Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>020516
MYLHITRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNRY
YDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYN
MYEQMVDWLGRPFRSVPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDS
KASMQSRGDTDSLLPIQVWAEIANGLREFRPLFVIPHEKEREGVEDVVGDDASIVFITTP
GQLAALINDSAGVIATNTAAIQLANAREKPSIALFSSELKGRLFVPNAEEKKCTVISSRT
GKLIDTPVEAVLNAMQIFNESLALA

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  020516
        (325 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2200452 - symbol:PnsB1 "Photosynthetic NDH  su...  1290  1.5e-131  1


>TAIR|locus:2200452 [details] [associations]
            symbol:PnsB1 "Photosynthetic NDH  subcomplex B 1"
            species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0009535 "chloroplast thylakoid membrane"
            evidence=IDA] [GO:0009773 "photosynthetic electron transport in
            photosystem I" evidence=IMP] [GO:0010598 "NAD(P)H dehydrogenase
            complex (plastoquinone)" evidence=IMP;IDA] [GO:0009534 "chloroplast
            thylakoid" evidence=IDA] [GO:0006098 "pentose-phosphate shunt"
            evidence=RCA] [GO:0010207 "photosystem II assembly" evidence=RCA]
            [GO:0015979 "photosynthesis" evidence=RCA] [GO:0016117 "carotenoid
            biosynthetic process" evidence=RCA] EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0009535 EMBL:AC010924
            UniGene:At.26234 GO:GO:0009773 GO:GO:0010598 eggNOG:COG0859
            EMBL:AY057703 EMBL:AY084966 EMBL:AY124875 IPI:IPI00538067
            PIR:D86294 RefSeq:NP_563986.1 ProteinModelPortal:Q9S9N6
            STRING:Q9S9N6 PaxDb:Q9S9N6 PRIDE:Q9S9N6 EnsemblPlants:AT1G15980.1
            GeneID:838168 KEGG:ath:AT1G15980 TAIR:At1g15980
            HOGENOM:HOG000030133 InParanoid:Q9S9N6 OMA:NSLADWG PhylomeDB:Q9S9N6
            ProtClustDB:CLSN2687821 Genevestigator:Q9S9N6 Uniprot:Q9S9N6
        Length = 461

 Score = 1290 (459.2 bits), Expect = 1.5e-131, P = 1.5e-131
 Identities = 248/319 (77%), Positives = 280/319 (87%)

Query:     7 RYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNRYYDMVLS 66
             RYPGV +D++ + RGKQT+ELNKNVRWANVYD DD WPEPAEYTD++G++K RYYDMVLS
Sbjct:   142 RYPGVQVDILTTERGKQTYELNKNVRWANVYDPDDHWPEPAEYTDMIGLLKGRYYDMVLS 201

Query:    67 TKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMV 126
             TKLAGLGHAAFLFMTTARDRVSYIYPNVN+AGAGL+LSETFTAE+ NLSE GY+MY QM 
Sbjct:   202 TKLAGLGHAAFLFMTTARDRVSYIYPNVNSAGAGLMLSETFTAENTNLSELGYSMYTQME 261

Query:   127 DWLGRPFRSVPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQS 186
             DWLGRPFRSVPR P+ PLRVSISR++KEVVA KY+NAGA  GK+IVIHGIESDSKASMQS
Sbjct:   262 DWLGRPFRSVPRTPLLPLRVSISRKVKEVVAAKYRNAGAVTGKFIVIHGIESDSKASMQS 321

Query:   187 RGDTDSLLPIQVWAEIANGLREFRPLFVIPHEKEREGVEDVVGDDASIVFITTPGQLAAL 246
             +GD DSLL ++ WA+I  G+R F+P+FVIPHEKERE VED VGDD SIVFITTPGQLAAL
Sbjct:   322 KGDADSLLSLEKWAKIIKGVRGFKPVFVIPHEKERENVEDFVGDDTSIVFITTPGQLAAL 381

Query:   247 INDSAGVIATNTAAIQLANAREKPSIALFSSELKGRLFVPNAEEKK-CTVISSRTGKLID 305
             INDSAGVIATNTAAIQLANAR+KP I LFSSE KG+LFVP AEEK  C +I+S+TGKL D
Sbjct:   382 INDSAGVIATNTAAIQLANARDKPCIGLFSSEEKGKLFVPYAEEKSNCVIIASKTGKLAD 441

Query:   306 TPVEAVLNAMQIFNESLAL 324
               +  V NAMQ+F  SLAL
Sbjct:   442 IDIGTVKNAMQVFEGSLAL 460


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.134   0.385    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      325       325   0.00087  116 3  11 22  0.40    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  206 KB (2116 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  25.27u 0.19s 25.46t   Elapsed:  00:00:01
  Total cpu time:  25.27u 0.19s 25.46t   Elapsed:  00:00:01
  Start:  Thu May  9 19:05:20 2013   End:  Thu May  9 19:05:21 2013

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