BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020516
(325 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q1GZ11|CCA_METFK Multifunctional CCA protein OS=Methylobacillus flagellatus (strain
KT / ATCC 51484 / DSM 6875) GN=cca PE=3 SV=1
Length = 411
Score = 38.5 bits (88), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 69/169 (40%), Gaps = 30/169 (17%)
Query: 184 MQSRGDTDSLLPIQVWAEIANGLREFRP----------------------LFVIP----- 216
M G+ D+L+P +VW E+A GL E RP LF +P
Sbjct: 161 MVEDGEVDALVPERVWQELAKGLMEQRPSRMFEVLRACGALKRLLPELDRLFGVPQTAKY 220
Query: 217 HEKEREGVE-DVVGDDASIVFITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIALF 275
H + GV +V D A+ + P + AAL +D G T + E+ S+ L
Sbjct: 221 HPEIDTGVHVMLVIDYAARAGFSLPVRFAALTHD-LGKGTTPAHILPRHIGHEERSVELL 279
Query: 276 SSELKGRLFVPNAEEKKCTVISSRTGKLIDTPVEAVLNAMQIFNESLAL 324
S +K RL VPN + +++ GK+ ++ E+ AL
Sbjct: 280 QSLVK-RLRVPNDCKDLALLVAKHHGKVHQVGEMKAATVLRFLQETDAL 327
>sp|A5G9V4|YIDC_GEOUR Membrane protein insertase YidC OS=Geobacter uraniireducens (strain
Rf4) GN=yidC PE=3 SV=1
Length = 528
Score = 35.4 bits (80), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%)
Query: 152 LKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLR 207
LK++V ++YK G+ +V+ E+ K S+ + G + + P V+ I+NGL+
Sbjct: 86 LKKLVLKRYKETSGPGGREVVLVNEEAAEKFSLLTEGKSFGIEPTVVYNSISNGLK 141
>sp|A6T2Y3|CCA_JANMA Multifunctional CCA protein OS=Janthinobacterium sp. (strain
Marseille) GN=cca PE=3 SV=1
Length = 416
Score = 34.7 bits (78), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 183 SMQSRGDTDSLLPIQVWAEIANGLREFRP 211
M + G+ D+L+P +VW E+A GL E RP
Sbjct: 160 DMVTAGEVDALVPERVWQELARGLMEVRP 188
>sp|Q8Y395|CCA_RALSO Multifunctional CCA protein OS=Ralstonia solanacearum (strain
GMI1000) GN=cca PE=3 SV=1
Length = 429
Score = 34.7 bits (78), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 5/45 (11%)
Query: 176 IESDSKASMQ---SRGDTDSLLPIQVWAEIANGLREFRP--LFVI 215
+ +++A MQ G+ D+L+P +VW E+A GL E RP LF +
Sbjct: 175 VAPETRALMQRMAEAGEVDALVPERVWQELARGLLEARPSRLFAV 219
>sp|B2AGH1|CCA_CUPTR Multifunctional CCA protein OS=Cupriavidus taiwanensis (strain R1 /
LMG 19424) GN=cca PE=3 SV=1
Length = 415
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 183 SMQSRGDTDSLLPIQVWAEIANGLREFRP 211
M + G+ D+L+P +VW E+A GL E RP
Sbjct: 166 EMVAAGEVDALVPERVWQELARGLMEARP 194
>sp|Q476S9|CCA_CUPPJ Multifunctional CCA protein OS=Cupriavidus pinatubonensis (strain
JMP134 / LMG 1197) GN=cca PE=3 SV=1
Length = 415
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 184 MQSRGDTDSLLPIQVWAEIANGLREFRP 211
M G+ D+L+P +VW E+A GL E RP
Sbjct: 167 MVDAGEVDALVPERVWQELARGLMEARP 194
>sp|A1V7S8|CCA_BURMS Multifunctional CCA protein OS=Burkholderia mallei (strain SAVP1)
GN=cca PE=3 SV=1
Length = 413
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 59/149 (39%), Gaps = 30/149 (20%)
Query: 183 SMQSRGDTDSLLPIQVWAEIANGLREFRP----------------------LFVIP---- 216
+M G+ D+L+P +VW E+A GL E +P LF +P
Sbjct: 166 AMVDAGEVDALVPERVWQELARGLMEAKPSRMFAVLRECGALARILPEIDALFGVPQRAD 225
Query: 217 -HEKEREGVE-DVVGDDASIVFITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIAL 274
H + GV +V D A+ + P + AAL +D G T + E S+ L
Sbjct: 226 YHPEVDTGVHVMMVIDHAAKQGYSLPVRFAALTHD-LGKATTPADVLPRHIGHEGRSVDL 284
Query: 275 FSSELKGRLFVPNAEEKKCTVISSRTGKL 303
L RL VPN V++ G L
Sbjct: 285 LKP-LCERLRVPNECRDLALVVAREHGNL 312
>sp|Q62EU1|CCA_BURMA Multifunctional CCA protein OS=Burkholderia mallei (strain ATCC
23344) GN=cca PE=3 SV=1
Length = 413
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 59/149 (39%), Gaps = 30/149 (20%)
Query: 183 SMQSRGDTDSLLPIQVWAEIANGLREFRP----------------------LFVIP---- 216
+M G+ D+L+P +VW E+A GL E +P LF +P
Sbjct: 166 AMVDAGEVDALVPERVWQELARGLMEAKPSRMFAVLRECGALARILPEIDALFGVPQRAD 225
Query: 217 -HEKEREGVE-DVVGDDASIVFITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIAL 274
H + GV +V D A+ + P + AAL +D G T + E S+ L
Sbjct: 226 YHPEVDTGVHVMMVIDHAAKQGYSLPVRFAALTHD-LGKATTPADVLPRHIGHEGRSVDL 284
Query: 275 FSSELKGRLFVPNAEEKKCTVISSRTGKL 303
L RL VPN V++ G L
Sbjct: 285 LKP-LCERLRVPNECRDLALVVAREHGNL 312
>sp|A2S800|CCA_BURM9 Multifunctional CCA protein OS=Burkholderia mallei (strain NCTC
10229) GN=cca PE=3 SV=1
Length = 413
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 59/149 (39%), Gaps = 30/149 (20%)
Query: 183 SMQSRGDTDSLLPIQVWAEIANGLREFRP----------------------LFVIP---- 216
+M G+ D+L+P +VW E+A GL E +P LF +P
Sbjct: 166 AMVDAGEVDALVPERVWQELARGLMEAKPSRMFAVLRECGALARILPEIDALFGVPQRAD 225
Query: 217 -HEKEREGVE-DVVGDDASIVFITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIAL 274
H + GV +V D A+ + P + AAL +D G T + E S+ L
Sbjct: 226 YHPEVDTGVHVMMVIDHAAKQGYSLPVRFAALTHD-LGKATTPADVLPRHIGHEGRSVDL 284
Query: 275 FSSELKGRLFVPNAEEKKCTVISSRTGKL 303
L RL VPN V++ G L
Sbjct: 285 LKP-LCERLRVPNECRDLALVVAREHGNL 312
>sp|A3MRJ1|CCA_BURM7 Multifunctional CCA protein OS=Burkholderia mallei (strain NCTC
10247) GN=cca PE=3 SV=1
Length = 413
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 59/149 (39%), Gaps = 30/149 (20%)
Query: 183 SMQSRGDTDSLLPIQVWAEIANGLREFRP----------------------LFVIP---- 216
+M G+ D+L+P +VW E+A GL E +P LF +P
Sbjct: 166 AMVDAGEVDALVPERVWQELARGLMEAKPSRMFAVLRECGALARILPEIDALFGVPQRAD 225
Query: 217 -HEKEREGVE-DVVGDDASIVFITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIAL 274
H + GV +V D A+ + P + AAL +D G T + E S+ L
Sbjct: 226 YHPEVDTGVHVMMVIDHAAKQGYSLPVRFAALTHD-LGKATTPADVLPRHIGHEGRSVDL 284
Query: 275 FSSELKGRLFVPNAEEKKCTVISSRTGKL 303
L RL VPN V++ G L
Sbjct: 285 LKP-LCERLRVPNECRDLALVVAREHGNL 312
>sp|A3N4P2|CCA_BURP6 Multifunctional CCA protein OS=Burkholderia pseudomallei (strain
668) GN=cca PE=3 SV=1
Length = 413
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 59/149 (39%), Gaps = 30/149 (20%)
Query: 183 SMQSRGDTDSLLPIQVWAEIANGLREFRP----------------------LFVIP---- 216
+M G+ D+L+P +VW E+A GL E +P LF +P
Sbjct: 166 AMVDAGEVDALVPERVWQELARGLMEAKPSRMFAVLRECGALARILPEIDALFGVPQRAD 225
Query: 217 -HEKEREGVE-DVVGDDASIVFITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIAL 274
H + GV +V D A+ + P + AAL +D G T + E S+ L
Sbjct: 226 YHPEVDTGVHVMMVIDHAAKQGYSLPVRFAALTHD-LGKATTPADVLPRHIGHEGRSVDL 284
Query: 275 FSSELKGRLFVPNAEEKKCTVISSRTGKL 303
L RL VPN V++ G L
Sbjct: 285 LKP-LCERLRVPNECRDLALVVAREHGNL 312
>sp|A0KBA2|CCA_BURCH Multifunctional CCA protein OS=Burkholderia cenocepacia (strain
HI2424) GN=cca PE=3 SV=1
Length = 413
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 184 MQSRGDTDSLLPIQVWAEIANGLREFRP 211
M G+ D+L+P +VW EIA GL E +P
Sbjct: 167 MVDAGEVDALVPERVWQEIARGLMEAKP 194
>sp|Q1BST9|CCA_BURCA Multifunctional CCA protein OS=Burkholderia cenocepacia (strain AU
1054) GN=cca PE=3 SV=1
Length = 413
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 184 MQSRGDTDSLLPIQVWAEIANGLREFRP 211
M G+ D+L+P +VW EIA GL E +P
Sbjct: 167 MVDAGEVDALVPERVWQEIARGLMEAKP 194
>sp|Q39C44|CCA_BURS3 Multifunctional CCA protein OS=Burkholderia sp. (strain 383) GN=cca
PE=3 SV=1
Length = 413
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 184 MQSRGDTDSLLPIQVWAEIANGLREFRP 211
M G+ D+L+P +VW EIA GL E +P
Sbjct: 167 MVDAGEVDALVPERVWQEIARGLMEAKP 194
>sp|B4E8K1|CCA_BURCJ Multifunctional CCA protein OS=Burkholderia cepacia (strain J2315 /
LMG 16656) GN=cca PE=3 SV=1
Length = 413
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 184 MQSRGDTDSLLPIQVWAEIANGLREFRP 211
M G+ D+L+P +VW EIA GL E +P
Sbjct: 167 MVDAGEVDALVPERVWQEIARGLMEAKP 194
>sp|B1JZZ7|CCA_BURCC Multifunctional CCA protein OS=Burkholderia cenocepacia (strain
MC0-3) GN=cca PE=3 SV=1
Length = 413
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 184 MQSRGDTDSLLPIQVWAEIANGLREFRP 211
M G+ D+L+P +VW EIA GL E +P
Sbjct: 167 MVDAGEIDALVPERVWQEIARGLMEAKP 194
>sp|Q63YC3|CCA_BURPS Multifunctional CCA protein OS=Burkholderia pseudomallei (strain
K96243) GN=cca PE=3 SV=1
Length = 413
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 183 SMQSRGDTDSLLPIQVWAEIANGLREFRP 211
+M G+ D+L+P +VW E+A GL E +P
Sbjct: 166 AMVDAGEVDALVPERVWQELARGLMEAKP 194
>sp|A3NQD4|CCA_BURP0 Multifunctional CCA protein OS=Burkholderia pseudomallei (strain
1106a) GN=cca PE=3 SV=1
Length = 413
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 183 SMQSRGDTDSLLPIQVWAEIANGLREFRP 211
+M G+ D+L+P +VW E+A GL E +P
Sbjct: 166 AMVDAGEVDALVPERVWQELARGLMEAKP 194
>sp|Q82U82|CCA_NITEU Multifunctional CCA protein OS=Nitrosomonas europaea (strain ATCC
19718 / NBRC 14298) GN=cca PE=3 SV=1
Length = 412
Score = 32.7 bits (73), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 188 GDTDSLLPIQVWAEIANGLREFRP 211
G+T++L+P +VW EIA+GL E P
Sbjct: 164 GETEALVPERVWQEIAHGLMESHP 187
>sp|Q0KF16|CCA_CUPNH Multifunctional CCA protein OS=Cupriavidus necator (strain ATCC
17699 / H16 / DSM 428 / Stanier 337) GN=cca PE=3 SV=1
Length = 411
Score = 32.7 bits (73), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 184 MQSRGDTDSLLPIQVWAEIANGLREFRP 211
M + G+ D+L+P +VW E+A GL E +P
Sbjct: 167 MVAAGEVDALVPERVWQELARGLMEAKP 194
>sp|C5CNM3|CCA_VARPS Multifunctional CCA protein OS=Variovorax paradoxus (strain S110)
GN=cca PE=3 SV=1
Length = 419
Score = 32.3 bits (72), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 184 MQSRGDTDSLLPIQVWAEIANGLREFRP 211
M G+ D+L+P +VW E++ GL E RP
Sbjct: 173 MVQAGEADALVPERVWQELSRGLMETRP 200
>sp|Q477X0|CCA_DECAR Multifunctional CCA protein OS=Dechloromonas aromatica (strain RCB)
GN=cca PE=3 SV=1
Length = 412
Score = 32.3 bits (72), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 30/133 (22%)
Query: 183 SMQSRGDTDSLLPIQVWAEIANGLREFRP----------------------LFVIP---- 216
SM + G+ D L+ +VW E+A GL E +P LF +P
Sbjct: 160 SMVACGEVDHLVAERVWQELAKGLMEQKPSRMFEVLRDCGALARLLPEVDKLFGVPQRAD 219
Query: 217 -HEKEREGVED-VVGDDASIVFITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIAL 274
H + G+ +V D ++ T P + AAL +D G T + E+ S+ L
Sbjct: 220 YHPEIDTGIHTMMVIDQSARRTFTLPVRFAALTHD-LGKAETPADILPRHIGHEERSVRL 278
Query: 275 FSSELKGRLFVPN 287
+ +L RL VPN
Sbjct: 279 -TEQLCARLRVPN 290
>sp|A9ABP3|CCA_BURM1 Multifunctional CCA protein OS=Burkholderia multivorans (strain
ATCC 17616 / 249) GN=cca PE=3 SV=1
Length = 413
Score = 32.3 bits (72), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 184 MQSRGDTDSLLPIQVWAEIANGLREFRP 211
M G+ D+L+P +VW E+A GL E +P
Sbjct: 167 MVDAGEVDALVPERVWQELARGLMEAKP 194
>sp|B1Y634|CCA_LEPCP Multifunctional CCA protein OS=Leptothrix cholodnii (strain ATCC
51168 / LMG 8142 / SP-6) GN=cca PE=3 SV=1
Length = 419
Score = 32.0 bits (71), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 184 MQSRGDTDSLLPIQVWAEIANGLREFRP 211
M G+ D+L+P +VW E++ GL E RP
Sbjct: 161 MVEAGEVDALVPERVWQELSRGLMEARP 188
>sp|A4JIK4|CCA_BURVG Multifunctional CCA protein OS=Burkholderia vietnamiensis (strain
G4 / LMG 22486) GN=cca PE=3 SV=1
Length = 413
Score = 32.0 bits (71), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 184 MQSRGDTDSLLPIQVWAEIANGLREFRP 211
M G+ D+L+P +VW EIA GL E P
Sbjct: 167 MVDAGEADALVPERVWQEIARGLMEATP 194
>sp|A4G969|CCA_HERAR Multifunctional CCA protein OS=Herminiimonas arsenicoxydans GN=cca
PE=3 SV=1
Length = 414
Score = 32.0 bits (71), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 176 IESDSKASMQSR---GDTDSLLPIQVWAEIANGLREFRP 211
+ +++ A MQ+ G+ D+L+P + W E+A GL E +P
Sbjct: 150 VAAETNALMQAMVAAGEVDALVPERTWQELARGLMEVQP 188
>sp|Q8NXH0|CSD_STAAW Probable cysteine desulfurase OS=Staphylococcus aureus (strain MW2)
GN=csd PE=3 SV=1
Length = 413
Score = 31.6 bits (70), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 15/133 (11%)
Query: 155 VVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFRPLFV 214
+VA Y +A E+G IV+ +E + +++P Q A+ N +F P+
Sbjct: 103 LVAHSYGDANVEEGDEIVVTEMEHHA-----------NIVPWQQLAKRKNATLKFIPM-T 150
Query: 215 IPHEKEREGVEDVVGDDASIVFITTPGQLAALINDS---AGVIATNTAAIQLANAREKPS 271
E E ++ + D IV I + IND A + + A I + A+ P
Sbjct: 151 ADGELNIEDIKQTINDKTKIVAIAHISNVLGTINDVKTIAEIAHQHGAIISVDGAQAAPH 210
Query: 272 IALFSSELKGRLF 284
+ L E+ +
Sbjct: 211 MKLDMQEMNADFY 223
>sp|Q6GB11|CSD_STAAS Probable cysteine desulfurase OS=Staphylococcus aureus (strain
MSSA476) GN=csd PE=3 SV=1
Length = 413
Score = 31.6 bits (70), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 15/133 (11%)
Query: 155 VVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFRPLFV 214
+VA Y +A E+G IV+ +E + +++P Q A+ N +F P+
Sbjct: 103 LVAHSYGDANVEEGDEIVVTEMEHHA-----------NIVPWQQLAKRKNATLKFIPM-T 150
Query: 215 IPHEKEREGVEDVVGDDASIVFITTPGQLAALINDS---AGVIATNTAAIQLANAREKPS 271
E E ++ + D IV I + IND A + + A I + A+ P
Sbjct: 151 ADGELNIEDIKQTINDKTKIVAIAHISNVLGTINDVKTIAEIAHQHGAIISVDGAQAAPH 210
Query: 272 IALFSSELKGRLF 284
+ L E+ +
Sbjct: 211 MKLDMQEMNADFY 223
>sp|Q6GIH2|CSD_STAAR Probable cysteine desulfurase OS=Staphylococcus aureus (strain
MRSA252) GN=csd PE=3 SV=1
Length = 413
Score = 31.6 bits (70), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 15/133 (11%)
Query: 155 VVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFRPLFV 214
+VA Y +A E+G IV+ +E + +++P Q A+ N +F P+
Sbjct: 103 LVAHSYGDANVEEGDEIVVTEMEHHA-----------NIVPWQQLAKRKNATLKFIPM-T 150
Query: 215 IPHEKEREGVEDVVGDDASIVFITTPGQLAALINDS---AGVIATNTAAIQLANAREKPS 271
E E ++ + D IV I + IND A + + A I + A+ P
Sbjct: 151 ADGELNIEDIKQTINDKTKIVAIAHISNVLGTINDVKTIAEIAHQHGAIISVDGAQAAPH 210
Query: 272 IALFSSELKGRLF 284
+ L E+ +
Sbjct: 211 MKLDMQEMNADFY 223
>sp|Q5HHH0|CSD_STAAC Probable cysteine desulfurase OS=Staphylococcus aureus (strain COL)
GN=csd PE=3 SV=1
Length = 413
Score = 31.6 bits (70), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 15/133 (11%)
Query: 155 VVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFRPLFV 214
+VA Y +A E+G IV+ +E + +++P Q A+ N +F P+
Sbjct: 103 LVAHSYGDANVEEGDEIVVTEMEHHA-----------NIVPWQQLAKRKNATLKFIPM-T 150
Query: 215 IPHEKEREGVEDVVGDDASIVFITTPGQLAALINDS---AGVIATNTAAIQLANAREKPS 271
E E ++ + D IV I + IND A + + A I + A+ P
Sbjct: 151 ADGELNIEDIKQTINDKTKIVAIAHISNVLGTINDVKTIAEIAHQHGAIISVDGAQAAPH 210
Query: 272 IALFSSELKGRLF 284
+ L E+ +
Sbjct: 211 MKLDMQEMNADFY 223
>sp|A1VSY7|CCA_POLNA Multifunctional CCA protein OS=Polaromonas naphthalenivorans
(strain CJ2) GN=cca PE=3 SV=1
Length = 424
Score = 31.6 bits (70), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 184 MQSRGDTDSLLPIQVWAEIANGLREFRP 211
M + G+ D L+P +VW E+A GL E +P
Sbjct: 173 MVTDGEVDGLVPERVWQELARGLMEDKP 200
>sp|P99177|CSD_STAAN Probable cysteine desulfurase OS=Staphylococcus aureus (strain
N315) GN=csd PE=1 SV=1
Length = 413
Score = 31.6 bits (70), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 15/133 (11%)
Query: 155 VVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFRPLFV 214
+VA Y +A E+G IV+ +E + +++P Q A+ N +F P+
Sbjct: 103 LVAHSYGDANVEEGDEIVVTEMEHHA-----------NIVPWQQLAKRKNATLKFIPM-T 150
Query: 215 IPHEKEREGVEDVVGDDASIVFITTPGQLAALINDS---AGVIATNTAAIQLANAREKPS 271
E E ++ + D IV I + IND A + + A I + A+ P
Sbjct: 151 ADGELNIEDIKQTINDKTKIVAIAHISNVLGTINDVKTIAEIAHQHGAIISVDGAQAAPH 210
Query: 272 IALFSSELKGRLF 284
+ L E+ +
Sbjct: 211 MKLDMQEMNADFY 223
>sp|P63518|CSD_STAAM Probable cysteine desulfurase OS=Staphylococcus aureus (strain Mu50
/ ATCC 700699) GN=csd PE=1 SV=1
Length = 413
Score = 31.6 bits (70), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 15/133 (11%)
Query: 155 VVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFRPLFV 214
+VA Y +A E+G IV+ +E + +++P Q A+ N +F P+
Sbjct: 103 LVAHSYGDANVEEGDEIVVTEMEHHA-----------NIVPWQQLAKRKNATLKFIPM-T 150
Query: 215 IPHEKEREGVEDVVGDDASIVFITTPGQLAALINDS---AGVIATNTAAIQLANAREKPS 271
E E ++ + D IV I + IND A + + A I + A+ P
Sbjct: 151 ADGELNIEDIKQTINDKTKIVAIAHISNVLGTINDVKTIAEIAHQHGAIISVDGAQAAPH 210
Query: 272 IALFSSELKGRLF 284
+ L E+ +
Sbjct: 211 MKLDMQEMNADFY 223
>sp|B2JIM3|CCA_BURP8 Multifunctional CCA protein OS=Burkholderia phymatum (strain DSM
17167 / STM815) GN=cca PE=3 SV=1
Length = 417
Score = 31.2 bits (69), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 183 SMQSRGDTDSLLPIQVWAEIANGLREFRP 211
M G+ D+L+P +VW E++ GL E +P
Sbjct: 166 KMVEAGEVDALVPERVWQEVSRGLMEKKP 194
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,629,505
Number of Sequences: 539616
Number of extensions: 4812437
Number of successful extensions: 12866
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 12838
Number of HSP's gapped (non-prelim): 36
length of query: 325
length of database: 191,569,459
effective HSP length: 118
effective length of query: 207
effective length of database: 127,894,771
effective search space: 26474217597
effective search space used: 26474217597
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)