A++ + P+ V + NYKKDGT FW + + ++ T+FV +Q I +K
Sbjct: 76 ENIRTALQNKEPVTVQIQNYKKDGTMFWNELNIDPMVIED---KTYFVGIQKDITKQKE 131
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 36/53 (67%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+L ++ V+ DP L D P+VY + F+++TGY+ E++G+NCRFL G TD
Sbjct: 19 ALDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTD 71
>gi|428319523|ref|YP_007117405.1| PAS/PAC sensor signal transduction histidine kinase [Oscillatoria
nigro-viridis PCC 7112]
gi|428243203|gb|AFZ08989.1| PAS/PAC sensor signal transduction histidine kinase [Oscillatoria
nigro-viridis PCC 7112]
Length = 630
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 70/122 (57%), Gaps = 2/122 (1%)
Query: 18 LWVHE-ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNR 76
LW+++ A+ TI+D + +PI++ + F M+G+ R EIIG+NGR G T+
Sbjct: 205 LWLYDRAIAATSTGVTISDATDPDNPIIYCNPAFESMTGYRRQEIIGKNGRFLHGSDTDP 264
Query: 77 RTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+ IR+A++ E +V L NY+KDGT FW F +S V + G THF+ VQ I R
Sbjct: 265 AAVEIIRQALQAESECKVILKNYRKDGTAFWNCFSISPVRDRM-GNLTHFIGVQRDITQR 323
Query: 137 KH 138
K
Sbjct: 324 KQ 325
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%)
Query: 262 PDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYPKKKSIYME 321
PD P++Y + AF +TGY R E++G+N RFL+G DTD + + A+ + K I
Sbjct: 227 PDNPIIYCNPAFESMTGYRRQEIIGKNGRFLHGSDTDPAAVEIIRQALQAESECKVILKN 286
Query: 322 Y 322
Y
Sbjct: 287 Y 287
>gi|359461408|ref|ZP_09249971.1| PAS sensor diguanylate cyclase/phophodiesterase [Acaryochloris sp.
CCMEE 5410]
Length = 912
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 63/109 (57%), Gaps = 1/109 (0%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88
D I+D ++ G PI+FAS F + +G++ E+IG N R QGP+T+ T+ EIR A++
Sbjct: 128 DGIIISDATVPGFPIIFASSNFYEFTGYTPDEVIGHNCRFLQGPKTDANTVDEIRLALKN 187
Query: 89 ERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+P E +LNY K G PFW L ++ + + G V +Q I +K
Sbjct: 188 YQPFEGEILNYCKTGQPFWNLLRIKPLRNAQ-GEVHFLVGIQTDITQQK 235
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYPK 314
++ D +P P+++AS F + TGY +EV+G NCRFL G TD + ++ +A+ Y
Sbjct: 131 IISDATVPGFPIIFASSNFYEFTGYTPDEVIGHNCRFLQGPKTDANTVDEIRLALKNYQP 190
Query: 315 KKSIYMEYVRV 325
+ + Y +
Sbjct: 191 FEGEILNYCKT 201
>gi|435845892|ref|YP_007308142.1| PAS domain S-box [Natronococcus occultus SP4]
gi|433672160|gb|AGB36352.1| PAS domain S-box [Natronococcus occultus SP4]
Length = 616
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 70/116 (60%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++E P TI+DPS +P+V+ + + +++G+ +++GRN R+ QG ++ + E+
Sbjct: 121 AINEAPVGITISDPSREDNPLVYINEAYEEITGYDYEDVVGRNCRLLQGEDSDPDAVAEM 180
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
R I EERP+ V ++NY+KD T FW ++ V + G TH+V Q + +RK
Sbjct: 181 RAGIEEERPVTVEIVNYRKDDTRFWNEVTIAPVR-NDAGELTHYVGFQNDVTARKE 235
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYP 313
+ DP D P+VY ++A+ ++TGYD +VVG+NCR L G D+D + ++ I
Sbjct: 129 ITISDPSREDNPLVYINEAYEEITGYDYEDVVGRNCRLLQGEDSDPDAVAEMRAGIE--- 185
Query: 314 KKKSIYMEYV 323
+++ + +E V
Sbjct: 186 EERPVTVEIV 195
>gi|448390489|ref|ZP_21566112.1| multi-sensor signal transduction histidine kinase [Haloterrigena
salina JCM 13891]
gi|445666903|gb|ELZ19555.1| multi-sensor signal transduction histidine kinase [Haloterrigena
salina JCM 13891]
Length = 652
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P T+ D + S +P+V+A+ F +++G+SR EI+GRN R QG RT + E+
Sbjct: 321 AIDEAPIGITLCDATQSDNPLVYANDQFERITGYSREEILGRNCRFLQGERTEAEPVDEL 380
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
R AI ER V L NY+ DG+ FW ++ V E G T++V Q + RK
Sbjct: 381 RTAIDAERSTTVELRNYRTDGSEFWNRVTVAPVV-DERGTVTNYVGFQQDVTERKE 435
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
L D D P+VYA+D F ++TGY R E++G+NCRFL G T+ + ++ AI
Sbjct: 329 ITLCDATQSDNPLVYANDQFERITGYSREEILGRNCRFLQGERTEAEPVDELRTAI 384
>gi|424917421|ref|ZP_18340785.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WSM597]
gi|392853597|gb|EJB06118.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WSM597]
Length = 345
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
+TD PIV A++ FL ++G++ E++GRN R QGP T+ + EIR +I EER
Sbjct: 40 MVVTDARKPDLPIVLANKSFLDLTGYAADEVVGRNCRFLQGPATSPIAVAEIRASIAEER 99
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+ V +LNYKK G PFW +S + G +DGR +F Q+
Sbjct: 100 DVSVEILNYKKSGEPFWNRLHLSPIHG-DDGRILYFFGSQI 139
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 41/66 (62%)
Query: 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQ 304
++ R + V+ D PD+P+V A+ +FL LTGY +EVVG+NCRFL G T + +
Sbjct: 31 VAFERTRMPMVVTDARKPDLPIVLANKSFLDLTGYAADEVVGRNCRFLQGPATSPIAVAE 90
Query: 305 VSIAIS 310
+ +I+
Sbjct: 91 IRASIA 96
>gi|380474414|emb|CCF45790.1| Aureochrome1, partial [Colletotrichum higginsianum]
Length = 917
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 68/105 (64%), Gaps = 1/105 (0%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L D F +T+P ++ +PIVFAS GF+K++G++R+EII RN R QG T+R + ++ AI
Sbjct: 630 LGDCFCLTNPGLADNPIVFASDGFVKVTGYTRSEIIPRNCRFLQGQHTDRVPVRRLKTAI 689
Query: 87 REERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
E + +LNYKK+G PFW L ++ ++ E G+ F+ QV
Sbjct: 690 SERKESVELILNYKKNGDPFWNLLYVAPLYN-EAGKLAFFIGGQV 733
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 45/71 (63%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYP 313
F L +P L D P+V+ASD F+K+TGY R+E++ +NCRFL G TD + ++ AIS
Sbjct: 634 FCLTNPGLADNPIVFASDGFVKVTGYTRSEIIPRNCRFLQGQHTDRVPVRRLKTAISERK 693
Query: 314 KKKSIYMEYVR 324
+ + + Y +
Sbjct: 694 ESVELILNYKK 704
>gi|448607023|ref|ZP_21659280.1| PAS-PAC-PAC sensing histidine kinase [Haloferax sulfurifontis ATCC
BAA-897]
gi|445738451|gb|ELZ89971.1| PAS-PAC-PAC sensing histidine kinase [Haloferax sulfurifontis ATCC
BAA-897]
Length = 858
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+D TIT+ P+ + + F +M+G+ R E IGRN R QG T+ + +
Sbjct: 149 AMDGATVGITITEAD-GDQPLTYVNDAFEEMTGYDRQEAIGRNCRFLQGAETDSEPVETL 207
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
REA+ V+L NY+KDGTPFW K+S V+ +DG THFV Q R +RN
Sbjct: 208 REAVESGESATVSLTNYRKDGTPFWNELKISPVY--DDGELTHFVGFQTDATVRHALRN 264
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 83/201 (41%), Gaps = 37/201 (18%)
Query: 134 VSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALD---SDDTGLEI 190
V+ RN S + G R+ V G+ RE+ +D LLD V+ + D L
Sbjct: 3 VNEDASRNGARSARDASGEERILLAVRGARDRELLAD-LLDAYEVVVWERGREDGPPLPE 61
Query: 191 EDSC---------EASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPG------ 235
D C +DLE RK+ A D + V+ Q R+ + +P
Sbjct: 62 FDLCIVDMATYPAVTADLEARKS-DAGDRFVPVVLTVEQDEQRVAARRLSDVPDDVLAVP 120
Query: 236 --MGFISSSLYISLGRIKQSFVL---------------IDPHLPDMPMVYASDAFLKLTG 278
I S + L +QS L I D P+ Y +DAF ++TG
Sbjct: 121 APSAVIRSRVESLLQTRRQSLQLALYRRAMDGATVGITITEADGDQPLTYVNDAFEEMTG 180
Query: 279 YDRNEVVGQNCRFLNGVDTDT 299
YDR E +G+NCRFL G +TD+
Sbjct: 181 YDRQEAIGRNCRFLQGAETDS 201
>gi|338998134|ref|ZP_08636813.1| PAS/PAC and GAF sensor-containing diguanylate
cyclase/phosphodiesterase [Halomonas sp. TD01]
gi|338765029|gb|EGP19982.1| PAS/PAC and GAF sensor-containing diguanylate
cyclase/phosphodiesterase [Halomonas sp. TD01]
Length = 863
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 59/110 (53%), Gaps = 1/110 (0%)
Query: 28 PDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIR 87
P + D +G PIVFA+ F +++G+ EIIG N R GP T I IR +
Sbjct: 309 PSGIIMVDAQQAGMPIVFANPAFSRITGYEHGEIIGNNSRFLHGPETAPEAIDAIRAGMC 368
Query: 88 EERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
E+R + + LLNY+KDG PFW +S VF + G +HF+ + I K
Sbjct: 369 EQRDVSITLLNYRKDGEPFWNHLVVSPVF-DQSGTCSHFIGIHQDITHEK 417
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 31/44 (70%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDT 297
+++D MP+V+A+ AF ++TGY+ E++G N RFL+G +T
Sbjct: 312 IIMVDAQQAGMPIVFANPAFSRITGYEHGEIIGNNSRFLHGPET 355
>gi|254409941|ref|ZP_05023721.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196182977|gb|EDX77961.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 776
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 68/110 (61%), Gaps = 1/110 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
++D PIV+ + F +++G+SR E++GRN R QG TN + + +IR+A+R E+
Sbjct: 41 IVLSDAGKPDMPIVYCNPAFERITGYSRQEVVGRNCRFLQGVDTNPQVVEQIRQALRTEQ 100
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140
++V L NY+KDGTPFW +S + ++ R +F+ VQ I S+K +
Sbjct: 101 EVKVVLKNYRKDGTPFWNELAISPIRDAKE-RVIYFIGVQTDITSQKQAQ 149
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 46/76 (60%)
Query: 247 LGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVS 306
LG VL D PDMP+VY + AF ++TGY R EVVG+NCRFL GVDT+ V+ Q+
Sbjct: 34 LGAASCGIVLSDAGKPDMPIVYCNPAFERITGYSRQEVVGRNCRFLQGVDTNPQVVEQIR 93
Query: 307 IAISPYPKKKSIYMEY 322
A+ + K + Y
Sbjct: 94 QALRTEQEVKVVLKNY 109
>gi|170749732|ref|YP_001755992.1| signal transduction histidine kinase [Methylobacterium
radiotolerans JCM 2831]
gi|170656254|gb|ACB25309.1| signal transduction histidine kinase [Methylobacterium
radiotolerans JCM 2831]
Length = 503
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 60/102 (58%), Gaps = 1/102 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
ITDP +PIVF + F K++G+ EIIGRN R QG TN+ I +IR AI PI
Sbjct: 45 ITDPHQPDNPIVFVNAAFSKLTGYRHDEIIGRNCRFLQGAETNKADIAKIRAAIARRVPI 104
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
E+ LLN+KK G FW +S VF + DG T+F A Q +
Sbjct: 105 EIELLNHKKSGEVFWNRLLISPVFDR-DGELTYFFASQFDVT 145
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Query: 240 SSSLYISLGRIKQSFVLI-DPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
S+ ++S R + +LI DPH PD P+V+ + AF KLTGY +E++G+NCRFL G +T+
Sbjct: 28 STDPFVSAVRATRMPMLITDPHQPDNPIVFVNAAFSKLTGYRHDEIIGRNCRFLQGAETN 87
Query: 299 TTVLYQVSIAIS 310
+ ++ AI+
Sbjct: 88 KADIAKIRAAIA 99
>gi|306845922|ref|ZP_07478489.1| PAS domain S-box-containing protein [Brucella inopinata BO1]
gi|306273557|gb|EFM55402.1| PAS domain S-box-containing protein [Brucella inopinata BO1]
Length = 489
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
IT+P + +PIVFA+ FLK++G+ E++GRN R QG T+ + I+ AI E+PI
Sbjct: 36 ITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPI 95
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+++++NYKK G FW +S V DGR HFV+ Q+ +
Sbjct: 96 DIDIINYKKSGEAFWNRLHISPVHNA-DGRLQHFVSSQLDV 135
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 42/57 (73%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
++ +PHLPD P+V+A+ AFLKLTGY+ +EV+G+NCRFL G TD + + AI+
Sbjct: 34 MLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIA 90
>gi|424794274|ref|ZP_18220263.1| Sensory box histidine kinase/response regulator [Xanthomonas
translucens pv. graminis ART-Xtg29]
gi|422796051|gb|EKU24636.1| Sensory box histidine kinase/response regulator [Xanthomonas
translucens pv. graminis ART-Xtg29]
Length = 542
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 66/110 (60%), Gaps = 1/110 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP + +PIVF +R FL+M+G+S E++G N R QGP T+R T+ +REAI +
Sbjct: 43 VTDPRQADNPIVFVNRAFLEMTGYSSEELLGNNCRFLQGPDTDRDTVDSVREAIAARSEV 102
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
V +LNY+KDG+ FW +S V+ E ++ Q+ + R+ ++
Sbjct: 103 AVEILNYRKDGSSFWNALFISPVY-NEHSELVYYFGSQLDVSRRRDTEDA 151
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S + ++ + ++ DP D P+V+ + AFL++TGY E++G NCRFL G DTD
Sbjct: 27 SDIFFAAVETTRMPMIVTDPRQADNPIVFVNRAFLEMTGYSSEELLGNNCRFLQGPDTDR 86
Query: 300 TVLYQVSIAIS 310
+ V AI+
Sbjct: 87 DTVDSVREAIA 97
>gi|398305804|ref|ZP_10509390.1| sensory box protein [Bacillus vallismortis DV1-F-3]
Length = 261
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 74/130 (56%), Gaps = 4/130 (3%)
Query: 10 QSFNNRYTLWV-HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM 68
QSF + L V +ALD ITDP++ +PIV+ ++GF++M+G+ EI+G+N R
Sbjct: 5 QSFGIQGQLEVIKKALDHARVGVVITDPALEDNPIVYVNQGFVQMTGYEAEEILGKNCRF 64
Query: 69 FQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVA 128
QG T+ + I+ A++ + P+ V + NYKKDGT FW + + E T+FV
Sbjct: 65 LQGKHTDPAEVKNIKTALQNKEPVTVQIQNYKKDGTMFWNELNIDPL---EIEGKTYFVG 121
Query: 129 VQVPIVSRKH 138
+Q I +K
Sbjct: 122 IQKDITRQKE 131
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
+L + V+ DP L D P+VY + F+++TGY+ E++G+NCRFL G TD + +
Sbjct: 19 ALDHARVGVVITDPALEDNPIVYVNQGFVQMTGYEAEEILGKNCRFLQGKHTDPAEVKNI 78
Query: 306 SIAIS 310
A+
Sbjct: 79 KTALQ 83
>gi|46121225|ref|XP_385167.1| hypothetical protein FG04991.1 [Gibberella zeae PH-1]
Length = 656
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L SF ++DPS SG+PI+ AS F +++G+SR E++ N R QGP+T+R I +R AI
Sbjct: 285 LKGSFCLSDPSRSGNPIMLASDEFEELTGYSRTEVLAHNCRFLQGPQTDRDRIANMRSAI 344
Query: 87 REERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
LLN++KDGTPFW L + + K G+ F+ Q+ + S H
Sbjct: 345 WRNDECTELLLNFRKDGTPFWNLLFLCPLLDKT-GKTKFFMGAQIDVSSSIH 395
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 35/60 (58%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+K SF L DP P++ ASD F +LTGY R EV+ NCRFL G TD + + AI
Sbjct: 285 LKGSFCLSDPSRSGNPIMLASDEFEELTGYSRTEVLAHNCRFLQGPQTDRDRIANMRSAI 344
>gi|430757134|ref|YP_007208463.1| Photoactive flavo- yellow protein [Bacillus subtilis subsp.
subtilis str. BSP1]
gi|430021654|gb|AGA22260.1| Photoactive flavo- yellow protein [Bacillus subtilis subsp.
subtilis str. BSP1]
Length = 261
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 69/119 (57%), Gaps = 3/119 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +ALD ITDP++ +PIV+ ++GF++M+G+ EI+G+N R QG T+ +
Sbjct: 16 IKKALDHARVGVVITDPALEDNPIVYVNQGFVQMTGYEAEEILGKNCRFLQGKHTDPAEV 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
IR A++ + P+ + + NYKKDGT FW + + E T+FV +Q I +K
Sbjct: 76 DNIRTALQNKEPVTIQIQNYKKDGTMFWNELNIDPM---EIEDKTYFVGIQNDITKQKE 131
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 35/53 (66%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+L + V+ DP L D P+VY + F+++TGY+ E++G+NCRFL G TD
Sbjct: 19 ALDHARVGVVITDPALEDNPIVYVNQGFVQMTGYEAEEILGKNCRFLQGKHTD 71
>gi|448622505|ref|ZP_21669199.1| bacterio-opsin activator [Haloferax denitrificans ATCC 35960]
gi|445754587|gb|EMA05992.1| bacterio-opsin activator [Haloferax denitrificans ATCC 35960]
Length = 659
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 62/116 (53%), Gaps = 1/116 (0%)
Query: 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
+A+DE P T+ D S+ P+V+ + F M+G+S +GRN R QGP T+ +
Sbjct: 136 EQAIDEAPVGITVADCSLPDRPLVYVNEAFETMTGYSADAALGRNCRYLQGPNTDPERVA 195
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
E+R AI E V LLNY+ +G FW ++ + G DG TH+V Q I R
Sbjct: 196 ELRRAIEAEESASVELLNYRANGETFWNRVDVAPLSGP-DGEVTHYVGFQTDITER 250
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYP 313
+ D LPD P+VY ++AF +TGY + +G+NCR+L G +TD + ++ AI
Sbjct: 146 ITVADCSLPDRPLVYVNEAFETMTGYSADAALGRNCRYLQGPNTDPERVAELRRAIEAEE 205
Query: 314 KKKSIYMEY 322
+ Y
Sbjct: 206 SASVELLNY 214
>gi|398836637|ref|ZP_10593969.1| PAS domain S-box [Herbaspirillum sp. YR522]
gi|398211118|gb|EJM97741.1| PAS domain S-box [Herbaspirillum sp. YR522]
Length = 549
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 63/105 (60%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
++DP PIVF + F+ M+G++R E+IGRN R QGP T+R + +I A+ E R I
Sbjct: 53 VSDPRRPDTPIVFVNDAFINMTGYTRDEVIGRNCRFLQGPETDRAVVRQIGSALAERREI 112
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+LNY+KDG+ FW +S V+ + DG +F Q+ I R+
Sbjct: 113 ATEILNYRKDGSTFWNALFISPVYDR-DGELVYFFGSQLDISRRR 156
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 43/60 (71%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
+ ++ DP PD P+V+ +DAF+ +TGY R+EV+G+NCRFL G +TD V+ Q+ A++
Sbjct: 48 RMPMIVSDPRRPDTPIVFVNDAFINMTGYTRDEVIGRNCRFLQGPETDRAVVRQIGSALA 107
>gi|424883969|ref|ZP_18307597.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WU95]
gi|392515630|gb|EIW40363.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WU95]
Length = 367
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 72/121 (59%), Gaps = 4/121 (3%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
ITDPS +PI+F++ F K++G++ E++G+N R+ QGP T+ + ++R+AI E I
Sbjct: 40 ITDPSQHDNPIIFSNAAFSKLTGYTPEELVGKNCRLLQGPDTDPSAVTKLRKAIDSEDSI 99
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSEDGGG 152
V+LLNY+KDG+ FW +S G+ +F A Q+ H++N + +E G
Sbjct: 100 SVDLLNYRKDGSTFWNALYVSPARDSS-GKVKYFFASQLDFT---HIKNREIELAEARGN 155
Query: 153 S 153
+
Sbjct: 156 A 156
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 37/56 (66%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
++ DP D P+++++ AF KLTGY E+VG+NCR L G DTD + + ++ AI
Sbjct: 38 MIITDPSQHDNPIIFSNAAFSKLTGYTPEELVGKNCRLLQGPDTDPSAVTKLRKAI 93
>gi|404317909|ref|ZP_10965842.1| signal transduction histidine kinase [Ochrobactrum anthropi
CTS-325]
Length = 480
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++ P IT+P + +PI+FA+ F ++G+ EIIG+N R QGP T+ + + I
Sbjct: 15 AVELTPMPMLITNPRLPDNPIIFANEAFQNLTGYEADEIIGKNCRFLQGPGTDPKHVEII 74
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
A+ E+ +E+++LNYKK G PFW +S V E+G HFV+ Q+ +
Sbjct: 75 HSALEAEQSVEIDILNYKKSGEPFWNRLHISPV-KTENGELHHFVSSQLDVT 125
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 35/45 (77%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
++ +P LPD P+++A++AF LTGY+ +E++G+NCRFL G TD
Sbjct: 23 MLITNPRLPDNPIIFANEAFQNLTGYEADEIIGKNCRFLQGPGTD 67
>gi|153010973|ref|YP_001372187.1| signal transduction histidine kinase [Ochrobactrum anthropi ATCC
49188]
gi|221272051|sp|A6X554.1|LOVHK_OCHA4 RecName: Full=Blue-light-activated histidine kinase
gi|151562861|gb|ABS16358.1| signal transduction histidine kinase [Ochrobactrum anthropi ATCC
49188]
Length = 491
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++ P IT+P + +PI+FA+ F ++G+ EIIG+N R QGP T+ + + I
Sbjct: 26 AVELTPMPMLITNPRLPDNPIIFANEAFQNLTGYEADEIIGKNCRFLQGPGTDPKHVEII 85
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
A+ E+ +E+++LNYKK G PFW +S V E+G HFV+ Q+ +
Sbjct: 86 HSALEAEQSVEIDILNYKKSGEPFWNRLHISPV-KTENGELHHFVSSQLDVT 136
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 35/45 (77%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
++ +P LPD P+++A++AF LTGY+ +E++G+NCRFL G TD
Sbjct: 34 MLITNPRLPDNPIIFANEAFQNLTGYEADEIIGKNCRFLQGPGTD 78
>gi|448339592|ref|ZP_21528610.1| bacterio-opsin activator [Natrinema pallidum DSM 3751]
gi|445619581|gb|ELY73108.1| bacterio-opsin activator [Natrinema pallidum DSM 3751]
Length = 649
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 70/116 (60%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL+E P TI+DP +P+V+ + + +M+G+ E++GRN R QG ++ I ++
Sbjct: 135 ALEEAPVGITISDPDREDNPLVYVNEAYEEMTGYEFDEVVGRNCRFLQGEDSDEAAIADM 194
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
AI E+RP+ V L NY+KDGT FW ++ V EDGR T++V Q I +RK
Sbjct: 195 AAAIDEDRPVTVELKNYRKDGTEFWNEVTIAPVR-DEDGRVTNYVGFQNDITARKE 249
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 33/45 (73%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+ DP D P+VY ++A+ ++TGY+ +EVVG+NCRFL G D+D
Sbjct: 143 ITISDPDREDNPLVYVNEAYEEMTGYEFDEVVGRNCRFLQGEDSD 187
>gi|242345213|dbj|BAH80320.1| aureochrome1-like protein [Fucus distichus subsp. evanescens]
Length = 198
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 59/91 (64%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+AL + ITD S++ +PIVFAS GFL+++ ++ E++GRN R QGP T+ R + +
Sbjct: 108 KALQTAQQNSVITDASLADNPIVFASSGFLELTRYTLTEVLGRNCRFLQGPETDPRAVDK 167
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKM 112
IR AI E V LLNY+ DGT FW LF +
Sbjct: 168 IRTAIEEGCDTSVCLLNYRADGTTFWNLFHL 198
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 43/68 (63%)
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTV 301
SL +L +Q+ V+ D L D P+V+AS FL+LT Y EV+G+NCRFL G +TD
Sbjct: 105 SLVKALQTAQQNSVITDASLADNPIVFASSGFLELTRYTLTEVLGRNCRFLQGPETDPRA 164
Query: 302 LYQVSIAI 309
+ ++ AI
Sbjct: 165 VDKIRTAI 172
>gi|453328516|dbj|GAC89226.1| PAS/PAC sensor hybrid histidine kinase [Gluconobacter thailandicus
NBRC 3255]
Length = 578
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 63/105 (60%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+ DP + PI FA+ FL ++G+ EI+GRN R QG T+ + ++REAI E +P+
Sbjct: 67 LADPRLPDCPIAFANNAFLDLTGYEADEIVGRNCRFLQGAGTDPNDVRQLREAIAECKPV 126
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+ +LNY+++GTPFW M VF E G +F A Q+ + R+
Sbjct: 127 ALEILNYRRNGTPFWNAIFMGPVF-DEQGELIYFFASQLDVSKRR 170
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 55/94 (58%), Gaps = 8/94 (8%)
Query: 217 HYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKL 276
H++Q T S P + S+ + ++ + +L DP LPD P+ +A++AFL L
Sbjct: 36 HWAQTT--------ISDPTLENRSNVFFAAVEMTRMPMILADPRLPDCPIAFANNAFLDL 87
Query: 277 TGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
TGY+ +E+VG+NCRFL G TD + Q+ AI+
Sbjct: 88 TGYEADEIVGRNCRFLQGAGTDPNDVRQLREAIA 121
>gi|408355750|ref|YP_006844281.1| blue-light photoreceptor [Amphibacillus xylanus NBRC 15112]
gi|407726521|dbj|BAM46519.1| putative blue-light photoreceptor [Amphibacillus xylanus NBRC
15112]
Length = 253
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 71/116 (61%), Gaps = 3/116 (2%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
EAL+ ITDP+ HPI+FA++G+ ++G+ E+IG+NGR+ QG T+ + I
Sbjct: 12 EALNHTNVGLIITDPNQDHHPIIFANKGYANLTGYEIDEVIGKNGRLLQGEETDPKVINT 71
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+++AI+ E+ I V + NYKK+G FW K+++ DG+ ++V VQ I K
Sbjct: 72 LKQAIKAEQSITVEIYNYKKNGEGFWN--KLTIDPMWVDGKL-YYVGVQKDITETK 124
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
+L ++ DP+ P+++A+ + LTGY+ +EV+G+N R L G +TD V+ +
Sbjct: 13 ALNHTNVGLIITDPNQDHHPIIFANKGYANLTGYEIDEVIGKNGRLLQGEETDPKVINTL 72
Query: 306 SIAIS 310
AI
Sbjct: 73 KQAIK 77
>gi|381152639|ref|ZP_09864508.1| PAS domain S-box [Methylomicrobium album BG8]
gi|380884611|gb|EIC30488.1| PAS domain S-box [Methylomicrobium album BG8]
Length = 538
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
ITD HPI++A+ F +M+G+SR E+IG N R+ QGP T+ I IR+AIRE +P
Sbjct: 177 ITDAKRKNHPIIYANPAFSQMTGYSREELIGLNPRILQGPETDPEAIETIRQAIREGKPC 236
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135
L N++K+GT FW +S V+ G TH++ VQ +
Sbjct: 237 LTTLKNHRKNGTIFWNELFISPVYDSR-GNLTHWIGVQTDVTQ 278
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
++ D + P++YA+ AF ++TGY R E++G N R L G +TD + + AI
Sbjct: 175 IIITDAKRKNHPIIYANPAFSQMTGYSREELIGLNPRILQGPETDPEAIETIRQAI 230
>gi|325276367|ref|ZP_08142143.1| histidine kinase [Pseudomonas sp. TJI-51]
gi|324098494|gb|EGB96564.1| histidine kinase [Pseudomonas sp. TJI-51]
Length = 382
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 64/105 (60%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PI+FA+R FL M+G+ AEI+GRN R QGP T+ + +R++I + I
Sbjct: 43 VTDPNRDDNPIIFANRAFLDMTGYELAEILGRNCRFLQGPETDTEVVATLRDSIEQRVDI 102
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+LNY+KDG+ FW +S +F + HF A Q+ + R+
Sbjct: 103 ATEILNYRKDGSSFWNALFISPIFNERGDLIYHF-ASQLDVSRRR 146
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 41/60 (68%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP+ D P+++A+ AFL +TGY+ E++G+NCRFL G +TDT V+
Sbjct: 30 FFAAVETTRMPMIVTDPNRDDNPIIFANRAFLDMTGYELAEILGRNCRFLQGPETDTEVV 89
>gi|295691216|ref|YP_003594909.1| signal transduction histidine kinase [Caulobacter segnis ATCC
21756]
gi|295433119|gb|ADG12291.1| signal transduction histidine kinase [Caulobacter segnis ATCC
21756]
Length = 366
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+ +TD + + +PI+FA+ FLK++G++R E+IGRN RM QGP T+R + ++ AI
Sbjct: 34 AMIVTDAAQADNPIIFANDAFLKLTGYTRDEVIGRNCRMLQGPETSREAVQKLSAAIAAG 93
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+ V LLNY+KDG+ FW +S V G +F Q+ + +K
Sbjct: 94 EDVNVELLNYRKDGSTFWNALYVSPVRNTV-GEIVYFFGSQLDVTDKK 140
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 42/60 (70%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
+ + ++ D D P+++A+DAFLKLTGY R+EV+G+NCR L G +T + ++S AI+
Sbjct: 32 RMAMIVTDAAQADNPIIFANDAFLKLTGYTRDEVIGRNCRMLQGPETSREAVQKLSAAIA 91
>gi|298711143|emb|CBJ32369.1| putative blue light receptor [Ectocarpus siliculosus]
Length = 135
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 73/121 (60%), Gaps = 4/121 (3%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
S+ +TDP + +PI+F S GF + +G+++ E+ GRN R QG +T+ I +IREA+++
Sbjct: 11 SYCVTDPDLEDNPIIFCSDGFAEFTGYAKEEVEGRNCRFLQGAKTDPGDIAKIREAVKQN 70
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR---KHMRNSGMSY 146
+ + LLNYKKDG+ F F ++ +F E G +F+ +QV + + + N G Y
Sbjct: 71 KEACLCLLNYKKDGSTFHNQFFLTPLF-DEAGTLAYFLGIQVQVKTASDGQEPENPGWIY 129
Query: 147 S 147
+
Sbjct: 130 T 130
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
S+ + DP L D P+++ SD F + TGY + EV G+NCRFL G TD + ++ A+
Sbjct: 11 SYCVTDPDLEDNPIIFCSDGFAEFTGYAKEEVEGRNCRFLQGAKTDPGDIAKIREAV 67
>gi|448630469|ref|ZP_21673124.1| HTR-like protein [Haloarcula vallismortis ATCC 29715]
gi|445756392|gb|EMA07767.1| HTR-like protein [Haloarcula vallismortis ATCC 29715]
Length = 726
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 68/116 (58%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P ITDP + +P+++A+ + ++G+S E++G+N RM QG T + +
Sbjct: 276 AIDEAPVGVVITDPDQTDNPLIYANDHYRDLTGYSLPELLGKNCRMLQGENTEPEPVAAM 335
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
R+AI E + V L NY+KDGT FW +++ V +DG ++V Q I +RK
Sbjct: 336 RDAIDTEEHVTVELRNYRKDGTEFWNRVRIAPVR-DDDGTVVNYVGFQQDITARKQ 390
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 10/81 (12%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLY----------Q 304
V+ DP D P++YA+D + LTGY E++G+NCR L G +T+ +
Sbjct: 285 VITDPDQTDNPLIYANDHYRDLTGYSLPELLGKNCRMLQGENTEPEPVAAMRDAIDTEEH 344
Query: 305 VSIAISPYPKKKSIYMEYVRV 325
V++ + Y K + + VR+
Sbjct: 345 VTVELRNYRKDGTEFWNRVRI 365
>gi|170742982|ref|YP_001771637.1| histidine kinase [Methylobacterium sp. 4-46]
gi|168197256|gb|ACA19203.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
Length = 544
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 68/110 (61%), Gaps = 1/110 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP +PI+FA++ F ++G+ +E+IGRN R QGP T+ +TI E+R AI+E R I
Sbjct: 51 VTDPRQPDNPIIFANQAFRALTGYDPSELIGRNCRFLQGPETDPQTIAEVRRAIKERREI 110
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+K+G+ FW +S V+ + G +F Q+ + R+ ++
Sbjct: 111 STEILNYRKNGSSFWNALFVSPVY-NDAGDLVYFFGSQLDVSRRRDAEDA 159
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 44/70 (62%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S + ++ + ++ DP PD P+++A+ AF LTGYD +E++G+NCRFL G +TD
Sbjct: 35 SDIFFAAVETTRMPMIVTDPRQPDNPIIFANQAFRALTGYDPSELIGRNCRFLQGPETDP 94
Query: 300 TVLYQVSIAI 309
+ +V AI
Sbjct: 95 QTIAEVRRAI 104
>gi|325925085|ref|ZP_08186505.1| PAS domain S-box [Xanthomonas perforans 91-118]
gi|325544501|gb|EGD15864.1| PAS domain S-box [Xanthomonas perforans 91-118]
Length = 540
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
T+TDP + +PIVFA+R FL+M+G++ E+IG N R QGP T+ +I ++R +I
Sbjct: 41 MTVTDPHLPDNPIVFANRAFLEMTGYAADEVIGNNCRFLQGPETDPASISDVRASIESRS 100
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S VF + G +F Q+ + R+ ++
Sbjct: 101 EFATEVLNYRKDGSSFWNALFISPVF-DDKGNLVYFFGSQLDVSRRRDAEDA 151
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 44/70 (62%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S + ++ + + DPHLPD P+V+A+ AFL++TGY +EV+G NCRFL G +TD
Sbjct: 27 SDIFFAAVETTRMPMTVTDPHLPDNPIVFANRAFLEMTGYAADEVIGNNCRFLQGPETDP 86
Query: 300 TVLYQVSIAI 309
+ V +I
Sbjct: 87 ASISDVRASI 96
>gi|149376152|ref|ZP_01893917.1| Two-component response regulator [Marinobacter algicola DG893]
gi|149359557|gb|EDM48016.1| Two-component response regulator [Marinobacter algicola DG893]
Length = 858
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 79/162 (48%), Gaps = 9/162 (5%)
Query: 28 PDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIR 87
P+ + D P+V+A+ F +M+G+S E++G N R QG T + IR+ +
Sbjct: 310 PNGMLMVDARSPDMPVVYANPAFTEMTGYSYDEVMGSNCRFLQGEETALEALETIRQGLH 369
Query: 88 EERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYS 147
+ + V L+NY+KDGTPFW ++S VFG DG THF+ Q + H R +
Sbjct: 370 HQTEVNVELINYRKDGTPFWNHLRISPVFGN-DGLCTHFIGTQQDVT---HQREQEAQIT 425
Query: 148 EDGGGSRLREIVFGSCRREVCSDSL-LDLDR----VLALDSD 184
L + G +E D+L LD R VL LD D
Sbjct: 426 YQATHDLLTGLPNGVSFQETLHDALILDGGRGALAVLYLDLD 467
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 10/82 (12%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL----------Y 303
+++D PDMP+VYA+ AF ++TGY +EV+G NCRFL G +T L
Sbjct: 313 MLMVDARSPDMPVVYANPAFTEMTGYSYDEVMGSNCRFLQGEETALEALETIRQGLHHQT 372
Query: 304 QVSIAISPYPKKKSIYMEYVRV 325
+V++ + Y K + + ++R+
Sbjct: 373 EVNVELINYRKDGTPFWNHLRI 394
>gi|397775745|ref|YP_006543291.1| PAS sensor protein [Natrinema sp. J7-2]
gi|397684838|gb|AFO59215.1| PAS sensor protein [Natrinema sp. J7-2]
Length = 630
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 70/116 (60%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL+E P TI+DP +P+V+ + + +M+G+ E++GRN R QG ++ I E+
Sbjct: 135 ALEEAPVGITISDPDREDNPLVYVNEAYEEMTGYEFDEVVGRNCRFLQGEDSDEAAIAEM 194
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
AI E+RP+ V L NY+KDGT FW ++ V EDGR T++V Q I +RK
Sbjct: 195 AAAIDEDRPVTVELKNYRKDGTEFWNEVTIAPVR-DEDGRVTNYVGFQNDITARKE 249
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 33/45 (73%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+ DP D P+VY ++A+ ++TGY+ +EVVG+NCRFL G D+D
Sbjct: 143 ITISDPDREDNPLVYVNEAYEEMTGYEFDEVVGRNCRFLQGEDSD 187
>gi|398307975|ref|ZP_10511449.1| sensory box protein [Bacillus mojavensis RO-H-1]
Length = 261
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 73/130 (56%), Gaps = 4/130 (3%)
Query: 10 QSFNNRYTL-WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM 68
QSF + L + +ALD ITDP++ +PIV+ ++GF++M+G+ EI+G+N R
Sbjct: 5 QSFGIKGQLDVIKKALDHARVGVVITDPALEDNPIVYVNQGFVQMTGYEAEEILGKNCRF 64
Query: 69 FQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVA 128
QG T+ + IR ++ + P+ V + NYKKDGT FW + + E T+FV
Sbjct: 65 LQGKDTDAGEVDNIRAGLQNKEPVTVQIQNYKKDGTMFWNELNIDPL---EIEDKTYFVG 121
Query: 129 VQVPIVSRKH 138
+Q I +K
Sbjct: 122 IQKDITKQKE 131
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 36/53 (67%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+L + V+ DP L D P+VY + F+++TGY+ E++G+NCRFL G DTD
Sbjct: 19 ALDHARVGVVITDPALEDNPIVYVNQGFVQMTGYEAEEILGKNCRFLQGKDTD 71
>gi|448342979|ref|ZP_21531921.1| bacterio-opsin activator [Natrinema gari JCM 14663]
gi|445624039|gb|ELY77428.1| bacterio-opsin activator [Natrinema gari JCM 14663]
Length = 630
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 70/116 (60%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL+E P TI+DP +P+V+ + + +M+G+ E++GRN R QG ++ I E+
Sbjct: 135 ALEEAPVGITISDPDREDNPLVYVNEAYEEMTGYEFDEVVGRNCRFLQGEDSDEAAIAEM 194
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
AI E+RP+ V L NY+KDGT FW ++ V EDGR T++V Q I +RK
Sbjct: 195 AAAIDEDRPVTVELKNYRKDGTEFWNEVTIAPVR-DEDGRVTNYVGFQNDITARKE 249
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 33/45 (73%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+ DP D P+VY ++A+ ++TGY+ +EVVG+NCRFL G D+D
Sbjct: 143 ITISDPDREDNPLVYVNEAYEEMTGYEFDEVVGRNCRFLQGEDSD 187
>gi|346725425|ref|YP_004852094.1| histidine kinase [Xanthomonas axonopodis pv. citrumelo F1]
gi|346650172|gb|AEO42796.1| histidine kinase [Xanthomonas axonopodis pv. citrumelo F1]
Length = 540
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
T+TDP + +PIVFA+R FL+M+G++ E+IG N R QGP T+ +I ++R +I
Sbjct: 41 MTVTDPHLPDNPIVFANRAFLEMTGYAADEVIGNNCRFLQGPETDPASISDVRASIESRS 100
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S VF + G +F Q+ + R+ ++
Sbjct: 101 EFATEVLNYRKDGSSFWNALFISPVF-DDKGNLVYFFGSQLDVSRRRDAEDA 151
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 44/70 (62%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S + ++ + + DPHLPD P+V+A+ AFL++TGY +EV+G NCRFL G +TD
Sbjct: 27 SDIFFAAVETTRMPMTVTDPHLPDNPIVFANRAFLEMTGYAADEVIGNNCRFLQGPETDP 86
Query: 300 TVLYQVSIAI 309
+ V +I
Sbjct: 87 ASISDVRASI 96
>gi|220926021|ref|YP_002501323.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
ORS 2060]
gi|219950628|gb|ACL61020.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
ORS 2060]
Length = 559
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+ DP PIVFA+ FL ++G+ +E++GRN R QG T+ + ++REA+ E +PI
Sbjct: 47 LADPRQDDTPIVFANNAFLDLTGYEESEVLGRNCRFLQGSGTDPEHVAKLREAVHERKPI 106
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+ +LNY++DGTPFW M V G +F A Q+ + R+
Sbjct: 107 AIEILNYRRDGTPFWNAVFMGPVHDPA-GEVIYFFASQLDVTQRR 150
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + +L DP D P+V+A++AFL LTGY+ +EV+G+NCRFL G TD +
Sbjct: 34 FFAAVEMTRMPMILADPRQDDTPIVFANNAFLDLTGYEESEVLGRNCRFLQGSGTDPEHV 93
Query: 303 YQVSIAISPYPKKKSIYME 321
++ A+ ++K I +E
Sbjct: 94 AKLREAVH---ERKPIAIE 109
>gi|448605763|ref|ZP_21658389.1| bacterio-opsin activator [Haloferax sulfurifontis ATCC BAA-897]
gi|445741789|gb|ELZ93288.1| bacterio-opsin activator [Haloferax sulfurifontis ATCC BAA-897]
Length = 606
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 62/116 (53%), Gaps = 1/116 (0%)
Query: 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
+A+DE P T+ D S+ P+V+ + F M+G+S +GRN R QGP T+ +
Sbjct: 83 EQAIDEAPVGITVADCSLPDRPLVYVNEAFETMTGYSADAALGRNCRYLQGPNTDPARVA 142
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
E+R AI E V LLNY+ +G FW ++ + G DG TH+V Q I R
Sbjct: 143 ELRRAIEAEESASVELLNYRANGETFWNRVDVAPLSGP-DGEVTHYVGFQTDITER 197
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYP 313
+ D LPD P+VY ++AF +TGY + +G+NCR+L G +TD + ++ AI
Sbjct: 93 ITVADCSLPDRPLVYVNEAFETMTGYSADAALGRNCRYLQGPNTDPARVAELRRAIEAEE 152
Query: 314 KKKSIYMEY 322
+ Y
Sbjct: 153 SASVELLNY 161
>gi|265985444|ref|ZP_06098179.1| signal transduction histidine kinase [Brucella sp. 83/13]
gi|264664036|gb|EEZ34297.1| signal transduction histidine kinase [Brucella sp. 83/13]
Length = 456
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
IT+P + +PIVFA+ FL+++G+ E++GRN R QG T+ + I+ AI E+PI
Sbjct: 3 ITNPHLPDNPIVFANPAFLRLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPI 62
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+++++NYKK G FW +S V DGR HFV+ Q+ +
Sbjct: 63 DIDIINYKKSGEAFWNRLHISPVHNA-DGRLQHFVSSQLDV 102
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 42/57 (73%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
++ +PHLPD P+V+A+ AFL+LTGY+ +EV+G+NCRFL G TD + + AI+
Sbjct: 1 MLITNPHLPDNPIVFANPAFLRLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIA 57
>gi|383619882|ref|ZP_09946288.1| PAS/PAC sensor protein [Halobiforma lacisalsi AJ5]
gi|448696567|ref|ZP_21697979.1| PAS/PAC sensor protein [Halobiforma lacisalsi AJ5]
gi|445783195|gb|EMA34030.1| PAS/PAC sensor protein [Halobiforma lacisalsi AJ5]
Length = 1462
Score = 89.0 bits (219), Expect = 3e-15, Method: Composition-based stats.
Identities = 46/107 (42%), Positives = 61/107 (57%), Gaps = 1/107 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ P TITDP +PIV+A+ F +++G+S AE +GRN R QG T+ I E+R
Sbjct: 335 LEYAPIGVTITDPDEPDNPIVYANEEFERLTGYSPAEYLGRNCRFLQGEETDPERIGELR 394
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
EA+ V L NY+ DGTPFW ++ EDG THFV Q
Sbjct: 395 EAVEAAEQTTVELRNYRADGTPFWNRVTVT-PLEDEDGAVTHFVGFQ 440
Score = 54.7 bits (130), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/43 (53%), Positives = 31/43 (72%)
Query: 256 LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+ DP PD P+VYA++ F +LTGY E +G+NCRFL G +TD
Sbjct: 344 ITDPDEPDNPIVYANEEFERLTGYSPAEYLGRNCRFLQGEETD 386
>gi|152964317|ref|YP_001360101.1| PAS/PAC sensor protein [Kineococcus radiotolerans SRS30216]
gi|151358834|gb|ABS01837.1| putative PAS/PAC sensor protein [Kineococcus radiotolerans
SRS30216]
Length = 723
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
SFTI+DP+ +P+V+ + F +++G+ R E++G+N R QGP T+R + IR A+
Sbjct: 182 SFTISDPTKPDNPLVWTNPAFERVTGYGR-EVLGQNCRFLQGPGTDREAVARIRRALETG 240
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+ LLNY+KDGT FW +S V DGR THFV VQ + R
Sbjct: 241 DTVTELLLNYRKDGTAFWNEVVISPVH-DADGRLTHFVGVQSDVTLR 286
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPY 312
SF + DP PD P+V+ + AF ++TGY R EV+GQNCRFL G TD + ++ A+
Sbjct: 182 SFTISDPTKPDNPLVWTNPAFERVTGYGR-EVLGQNCRFLQGPGTDREAVARIRRALETG 240
Query: 313 PKKKSIYMEY 322
+ + Y
Sbjct: 241 DTVTELLLNY 250
>gi|448344651|ref|ZP_21533556.1| bacterio-opsin activator [Natrinema altunense JCM 12890]
gi|445637558|gb|ELY90707.1| bacterio-opsin activator [Natrinema altunense JCM 12890]
Length = 629
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 70/116 (60%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL+E P TI+DP +P+V+ + + +M+G+ E++GRN R QG ++ I E+
Sbjct: 135 ALEEAPVGITISDPDREDNPLVYVNEAYEEMTGYEFDEVVGRNCRFLQGEDSDEAAIAEM 194
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
AI E+RP+ V L NY+KDGT FW ++ V EDGR T++V Q I +RK
Sbjct: 195 AAAIDEDRPVTVELKNYRKDGTEFWNEVTIAPVR-DEDGRVTNYVGFQNDITARKE 249
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 33/45 (73%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+ DP D P+VY ++A+ ++TGY+ +EVVG+NCRFL G D+D
Sbjct: 143 ITISDPDREDNPLVYVNEAYEEMTGYEFDEVVGRNCRFLQGEDSD 187
>gi|443472907|ref|ZP_21062932.1| diguanylate cyclase/phosphodiesterase [Pseudomonas pseudoalcaligenes
KF707]
gi|442903470|gb|ELS28761.1| diguanylate cyclase/phosphodiesterase [Pseudomonas pseudoalcaligenes
KF707]
Length = 1895
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 68/115 (59%), Gaps = 2/115 (1%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
I D S PI++ + F +++G+S E +GRN R QGP + I EIR A+ E+R +
Sbjct: 1204 ICDASAPDLPIIYVNPAFERITGYSAGETLGRNCRFLQGPDREQTGIAEIRRALEEQREV 1263
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYS 147
V L N++KDGTPFW ++ V E GR THF+ VQ I +K + S ++Y+
Sbjct: 1264 HVVLRNFRKDGTPFWNDLYIAPV-PDEHGRITHFIGVQNDISEQKRV-ESELAYN 1316
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 36/55 (65%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
++ D PD+P++Y + AF ++TGY E +G+NCRFL G D + T + ++ A+
Sbjct: 1203 LICDASAPDLPIIYVNPAFERITGYSAGETLGRNCRFLQGPDREQTGIAEIRRAL 1257
>gi|146343422|ref|YP_001208470.1| histidine kinase [Bradyrhizobium sp. ORS 278]
gi|146196228|emb|CAL80255.1| putative sensor histidine kinase with PAS/PAC and Response
regulator receiver domains [Bradyrhizobium sp. ORS 278]
Length = 534
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 70/116 (60%), Gaps = 2/116 (1%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP + +PI+FA+R FL+M+G+ EI+G N R QGP T+R TI +R AI + I
Sbjct: 42 VTDPRQNDNPILFANRAFLEMTGYGLTEIVGSNCRFLQGPDTDRDTIDAVRTAIANRQDI 101
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSE 148
V +LNY+K+G FW +S V+ + +G +F Q+ VSR+ S + S+
Sbjct: 102 AVEVLNYRKNGAAFWNALFISPVYNR-NGDLVYFFGSQLD-VSRRRDAESALVQSQ 155
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 41/68 (60%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP D P+++A+ AFL++TGY E+VG NCRFL G DTD +
Sbjct: 29 FFAAVETTRMPMIVTDPRQNDNPILFANRAFLEMTGYGLTEIVGSNCRFLQGPDTDRDTI 88
Query: 303 YQVSIAIS 310
V AI+
Sbjct: 89 DAVRTAIA 96
>gi|300868645|ref|ZP_07113257.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506]
gi|300333339|emb|CBN58449.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506]
Length = 1140
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 67/114 (58%), Gaps = 1/114 (0%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88
+ I D + PI++ + F +++G+S+AEI G+N R QGP T+ + E+R A+RE
Sbjct: 70 NGIVIADARLPDCPIIYCNPAFERITGYSQAEIEGKNCRFLQGPDTDPAALEELRNALRE 129
Query: 89 ERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R EV L NY+KDGT FW +S V K+ G+ THF+ VQ I R + S
Sbjct: 130 GRACEVVLKNYRKDGTHFWNKLAISPVRDKK-GQLTHFIGVQSDISYRIEAQES 182
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 37/56 (66%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
V+ D LPD P++Y + AF ++TGY + E+ G+NCRFL G DTD L ++ A+
Sbjct: 72 IVIADARLPDCPIIYCNPAFERITGYSQAEIEGKNCRFLQGPDTDPAALEELRNAL 127
>gi|350551714|ref|ZP_08920927.1| PAS/PAC sensor hybrid histidine kinase [Thiorhodospira sibirica
ATCC 700588]
gi|349796852|gb|EGZ50635.1| PAS/PAC sensor hybrid histidine kinase [Thiorhodospira sibirica
ATCC 700588]
Length = 1042
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL+ +PDS I D S P+V+ ++ F +++G+ R EI+G+N R Q T + + +
Sbjct: 145 ALNAIPDSIAIADASDPEMPLVYINQAFEQLTGYRREEILGKNCRFLQADDTEQTALDVL 204
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
R+A+ E +P + L NY+KDGTPFW ++ V E G THFV +Q
Sbjct: 205 RQALHEGKPSKTLLRNYRKDGTPFWNQLSITPV-RNETGTITHFVGIQ 251
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
+L I S + D P+MP+VY + AF +LTGY R E++G+NCRFL DT+ T L +
Sbjct: 145 ALNAIPDSIAIADASDPEMPLVYINQAFEQLTGYRREEILGKNCRFLQADDTEQTALDVL 204
Query: 306 SIAISPYPKKKSIYMEY 322
A+ K++ Y
Sbjct: 205 RQALHEGKPSKTLLRNY 221
>gi|448678692|ref|ZP_21689699.1| HTR-like protein [Haloarcula argentinensis DSM 12282]
gi|445772679|gb|EMA23724.1| HTR-like protein [Haloarcula argentinensis DSM 12282]
Length = 726
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 74/131 (56%), Gaps = 1/131 (0%)
Query: 7 LIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNG 66
+ EQ R L A+DE P TITDP+ +P+++A+ + +++G+S E++G+N
Sbjct: 260 VTEQKERERELLRNKRAIDEAPVGVTITDPNRPDNPLIYANDHYRELTGYSLPELLGKNC 319
Query: 67 RMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHF 126
R+ QG T+ + +R+AI + V L NY+KDGT FW +++ V +DG ++
Sbjct: 320 RILQGENTDPEPVDALRDAIDAGEQVSVELRNYRKDGTEFWNRVRIAPVR-DDDGTVVNY 378
Query: 127 VAVQVPIVSRK 137
V Q I RK
Sbjct: 379 VGFQQDITERK 389
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 10/81 (12%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL----------YQ 304
+ DP+ PD P++YA+D + +LTGY E++G+NCR L G +TD + Q
Sbjct: 285 TITDPNRPDNPLIYANDHYRELTGYSLPELLGKNCRILQGENTDPEPVDALRDAIDAGEQ 344
Query: 305 VSIAISPYPKKKSIYMEYVRV 325
VS+ + Y K + + VR+
Sbjct: 345 VSVELRNYRKDGTEFWNRVRI 365
>gi|306838998|ref|ZP_07471819.1| PAS domain S-box-containing protein [Brucella sp. NF 2653]
gi|306405904|gb|EFM62162.1| PAS domain S-box-containing protein [Brucella sp. NF 2653]
Length = 489
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
IT+P + +PIVFA+ FL+++G+ E++GRN R QG T+ + I+ AI E+PI
Sbjct: 36 ITNPHLPDNPIVFANPAFLRLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPI 95
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+++++NYKK G FW +S V DGR HFV+ Q+ +
Sbjct: 96 DIDIINYKKSGEAFWNRLHISPVHNA-DGRLQHFVSSQLDV 135
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 42/57 (73%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
++ +PHLPD P+V+A+ AFL+LTGY+ +EV+G+NCRFL G TD + + AI+
Sbjct: 34 MLITNPHLPDNPIVFANPAFLRLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIA 90
>gi|157835749|pdb|2PR5|A Chain A, Structural Basis For Light-dependent Signaling In The
Dimeric Lov Photosensor Ytva (dark Structure)
gi|157835750|pdb|2PR5|B Chain B, Structural Basis For Light-dependent Signaling In The
Dimeric Lov Photosensor Ytva (dark Structure)
gi|157835751|pdb|2PR6|A Chain A, Structural Basis For Light-dependent Signaling In The
Dimeric Lov Photosensor Ytva (light Structure)
gi|157835752|pdb|2PR6|B Chain B, Structural Basis For Light-dependent Signaling In The
Dimeric Lov Photosensor Ytva (light Structure)
Length = 132
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 67/114 (58%), Gaps = 3/114 (2%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
LD + ITDP++ +PIV+ ++GF++M+G+ EI+G+N R QG T+ + IR
Sbjct: 5 LDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNIR 64
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
A++ + P+ V + NYKKDGT FW + + E T+FV +Q I +K
Sbjct: 65 TALQNKEPVTVQIQNYKKDGTMFWNELNIDPM---EIEDKTYFVGIQNDITKQK 115
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 39/64 (60%)
Query: 247 LGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVS 306
L ++ V+ DP L D P+VY + F+++TGY+ E++G+NCRFL G TD + +
Sbjct: 5 LDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNIR 64
Query: 307 IAIS 310
A+
Sbjct: 65 TALQ 68
>gi|422590595|ref|ZP_16665249.1| histidine kinase [Pseudomonas syringae pv. morsprunorum str.
M302280]
gi|330877741|gb|EGH11890.1| histidine kinase [Pseudomonas syringae pv. morsprunorum str.
M302280]
Length = 534
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 65/105 (61%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PI+F++R FL+M+G++ EI+G N R QGP T+ + IR+AI E I
Sbjct: 37 VTDPNSPDNPIIFSNRAFLEMTGYAAEEILGTNCRFLQGPDTDPAVVRSIRDAIEERADI 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
++NY+KDG+ FW +S V+ + G +F A Q+ I RK
Sbjct: 97 SAEIINYRKDGSSFWNALFISPVY-NDAGDLIYFFASQLDISRRK 140
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 43/67 (64%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP+ PD P+++++ AFL++TGY E++G NCRFL G DTD V+
Sbjct: 24 FFAAVETTRMPMIVTDPNSPDNPIIFSNRAFLEMTGYAAEEILGTNCRFLQGPDTDPAVV 83
Query: 303 YQVSIAI 309
+ AI
Sbjct: 84 RSIRDAI 90
>gi|168701427|ref|ZP_02733704.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
2246]
Length = 1032
Score = 88.6 bits (218), Expect = 4e-15, Method: Composition-based stats.
Identities = 45/118 (38%), Positives = 68/118 (57%), Gaps = 3/118 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+ + IT P++ +PI +AS GF ++G+ E +GRN R QG ++ + +
Sbjct: 517 AIQAVTQGILITSPALPDNPITYASPGFEGVTGYPPREALGRNCRFLQGKDSDPAAVALV 576
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPIVSRKHM 139
REA+R R V +LNY+KDGTPFW +S + ++D G THFV V V + RK +
Sbjct: 577 REAVRAGRDCAVEVLNYRKDGTPFWNALSVSPI--RDDAGELTHFVGVLVDVTDRKKL 632
Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 35/60 (58%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ Q ++ P LPD P+ YAS F +TGY E +G+NCRFL G D+D + V A+
Sbjct: 521 VTQGILITSPALPDNPITYASPGFEGVTGYPPREALGRNCRFLQGKDSDPAAVALVREAV 580
>gi|148557956|ref|YP_001257576.1| sensory box protein [Brucella ovis ATCC 25840]
gi|148369241|gb|ABQ62113.1| sensory box protein [Brucella ovis ATCC 25840]
Length = 463
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
IT+P + +PIVFA+ FLK++G+ E++GRN R QG T+ + I+ AI E+PI
Sbjct: 10 ITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVCAIKSAIAAEKPI 69
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+++++NYKK G FW +S V +GR HFV+ Q+ +
Sbjct: 70 DIDIINYKKSGEAFWNRLHISPVHNA-NGRLQHFVSSQLDV 109
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 42/57 (73%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
++ +PHLPD P+V+A+ AFLKLTGY+ +EV+G+NCRFL G TD + + AI+
Sbjct: 8 MLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVCAIKSAIA 64
>gi|448543688|ref|ZP_21625242.1| bacterio-opsin activator [Haloferax sp. ATCC BAA-646]
gi|448550780|ref|ZP_21629083.1| bacterio-opsin activator [Haloferax sp. ATCC BAA-645]
gi|448558827|ref|ZP_21633240.1| bacterio-opsin activator [Haloferax sp. ATCC BAA-644]
gi|445706411|gb|ELZ58294.1| bacterio-opsin activator [Haloferax sp. ATCC BAA-646]
gi|445711285|gb|ELZ63079.1| bacterio-opsin activator [Haloferax sp. ATCC BAA-645]
gi|445712060|gb|ELZ63845.1| bacterio-opsin activator [Haloferax sp. ATCC BAA-644]
Length = 658
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 61/116 (52%), Gaps = 1/116 (0%)
Query: 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
+A+DE P TI D S+ P+V+ + F M+G+S +GRN R QGP T+ +
Sbjct: 136 EQAIDEAPVGITIADCSLPDRPLVYVNEAFETMTGYSADAALGRNCRYLQGPNTDPERVA 195
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+R AI E V LLNY+ +G FW ++ + G DG TH+V Q I R
Sbjct: 196 ALRRAIEAEESASVELLNYRANGETFWNRVDIAPLSGP-DGEVTHYVGFQTDITER 250
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+ D LPD P+VY ++AF +TGY + +G+NCR+L G +TD
Sbjct: 146 ITIADCSLPDRPLVYVNEAFETMTGYSADAALGRNCRYLQGPNTD 190
>gi|78048310|ref|YP_364485.1| histidine kinase [Xanthomonas campestris pv. vesicatoria str.
85-10]
gi|78036740|emb|CAJ24433.1| sensory box histidine kinase/response regulator [Xanthomonas
campestris pv. vesicatoria str. 85-10]
Length = 540
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
T+TDP + +PIVFA+R FL+M+G++ E+IG N R QGP T+ +I ++R +I
Sbjct: 41 MTVTDPHLPDNPIVFANRAFLEMTGYAADEVIGNNCRFLQGPDTDPASISDVRASIESRS 100
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S VF + G +F Q+ + R+ ++
Sbjct: 101 EFATEVLNYRKDGSSFWNALFISPVF-DDKGNLVYFFGSQLDVSRRRDAEDA 151
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 44/70 (62%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S + ++ + + DPHLPD P+V+A+ AFL++TGY +EV+G NCRFL G DTD
Sbjct: 27 SDIFFAAVETTRMPMTVTDPHLPDNPIVFANRAFLEMTGYAADEVIGNNCRFLQGPDTDP 86
Query: 300 TVLYQVSIAI 309
+ V +I
Sbjct: 87 ASISDVRASI 96
>gi|422652098|ref|ZP_16714886.1| histidine kinase [Pseudomonas syringae pv. actinidiae str. M302091]
gi|330965169|gb|EGH65429.1| histidine kinase [Pseudomonas syringae pv. actinidiae str. M302091]
Length = 534
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 65/105 (61%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PI+F++R FL+M+G++ EI+G N R QGP T+ + IR+AI E I
Sbjct: 37 VTDPNSPDNPIIFSNRAFLEMTGYAAEEILGTNCRFLQGPDTDPAVVRSIRDAIEERADI 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
++NY+KDG+ FW +S V+ + G +F A Q+ I RK
Sbjct: 97 SAEIINYRKDGSSFWNALFISPVY-NDAGDLIYFFASQLDISRRK 140
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 43/67 (64%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP+ PD P+++++ AFL++TGY E++G NCRFL G DTD V+
Sbjct: 24 FFAAVETTRMPMIVTDPNSPDNPIIFSNRAFLEMTGYAAEEILGTNCRFLQGPDTDPAVV 83
Query: 303 YQVSIAI 309
+ AI
Sbjct: 84 RSIRDAI 90
>gi|170740287|ref|YP_001768942.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
gi|168194561|gb|ACA16508.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
Length = 812
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 62/98 (63%), Gaps = 1/98 (1%)
Query: 34 TDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIE 93
TDP + +PIVFA+ F ++G+ A+++GRN R+ QGP T+ +T+ IR A+ E R
Sbjct: 42 TDPRLPDNPIVFANPAFQALTGYGEADLVGRNCRLLQGPGTDPQTVARIRAAVAEGREAR 101
Query: 94 VNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
V +LNY++DGT FW + VF E GR +F A Q+
Sbjct: 102 VAILNYRRDGTSFWNELFVCPVF-DEAGRLINFFASQI 138
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ L R +Q + DP LPD P+V+A+ AF LTGY ++VG+NCR L G TD +
Sbjct: 28 FFTVLERTRQPMIFTDPRLPDNPIVFANPAFQALTGYGEADLVGRNCRLLQGPGTDPQTV 87
Query: 303 YQVSIAISPYPKKKSIYMEYVR 324
++ A++ + + + Y R
Sbjct: 88 ARIRAAVAEGREARVAILNYRR 109
>gi|265992992|ref|ZP_06105549.1| signal transduction histidine kinase [Brucella melitensis bv. 3
str. Ether]
gi|262763862|gb|EEZ09894.1| signal transduction histidine kinase [Brucella melitensis bv. 3
str. Ether]
Length = 456
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
IT+P + +PIVFA+ FLK++G+ E++GRN R QG T+ + I+ AI E+PI
Sbjct: 3 ITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPI 62
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+++++NYKK G FW +S V +GR HFV+ Q+ +
Sbjct: 63 DIDIINYKKSGEAFWNRLHISPVHNA-NGRLQHFVSSQLDV 102
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 42/57 (73%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
++ +PHLPD P+V+A+ AFLKLTGY+ +EV+G+NCRFL G TD + + AI+
Sbjct: 1 MLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIA 57
>gi|254500449|ref|ZP_05112600.1| hypothetical protein SADFL11_485 [Labrenzia alexandrii DFL-11]
gi|222436520|gb|EEE43199.1| hypothetical protein SADFL11_485 [Labrenzia alexandrii DFL-11]
Length = 369
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 65/120 (54%), Gaps = 2/120 (1%)
Query: 18 LWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRR 77
+W+ ALD TI D G P+V+ + FL+ +G+S E +GRN QGP T+
Sbjct: 9 VWM-TALDAAQICITIADAKTPGRPLVYVNPAFLRQTGYSLEEAVGRNCGFLQGPDTDPH 67
Query: 78 TIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
T+ ++RE++ E I V +LNYKKDGTPFW +S + G FV Q + R+
Sbjct: 68 TVFQLRESLEAEMAICVEVLNYKKDGTPFWNALSISPI-KTATGDLVAFVGFQTDVTDRR 126
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 31/52 (59%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
+ D P P+VY + AFL+ TGY E VG+NC FL G DTD ++Q+
Sbjct: 21 ITIADAKTPGRPLVYVNPAFLRQTGYSLEEAVGRNCGFLQGPDTDPHTVFQL 72
>gi|390980872|pdb|3T50|A Chain A, X-Ray Structure Of The Lov Domain From The Lov-Hk Sensory
Protein From Brucella Abortus (Dark State).
gi|390980873|pdb|3T50|B Chain B, X-Ray Structure Of The Lov Domain From The Lov-Hk Sensory
Protein From Brucella Abortus (Dark State)
Length = 128
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 63/99 (63%), Gaps = 1/99 (1%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
IT+P + +PIVFA+ FLK++G+ E++GRN R QG T+ + I+ AI E+PI
Sbjct: 12 ITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPI 71
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+++++NYKK G FW +S V +GR HFV+ Q+
Sbjct: 72 DIDIINYKKSGEAFWNRLHISPVHNA-NGRLQHFVSSQL 109
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 42/56 (75%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
++ +PHLPD P+V+A+ AFLKLTGY+ +EV+G+NCRFL G TD + + AI+
Sbjct: 11 LITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIA 66
>gi|292654797|ref|YP_003534694.1| PAS-PAC-PAC sensing histidine kinase [Haloferax volcanii DS2]
gi|448293062|ref|ZP_21483306.1| PAS-PAC-PAC sensing histidine kinase [Haloferax volcanii DS2]
gi|291370941|gb|ADE03168.1| pas-pac-pac sensing his kinase [Haloferax volcanii DS2]
gi|445571562|gb|ELY26109.1| PAS-PAC-PAC sensing histidine kinase [Haloferax volcanii DS2]
Length = 858
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+D TIT+ P+ + + F +M+G+ R+E+IGRN R QG T+ + +
Sbjct: 149 AMDSATVGITITEAD-DDQPLTYVNDAFEEMTGYDRSEVIGRNCRFLQGDDTDPEAVETL 207
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
EA+ V L NY+KDGTPFW K+S V+ +DG THFV Q R +RN
Sbjct: 208 HEAVDAGESAAVGLTNYRKDGTPFWNDLKISPVY--DDGELTHFVGFQTDATVRHALRN 264
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 34/47 (72%)
Query: 263 DMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
D P+ Y +DAF ++TGYDR+EV+G+NCRFL G DTD + + A+
Sbjct: 165 DQPLTYVNDAFEEMTGYDRSEVIGRNCRFLQGDDTDPEAVETLHEAV 211
>gi|260756648|ref|ZP_05868996.1| signal transduction histidine kinase [Brucella abortus bv. 6 str.
870]
gi|260763317|ref|ZP_05875649.1| signal transduction histidine kinase [Brucella abortus bv. 2 str.
86/8/59]
gi|260882465|ref|ZP_05894079.1| signal transduction histidine kinase [Brucella abortus bv. 9 str.
C68]
gi|261216041|ref|ZP_05930322.1| signal transduction histidine kinase [Brucella abortus bv. 3 str.
Tulya]
gi|261220425|ref|ZP_05934706.1| signal transduction histidine kinase [Brucella ceti B1/94]
gi|261318734|ref|ZP_05957931.1| signal transduction histidine kinase [Brucella pinnipedialis B2/94]
gi|261750298|ref|ZP_05994007.1| signal transduction histidine kinase [Brucella suis bv. 5 str. 513]
gi|261753571|ref|ZP_05997280.1| signal transduction histidine kinase [Brucella suis bv. 3 str. 686]
gi|265986532|ref|ZP_06099089.1| signal transduction histidine kinase [Brucella pinnipedialis
M292/94/1]
gi|265989903|ref|ZP_06102460.1| signal transduction histidine kinase [Brucella melitensis bv. 1
str. Rev.1]
gi|265996224|ref|ZP_06108781.1| signal transduction histidine kinase [Brucella ceti M490/95/1]
gi|294853615|ref|ZP_06794287.1| PAS domain:PAS-associated domain:PAC domain-containing protein
[Brucella sp. NVSL 07-0026]
gi|260673738|gb|EEX60559.1| signal transduction histidine kinase [Brucella abortus bv. 2 str.
86/8/59]
gi|260676756|gb|EEX63577.1| signal transduction histidine kinase [Brucella abortus bv. 6 str.
870]
gi|260871993|gb|EEX79062.1| signal transduction histidine kinase [Brucella abortus bv. 9 str.
C68]
gi|260917648|gb|EEX84509.1| signal transduction histidine kinase [Brucella abortus bv. 3 str.
Tulya]
gi|260919009|gb|EEX85662.1| signal transduction histidine kinase [Brucella ceti B1/94]
gi|261297957|gb|EEY01454.1| signal transduction histidine kinase [Brucella pinnipedialis B2/94]
gi|261740051|gb|EEY27977.1| signal transduction histidine kinase [Brucella suis bv. 5 str. 513]
gi|261743324|gb|EEY31250.1| signal transduction histidine kinase [Brucella suis bv. 3 str. 686]
gi|262550521|gb|EEZ06682.1| signal transduction histidine kinase [Brucella ceti M490/95/1]
gi|263000572|gb|EEZ13262.1| signal transduction histidine kinase [Brucella melitensis bv. 1
str. Rev.1]
gi|264658729|gb|EEZ28990.1| signal transduction histidine kinase [Brucella pinnipedialis
M292/94/1]
gi|294819270|gb|EFG36270.1| PAS domain:PAS-associated domain:PAC domain-containing protein
[Brucella sp. NVSL 07-0026]
Length = 456
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
IT+P + +PIVFA+ FLK++G+ E++GRN R QG T+ + I+ AI E+PI
Sbjct: 3 ITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPI 62
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+++++NYKK G FW +S V +GR HFV+ Q+ +
Sbjct: 63 DIDIINYKKSGEAFWNRLHISPVHNA-NGRLQHFVSSQLDV 102
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 42/57 (73%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
++ +PHLPD P+V+A+ AFLKLTGY+ +EV+G+NCRFL G TD + + AI+
Sbjct: 1 MLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIA 57
>gi|302896206|ref|XP_003046983.1| hypothetical protein NECHADRAFT_95335 [Nectria haematococca mpVI
77-13-4]
gi|256727911|gb|EEU41270.1| hypothetical protein NECHADRAFT_95335 [Nectria haematococca mpVI
77-13-4]
Length = 656
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 67/110 (60%), Gaps = 3/110 (2%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L SF ++DPS SG+PI FAS F ++G+SR E++ N R+ QGP+T+R TI +R AI
Sbjct: 283 LKGSFCLSDPSRSGNPITFASDEFEDLTGYSRNEVLAHNCRLLQGPQTDRETISRMRSAI 342
Query: 87 REERPIEVNLLNYKKDGTPFW-MLFKMSLVFGKEDGRATHFVAVQVPIVS 135
+LN+KKDGTPFW +LF L+ G+ ++ Q+ + S
Sbjct: 343 WRNDECTELILNFKKDGTPFWDLLFLCPLL--DTAGKLKFYLGAQIDVSS 390
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 35/60 (58%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+K SF L DP P+ +ASD F LTGY RNEV+ NCR L G TD + ++ AI
Sbjct: 283 LKGSFCLSDPSRSGNPITFASDEFEDLTGYSRNEVLAHNCRLLQGPQTDRETISRMRSAI 342
>gi|221272077|sp|A5VUS1.2|LOVHK_BRUO2 RecName: Full=Blue-light-activated histidine kinase
Length = 489
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
IT+P + +PIVFA+ FLK++G+ E++GRN R QG T+ + I+ AI E+PI
Sbjct: 36 ITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVCAIKSAIAAEKPI 95
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+++++NYKK G FW +S V +GR HFV+ Q+ +
Sbjct: 96 DIDIINYKKSGEAFWNRLHISPVHNA-NGRLQHFVSSQLDV 135
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 42/57 (73%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
++ +PHLPD P+V+A+ AFLKLTGY+ +EV+G+NCRFL G TD + + AI+
Sbjct: 34 MLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVCAIKSAIA 90
>gi|224000493|ref|XP_002289919.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220975127|gb|EED93456.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 102
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 63/103 (61%), Gaps = 1/103 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
F ITDPS+ +PIV+AS FL ++G+++ E++GRN R QG T+R + IR+A+
Sbjct: 1 FIITDPSLHDNPIVYASNDFLNLTGYAQEEVLGRNCRFLQGTETSREKVAMIRKAVSVGE 60
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
V L+NY+ DGTPFW ++ + ED +F+ V V +
Sbjct: 61 DCNVTLVNYRSDGTPFWNSLFIAALRDAEDN-IVNFIGVIVKV 102
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 39/57 (68%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
F++ DP L D P+VYAS+ FL LTGY + EV+G+NCRFL G +T + + A+S
Sbjct: 1 FIITDPSLHDNPIVYASNDFLNLTGYAQEEVLGRNCRFLQGTETSREKVAMIRKAVS 57
>gi|261323168|ref|ZP_05962365.1| signal transduction histidine kinase [Brucella neotomae 5K33]
gi|261299148|gb|EEY02645.1| signal transduction histidine kinase [Brucella neotomae 5K33]
Length = 456
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
IT+P + +PIVFA+ FLK++G+ E++GRN R QG T+ + I+ AI E+PI
Sbjct: 3 ITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPI 62
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+++++NYKK G FW +S V +GR HFV+ Q+ +
Sbjct: 63 DIDIINYKKSGEAFWNRLHISPVHNA-NGRLQHFVSSQLDV 102
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 42/57 (73%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
++ +PHLPD P+V+A+ AFLKLTGY+ +EV+G+NCRFL G TD + + AI+
Sbjct: 1 MLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIA 57
>gi|261217205|ref|ZP_05931486.1| signal transduction histidine kinase [Brucella ceti M13/05/1]
gi|261320076|ref|ZP_05959273.1| signal transduction histidine kinase [Brucella ceti M644/93/1]
gi|260922294|gb|EEX88862.1| signal transduction histidine kinase [Brucella ceti M13/05/1]
gi|261292766|gb|EEX96262.1| signal transduction histidine kinase [Brucella ceti M644/93/1]
Length = 456
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
IT+P + +PIVFA+ FLK++G+ E++GRN R QG T+ + I+ AI E+PI
Sbjct: 3 ITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPI 62
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+++++NYKK G FW +S V +GR HFV+ Q+ +
Sbjct: 63 DIDIINYKKSGEAFWNRLHISPVHNA-NGRLQHFVSSQLDV 102
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 42/57 (73%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
++ +PHLPD P+V+A+ AFLKLTGY+ +EV+G+NCRFL G TD + + AI+
Sbjct: 1 MLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIA 57
>gi|62317555|ref|YP_223408.1| sensory box protein [Brucella abortus bv. 1 str. 9-941]
gi|376271195|ref|YP_005114240.1| PAS domain S-box-containing protein [Brucella abortus A13334]
gi|376276712|ref|YP_005152773.1| PAS domain S-box-containing protein [Brucella canis HSK A52141]
gi|384213098|ref|YP_005602181.1| PAS domain S-box-containing protein [Brucella melitensis M5-90]
gi|384410198|ref|YP_005598818.1| PAS domain S-box-containing protein [Brucella melitensis M28]
gi|62197748|gb|AAX76047.1| sensory box protein [Brucella abortus bv. 1 str. 9-941]
gi|326410745|gb|ADZ67809.1| PAS domain S-box-containing protein [Brucella melitensis M28]
gi|326554038|gb|ADZ88677.1| PAS domain S-box-containing protein [Brucella melitensis M5-90]
gi|363402367|gb|AEW19336.1| PAS domain S-box-containing protein [Brucella abortus A13334]
gi|363405086|gb|AEW15380.1| PAS domain S-box-containing protein [Brucella canis HSK A52141]
Length = 458
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
IT+P + +PIVFA+ FLK++G+ E++GRN R QG T+ + I+ AI E+PI
Sbjct: 5 ITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPI 64
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+++++NYKK G FW +S V +GR HFV+ Q+ +
Sbjct: 65 DIDIINYKKSGEAFWNRLHISPVHNA-NGRLQHFVSSQLDV 104
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 42/57 (73%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
++ +PHLPD P+V+A+ AFLKLTGY+ +EV+G+NCRFL G TD + + AI+
Sbjct: 3 MLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIA 59
>gi|170750900|ref|YP_001757160.1| putative PAS/PAC sensor protein [Methylobacterium radiotolerans JCM
2831]
gi|170657422|gb|ACB26477.1| putative PAS/PAC sensor protein [Methylobacterium radiotolerans JCM
2831]
Length = 164
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 62/101 (61%), Gaps = 1/101 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
ITDP+ +PIVF + FLK++G++R E++GRN R QGP T + +R AIR E I
Sbjct: 38 ITDPAQHDNPIVFVNDAFLKLTGYTRMEVVGRNCRFLQGPDTEAAAVDRLRAAIRREEDI 97
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
V+LLNY+KDG+ F + V E GR +F A Q+ +
Sbjct: 98 RVDLLNYRKDGSTFQNALYVGPV-RDEAGRVVYFFASQLDV 137
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 40/59 (67%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ ++ DP D P+V+ +DAFLKLTGY R EVVG+NCRFL G DT+ + ++ AI
Sbjct: 33 RMPMIITDPAQHDNPIVFVNDAFLKLTGYTRMEVVGRNCRFLQGPDTEAAAVDRLRAAI 91
>gi|23500332|ref|NP_699772.1| sensory box protein [Brucella suis 1330]
gi|83269536|ref|YP_418827.1| PAS domain-containing protein [Brucella melitensis biovar Abortus
2308]
gi|161620650|ref|YP_001594536.1| PAS domain-containing protein [Brucella canis ATCC 23365]
gi|163844740|ref|YP_001622395.1| PAS domain-containing protein [Brucella suis ATCC 23445]
gi|225686374|ref|YP_002734346.1| PAS domain S-box-containing protein [Brucella melitensis ATCC
23457]
gi|376278554|ref|YP_005108587.1| sensory box protein [Brucella suis VBI22]
gi|384223115|ref|YP_005614280.1| sensory box protein [Brucella suis 1330]
gi|384446725|ref|YP_005660943.1| sensory transduction histidine kinase [Brucella melitensis NI]
gi|23463946|gb|AAN33777.1| sensory box protein [Brucella suis 1330]
gi|82939810|emb|CAJ12818.1| PAS domain:PAS-associated C-terminal domain:PAC motif [Brucella
melitensis biovar Abortus 2308]
gi|161337461|gb|ABX63765.1| PAS domain S-box [Brucella canis ATCC 23365]
gi|163675463|gb|ABY39573.1| PAS domain S-box [Brucella suis ATCC 23445]
gi|225642479|gb|ACO02392.1| PAS domain S-box-containing protein [Brucella melitensis ATCC
23457]
gi|343384563|gb|AEM20054.1| sensory box protein [Brucella suis 1330]
gi|349744722|gb|AEQ10264.1| sensory transduction histidine kinase [Brucella melitensis NI]
gi|358259992|gb|AEU07725.1| sensory box protein [Brucella suis VBI22]
Length = 463
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
IT+P + +PIVFA+ FLK++G+ E++GRN R QG T+ + I+ AI E+PI
Sbjct: 10 ITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPI 69
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+++++NYKK G FW +S V +GR HFV+ Q+ +
Sbjct: 70 DIDIINYKKSGEAFWNRLHISPVHNA-NGRLQHFVSSQLDV 109
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 42/57 (73%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
++ +PHLPD P+V+A+ AFLKLTGY+ +EV+G+NCRFL G TD + + AI+
Sbjct: 8 MLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIA 64
>gi|312961435|ref|ZP_07775938.1| PAS [Pseudomonas fluorescens WH6]
gi|311284330|gb|EFQ62908.1| PAS [Pseudomonas fluorescens WH6]
Length = 519
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 69/109 (63%), Gaps = 2/109 (1%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+ +TDP+ +PI+FA++ FL ++G+ + E+IGRN R QGP T++ + ++ A+
Sbjct: 28 AMIVTDPAQPDNPIIFANQAFLALTGYEQDEVIGRNCRFLQGPHTDKDALRHVQRALERH 87
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
+ V ++NY+KDG+ FW ++ +F E G+ +F A Q+ VSR+H
Sbjct: 88 HEVCVEVINYRKDGSTFWNELFLAPLF-NERGQLVYFFASQLD-VSRRH 134
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 40/57 (70%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ ++ DP PD P+++A+ AFL LTGY+++EV+G+NCRFL G TD L V A+
Sbjct: 28 AMIVTDPAQPDNPIIFANQAFLALTGYEQDEVIGRNCRFLQGPHTDKDALRHVQRAL 84
>gi|428176404|gb|EKX45289.1| hypothetical protein GUITHDRAFT_71576 [Guillardia theta CCMP2712]
Length = 122
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 63/102 (61%), Gaps = 10/102 (9%)
Query: 6 GLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN 65
G+IE S N R +W H+ + + D + PIVFA++ F ++ ++R EI+GRN
Sbjct: 10 GIIEMS-NAR--VWQHQVV-------CVADARLPDCPIVFANQRFFDLTQYTREEILGRN 59
Query: 66 GRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFW 107
R QGP T+R + EIREAI+ RP+ +LNYKKDGT FW
Sbjct: 60 CRFLQGPDTDRDDVTEIREAIKAGRPVSSCILNYKKDGTLFW 101
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%)
Query: 252 QSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISP 311
Q + D LPD P+V+A+ F LT Y R E++G+NCRFL G DTD + ++ AI
Sbjct: 23 QVVCVADARLPDCPIVFANQRFFDLTQYTREEILGRNCRFLQGPDTDRDDVTEIREAIKA 82
Query: 312 YPKKKSIYMEY 322
S + Y
Sbjct: 83 GRPVSSCILNY 93
>gi|448308287|ref|ZP_21498165.1| bacterio-opsin activator [Natronorubrum bangense JCM 10635]
gi|445594293|gb|ELY48459.1| bacterio-opsin activator [Natronorubrum bangense JCM 10635]
Length = 646
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 86/160 (53%), Gaps = 15/160 (9%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++E P TI+DP + +P+V+ + + M+G+S E++GRN R QG ++ I E+
Sbjct: 144 AINEAPVGITISDPDLEDNPLVYVNDAYRDMTGYSFDEVVGRNCRFLQGEDSSEEAIAEM 203
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM--- 139
AI E+ P+ V L NY+KDGTPFW ++ V +DG TH+V Q + +RK
Sbjct: 204 AAAIDEDYPVTVELKNYRKDGTPFWNEVTIAPVR-DDDGTVTHYVGFQNDVTARKRAELE 262
Query: 140 ---RNSGMSYSED---GGGSRLREIVFGSCRR-----EVC 168
R + + Y D G + ++V GS R EVC
Sbjct: 263 LERRTAELEYILDRVEGLIQDVTDVVAGSTTRSELEAEVC 302
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDT 297
+ DP L D P+VY +DA+ +TGY +EVVG+NCRFL G D+
Sbjct: 152 ITISDPDLEDNPLVYVNDAYRDMTGYSFDEVVGRNCRFLQGEDS 195
>gi|383460060|gb|AFH34990.1| YF1 [Expression vector pDusk]
gi|383460065|gb|AFH34994.1| YF1 [Expression vector pDawn]
Length = 380
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 70/121 (57%), Gaps = 3/121 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +ALD + ITDP++ +PIV+ ++GF++M+G+ EI+G+N R QG T+ +
Sbjct: 16 IKKALDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEV 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
IR A++ + P+ V + NYKKDGT FW + + E T+FV +Q I +
Sbjct: 76 DNIRTALQNKEPVTVQIQNYKKDGTMFWNELNIDPM---EIEDKTYFVGIQNDITEHQQT 132
Query: 140 R 140
+
Sbjct: 133 Q 133
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 40/64 (62%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
+L ++ V+ DP L D P+VY + F+++TGY+ E++G+NCRFL G TD + +
Sbjct: 19 ALDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNI 78
Query: 306 SIAI 309
A+
Sbjct: 79 RTAL 82
>gi|424891967|ref|ZP_18315547.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WSM2297]
gi|424893803|ref|ZP_18317383.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WSM2297]
gi|393183248|gb|EJC83285.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WSM2297]
gi|393185084|gb|EJC85121.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WSM2297]
Length = 345
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
+TD PIV A++ FL+++G+S E++GRN R QGP T+ + EIR I +ER
Sbjct: 40 MVVTDARRPDLPIVLANKSFLELTGYSADEVLGRNCRFLQGPATSPIAVAEIRAGIADER 99
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
V +LNYKK+G PFW +S + G +DGR +F Q+
Sbjct: 100 EASVEILNYKKNGEPFWNRLHLSPIHG-DDGRILYFFGSQI 139
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 41/66 (62%)
Query: 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQ 304
I+ R + V+ D PD+P+V A+ +FL+LTGY +EV+G+NCRFL G T + +
Sbjct: 31 IAFERTRMPMVVTDARRPDLPIVLANKSFLELTGYSADEVLGRNCRFLQGPATSPIAVAE 90
Query: 305 VSIAIS 310
+ I+
Sbjct: 91 IRAGIA 96
>gi|188583311|ref|YP_001926756.1| multi-sensor hybrid histidine kinase [Methylobacterium populi
BJ001]
gi|418057848|ref|ZP_12695833.1| multi-sensor hybrid histidine kinase [Methylobacterium extorquens
DSM 13060]
gi|179346809|gb|ACB82221.1| multi-sensor hybrid histidine kinase [Methylobacterium populi
BJ001]
gi|373568664|gb|EHP94608.1| multi-sensor hybrid histidine kinase [Methylobacterium extorquens
DSM 13060]
Length = 888
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 67/110 (60%), Gaps = 2/110 (1%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
IT+P +PIVF + F +++G++R EI+GRN R QGP T+ T+ IREAI R
Sbjct: 49 MVITNPRRPDNPIVFVNDAFCRLTGYAREEILGRNCRFLQGPETDPETVRLIREAIVAPR 108
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI-VSRKHM 139
IE+++ N+KKDGTPFW ++ V G +F A Q+ + V R+ +
Sbjct: 109 SIEIDIRNHKKDGTPFWNRLLLAPV-NDAGGDLAYFFASQLDVTVERERL 157
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 39/59 (66%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ V+ +P PD P+V+ +DAF +LTGY R E++G+NCRFL G +TD + + AI
Sbjct: 46 RMPMVITNPRRPDNPIVFVNDAFCRLTGYAREEILGRNCRFLQGPETDPETVRLIREAI 104
>gi|291566948|dbj|BAI89220.1| hypothetical protein [Arthrospira platensis NIES-39]
Length = 1276
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 73/126 (57%), Gaps = 1/126 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++ + ITD + S + ++FA+ GF K++G+SR ++IGRN R QG ++ + + E+
Sbjct: 338 AINSSRNGIIITDATDSDNRVIFANSGFEKITGYSRHQVIGRNCRFLQGKDSDPKALAEL 397
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R AI + R + L NY+ DG+ FW +S V+ + G THF+ +Q I K +
Sbjct: 398 RNAIEQGRECNIELQNYRPDGSSFWNELSISPVYNSQ-GFLTHFIGIQTDISDHKQAEVT 456
Query: 143 GMSYSE 148
+S S+
Sbjct: 457 LLSKSQ 462
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ ++ D D +++A+ F K+TGY R++V+G+NCRFL G D+D L ++ AI
Sbjct: 343 RNGIIITDATDSDNRVIFANSGFEKITGYSRHQVIGRNCRFLQGKDSDPKALAELRNAI 401
>gi|225629082|ref|ZP_03787115.1| PAS domain S-box-containing protein [Brucella ceti str. Cudo]
gi|237817103|ref|ZP_04596095.1| PAS domain S-box-containing protein [Brucella abortus str. 2308 A]
gi|225615578|gb|EEH12627.1| PAS domain S-box-containing protein [Brucella ceti str. Cudo]
gi|237787916|gb|EEP62132.1| PAS domain S-box-containing protein [Brucella abortus str. 2308 A]
Length = 496
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
IT+P + +PIVFA+ FLK++G+ E++GRN R QG T+ + I+ AI E+PI
Sbjct: 43 ITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPI 102
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+++++NYKK G FW +S V +GR HFV+ Q+ +
Sbjct: 103 DIDIINYKKSGEAFWNRLHISPVHNA-NGRLQHFVSSQLDV 142
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 42/56 (75%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
++ +PHLPD P+V+A+ AFLKLTGY+ +EV+G+NCRFL G TD + + AI+
Sbjct: 42 LITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIA 97
>gi|256015365|ref|YP_003105374.1| sensory box protein, light activated LOV domain-containing protein
[Brucella microti CCM 4915]
gi|255998025|gb|ACU49712.1| sensory box protein, light activated LOV domain protein [Brucella
microti CCM 4915]
Length = 489
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
IT+P + +PIVFA+ FLK++G+ E++GRN R QG T+ + I+ AI E+PI
Sbjct: 36 ITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPI 95
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+++++NYKK G FW +S V +GR HFV+ Q+ +
Sbjct: 96 DIDIINYKKSGEAFWNRLHISPVHNA-NGRLQHFVSSQLDV 135
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 42/57 (73%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
++ +PHLPD P+V+A+ AFLKLTGY+ +EV+G+NCRFL G TD + + AI+
Sbjct: 34 MLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIA 90
>gi|189022810|ref|YP_001932550.1| Sensory transduction histidine kinase [Brucella abortus S19]
gi|260544791|ref|ZP_05820612.1| sensory transduction histidine kinase [Brucella abortus NCTC 8038]
gi|221272017|sp|B2SB67.1|LOVHK_BRUA1 RecName: Full=Blue-light-activated histidine kinase
gi|189021384|gb|ACD74105.1| Sensory transduction histidine kinase [Brucella abortus S19]
gi|260098062|gb|EEW81936.1| sensory transduction histidine kinase [Brucella abortus NCTC 8038]
Length = 489
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
IT+P + +PIVFA+ FLK++G+ E++GRN R QG T+ + I+ AI E+PI
Sbjct: 36 ITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPI 95
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+++++NYKK G FW +S V +GR HFV+ Q+ +
Sbjct: 96 DIDIINYKKSGEAFWNRLHISPVHNA-NGRLQHFVSSQLDV 135
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 42/57 (73%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
++ +PHLPD P+V+A+ AFLKLTGY+ +EV+G+NCRFL G TD + + AI+
Sbjct: 34 MLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIA 90
>gi|428304763|ref|YP_007141588.1| multi-sensor signal transduction histidine kinase [Crinalium
epipsammum PCC 9333]
gi|428246298|gb|AFZ12078.1| multi-sensor signal transduction histidine kinase [Crinalium
epipsammum PCC 9333]
Length = 811
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 72/120 (60%), Gaps = 2/120 (1%)
Query: 18 LWVHE-ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNR 76
LW++E + TITD + +PI++ + F ++GF E++GRN + QG T+
Sbjct: 24 LWLYERGIAATSCGVTITDATQPHNPIIYCNPAFESITGFPPEEVLGRNCKFLQGKDTDL 83
Query: 77 RTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+ +IR+A+R ++ +V L NY+K+GTPFW K+S V + +G T+F+ VQ I SR
Sbjct: 84 AVVEQIRQALRTKQECQVVLKNYRKNGTPFWNELKISPVCDR-NGNLTNFIGVQTDITSR 142
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%)
Query: 256 LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYPKK 315
+ D P P++Y + AF +TG+ EV+G+NC+FL G DTD V+ Q+ A+ +
Sbjct: 40 ITDATQPHNPIIYCNPAFESITGFPPEEVLGRNCKFLQGKDTDLAVVEQIRQALRTKQEC 99
Query: 316 KSIYMEY 322
+ + Y
Sbjct: 100 QVVLKNY 106
>gi|409992366|ref|ZP_11275561.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
[Arthrospira platensis str. Paraca]
gi|409936779|gb|EKN78248.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
[Arthrospira platensis str. Paraca]
Length = 1276
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 73/126 (57%), Gaps = 1/126 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++ + ITD + S + ++FA+ GF K++G+SR ++IGRN R QG ++ + + E+
Sbjct: 338 AINSSRNGIIITDATDSDNRVIFANSGFEKITGYSRHQVIGRNCRFLQGKDSDPKALAEL 397
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R AI + R + L NY+ DG+ FW +S V+ + G THF+ +Q I K +
Sbjct: 398 RNAIEQGRECNIELQNYRPDGSSFWNELSISPVYNSQ-GFLTHFIGIQTDISDHKQAEVT 456
Query: 143 GMSYSE 148
+S S+
Sbjct: 457 LLSKSQ 462
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ ++ D D +++A+ F K+TGY R++V+G+NCRFL G D+D L ++ AI
Sbjct: 343 RNGIIITDATDSDNRVIFANSGFEKITGYSRHQVIGRNCRFLQGKDSDPKALAELRNAI 401
>gi|17989024|ref|NP_541657.1| sensory transduction histidine kinase [Brucella melitensis bv. 1
str. 16M]
gi|260564680|ref|ZP_05835165.1| sensory transduction histidine kinase [Brucella melitensis bv. 1
str. 16M]
gi|261756795|ref|ZP_06000504.1| sensory transduction histidine kinase [Brucella sp. F5/99]
gi|265999105|ref|ZP_05465017.2| sensory transduction histidine kinase [Brucella melitensis bv. 2
str. 63/9]
gi|297249594|ref|ZP_06933295.1| PAS domain:PAS-associated domain:PAC domain-containing protein
[Brucella abortus bv. 5 str. B3196]
gi|340792373|ref|YP_004757837.1| sensory box protein, light activated LOV domain-containing protein
[Brucella pinnipedialis B2/94]
gi|423168551|ref|ZP_17155253.1| blue-light-activated histidine kinase [Brucella abortus bv. 1 str.
NI435a]
gi|423172016|ref|ZP_17158690.1| blue-light-activated histidine kinase [Brucella abortus bv. 1 str.
NI474]
gi|423174253|ref|ZP_17160923.1| blue-light-activated histidine kinase [Brucella abortus bv. 1 str.
NI486]
gi|423176130|ref|ZP_17162796.1| blue-light-activated histidine kinase [Brucella abortus bv. 1 str.
NI488]
gi|423181445|ref|ZP_17168085.1| blue-light-activated histidine kinase [Brucella abortus bv. 1 str.
NI010]
gi|423184578|ref|ZP_17171214.1| blue-light-activated histidine kinase [Brucella abortus bv. 1 str.
NI016]
gi|423187728|ref|ZP_17174341.1| blue-light-activated histidine kinase [Brucella abortus bv. 1 str.
NI021]
gi|423190149|ref|ZP_17176758.1| blue-light-activated histidine kinase [Brucella abortus bv. 1 str.
NI259]
gi|81850374|sp|Q8YC53.1|LOVHK_BRUME RecName: Full=Blue-light-activated histidine kinase; AltName:
Full=BM-LOV-histidine kinase; Short=BM-LOV-HK
gi|221272074|sp|Q2YKK7.2|LOVHK_BRUA2 RecName: Full=Blue-light-activated histidine kinase; AltName:
Full=BA-LOV-histidine kinase; Short=BA-LOV-HK
gi|221272075|sp|Q577Y7.2|LOVHK_BRUAB RecName: Full=Blue-light-activated histidine kinase
gi|221272076|sp|A9MBM8.2|LOVHK_BRUC2 RecName: Full=Blue-light-activated histidine kinase
gi|221272078|sp|A9WYQ7.2|LOVHK_BRUSI RecName: Full=Blue-light-activated histidine kinase
gi|221272079|sp|Q8FW73.2|LOVHK_BRUSU RecName: Full=Blue-light-activated histidine kinase
gi|17984864|gb|AAL53921.1| sensory transduction histidine kinase [Brucella melitensis bv. 1
str. 16M]
gi|260152323|gb|EEW87416.1| sensory transduction histidine kinase [Brucella melitensis bv. 1
str. 16M]
gi|261736779|gb|EEY24775.1| sensory transduction histidine kinase [Brucella sp. F5/99]
gi|263092221|gb|EEZ16518.1| sensory transduction histidine kinase [Brucella melitensis bv. 2
str. 63/9]
gi|297173463|gb|EFH32827.1| PAS domain:PAS-associated domain:PAC domain-containing protein
[Brucella abortus bv. 5 str. B3196]
gi|340560832|gb|AEK56069.1| sensory box protein, light activated LOV domain protein [Brucella
pinnipedialis B2/94]
gi|374536438|gb|EHR07958.1| blue-light-activated histidine kinase [Brucella abortus bv. 1 str.
NI474]
gi|374537757|gb|EHR09267.1| blue-light-activated histidine kinase [Brucella abortus bv. 1 str.
NI435a]
gi|374540254|gb|EHR11756.1| blue-light-activated histidine kinase [Brucella abortus bv. 1 str.
NI486]
gi|374546035|gb|EHR17495.1| blue-light-activated histidine kinase [Brucella abortus bv. 1 str.
NI010]
gi|374546878|gb|EHR18337.1| blue-light-activated histidine kinase [Brucella abortus bv. 1 str.
NI016]
gi|374554732|gb|EHR26142.1| blue-light-activated histidine kinase [Brucella abortus bv. 1 str.
NI488]
gi|374555532|gb|EHR26941.1| blue-light-activated histidine kinase [Brucella abortus bv. 1 str.
NI021]
gi|374556189|gb|EHR27594.1| blue-light-activated histidine kinase [Brucella abortus bv. 1 str.
NI259]
Length = 489
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
IT+P + +PIVFA+ FLK++G+ E++GRN R QG T+ + I+ AI E+PI
Sbjct: 36 ITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPI 95
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+++++NYKK G FW +S V +GR HFV+ Q+ +
Sbjct: 96 DIDIINYKKSGEAFWNRLHISPVHNA-NGRLQHFVSSQLDV 135
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 42/57 (73%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
++ +PHLPD P+V+A+ AFLKLTGY+ +EV+G+NCRFL G TD + + AI+
Sbjct: 34 MLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIA 90
>gi|448659232|ref|ZP_21683200.1| HTR-like protein [Haloarcula californiae ATCC 33799]
gi|445760734|gb|EMA11991.1| HTR-like protein [Haloarcula californiae ATCC 33799]
Length = 748
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 6/162 (3%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++E P +T P PI +A+R FL+++G++ +E+ GRN R QG T + +
Sbjct: 260 AMNEAPIGIILTGPKQDDTPITYANRRFLELTGYTESEVRGRNCRFLQGEATESEPVDAM 319
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R AI E P+ V L NY+KDGT FW ++ V +DG ++V Q I RK
Sbjct: 320 RAAIDEGEPVSVELRNYRKDGTMFWNQVSIAPVR-DDDGTVVNYVGFQRDITERKEHERR 378
Query: 143 GMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSD 184
+ SE +++++ R EV + VL L+++
Sbjct: 379 LKALSE-----SVQDLLQADTREEVAEIGVETARTVLGLEAN 415
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 34/56 (60%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+L P D P+ YA+ FL+LTGY +EV G+NCRFL G T++ + + AI
Sbjct: 268 IILTGPKQDDTPITYANRRFLELTGYTESEVRGRNCRFLQGEATESEPVDAMRAAI 323
>gi|260568124|ref|ZP_05838593.1| sensory transduction histidine kinase [Brucella suis bv. 4 str. 40]
gi|260154789|gb|EEW89870.1| sensory transduction histidine kinase [Brucella suis bv. 4 str. 40]
Length = 489
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
IT+P + +PIVFA+ FLK++G+ E++GRN R QG T+ + I+ AI E+PI
Sbjct: 36 ITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPI 95
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+++++NYKK G FW +S V +GR HFV+ Q+ +
Sbjct: 96 DIDIINYKKSGEAFWNRLHISPVHNA-NGRLQHFVSSQLDV 135
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 42/57 (73%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
++ +PHLPD P+V+A+ AFLKLTGY+ +EV+G+NCRFL G TD + + AI+
Sbjct: 34 MLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIA 90
>gi|448573345|ref|ZP_21640929.1| bacterio-opsin activator [Haloferax lucentense DSM 14919]
gi|445719110|gb|ELZ70793.1| bacterio-opsin activator [Haloferax lucentense DSM 14919]
Length = 658
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 61/116 (52%), Gaps = 1/116 (0%)
Query: 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
+A+DE P T+ D S+ P+V+ + F M+G+S +GRN R QGP T+ +
Sbjct: 136 EQAIDEAPVGITVADCSLPDRPLVYVNEAFETMTGYSADAALGRNCRYLQGPNTDPERVA 195
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+R AI E V LLNY+ +G FW ++ + G DG TH+V Q I R
Sbjct: 196 ALRRAIEAEESASVELLNYRANGETFWNRVDVAPLSGP-DGEVTHYVGFQTDITER 250
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+ D LPD P+VY ++AF +TGY + +G+NCR+L G +TD
Sbjct: 146 ITVADCSLPDRPLVYVNEAFETMTGYSADAALGRNCRYLQGPNTD 190
>gi|448597599|ref|ZP_21654524.1| bacterio-opsin activator [Haloferax alexandrinus JCM 10717]
gi|445739060|gb|ELZ90569.1| bacterio-opsin activator [Haloferax alexandrinus JCM 10717]
Length = 658
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 61/116 (52%), Gaps = 1/116 (0%)
Query: 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
+A+DE P T+ D S+ P+V+ + F M+G+S +GRN R QGP T+ +
Sbjct: 136 EQAIDEAPVGITVADCSLPDRPLVYVNEAFETMTGYSADAALGRNCRYLQGPNTDPERVA 195
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+R AI E V LLNY+ +G FW ++ + G DG TH+V Q I R
Sbjct: 196 ALRRAIEAEESASVELLNYRANGETFWNRVDVAPLSGP-DGEVTHYVGFQTDITER 250
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+ D LPD P+VY ++AF +TGY + +G+NCR+L G +TD
Sbjct: 146 ITVADCSLPDRPLVYVNEAFETMTGYSADAALGRNCRYLQGPNTD 190
>gi|46203570|ref|ZP_00051334.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
magnetotacticum MS-1]
Length = 425
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 59/94 (62%), Gaps = 2/94 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+ +P + DP PIVF ++ FL+M+G++R E+IGRN R+ QGP T+ M +
Sbjct: 37 AMTRMP--MVVVDPHRDDCPIVFVNQAFLEMTGYTREEVIGRNCRLLQGPDTDPAARMAV 94
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVF 116
REAI + R I + +LNY+KDG FW +S V+
Sbjct: 95 REAIAQRRDIAIEILNYRKDGASFWNALFVSPVY 128
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S + ++ + V++DPH D P+V+ + AFL++TGY R EV+G+NCR L G DTD
Sbjct: 29 SDIFFAAVAMTRMPMVVVDPHRDDCPIVFVNQAFLEMTGYTREEVIGRNCRLLQGPDTDP 88
Query: 300 TVLYQVSIAISPYPKKKSIYMEYV 323
V AI+ +++ I +E +
Sbjct: 89 AARMAVREAIA---QRRDIAIEIL 109
>gi|428311734|ref|YP_007122711.1| PAS domain-containing protein [Microcoleus sp. PCC 7113]
gi|428253346|gb|AFZ19305.1| PAS domain S-box [Microcoleus sp. PCC 7113]
Length = 483
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 63/104 (60%), Gaps = 1/104 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
I D + G P+++ + F +++G+S AE++G N R QG T++ + ++R AI+
Sbjct: 161 IADTRLPGMPLIYVNPAFEQITGYSAAEVLGYNCRFLQGKETSQPAVAQLRAAIKAGEHC 220
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
V LLNY+KDGTPFW +S ++ ED + THFV +Q I R
Sbjct: 221 AVTLLNYRKDGTPFWNELTISPIY-DEDKKLTHFVGIQSDISDR 263
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
V+ D LP MP++Y + AF ++TGY EV+G NCRFL G +T + Q+ AI
Sbjct: 160 VIADTRLPGMPLIYVNPAFEQITGYSAAEVLGYNCRFLQGKETSQPAVAQLRAAI 214
>gi|449135813|ref|ZP_21771246.1| signal transduction histidine kinase with CheB and CheR activity
[Rhodopirellula europaea 6C]
gi|448885516|gb|EMB15954.1| signal transduction histidine kinase with CheB and CheR activity
[Rhodopirellula europaea 6C]
Length = 1739
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+D + F I D PIV+A++GF ++GF+ EI+GRN R QGP+T+ + I
Sbjct: 985 AIDAASNGFVIVDAQAKDTPIVYANQGFFNLTGFAPEEIVGRNCRFLQGPQTDPSNVDMI 1044
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
R+AI++++ V LLNY++DG+ F+ ++ + + G THFV VQ
Sbjct: 1045 RDAIQKKQECRVTLLNYRRDGSQFYNDLIITPIQDSQ-GVVTHFVGVQ 1091
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYP 313
FV++D D P+VYA+ F LTG+ E+VG+NCRFL G TD + + + AI
Sbjct: 993 FVIVDAQAKDTPIVYANQGFFNLTGFAPEEIVGRNCRFLQGPQTDPSNVDMIRDAIQKKQ 1052
Query: 314 KKKSIYMEYVR 324
+ + + Y R
Sbjct: 1053 ECRVTLLNYRR 1063
>gi|154304988|ref|XP_001552897.1| hypothetical protein BC1G_08584 [Botryotinia fuckeliana B05.10]
Length = 593
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 93/183 (50%), Gaps = 37/183 (20%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L D F +TDP + +PIVFAS GF+ ++G+SR++II RN R QG T+R+ +R +I
Sbjct: 253 LGDCFCLTDPRRADNPIVFASDGFVSVTGYSRSDIIPRNCRFLQGSFTDRQATKRLRTSI 312
Query: 87 RE-ERPIEVNLLNYKKDGTPFWMLFKMS-LVFGKEDGRATHFVAVQVPIVSRKHMRNSGM 144
E +E+ LLNY+K+G PFW L +S L+ G D R F+ Q+ + H R
Sbjct: 313 ENCEETVEL-LLNYRKNGDPFWNLLYVSPLLDGNGDVR--FFLGGQINCSTTIHSRT--- 366
Query: 145 SYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIEDSCEASDLEKRKA 204
D+ R+L+L+ +DTG IE S + + +++
Sbjct: 367 -----------------------------DVLRILSLNDEDTGSFIEGSNKTPSVRSKES 397
Query: 205 ATA 207
TA
Sbjct: 398 NTA 400
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 36/56 (64%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
F L DP D P+V+ASD F+ +TGY R++++ +NCRFL G TD ++ +I
Sbjct: 257 FCLTDPRRADNPIVFASDGFVSVTGYSRSDIIPRNCRFLQGSFTDRQATKRLRTSI 312
>gi|299473575|emb|CBN77970.1| aureochrome 3 [Ectocarpus siliculosus]
Length = 275
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 70/112 (62%), Gaps = 1/112 (0%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+AL +F ITDP++ +PIVFAS+GFL+++G++ +++GRN R QGP T+ + + +
Sbjct: 127 KALQTAQQNFVITDPTLPDNPIVFASQGFLELTGYTLDQVLGRNCRFLQGPDTDPKAVEK 186
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
IR+AI + V L NY+ DG FW F ++ + E G ++V VQ +
Sbjct: 187 IRKAIEKGMDTSVCLRNYRVDGAMFWNQFFIAALRDSE-GTVINYVGVQCKV 237
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 48/68 (70%)
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTV 301
SL +L +Q+FV+ DP LPD P+V+AS FL+LTGY ++V+G+NCRFL G DTD
Sbjct: 124 SLVKALQTAQQNFVITDPTLPDNPIVFASQGFLELTGYTLDQVLGRNCRFLQGPDTDPKA 183
Query: 302 LYQVSIAI 309
+ ++ AI
Sbjct: 184 VEKIRKAI 191
>gi|433431088|ref|ZP_20407593.1| bacterio-opsin activator, partial [Haloferax sp. BAB2207]
gi|432194173|gb|ELK50824.1| bacterio-opsin activator, partial [Haloferax sp. BAB2207]
Length = 575
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 61/116 (52%), Gaps = 1/116 (0%)
Query: 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
+A+DE P T+ D S+ P+V+ + F M+G+S +GRN R QGP T+ +
Sbjct: 53 EQAIDEAPVGITVADCSLPDRPLVYVNEAFETMTGYSADAALGRNCRYLQGPNTDPERVA 112
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+R AI E V LLNY+ +G FW ++ + G DG TH+V Q I R
Sbjct: 113 ALRRAIEAEESASVELLNYRANGETFWNRVDVAPLSGP-DGEVTHYVGFQTDITER 167
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+ D LPD P+VY ++AF +TGY + +G+NCR+L G +TD
Sbjct: 63 ITVADCSLPDRPLVYVNEAFETMTGYSADAALGRNCRYLQGPNTD 107
>gi|383620603|ref|ZP_09947009.1| bacterio-opsin activator [Halobiforma lacisalsi AJ5]
gi|448697960|ref|ZP_21698838.1| bacterio-opsin activator [Halobiforma lacisalsi AJ5]
gi|445781326|gb|EMA32187.1| bacterio-opsin activator [Halobiforma lacisalsi AJ5]
Length = 628
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 70/117 (59%), Gaps = 1/117 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P +I+DP +P+V+ + + +++G+S +++GRN R+ QG ++ I +
Sbjct: 131 AIDEAPVGISISDPDREDNPLVYINDAYQEITGYSYDDVVGRNCRLLQGEDSSEEAIARM 190
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
+A+ E+ P+ V + NY+KDGT FW ++ V +DG T++V Q I +RK
Sbjct: 191 AKAVDEDYPVTVEIKNYRKDGTEFWNEVTIAPVR-NDDGEVTNYVGFQNDITARKEA 246
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 258 DPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISP-YP 313
DP D P+VY +DA+ ++TGY ++VVG+NCR L G D+ + +++ A+ YP
Sbjct: 143 DPDREDNPLVYINDAYQEITGYSYDDVVGRNCRLLQGEDSSEEAIARMAKAVDEDYP 199
>gi|354569046|ref|ZP_08988205.1| multi-sensor signal transduction histidine kinase [Fischerella sp.
JSC-11]
gi|353539050|gb|EHC08546.1| multi-sensor signal transduction histidine kinase [Fischerella sp.
JSC-11]
Length = 1039
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 1/110 (0%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88
+ I D + PI++A+ F ++G+S E+IGRN R QG TN+ I E+R AI++
Sbjct: 561 NGIVICDARLPNLPIIYANPAFEYITGYSPEEVIGRNFRFLQGNDTNQPEIQELRNAIQQ 620
Query: 89 ERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
+ V L NY+KDG+ FW +S VF DG TH+V +Q I RK
Sbjct: 621 AKNCTVILRNYRKDGSLFWNELSISPVFDA-DGNCTHYVGIQNDITERKQ 669
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 58/99 (58%), Gaps = 1/99 (1%)
Query: 40 GHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNY 99
G IV+ + F ++SG+S AE++G+ R+ QG ++R + IR A++ P+ L+NY
Sbjct: 184 GPQIVYVNEAFTRISGWSSAEVVGKTPRILQGELSDRTQLDRIRTALQNCLPVRAELINY 243
Query: 100 KKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
K+G+ +W+ + + G+ THFV++Q I +K
Sbjct: 244 HKNGSTYWVEINI-VPIADAQGKITHFVSIQRDITEQKQ 281
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 224 RLVCGKRCSLPGMGFISSSLYI---SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYD 280
R +CG + ++L + ++ V+ D LP++P++YA+ AF +TGY
Sbjct: 530 RAICGISTDITDRKRAEANLLLRDRAIAASSNGIVICDARLPNLPIIYANPAFEYITGYS 589
Query: 281 RNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
EV+G+N RFL G DT+ + ++ AI
Sbjct: 590 PEEVIGRNFRFLQGNDTNQPEIQELRNAIQ 619
>gi|408380125|ref|ZP_11177713.1| sensory box histidine kinase [Agrobacterium albertimagni AOL15]
gi|407745966|gb|EKF57494.1| sensory box histidine kinase [Agrobacterium albertimagni AOL15]
Length = 375
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 64/105 (60%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
ITDP +PI+F ++ F ++G+S E+IGRN R+ QGP T+ + +REAI E+ +
Sbjct: 41 ITDPRQPDNPIIFCNQAFSNLTGYSIDELIGRNCRLLQGPETDSNAVARLREAIAAEQDL 100
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+++LNY+KDG+ FW +S V DG +F A Q+ + K
Sbjct: 101 AIDILNYRKDGSQFWNALFVSPV-RDADGEVVYFFASQLDFTTIK 144
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 39/60 (65%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
+ ++ DP PD P+++ + AF LTGY +E++G+NCR L G +TD+ + ++ AI+
Sbjct: 36 RMPMLITDPRQPDNPIIFCNQAFSNLTGYSIDELIGRNCRLLQGPETDSNAVARLREAIA 95
>gi|209524032|ref|ZP_03272583.1| multi-sensor signal transduction histidine kinase [Arthrospira
maxima CS-328]
gi|209495407|gb|EDZ95711.1| multi-sensor signal transduction histidine kinase [Arthrospira
maxima CS-328]
Length = 1184
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 73/123 (59%), Gaps = 1/123 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ A++ P+ I++ + + PI++ + F K++G+++ E+IG+N R QGP T+ I
Sbjct: 346 LQRAIEASPNGIVISENTKNDLPIIYCNAAFEKLTGYTKEEVIGQNCRFLQGPETHEDAI 405
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
IR++I+ ++ +V L NY+K+G+ FW +S V G+ THF+ +Q I RK
Sbjct: 406 AMIRQSIKRKQGCKVTLKNYRKNGSCFWNELAISPVRDHR-GKLTHFIGIQTDITERKQS 464
Query: 140 RNS 142
++
Sbjct: 465 EDA 467
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 28/35 (80%)
Query: 263 DMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDT 297
D+P++Y + AF KLTGY + EV+GQNCRFL G +T
Sbjct: 366 DLPIIYCNAAFEKLTGYTKEEVIGQNCRFLQGPET 400
>gi|448720995|ref|ZP_21703582.1| bacterio-opsin activator [Halobiforma nitratireducens JCM 10879]
gi|445780154|gb|EMA31056.1| bacterio-opsin activator [Halobiforma nitratireducens JCM 10879]
Length = 672
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 72/132 (54%), Gaps = 7/132 (5%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+++ P +++DPS+ +P+V+ +R + +++G+ ++GRN R+ QGP T+ I ++
Sbjct: 140 AIEDAPIGISLSDPSLPDNPLVYVNRAWEELTGYEEETVLGRNPRLLQGPDTDDEAIEKL 199
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRAT------HFVAVQVPIVSR 136
IR+ P V + NY++DGTPFW ++ + G E AT H+V Q + R
Sbjct: 200 ANGIRDGEPTTVEIRNYRRDGTPFWNELTIAPI-GNEGDDATADDEYAHYVGFQNDVSDR 258
Query: 137 KHMRNSGMSYSE 148
K SE
Sbjct: 259 KAAEELAEERSE 270
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 35/54 (64%)
Query: 256 LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
L DP LPD P+VY + A+ +LTGY+ V+G+N R L G DTD + +++ I
Sbjct: 150 LSDPSLPDNPLVYVNRAWEELTGYEEETVLGRNPRLLQGPDTDDEAIEKLANGI 203
>gi|28870075|ref|NP_792694.1| sensory box histidine kinase/response regulator [Pseudomonas
syringae pv. tomato str. DC3000]
gi|213966898|ref|ZP_03395048.1| sensory box histidine kinase/response regulator [Pseudomonas
syringae pv. tomato T1]
gi|301381580|ref|ZP_07229998.1| histidine kinase [Pseudomonas syringae pv. tomato Max13]
gi|302061664|ref|ZP_07253205.1| histidine kinase [Pseudomonas syringae pv. tomato K40]
gi|302134348|ref|ZP_07260338.1| histidine kinase [Pseudomonas syringae pv. tomato NCPPB 1108]
gi|81730912|sp|Q881J7.1|LOVHK_PSESM RecName: Full=Blue-light-activated protein; Includes: RecName:
Full=Blue-light-activated histidine kinase; AltName:
Full=PS-LOV-histidine kinase; Short=PS-LOV-HK; Includes:
RecName: Full=Response regulator
gi|28853321|gb|AAO56389.1| sensory box histidine kinase/response regulator [Pseudomonas
syringae pv. tomato str. DC3000]
gi|213928220|gb|EEB61765.1| sensory box histidine kinase/response regulator [Pseudomonas
syringae pv. tomato T1]
Length = 534
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 65/105 (61%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PI+F++R FL+M+G++ EI+G N R QGP T+ + IR+AI + I
Sbjct: 37 VTDPNRPDNPIIFSNRAFLEMTGYTAEEILGTNCRFLQGPDTDPAVVQSIRDAIAQRNDI 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
++NY+KDG+ FW +S V+ + G +F A Q+ I RK
Sbjct: 97 SAEIINYRKDGSSFWNALFISPVY-NDAGDLIYFFASQLDISRRK 140
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 44/68 (64%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP+ PD P+++++ AFL++TGY E++G NCRFL G DTD V+
Sbjct: 24 FFAAVETTRMPMIVTDPNRPDNPIIFSNRAFLEMTGYTAEEILGTNCRFLQGPDTDPAVV 83
Query: 303 YQVSIAIS 310
+ AI+
Sbjct: 84 QSIRDAIA 91
>gi|376004225|ref|ZP_09781972.1| putative two-component sensor histidine kinase [Arthrospira sp. PCC
8005]
gi|375327431|emb|CCE17725.1| putative two-component sensor histidine kinase [Arthrospira sp. PCC
8005]
Length = 1240
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 73/123 (59%), Gaps = 1/123 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ A++ P+ I++ + + PI++ + F K++G+++ E+IG+N R QGP T+ I
Sbjct: 346 LQRAIEASPNGIVISENTKNDLPIIYCNAAFEKLTGYTKEEVIGQNCRFLQGPETHEDAI 405
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
IR++I+ ++ +V L NY+K+G+ FW +S V G+ THF+ +Q I RK
Sbjct: 406 AMIRQSIKRKQGCKVTLKNYRKNGSCFWNELAISPVRDHR-GKLTHFIGIQTDITERKQS 464
Query: 140 RNS 142
++
Sbjct: 465 EDA 467
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%)
Query: 263 DMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
D+P++Y + AF KLTGY + EV+GQNCRFL G +T + + +I
Sbjct: 366 DLPIIYCNAAFEKLTGYTKEEVIGQNCRFLQGPETHEDAIAMIRQSI 412
>gi|423065965|ref|ZP_17054755.1| putative two-component sensor histidine kinase [Arthrospira
platensis C1]
gi|406712464|gb|EKD07649.1| putative two-component sensor histidine kinase [Arthrospira
platensis C1]
Length = 1240
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 73/123 (59%), Gaps = 1/123 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ A++ P+ I++ + + PI++ + F K++G+++ E+IG+N R QGP T+ I
Sbjct: 346 LQRAIEASPNGIVISENTKNDLPIIYCNAAFEKLTGYTKEEVIGQNCRFLQGPETHEDAI 405
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
IR++I+ ++ +V L NY+K+G+ FW +S V G+ THF+ +Q I RK
Sbjct: 406 AMIRQSIKRKQGCKVTLKNYRKNGSCFWNELAISPVRDHR-GKLTHFIGIQTDITERKQS 464
Query: 140 RNS 142
++
Sbjct: 465 EDA 467
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%)
Query: 263 DMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
D+P++Y + AF KLTGY + EV+GQNCRFL G +T + + +I
Sbjct: 366 DLPIIYCNAAFEKLTGYTKEEVIGQNCRFLQGPETHEDAIAMIRQSI 412
>gi|260760079|ref|ZP_05872427.1| signal transduction histidine kinase [Brucella abortus bv. 4 str.
292]
gi|260670397|gb|EEX57337.1| signal transduction histidine kinase [Brucella abortus bv. 4 str.
292]
Length = 179
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
IT+P + +PIVFA+ FLK++G+ E++GRN R QG T+ + I+ AI E+PI
Sbjct: 36 ITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPI 95
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+++++NYKK G FW +S V +GR HFV+ Q+ +
Sbjct: 96 DIDIINYKKSGEAFWNRLHISPVHNA-NGRLQHFVSSQLDV 135
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 42/56 (75%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
++ +PHLPD P+V+A+ AFLKLTGY+ +EV+G+NCRFL G TD + + AI+
Sbjct: 35 LITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIA 90
>gi|359454681|ref|ZP_09243954.1| sensor protein [Pseudoalteromonas sp. BSi20495]
gi|358048281|dbj|GAA80203.1| sensor protein [Pseudoalteromonas sp. BSi20495]
Length = 1098
Score = 87.4 bits (215), Expect = 8e-15, Method: Composition-based stats.
Identities = 41/105 (39%), Positives = 65/105 (61%), Gaps = 1/105 (0%)
Query: 32 TITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP 91
+I D + G P+VF + F K++G+ + ++IG+N R QGP T++++I I+ AI+ +
Sbjct: 446 SIADAKVPGLPLVFLNSEFEKITGYKKEDMIGKNCRALQGPNTDKKSISVIKNAIKTLKT 505
Query: 92 IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
V ++NYKKDGT FW ++S VF E + T FV +Q I R
Sbjct: 506 QRVEIVNYKKDGTAFWNSLQISPVF-DEHSKLTAFVGIQQDITKR 549
Score = 48.1 bits (113), Expect = 0.005, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 38/67 (56%)
Query: 256 LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYPKK 315
+ D +P +P+V+ + F K+TGY + +++G+NCR L G +TD + + AI +
Sbjct: 447 IADAKVPGLPLVFLNSEFEKITGYKKEDMIGKNCRALQGPNTDKKSISVIKNAIKTLKTQ 506
Query: 316 KSIYMEY 322
+ + Y
Sbjct: 507 RVEIVNY 513
>gi|289581708|ref|YP_003480174.1| multi-sensor signal transduction histidine kinase [Natrialba
magadii ATCC 43099]
gi|448282885|ref|ZP_21474167.1| multi-sensor signal transduction histidine kinase [Natrialba
magadii ATCC 43099]
gi|289531261|gb|ADD05612.1| multi-sensor signal transduction histidine kinase [Natrialba
magadii ATCC 43099]
gi|445575500|gb|ELY29975.1| multi-sensor signal transduction histidine kinase [Natrialba
magadii ATCC 43099]
Length = 477
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 64/115 (55%), Gaps = 3/115 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P +TD S+ +PIV+A+ F +++G+ AE++GRN R QG RT + + +
Sbjct: 143 AMDEAPVGIVLTDSSLPDNPIVYANEKFYELTGYPEAEVLGRNCRFLQGERTKQEPVDRM 202
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
R AI PI + NY++DGT FW ++ V E +FV Q I RK
Sbjct: 203 RAAIEAREPITTEVRNYRRDGTMFWNEVTIAPVDNSE---TPYFVGFQHEITRRK 254
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 30/41 (73%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG 294
VL D LPD P+VYA++ F +LTGY EV+G+NCRFL G
Sbjct: 151 IVLTDSSLPDNPIVYANEKFYELTGYPEAEVLGRNCRFLQG 191
>gi|428311102|ref|YP_007122079.1| PAS domain-containing protein [Microcoleus sp. PCC 7113]
gi|428252714|gb|AFZ18673.1| PAS domain S-box [Microcoleus sp. PCC 7113]
Length = 929
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 69/121 (57%), Gaps = 3/121 (2%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
I+D +PI++ + FLK++G+S+ E+IGRN R QG T+ + +IR++IR +
Sbjct: 41 IVISDARCFDNPIIYCNPAFLKITGYSQEEVIGRNCRFLQGHDTDPIAVEQIRQSIRTGQ 100
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG--MSYSE 148
+ V L NY+KDGT FW +S V G+ THF+ VQ I RK + M +S
Sbjct: 101 EVRVVLKNYRKDGTLFWNDLTISPV-RDSSGKVTHFIGVQTDITERKQAEETQQLMQFSI 159
Query: 149 D 149
D
Sbjct: 160 D 160
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 37/56 (66%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
V+ D D P++Y + AFLK+TGY + EV+G+NCRFL G DTD + Q+ +I
Sbjct: 41 IVISDARCFDNPIIYCNPAFLKITGYSQEEVIGRNCRFLQGHDTDPIAVEQIRQSI 96
>gi|253574406|ref|ZP_04851747.1| diguanylate cyclase/phosphodiesterase [Paenibacillus sp. oral taxon
786 str. D14]
gi|251846111|gb|EES74118.1| diguanylate cyclase/phosphodiesterase [Paenibacillus sp. oral taxon
786 str. D14]
Length = 575
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 68/113 (60%), Gaps = 1/113 (0%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+A+D + IT+P++ +P+V+ ++GF K++G+ R E++ RN R QG TN+ +
Sbjct: 23 QAIDRMGVGLAITNPNLPDNPLVYVNQGFEKITGYKREEVLNRNLRFLQGKETNKEHLAV 82
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
IR+AI+E V + NYKKDG+ FW F +S + E G +F+ +Q +
Sbjct: 83 IRKAIKEIGAATVTIKNYKKDGSTFWNQFVISPILDAE-GHLLYFIGLQFDVT 134
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 234 PGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLN 293
P +S+L ++ R+ + +P+LPD P+VY + F K+TGY R EV+ +N RFL
Sbjct: 12 PEFMLTASALLQAIDRMGVGLAITNPNLPDNPLVYVNQGFEKITGYKREEVLNRNLRFLQ 71
Query: 294 GVDTDTTVLYQVSIAI 309
G +T+ L + AI
Sbjct: 72 GKETNKEHLAVIRKAI 87
>gi|310794734|gb|EFQ30195.1| hypothetical protein GLRG_05339 [Glomerella graminicola M1.001]
Length = 876
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L D F +T+P ++ +PIVFAS GF+K++G++R EII RN R QG T+R + ++ AI
Sbjct: 566 LGDCFCLTNPGLADNPIVFASDGFIKVTGYTRPEIIPRNCRFLQGVHTDREPVRRLKAAI 625
Query: 87 REERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+ LLNYKK+G PFW L ++ ++ E G + F+ Q+
Sbjct: 626 EARKESVELLLNYKKNGDPFWNLLYVAPLYN-ESGMLSFFLGGQI 669
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
+S Y LG F L +P L D P+V+ASD F+K+TGY R E++ +NCRFL GV TD
Sbjct: 559 NSRTYQGLG---DCFCLTNPGLADNPIVFASDGFIKVTGYTRPEIIPRNCRFLQGVHTDR 615
Query: 300 TVLYQVSIAI 309
+ ++ AI
Sbjct: 616 EPVRRLKAAI 625
>gi|284166481|ref|YP_003404760.1| multi-sensor signal transduction histidine kinase [Haloterrigena
turkmenica DSM 5511]
gi|284016136|gb|ADB62087.1| multi-sensor signal transduction histidine kinase [Haloterrigena
turkmenica DSM 5511]
Length = 654
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
+DE P T++D + +P+V+A+ F +++G++R EI+GRN R QG RT + ++R
Sbjct: 324 IDEAPIGITLSDATRPDNPLVYANDQFERLTGYAREEILGRNCRFLQGERTATEPVDDLR 383
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
AI ER V L NY+KDG+ FW ++ V E+G T++V Q + RK
Sbjct: 384 AAIDAERSNTVELRNYRKDGSEFWNRVTVAPV-ADENGDVTNYVGFQQDVTERK 436
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 35/56 (62%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
L D PD P+VYA+D F +LTGY R E++G+NCRFL G T T + + AI
Sbjct: 331 ITLSDATRPDNPLVYANDQFERLTGYAREEILGRNCRFLQGERTATEPVDDLRAAI 386
>gi|219127781|ref|XP_002184107.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404338|gb|EEC44285.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 108
Score = 87.4 bits (215), Expect = 9e-15, Method: Composition-based stats.
Identities = 38/80 (47%), Positives = 53/80 (66%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
F ++DP + +PIVFAS GF K++G++ E++GRN R QGP T+ + + IR+A+
Sbjct: 6 FVLSDPKLPDNPIVFASPGFYKLTGYTSREVLGRNCRFLQGPGTDAKAVDVIRKAVGTGS 65
Query: 91 PIEVNLLNYKKDGTPFWMLF 110
V LLNYK DGTPFW F
Sbjct: 66 DATVCLLNYKADGTPFWNQF 85
Score = 68.6 bits (166), Expect = 4e-09, Method: Composition-based stats.
Identities = 31/59 (52%), Positives = 39/59 (66%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+Q FVL DP LPD P+V+AS F KLTGY EV+G+NCRFL G TD + + A+
Sbjct: 3 QQCFVLSDPKLPDNPIVFASPGFYKLTGYTSREVLGRNCRFLQGPGTDAKAVDVIRKAV 61
>gi|344211121|ref|YP_004795441.1| HTR-like protein [Haloarcula hispanica ATCC 33960]
gi|343782476|gb|AEM56453.1| HTR-like protein [Haloarcula hispanica ATCC 33960]
Length = 726
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 69/115 (60%), Gaps = 1/115 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P ITDP + +P+++A+ + ++G+S E++G+N RM QG T+ ++ +
Sbjct: 276 AIDEAPVGVVITDPGQTDNPLIYANDHYRDLTGYSLPELLGKNCRMLQGENTDPESVATM 335
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
R+AI E + V L NY+K+GT FW +++ V +DG ++V Q I RK
Sbjct: 336 RDAIDAEERVTVELRNYRKNGTEFWNRVRIAPVR-DDDGAVVNYVGFQQDITERK 389
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 10/81 (12%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLY----------Q 304
V+ DP D P++YA+D + LTGY E++G+NCR L G +TD + +
Sbjct: 285 VITDPGQTDNPLIYANDHYRDLTGYSLPELLGKNCRMLQGENTDPESVATMRDAIDAEER 344
Query: 305 VSIAISPYPKKKSIYMEYVRV 325
V++ + Y K + + VR+
Sbjct: 345 VTVELRNYRKNGTEFWNRVRI 365
>gi|404254832|ref|ZP_10958800.1| sensory box/GGDEF domain/EAL domain-containing protein
[Sphingomonas sp. PAMC 26621]
Length = 608
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 73/120 (60%), Gaps = 6/120 (5%)
Query: 29 DSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
DS IT+ ++ G I+F + F + +G+S E++GR R+ QGP T+ T ++R+A
Sbjct: 37 DSIIITEAEPVNLPGPRILFCNAAFERATGYSADEVLGRTPRILQGPATDPVTRAKLRDA 96
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATHFVAVQVPIVSRKHMRNSGM 144
+ + P+EV L+NY+KDGTPFW+ ++S+V + G TH+V+VQ I RK M
Sbjct: 97 LAKWEPVEVELVNYRKDGTPFWV--ELSIVPVANQAGWFTHWVSVQRDITERKAAEELAM 154
>gi|448311685|ref|ZP_21501439.1| HTR-like protein [Natronolimnobius innermongolicus JCM 12255]
gi|445603716|gb|ELY57673.1| HTR-like protein [Natronolimnobius innermongolicus JCM 12255]
Length = 655
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++E P T+TDP +PI++A+ F +SG+ R E++GRN R QG +T + +
Sbjct: 197 AMNEAPVGITLTDPHAEDNPIIYANDEFTSISGYERDEVLGRNCRFLQGEQTRDEPVANL 256
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
R A+ + V L NY+ DGT FW +++ +F ++G +FV Q + +K
Sbjct: 257 RAAVENRESVTVELRNYRADGTEFWNRVRIAPLF-DDNGDIEYFVGFQDDVTKKK 310
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 32/44 (72%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDT 297
L DPH D P++YA+D F ++GY+R+EV+G+NCRFL G T
Sbjct: 205 ITLTDPHAEDNPIIYANDEFTSISGYERDEVLGRNCRFLQGEQT 248
>gi|170747057|ref|YP_001753317.1| signal transduction histidine kinase [Methylobacterium
radiotolerans JCM 2831]
gi|170653579|gb|ACB22634.1| signal transduction histidine kinase [Methylobacterium
radiotolerans JCM 2831]
Length = 334
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 61/109 (55%), Gaps = 2/109 (1%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
ITD +PI +A+ FL +G++ EI+GRN RM QGP T+R T+ IR A+
Sbjct: 1 MVITDARAPDNPIAWANDAFLTATGYAADEIVGRNCRMLQGPATDRSTVQRIRSAVEAAE 60
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
PI V LLNY+KDG+ FW ++ V E G A +F A Q + M
Sbjct: 61 PISVELLNYRKDGSSFWNAMTITPVRDAE-GLA-YFYAAQADMTHVHQM 107
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 36/56 (64%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
V+ D PD P+ +A+DAFL TGY +E+VG+NCR L G TD + + ++ A+
Sbjct: 1 MVITDARAPDNPIAWANDAFLTATGYAADEIVGRNCRMLQGPATDRSTVQRIRSAV 56
>gi|406831765|ref|ZP_11091359.1| multi-sensor hybrid histidine kinase [Schlesneria paludicola DSM
18645]
Length = 819
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 68/117 (58%), Gaps = 1/117 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+ ITDP + +PI++AS GF +++G++ E++G+N RM QG T+ + I
Sbjct: 320 AIRAASQGIVITDPRRNDNPIIYASPGFERLTGYTAKELVGKNCRMLQGELTDPAAVARI 379
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
REA+ + V L+NY+K+G FW +S VF E+ + +FV VQ + R+ +
Sbjct: 380 REAVHAGQGCTVELVNYRKNGKSFWNHLALSAVF-DENQQLVNFVGVQTDVTERRSL 435
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%)
Query: 252 QSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
Q V+ DP D P++YAS F +LTGY E+VG+NCR L G TD + ++ A+
Sbjct: 326 QGIVITDPRRNDNPIIYASPGFERLTGYTAKELVGKNCRMLQGELTDPAAVARIREAV 383
>gi|85373423|ref|YP_457485.1| hypothetical protein ELI_02980 [Erythrobacter litoralis HTCC2594]
gi|123409698|sp|Q2NCA3.1|LVHK1_ERYLH RecName: Full=Blue-light-activated histidine kinase 1; AltName:
Full=EL360-LOV-histidine kinase; Short=EL360-LOV-HK
gi|84786506|gb|ABC62688.1| sensory box histidine kinase [Erythrobacter litoralis HTCC2594]
Length = 360
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+ I+DP P+V+ ++ FL ++G++R EI+GRN R QG T+ + ++RE I E
Sbjct: 49 AICISDPHQPDCPVVYVNQAFLDLTGYAREEIVGRNCRFLQGADTDPEQVRKLREGIAAE 108
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
R V+LLNY+KDG PFW + ++G EDG +F Q I
Sbjct: 109 RYTVVDLLNYRKDGIPFWNAVHVGPIYG-EDGTLQYFYGSQWDIT 152
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 34/46 (73%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+ + DPH PD P+VY + AFL LTGY R E+VG+NCRFL G DTD
Sbjct: 49 AICISDPHQPDCPVVYVNQAFLDLTGYAREEIVGRNCRFLQGADTD 94
>gi|429330861|ref|ZP_19211639.1| histidine kinase [Pseudomonas putida CSV86]
gi|428764447|gb|EKX86584.1| histidine kinase [Pseudomonas putida CSV86]
Length = 532
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 65/110 (59%), Gaps = 1/110 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+T+P+ + +PI+FA++ FL M+G+S EI+GRN R QGP T+ + IR AI
Sbjct: 37 VTNPNAADNPIIFANQAFLDMTGYSPEEIVGRNCRFLQGPDTDPEVVGAIRGAIEGRYDF 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S +F E G +F A Q+ + R+ ++
Sbjct: 97 STEILNYRKDGSSFWNALFISPIF-NEKGELVYFFASQLDVSRRRDAEDA 145
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 42/67 (62%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ +P+ D P+++A+ AFL +TGY E+VG+NCRFL G DTD V+
Sbjct: 24 FFAAVETTRMPMIVTNPNAADNPIIFANQAFLDMTGYSPEEIVGRNCRFLQGPDTDPEVV 83
Query: 303 YQVSIAI 309
+ AI
Sbjct: 84 GAIRGAI 90
>gi|448640838|ref|ZP_21677625.1| HTR-like protein [Haloarcula sinaiiensis ATCC 33800]
gi|445761363|gb|EMA12611.1| HTR-like protein [Haloarcula sinaiiensis ATCC 33800]
Length = 726
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 73/131 (55%), Gaps = 1/131 (0%)
Query: 7 LIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNG 66
+ EQ R L A+DE P TITDP+ +P+++A+ + +++G+S E++G+N
Sbjct: 260 VTEQKERERELLRNKRAIDEAPVGVTITDPNQPDNPLIYANDHYRELTGYSLPELLGKNC 319
Query: 67 RMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHF 126
R+ QG T+ + +R+AI + V L NY+KDGT FW +++ V +DG ++
Sbjct: 320 RILQGENTDPEPVDALRDAIDAGEQVSVELRNYRKDGTEFWNRVRIAPVR-DDDGTVVNY 378
Query: 127 VAVQVPIVSRK 137
V Q RK
Sbjct: 379 VGFQQDTTERK 389
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 10/81 (12%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL----------YQ 304
+ DP+ PD P++YA+D + +LTGY E++G+NCR L G +TD + Q
Sbjct: 285 TITDPNQPDNPLIYANDHYRELTGYSLPELLGKNCRILQGENTDPEPVDALRDAIDAGEQ 344
Query: 305 VSIAISPYPKKKSIYMEYVRV 325
VS+ + Y K + + VR+
Sbjct: 345 VSVELRNYRKDGTEFWNRVRI 365
>gi|254413183|ref|ZP_05026954.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196179803|gb|EDX74796.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 1145
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ A++ + I+DP +PI+F + GF +++G+S +E++GRN R QG +N+ +
Sbjct: 343 LESAVNASSNGILISDPHQPDNPIIFVNSGFERLTGYSASELLGRNCRFLQGDDSNQAQL 402
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
E+R+AI ++ ++ L NY+KDG+ FW +S V + G THF+ VQ + ++K
Sbjct: 403 EEVRQAIATKKDCQITLRNYRKDGSVFWNDLYISPVRNSQ-GTLTHFLGVQTDVTAQK 459
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 37/53 (69%)
Query: 258 DPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
DPH PD P+++ + F +LTGY +E++G+NCRFL G D++ L +V AI+
Sbjct: 358 DPHQPDNPIIFVNSGFERLTGYSASELLGRNCRFLQGDDSNQAQLEEVRQAIA 410
>gi|129560442|dbj|BAF48777.1| LOV-domain containing protein [Marchantia polymorpha]
Length = 718
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
V EAL +F + D +P+++AS GF M+G++ E++GRN R QG T+ + I
Sbjct: 279 VKEALTSFQLAFVVCDALNPEYPVLYASAGFFSMTGYTAKEVVGRNCRFLQGQYTDAKDI 338
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
IR+A+ + LLNYKKDG PFW L +S + E+GR ++ +Q +
Sbjct: 339 EMIRDALVNRKSFSGKLLNYKKDGIPFWNLLTISPI-KDEEGRIIKYIGMQAEVT 392
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 233 LPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFL 292
+PG +S ++ +L + +FV+ D P+ P++YAS F +TGY EVVG+NCRFL
Sbjct: 272 IPG---VSRNVKEALTSFQLAFVVCDALNPEYPVLYASAGFFSMTGYTAKEVVGRNCRFL 328
Query: 293 NGVDTDTTVLYQVSIAI 309
G TD + + A+
Sbjct: 329 QGQYTDAKDIEMIRDAL 345
>gi|218186238|gb|EEC68665.1| hypothetical protein OsI_37115 [Oryza sativa Indica Group]
Length = 458
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 75/129 (58%), Gaps = 5/129 (3%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL +F ++D + HPI++AS GF M+G++ E++GRN R QG T+ I +I
Sbjct: 130 ALSAFQQTFVVSDATRPNHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDPHEIDKI 189
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFV---AVQVPIVSRKHM 139
R+++ +LNYKKDGTPFW L ++ + EDGR F+ A +V +V+ +++
Sbjct: 190 RQSLANGSNYCGRILNYKKDGTPFWNLLTIAPI-KDEDGRLLKFIGFYAAEV-VVALEYL 247
Query: 140 RNSGMSYSE 148
G+ Y +
Sbjct: 248 HCQGIIYRD 256
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 38/60 (63%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L +Q+FV+ D P+ P++YAS F +TGY EVVG+NCRFL G TD
Sbjct: 123 VSEELRAALSAFQQTFVVSDATRPNHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTD 182
>gi|189194814|ref|XP_001933745.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187979624|gb|EDU46250.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 651
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 125/273 (45%), Gaps = 37/273 (13%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L + + ++DPS+ +PIVFAS GF + + + +IG+N R QGP+T + + I EA+
Sbjct: 238 LAEVYCLSDPSLPDNPIVFASEGFYNTTQYGQDYVIGKNCRFLQGPKTQKHAVKRIAEAV 297
Query: 87 REERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSY 146
+ + I LLNY++DG+PF L M+ G A +F+ Q+ I H+ G
Sbjct: 298 SKGQEISEILLNYRRDGSPFLNLV-MTAPLMDHRGAARYFIGCQIDI---SHLMEGGRGL 353
Query: 147 SEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLE------------IEDSC 194
+E+V + S L++ + L++ +D LE IE +C
Sbjct: 354 ESFEQLLNDQEMVMKPVSEPLIRQSPLEVLKELSILLNDEELEIVKHRNRVRRNSIESNC 413
Query: 195 EASDLEKRKAATAIDNILSVL--THYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQ 252
S R T I IL + T S G+ LPG + Q
Sbjct: 414 NTS---TRAVRTPIPRILVGMDTTFNSAYLPSRQFGRSGRLPG--------------VYQ 456
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVV 285
+++L+ P P + +++ S++ L++ G ++ ++
Sbjct: 457 NYILVRP-FPSLRIIFTSES-LRIPGLSQSRLM 487
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ + + L DP LPD P+V+AS+ F T Y ++ V+G+NCRFL G T + +++ A+
Sbjct: 238 LAEVYCLSDPSLPDNPIVFASEGFYNTTQYGQDYVIGKNCRFLQGPKTQKHAVKRIAEAV 297
Query: 310 SPYPKKKSIYMEYVR 324
S + I + Y R
Sbjct: 298 SKGQEISEILLNYRR 312
>gi|55377011|ref|YP_134861.1| HTR-like protein [Haloarcula marismortui ATCC 43049]
gi|55229736|gb|AAV45155.1| HTR-like protein [Haloarcula marismortui ATCC 43049]
Length = 726
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 73/131 (55%), Gaps = 1/131 (0%)
Query: 7 LIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNG 66
+ EQ R L A+DE P TITDP+ +P+++A+ + +++G+S E++G+N
Sbjct: 260 VTEQKERERELLRNKRAIDEAPVGVTITDPNQPDNPLIYANDHYRELTGYSLPELLGKNC 319
Query: 67 RMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHF 126
R+ QG T+ + +R+AI + V L NY+KDGT FW +++ V +DG ++
Sbjct: 320 RILQGENTDPEPVDALRDAIDAGEQVSVELRNYRKDGTEFWNRVRIAPVR-DDDGTVVNY 378
Query: 127 VAVQVPIVSRK 137
V Q RK
Sbjct: 379 VGFQQDTTERK 389
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 10/81 (12%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL----------YQ 304
+ DP+ PD P++YA+D + +LTGY E++G+NCR L G +TD + Q
Sbjct: 285 TITDPNQPDNPLIYANDHYRELTGYSLPELLGKNCRILQGENTDPEPVDALRDAIDAGEQ 344
Query: 305 VSIAISPYPKKKSIYMEYVRV 325
VS+ + Y K + + VR+
Sbjct: 345 VSVELRNYRKDGTEFWNRVRI 365
>gi|448651252|ref|ZP_21680321.1| HTR-like protein [Haloarcula californiae ATCC 33799]
gi|445770779|gb|EMA21837.1| HTR-like protein [Haloarcula californiae ATCC 33799]
Length = 726
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 73/131 (55%), Gaps = 1/131 (0%)
Query: 7 LIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNG 66
+ EQ R L A+DE P TITDP+ +P+++A+ + +++G+S E++G+N
Sbjct: 260 VTEQKERERELLRNKRAIDEAPVGVTITDPNQPDNPLIYANDHYRELTGYSLPELLGKNC 319
Query: 67 RMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHF 126
R+ QG T+ + +R+AI + V L NY+KDGT FW +++ V +DG ++
Sbjct: 320 RILQGENTDPEPVDALRDAIDAGEQVSVELRNYRKDGTEFWNRVRIAPVR-DDDGTVVNY 378
Query: 127 VAVQVPIVSRK 137
V Q RK
Sbjct: 379 VGFQQDTTERK 389
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 10/81 (12%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL----------YQ 304
+ DP+ PD P++YA+D + +LTGY E++G+NCR L G +TD + Q
Sbjct: 285 TITDPNQPDNPLIYANDHYRELTGYSLPELLGKNCRILQGENTDPEPVDALRDAIDAGEQ 344
Query: 305 VSIAISPYPKKKSIYMEYVRV 325
VS+ + Y K + + VR+
Sbjct: 345 VSVELRNYRKDGTEFWNRVRI 365
>gi|209526785|ref|ZP_03275306.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(s) [Arthrospira maxima CS-328]
gi|423066822|ref|ZP_17055612.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(s) [Arthrospira platensis C1]
gi|209492746|gb|EDZ93080.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(s) [Arthrospira maxima CS-328]
gi|406711587|gb|EKD06787.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(s) [Arthrospira platensis C1]
Length = 1276
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 73/126 (57%), Gaps = 1/126 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++ + ITD + S + ++FA+ GF K++G+SR ++IGRN R QG ++ + + E+
Sbjct: 338 AINSSRNGIIITDATESDNRVIFANSGFEKITGYSRHQVIGRNCRFLQGRDSDPKALAEL 397
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R AI E R + L Y+ DG+ FW +S V+ + G T+F+ +Q I RK +
Sbjct: 398 RSAIEEGRECNIELKKYRPDGSSFWNELSISPVYNNQ-GFLTNFIGIQTDISDRKQAEAN 456
Query: 143 GMSYSE 148
+S SE
Sbjct: 457 LLSKSE 462
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ ++ D D +++A+ F K+TGY R++V+G+NCRFL G D+D L ++ AI
Sbjct: 343 RNGIIITDATESDNRVIFANSGFEKITGYSRHQVIGRNCRFLQGRDSDPKALAELRSAI 401
>gi|218531393|ref|YP_002422209.1| histidine kinase [Methylobacterium extorquens CM4]
gi|218523696|gb|ACK84281.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium extorquens
CM4]
Length = 533
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 68/120 (56%), Gaps = 3/120 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+ +P + DP+ HPIVF ++ FL+M+G++R E+IG N R QGP T+ T +
Sbjct: 37 AMTRMP--MVVVDPNQDDHPIVFVNQAFLEMTGYARDEVIGHNCRFLQGPETDPATRALV 94
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R+A+ R + +LNY+KDG+ FW +S V+ G +F Q+ I R+ +S
Sbjct: 95 RDAVAARRDVATEILNYRKDGSSFWNALFVSPVYNAA-GDLLYFFGSQLDITRRRLAEDS 153
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 44/71 (61%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S + ++ + V++DP+ D P+V+ + AFL++TGY R+EV+G NCRFL G +TD
Sbjct: 29 SGIFFAAVAMTRMPMVVVDPNQDDHPIVFVNQAFLEMTGYARDEVIGHNCRFLQGPETDP 88
Query: 300 TVLYQVSIAIS 310
V A++
Sbjct: 89 ATRALVRDAVA 99
>gi|334116631|ref|ZP_08490723.1| PAS/PAC sensor signal transduction histidine kinase [Microcoleus
vaginatus FGP-2]
gi|333461451|gb|EGK90056.1| PAS/PAC sensor signal transduction histidine kinase [Microcoleus
vaginatus FGP-2]
Length = 1102
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 75/131 (57%), Gaps = 6/131 (4%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88
+S I D S PI++ + F K++G+S E+IGRN R QGP T++ + ++R ++R
Sbjct: 20 NSILIADASRPDIPIIYCNPAFEKLTGYSAEEVIGRNCRFLQGPDTDQAELDKLRSSLRA 79
Query: 89 ERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSE 148
I+V L NY+KD TPFW +S + E G+ THF+ VQ I S++ + + SE
Sbjct: 80 GTEIQVVLKNYRKDKTPFWNELIVSPILDNE-GKLTHFIGVQNDI-SKRVAAETALQESE 137
Query: 149 DGGGSRLREIV 159
+ RLR I
Sbjct: 138 E----RLRAIA 144
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
S ++ D PD+P++Y + AF KLTGY EV+G+NCRFL G DTD L
Sbjct: 21 SILIADASRPDIPIIYCNPAFEKLTGYSAEEVIGRNCRFLQGPDTDQAEL 70
>gi|376003464|ref|ZP_09781274.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) and
GGDEF and EAL domains (modular protein) [Arthrospira sp.
PCC 8005]
gi|375328121|emb|CCE17027.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) and
GGDEF and EAL domains (modular protein) [Arthrospira sp.
PCC 8005]
Length = 1279
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 73/126 (57%), Gaps = 1/126 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++ + ITD + S + ++FA+ GF K++G+SR ++IGRN R QG ++ + + E+
Sbjct: 341 AINSSRNGIIITDATESDNRVIFANSGFEKITGYSRHQVIGRNCRFLQGRDSDPKALAEL 400
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R AI E R + L Y+ DG+ FW +S V+ + G T+F+ +Q I RK +
Sbjct: 401 RSAIEEGRECNIELKKYRPDGSSFWNELSISPVYNNQ-GFLTNFIGIQTDISDRKQAEAN 459
Query: 143 GMSYSE 148
+S SE
Sbjct: 460 LLSKSE 465
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ ++ D D +++A+ F K+TGY R++V+G+NCRFL G D+D L ++ AI
Sbjct: 346 RNGIIITDATESDNRVIFANSGFEKITGYSRHQVIGRNCRFLQGRDSDPKALAELRSAI 404
>gi|428316777|ref|YP_007114659.1| PAS/PAC sensor signal transduction histidine kinase [Oscillatoria
nigro-viridis PCC 7112]
gi|428240457|gb|AFZ06243.1| PAS/PAC sensor signal transduction histidine kinase [Oscillatoria
nigro-viridis PCC 7112]
Length = 1102
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88
+S I D PI++ + F K++G+S E+IGRN R QGP T+R + ++R ++R
Sbjct: 20 NSILIADARQPDTPIIYCNPAFEKLTGYSAEEVIGRNCRFLQGPDTDRAELDKLRSSLRS 79
Query: 89 ERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
I+V L NY+KD TPFW +S + E G+ THF+ VQ I R
Sbjct: 80 GTEIQVVLKNYRKDKTPFWNELMVSPILDNE-GKLTHFIGVQNDISKR 126
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 33/50 (66%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
S ++ D PD P++Y + AF KLTGY EV+G+NCRFL G DTD L
Sbjct: 21 SILIADARQPDTPIIYCNPAFEKLTGYSAEEVIGRNCRFLQGPDTDRAEL 70
>gi|418058507|ref|ZP_12696479.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium extorquens
DSM 13060]
gi|373567931|gb|EHP93888.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium extorquens
DSM 13060]
Length = 533
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 68/120 (56%), Gaps = 3/120 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+ +P + DP+ HPIVF ++ FL+M+G++R E+IG N R QGP T+ T +
Sbjct: 37 AMTRMP--MVVVDPNQDDHPIVFVNQAFLEMTGYARDEVIGHNCRFLQGPETDPATRALV 94
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R+A+ R + +LNY+KDG+ FW +S V+ G +F Q+ I R+ +S
Sbjct: 95 RDAVAARRDVATEILNYRKDGSSFWNALFVSPVYNAA-GDLLYFFGSQLDITRRRLAEDS 153
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 44/71 (61%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S + ++ + V++DP+ D P+V+ + AFL++TGY R+EV+G NCRFL G +TD
Sbjct: 29 SGIFFAAVAMTRMPMVVVDPNQDDHPIVFVNQAFLEMTGYARDEVIGHNCRFLQGPETDP 88
Query: 300 TVLYQVSIAIS 310
V A++
Sbjct: 89 ATRALVRDAVA 99
>gi|240139889|ref|YP_002964366.1| hybrid histidine kinase with PAS/PAC and response regulator
receiver domains [Methylobacterium extorquens AM1]
gi|240009863|gb|ACS41089.1| putative hybrid histidine kinase with PAS/PAC and response
regulator receiver domains [Methylobacterium extorquens
AM1]
Length = 533
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 68/120 (56%), Gaps = 3/120 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+ +P + DP+ HPIVF ++ FL+M+G++R E+IG N R QGP T+ T +
Sbjct: 37 AMTRMP--MVVVDPNQDDHPIVFVNQAFLEMTGYARDEVIGHNCRFLQGPETDPATRALV 94
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R+A+ R + +LNY+KDG+ FW +S V+ G +F Q+ I R+ +S
Sbjct: 95 RDAVAARRDVATEILNYRKDGSSFWNALFVSPVYNAA-GDLLYFFGSQLDITRRRLAEDS 153
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 44/71 (61%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S + ++ + V++DP+ D P+V+ + AFL++TGY R+EV+G NCRFL G +TD
Sbjct: 29 SGIFFAAVAMTRMPMVVVDPNQDDHPIVFVNQAFLEMTGYARDEVIGHNCRFLQGPETDP 88
Query: 300 TVLYQVSIAIS 310
V A++
Sbjct: 89 ATRALVRDAVA 99
>gi|333983401|ref|YP_004512611.1| PAS sensor protein [Methylomonas methanica MC09]
gi|333807442|gb|AEG00112.1| PAS sensor protein [Methylomonas methanica MC09]
Length = 150
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 73/125 (58%), Gaps = 1/125 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
LDE + T+ DP + PI++A++ F +++G+S+ EI+G N R QG + +I
Sbjct: 20 LDECVNGVTLADPDLEDAPIIYANKAFERLTGYSQEEIVGHNCRFLQGEDREQPARYKIA 79
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143
EA+R+++ +EV L NY+KDGT F K+ +F K+ R +++ VQ I + +N
Sbjct: 80 EAMRKQQGVEVTLRNYRKDGTLFHNHLKVIPLFDKKQ-RVIYYLGVQYDITQQVDAKNEI 138
Query: 144 MSYSE 148
S +E
Sbjct: 139 KSLTE 143
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 41/73 (56%)
Query: 237 GFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296
G I L L L DP L D P++YA+ AF +LTGY + E+VG NCRFL G D
Sbjct: 10 GIIPQVLSAILDECVNGVTLADPDLEDAPIIYANKAFERLTGYSQEEIVGHNCRFLQGED 69
Query: 297 TDTTVLYQVSIAI 309
+ Y+++ A+
Sbjct: 70 REQPARYKIAEAM 82
>gi|448677831|ref|ZP_21689021.1| HTR-like protein [Haloarcula argentinensis DSM 12282]
gi|445773506|gb|EMA24539.1| HTR-like protein [Haloarcula argentinensis DSM 12282]
Length = 748
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 67/129 (51%), Gaps = 1/129 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ A+DE P + P PI +A+R FL+++G++ +E+ GRN R QG T +
Sbjct: 257 IKRAMDEAPIGIILAGPKQDDAPITYANRRFLELTGYTESEVRGRNCRFLQGEATESEPV 316
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
+R A+ E P+ V L NY+KDGT FW ++ V +DG ++V Q I RK
Sbjct: 317 DAMRAAVDEGDPVSVELRNYRKDGTMFWNQVSIAPVR-DDDGTVVNYVGFQQDITERKQH 375
Query: 140 RNSGMSYSE 148
+ SE
Sbjct: 376 ERRLKALSE 384
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 7/60 (11%)
Query: 247 LGRIKQSF-------VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
L RIK++ +L P D P+ YA+ FL+LTGY +EV G+NCRFL G T++
Sbjct: 254 LSRIKRAMDEAPIGIILAGPKQDDAPITYANRRFLELTGYTESEVRGRNCRFLQGEATES 313
>gi|322370523|ref|ZP_08045081.1| bacterio-opsin activator [Haladaptatus paucihalophilus DX253]
gi|320549940|gb|EFW91596.1| bacterio-opsin activator [Haladaptatus paucihalophilus DX253]
Length = 621
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 63/121 (52%), Gaps = 1/121 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++E P TI D P+++ + F +++G+ E+ G N R QG ++ + +
Sbjct: 122 AINEAPVGITIADAESGDQPLLYVNEAFEELTGYDFDEVQGHNCRFLQGEHSDADAVAAM 181
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R+AI E P+ V LLNY+KDGT FW ++ + E G THFV Q I RK +
Sbjct: 182 RDAIDAEEPVSVELLNYRKDGTEFWNRVDIAPI-RDETGTVTHFVGFQTDISERKRAEEA 240
Query: 143 G 143
Sbjct: 241 A 241
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ D D P++Y ++AF +LTGYD +EV G NCRFL G +D + + AI
Sbjct: 130 ITIADAESGDQPLLYVNEAFEELTGYDFDEVQGHNCRFLQGEHSDADAVAAMRDAI 185
>gi|209547274|ref|YP_002279192.1| hypothetical protein Rleg2_5263 [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209538518|gb|ACI58452.1| signal transduction histidine kinase [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 345
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 60/101 (59%), Gaps = 1/101 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
+TD PIV A++ FL ++G++ E++GRN R Q P T+ + EIR +I EER
Sbjct: 40 MVVTDARKPDLPIVLANKSFLDLTGYAADEVVGRNCRFLQRPATSPIAVAEIRASIAEER 99
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+ V +LNYKK G PFW +S + G +DGR +F Q+
Sbjct: 100 DVSVEILNYKKSGEPFWNRLHLSPIHG-DDGRILYFFGSQI 139
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQ 304
++ R + V+ D PD+P+V A+ +FL LTGY +EVVG+NCRFL T + +
Sbjct: 31 VAFERTRMPMVVTDARKPDLPIVLANKSFLDLTGYAADEVVGRNCRFLQRPATSPIAVAE 90
Query: 305 VSIAIS 310
+ +I+
Sbjct: 91 IRASIA 96
>gi|300869179|ref|ZP_07113775.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(S) [Oscillatoria sp. PCC 6506]
gi|300332828|emb|CBN58973.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(S) [Oscillatoria sp. PCC 6506]
Length = 1041
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 71/130 (54%), Gaps = 1/130 (0%)
Query: 8 IEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGR 67
IE+S + + A+ + ITD + S +P ++ + F +M+G+ R EI+G+N R
Sbjct: 31 IERSRSEERLQLMERAIASSSNGIIITDATQSDNPTIYVNPSFERMTGYQRDEILGKNCR 90
Query: 68 MFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFV 127
+ Q N+ + E+R A+ E + +V L NY+KDGTPFW +S V+ THFV
Sbjct: 91 ILQRADRNQPALKEVRTALNEGKECQVVLKNYRKDGTPFWNELSISPVYNTRR-HLTHFV 149
Query: 128 AVQVPIVSRK 137
+Q I RK
Sbjct: 150 GIQTDITDRK 159
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 15/104 (14%)
Query: 207 AIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPM 266
AI N+L+ S+ RL +R I+SS ++ D D P
Sbjct: 22 AIANVLAAAIERSRSEERLQLMERA-------IASS--------SNGIIITDATQSDNPT 66
Query: 267 VYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
+Y + +F ++TGY R+E++G+NCR L D + L +V A++
Sbjct: 67 IYVNPSFERMTGYQRDEILGKNCRILQRADRNQPALKEVRTALN 110
>gi|254562311|ref|YP_003069406.1| hybrid histidine kinase [Methylobacterium extorquens DM4]
gi|254269589|emb|CAX25559.1| putative hybrid histidine kinase with PAS/PAC and response
regulator receiver domains [Methylobacterium extorquens
DM4]
Length = 533
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
+ DP+ HPIVF ++ FL+M+G++R E+IG N R QGP T+ T +R+A+ R
Sbjct: 43 MVVVDPNQDDHPIVFVNQAFLEMTGYARDEVIGHNCRFLQGPETDPATRALVRDAVAARR 102
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+ +LNY+KDG+ FW +S V+ G +F Q+ I R+ +S
Sbjct: 103 DVATEILNYRKDGSSFWNALFVSPVYNAA-GDLLYFFGSQLDITRRRLAEDS 153
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 44/71 (61%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S + ++ + V++DP+ D P+V+ + AFL++TGY R+EV+G NCRFL G +TD
Sbjct: 29 SGIFFAAVEMTRMPMVVVDPNQDDHPIVFVNQAFLEMTGYARDEVIGHNCRFLQGPETDP 88
Query: 300 TVLYQVSIAIS 310
V A++
Sbjct: 89 ATRALVRDAVA 99
>gi|163852555|ref|YP_001640598.1| histidine kinase [Methylobacterium extorquens PA1]
gi|163664160|gb|ABY31527.1| PAS sensor protein [Methylobacterium extorquens PA1]
Length = 533
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
+ DP+ HPIVF ++ FL+M+G++R E+IG N R QGP T+ T +R+A+ R
Sbjct: 43 MVVVDPNQDDHPIVFVNQAFLEMTGYARDEVIGHNCRFLQGPETDPATRALVRDAVAARR 102
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+ +LNY+KDG+ FW +S V+ G +F Q+ I R+ +S
Sbjct: 103 DVATEILNYRKDGSSFWNALFVSPVYNAA-GDLLYFFGSQLDITRRRLAEDS 153
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 44/71 (61%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S + ++ + V++DP+ D P+V+ + AFL++TGY R+EV+G NCRFL G +TD
Sbjct: 29 SGIFFAAVEMTRMPMVVVDPNQDDHPIVFVNQAFLEMTGYARDEVIGHNCRFLQGPETDP 88
Query: 300 TVLYQVSIAIS 310
V A++
Sbjct: 89 ATRALVRDAVA 99
>gi|336451390|ref|ZP_08621828.1| diguanylate cyclase (GGDEF) domain-containing protein [Idiomarina
sp. A28L]
gi|336281761|gb|EGN75033.1| diguanylate cyclase (GGDEF) domain-containing protein [Idiomarina
sp. A28L]
Length = 880
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 68/109 (62%), Gaps = 1/109 (0%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88
+ I D G+P+V+ + F +++G+S AE++G N ++ QG T+ R I +IR +++
Sbjct: 337 NGIVIADARQQGYPLVYVNPAFQRITGYSAAEMLGNNCKVLQGEGTDSRAIEQIRNCLKK 396
Query: 89 ERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
ER ++ + NY+KDGTPFW ++ V K +G TH++ +Q + +RK
Sbjct: 397 ERDVQTIIRNYRKDGTPFWNDLYIAPVRDK-NGVLTHYIGIQNDVTARK 444
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
V+ D P+VY + AF ++TGY E++G NC+ L G TD+ + Q+
Sbjct: 339 IVIADARQQGYPLVYVNPAFQRITGYSAAEMLGNNCKVLQGEGTDSRAIEQI 390
>gi|383323933|ref|YP_005384787.1| chromatic acclimation sensor CcaS/ScaS/Hik32 [Synechocystis sp. PCC
6803 substr. GT-I]
gi|383327102|ref|YP_005387956.1| chromatic acclimation sensor CcaS/ScaS/Hik32 [Synechocystis sp. PCC
6803 substr. PCC-P]
gi|383492986|ref|YP_005410663.1| chromatic acclimation sensor CcaS/ScaS/Hik32 [Synechocystis sp. PCC
6803 substr. PCC-N]
gi|384438254|ref|YP_005652979.1| chromatic acclimation sensor CcaS/ScaS/Hik32 [Synechocystis sp. PCC
6803]
gi|114848882|gb|ABI83649.1| chromatic acclimation sensor [Synechocystis sp. PCC 6803]
gi|339275287|dbj|BAK51774.1| chromatic acclimation sensor CcaS/ScaS/Hik32 [Synechocystis sp. PCC
6803]
gi|359273253|dbj|BAL30772.1| chromatic acclimation sensor CcaS/ScaS/Hik32 [Synechocystis sp. PCC
6803 substr. GT-I]
gi|359276423|dbj|BAL33941.1| chromatic acclimation sensor CcaS/ScaS/Hik32 [Synechocystis sp. PCC
6803 substr. PCC-N]
gi|359279593|dbj|BAL37110.1| chromatic acclimation sensor CcaS/ScaS/Hik32 [Synechocystis sp. PCC
6803 substr. PCC-P]
Length = 753
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 84/160 (52%), Gaps = 12/160 (7%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
I DP G I++ + F K++G++ E++G+ R+ QGP+T+R + +R+AI + + +
Sbjct: 406 IDDP---GPRILYVNEAFTKITGYTAEEMLGKTPRVLQGPKTSRTELDRVRQAISQWQSV 462
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSEDGGG 152
V ++NY+KDG+ FW+ F + V K G TH++AVQ + R+ ++ +
Sbjct: 463 TVEVINYRKDGSEFWVEFSLVPVANK-TGFYTHWIAVQRDVTERRRTEEVRLALEREKEL 521
Query: 153 SRLREIVFGSCRRE--------VCSDSLLDLDRVLALDSD 184
SRL+ F E + + LL+ V LD D
Sbjct: 522 SRLKTRFFSMASHEFRTPLSTALAAAQLLENSEVAWLDPD 561
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 262 PDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYPKKKSIYME 321
P ++Y ++AF K+TGY E++G+ R L G T T L +V AIS + +S+ +E
Sbjct: 409 PGPRILYVNEAFTKITGYTAEEMLGKTPRVLQGPKTSRTELDRVRQAISQW---QSVTVE 465
Query: 322 YV 323
+
Sbjct: 466 VI 467
>gi|129560444|dbj|BAF48778.1| LOV domain-containing protein [Marchantia polymorpha]
gi|129560446|dbj|BAF48779.1| LOV domain-containing protein [Marchantia polymorpha]
Length = 712
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
V EAL +F + D + +PI++AS GF M+G++ E++GRN R QG T+ I
Sbjct: 277 VKEALASFQLAFVVCDALNAEYPILYASAGFFSMTGYTAKEVVGRNCRFLQGQYTDAHDI 336
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
IR A+RE LLNYKKDG+PFW L +S + + GR ++ +Q +
Sbjct: 337 AMIRGALREGNIYTGKLLNYKKDGSPFWNLLTISPIR-DDGGRLIKYIGMQAEVT 390
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 50/106 (47%)
Query: 193 SCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQ 252
S E + + T + S L S+ T P + +S ++ +L +
Sbjct: 227 SAETEGISRLSWTTGSSDTSSALGKSSRTTSEGSSACSSFSPMIPGLSKNVKEALASFQL 286
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+FV+ D + P++YAS F +TGY EVVG+NCRFL G TD
Sbjct: 287 AFVVCDALNAEYPILYASAGFFSMTGYTAKEVVGRNCRFLQGQYTD 332
>gi|344338687|ref|ZP_08769618.1| PAS sensor protein [Thiocapsa marina 5811]
gi|343801269|gb|EGV19212.1| PAS sensor protein [Thiocapsa marina 5811]
Length = 153
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 73/123 (59%), Gaps = 1/123 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ + LD + T++DP +PIV+A+ F ++G+SR EI+G N R+ QG ++ +
Sbjct: 16 LSQILDTSINGITLSDPDQEDNPIVYANEAFELITGYSREEIVGHNCRILQGQDRDQEGL 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
++REAIRE + V L NY+KDGT F+ F + ++ ++ G+ +F+ VQ + + +
Sbjct: 76 EKVREAIRERKRTTVTLRNYRKDGTLFYNRFSIRPLYDRQ-GKLIYFLGVQYDVTEQVYA 134
Query: 140 RNS 142
R
Sbjct: 135 REE 137
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 34/55 (61%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
L DP D P+VYA++AF +TGY R E+VG NCR L G D D L +V AI
Sbjct: 28 TLSDPDQEDNPIVYANEAFELITGYSREEIVGHNCRILQGQDRDQEGLEKVREAI 82
>gi|188582718|ref|YP_001926163.1| signal transduction histidine kinase [Methylobacterium populi
BJ001]
gi|179346216|gb|ACB81628.1| putative signal transduction histidine kinase [Methylobacterium
populi BJ001]
Length = 354
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 65/110 (59%), Gaps = 1/110 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+ ITDP +PI++A+ FL+++G++R E+ GRN R QGP T+ T+ IR AIR E
Sbjct: 35 AMIITDPRRLDNPIIYANDAFLRLTGYTRLEVTGRNCRFLQGPETDLDTVARIRAAIRSE 94
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
+ + L+NY+KDG+ F +S V EDG F A Q+ + R +
Sbjct: 95 QDVSAELVNYRKDGSTFHNALFISPVH-DEDGTLLFFFASQLDVSERHAL 143
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Query: 220 QLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGY 279
QLT R+ R G G ++ + + ++ DP D P++YA+DAFL+LTGY
Sbjct: 8 QLTERIRASARS---GKG---DPFAAAVRATRMAMIITDPRRLDNPIIYANDAFLRLTGY 61
Query: 280 DRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
R EV G+NCRFL G +TD + ++ AI
Sbjct: 62 TRLEVTGRNCRFLQGPETDLDTVARIRAAI 91
>gi|422643880|ref|ZP_16707019.1| PAS:GGDEF protein [Pseudomonas syringae pv. maculicola str. ES4326]
gi|330957433|gb|EGH57693.1| PAS:GGDEF protein [Pseudomonas syringae pv. maculicola str. ES4326]
Length = 757
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 69/113 (61%), Gaps = 6/113 (5%)
Query: 29 DSFTITDPS---ISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ ITD + G IV+ + FL ++GF+ E+IGR R+ Q T+R T+ IREA
Sbjct: 179 DAILITDAEPIDLPGPRIVYCNPAFLAITGFTEDEVIGRTPRILQCEDTSRETLDVIREA 238
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATHFVAVQVPIVSRK 137
+ RP+EV LLN +KDG+ FW+ ++S+V E G TH+V+VQ I RK
Sbjct: 239 LTHWRPVEVELLNTRKDGSQFWV--ELSIVPVANEKGWFTHWVSVQRDITERK 289
>gi|159471175|ref|XP_001693732.1| predicted protein [Chlamydomonas reinhardtii]
gi|158283235|gb|EDP08986.1| predicted protein [Chlamydomonas reinhardtii]
Length = 115
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 61/102 (59%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88
+ TI+DPS+ +PIV+ ++ FL M+G+SR E++GRN R QGP T+ ++ IREA+ +
Sbjct: 3 EGITISDPSLPDNPIVYTNQAFLAMTGYSREEVLGRNCRFLQGPDTDPGSVAAIREALSQ 62
Query: 89 ERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
R V L+NY K G F +++ V GR V VQ
Sbjct: 63 RRGATVRLVNYTKQGCRFVNELRLAPVREPGSGRVIAIVGVQ 104
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 41/61 (67%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+++ + DP LPD P+VY + AFL +TGY R EV+G+NCRFL G DTD + + A+
Sbjct: 1 VREGITISDPSLPDNPIVYTNQAFLAMTGYSREEVLGRNCRFLQGPDTDPGSVAAIREAL 60
Query: 310 S 310
S
Sbjct: 61 S 61
>gi|119493186|ref|ZP_01624061.1| hypothetical protein L8106_15704 [Lyngbya sp. PCC 8106]
gi|119452751|gb|EAW33928.1| hypothetical protein L8106_15704 [Lyngbya sp. PCC 8106]
Length = 1653
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 87/158 (55%), Gaps = 12/158 (7%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ A++ + ITDP+ +PI++A+ +++GFS +E+IG N R FQ ++ I
Sbjct: 606 LERAINFTSNGILITDPNQPDNPIIYANSAIERITGFSPSEMIGYNPRFFQQNNRDQAGI 665
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
E+R+A+++ + V L NY+ DGTP W+ +S VF + G THF+ VQ I R+
Sbjct: 666 NELRQAVQQAKECNVILQNYRADGTPIWIELYISPVFN-DAGLLTHFIGVQNDITERRQT 724
Query: 140 RNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDR 177
+ SE +RLR ++ ++ D ++ +D+
Sbjct: 725 E-VALQASE----ARLRGLL------DIAQDGIISIDQ 751
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 15/116 (12%)
Query: 207 AIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPM 266
AI NIL+ + T RL +R + F S+ + I+ DP+ PD P+
Sbjct: 585 AIANILATAVEKVESTERLRLLER----AINFTSNGILIT-----------DPNQPDNPI 629
Query: 267 VYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYPKKKSIYMEY 322
+YA+ A ++TG+ +E++G N RF + D + ++ A+ + I Y
Sbjct: 630 IYANSAIERITGFSPSEMIGYNPRFFQQNNRDQAGINELRQAVQQAKECNVILQNY 685
>gi|399087808|ref|ZP_10753267.1| PAS domain S-box [Caulobacter sp. AP07]
gi|398031967|gb|EJL25334.1| PAS domain S-box [Caulobacter sp. AP07]
Length = 369
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 64/110 (58%), Gaps = 1/110 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+ +TDP + +PI+FA+ FLK++G+ E+IGRN R QGP T+ +REAI +
Sbjct: 34 AMIVTDPHQADNPIIFANDAFLKLTGYPHDEVIGRNCRFLQGPDTDPVQADRVREAIAKG 93
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
V++LNY+KDG+ FW +S V K G +F A Q+ + K +
Sbjct: 94 EDAVVDILNYRKDGSSFWNALHVSPVRDKA-GEVAYFFASQLDVSDSKRL 142
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 47/72 (65%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S ++ + + ++ DPH D P+++A+DAFLKLTGY +EV+G+NCRFL G DTD
Sbjct: 20 LSGPFAAAIRATRMAMIVTDPHQADNPIIFANDAFLKLTGYPHDEVIGRNCRFLQGPDTD 79
Query: 299 TTVLYQVSIAIS 310
+V AI+
Sbjct: 80 PVQADRVREAIA 91
>gi|374621544|ref|ZP_09694075.1| PAS sensor protein [Ectothiorhodospira sp. PHS-1]
gi|373940676|gb|EHQ51221.1| PAS sensor protein [Ectothiorhodospira sp. PHS-1]
Length = 150
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 65/109 (59%), Gaps = 1/109 (0%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+ LD + T++DP + +PIV+A+ F M+G+SRAEIIG N R QG + I E
Sbjct: 19 QILDTCVNGVTLSDPDLPDNPIVYANAVFEHMTGYSRAEIIGHNCRFLQGEDREQPAIEE 78
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
IR+A+ E R +EV L NY+KDGT F + +F G+ +F+ VQ
Sbjct: 79 IRKALAERREVEVTLRNYRKDGTLFHNRLSIRPLFDAS-GKLIYFLGVQ 126
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 41/74 (55%)
Query: 237 GFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296
G I S L L L DP LPD P+VYA+ F +TGY R E++G NCRFL G D
Sbjct: 11 GLIPSVLAQILDTCVNGVTLSDPDLPDNPIVYANAVFEHMTGYSRAEIIGHNCRFLQGED 70
Query: 297 TDTTVLYQVSIAIS 310
+ + ++ A++
Sbjct: 71 REQPAIEEIRKALA 84
>gi|119484845|ref|ZP_01619327.1| Multi-sensor Signal Transduction Histidine Kinase [Lyngbya sp. PCC
8106]
gi|119457663|gb|EAW38787.1| Multi-sensor Signal Transduction Histidine Kinase [Lyngbya sp. PCC
8106]
Length = 1211
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 64/115 (55%), Gaps = 1/115 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+ P I+D +PI++ + F +++G+S ++I GRN R QG T+ + I I
Sbjct: 351 AIAASPSGIVISDAKAKDNPIIYCNPTFERITGYSSSDIQGRNCRFLQGNDTDPQAIETI 410
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
R ++RE + V L NY+KDGTPFW +S V G THF+ +Q I RK
Sbjct: 411 RNSLREAKDCLVTLKNYRKDGTPFWNELAISPVRDT-TGEVTHFIGIQTDISERK 464
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
V+ D D P++Y + F ++TGY +++ G+NCRFL G DTD +
Sbjct: 359 IVISDAKAKDNPIIYCNPTFERITGYSSSDIQGRNCRFLQGNDTDPQAI 407
>gi|429221706|ref|YP_007174032.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
protein [Deinococcus peraridilitoris DSM 19664]
gi|429132569|gb|AFZ69583.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
protein [Deinococcus peraridilitoris DSM 19664]
Length = 297
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 72/131 (54%), Gaps = 6/131 (4%)
Query: 12 FNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQG 71
F+ T VH A + L I + PI++ + F ++G+ +EI+GRN R QG
Sbjct: 7 FSQILTRAVHAATNGL-----IVTQADGDFPILYCNPAFETLTGYPASEILGRNCRFLQG 61
Query: 72 PRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
P T+ T ++REA+ ++V +LNY++DGTPFW ++ + E GR THFV VQ
Sbjct: 62 PGTDAYTRTQMREALCAGLSLDVVILNYRRDGTPFWNALNLAPIH-DEQGRVTHFVGVQT 120
Query: 132 PIVSRKHMRNS 142
+ R ++ +
Sbjct: 121 DVTDRVRLQRA 131
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 263 DMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYPKKKSIYMEY 322
D P++Y + AF LTGY +E++G+NCRFL G TD Q+ A+ + + Y
Sbjct: 30 DFPILYCNPAFETLTGYPASEILGRNCRFLQGPGTDAYTRTQMREALCAGLSLDVVILNY 89
Query: 323 VR 324
R
Sbjct: 90 RR 91
>gi|448572980|ref|ZP_21640658.1| PAS-PAC-PAC sensing histidine kinase [Haloferax lucentense DSM
14919]
gi|445719345|gb|ELZ71026.1| PAS-PAC-PAC sensing histidine kinase [Haloferax lucentense DSM
14919]
Length = 858
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+D TIT+ P+ + + F +M+G+ +E+IGRN R QG T+ + +
Sbjct: 149 AMDSATVGITITEAD-DDQPLTYVNDAFEEMTGYDSSEVIGRNCRFLQGDDTDPEAVETL 207
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
EA+ V L NY+KDGTPFW K+S V+ +DG THFV Q R +RN
Sbjct: 208 HEAVDAGESAAVGLTNYRKDGTPFWNDLKISPVY--DDGELTHFVGFQTDATVRHALRN 264
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%)
Query: 263 DMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
D P+ Y +DAF ++TGYD +EV+G+NCRFL G DTD + + A+
Sbjct: 165 DQPLTYVNDAFEEMTGYDSSEVIGRNCRFLQGDDTDPEAVETLHEAV 211
>gi|300863837|ref|ZP_07108762.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
gi|300338185|emb|CBN53908.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
Length = 1432
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT-NRRTIME 81
A+ + ITD + +PI++ + F KM+G+SR+E+IGRN R Q + + +
Sbjct: 482 AISASSNGIVITDNTQPDNPIIYCNAAFEKMTGYSRSEVIGRNCRFLQSTDAESEKARQK 541
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
IREA+R E+ V L NY+KDGT FW +S V GR THFV VQ I RK
Sbjct: 542 IREALRLEQECHVILKNYRKDGTYFWNELAISPVRDSR-GRLTHFVGVQTDITDRKQAEE 600
Query: 142 S 142
+
Sbjct: 601 A 601
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
V+ D PD P++Y + AF K+TGY R+EV+G+NCRFL D ++
Sbjct: 490 IVITDNTQPDNPIIYCNAAFEKMTGYSRSEVIGRNCRFLQSTDAES 535
>gi|448597109|ref|ZP_21654247.1| PAS-PAC-PAC sensing histidine kinase [Haloferax alexandrinus JCM
10717]
gi|445740990|gb|ELZ92495.1| PAS-PAC-PAC sensing histidine kinase [Haloferax alexandrinus JCM
10717]
Length = 858
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+D TIT+ P+ + + F +M+G+ +E+IGRN R QG T+ + +
Sbjct: 149 AMDSATVGITITEAD-DDQPLTYVNDAFEEMTGYDSSEVIGRNCRFLQGDDTDPEAVETL 207
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
EA+ V L NY+KDGTPFW K+S V+ +DG THFV Q R +RN
Sbjct: 208 HEAVDAGESAAVGLTNYRKDGTPFWNDLKISPVY--DDGELTHFVGFQTDATVRHALRN 264
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%)
Query: 263 DMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
D P+ Y +DAF ++TGYD +EV+G+NCRFL G DTD + + A+
Sbjct: 165 DQPLTYVNDAFEEMTGYDSSEVIGRNCRFLQGDDTDPEAVETLHEAV 211
>gi|158334589|ref|YP_001515761.1| PAS sensor diguanylate cyclase/phophodiesterase [Acaryochloris
marina MBIC11017]
gi|158304830|gb|ABW26447.1| PAS sensor diguanylate cyclase/phophodiesterase, putative
[Acaryochloris marina MBIC11017]
Length = 935
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 64/109 (58%), Gaps = 1/109 (0%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88
D I+D ++ G P++FAS F + +G++ E+IG + QGP+T+ T+ EIR+A++
Sbjct: 151 DGIVISDATVPGFPVIFASPSFYQFTGYTPDEVIGNSCHFLQGPKTDPNTVDEIRQALKN 210
Query: 89 ERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
++ E +LNY+K G PFW L ++ + + G V +Q I +K
Sbjct: 211 DQTFEGEILNYRKMGQPFWNLLRIKPLTNAQ-GEVHFLVGIQTDITQQK 258
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 34/55 (61%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
V+ D +P P+++AS +F + TGY +EV+G +C FL G TD + ++ A+
Sbjct: 154 VISDATVPGFPVIFASPSFYQFTGYTPDEVIGNSCHFLQGPKTDPNTVDEIRQAL 208
>gi|347838679|emb|CCD53251.1| similar to regulator of G protein [Botryotinia fuckeliana]
Length = 593
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 92/183 (50%), Gaps = 37/183 (20%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L D F +TDP + +PIVFAS GF+ ++G+SR++II RN R QG T+R+ +R +I
Sbjct: 253 LGDCFCLTDPRRADNPIVFASDGFVSVTGYSRSDIIPRNCRFLQGSFTDRQATKRLRTSI 312
Query: 87 RE-ERPIEVNLLNYKKDGTPFWMLFKMS-LVFGKEDGRATHFVAVQVPIVSRKHMRNSGM 144
E +E+ LLNY+K+G PFW L +S L+ G D R F+ Q+ + H R
Sbjct: 313 ENREETVEL-LLNYRKNGDPFWNLLYVSPLLDGNGDVR--FFLGGQINCSTTIHSRT--- 366
Query: 145 SYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIEDSCEASDLEKRKA 204
D+ R+L+L+ +DTG IE S + + +++
Sbjct: 367 -----------------------------DVLRILSLNDEDTGSFIEGSNKTPSVRSKES 397
Query: 205 ATA 207
A
Sbjct: 398 NNA 400
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 36/56 (64%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
F L DP D P+V+ASD F+ +TGY R++++ +NCRFL G TD ++ +I
Sbjct: 257 FCLTDPRRADNPIVFASDGFVSVTGYSRSDIIPRNCRFLQGSFTDRQATKRLRTSI 312
>gi|254508393|ref|ZP_05120514.1| two-component hybrid sensor and regulator [Vibrio parahaemolyticus
16]
gi|219548706|gb|EED25710.1| two-component hybrid sensor and regulator [Vibrio parahaemolyticus
16]
Length = 1594
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 84/171 (49%), Gaps = 5/171 (2%)
Query: 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
++A+D ++D + PI+FA++ F +G+SR E++G+N R Q +++ I
Sbjct: 419 NKAIDSTTSGIVVSDATQPDLPIIFANKAFEMQTGYSRQEVLGKNCRFLQNDDRDQKGID 478
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140
++R+AI + V + NY+KDGT F+ K+ VF E G THF+ +Q + K
Sbjct: 479 QLRDAIANQTSCSVVIRNYRKDGTLFYNNLKIDPVFN-EQGEMTHFIGIQTDVTEMKRRE 537
Query: 141 NSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIE 191
+ E R E+ R D+ LD V+ DD G+ I+
Sbjct: 538 AENTTKLEQEIARRTEEVRESETRLRTVFDTALDGTVVI----DDKGIIID 584
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
V+ D PD+P+++A+ AF TGY R EV+G+NCRFL D D + Q+ AI+
Sbjct: 429 IVVSDATQPDLPIIFANKAFEMQTGYSRQEVLGKNCRFLQNDDRDQKGIDQLRDAIA 485
>gi|307111881|gb|EFN60115.1| hypothetical protein CHLNCDRAFT_12895, partial [Chlorella
variabilis]
Length = 108
Score = 85.9 bits (211), Expect = 2e-14, Method: Composition-based stats.
Identities = 40/75 (53%), Positives = 51/75 (68%)
Query: 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTT 300
SSL +L R++ F L DP+LPD P+VYAS +FLKLTGY EVVG+NCRFL G TD
Sbjct: 1 SSLLTALSRVQDCFCLSDPNLPDCPIVYASPSFLKLTGYSSEEVVGRNCRFLQGPGTDPA 60
Query: 301 VLYQVSIAISPYPKK 315
+ Q+ A++ P K
Sbjct: 61 AVAQLRQALAAVPPK 75
Score = 79.7 bits (195), Expect = 2e-12, Method: Composition-based stats.
Identities = 38/98 (38%), Positives = 59/98 (60%), Gaps = 7/98 (7%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL + D F ++DP++ PIV+AS FLK++G+S E++GRN R QGP T+ + ++
Sbjct: 6 ALSRVQDCFCLSDPNLPDCPIVYASPSFLKLTGYSSEEVVGRNCRFLQGPGTDPAAVAQL 65
Query: 83 REAIRE--ERPIEVNLLNYKKDGT-----PFWMLFKMS 113
R+A+ +P+ V LLNY+K PFW +S
Sbjct: 66 RQALAAVPPKPVTVTLLNYRKADAEGRQQPFWNSLHIS 103
>gi|298707248|emb|CBJ25875.1| aureochrome 1 [Ectocarpus siliculosus]
Length = 621
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 66/113 (58%), Gaps = 3/113 (2%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+AL +F ITD S+ +PIVFAS GFL ++ + E++GRN R QG T+ + + +
Sbjct: 440 KALQTAQQNFVITDASLPDNPIVFASGGFLALTRYKLVEVLGRNCRFLQGAETDPKAVDK 499
Query: 82 IREAIREERPIEVNLLNYKKDGTPFW-MLFKMSLVFGKEDGRATHFVAVQVPI 133
IR+AI E V LLNY+ DGT FW F SL GK G ++V VQ +
Sbjct: 500 IRKAIDEGYDTSVCLLNYRADGTTFWNQFFVASLRDGK--GNTVNYVGVQCKV 550
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 44/68 (64%)
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTV 301
SL +L +Q+FV+ D LPD P+V+AS FL LT Y EV+G+NCRFL G +TD
Sbjct: 437 SLVKALQTAQQNFVITDASLPDNPIVFASGGFLALTRYKLVEVLGRNCRFLQGAETDPKA 496
Query: 302 LYQVSIAI 309
+ ++ AI
Sbjct: 497 VDKIRKAI 504
>gi|414070614|ref|ZP_11406596.1| sensor protein [Pseudoalteromonas sp. Bsw20308]
gi|410806922|gb|EKS12906.1| sensor protein [Pseudoalteromonas sp. Bsw20308]
Length = 1098
Score = 85.9 bits (211), Expect = 3e-14, Method: Composition-based stats.
Identities = 39/105 (37%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 32 TITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP 91
+I D + G P+VF + F K++G+ + ++IG+N R+ QGP T++++I I+ AI+ +
Sbjct: 446 SIADAKVPGLPLVFLNSEFEKITGYKKEDMIGKNCRVLQGPNTDKKSISVIKNAIKTLKT 505
Query: 92 IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+ ++NYKKDGT FW ++S VF E + T FV +Q I +
Sbjct: 506 QRIEIVNYKKDGTAFWNSLQISPVF-DEHSKLTAFVGIQQDITKQ 549
Score = 48.9 bits (115), Expect = 0.004, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 256 LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ D +P +P+V+ + F K+TGY + +++G+NCR L G +TD + + AI
Sbjct: 447 IADAKVPGLPLVFLNSEFEKITGYKKEDMIGKNCRVLQGPNTDKKSISVIKNAI 500
>gi|218533250|ref|YP_002424066.1| multi-sensor hybrid histidine kinase [Methylobacterium extorquens
CM4]
gi|218525553|gb|ACK86138.1| multi-sensor hybrid histidine kinase [Methylobacterium extorquens
CM4]
Length = 890
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
IT+P + +PIVF + F +++G+SR EI+GRN R QGP T+ + ++EAI R
Sbjct: 49 MVITNPRLPDNPIVFVNDSFCRLTGYSREEIVGRNCRFLQGPDTDPADVTCLQEAIAAPR 108
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
IE+++ NY+KDGT FW M+ V G +F A Q+ + + +
Sbjct: 109 SIEIDIRNYRKDGTSFWNRLLMAPVKDAR-GALAYFFASQLDVTTERE 155
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 36/48 (75%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+ V+ +P LPD P+V+ +D+F +LTGY R E+VG+NCRFL G DTD
Sbjct: 46 RMPMVITNPRLPDNPIVFVNDSFCRLTGYSREEIVGRNCRFLQGPDTD 93
>gi|428309474|ref|YP_007120451.1| PAS domain-containing protein [Microcoleus sp. PCC 7113]
gi|428251086|gb|AFZ17045.1| PAS domain S-box [Microcoleus sp. PCC 7113]
Length = 494
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 71/129 (55%), Gaps = 2/129 (1%)
Query: 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
++A+ D I D PI + + F +++G+ E++GRN R QG T++ +
Sbjct: 160 NQAIAASSDGIVIADARKPDMPITYVNPAFERLTGYQAEEVVGRNCRFLQGKDTDQPALN 219
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140
E+REAIRE + +V L NY+K+GT FW +S ++ E G THFV +Q I RK +
Sbjct: 220 ELREAIREGKGCKVILSNYRKNGTLFWNELSVSPIYDAE-GNLTHFVGIQSDITERK-VA 277
Query: 141 NSGMSYSED 149
+ Y ++
Sbjct: 278 QEALHYQQE 286
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 39/69 (56%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYP 313
V+ D PDMP+ Y + AF +LTGY EVVG+NCRFL G DTD L ++ AI
Sbjct: 170 IVIADARKPDMPITYVNPAFERLTGYQAEEVVGRNCRFLQGKDTDQPALNELREAIREGK 229
Query: 314 KKKSIYMEY 322
K I Y
Sbjct: 230 GCKVILSNY 238
>gi|448543401|ref|ZP_21624966.1| PAS-PAC-PAC sensing histidine kinase [Haloferax sp. ATCC BAA-646]
gi|448550427|ref|ZP_21628806.1| PAS-PAC-PAC sensing histidine kinase [Haloferax sp. ATCC BAA-645]
gi|448559347|ref|ZP_21633518.1| PAS-PAC-PAC sensing histidine kinase [Haloferax sp. ATCC BAA-644]
gi|445706538|gb|ELZ58416.1| PAS-PAC-PAC sensing histidine kinase [Haloferax sp. ATCC BAA-646]
gi|445711358|gb|ELZ63151.1| PAS-PAC-PAC sensing histidine kinase [Haloferax sp. ATCC BAA-644]
gi|445711428|gb|ELZ63220.1| PAS-PAC-PAC sensing histidine kinase [Haloferax sp. ATCC BAA-645]
Length = 858
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+D TIT+ P+ + + F +M+G+ +E+IGRN R QG T+ + +
Sbjct: 149 AMDSATVGITITEAG-DDQPLTYVNDAFEEMTGYDSSEVIGRNCRFLQGDDTDPEAVETL 207
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
EA+ V L NY+KDGTPFW K+S V+ +DG THFV Q R +RN
Sbjct: 208 HEAVDAGESAAVGLTNYRKDGTPFWNDLKISPVY--DDGELTHFVGFQTDATVRHALRN 264
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%)
Query: 263 DMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
D P+ Y +DAF ++TGYD +EV+G+NCRFL G DTD + + A+
Sbjct: 165 DQPLTYVNDAFEEMTGYDSSEVIGRNCRFLQGDDTDPEAVETLHEAV 211
>gi|420240016|ref|ZP_14744286.1| PAS domain S-box [Rhizobium sp. CF080]
gi|398077991|gb|EJL68931.1| PAS domain S-box [Rhizobium sp. CF080]
Length = 349
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
++D S PIV A+ FL ++G+S EI+GRN R+ QG T+R + +IR AI ++R
Sbjct: 40 MVVSDARQSDFPIVLANDAFLDLTGYSADEILGRNCRLLQGEATSRTALAQIRAAITQQR 99
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+ +LNYKKDGTPFW +S + + G ++ A Q+ +
Sbjct: 100 EATIEILNYKKDGTPFWNQLHLSPIHDVQ-GELAYYFASQIDV 141
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 38/62 (61%)
Query: 249 RIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIA 308
R + V+ D D P+V A+DAFL LTGY +E++G+NCR L G T T L Q+ A
Sbjct: 35 RTRMPMVVSDARQSDFPIVLANDAFLDLTGYSADEILGRNCRLLQGEATSRTALAQIRAA 94
Query: 309 IS 310
I+
Sbjct: 95 IT 96
>gi|395490894|ref|ZP_10422473.1| multi-sensor hybrid histidine kinase [Sphingomonas sp. PAMC 26617]
Length = 557
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 60/105 (57%), Gaps = 1/105 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
ITDP +PIVFA++ F +++G++ E++G N R QGP T T+ + AI
Sbjct: 37 MVITDPRKPDNPIVFANKSFYRLTGYAHDEVLGHNCRFLQGPETEPATVELVCAAIAARE 96
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135
PIE+++ NY KDG PFW ++ VF DG +F A Q + +
Sbjct: 97 PIEIDIRNYTKDGHPFWNRLLIAPVF-DTDGSIAYFFASQFDVTA 140
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 39/60 (65%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
+ V+ DP PD P+V+A+ +F +LTGY +EV+G NCRFL G +T+ + V AI+
Sbjct: 34 RMPMVITDPRKPDNPIVFANKSFYRLTGYAHDEVLGHNCRFLQGPETEPATVELVCAAIA 93
>gi|448658338|ref|ZP_21682771.1| PAS/PAC sensor signal transduction histidine kinase [Haloarcula
californiae ATCC 33799]
gi|445761732|gb|EMA12978.1| PAS/PAC sensor signal transduction histidine kinase [Haloarcula
californiae ATCC 33799]
Length = 833
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P TI D + +P+V+A+ F +++G+ ++G+N R QG T+ + E+
Sbjct: 260 AIDEAPVGITIADANQPDNPLVYANDKFSELTGYQEENVVGQNSRFLQGENTDPSPVAEM 319
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
REAI E P+ V L NY+KDGT FW ++ V G T+++ Q + R
Sbjct: 320 REAIDAEEPVTVELQNYRKDGTEFWNRVTIAPVTDGT-GAVTNYIGFQEDMTER 372
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 36/56 (64%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ D + PD P+VYA+D F +LTGY VVGQN RFL G +TD + + ++ AI
Sbjct: 268 ITIADANQPDNPLVYANDKFSELTGYQEENVVGQNSRFLQGENTDPSPVAEMREAI 323
>gi|397570935|gb|EJK47540.1| hypothetical protein THAOC_33732 [Thalassiosira oceanica]
Length = 575
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
E+L +F ++DP + +PIVFAS GF +++G++R +++GRN R QG T+R+ I
Sbjct: 466 ESLTSGQQNFVLSDPRLQDNPIVFASPGFYELTGYTREQVLGRNCRFLQGNGTDRKAIEV 525
Query: 82 IREAIREERPIEVNLLNYKKDGTPFW-MLFKMSL 114
I+ A+ V LLNYK DGTPFW LF +L
Sbjct: 526 IKTAVANGTDATVCLLNYKADGTPFWNQLFVAAL 559
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 45/69 (65%)
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTV 301
SL SL +Q+FVL DP L D P+V+AS F +LTGY R +V+G+NCRFL G TD
Sbjct: 463 SLIESLTSGQQNFVLSDPRLQDNPIVFASPGFYELTGYTREQVLGRNCRFLQGNGTDRKA 522
Query: 302 LYQVSIAIS 310
+ + A++
Sbjct: 523 IEVIKTAVA 531
>gi|440718889|ref|ZP_20899327.1| signal transduction histidine kinase with CheB and CheR activity
[Rhodopirellula baltica SWK14]
gi|436435877|gb|ELP29686.1| signal transduction histidine kinase with CheB and CheR activity
[Rhodopirellula baltica SWK14]
Length = 1739
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+D + F I D PIV+A++GF ++GF+ EI+GRN R QGP T+ + I
Sbjct: 985 AIDAASNGFVIVDAQAKDTPIVYANQGFFNLTGFAPEEIVGRNCRFLQGPLTDPSNVDMI 1044
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
R+AI++++ V LLNY++DG+ F ++ + + G THFV VQ
Sbjct: 1045 RDAIKKKKECRVTLLNYRRDGSQFHNDLIITPIQDSQ-GVVTHFVGVQ 1091
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYP 313
FV++D D P+VYA+ F LTG+ E+VG+NCRFL G TD + + + AI
Sbjct: 993 FVIVDAQAKDTPIVYANQGFFNLTGFAPEEIVGRNCRFLQGPLTDPSNVDMIRDAIKKKK 1052
Query: 314 KKKSIYMEYVR 324
+ + + Y R
Sbjct: 1053 ECRVTLLNYRR 1063
>gi|428312366|ref|YP_007123343.1| PAS domain-containing protein [Microcoleus sp. PCC 7113]
gi|428253978|gb|AFZ19937.1| PAS domain S-box [Microcoleus sp. PCC 7113]
Length = 621
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 66/109 (60%), Gaps = 1/109 (0%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88
+ I+DP +G+P+++A+ GF +++G+ R +I+G+N R QG T + + E+ AI +
Sbjct: 193 NGILISDPHQAGNPVIYANSGFERITGYKREDILGKNCRFLQGTDTKQPALDELHRAIAK 252
Query: 89 ERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+ +V L NY+KDGT FW F ++ V E G THF+ VQ I K
Sbjct: 253 GQGTQVVLRNYRKDGTLFWNEFCLNPV-RDEAGHLTHFIGVQTDITEHK 300
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 37/57 (64%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
++ DPH P++YA+ F ++TGY R +++G+NCRFL G DT L ++ AI+
Sbjct: 195 ILISDPHQAGNPVIYANSGFERITGYKREDILGKNCRFLQGTDTKQPALDELHRAIA 251
>gi|229819115|ref|YP_002880641.1| PAS/PAC sensor protein [Beutenbergia cavernae DSM 12333]
gi|229565028|gb|ACQ78879.1| putative PAS/PAC sensor protein [Beutenbergia cavernae DSM 12333]
Length = 580
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
S +TD PIV+ + F + +G++R +GRN R QGP T+ + + A+R +
Sbjct: 17 SIVVTDAREDDEPIVWVNEAFTRTTGYARDAALGRNCRFLQGPATDPAAVARLGLAVRAD 76
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
P+ LLNY+ DGTPFW +S V + G TH V VQV + +R
Sbjct: 77 EPVAAALLNYRPDGTPFWNDVSISPVR-DDAGAVTHHVGVQVDVTARA 123
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPY 312
S V+ D D P+V+ ++AF + TGY R+ +G+NCRFL G TD + ++ +A+
Sbjct: 17 SIVVTDAREDDEPIVWVNEAFTRTTGYARDAALGRNCRFLQGPATDPAAVARLGLAVRAD 76
Query: 313 PKKKSIYMEY 322
+ + Y
Sbjct: 77 EPVAAALLNY 86
>gi|119488887|ref|ZP_01621849.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
gi|119455048|gb|EAW36190.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
Length = 1261
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 67/121 (55%), Gaps = 1/121 (0%)
Query: 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTN 75
Y + A+D + I D ++ P+ + + GF + +G+S E+IG N R QG +
Sbjct: 337 YLRLLQRAVDASSNGIVIADAQLTDKPLTYVNSGFERTTGYSADEVIGENCRFLQGEDID 396
Query: 76 RRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135
+ ++E+R +I E R ++ + NY+KDGTPFW +S V E+G THF+ +Q I
Sbjct: 397 QPNLIEMRNSIAEGRETKIIVRNYRKDGTPFWNKLSISPVHD-EEGNLTHFIGIQEDISD 455
Query: 136 R 136
R
Sbjct: 456 R 456
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYP 313
V+ D L D P+ Y + F + TGY +EV+G+NCRFL G D D L ++ +I+
Sbjct: 352 IVIADAQLTDKPLTYVNSGFERTTGYSADEVIGENCRFLQGEDIDQPNLIEMRNSIAEGR 411
Query: 314 KKKSIYMEY 322
+ K I Y
Sbjct: 412 ETKIIVRNY 420
>gi|242345215|dbj|BAH80321.1| aureochrome2-like protein [Fucus distichus subsp. evanescens]
Length = 409
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 68/113 (60%), Gaps = 3/113 (2%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+AL SF +TDP + +PIV+AS F++++G+ R++++GRN R QGP T+ + +
Sbjct: 248 KALQSSQPSFCVTDPQLPDNPIVYASNTFIELTGYDRSQVLGRNCRFLQGPDTDPDAVAK 307
Query: 82 IREAIREERPIEVNLLNYKKDGTPFW-MLFKMSLVFGKEDGRATHFVAVQVPI 133
IR+ I E + V L YK DGT FW +F +L D + ++V +Q P+
Sbjct: 308 IRKGIEEGKDTSVFLRQYKADGTVFWNHVFVAAL--RNNDHKIINYVGIQHPL 358
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 61/111 (54%), Gaps = 3/111 (2%)
Query: 199 LEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLID 258
+ R A + + I S ++H + L F+ L +L + SF + D
Sbjct: 205 INTRCANNSAEIIRSCVSHVPSMVADCANQATALLEQSDFL---LVKALQSSQPSFCVTD 261
Query: 259 PHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
P LPD P+VYAS+ F++LTGYDR++V+G+NCRFL G DTD + ++ I
Sbjct: 262 PQLPDNPIVYASNTFIELTGYDRSQVLGRNCRFLQGPDTDPDAVAKIRKGI 312
>gi|159487329|ref|XP_001701675.1| predicted protein [Chlamydomonas reinhardtii]
gi|158280894|gb|EDP06650.1| predicted protein [Chlamydomonas reinhardtii]
Length = 104
Score = 85.5 bits (210), Expect = 3e-14, Method: Composition-based stats.
Identities = 38/102 (37%), Positives = 64/102 (62%)
Query: 32 TITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP 91
TI D S+ P+++A+ GF++ +G+S A ++G+N R QG T+ + ++++++AI E +
Sbjct: 2 TIADCSLPDMPLIYANAGFVRTTGYSAAYVLGKNCRFLQGEGTDSQPVLDLKKAISEGKS 61
Query: 92 IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
V LLNYKK+G PF ++ + GR TH+V VQ I
Sbjct: 62 CVVQLLNYKKNGDPFVNYLSLTPIHDAATGRLTHYVGVQSDI 103
Score = 57.4 bits (137), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/55 (45%), Positives = 36/55 (65%)
Query: 256 LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
+ D LPDMP++YA+ F++ TGY V+G+NCRFL G TD+ + + AIS
Sbjct: 3 IADCSLPDMPLIYANAGFVRTTGYSAAYVLGKNCRFLQGEGTDSQPVLDLKKAIS 57
>gi|119493187|ref|ZP_01624062.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
domains) with PAS/PAC sensors [Lyngbya sp. PCC 8106]
gi|119452752|gb|EAW33929.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
domains) with PAS/PAC sensors [Lyngbya sp. PCC 8106]
Length = 1090
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++ + ITD + + HPI++ + GF +++G+S+ E+I +N R QGP+T+ + +
Sbjct: 396 AINASSNGIIITDATETDHPIIYVNAGFERITGYSKEEVIEQNCRFLQGPQTDSSLVERL 455
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
R A+ + R V + NY+KDG FW +++ VF + G THF+ VQ I R
Sbjct: 456 RTALLQGRECRVVIQNYRKDGRLFWNDLQIAPVFN-DRGHLTHFIGVQNDITER 508
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 240 SSSLYISLGRIKQS---FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296
+ SLY+ I S ++ D D P++Y + F ++TGY + EV+ QNCRFL G
Sbjct: 387 TESLYLMERAINASSNGIIITDATETDHPIIYVNAGFERITGYSKEEVIEQNCRFLQGPQ 446
Query: 297 TDTTVLYQVSIAI 309
TD++++ ++ A+
Sbjct: 447 TDSSLVERLRTAL 459
>gi|156062526|ref|XP_001597185.1| hypothetical protein SS1G_01379 [Sclerotinia sclerotiorum 1980]
gi|154696715|gb|EDN96453.1| hypothetical protein SS1G_01379 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 535
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 72/116 (62%), Gaps = 5/116 (4%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L D F +TDP + +PIVFAS GF+ ++G+SR +II RN R QG T+R++ +R +I
Sbjct: 198 LGDCFCLTDPKRADNPIVFASDGFVSVTGYSRTDIIPRNCRFLQGAYTDRQSTKRLRTSI 257
Query: 87 RE-ERPIEVNLLNYKKDGTPFWMLFKMS-LVFGKEDGRATHFVAVQVPIVSRKHMR 140
+ E +E+ LLNY+K+G PFW L +S L+ G D R F+ Q+ + H R
Sbjct: 258 QNCEETVEL-LLNYRKNGDPFWNLLYVSPLLDGNGDVR--FFLGGQINCSTTIHSR 310
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 31/45 (68%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
F L DP D P+V+ASD F+ +TGY R +++ +NCRFL G TD
Sbjct: 202 FCLTDPKRADNPIVFASDGFVSVTGYSRTDIIPRNCRFLQGAYTD 246
>gi|392956616|ref|ZP_10322142.1| blue light GTP-binding receptor [Bacillus macauensis ZFHKF-1]
gi|391877113|gb|EIT85707.1| blue light GTP-binding receptor [Bacillus macauensis ZFHKF-1]
Length = 263
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 70/123 (56%), Gaps = 1/123 (0%)
Query: 18 LWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRR 77
+ + A+D ITD S+ +PIV+ + GFL M+G+S E++G N R QG T+R
Sbjct: 13 ILLERAMDYSRVGIAITDASLEDNPIVYVNEGFLTMTGYSEDEVLGLNCRFLQGIDTDRS 72
Query: 78 TIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+ IRE + ++ I V + NYKK+GT FW + F +E+ R +F+ VQ I +++
Sbjct: 73 IVATIREKLLKKERISVTIKNYKKNGTFFWNELTIDPFFMEEENRY-YFIGVQKDITNQR 131
Query: 138 HMR 140
+
Sbjct: 132 EYQ 134
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 10/74 (13%)
Query: 256 LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLY----------QV 305
+ D L D P+VY ++ FL +TGY +EV+G NCRFL G+DTD +++ ++
Sbjct: 28 ITDASLEDNPIVYVNEGFLTMTGYSEDEVLGLNCRFLQGIDTDRSIVATIREKLLKKERI 87
Query: 306 SIAISPYPKKKSIY 319
S+ I Y K + +
Sbjct: 88 SVTIKNYKKNGTFF 101
>gi|299115890|emb|CBN75899.1| n/a (Partial) [Ectocarpus siliculosus]
Length = 261
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 54/81 (66%), Gaps = 2/81 (2%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+F +T+PS++ +PIVFAS GF K++G++ E G R QGP T+R++I +R+AI
Sbjct: 121 NFVVTEPSLADNPIVFASDGFFKLTGYTSKE--GATARFLQGPDTDRKSIATLRQAITRG 178
Query: 90 RPIEVNLLNYKKDGTPFWMLF 110
+ V LLNYK DGT FW F
Sbjct: 179 EDVSVCLLNYKADGTTFWNQF 199
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L S+ +Q+FV+ +P L D P+V+ASD F KLTGY E G RFL G DTD +
Sbjct: 111 LMKSIEMAQQNFVVTEPSLADNPIVFASDGFFKLTGYTSKE--GATARFLQGPDTDRKSI 168
Query: 303 YQVSIAIS 310
+ AI+
Sbjct: 169 ATLRQAIT 176
>gi|448407766|ref|ZP_21573961.1| light and redox sensing histidine kinase [Halosimplex carlsbadense
2-9-1]
gi|445675016|gb|ELZ27551.1| light and redox sensing histidine kinase [Halosimplex carlsbadense
2-9-1]
Length = 972
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 64/113 (56%), Gaps = 1/113 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++E P TI DP+ +PIV+A+ F +++G+ AE++GRN R QG T + +
Sbjct: 260 AMNEAPVGITIADPTRDDNPIVYANERFEQLTGYDEAEVLGRNCRFLQGADTAGEPVAAM 319
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135
R AI P+ V L NY+KDGT FW ++ V E G T++V Q + +
Sbjct: 320 RSAIDAGEPVTVELRNYRKDGTEFWNRVSIAPVRSAE-GTITNYVGFQRDVTA 371
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 31/44 (70%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDT 297
+ DP D P+VYA++ F +LTGYD EV+G+NCRFL G DT
Sbjct: 268 ITIADPTRDDNPIVYANERFEQLTGYDEAEVLGRNCRFLQGADT 311
>gi|399546031|ref|YP_006559339.1| two-component response regulator [Marinobacter sp. BSs20148]
gi|399161363|gb|AFP31926.1| Two-component response regulator [Marinobacter sp. BSs20148]
Length = 555
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 63/110 (57%), Gaps = 1/110 (0%)
Query: 28 PDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIR 87
P+ + D P+V+A+ F +++G++ +EI+G + + G T+ + I +R
Sbjct: 310 PNGIVMADARHPEMPMVYANPAFSEITGYTHSEIVGHSWHVLHGENTSPEAVEAIERGLR 369
Query: 88 EERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+ I V L+NY+KDGTPFW ++S VFG +D R THF+ Q + +K
Sbjct: 370 HQTEINVELINYRKDGTPFWNHLRVSPVFG-DDSRCTHFIGTQQDVTRQK 418
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 10/82 (12%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL----------Y 303
V+ D P+MPMVYA+ AF ++TGY +E+VG + L+G +T +
Sbjct: 313 IVMADARHPEMPMVYANPAFSEITGYTHSEIVGHSWHVLHGENTSPEAVEAIERGLRHQT 372
Query: 304 QVSIAISPYPKKKSIYMEYVRV 325
++++ + Y K + + ++RV
Sbjct: 373 EINVELINYRKDGTPFWNHLRV 394
>gi|223997956|ref|XP_002288651.1| hypothetical protein THAPSDRAFT_261631 [Thalassiosira pseudonana
CCMP1335]
gi|220975759|gb|EED94087.1| hypothetical protein THAPSDRAFT_261631 [Thalassiosira pseudonana
CCMP1335]
Length = 150
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 68/124 (54%), Gaps = 12/124 (9%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
S +TDPS+ +PIV+ S GF +++G+S ++IGRN R QGP T R + +I A++
Sbjct: 15 SLCVTDPSLVDNPIVYVSNGFCQLTGYSYDDVIGRNCRFLQGPETRREDVDKIVVAVKGG 74
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSED 149
VNLLNYKKDGT F F ++ + ++F+ +Q + + ED
Sbjct: 75 VECSVNLLNYKKDGTTFRNEFYLAQLRSPTQ-DISYFIGIQ-----------AAVDVHED 122
Query: 150 GGGS 153
GG S
Sbjct: 123 GGDS 126
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 32/45 (71%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDT 297
S + DP L D P+VY S+ F +LTGY ++V+G+NCRFL G +T
Sbjct: 15 SLCVTDPSLVDNPIVYVSNGFCQLTGYSYDDVIGRNCRFLQGPET 59
>gi|392556351|ref|ZP_10303488.1| sensor protein [Pseudoalteromonas undina NCIMB 2128]
Length = 1101
Score = 85.1 bits (209), Expect = 4e-14, Method: Composition-based stats.
Identities = 42/116 (36%), Positives = 68/116 (58%), Gaps = 1/116 (0%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+A++ +I D S+ G P+VF + F K++G+S+ E++G N + QGP T++ I
Sbjct: 436 QAIESCNVGISIADASVQGFPLVFLNSEFEKITGYSKGEMLGINCSLLQGPNTDKNAIDI 495
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
I AI+ + + +LNYKKDGT FW ++S VF E + T +V +Q I +K
Sbjct: 496 ITHAIKTLKTQRIEILNYKKDGTEFWNSLQISPVF-NEQQQLTAYVGIQQDITEQK 550
Score = 42.4 bits (98), Expect = 0.29, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 256 LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYPKK 315
+ D + P+V+ + F K+TGY + E++G NC L G +TD + ++ AI +
Sbjct: 447 IADASVQGFPLVFLNSEFEKITGYSKGEMLGINCSLLQGPNTDKNAIDIITHAIKTLKTQ 506
Query: 316 KSIYMEY 322
+ + Y
Sbjct: 507 RIEILNY 513
>gi|433774732|ref|YP_007305199.1| PAS domain S-box [Mesorhizobium australicum WSM2073]
gi|433666747|gb|AGB45823.1| PAS domain S-box [Mesorhizobium australicum WSM2073]
Length = 382
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 68/112 (60%), Gaps = 1/112 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
S ITDP +PIVFA+ FL+++G+ R E++GRN R QGP +++ I +IR AI +E
Sbjct: 39 SMIITDPRRQDNPIVFANDAFLRLTGYERDEVLGRNCRFLQGPESDKEAIAQIRAAIADE 98
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
I V++LNY+KDG+ FW +S V + G F A Q+ + RK N
Sbjct: 99 TDISVDILNYRKDGSTFWNALYISPV-SNDKGEMQFFFASQLDVSDRKLWEN 149
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 39/48 (81%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+ S ++ DP D P+V+A+DAFL+LTGY+R+EV+G+NCRFL G ++D
Sbjct: 37 RMSMIITDPRRQDNPIVFANDAFLRLTGYERDEVLGRNCRFLQGPESD 84
>gi|427409042|ref|ZP_18899244.1| PAS domain S-box protein [Sphingobium yanoikuyae ATCC 51230]
gi|425713352|gb|EKU76366.1| PAS domain S-box protein [Sphingobium yanoikuyae ATCC 51230]
Length = 866
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 62/101 (61%), Gaps = 1/101 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
IT+P + +P+VFA+ F +++G+ R EI+GRN R QG T+ + I +A+ RPI
Sbjct: 44 ITNPRLHDNPVVFANDSFCRLTGYERDEILGRNCRFLQGSETDPTDVQAIHDAVEAVRPI 103
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
E+++ NY+K G PFW ++ VF G+ +F A QV +
Sbjct: 104 EIDIRNYRKCGEPFWNRLLLAPVFDGA-GKLAYFFASQVDV 143
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 43/59 (72%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ ++ +P L D P+V+A+D+F +LTGY+R+E++G+NCRFL G +TD T + + A+
Sbjct: 39 RMPMIITNPRLHDNPVVFANDSFCRLTGYERDEILGRNCRFLQGSETDPTDVQAIHDAV 97
>gi|345562874|gb|EGX45882.1| hypothetical protein AOL_s00112g71 [Arthrobotrys oligospora ATCC
24927]
Length = 892
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 72/127 (56%), Gaps = 1/127 (0%)
Query: 8 IEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGR 67
I++ ++ E+ +EL + F +TDP +PIVFAS F + + + + + GRN R
Sbjct: 441 IQKKITGSEVRYLEESSNELGEVFCLTDPQRHDNPIVFASEEFHRATQYPISYVSGRNCR 500
Query: 68 MFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFV 127
QGP+T R ++ +R+A+R+ I LNYK+DGTPF L ++ + + G+ +F+
Sbjct: 501 FLQGPKTQRHSVARLRDAVRQGHEITECFLNYKRDGTPFLNLVMVAPLLDSK-GQVRYFI 559
Query: 128 AVQVPIV 134
Q+ +
Sbjct: 560 GAQIDVT 566
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDT 297
S + + F L DP D P+V+AS+ F + T Y + V G+NCRFL G T
Sbjct: 456 SSNELGEVFCLTDPQRHDNPIVFASEEFHRATQYPISYVSGRNCRFLQGPKT 507
>gi|237799947|ref|ZP_04588408.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
syringae pv. oryzae str. 1_6]
gi|331022802|gb|EGI02859.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
syringae pv. oryzae str. 1_6]
Length = 747
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 72/117 (61%), Gaps = 6/117 (5%)
Query: 29 DSFTITDPS---ISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+ + G IV+ + FL ++GF+ AE+IG+ R+ Q T+R T+ IREA
Sbjct: 169 DAILITEAEPIDLPGPRIVYCNPAFLAITGFTEAEVIGQTPRILQCEDTSRETLDVIREA 228
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATHFVAVQVPIVSRKHMRN 141
+ RP+EV L+N +KDG+ FW+ ++S+V E G TH+V+VQ I RK ++
Sbjct: 229 LTHWRPVEVELVNTRKDGSQFWV--ELSIVPVANEKGWFTHWVSVQRDITERKESQH 283
>gi|424066358|ref|ZP_17803824.1| PAS:GGDEF domain-containing protein domain-containing protein
[Pseudomonas syringae pv. avellanae str. ISPaVe013]
gi|408002421|gb|EKG42678.1| PAS:GGDEF domain-containing protein domain-containing protein
[Pseudomonas syringae pv. avellanae str. ISPaVe013]
Length = 747
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 69/113 (61%), Gaps = 6/113 (5%)
Query: 29 DSFTITDPS---ISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+ + G IV+ + FL ++GF+ E+IGR R+ Q T+R T+ IREA
Sbjct: 169 DAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEDTSRATLDVIREA 228
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATHFVAVQVPIVSRK 137
+ RP+EV LLN +KDG+ FW+ ++S+V E G TH+V+VQ I RK
Sbjct: 229 LSHWRPVEVELLNTRKDGSQFWV--ELSIVPVANEKGWFTHWVSVQRDITERK 279
>gi|448394478|ref|ZP_21568283.1| bacterio-opsin activator [Haloterrigena salina JCM 13891]
gi|445662520|gb|ELZ15288.1| bacterio-opsin activator [Haloterrigena salina JCM 13891]
Length = 643
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 68/117 (58%), Gaps = 1/117 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++E P TI+DP +P+V+ + + +++G+ E++GRN R QG + + E+
Sbjct: 141 AINEAPVGITISDPDREDNPLVYVNDAYQEITGYGYDEVVGRNCRFLQGEDSQEVAVAEM 200
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
AI EERP+ V L NY++DGT FW ++ V EDG T++V Q + +RK
Sbjct: 201 AAAIDEERPVTVELKNYRRDGTEFWNEVTIAPVR-DEDGTVTNYVGFQNDVTARKEA 256
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDT 297
+ DP D P+VY +DA+ ++TGY +EVVG+NCRFL G D+
Sbjct: 149 ITISDPDREDNPLVYVNDAYQEITGYGYDEVVGRNCRFLQGEDS 192
>gi|424071007|ref|ZP_17808435.1| sensor y box/GGDEF domain-containing protein domain/EAL domain
protein [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
gi|407999749|gb|EKG40127.1| sensor y box/GGDEF domain-containing protein domain/EAL domain
protein [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
Length = 747
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 69/113 (61%), Gaps = 6/113 (5%)
Query: 29 DSFTITDPS---ISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+ + G IV+ + FL ++GF+ E+IGR R+ Q T+R T+ IREA
Sbjct: 169 DAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEDTSRATLDVIREA 228
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATHFVAVQVPIVSRK 137
+ RP+EV LLN +KDG+ FW+ ++S+V E G TH+V+VQ I RK
Sbjct: 229 LSHWRPVEVELLNTRKDGSQFWV--ELSIVPVANEKGWFTHWVSVQRDITERK 279
>gi|194709095|pdb|2Z6C|A Chain A, Crystal Structure Of Lov1 Domain Of Phototropin1 From
Arabidopsis Thaliana
gi|194709096|pdb|2Z6C|B Chain B, Crystal Structure Of Lov1 Domain Of Phototropin1 From
Arabidopsis Thaliana
Length = 129
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 3/123 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL +F ++D + +PI++AS GF M+G++ E++GRN R QG T+ +
Sbjct: 9 LKDALSTFQQTFVVSDATKPDYPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDADEL 68
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
+IRE + +LNYKKDGT FW L ++ + E G+ F+ +QV + KH
Sbjct: 69 AKIRETLAAGNNYCGRILNYKKDGTSFWNLLTIAPI-KDESGKVLKFIGMQVEV--SKHT 125
Query: 140 RNS 142
+
Sbjct: 126 EGA 128
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 43/71 (60%)
Query: 235 GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG 294
G+ +S L +L +Q+FV+ D PD P++YAS F +TGY EVVG+NCRFL G
Sbjct: 1 GIPRVSEDLKDALSTFQQTFVVSDATKPDYPIMYASAGFFNMTGYTSKEVVGRNCRFLQG 60
Query: 295 VDTDTTVLYQV 305
TD L ++
Sbjct: 61 SGTDADELAKI 71
>gi|428318054|ref|YP_007115936.1| PAS/PAC sensor signal transduction histidine kinase [Oscillatoria
nigro-viridis PCC 7112]
gi|428241734|gb|AFZ07520.1| PAS/PAC sensor signal transduction histidine kinase [Oscillatoria
nigro-viridis PCC 7112]
Length = 1113
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL + I D + PIV+ + F +++G+ R+EIIG+N R QGP T+ + I
Sbjct: 34 ALAATSNGIAIADATRPDKPIVYCNGAFERITGYDRSEIIGKNCRFLQGPDTDGAAVDRI 93
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
R A++E+ +V L NY+KDGT FW +S V G THF+ VQ I R
Sbjct: 94 RAALKEQHDCKVVLKNYRKDGTAFWNELTISPVR-DSSGIVTHFIGVQSDITDR 146
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
+L + D PD P+VY + AF ++TGYDR+E++G+NCRFL G DTD + ++
Sbjct: 34 ALAATSNGIAIADATRPDKPIVYCNGAFERITGYDRSEIIGKNCRFLQGPDTDGAAVDRI 93
Query: 306 SIAISPYPKKKSIYMEY 322
A+ K + Y
Sbjct: 94 RAALKEQHDCKVVLKNY 110
>gi|148753|gb|AAA72719.1| bacterio-opsin activator [Halobacterium salinarum]
Length = 674
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 65/116 (56%), Gaps = 1/116 (0%)
Query: 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
+ALDE P TI+D + PI++ + F ++G+S E++G N R QGP+TN
Sbjct: 161 EQALDEAPIGITISDATDPEEPIIYINDSFEDITGYSPDEVVGANHRFLQGPKTNEEPRG 220
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
AI E+ +V L NY++DG+ FW +S ++ EDG +H+V Q+ + R
Sbjct: 221 GFWTAITEDHDTQVVLRNYRRDGSLFWNQVDISPIY-DEDGTVSHYVGFQMDVSER 275
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 262 PDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
P+ P++Y +D+F +TGY +EVVG N RFL G T+
Sbjct: 179 PEEPIIYINDSFEDITGYSPDEVVGANHRFLQGPKTN 215
>gi|240140855|ref|YP_002965335.1| histidine kinase, domains HK, ATPase and sensory PAS
[Methylobacterium extorquens AM1]
gi|240010832|gb|ACS42058.1| putative histidine kinase, domains HK, ATPase and sensory PAS
[Methylobacterium extorquens AM1]
Length = 351
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 68/128 (53%), Gaps = 2/128 (1%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A + P +TDP +P+V+A+ FL ++G++R E+ G+N RM QGP T+ + +
Sbjct: 7 AFEASPTPMVVTDPRRGDNPVVWANGAFLGLTGYAREELYGQNCRMLQGPLTDAAVLQTM 66
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R A+ RP E LLNY+KDGT FW ++ V E G+ F + Q + KH
Sbjct: 67 RSALATGRPFEGELLNYRKDGTSFWNGMTINPVC-DEAGKVLFFFSAQADMTD-KHRLEL 124
Query: 143 GMSYSEDG 150
M + D
Sbjct: 125 AMRDANDA 132
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 36/57 (63%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
V+ DP D P+V+A+ AFL LTGY R E+ GQNCR L G TD VL + A++
Sbjct: 15 MVVTDPRRGDNPVVWANGAFLGLTGYAREELYGQNCRMLQGPLTDAAVLQTMRSALA 71
>gi|218532295|ref|YP_002423111.1| signal transduction histidine kinase [Methylobacterium extorquens
CM4]
gi|218524598|gb|ACK85183.1| signal transduction histidine kinase [Methylobacterium extorquens
CM4]
Length = 366
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A + P +TDP +P+V+A+ FL ++G++R E+ G+N RM QGP T+ + +
Sbjct: 22 AFEASPTPMVVTDPRRGDNPVVWANGAFLGLTGYAREELYGQNCRMLQGPLTDATVLQTM 81
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
R A+ RP E LLNY+KDGT FW ++ V E G+ F + Q + + +
Sbjct: 82 RSALATGRPFEGELLNYRKDGTSFWNGMTINPVC-DEAGKVLFFFSAQADMTDKHRL 137
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
V+ DP D P+V+A+ AFL LTGY R E+ GQNCR L G TD TVL + A++
Sbjct: 30 MVVTDPRRGDNPVVWANGAFLGLTGYAREELYGQNCRMLQGPLTDATVLQTMRSALA 86
>gi|418059569|ref|ZP_12697514.1| signal transduction histidine kinase [Methylobacterium extorquens
DSM 13060]
gi|373566905|gb|EHP92889.1| signal transduction histidine kinase [Methylobacterium extorquens
DSM 13060]
Length = 366
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A + P +TDP +P+V+A+ FL ++G++R E+ G+N RM QGP T+ + +
Sbjct: 22 AFEASPTPMVVTDPRRGDNPVVWANGAFLGLTGYAREELYGQNCRMLQGPLTDAAVLQTM 81
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
R A+ RP E LLNY+KDGT FW ++ V E G+ F + Q + + +
Sbjct: 82 RSALATGRPFEGELLNYRKDGTSFWNGMTINPVC-DEAGKVLFFFSAQADMTDKHRL 137
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 36/57 (63%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
V+ DP D P+V+A+ AFL LTGY R E+ GQNCR L G TD VL + A++
Sbjct: 30 MVVTDPRRGDNPVVWANGAFLGLTGYAREELYGQNCRMLQGPLTDAAVLQTMRSALA 86
>gi|448356550|ref|ZP_21545283.1| multi-sensor signal transduction histidine kinase [Natrialba
chahannaoensis JCM 10990]
gi|445653583|gb|ELZ06454.1| multi-sensor signal transduction histidine kinase [Natrialba
chahannaoensis JCM 10990]
Length = 478
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 63/115 (54%), Gaps = 3/115 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P +TD S+ +PIV+A+ F ++G+ AE++GRN R QG RT + + +
Sbjct: 144 AMDEAPVGIVLTDSSLPDNPIVYANEEFYDLTGYPAAEVLGRNCRFLQGERTEQEPVDRM 203
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
R AI PI + NY+ DGT FW ++ + +D +FV Q I RK
Sbjct: 204 RTAIEAREPITTEVRNYRLDGTMFWNEVTIAPI---DDSETPYFVGFQHNITRRK 255
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 36/57 (63%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
VL D LPD P+VYA++ F LTGY EV+G+NCRFL G T+ + ++ AI
Sbjct: 152 IVLTDSSLPDNPIVYANEEFYDLTGYPAAEVLGRNCRFLQGERTEQEPVDRMRTAIE 208
>gi|66044410|ref|YP_234251.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
gi|63255117|gb|AAY36213.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
Length = 748
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 69/113 (61%), Gaps = 6/113 (5%)
Query: 29 DSFTITDPS---ISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+ + G IV+ + FL ++GF+ E+IGR R+ Q T+R T+ IREA
Sbjct: 170 DAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEDTSRATLDIIREA 229
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATHFVAVQVPIVSRK 137
+ RP+EV LLN +KDG+ FW+ ++S+V E G TH+V+VQ I RK
Sbjct: 230 LSHWRPVEVELLNTRKDGSQFWV--ELSIVPVANEKGWFTHWVSVQRDITERK 280
>gi|87200360|ref|YP_497617.1| hypothetical protein Saro_2346 [Novosphingobium aromaticivorans DSM
12444]
gi|87136041|gb|ABD26783.1| signal transduction histidine kinase [Novosphingobium
aromaticivorans DSM 12444]
Length = 364
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 68/132 (51%), Gaps = 1/132 (0%)
Query: 9 EQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM 68
E +F + +A+ + + + DP PIVFA+R F ++G+ E++GRN R
Sbjct: 35 EDTFEGASGVLFEQAMAQTRMAICLCDPHEKDLPIVFANRAFRHLTGYDEHEVVGRNCRF 94
Query: 69 FQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVA 128
QGP T+ + I+ A+ E I V LLNY+KDGT FW + V+ DGR +F
Sbjct: 95 LQGPGTDPAAVARIKAALEREDVIVVELLNYRKDGTAFWNALHLGPVY-DADGRLIYFFG 153
Query: 129 VQVPIVSRKHMR 140
Q + + +R
Sbjct: 154 SQWDVSDVRAVR 165
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 43/64 (67%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
++ + + + L DPH D+P+V+A+ AF LTGYD +EVVG+NCRFL G TD + ++
Sbjct: 49 AMAQTRMAICLCDPHEKDLPIVFANRAFRHLTGYDEHEVVGRNCRFLQGPGTDPAAVARI 108
Query: 306 SIAI 309
A+
Sbjct: 109 KAAL 112
>gi|254563364|ref|YP_003070459.1| histidine kinase [Methylobacterium extorquens DM4]
gi|254270642|emb|CAX26646.1| putative histidine kinase, domains HK, ATPase and sensory PAS
[Methylobacterium extorquens DM4]
Length = 351
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 68/128 (53%), Gaps = 2/128 (1%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A + P +TDP +P+V+A+ FL ++G++R E+ G+N RM QGP T+ + +
Sbjct: 7 AFEASPTPMVVTDPRRGDNPVVWANGAFLGLTGYAREELYGQNCRMLQGPLTDAAVLQTM 66
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R A+ RP E LLNY+KDGT FW ++ V E G+ F + Q + KH
Sbjct: 67 RAALATGRPFEGELLNYRKDGTSFWNGMTINPVC-DEAGKVLFFFSAQADMTD-KHRLEL 124
Query: 143 GMSYSEDG 150
M + D
Sbjct: 125 AMRDANDA 132
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 36/57 (63%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
V+ DP D P+V+A+ AFL LTGY R E+ GQNCR L G TD VL + A++
Sbjct: 15 MVVTDPRRGDNPVVWANGAFLGLTGYAREELYGQNCRMLQGPLTDAAVLQTMRAALA 71
>gi|422638481|ref|ZP_16701912.1| PAS:GGDEF protein [Pseudomonas syringae Cit 7]
gi|330950876|gb|EGH51136.1| PAS:GGDEF protein [Pseudomonas syringae Cit 7]
Length = 748
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 69/113 (61%), Gaps = 6/113 (5%)
Query: 29 DSFTITDPS---ISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+ + G IV+ + FL ++GF+ E+IGR R+ Q T+R T+ IREA
Sbjct: 170 DAILITEAEPIDLPGPRIVYCNPAFLAITGFTEDEVIGRTPRILQCEDTSRATLDVIREA 229
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATHFVAVQVPIVSRK 137
+ RP+EV LLN +KDG+ FW+ ++S+V E G TH+V+VQ I RK
Sbjct: 230 LSHWRPVEVELLNTRKDGSQFWV--ELSIVPVANEKGWFTHWVSVQRDITERK 280
Score = 37.4 bits (85), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 261 LPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPY 312
LP +VY + AFL +TG+ +EV+G+ R L DT L + A+S +
Sbjct: 182 LPGPRIVYCNPAFLAITGFTEDEVIGRTPRILQCEDTSRATLDVIREALSHW 233
>gi|163853435|ref|YP_001641478.1| PAS sensor protein [Methylobacterium extorquens PA1]
gi|163665040|gb|ABY32407.1| PAS sensor protein [Methylobacterium extorquens PA1]
Length = 366
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A + P +TDP +P+V+A+ FL ++G++R E+ G+N RM QGP T+ + +
Sbjct: 22 AFEASPTPMVVTDPRRGDNPVVWANGAFLGLTGYAREELYGQNCRMLQGPLTDAAVLQTM 81
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
R A+ RP E LLNY+KDGT FW ++ V E G+ F + Q + + +
Sbjct: 82 RAALATGRPFEGELLNYRKDGTSFWNGMTINPVC-DEAGKVLFFFSAQADMTDKHRL 137
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 36/57 (63%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
V+ DP D P+V+A+ AFL LTGY R E+ GQNCR L G TD VL + A++
Sbjct: 30 MVVTDPRRGDNPVVWANGAFLGLTGYAREELYGQNCRMLQGPLTDAAVLQTMRAALA 86
>gi|427725026|ref|YP_007072303.1| PAS/PAC and GAF sensor-containing diguanylate
cyclase/phosphodiesterase [Leptolyngbya sp. PCC 7376]
gi|427356746|gb|AFY39469.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(s) [Leptolyngbya sp. PCC 7376]
Length = 1052
Score = 84.7 bits (208), Expect = 5e-14, Method: Composition-based stats.
Identities = 40/133 (30%), Positives = 77/133 (57%), Gaps = 5/133 (3%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+H +++ + ITDP S +PI++A++GF +SG++ +EI+G+N +G +T + ++
Sbjct: 366 LHHSINAIDQGVIITDPRQSKNPIIYANQGFENISGYNASEILGKNCNFLRGEQTEKASL 425
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK-- 137
++R+A+ + +P V L NY+K G FW ++ V DG THF+ +Q I ++
Sbjct: 426 NKLRDAVLQGKPCHVILRNYRKSGDMFWNDLQIFPV-QDTDGTLTHFIGIQKDITEQRAI 484
Query: 138 --HMRNSGMSYSE 148
H+ S + +
Sbjct: 485 AEHLYESDFQFRQ 497
Score = 54.7 bits (130), Expect = 6e-05, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 15/103 (14%)
Query: 207 AIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPM 266
AI NI++ H Q T + + L+ S+ I Q ++ DP P+
Sbjct: 345 AIANIIATAVHREQQTRNM---------------NLLHHSINAIDQGVIITDPRQSKNPI 389
Query: 267 VYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+YA+ F ++GY+ +E++G+NC FL G T+ L ++ A+
Sbjct: 390 IYANQGFENISGYNASEILGKNCNFLRGEQTEKASLNKLRDAV 432
>gi|222481465|ref|YP_002567701.1| PAS/PAC sensor signal transduction histidine kinase [Halorubrum
lacusprofundi ATCC 49239]
gi|222454841|gb|ACM59104.1| PAS/PAC sensor signal transduction histidine kinase [Halorubrum
lacusprofundi ATCC 49239]
Length = 587
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 67/120 (55%), Gaps = 1/120 (0%)
Query: 18 LWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRR 77
L +A+D+ P T++DPS +P++ + GF ++G+ R E +GRN R QG T
Sbjct: 117 LLSEQAMDQAPIGITVSDPSQPDNPLIQVNDGFCTLTGYDREEFLGRNCRFLQGEATREE 176
Query: 78 TIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
T+ E+ AI + P+ V+L NY+KDG+ FW ++ + G ++F+ Q I + K
Sbjct: 177 TVAEMGAAIEAQEPVTVDLRNYRKDGSMFWNRV-TTIPIRDDSGTVSNFLGYQQNITNEK 235
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 32/52 (61%)
Query: 258 DPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
DP PD P++ +D F LTGYDR E +G+NCRFL G T + ++ AI
Sbjct: 134 DPSQPDNPLIQVNDGFCTLTGYDREEFLGRNCRFLQGEATREETVAEMGAAI 185
>gi|440744379|ref|ZP_20923682.1| PAS:GGDEF protein [Pseudomonas syringae BRIP39023]
gi|440373797|gb|ELQ10540.1| PAS:GGDEF protein [Pseudomonas syringae BRIP39023]
Length = 748
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 69/113 (61%), Gaps = 6/113 (5%)
Query: 29 DSFTITDPS---ISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+ + G IV+ + FL ++GF+ E+IGR R+ Q T+R T+ IREA
Sbjct: 170 DAILITEAEPIDLPGPRIVYCNPAFLAITGFTEDEVIGRTPRILQCEDTSRATLDVIREA 229
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATHFVAVQVPIVSRK 137
+ RP+EV LLN +KDG+ FW+ ++S+V E G TH+V+VQ I RK
Sbjct: 230 LSHWRPVEVELLNTRKDGSQFWV--ELSIVPVANEKGWFTHWVSVQRDITERK 280
Score = 37.4 bits (85), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 261 LPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPY 312
LP +VY + AFL +TG+ +EV+G+ R L DT L + A+S +
Sbjct: 182 LPGPRIVYCNPAFLAITGFTEDEVIGRTPRILQCEDTSRATLDVIREALSHW 233
>gi|448653703|ref|ZP_21681301.1| HTR-like protein [Haloarcula californiae ATCC 33799]
gi|445767291|gb|EMA18398.1| HTR-like protein [Haloarcula californiae ATCC 33799]
Length = 837
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P TI D + +P+V+A+ F +++G+ I+G+N R QG T+ + E+
Sbjct: 264 AIDEAPVGITIADANRPDNPLVYANDKFSELTGYQEENIVGQNSRFLQGENTDPGPVAEM 323
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
REAI E P+ V L NY+KDGT FW ++ V G T+++ Q
Sbjct: 324 REAIDAEEPVTVELQNYRKDGTEFWNRVTIAPVTDGT-GEVTNYIGFQ 370
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ D + PD P+VYA+D F +LTGY +VGQN RFL G +TD + ++ AI
Sbjct: 272 ITIADANRPDNPLVYANDKFSELTGYQEENIVGQNSRFLQGENTDPGPVAEMREAI 327
>gi|347754168|ref|YP_004861732.1| PAS domain S-box protein [Candidatus Chloracidobacterium
thermophilum B]
gi|347586686|gb|AEP11216.1| PAS domain S-box [Candidatus Chloracidobacterium thermophilum B]
Length = 736
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 68/119 (57%), Gaps = 4/119 (3%)
Query: 24 LDELPDSFTITDPSISGHP---IVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
LD + D+ +T+ P I++ +R F +M+G++ E IG+ RM QGP T+
Sbjct: 219 LDNIHDAVLVTEAEPIDPPGPRILYVNRAFEQMTGYTALEAIGQTPRMLQGPETSAEARA 278
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
IR+A++ +PI + L+NY+KDG PFW + + E G TH+VAVQ + R+ +
Sbjct: 279 RIRQALQNWQPITIELINYRKDGHPFWSELAI-VPIADETGYYTHWVAVQRDVTERRRI 336
>gi|304393244|ref|ZP_07375172.1| sensory box histidine kinase [Ahrensia sp. R2A130]
gi|303294251|gb|EFL88623.1| sensory box histidine kinase [Ahrensia sp. R2A130]
Length = 325
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 61/99 (61%), Gaps = 1/99 (1%)
Query: 32 TITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP 91
TI+DP++ P+VF +R F K +G+ + IG+N R QG T+ + IRE IR +R
Sbjct: 15 TISDPNLPDSPLVFVNRAFEKTTGYMASYAIGKNCRFLQGEGTSPEHVTLIREGIRHQRD 74
Query: 92 IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
+EV L NY+ +G FW +S +F +DG+ T+++ VQ
Sbjct: 75 VEVVLKNYRANGRSFWNQLSLSPIF-DDDGKLTYYIGVQ 112
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 28/40 (70%)
Query: 258 DPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDT 297
DP+LPD P+V+ + AF K TGY + +G+NCRFL G T
Sbjct: 18 DPNLPDSPLVFVNRAFEKTTGYMASYAIGKNCRFLQGEGT 57
>gi|448331268|ref|ZP_21520534.1| HTR-like protein [Natrinema versiforme JCM 10478]
gi|445609551|gb|ELY63349.1| HTR-like protein [Natrinema versiforme JCM 10478]
Length = 717
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 66/115 (57%), Gaps = 1/115 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++E P +T+P +PI++A+ F ++G+ + E++GRN R QG +T + E+
Sbjct: 273 AMNEAPVGIILTNPHAEDNPIIYANDEFTDLTGYEKDEVLGRNCRFLQGEQTREEPVAEL 332
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
R A+ + + V L NY+ DGT FW +++ +F ++G +FV Q + +K
Sbjct: 333 RNAVEKRESVTVELRNYRADGTEFWNRVRIAPLF-DDNGDIEYFVGFQDDVTGKK 386
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 14/125 (11%)
Query: 202 RKAATAIDNILSVLTHYSQLT--GRLVCGKRCSLPGMGFISSSLYI---SLGRIKQSFVL 256
RK +T ID L H T G L+C +L + + L + ++ +L
Sbjct: 230 RKDSTRID-----LEHTLSFTDDGSLIC-TLSNLTTDESVETELSMRERAMNEAPVGIIL 283
Query: 257 IDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYPKKK 316
+PH D P++YA+D F LTGY+++EV+G+NCRFL G T + ++ A+ K++
Sbjct: 284 TNPHAEDNPIIYANDEFTDLTGYEKDEVLGRNCRFLQGEQTREEPVAELRNAVE---KRE 340
Query: 317 SIYME 321
S+ +E
Sbjct: 341 SVTVE 345
>gi|433774135|ref|YP_007304602.1| PAS domain S-box [Mesorhizobium australicum WSM2073]
gi|433666150|gb|AGB45226.1| PAS domain S-box [Mesorhizobium australicum WSM2073]
Length = 367
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 66/118 (55%), Gaps = 3/118 (2%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
ITD + +PIV A+R FL ++GF+ E++GRN R QG T+ + EIR AI +R
Sbjct: 57 IVITDARQADNPIVLANRAFLDLTGFTSDEVLGRNCRFLQGEGTSPTAVAEIRAAIERQR 116
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSE 148
V +LN++KDG+PFW +S + E G +F A Q+ + KH + SE
Sbjct: 117 EANVEILNFRKDGSPFWNQLHLSPIKDDEGGLLYYF-ASQIDVT--KHRMIQSLEASE 171
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 249 RIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIA 308
R + V+ D D P+V A+ AFL LTG+ +EV+G+NCRFL G T T + ++ A
Sbjct: 52 RTRMPIVITDARQADNPIVLANRAFLDLTGFTSDEVLGRNCRFLQGEGTSPTAVAEIRAA 111
Query: 309 I 309
I
Sbjct: 112 I 112
>gi|315126040|ref|YP_004068043.1| sensor protein [Pseudoalteromonas sp. SM9913]
gi|315014554|gb|ADT67892.1| putative sensor protein [Pseudoalteromonas sp. SM9913]
Length = 1101
Score = 84.7 bits (208), Expect = 6e-14, Method: Composition-based stats.
Identities = 42/116 (36%), Positives = 68/116 (58%), Gaps = 1/116 (0%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+A++ +I D S+ G P+VF + F K++G+S+ E++G N + QGP T++ I
Sbjct: 436 QAIESCNVGISIADASVQGFPLVFLNSEFEKITGYSKEEMLGINCSLLQGPNTDKNAIDI 495
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
I AI+ + + +LNYKKDGT FW ++S VF E + T +V +Q I +K
Sbjct: 496 ITNAIKTLKTQRIEILNYKKDGTEFWNSLQISPVF-NEQQQLTAYVGIQQDITEQK 550
Score = 42.4 bits (98), Expect = 0.27, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 256 LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYPKK 315
+ D + P+V+ + F K+TGY + E++G NC L G +TD + ++ AI +
Sbjct: 447 IADASVQGFPLVFLNSEFEKITGYSKEEMLGINCSLLQGPNTDKNAIDIITNAIKTLKTQ 506
Query: 316 KSIYMEY 322
+ + Y
Sbjct: 507 RIEILNY 513
>gi|409101099|ref|ZP_11221123.1| PAS/PAC sensor signal transduction histidine kinase [Pedobacter
agri PB92]
Length = 517
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 77/135 (57%), Gaps = 2/135 (1%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
ALD ITD + +PI++ ++ F K+SG++R ++IGRN R QG +++ +I
Sbjct: 25 ALDSSISGIIITDNTQFDNPIIYCNKAFEKLSGYTRDKVIGRNCRFLQGTERDQQAREDI 84
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R+A+ E I V L NY+K+G FW +S + DG+ +HF+ VQ I RK+ +
Sbjct: 85 RKAVNEGHSITVELRNYRKNGELFWNELFISPI-SIHDGKVSHFIGVQNDITRRKNAEEN 143
Query: 143 GMSYSEDGGGSRLRE 157
++Y + +++E
Sbjct: 144 -LAYEREQVELKIQE 157
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 35/57 (61%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
++ D D P++Y + AF KL+GY R++V+G+NCRFL G + D + A++
Sbjct: 33 IIITDNTQFDNPIIYCNKAFEKLSGYTRDKVIGRNCRFLQGTERDQQAREDIRKAVN 89
>gi|300115509|ref|YP_003762084.1| putative PAS/PAC sensor protein [Nitrosococcus watsonii C-113]
gi|299541446|gb|ADJ29763.1| putative PAS/PAC sensor protein [Nitrosococcus watsonii C-113]
Length = 150
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 70/115 (60%), Gaps = 1/115 (0%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+ LD + ++TDP +P+V+ + F K++G+ + EI+G+N R+ QG ++
Sbjct: 21 QILDSCVNGVSLTDPDQEDNPLVYVNEAFEKITGYKKDEILGKNCRILQGNDKDQEGARR 80
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+REAI+++ PIEV+L NYKKDG F+ ++ +F +E G +F+ +Q + +
Sbjct: 81 VREAIQKQVPIEVDLKNYKKDGELFYNHLAINPIFDQE-GHLIYFLGIQYDVTKQ 134
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 39/74 (52%)
Query: 237 GFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296
G I L L L DP D P+VY ++AF K+TGY ++E++G+NCR L G D
Sbjct: 13 GLIPRVLSQILDSCVNGVSLTDPDQEDNPLVYVNEAFEKITGYKKDEILGKNCRILQGND 72
Query: 297 TDTTVLYQVSIAIS 310
D +V AI
Sbjct: 73 KDQEGARRVREAIQ 86
>gi|197311343|gb|ACH61904.1| putative blue light receptor protein [bacterium enrichment culture
clone pWThLOV]
Length = 1204
Score = 84.3 bits (207), Expect = 6e-14, Method: Composition-based stats.
Identities = 43/118 (36%), Positives = 67/118 (56%), Gaps = 2/118 (1%)
Query: 20 VHEALD-ELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRT 78
+H A++ E T+ D HP+V+ + F +++G+ R E++GRN R QGP T++
Sbjct: 432 MHRAIEGEASLPITVVDVLAPDHPVVYVNPAFERLTGYGRDEVLGRNCRFLQGPETDQPA 491
Query: 79 IMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+ ++REA+R R V L NY+KDG+ F ++ V GR THF+ VQ I R
Sbjct: 492 LGQVREALRHGRSTTVVLHNYRKDGSRFINELHIAPVHDSH-GRVTHFIGVQTDITER 548
Score = 61.2 bits (147), Expect = 6e-07, Method: Composition-based stats.
Identities = 29/62 (46%), Positives = 39/62 (62%)
Query: 248 GRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSI 307
G ++D PD P+VY + AF +LTGY R+EV+G+NCRFL G +TD L QV
Sbjct: 438 GEASLPITVVDVLAPDHPVVYVNPAFERLTGYGRDEVLGRNCRFLQGPETDQPALGQVRE 497
Query: 308 AI 309
A+
Sbjct: 498 AL 499
>gi|433422511|ref|ZP_20406014.1| PAS-PAC-PAC sensing histidine kinase [Haloferax sp. BAB2207]
gi|432198601|gb|ELK54866.1| PAS-PAC-PAC sensing histidine kinase [Haloferax sp. BAB2207]
Length = 709
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
TIT+ P+ + + F +M+G+ +E+IGRN R QG T+ + + EA+
Sbjct: 8 ITITEAD-DDQPLTYVNDAFEEMTGYDSSEVIGRNCRFLQGDDTDPEAVETLHEAVDAGE 66
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
V L NY+KDGTPFW K+S V+ +DG THFV Q R +RN
Sbjct: 67 SAAVGLTNYRKDGTPFWNDLKISPVY--DDGELTHFVGFQTDATVRHALRN 115
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%)
Query: 263 DMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
D P+ Y +DAF ++TGYD +EV+G+NCRFL G DTD + + A+
Sbjct: 16 DQPLTYVNDAFEEMTGYDSSEVIGRNCRFLQGDDTDPEAVETLHEAV 62
>gi|424875649|ref|ZP_18299311.1| PAS domain S-box [Rhizobium leguminosarum bv. viciae WSM1455]
gi|393171350|gb|EJC71397.1| PAS domain S-box [Rhizobium leguminosarum bv. viciae WSM1455]
Length = 345
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 60/101 (59%), Gaps = 1/101 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
+TD PIV A++ FL+++G++ E++GRN R QGP T+ + EIR AI ER
Sbjct: 40 MVVTDGRKPDLPIVLANKAFLELTGYAAQEVLGRNCRFLQGPATSPIAVAEIRAAIAGER 99
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+ V +LNYKK G FW +S V G +DG+ +F Q+
Sbjct: 100 EVSVEILNYKKSGEQFWNRLHLSPVHG-DDGKILYFFGSQI 139
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 41/66 (62%)
Query: 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQ 304
I+ R + V+ D PD+P+V A+ AFL+LTGY EV+G+NCRFL G T + +
Sbjct: 31 IAFERTRMPMVVTDGRKPDLPIVLANKAFLELTGYAAQEVLGRNCRFLQGPATSPIAVAE 90
Query: 305 VSIAIS 310
+ AI+
Sbjct: 91 IRAAIA 96
>gi|193214461|ref|YP_001995660.1| PAS/PAC sensor protein [Chloroherpeton thalassium ATCC 35110]
gi|193087938|gb|ACF13213.1| putative PAS/PAC sensor protein [Chloroherpeton thalassium ATCC
35110]
Length = 190
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 67/118 (56%), Gaps = 1/118 (0%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+A+D+ + I+D +P++F + GF +++G++ EI+G+N R QGP TN+
Sbjct: 13 KAIDKTSEGIAISDARQPDNPLIFVNNGFTEITGYNSEEILGKNCRFLQGPETNKEASQM 72
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
IRE++ + V L N+KK+G FW ++ + E+G THFV +Q I K +
Sbjct: 73 IRESLGTGKHCVVELRNHKKNGEAFWNRLSLNPI-RDENGEITHFVGIQSDITESKKL 129
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 239 ISSSLYI-SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDT 297
I SL I ++ + + + D PD P+++ ++ F ++TGY+ E++G+NCRFL G +T
Sbjct: 6 IDKSLLIKAIDKTSEGIAISDARQPDNPLIFVNNGFTEITGYNSEEILGKNCRFLQGPET 65
Query: 298 D 298
+
Sbjct: 66 N 66
>gi|399057126|ref|ZP_10743793.1| PAS domain S-box [Novosphingobium sp. AP12]
gi|398042358|gb|EJL35389.1| PAS domain S-box [Novosphingobium sp. AP12]
Length = 873
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
ITDP +P+VFA+ F +++G+ R+EI+GRN R QG T+ +TI I +A+ I
Sbjct: 50 ITDPRQPDNPVVFANESFCRLTGYERSEILGRNCRFLQGAETDPQTIRRIHDAVERVEAI 109
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
E+++ N++KDG+ FW M+ V+ G+ +F A QV +
Sbjct: 110 EIDIRNHRKDGSAFWNRLLMAPVYDAY-GKHAYFFASQVDV 149
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 43/59 (72%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ ++ DP PD P+V+A+++F +LTGY+R+E++G+NCRFL G +TD + ++ A+
Sbjct: 45 RMPMIITDPRQPDNPVVFANESFCRLTGYERSEILGRNCRFLQGAETDPQTIRRIHDAV 103
>gi|443309980|ref|ZP_21039653.1| PAS domain S-box [Synechocystis sp. PCC 7509]
gi|442779979|gb|ELR90199.1| PAS domain S-box [Synechocystis sp. PCC 7509]
Length = 546
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 70/114 (61%), Gaps = 4/114 (3%)
Query: 29 DSFTITDPSISGHP---IVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ ITD HP IV+ ++ F KM+G+S +++G+ R+ QG +T++ + +IR A
Sbjct: 192 DAILITDAEPIEHPGPQIVYVNQAFTKMTGYSLEDVLGKTPRLLQGSKTDQDALDKIRVA 251
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
++ +P+ V L+NY KDG+ FW+ ++ V + G TH+V+VQ I RK +
Sbjct: 252 LKAWQPVRVELINYCKDGSEFWVELSITPV-TDQKGWYTHWVSVQRDITERKQI 304
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 262 PDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYPKKKSIYME 321
P +VY + AF K+TGY +V+G+ R L G TD L ++ +A+ + + +
Sbjct: 205 PGPQIVYVNQAFTKMTGYSLEDVLGKTPRLLQGSKTDQDALDKIRVALKAWQPVRVELIN 264
Query: 322 YVR 324
Y +
Sbjct: 265 YCK 267
>gi|422671422|ref|ZP_16730788.1| PAS:GGDEF protein, partial [Pseudomonas syringae pv. aceris str.
M302273]
gi|330969162|gb|EGH69228.1| PAS:GGDEF protein, partial [Pseudomonas syringae pv. aceris str.
M302273]
Length = 628
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 69/114 (60%), Gaps = 6/114 (5%)
Query: 29 DSFTITDPS---ISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+ + G IV+ + FL ++GF+ E+IGR R+ Q T+R T+ IREA
Sbjct: 50 DAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEDTSRATLDIIREA 109
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATHFVAVQVPIVSRKH 138
+ RP+EV LLN +KDG+ FW+ ++S+V E G TH+V+VQ I RK
Sbjct: 110 LSHWRPVEVELLNTRKDGSQFWV--ELSIVPVANEKGWFTHWVSVQRDITERKE 161
>gi|381182903|ref|ZP_09891681.1| blue-light photoreceptor [Listeriaceae bacterium TTU M1-001]
gi|380317210|gb|EIA20551.1| blue-light photoreceptor [Listeriaceae bacterium TTU M1-001]
Length = 259
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 56/88 (63%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+++AL P I DP+I G P VF + F K++G+S+ EIIG+NG QGP TN ++
Sbjct: 11 MYKALRLSPSPVIIADPTIEGTPFVFVNHSFEKLTGYSKDEIIGKNGSFLQGPDTNVESL 70
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFW 107
+I +AIR E+ I L NYKK+G F+
Sbjct: 71 KQISDAIRNEKSITQILKNYKKNGESFY 98
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 239 ISSSLYISLGRIKQSFVLI-DPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDT 297
IS+++ R+ S V+I DP + P V+ + +F KLTGY ++E++G+N FL G DT
Sbjct: 6 ISANIMYKALRLSPSPVIIADPTIEGTPFVFVNHSFEKLTGYSKDEIIGKNGSFLQGPDT 65
Query: 298 DTTVLYQVSIAI 309
+ L Q+S AI
Sbjct: 66 NVESLKQISDAI 77
>gi|452206471|ref|YP_007486593.1| sensor box histidine kinase [Natronomonas moolapensis 8.8.11]
gi|452082571|emb|CCQ35831.1| sensor box histidine kinase [Natronomonas moolapensis 8.8.11]
Length = 583
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+D+ P T+ D ++ P+++ + GF ++G+ R E++G+N R QG T + ++
Sbjct: 122 AIDQAPVGVTVADVTLDDEPLIYVNDGFGDITGYPRDEVLGQNCRFLQGDGTRDEPVAKM 181
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK-HMR 140
R AI E+ + V L NY+KDGT FW +S V DG TH++ Q I K H R
Sbjct: 182 RAAIDAEQSVTVELRNYRKDGTEFWNRITLSPV-ENSDGTVTHYLGFQQNISEMKTHQR 239
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 28/40 (70%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG 294
+ D L D P++Y +D F +TGY R+EV+GQNCRFL G
Sbjct: 131 TVADVTLDDEPLIYVNDGFGDITGYPRDEVLGQNCRFLQG 170
>gi|158853255|dbj|BAF91489.1| aureochrome2 [Vaucheria frigida]
gi|158853259|dbj|BAF91491.1| aureochrome2 [Vaucheria frigida]
Length = 343
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 73/133 (54%), Gaps = 7/133 (5%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + +AL SF +T+P + PIVFAS F+K++G+SR +++GRN R QGP T
Sbjct: 210 RSDFTLMKALYSSQPSFCVTNPLVPDCPIVFASDSFIKITGYSREQVLGRNCRFLQGPDT 269
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFW-MLFKMSLVFGKEDGRATHFVA----V 129
+ + +R+ I E + +V +LNY G PFW +F +L G+ +FV V
Sbjct: 270 DPDAVRILRKGIVEGKDTDVTILNYNASGEPFWNHVFIAAL--RDSSGQVINFVGIQHVV 327
Query: 130 QVPIVSRKHMRNS 142
Q P++ R N+
Sbjct: 328 QRPVIDRGQGENN 340
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 43/57 (75%)
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+L +L + SF + +P +PD P+V+ASD+F+K+TGY R +V+G+NCRFL G DTD
Sbjct: 214 TLMKALYSSQPSFCVTNPLVPDCPIVFASDSFIKITGYSREQVLGRNCRFLQGPDTD 270
>gi|304321705|ref|YP_003855348.1| sensory box histidine kinase [Parvularcula bermudensis HTCC2503]
gi|303300607|gb|ADM10206.1| sensory box histidine kinase [Parvularcula bermudensis HTCC2503]
Length = 361
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 75/136 (55%), Gaps = 9/136 (6%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A + P +F +T+P + +PIV+ +R F ++G++ +GRN R QGP T++ + ++
Sbjct: 33 AFERFPIAFVLTNPGLEDNPIVYVNRAFENLTGYAAEVSLGRNCRFLQGPDTDKEAVKKM 92
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
RE ++ P+E LLNY+ DG PF ++ +F + G+ + F+ +Q R S
Sbjct: 93 REHLQRAAPVETVLLNYRSDGKPFRNYLRIEPIF-DDSGQLSCFLGLQ--------QRVS 143
Query: 143 GMSYSEDGGGSRLREI 158
+ S D +L+EI
Sbjct: 144 DATTSPDAISVQLKEI 159
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%)
Query: 249 RIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIA 308
R +FVL +P L D P+VY + AF LTGY +G+NCRFL G DTD + ++
Sbjct: 36 RFPIAFVLTNPGLEDNPIVYVNRAFENLTGYAAEVSLGRNCRFLQGPDTDKEAVKKMREH 95
Query: 309 ISPYPKKKSIYMEY 322
+ +++ + Y
Sbjct: 96 LQRAAPVETVLLNY 109
>gi|334117359|ref|ZP_08491451.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(s) [Microcoleus vaginatus FGP-2]
gi|333462179|gb|EGK90784.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(s) [Microcoleus vaginatus FGP-2]
Length = 1375
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++ + ITD +++ +PI++ + F +++G+ R E++G+N R QG T+ ++
Sbjct: 348 AIESCSNGIAITDATVADNPIIYVNPSFERITGYRRDELMGKNCRFLQGTDTHTPAAKQL 407
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
R AI E R +V L N++KDGTPFW ++ V+ THF+ VQ I R+
Sbjct: 408 RVAIEEGRESQVILRNFRKDGTPFWHELSIAPVYNSRR-HLTHFIGVQTDITDRQ 461
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 37/56 (66%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ D + D P++Y + +F ++TGY R+E++G+NCRFL G DT T Q+ +AI
Sbjct: 356 IAITDATVADNPIIYVNPSFERITGYRRDELMGKNCRFLQGTDTHTPAAKQLRVAI 411
>gi|213968309|ref|ZP_03396453.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
pv. tomato T1]
gi|213926947|gb|EEB60498.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
pv. tomato T1]
Length = 763
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 69/113 (61%), Gaps = 6/113 (5%)
Query: 29 DSFTITDPS---ISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+ + G IV+ + FL ++GF+ E+IGR R+ Q T+R T+ IREA
Sbjct: 185 DAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEDTSRETLDVIREA 244
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATHFVAVQVPIVSRK 137
+ RP+EV L+N +KDG+ FW+ ++S+V E G TH+V+VQ I RK
Sbjct: 245 LTHWRPVEVELINTRKDGSQFWV--ELSIVPVANEKGWFTHWVSVQRDITERK 295
>gi|28868556|ref|NP_791175.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
syringae pv. tomato str. DC3000]
gi|28851794|gb|AAO54870.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
pv. tomato str. DC3000]
Length = 763
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 69/113 (61%), Gaps = 6/113 (5%)
Query: 29 DSFTITDPS---ISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+ + G IV+ + FL ++GF+ E+IGR R+ Q T+R T+ IREA
Sbjct: 185 DAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEDTSRETLDVIREA 244
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATHFVAVQVPIVSRK 137
+ RP+EV L+N +KDG+ FW+ ++S+V E G TH+V+VQ I RK
Sbjct: 245 LTHWRPVEVELINTRKDGSQFWV--ELSIVPVANEKGWFTHWVSVQRDITERK 295
>gi|448460377|ref|ZP_21597202.1| histidine kinase [Halorubrum lipolyticum DSM 21995]
gi|445807118|gb|EMA57204.1| histidine kinase [Halorubrum lipolyticum DSM 21995]
Length = 494
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 65/115 (56%), Gaps = 2/115 (1%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P T+ +P +P+ + + F +++G+ E++G++ R QG TN T I
Sbjct: 162 AMDEAPVGITLAEPGTENNPLTYLNEEFERLTGYG-PEMLGKDCRFLQGAETNTETTAAI 220
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
REAI +ERP+ V++LNY+ + FW ++ + G EDG +V Q I RK
Sbjct: 221 REAIDDERPVSVDVLNYRANDQKFWNRLTVAPIRG-EDGSVIRYVGFQTNITERK 274
Score = 44.3 bits (103), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
L +P + P+ Y ++ F +LTGY E++G++CRFL G +T+T + AI
Sbjct: 170 ITLAEPGTENNPLTYLNEEFERLTGYG-PEMLGKDCRFLQGAETNTETTAAIREAI 224
>gi|302060301|ref|ZP_07251842.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
pv. tomato K40]
Length = 711
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 69/113 (61%), Gaps = 6/113 (5%)
Query: 29 DSFTITDPS---ISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+ + G IV+ + FL ++GF+ E+IGR R+ Q T+R T+ IREA
Sbjct: 133 DAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEDTSRETLDVIREA 192
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATHFVAVQVPIVSRK 137
+ RP+EV L+N +KDG+ FW+ ++S+V E G TH+V+VQ I RK
Sbjct: 193 LTHWRPVEVELINTRKDGSQFWV--ELSIVPVANEKGWFTHWVSVQRDITERK 243
>gi|302129938|ref|ZP_07255928.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
pv. tomato NCPPB 1108]
Length = 674
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 69/113 (61%), Gaps = 6/113 (5%)
Query: 29 DSFTITDPS---ISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+ + G IV+ + FL ++GF+ E+IGR R+ Q T+R T+ IREA
Sbjct: 96 DAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEDTSRETLDVIREA 155
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATHFVAVQVPIVSRK 137
+ RP+EV L+N +KDG+ FW+ ++S+V E G TH+V+VQ I RK
Sbjct: 156 LTHWRPVEVELINTRKDGSQFWV--ELSIVPVANEKGWFTHWVSVQRDITERK 206
>gi|422656625|ref|ZP_16719070.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
pv. lachrymans str. M302278]
gi|331015153|gb|EGH95209.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
pv. lachrymans str. M302278]
Length = 674
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 69/113 (61%), Gaps = 6/113 (5%)
Query: 29 DSFTITDPS---ISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+ + G IV+ + FL ++GF+ E+IGR R+ Q T+R T+ IREA
Sbjct: 96 DAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEDTSRETLDVIREA 155
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATHFVAVQVPIVSRK 137
+ RP+EV L+N +KDG+ FW+ ++S+V E G TH+V+VQ I RK
Sbjct: 156 LTHWRPVEVELINTRKDGSQFWV--ELSIVPVANEKGWFTHWVSVQRDITERK 206
>gi|301383442|ref|ZP_07231860.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
pv. tomato Max13]
Length = 674
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 69/113 (61%), Gaps = 6/113 (5%)
Query: 29 DSFTITDPS---ISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+ + G IV+ + FL ++GF+ E+IGR R+ Q T+R T+ IREA
Sbjct: 96 DAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEDTSRETLDVIREA 155
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATHFVAVQVPIVSRK 137
+ RP+EV L+N +KDG+ FW+ ++S+V E G TH+V+VQ I RK
Sbjct: 156 LTHWRPVEVELINTRKDGSQFWV--ELSIVPVANEKGWFTHWVSVQRDITERK 206
>gi|452208293|ref|YP_007488415.1| receiver/sensor box protein [Natronomonas moolapensis 8.8.11]
gi|452084393|emb|CCQ37735.1| receiver/sensor box protein [Natronomonas moolapensis 8.8.11]
Length = 652
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 67/121 (55%), Gaps = 3/121 (2%)
Query: 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
+A+D+ T+ DPS + P+V+ + F +M+G+ +GRN R QG T+ T+
Sbjct: 265 QQAIDDADVPITLADPSEADRPLVYVNEAFEEMTGYPPERTLGRNCRFLQGEDTDPETVA 324
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK-HM 139
IR+AI +E I V L NY+KDGT FW ++ ++ +DG ++ Q + +K H
Sbjct: 325 AIRDAIDDEESISVELRNYRKDGTEFWNRLTVTPIY--DDGELVRYLGTQRDVTEQKTHE 382
Query: 140 R 140
R
Sbjct: 383 R 383
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYP 313
L DP D P+VY ++AF ++TGY +G+NCRFL G DTD + + AI
Sbjct: 275 ITLADPSEADRPLVYVNEAFEEMTGYPPERTLGRNCRFLQGEDTDPETVAAIRDAID--- 331
Query: 314 KKKSIYME 321
++SI +E
Sbjct: 332 DEESISVE 339
>gi|302879861|ref|YP_003848425.1| PAS/PAC sensor-containing diguanylate cyclase [Gallionella
capsiferriformans ES-2]
gi|302582650|gb|ADL56661.1| diguanylate cyclase with PAS/PAC sensor [Gallionella
capsiferriformans ES-2]
Length = 312
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 72/127 (56%), Gaps = 5/127 (3%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+A+D+L D TI D P+++ + GF K+SG+S AE+IG+ R QG T++ I
Sbjct: 14 QAVDQLHDGITIADARQQDWPLIYVNAGFEKLSGYSAAELIGKPVRFLQGTDTDQAEIAV 73
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR----K 137
+RE++ V L NY++DGT FW +S + K G THFV +Q + +R +
Sbjct: 74 LRESLLTGVSCLVTLRNYRRDGTLFWNELSISPIRDKT-GELTHFVGIQKDVTARVIQEQ 132
Query: 138 HMRNSGM 144
++R S +
Sbjct: 133 NLRQSNL 139
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 238 FISSSLYI-SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296
ISS L ++ ++ + D D P++Y + F KL+GY E++G+ RFL G D
Sbjct: 6 LISSDLLAQAVDQLHDGITIADARQQDWPLIYVNAGFEKLSGYSAAELIGKPVRFLQGTD 65
Query: 297 TDTTVLYQVSIAI 309
TD Q IA+
Sbjct: 66 TD-----QAEIAV 73
>gi|116255520|ref|YP_771353.1| hypothetical protein pRL110320 [Rhizobium leguminosarum bv. viciae
3841]
gi|115260168|emb|CAK03271.1| putative regulator [Rhizobium leguminosarum bv. viciae 3841]
Length = 345
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 59/101 (58%), Gaps = 1/101 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
+TD PIV A++ FL+++G+ E++GRN R QGP T+ + EIR AI ER
Sbjct: 40 MVVTDGRKPDLPIVLANKAFLELTGYPAQEVLGRNCRFLQGPATSPIAVAEIRAAIAGER 99
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+ V +LNYKK G FW +S V G +DG+ +F Q+
Sbjct: 100 EVSVEILNYKKSGEQFWNRLHLSPVHG-DDGKILYFFGSQI 139
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 41/66 (62%)
Query: 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQ 304
I+ R + V+ D PD+P+V A+ AFL+LTGY EV+G+NCRFL G T + +
Sbjct: 31 IAFERTRMPMVVTDGRKPDLPIVLANKAFLELTGYPAQEVLGRNCRFLQGPATSPIAVAE 90
Query: 305 VSIAIS 310
+ AI+
Sbjct: 91 IRAAIA 96
>gi|395492431|ref|ZP_10424010.1| multi-sensor hybrid histidine kinase [Sphingomonas sp. PAMC 26617]
Length = 849
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 62/101 (61%), Gaps = 1/101 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
IT+P + +PIVF + F +++G++R EI+GRN R QG T+ T+ +R A P+
Sbjct: 35 ITNPRLPDNPIVFTNNAFCRLTGYTREEILGRNCRFLQGADTDPATVARLRAACERVEPL 94
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
E+++LNY+K+G FW M+ V+ E G ++ A QV +
Sbjct: 95 EIDILNYRKNGDTFWNRLLMAPVYDTE-GVLAYYFASQVDV 134
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 40/58 (68%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIA 308
+ ++ +P LPD P+V+ ++AF +LTGY R E++G+NCRFL G DTD + ++ A
Sbjct: 30 RMPMIITNPRLPDNPIVFTNNAFCRLTGYTREEILGRNCRFLQGADTDPATVARLRAA 87
>gi|119952737|ref|YP_950384.1| sensory box protein [Arthrobacter aurescens TC1]
gi|119951867|gb|ABM10776.1| Sensory Box Protein [Arthrobacter aurescens TC1]
Length = 727
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 82/140 (58%), Gaps = 7/140 (5%)
Query: 5 LGLIEQSFNNRYTL---WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEI 61
LG++E++ ++ + + +ALD + D ITD +G +V+A++ F ++G+S AE+
Sbjct: 26 LGMLERAKPHKALVSAELLGQALDTVSDGSLITD---AGQNVVYANKAFESVTGYSTAEM 82
Query: 62 IGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDG 121
+GRN R+ QGP ++ TI +R + +LNY+K+GTPFW +S G
Sbjct: 83 LGRNCRVLQGPGSDPETIAMMRTVLGRGETFRCEILNYRKNGTPFWNGLTVS-PLRDAAG 141
Query: 122 RATHFVAVQVPIVSRKHMRN 141
THFV+VQ + +++ M++
Sbjct: 142 VITHFVSVQRDVTAQRTMQD 161
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 266 MVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+VYA+ AF +TGY E++G+NCR L G +D
Sbjct: 64 VVYANKAFESVTGYSTAEMLGRNCRVLQGPGSD 96
>gi|428225933|ref|YP_007110030.1| PAS/PAC and GAF sensor-containing diguanylate
cyclase/phosphodiesterase [Geitlerinema sp. PCC 7407]
gi|427985834|gb|AFY66978.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(s) [Geitlerinema sp. PCC 7407]
Length = 1135
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 65/109 (59%), Gaps = 1/109 (0%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88
+ +TDP+ +P+++ + F ++G+S +++G+N R QGP ++ + E+R AIRE
Sbjct: 437 NGIVVTDPTQPDNPVIYVNPAFEGITGYSGEDVLGKNCRFLQGPDRDQAGVEELRRAIRE 496
Query: 89 ERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+R V L N +KDG FW ++ VF ++ G THFV +Q I RK
Sbjct: 497 QRECHVVLHNTRKDGVDFWNELFVAPVFDRQ-GYLTHFVGIQNDITERK 544
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 15/103 (14%)
Query: 207 AIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPM 266
AI N+L+ Q RL +R I++S V+ DP PD P+
Sbjct: 407 AIANVLATAIDRKQADSRLHLMERV-------IAAS--------SNGIVVTDPTQPDNPV 451
Query: 267 VYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+Y + AF +TGY +V+G+NCRFL G D D + ++ AI
Sbjct: 452 IYVNPAFEGITGYSGEDVLGKNCRFLQGPDRDQAGVEELRRAI 494
>gi|344343465|ref|ZP_08774333.1| PAS sensor protein [Marichromatium purpuratum 984]
gi|343804888|gb|EGV22786.1| PAS sensor protein [Marichromatium purpuratum 984]
Length = 152
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 77/136 (56%), Gaps = 6/136 (4%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+ LD + T++DP +PIV+A+ F ++G+SR EI+G N R QG ++ + +
Sbjct: 18 QILDTCVNGITLSDPDQDDNPIVYANAAFELITGYSREEILGHNCRFLQGEDHDQEGVAQ 77
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR----- 136
IREA+ +P+ V L NY+KDG+ F+ F + +F +E G+ +++ +Q + ++
Sbjct: 78 IREAMAGNQPVTVTLRNYRKDGSRFYNRFTIRPLFDRE-GQLIYYLGIQHDVTNQVEAEA 136
Query: 137 KHMRNSGMSYSEDGGG 152
+ R S + D GG
Sbjct: 137 EVARLSALLAKADAGG 152
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 35/55 (63%)
Query: 256 LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
L DP D P+VYA+ AF +TGY R E++G NCRFL G D D + Q+ A++
Sbjct: 29 LSDPDQDDNPIVYANAAFELITGYSREEILGHNCRFLQGEDHDQEGVAQIREAMA 83
>gi|332186175|ref|ZP_08387921.1| sensory box protein [Sphingomonas sp. S17]
gi|332013990|gb|EGI56049.1| sensory box protein [Sphingomonas sp. S17]
Length = 524
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 63/110 (57%), Gaps = 1/110 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP +PIVF + F M+G+S EI+G N R QGP T+R + +IR A+ I
Sbjct: 33 VTDPRQPDNPIVFCNEAFSFMTGYSEDEILGTNCRFLQGPETDRDVVAQIRAAVERRDEI 92
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
V LLNY+K+G+ FW +S V+ + G +F + Q+ I R+ ++
Sbjct: 93 AVELLNYRKNGSTFWNALFVSPVY-DDAGELVYFFSSQLDISRRREAEDA 141
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 43/70 (61%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S + ++ + ++ DP PD P+V+ ++AF +TGY +E++G NCRFL G +TD
Sbjct: 17 SDIFFAAVKTTRMPMIVTDPRQPDNPIVFCNEAFSFMTGYSEDEILGTNCRFLQGPETDR 76
Query: 300 TVLYQVSIAI 309
V+ Q+ A+
Sbjct: 77 DVVAQIRAAV 86
>gi|188583707|ref|YP_001927152.1| signal transduction histidine kinase [Methylobacterium populi
BJ001]
gi|179347205|gb|ACB82617.1| signal transduction histidine kinase [Methylobacterium populi
BJ001]
Length = 366
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 65/128 (50%), Gaps = 2/128 (1%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A + P +TDP +P+V+A+ FL ++G+ R E+ G N RM QGP T+ + +
Sbjct: 22 AFEASPTPMVVTDPRRGDNPVVWANGAFLALTGYGREELYGHNCRMLQGPLTDEAVLQRM 81
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R A+ RP E LLNY+KDGT FW ++ V E G F + Q + KH
Sbjct: 82 RVALAAGRPFEGELLNYRKDGTTFWNGMTINPVR-DEAGEVVFFFSAQADMTD-KHRLEV 139
Query: 143 GMSYSEDG 150
M + D
Sbjct: 140 AMRDANDA 147
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 37/57 (64%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
V+ DP D P+V+A+ AFL LTGY R E+ G NCR L G TD VL ++ +A++
Sbjct: 30 MVVTDPRRGDNPVVWANGAFLALTGYGREELYGHNCRMLQGPLTDEAVLQRMRVALA 86
>gi|448689107|ref|ZP_21694844.1| HTR-like protein [Haloarcula japonica DSM 6131]
gi|445778977|gb|EMA29919.1| HTR-like protein [Haloarcula japonica DSM 6131]
Length = 726
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P TITDP +P+++A+ + ++G+S +E++G+N R+ QG T+ + +
Sbjct: 276 AIDEAPVGVTITDPDQPDNPLIYANDHYRDLTGYSLSELLGKNCRILQGENTDPAPVTRM 335
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
R+AI E + V L NY+KDGT FW ++ V +DG ++V Q I
Sbjct: 336 RDAIDAEERVTVELRNYRKDGTEFWNRVHIAPVR-DDDGAVVNYVGFQQDIT 386
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 36/55 (65%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ DP PD P++YA+D + LTGY +E++G+NCR L G +TD + ++ AI
Sbjct: 285 TITDPDQPDNPLIYANDHYRDLTGYSLSELLGKNCRILQGENTDPAPVTRMRDAI 339
>gi|331228939|ref|XP_003327136.1| hypothetical protein PGTG_08913 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309306126|gb|EFP82717.1| hypothetical protein PGTG_08913 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 856
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 62/110 (56%), Gaps = 1/110 (0%)
Query: 25 DELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIRE 84
D L D F +T+P + HPIV S GF K++G+ R I+G+N R QGP T+ ++ IR+
Sbjct: 436 DGLGDCFCLTNPRLRDHPIVLVSDGFTKVTGYERQAIVGKNCRFLQGPGTSPESVQRIRD 495
Query: 85 AIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
+ LLNY+KDGTPF+ L + + F G +F+ Q+ +
Sbjct: 496 GLNSGEGCTELLLNYRKDGTPFYCLLCI-IPFRDVTGALIYFIGGQINVT 544
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 30/44 (68%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDT 297
F L +P L D P+V SD F K+TGY+R +VG+NCRFL G T
Sbjct: 442 FCLTNPRLRDHPIVLVSDGFTKVTGYERQAIVGKNCRFLQGPGT 485
>gi|448299045|ref|ZP_21489058.1| bacterio-opsin activator [Natronorubrum tibetense GA33]
gi|445588579|gb|ELY42821.1| bacterio-opsin activator [Natronorubrum tibetense GA33]
Length = 646
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 68/116 (58%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++E P TI+DP + +P+V+ + + +M+G+ ++IGRN R QG ++ + E+
Sbjct: 144 AINEAPVGITISDPDLEDNPLVYVNDAYEEMTGYDYDDVIGRNCRFLQGEDSSEAAVAEM 203
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
AI E+ P+ V + NY+KDGT FW ++ V E G TH++ Q I +RK
Sbjct: 204 AAAIDEDYPVTVEIKNYRKDGTEFWNEVTIAPVR-DEAGTVTHYIGFQNDITARKE 258
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 10/82 (12%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL----------Y 303
+ DP L D P+VY +DA+ ++TGYD ++V+G+NCRFL G D+ + Y
Sbjct: 152 ITISDPDLEDNPLVYVNDAYEEMTGYDYDDVIGRNCRFLQGEDSSEAAVAEMAAAIDEDY 211
Query: 304 QVSIAISPYPKKKSIYMEYVRV 325
V++ I Y K + + V +
Sbjct: 212 PVTVEIKNYRKDGTEFWNEVTI 233
>gi|448301844|ref|ZP_21491834.1| HTR-like protein [Natronorubrum tibetense GA33]
gi|445583468|gb|ELY37799.1| HTR-like protein [Natronorubrum tibetense GA33]
Length = 563
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++E P +T+P +PI++ + F ++G+ + E++GRN R QG +T + ++
Sbjct: 106 AMNEAPVGIILTNPHAEDNPIIYVNDKFTDLTGYEKDEVLGRNCRFLQGEQTREEPVDKL 165
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
R A+ P+ V L NY+ DGT FW +++ +F ++G +FV Q + +K
Sbjct: 166 RTAVENREPVTVELRNYRADGTKFWNHVRIAPLF-DDNGDIEYFVGFQNDVTKKK 219
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 32/44 (72%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDT 297
+L +PH D P++Y +D F LTGY+++EV+G+NCRFL G T
Sbjct: 114 IILTNPHAEDNPIIYVNDKFTDLTGYEKDEVLGRNCRFLQGEQT 157
>gi|452207021|ref|YP_007487143.1| sensor box histidine kinase [Natronomonas moolapensis 8.8.11]
gi|452083121|emb|CCQ36406.1| sensor box histidine kinase [Natronomonas moolapensis 8.8.11]
Length = 723
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 62/116 (53%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+D TI D P+V+ + F ++G+ AE +GRN R QG T++RT+ +
Sbjct: 263 AMDGANVGITIADADEPDLPLVYINDSFEAITGYGPAESLGRNCRFLQGEGTDQRTVDRV 322
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
R A+ E P+ V +LNY+ DG PFW K+ V DG THF+ Q I R+
Sbjct: 323 RAALEAEEPVSVEILNYRADGEPFWNDLKIVPVTDG-DGEVTHFLGFQDDITERRQ 377
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
+ D PD+P+VY +D+F +TGY E +G+NCRFL G TD + +V A+
Sbjct: 271 ITIADADEPDLPLVYINDSFEAITGYGPAESLGRNCRFLQGEGTDQRTVDRVRAALE 327
>gi|440798424|gb|ELR19492.1| SAM domain (Sterile alpha motif) domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 488
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 67/104 (64%), Gaps = 2/104 (1%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88
+S +TD + PIV+A+ F +M+ + + +IIGRN R QG T+ T+ +IR A++
Sbjct: 57 ESILVTDNELPDCPIVWANDQFERMTLYPKEDIIGRNCRFLQGNYTDPATVGKIRAAVKG 116
Query: 89 ERPIEVNLLNYKKDGTPFWMLFKMSLVF--GKEDGRATHFVAVQ 130
++V +LNY++DGT FW F++ V GK++G +HF+A+Q
Sbjct: 117 GESLDVEILNYRRDGTAFWNRFRILPVHKKGKKEGPVSHFIAIQ 160
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%)
Query: 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLY 303
Y L + +S ++ D LPD P+V+A+D F ++T Y + +++G+NCRFL G TD +
Sbjct: 49 YPYLTNVFESILVTDNELPDCPIVWANDQFERMTLYPKEDIIGRNCRFLQGNYTDPATVG 108
Query: 304 QVSIAIS 310
++ A+
Sbjct: 109 KIRAAVK 115
>gi|429191743|ref|YP_007177421.1| PAS domain-containing protein [Natronobacterium gregoryi SP2]
gi|448325113|ref|ZP_21514511.1| PAS/PAC sensor protein [Natronobacterium gregoryi SP2]
gi|429135961|gb|AFZ72972.1| PAS domain S-box [Natronobacterium gregoryi SP2]
gi|445616252|gb|ELY69880.1| PAS/PAC sensor protein [Natronobacterium gregoryi SP2]
Length = 1517
Score = 83.2 bits (204), Expect = 2e-13, Method: Composition-based stats.
Identities = 43/114 (37%), Positives = 62/114 (54%), Gaps = 1/114 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ P TITDP PIV+A+ F +M+G++ +E GRN R QG T+ + E+R
Sbjct: 304 LEAAPIGITITDPRHPDDPIVYANDAFEEMTGYAESECRGRNCRFLQGRETDSEAVRELR 363
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
EAI P V L NY+KDG+ FW ++ + + G +FV Q + RK
Sbjct: 364 EAIAAAEPTTVELRNYRKDGSEFWNRVSVAPI-EDDQGAVVNFVEFQEDVTERK 416
Score = 59.7 bits (143), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/55 (47%), Positives = 39/55 (70%)
Query: 256 LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
+ DP PD P+VYA+DAF ++TGY +E G+NCRFL G +TD+ + ++ AI+
Sbjct: 313 ITDPRHPDDPIVYANDAFEEMTGYAESECRGRNCRFLQGRETDSEAVRELREAIA 367
>gi|75910072|ref|YP_324368.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
[Anabaena variabilis ATCC 29413]
gi|75703797|gb|ABA23473.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Anabaena variabilis ATCC 29413]
Length = 1021
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 68/111 (61%), Gaps = 1/111 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL + + +TD + +PI++ ++ F M+G+S E+IG+N R Q T++ ++
Sbjct: 204 MEQALAAISNGIVLTDANQPDNPIIYVNQAFEAMTGYSAGEVIGQNCRFLQANETDQLSL 263
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
E+R A++E++ V + N++KDGT FW ++ VF G+ THF+ VQ
Sbjct: 264 SELRSALQEKKECHVVIKNFRKDGTEFWNELYIAPVFDS-CGQLTHFIGVQ 313
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
+L I VL D + PD P++Y + AF +TGY EV+GQNCRFL +TD L ++
Sbjct: 207 ALAAISNGIVLTDANQPDNPIIYVNQAFEAMTGYSAGEVIGQNCRFLQANETDQLSLSEL 266
Query: 306 SIAI 309
A+
Sbjct: 267 RSAL 270
>gi|116753699|ref|YP_842817.1| multi-sensor hybrid histidine kinase [Methanosaeta thermophila PT]
gi|116665150|gb|ABK14177.1| multi-sensor hybrid histidine kinase [Methanosaeta thermophila PT]
Length = 1692
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 62/105 (59%), Gaps = 5/105 (4%)
Query: 35 DPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94
DPS I++ + F +M+G++R E++GR +GP T+R IMEI EA+R +P+
Sbjct: 850 DPSDGMPKIIYVNSAFTRMTGYAREEVLGRYPDFLEGPETDRSKIMEILEAVRNAQPVNQ 909
Query: 95 NLLNYKKDGTPFWMLFKMSLVFGKED--GRATHFVAVQVPIVSRK 137
L+NY+KDG+ FW+ +F D G TH+V++Q R+
Sbjct: 910 ELVNYRKDGSRFWVELN---IFPVRDHMGEVTHWVSIQRDTTERR 951
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 209 DNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPD-MP-M 266
D +S+L + G V K+ S+ M + S++ S + V+ P D MP +
Sbjct: 804 DAEISILVASASTIGEAVA-KKDSIERMRLLESAVVNS----NDAIVIAAPDPSDGMPKI 858
Query: 267 VYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+Y + AF ++TGY R EV+G+ FL G +TD + + ++ A+
Sbjct: 859 IYVNSAFTRMTGYAREEVLGRYPDFLEGPETDRSKIMEILEAV 901
>gi|427732263|ref|YP_007078500.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
protein [Nostoc sp. PCC 7524]
gi|427368182|gb|AFY50903.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
protein [Nostoc sp. PCC 7524]
Length = 1019
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 70/118 (59%), Gaps = 3/118 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL + +TD + +PI++ + F ++G+ E+IGRN R QG ++ I E+
Sbjct: 207 ALAASSNGIVLTDATQPDNPIIYVNPAFESITGYFVQEVIGRNCRFLQGNAQDQLGIEEL 266
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140
R+A++E+R V L NY+KDGTPFW ++ VF + GR T+F+ VQ I +H++
Sbjct: 267 RKALQEQRECHVILKNYRKDGTPFWNELYIAPVF-DDSGRLTNFIGVQNDIT--QHLQ 321
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+L VL D PD P++Y + AF +TGY EV+G+NCRFL G D
Sbjct: 207 ALAASSNGIVLTDATQPDNPIIYVNPAFESITGYFVQEVIGRNCRFLQGNAQD 259
>gi|75907252|ref|YP_321548.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC
29413]
gi|75700977|gb|ABA20653.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC
29413]
Length = 1820
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 88/173 (50%), Gaps = 18/173 (10%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL + I+D + +P+++ + F +++G+ EI+GRN R QG T + I E+
Sbjct: 446 ALAASSNGIVISDAKLPNYPVIYVNSAFEQITGYKATEIVGRNCRFLQGNDTTQPAIEEL 505
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH---- 138
R A++ + +V L NY+KDG+ FW +S ++ ++G+ +HF+ +Q I R+
Sbjct: 506 RSALKAGKNCKVILRNYRKDGSLFWNQLSVSPIYN-DNGQLSHFIGIQTDISDRQQAEAS 564
Query: 139 MRNSGMSYSE--DG------GGSRL-----REIVFGSCRREVCSDSLLDLDRV 178
+R +++ DG G L E +FG + +C S+ L +V
Sbjct: 565 LRRQALTFENIYDGVIITNLQGQILDWNPAAERMFGYSKDHICGQSISILHKV 617
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
+L V+ D LP+ P++Y + AF ++TGY E+VG+NCRFL G DT + ++
Sbjct: 446 ALAASSNGIVISDAKLPNYPVIYVNSAFEQITGYKATEIVGRNCRFLQGNDTTQPAIEEL 505
Query: 306 SIAISPYPKKKSIYMEY 322
A+ K I Y
Sbjct: 506 RSALKAGKNCKVILRNY 522
>gi|91790035|ref|YP_550987.1| multi-sensor signal transduction histidine kinase [Polaromonas sp.
JS666]
gi|91699260|gb|ABE46089.1| multi-sensor signal transduction histidine kinase [Polaromonas sp.
JS666]
Length = 1562
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 68/121 (56%), Gaps = 4/121 (3%)
Query: 20 VHEALDELPDSFTITDPSISGHP---IVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNR 76
+ ++ L D IT+ G P IVF + F++ +G+SR E++G+ R+ QGP+T R
Sbjct: 765 LESSISRLNDMVVITEAVPLGEPGPRIVFVNDAFVRRTGYSREEVLGKTPRILQGPQTQR 824
Query: 77 RTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+ I A+R +P++ L+NY K G PFW+ + V + G TH+VAV+ I R
Sbjct: 825 AELDRIGAALRAWQPVQAELVNYTKSGEPFWLDLDIVPVADSQGG-FTHWVAVERDITQR 883
Query: 137 K 137
K
Sbjct: 884 K 884
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%)
Query: 262 PDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYPKKKSIYME 321
P +V+ +DAF++ TGY R EV+G+ R L G T L ++ A+ + ++ +
Sbjct: 787 PGPRIVFVNDAFVRRTGYSREEVLGKTPRILQGPQTQRAELDRIGAALRAWQPVQAELVN 846
Query: 322 YVR 324
Y +
Sbjct: 847 YTK 849
>gi|393767962|ref|ZP_10356505.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. GXF4]
gi|392726568|gb|EIZ83890.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. GXF4]
Length = 807
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 77/139 (55%), Gaps = 2/139 (1%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP++ +PIVFA+R F ++ G+ ++IGRN R QGP T+ + ++R+AI R +
Sbjct: 60 VTDPNLPDNPIVFANRAFQELCGYGAEDLIGRNCRFLQGPGTDPSDVAKVRDAIAARRDV 119
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSEDGGG 152
V +LNY +DGTPF +S VF G+ +F A Q+ V+R ++ SE
Sbjct: 120 VVEILNYHRDGTPFRNELYVSPVF-DPSGQLRYFFASQLD-VTRFRTEEERLAESEARYQ 177
Query: 153 SRLREIVFGSCRREVCSDS 171
+ I G C E+ D+
Sbjct: 178 TLFEAIDAGFCVAEMRFDA 196
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 227 CGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVG 286
G+R S G+ L+ + + + ++ DP+LPD P+V+A+ AF +L GY +++G
Sbjct: 35 AGQRTSAAGVDL----LFTAAEKTRMPQIVTDPNLPDNPIVFANRAFQELCGYGAEDLIG 90
Query: 287 QNCRFLNGVDTDTTVLYQVSIAIS 310
+NCRFL G TD + + +V AI+
Sbjct: 91 RNCRFLQGPGTDPSDVAKVRDAIA 114
>gi|302186038|ref|ZP_07262711.1| PAS:GGDEF [Pseudomonas syringae pv. syringae 642]
Length = 748
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 69/113 (61%), Gaps = 6/113 (5%)
Query: 29 DSFTITDPS---ISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+ + G IV+ + FL ++GF+ E+IGR R+ Q T+R T+ IREA
Sbjct: 170 DAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEDTSRATLDVIREA 229
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATHFVAVQVPIVSRK 137
+ + R +EV LLN +KDG+ FW+ ++S+V E G TH+V+VQ I RK
Sbjct: 230 LSQWRAVEVELLNTRKDGSKFWV--ELSIVPVANEKGWFTHWVSVQRDITERK 280
Score = 37.4 bits (85), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 261 LPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPY 312
LP +VY + AFL +TG+ EV+G+ R L DT L + A+S +
Sbjct: 182 LPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEDTSRATLDVIREALSQW 233
>gi|292490507|ref|YP_003525946.1| PAS sensor protein [Nitrosococcus halophilus Nc4]
gi|291579102|gb|ADE13559.1| PAS sensor protein [Nitrosococcus halophilus Nc4]
Length = 149
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 68/115 (59%), Gaps = 1/115 (0%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+ LD + ++TDP +P+V+ + F K++G+ + EI+G+N R QG ++ +
Sbjct: 18 QILDSCVNGVSLTDPDQEDNPLVYVNEAFEKITGYKKEEILGKNCRFLQGNDRDQEEVKR 77
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+REAI+ PIEV++ NYKK+G F+ ++ VF +DG +F+ +Q + +
Sbjct: 78 LREAIQNRVPIEVDIRNYKKNGELFYNHLAVNPVFD-QDGNLLYFLGIQYDVTKQ 131
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 36/55 (65%)
Query: 256 LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
L DP D P+VY ++AF K+TGY + E++G+NCRFL G D D + ++ AI
Sbjct: 29 LTDPDQEDNPLVYVNEAFEKITGYKKEEILGKNCRFLQGNDRDQEEVKRLREAIQ 83
>gi|448488189|ref|ZP_21607119.1| PAS fold domain-containing protein [Halorubrum californiensis DSM
19288]
gi|445696451|gb|ELZ48540.1| PAS fold domain-containing protein [Halorubrum californiensis DSM
19288]
Length = 183
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 65/110 (59%), Gaps = 1/110 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
ALD+LP T+T P+ PIV+ +R F + +G++ E+ GRN R+FQGP + ++
Sbjct: 61 ALDDLPLGLTLTGPAYRDTPIVYVNRWFREWTGYALDELRGRNPRLFQGPDADADARADV 120
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVP 132
REA+ + V N ++DGTPF + +FG + G TH++AVQ P
Sbjct: 121 REALSTWSRVAVEFRNRRRDGTPFANRVSLRPLFG-DAGTVTHWIAVQEP 169
>gi|428770095|ref|YP_007161885.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
[Cyanobacterium aponinum PCC 10605]
gi|428684374|gb|AFZ53841.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Cyanobacterium aponinum PCC 10605]
Length = 596
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 68/117 (58%), Gaps = 3/117 (2%)
Query: 23 ALDELPDSFTITDPSIS--GHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
A+ DS ITD + G IVF ++ F KM+G+ +EIIG+ R+ QGP T+R
Sbjct: 45 AVHSAHDSIVITDTQLDYPGPRIVFVNKAFTKMTGYQESEIIGKTPRILQGPNTDRTIFR 104
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
E++ +R+ + +NY+KDGT F+ + + ++ E G+ TH++A+Q + +K
Sbjct: 105 ELKNNLRKGKVFFGEAINYRKDGTEFYNQWHIEPIYNSE-GKLTHYLAIQRDVTEKK 160
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 253 SFVLIDPHL--PDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
S V+ D L P +V+ + AF K+TGY +E++G+ R L G +TD T+ ++
Sbjct: 52 SIVITDTQLDYPGPRIVFVNKAFTKMTGYQESEIIGKTPRILQGPNTDRTIFREL 106
>gi|422616286|ref|ZP_16684992.1| PAS:GGDEF protein [Pseudomonas syringae pv. japonica str. M301072]
gi|443645188|ref|ZP_21129038.1| Sensory box/diguanylate cyclase(GGDEF)/phosphodiesterase(EAL)
domain protein [Pseudomonas syringae pv. syringae B64]
gi|330895802|gb|EGH28091.1| PAS:GGDEF protein [Pseudomonas syringae pv. japonica str. M301072]
gi|443285205|gb|ELS44210.1| Sensory box/diguanylate cyclase(GGDEF)/phosphodiesterase(EAL)
domain protein [Pseudomonas syringae pv. syringae B64]
Length = 748
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 68/113 (60%), Gaps = 6/113 (5%)
Query: 29 DSFTITDPS---ISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+ + G IV+ + FL ++GF+ E+IGR R+ Q T+R T+ IREA
Sbjct: 170 DAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEETSRATLDVIREA 229
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATHFVAVQVPIVSRK 137
+ R +EV LLN +KDG+ FW+ ++S+V E G TH+V+VQ I RK
Sbjct: 230 LSHWRAVEVELLNTRKDGSKFWV--ELSIVPVANEKGWFTHWVSVQRDITERK 280
>gi|448333722|ref|ZP_21522911.1| bacterio-opsin activator [Natrinema pellirubrum DSM 15624]
gi|445621601|gb|ELY75072.1| bacterio-opsin activator [Natrinema pellirubrum DSM 15624]
Length = 657
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 69/117 (58%), Gaps = 1/117 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL+E P TI+DP + +P+V+ + + +M+G+ E++GRN R QG ++ I E+
Sbjct: 130 ALEEAPVGITISDPDMEDNPLVYVNEAYEEMTGYEYDEVVGRNCRFLQGEDSSEAAIAEM 189
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
A+ E+ P+ V L NY+KDGT FW ++ V EDG T++V Q + +RK
Sbjct: 190 AAAVAEDYPVTVELKNYRKDGTEFWNEVTIAPVR-DEDGTVTNYVGFQNDVTARKEA 245
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 10/82 (12%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL----------Y 303
+ DP + D P+VY ++A+ ++TGY+ +EVVG+NCRFL G D+ + Y
Sbjct: 138 ITISDPDMEDNPLVYVNEAYEEMTGYEYDEVVGRNCRFLQGEDSSEAAIAEMAAAVAEDY 197
Query: 304 QVSIAISPYPKKKSIYMEYVRV 325
V++ + Y K + + V +
Sbjct: 198 PVTVELKNYRKDGTEFWNEVTI 219
>gi|433592375|ref|YP_007281871.1| PAS domain S-box [Natrinema pellirubrum DSM 15624]
gi|433307155|gb|AGB32967.1| PAS domain S-box [Natrinema pellirubrum DSM 15624]
Length = 627
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 69/116 (59%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL+E P TI+DP + +P+V+ + + +M+G+ E++GRN R QG ++ I E+
Sbjct: 130 ALEEAPVGITISDPDMEDNPLVYVNEAYEEMTGYEYDEVVGRNCRFLQGEDSSEAAIAEM 189
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
A+ E+ P+ V L NY+KDGT FW ++ V EDG T++V Q + +RK
Sbjct: 190 AAAVAEDYPVTVELKNYRKDGTEFWNEVTIAPVR-DEDGTVTNYVGFQNDVTARKE 244
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 10/82 (12%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL----------Y 303
+ DP + D P+VY ++A+ ++TGY+ +EVVG+NCRFL G D+ + Y
Sbjct: 138 ITISDPDMEDNPLVYVNEAYEEMTGYEYDEVVGRNCRFLQGEDSSEAAIAEMAAAVAEDY 197
Query: 304 QVSIAISPYPKKKSIYMEYVRV 325
V++ + Y K + + V +
Sbjct: 198 PVTVELKNYRKDGTEFWNEVTI 219
>gi|440720227|ref|ZP_20900646.1| PAS:GGDEF protein [Pseudomonas syringae BRIP34876]
gi|440726355|ref|ZP_20906609.1| PAS:GGDEF protein [Pseudomonas syringae BRIP34881]
gi|440366263|gb|ELQ03347.1| PAS:GGDEF protein [Pseudomonas syringae BRIP34876]
gi|440366516|gb|ELQ03595.1| PAS:GGDEF protein [Pseudomonas syringae BRIP34881]
Length = 748
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 68/113 (60%), Gaps = 6/113 (5%)
Query: 29 DSFTITDPS---ISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+ + G IV+ + FL ++GF+ E+IGR R+ Q T+R T+ IREA
Sbjct: 170 DAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEETSRATLDVIREA 229
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATHFVAVQVPIVSRK 137
+ R +EV LLN +KDG+ FW+ ++S+V E G TH+V+VQ I RK
Sbjct: 230 LSHWRAVEVELLNTRKDGSKFWV--ELSIVPVANEKGWFTHWVSVQRDITERK 280
>gi|85374357|ref|YP_458419.1| hypothetical protein ELI_07650 [Erythrobacter litoralis HTCC2594]
gi|84787440|gb|ABC63622.1| sensory box histidine kinase [Erythrobacter litoralis HTCC2594]
Length = 362
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 1/120 (0%)
Query: 11 SFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQ 70
+F L +A+ + + +TDP HPIVF + F +++G+ +IIGRN R Q
Sbjct: 34 AFPGASGLLFEQAMAQTRMAVCLTDPHQPDHPIVFCNAAFERLTGYEEKDIIGRNCRFLQ 93
Query: 71 GPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
G RT+ + IR+A+ +E V LLNY+KDG+ FW + ++ E G+ +F Q
Sbjct: 94 GARTDESQVARIRDALAKEEVAVVELLNYRKDGSTFWNALHLGPIY-DESGKLKYFFRSQ 152
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 44/65 (67%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
++ + + + L DPH PD P+V+ + AF +LTGY+ +++G+NCRFL G TD + + ++
Sbjct: 46 AMAQTRMAVCLTDPHQPDHPIVFCNAAFERLTGYEEKDIIGRNCRFLQGARTDESQVARI 105
Query: 306 SIAIS 310
A++
Sbjct: 106 RDALA 110
>gi|289678106|ref|ZP_06498996.1| PAS:GGDEF [Pseudomonas syringae pv. syringae FF5]
Length = 748
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 68/113 (60%), Gaps = 6/113 (5%)
Query: 29 DSFTITDPS---ISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+ + G IV+ + FL ++GF+ E+IGR R+ Q T+R T+ IREA
Sbjct: 170 DAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEETSRATLDVIREA 229
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATHFVAVQVPIVSRK 137
+ R +EV LLN +KDG+ FW+ ++S+V E G TH+V+VQ I RK
Sbjct: 230 LSHWRAVEVELLNTRKDGSKFWV--ELSIVPVANEKGWFTHWVSVQRDITERK 280
>gi|422665381|ref|ZP_16725253.1| PAS:GGDEF protein [Pseudomonas syringae pv. aptata str. DSM 50252]
gi|330975799|gb|EGH75865.1| PAS:GGDEF protein [Pseudomonas syringae pv. aptata str. DSM 50252]
Length = 748
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 68/113 (60%), Gaps = 6/113 (5%)
Query: 29 DSFTITDPS---ISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+ + G IV+ + FL ++GF+ E+IGR R+ Q T+R T+ IREA
Sbjct: 170 DAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEETSRATLDVIREA 229
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATHFVAVQVPIVSRK 137
+ R +EV LLN +KDG+ FW+ ++S+V E G TH+V+VQ I RK
Sbjct: 230 LSHWRAVEVELLNTRKDGSKFWV--ELSIVPVANEKGWFTHWVSVQRDITERK 280
>gi|315498235|ref|YP_004087039.1| pas/pac sensor hybrid histidine kinase [Asticcacaulis excentricus
CB 48]
gi|315416247|gb|ADU12888.1| PAS/PAC sensor hybrid histidine kinase [Asticcacaulis excentricus
CB 48]
Length = 596
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 64/105 (60%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PIVFA++ FL +G++ E++GRN R QG T+ + I + AIR+ I
Sbjct: 117 VTDPNRPDNPIVFANQAFLNTTGYTMEEVMGRNCRFLQGEGTDPQMIANLSRAIRDRTDI 176
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
V + N++KDGT FW +S +F + DG+ ++ Q+ + R+
Sbjct: 177 AVEIQNFRKDGTAFWNALFVSPIFDR-DGKLLYYFGSQLDVTRRR 220
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 42/67 (62%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP+ PD P+V+A+ AFL TGY EV+G+NCRFL G TD ++
Sbjct: 104 FFAAIEMTRMPMIVTDPNRPDNPIVFANQAFLNTTGYTMEEVMGRNCRFLQGEGTDPQMI 163
Query: 303 YQVSIAI 309
+S AI
Sbjct: 164 ANLSRAI 170
>gi|422629843|ref|ZP_16695045.1| PAS:GGDEF protein [Pseudomonas syringae pv. pisi str. 1704B]
gi|330939046|gb|EGH42502.1| PAS:GGDEF protein [Pseudomonas syringae pv. pisi str. 1704B]
Length = 748
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 68/113 (60%), Gaps = 6/113 (5%)
Query: 29 DSFTITDPS---ISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+ + G IV+ + FL ++GF+ E+IGR R+ Q T+R T+ IREA
Sbjct: 170 DAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEETSRATLDVIREA 229
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATHFVAVQVPIVSRK 137
+ R +EV LLN +KDG+ FW+ ++S+V E G TH+V+VQ I RK
Sbjct: 230 LSHWRAVEVELLNTRKDGSKFWV--ELSIVPVANEKGWFTHWVSVQRDITERK 280
>gi|448384535|ref|ZP_21563373.1| bacterio-opsin activator [Haloterrigena thermotolerans DSM 11522]
gi|445658601|gb|ELZ11419.1| bacterio-opsin activator [Haloterrigena thermotolerans DSM 11522]
Length = 627
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 69/116 (59%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL+E P TI+DP + +P+V+ + + +M+G+ E++GRN R QG ++ I E+
Sbjct: 130 ALEEAPVGITISDPDMEDNPLVYVNEAYEEMTGYEYDEVVGRNCRFLQGEDSSEAAIAEM 189
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
A+ E+ P+ V L NY+KDGT FW ++ V EDG T++V Q + +RK
Sbjct: 190 AAAVAEDYPVTVELKNYRKDGTEFWNEVTIAPVR-DEDGAVTNYVGFQNDVTARKE 244
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 10/82 (12%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL----------Y 303
+ DP + D P+VY ++A+ ++TGY+ +EVVG+NCRFL G D+ + Y
Sbjct: 138 ITISDPDMEDNPLVYVNEAYEEMTGYEYDEVVGRNCRFLQGEDSSEAAIAEMAAAVAEDY 197
Query: 304 QVSIAISPYPKKKSIYMEYVRV 325
V++ + Y K + + V +
Sbjct: 198 PVTVELKNYRKDGTEFWNEVTI 219
>gi|424912642|ref|ZP_18336019.1| PAS domain S-box [Rhizobium leguminosarum bv. viciae USDA 2370]
gi|392848673|gb|EJB01196.1| PAS domain S-box [Rhizobium leguminosarum bv. viciae USDA 2370]
Length = 369
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 53/75 (70%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
ITDP +PI+F ++ F ++G+ E+IGRN R+ QGP+T+ + ++R+A+ ++ I
Sbjct: 41 ITDPRQPDNPIIFCNKAFCTLTGYEVGELIGRNCRLLQGPQTDPDAVTKLRDAVASQKDI 100
Query: 93 EVNLLNYKKDGTPFW 107
V++LNY+KDG+ FW
Sbjct: 101 AVDILNYRKDGSKFW 115
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 36/57 (63%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
++ DP PD P+++ + AF LTGY+ E++G+NCR L G TD + ++ A++
Sbjct: 39 MLITDPRQPDNPIIFCNKAFCTLTGYEVGELIGRNCRLLQGPQTDPDAVTKLRDAVA 95
>gi|448311400|ref|ZP_21501163.1| bacterio-opsin activator [Natronolimnobius innermongolicus JCM
12255]
gi|445605017|gb|ELY58953.1| bacterio-opsin activator [Natronolimnobius innermongolicus JCM
12255]
Length = 645
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 69/116 (59%), Gaps = 1/116 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
++E P TI+DP++ +P+V+ + + +++G+ E++GRN R QG ++ I E+
Sbjct: 145 INEAPVGITISDPALEDNPLVYINDAYQEITGYGYDEVVGRNCRFLQGEDSSEAAIAEMA 204
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
AI E+RP+ V L NY+KDGT FW ++ V E G TH+V Q + +RK
Sbjct: 205 AAIDEDRPVTVELKNYRKDGTEFWNEVTIAPVR-DETGTVTHYVGFQNDVTARKEA 259
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 32/44 (72%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDT 297
+ DP L D P+VY +DA+ ++TGY +EVVG+NCRFL G D+
Sbjct: 152 ITISDPALEDNPLVYINDAYQEITGYGYDEVVGRNCRFLQGEDS 195
>gi|389691690|ref|ZP_10180484.1| PAS domain S-box [Microvirga sp. WSM3557]
gi|388588673|gb|EIM28963.1| PAS domain S-box [Microvirga sp. WSM3557]
Length = 896
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 58/109 (53%), Gaps = 3/109 (2%)
Query: 34 TDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIE 93
TDP +PIV+ + F K++G+S E IGRN R Q PR + T+ IREAI R I
Sbjct: 19 TDPRAPDNPIVYVNDAFCKVTGYSPEEAIGRNCRFLQAPRVDDNTVTRIREAISAGRAIS 78
Query: 94 VNLLNYKKDGTPFW-MLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
LLN +KDGT FW LF + G D R F+A QV + R
Sbjct: 79 AELLNRRKDGTEFWNHLFITPISDGGSDPR--FFLATQVDVTQAYESRT 125
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
+ DP PD P+VY +DAF K+TGY E +G+NCRFL D + ++ AIS
Sbjct: 16 MIATDPRAPDNPIVYVNDAFCKVTGYSPEEAIGRNCRFLQAPRVDDNTVTRIREAIS 72
>gi|408785836|ref|ZP_11197577.1| sensory box histidine kinase [Rhizobium lupini HPC(L)]
gi|408488304|gb|EKJ96617.1| sensory box histidine kinase [Rhizobium lupini HPC(L)]
Length = 369
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 53/75 (70%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
ITDP +PI+F ++ F ++G+ E+IGRN R+ QGP+T+ + ++R+A+ ++ I
Sbjct: 41 ITDPRQPDNPIIFCNKAFCTLTGYEVGELIGRNCRLLQGPQTDPDAVTKLRDAVASQKDI 100
Query: 93 EVNLLNYKKDGTPFW 107
V++LNY+KDG+ FW
Sbjct: 101 AVDILNYRKDGSKFW 115
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 36/57 (63%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
++ DP PD P+++ + AF LTGY+ E++G+NCR L G TD + ++ A++
Sbjct: 39 MLITDPRQPDNPIIFCNKAFCTLTGYEVGELIGRNCRLLQGPQTDPDAVTKLRDAVA 95
>gi|300865640|ref|ZP_07110413.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
gi|300336367|emb|CBN55563.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
Length = 631
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 65/121 (53%), Gaps = 2/121 (1%)
Query: 18 LWVHE-ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNR 76
LW++ A+ I D + ++ + F KM+G+S EIIG N R+ QG T+
Sbjct: 205 LWLYSRAMAAASTGIVIADATTPNLANIYCNPAFAKMTGYSHEEIIGHNCRLLQGNDTDP 264
Query: 77 RTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
I +IREA+ + V L NY+KDGT FW +S V ++ G+ THF+ +Q+ +
Sbjct: 265 EAINQIREALHNQTECTVVLKNYRKDGTTFWNQLAISPVRDRK-GKLTHFIGIQMDVTKH 323
Query: 137 K 137
K
Sbjct: 324 K 324
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
V+ D P++ +Y + AF K+TGY E++G NCR L G DTD + Q+ A+
Sbjct: 219 IVIADATTPNLANIYCNPAFAKMTGYSHEEIIGHNCRLLQGNDTDPEAINQIREAL 274
>gi|218246869|ref|YP_002372240.1| response regulator receiver modulated diguanylate cyclase
[Cyanothece sp. PCC 8801]
gi|218167347|gb|ACK66084.1| response regulator receiver modulated diguanylate cyclase
[Cyanothece sp. PCC 8801]
Length = 481
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 80/152 (52%), Gaps = 6/152 (3%)
Query: 1 MDSQLGLIE--QSFNNRYTL---WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSG 55
+ QL L E Q F+ + + +H+A+ + ITD + S +PI++ + GF +M+G
Sbjct: 142 LQRQLDLTEAAQEFHGQPQIDAYLLHQAIKATYNGIIITDATQSDNPIIYVNPGFERMTG 201
Query: 56 FSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLV 115
+S E+ G+N R QG N+ I+ ++ ++E R + + NY+KDG+ FW +S V
Sbjct: 202 YSLEEVKGKNCRFLQGNDRNQPEILYMKTCLQEHRQCFITIRNYRKDGSMFWNEVSLSPV 261
Query: 116 FGKEDGRATHFVAVQVPIVSRKHMRNSGMSYS 147
E G+ +++ VQ + RK + Y
Sbjct: 262 -KDESGKLVYYIGVQTDVTVRKRVEEERQRYE 292
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 10/91 (10%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT-TV 301
L+ ++ ++ D D P++Y + F ++TGY EV G+NCRFL G D + +
Sbjct: 166 LHQAIKATYNGIIITDATQSDNPIIYVNPGFERMTGYSLEEVKGKNCRFLQGNDRNQPEI 225
Query: 302 LY---------QVSIAISPYPKKKSIYMEYV 323
LY Q I I Y K S++ V
Sbjct: 226 LYMKTCLQEHRQCFITIRNYRKDGSMFWNEV 256
>gi|108805704|ref|YP_645641.1| putative PAS/PAC sensor protein [Rubrobacter xylanophilus DSM 9941]
gi|108766947|gb|ABG05829.1| putative PAS/PAC sensor protein [Rubrobacter xylanophilus DSM 9941]
Length = 581
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 64/110 (58%), Gaps = 1/110 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
ITDP++ +PI++ + F +++G+SR E++GRN R Q + + +R+A+ E
Sbjct: 36 GIVITDPNLPDNPIIYVNPAFERITGYSRREVVGRNCRFLQREDRGQAELEVLRQAMAER 95
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
R V L NY++DG FW +S V+ EDGR +F+ VQ I RK M
Sbjct: 96 RDCRVVLRNYRRDGRMFWNELYVSPVY-DEDGRLVNFIGVQNDITERKRM 144
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPY 312
V+ DP+LPD P++Y + AF ++TGY R EVVG+NCRFL D L + A++
Sbjct: 36 GIVITDPNLPDNPIIYVNPAFERITGYSRREVVGRNCRFLQREDRGQAELEVLRQAMAER 95
Query: 313 PKKKSIYMEYVR 324
+ + Y R
Sbjct: 96 RDCRVVLRNYRR 107
>gi|254416779|ref|ZP_05030529.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196176519|gb|EDX71533.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 653
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 70/124 (56%), Gaps = 4/124 (3%)
Query: 29 DSFTITDPSISGHP---IVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+ P IV+ ++GF +M+G++ E+IG+ R QGP+T+R +IR+
Sbjct: 378 DAIVITEAHPIDKPGPRIVYVNQGFTRMTGYTSDEVIGKTPRFLQGPKTDRAQADKIRDT 437
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMS 145
+ P+ L+NY+KDG+ FW+ + V E+G TH++A++ I RK + +
Sbjct: 438 LCRWEPVRAELINYRKDGSEFWVELNIVPVVD-ENGDYTHWMAIERDISQRKQLETASAK 496
Query: 146 YSED 149
++
Sbjct: 497 RDQE 500
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 253 SFVLIDPHLPDMP---MVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+ V+ + H D P +VY + F ++TGY +EV+G+ RFL G TD
Sbjct: 379 AIVITEAHPIDKPGPRIVYVNQGFTRMTGYTSDEVIGKTPRFLQGPKTD 427
>gi|326389101|ref|ZP_08210683.1| LuxR family transcriptional regulator [Novosphingobium
nitrogenifigens DSM 19370]
gi|326206701|gb|EGD57536.1| LuxR family transcriptional regulator [Novosphingobium
nitrogenifigens DSM 19370]
Length = 196
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 1/118 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+ +++P + +PIV ++ F+ ++G+SR EIIGRN R GP T +R I
Sbjct: 13 AAVVSNPRLPDNPIVSCNQAFIDLTGYSRDEIIGRNCRFLCGPDTEVDLTERLRAGIAAR 72
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYS 147
P+ V +LNYKKDGTPF ++ +FG DG +F+ QV + H +N S S
Sbjct: 73 MPVMVEILNYKKDGTPFRNAVMIAPIFGA-DGELEYFLGSQVELSGGLHDQNRKRSES 129
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 40/58 (68%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
+ V+ +P LPD P+V + AF+ LTGY R+E++G+NCRFL G DT+ + ++ I+
Sbjct: 13 AAVVSNPRLPDNPIVSCNQAFIDLTGYSRDEIIGRNCRFLCGPDTEVDLTERLRAGIA 70
>gi|448472546|ref|ZP_21601170.1| bacterio-opsin activator [Halorubrum aidingense JCM 13560]
gi|445819850|gb|EMA69684.1| bacterio-opsin activator [Halorubrum aidingense JCM 13560]
Length = 667
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 1/118 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
V A+ + P +++DP + +P+V + + +G+ +GRN R QGP T+ T+
Sbjct: 142 VARAVSDAPIGISLSDPDLPDYPLVHVNDAWEDHTGYPVEAALGRNPRFLQGPGTDPMTV 201
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+ +AI+ E I V + NY++DGTPFW ++ V+ +DG H+V Q I RK
Sbjct: 202 ERLSKAIQREDQITVEIRNYRRDGTPFWNELTVAPVY-DDDGELAHYVGFQNDITERK 258
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%)
Query: 256 LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
L DP LPD P+V+ +DA+ TGY +G+N RFL G TD + ++S AI
Sbjct: 155 LSDPDLPDYPLVHVNDAWEDHTGYPVEAALGRNPRFLQGPGTDPMTVERLSKAI 208
>gi|448407165|ref|ZP_21573592.1| bacterio-opsin activator [Halosimplex carlsbadense 2-9-1]
gi|445676378|gb|ELZ28901.1| bacterio-opsin activator [Halosimplex carlsbadense 2-9-1]
Length = 652
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 1/148 (0%)
Query: 1 MDSQLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAE 60
+D+ + ++ F A+DE P TI D P+++ + F +++G+ A
Sbjct: 113 LDAAVAAGDRRFAEVTEQLKDRAMDEAPVGITIADGKRRDTPLIYVNDAFEQLAGYDEAN 172
Query: 61 IIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED 120
++GRN QG + I E+ AI E P+ V L+NY DG FW ++ + G ED
Sbjct: 173 VLGRNCNFMQGDESEEAKIAEMAAAIDEGDPVSVELVNYTDDGEQFWNRVHIAPIHG-ED 231
Query: 121 GRATHFVAVQVPIVSRKHMRNSGMSYSE 148
G TH+V Q + R +E
Sbjct: 232 GTVTHYVGFQEDVTDRVEAEREAQRQAE 259
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 32/47 (68%)
Query: 263 DMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
D P++Y +DAF +L GYD V+G+NC F+ G +++ + +++ AI
Sbjct: 152 DTPLIYVNDAFEQLAGYDEANVLGRNCNFMQGDESEEAKIAEMAAAI 198
>gi|399911275|ref|ZP_10779589.1| PAS/PAC and GAF sensor-containing diguanylate
cyclase/phosphodiesterase [Halomonas sp. KM-1]
Length = 1328
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88
+ I D G P+++ + F +++G+ R E++GR+ QG T+ + + +A+ E
Sbjct: 771 NGIVIADARAEGKPVIYVNEAFERITGYGRDEVLGRSCSFLQGSETDPEAVASMGKALAE 830
Query: 89 ERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
R I V L NY+KDGTPFW ++ V E G THFV +Q I RK
Sbjct: 831 RREINVTLCNYRKDGTPFWNNLYLAPVRDGE-GTVTHFVGIQHDISERK 878
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 36/57 (63%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
V+ D P++Y ++AF ++TGY R+EV+G++C FL G +TD + + A++
Sbjct: 773 IVIADARAEGKPVIYVNEAFERITGYGRDEVLGRSCSFLQGSETDPEAVASMGKALA 829
>gi|337280961|ref|YP_004620433.1| signal transduction protein [Ramlibacter tataouinensis TTB310]
gi|334732038|gb|AEG94414.1| signal transduction protein : sensor, PAS/PAC domains; regulator,
GGDEF/EAL domains-like protein [Ramlibacter
tataouinensis TTB310]
Length = 830
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 60/98 (61%), Gaps = 1/98 (1%)
Query: 40 GHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNY 99
G IVF + F +G+ R E++GR R+ QGP T R + +R+A+ E RP+ V+L+NY
Sbjct: 283 GPRIVFVNEAFETRTGYGRDEVLGRTPRLLQGPETQRDRLDRVRDALEEWRPVRVDLINY 342
Query: 100 KKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+K+G FW+ +S V+ K + TH+VAV + RK
Sbjct: 343 RKNGEAFWVDLDISPVWDKAR-KLTHWVAVGRDVTERK 379
>gi|299115347|emb|CBN74167.1| aureochrome 2 [Ectocarpus siliculosus]
Length = 441
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+AL SF +TDP + +PIV+AS F++++G+ RA+++GRN R QGP T+ + +
Sbjct: 273 KALQSSQPSFCVTDPQMPDNPIVYASDTFIELTGYDRAQVLGRNCRFLQGPDTDPDAVAK 332
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
IR+ I E V L YK DGT FW ++ + E + ++V +Q P+
Sbjct: 333 IRKGIEEGSDTSVYLRQYKADGTVFWNHVFVAALRNSEH-KIINYVGIQHPL 383
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 49/73 (67%), Gaps = 3/73 (4%)
Query: 237 GFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296
GF+ L +L + SF + DP +PD P+VYASD F++LTGYDR +V+G+NCRFL G D
Sbjct: 268 GFL---LVKALQSSQPSFCVTDPQMPDNPIVYASDTFIELTGYDRAQVLGRNCRFLQGPD 324
Query: 297 TDTTVLYQVSIAI 309
TD + ++ I
Sbjct: 325 TDPDAVAKIRKGI 337
>gi|367045084|ref|XP_003652922.1| hypothetical protein THITE_2034824, partial [Thielavia terrestris
NRRL 8126]
gi|347000184|gb|AEO66586.1| hypothetical protein THITE_2034824, partial [Thielavia terrestris
NRRL 8126]
Length = 757
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 63/106 (59%), Gaps = 4/106 (3%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L D+F ++DP + +PI+ AS G L MSGF R E++G+NGR+ QG T+ + +AI
Sbjct: 275 LGDAFCLSDPLLPDNPIIHASDGLLAMSGFRRKELVGKNGRVLQGVATDPDAARRLSQAI 334
Query: 87 REERPIEVNLLNYKKDGTPFW-MLFKMSLVFGKEDGRATHFVAVQV 131
+ +LNY+ DGTPFW +LF L+ E G +F+ QV
Sbjct: 335 ASGAEVTELILNYRPDGTPFWNLLFVCPLM---ERGSVRYFLGAQV 377
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTV 301
S Y LG +F L DP LPD P+++ASD L ++G+ R E+VG+N R L GV TD
Sbjct: 270 SPYHGLG---DAFCLSDPLLPDNPIIHASDGLLAMSGFRRKELVGKNGRVLQGVATDPDA 326
Query: 302 LYQVSIAIS 310
++S AI+
Sbjct: 327 ARRLSQAIA 335
>gi|289208470|ref|YP_003460536.1| PAS/PAC sensor protein [Thioalkalivibrio sp. K90mix]
gi|288944101|gb|ADC71800.1| putative PAS/PAC sensor protein [Thioalkalivibrio sp. K90mix]
Length = 147
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+D D I + + +++ +R F K++G+ EI+ R+ R QG T++ EI
Sbjct: 13 AVDASNDGVVIAEREGDDNILIYVNRAFEKLTGYRSEEILYRDCRFLQGDDTDQEARTEI 72
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
R AI+E RP V L NY+KDG+ FW ++ VF ED T+++ +Q I +R
Sbjct: 73 RAAIQENRPCRVTLRNYRKDGSLFWNELSLTPVFNDED-HLTYYIGIQKDITAR 125
Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISP 311
V+ + D ++Y + AF KLTGY E++ ++CRFL G DTD ++ AI
Sbjct: 22 VIAEREGDDNILIYVNRAFEKLTGYRSEEILYRDCRFLQGDDTDQEARTEIRAAIQE 78
>gi|448354656|ref|ZP_21543411.1| multi-sensor signal transduction histidine kinase [Natrialba
hulunbeirensis JCM 10989]
gi|445636987|gb|ELY90143.1| multi-sensor signal transduction histidine kinase [Natrialba
hulunbeirensis JCM 10989]
Length = 478
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 63/115 (54%), Gaps = 3/115 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P +TD S+ +PIV+A+ F ++G+ AE++G+N R+ QG RT + + +
Sbjct: 144 AMDEAPVGIVLTDSSLPDNPIVYANEKFYDLTGYPAAEVLGQNCRLLQGERTEQEPVDRM 203
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
R AI I + NY++DGT FW ++ + G E +FV Q RK
Sbjct: 204 RAAIEARESITAEVRNYRRDGTMFWNEVTIAPIDGSE---TPYFVGFQHETTRRK 255
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYP 313
VL D LPD P+VYA++ F LTGY EV+GQNCR L G T+ + ++ AI
Sbjct: 152 IVLTDSSLPDNPIVYANEKFYDLTGYPAAEVLGQNCRLLQGERTEQEPVDRMRAAIE--- 208
Query: 314 KKKSIYME 321
++SI E
Sbjct: 209 ARESITAE 216
>gi|325292827|ref|YP_004278691.1| sensory box histidine kinase [Agrobacterium sp. H13-3]
gi|325060680|gb|ADY64371.1| sensory box histidine kinase [Agrobacterium sp. H13-3]
Length = 369
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 65/99 (65%), Gaps = 1/99 (1%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
IT+P ++ +PI+F + F +++G+S E++G+N R+ QGP T+ ++ ++REAI E+ +
Sbjct: 41 ITNPLLNDNPIIFCNAAFSRLTGYSAEELVGQNCRLLQGPDTDPGSVTKLREAIAAEQDL 100
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+++LNY+KDG+ FW +S V G +F A Q+
Sbjct: 101 AIDILNYRKDGSEFWNALFVSPVRDAS-GTVIYFFASQL 138
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 37/57 (64%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
++ +P L D P+++ + AF +LTGY E+VGQNCR L G DTD + ++ AI+
Sbjct: 39 MIITNPLLNDNPIIFCNAAFSRLTGYSAEELVGQNCRLLQGPDTDPGSVTKLREAIA 95
>gi|159897746|ref|YP_001543993.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
aurantiacus DSM 785]
gi|159890785|gb|ABX03865.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
aurantiacus DSM 785]
Length = 1877
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88
D I DP P+V+ + F +++G++ EIIG+N R QG T+++ + E+R A+RE
Sbjct: 776 DGIVIVDPHQFDMPVVYVNPAFERITGYTPEEIIGKNCRFLQGDDTDQQGLRELRHAVRE 835
Query: 89 ERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+R V L NY+KDG+ FW ++ VF E+G +F+ VQ + R
Sbjct: 836 KRATRVLLRNYRKDGSLFWNELDINPVF-DENGELINFIGVQQDVSER 882
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 39/56 (69%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
V++DPH DMP+VY + AF ++TGY E++G+NCRFL G DTD L ++ A+
Sbjct: 778 IVIVDPHQFDMPVVYVNPAFERITGYTPEEIIGKNCRFLQGDDTDQQGLRELRHAV 833
>gi|428312412|ref|YP_007123389.1| PAS domain-containing protein [Microcoleus sp. PCC 7113]
gi|428254024|gb|AFZ19983.1| PAS domain S-box [Microcoleus sp. PCC 7113]
Length = 1204
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 64/110 (58%), Gaps = 1/110 (0%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88
+ ITD + S HP+V+A+ GF +++G+S E++G+N R QG + + E+R A+++
Sbjct: 578 NGIVITDATDSNHPLVYANPGFERITGYSVEEVMGQNCRFLQGTDREQPALTELRTALQQ 637
Query: 89 ERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
ER V L NY+KDG+ FW F +S V G TH++ V I K
Sbjct: 638 ERECRVVLRNYRKDGSLFWNEFSISPVRNSA-GILTHYIGVHRDITELKQ 686
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
V+ D + P+VYA+ F ++TGY EV+GQNCRFL G D + L ++ A+
Sbjct: 580 IVITDATDSNHPLVYANPGFERITGYSVEEVMGQNCRFLQGTDREQPALTELRTALQ 636
>gi|81300525|ref|YP_400733.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
[Synechococcus elongatus PCC 7942]
gi|81169406|gb|ABB57746.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Synechococcus elongatus PCC 7942]
Length = 1238
Score = 81.6 bits (200), Expect = 4e-13, Method: Composition-based stats.
Identities = 45/125 (36%), Positives = 67/125 (53%), Gaps = 2/125 (1%)
Query: 13 NNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGP 72
N + LW+ A++ +S I D PI++ + F K++GFS AE+IGRN R QG
Sbjct: 676 NEQLRLWL-RAIESTGNSIIIADAQQPDMPIIYVNPAFEKITGFSAAEVIGRNFRFLQGL 734
Query: 73 RTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVP 132
T + + E+R A+ E EV L +Y+KDG+ FW ++ V + G TH VA Q
Sbjct: 735 ETQQAELEEMRRALEEGTYCEVTLRSYRKDGSLFWNQISLAPV-RDQKGHLTHMVASQTD 793
Query: 133 IVSRK 137
+ K
Sbjct: 794 VSESK 798
Score = 54.3 bits (129), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 37/57 (64%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
S ++ D PDMP++Y + AF K+TG+ EV+G+N RFL G++T L ++ A+
Sbjct: 692 SIIIADAQQPDMPIIYVNPAFEKITGFSAAEVIGRNFRFLQGLETQQAELEEMRRAL 748
>gi|418408140|ref|ZP_12981456.1| sensory box histidine kinase [Agrobacterium tumefaciens 5A]
gi|358005054|gb|EHJ97380.1| sensory box histidine kinase [Agrobacterium tumefaciens 5A]
Length = 369
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 65/99 (65%), Gaps = 1/99 (1%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
IT+P ++ +PI+F + F +++G+S E++G+N R+ QGP T+ ++ ++REAI E+ +
Sbjct: 41 ITNPLLNDNPIIFCNAAFSRLTGYSAEELVGQNCRLLQGPDTDPGSVTKLREAIAAEQDL 100
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+++LNY+KDG+ FW +S V G +F A Q+
Sbjct: 101 AIDILNYRKDGSEFWNALFVSPVRDAA-GTVIYFFASQL 138
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 38/60 (63%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
+ ++ +P L D P+++ + AF +LTGY E+VGQNCR L G DTD + ++ AI+
Sbjct: 36 RMPMIITNPLLNDNPIIFCNAAFSRLTGYSAEELVGQNCRLLQGPDTDPGSVTKLREAIA 95
>gi|433462167|ref|ZP_20419757.1| blue-light photoreceptor [Halobacillus sp. BAB-2008]
gi|432189149|gb|ELK46278.1| blue-light photoreceptor [Halobacillus sp. BAB-2008]
Length = 268
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 66/120 (55%), Gaps = 1/120 (0%)
Query: 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRT 78
++ A+D + ITDP +P+++ ++GF +++G+ EI+G+N R QG T
Sbjct: 17 FIKAAIDRVGAGVVITDPEQEDNPMIYCNKGFQELTGYQPEEILGKNCRFLQGEETKPEK 76
Query: 79 IMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
I IR+ + P+ V L NY+KDG+ FW ++ V+ E T+FV VQ + R+
Sbjct: 77 IKLIRQGLANREPVLVELRNYRKDGSLFWNELQIFPVY-IEQMDQTYFVGVQKDVTKRRE 135
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDT 297
++ R+ V+ DP D PM+Y + F +LTGY E++G+NCRFL G +T
Sbjct: 21 AIDRVGAGVVITDPEQEDNPMIYCNKGFQELTGYQPEEILGKNCRFLQGEET 72
>gi|56752384|ref|YP_173085.1| hypothetical protein syc2375_d [Synechococcus elongatus PCC 6301]
gi|56687343|dbj|BAD80565.1| hypothetical protein [Synechococcus elongatus PCC 6301]
Length = 1238
Score = 81.6 bits (200), Expect = 4e-13, Method: Composition-based stats.
Identities = 45/125 (36%), Positives = 67/125 (53%), Gaps = 2/125 (1%)
Query: 13 NNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGP 72
N + LW+ A++ +S I D PI++ + F K++GFS AE+IGRN R QG
Sbjct: 676 NEQLRLWL-RAIESTGNSIIIADAQQPDMPIIYVNPAFEKITGFSAAEVIGRNFRFLQGL 734
Query: 73 RTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVP 132
T + + E+R A+ E EV L +Y+KDG+ FW ++ V + G TH VA Q
Sbjct: 735 ETQQAELEEMRRALEEGTYCEVTLRSYRKDGSLFWNQISLAPV-RDQKGHLTHMVASQTD 793
Query: 133 IVSRK 137
+ K
Sbjct: 794 VSESK 798
Score = 54.3 bits (129), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 37/57 (64%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
S ++ D PDMP++Y + AF K+TG+ EV+G+N RFL G++T L ++ A+
Sbjct: 692 SIIIADAQQPDMPIIYVNPAFEKITGFSAAEVIGRNFRFLQGLETQQAELEEMRRAL 748
>gi|434403453|ref|YP_007146338.1| PAS domain S-box [Cylindrospermum stagnale PCC 7417]
gi|428257708|gb|AFZ23658.1| PAS domain S-box [Cylindrospermum stagnale PCC 7417]
Length = 2260
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 70/124 (56%), Gaps = 5/124 (4%)
Query: 29 DSFTITDPSISGHP----IVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIRE 84
D+ IT+ I P I++ + F +MSG++ E++G+ R+ QG +T+R + +IR
Sbjct: 161 DAIIITEAVIPEEPFGLRILYVNAAFTRMSGYAVGEVMGKTPRILQGEQTSRTQLAKIRA 220
Query: 85 AIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGM 144
A++ PI L+NY K+G+ +W+ + + + G+ THFVAVQ I +RK +
Sbjct: 221 ALQAGLPIRTELINYHKNGSTYWVEINV-VPIKDQQGKITHFVAVQRDITARKQTEEALR 279
Query: 145 SYSE 148
S E
Sbjct: 280 SSEE 283
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 64/110 (58%), Gaps = 1/110 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
ITD +I P+++ + F +M+G++ AE+IG+N R+ QG ++ + +R A++ +
Sbjct: 1772 ITDVTIPDKPLIYVNSAFERMTGYTAAEVIGQNCRLLQGADISQPELTYLRAAVQSGKDC 1831
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
V L NY+KDG+ FW +S V+ DG TH++ +Q I RK +
Sbjct: 1832 TVILRNYRKDGSLFWNELNISPVYDT-DGELTHYIGIQTDITERKQAETA 1880
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/296 (22%), Positives = 111/296 (37%), Gaps = 81/296 (27%)
Query: 53 MSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER--------PIEVNLLNYKKDGT 104
M+G+ AEIIG+N F P EI +A+ +++ E + +KDG+
Sbjct: 1546 MTGYQAAEIIGQNFSCFFLPE-------EIAQALPKQQLELAAADGRCECESVFLRKDGS 1598
Query: 105 PFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCR 164
FW ++ + G+ F V I RK + S + + R
Sbjct: 1599 QFWANCILT-ALRDQTGKLRGFSKVTRDITERKLVEESLLRF-----------------R 1640
Query: 165 REVCSDSLLDLDRVLALDSDDTGLEIEDS---CEASDLEKRKAATAI----------DNI 211
+ + S S D + D G+ + + LE+ + A I I
Sbjct: 1641 KAIESSS----DAISMADITGEGIYVNPAFIELFQYTLEELQVAGGITVIFQKPQEHQKI 1696
Query: 212 LSVLTHYSQLTGRLVCGKRCSLPGMGFISS--------------SLYISLGRIKQS---- 253
L+ + G + RCS ++ S ++Y + + KQ+
Sbjct: 1697 LATIQRGESWRGEVTMQTRCSQILQIYLRSDAIKDATGKIVGKVNIYTDITQRKQAEESL 1756
Query: 254 -------------FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296
V+ D +PD P++Y + AF ++TGY EV+GQNCR L G D
Sbjct: 1757 RLRDRAIAASRHGIVITDVTIPDKPLIYVNSAFERMTGYTAAEVIGQNCRLLQGAD 1812
>gi|260778950|ref|ZP_05887842.1| sensor histidine kinase [Vibrio coralliilyticus ATCC BAA-450]
gi|260605114|gb|EEX31409.1| sensor histidine kinase [Vibrio coralliilyticus ATCC BAA-450]
Length = 622
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 68/113 (60%), Gaps = 6/113 (5%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN-GRMFQGPRTNRRTIMEIREAIR 87
D+ +TDP G+ + + GF++++G+ EI G+ G + QGP TN + + + EAI+
Sbjct: 136 DAIVVTDPE--GYT-TWVNEGFVQLTGYQLDEIKGKKPGDILQGPNTNIKQVQALSEAIK 192
Query: 88 EERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140
+ + I+ L+NY KDGT +W+ MS+V +DG T FVAV+ I RK +
Sbjct: 193 QAKQIDCELINYSKDGTEYWI--DMSIVPVFKDGTLTRFVAVERDITERKQLE 243
>gi|223997702|ref|XP_002288524.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220975632|gb|EED93960.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 96
Score = 81.6 bits (200), Expect = 4e-13, Method: Composition-based stats.
Identities = 39/85 (45%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
F ++DP + +PIVFAS GF K++G++R +++GRN R QG T+ + I IR AI
Sbjct: 1 FVLSDPRLPDNPIVFASPGFYKLTGYTRDQVLGRNCRFLQGTGTDPKAIDVIRTAIANGT 60
Query: 91 PIEVNLLNYKKDGTPFW-MLFKMSL 114
LNYK DGTPFW LF +L
Sbjct: 61 DATTCFLNYKADGTPFWNQLFVAAL 85
Score = 72.4 bits (176), Expect = 3e-10, Method: Composition-based stats.
Identities = 32/69 (46%), Positives = 44/69 (63%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYP 313
FVL DP LPD P+V+AS F KLTGY R++V+G+NCRFL G TD + + AI+
Sbjct: 1 FVLSDPRLPDNPIVFASPGFYKLTGYTRDQVLGRNCRFLQGTGTDPKAIDVIRTAIANGT 60
Query: 314 KKKSIYMEY 322
+ ++ Y
Sbjct: 61 DATTCFLNY 69
>gi|126665177|ref|ZP_01736160.1| sensory box/GGDEF domain protein [Marinobacter sp. ELB17]
gi|126630547|gb|EBA01162.1| sensory box/GGDEF domain protein [Marinobacter sp. ELB17]
Length = 429
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 71/115 (61%), Gaps = 3/115 (2%)
Query: 23 ALDELPDSFTITDPS--ISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
AL++ ++ +TD + GH IVFA++ FL+M+G++ E++GRN R+ QGP TN I
Sbjct: 16 ALEQSYNAVLLTDANSGAEGHRIVFANQAFLRMTGYNEEELLGRNPRLLQGPATNPDVID 75
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135
+R + + + + +NY+KDG P+ + + +S V E G THF+++Q I S
Sbjct: 76 RLRHCLHDGTHFQGSTINYRKDGRPYTVEWNISPV-RNEAGEITHFISLQRDISS 129
Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 266 MVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+V+A+ AFL++TGY+ E++G+N R L G T+ V+
Sbjct: 38 IVFANQAFLRMTGYNEEELLGRNPRLLQGPATNPDVI 74
>gi|393769090|ref|ZP_10357618.1| signal transduction histidine kinase [Methylobacterium sp. GXF4]
gi|392725331|gb|EIZ82668.1| signal transduction histidine kinase [Methylobacterium sp. GXF4]
Length = 346
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 59/110 (53%), Gaps = 2/110 (1%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+A P ITD +PI + + FL ++GF+ E++GRN RM QGP T+ +
Sbjct: 4 DAFARSPSPMVITDARAPDNPITWVNDAFLGLTGFATDELLGRNCRMLQGPGTDPAEVAR 63
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
I AI P+ LLNY+KDGTP+W ++ V E G A +F A Q
Sbjct: 64 IHAAIEAGEPVTAELLNYRKDGTPYWSAMTVTPVH-DEAGLA-YFYAAQA 111
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L + R V+ D PD P+ + +DAFL LTG+ +E++G+NCR L G TD +
Sbjct: 2 LVDAFARSPSPMVITDARAPDNPITWVNDAFLGLTGFATDELLGRNCRMLQGPGTDPAEV 61
Query: 303 YQVSIAI 309
++ AI
Sbjct: 62 ARIHAAI 68
>gi|223996948|ref|XP_002288147.1| hypothetical protein THAPSDRAFT_33193 [Thalassiosira pseudonana
CCMP1335]
gi|220975255|gb|EED93583.1| hypothetical protein THAPSDRAFT_33193 [Thalassiosira pseudonana
CCMP1335]
Length = 113
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 66/113 (58%), Gaps = 4/113 (3%)
Query: 24 LDELPD---SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
L+ PD SF ITDP +P+++ S GF K++G+ +++G+N R QG T+R I
Sbjct: 2 LNASPDDSVSFCITDPHQPDNPVIYISGGFCKLTGYDFEDVVGKNCRFLQGEETSREDIK 61
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
I +A++EE+ VNLLNYKK+G F F ++ + A +F+ +Q +
Sbjct: 62 RISDALKEEKECSVNLLNYKKNGEKFVNEFFLTQLRTPSQELA-YFIGIQAAV 113
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 39/57 (68%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
SF + DPH PD P++Y S F KLTGYD +VVG+NCRFL G +T + ++S A+
Sbjct: 11 SFCITDPHQPDNPVIYISGGFCKLTGYDFEDVVGKNCRFLQGEETSREDIKRISDAL 67
>gi|443477887|ref|ZP_21067698.1| multi-sensor signal transduction histidine kinase [Pseudanabaena
biceps PCC 7429]
gi|443016903|gb|ELS31469.1| multi-sensor signal transduction histidine kinase [Pseudanabaena
biceps PCC 7429]
Length = 945
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 76/140 (54%), Gaps = 18/140 (12%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88
+ ITD + +P ++ + F +++G+S AE+IGRN R QG + I+++ +AI+E
Sbjct: 267 NGIVITDATKPENPTIYVNPSFERITGYSAAEVIGRNCRFLQGGDRQQIGILDLHQAIQE 326
Query: 89 ERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV-----------SRK 137
+R LLNY+K+GTPFW ++ VF + G T+++ +Q I S +
Sbjct: 327 QRECHAVLLNYRKNGTPFWNDLYIAPVFN-DRGELTNYIGIQTDITEQVKSTQRLLESEE 385
Query: 138 HMRN------SGMSYSEDGG 151
+R G+++S+D G
Sbjct: 386 RLRTVLTSIKEGITFSDDSG 405
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYP 313
V+ D P+ P +Y + +F ++TGY EV+G+NCRFL G D + + AI
Sbjct: 269 IVITDATKPENPTIYVNPSFERITGYSAAEVIGRNCRFLQGGDRQQIGILDLHQAIQEQR 328
Query: 314 KKKSIYMEY 322
+ ++ + Y
Sbjct: 329 ECHAVLLNY 337
>gi|406866633|gb|EKD19672.1| nonphototropic hypocotyl 1 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 606
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 68/116 (58%), Gaps = 3/116 (2%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L D F +TDP + +PI FAS GF+ ++G+SR +I+ RN R QG RT+R + +R +I
Sbjct: 258 LGDCFCLTDPKTADNPIRFASDGFVAVTGYSRRDIVPRNCRFLQGDRTDRVAVRRLRASI 317
Query: 87 RE-ERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
E +E+ LLNY+K+G PFW L ++ + E G F+ Q+ + H N
Sbjct: 318 DACEETVEL-LLNYRKNGDPFWNLLYVAPLL-DESGEVCFFLGGQINCSTTIHSCN 371
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYP 313
F L DP D P+ +ASD F+ +TGY R ++V +NCRFL G TD + ++ +I
Sbjct: 262 FCLTDPKTADNPIRFASDGFVAVTGYSRRDIVPRNCRFLQGDRTDRVAVRRLRASIDACE 321
Query: 314 KKKSIYMEY 322
+ + + Y
Sbjct: 322 ETVELLLNY 330
>gi|428319417|ref|YP_007117299.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(s) [Oscillatoria nigro-viridis PCC 7112]
gi|428243097|gb|AFZ08883.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(s) [Oscillatoria nigro-viridis PCC 7112]
Length = 1344
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 71/130 (54%), Gaps = 1/130 (0%)
Query: 8 IEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGR 67
IE+ + + A++ + ITD +++ +PI++ + F +++G+ R E++G+N R
Sbjct: 333 IERIISQERLQMMERAIESCSNGIAITDATVADNPIIYVNPSFERITGYRRDELMGKNCR 392
Query: 68 MFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFV 127
Q T+ ++R AI E R +V L N++KDGTPFW ++ V+ THF+
Sbjct: 393 FLQDTDTDSPAAKQLRIAIEEGRESQVILRNFRKDGTPFWHELSIAPVYNSRR-HLTHFI 451
Query: 128 AVQVPIVSRK 137
VQ I R+
Sbjct: 452 GVQTDITDRQ 461
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 37/56 (66%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ D + D P++Y + +F ++TGY R+E++G+NCRFL DTD+ Q+ IAI
Sbjct: 356 IAITDATVADNPIIYVNPSFERITGYRRDELMGKNCRFLQDTDTDSPAAKQLRIAI 411
>gi|421465104|ref|ZP_15913792.1| PAS domain S-box protein [Acinetobacter radioresistens WC-A-157]
gi|400204366|gb|EJO35350.1| PAS domain S-box protein [Acinetobacter radioresistens WC-A-157]
Length = 855
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 64/110 (58%), Gaps = 2/110 (1%)
Query: 28 PDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIR 87
P+ ITD + + IV+ + FL M+G++ +++G+ QGP T I +++A++
Sbjct: 309 PNGIIITDAT-AERKIVYVNPAFLHMTGYTEEDVMGKTCHFLQGPETEAEKIALVQQALK 367
Query: 88 EERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
E + I+V + NY+KDG+ FW + VF E GR THF+ +Q I ++
Sbjct: 368 EHKEIQVTVKNYRKDGSWFWNRLMLGPVF-DEAGRCTHFLGIQEDITQQR 416
Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYPK 314
++I + +VY + AFL +TGY +V+G+ C FL G +T+ + V A+ + +
Sbjct: 312 IIITDATAERKIVYVNPAFLHMTGYTEEDVMGKTCHFLQGPETEAEKIALVQQALKEHKE 371
>gi|452207683|ref|YP_007487805.1| sensor box histidine kinase [Natronomonas moolapensis 8.8.11]
gi|452083783|emb|CCQ37110.1| sensor box histidine kinase [Natronomonas moolapensis 8.8.11]
Length = 1490
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 65/122 (53%), Gaps = 1/122 (0%)
Query: 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
+A+D ITDP +PI + ++GF ++G+ A+++G N R GP T+ +
Sbjct: 655 EQAIDSSNVGVIITDPQREDNPIEYINKGFSDITGYQEADVVGCNPRFLHGPETDPEELS 714
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140
+REAI P+ V L NY+KDG+ +W ++ V DG + F+ +Q + +R+
Sbjct: 715 RLREAIAAGEPVTVELKNYRKDGSEYWNRLSVTPVTAA-DGTLSKFIGIQQDVTARRQRT 773
Query: 141 NS 142
S
Sbjct: 774 RS 775
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
++ DP D P+ Y + F +TGY +VVG N RFL+G +TD L ++ AI+
Sbjct: 666 IITDPQREDNPIEYINKGFSDITGYQEADVVGCNPRFLHGPETDPEELSRLREAIA 721
>gi|76803395|ref|YP_327664.1| signal-transducing histidine kinase [Natronomonas pharaonis DSM
2160]
gi|76559210|emb|CAI50812.1| sensor box histidine kinase [Natronomonas pharaonis DSM 2160]
Length = 596
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
Query: 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNR 76
T W EA+ E P +I D PI + + F++++G++RAE++GRN R QG T
Sbjct: 130 TFW-EEAMHEAPVGISIADARKDDLPITYVNNRFVEITGYARAEVLGRNCRFLQGEATRD 188
Query: 77 RTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
I ++R AI V L NY+KDGT FW +S +G TH++ Q I
Sbjct: 189 EPIAQLRAAIERGETATVELRNYRKDGTMFWNRVTVS-PLKNHNGEVTHYIGFQEDISEA 247
Query: 137 K 137
K
Sbjct: 248 K 248
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%)
Query: 256 LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ D D+P+ Y ++ F+++TGY R EV+G+NCRFL G T + Q+ AI
Sbjct: 145 IADARKDDLPITYVNNRFVEITGYARAEVLGRNCRFLQGEATRDEPIAQLRAAI 198
>gi|255318187|ref|ZP_05359426.1| two-component response regulator [Acinetobacter radioresistens
SK82]
gi|262379605|ref|ZP_06072761.1| two-component response regulator [Acinetobacter radioresistens
SH164]
gi|255304733|gb|EET83911.1| two-component response regulator [Acinetobacter radioresistens
SK82]
gi|262299062|gb|EEY86975.1| two-component response regulator [Acinetobacter radioresistens
SH164]
Length = 855
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 64/110 (58%), Gaps = 2/110 (1%)
Query: 28 PDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIR 87
P+ ITD + + IV+ + FL M+G++ +++G+ QGP T I +++A++
Sbjct: 309 PNGIIITDAT-AERKIVYVNPAFLHMTGYTEEDVMGKTCHFLQGPETEAEKIALVQQALK 367
Query: 88 EERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
E + I+V + NY+KDG+ FW + VF E GR THF+ +Q I ++
Sbjct: 368 EHKEIQVTVKNYRKDGSWFWNRLMLGPVF-DEAGRCTHFLGIQEDITQQR 416
Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYPK 314
++I + +VY + AFL +TGY +V+G+ C FL G +T+ + V A+ + +
Sbjct: 312 IIITDATAERKIVYVNPAFLHMTGYTEEDVMGKTCHFLQGPETEAEKIALVQQALKEHKE 371
>gi|408675683|ref|YP_006875431.1| PAS/PAC sensor signal transduction histidine kinase [Emticicia
oligotrophica DSM 17448]
gi|387857307|gb|AFK05404.1| PAS/PAC sensor signal transduction histidine kinase [Emticicia
oligotrophica DSM 17448]
Length = 1719
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 68/111 (61%), Gaps = 4/111 (3%)
Query: 29 DSFTITDPSISGHP---IVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+P P I++A++ F KM+G+ EIIG+ R+ QGP+++ + + + +A
Sbjct: 1144 DAILITEPEPFDEPGPKIMYANKAFTKMTGYEVEEIIGKTPRILQGPKSDFKELARLSQA 1203
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+R+ EV+ +NYKK+G FW+ F ++ V E G TH++A++ I +
Sbjct: 1204 LRKWESCEVSTINYKKNGEEFWVNFTVTPV-ANEKGWFTHWIAIERDITEK 1253
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 253 SFVLIDPHLPDMP---MVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ ++ +P D P ++YA+ AF K+TGY+ E++G+ R L G +D L ++S A+
Sbjct: 1145 AILITEPEPFDEPGPKIMYANKAFTKMTGYEVEEIIGKTPRILQGPKSDFKELARLSQAL 1204
Query: 310 SPY 312
+
Sbjct: 1205 RKW 1207
>gi|251772029|gb|EES52601.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
[Leptospirillum ferrodiazotrophum]
Length = 1594
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
Query: 43 IVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKD 102
I+F + F ++G+S+ E+ G+N R+ QG T +T+ EIR AI ERP +LNY+KD
Sbjct: 943 ILFVNESFTTITGYSQEEVQGKNLRILQGEGTESKTVEEIRRAIEGERPFRGQILNYRKD 1002
Query: 103 GTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
G+PFW L +S V E GR FV VQ
Sbjct: 1003 GSPFWNLLTISPV-RDESGRLVEFVGVQ 1029
>gi|328850959|gb|EGG00118.1| hypothetical protein MELLADRAFT_118111 [Melampsora larici-populina
98AG31]
Length = 764
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L DSF +++P +P+V S GF ++G+ IIGRN R QGP+TN +I +R+ +
Sbjct: 402 LGDSFVLSNPRFRDNPVVIVSPGFAAVTGYDSKGIIGRNCRFLQGPKTNPNSIERLRKGL 461
Query: 87 REERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
+ P LLNY+ DGTPF L + +F ++ G T+++ QV +
Sbjct: 462 QAGEPCVELLLNYRSDGTPFQCLLTILPLFDQKGG-LTYYIGGQVNVT 508
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
Y LG SFVL +P D P+V S F +TGYD ++G+NCRFL G T+
Sbjct: 399 YSGLG---DSFVLSNPRFRDNPVVIVSPGFAAVTGYDSKGIIGRNCRFLQGPKTN 450
>gi|397569305|gb|EJK46660.1| hypothetical protein THAOC_34663 [Thalassiosira oceanica]
Length = 211
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
SF + D PI+FAS GF K++G+ EI GRN R QG T + + IR AI+ +
Sbjct: 87 SFCVCDHEKPDCPIIFASDGFCKLTGYGHTEIEGRNCRFLQGSETRKEDVDRIRSAIKSQ 146
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
VNLLNYKKDGT F F ++ + D R +++ VQ +
Sbjct: 147 TEASVNLLNYKKDGTAFNNQFFLAPL-RDADERTAYYIGVQCSV 189
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
S G SF + D PD P+++ASD F KLTGY E+ G+NCRFL G +T + ++
Sbjct: 80 SAGHEDVSFCVCDHEKPDCPIIFASDGFCKLTGYGHTEIEGRNCRFLQGSETRKEDVDRI 139
Query: 306 SIAI 309
AI
Sbjct: 140 RSAI 143
>gi|255019342|ref|ZP_05291462.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(s) [Acidithiobacillus caldus ATCC 51756]
gi|254971214|gb|EET28656.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(s) [Acidithiobacillus caldus ATCC 51756]
Length = 913
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 74/133 (55%), Gaps = 8/133 (6%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL + + +TD + +V+A+ FL++SG+ AEI+G+N R QGP T+ T +
Sbjct: 133 ALRAIDEGVLLTD---AEQRVVYANPAFLRLSGYELAEILGKNCRFLQGPDTDPATRQSL 189
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV----SRKH 138
+A+ E R ++LNY++DGTPFW +S V + G THFV+VQ + + +
Sbjct: 190 HDALAEGRVFHGDILNYRQDGTPFWNALNISPVRDAQ-GHITHFVSVQRDVTLSRRTEQE 248
Query: 139 MRNSGMSYSEDGG 151
+R S ++ G
Sbjct: 249 LRLSAQAFETQEG 261
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 266 MVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
+VYA+ AFL+L+GY+ E++G+NCRFL G DTD + A++
Sbjct: 150 VVYANPAFLRLSGYELAEILGKNCRFLQGPDTDPATRQSLHDALA 194
>gi|254435896|ref|ZP_05049403.1| PAS domain S-box, putative [Nitrosococcus oceani AFC27]
gi|207089007|gb|EDZ66279.1| PAS domain S-box, putative [Nitrosococcus oceani AFC27]
Length = 147
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 70/117 (59%), Gaps = 1/117 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ + LD + ++TDP +P+++ + F K++G+ + EI+G+N R+ QG ++
Sbjct: 16 LSQILDSCVNGISLTDPDQEDNPLIYVNEAFEKITGYKKEEILGKNCRILQGNDRDQEGS 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+REAI++ P+EV+L NYKK+G F+ ++ VF +E G +F+ VQ + +
Sbjct: 76 RRVREAIQKRVPVEVDLKNYKKNGELFYNHLAINPVFDQE-GNLLYFLGVQYDVTKQ 131
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 38/74 (51%)
Query: 237 GFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296
G I L L L DP D P++Y ++AF K+TGY + E++G+NCR L G D
Sbjct: 10 GLIPRVLSQILDSCVNGISLTDPDQEDNPLIYVNEAFEKITGYKKEEILGKNCRILQGND 69
Query: 297 TDTTVLYQVSIAIS 310
D +V AI
Sbjct: 70 RDQEGSRRVREAIQ 83
>gi|323489144|ref|ZP_08094376.1| blue light GTP-binding receptor [Planococcus donghaensis MPA1U2]
gi|323397031|gb|EGA89845.1| blue light GTP-binding receptor [Planococcus donghaensis MPA1U2]
Length = 282
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 51/75 (68%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDPS +PI++ ++ F+ M+G+S+ EIIGRN R QG T + I ++R AI E +
Sbjct: 42 VTDPSQPDNPIIYTNQTFIDMTGYSQEEIIGRNCRFLQGAGTAKEDIEKMRTAIAAEEKV 101
Query: 93 EVNLLNYKKDGTPFW 107
V + NY+KDG+PFW
Sbjct: 102 IVTIQNYRKDGSPFW 116
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYPK 314
++ DP PD P++Y + F+ +TGY + E++G+NCRFL G T + ++ AI+ K
Sbjct: 41 IVTDPSQPDNPIIYTNQTFIDMTGYSQEEIIGRNCRFLQGAGTAKEDIEKMRTAIAAEEK 100
>gi|403166863|ref|XP_003889942.1| hypothetical protein PGTG_21385 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375166743|gb|EHS63235.1| hypothetical protein PGTG_21385 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 612
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 70/123 (56%), Gaps = 3/123 (2%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
E L DSF +T+P + +P+V S F +G R IIG+N R QGP T+ ++I
Sbjct: 354 ETCQGLGDSFCVTNPRLRDNPVVMVSPSFSATTGHDRHLIIGKNCRFLQGPGTSPQSIQR 413
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
+R+A+++ P LLNYK DGTPF+ L + +F E G ++++ Q+ + +RN
Sbjct: 414 LRQALKQGLPSVELLLNYKADGTPFYCLLSIIPLFD-EKGFLSYYIGGQINVTD--ELRN 470
Query: 142 SGM 144
+ +
Sbjct: 471 NQL 473
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 35/57 (61%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
SF + +P L D P+V S +F TG+DR+ ++G+NCRFL G T + ++ A+
Sbjct: 362 SFCVTNPRLRDNPVVMVSPSFSATTGHDRHLIIGKNCRFLQGPGTSPQSIQRLRQAL 418
>gi|398336905|ref|ZP_10521610.1| histidine kinase sensor protein [Leptospira kmetyi serovar Malaysia
str. Bejo-Iso9]
Length = 739
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 73/115 (63%), Gaps = 3/115 (2%)
Query: 24 LDELPDSFTITDPSIS--GHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
++++ DS +TD S+ G I+FA+ F KM+G+ +E+IG+N R+FQGP TNR+ + +
Sbjct: 19 VNQISDSILVTDASLEPPGPKIIFANPAFCKMTGYQSSELIGQNPRIFQGPLTNRKVLGD 78
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
++ ++ + R +NYKKDGTP+ + ++S + +G +F+++Q I +
Sbjct: 79 LKRSLAQGRDFSGEAVNYKKDGTPYNVELQVSAI-RDANGIVLYFISIQRDITEK 132
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 240 SSSLY-ISLGRIKQSFVLIDPHL--PDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296
S LY I + +I S ++ D L P +++A+ AF K+TGY +E++GQN R G
Sbjct: 11 SQELYEILVNQISDSILVTDASLEPPGPKIIFANPAFCKMTGYQSSELIGQNPRIFQGPL 70
Query: 297 TDTTVL 302
T+ VL
Sbjct: 71 TNRKVL 76
>gi|372272915|ref|ZP_09508963.1| hypothetical protein MstaS_17619 [Marinobacterium stanieri S30]
Length = 690
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 75/132 (56%), Gaps = 2/132 (1%)
Query: 16 YTLWVHEALDELPDSFTITDPSISGHP-IVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
+ L++ +LD L D +TD + P IV+ ++ + +G+SR ++G++ R FQGP+T
Sbjct: 12 HLLFMQASLDHLSDLVIVTDTDLEAGPSIVYVNQAVVNRTGYSREYLLGKSPRTFQGPKT 71
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
+ + I EA+ ++R + L+NY + G P+W+ + + + G+ THFV+ Q I
Sbjct: 72 DPKARKRISEALHQQREVREELINYTRAGEPYWVEVCIRPLRDAQ-GQHTHFVSTQRDIT 130
Query: 135 SRKHMRNSGMSY 146
RK + + M +
Sbjct: 131 ERKKIESDLMLF 142
>gi|402771419|ref|YP_006590956.1| AraC family transcriptional regulator [Methylocystis sp. SC2]
gi|401773439|emb|CCJ06305.1| Transcriptional regulator with PAS/PAC sensors, AraC family
[Methylocystis sp. SC2]
Length = 488
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 63/110 (57%), Gaps = 1/110 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
D + T+ DP + PI++A+R F++++G+ EIIGRN R QG ++ + +R
Sbjct: 358 FDACVNGVTLADPDLEDSPIIYANRPFMRITGYELDEIIGRNCRFLQGEDRDQEGRLRLR 417
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
EA+R IEV L NY+KDG F ++ +F DGR +F+ VQ +
Sbjct: 418 EALRNREQIEVTLRNYRKDGALFHNKLNITPLF-DADGRLLYFLGVQYDV 466
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 33/44 (75%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
L DP L D P++YA+ F+++TGY+ +E++G+NCRFL G D D
Sbjct: 366 TLADPDLEDSPIIYANRPFMRITGYELDEIIGRNCRFLQGEDRD 409
>gi|448407789|ref|ZP_21573984.1| pas domain s-box [Halosimplex carlsbadense 2-9-1]
gi|445675039|gb|ELZ27574.1| pas domain s-box [Halosimplex carlsbadense 2-9-1]
Length = 648
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 83/178 (46%), Gaps = 19/178 (10%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE ++ D + P+V+ + GF +++G+ E++GRN R QG T+ T+ +
Sbjct: 302 AMDEAEIGISLVDGTDPERPLVYVNEGFGRVTGYDPEELLGRNCRFLQGEATDPETVATL 361
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R I P+ ++NY+ DG+PFW ++ + + G THF+ Q + RK
Sbjct: 362 RAGIEAHEPVSTEIVNYRADGSPFWNRVQLYPIE-NDAGTVTHFLGFQDDVTERKR---- 416
Query: 143 GMSYSEDGGGSRLREIVFGSCRREVCSD-----SLLDLDRVLALDSDDTGLEIEDSCE 195
RLR ++ R + +D + ++ R D D G IEDS E
Sbjct: 417 ---------AERLRALLNRVLRHNLGNDITPFMAFGEMLRTGEHDVADLGARIEDSAE 465
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%)
Query: 256 LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYPKK 315
L+D P+ P+VY ++ F ++TGYD E++G+NCRFL G TD + + I +
Sbjct: 312 LVDGTDPERPLVYVNEGFGRVTGYDPEELLGRNCRFLQGEATDPETVATLRAGIEAHEPV 371
Query: 316 KSIYMEY 322
+ + Y
Sbjct: 372 STEIVNY 378
>gi|390949606|ref|YP_006413365.1| PAS domain-containing protein [Thiocystis violascens DSM 198]
gi|390426175|gb|AFL73240.1| PAS domain S-box [Thiocystis violascens DSM 198]
Length = 515
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 71/132 (53%), Gaps = 1/132 (0%)
Query: 9 EQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM 68
E++ ++ W ++ + ++ D P+V+A+ FL M+G++ AEI+GRN R
Sbjct: 6 EKADDSELLRWKMRVMEAINSGVSVADAREPDLPLVYANPAFLAMTGYTAAEILGRNCRF 65
Query: 69 FQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVA 128
Q T + I IR A+RE R V L NY+KDG+ FW ++ V + G+ TH+V
Sbjct: 66 LQAHDTRQPEIETIRAALREGRETSVLLRNYRKDGSLFWNQLTLAPVR-DQCGQITHYVG 124
Query: 129 VQVPIVSRKHMR 140
+Q + + K +
Sbjct: 125 IQQDMTALKEAQ 136
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDT 297
I + D PD+P+VYA+ AFL +TGY E++G+NCRFL DT
Sbjct: 24 INSGVSVADAREPDLPLVYANPAFLAMTGYTAAEILGRNCRFLQAHDT 71
>gi|323139015|ref|ZP_08074075.1| transcriptional regulator with PAS/PAC sensors, AraC family
[Methylocystis sp. ATCC 49242]
gi|322395769|gb|EFX98310.1| transcriptional regulator with PAS/PAC sensors, AraC family
[Methylocystis sp. ATCC 49242]
Length = 490
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 66/113 (58%), Gaps = 1/113 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
LD + T+TDP + PIV+A++ F ++G+S AEIIGRN R QG ++ + +R
Sbjct: 361 LDTCVNGVTLTDPDLEDAPIVYANKRFEDITGYSVAEIIGRNCRFLQGQDRDQEGLRRLR 420
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
EAI + IEV L NY+KDG F ++ +F + G+ +F+ VQ + +
Sbjct: 421 EAISNRQAIEVTLRNYRKDGALFHNKLNITPLFDAQ-GQLIYFLGVQYDVTDQ 472
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 35/56 (62%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
L DP L D P+VYA+ F +TGY E++G+NCRFL G D D L ++ AIS
Sbjct: 369 TLTDPDLEDAPIVYANKRFEDITGYSVAEIIGRNCRFLQGQDRDQEGLRRLREAIS 424
>gi|240140029|ref|YP_002964506.1| histidine kinase; HK, ATPase and sensory PAS domain
[Methylobacterium extorquens AM1]
gi|418061648|ref|ZP_12699494.1| signal transduction histidine kinase [Methylobacterium extorquens
DSM 13060]
gi|240010003|gb|ACS41229.1| Putative histidine kinase; putative HK, ATPase and sensory PAS
domain [Methylobacterium extorquens AM1]
gi|373564801|gb|EHP90884.1| signal transduction histidine kinase [Methylobacterium extorquens
DSM 13060]
Length = 354
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 62/110 (56%), Gaps = 1/110 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+ ITDP +PI++A+ FL+++G++R E+ GRN R QGP T+ + IR AI E
Sbjct: 35 AMIITDPRRLDNPIIYANDAFLRLTGYTRLEVTGRNCRFLQGPGTDFDAVARIRAAIDAE 94
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
R + LLNY+KDG+ F +S V EDG + A Q + R +
Sbjct: 95 RDVHEELLNYRKDGSTFHNALYISPVH-DEDGTLLFYFASQFDVSERHAL 143
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 40/59 (67%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ + ++ DP D P++YA+DAFL+LTGY R EV G+NCRFL G TD + ++ AI
Sbjct: 33 RMAMIITDPRRLDNPIIYANDAFLRLTGYTRLEVTGRNCRFLQGPGTDFDAVARIRAAI 91
>gi|297592077|gb|ADI46862.1| AMPKR1f [Volvox carteri f. nagariensis]
Length = 859
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 68/127 (53%), Gaps = 3/127 (2%)
Query: 14 NRYTL---WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQ 70
N +TL + A++ + S T++DP G+P+ + S GFL M+G++ E +GRN + Q
Sbjct: 79 NSFTLEDESLSAAMESILSSLTVSDPHEEGNPLCYVSPGFLSMTGYNEDECLGRNCKFLQ 138
Query: 71 GPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
+ + T +R AI E R V + N++K G PF L + VFG++ HFV V
Sbjct: 139 DGKLDPSTHEALRSAISERRFATVEVTNFRKGGRPFQNLLSLLPVFGEDGASLLHFVGVH 198
Query: 131 VPIVSRK 137
+ R+
Sbjct: 199 CDLDERR 205
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 231 CSLP----GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVG 286
CSLP SL ++ I S + DPH P+ Y S FL +TGY+ +E +G
Sbjct: 72 CSLPPKENSFTLEDESLSAAMESILSSLTVSDPHEEGNPLCYVSPGFLSMTGYNEDECLG 131
Query: 287 QNCRFLNGVDTDTTVLYQVSIAIS 310
+NC+FL D + + AIS
Sbjct: 132 RNCKFLQDGKLDPSTHEALRSAIS 155
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%)
Query: 47 SRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPF 106
S GF ++G+S++E++G N GP T + + ++ + + V +L YK+DGTPF
Sbjct: 233 SPGFTALTGYSQSEVMGWNMLCLCGPETAEKEMRKLITSQWAHSSVAVKMLCYKRDGTPF 292
Query: 107 WML 109
W L
Sbjct: 293 WAL 295
>gi|378734080|gb|EHY60539.1| non-specific serine/threonine protein kinase [Exophiala
dermatitidis NIH/UT8656]
Length = 603
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 69/114 (60%), Gaps = 5/114 (4%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L D F +TDP+ + +PIV+AS GF+K++G+SR EII RN R Q T++ + +REAI
Sbjct: 286 LGDCFVLTDPTKADNPIVYASDGFVKVTGYSRTEIIPRNCRFLQCRHTDKSAVGRLREAI 345
Query: 87 --REERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
R+E +E+ LLN KK G PFW L + +F + G F+ QV + H
Sbjct: 346 VLRQES-VEL-LLNQKKSGEPFWNLLYTTPLF-DDRGNLVFFLGGQVNCSTTIH 396
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLY 303
Y LG FVL DP D P+VYASD F+K+TGY R E++ +NCRFL TD + +
Sbjct: 283 YAGLG---DCFVLTDPTKADNPIVYASDGFVKVTGYSRTEIIPRNCRFLQCRHTDKSAVG 339
Query: 304 QVSIAI 309
++ AI
Sbjct: 340 RLREAI 345
>gi|34224025|gb|AAQ63177.1| phototropin-like protein [Pisum sativum]
Length = 468
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 7/134 (5%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL +F ++D + +PI++AS GF M+G++ E+IGRN R QG T+ +
Sbjct: 155 LRDALSAFQQTFVVSDATKPDYPIMYASAGFFNMTGYTSKEVIGRNCRSMQGADTDPNDV 214
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI------ 133
+IREA+ LLNYKKDGT FW L ++ + E G+ + +QV +
Sbjct: 215 AKIREAVAAGTSYCGRLLNYKKDGTTFWNLLTIAPI-KDEHGKILKLIGMQVEVSKHTEG 273
Query: 134 VSRKHMRNSGMSYS 147
K +R +G+ S
Sbjct: 274 TKEKMLRPNGLPES 287
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 46/76 (60%)
Query: 235 GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG 294
G+ +S L +L +Q+FV+ D PD P++YAS F +TGY EV+G+NCR + G
Sbjct: 147 GIPRVSEDLRDALSAFQQTFVVSDATKPDYPIMYASAGFFNMTGYTSKEVIGRNCRSMQG 206
Query: 295 VDTDTTVLYQVSIAIS 310
DTD + ++ A++
Sbjct: 207 ADTDPNDVAKIREAVA 222
>gi|448440113|ref|ZP_21588361.1| histidine kinase [Halorubrum saccharovorum DSM 1137]
gi|445690630|gb|ELZ42840.1| histidine kinase [Halorubrum saccharovorum DSM 1137]
Length = 475
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 64/115 (55%), Gaps = 2/115 (1%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P + +P +P+ + + F +++G+ E++G++ R+ QG T+ T I
Sbjct: 144 AMDEAPVGIALAEPGTGNNPLTYVNEEFERLTGYG-PEVLGKDCRLLQGEDTDPATTAAI 202
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
REAI +ERP+ V++LNY+ +G FW ++ + E G FV Q I RK
Sbjct: 203 REAIDDERPVSVDILNYRANGKKFWNQLTVAPIH-DETGDVIRFVGFQTDITDRK 256
Score = 44.3 bits (103), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
L +P + P+ Y ++ F +LTGY EV+G++CR L G DTD + AI
Sbjct: 152 IALAEPGTGNNPLTYVNEEFERLTGYG-PEVLGKDCRLLQGEDTDPATTAAIREAI 206
>gi|77166433|ref|YP_344958.1| PAS domain-containing protein [Nitrosococcus oceani ATCC 19707]
gi|76884747|gb|ABA59428.1| PAS domain protein [Nitrosococcus oceani ATCC 19707]
Length = 150
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 70/117 (59%), Gaps = 1/117 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ + LD + ++TDP +P+++ + F K++G+ + EI+G+N R+ QG ++
Sbjct: 19 LSQILDSCVNGISLTDPDQEDNPLIYVNEAFEKITGYKKEEILGKNCRILQGNDRDQEGS 78
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+REAI++ P+EV+L NYKK+G F+ ++ VF +E G +F+ VQ + +
Sbjct: 79 RRVREAIQKRVPVEVDLKNYKKNGELFYNHLAINPVFDQE-GNLLYFLGVQYDVTKQ 134
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 38/74 (51%)
Query: 237 GFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296
G I L L L DP D P++Y ++AF K+TGY + E++G+NCR L G D
Sbjct: 13 GLIPRVLSQILDSCVNGISLTDPDQEDNPLIYVNEAFEKITGYKKEEILGKNCRILQGND 72
Query: 297 TDTTVLYQVSIAIS 310
D +V AI
Sbjct: 73 RDQEGSRRVREAIQ 86
>gi|424073934|ref|ZP_17811346.1| sensor y box/GGDEF domain-containing protein domain/EAL domain
protein [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
gi|407995230|gb|EKG35767.1| sensor y box/GGDEF domain-containing protein domain/EAL domain
protein [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
Length = 787
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 70/118 (59%), Gaps = 6/118 (5%)
Query: 29 DSFTITDPS---ISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+ + G IV+ + FL +GFS E+IG+ R+ Q +NR T+ ++R +
Sbjct: 167 DAILITEAEPIDMPGPRIVYCNPAFLANTGFSLEEVIGQTPRILQCEESNRDTLRQLRAS 226
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATHFVAVQVPIVSRKHMRNS 142
++ PIEV L+N ++DGT FW+ +MS+V E+G TH+V+VQ I RK +
Sbjct: 227 LQRWEPIEVELINARRDGTRFWV--QMSIVPVANENGWFTHWVSVQRDITERKEAEEA 282
>gi|443317279|ref|ZP_21046694.1| PAS domain S-box [Leptolyngbya sp. PCC 6406]
gi|442783098|gb|ELR93023.1| PAS domain S-box [Leptolyngbya sp. PCC 6406]
Length = 924
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 73/124 (58%), Gaps = 5/124 (4%)
Query: 29 DSFTITDPSISGHP---IVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+ P I++ ++ F + +G+S E++G+ R+FQG +T+R + +R +
Sbjct: 428 DAVLITEAEPIDEPGPRILYVNKAFTRTTGYSLEEVVGKTPRIFQGSKTDRAVLDIVRAS 487
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMS 145
+ E RP+ ++NY+KDG+ FW+ F + V + G TH++AVQ I RK + +
Sbjct: 488 LLEWRPVTAEVINYRKDGSEFWVEFSIVPVADR-TGYYTHWIAVQRDITERKRIEQE-LR 545
Query: 146 YSED 149
+SE+
Sbjct: 546 WSEE 549
>gi|448465905|ref|ZP_21598953.1| histidine kinase [Halorubrum kocurii JCM 14978]
gi|445814843|gb|EMA64800.1| histidine kinase [Halorubrum kocurii JCM 14978]
Length = 493
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 64/115 (55%), Gaps = 2/115 (1%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P T+ +P P+ + + F +++G+ E++G++ R QG TN T+ I
Sbjct: 162 AMDEAPVGITLAEPGSENKPLTYVNEEFERLTGYG-PEMLGKDCRFLQGEGTNPETVATI 220
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
REAI +ERP+ V++LNY+ +G FW ++ + E G +V Q I RK
Sbjct: 221 REAIDDERPVSVDILNYRANGQKFWNQLTVAPIR-DETGAVIRYVGFQTDITERK 274
Score = 41.2 bits (95), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
L +P + P+ Y ++ F +LTGY E++G++CRFL G T+ + + AI
Sbjct: 170 ITLAEPGSENKPLTYVNEEFERLTGYG-PEMLGKDCRFLQGEGTNPETVATIREAI 224
>gi|17230367|ref|NP_486915.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
gi|17131969|dbj|BAB74574.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
Length = 1817
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 87/173 (50%), Gaps = 18/173 (10%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL + I+D + +P+++ + F +++G+ E++GRN R G T + I E+
Sbjct: 443 ALAASSNGIVISDAKLPHYPVIYVNSAFEQITGYKATEVVGRNCRFLLGNDTQQSAIEEL 502
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH---- 138
R A++ + +V L NY+KDG+ FW +S ++ ++G+ +HF+ +Q I R+
Sbjct: 503 RSALKAGKNCKVILRNYRKDGSLFWNQLSVSPIYN-DNGQLSHFIGIQTDISDRQQAEAS 561
Query: 139 MRNSGMSYSE--DG------GGSRL-----REIVFGSCRREVCSDSLLDLDRV 178
+R +++ DG G L E +FG + +C S+ L +V
Sbjct: 562 LRRQALTFENIYDGVIITNLQGQILDWNPAAERMFGYSKNHICGQSISTLHKV 614
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
+L V+ D LP P++Y + AF ++TGY EVVG+NCRFL G DT + + ++
Sbjct: 443 ALAASSNGIVISDAKLPHYPVIYVNSAFEQITGYKATEVVGRNCRFLLGNDTQQSAIEEL 502
Query: 306 SIAISPYPKKKSIYMEY 322
A+ K I Y
Sbjct: 503 RSALKAGKNCKVILRNY 519
>gi|257059911|ref|YP_003137799.1| response regulator receiver modulated diguanylate cyclase
[Cyanothece sp. PCC 8802]
gi|256590077|gb|ACV00964.1| response regulator receiver modulated diguanylate cyclase
[Cyanothece sp. PCC 8802]
Length = 481
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 79/152 (51%), Gaps = 6/152 (3%)
Query: 1 MDSQLGLIE--QSFNNRYTL---WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSG 55
+ QL L E Q F+ + + +H+A+ + ITD + +PI++ + GF +M+G
Sbjct: 142 LQRQLDLTEAAQEFHGQPQIDAYLLHQAIKATYNGIIITDATQPDNPIIYVNPGFERMTG 201
Query: 56 FSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLV 115
+S E+ G+N R QG N+ I+ ++ ++E R + + NY+KDG+ FW +S V
Sbjct: 202 YSLEEVKGKNCRFLQGNDRNQPEILYMKTCLQEHRQCFITIRNYRKDGSMFWNEVSLSPV 261
Query: 116 FGKEDGRATHFVAVQVPIVSRKHMRNSGMSYS 147
E G+ +++ VQ + RK + Y
Sbjct: 262 -KDESGKLVYYIGVQTDVTVRKRVEEERQRYE 292
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 10/91 (10%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT-TV 301
L+ ++ ++ D PD P++Y + F ++TGY EV G+NCRFL G D + +
Sbjct: 166 LHQAIKATYNGIIITDATQPDNPIIYVNPGFERMTGYSLEEVKGKNCRFLQGNDRNQPEI 225
Query: 302 LY---------QVSIAISPYPKKKSIYMEYV 323
LY Q I I Y K S++ V
Sbjct: 226 LYMKTCLQEHRQCFITIRNYRKDGSMFWNEV 256
>gi|398804176|ref|ZP_10563175.1| PAS domain S-box, partial [Polaromonas sp. CF318]
gi|398094496|gb|EJL84857.1| PAS domain S-box, partial [Polaromonas sp. CF318]
Length = 985
Score = 80.9 bits (198), Expect = 8e-13, Method: Composition-based stats.
Identities = 38/98 (38%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
Query: 40 GHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNY 99
G IVF + F + +G++R E++GR R+ QGPRT R + IR A++ +P+ L+NY
Sbjct: 211 GPRIVFVNDAFERRTGYTREEVLGRTPRLLQGPRTQRAELERIRAALQSWQPVRAELINY 270
Query: 100 KKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
KD FW+ + + GR TH+VAV+ I RK
Sbjct: 271 TKDRQEFWLDLDI-VPIADAKGRYTHWVAVERDITQRK 307
Score = 38.9 bits (89), Expect = 3.0, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 262 PDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYPKKKSIYME 321
P +V+ +DAF + TGY R EV+G+ R L G T L ++ A+ + ++ +
Sbjct: 210 PGPRIVFVNDAFERRTGYTREEVLGRTPRLLQGPRTQRAELERIRAALQSWQPVRAELIN 269
Query: 322 YVR 324
Y +
Sbjct: 270 YTK 272
>gi|302845961|ref|XP_002954518.1| hypothetical protein VOLCADRAFT_76302 [Volvox carteri f.
nagariensis]
gi|300260190|gb|EFJ44411.1| hypothetical protein VOLCADRAFT_76302 [Volvox carteri f.
nagariensis]
Length = 224
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 63/115 (54%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++ + S T++DP G+P+ + S GFL M+G++ E +GRN + Q + + T +
Sbjct: 91 AMESILSSLTVSDPHEEGNPLCYVSPGFLSMTGYNEDECLGRNCKFLQDGKLDPSTHEAL 150
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
R AI E R V + N++K G PF L + VFG++ HFV V + R+
Sbjct: 151 RSAISERRFATVEVTNFRKGGRPFQNLLSLLPVFGEDGASLLHFVGVHCDLDERR 205
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 231 CSLP----GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVG 286
CSLP SL ++ I S + DPH P+ Y S FL +TGY+ +E +G
Sbjct: 72 CSLPPKENSFTLEDESLSAAMESILSSLTVSDPHEEGNPLCYVSPGFLSMTGYNEDECLG 131
Query: 287 QNCRFLNGVDTDTTVLYQVSIAIS 310
+NC+FL D + + AIS
Sbjct: 132 RNCKFLQDGKLDPSTHEALRSAIS 155
>gi|163848652|ref|YP_001636696.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
gi|222526588|ref|YP_002571059.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
gi|163669941|gb|ABY36307.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
gi|222450467|gb|ACM54733.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
Length = 915
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 57/96 (59%), Gaps = 1/96 (1%)
Query: 41 HPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYK 100
+PI F +R F ++G++ E+IGR+ QGP T++ + I EAI RP+ LLNY+
Sbjct: 56 YPITFVNRAFCTITGYAPEEVIGRHCLFLQGPGTDQAAVTRICEAIAAARPVHERLLNYR 115
Query: 101 KDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
KDG PFW +S V + GR T F+ +Q + ++
Sbjct: 116 KDGQPFWSQIAISPV-RDDQGRVTAFIGLQTDVTAQ 150
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
S V++ PD P+ + + AF +TGY EV+G++C FL G TD + ++ AI+
Sbjct: 45 SGVIVADAQPDYPITFVNRAFCTITGYAPEEVIGRHCLFLQGPGTDQAAVTRICEAIA 102
>gi|291566707|dbj|BAI88979.1| two-component response regulator [Arthrospira platensis NIES-39]
Length = 501
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 73/135 (54%), Gaps = 1/135 (0%)
Query: 3 SQLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEII 62
SQ+ L ++ + + +A+ + ITDP+ +PI++ + GF +++G+ EI+
Sbjct: 151 SQIYLHDRQVAEATSKLLEKAIAATQNGVVITDPNQPDNPIIYVNFGFERLTGYPAHEIL 210
Query: 63 GRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGR 122
G N R QG ++ + +IR+AI E V L NY++DGT FW +S V E G
Sbjct: 211 GSNCRFLQGNERDQPALDDIRQAIAEAEECRVILKNYRRDGTMFWNELFISPV-RNEQGE 269
Query: 123 ATHFVAVQVPIVSRK 137
T+F+ +Q + RK
Sbjct: 270 LTNFIGIQTDVTERK 284
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S L ++ + V+ DP+ PD P++Y + F +LTGY +E++G NCRFL G + D
Sbjct: 165 SKLLEKAIAATQNGVVITDPNQPDNPIIYVNFGFERLTGYPAHEILGSNCRFLQGNERDQ 224
Query: 300 TVLYQVSIAISPYPKKKSIYMEYVR 324
L + AI+ + + I Y R
Sbjct: 225 PALDDIRQAIAEAEECRVILKNYRR 249
>gi|218531536|ref|YP_002422352.1| signal transduction histidine kinase [Methylobacterium extorquens
CM4]
gi|218523839|gb|ACK84424.1| signal transduction histidine kinase [Methylobacterium extorquens
CM4]
Length = 354
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 62/110 (56%), Gaps = 1/110 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+ ITDP +PI++A+ FL+++G++R E+ GRN R QGP T+ + IR AI E
Sbjct: 35 AMIITDPRRLDNPIIYANDAFLRLTGYTRLEVTGRNCRFLQGPGTDFDAVARIRAAIDAE 94
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
R + LLNY+KDG+ F +S V EDG + A Q + R +
Sbjct: 95 RDVHEELLNYRKDGSTFHNALYISPVH-DEDGTLLFYFASQFDVSDRHAL 143
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 40/59 (67%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ + ++ DP D P++YA+DAFL+LTGY R EV G+NCRFL G TD + ++ AI
Sbjct: 33 RMAMIITDPRRLDNPIIYANDAFLRLTGYTRLEVTGRNCRFLQGPGTDFDAVARIRAAI 91
>gi|255945463|ref|XP_002563499.1| Pc20g10050 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211588234|emb|CAP86334.1| Pc20g10050 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 667
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 74/128 (57%), Gaps = 5/128 (3%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
EAL E+ F +TDPS +PI+FAS F + + + ++GRN R QGP+TN ++
Sbjct: 342 EALAEV---FCLTDPSRPDNPIIFASEEFHRNTQYGMDYVLGRNCRFLQGPKTNPNSVRR 398
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
IREA++ R LLNY++DG+PF L ++S + G+ +F+ Q+ VSR M
Sbjct: 399 IREALKAGRYHSELLLNYRRDGSPFMNLLEISPLCDNR-GKLRYFIGAQI-DVSRLVMEG 456
Query: 142 SGMSYSED 149
+ M +D
Sbjct: 457 AQMESLQD 464
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 7/122 (5%)
Query: 204 AATAIDNILSVLTHYSQLTGRLVCGK-RCSLPGMGFISSSLYISLGRIKQSFVLIDPHLP 262
A TA + + + Y + G+LV + R +LP + + + F L DP P
Sbjct: 303 ALTAEELPAFITSTYINIAGKLVEERVRGTLP------DKFQGTAEALAEVFCLTDPSRP 356
Query: 263 DMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYPKKKSIYMEY 322
D P+++AS+ F + T Y + V+G+NCRFL G T+ + ++ A+ + + Y
Sbjct: 357 DNPIIFASEEFHRNTQYGMDYVLGRNCRFLQGPKTNPNSVRRIREALKAGRYHSELLLNY 416
Query: 323 VR 324
R
Sbjct: 417 RR 418
>gi|254562456|ref|YP_003069551.1| histidine kinase [Methylobacterium extorquens DM4]
gi|254269734|emb|CAX25706.1| Putative histidine kinase; putative HK, ATPase and sensory PAS
domain [Methylobacterium extorquens DM4]
Length = 354
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 62/110 (56%), Gaps = 1/110 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+ ITDP +PI++A+ FL+++G++R E+ GRN R QGP T+ + IR AI E
Sbjct: 35 AMIITDPRRLDNPIIYANDAFLRLTGYTRLEVTGRNCRFLQGPGTDFDAVARIRAAIDAE 94
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
R + LLNY+KDG+ F +S V EDG + A Q + R +
Sbjct: 95 RDVHEELLNYRKDGSTFHNALYISPVH-DEDGTLLFYFASQFDVSERHAL 143
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 40/59 (67%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ + ++ DP D P++YA+DAFL+LTGY R EV G+NCRFL G TD + ++ AI
Sbjct: 33 RMAMIITDPRRLDNPIIYANDAFLRLTGYTRLEVTGRNCRFLQGPGTDFDAVARIRAAI 91
>gi|85373778|ref|YP_457840.1| sensor histidine kinase [Erythrobacter litoralis HTCC2594]
gi|84786861|gb|ABC63043.1| sensor histidine kinase [Erythrobacter litoralis HTCC2594]
Length = 225
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 73/130 (56%), Gaps = 3/130 (2%)
Query: 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRT 78
WV + ++ P + ++DP ++ +P++ ++ F ++G+S E +GRN R G T
Sbjct: 31 WVLDLIEASPIASVVSDPRLADNPLIAINQAFTDLTGYSEEECVGRNCRFLAGSGTEPWL 90
Query: 79 IMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
+IR+ +RE +P+ V +LNYKKDGTPF ++ ++ +D +F+ QV + +
Sbjct: 91 TDKIRQGVREHKPVLVEILNYKKDGTPFRNAVLVAPIY-DDDDELLYFLGSQVEVDDDQP 149
Query: 139 MRNSGMSYSE 148
N GM+ E
Sbjct: 150 --NMGMARRE 157
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 28/44 (63%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
V+ DP L D P++ + AF LTGY E VG+NCRFL G T+
Sbjct: 44 VVSDPRLADNPLIAINQAFTDLTGYSEEECVGRNCRFLAGSGTE 87
>gi|357976441|ref|ZP_09140412.1| LuxR family transcriptional regulator [Sphingomonas sp. KC8]
Length = 191
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 64/110 (58%), Gaps = 1/110 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
+D + I++P + +PI+ + F ++G+ R EIIGRN R GPRT EI
Sbjct: 2 IDNSAVAAVISNPRLPDNPIIECNAAFESLTGYRRDEIIGRNCRFLAGPRTEPGLTAEIV 61
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
A+RE+RP+ V +LNYKKDGTPF ++ +F +G +F+ Q+ +
Sbjct: 62 SAVREKRPVLVEILNYKKDGTPFRNAVLVAPIFDG-NGDLEYFLGSQMEV 110
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 44/69 (63%), Gaps = 3/69 (4%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPY 312
+ V+ +P LPD P++ + AF LTGY R+E++G+NCRFL G T+ + ++ +S
Sbjct: 8 AAVISNPRLPDNPIIECNAAFESLTGYRRDEIIGRNCRFLAGPRTEPGLTAEI---VSAV 64
Query: 313 PKKKSIYME 321
+K+ + +E
Sbjct: 65 REKRPVLVE 73
>gi|163852695|ref|YP_001640738.1| PAS sensor protein [Methylobacterium extorquens PA1]
gi|163664300|gb|ABY31667.1| PAS sensor protein [Methylobacterium extorquens PA1]
Length = 354
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 62/110 (56%), Gaps = 1/110 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+ ITDP +PI++A+ FL+++G++R E+ GRN R QGP T+ + IR AI E
Sbjct: 35 AMIITDPRRLDNPIIYANDAFLRLTGYTRLEVTGRNCRFLQGPGTDFDAVARIRAAIDAE 94
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
R + LLNY+KDG+ F +S V EDG + A Q + R +
Sbjct: 95 RDVHEELLNYRKDGSTFHNALYISPVH-DEDGTLLFYFASQFDVSDRHAL 143
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 40/59 (67%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ + ++ DP D P++YA+DAFL+LTGY R EV G+NCRFL G TD + ++ AI
Sbjct: 33 RMAMIITDPRRLDNPIIYANDAFLRLTGYTRLEVTGRNCRFLQGPGTDFDAVARIRAAI 91
>gi|389816243|ref|ZP_10207406.1| blue-light photoreceptor [Planococcus antarcticus DSM 14505]
gi|388465236|gb|EIM07555.1| blue-light photoreceptor [Planococcus antarcticus DSM 14505]
Length = 280
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 53/75 (70%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PI++ ++ F++M+G++R E++GRN R QGP T + I ++++AI E +
Sbjct: 40 VTDPAQPDNPIIYTNKTFIEMTGYTRGEVVGRNCRFLQGPGTAKEDIEKMKKAIANEEKV 99
Query: 93 EVNLLNYKKDGTPFW 107
V + NY+KD +PFW
Sbjct: 100 IVTVQNYRKDDSPFW 114
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYPK 314
++ DP PD P++Y + F+++TGY R EVVG+NCRFL G T + ++ AI+ K
Sbjct: 39 IVTDPAQPDNPIIYTNKTFIEMTGYTRGEVVGRNCRFLQGPGTAKEDIEKMKKAIANEEK 98
>gi|340780976|ref|YP_004747583.1| PAS/PAC and GAF sensor-containing diguanylate
cyclase/phosphodiesterase [Acidithiobacillus caldus
SM-1]
gi|340555129|gb|AEK56883.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(s) [Acidithiobacillus caldus SM-1]
Length = 913
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 74/133 (55%), Gaps = 8/133 (6%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL + + +TD + +V+A+ FL++SG+ A+I+G+N R QGP T+ T +
Sbjct: 133 ALRAIDEGVVLTD---AEQRVVYANPAFLRLSGYELADILGKNCRFLQGPDTDPATRQSL 189
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV----SRKH 138
+A+ E R ++LNY++DGTPFW +S V + G THFV+VQ + + +
Sbjct: 190 HDALAEGRVFHGDILNYRRDGTPFWNALNISPVRDAQ-GHITHFVSVQRDVTLSRRTEQE 248
Query: 139 MRNSGMSYSEDGG 151
+R S ++ G
Sbjct: 249 LRLSAQAFETQEG 261
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
+L I + VL D + +VYA+ AFL+L+GY+ +++G+NCRFL G DTD +
Sbjct: 133 ALRAIDEGVVLTDA---EQRVVYANPAFLRLSGYELADILGKNCRFLQGPDTDPATRQSL 189
Query: 306 SIAIS 310
A++
Sbjct: 190 HDALA 194
>gi|392307758|ref|ZP_10270292.1| sensor protein [Pseudoalteromonas citrea NCIMB 1889]
Length = 1105
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 65/115 (56%), Gaps = 2/115 (1%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+A++ I+D + HP+VF + F +++G+ + ++G+N R QG T++ + E
Sbjct: 437 QAIESCNVGICISDATKDEHPLVFINSAFTRITGYDK-RVLGKNCRFLQGKDTSKDAVAE 495
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
IR A+ + + V +LNYK DGT FW ++S VF E G T FV +Q I R
Sbjct: 496 IRSALSQRKKHRVEILNYKADGTAFWNSLQISPVF-DEGGALTAFVGIQQDISDR 549
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 258 DPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYPKKKS 317
D + P+V+ + AF ++TGYD+ V+G+NCRFL G DT + ++ A+S K +
Sbjct: 450 DATKDEHPLVFINSAFTRITGYDK-RVLGKNCRFLQGKDTSKDAVAEIRSALSQRKKHRV 508
Query: 318 IYMEY 322
+ Y
Sbjct: 509 EILNY 513
>gi|440683682|ref|YP_007158477.1| multi-sensor signal transduction histidine kinase [Anabaena
cylindrica PCC 7122]
gi|428680801|gb|AFZ59567.1| multi-sensor signal transduction histidine kinase [Anabaena
cylindrica PCC 7122]
Length = 793
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 67/112 (59%), Gaps = 2/112 (1%)
Query: 32 TITDP-SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
T +P + G IV+ + F +M+G++ AEI+G+ R+ QG +T R + +IR ++ +
Sbjct: 277 TAAEPIDLPGPKIVYVNPAFTQMTGYTSAEILGKTPRILQGEKTERAALDKIRANLQTWQ 336
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
P++V ++NY+KDG+ FW+ + + E G TH++A+Q I RK +
Sbjct: 337 PVQVEMINYRKDGSDFWVELNI-IPVTDERGWFTHWIAIQRDITDRKQAETT 387
>gi|403166865|ref|XP_003326736.2| hypothetical protein PGTG_07714 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375166744|gb|EFP82317.2| hypothetical protein PGTG_07714 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 669
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 69/124 (55%), Gaps = 3/124 (2%)
Query: 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
E L DSF +T+P + +P+V S F +G R IIG N R QGP T+ ++I
Sbjct: 353 EETCQGLGDSFVVTNPRLRDNPVVMVSPSFSATTGHDRNSIIGMNCRFLQGPGTSPQSIQ 412
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140
+R+A+++ P LLNYK DGTPF+ L + +F E G ++++ Q+ + +R
Sbjct: 413 RLRQALKQGLPCVELLLNYKADGTPFYCLLSIIPLFD-EKGFLSYYIGGQINVTD--ELR 469
Query: 141 NSGM 144
N+ +
Sbjct: 470 NNQI 473
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
SFV+ +P L D P+V S +F TG+DRN ++G NCRFL G T + ++ A+
Sbjct: 362 SFVVTNPRLRDNPVVMVSPSFSATTGHDRNSIIGMNCRFLQGPGTSPQSIQRLRQAL 418
>gi|85373799|ref|YP_457861.1| sensory box histidine kinase [Erythrobacter litoralis HTCC2594]
gi|123005050|sp|Q2NB77.1|LVHK2_ERYLH RecName: Full=Blue-light-activated histidine kinase 2; AltName:
Full=EL346-LOV-histidine kinase; Short=EL346-LOV-HK
gi|84786882|gb|ABC63064.1| sensory box histidine kinase [Erythrobacter litoralis HTCC2594]
Length = 346
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 61/110 (55%), Gaps = 1/110 (0%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
EA LP S TI D S P+++ +R F +M+G+SR+ ++GRN R QG +T+ +
Sbjct: 11 EAWGRLPFSLTIADISQDDEPLIYVNRAFEQMTGYSRSSVVGRNCRFLQGEKTDPGAVER 70
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+ +AIR +E + NY+ DG FW M +D + +FV +QV
Sbjct: 71 LAKAIRNCEEVEETIYNYRADGEGFWNHLLMG-PLEDQDEKCRYFVGIQV 119
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 40/64 (62%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
+ GR+ S + D D P++Y + AF ++TGY R+ VVG+NCRFL G TD + ++
Sbjct: 12 AWGRLPFSLTIADISQDDEPLIYVNRAFEQMTGYSRSSVVGRNCRFLQGEKTDPGAVERL 71
Query: 306 SIAI 309
+ AI
Sbjct: 72 AKAI 75
>gi|115401564|ref|XP_001216370.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114190311|gb|EAU32011.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 574
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 65/109 (59%), Gaps = 1/109 (0%)
Query: 25 DELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIRE 84
D L + F +TDPS +PI+FAS F + + + ++GRN R QGP+TN+ ++ IRE
Sbjct: 262 DGLAEVFCLTDPSRPDNPIIFASEEFHRTTQYGMDYVLGRNCRFLQGPKTNKNSVRRIRE 321
Query: 85 AIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
AI++ R LNY++DG+PF L + + + G+ +F+ Q+ +
Sbjct: 322 AIQDGRHHSELFLNYRRDGSPFMNLLQCAPLCDSH-GQIRYFIGAQIDV 369
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ + F L DP PD P+++AS+ F + T Y + V+G+NCRFL G T+ + ++ AI
Sbjct: 264 LAEVFCLTDPSRPDNPIIFASEEFHRTTQYGMDYVLGRNCRFLQGPKTNKNSVRRIREAI 323
Query: 310 SPYPKKKSIYMEYVR 324
+++ Y R
Sbjct: 324 QDGRHHSELFLNYRR 338
>gi|399909367|ref|ZP_10777919.1| sensory box/FOG: EAL domain/GGDEF domain containing protein
[Halomonas sp. KM-1]
Length = 1157
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 63/119 (52%), Gaps = 2/119 (1%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88
+ ITD S PI + + FL ++G+ E++GRN RM QG T + +R + E
Sbjct: 606 NGIVITDASQHDLPISYVNEAFLALTGYREEEVLGRNCRMLQGVETEPDAVAWLRRCVVE 665
Query: 89 ERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYS 147
R V LLNY+KDG+ FW +S V DG THFV ++ VS +H +++S
Sbjct: 666 RRDCHVTLLNYRKDGSTFWNALYVSPVL-DGDGGVTHFVG-ELRDVSERHAYEERLAHS 722
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 31/45 (68%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
V+ D D+P+ Y ++AFL LTGY EV+G+NCR L GV+T+
Sbjct: 608 IVITDASQHDLPISYVNEAFLALTGYREEEVLGRNCRMLQGVETE 652
>gi|448495827|ref|ZP_21610218.1| signal-transducing histidine kinase/response regulator [Halorubrum
californiensis DSM 19288]
gi|445687586|gb|ELZ39867.1| signal-transducing histidine kinase/response regulator [Halorubrum
californiensis DSM 19288]
Length = 683
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 1/119 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +A+D T+ DPS P+V+ + F +M+G+ E +GRN R QG TN +
Sbjct: 79 LQQAIDGANVPITLADPSQEDDPLVYVNDAFEEMTGYPPNETLGRNCRFLQGEDTNLEKV 138
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
+RE I E + V+L NY+KDGT FW ++ ++ +D ++ Q + RK
Sbjct: 139 ATLRETIDSEESVTVSLRNYRKDGTEFWNRVTVTPIY-DDDDELVRYLGTQQDVTGRKE 196
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 7/60 (11%)
Query: 246 SLGRIKQSF-------VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
L R++Q+ L DP D P+VY +DAF ++TGY NE +G+NCRFL G DT+
Sbjct: 75 ELSRLQQAIDGANVPITLADPSQEDDPLVYVNDAFEEMTGYPPNETLGRNCRFLQGEDTN 134
>gi|448474944|ref|ZP_21602709.1| histidine kinase [Halorubrum aidingense JCM 13560]
gi|445816936|gb|EMA66818.1| histidine kinase [Halorubrum aidingense JCM 13560]
Length = 522
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 64/115 (55%), Gaps = 2/115 (1%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P TI + +P+V+A+ F ++G+ EI G + R QG T+ T +
Sbjct: 168 AMDEAPVGITIAESGDGENPLVYANAEFEALTGYG-PEIFGTDCRFLQGEETDPDTRATL 226
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
REAI ERP+ V++LNY+++G FW ++ + DG TH+V Q I RK
Sbjct: 227 REAIDAERPVSVDILNYRRNGQKFWNRLTVAPIRDG-DGTVTHYVGFQTDITDRK 280
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 265 PMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
P+VYA+ F LTGY E+ G +CRFL G +TD + AI
Sbjct: 187 PLVYANAEFEALTGYG-PEIFGTDCRFLQGEETDPDTRATLREAI 230
>gi|421857430|ref|ZP_16289766.1| hypothetical protein ACRAD_51_00370 [Acinetobacter radioresistens
DSM 6976 = NBRC 102413]
gi|403187158|dbj|GAB75967.1| hypothetical protein ACRAD_51_00370 [Acinetobacter radioresistens
DSM 6976 = NBRC 102413]
Length = 855
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 28 PDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIR 87
P+ ITD + + IV+ + FL M+G++ +++G+ QGP T I ++ A++
Sbjct: 309 PNGIIITDAT-AERKIVYVNPAFLHMTGYTEEDVMGKTCHFLQGPETEAEKIALVQRALK 367
Query: 88 EERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
E + I+V + NY+KDG+ FW + VF E GR THF+ +Q I ++
Sbjct: 368 EHKEIQVTVKNYRKDGSWFWNRLMLGPVF-DEAGRCTHFLGIQEDITQQR 416
Score = 40.8 bits (94), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYPK 314
++I + +VY + AFL +TGY +V+G+ C FL G +T+ + V A+ + +
Sbjct: 312 IIITDATAERKIVYVNPAFLHMTGYTEEDVMGKTCHFLQGPETEAEKIALVQRALKEHKE 371
>gi|344943449|ref|ZP_08782736.1| putative signal transduction histidine kinase [Methylobacter
tundripaludum SV96]
gi|344260736|gb|EGW21008.1| putative signal transduction histidine kinase [Methylobacter
tundripaludum SV96]
Length = 738
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 71/123 (57%), Gaps = 1/123 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ A+D + ITD + + I++A++ FL+M+G+S E++G N R+ Q +++ I
Sbjct: 267 MQHAIDSSSNGIVITDLGDADYAIIYANKAFLRMTGYSLQELLGHNCRIMQNNDSDQEDI 326
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
E+R A++ +R L NY+KDG+ FW +S + ++ GR TH+V V + R M
Sbjct: 327 HELRAALQSKRDAHAILRNYRKDGSLFWNEIYISPIQDQQ-GRITHYVGVLNDVTHRVEM 385
Query: 140 RNS 142
++
Sbjct: 386 EDA 388
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 239 ISSSLYISLGRIKQS---FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGV 295
+ LY+ I S V+ D D ++YA+ AFL++TGY E++G NCR +
Sbjct: 260 VEEKLYLMQHAIDSSSNGIVITDLGDADYAIIYANKAFLRMTGYSLQELLGHNCRIMQNN 319
Query: 296 DTDTTVLYQVSIAISPYPKKKSIYMEY 322
D+D ++++ A+ +I Y
Sbjct: 320 DSDQEDIHELRAALQSKRDAHAILRNY 346
>gi|119486862|ref|ZP_01620837.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
gi|119456155|gb|EAW37288.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
Length = 1781
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88
+ + D + HPI+F + F K++G+S +EIIG N R QG N+ + +RE ++
Sbjct: 763 NGIVLADARLEDHPIIFVNPAFEKITGYSASEIIGENTRFLQGTDNNQPELERLRETLKN 822
Query: 89 ERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+ V L NY+KDG+ FW +S ++ ++ G TH++ +Q + K
Sbjct: 823 QESCTVILRNYRKDGSLFWNELNLSPIYDQQ-GNLTHYLGIQNDVTESK 870
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
VL D L D P+++ + AF K+TGY +E++G+N RFL G D +
Sbjct: 765 IVLADARLEDHPIIFVNPAFEKITGYSASEIIGENTRFLQGTDNN 809
>gi|428318045|ref|YP_007115927.1| multi-sensor signal transduction histidine kinase [Oscillatoria
nigro-viridis PCC 7112]
gi|428241725|gb|AFZ07511.1| multi-sensor signal transduction histidine kinase [Oscillatoria
nigro-viridis PCC 7112]
Length = 1145
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 73/124 (58%), Gaps = 6/124 (4%)
Query: 29 DSFTITDPSISGHP---IVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+ P I++ + F +M+G++ E++G+ R+ QG +T+R ++ IR A
Sbjct: 645 DAVLITEAEPIEEPGPRILYVNPAFTRMTGYTLEEVVGKTPRILQGKKTDRASLARIRTA 704
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATHFVAVQVPIVSRKHMRNSGM 144
++ +P+ V+ +NY+KDGT FW+ +MS+V ++G TH+V+V I RK +
Sbjct: 705 LKSWQPLRVDTINYRKDGTEFWV--EMSIVPIADKNGEFTHWVSVHRDISDRKQAEAALQ 762
Query: 145 SYSE 148
+E
Sbjct: 763 QLNE 766
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 262 PDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPY 312
P ++Y + AF ++TGY EVVG+ R L G TD L ++ A+ +
Sbjct: 658 PGPRILYVNPAFTRMTGYTLEEVVGKTPRILQGKKTDRASLARIRTALKSW 708
>gi|294499816|ref|YP_003563516.1| Blue-light photoreceptor [Bacillus megaterium QM B1551]
gi|294349753|gb|ADE70082.1| Blue-light photoreceptor [Bacillus megaterium QM B1551]
Length = 260
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+++AL +TDPS+ +PI++ ++GF M+G+ E++G N R QGP TN +
Sbjct: 14 LNKALHSSQSGIIVTDPSLPDNPIIYLNQGFSLMTGYKEEEVLGENCRFLQGPLTNPHHV 73
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
EIR AI + + V L+NY+KDG+ F + + +E+ + +F+ VQ
Sbjct: 74 DEIRSAISRNQSVSVTLVNYRKDGSFFHNQLTIDPTYIEEEDKY-YFIGVQ 123
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTT 300
S L +L + ++ DP LPD P++Y + F +TGY EV+G+NCRFL G T+
Sbjct: 12 SILNKALHSSQSGIIVTDPSLPDNPIIYLNQGFSLMTGYKEEEVLGENCRFLQGPLTNPH 71
Query: 301 VLYQVSIAIS 310
+ ++ AIS
Sbjct: 72 HVDEIRSAIS 81
>gi|297624984|ref|YP_003706418.1| PAS/PAC sensor signal transduction histidine kinase [Truepera
radiovictrix DSM 17093]
gi|297166164|gb|ADI15875.1| PAS/PAC sensor signal transduction histidine kinase [Truepera
radiovictrix DSM 17093]
Length = 465
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 65/111 (58%), Gaps = 2/111 (1%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ EA+ + ITDP + +PI++ +RGF +++G++R E++GRN R QG T++ +
Sbjct: 10 LREAVQAANNVVLITDPRLPDNPIIYVNRGFERLTGYARDEVLGRNCRFLQGRDTDQAAL 69
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
+R AI + I V L NY+KDG FW ++ ++ G +F+ VQ
Sbjct: 70 PALRAAIARGQGIRVELRNYRKDGAMFWNELHITPIW--RAGSLVYFLGVQ 118
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 71/128 (55%), Gaps = 3/128 (2%)
Query: 22 EALDELPDSFTITDPSIS--GHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+AL+ ++ +T+ ++ G I++ +R F M+G++ E++G+ RMFQGPRT+R +
Sbjct: 136 QALEHANEAVIVTEAALERPGPRILYVNRAFSAMTGYAPEEVLGKTPRMFQGPRTSRAVL 195
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
+R + + +NY+KDG+PF + + ++ + G TH+V+ Q + R+ +
Sbjct: 196 NRMRRRLGRGGVFQGETINYRKDGSPFILAWHVAPIR-DALGSITHWVSTQRDVTERRLL 254
Query: 140 RNSGMSYS 147
+ S
Sbjct: 255 ERQALDIS 262
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 39/56 (69%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
++ DP LPD P++Y + F +LTGY R+EV+G+NCRFL G DTD L + AI+
Sbjct: 22 LITDPRLPDNPIIYVNRGFERLTGYARDEVLGRNCRFLQGRDTDQAALPALRAAIA 77
>gi|409396613|ref|ZP_11247593.1| PAS/PAC/GGDEF-domain-containing protein [Pseudomonas sp. Chol1]
gi|409118795|gb|EKM95186.1| PAS/PAC/GGDEF-domain-containing protein [Pseudomonas sp. Chol1]
Length = 421
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 71/111 (63%), Gaps = 3/111 (2%)
Query: 22 EALDELPDSFTITD--PSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+A+++ +S ITD P+ G I++A+ F +SG+S E++G+ R+ QGP T+R +
Sbjct: 15 QAVEQAFNSVLITDAQPAPHGPRILYANAAFCALSGYSAEELVGQTPRILQGPLTDRDVL 74
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
E+R+ +R+ R + +NY+KDG P+W+ + +S + + G TH+V+VQ
Sbjct: 75 DELRQCLRDGRFFHGSTVNYRKDGEPYWVEWNISPIRDAQ-GAVTHYVSVQ 124
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 4/133 (3%)
Query: 4 QLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIG 63
Q G E + + EAL D+ ITD + I FA+ F M+G+S AE++G
Sbjct: 124 QRGFSELVAAQNTSQLLFEALAVSHDAVLITDENGV---IEFANPAFEAMTGYSVAEVLG 180
Query: 64 RNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRA 123
R + + + E++R +P + ++G F +S V G++D R
Sbjct: 181 RTPAFLRSGEHDDAFYASLYESLRAGQPFHATFADRHRNGHIFHADQTISPVRGRDDNR- 239
Query: 124 THFVAVQVPIVSR 136
THFV++ + +R
Sbjct: 240 THFVSIIRDLTAR 252
>gi|171910825|ref|ZP_02926295.1| two-component hybrid sensor and regulator [Verrucomicrobium
spinosum DSM 4136]
Length = 772
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 73/139 (52%), Gaps = 16/139 (11%)
Query: 2 DSQLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHP---IVFASRGFLKMSGFSR 58
D++LGL+E A+ L D +T+ P IVFA+ FL+ +G++
Sbjct: 9 DNKLGLLEA------------AVAHLSDMVLVTEADPIEEPGPRIVFANDAFLRRTGYTA 56
Query: 59 AEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGK 118
+E++GR+ R QGP T+R + ++R + + + V LLNY K G FW+ ++ V
Sbjct: 57 SEVLGRSPRFLQGPSTSREALDQLRAGLVARQLVRVELLNYTKSGDEFWLEIEVVPVLNA 116
Query: 119 EDGRATHFVAVQVPIVSRK 137
G THFVA++ I RK
Sbjct: 117 -SGSCTHFVAIERDITGRK 134
Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%)
Query: 262 PDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
P +V+A+DAFL+ TGY +EV+G++ RFL G T L Q+
Sbjct: 37 PGPRIVFANDAFLRRTGYTASEVLGRSPRFLQGPSTSREALDQL 80
>gi|384046290|ref|YP_005494307.1| Blue-light photoreceptor [Bacillus megaterium WSH-002]
gi|345443981|gb|AEN88998.1| Blue-light photoreceptor [Bacillus megaterium WSH-002]
Length = 260
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+++AL +TDPS+ +PI++ ++GF M+G+ E++G N R QGP TN +
Sbjct: 14 LNKALHSSQTGIIVTDPSLPDNPIIYLNQGFSLMTGYKEEEVLGENCRFLQGPLTNPHHV 73
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
EIR AI + + V L+NY+KDG+ F + + +E+ + +F+ VQ
Sbjct: 74 DEIRSAISRNQSVSVTLVNYRKDGSFFHNQLTIDPTYIEEEDKY-YFIGVQ 123
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTT 300
S L +L + ++ DP LPD P++Y + F +TGY EV+G+NCRFL G T+
Sbjct: 12 SILNKALHSSQTGIIVTDPSLPDNPIIYLNQGFSLMTGYKEEEVLGENCRFLQGPLTNPH 71
Query: 301 VLYQVSIAIS 310
+ ++ AIS
Sbjct: 72 HVDEIRSAIS 81
>gi|56750209|ref|YP_170910.1| two-component response regulator [Synechococcus elongatus PCC 6301]
gi|81300164|ref|YP_400372.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Synechococcus elongatus PCC 7942]
gi|56685168|dbj|BAD78390.1| two-component response regulator [Synechococcus elongatus PCC 6301]
gi|81169045|gb|ABB57385.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Synechococcus elongatus PCC 7942]
Length = 929
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 76/153 (49%), Gaps = 8/153 (5%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ E+L+ + I D P+++ + F +++G+S AE++GRN R+ QG + I
Sbjct: 372 LKESLEASFNGVVIVDAIEPDMPVIYVNPAFERITGYSEAEMLGRNCRILQGNERDSLQI 431
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
EI + + + V + N++KDG PFW +S +F + G THF+ VQ I +K
Sbjct: 432 EEIHRGLSQAENVHVVIRNFRKDGQPFWNDLYISPIFNAQ-GNVTHFIGVQNDITEQKR- 489
Query: 140 RNSGMSYSEDGGGSRLREIVFGSCRREVCSDSL 172
Y E+ S +++ G R V D L
Sbjct: 490 ------YEEELSFSASHDVLTGLPNRAVLEDRL 516
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 4/90 (4%)
Query: 221 LTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYD 280
L+ R + ++ S + + SL S + V++D PDMP++Y + AF ++TGY
Sbjct: 354 LSLRDIAERKASEQQLRLLKESLEASFNGV----VIVDAIEPDMPVIYVNPAFERITGYS 409
Query: 281 RNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
E++G+NCR L G + D+ + ++ +S
Sbjct: 410 EAEMLGRNCRILQGNERDSLQIEEIHRGLS 439
>gi|297592170|gb|ADI46954.1| AMPKR1m [Volvox carteri f. nagariensis]
Length = 969
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 61/114 (53%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
++ + S T++DP G+P+ + S GFL M+G++ E +GRN + Q + + T +R
Sbjct: 105 MENVLSSLTVSDPIEDGNPLCYVSPGFLSMTGYTEEECLGRNCKFLQAGKIDPATHELLR 164
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
AI E R + + NY+KDG PF L + V G HFV VQ + R+
Sbjct: 165 SAITERRFATIEVTNYRKDGRPFQNLLSLLPVLGAGSDSLLHFVGVQCDLDERR 218
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%)
Query: 47 SRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPF 106
S GF ++G+S+++++G + GP T + + ++ + + V +L YK+DGTPF
Sbjct: 294 SPGFTVLTGYSQSDVLGWSLLCLCGPETAEKEMRKLITSQWAHSSVAVKMLCYKRDGTPF 353
Query: 107 WML 109
W L
Sbjct: 354 WAL 356
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG--VDTDTTVLYQVSI 307
+ S + DP P+ Y S FL +TGY E +G+NC+FL +D T L + +I
Sbjct: 108 VLSSLTVSDPIEDGNPLCYVSPGFLSMTGYTEEECLGRNCKFLQAGKIDPATHELLRSAI 167
>gi|333944373|pdb|3P7N|A Chain A, Crystal Structure Of Light Activated Transcription Factor
El222 From Erythrobacter Litoralis
gi|333944374|pdb|3P7N|B Chain B, Crystal Structure Of Light Activated Transcription Factor
El222 From Erythrobacter Litoralis
Length = 258
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 73/130 (56%), Gaps = 3/130 (2%)
Query: 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRT 78
WV + ++ P + ++DP ++ +P++ ++ F ++G+S E +GRN R G T
Sbjct: 64 WVLDLIEASPIASVVSDPRLADNPLIAINQAFTDLTGYSEEECVGRNCRFLAGSGTEPWL 123
Query: 79 IMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
+IR+ +RE +P+ V +LNYKKDGTPF ++ ++ +D +F+ QV + +
Sbjct: 124 TDKIRQGVREHKPVLVEILNYKKDGTPFRNAVLVAPIY-DDDDELLYFLGSQVEVDDDQP 182
Query: 139 MRNSGMSYSE 148
N GM+ E
Sbjct: 183 --NMGMARRE 190
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 28/44 (63%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
V+ DP L D P++ + AF LTGY E VG+NCRFL G T+
Sbjct: 77 VVSDPRLADNPLIAINQAFTDLTGYSEEECVGRNCRFLAGSGTE 120
>gi|148358372|ref|YP_001249579.1| GGDEF/EAL domain-containing sensory box protein [Legionella
pneumophila str. Corby]
gi|296105722|ref|YP_003617422.1| sensory box protein [Legionella pneumophila 2300/99 Alcoy]
gi|148280145|gb|ABQ54233.1| sensory box (GGDEF/EAL domain) [Legionella pneumophila str. Corby]
gi|295647623|gb|ADG23470.1| sensory box protein [Legionella pneumophila 2300/99 Alcoy]
Length = 292
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 74/123 (60%), Gaps = 7/123 (5%)
Query: 22 EALDELPDSFTIT--DP--SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRR 77
+ +DE D IT DP + +G +V+ ++ F K+S + EIIG+ R+ QG TN+
Sbjct: 11 QLIDETSDMVIITKADPLDAPNGPEVVWVNKAFEKISKYKANEIIGQTPRILQGKETNQN 70
Query: 78 TIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKE-DGRATHFVAVQVPIVSR 136
T+ IREA++ + I V LLNY KDGTP+W+ F S+V+ ++ G + A++ I +
Sbjct: 71 TLKMIREAMKAQTSINVELLNYTKDGTPYWINF--SIVYLRDGQGNLCYLGAIERDITAI 128
Query: 137 KHM 139
K++
Sbjct: 129 KNL 131
>gi|428310682|ref|YP_007121659.1| PAS domain-containing protein [Microcoleus sp. PCC 7113]
gi|428252294|gb|AFZ18253.1| PAS domain S-box [Microcoleus sp. PCC 7113]
Length = 1120
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 68/117 (58%), Gaps = 4/117 (3%)
Query: 29 DSFTITDPSISGHP---IVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+ P I++ + F +M+G+++AE++G+ R+ QGP++ + + R A
Sbjct: 185 DAIMITEAEPIEEPGPRIIYVNEAFTRMTGYTQAEVLGKTPRILQGPKSPCAQLDQFRSA 244
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+++ +P V L+NY+KDG+ FW+ V E G TH+VAV+ I RK ++
Sbjct: 245 LKQWQPTVVELINYRKDGSEFWVEISTVPVANAE-GWYTHWVAVERDITERKRAEDT 300
>gi|409991969|ref|ZP_11275188.1| response regulator receiver modulated diguanylate cyclase
[Arthrospira platensis str. Paraca]
gi|409937163|gb|EKN78608.1| response regulator receiver modulated diguanylate cyclase
[Arthrospira platensis str. Paraca]
Length = 502
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 1/135 (0%)
Query: 3 SQLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEII 62
SQ+ L ++ + + +A+ + ITDP+ +PI++ + GF +++G+ EI+
Sbjct: 152 SQIYLHDRQVAEATSKLLEKAIAATQNGVVITDPNQPDNPIIYVNFGFERLTGYPAHEIL 211
Query: 63 GRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGR 122
G N R QG ++ + +IR AI E V L NY++DGT FW +S V E G
Sbjct: 212 GSNCRFLQGNERDQPALDDIRRAIAEAEECRVILKNYRRDGTMFWNELFISPV-RNEQGE 270
Query: 123 ATHFVAVQVPIVSRK 137
T+F+ +Q + RK
Sbjct: 271 LTNFIGIQTDVTERK 285
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S L ++ + V+ DP+ PD P++Y + F +LTGY +E++G NCRFL G + D
Sbjct: 166 SKLLEKAIAATQNGVVITDPNQPDNPIIYVNFGFERLTGYPAHEILGSNCRFLQGNERDQ 225
Query: 300 TVLYQVSIAISPYPKKKSIYMEYVR 324
L + AI+ + + I Y R
Sbjct: 226 PALDDIRRAIAEAEECRVILKNYRR 250
>gi|82702910|ref|YP_412476.1| putative PAS/PAC sensor protein [Nitrosospira multiformis ATCC
25196]
gi|82410975|gb|ABB75084.1| putative PAS/PAC sensor protein [Nitrosospira multiformis ATCC
25196]
Length = 152
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 65/113 (57%), Gaps = 1/113 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
LD + T+ DP + P+V+A++ F M+G+++ E IG+N R QG + +IR
Sbjct: 20 LDSCVNGVTLADPDMEDLPLVYANKAFADMTGYTQEETIGKNCRFLQGTDREQEERSQIR 79
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
AI + PIEV L NY+K+G F+ K+ +F + G+ +++ VQ I ++
Sbjct: 80 TAITNKEPIEVTLRNYRKNGELFYNHLKIIPLFDSQ-GKVLYYLGVQYDITTQ 131
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 40/74 (54%)
Query: 237 GFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296
G I L L L DP + D+P+VYA+ AF +TGY + E +G+NCRFL G D
Sbjct: 10 GLIPRVLCTILDSCVNGVTLADPDMEDLPLVYANKAFADMTGYTQEETIGKNCRFLQGTD 69
Query: 297 TDTTVLYQVSIAIS 310
+ Q+ AI+
Sbjct: 70 REQEERSQIRTAIT 83
>gi|339483714|ref|YP_004695500.1| PAS sensor protein [Nitrosomonas sp. Is79A3]
gi|338805859|gb|AEJ02101.1| PAS sensor protein [Nitrosomonas sp. Is79A3]
Length = 150
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 67/113 (59%), Gaps = 1/113 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
LD + ++ DP P+V+ ++ F ++G++ AE++G+N R QG ++ + ++R
Sbjct: 20 LDSCVNGVSLADPDQEDMPLVYVNKAFETITGYTLAEVVGKNCRFLQGKEHDQAEVDKLR 79
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
EAI+ ++P+EV L NY+K+G F+ MS +F G +F+ VQ+ + +
Sbjct: 80 EAIKNKKPVEVTLHNYRKNGELFYNHLVMSPLFDSH-GNLLYFLGVQLDVTPQ 131
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 38/74 (51%)
Query: 237 GFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296
G I L L L DP DMP+VY + AF +TGY EVVG+NCRFL G +
Sbjct: 10 GLIPQVLSKILDSCVNGVSLADPDQEDMPLVYVNKAFETITGYTLAEVVGKNCRFLQGKE 69
Query: 297 TDTTVLYQVSIAIS 310
D + ++ AI
Sbjct: 70 HDQAEVDKLREAIK 83
>gi|332527012|ref|ZP_08403097.1| PAS/PAC and GAF sensor-containing diguanylate
cyclase/phosphodiesterase [Rubrivivax benzoatilyticus
JA2]
gi|332111447|gb|EGJ11430.1| PAS/PAC and GAF sensor-containing diguanylate
cyclase/phosphodiesterase [Rubrivivax benzoatilyticus
JA2]
Length = 687
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 4/121 (3%)
Query: 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
ALD + ITD + + + F++++G+S E+IG + + QGP T+ T+
Sbjct: 13 QNALDAISQGVLITD---ANRRTTYVNAAFVELTGYSAEEMIGSSCALLQGPGTSADTVQ 69
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140
+R A+ P LLNY+KDGTPFW K+ V +DG T FV VQ + +R+
Sbjct: 70 AMRAALDRGEPFHAELLNYRKDGTPFWNELKIVPVHA-DDGTLTQFVGVQRDVTARRDAM 128
Query: 141 N 141
N
Sbjct: 129 N 129
>gi|390957776|ref|YP_006421533.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
protein [Terriglobus roseus DSM 18391]
gi|390412694|gb|AFL88198.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
protein [Terriglobus roseus DSM 18391]
Length = 525
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 65/113 (57%), Gaps = 1/113 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
D + + TI D + G P+++ + F +M+G+ E++GR+ Q ++ +++IR
Sbjct: 107 FDAISNGITIGDAAQPGAPLLYVNSAFEEMTGYRSNEVLGRDCNFLQRNNRDQPGVVKIR 166
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+A+ E R V L NY+KDGTPFW +S + + GR THFV +Q + +R
Sbjct: 167 KALEERREERVLLRNYRKDGTPFWNELYLSPILDLK-GRLTHFVGIQNDVTAR 218
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 38/73 (52%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
I + D P P++Y + AF ++TGY NEV+G++C FL + D + ++ A+
Sbjct: 110 ISNGITIGDAAQPGAPLLYVNSAFEEMTGYRSNEVLGRDCNFLQRNNRDQPGVVKIRKAL 169
Query: 310 SPYPKKKSIYMEY 322
+++ + Y
Sbjct: 170 EERREERVLLRNY 182
>gi|188579586|ref|YP_001923031.1| signal transduction histidine kinase [Methylobacterium populi
BJ001]
gi|179343084|gb|ACB78496.1| signal transduction histidine kinase [Methylobacterium populi
BJ001]
Length = 901
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 64/118 (54%), Gaps = 1/118 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+D+ +TDP+ PIVF +R FL ++G+ E++GRN R QGP T + EI
Sbjct: 46 AVDKTGLPMILTDPNQDDDPIVFTNRAFLDLTGYGVDEVVGRNCRFLQGPDTEHDHVDEI 105
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140
R A+R+ R + + + N+++DGTPF + VF E GR + Q+ + R
Sbjct: 106 RAALRDNRDLTIEITNHRRDGTPFVNALFIGPVFDGE-GRLRYRFGSQIDVTEAHRNR 162
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 43/67 (64%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L+ ++ + +L DP+ D P+V+ + AFL LTGY +EVVG+NCRFL G DT+ +
Sbjct: 43 LFSAVDKTGLPMILTDPNQDDDPIVFTNRAFLDLTGYGVDEVVGRNCRFLQGPDTEHDHV 102
Query: 303 YQVSIAI 309
++ A+
Sbjct: 103 DEIRAAL 109
>gi|170722401|ref|YP_001750089.1| PAS/PAC sensor-containing methyl-accepting chemotaxis sensory
transducer [Pseudomonas putida W619]
gi|169760404|gb|ACA73720.1| methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
[Pseudomonas putida W619]
Length = 587
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 70/133 (52%), Gaps = 5/133 (3%)
Query: 7 LIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN- 65
+ E+ NR + +E +S ITD + I + +RGF K++G+ E+ G+
Sbjct: 243 ITEEVLRNREFKLLSLVANETDNSIVITDKN---GLIQYVNRGFTKLTGYDSNEVRGKKP 299
Query: 66 GRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATH 125
G + QGP TN T+ I +AIR RPI +LNYKK G +W+ ++ VFG + G
Sbjct: 300 GPLLQGPATNPETVERIADAIRNRRPIYNEILNYKKSGEHYWISLAINPVFG-DQGELAQ 358
Query: 126 FVAVQVPIVSRKH 138
F+++Q I K
Sbjct: 359 FISIQANITQTKE 371
>gi|334121172|ref|ZP_08495246.1| multi-sensor signal transduction histidine kinase [Microcoleus
vaginatus FGP-2]
gi|333455458|gb|EGK84107.1| multi-sensor signal transduction histidine kinase [Microcoleus
vaginatus FGP-2]
Length = 1148
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 69/113 (61%), Gaps = 6/113 (5%)
Query: 29 DSFTITDPSISGHP---IVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+ P I++ + F +M+G++ E++G+ R+ QG +T+R ++ IR A
Sbjct: 648 DAVLITEAEPIHEPGPRILYVNPAFTRMTGYTLEEVVGKTPRILQGQKTDRASLHRIRTA 707
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATHFVAVQVPIVSRK 137
+ +P+ V+ +NY+KDGT FW+ +MS+V E+G TH+V+V I RK
Sbjct: 708 LETWQPVRVDSINYRKDGTEFWV--EMSIVPIADENGEFTHWVSVHRDISDRK 758
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 260 HLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPY 312
H P ++Y + AF ++TGY EVVG+ R L G TD L+++ A+ +
Sbjct: 659 HEPGPRILYVNPAFTRMTGYTLEEVVGKTPRILQGQKTDRASLHRIRTALETW 711
>gi|344942477|ref|ZP_08781764.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
SV96]
gi|344259764|gb|EGW20036.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
SV96]
Length = 1278
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++ S ++ D + G P+++ + F +++G+SR E IGRN R QG T++ + EI
Sbjct: 515 AVEASASSISMVDVNKPGMPLIYVNPAFERITGYSRDEAIGRNPRFLQGKETDQPGVDEI 574
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
R ++E R L NY+K+GTP+W +++ V E GR +HF+ + + R+
Sbjct: 575 RAVLQEGRAGGALLHNYRKNGTPYWNDLRIAPVH-DEQGRLSHFIGIADDVTERR 628
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 33/46 (71%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
S ++D + P MP++Y + AF ++TGY R+E +G+N RFL G +TD
Sbjct: 522 SISMVDVNKPGMPLIYVNPAFERITGYSRDEAIGRNPRFLQGKETD 567
>gi|254410456|ref|ZP_05024235.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196182662|gb|EDX77647.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 2020
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
ITDP++ +PI+F + GF +++G+S E++G+N R QG + + +++ A++ E+
Sbjct: 340 ITDPNVPDNPIIFVNPGFERITGYSAQEVLGKNCRFLQGDNQQQPGLDKLKAALKNEQDC 399
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
V L N +KDGT FW +S + + G+ TH++ +Q I R+
Sbjct: 400 HVILQNTRKDGTRFWNELSISPIRDRH-GKLTHYIGIQTDISERRQ 444
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 30/41 (73%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG 294
++ DP++PD P+++ + F ++TGY EV+G+NCRFL G
Sbjct: 338 ILITDPNVPDNPIIFVNPGFERITGYSAQEVLGKNCRFLQG 378
>gi|456012326|gb|EMF46032.1| sensory box histidine kinase [Planococcus halocryophilus Or1]
Length = 292
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 50/75 (66%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDPS +PI++ ++ F+ M+G+S+ EIIGRN R QG T I ++R AI E +
Sbjct: 55 VTDPSQPDNPIIYTNKTFIDMTGYSQEEIIGRNCRFLQGAGTANEDIEKMRTAIAAEEKV 114
Query: 93 EVNLLNYKKDGTPFW 107
+ + NY+KDG+PFW
Sbjct: 115 VLTIQNYRKDGSPFW 129
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYPK 314
++ DP PD P++Y + F+ +TGY + E++G+NCRFL G T + ++ AI+ K
Sbjct: 54 IVTDPSQPDNPIIYTNKTFIDMTGYSQEEIIGRNCRFLQGAGTANEDIEKMRTAIAAEEK 113
>gi|254505056|ref|ZP_05117207.1| hypothetical protein SADFL11_5096 [Labrenzia alexandrii DFL-11]
gi|222441127|gb|EEE47806.1| hypothetical protein SADFL11_5096 [Labrenzia alexandrii DFL-11]
Length = 124
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 59/104 (56%), Gaps = 1/104 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
S +DP++ +P++F S F + +G++ AE +GRN R QGP TN I IR+ ++ +
Sbjct: 22 SVVFSDPNVPDNPMIFVSDEFERQTGYTSAEAVGRNCRFLQGPETNPFAIEAIRQGLKAQ 81
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+++LNY+KDG PF ++ + DGR F Q P+
Sbjct: 82 TRFTIDILNYRKDGMPFMNRLRIRPIIDG-DGRLIFFAGAQNPV 124
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 10/83 (12%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV------- 305
S V DP++PD PM++ SD F + TGY E VG+NCRFL G +T+ + +
Sbjct: 22 SVVFSDPNVPDNPMIFVSDEFERQTGYTSAEAVGRNCRFLQGPETNPFAIEAIRQGLKAQ 81
Query: 306 ---SIAISPYPKKKSIYMEYVRV 325
+I I Y K +M +R+
Sbjct: 82 TRFTIDILNYRKDGMPFMNRLRI 104
>gi|189202218|ref|XP_001937445.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187984544|gb|EDU50032.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 775
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ EA + L + F +TDPS + +PI+FAS F + + + IGRN R QGP+T+R T+
Sbjct: 341 LREASEGLAEVFCLTDPSRTDNPIIFASEEFHRTTQYGVGYAIGRNCRFLQGPKTSRSTV 400
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+A RE + LLNY++DG+PF L M+ + G +F+ Q+ +
Sbjct: 401 ARFGKAAREGKDHSEVLLNYRRDGSPFMNLLMMAPLLDSR-GNLRYFIGAQIDV 453
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ + F L DP D P+++AS+ F + T Y +G+NCRFL G T + + + A
Sbjct: 348 LAEVFCLTDPSRTDNPIIFASEEFHRTTQYGVGYAIGRNCRFLQGPKTSRSTVARFGKAA 407
Query: 310 SPYPKKKSIYMEYVR 324
+ + Y R
Sbjct: 408 REGKDHSEVLLNYRR 422
>gi|242345219|dbj|BAH80323.1| aureochrome2-like protein [Ochromonas danica]
Length = 360
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 59/104 (56%), Gaps = 1/104 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
SF I++ P+V+AS GFLK++G+ EI+GRN R QGPRT+ + ++ A+ E
Sbjct: 154 SFCISNAISPDMPLVYASPGFLKLTGYEMHEILGRNCRFLQGPRTDPTEVAKVSRALAEG 213
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
R LLNY+KDG FW +S V + GR V +Q +
Sbjct: 214 RDYSTVLLNYRKDGRTFWNQILLSHVKDRA-GRTFFVVGIQTQV 256
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 47/70 (67%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPY 312
SF + + PDMP+VYAS FLKLTGY+ +E++G+NCRFL G TD T + +VS A++
Sbjct: 154 SFCISNAISPDMPLVYASPGFLKLTGYEMHEILGRNCRFLQGPRTDPTEVAKVSRALAEG 213
Query: 313 PKKKSIYMEY 322
++ + Y
Sbjct: 214 RDYSTVLLNY 223
>gi|385334014|ref|YP_005887963.1| protein containing chemotaxis methyl-accepting receptor, signaling,
PAS fold protein [Marinobacter adhaerens HP15]
gi|311697216|gb|ADQ00088.1| protein containing chemotaxis methyl-accepting receptor, signaling,
PAS fold protein [Marinobacter adhaerens HP15]
Length = 541
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 66/114 (57%), Gaps = 5/114 (4%)
Query: 25 DELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN-GRMFQGPRTNRRTIMEIR 83
+E ++ IT P IV+ +RGF +++G+ E++G+N G QGP T+ TI +IR
Sbjct: 213 NETDNAVIITTPD---RKIVYVNRGFTQLTGYGLDEVVGKNPGDFLQGPHTDPETIDQIR 269
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+ +R +P +LNY ++ P+W+ ++ VF E G TH++++Q + K
Sbjct: 270 QKLRHHQPFYDEVLNYDRNQKPYWVSLAINPVF-DESGTLTHYISIQANVTETK 322
Score = 38.9 bits (89), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 262 PDMPMVYASDAFLKLTGYDRNEVVGQN-CRFLNGVDTDTTVLYQV 305
PD +VY + F +LTGY +EVVG+N FL G TD + Q+
Sbjct: 224 PDRKIVYVNRGFTQLTGYGLDEVVGKNPGDFLQGPHTDPETIDQI 268
>gi|17230662|ref|NP_487210.1| hypothetical protein alr3170 [Nostoc sp. PCC 7120]
gi|17132265|dbj|BAB74869.1| alr3170 [Nostoc sp. PCC 7120]
Length = 1021
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 71/121 (58%), Gaps = 3/121 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ + L + + +TD + +PI++ ++ F M+G+S E+IG+N R Q T++ +
Sbjct: 204 MEQVLATISNGIVLTDANQPDNPIIYVNQAFETMTGYSAGEVIGQNCRFLQTNETDQPGL 263
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
E+R A+RE++ V + N++KDGT FW ++ VF + + THF+ VQ I +H+
Sbjct: 264 WELRSALREKKECHVIIKNFRKDGTEFWNELYIAPVFDSCE-QLTHFIGVQNDIT--QHL 320
Query: 140 R 140
+
Sbjct: 321 Q 321
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 247 LGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVS 306
L I VL D + PD P++Y + AF +TGY EV+GQNCRFL +TD L+++
Sbjct: 208 LATISNGIVLTDANQPDNPIIYVNQAFETMTGYSAGEVIGQNCRFLQTNETDQPGLWELR 267
Query: 307 IAI 309
A+
Sbjct: 268 SAL 270
>gi|344204086|ref|YP_004789229.1| multi-sensor signal transduction histidine kinase [Muricauda
ruestringensis DSM 13258]
gi|343956008|gb|AEM71807.1| multi-sensor signal transduction histidine kinase [Muricauda
ruestringensis DSM 13258]
Length = 1920
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 76/150 (50%), Gaps = 19/150 (12%)
Query: 29 DSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ ITD G IV+ +R F +M+G++ EIIGR M +GP+T+R + +
Sbjct: 262 DAVMITDSGPLEEEGPKIVYVNRAFTQMTGYTPEEIIGRTPDMLRGPKTDRNELERFYKT 321
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS-------RKH 138
+ + P EV + NY+K+G+PFW+ S V + GR +H++A+Q + S R
Sbjct: 322 LTKGEPCEVIITNYRKNGSPFWINIAASPVKDAQ-GRVSHYIAIQRDVSSKINAQLERDF 380
Query: 139 MRNSGMSYSEDGGGSRLREIVFGSCRREVC 168
+ ++ E+ GSC +VC
Sbjct: 381 LAKISTTFKENEN--------LGSCLDQVC 402
>gi|395494345|ref|ZP_10425924.1| sensor histidine kinase [Sphingomonas sp. PAMC 26617]
Length = 207
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 28 PDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIR 87
P I+DP + +PIV + GF +++G++ E++GRN R GP T EIR +R
Sbjct: 22 PIPSVISDPRLPDNPIVACNAGFCELTGYTVEEVVGRNCRFLSGPATEPWLTEEIRRGVR 81
Query: 88 EERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135
E RP+ V +LNYK++G PF ++ ++ + D +F+ Q+ I S
Sbjct: 82 EHRPVLVEILNYKRNGHPFRNAVLVAPIYDENDA-LLYFLGSQIEIDS 128
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 31/44 (70%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
V+ DP LPD P+V + F +LTGY EVVG+NCRFL+G T+
Sbjct: 26 VISDPRLPDNPIVACNAGFCELTGYTVEEVVGRNCRFLSGPATE 69
>gi|121716497|ref|XP_001275825.1| conserved hypothetical protein [Aspergillus clavatus NRRL 1]
gi|119403982|gb|EAW14399.1| conserved hypothetical protein [Aspergillus clavatus NRRL 1]
Length = 614
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
Query: 25 DELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIRE 84
D L + F +TDPS +PI+FAS F + + + ++GRN R QGP+TN ++ IRE
Sbjct: 278 DALAEVFCLTDPSRPDNPIIFASEEFHRTTQYGMDYVLGRNCRFLQGPKTNPNSVRRIRE 337
Query: 85 AIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
AI R LNY++DG+PF L + + G+ +F+ Q+ +
Sbjct: 338 AIEAGRHHSELFLNYRRDGSPFMNLLQCA-PLCDSSGKIRYFIGAQIDV 385
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ + F L DP PD P+++AS+ F + T Y + V+G+NCRFL G T+ + ++ AI
Sbjct: 280 LAEVFCLTDPSRPDNPIIFASEEFHRTTQYGMDYVLGRNCRFLQGPKTNPNSVRRIREAI 339
Query: 310 SPYPKKKSIYMEYVR 324
+++ Y R
Sbjct: 340 EAGRHHSELFLNYRR 354
>gi|428210407|ref|YP_007094760.1| multi-sensor signal transduction histidine kinase
[Chroococcidiopsis thermalis PCC 7203]
gi|428012328|gb|AFY90891.1| multi-sensor signal transduction histidine kinase
[Chroococcidiopsis thermalis PCC 7203]
Length = 1046
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 63/99 (63%), Gaps = 1/99 (1%)
Query: 40 GHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNY 99
G IV+ ++ F ++G++ E++GR+ R QG +T++ + IR+A++ ++P++ L+NY
Sbjct: 294 GPRIVYVNQAFTDLTGYTCEEVVGRSPRFLQGAKTDKAALKRIRDALQAKKPVQEELINY 353
Query: 100 KKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
KDG+ FW+ ++ + G+ THFVA+Q I RK
Sbjct: 354 CKDGSEFWVEISITPI-ADAAGQYTHFVAIQRNISDRKQ 391
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 262 PDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYPKKKSIYME 321
P +VY + AF LTGY EVVG++ RFL G TD L ++ A+ KK + E
Sbjct: 293 PGPRIVYVNQAFTDLTGYTCEEVVGRSPRFLQGAKTDKAALKRIRDALQA---KKPVQEE 349
Query: 322 YV 323
+
Sbjct: 350 LI 351
>gi|256821584|ref|YP_003145547.1| PAS/PAC and GAF sensor-containing diguanylate
cyclase/phosphodiesterase [Kangiella koreensis DSM
16069]
gi|256795123|gb|ACV25779.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(s) [Kangiella koreensis DSM 16069]
Length = 887
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 59/104 (56%), Gaps = 1/104 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
I+D P ++ + F +++G+S+ +IIG+N R+ QGP T+++ I A+ ++ I
Sbjct: 353 ISDARADDFPTIYVNPAFERITGYSKEDIIGKNCRILQGPDTDQKVRQAIHNALEQQTEI 412
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+ NYKKDGTPFW +S V D THF+ +Q I R
Sbjct: 413 STIIKNYKKDGTPFWNELLISPVKDDNDN-VTHFIGLQNDITER 455
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYP 313
++ D D P +Y + AF ++TGY + +++G+NCR L G DTD V + A+
Sbjct: 351 LLISDARADDFPTIYVNPAFERITGYSKEDIIGKNCRILQGPDTDQKVRQAIHNALEQQT 410
Query: 314 KKKSIYMEYVR 324
+ +I Y +
Sbjct: 411 EISTIIKNYKK 421
>gi|407797304|ref|ZP_11144249.1| blue-light photoreceptor [Salimicrobium sp. MJ3]
gi|407018367|gb|EKE31094.1| blue-light photoreceptor [Salimicrobium sp. MJ3]
Length = 269
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 65/118 (55%), Gaps = 1/118 (0%)
Query: 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRT 78
++ A+D + I DP P+V+ ++GF +++G+ +++GRN R QG T
Sbjct: 17 FIRAAVDRVGVGVVIADPEQEDTPVVYVNKGFEELTGYEAKDVLGRNCRFLQGEDTESEN 76
Query: 79 IMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+ +IR+A++ + ++V L NY+KDG+ FW ++ VF E FV VQ + R
Sbjct: 77 LDKIRDALKSKENMKVELRNYRKDGSEFWNELQIYTVF-IEKLNQDFFVGVQQDVTKR 133
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 42/71 (59%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
++ R+ V+ DP D P+VY + F +LTGY+ +V+G+NCRFL G DT++ L ++
Sbjct: 21 AVDRVGVGVVIADPEQEDTPVVYVNKGFEELTGYEAKDVLGRNCRFLQGEDTESENLDKI 80
Query: 306 SIAISPYPKKK 316
A+ K
Sbjct: 81 RDALKSKENMK 91
>gi|383645221|ref|ZP_09957627.1| LuxR family transcriptional regulator [Sphingomonas elodea ATCC
31461]
Length = 193
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 63/109 (57%), Gaps = 1/109 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+ +++P + +PI+ + F+ ++G+ R EI+GRN R G +T + +RE+
Sbjct: 11 AAVLSNPRLPDNPIIDCNEAFIALTGYQRDEIVGRNCRFLSGDKTEPWLSEALSAGVREK 70
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
RP+ V +LNYKKDGTPF ++ +FG EDG +F+ Q+ + K
Sbjct: 71 RPVMVEILNYKKDGTPFRNAVLVAPIFG-EDGELEYFLGSQMEVEGPKE 118
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 36/46 (78%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+ VL +P LPD P++ ++AF+ LTGY R+E+VG+NCRFL+G T+
Sbjct: 11 AAVLSNPRLPDNPIIDCNEAFIALTGYQRDEIVGRNCRFLSGDKTE 56
>gi|358056330|dbj|GAA97697.1| hypothetical protein E5Q_04375 [Mixia osmundae IAM 14324]
Length = 670
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 63/109 (57%), Gaps = 1/109 (0%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L D + +T+P + HPIV AS GF ++G++R EI GRN R QGP +++ ++ IR+A+
Sbjct: 312 LGDCWCLTNPRLKDHPIVLASPGFEDLTGYTREEICGRNCRFLQGPSSSQESVGRIRDAL 371
Query: 87 REERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135
+LNY++ G PF+ L + + + G +F+ QV + S
Sbjct: 372 NRGEGCSELILNYRRSGQPFYCLLTI-MPLKSKSGDIVYFLGGQVDVGS 419
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG 294
+ L +P L D P+V AS F LTGY R E+ G+NCRFL G
Sbjct: 316 WCLTNPRLKDHPIVLASPGFEDLTGYTREEICGRNCRFLQG 356
>gi|34495841|ref|NP_900056.1| hypothetical protein CV_0386 [Chromobacterium violaceum ATCC 12472]
gi|34101696|gb|AAQ58064.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
12472]
Length = 296
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 80/145 (55%), Gaps = 8/145 (5%)
Query: 22 EALDELPDSFTITDPS---ISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRT 78
+ +D D+ +T+ + + G IV+ + ++SG+ E++GR+ R+ QGP T+
Sbjct: 10 QIVDHAQDAVMVTEVAPLQLPGPIIVYVNPAMCRLSGYEAGELLGRSPRVLQGPLTDPSA 69
Query: 79 IMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
++++ A+R+ R V LLNY + GTP+W + +F E G +HF A+Q I +R H
Sbjct: 70 LLQLSVALRDGRETTVELLNYHRSGTPYWTRLHLLPLF-DESGELSHFAALQQDITAR-H 127
Query: 139 MRNSG---MSYSEDGGGSRLREIVF 160
+R+ M S++G R++ F
Sbjct: 128 IRSEALYRMVVSDEGSSLFNRQMFF 152
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 260 HLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
LP +VY + A +L+GY+ E++G++ R L G TD + L Q+S+A+
Sbjct: 28 QLPGPIIVYVNPAMCRLSGYEAGELLGRSPRVLQGPLTDPSALLQLSVAL 77
>gi|428172074|gb|EKX40986.1| hypothetical protein GUITHDRAFT_39483, partial [Guillardia theta
CCMP2712]
Length = 98
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
I+D S+ G PIVFAS GF KM+G+ AEI+G + G ++ T+ IREA+ + +
Sbjct: 1 ISDASVPGMPIVFASEGFFKMTGYEPAEILGHSLEKLYGADSDPTTVAMIREAMETHQAV 60
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+LNY+KDG FW + V G ++VA QV
Sbjct: 61 STCILNYRKDGRSFWNHLSLQPV-SDSSGSLRYYVATQV 98
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%)
Query: 258 DPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYPKKKS 317
D +P MP+V+AS+ F K+TGY+ E++G + L G D+D T + + A+ + +
Sbjct: 3 DASVPGMPIVFASEGFFKMTGYEPAEILGHSLEKLYGADSDPTTVAMIREAMETHQAVST 62
Query: 318 IYMEY 322
+ Y
Sbjct: 63 CILNY 67
>gi|358056329|dbj|GAA97696.1| hypothetical protein E5Q_04374 [Mixia osmundae IAM 14324]
Length = 669
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 63/109 (57%), Gaps = 1/109 (0%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L D + +T+P + HPIV AS GF ++G++R EI GRN R QGP +++ ++ IR+A+
Sbjct: 311 LGDCWCLTNPRLKDHPIVLASPGFEDLTGYTREEICGRNCRFLQGPSSSQESVGRIRDAL 370
Query: 87 REERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135
+LNY++ G PF+ L + + + G +F+ QV + S
Sbjct: 371 NRGEGCSELILNYRRSGQPFYCLLTI-MPLKSKSGDIVYFLGGQVDVGS 418
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG 294
+ L +P L D P+V AS F LTGY R E+ G+NCRFL G
Sbjct: 315 WCLTNPRLKDHPIVLASPGFEDLTGYTREEICGRNCRFLQG 355
>gi|402072518|gb|EJT68290.1| hypothetical protein GGTG_14129 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 1036
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 60/105 (57%), Gaps = 1/105 (0%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L D F +TDP +PI++AS GF+ ++G++R +II RN R QG +T+ I + AI
Sbjct: 671 LGDCFCLTDPGKPQNPILWASEGFVAVTGYTRTDIIPRNCRFLQGAQTDPEAIKRLSMAI 730
Query: 87 REERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
E + LLNYKK+ PFW L + ++ E G F+ QV
Sbjct: 731 HERKETVELLLNYKKNKEPFWNLLYCAPLY-DEAGELAFFIGGQV 774
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTV 301
S Y LG F L DP P P+++AS+ F+ +TGY R +++ +NCRFL G TD
Sbjct: 666 SRYQGLG---DCFCLTDPGKPQNPILWASEGFVAVTGYTRTDIIPRNCRFLQGAQTDPEA 722
Query: 302 LYQVSIAISPYPKKKSIYMEYVR 324
+ ++S+AI + + + Y +
Sbjct: 723 IKRLSMAIHERKETVELLLNYKK 745
>gi|168701749|ref|ZP_02734026.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
2246]
Length = 1178
Score = 78.6 bits (192), Expect = 4e-12, Method: Composition-based stats.
Identities = 45/117 (38%), Positives = 64/117 (54%), Gaps = 1/117 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL P I D + HP+V+ + GF +M+G+ AE +GRN R QG T+ + +
Sbjct: 695 ALAAFPQGVAIADATRPDHPLVYVNPGFERMTGYPAAEALGRNCRFLQGKGTDPSAVAAV 754
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
R A+R+ R V LLNY+KDG PFW ++ V G THFVA+Q + K +
Sbjct: 755 RAALRDGRAALVELLNYRKDGKPFWNALTVAPVRDGA-GALTHFVAIQTDVSPLKQL 810
Score = 51.2 bits (121), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 31/55 (56%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTT 300
+L Q + D PD P+VY + F ++TGY E +G+NCRFL G TD +
Sbjct: 695 ALAAFPQGVAIADATRPDHPLVYVNPGFERMTGYPAAEALGRNCRFLQGKGTDPS 749
>gi|408671576|ref|YP_006870460.1| PAS/PAC sensor signal transduction histidine kinase, partial
[Emticicia oligotrophica DSM 17448]
gi|387857473|gb|AFK05569.1| PAS/PAC sensor signal transduction histidine kinase [Emticicia
oligotrophica DSM 17448]
Length = 1215
Score = 78.6 bits (192), Expect = 4e-12, Method: Composition-based stats.
Identities = 38/111 (34%), Positives = 66/111 (59%), Gaps = 4/111 (3%)
Query: 29 DSFTITDPSISGHP---IVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+P P I++A++ F KM+G+ EIIG+ R+ QGP+++ + + + +A
Sbjct: 640 DAILITEPEPFDEPGPKIMYANKAFTKMTGYEVEEIIGKTPRILQGPKSDFKELARLSQA 699
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+R+ EV +NYKK+G FW+ F ++ V E G TH++A+ I +
Sbjct: 700 LRKWESCEVTTINYKKNGEEFWVNFTVTPV-ANEKGWFTHWIAISRDITEK 749
Score = 39.7 bits (91), Expect = 1.8, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 253 SFVLIDPHLPDMP---MVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ ++ +P D P ++YA+ AF K+TGY+ E++G+ R L G +D L ++S A+
Sbjct: 641 AILITEPEPFDEPGPKIMYANKAFTKMTGYEVEEIIGKTPRILQGPKSDFKELARLSQAL 700
Query: 310 SPY 312
+
Sbjct: 701 RKW 703
>gi|440681621|ref|YP_007156416.1| multi-sensor signal transduction histidine kinase [Anabaena
cylindrica PCC 7122]
gi|428678740|gb|AFZ57506.1| multi-sensor signal transduction histidine kinase [Anabaena
cylindrica PCC 7122]
Length = 871
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 84/156 (53%), Gaps = 18/156 (11%)
Query: 40 GHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNY 99
G I++ ++ F +M+G+S +++G+ R+ QGP+T+R + +++ A+ + V ++NY
Sbjct: 407 GPRILYINQAFTRMTGYSSEDVLGKTPRILQGPKTDRVALDQVKNALSRWETVTVEVINY 466
Query: 100 KKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSEDGGGSRLREIV 159
+KDG+ FW+ F + V K G TH++AVQ I RK + + + SE+ R R ++
Sbjct: 467 RKDGSEFWVEFSVVPVADK-TGYYTHWIAVQRDITERKRIEQA-LQRSEE----RFRSLI 520
Query: 160 FGSCRREVCSDSLLDLDRVLALDSDDTGLEIEDSCE 195
+ LD + LD++ T I S E
Sbjct: 521 ENA------------LDVITILDTEGTIQYISPSVE 544
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 255 VLIDPHLP-DMP---MVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
VLI P D P ++Y + AF ++TGY +V+G+ R L G TD L QV A+S
Sbjct: 395 VLITEFQPIDEPGPRILYINQAFTRMTGYSSEDVLGKTPRILQGPKTDRVALDQVKNALS 454
Query: 311 PY 312
+
Sbjct: 455 RW 456
>gi|254410683|ref|ZP_05024462.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196182889|gb|EDX77874.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 483
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 60/104 (57%), Gaps = 1/104 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
I D + P+++ + F +++G+S AE++G N R QG T++ + ++R AI+
Sbjct: 161 IADARLPDMPLIYVNPAFEEITGYSDAEVLGYNCRFLQGKDTSQPAVDQLRAAIKAGENC 220
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
V LLNY+KDGTPFW +S ++ + THFV +Q I R
Sbjct: 221 TVTLLNYRKDGTPFWNELTISPIY-DDHNNLTHFVGIQSDISDR 263
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 36/55 (65%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
V+ D LPDMP++Y + AF ++TGY EV+G NCRFL G DT + Q+ AI
Sbjct: 160 VIADARLPDMPLIYVNPAFEEITGYSDAEVLGYNCRFLQGKDTSQPAVDQLRAAI 214
>gi|323138135|ref|ZP_08073208.1| PAS sensor protein [Methylocystis sp. ATCC 49242]
gi|322396597|gb|EFX99125.1| PAS sensor protein [Methylocystis sp. ATCC 49242]
Length = 150
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 65/112 (58%), Gaps = 1/112 (0%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+ LD + T+ DP + PIV+A++ F M+G+S+ EIIGRN R QG +++ I
Sbjct: 17 QILDSCVNGATLADPDMEDAPIVYANKAFEDMTGYSQEEIIGRNCRFLQGQDSDQEGIGI 76
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+REA+ + +EV L NYKK+G F+ ++ + + G +++ VQ +
Sbjct: 77 LREALSKHEKVEVTLRNYKKNGELFFNKLNITPLLDNK-GNVIYYLGVQYDV 127
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 237 GFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296
G I + L L L DP + D P+VYA+ AF +TGY + E++G+NCRFL G D
Sbjct: 9 GIIPAILTQILDSCVNGATLADPDMEDAPIVYANKAFEDMTGYSQEEIIGRNCRFLQGQD 68
Query: 297 TDTTVLYQVSIAISPYPK 314
+D + + A+S + K
Sbjct: 69 SDQEGIGILREALSKHEK 86
>gi|352105826|ref|ZP_08960990.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Halomonas sp. HAL1]
gi|350598249|gb|EHA14372.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Halomonas sp. HAL1]
Length = 709
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 67/120 (55%), Gaps = 2/120 (1%)
Query: 28 PDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIR 87
P+ + D + P+V+ + F ++G+S E +GRN R QG ++ I EIR AI
Sbjct: 163 PNGVVMADATQPHLPLVYVNSAFTDITGYSAEEALGRNCRFLQGEDSDPMAIEEIRRAIV 222
Query: 88 EERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYS 147
+++ ++V L NY+ DGT FW +S VF G THF+ +Q I +R+ + + ++Y
Sbjct: 223 QQQDVQVLLCNYRFDGTLFWNQLSISPVFNN-SGVCTHFIGIQQDI-TRQREQEARLAYQ 280
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
V+ D P +P+VY + AF +TGY E +G+NCRFL G D+D + ++ AI
Sbjct: 167 VMADATQPHLPLVYVNSAFTDITGYSAEEALGRNCRFLQGEDSDPMAIEEIRRAI 221
>gi|330931902|ref|XP_003303581.1| hypothetical protein PTT_15841 [Pyrenophora teres f. teres 0-1]
gi|311320335|gb|EFQ88319.1| hypothetical protein PTT_15841 [Pyrenophora teres f. teres 0-1]
Length = 777
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ EA + L + F +TDPS + +PI+FAS F + + + IGRN R QGP+T+R T+
Sbjct: 343 LREASEGLAEVFCLTDPSRTDNPIIFASEEFHRTTQYGVGYAIGRNCRFLQGPKTSRSTV 402
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+A RE + +LNY++DG+PF L M+ + G +F+ Q+ +
Sbjct: 403 ARFGKAAREGKDHSEVMLNYRRDGSPFMNLLMMAPLLDSR-GNLRYFIGAQIDV 455
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ + F L DP D P+++AS+ F + T Y +G+NCRFL G T + + + A
Sbjct: 350 LAEVFCLTDPSRTDNPIIFASEEFHRTTQYGVGYAIGRNCRFLQGPKTSRSTVARFGKAA 409
Query: 310 SPYPKKKSIYMEYVR 324
+ + Y R
Sbjct: 410 REGKDHSEVMLNYRR 424
>gi|378729746|gb|EHY56205.1| non-specific serine/threonine protein kinase [Exophiala
dermatitidis NIH/UT8656]
Length = 1002
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 65/120 (54%), Gaps = 1/120 (0%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R T + + + L + F +TDP+ +PI++AS F + +G+ ++IGRN R QGPRT
Sbjct: 303 RQTPLLGDLVGGLSEVFCLTDPNQEDNPIIYASAEFYRFTGYGPDDVIGRNCRFLQGPRT 362
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
R ++ +R +I E + I LLNY++DG PF L M + G + + Q +
Sbjct: 363 KRESVARLRRSIVEGQGISETLLNYRRDGRPFINLL-MIAPLHDDKGNVKYHIGAQADVT 421
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 247 LGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDT 297
+G + + F L DP+ D P++YAS F + TGY ++V+G+NCRFL G T
Sbjct: 312 VGGLSEVFCLTDPNQEDNPIIYASAEFYRFTGYGPDDVIGRNCRFLQGPRT 362
>gi|443476320|ref|ZP_21066232.1| multi-sensor hybrid histidine kinase [Pseudanabaena biceps PCC
7429]
gi|443018713|gb|ELS32917.1| multi-sensor hybrid histidine kinase [Pseudanabaena biceps PCC
7429]
Length = 1179
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 62/109 (56%), Gaps = 1/109 (0%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88
+ ITD + +PIV+ + F K+SG++ EI+G+N R QG ++ +R A+++
Sbjct: 294 NGIVITDVRLPNNPIVYVNSAFEKISGYTAGEIMGKNCRFLQGSDLFQQEKEILRNAVKQ 353
Query: 89 ERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+ V + NY+KDG+ FW +S +F G+ THF+ +Q I RK
Sbjct: 354 GKACRVVIRNYRKDGSLFWNELNISPIFDNM-GKVTHFIGIQSDITDRK 401
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 31/46 (67%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296
+ V+ D LP+ P+VY + AF K++GY E++G+NCRFL G D
Sbjct: 293 QNGIVITDVRLPNNPIVYVNSAFEKISGYTAGEIMGKNCRFLQGSD 338
Score = 38.1 bits (87), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 43 IVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKD 102
I +A+ F ++SG+S E++G+N R+ + ++ I + + N KD
Sbjct: 183 ITYANGKFCEISGYSEIELLGQNHRLINSDYHSPEFFADLWHTITNGKVWRGEICNRAKD 242
Query: 103 GTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
GT +W + + E G ++A++ I RK
Sbjct: 243 GTYYWTDSTIVPLLN-ERGLPMQYLAIRFDISDRK 276
>gi|416407631|ref|ZP_11688282.1| PAS containing protein [Crocosphaera watsonii WH 0003]
gi|357260847|gb|EHJ10190.1| PAS containing protein [Crocosphaera watsonii WH 0003]
Length = 483
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 68/128 (53%), Gaps = 1/128 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+++A+ +S ITD + S +PI++ + GF M+G+S E+ G+N R QG + +
Sbjct: 166 LYQAIAATNNSIVITDATASDYPIIYVNPGFEIMTGYSLQEVTGKNCRFLQGSDDQQPEL 225
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
+IR+ +++ V L NY+KDG+ FW +S + E G +++ VQ + +K
Sbjct: 226 EQIRDCLQKGESCHVTLRNYRKDGSLFWNEMSLSPI-KDESGNILYYLGVQTDVTDKKKA 284
Query: 140 RNSGMSYS 147
+ Y
Sbjct: 285 NETQQRYK 292
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S LY ++ S V+ D D P++Y + F +TGY EV G+NCRFL G D
Sbjct: 163 SHLLYQAIAATNNSIVITDATASDYPIIYVNPGFEIMTGYSLQEVTGKNCRFLQGSDDQQ 222
Query: 300 TVLYQV 305
L Q+
Sbjct: 223 PELEQI 228
>gi|427729687|ref|YP_007075924.1| PAS domain-containing protein [Nostoc sp. PCC 7524]
gi|427365606|gb|AFY48327.1| PAS domain S-box [Nostoc sp. PCC 7524]
Length = 1449
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88
+ I D SI PI++ + F M+G+S E+IGRN R FQ N+ + E+ A+
Sbjct: 970 NGMIIADASIPNGPIIYVNPAFESMTGYSADEVIGRNFRSFQSADINQPGLEELNAAMEV 1029
Query: 89 ERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R V L NY++DG+ FW +S V+ G+ TH++ +Q I RK +
Sbjct: 1030 GRGCSVVLQNYRQDGSLFWYELNISPVYDA-TGKLTHYIGIQTDITQRKQAETA 1082
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 33/56 (58%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
++ D +P+ P++Y + AF +TGY +EV+G+N R D + L +++ A+
Sbjct: 972 MIIADASIPNGPIIYVNPAFESMTGYSADEVIGRNFRSFQSADINQPGLEELNAAM 1027
>gi|448721018|ref|ZP_21703605.1| bacterio-opsin activator [Halobiforma nitratireducens JCM 10879]
gi|445780177|gb|EMA31079.1| bacterio-opsin activator [Halobiforma nitratireducens JCM 10879]
Length = 633
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 69/117 (58%), Gaps = 1/117 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++E P TI+DP +P+V+ + + +M+G+S +++GRN R+ QG ++ I E+
Sbjct: 128 AINEAPVGITISDPDREDNPLVYVNDAYEEMTGYSYDDVVGRNCRLLQGEDSSEEAIAEM 187
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
AI E+ P+ V + NY+KDGT FW ++ V + G T++V Q I +RK
Sbjct: 188 AAAIDEDYPVTVEIKNYRKDGTEFWNEVTIAPVR-NDAGEVTNYVGFQNDITARKEA 243
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 10/82 (12%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL----------Y 303
+ DP D P+VY +DA+ ++TGY ++VVG+NCR L G D+ + Y
Sbjct: 136 ITISDPDREDNPLVYVNDAYEEMTGYSYDDVVGRNCRLLQGEDSSEEAIAEMAAAIDEDY 195
Query: 304 QVSIAISPYPKKKSIYMEYVRV 325
V++ I Y K + + V +
Sbjct: 196 PVTVEIKNYRKDGTEFWNEVTI 217
>gi|134078226|emb|CAK96807.1| unnamed protein product [Aspergillus niger]
Length = 501
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 61/107 (57%), Gaps = 1/107 (0%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L + F +TDPS +PIVFAS F + + + ++GRN R QGP+TN ++ I+EAI
Sbjct: 278 LAEVFCLTDPSRRDNPIVFASEEFHRTTQYGMDYVLGRNCRFLQGPKTNANSVRRIKEAI 337
Query: 87 REERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
R LNY++DG+PF L + + + GR +F+ Q+ +
Sbjct: 338 EAGRHHSELFLNYRRDGSPFMNLLQCAPLCDSH-GRVRYFIGAQIDV 383
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ + F L DP D P+V+AS+ F + T Y + V+G+NCRFL G T+ + ++ AI
Sbjct: 278 LAEVFCLTDPSRRDNPIVFASEEFHRTTQYGMDYVLGRNCRFLQGPKTNANSVRRIKEAI 337
Query: 310 SPYPKKKSIYMEYVR 324
+++ Y R
Sbjct: 338 EAGRHHSELFLNYRR 352
>gi|298708460|emb|CBJ30584.1| aureochrome 5 [Ectocarpus siliculosus]
Length = 310
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+AL + +F +T+P++ PI+FAS+GFL ++G+ ++IG+N R QG T+ T+
Sbjct: 92 KALADSQANFVLTNPNLPDCPIIFASQGFLDLTGYDGNDVIGKNCRFLQGRGTDPVTLSI 151
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAV 129
IR + V +LNYKKD TPFW + ++ G+A + V V
Sbjct: 152 IRNNVAAGLDTSVCILNYKKDKTPFWNQLSIGVLLDSH-GQAANHVGV 198
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 10/90 (11%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL--- 302
+L + +FVL +P+LPD P+++AS FL LTGYD N+V+G+NCRFL G TD L
Sbjct: 93 ALADSQANFVLTNPNLPDCPIIFASQGFLDLTGYDGNDVIGKNCRFLQGRGTDPVTLSII 152
Query: 303 -------YQVSIAISPYPKKKSIYMEYVRV 325
S+ I Y K K+ + + +
Sbjct: 153 RNNVAAGLDTSVCILNYKKDKTPFWNQLSI 182
>gi|443323721|ref|ZP_21052724.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
protein [Gloeocapsa sp. PCC 73106]
gi|442786507|gb|ELR96237.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
protein [Gloeocapsa sp. PCC 73106]
Length = 1137
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 63/115 (54%), Gaps = 1/115 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
ALD + ITD S +P+V+ ++ F K++G+S E+ G N R QG + I EI
Sbjct: 201 ALDASSNGVVITDALASDNPVVYVNQSFTKITGYSSEEVTGNNCRFLQGKERLQPEIEEI 260
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
R AI + + L NY++DGT FW ++ + + G THF+ +Q I +RK
Sbjct: 261 RNAIAQGKECYTILRNYRQDGTLFWNELYLTPICDRH-GSLTHFLGIQSDITNRK 314
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 25/40 (62%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG 294
V+ D D P+VY + +F K+TGY EV G NCRFL G
Sbjct: 210 VITDALASDNPVVYVNQSFTKITGYSSEEVTGNNCRFLQG 249
>gi|399543882|ref|YP_006557190.1| sensory box/GGDEF domain-containing protein [Marinobacter sp.
BSs20148]
gi|399159214|gb|AFP29777.1| sensory box/GGDEF domain protein [Marinobacter sp. BSs20148]
Length = 429
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 70/115 (60%), Gaps = 3/115 (2%)
Query: 23 ALDELPDSFTITDPSI--SGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
AL++ ++ +TD + +GH IVF ++ FL+M+G++ E++GRN R+ QGP T+ I
Sbjct: 16 ALEQSYNAILLTDANSGEAGHRIVFVNQAFLRMTGYNEEELLGRNPRLLQGPATSPDVID 75
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135
++R + + +NY+KDG P+ + + +S V K G THF+++Q I S
Sbjct: 76 KLRHCLHSGTHFQGTTVNYRKDGRPYTVEWNVSPVHNKA-GEITHFISLQRDISS 129
>gi|299530043|ref|ZP_07043470.1| diguanylate cyclase with PAS/PAC sensor [Comamonas testosteroni
S44]
gi|298722023|gb|EFI62953.1| diguanylate cyclase with PAS/PAC sensor [Comamonas testosteroni
S44]
Length = 435
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 72/114 (63%), Gaps = 3/114 (2%)
Query: 23 ALDELPDSFTITDPSISGHP--IVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
A+ + ++ ITD ++G I + ++ F M+G++ E++GR+ R+ QGP T+++ I
Sbjct: 2 AVAQAFNAVVITDAEMAGGGPFISYCNKAFTSMTGYATEELLGRSPRILQGPETDQQVIE 61
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
++R+ + E R + + +NY+KDGTP+ + + +S V DG+ THFV+VQ +
Sbjct: 62 QLRQCLAEGRFFQGSAVNYRKDGTPYHVSWNISAVR-DVDGKITHFVSVQQDVT 114
Score = 38.1 bits (87), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 43 IVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKD 102
+VF + F +G+ AE++GR M Q + E+R+A+ +N +KD
Sbjct: 146 LVFVNHAFEHQTGYCAAEVMGRTPAMLQSGSHTAQFYAELRDALVRGENFSRTFINRRKD 205
Query: 103 GTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
G + +S R TH+V++ I
Sbjct: 206 GELYHAAQSIS-ALRDASHRITHYVSISKDI 235
>gi|399911282|ref|ZP_10779596.1| sensory box/FOG: EAL domain/GGDEF domain containing protein
[Halomonas sp. KM-1]
Length = 743
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 62/114 (54%), Gaps = 1/114 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ ++ P+ I D + P+V+A+ F + +G++ E++GRN R G T+ + +
Sbjct: 180 LQRGVEATPNGIMIADALLPDTPLVYANESFYRTTGYTPDEVLGRNCRYLHGEETDPQAL 239
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+R A++ IEV LLNY+KD + FW +S + E R THF+ +Q I
Sbjct: 240 DALRSALQRHTEIEVTLLNYRKDKSTFWNHLSISPIL-DEHERCTHFIGIQQDI 292
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 10/82 (12%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL----------Y 303
++ D LPD P+VYA+++F + TGY +EV+G+NCR+L+G +TD L
Sbjct: 191 IMIADALLPDTPLVYANESFYRTTGYTPDEVLGRNCRYLHGEETDPQALDALRSALQRHT 250
Query: 304 QVSIAISPYPKKKSIYMEYVRV 325
++ + + Y K KS + ++ +
Sbjct: 251 EIEVTLLNYRKDKSTFWNHLSI 272
>gi|358059757|dbj|GAA94526.1| hypothetical protein E5Q_01178 [Mixia osmundae IAM 14324]
Length = 1552
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 68/129 (52%), Gaps = 5/129 (3%)
Query: 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTN 75
+TL E L D F IT+P HPI+ AS F++++G+SR I RN R QGP T+
Sbjct: 1191 FTLRDKEKGQGLGDCFVITNPRQRDHPIIGASDAFVELTGYSRQAICSRNCRFLQGPSTS 1250
Query: 76 RRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV---- 131
R + IR A+ + LLNY+++G PF+ L + DG +++ Q+
Sbjct: 1251 REAVARIRVALNTGQACTELLLNYRQNGQPFFNLLCI-FPLRDTDGSVSYYCGGQINVSG 1309
Query: 132 PIVSRKHMR 140
P+ S K +R
Sbjct: 1310 PLKSSKSLR 1318
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 37/57 (64%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
FV+ +P D P++ ASDAF++LTGY R + +NCRFL G T + ++ +A++
Sbjct: 1206 FVITNPRQRDHPIIGASDAFVELTGYSRQAICSRNCRFLQGPSTSREAVARIRVALN 1262
>gi|338210497|ref|YP_004654546.1| multi-sensor signal transduction histidine kinase [Runella
slithyformis DSM 19594]
gi|336304312|gb|AEI47414.1| multi-sensor signal transduction histidine kinase [Runella
slithyformis DSM 19594]
Length = 1171
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 63/99 (63%), Gaps = 1/99 (1%)
Query: 40 GHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNY 99
G I++ + F M+G++R +++G+ R+ QGP+T+RR + +R A+ +P E+ ++NY
Sbjct: 181 GPRILYVNAAFTHMTGYTREDVLGKTPRILQGPKTDRRELDRMRHALETWQPCEITVINY 240
Query: 100 KKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
KK G FW+ ++ V E+G TH+V+++ + +K+
Sbjct: 241 KKTGEEFWIHMAVNPV-ADENGWYTHWVSIERDVTQQKN 278
>gi|317031924|ref|XP_001393681.2| white collar [Aspergillus niger CBS 513.88]
Length = 588
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 61/107 (57%), Gaps = 1/107 (0%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L + F +TDPS +PIVFAS F + + + ++GRN R QGP+TN ++ I+EAI
Sbjct: 278 LAEVFCLTDPSRRDNPIVFASEEFHRTTQYGMDYVLGRNCRFLQGPKTNANSVRRIKEAI 337
Query: 87 REERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
R LNY++DG+PF L + + + GR +F+ Q+ +
Sbjct: 338 EAGRHHSELFLNYRRDGSPFMNLLQCAPLCDSH-GRVRYFIGAQIDV 383
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ + F L DP D P+V+AS+ F + T Y + V+G+NCRFL G T+ + ++ AI
Sbjct: 278 LAEVFCLTDPSRRDNPIVFASEEFHRTTQYGMDYVLGRNCRFLQGPKTNANSVRRIKEAI 337
Query: 310 SPYPKKKSIYMEYVR 324
+++ Y R
Sbjct: 338 EAGRHHSELFLNYRR 352
>gi|448745950|ref|ZP_21727620.1| Diguanylate phosphodiesterase, EAL domain [Halomonas titanicae BH1]
gi|445566678|gb|ELY22784.1| Diguanylate phosphodiesterase, EAL domain [Halomonas titanicae BH1]
Length = 685
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
I D S P+V+ + F +++G+SR + +GRN R QG T+ T+ +++ I E+R +
Sbjct: 139 IVDAQSSDLPLVYVNAAFERITGYSRNQALGRNCRFLQGEETDPATVKQLQVGITEQREV 198
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
V + NY+ DGT FW +S V E+G+ THFV VQ I ++
Sbjct: 199 HVVIRNYRHDGTVFWNDLHISPV-RDENGQVTHFVGVQNDISEQR 242
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 39/56 (69%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
+++D D+P+VY + AF ++TGY RN+ +G+NCRFL G +TD + Q+ + I+
Sbjct: 138 LIVDAQSSDLPLVYVNAAFERITGYSRNQALGRNCRFLQGEETDPATVKQLQVGIT 193
>gi|393769601|ref|ZP_10358123.1| putative PAS/PAC sensor protein [Methylobacterium sp. GXF4]
gi|392725072|gb|EIZ82415.1| putative PAS/PAC sensor protein [Methylobacterium sp. GXF4]
Length = 164
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 62/104 (59%), Gaps = 7/104 (6%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP +PIVFA+ FL ++G++R E+ GRN R QGP T + +R AIR+ I
Sbjct: 38 VTDPRQYDNPIVFANDAFLNLTGYTRLEVTGRNCRFLQGPGTEAAAVDRLRAAIRQGVDI 97
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFG---KEDGRATHFVAVQVPI 133
+++LLNY+KDG+ +F+ +L G G ++ A Q+ +
Sbjct: 98 KIDLLNYRKDGS----VFQNALYVGPVRDATGTVVYYFASQIDV 137
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 37/55 (67%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
++ DP D P+V+A+DAFL LTGY R EV G+NCRFL G T+ + ++ AI
Sbjct: 37 IVTDPRQYDNPIVFANDAFLNLTGYTRLEVTGRNCRFLQGPGTEAAAVDRLRAAI 91
>gi|6729194|dbj|BAA89701.1| 145..153:the transposed position of ISY203g in Kazusa
strain~ORF_ID:sll1473-sll1475~a part of phytochrome-like
sequence (sll1473-sll1475) in wild type [Synechocystis
sp. PCC 6803]
gi|6729196|dbj|BAA89702.1| 145..153:the transposed position of ISY203g in Kazusa
strain~ORF_ID:sll1473-sll1475~a part of phytochrome-like
sequence (sll1473-sll1475) in substrain GT
(glucose-tolerant) [Synechocystis sp. PCC 6803]
Length = 107
Score = 77.8 bits (190), Expect = 7e-12, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 43 IVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKD 102
I++ + F K++G++ E++G+ R+ QGP+T+R + +R+AI + + + V ++NY+KD
Sbjct: 4 ILYVNEAFTKIAGYTAEEMLGKTPRVLQGPKTSRTELDRVRQAISQWQSVTVEVINYRKD 63
Query: 103 GTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
G+ FW+ F + V K G TH++AVQ + R+
Sbjct: 64 GSEFWVEFSLVPVANKT-GFYTHWIAVQRDVTERR 97
>gi|317158631|ref|XP_001827136.2| white collar [Aspergillus oryzae RIB40]
gi|391873416|gb|EIT82459.1| hypothetical protein Ao3042_00388 [Aspergillus oryzae 3.042]
Length = 565
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 62/109 (56%), Gaps = 1/109 (0%)
Query: 25 DELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIRE 84
D L + F +TDPS +PI+FAS F + + + ++GRN R QGP+TN ++ IRE
Sbjct: 248 DALAEVFCLTDPSRRDNPIIFASEEFHRTTQYGMDYVLGRNCRFLQGPKTNPNSVRRIRE 307
Query: 85 AIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
AI R LNY++DG+PF L + + + + G +F+ Q+ +
Sbjct: 308 AIVAGRHHSELFLNYRRDGSPFMNLLQCAPLCDSQ-GTVRYFIGAQIDV 355
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ + F L DP D P+++AS+ F + T Y + V+G+NCRFL G T+ + ++ AI
Sbjct: 250 LAEVFCLTDPSRRDNPIIFASEEFHRTTQYGMDYVLGRNCRFLQGPKTNPNSVRRIREAI 309
Query: 310 SPYPKKKSIYMEYVR 324
+++ Y R
Sbjct: 310 VAGRHHSELFLNYRR 324
>gi|336239517|ref|XP_003342678.1| hypothetical protein SMAC_10293 [Sordaria macrospora k-hell]
Length = 246
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Query: 45 FASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGT 104
FA+ FL+M+G++ E++GRN R QGP T+ T+ EI EAIR R V ++NYKK+G+
Sbjct: 82 FANPAFLQMTGYAADEVLGRNCRFLQGPDTDPDTVAEISEAIRRHRETSVEIINYKKNGS 141
Query: 105 PFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
FW +S V E G ++ A Q+ + R+
Sbjct: 142 AFWNALFISPVLDGE-GELRYYFASQLDVTRRR 173
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 32/42 (76%)
Query: 268 YASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+A+ AFL++TGY +EV+G+NCRFL G DTD + ++S AI
Sbjct: 82 FANPAFLQMTGYAADEVLGRNCRFLQGPDTDPDTVAEISEAI 123
>gi|407918006|gb|EKG11304.1| PAS domain-containing protein [Macrophomina phaseolina MS6]
Length = 693
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 66/109 (60%), Gaps = 1/109 (0%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L + + +TDPS+ +PIV+AS F + + R +IGRN R QGP+T ++ IREAI
Sbjct: 214 LAEVYCLTDPSLPDNPIVYASEEFHLATQYGRDYVIGRNCRFLQGPKTAPDSVRRIREAI 273
Query: 87 REERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135
R + I LLNY++DG+PF L ++ ++ + G +F+ Q+ + +
Sbjct: 274 RSGQEICEILLNYRRDGSPFINLCLVAPLYDNK-GNVRYFIGCQIDVTN 321
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 37/60 (61%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ + + L DP LPD P+VYAS+ F T Y R+ V+G+NCRFL G T + ++ AI
Sbjct: 214 LAEVYCLTDPSLPDNPIVYASEEFHLATQYGRDYVIGRNCRFLQGPKTAPDSVRRIREAI 273
>gi|264678991|ref|YP_003278898.1| PAS/PAC sensor-containing diguanylate cyclase [Comamonas
testosteroni CNB-2]
gi|262209504|gb|ACY33602.1| diguanylate cyclase with PAS/PAC sensor [Comamonas testosteroni
CNB-2]
Length = 458
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 72/114 (63%), Gaps = 3/114 (2%)
Query: 23 ALDELPDSFTITDPSISGHP--IVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
A+ + ++ ITD ++G I + ++ F M+G++ E++GR+ RM QGP T+++ I
Sbjct: 25 AVAQAFNAVVITDAEMAGGGPFIRYCNKAFTSMTGYATEELLGRSPRMLQGPETDQQVIE 84
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
++R+ + E R + + +NY+KDGTP+ + + +S V +G+ THFV+VQ +
Sbjct: 85 QLRQCLAEGRFFQGSAVNYRKDGTPYHVSWNISAVR-DVNGKITHFVSVQQDVT 137
Score = 38.1 bits (87), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 43 IVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKD 102
+VF + F +G+ AE++GR M Q + E+R+A+ +N +KD
Sbjct: 169 LVFVNHAFEHQTGYCAAEVMGRTPAMLQSGSHTAQFYAELRDALVRGENFSRTFINRRKD 228
Query: 103 GTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
G + +S + R TH+V++ I
Sbjct: 229 GELYHAAQSISALRDARH-RITHYVSISKDI 258
>gi|75906870|ref|YP_321166.1| multi-sensor signal transduction histidine kinase [Anabaena
variabilis ATCC 29413]
gi|75700595|gb|ABA20271.1| multi-sensor signal transduction histidine kinase [Anabaena
variabilis ATCC 29413]
Length = 1741
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 65/120 (54%), Gaps = 1/120 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+D + I D S PI++ + F +M+G+S E+IG+N R+FQ ++ + E+
Sbjct: 1257 AIDASSNGIIIADASTPNRPIIYVNPAFERMTGYSSDEVIGQNFRLFQSADIDQLGLREL 1316
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
A++ + V L NY+KDG+ W +S V+ + G+ TH++ +Q I RK +
Sbjct: 1317 STAMQAGKACTVVLRNYRKDGSLLWNELNISPVY-DQTGQLTHYIGIQTDITERKQAETA 1375
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
++ D P+ P++Y + AF ++TGY +EV+GQN R D D L ++S A+
Sbjct: 1265 IIIADASTPNRPIIYVNPAFERMTGYSSDEVIGQNFRLFQSADIDQLGLRELSTAMQ 1321
>gi|296532471|ref|ZP_06895191.1| methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
[Roseomonas cervicalis ATCC 49957]
gi|296267203|gb|EFH13108.1| methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
[Roseomonas cervicalis ATCC 49957]
Length = 600
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 66/115 (57%), Gaps = 5/115 (4%)
Query: 25 DELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN-GRMFQGPRTNRRTIMEIR 83
DE +S I P I + ++GF +M+G+ E +GR+ G QGP T+ T+ IR
Sbjct: 282 DETDNSVVICGPD---RLIRYVNKGFTRMTGYGAEEAMGRSPGSFLQGPLTDPATVRRIR 338
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
EA+++ RPI +LNY+KDG +W+ ++ V G DGR + ++++Q + K
Sbjct: 339 EALQQGRPIYDEILNYRKDGETYWISLAINPVLGP-DGRPSAYISIQANVTETKR 392
>gi|374999131|ref|YP_004974629.1| Hybrid sensor histidine kinase [Azospirillum lipoferum 4B]
gi|357426556|emb|CBS89485.1| Hybrid sensor histidine kinase [Azospirillum lipoferum 4B]
Length = 719
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 47/77 (61%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
+ D + G PIV+ +R FL++ G+ E IGR+ QGP T+ T IR A+ E R
Sbjct: 32 IVVHDATRPGQPIVYCNRAFLEIVGYRAEEAIGRDASFLQGPDTDPETAATIRSAMAEAR 91
Query: 91 PIEVNLLNYKKDGTPFW 107
P+ V +LNY+KDG+ FW
Sbjct: 92 PLSVEVLNYRKDGSAFW 108
Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
V+ D P P+VY + AFL++ GY E +G++ FL G DTD + A++
Sbjct: 32 IVVHDATRPGQPIVYCNRAFLEIVGYRAEEAIGRDASFLQGPDTDPETAATIRSAMA 88
>gi|238506347|ref|XP_002384375.1| white collar, putative [Aspergillus flavus NRRL3357]
gi|220689088|gb|EED45439.1| white collar, putative [Aspergillus flavus NRRL3357]
Length = 499
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 62/109 (56%), Gaps = 1/109 (0%)
Query: 25 DELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIRE 84
D L + F +TDPS +PI+FAS F + + + ++GRN R QGP+TN ++ IRE
Sbjct: 182 DALAEVFCLTDPSRRDNPIIFASEEFHRTTQYGMDYVLGRNCRFLQGPKTNPNSVRRIRE 241
Query: 85 AIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
AI R LNY++DG+PF L + + + + G +F+ Q+ +
Sbjct: 242 AIIAGRHHSELFLNYRRDGSPFMNLLQCAPLCDSQ-GTVRYFIGAQIDV 289
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ + F L DP D P+++AS+ F + T Y + V+G+NCRFL G T+ + ++ AI
Sbjct: 184 LAEVFCLTDPSRRDNPIIFASEEFHRTTQYGMDYVLGRNCRFLQGPKTNPNSVRRIREAI 243
Query: 310 SPYPKKKSIYMEYVR 324
+++ Y R
Sbjct: 244 IAGRHHSELFLNYRR 258
>gi|429854006|gb|ELA29042.1| hypothetical protein CGGC5_1230 [Colletotrichum gloeosporioides
Nara gc5]
Length = 638
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 67/107 (62%), Gaps = 5/107 (4%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L +SF +TD +PIV AS F+ ++GFS+ E + RN R QG T++ TI IREA+
Sbjct: 265 LGESFCLTDALNPENPIVAASDAFVSLTGFSKIEALPRNCRFLQGGLTDQDTIKRIREAV 324
Query: 87 -REERPIEVNLLNYKKDGTPFW-MLFKMSLVFGKEDGRATHFVAVQV 131
+EE +E+ +LNY++DGTPFW +LF L G+ +++ QV
Sbjct: 325 VQEEESLEL-ILNYRRDGTPFWNLLFTCPLT--DSSGKVRYYLGGQV 368
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLY 303
Y LG +SF L D P+ P+V ASDAF+ LTG+ + E + +NCRFL G TD +
Sbjct: 262 YPGLG---ESFCLTDALNPENPIVAASDAFVSLTGFSKIEALPRNCRFLQGGLTDQDTIK 318
Query: 304 QVSIAI 309
++ A+
Sbjct: 319 RIREAV 324
>gi|367021966|ref|XP_003660268.1| hypothetical protein MYCTH_2298367 [Myceliophthora thermophila ATCC
42464]
gi|347007535|gb|AEO55023.1| hypothetical protein MYCTH_2298367 [Myceliophthora thermophila ATCC
42464]
Length = 663
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 59/105 (56%), Gaps = 2/105 (1%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L D+F +TDP +P++FAS G L M+G+ R +++G N R+FQG T+ + EA+
Sbjct: 139 LGDAFCLTDPLRPNNPVIFASDGLLNMAGYHRRQLVGENCRLFQGIATDPEAAGRLGEAV 198
Query: 87 REERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
R +LNY+ DGTP+W L + + +G +F QV
Sbjct: 199 ESGRETTELVLNYRLDGTPYWNLLYICPLM--RNGSVRYFFGAQV 241
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTV 301
+LY LG +F L DP P+ P+++ASD L + GY R ++VG+NCR G+ TD
Sbjct: 134 TLYPGLG---DAFCLTDPLRPNNPVIFASDGLLNMAGYHRRQLVGENCRLFQGIATDPEA 190
Query: 302 LYQVSIAI 309
++ A+
Sbjct: 191 AGRLGEAV 198
>gi|119490770|ref|ZP_01623102.1| PleD-like protein [Lyngbya sp. PCC 8106]
gi|119453754|gb|EAW34912.1| PleD-like protein [Lyngbya sp. PCC 8106]
Length = 1252
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 61/104 (58%), Gaps = 1/104 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
I+DP+ +PI++ + GF KM+G+ AE+IG+N R ++ + EI A RE+R
Sbjct: 303 ISDPTQQKNPIIYVNSGFEKMTGYRAAEVIGKNHRFLYRDDIHQAGLQEIETAWREKRSC 362
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
V + NY++DGT FW S V E+ R TH+V+++ I R
Sbjct: 363 SVIVRNYREDGTLFWTEVTTSPVRDPEE-RLTHYVSIKTDITER 405
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIA 308
V+ DP P++Y + F K+TGY EV+G+N RFL D L ++ A
Sbjct: 302 VISDPTQQKNPIIYVNSGFEKMTGYRAAEVIGKNHRFLYRDDIHQAGLQEIETA 355
>gi|110679404|ref|YP_682411.1| sensory box histidine kinase [Roseobacter denitrificans OCh 114]
gi|109455520|gb|ABG31725.1| sensory box histidine kinase, putative [Roseobacter denitrificans
OCh 114]
Length = 350
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 67/112 (59%), Gaps = 7/112 (6%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+ +T+P++ +PIV+A+ F++ +G+S + I+GRN R QG T++ + +R AI +
Sbjct: 33 AMVMTNPNLDDNPIVYANEAFVRTTGYSHSAIVGRNCRFLQGEDTDKAAVDVLRHAIELD 92
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
+ + V++LNYK +G PF +S + + GR +F+ +Q K +RN
Sbjct: 93 QNVTVDILNYKANGAPFMNRLIVSPIMDAQ-GRTEYFIGIQ------KELRN 137
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 39/54 (72%)
Query: 249 RIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
R + + V+ +P+L D P+VYA++AF++ TGY + +VG+NCRFL G DTD +
Sbjct: 29 RSQVAMVMTNPNLDDNPIVYANEAFVRTTGYSHSAIVGRNCRFLQGEDTDKAAV 82
>gi|90420751|ref|ZP_01228657.1| putative sensor histidine kinase/response regulator, possible
photoreceptor [Aurantimonas manganoxydans SI85-9A1]
gi|90335042|gb|EAS48803.1| putative sensor histidine kinase/response regulator, possible
photoreceptor [Aurantimonas manganoxydans SI85-9A1]
Length = 415
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 63/97 (64%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL ++P + +T+P++ +PIV+A+R F K++ +S +IGRN R QG T+ + ++
Sbjct: 22 ALAKMPLALVLTNPNLDDNPIVYANRAFEKITRYSADAVIGRNCRFLQGDDTDPAQVRQL 81
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKE 119
+A+REER V+++NY+ DGT F ++ ++ +E
Sbjct: 82 AQAVREERDFSVDIVNYRSDGTRFLNRLMITPLYDEE 118
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 44/64 (68%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
+L ++ + VL +P+L D P+VYA+ AF K+T Y + V+G+NCRFL G DTD + Q+
Sbjct: 22 ALAKMPLALVLTNPNLDDNPIVYANRAFEKITRYSADAVIGRNCRFLQGDDTDPAQVRQL 81
Query: 306 SIAI 309
+ A+
Sbjct: 82 AQAV 85
>gi|67925445|ref|ZP_00518788.1| PAS [Crocosphaera watsonii WH 8501]
gi|67852704|gb|EAM48120.1| PAS [Crocosphaera watsonii WH 8501]
Length = 297
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 67/120 (55%), Gaps = 1/120 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+++A+ +S ITD + S +PI++ + GF M+G+S E+ G+N R QG + +
Sbjct: 166 LYQAIAATNNSIVITDATASDYPIIYVNPGFEIMTGYSLQEVTGKNCRFLQGSDDQQPEL 225
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
+IR+ +++ V L NY+KDG+ FW +S + E G +++ VQ + +K +
Sbjct: 226 EQIRDCLQKGESCHVTLRNYRKDGSLFWNEMSLSPI-KDESGNILYYLGVQTDVTDKKKL 284
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S LY ++ S V+ D D P++Y + F +TGY EV G+NCRFL G D
Sbjct: 163 SHLLYQAIAATNNSIVITDATASDYPIIYVNPGFEIMTGYSLQEVTGKNCRFLQGSDDQQ 222
Query: 300 TVLYQV 305
L Q+
Sbjct: 223 PELEQI 228
>gi|448643771|ref|ZP_21678903.1| PAS domain S-box [Haloarcula sinaiiensis ATCC 33800]
gi|445758223|gb|EMA09546.1| PAS domain S-box [Haloarcula sinaiiensis ATCC 33800]
Length = 870
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
T+ DPS +P+V+ + F +G+ AE +GRN R QG T+ + IR+AI +E
Sbjct: 278 ITLVDPSQEDNPLVYINDAFEDATGYPSAEALGRNCRFLQGEDTDPEKVTAIRDAIDDEE 337
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
PI + L NY++DGT FW ++ ++ + G ++ Q I
Sbjct: 338 PIALELRNYQRDGTEFWNHLTLTPIY-DDSGDLVRYIGTQEDIT 380
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 33/57 (57%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
L+DP D P+VY +DAF TGY E +G+NCRFL G DTD + + AI
Sbjct: 278 ITLVDPSQEDNPLVYINDAFEDATGYPSAEALGRNCRFLQGEDTDPEKVTAIRDAID 334
>gi|347976015|ref|XP_003437337.1| unnamed protein product [Podospora anserina S mat+]
gi|170940195|emb|CAP65422.1| unnamed protein product [Podospora anserina S mat+]
Length = 723
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 60/116 (51%), Gaps = 5/116 (4%)
Query: 19 WVHEALDELP---DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTN 75
W L P D+F +T P +PI+ AS L+MSG+ R EI+ +N R FQG T+
Sbjct: 274 WAGGFLSTCPGLGDAFCLTTPLEPDNPIICASDALLRMSGYGRKEIMNKNCRFFQGICTD 333
Query: 76 RRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+ EAI L+NY+KDGTPFW L + +F E G +F+ Q+
Sbjct: 334 PEATRRLSEAISTGHEASELLINYRKDGTPFWNLLFVCPLF--EGGTIRYFLGAQI 387
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
+F L P PD P++ ASDA L+++GY R E++ +NCRF G+ TD ++S AIS
Sbjct: 288 AFCLTTPLEPDNPIICASDALLRMSGYGRKEIMNKNCRFFQGICTDPEATRRLSEAIS 345
>gi|17228724|ref|NP_485272.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
gi|17130576|dbj|BAB73186.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
Length = 1749
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 65/120 (54%), Gaps = 1/120 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+D + I D S PI++ + F +M+G+S E+IG+N R+FQ ++ + E+
Sbjct: 1257 AIDASSNGIIIADASTPNRPIIYVNPAFERMTGYSSDEVIGQNFRLFQSADIDQLGLREL 1316
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
A++ + V L NY+KDG+ W +S V+ + G+ TH++ +Q I RK +
Sbjct: 1317 STAMQAGKACTVILRNYRKDGSLLWNELNISPVY-DQTGQLTHYIGIQTDITERKQAETA 1375
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
++ D P+ P++Y + AF ++TGY +EV+GQN R D D L ++S A+
Sbjct: 1265 IIIADASTPNRPIIYVNPAFERMTGYSSDEVIGQNFRLFQSADIDQLGLRELSTAMQ 1321
>gi|390440120|ref|ZP_10228472.1| Multi-sensor signal transduction histidine kinase [Microcystis sp.
T1-4]
gi|389836486|emb|CCI32596.1| Multi-sensor signal transduction histidine kinase [Microcystis sp.
T1-4]
Length = 897
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Query: 40 GHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNY 99
G I++ ++ F M+G+S E++G+ R+FQGP+T+ + +R+A +P+ +NY
Sbjct: 424 GPRILYVNQAFTTMTGYSLEEVLGQTPRIFQGPKTDPEAVKRVRDAFLRLQPVTGEAINY 483
Query: 100 KKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+KDG+ FW+ F + V K G+ TH++++Q I RK +
Sbjct: 484 RKDGSEFWVEFSIVPVADKR-GKYTHWISIQRDISERKQTEEA 525
>gi|313126511|ref|YP_004036781.1| pas domain s-box [Halogeometricum borinquense DSM 11551]
gi|448286665|ref|ZP_21477890.1| pas domain s-box [Halogeometricum borinquense DSM 11551]
gi|312292876|gb|ADQ67336.1| PAS domain S-box [Halogeometricum borinquense DSM 11551]
gi|445574042|gb|ELY28551.1| pas domain s-box [Halogeometricum borinquense DSM 11551]
Length = 648
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 62/115 (53%), Gaps = 1/115 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE +I+D P+++ + GF +++G+S E +GRN QG +T+ +
Sbjct: 302 AMDEAQVGISISDIREPNEPLIYVNEGFERVTGYSAEETLGRNLCFLQGEQTDPERSQRL 361
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
AI P+ V L+NY++DGTPFW ++ V K G TH+V Q + RK
Sbjct: 362 ETAIDAGEPVVVELINYRRDGTPFWNQIYLAPVDDK-TGAITHYVGFQQDVTERK 415
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 262 PDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
P+ P++Y ++ F ++TGY E +G+N FL G TD ++ AI
Sbjct: 318 PNEPLIYVNEGFERVTGYSAEETLGRNLCFLQGEQTDPERSQRLETAI 365
>gi|451997274|gb|EMD89739.1| hypothetical protein COCHEDRAFT_1177632 [Cochliobolus
heterostrophus C5]
Length = 809
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 63/115 (54%), Gaps = 1/115 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ EA + L + F +TDPS + +PI+FAS F + + + IGRN R QGP+TNR ++
Sbjct: 378 LREASEGLAEVFCLTDPSRADNPIIFASEEFHRTTQYGVNYAIGRNCRFLQGPKTNRNSV 437
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
A+RE + LNY++DG+PF L M+ G +F+ Q+ +
Sbjct: 438 ARFGAAVREGKDHSEVFLNYRRDGSPFMNLL-MTAPLCDSRGTVRYFIGAQIDVT 491
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 4/116 (3%)
Query: 209 DNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVY 268
D++ + +TH KR + G + L + + + F L DP D P+++
Sbjct: 348 DDLPAFITHVFAQVASSSIAKRVT----GNLPPMLREASEGLAEVFCLTDPSRADNPIIF 403
Query: 269 ASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYPKKKSIYMEYVR 324
AS+ F + T Y N +G+NCRFL G T+ + + A+ +++ Y R
Sbjct: 404 ASEEFHRTTQYGVNYAIGRNCRFLQGPKTNRNSVARFGAAVREGKDHSEVFLNYRR 459
>gi|336471528|gb|EGO59689.1| hypothetical protein NEUTE1DRAFT_121442 [Neurospora tetrasperma
FGSC 2508]
gi|350292631|gb|EGZ73826.1| hypothetical protein NEUTE2DRAFT_87425, partial [Neurospora
tetrasperma FGSC 2509]
Length = 717
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 62/108 (57%), Gaps = 4/108 (3%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L ++F +TD +PIV+AS GFL+M GF R E++ RN R QG TN + +R AI
Sbjct: 215 LGNAFCLTDSWKPDNPIVYASEGFLRMFGFERHEVLQRNCRFMQGNSTNGDAVHRMRNAI 274
Query: 87 REERPIEVNLLNYKKDGTPFW-MLFKMSLVFGKEDGRATHFVAVQVPI 133
R ++NY+KDGTPFW LF LV EDG + + Q+ I
Sbjct: 275 FMGREHTELIVNYRKDGTPFWNFLFICPLV---EDGIVRYCLGGQINI 319
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 219 SQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG 278
SQL RL + P S Y LG +F L D PD P+VYAS+ FL++ G
Sbjct: 187 SQLANRLRASLSVTQPSSSIPFKSTYPGLG---NAFCLTDSWKPDNPIVYASEGFLRMFG 243
Query: 279 YDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
++R+EV+ +NCRF+ G T+ ++++ AI
Sbjct: 244 FERHEVLQRNCRFMQGNSTNGDAVHRMRNAI 274
>gi|114705618|ref|ZP_01438521.1| sensory box histidine kinase [Fulvimarina pelagi HTCC2506]
gi|114538464|gb|EAU41585.1| sensory box histidine kinase [Fulvimarina pelagi HTCC2506]
Length = 420
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL +LP + +T+P + +PI++A+R F ++G+S IIGRN R QG T+ + I
Sbjct: 22 ALSKLPLALVLTNPHLDDNPIIYANRAFETITGYSAGAIIGRNCRFLQGENTDPEHVRRI 81
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
EA+R E + V + NY+ DGT F ++ ++ D F+ VQ
Sbjct: 82 SEALRNEEDVTVEIENYRADGTKFLNKLMITPLYDDHDNLQC-FLGVQ 128
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 43/64 (67%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
+L ++ + VL +PHL D P++YA+ AF +TGY ++G+NCRFL G +TD + ++
Sbjct: 22 ALSKLPLALVLTNPHLDDNPIIYANRAFETITGYSAGAIIGRNCRFLQGENTDPEHVRRI 81
Query: 306 SIAI 309
S A+
Sbjct: 82 SEAL 85
>gi|381159942|ref|ZP_09869174.1| PAS domain S-box [Thiorhodovibrio sp. 970]
gi|380878006|gb|EIC20098.1| PAS domain S-box [Thiorhodovibrio sp. 970]
Length = 155
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 66/117 (56%), Gaps = 1/117 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ + LD + + T++DP +PIV+A+ F ++G+ R EIIGRN R QG + +
Sbjct: 16 LSQILDTVVNGVTLSDPDQPDNPIVYANEAFELITGYEREEIIGRNCRFLQGEDDEQPEL 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
IRE + ++ + V L NY+KDG+ F+ F + +F E G +++ +Q + +
Sbjct: 76 ARIREGLDKQESVTVTLRNYRKDGSLFYNQFTIRPLFDHE-GNLLYYLGIQYDVTEK 131
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%)
Query: 237 GFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296
G I L L + L DP PD P+VYA++AF +TGY+R E++G+NCRFL G D
Sbjct: 10 GLIPFVLSQILDTVVNGVTLSDPDQPDNPIVYANEAFELITGYEREEIIGRNCRFLQGED 69
Query: 297 TDTTVLYQV 305
+ L ++
Sbjct: 70 DEQPELARI 78
>gi|46202968|ref|ZP_00052303.2| COG3920: Signal transduction histidine kinase [Magnetospirillum
magnetotacticum MS-1]
Length = 358
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 66/110 (60%), Gaps = 1/110 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+ ITDP+ +PIV+A+ FL+++G++R E+ GRN R QGP T+ + IR AI E
Sbjct: 35 AMIITDPNRLDNPIVYANDAFLRLTGYTRLEVTGRNCRFLQGPDTDLDAVARIRAAIASE 94
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
R ++V LLNY+KDG+ F +S V EDG F A Q+ + R +
Sbjct: 95 RDVQVELLNYRKDGSTFHNAVYISPVH-DEDGTLLFFFASQLDVSERHAL 143
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 49/79 (62%), Gaps = 6/79 (7%)
Query: 220 QLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGY 279
QLT R+ G R G G + ++ + + ++ DP+ D P+VYA+DAFL+LTGY
Sbjct: 8 QLTERVWAGARS---GKG---NPFAAAVRATRMAMIITDPNRLDNPIVYANDAFLRLTGY 61
Query: 280 DRNEVVGQNCRFLNGVDTD 298
R EV G+NCRFL G DTD
Sbjct: 62 TRLEVTGRNCRFLQGPDTD 80
>gi|399543355|ref|YP_006556663.1| two-component response regulator [Marinobacter sp. BSs20148]
gi|399158687|gb|AFP29250.1| Two-component response regulator [Marinobacter sp. BSs20148]
Length = 859
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 58/110 (52%), Gaps = 1/110 (0%)
Query: 28 PDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIR 87
P+ + D P+V+A+ F +++G++ EI+G + + G T+ + I +R
Sbjct: 310 PNGIVMADARHPEMPMVYANPAFSEITGYTHNEIVGHSWHVLHGENTSPEAVEAIERGLR 369
Query: 88 EERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+ I V L+NY+KDG PFW ++S VF DG THF+ Q I K
Sbjct: 370 HQTEINVELINYRKDGMPFWNHLRVSPVFDT-DGLCTHFIGHQQDITHHK 418
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 30/44 (68%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDT 297
V+ D P+MPMVYA+ AF ++TGY NE+VG + L+G +T
Sbjct: 313 IVMADARHPEMPMVYANPAFSEITGYTHNEIVGHSWHVLHGENT 356
>gi|448473479|ref|ZP_21601621.1| PAS-PAC-PAC sensing histidine kinase [Halorubrum aidingense JCM
13560]
gi|445818991|gb|EMA68840.1| PAS-PAC-PAC sensing histidine kinase [Halorubrum aidingense JCM
13560]
Length = 981
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 64/116 (55%), Gaps = 2/116 (1%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+D+ I D + P+ + + F+++SG++R E++GRN R QG T+ ++ +
Sbjct: 146 AMDDSTAGIAIADAD-NDQPLTYVNDAFVEISGYNREEVLGRNCRFLQGEETDPESVQRL 204
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
+AI + V L NY+KDGT FW +++ V+ G TH++ Q + +R+
Sbjct: 205 HDAIDAGETVSVELRNYRKDGTEFWNHLEIAPVY-DHTGELTHYIGFQSDVTARRQ 259
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 35/47 (74%)
Query: 263 DMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
D P+ Y +DAF++++GY+R EV+G+NCRFL G +TD + ++ AI
Sbjct: 162 DQPLTYVNDAFVEISGYNREEVLGRNCRFLQGEETDPESVQRLHDAI 208
>gi|54296193|ref|YP_122562.1| hypothetical protein lpp0219 [Legionella pneumophila str. Paris]
gi|53749978|emb|CAH11366.1| hypothetical protein lpp0219 [Legionella pneumophila str. Paris]
Length = 292
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 72/123 (58%), Gaps = 7/123 (5%)
Query: 22 EALDELPDSFTITDP----SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRR 77
+ +DE D IT + +G +V+ ++ F +S + EIIG+ R+ QG TN+
Sbjct: 11 QLIDETSDMVIITKAEPLDAPNGPEVVWVNKAFENISKYKANEIIGQTPRILQGKETNQN 70
Query: 78 TIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKE-DGRATHFVAVQVPIVSR 136
T+ I+EAI+ + I V+LLNY KDGTP+W+ K S+V+ ++ G + A++ I +
Sbjct: 71 TLKMIKEAIKAQTNINVDLLNYTKDGTPYWI--KFSIVYLRDGQGNLCYLGAIEKDISAI 128
Query: 137 KHM 139
K++
Sbjct: 129 KNL 131
>gi|448432903|ref|ZP_21585720.1| PAS/PAC domain-containing protein [Halorubrum tebenquichense DSM
14210]
gi|445686678|gb|ELZ38988.1| PAS/PAC domain-containing protein [Halorubrum tebenquichense DSM
14210]
Length = 178
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 62/110 (56%), Gaps = 1/110 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A D+LP T+T P+ PIV+ +R F + +G++ E+ GRN R+FQGP + +
Sbjct: 59 AFDDLPLGLTLTGPAYRDTPIVYVNRWFRERTGYALDELRGRNPRLFQGPDPDPDARADF 118
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVP 132
REA+ + V L N ++DGTPF + + G + G TH+VA Q P
Sbjct: 119 REALSTWSTVTVELENRRRDGTPFANRVSLRPLSG-DAGTVTHWVAAQEP 167
>gi|334120631|ref|ZP_08494710.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Microcoleus vaginatus FGP-2]
gi|333456233|gb|EGK84868.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Microcoleus vaginatus FGP-2]
Length = 1121
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
Query: 35 DPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94
D IS I++A+ F +M+G+ EIIG+ +GP ++ + +IR + P+ V
Sbjct: 403 DSDISDPTIIYANEAFTQMTGYLPEEIIGKTPSCLRGPESDPTQVAKIRRSFSRREPLRV 462
Query: 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
L+NY+KDG+ +W+ S+ G TH+V+VQ I RK M +
Sbjct: 463 ELINYRKDGSTYWVELN-SVPIADTSGNVTHWVSVQRDITDRKRMEQA 509
>gi|358060258|dbj|GAA94012.1| hypothetical protein E5Q_00659 [Mixia osmundae IAM 14324]
Length = 884
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 61/104 (58%), Gaps = 2/104 (1%)
Query: 29 DSFTITDPSISGH-PIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIR 87
+SF ITD S + PIV + F+ ++G+SR E++G++ R QGP T+ ++ + AI
Sbjct: 478 ESFCITDASAGRYQPIVACTDAFVVLTGYSRTELVGKDCRFLQGPGTSNVSLGNLSRAIA 537
Query: 88 EERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
++P+ LLNY K G PFW ++ +F E G HF+ Q+
Sbjct: 538 GQKPVSELLLNYTKSGQPFWNFLRLLPLF-DETGACRHFLGHQI 580
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 264 MPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYPKKKSIYMEYV 323
P+V +DAF+ LTGY R E+VG++CRFL G T L +S AI+ + + Y
Sbjct: 491 QPIVACTDAFVVLTGYSRTELVGKDCRFLQGPGTSNVSLGNLSRAIAGQKPVSELLLNYT 550
Query: 324 R 324
+
Sbjct: 551 K 551
>gi|318041488|ref|ZP_07973444.1| sensory box/GGDEF domain/EAL domain protein [Synechococcus sp.
CB0101]
Length = 266
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 74/130 (56%), Gaps = 4/130 (3%)
Query: 10 QSFNNRYTLWVHEALDELPDSF--TITDP-SISGHPIVFASRGFLKMSGFSRAEIIGRNG 66
++ + Y L + LD D+ T+ +P + G IVFA++ L +G++ E++GR+
Sbjct: 113 EAPEDTYRLLLEAVLDTAQDAVLVTLAEPLNAPGPLIVFANQSLLDQTGYALNEVLGRSP 172
Query: 67 RMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHF 126
R+FQGP T R T +R A+ + P + +LNY++DG+ W+ K++ +G TH+
Sbjct: 173 RLFQGPDTCRETTGRLRRAMDQWEPSRMQVLNYRRDGSTCWIDLKVA-PLADPNGWHTHW 231
Query: 127 VAVQVPIVSR 136
V+VQ + R
Sbjct: 232 VSVQRDVSDR 241
>gi|448456274|ref|ZP_21595077.1| PAS/PAC domain-containing protein [Halorubrum lipolyticum DSM
21995]
gi|445812459|gb|EMA62452.1| PAS/PAC domain-containing protein [Halorubrum lipolyticum DSM
21995]
Length = 195
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
LD P T+ P+ PI++A+R F +G+S AE+ GRN R+ QGPRT+ + ++R
Sbjct: 71 LDTAPIGVTLCGPAYRDTPILYANRTFRDRTGYSLAELRGRNPRLLQGPRTDPAAVAKLR 130
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHF 126
EA+ + V++ N+++DGTPF + + G +DG TH+
Sbjct: 131 EAVSIWEAVTVDVWNHRRDGTPFLNRVSLRPLRG-DDGTITHW 172
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPY 312
L P D P++YA+ F TGY E+ G+N R L G TD + ++ A+S +
Sbjct: 79 TLCGPAYRDTPILYANRTFRDRTGYSLAELRGRNPRLLQGPRTDPAAVAKLREAVSIW 136
>gi|158853257|dbj|BAF91490.1| AUREO-like protein [Fucus distichus]
Length = 183
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 59/99 (59%), Gaps = 5/99 (5%)
Query: 6 GLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN 65
L+EQS + +AL SF +TDP + +PIV+AS F++++G+ R++++GRN
Sbjct: 89 ALLEQS-----DFLLVKALQSSQPSFCVTDPQLPDNPIVYASNTFIELTGYDRSQVLGRN 143
Query: 66 GRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGT 104
R QGP T+ + +IR+ I E + V L YK DGT
Sbjct: 144 CRFLQGPDTDPDAVAKIRKGIEEGKDTSVFLRQYKADGT 182
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 52/82 (63%), Gaps = 3/82 (3%)
Query: 231 CSLPGMGFISSSLYI---SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQ 287
C+ + S ++ +L + SF + DP LPD P+VYAS+ F++LTGYDR++V+G+
Sbjct: 83 CANQATALLEQSDFLLVKALQSSQPSFCVTDPQLPDNPIVYASNTFIELTGYDRSQVLGR 142
Query: 288 NCRFLNGVDTDTTVLYQVSIAI 309
NCRFL G DTD + ++ I
Sbjct: 143 NCRFLQGPDTDPDAVAKIRKGI 164
>gi|428311278|ref|YP_007122255.1| PAS domain-containing protein [Microcoleus sp. PCC 7113]
gi|428252890|gb|AFZ18849.1| PAS domain S-box [Microcoleus sp. PCC 7113]
Length = 1594
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 68/113 (60%), Gaps = 6/113 (5%)
Query: 29 DSFTITDPSISGHP---IVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+ P IV+ + F +M+G++ +++G+ R+ QG +T+R + IR A
Sbjct: 655 DAVVITEAEPIDEPGPRIVYVNPAFTRMTGYTLEDVLGKTPRILQGEKTDRTVLNRIRTA 714
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATHFVAVQVPIVSRK 137
++ + +V L+NY+KDG+ FW+ ++S+V E G TH+VAVQ I RK
Sbjct: 715 LQTWQLSQVELINYRKDGSQFWV--ELSIVPVADEKGWYTHWVAVQRDITERK 765
Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 262 PDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPY 312
P +VY + AF ++TGY +V+G+ R L G TD TVL ++ A+ +
Sbjct: 668 PGPRIVYVNPAFTRMTGYTLEDVLGKTPRILQGEKTDRTVLNRIRTALQTW 718
>gi|427401641|ref|ZP_18892713.1| diguanylate cyclase (GGDEF) domain-containing protein [Massilia
timonae CCUG 45783]
gi|425719353|gb|EKU82286.1| diguanylate cyclase (GGDEF) domain-containing protein [Massilia
timonae CCUG 45783]
Length = 770
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Query: 41 HPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYK 100
P++FA+R F + SG+ EI+GR+ RM GP T+ + I EA+ + P+ L+NY
Sbjct: 228 QPVIFANRAFERRSGYRADEIVGRSMRMLHGPDTDPAVVARIVEAMGKREPVSAELVNYS 287
Query: 101 KDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
K G P W+ +M + F E G TH V V I R+
Sbjct: 288 KTGEPCWVEIEM-VPFAGEGGPITHLVVVGRDITERR 323
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 265 PMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYPKKKSIYMEYV 323
P+++A+ AF + +GY +E+VG++ R L+G DTD V+ ++ A+ K++ + E V
Sbjct: 229 PVIFANRAFERRSGYRADEIVGRSMRMLHGPDTDPAVVARIVEAMG---KREPVSAELV 284
>gi|398333763|ref|ZP_10518468.1| histidine kinase sensor protein [Leptospira alexanderi serovar
Manhao 3 str. L 60]
Length = 1152
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 71/115 (61%), Gaps = 3/115 (2%)
Query: 24 LDELPDSFTITDPSIS--GHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
++++ DS +TD + G I+F + F KM+G+S+AE+IG+ R+ QGP TNR+T+ +
Sbjct: 24 VNQISDSILVTDAQLESPGPKIIFVNPAFCKMTGYSKAELIGQTPRILQGPLTNRKTMRD 83
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
++ ++ + + +NYKKDG+P+ + + +S + G+ F+++Q I +
Sbjct: 84 LKRSLTQGKDFSGETINYKKDGSPYNVEWHISAI-RDSSGKILCFISIQRDITEK 137
Score = 38.5 bits (88), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 240 SSSLY-ISLGRIKQSFVLIDPHL--PDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG 294
S LY I + +I S ++ D L P +++ + AF K+TGY + E++GQ R L G
Sbjct: 16 SHELYEILVNQISDSILVTDAQLESPGPKIIFVNPAFCKMTGYSKAELIGQTPRILQG 73
>gi|348029074|ref|YP_004871760.1| PAS/PAC sensor protein [Glaciecola nitratireducens FR1064]
gi|347946417|gb|AEP29767.1| putative PAS/PAC sensor protein [Glaciecola nitratireducens FR1064]
Length = 408
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 62/117 (52%), Gaps = 4/117 (3%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT---NRRTI 79
A+D + TI+D P++F + GF +G+ E++G+N R QGP N +
Sbjct: 19 AIDGAKEGITISDMKDPQRPLIFVNEGFEYTTGYQHQEVLGKNCRFLQGPHKDPDNDLPL 78
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
E+++A+ + +P V L NY+K G FW ++ +F +D THFV VQ + +
Sbjct: 79 SELKQALDQAKPCTVLLKNYRKSGELFWNRLSLTPIF-DDDKSLTHFVGVQTDVTAE 134
Score = 44.7 bits (104), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
L +++ K+ + D P P+++ ++ F TGY EV+G+NCRFL G D
Sbjct: 16 LELAIDGAKEGITISDMKDPQRPLIFVNEGFEYTTGYQHQEVLGKNCRFLQGPHKD 71
>gi|448500085|ref|ZP_21611564.1| histidine kinase [Halorubrum coriense DSM 10284]
gi|445696807|gb|ELZ48886.1| histidine kinase [Halorubrum coriense DSM 10284]
Length = 510
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 66/118 (55%), Gaps = 3/118 (2%)
Query: 21 HEALDELPDSFTITDPSISG-HPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+A+DE P T+ + +P+V+ +R F +++G+ E++G + R QGP T +
Sbjct: 178 EQAMDEAPLGITLARATDGDDNPLVYCNRQFEELTGYG-DEVLGEDCRFLQGPDTGEESP 236
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
EIR A+ EERP+EV++LNY+ +G FW ++ + G T +V Q I RK
Sbjct: 237 AEIRAALDEERPVEVDILNYRANGQKFWNRLSIAPLRDAT-GEVTSYVGFQSDITERK 293
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 263 DMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
D P+VY + F +LTGY +EV+G++CRFL G DT ++ A+
Sbjct: 198 DNPLVYCNRQFEELTGYG-DEVLGEDCRFLQGPDTGEESPAEIRAAL 243
>gi|134095595|ref|YP_001100670.1| hypothetical protein HEAR2418 [Herminiimonas arsenicoxydans]
gi|133739498|emb|CAL62549.1| Hypothetical protein, PAS and GGDEF domain [Herminiimonas
arsenicoxydans]
Length = 313
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 1/115 (0%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+A+ E D I D HP++FA+ F ++SG+ +I+GRN R QG +R I
Sbjct: 9 QAVMESRDGILIADARAPDHPVIFANPAFEQLSGYDLEDILGRNCRFLQGTDQAQRNISI 68
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+ ++ + + V L NY+KDG+ FW +S VF + G THF+ +Q + +R
Sbjct: 69 LANSLEKGKHSIVTLRNYRKDGSLFWNELSISPVF-DQSGVLTHFIGIQKDVTAR 122
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 32/46 (69%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296
+ ++ D PD P+++A+ AF +L+GYD +++G+NCRFL G D
Sbjct: 15 RDGILIADARAPDHPVIFANPAFEQLSGYDLEDILGRNCRFLQGTD 60
>gi|336270302|ref|XP_003349910.1| hypothetical protein SMAC_00803 [Sordaria macrospora k-hell]
gi|380095299|emb|CCC06772.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 798
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 62/108 (57%), Gaps = 4/108 (3%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L ++F +TD +PIV AS GFL+M G+ R E++ +N R QG TN + IR AI
Sbjct: 291 LGNAFCLTDSWKPNNPIVSASEGFLRMFGYERQEVLQKNCRFMQGHSTNSDAVRRIRNAI 350
Query: 87 REERPIEVNLLNYKKDGTPFW-MLFKMSLVFGKEDGRATHFVAVQVPI 133
+ ++NY+KDGTPFW LF LV EDG +++ Q+ I
Sbjct: 351 FTGQEHTEVIVNYRKDGTPFWNFLFICPLV---EDGIVRYYLGGQINI 395
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 219 SQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG 278
SQ RL + P S S Y+ LG +F L D P+ P+V AS+ FL++ G
Sbjct: 263 SQFADRLRASLSVTQPSFSSPSKSTYLGLG---NAFCLTDSWKPNNPIVSASEGFLRMFG 319
Query: 279 YDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
Y+R EV+ +NCRF+ G T++ + ++ AI
Sbjct: 320 YERQEVLQKNCRFMQGHSTNSDAVRRIRNAI 350
>gi|52840410|ref|YP_094209.1| sensory box protein [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|378776114|ref|YP_005184543.1| sensory box (GGDEF/EAL domain) [Legionella pneumophila subsp.
pneumophila ATCC 43290]
gi|52627521|gb|AAU26262.1| sensory box (GGDEF/EAL domain) [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|364506920|gb|AEW50444.1| sensory box (GGDEF/EAL domain) [Legionella pneumophila subsp.
pneumophila ATCC 43290]
Length = 292
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 72/124 (58%), Gaps = 7/124 (5%)
Query: 22 EALDELPDSFTITDP----SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRR 77
+ +DE D IT + +G +V+ ++ F +S + EIIG+ R+ QG TN+
Sbjct: 11 QLIDETNDMVIITKAEPLDAPNGPEVVWVNKAFENISKYKANEIIGQTPRILQGKETNQN 70
Query: 78 TIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKE-DGRATHFVAVQVPIVSR 136
T+ I+EA++ + I V+LLNY KDGTP+W+ F S+V+ ++ G + A++ I +
Sbjct: 71 TLKMIKEALKAQTNINVDLLNYTKDGTPYWISF--SIVYLRDGQGNLCYLGAIEKDITAL 128
Query: 137 KHMR 140
K++
Sbjct: 129 KNLN 132
>gi|159044552|ref|YP_001533346.1| putative blue-light photoreceptor [Dinoroseobacter shibae DFL 12]
gi|157912312|gb|ABV93745.1| putative blue-light photoreceptor [Dinoroseobacter shibae DFL 12]
Length = 139
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Query: 25 DELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIRE 84
DE S +DPS +P+++ S FL +G++ E++GRN R QGP TN + IR+
Sbjct: 32 DEAEMSVVFSDPSQPDNPMIYVSDAFLVQTGYTLEEVLGRNCRFLQGPDTNPHAVEAIRQ 91
Query: 85 AIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
++ E +++LNY+KDG+ F ++ ++ E G F Q P+
Sbjct: 92 GLKAETRFTIDILNYRKDGSAFVNRLRIRPIYDPE-GNLMFFAGAQNPV 139
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV----- 305
+ S V DP PD PM+Y SDAFL TGY EV+G+NCRFL G DT+ + +
Sbjct: 35 EMSVVFSDPSQPDNPMIYVSDAFLVQTGYTLEEVLGRNCRFLQGPDTNPHAVEAIRQGLK 94
Query: 306 -----SIAISPYPKKKSIYMEYVRV 325
+I I Y K S ++ +R+
Sbjct: 95 AETRFTIDILNYRKDGSAFVNRLRI 119
>gi|428300671|ref|YP_007138977.1| multi-sensor hybrid histidine kinase [Calothrix sp. PCC 6303]
gi|428237215|gb|AFZ03005.1| multi-sensor hybrid histidine kinase [Calothrix sp. PCC 6303]
Length = 1595
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 65/113 (57%), Gaps = 5/113 (4%)
Query: 29 DSFTITDPS----ISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIRE 84
D+ IT+ +G IV+ + F KM+G+S ++IG+ R+ QG ++R + +IR
Sbjct: 454 DAIVITESEPIDITNGPKIVYVNEAFCKMTGYSLQDVIGKTPRILQGKNSDRIALKKIRN 513
Query: 85 AIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
A+ + + V ++NY+KDGT +W+ + + K G TH+VA++ I RK
Sbjct: 514 ALESWQSVNVEMINYRKDGTEYWVEINIVPIADK-SGWFTHWVAIERDITERK 565
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 266 MVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYPKKKSIYMEYV 323
+VY ++AF K+TGY +V+G+ R L G ++D L ++ A+ + +S+ +E +
Sbjct: 472 IVYVNEAFCKMTGYSLQDVIGKTPRILQGKNSDRIALKKIRNALESW---QSVNVEMI 526
>gi|226354940|ref|YP_002784680.1| response regulator CheY [Deinococcus deserti VCD115]
gi|226316930|gb|ACO44926.1| putative response regulator, CheY, Guanylate cyclase, GGDEF domain
with PAS/PAC sensor and Response Regulator Receiver
modulation [Deinococcus deserti VCD115]
Length = 448
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 59/96 (61%), Gaps = 1/96 (1%)
Query: 41 HPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYK 100
HP+V+ + F +++G++ +EI+G++ R+ QG T+ ++ I EAI +P ++ +LNY+
Sbjct: 179 HPVVYCNPAFERLTGYTSSEILGQSWRVLQGEHTDPDALVGIYEAIEAGKPTDLVMLNYR 238
Query: 101 KDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
KDG+ FW + + +E+ THF+ V + R
Sbjct: 239 KDGSSFWSALNLGPIRNEENA-VTHFIGVHTDVTDR 273
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 263 DMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYPKKKSIYMEY 322
+ P+VY + AF +LTGY +E++GQ+ R L G TD L + AI + + Y
Sbjct: 178 EHPVVYCNPAFERLTGYTSSEILGQSWRVLQGEHTDPDALVGIYEAIEAGKPTDLVMLNY 237
>gi|258654953|ref|YP_003204109.1| PAS/PAC sensor protein [Nakamurella multipartita DSM 44233]
gi|258558178|gb|ACV81120.1| putative PAS/PAC sensor protein [Nakamurella multipartita DSM
44233]
Length = 149
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%)
Query: 42 PIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKK 101
P+V+A+ F +M+G++ EI+G N R QGP T+R + + EAIR I V + NY++
Sbjct: 43 PLVYANESFQRMTGYAPEEILGHNCRFLQGPDTDRAQVRRLHEAIRRHTDISVIIRNYRR 102
Query: 102 DGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
DG+ FW +S + THF+ Q+ +
Sbjct: 103 DGSWFWNKVSISPIHEPGSDEVTHFIGTQIDVT 135
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%)
Query: 263 DMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYPKKKSIYMEY 322
D P+VYA+++F ++TGY E++G NCRFL G DTD + ++ AI + I Y
Sbjct: 41 DAPLVYANESFQRMTGYAPEEILGHNCRFLQGPDTDRAQVRRLHEAIRRHTDISVIIRNY 100
Query: 323 VR 324
R
Sbjct: 101 RR 102
>gi|296131526|ref|YP_003638776.1| putative PAS/PAC sensor protein [Cellulomonas flavigena DSM 20109]
gi|296023341|gb|ADG76577.1| putative PAS/PAC sensor protein [Cellulomonas flavigena DSM 20109]
Length = 570
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L P T++DP + G P+V+ + F +++G++ E+ GRN R Q T+ I +R
Sbjct: 26 LQAAPLPMTVSDPRVPGDPVVWVNAAFTRLTGYTAEEVRGRNCRFLQCADTDPEAIHRLR 85
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135
A+ ++V LLN +KDG+PFW ++ + G+ H V VQV + +
Sbjct: 86 TALAHGDDVQVVLLNVRKDGSPFWNQLAITQLR-DATGQVVHRVGVQVDVTA 136
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 35/53 (66%)
Query: 258 DPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
DP +P P+V+ + AF +LTGY EV G+NCRFL DTD ++++ A++
Sbjct: 37 DPRVPGDPVVWVNAAFTRLTGYTAEEVRGRNCRFLQCADTDPEAIHRLRTALA 89
>gi|54293173|ref|YP_125588.1| hypothetical protein lpl0219 [Legionella pneumophila str. Lens]
gi|53753005|emb|CAH14448.1| hypothetical protein lpl0219 [Legionella pneumophila str. Lens]
Length = 292
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 73/123 (59%), Gaps = 7/123 (5%)
Query: 22 EALDELPDSFTITDP----SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRR 77
+ +DE D IT + +G +V+ ++ F K+S + EIIG+ R+ QG T++
Sbjct: 11 QLIDETSDMVIITKAEPLDAPNGPEVVWVNKAFEKISKYKANEIIGQTPRILQGKETDQN 70
Query: 78 TIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKE-DGRATHFVAVQVPIVSR 136
T+ I+EAI+ + I V+LLNY KDGTP+W+ F S+V+ ++ G + A++ I +
Sbjct: 71 TLKMIKEAIKAQMNINVDLLNYTKDGTPYWINF--SIVYLRDGQGNLCYLGAIEKDISAI 128
Query: 137 KHM 139
K++
Sbjct: 129 KNL 131
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 262 PDMP-MVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISP 311
P+ P +V+ + AF K++ Y NE++GQ R L G +TD L + AI
Sbjct: 31 PNGPEVVWVNKAFEKISKYKANEIIGQTPRILQGKETDQNTLKMIKEAIKA 81
>gi|390959172|ref|YP_006422929.1| PAS domain-containing protein [Terriglobus roseus DSM 18391]
gi|390414090|gb|AFL89594.1| PAS domain S-box [Terriglobus roseus DSM 18391]
Length = 667
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 72/133 (54%), Gaps = 6/133 (4%)
Query: 2 DSQLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHP---IVFASRGFLKMSGFSR 58
D Q L + N + A+++ D F IT+ P IV+ ++ F KM+G++
Sbjct: 163 DVQRQLSAERTENDLMRLLFAAVEKAEDVFLITEAEPIDQPGPRIVYVNQAFEKMTGYTA 222
Query: 59 AEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLV-FG 117
E++G+ R+ QGPRT+R + IR A+ +P+ + NY+KDG+ F +S+V
Sbjct: 223 DEVVGKTPRILQGPRTDRAALDRIRTALSSWKPVREEMTNYRKDGSEF--TVDLSIVPIA 280
Query: 118 KEDGRATHFVAVQ 130
E G TH++A+Q
Sbjct: 281 DEKGWYTHWMAIQ 293
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMP---MVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
L+ ++ + + F++ + D P +VY + AF K+TGY +EVVG+ R L G TD
Sbjct: 181 LFAAVEKAEDVFLITEAEPIDQPGPRIVYVNQAFEKMTGYTADEVVGKTPRILQGPRTDR 240
Query: 300 TVLYQVSIAISPY 312
L ++ A+S +
Sbjct: 241 AALDRIRTALSSW 253
>gi|449304795|gb|EMD00802.1| hypothetical protein BAUCODRAFT_61939 [Baudoinia compniacensis UAMH
10762]
Length = 580
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ E + L + + +TDPS+ +PIV+AS F + + R +IGRN R QGP+++ T+
Sbjct: 177 MRELVPSLAEVYCVTDPSLPDNPIVYASEEFYNTTQYGRDYVIGRNCRFLQGPKSSNSTV 236
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+ EA+ + I +LNY++DG+PF L ++ ++ + G+ +F+ Q+
Sbjct: 237 RRLIEALTTGQEICETILNYRRDGSPFMNLLMIAPLYDNK-GQVRYFLGCQI 287
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 39/61 (63%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ + + + DP LPD P+VYAS+ F T Y R+ V+G+NCRFL G + + + ++ A+
Sbjct: 184 LAEVYCVTDPSLPDNPIVYASEEFYNTTQYGRDYVIGRNCRFLQGPKSSNSTVRRLIEAL 243
Query: 310 S 310
+
Sbjct: 244 T 244
>gi|307608984|emb|CBW98396.1| hypothetical protein LPW_02481 [Legionella pneumophila 130b]
Length = 292
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 73/123 (59%), Gaps = 7/123 (5%)
Query: 22 EALDELPDSFTITDP----SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRR 77
+ +DE D IT + +G +V+ ++ F K+S + EIIG+ R+ QG T++
Sbjct: 11 QLIDETSDMVIITKAEPLDAPNGPEVVWVNKAFEKISKYKANEIIGQTPRILQGKETDQN 70
Query: 78 TIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKE-DGRATHFVAVQVPIVSR 136
T+ I+EAI+ + I V+LLNY KDGTP+W+ F S+V+ ++ G + A++ I +
Sbjct: 71 TLKMIKEAIKAQMNINVDLLNYTKDGTPYWINF--SIVYLRDGQGNLCYLGAIEKDISAI 128
Query: 137 KHM 139
K++
Sbjct: 129 KNL 131
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 262 PDMP-MVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISP 311
P+ P +V+ + AF K++ Y NE++GQ R L G +TD L + AI
Sbjct: 31 PNGPEVVWVNKAFEKISKYKANEIIGQTPRILQGKETDQNTLKMIKEAIKA 81
>gi|154291032|ref|XP_001546103.1| hypothetical protein BC1G_15404 [Botryotinia fuckeliana B05.10]
Length = 697
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 17 TLWVH--EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
TL H EA + L + F +TDPS +PIVFAS F + + + + ++GRN R QGP+T
Sbjct: 284 TLPAHLREASEGLAEVFCLTDPSRPDNPIVFASEEFHRTTQYGMSYVLGRNCRFLQGPKT 343
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
N ++ IRE I + LNY++DG+PF L M G +F+ QV I
Sbjct: 344 NPFSVRRIREKIEAGQEHCETFLNYRRDGSPFMNLL-MCAPLCDSRGTIRYFIGAQVDI 401
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ + F L DP PD P+V+AS+ F + T Y + V+G+NCRFL G T+ + ++ I
Sbjct: 296 LAEVFCLTDPSRPDNPIVFASEEFHRTTQYGMSYVLGRNCRFLQGPKTNPFSVRRIREKI 355
Query: 310 SPYPKKKSIYMEYVR 324
+ ++ Y R
Sbjct: 356 EAGQEHCETFLNYRR 370
>gi|378732980|gb|EHY59439.1| non-specific serine/threonine protein kinase [Exophiala
dermatitidis NIH/UT8656]
Length = 658
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ EA D L + F +TDP+ +PIVFAS F + + + + ++GRN R QGP TN ++
Sbjct: 262 LREASDGLAEVFCLTDPARHDNPIVFASEEFNRTTQYGLSYVLGRNCRFLQGPMTNPHSV 321
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
++EAI+ + + LLNY++DG+PF L M G +++ QV
Sbjct: 322 RRLKEAIQAGKQHQEVLLNYRRDGSPFVNLL-MVAPLADTRGVVRYYIGAQV 372
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%)
Query: 237 GFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296
G +S L + + + F L DP D P+V+AS+ F + T Y + V+G+NCRFL G
Sbjct: 256 GSLSQELREASDGLAEVFCLTDPARHDNPIVFASEEFNRTTQYGLSYVLGRNCRFLQGPM 315
Query: 297 TDTTVLYQVSIAISPYPKKKSIYMEYVR 324
T+ + ++ AI + + + + Y R
Sbjct: 316 TNPHSVRRLKEAIQAGKQHQEVLLNYRR 343
>gi|427730175|ref|YP_007076412.1| PAS domain-containing protein [Nostoc sp. PCC 7524]
gi|427366094|gb|AFY48815.1| PAS domain S-box [Nostoc sp. PCC 7524]
Length = 1712
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 93/189 (49%), Gaps = 27/189 (14%)
Query: 3 SQLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEII 62
+ L L+E++ R AL + I D ++ +P+++ + F +++G+S ++I
Sbjct: 432 TDLKLVEETLRLR-----ERALAATNNGIVIADARLANNPVIYVNSAFEQITGYSATDVI 486
Query: 63 GRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGR 122
G+N R Q T++ + ++R A++ + ++ L NY+KDG+ FW +S ++ E G
Sbjct: 487 GQNCRFLQSTDTDQPALQKLRLALKSGKDCQLILRNYRKDGSLFWNELSISPIY-DETGT 545
Query: 123 ATHFVAVQVPIVSRK----HMRNSGMSYSE---------------DGGGSRLREIVFGSC 163
THF+ +Q + R+ +R ++++ D + +R +FG
Sbjct: 546 LTHFLGIQSDVSDRQTAEMALRRQALTFANIYDAVIITDLKGQILDWNPAAVR--IFGYT 603
Query: 164 RREVCSDSL 172
+ E+C S+
Sbjct: 604 KAEICGQSV 612
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
+L V+ D L + P++Y + AF ++TGY +V+GQNCRFL DTD L ++
Sbjct: 447 ALAATNNGIVIADARLANNPVIYVNSAFEQITGYSATDVIGQNCRFLQSTDTDQPALQKL 506
Query: 306 SIAI 309
+A+
Sbjct: 507 RLAL 510
>gi|322433264|ref|YP_004210485.1| PAS/PAC sensor signal transduction histidine kinase [Granulicella
tundricola MP5ACTX9]
gi|321165656|gb|ADW71358.1| PAS/PAC sensor signal transduction histidine kinase [Granulicella
tundricola MP5ACTX9]
Length = 519
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
++ ++ PIV+ + F +M+G+SRAE+ GRN R +G ++ + +R+A++ R
Sbjct: 164 ISVASATLPDLPIVYVNPAFEEMTGYSRAEVQGRNCRFLEGNERSQPALAIVRDALKNRR 223
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
L N++KDGTPFW +S + E G+ TH+V +Q + R + ++
Sbjct: 224 KGLAVLKNFRKDGTPFWNELSLSPIMDDE-GQLTHYVGIQTDVTQRVELESA 274
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 32/49 (65%)
Query: 261 LPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
LPD+P+VY + AF ++TGY R EV G+NCRFL G + L V A+
Sbjct: 171 LPDLPIVYVNPAFEEMTGYSRAEVQGRNCRFLEGNERSQPALAIVRDAL 219
>gi|163796611|ref|ZP_02190570.1| diguanylate cyclase with PAS/PAC sensor [alpha proteobacterium
BAL199]
gi|159178171|gb|EDP62716.1| diguanylate cyclase with PAS/PAC sensor [alpha proteobacterium
BAL199]
Length = 132
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 64/103 (62%), Gaps = 5/103 (4%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88
DS ITD S+ G I++A++ F K++G +EIIG+ R+ QGP T+ + I + +A++
Sbjct: 28 DSVLITDASVEGK-IIYANKSFKKLTGHDTSEIIGKTPRILQGPGTDSKVIARLSDALKS 86
Query: 89 ERPIEVNLLNYKKDGTPFWMLFK-MSLVFGKEDGRATHFVAVQ 130
E +NYKKDGTPF M ++ + + GK + T +VA+Q
Sbjct: 87 GGKFEGKAINYKKDGTPFIMYWRVLPIRVGK---KITAWVAIQ 126
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISP--- 311
VLI + ++YA+ +F KLTG+D +E++G+ R L G TD+ V+ ++S A+
Sbjct: 30 VLITDASVEGKIIYANKSFKKLTGHDTSEIIGKTPRILQGPGTDSKVIARLSDALKSGGK 89
Query: 312 -------YPKKKSIYMEYVRV 325
Y K + ++ Y RV
Sbjct: 90 FEGKAINYKKDGTPFIMYWRV 110
>gi|255318505|ref|ZP_05359738.1| two-component response regulator [Acinetobacter radioresistens
SK82]
gi|262378733|ref|ZP_06071890.1| two-component response regulator [Acinetobacter radioresistens
SH164]
gi|255304497|gb|EET83681.1| two-component response regulator [Acinetobacter radioresistens
SK82]
gi|262300018|gb|EEY87930.1| two-component response regulator [Acinetobacter radioresistens
SH164]
Length = 849
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
+D P ITD S I F + FLK G++ E+IGRN QG TN + +
Sbjct: 302 VDASPSGMFITDAS-ENMVISFVNPAFLKQVGYTEEEVIGRNYNFLQGRDTNLEQLALFK 360
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+A++E++ +++ L NY +DG+ FW + + +DG+ THF+ +Q I ++
Sbjct: 361 QAVKEQKDVQITLKNYCRDGSWFWNRLMLGPILD-QDGKCTHFLGIQEDITQQR 413
>gi|406597944|ref|YP_006749074.1| response regulator containing a CheY-like receiver domain and a
GGDEF domain [Alteromonas macleodii ATCC 27126]
gi|406375265|gb|AFS38520.1| response regulator containing a CheY-like receiver domain and a
GGDEF domain [Alteromonas macleodii ATCC 27126]
Length = 491
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Query: 43 IVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKD 102
I++A+ K + +S E++G R+FQG T++ + + IR+++ ++RP LLNY K
Sbjct: 163 IIYANEALCKHTEYSLEELLGETPRIFQGALTDKASTLRIRQSLIDQRPCTETLLNYTKS 222
Query: 103 GTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
GTPFW+ + E G THF AVQ + RK
Sbjct: 223 GTPFWVQMNI-FPLTNEFGEVTHFAAVQRNVSERK 256
>gi|87310159|ref|ZP_01092291.1| sensory box sensor histidine kinase/response regulator
[Blastopirellula marina DSM 3645]
gi|87287149|gb|EAQ79051.1| sensory box sensor histidine kinase/response regulator
[Blastopirellula marina DSM 3645]
Length = 845
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 58/93 (62%), Gaps = 2/93 (2%)
Query: 45 FASRGFLKMSGFSRAEIIGRN-GRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDG 103
+ + F +++G+S E IGR G + QGP TN+ TI +R A++++ + LLNY KDG
Sbjct: 343 WVNNAFTQLTGYSAEEAIGRKPGSLLQGPETNQETIEIVRRALQKQEQVSAELLNYAKDG 402
Query: 104 TPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+W+ ++ VF +E GR ++F+A Q+ I +
Sbjct: 403 HSYWIALEIEPVFDQE-GRLSNFIATQIDITDQ 434
>gi|451852400|gb|EMD65695.1| hypothetical protein COCSADRAFT_139956 [Cochliobolus sativus
ND90Pr]
Length = 853
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 62/115 (53%), Gaps = 1/115 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ EA + L + F +TDPS + +PI+FAS F + + + IGRN R QGP+TNR ++
Sbjct: 422 LREASEGLAEVFCLTDPSRADNPIIFASEEFHRTTQYGVNYAIGRNCRFLQGPKTNRNSV 481
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
A RE + LNY++DG+PF L M+ G +F+ Q+ +
Sbjct: 482 ARFGAAAREGKDHSEVFLNYRRDGSPFMNLL-MTAPLCDSRGTVRYFIGAQIDVT 535
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 7/142 (4%)
Query: 186 TGLEIEDSCEASDLEKRKAATAI---DNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSS 242
T E + AS EK K A I D++ + +TH KR + G +
Sbjct: 366 TETEARTTVNASLEEKAKQAFDILVRDDLPAFITHVFAQVASSSIAKRVT----GNLPPM 421
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L + + + F L DP D P+++AS+ F + T Y N +G+NCRFL G T+ +
Sbjct: 422 LREASEGLAEVFCLTDPSRADNPIIFASEEFHRTTQYGVNYAIGRNCRFLQGPKTNRNSV 481
Query: 303 YQVSIAISPYPKKKSIYMEYVR 324
+ A +++ Y R
Sbjct: 482 ARFGAAAREGKDHSEVFLNYRR 503
>gi|427706207|ref|YP_007048584.1| multi-sensor signal transduction histidine kinase [Nostoc sp. PCC
7107]
gi|427358712|gb|AFY41434.1| multi-sensor signal transduction histidine kinase [Nostoc sp. PCC
7107]
Length = 1697
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 62/114 (54%), Gaps = 1/114 (0%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88
+ I D SI PI++ + F KM+G+S AE+IG + R+FQ + + E+ A++
Sbjct: 1210 NGIIIADASIPNGPIIYVNPAFEKMTGYSAAEVIGTSFRLFQRADIEQSGLQELNTAMQV 1269
Query: 89 ERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R V L NY+K+G+ +W +S V+ E G TH++ +Q I RK +
Sbjct: 1270 GRDCTVTLRNYRKNGSLWWNELNISPVYDTE-GILTHYIGIQTDITERKQTETA 1322
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 70/126 (55%), Gaps = 8/126 (6%)
Query: 29 DSFTITDPSISG---HP-IVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIRE 84
DS IT+ IS P IV+A++ F +M+G++ E+IG+ R G +T R + +
Sbjct: 157 DSILITEAHISNGQIEPRIVYANQAFTQMTGYTLEEVIGQTPRFSHGEKTCRVEMKRLFA 216
Query: 85 AIREERPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATHFVAVQVPIVSRKHMRNSG 143
A++ PI LL+Y+KDG+ +W+ M+LV THFVA+ I RK + +
Sbjct: 217 AVQAGLPIRTELLSYRKDGSTYWV--DMNLVPIKNAQEHITHFVAIHRNITERK-LTEAA 273
Query: 144 MSYSED 149
+ ++E+
Sbjct: 274 LQWNEE 279
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 33/57 (57%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
++ D +P+ P++Y + AF K+TGY EV+G + R D + + L +++ A+
Sbjct: 1212 IIIADASIPNGPIIYVNPAFEKMTGYSAAEVIGTSFRLFQRADIEQSGLQELNTAMQ 1268
Score = 37.7 bits (86), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 11/99 (11%)
Query: 210 NILSVLTHYSQLTGRLVCGKRCSLPGMGFISSS-------LYISLGRIKQSFVLIDPHLP 262
NIL +L QL G + C +S L ++ S ++ + H+
Sbjct: 108 NILPILDEADQLIGTVTPESICQALEQSDENSQEKERLRLLESAVVNANDSILITEAHIS 167
Query: 263 DMPM----VYASDAFLKLTGYDRNEVVGQNCRFLNGVDT 297
+ + VYA+ AF ++TGY EV+GQ RF +G T
Sbjct: 168 NGQIEPRIVYANQAFTQMTGYTLEEVIGQTPRFSHGEKT 206
>gi|124002838|ref|ZP_01687690.1| multi-sensor Hybrid Histidine Kinase, putative [Microscilla marina
ATCC 23134]
gi|123992066|gb|EAY31453.1| multi-sensor Hybrid Histidine Kinase, putative [Microscilla marina
ATCC 23134]
Length = 1746
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 73/145 (50%), Gaps = 21/145 (14%)
Query: 21 HEALD-----------ELPDSFTITDPSISGHP---IVFASRGFLKMSGFSRAEIIGRNG 66
H+ALD L D+ +T+ P I++ + F KM+G++ EI G
Sbjct: 428 HKALDRHLQLQEAIIHNLNDAILVTEAEPIDKPGPRILYVNAAFEKMTGYAIGEIKGETP 487
Query: 67 RMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATH 125
R+ QG +T+R + ++R A PIEV L+NY K G FW+ +S+V E G TH
Sbjct: 488 RILQGAKTDRAVLDKMRSAFENWEPIEVELINYTKSGEEFWV--NISIVPIANETGWYTH 545
Query: 126 FVAVQVPIVSRK----HMRNSGMSY 146
+V++Q I RK +R S + Y
Sbjct: 546 WVSIQKDITERKKQEEKIRASEIKY 570
>gi|347835005|emb|CCD49577.1| hypothetical protein [Botryotinia fuckeliana]
Length = 873
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 17 TLWVH--EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
TL H EA + L + F +TDPS +PIVFAS F + + + + ++GRN R QGP+T
Sbjct: 460 TLPAHLREASEGLAEVFCLTDPSRPDNPIVFASEEFHRTTQYGMSYVLGRNCRFLQGPKT 519
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
N ++ IRE I + LNY++DG+PF L M G +F+ QV I
Sbjct: 520 NPFSVRRIREKIEAGQEHCETFLNYRRDGSPFMNLL-MCAPLCDSRGTIRYFIGAQVDI 577
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ + F L DP PD P+V+AS+ F + T Y + V+G+NCRFL G T+ + ++ I
Sbjct: 472 LAEVFCLTDPSRPDNPIVFASEEFHRTTQYGMSYVLGRNCRFLQGPKTNPFSVRRIREKI 531
Query: 310 SPYPKKKSIYMEYVR 324
+ ++ Y R
Sbjct: 532 EAGQEHCETFLNYRR 546
>gi|170077969|ref|YP_001734607.1| sensory box/GGDEF family protein [Synechococcus sp. PCC 7002]
gi|169885638|gb|ACA99351.1| sensory box/GGDEF family protein [Synechococcus sp. PCC 7002]
Length = 780
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 5/120 (4%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+H +++ + ITD +PI++ ++GF K++G++ EI+GRN QG + +
Sbjct: 362 LHRSINVIRQGVVITDAREENNPIIYVNQGFEKITGYTADEILGRNCNFLQGRDRRQPPL 421
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED--GRATHFVAVQVPIVSRK 137
E+R AI + + V L NY+K+G PFW +F D G THF+ +Q I K
Sbjct: 422 TELRAAILKGQECNVTLRNYRKNGEPFWNALH---IFPVRDPAGYLTHFIGIQTDISHEK 478
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L+ S+ I+Q V+ D + P++Y + F K+TGY +E++G+NC FL G D L
Sbjct: 362 LHRSINVIRQGVVITDAREENNPIIYVNQGFEKITGYTADEILGRNCNFLQGRDRRQPPL 421
Query: 303 YQVSIAI 309
++ AI
Sbjct: 422 TELRAAI 428
>gi|313682758|ref|YP_004060496.1| pas sensor protein [Sulfuricurvum kujiense DSM 16994]
gi|313155618|gb|ADR34296.1| PAS sensor protein [Sulfuricurvum kujiense DSM 16994]
Length = 239
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 64/114 (56%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
E LD+ + TI+DPS +P+++ + F G+S EIIG+N R QG ++ + E
Sbjct: 114 EILDQSKNGITISDPSQPDNPVIYINHAFANAFGYSPDEIIGKNCRFLQGDDRDQPALEE 173
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135
+R+A++E+ + V L NY K G + +S VF K+ + +++ VQ + S
Sbjct: 174 LRKAMKEQTDVTVILRNYHKSGELIYNEVTISPVFDKKTHKLKYYIGVQKDVTS 227
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 247 LGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVS 306
L + K + DP PD P++Y + AF GY +E++G+NCRFL G D D L ++
Sbjct: 116 LDQSKNGITISDPSQPDNPVIYINHAFANAFGYSPDEIIGKNCRFLQGDDRDQPALEELR 175
Query: 307 IAI 309
A+
Sbjct: 176 KAM 178
>gi|167648510|ref|YP_001686173.1| signal transduction histidine kinase [Caulobacter sp. K31]
gi|167350940|gb|ABZ73675.1| signal transduction histidine kinase [Caulobacter sp. K31]
Length = 369
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 1/107 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TD S +PIVFA+ FL ++G+ E+IGRN R QG T+ + +R+A+ + +
Sbjct: 37 VTDARQSDNPIVFANDAFLALTGYDLDEVIGRNCRFLQGLETDPDQVDRLRQAVAQGEEV 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
+ LLNY+KDG+ FW +S V G E G +F I +K +
Sbjct: 97 ALELLNYRKDGSTFWNALYLSPVRG-ETGEVLYFFGTLRDISDQKRV 142
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 41/57 (71%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
++ D D P+V+A+DAFL LTGYD +EV+G+NCRFL G++TD + ++ A++
Sbjct: 35 MIVTDARQSDNPIVFANDAFLALTGYDLDEVIGRNCRFLQGLETDPDQVDRLRQAVA 91
>gi|448529587|ref|ZP_21620607.1| PAS/PAC domain-containing protein [Halorubrum hochstenium ATCC
700873]
gi|445708756|gb|ELZ60594.1| PAS/PAC domain-containing protein [Halorubrum hochstenium ATCC
700873]
Length = 184
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 61/110 (55%), Gaps = 1/110 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A D+LP T+T P+ PIV+ +R F + +G+ E+ GRN R+FQGP + +
Sbjct: 65 AFDDLPLGLTLTGPAYRDTPIVYVNRWFRERTGYPLDELRGRNPRLFQGPDPDPDARSDF 124
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVP 132
REA+ + V L N ++DGTPF + + G + G TH+VA Q P
Sbjct: 125 REALSTWSTVTVELENRRRDGTPFVNRVSLRPLSG-DAGTVTHWVAAQEP 173
>gi|448428817|ref|ZP_21584443.1| PAS/PAC domain-containing protein [Halorubrum terrestre JCM 10247]
gi|448510897|ref|ZP_21616110.1| PAS/PAC domain-containing protein [Halorubrum distributum JCM 9100]
gi|448523505|ref|ZP_21618804.1| PAS/PAC domain-containing protein [Halorubrum distributum JCM
10118]
gi|445675795|gb|ELZ28323.1| PAS/PAC domain-containing protein [Halorubrum terrestre JCM 10247]
gi|445695651|gb|ELZ47753.1| PAS/PAC domain-containing protein [Halorubrum distributum JCM 9100]
gi|445701322|gb|ELZ53305.1| PAS/PAC domain-containing protein [Halorubrum distributum JCM
10118]
Length = 188
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 63/117 (53%), Gaps = 8/117 (6%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTN------- 75
ALD+LP T+T P+ PIV+ +R F +G++ ++ GRN R+FQ P +
Sbjct: 59 ALDDLPLGLTLTGPAFRDTPIVYVNRWFRDWTGYAMEDLRGRNPRLFQAPDPDAEVRADF 118
Query: 76 RRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVP 132
R + REA+ + V + N + DGTPF L + +FG + G TH+VA Q P
Sbjct: 119 RDARADFREALSTWSRVTVEIRNRRSDGTPFTALVSLRPLFG-DAGTVTHWVAAQEP 174
>gi|407009016|gb|EKE24251.1| hypothetical protein ACD_6C00184G0004 [uncultured bacterium]
Length = 859
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 67/110 (60%), Gaps = 2/110 (1%)
Query: 28 PDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIR 87
P+S ITD S +V+ + FLK++G++ AE++G++ QGP T+ I +++A++
Sbjct: 309 PNSLFITDVS-EERLMVYVNPAFLKLTGYTAAEVLGQSCFFLQGPDTDPDQIALLKQAVK 367
Query: 88 EERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
E++ I+V + +Y KDG+ FW + +F + G THF+ +Q I ++
Sbjct: 368 EQKEIQVTIKSYCKDGSWFWNRLTIGPIF-DQTGTCTHFLGIQEDITQQR 416
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 25/33 (75%)
Query: 266 MVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
MVY + AFLKLTGY EV+GQ+C FL G DTD
Sbjct: 323 MVYVNPAFLKLTGYTAAEVLGQSCFFLQGPDTD 355
>gi|428319994|ref|YP_007117876.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Oscillatoria nigro-viridis PCC 7112]
gi|428243674|gb|AFZ09460.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Oscillatoria nigro-viridis PCC 7112]
Length = 1121
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
Query: 35 DPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94
D IS I++A+ F +M+G+ EIIG+ +GP ++ + +IR A P+ +
Sbjct: 403 DSDISDPTIIYANEAFTQMTGYLPEEIIGQTPSCLRGPESDPTQVAKIRCAFSRREPLRL 462
Query: 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
L+NY+KDG+ +W+ S+ G TH+V+VQ I RK M +
Sbjct: 463 ELINYRKDGSTYWVELN-SVPIADTSGNVTHWVSVQRDITERKRMEQA 509
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 258 DPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
D + D ++YA++AF ++TGY E++GQ L G ++D T + ++ A S
Sbjct: 403 DSDISDPTIIYANEAFTQMTGYLPEEIIGQTPSCLRGPESDPTQVAKIRCAFS 455
>gi|74317060|ref|YP_314800.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
[Thiobacillus denitrificans ATCC 25259]
gi|74056555|gb|AAZ96995.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
domains) with PAS/PAC and GAF sensor(s) [Thiobacillus
denitrificans ATCC 25259]
Length = 1059
Score = 75.5 bits (184), Expect = 3e-11, Method: Composition-based stats.
Identities = 36/99 (36%), Positives = 57/99 (57%), Gaps = 1/99 (1%)
Query: 39 SGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLN 98
+G IVF + F ++G+ R E++G++ R+ GP T+R + I EA+ +RP+ L+N
Sbjct: 51 AGPAIVFVNDAFEHITGYRRDEVLGKSVRLLHGPLTDRAEVRRIGEALENQRPVRSELVN 110
Query: 99 YKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
Y K G PFW+ + V +G TH VAV+ + RK
Sbjct: 111 YSKHGEPFWLELDVVPV-TDANGYYTHCVAVERDVTRRK 148
Score = 38.5 bits (88), Expect = 4.4, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 35/59 (59%)
Query: 266 MVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYPKKKSIYMEYVR 324
+V+ +DAF +TGY R+EV+G++ R L+G TD + ++ A+ +S + Y +
Sbjct: 55 IVFVNDAFEHITGYRRDEVLGKSVRLLHGPLTDRAEVRRIGEALENQRPVRSELVNYSK 113
>gi|344201766|ref|YP_004786909.1| multi-sensor signal transduction histidine kinase [Muricauda
ruestringensis DSM 13258]
gi|343953688|gb|AEM69487.1| multi-sensor signal transduction histidine kinase [Muricauda
ruestringensis DSM 13258]
Length = 848
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 64/117 (54%), Gaps = 1/117 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL+E+ + I++ + PI++ ++ F K +G++ E+IG+N Q ++ + I
Sbjct: 151 ALEEVGNGIVISNAQLKQFPIIYVNKAFEKNTGYTSEEVIGKNCNFLQLDDRQQQEVQII 210
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
EA+ + P V + NYKKDGT FW ++ V G THF+ +Q + RK++
Sbjct: 211 GEALSTQSPCHVEIRNYKKDGTLFWNELSITPVRDFH-GETTHFIGIQNDVTERKNL 266
Score = 44.3 bits (103), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFL 292
+L + V+ + L P++Y + AF K TGY EV+G+NC FL
Sbjct: 151 ALEEVGNGIVISNAQLKQFPIIYVNKAFEKNTGYTSEEVIGKNCNFL 197
>gi|257095066|ref|YP_003168707.1| putative PAS/PAC sensor protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257047590|gb|ACV36778.1| putative PAS/PAC sensor protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 143
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 71/126 (56%), Gaps = 3/126 (2%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+ LD + T++DP + +PIV+A++ F +SG+S+ E++GRN R QG + +
Sbjct: 17 QILDACVNGITLSDPDLPDNPIVYANKVFEDLSGYSQEEVVGRNCRFLQGDDREQEALTT 76
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
IR A+ ++ V L NY+K+G F+ + + +E G+ +++ VQ I + +R
Sbjct: 77 IRTALAKQESCVVTLRNYRKNGELFFNRLSIRPLVDRE-GKVIYYLGVQYDIT--EQLRA 133
Query: 142 SGMSYS 147
SG ++
Sbjct: 134 SGEDHA 139
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 40/74 (54%)
Query: 237 GFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296
G I L L L DP LPD P+VYA+ F L+GY + EVVG+NCRFL G D
Sbjct: 9 GLIPYVLTQILDACVNGITLSDPDLPDNPIVYANKVFEDLSGYSQEEVVGRNCRFLQGDD 68
Query: 297 TDTTVLYQVSIAIS 310
+ L + A++
Sbjct: 69 REQEALTTIRTALA 82
>gi|407920808|gb|EKG13988.1| PAS domain-containing protein [Macrophomina phaseolina MS6]
Length = 582
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L ++F +TDPS +PI+FAS F + + + IGRN R QGPRTN+ +I + +AI
Sbjct: 369 LAETFCLTDPSRKDNPIIFASEEFHRTTQYGVNYAIGRNCRFLQGPRTNKASIERLSQAI 428
Query: 87 REERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+E + L NY++DG+ F L M+ + + G+ +F+ Q+
Sbjct: 429 QEGKETNELLCNYRRDGSVFINLLMMAPLMDNK-GKVRYFIGSQI 472
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ ++F L DP D P+++AS+ F + T Y N +G+NCRFL G T+ + ++S AI
Sbjct: 369 LAETFCLTDPSRKDNPIIFASEEFHRTTQYGVNYAIGRNCRFLQGPRTNKASIERLSQAI 428
Query: 310 SPYPKKKSIYMEYVR 324
+ + Y R
Sbjct: 429 QEGKETNELLCNYRR 443
>gi|119493194|ref|ZP_01624069.1| hypothetical protein L8106_15744 [Lyngbya sp. PCC 8106]
gi|119452759|gb|EAW33936.1| hypothetical protein L8106_15744 [Lyngbya sp. PCC 8106]
Length = 990
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 80/152 (52%), Gaps = 6/152 (3%)
Query: 8 IEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGR 67
+E+ + Y + A++ + ITDP +PI++ + +G+ +EI+G+N R
Sbjct: 313 VERHRSEEYLHLLERAINSANNGIIITDPHQPDNPIIYFNTAVEHSTGYPASEIMGKNCR 372
Query: 68 MFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFV 127
QG N+ I IR AI ++ V L NY+KDG+ FW +S VF + G+ T+F+
Sbjct: 373 FLQGKDRNQPEINIIRAAISAKKECNVVLRNYRKDGSLFWNELFISPVFNNK-GKLTNFI 431
Query: 128 AVQVPIVSRKHMRNSGMSYSEDGGGSRLREIV 159
+Q I RK + + S++ RL++IV
Sbjct: 432 GIQKDISERKR-SEANLKKSQE----RLKKIV 458
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
++ DPH PD P++Y + A TGY +E++G+NCRFL G D + + + AIS
Sbjct: 337 IITDPHQPDNPIIYFNTAVEHSTGYPASEIMGKNCRFLQGKDRNQPEINIIRAAIS 392
>gi|326802470|ref|YP_004320289.1| PAS/PAC sensor signal transduction histidine kinase
[Sphingobacterium sp. 21]
gi|326553234|gb|ADZ81619.1| PAS/PAC sensor signal transduction histidine kinase
[Sphingobacterium sp. 21]
Length = 520
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 60/105 (57%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
ITD S +PIV+ ++ F +++G+SR E+IG N R QG N I+ A+ +P
Sbjct: 36 ITDCSQPDYPIVYCNKAFEELTGYSRNEVIGHNCRFLQGNDDNEEQKKVIKTALHLGQPC 95
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
E+ + NYKKDG+ FW ++ + +E+ T+++ VQ + K
Sbjct: 96 EIEIKNYKKDGSLFWNQLRLQPIRDEENN-VTYYIGVQNDVTRLK 139
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 45/85 (52%), Gaps = 10/85 (11%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD-------TTVLY 303
K V+ D PD P+VY + AF +LTGY RNEV+G NCRFL G D + T L+
Sbjct: 31 KVGVVITDCSQPDYPIVYCNKAFEELTGYSRNEVIGHNCRFLQGNDDNEEQKKVIKTALH 90
Query: 304 ---QVSIAISPYPKKKSIYMEYVRV 325
I I Y K S++ +R+
Sbjct: 91 LGQPCEIEIKNYKKDGSLFWNQLRL 115
>gi|163744962|ref|ZP_02152322.1| sensory box histidine kinase [Oceanibulbus indolifex HEL-45]
gi|161381780|gb|EDQ06189.1| sensory box histidine kinase [Oceanibulbus indolifex HEL-45]
Length = 354
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 69/127 (54%), Gaps = 1/127 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
ITDP++ +PIV+ + F ++G++ EI+G+N R QGP T R ++ +RE + + R
Sbjct: 49 ITDPTLPDNPIVYVNEAFTDLTGYTLDEIVGQNCRFLQGPETTRESVDTVREILVDRRVD 108
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSEDGGG 152
V ++NY+KDG+ F ++ + E G +F Q+ + R+ ++D
Sbjct: 109 TVEIVNYRKDGSRFLNALQLGPI-NDEAGNLAYFFGSQLDVSERRQAERERRELADDELL 167
Query: 153 SRLREIV 159
RLR IV
Sbjct: 168 HRLRNIV 174
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 32/42 (76%)
Query: 256 LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDT 297
+ DP LPD P+VY ++AF LTGY +E+VGQNCRFL G +T
Sbjct: 49 ITDPTLPDNPIVYVNEAFTDLTGYTLDEIVGQNCRFLQGPET 90
>gi|396467456|ref|XP_003837941.1| hypothetical protein LEMA_P119880.1 [Leptosphaeria maculans JN3]
gi|312214506|emb|CBX94497.1| hypothetical protein LEMA_P119880.1 [Leptosphaeria maculans JN3]
Length = 815
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ EA + L + F ++DPS S +PI+FAS F + + + + IGRN R QGP+TNR ++
Sbjct: 381 LREASEGLAEVFCLSDPSRSDNPIIFASEEFHRTTQYGVSYAIGRNCRFLQGPKTNRSSV 440
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
++A E + LNY++DG+PF L ++ + G +F+ Q+
Sbjct: 441 ARFKQAAIEGKDHSEVFLNYRRDGSPFMNLLMIAPLLDSR-GNLRYFIGAQI 491
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 4/116 (3%)
Query: 209 DNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVY 268
D++ + +TH + KR + G + L + + + F L DP D P+++
Sbjct: 351 DDLPAFITHVFVQVVSVSIAKRVT----GALPPLLREASEGLAEVFCLSDPSRSDNPIIF 406
Query: 269 ASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYPKKKSIYMEYVR 324
AS+ F + T Y + +G+NCRFL G T+ + + + A +++ Y R
Sbjct: 407 ASEEFHRTTQYGVSYAIGRNCRFLQGPKTNRSSVARFKQAAIEGKDHSEVFLNYRR 462
>gi|456013735|gb|EMF47372.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
PAS/PAC sensor(s) [Planococcus halocryophilus Or1]
Length = 725
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 83/176 (47%), Gaps = 15/176 (8%)
Query: 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRT 78
W+ + SF + + I PIV+A+ F KM G+S E +GRNGR G +T+++
Sbjct: 16 WLRRLGVKFHTSFLVINSEIESQPIVYANEAFFKMIGYSEEETLGRNGRFLHGEKTSQKA 75
Query: 79 IMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMS-LVFGKEDGRATHFVAVQVPIVSRK 137
I I ++NY+K+GTPFW + L F +++ + T + +Q I RK
Sbjct: 76 SENIHACIASGEAGIFEIVNYRKNGTPFWNELSIQPLTFPEKNLKFT--LLLQRDITERK 133
Query: 138 HMRNSGM------SYSEDGGGSRLREIVFGSCRREVCSDSLLDLDR--VLALDSDD 185
R M +Y + G +L I+ C C +D + VL +D+D+
Sbjct: 134 --RTEAMNTLQKQTYKKIESGHKLNSILQNICH--ACELFFIDGAKCTVLLIDNDE 185
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 249 RIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDT 297
+ SF++I+ + P+VYA++AF K+ GY E +G+N RFL+G T
Sbjct: 23 KFHTSFLVINSEIESQPIVYANEAFFKMIGYSEEETLGRNGRFLHGEKT 71
>gi|434394681|ref|YP_007129628.1| PAS/PAC sensor hybrid histidine kinase [Gloeocapsa sp. PCC 7428]
gi|428266522|gb|AFZ32468.1| PAS/PAC sensor hybrid histidine kinase [Gloeocapsa sp. PCC 7428]
Length = 574
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 70/123 (56%), Gaps = 7/123 (5%)
Query: 23 ALDELPDSFTIT----DPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRT 78
A+ + DS IT DP G IV+ + F +M+G++ E++G+ R+ QG TNR+
Sbjct: 62 AVQQSRDSILITTEKLDPP--GPEIVYVNPAFSQMTGYAIEEVLGKTPRLLQGANTNRKV 119
Query: 79 IMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
+ ++R+ + E P +NY KDGT F++ + ++ + + THF+A+Q I +RKH
Sbjct: 120 LKDLRKHLLEGIPFHGEAINYHKDGTEFFVEWNITPIRNI-NHSITHFIAIQRDITTRKH 178
Query: 139 MRN 141
M
Sbjct: 179 MEQ 181
>gi|159043684|ref|YP_001532478.1| putative signal transduction histidine kinase [Dinoroseobacter
shibae DFL 12]
gi|157911444|gb|ABV92877.1| putative signal transduction histidine kinase [Dinoroseobacter
shibae DFL 12]
Length = 338
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 62/107 (57%), Gaps = 1/107 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+ +T+P+I +PIV+ + F +++G+SR IGRN R QG T+ + ++R AI E
Sbjct: 25 AMVLTNPNIHDNPIVYVNDAFERVTGYSRTAAIGRNCRFLQGSMTDDADVAKLRRAIERE 84
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+ V++LNY+ G PF ++ V +DG+ +F+ +Q + R
Sbjct: 85 EDVTVDILNYRASGEPFLNRLIIAPV-KSDDGKCHYFIGIQKAMSDR 130
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 40/61 (65%)
Query: 249 RIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIA 308
R + + VL +P++ D P+VY +DAF ++TGY R +G+NCRFL G TD + ++ A
Sbjct: 21 RARVAMVLTNPNIHDNPIVYVNDAFERVTGYSRTAAIGRNCRFLQGSMTDDADVAKLRRA 80
Query: 309 I 309
I
Sbjct: 81 I 81
>gi|119490653|ref|ZP_01623058.1| regulatory components of sensory transduction system [Lyngbya sp.
PCC 8106]
gi|119453818|gb|EAW34975.1| regulatory components of sensory transduction system [Lyngbya sp.
PCC 8106]
Length = 477
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 74/138 (53%), Gaps = 6/138 (4%)
Query: 8 IEQSFNNRYTLWV-----HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEII 62
++Q N R L + ++A+ + ITD + S +PI++ ++ F K++G+S +E+
Sbjct: 144 LQQEINTRKELEIQLNLFNQAIFTCRNGVIITDATQSDNPIIYVNQAFEKITGYSVSEVW 203
Query: 63 GRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGR 122
G+N R QG ++ + IR A++ + V + NY+KDGT FW +S V G
Sbjct: 204 GKNCRFLQGEDRDQPNLDIIRNALKNDEDCLVIIRNYRKDGTLFWNEVSISPVRDA-GGN 262
Query: 123 ATHFVAVQVPIVSRKHMR 140
TH++ +Q I R M+
Sbjct: 263 ITHYIGIQSDITERHRMQ 280
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+ ++ D D P++Y + AF K+TGY +EV G+NCRFL G D D
Sbjct: 169 RNGVIITDATQSDNPIIYVNQAFEKITGYSVSEVWGKNCRFLQGEDRD 216
>gi|376003286|ref|ZP_09781099.1| Response regulator receiver modulated diguanylate cyclase
[Arthrospira sp. PCC 8005]
gi|375328316|emb|CCE16852.1| Response regulator receiver modulated diguanylate cyclase
[Arthrospira sp. PCC 8005]
Length = 452
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 66/118 (55%), Gaps = 1/118 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +A+ + ITDP+ +PI++ + G+ +++G++ E+IG N R Q + ++ +
Sbjct: 169 LEKAIAATQNGVVITDPNQPDNPIIYVNAGWERLTGYAANEVIGSNCRFLQVNQRDQPAL 228
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+IR AI E V L NY++DGT FW +S V E G T+F+ +Q + RK
Sbjct: 229 DDIRRAIAEAEECRVILKNYRRDGTIFWNELFISPV-RNEPGELTNFIGIQTDVTERK 285
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
++ + V+ DP+ PD P++Y + + +LTGY NEV+G NCRFL D L +
Sbjct: 172 AIAATQNGVVITDPNQPDNPIIYVNAGWERLTGYAANEVIGSNCRFLQVNQRDQPALDDI 231
Query: 306 SIAISPYPKKKSIYMEYVR 324
AI+ + + I Y R
Sbjct: 232 RRAIAEAEECRVILKNYRR 250
>gi|116195560|ref|XP_001223592.1| hypothetical protein CHGG_04378 [Chaetomium globosum CBS 148.51]
gi|88180291|gb|EAQ87759.1| hypothetical protein CHGG_04378 [Chaetomium globosum CBS 148.51]
Length = 734
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 72/139 (51%), Gaps = 14/139 (10%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88
++F +TDP +P++FAS G M G+SR +++GRN R+ QG T + +A+
Sbjct: 308 EAFCLTDPHQPDNPVIFASDGLSAMLGYSRRQLVGRNCRLLQGIATEATAAFRLSQAVGA 367
Query: 89 ERPIEVNLLNYKKDGTPFW-MLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYS 147
R L+NY+ DGTP+W +LF L+ E+G +F+ QV + N G Y
Sbjct: 368 GREATELLINYRPDGTPYWNLLFICPLM---ENGTVRYFLGAQVNVS-----ENMGSDYM 419
Query: 148 EDGGGSRLREIVFGSCRRE 166
E G + FG R+E
Sbjct: 420 EIMG-----VLNFGPPRQE 433
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 3/66 (4%)
Query: 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLY 303
Y LG ++F L DPH PD P+++ASD + GY R ++VG+NCR L G+ T+ T +
Sbjct: 303 YPGLG---EAFCLTDPHQPDNPVIFASDGLSAMLGYSRRQLVGRNCRLLQGIATEATAAF 359
Query: 304 QVSIAI 309
++S A+
Sbjct: 360 RLSQAV 365
>gi|448449903|ref|ZP_21591998.1| bacterioopsin activator/sensor histidine kinase [Halorubrum
litoreum JCM 13561]
gi|448480824|ref|ZP_21604746.1| bacterioopsin activator/sensor histidine kinase [Halorubrum arcis
JCM 13916]
gi|445812669|gb|EMA62660.1| bacterioopsin activator/sensor histidine kinase [Halorubrum
litoreum JCM 13561]
gi|445821990|gb|EMA71766.1| bacterioopsin activator/sensor histidine kinase [Halorubrum arcis
JCM 13916]
Length = 188
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 63/117 (53%), Gaps = 8/117 (6%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTN------- 75
ALD+LP T+T P+ PIV+ +R F +G++ ++ GRN R+FQ P +
Sbjct: 59 ALDDLPLGLTLTGPAFRDTPIVYVNRWFRDWTGYAMEDLRGRNPRLFQAPDPDAEVRADF 118
Query: 76 RRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVP 132
R + REA+ + V + N + DGTPF L + +FG + G TH++A Q P
Sbjct: 119 RDARADFREALSTWSRVTVEIRNRRSDGTPFTALVSLRPLFG-DAGTVTHWIAAQEP 174
>gi|119483270|ref|ZP_01618684.1| hypothetical protein L8106_04436 [Lyngbya sp. PCC 8106]
gi|119458037|gb|EAW39159.1| hypothetical protein L8106_04436 [Lyngbya sp. PCC 8106]
Length = 1006
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 66/126 (52%), Gaps = 1/126 (0%)
Query: 13 NNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGP 72
N R+ + + + IT+ + + I++ + GF ++G+SR E+IG+N R QG
Sbjct: 168 NQRWLQLLERGIAASSNGIVITEATQGDNTIIYVNPGFESITGYSREEVIGKNCRFLQGS 227
Query: 73 RTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVP 132
++ + E+R+AI+ V L NY+K+G FW +S V G+ TH++ +Q
Sbjct: 228 DRHQPALKELRKAIKAGESCSVTLRNYRKEGRLFWNELTISPVRNTW-GKLTHYIGIQTD 286
Query: 133 IVSRKH 138
I RK
Sbjct: 287 ISERKQ 292
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
V+ + D ++Y + F +TGY R EV+G+NCRFL G D L ++ AI
Sbjct: 186 IVITEATQGDNTIIYVNPGFESITGYSREEVIGKNCRFLQGSDRHQPALKELRKAI 241
>gi|423067020|ref|ZP_17055810.1| putative Regulatory components of sensory transduction system
[Arthrospira platensis C1]
gi|406711306|gb|EKD06507.1| putative Regulatory components of sensory transduction system
[Arthrospira platensis C1]
Length = 452
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 66/118 (55%), Gaps = 1/118 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +A+ + ITDP+ +PI++ + G+ +++G++ E+IG N R Q + ++ +
Sbjct: 169 LEKAIAATQNGVVITDPNQPDNPIIYVNAGWERLTGYAANEVIGSNCRFLQVNQRDQPAL 228
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+IR AI E V L NY++DGT FW +S V E G T+F+ +Q + RK
Sbjct: 229 DDIRRAIAEAEECRVILKNYRRDGTIFWNELFISPV-RNEPGELTNFIGIQTDVTERK 285
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
++ + V+ DP+ PD P++Y + + +LTGY NEV+G NCRFL D L +
Sbjct: 172 AIAATQNGVVITDPNQPDNPIIYVNAGWERLTGYAANEVIGSNCRFLQVNQRDQPALDDI 231
Query: 306 SIAISPYPKKKSIYMEYVR 324
AI+ + + I Y R
Sbjct: 232 RRAIAEAEECRVILKNYRR 250
>gi|347755522|ref|YP_004863086.1| PAS domain S-box protein [Candidatus Chloracidobacterium
thermophilum B]
gi|347588040|gb|AEP12570.1| PAS domain S-box [Candidatus Chloracidobacterium thermophilum B]
Length = 474
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 69/121 (57%), Gaps = 6/121 (4%)
Query: 24 LDELPDSFTIT-----DPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRT 78
L ++ D+ +T D + G I++ + F +M+G++RAE+IG+ R+ QGPRT R
Sbjct: 133 LAQMQDAVLVTEAWPIDAAEGGPRILYVNEAFERMTGYTRAEVIGQTPRILQGPRTRREE 192
Query: 79 IMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
+ +R A+ + +P+ V L+NY+KDG F + +S V G+ +VA+Q + K
Sbjct: 193 LDRLRAALEQWQPVRVELVNYRKDGREFLVDISISPV-RDPTGKVVCWVAIQRDVTQEKA 251
Query: 139 M 139
M
Sbjct: 252 M 252
>gi|417777985|ref|ZP_12425797.1| PAS domain S-box protein [Leptospira weilii str. 2006001853]
gi|410781955|gb|EKR66522.1| PAS domain S-box protein [Leptospira weilii str. 2006001853]
Length = 744
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 70/115 (60%), Gaps = 3/115 (2%)
Query: 24 LDELPDSFTITDPSIS--GHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
++++ DS +TD + G I+F + F KM+G+S+AE+IG+ R+ QGP TNR+T+ +
Sbjct: 24 VNQISDSILVTDAQLEPPGPKIIFVNPAFCKMTGYSKAELIGQTPRILQGPLTNRKTMRD 83
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
++ ++ + + +NYKKDG P+ + + +S + G+ F+++Q I +
Sbjct: 84 LKRSLTQGKDFSGETINYKKDGGPYNVEWHISAI-RDSSGKILCFISIQRDITEK 137
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 240 SSSLY-ISLGRIKQSFVLIDPHL--PDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG 294
S LY I + +I S ++ D L P +++ + AF K+TGY + E++GQ R L G
Sbjct: 16 SHELYEILVNQISDSILVTDAQLEPPGPKIIFVNPAFCKMTGYSKAELIGQTPRILQG 73
>gi|407701214|ref|YP_006826001.1| response regulator containing a CheY-like receiver domain and a
GGDEF domain [Alteromonas macleodii str. 'Black Sea 11']
gi|407250361|gb|AFT79546.1| response regulator containing a CheY-like receiver domain and a
GGDEF domain [Alteromonas macleodii str. 'Black Sea 11']
Length = 491
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 43 IVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKD 102
I++A+ + + +S E++G R+FQG T++ + + IR+A+ E+RP LLNY K
Sbjct: 163 IIYANEALCRHTEYSLEELLGETPRIFQGALTDKASTLRIRQALIEQRPCTETLLNYTKS 222
Query: 103 GTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
GTPFW+ + E G THF AVQ
Sbjct: 223 GTPFWVQMNI-FPLTNEFGEVTHFAAVQ 249
>gi|392396796|ref|YP_006433397.1| PAS domain-containing protein [Flexibacter litoralis DSM 6794]
gi|390527874|gb|AFM03604.1| PAS domain S-box [Flexibacter litoralis DSM 6794]
Length = 1249
Score = 75.1 bits (183), Expect = 4e-11, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 71/128 (55%), Gaps = 10/128 (7%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN-GRMFQGPRTNRRTIMEIREAIR 87
+S ITD G+ I++ + GFLK++ +S E+IG+ G + QG T + ++ IRE ++
Sbjct: 763 NSVVITDAK--GY-IIWVNEGFLKLTEYSITEVIGKKPGALLQGKGTKHKHVLAIREGLK 819
Query: 88 EERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH------MRN 141
++P +LNYKK G +W+ ++ VF ++ G FV ++ I +RK +N
Sbjct: 820 SKKPFTQEILNYKKYGESYWIELNVTPVFDEKTGEVIQFVGIENDITTRKEGEQLILEKN 879
Query: 142 SGMSYSED 149
+ SE+
Sbjct: 880 KALQTSEE 887
Score = 72.0 bits (175), Expect = 4e-10, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 62/113 (54%), Gaps = 4/113 (3%)
Query: 26 ELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN-GRMFQGPRTNRRTIMEIRE 84
E ++ ITD G+ + + + GF +M+G++ EIIG+ G++ QG TN ++ IRE
Sbjct: 636 ETSNAIVITDAE--GYSM-WVNEGFTRMTGYTLPEIIGKKPGKLLQGKETNFDHVLAIRE 692
Query: 85 AIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
++ ++P +LNY K G +W+ ++ V G T F+ ++ I RK
Sbjct: 693 GLKSKKPFTQEILNYDKMGKKYWLELSVTPVLDNYTGEITQFIGIETDITKRK 745
>gi|359726717|ref|ZP_09265413.1| histidine kinase sensor protein [Leptospira weilii str. 2006001855]
Length = 744
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 70/115 (60%), Gaps = 3/115 (2%)
Query: 24 LDELPDSFTITDPSIS--GHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
++++ DS +TD + G I+F + F KM+G+S+AE+IG+ R+ QGP TNR+T+ +
Sbjct: 24 VNQISDSILVTDAQLEPPGPKIIFVNPAFCKMTGYSKAELIGQTPRILQGPLTNRKTMRD 83
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
++ ++ + + +NYKKDG P+ + + +S + G+ F+++Q I +
Sbjct: 84 LKRSLTQGKDFSGETINYKKDGGPYNVEWHISAI-RDSSGKILCFISIQRDITEK 137
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 240 SSSLY-ISLGRIKQSFVLIDPHL--PDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG 294
S LY I + +I S ++ D L P +++ + AF K+TGY + E++GQ R L G
Sbjct: 16 SHELYEILVNQISDSILVTDAQLEPPGPKIIFVNPAFCKMTGYSKAELIGQTPRILQG 73
>gi|339502812|ref|YP_004690232.1| ATP-binding sensor protein [Roseobacter litoralis Och 149]
gi|338756805|gb|AEI93269.1| putative ATP-binding sensor protein [Roseobacter litoralis Och 149]
Length = 350
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 67/112 (59%), Gaps = 7/112 (6%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+ +T+P++ +PIV+A+ F++ +G++ + I+GRN R QG T++ + +R AI +
Sbjct: 33 AMVLTNPNLDDNPIVYANEAFVRTTGYAHSAIVGRNCRFLQGEDTDKAAVDVLRHAIELD 92
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
+ + V++LNYK +G PF +S + + G+ +F+ +Q K +RN
Sbjct: 93 QNVTVDILNYKANGAPFMNRLVVSPIVDSQ-GKTEYFIGIQ------KELRN 137
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 39/54 (72%)
Query: 249 RIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
R + + VL +P+L D P+VYA++AF++ TGY + +VG+NCRFL G DTD +
Sbjct: 29 RSQVAMVLTNPNLDDNPIVYANEAFVRTTGYAHSAIVGRNCRFLQGEDTDKAAV 82
>gi|341615104|ref|ZP_08701973.1| sensor histidine kinase [Citromicrobium sp. JLT1363]
Length = 222
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 1/121 (0%)
Query: 13 NNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGP 72
N + WV + ++ P + ++DP + +PIV ++ F++++ + EI+GRN R G
Sbjct: 22 NPKPAQWVRQLVETSPIASVVSDPRLQDNPIVAVNQAFIELTEYGPDEILGRNCRFLAGE 81
Query: 73 RTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVP 132
T +IR +RE++P+ V +LNYKK G PF ++ ++ E +F+ QV
Sbjct: 82 GTEPWLTEKIRSGVREKKPVLVEILNYKKSGAPFRNAVLVAPIYD-EANELLYFLGSQVE 140
Query: 133 I 133
I
Sbjct: 141 I 141
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYPK 314
V+ DP L D P+V + AF++LT Y +E++G+NCRFL G T+ + ++ + +
Sbjct: 41 VVSDPRLQDNPIVAVNQAFIELTEYGPDEILGRNCRFLAGEGTEPWLTEKIRSGVR---E 97
Query: 315 KKSIYME 321
KK + +E
Sbjct: 98 KKPVLVE 104
>gi|385803185|ref|YP_005839585.1| PAS/PAC domain-containing protein [Haloquadratum walsbyi C23]
gi|339728677|emb|CCC39838.1| sensor box protein [Haloquadratum walsbyi C23]
Length = 215
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Query: 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRT 78
W + LD + T+T P+ +PI +A++ F + +G++ +++ G N R+ QGP T
Sbjct: 66 WRLQVLDNIQFGLTLTGPAYEDNPIRYANQTFRETTGYTLSQLRGSNPRILQGPMTEASA 125
Query: 79 IMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135
I +REA + P+ V L NY+ +G PF ++ ++DG TH++ VQ I S
Sbjct: 126 INALREATQIWEPVTVTLWNYRYNGVPFRTRLSIT-PLRRDDGMITHWLGVQSVIDS 181
>gi|323136775|ref|ZP_08071856.1| PAS sensor protein [Methylocystis sp. ATCC 49242]
gi|322398092|gb|EFY00613.1| PAS sensor protein [Methylocystis sp. ATCC 49242]
Length = 149
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 1/127 (0%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+ LD + T++DP + PIV+A++ F M G+++ EIIG N R QG ++ +
Sbjct: 17 QILDSCVNGVTLSDPDLEDSPIVYANKAFEDMCGYTQEEIIGINCRFLQGSDRDQPELER 76
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
+R AI++ +EV L NY+K+G F + +F E G +F+ VQ I + +
Sbjct: 77 LRAAIKKGEAVEVTLRNYRKNGELFHNRLVVKPLF-DERGNVVYFLGVQYDITEQVEAQQ 135
Query: 142 SGMSYSE 148
+ SE
Sbjct: 136 EIKTLSE 142
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 38/74 (51%)
Query: 237 GFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296
G I L L L DP L D P+VYA+ AF + GY + E++G NCRFL G D
Sbjct: 9 GVIPHVLTQILDSCVNGVTLSDPDLEDSPIVYANKAFEDMCGYTQEEIIGINCRFLQGSD 68
Query: 297 TDTTVLYQVSIAIS 310
D L ++ AI
Sbjct: 69 RDQPELERLRAAIK 82
>gi|110667741|ref|YP_657552.1| bacterioopsin activator/sensor histidine kinase [Haloquadratum
walsbyi DSM 16790]
gi|109625488|emb|CAJ51915.1| sensor box protein [Haloquadratum walsbyi DSM 16790]
Length = 215
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Query: 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRT 78
W + LD + T+T P+ +PI +A++ F + +G++ +++ G N R+ QGP T
Sbjct: 66 WRLQVLDNIQFGLTLTGPAYEDNPIRYANQTFRETTGYTLSQLRGSNPRILQGPMTEASA 125
Query: 79 IMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135
I +REA + P+ V L NY+ +G PF ++ ++DG TH++ VQ I S
Sbjct: 126 INALREATQIWEPVTVTLWNYRYNGVPFRTRLSIT-PLRRDDGMITHWLGVQSVIDS 181
>gi|397665839|ref|YP_006507376.1| sensory box protein [Legionella pneumophila subsp. pneumophila]
gi|395129250|emb|CCD07478.1| sensory box protein [Legionella pneumophila subsp. pneumophila]
Length = 292
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 72/123 (58%), Gaps = 7/123 (5%)
Query: 22 EALDELPDSFTITDP----SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRR 77
+ +DE D IT + +G +V+ ++ F +S + EIIG+ R+ QG T++
Sbjct: 11 QLIDETSDMVIITKAEPLEAPNGPEVVWVNKAFENISKYKANEIIGQTPRILQGKETDQN 70
Query: 78 TIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKE-DGRATHFVAVQVPIVSR 136
T+ I+EAI+ + I V+LLNY KDGTP+W+ K S+V+ ++ G + A++ I +
Sbjct: 71 TLKMIKEAIKAQTNINVDLLNYTKDGTPYWI--KFSIVYLRDGQGNLCYLGAIEKDISAI 128
Query: 137 KHM 139
K++
Sbjct: 129 KNL 131
>gi|186686857|ref|YP_001870050.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(s) [Nostoc punctiforme PCC 73102]
gi|186469209|gb|ACC85009.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(s) [Nostoc punctiforme PCC 73102]
Length = 1043
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PI++ + F ++G+ +E+IGRN R QG + + E+R AI+E+R
Sbjct: 243 LTDPNQPDNPIIYVNPAFELITGYCASEVIGRNCRFLQGNDLEQVALQELRSAIQEQREC 302
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
V L NY+KD FW ++ VF G T+F+ +Q I
Sbjct: 303 HVILRNYRKDNFLFWNELYLAPVFDN-SGYLTNFIGIQTDI 342
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 37/56 (66%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
+L DP+ PD P++Y + AF +TGY +EV+G+NCRFL G D + L ++ AI
Sbjct: 242 ILTDPNQPDNPIIYVNPAFELITGYCASEVIGRNCRFLQGNDLEQVALQELRSAIQ 297
>gi|359686834|ref|ZP_09256835.1| PAS domain S-box protein [Leptospira licerasiae serovar Varillal
str. MMD0835]
gi|418750444|ref|ZP_13306730.1| blue-light-activated family protein [Leptospira licerasiae str.
MMD4847]
gi|418756943|ref|ZP_13313131.1| putative blue-light-activated protein [Leptospira licerasiae
serovar Varillal str. VAR 010]
gi|384116614|gb|EIE02871.1| putative blue-light-activated protein [Leptospira licerasiae
serovar Varillal str. VAR 010]
gi|404273047|gb|EJZ40367.1| blue-light-activated family protein [Leptospira licerasiae str.
MMD4847]
Length = 619
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 76/142 (53%), Gaps = 5/142 (3%)
Query: 1 MDSQLGLIEQSFNNRYTL-WVHEALDELPDSFTITDPSISGHP---IVFASRGFLKMSGF 56
+D L LI Q+ L + +++ D F IT+ S P IV+ + F +++G+
Sbjct: 109 LDRSLRLILQARITEENLNLLKIGIEKSKDIFLITEASPIDEPGPKIVYVNGAFERLTGY 168
Query: 57 SRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVF 116
R E++G+ R+ QGP+T+R + IR+AI E +P ++NY KDG +W+ + +
Sbjct: 169 KREEVLGKTPRILQGPKTDRVVLDRIRKAISEAKPCFEEIINYDKDGKEYWIEMDIFPIV 228
Query: 117 GKEDGRATHFVAVQVPIVSRKH 138
E G TH + ++ I R++
Sbjct: 229 N-EQGIVTHLMGIERDITERRN 249
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 224 RLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMP---MVYASDAFLKLTGYD 280
RL+ R + + L I + + K F++ + D P +VY + AF +LTGY
Sbjct: 114 RLILQARITEENLNL----LKIGIEKSKDIFLITEASPIDEPGPKIVYVNGAFERLTGYK 169
Query: 281 RNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
R EV+G+ R L G TD VL ++ AIS
Sbjct: 170 REEVLGKTPRILQGPKTDRVVLDRIRKAIS 199
>gi|428215254|ref|YP_007088398.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
protein [Oscillatoria acuminata PCC 6304]
gi|428003635|gb|AFY84478.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
protein [Oscillatoria acuminata PCC 6304]
Length = 1288
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 56/97 (57%), Gaps = 1/97 (1%)
Query: 41 HPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYK 100
+ +V+ + F KM+G+S AE G+N R QG ++ + E+R AIR + +V L NY+
Sbjct: 745 NAVVYVNPSFEKMTGYSSAEATGQNCRFLQGRDRHQPALQELRNAIRNGQDCKVTLRNYR 804
Query: 101 KDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
KDGT FW +S V E G TH++ VQ I RK
Sbjct: 805 KDGTLFWNELSLSPV-ENERGAITHYIGVQTDISDRK 840
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
++I + D +VY + +F K+TGY E GQNCRFL G D L ++ AI
Sbjct: 736 IVISEYSQDNAVVYVNPSFEKMTGYSSAEATGQNCRFLQGRDRHQPALQELRNAI 790
>gi|255073407|ref|XP_002500378.1| predicted protein [Micromonas sp. RCC299]
gi|226515641|gb|ACO61636.1| predicted protein, partial [Micromonas sp. RCC299]
Length = 101
Score = 74.7 bits (182), Expect = 5e-11, Method: Composition-based stats.
Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+ + D + PIVFA+ F +G+ E++GRN R QGP T+R T+ +REAI +
Sbjct: 2 ALCVADATAKDQPIVFANDNFFVQTGYPPEEVLGRNCRFLQGPGTDRETVRAMREAIAKG 61
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
+ L+NY K+GT MS E G THF+ +Q
Sbjct: 62 KEFHGRLMNYHKNGTSLVNSLVMS-PLRDEKGVVTHFIGIQ 101
Score = 48.9 bits (115), Expect = 0.004, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 33/59 (55%)
Query: 252 QSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
+ + D D P+V+A+D F TGY EV+G+NCRFL G TD + + AI+
Sbjct: 1 HALCVADATAKDQPIVFANDNFFVQTGYPPEEVLGRNCRFLQGPGTDRETVRAMREAIA 59
>gi|421618984|ref|ZP_16059950.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Pseudomonas stutzeri KOS6]
gi|409779076|gb|EKN58752.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Pseudomonas stutzeri KOS6]
Length = 1064
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 68/136 (50%), Gaps = 13/136 (9%)
Query: 2 DSQLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEI 61
+ QL L+++S Y + I D S PI++A+ F +++G+ E+
Sbjct: 365 ERQLRLLQRSLEASY------------NGVVIVDAQASDMPIIYANPAFERITGYPPTEV 412
Query: 62 IGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDG 121
+G+N R QGP + EIR + + R + V + N+++DG FW +S +F E G
Sbjct: 413 VGKNCRFLQGPDRDPLRSEEIRRGLSQARDVHVVVRNFRRDGQAFWNDLYISPIF-DERG 471
Query: 122 RATHFVAVQVPIVSRK 137
+HFV VQ I RK
Sbjct: 472 VVSHFVGVQNDISERK 487
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 4/78 (5%)
Query: 221 LTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYD 280
LT R + ++ + + + SL S + V++D DMP++YA+ AF ++TGY
Sbjct: 353 LTLRDITDRKTAERQLRLLQRSLEASYNGV----VIVDAQASDMPIIYANPAFERITGYP 408
Query: 281 RNEVVGQNCRFLNGVDTD 298
EVVG+NCRFL G D D
Sbjct: 409 PTEVVGKNCRFLQGPDRD 426
>gi|383757613|ref|YP_005436598.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
[Rubrivivax gelatinosus IL144]
gi|381378282|dbj|BAL95099.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Rubrivivax gelatinosus IL144]
Length = 737
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 4/119 (3%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
ALD + ITD + + + F++++G++ E++G + + QG T+ T+ +
Sbjct: 66 ALDAISQGVLITD---ANRRTTYVNAAFVELTGYTAEEMLGNSCALLQGAATSAETVQAM 122
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
REA+ P LLNY+KDGTPFW K+ V +DG T FV VQ + +R+ N
Sbjct: 123 REALDRGEPFHGELLNYRKDGTPFWNELKIVPVR-DDDGVITQFVGVQRDVTARRDAMN 180
>gi|303275956|ref|XP_003057272.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461624|gb|EEH58917.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 110
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 60/107 (56%), Gaps = 1/107 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
+D L + TI D S+ P+++A+ GF ++G+S E IG N R QGP T + IR
Sbjct: 1 MDSLQEGVTIADFSLPDQPLIYANHGFELITGYSIEETIGHNCRFLQGPDTEPEKLKIIR 60
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
++I +P V L NY+K+G F ++ + E G+ TH+V +Q
Sbjct: 61 KSINAGQPCVVELQNYRKNGERFVNSLSLTPIRTAE-GKVTHYVGIQ 106
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+++ + D LPD P++YA+ F +TGY E +G NCRFL G DT+
Sbjct: 4 LQEGVTIADFSLPDQPLIYANHGFELITGYSIEETIGHNCRFLQGPDTE 52
>gi|430762223|ref|YP_007218080.1| sensory box protein [Thioalkalivibrio nitratireducens DSM 14787]
gi|430011847|gb|AGA34599.1| sensory box protein [Thioalkalivibrio nitratireducens DSM 14787]
Length = 150
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+D D I + + +++ +R F +++G+ R EI+ R+ R QG T++ + EI
Sbjct: 13 AVDVSNDGIVIAEQEGHDNILIYVNRAFEELTGYGRDEILYRDCRFLQGTDTDQEGVREI 72
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
R A+ RP V L NY+KDG+ FW ++ V+ +D + T+++ +Q I R
Sbjct: 73 RAALDAGRPCRVVLRNYRKDGSMFWNELSITPVYNDDD-QLTYYIGIQKDITGR 125
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 35/58 (60%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISP 311
V+ + D ++Y + AF +LTGY R+E++ ++CRFL G DTD + ++ A+
Sbjct: 21 IVIAEQEGHDNILIYVNRAFEELTGYGRDEILYRDCRFLQGTDTDQEGVREIRAALDA 78
>gi|427409812|ref|ZP_18900014.1| PAS domain S-box protein [Sphingobium yanoikuyae ATCC 51230]
gi|425711945|gb|EKU74960.1| PAS domain S-box protein [Sphingobium yanoikuyae ATCC 51230]
Length = 196
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 86/177 (48%), Gaps = 7/177 (3%)
Query: 32 TITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP 91
++DP + +PIV + F++++G+S+ E+IGRN R +G T +R+A+ + RP
Sbjct: 19 VVSDPRRADNPIVACNPAFVELTGYSQEEVIGRNCRFLRGAGTEAEQTEMLRDAVAQVRP 78
Query: 92 IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSEDGG 151
+ V L+NY+K+GTPF ++ +F E G F+ Q+ I R R+ +
Sbjct: 79 VMVELINYRKNGTPFRNAVMVAPLFDDE-GELEFFLGSQMAIDDRPVSRHQQARMRIENL 137
Query: 152 GSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIEDSCEASDLEKRKAATAI 208
R R+I+ E + L+ L + +++ + LE R A AI
Sbjct: 138 SGRQRQII------EALAQGRLNKQIAFELGVTERTVKMHRAAVLRTLEVRSVAEAI 188
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 31/45 (68%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
V+ DP D P+V + AF++LTGY + EV+G+NCRFL G T+
Sbjct: 19 VVSDPRRADNPIVACNPAFVELTGYSQEEVIGRNCRFLRGAGTEA 63
>gi|386712617|ref|YP_006178939.1| blue-light photoreceptor [Halobacillus halophilus DSM 2266]
gi|384072172|emb|CCG43662.1| blue-light photoreceptor [Halobacillus halophilus DSM 2266]
Length = 266
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 68/122 (55%), Gaps = 1/122 (0%)
Query: 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRT 78
++ A+D + I+DP +P+++ ++GF ++G+ EI+G+N R QG T+ +
Sbjct: 17 FIKAAIDRVGAGVVISDPEQEDNPMIYCNKGFEDLTGYKAEEILGKNCRFLQGEDTSSQM 76
Query: 79 IMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
+ +IR+ + + V L NYKKDGT FW ++ V+ ++ + FV VQ + R+
Sbjct: 77 VDKIRKGLSNYENVLVELKNYKKDGTMFWNELQIFPVYIQQMDQ-NFFVGVQRDVSQRRE 135
Query: 139 MR 140
+
Sbjct: 136 QQ 137
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
++ R+ V+ DP D PM+Y + F LTGY E++G+NCRFL G DT + ++ ++
Sbjct: 21 AIDRVGAGVVISDPEQEDNPMIYCNKGFEDLTGYKAEEILGKNCRFLQGEDTSSQMVDKI 80
Query: 306 SIAISPY 312
+S Y
Sbjct: 81 RKGLSNY 87
>gi|428210350|ref|YP_007094703.1| multi-sensor hybrid histidine kinase [Chroococcidiopsis thermalis
PCC 7203]
gi|428012271|gb|AFY90834.1| multi-sensor hybrid histidine kinase [Chroococcidiopsis thermalis
PCC 7203]
Length = 937
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 64/119 (53%), Gaps = 1/119 (0%)
Query: 18 LWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRR 77
L + +A+ + + ITDP G PIV+A+ F M+G+ E++G++ R+ G T+ +
Sbjct: 188 LMLAQAMAAVSEGVFITDPHQQGCPIVYANSVFCGMTGYHLTEVLGKDWRLLCGTATDPQ 247
Query: 78 TIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
I +I AI + ++ LLNY+ D FW K++ VF G +FV++ I R
Sbjct: 248 AIAKIERAIAQNTEVQTTLLNYRADAQTFWSEIKITPVFSN-TGTLLYFVSILTDISDR 305
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
++ + + + DPH P+VYA+ F +TGY EV+G++ R L G TD + ++
Sbjct: 193 AMAAVSEGVFITDPHQQGCPIVYANSVFCGMTGYHLTEVLGKDWRLLCGTATDPQAIAKI 252
Query: 306 SIAISPYPKKKSIYMEY 322
AI+ + ++ + Y
Sbjct: 253 ERAIAQNTEVQTTLLNY 269
>gi|383642354|ref|ZP_09954760.1| PAS/PAC sensor hybrid histidine kinase [Sphingomonas elodea ATCC
31461]
Length = 568
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP +PIVFA++ FL ++G+ +EI+GRN R QG T+R + E+R A+ E +
Sbjct: 66 LTDPRQDDNPIVFANKAFLDLTGYEESEILGRNCRFLQGAETDRDAVAEMRAAVEAEEAL 125
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
+ ++NY++DG+PFW ++ V DG +F A Q+ + R+
Sbjct: 126 AIEVINYRRDGSPFWNAVFIAPVL-DPDGELIYFFASQLDVTRRRQ 170
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 51/83 (61%), Gaps = 7/83 (8%)
Query: 216 THYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLK 275
TH+ Q R + G PG+G S+ + +L + +L DP D P+V+A+ AFL
Sbjct: 33 THHWQ---RAIIGT----PGLGDRSTVFFAALQMTRMPMILTDPRQDDNPIVFANKAFLD 85
Query: 276 LTGYDRNEVVGQNCRFLNGVDTD 298
LTGY+ +E++G+NCRFL G +TD
Sbjct: 86 LTGYEESEILGRNCRFLQGAETD 108
>gi|241518298|ref|YP_002978926.1| hypothetical protein Rleg_5559 [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240862711|gb|ACS60375.1| signal transduction histidine kinase [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 342
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
+TD S PIV A++ FL+++G+ E++G N R QGP T+ EIR AI ER
Sbjct: 40 MVVTDARKSDQPIVLANKAFLELTGYEAEEVLGHNCRFLQGPATSPIAAAEIRAAIAGER 99
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
I + +LNYKK G FW +S V G +DGR +F Q+
Sbjct: 100 EISIEILNYKKSGEQFWNRLHLSPVHG-DDGRILYFFGSQI 139
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%)
Query: 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDT 297
I+ R + V+ D D P+V A+ AFL+LTGY+ EV+G NCRFL G T
Sbjct: 31 IAFERTRMPMVVTDARKSDQPIVLANKAFLELTGYEAEEVLGHNCRFLQGPAT 83
>gi|384248305|gb|EIE21789.1| hypothetical protein COCSUDRAFT_17195 [Coccomyxa subellipsoidea
C-169]
Length = 143
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 61/111 (54%), Gaps = 1/111 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
+D + TI D S P+++A+ F +++G+S AE +G+N R QGP T+ + E+R
Sbjct: 1 MDNTKEGITIADCSQPDMPLIYANEAFARITGYSVAESLGKNCRFLQGPGTDEAPLEELR 60
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
A R+ + V L+NY+K+G F ++ + G TH+V +Q I
Sbjct: 61 RATRQGQACVVQLMNYRKNGDAFVNYLSVTPIHDSA-GVLTHYVGIQSDIT 110
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305
K+ + D PDMP++YA++AF ++TGY E +G+NCRFL G TD L ++
Sbjct: 5 KEGITIADCSQPDMPLIYANEAFARITGYSVAESLGKNCRFLQGPGTDEAPLEEL 59
>gi|163851321|ref|YP_001639364.1| PAS sensor protein [Methylobacterium extorquens PA1]
gi|163662926|gb|ABY30293.1| PAS sensor protein [Methylobacterium extorquens PA1]
Length = 387
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 61/100 (61%), Gaps = 8/100 (8%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TD ++ G+PI+FA++ F ++SG+S +++G++ GP T+ T+ E AIRE R
Sbjct: 44 VTDATLPGNPIIFANQAFAELSGYSLEDLLGQDPHFMNGPETDPATVQEYEAAIRESRNA 103
Query: 93 EVNLLNYKKDGTPF-WMLFKMSLVFGKEDGRAT---HFVA 128
+ +L Y KDG PF MLF L +DG+ T HF++
Sbjct: 104 TLEILQYCKDGKPFRAMLFASPL----DDGQGTVTNHFLS 139
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ ++ D LP P+++A+ AF +L+GY +++GQ+ F+NG +TD + + AI
Sbjct: 39 RMPMIVTDATLPGNPIIFANQAFAELSGYSLEDLLGQDPHFMNGPETDPATVQEYEAAI 97
>gi|395494064|ref|ZP_10425643.1| sensory box/GGDEF domain/EAL domain-containing protein
[Sphingomonas sp. PAMC 26617]
Length = 782
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 63/113 (55%), Gaps = 4/113 (3%)
Query: 29 DSFTITDPS---ISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
DS IT+ + G I++ + F + +G+S +++G+ R+ QGP T +R+A
Sbjct: 193 DSILITEAEPVDMPGPRILYCNEAFTRTTGYSLEDVLGKTPRILQGPETQESARKLLRDA 252
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
+ +P+ V L NY+KDG PF + ++ V + G TH+++VQ I RKH
Sbjct: 253 FAQWKPVTVELTNYRKDGAPFCVELSIAPV-ANDKGWFTHWISVQRDITERKH 304
>gi|372488196|ref|YP_005027761.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
protein [Dechlorosoma suillum PS]
gi|359354749|gb|AEV25920.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
protein [Dechlorosoma suillum PS]
Length = 737
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 7/150 (4%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++ + IT + HPI + + F +++G+S AE+ GRNGR ++ + EI
Sbjct: 173 AVESSSNGIMITSATQLDHPITYVNPAFERITGYSAAEVQGRNGRFLVRDDLQQKGLNEI 232
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R A+R+ R L NY+KDG+ FW ++ V + THFV+V + R H
Sbjct: 233 RAALRDRREGHAILRNYRKDGSLFWNELHLAPVLDESGQSTTHFVSVINDVSDRIH---- 288
Query: 143 GMSYSEDGGGSRLREIVFGSCRREVCSDSL 172
Y E +++ G R + +D +
Sbjct: 289 ---YQEQLEYQATHDVLTGLANRSLLADRI 315
>gi|427714672|ref|YP_007063296.1| PAS domain-containing protein [Synechococcus sp. PCC 6312]
gi|427378801|gb|AFY62753.1| PAS domain S-box [Synechococcus sp. PCC 6312]
Length = 1154
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 66/115 (57%), Gaps = 1/115 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++ + ITD +P+++A+ F K++G+ +E+IGRN R QG N+ + +
Sbjct: 322 AIEASTNGIVITDHRRPDYPVIYANPAFEKITGYRVSEVIGRNCRFLQGDDQNQPGLQAL 381
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
R AI++ + V L N +K+GT FW +S ++ + G+ TH++ +Q + RK
Sbjct: 382 RHAIKKGQSGRVVLKNIRKNGTVFWNELSISPIY-DDQGQLTHYIGIQTDVSERK 435
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 36/56 (64%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
V+ D PD P++YA+ AF K+TGY +EV+G+NCRFL G D + L + AI
Sbjct: 330 IVITDHRRPDYPVIYANPAFEKITGYRVSEVIGRNCRFLQGDDQNQPGLQALRHAI 385
>gi|251772607|gb|EES53172.1| putative diguanylate cyclase/phosphodiesterase [Leptospirillum
ferrodiazotrophum]
Length = 1369
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 62/108 (57%), Gaps = 4/108 (3%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL L + I+DP + +++ + F +++G+S ++G+N R+ QGP T+ T+ EI
Sbjct: 775 ALLSLDEGVAISDPRGT---VLYVNAAFERLTGYSARSMVGQNCRLLQGPETDPETVREI 831
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
R+A+ + L NY+KDGTPFW L + + G TH+V VQ
Sbjct: 832 RQALARGQSFRKALRNYRKDGTPFWNLLSL-VPLKNSAGVITHYVGVQ 878
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 262 PDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
P ++Y + AF +LTGY +VGQNCR L G +TD + ++ A++
Sbjct: 788 PRGTVLYVNAAFERLTGYSARSMVGQNCRLLQGPETDPETVREIRQALA 836
>gi|399030721|ref|ZP_10731052.1| PAS domain S-box [Flavobacterium sp. CF136]
gi|398071120|gb|EJL62390.1| PAS domain S-box [Flavobacterium sp. CF136]
Length = 171
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Query: 41 HPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYK 100
I+FAS G KM+G++ E++G+ +MFQGP+T+ + EIR AI ++ P E +LNYK
Sbjct: 80 QKIIFASEGICKMTGYTEKEVLGKLPKMFQGPKTSTVVLKEIRIAIEKQTPFEKTILNYK 139
Query: 101 KDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
K+G + + VF + G +HF+A +
Sbjct: 140 KNGETYNCIIHGFPVFNVK-GVLSHFIAFE 168
Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 249 RIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIA 308
R+K VLI + +++AS+ K+TGY EV+G+ + G T T VL ++ IA
Sbjct: 67 RLKDEVVLITD--VEQKIIFASEGICKMTGYTEKEVLGKLPKMFQGPKTSTVVLKEIRIA 124
Query: 309 I---SPYPK 314
I +P+ K
Sbjct: 125 IEKQTPFEK 133
>gi|393722346|ref|ZP_10342273.1| sensor histidine kinase [Sphingomonas sp. PAMC 26605]
Length = 207
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
Query: 28 PDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIR 87
P I+DP + +PIV + F +++G+ +++GRN R GP T EIR +R
Sbjct: 22 PIPSVISDPRLPDNPIVACNAAFCELTGYPVEDVVGRNCRFLSGPATEPWLTEEIRRGVR 81
Query: 88 EERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135
E RP+ V +LNYK+ G PF ++ ++ + D +F+ Q+ I S
Sbjct: 82 EHRPVLVEILNYKRSGQPFRNAVLVAPIYDENDA-LLYFLGSQIEIDS 128
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 32/44 (72%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
V+ DP LPD P+V + AF +LTGY +VVG+NCRFL+G T+
Sbjct: 26 VISDPRLPDNPIVACNAAFCELTGYPVEDVVGRNCRFLSGPATE 69
>gi|255084467|ref|XP_002508808.1| predicted protein [Micromonas sp. RCC299]
gi|226524085|gb|ACO70066.1| predicted protein [Micromonas sp. RCC299]
Length = 1097
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+D + + TI D S+ P+V+A+ GF ++G+S E +G N R QGP T + I
Sbjct: 211 AMDSVQEGVTIADFSLPDQPLVYANHGFELITGYSIEETVGHNCRFLQGPGTEPEKVEHI 270
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
R I P V L NY+K+G F ++ + GR TH+V +Q
Sbjct: 271 RRCINAGLPCTVQLKNYRKNGEEFVNYLSLTPIRTAR-GRVTHYVGIQ 317
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
++S +++ +++ + D LPD P+VYA+ F +TGY E VG NCRFL G T+
Sbjct: 204 LASLKELAMDSVQEGVTIADFSLPDQPLVYANHGFELITGYSIEETVGHNCRFLQGPGTE 263
>gi|332672276|ref|YP_004455284.1| putative PAS/PAC sensor protein [Cellulomonas fimi ATCC 484]
gi|332341314|gb|AEE47897.1| putative PAS/PAC sensor protein [Cellulomonas fimi ATCC 484]
Length = 594
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 47/75 (62%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ PIV+ + F +++G +E++GRN R QG T+ I +R A+ E RP
Sbjct: 64 VTDPTQPDDPIVWVNTAFERLTGHRASEVVGRNCRFLQGTGTDLAAIGALRTALDEGRPA 123
Query: 93 EVNLLNYKKDGTPFW 107
+LNY++DGTPFW
Sbjct: 124 TAQVLNYRRDGTPFW 138
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 256 LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYPKK 315
+ DP PD P+V+ + AF +LTG+ +EVVG+NCRFL G TD + + A+
Sbjct: 64 VTDPTQPDDPIVWVNTAFERLTGHRASEVVGRNCRFLQGTGTDLAAIGALRTALDEGRPA 123
Query: 316 KSIYMEYVR 324
+ + Y R
Sbjct: 124 TAQVLNYRR 132
>gi|372280141|ref|ZP_09516177.1| putative signal transduction histidine kinase [Oceanicola sp. S124]
Length = 346
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 60/105 (57%), Gaps = 1/105 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
S +TDP++ +PIV+ +R F +++G+ IGRN R QG T+ I +REA+ E
Sbjct: 29 SMVLTDPALPDNPIVYVNRAFEEVTGYMSGMAIGRNCRFLQGENTDPDDIKRLREALDRE 88
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
V+L+NY+ DG+ F M+ + EDG +F+ +Q P+
Sbjct: 89 EDCTVDLVNYRADGSEFINRLMMTPIR-SEDGSLRYFLGMQKPLA 132
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 32/46 (69%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
S VL DP LPD P+VY + AF ++TGY +G+NCRFL G +TD
Sbjct: 29 SMVLTDPALPDNPIVYVNRAFEEVTGYMSGMAIGRNCRFLQGENTD 74
>gi|359394678|ref|ZP_09187731.1| hypothetical protein KUC_1328 [Halomonas boliviensis LC1]
gi|357971925|gb|EHJ94370.1| hypothetical protein KUC_1328 [Halomonas boliviensis LC1]
Length = 931
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88
+ I D S P+V+ + F +++G++R +++G N R QG T+ TI ++ I E
Sbjct: 376 NGVVIVDAQRSDLPMVYVNAAFERITGYARNQVLGHNCRFLQGDETDPATIKQLHAGIVE 435
Query: 89 ERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+R + V + NY++DGT FW +S V E+ THF+ VQ I ++
Sbjct: 436 QREVHVVIRNYRRDGTVFWNDLYISPVL-DENAEVTHFIGVQNDISEQR 483
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 37/55 (67%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
V++D D+PMVY + AF ++TGY RN+V+G NCRFL G +TD + Q+ I
Sbjct: 379 VIVDAQRSDLPMVYVNAAFERITGYARNQVLGHNCRFLQGDETDPATIKQLHAGI 433
>gi|352100624|ref|ZP_08958211.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Halomonas sp. HAL1]
gi|350601044|gb|EHA17099.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Halomonas sp. HAL1]
Length = 927
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 67/117 (57%), Gaps = 2/117 (1%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
I D S P+V+ + F +++G+SR+E +GRN R QG T+ T+ +RE + E+ +
Sbjct: 383 IVDAQSSALPMVYVNAAFERITGYSRSEALGRNCRFLQGEDTDPATVKLLREGVTEQHEV 442
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSED 149
V + NY++DG+ FW +S V E G TH++ VQ VS + + ++Y+ +
Sbjct: 443 HVVIRNYRRDGSIFWNDLYISPV-RDETGDVTHYLGVQND-VSEQREYQAQLTYNAN 497
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 10/75 (13%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD----------TTVLYQ 304
+++D +PMVY + AF ++TGY R+E +G+NCRFL G DTD T ++
Sbjct: 382 IIVDAQSSALPMVYVNAAFERITGYSRSEALGRNCRFLQGEDTDPATVKLLREGVTEQHE 441
Query: 305 VSIAISPYPKKKSIY 319
V + I Y + SI+
Sbjct: 442 VHVVIRNYRRDGSIF 456
>gi|323138393|ref|ZP_08073463.1| putative PAS/PAC sensor protein [Methylocystis sp. ATCC 49242]
gi|322396340|gb|EFX98871.1| putative PAS/PAC sensor protein [Methylocystis sp. ATCC 49242]
Length = 886
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 64/120 (53%), Gaps = 1/120 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++ + I+D G+P ++ + ++G++R +++G N RM QGP T+ + +I
Sbjct: 524 AIESVQIGIVISDARAPGNPCIYVNPALSHITGYTREQLLGGNMRMLQGPGTDPAVLEQI 583
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R A+ EV ++NY+KDG FW +S V + G+ THF+ V + ++ S
Sbjct: 584 RHALAAGEICEVTMMNYRKDGGAFWNDLLISPVV-DDTGKITHFIGVLTDVTEKRRAEES 642
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 77/332 (23%), Positives = 141/332 (42%), Gaps = 51/332 (15%)
Query: 18 LWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRR 77
L + A+D+ P + I++ I + + F +++G+ EIIG+N R+ Q T++
Sbjct: 269 LTLSAAVDQSPVAVMISNKDGC---IEYVNSCFTRLTGYEANEIIGKNPRILQSGHTSKE 325
Query: 78 TIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+ +AIR + + KK+G +W ++ DG TH++A+Q I +K
Sbjct: 326 QHRRLWDAIRSGEEWRGEIQDRKKNGELYWAQETIT-SLRDADGEITHYLAIQQDITEQK 384
Query: 138 HMRNSGMSYSEDGGGSRLREIVFGS----------CRREVCSDSLLDLDRVLALDSDD-- 185
+ + ++ SE+ R R + + R SD++ D +L L D+
Sbjct: 385 RDKEA-LAESEE----RFRNVAAMAGEWLWEQDPDGRYIYSSDAVHD---ILGLTPDEIR 436
Query: 186 --TGLEI--EDSCEASDLEKR-KAATAIDNILSVLTHYSQLTGRLVCGKRCSLP---GMG 237
+ LE+ D+ S + R + A ++ HY GR + + P G G
Sbjct: 437 NRSYLELFFPDNQNLSFMRLRAQEAGNQRPFHRIVNHYRHKDGRDIFTESTGAPIFDGAG 496
Query: 238 FI----------------SSSLYI---SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG 278
+ L + ++ ++ V+ D P P +Y + A +TG
Sbjct: 497 RLIKWRGVDHDITRRKEFEDELRVRNRAIESVQIGIVISDARAPGNPCIYVNPALSHITG 556
Query: 279 YDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
Y R +++G N R L G TD VL Q+ A++
Sbjct: 557 YTREQLLGGNMRMLQGPGTDPAVLEQIRHALA 588
>gi|402772327|ref|YP_006591864.1| AraC family transcriptional regulator [Methylocystis sp. SC2]
gi|401774347|emb|CCJ07213.1| Transcriptional regulator with PAS/PAC sensors, AraC family
[Methylocystis sp. SC2]
Length = 150
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+ LD + T+ DP PIV+A++ F M+G+ + EIIGRN R QG ++ +
Sbjct: 17 QILDSCVNGVTLADPDQPDAPIVYANKAFESMTGYGQEEIIGRNCRFLQGDDRDQEGLAP 76
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
+REA+R + IEV L NY+K+G F+ ++ + G +++ VQ
Sbjct: 77 LREAMRTHQHIEVTLRNYRKNGELFFNKLNITPLLDSR-GAVIYYLGVQ 124
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 35/62 (56%)
Query: 237 GFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296
G I L L L DP PD P+VYA+ AF +TGY + E++G+NCRFL G D
Sbjct: 9 GIIPKILTQILDSCVNGVTLADPDQPDAPIVYANKAFESMTGYGQEEIIGRNCRFLQGDD 68
Query: 297 TD 298
D
Sbjct: 69 RD 70
>gi|348030025|ref|YP_004872711.1| methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
[Glaciecola nitratireducens FR1064]
gi|347947369|gb|AEP30719.1| methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
[Glaciecola nitratireducens FR1064]
Length = 592
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 62/112 (55%), Gaps = 5/112 (4%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN-GRMFQGPRTNRRTIMEIREAIR 87
+S ITD I + + GF +++GFS AE++G+ G + QG T+ RT+ IR+ I
Sbjct: 275 NSVIITDAK---GLIEYVNPGFERLTGFSEAEVLGKKPGSVLQGKETDARTVQRIRDYIA 331
Query: 88 EERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
E P +LNY DG P+W+ ++ +F K G+ +++VQ I K M
Sbjct: 332 REEPFYDEILNYSVDGKPYWISLSINPIFDKH-GKLEKYISVQANITQVKQM 382
>gi|170749428|ref|YP_001755688.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
radiotolerans JCM 2831]
gi|170655950|gb|ACB25005.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
radiotolerans JCM 2831]
Length = 812
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 61/95 (64%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A D+ + +TDP++ +PIVFA+R FL++SG++ E+IGRN R QGP T+ I +
Sbjct: 54 AADKTRMAMIVTDPNLPDNPIVFANRAFLELSGYTAEELIGRNCRFLQGPATDPADIARV 113
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFG 117
R AI R + V LLNY++DG+ F +S VFG
Sbjct: 114 RAAIAARRDVVVELLNYRRDGSTFVNELYISPVFG 148
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
Query: 231 CSLPGMGFISSSL-YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNC 289
SL G+G S L + + + + + ++ DP+LPD P+V+A+ AFL+L+GY E++G+NC
Sbjct: 38 TSLAGVGTARSDLLFTAADKTRMAMIVTDPNLPDNPIVFANRAFLELSGYTAEELIGRNC 97
Query: 290 RFLNGVDTD 298
RFL G TD
Sbjct: 98 RFLQGPATD 106
>gi|449298363|gb|EMC94378.1| hypothetical protein BAUCODRAFT_25581 [Baudoinia compniacensis UAMH
10762]
Length = 1049
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 65/119 (54%), Gaps = 3/119 (2%)
Query: 17 TLWVH--EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
TL H EA + L + F +TDPS +PIVFAS F + + + + IGRN R QGPRT
Sbjct: 560 TLAPHLREASEGLAEVFCLTDPSRPDNPIVFASEEFARTTQYGMSYAIGRNCRFLQGPRT 619
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
N ++ + EA + + +NY++DG+PF L ++ + G +F+ QV +
Sbjct: 620 NPNSVRRLAEACVAGKELTEVFVNYRRDGSPFMNLLMIAPLMDSR-GSIRYFIGAQVDV 677
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
+ + F L DP PD P+V+AS+ F + T Y + +G+NCRFL G T+ + +++ A
Sbjct: 572 LAEVFCLTDPSRPDNPIVFASEEFARTTQYGMSYAIGRNCRFLQGPRTNPNSVRRLAEAC 631
Query: 310 SPYPKKKSIYMEYVR 324
+ +++ Y R
Sbjct: 632 VAGKELTEVFVNYRR 646
>gi|409203280|ref|ZP_11231483.1| sensor protein [Pseudoalteromonas flavipulchra JG1]
Length = 1103
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 66/126 (52%), Gaps = 5/126 (3%)
Query: 32 TITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP 91
TI D + PIVFA++ F +++ + E++G+N R QG T ++ + EIREAI
Sbjct: 440 TIVDATKPELPIVFANKTFQQITEYGD-EVLGKNCRFLQGEHTQQQALDEIREAIIAHEF 498
Query: 92 IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI---VSRKHMRNSGMSYSE 148
++V L+NY K G FW ++S VF E + T FV +Q I V K +E
Sbjct: 499 VKVELINYTKSGKAFWNNLQISPVFN-EQNQLTAFVGIQQDITAAVEAKKELEQAKQAAE 557
Query: 149 DGGGSR 154
G ++
Sbjct: 558 QGAQAK 563
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 256 LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPYPKK 315
++D P++P+V+A+ F ++T Y +EV+G+NCRFL G T L ++ AI +
Sbjct: 441 IVDATKPELPIVFANKTFQQITEYG-DEVLGKNCRFLQGEHTQQQALDEIREAIIAHEFV 499
Query: 316 KSIYMEYVR 324
K + Y +
Sbjct: 500 KVELINYTK 508
>gi|325982964|ref|YP_004295366.1| PAS sensor protein [Nitrosomonas sp. AL212]
gi|325532483|gb|ADZ27204.1| PAS sensor protein [Nitrosomonas sp. AL212]
Length = 150
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 65/113 (57%), Gaps = 1/113 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
LD + T+ DP P+V+ ++ F ++G++ AE +G+N R QG ++ + ++R
Sbjct: 20 LDSCVNGVTLADPDQEDLPLVYVNKAFEIITGYTLAETVGKNCRFLQGSEHDQSGVKQLR 79
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
EAI+ ++P+EV L NY+K+G F+ +S +F + +F+ VQ I +
Sbjct: 80 EAIKNKKPVEVVLRNYRKNGELFYNHLLVSPLFDSNEN-LLYFLGVQYDITPQ 131
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 38/74 (51%)
Query: 237 GFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296
G I L L L DP D+P+VY + AF +TGY E VG+NCRFL G +
Sbjct: 10 GLIPQVLSKILDSCVNGVTLADPDQEDLPLVYVNKAFEIITGYTLAETVGKNCRFLQGSE 69
Query: 297 TDTTVLYQVSIAIS 310
D + + Q+ AI
Sbjct: 70 HDQSGVKQLREAIK 83
>gi|407684957|ref|YP_006800131.1| response regulator containing a CheY-like receiver domain and a
GGDEF domain [Alteromonas macleodii str. 'English
Channel 673']
gi|407246568|gb|AFT75754.1| response regulator containing a CheY-like receiver domain and a
GGDEF domain [Alteromonas macleodii str. 'English
Channel 673']
Length = 491
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 43 IVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKD 102
I++A+ K + +S E++G R+FQG T++ + + IR+++ ++RP LLNY K
Sbjct: 163 IIYANEALCKHTEYSLEELLGETPRIFQGALTDKASTLRIRQSLIDQRPCTETLLNYTKS 222
Query: 103 GTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
GTPFW+ + E G THF AVQ
Sbjct: 223 GTPFWVQMNI-FPLTNEFGEVTHFAAVQ 249
>gi|53804038|ref|YP_114126.1| sensory box protein [Methylococcus capsulatus str. Bath]
gi|53757799|gb|AAU92090.1| sensory box protein [Methylococcus capsulatus str. Bath]
Length = 853
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 60/112 (53%), Gaps = 1/112 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++ I D G P V+ + ++G+S+ E++ + RM QG T+ ++ EI
Sbjct: 488 AIESASVGINIADAQTKGLPNVYINPALSAITGYSKEELLHHSMRMLQGAGTDPASVEEI 547
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
REAIR R + + NY+KDGTPFW +S V E G TH++ +Q +
Sbjct: 548 REAIRAGRSCRLTIRNYRKDGTPFWNELLISPV-KDEAGVITHYIGIQTDVT 598
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 70/333 (21%), Positives = 135/333 (40%), Gaps = 60/333 (18%)
Query: 18 LWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRR 77
L + A+D+ P I D S I + +RG+ ++G+ E++G R R +R
Sbjct: 238 LMLSSAVDQSPSGVLIAD---SQGCIQYVNRGYTTLTGYGAEELVGT--RCSGAGRADR- 291
Query: 78 TIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+ +RE IR + + +++G +W L ++ + G ATH++ +Q I +K
Sbjct: 292 -LGRLREVIRSGTAWRGEVQDRRRNGEVYWALESITPILDGH-GEATHYLLIQQDITEQK 349
Query: 138 HMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLD-------------RVLALDSD 184
+ + ++ SE+ R R++ E+ + L + D +L + +
Sbjct: 350 RDKEA-LAESEE----RFRQVA------EMAGEWLWEQDPEGRYLYSSAAVRAILGFEPE 398
Query: 185 DTG-------LEIEDSCE-ASDLEKRKAA-TAIDNILSVLTH------YSQLTGRLVCGK 229
+ L ED S L KA+ +++ H Y++ TG + G+
Sbjct: 399 EVRGKHYFDLLTPEDRQHWMSALPPAKASEKPFFRLINRYRHKDGHEVYTESTGAPIFGE 458
Query: 230 RCSLPGMGFISSSL-----YISLGRIKQSFV--------LIDPHLPDMPMVYASDAFLKL 276
R L + + Y R++ + + D +P VY + A +
Sbjct: 459 RGELVKWRGVDHDITTRKRYEDELRVRNRAIESASVGINIADAQTKGLPNVYINPALSAI 518
Query: 277 TGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAI 309
TGY + E++ + R L G TD + ++ AI
Sbjct: 519 TGYSKEELLHHSMRMLQGAGTDPASVEEIREAI 551
>gi|186683928|ref|YP_001867124.1| multi-sensor signal transduction histidine kinase [Nostoc
punctiforme PCC 73102]
gi|186466380|gb|ACC82181.1| multi-sensor signal transduction histidine kinase [Nostoc
punctiforme PCC 73102]
Length = 750
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 73/141 (51%), Gaps = 4/141 (2%)
Query: 29 DSFTITDPSISGHP---IVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+ G P I++ + F +++G+S E++G+ R+ QG +T+R + ++ A
Sbjct: 399 DAVVITEAQPIGEPGPNIIYVNEAFTRITGYSLEEVLGKTPRILQGAKTSRAELDKVWTA 458
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMS 145
+ + V ++NY+KDG+ FW F + V + G TH+++VQ I RK + M+
Sbjct: 459 LSCWETVTVQVINYRKDGSEFWNEFSIVPV-ADQTGWYTHWISVQRDITGRKRLDEIRMA 517
Query: 146 YSEDGGGSRLREIVFGSCRRE 166
+ S L+ F E
Sbjct: 518 LERERELSVLKTRFFSMASHE 538
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 262 PDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAISPY 312
P ++Y ++AF ++TGY EV+G+ R L G T L +V A+S +
Sbjct: 412 PGPNIIYVNEAFTRITGYSLEEVLGKTPRILQGAKTSRAELDKVWTALSCW 462
>gi|456890058|gb|EMG00916.1| PAS domain S-box protein [Leptospira borgpetersenii str. 200701203]
Length = 322
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 70/115 (60%), Gaps = 3/115 (2%)
Query: 24 LDELPDSFTITDPSIS--GHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
++++ DS +TDP + G I+FA+ F KM+G+ + E+IG+ R+ QGP TNR+T+ +
Sbjct: 82 VNQISDSILVTDPQLEFPGPKIIFANPAFCKMTGYLKDELIGQTPRILQGPLTNRKTMRD 141
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
++ ++ + + +NYKKDG+ + + + +S + G+ F+++Q I +
Sbjct: 142 LKRSLTQGKDFSGETINYKKDGSSYNVEWHISAI-QDSSGKILCFISIQRDITEK 195
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 240 SSSLY-ISLGRIKQSFVLIDPHL--PDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296
S LY I + +I S ++ DP L P +++A+ AF K+TGY ++E++GQ R L G
Sbjct: 74 SHELYEILVNQISDSILVTDPQLEFPGPKIIFANPAFCKMTGYLKDELIGQTPRILQGPL 133
Query: 297 TD 298
T+
Sbjct: 134 TN 135
>gi|415963977|ref|ZP_11557939.1| sensory box-containing diguanylate cyclase, putative, partial
[Acidithiobacillus sp. GGI-221]
gi|339832962|gb|EGQ60840.1| sensory box-containing diguanylate cyclase, putative
[Acidithiobacillus sp. GGI-221]
Length = 677
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 67/119 (56%), Gaps = 4/119 (3%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
+++ L D TI DP +++ ++ FLK++G++ E++GR+ + Q P+T+ +T+ +I
Sbjct: 48 SVEALEDGVTIADPQ---RHLIYVNQAFLKLTGYAMKEVLGRDCKFLQAPQTDAQTVRQI 104
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
A+ +E+ ++LN + DGT FW + V + G T F+ +Q I + RN
Sbjct: 105 AIALAQEQSYTGDILNQRNDGTLFWNRLHIDPVLNDQ-GALTGFIGLQRDITQERENRN 162
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 262 PDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSIAIS 310
P ++Y + AFLKLTGY EV+G++C+FL TD + Q++IA++
Sbjct: 61 PQRHLIYVNQAFLKLTGYAMKEVLGRDCKFLQAPQTDAQTVRQIAIALA 109
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.138 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,101,278,714
Number of Sequences: 23463169
Number of extensions: 209563528
Number of successful extensions: 433349
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2645
Number of HSP's successfully gapped in prelim test: 1685
Number of HSP's that attempted gapping in prelim test: 424340
Number of HSP's gapped (non-prelim): 9438
length of query: 325
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 183
effective length of database: 9,027,425,369
effective search space: 1652018842527
effective search space used: 1652018842527
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 77 (34.3 bits)