BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020516
         (325 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3PPL|A Chain A, Crystal Structure Of An Aspartate Transaminase (Ncgl0237,
           Cgl0240) From Corynebacterium Glutamicum Atcc 13032
           Kitasato At 1.25 A Resolution
 pdb|3PPL|B Chain B, Crystal Structure Of An Aspartate Transaminase (Ncgl0237,
           Cgl0240) From Corynebacterium Glutamicum Atcc 13032
           Kitasato At 1.25 A Resolution
          Length = 427

 Score = 30.0 bits (66), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 11/84 (13%)

Query: 14  DVIASARGKQTFELNKNVRWANVY---DLDDDWPEPAEYTDILGVMK-----NRYYDMVL 65
           DV       +T   +  V W N Y    L D++PE     DI+G+ +     NR++    
Sbjct: 201 DVAKRLSAXETAAPDFRVVWDNAYAVHTLTDEFPE---VIDIVGLGEAAGNPNRFWAFTS 257

Query: 66  STKLAGLGHAAFLFMTTARDRVSY 89
           ++K+   G     F+T+A +R  Y
Sbjct: 258 TSKITLAGAGVSFFLTSAENRKWY 281


>pdb|3C8M|A Chain A, Crystal Structure Of Homoserine Dehydrogenase From
           Thermoplasma Volcanium
          Length = 331

 Score = 28.5 bits (62), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 17/28 (60%)

Query: 22  KQTFELNKNVRWANVYDLDDDWPEPAEY 49
           K+TFE  K+V  AN   L + WPE  EY
Sbjct: 108 KETFENGKDVVTANKSGLANFWPEIXEY 135


>pdb|3JSA|A Chain A, Homoserine Dehydrogenase From Thermoplasma Volcanium
           Complexed With Nad
          Length = 328

 Score = 28.5 bits (62), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 17/28 (60%)

Query: 22  KQTFELNKNVRWANVYDLDDDWPEPAEY 49
           K+TFE  K+V  AN   L + WPE  EY
Sbjct: 105 KETFENGKDVVTANKSGLANFWPEIXEY 132


>pdb|2EW8|A Chain A, Crystal Structure Of The (s)-specific 1-phenylethanol
           Dehydrogenase Of The Denitrifying Bacterium Strain Ebn1
 pdb|2EW8|B Chain B, Crystal Structure Of The (s)-specific 1-phenylethanol
           Dehydrogenase Of The Denitrifying Bacterium Strain Ebn1
 pdb|2EW8|C Chain C, Crystal Structure Of The (s)-specific 1-phenylethanol
           Dehydrogenase Of The Denitrifying Bacterium Strain Ebn1
 pdb|2EW8|D Chain D, Crystal Structure Of The (s)-specific 1-phenylethanol
           Dehydrogenase Of The Denitrifying Bacterium Strain Ebn1
 pdb|2EWM|A Chain A, Crystal Structure Of The (S)-Specific 1-Phenylethanol
           Dehydrogenase Of The Denitrifying Bacterium Strain Ebn1
 pdb|2EWM|B Chain B, Crystal Structure Of The (S)-Specific 1-Phenylethanol
           Dehydrogenase Of The Denitrifying Bacterium Strain Ebn1
          Length = 249

 Score = 27.7 bits (60), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 57/140 (40%), Gaps = 20/140 (14%)

Query: 8   YPGVLIDVIASARGKQTFELNKNVRW----ANVYDLD-DDWPEPAEYTDILGVMKNRYYD 62
           YP +  D +   + K+TFE+N +  +    A V  +  + W      T     +K   Y 
Sbjct: 93  YPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLKIEAYT 152

Query: 63  MVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMY 122
             +STK A +G    L     +D ++     VNA    L+ + T  A +++         
Sbjct: 153 HYISTKAANIGFTRALASDLGKDGIT-----VNAIAPSLVRTATTEASALS--------- 198

Query: 123 EQMVDWLGRPFRSVPRHPVP 142
             M D L    +++PR  VP
Sbjct: 199 -AMFDVLPNMLQAIPRLQVP 217


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.134    0.385 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,191,704
Number of Sequences: 62578
Number of extensions: 371284
Number of successful extensions: 869
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 867
Number of HSP's gapped (non-prelim): 6
length of query: 325
length of database: 14,973,337
effective HSP length: 99
effective length of query: 226
effective length of database: 8,778,115
effective search space: 1983853990
effective search space used: 1983853990
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)