Query 020516
Match_columns 325
No_of_seqs 101 out of 1114
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 03:01:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020516.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020516hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10422 lipopolysaccharide co 100.0 2E-53 4.3E-58 397.3 29.4 297 1-322 26-346 (352)
2 TIGR02201 heptsyl_trn_III lipo 100.0 1.8E-53 4E-58 396.5 28.2 297 1-319 20-343 (344)
3 PRK10916 ADP-heptose:LPS hepto 100.0 5.2E-53 1.1E-57 394.0 29.6 298 1-321 21-345 (348)
4 TIGR02195 heptsyl_trn_II lipop 100.0 8.2E-53 1.8E-57 390.6 30.1 293 1-319 20-333 (334)
5 PRK10964 ADP-heptose:LPS hepto 100.0 3.3E-51 7E-56 378.0 25.9 289 1-319 21-320 (322)
6 TIGR02193 heptsyl_trn_I lipopo 100.0 4.1E-50 8.8E-55 370.3 24.5 288 1-318 20-318 (319)
7 COG0859 RfaF ADP-heptose:LPS h 100.0 3.8E-47 8.2E-52 351.9 25.7 292 1-320 22-331 (334)
8 cd03789 GT1_LPS_heptosyltransf 100.0 1.7E-41 3.7E-46 307.2 25.4 237 1-316 20-278 (279)
9 PF01075 Glyco_transf_9: Glyco 100.0 9.4E-39 2E-43 284.1 15.6 229 49-306 1-237 (247)
10 TIGR03568 NeuC_NnaA UDP-N-acet 99.1 1.3E-09 2.9E-14 102.3 15.9 104 159-274 191-306 (365)
11 PRK10017 colanic acid biosynth 98.5 6.1E-06 1.3E-10 78.9 15.3 117 197-320 260-391 (426)
12 PRK00025 lpxB lipid-A-disaccha 98.1 8.7E-06 1.9E-10 76.7 8.7 106 160-278 177-290 (380)
13 PF04007 DUF354: Protein of un 97.9 0.00079 1.7E-08 62.3 16.8 235 10-278 27-277 (335)
14 PF02684 LpxB: Lipid-A-disacch 97.8 0.0006 1.3E-08 64.0 13.5 289 1-321 18-340 (373)
15 cd03786 GT1_UDP-GlcNAc_2-Epime 97.7 0.0014 3E-08 61.2 14.3 79 197-275 218-303 (363)
16 TIGR03590 PseG pseudaminic aci 97.6 0.023 4.9E-07 51.4 20.5 68 211-278 201-270 (279)
17 cd03807 GT1_WbnK_like This fam 97.6 0.009 1.9E-07 54.5 18.2 101 161-273 185-297 (365)
18 TIGR03492 conserved hypothetic 97.5 0.0054 1.2E-07 58.4 16.4 103 167-279 204-326 (396)
19 PRK01021 lpxB lipid-A-disaccha 97.5 0.0012 2.7E-08 65.0 11.8 109 160-279 404-518 (608)
20 PRK13609 diacylglycerol glucos 97.5 0.0034 7.5E-08 59.1 14.6 99 160-274 193-299 (380)
21 PRK13608 diacylglycerol glucos 97.3 0.0078 1.7E-07 57.1 14.5 77 198-275 217-300 (391)
22 PRK05749 3-deoxy-D-manno-octul 97.2 0.018 4E-07 55.1 16.7 77 2-87 71-152 (425)
23 PRK12446 undecaprenyldiphospho 97.2 0.022 4.8E-07 53.3 15.9 75 197-274 202-278 (352)
24 cd04951 GT1_WbdM_like This fam 97.2 0.049 1.1E-06 50.1 18.2 102 160-273 179-291 (360)
25 cd03785 GT1_MurG MurG is an N- 97.1 0.083 1.8E-06 48.8 19.3 76 200-275 201-279 (350)
26 cd03819 GT1_WavL_like This fam 97.1 0.094 2E-06 48.2 19.2 103 160-274 176-294 (355)
27 COG0763 LpxB Lipid A disacchar 97.0 0.006 1.3E-07 56.6 10.2 257 1-282 21-297 (381)
28 TIGR03088 stp2 sugar transfera 97.0 0.041 8.9E-07 51.4 16.1 78 196-273 209-301 (374)
29 COG0707 MurG UDP-N-acetylgluco 96.9 0.22 4.7E-06 46.7 19.7 137 167-320 182-323 (357)
30 PLN02605 monogalactosyldiacylg 96.9 0.044 9.6E-07 51.8 15.3 35 241-275 274-309 (382)
31 TIGR00236 wecB UDP-N-acetylglu 96.9 0.043 9.3E-07 51.4 15.1 81 196-276 214-301 (365)
32 cd03811 GT1_WabH_like This fam 96.5 0.5 1.1E-05 42.4 19.2 80 195-274 203-293 (353)
33 COG1817 Uncharacterized protei 96.4 0.08 1.7E-06 47.9 12.5 199 50-276 74-279 (346)
34 TIGR00215 lpxB lipid-A-disacch 96.3 0.079 1.7E-06 50.2 13.1 148 161-320 183-346 (385)
35 cd03820 GT1_amsD_like This fam 96.3 0.74 1.6E-05 41.3 20.0 80 195-274 192-282 (348)
36 PRK00726 murG undecaprenyldiph 96.2 0.42 9.1E-06 44.4 17.1 36 241-276 244-280 (357)
37 cd03812 GT1_CapH_like This fam 96.1 0.54 1.2E-05 43.2 17.4 135 163-321 186-331 (358)
38 PF02350 Epimerase_2: UDP-N-ac 96.1 0.017 3.7E-07 53.9 6.9 114 196-321 199-318 (346)
39 cd03798 GT1_wlbH_like This fam 96.0 0.7 1.5E-05 41.8 17.5 81 194-274 215-308 (377)
40 cd03808 GT1_cap1E_like This fa 95.9 0.46 9.9E-06 42.9 15.6 80 195-274 202-293 (359)
41 PF13528 Glyco_trans_1_3: Glyc 95.5 0.58 1.2E-05 42.7 14.7 73 241-318 242-317 (318)
42 COG2327 WcaK Polysaccharide py 94.7 1.5 3.2E-05 41.3 14.6 61 218-278 249-314 (385)
43 TIGR03609 S_layer_CsaB polysac 94.6 0.2 4.4E-06 45.5 8.8 78 197-274 191-275 (298)
44 TIGR01426 MGT glycosyltransfer 94.5 0.46 1E-05 44.9 11.4 132 167-320 224-358 (392)
45 PRK15490 Vi polysaccharide bio 94.5 2 4.4E-05 42.6 15.6 81 197-277 414-505 (578)
46 TIGR00661 MJ1255 conserved hyp 94.4 3.2 6.8E-05 38.1 16.2 37 241-277 239-276 (321)
47 TIGR01133 murG undecaprenyldip 94.2 1.3 2.8E-05 40.8 13.4 73 201-275 200-277 (348)
48 COG0381 WecB UDP-N-acetylgluco 94.1 5.2 0.00011 37.6 17.1 85 194-279 217-311 (383)
49 cd03795 GT1_like_4 This family 93.9 5 0.00011 36.5 19.0 78 195-273 205-294 (357)
50 cd03817 GT1_UGDG_like This fam 93.8 0.68 1.5E-05 42.1 10.8 82 194-275 215-309 (374)
51 cd04962 GT1_like_5 This family 93.7 0.91 2E-05 42.0 11.4 101 162-274 190-300 (371)
52 PF06258 Mito_fiss_Elm1: Mitoc 93.7 3 6.6E-05 38.3 14.4 121 148-278 125-259 (311)
53 COG3660 Predicted nucleoside-d 93.4 1.6 3.5E-05 38.7 11.4 110 160-279 153-276 (329)
54 cd03801 GT1_YqgM_like This fam 93.4 2.7 5.9E-05 37.7 13.8 82 195-276 213-307 (374)
55 cd03784 GT1_Gtf_like This fami 92.9 0.51 1.1E-05 44.6 8.6 90 167-274 238-330 (401)
56 PRK15179 Vi polysaccharide bio 92.9 6.9 0.00015 40.2 16.8 80 196-275 532-622 (694)
57 PRK14089 ipid-A-disaccharide s 92.8 0.21 4.6E-06 46.6 5.6 102 167-281 166-267 (347)
58 cd03794 GT1_wbuB_like This fam 92.4 1.5 3.3E-05 40.0 10.8 85 194-278 233-333 (394)
59 PF00534 Glycos_transf_1: Glyc 91.7 5.6 0.00012 32.3 12.4 136 163-321 9-158 (172)
60 cd03799 GT1_amsK_like This is 91.4 3.9 8.5E-05 37.2 12.3 80 195-274 193-291 (355)
61 PRK10307 putative glycosyl tra 91.3 2.2 4.8E-05 40.5 10.8 104 160-275 220-338 (412)
62 PRK15484 lipopolysaccharide 1, 90.9 13 0.00029 34.9 15.6 83 195-277 207-310 (380)
63 cd03814 GT1_like_2 This family 90.8 2.6 5.6E-05 38.3 10.5 81 194-277 210-299 (364)
64 cd01635 Glycosyltransferase_GT 90.8 1.7 3.7E-05 36.5 8.7 87 195-281 118-218 (229)
65 cd03823 GT1_ExpE7_like This fa 90.8 2.9 6.3E-05 37.8 10.8 79 195-273 205-292 (359)
66 COG3980 spsG Spore coat polysa 90.8 3.8 8.3E-05 36.8 10.7 93 167-274 157-252 (318)
67 PF04101 Glyco_tran_28_C: Glyc 90.4 0.28 6.2E-06 40.3 3.3 64 211-274 33-98 (167)
68 cd05844 GT1_like_7 Glycosyltra 90.0 5.3 0.00011 36.7 11.9 78 196-273 203-299 (367)
69 TIGR02095 glgA glycogen/starch 89.8 4.4 9.4E-05 39.4 11.6 79 195-273 305-394 (473)
70 PF05159 Capsule_synth: Capsul 89.8 1.6 3.4E-05 39.1 7.8 86 195-282 138-231 (269)
71 cd03825 GT1_wcfI_like This fam 89.7 4.5 9.8E-05 36.9 11.1 78 194-275 206-295 (365)
72 TIGR03449 mycothiol_MshA UDP-N 89.5 5 0.00011 37.7 11.6 80 196-275 234-333 (405)
73 PF13692 Glyco_trans_1_4: Glyc 89.4 0.95 2.1E-05 35.3 5.5 109 195-320 16-134 (135)
74 PRK15427 colanic acid biosynth 88.7 7.7 0.00017 36.9 12.1 83 195-277 236-337 (406)
75 cd04955 GT1_like_6 This family 88.6 19 0.00041 32.8 22.0 80 195-274 207-298 (363)
76 cd03800 GT1_Sucrose_synthase T 88.5 5 0.00011 37.3 10.7 80 195-274 234-332 (398)
77 PF04230 PS_pyruv_trans: Polys 88.4 2.1 4.6E-05 37.4 7.7 82 194-275 190-283 (286)
78 TIGR02149 glgA_Coryne glycogen 88.0 11 0.00024 35.0 12.7 80 195-274 215-310 (388)
79 cd03822 GT1_ecORF704_like This 87.9 20 0.00044 32.3 18.9 79 195-273 199-298 (366)
80 cd03796 GT1_PIG-A_like This fa 87.1 5.4 0.00012 37.6 10.1 79 196-274 208-299 (398)
81 cd03804 GT1_wbaZ_like This fam 86.3 12 0.00027 34.3 11.8 75 198-274 209-290 (351)
82 cd03821 GT1_Bme6_like This fam 86.3 7.6 0.00017 35.1 10.3 80 195-274 217-311 (375)
83 cd03792 GT1_Trehalose_phosphor 85.1 17 0.00036 33.9 12.1 103 160-274 181-303 (372)
84 PLN02871 UDP-sulfoquinovose:DA 84.7 9.9 0.00021 36.8 10.7 77 196-274 278-361 (465)
85 COG1105 FruK Fructose-1-phosph 84.5 11 0.00023 34.6 10.0 89 143-248 106-194 (310)
86 TIGR02918 accessory Sec system 83.3 49 0.0011 32.6 18.4 78 196-274 334-422 (500)
87 PRK00654 glgA glycogen synthas 83.2 19 0.0004 35.0 11.9 80 195-274 296-386 (466)
88 COG1519 KdtA 3-deoxy-D-manno-o 82.4 47 0.001 31.7 18.3 245 2-281 70-353 (419)
89 PF13477 Glyco_trans_4_2: Glyc 81.4 14 0.0003 28.8 8.6 77 3-82 19-98 (139)
90 cd03791 GT1_Glycogen_synthase_ 80.8 21 0.00046 34.4 11.3 80 195-274 310-400 (476)
91 cd03818 GT1_ExpC_like This fam 80.7 20 0.00043 33.7 10.9 34 241-274 292-330 (396)
92 COG4261 Predicted acyltransfer 79.9 1.3 2.9E-05 38.7 2.3 26 258-283 223-248 (309)
93 cd04949 GT1_gtfA_like This fam 79.4 7.9 0.00017 35.8 7.6 79 196-274 219-308 (372)
94 cd03809 GT1_mtfB_like This fam 78.3 13 0.00029 33.6 8.7 79 195-273 209-301 (365)
95 PHA03392 egt ecdysteroid UDP-g 78.1 17 0.00038 35.8 9.8 129 168-319 296-430 (507)
96 cd03816 GT1_ALG1_like This fam 77.3 17 0.00036 34.7 9.3 114 195-321 246-381 (415)
97 PLN02275 transferase, transfer 76.8 14 0.0003 34.7 8.4 65 211-275 263-340 (371)
98 cd01980 Chlide_reductase_Y Chl 76.8 63 0.0014 31.0 13.0 73 202-277 295-377 (416)
99 cd03802 GT1_AviGT4_like This f 76.1 12 0.00027 33.6 7.8 82 200-281 187-281 (335)
100 TIGR00550 nadA quinolinate syn 75.6 18 0.00038 33.3 8.4 119 197-317 62-192 (310)
101 PRK14098 glycogen synthase; Pr 74.7 50 0.0011 32.4 11.9 80 195-274 321-411 (489)
102 cd03813 GT1_like_3 This family 74.4 15 0.00032 35.8 8.2 78 195-273 307-399 (475)
103 PF04007 DUF354: Protein of un 74.4 16 0.00034 34.0 7.8 81 196-278 13-113 (335)
104 COG3914 Spy Predicted O-linked 73.2 1E+02 0.0023 30.7 15.1 201 49-282 324-545 (620)
105 cd03805 GT1_ALG2_like This fam 73.1 31 0.00068 32.0 9.9 81 195-275 225-330 (392)
106 cd01968 Nitrogenase_NifE_I Nit 72.7 45 0.00098 31.8 10.9 77 201-278 301-384 (410)
107 cd01974 Nitrogenase_MoFe_beta 72.6 83 0.0018 30.3 12.7 80 198-278 314-405 (435)
108 PTZ00372 endonuclease 4-like p 72.1 58 0.0013 31.2 11.2 127 116-265 175-316 (413)
109 TIGR02931 anfK_nitrog Fe-only 69.3 1.2E+02 0.0025 29.6 13.1 79 198-277 323-415 (461)
110 PLN02210 UDP-glucosyl transfer 67.4 35 0.00075 33.2 8.9 137 167-319 268-413 (456)
111 COG1819 Glycosyl transferases, 67.2 33 0.00071 32.8 8.6 79 196-279 251-331 (406)
112 PRK09922 UDP-D-galactose:(gluc 65.7 34 0.00073 31.7 8.3 64 211-274 212-287 (359)
113 PRK14099 glycogen synthase; Pr 64.7 65 0.0014 31.5 10.3 79 195-273 309-398 (485)
114 cd03466 Nitrogenase_NifN_2 Nit 63.7 1.4E+02 0.0031 28.6 13.8 80 198-278 311-400 (429)
115 cd01976 Nitrogenase_MoFe_alpha 62.9 75 0.0016 30.5 10.2 69 207-277 320-396 (421)
116 PF04464 Glyphos_transf: CDP-G 62.1 25 0.00054 32.8 6.7 114 159-278 182-297 (369)
117 cd04950 GT1_like_1 Glycosyltra 61.8 50 0.0011 30.8 8.7 77 196-274 220-308 (373)
118 PLN02939 transferase, transfer 61.0 1.4E+02 0.003 32.0 12.1 79 196-274 794-886 (977)
119 PLN02316 synthase/transferase 60.7 1.9E+02 0.004 31.4 13.2 80 195-274 854-949 (1036)
120 PRK09932 glycerate kinase II; 59.9 57 0.0012 30.9 8.4 40 242-281 277-329 (381)
121 PLN02501 digalactosyldiacylgly 58.9 45 0.00098 34.4 8.0 83 197-279 562-653 (794)
122 cd04946 GT1_AmsK_like This fam 58.6 58 0.0013 30.9 8.6 78 196-273 245-339 (407)
123 COG1576 Uncharacterized conser 58.4 1E+02 0.0022 25.2 9.8 30 191-220 77-108 (155)
124 PLN02448 UDP-glycosyltransfera 58.4 59 0.0013 31.6 8.7 136 167-320 273-414 (459)
125 TIGR03087 stp1 sugar transfera 57.2 58 0.0013 30.6 8.4 62 211-274 261-328 (397)
126 PRK14476 nitrogenase molybdenu 57.0 1.9E+02 0.0042 28.0 12.1 74 201-278 325-399 (455)
127 PRK09375 quinolinate synthetas 55.3 59 0.0013 30.0 7.6 117 195-318 164-293 (319)
128 PLN02863 UDP-glucoronosyl/UDP- 54.7 58 0.0013 31.9 8.0 94 167-274 282-387 (477)
129 PRK10342 glycerate kinase I; P 53.5 86 0.0019 29.7 8.5 41 241-281 276-329 (381)
130 PF08660 Alg14: Oligosaccharid 52.6 22 0.00048 29.5 4.1 33 49-81 81-114 (170)
131 PLN02846 digalactosyldiacylgly 52.0 91 0.002 30.4 8.7 68 211-278 261-334 (462)
132 PF04263 TPK_catalytic: Thiami 51.1 25 0.00054 27.5 3.9 39 242-280 8-46 (123)
133 TIGR00045 glycerate kinase. Th 50.9 24 0.00053 33.3 4.5 41 241-281 275-328 (375)
134 cd01965 Nitrogenase_MoFe_beta_ 49.6 2.4E+02 0.0053 27.0 12.6 36 238-274 358-395 (428)
135 PLN02562 UDP-glycosyltransfera 49.5 89 0.0019 30.3 8.3 132 168-319 273-411 (448)
136 TIGR01282 nifD nitrogenase mol 49.1 99 0.0021 30.2 8.6 67 206-274 354-428 (466)
137 TIGR01283 nifE nitrogenase mol 48.8 1.7E+02 0.0037 28.3 10.2 72 202-276 341-421 (456)
138 COG2984 ABC-type uncharacteriz 47.9 56 0.0012 30.0 6.1 80 194-273 143-244 (322)
139 PF05014 Nuc_deoxyrib_tr: Nucl 47.4 37 0.00081 25.7 4.4 38 243-280 55-101 (113)
140 PRK14478 nitrogenase molybdenu 46.5 76 0.0017 31.0 7.4 38 240-278 382-421 (475)
141 PRK15447 putative protease; Pr 45.6 85 0.0019 28.6 7.1 84 194-277 12-116 (301)
142 cd01977 Nitrogenase_VFe_alpha 44.5 2.9E+02 0.0063 26.4 11.4 36 242-278 349-386 (415)
143 COG4671 Predicted glycosyl tra 42.7 65 0.0014 30.2 5.7 72 2-74 33-121 (400)
144 PF04016 DUF364: Domain of unk 42.4 53 0.0011 26.5 4.7 42 241-282 54-101 (147)
145 PLN02173 UDP-glucosyl transfer 42.3 1.1E+02 0.0024 29.7 7.7 136 167-319 263-406 (449)
146 PF13844 Glyco_transf_41: Glyc 42.0 1.3E+02 0.0029 29.4 8.0 90 194-284 297-400 (468)
147 PLN02167 UDP-glycosyltransfera 42.0 1.6E+02 0.0035 28.7 8.9 93 168-274 280-384 (475)
148 TIGR01286 nifK nitrogenase mol 41.9 3.6E+02 0.0078 26.7 13.2 79 198-277 374-464 (515)
149 TIGR01862 N2-ase-Ialpha nitrog 41.0 3.4E+02 0.0074 26.2 11.5 74 202-276 332-413 (443)
150 cd07062 Peptidase_S66_mccF_lik 40.8 2E+02 0.0043 26.3 8.8 86 194-279 15-125 (308)
151 COG1036 Archaeal flavoproteins 40.6 18 0.00038 29.8 1.6 26 1-26 29-54 (187)
152 PRK14477 bifunctional nitrogen 39.5 3.1E+02 0.0067 29.4 11.0 76 202-278 335-417 (917)
153 PRK02308 uvsE putative UV dama 39.3 99 0.0021 28.3 6.5 73 160-258 139-212 (303)
154 PLN03007 UDP-glucosyltransfera 39.1 1.6E+02 0.0035 28.8 8.4 139 167-320 284-439 (482)
155 COG3613 Nucleoside 2-deoxyribo 39.0 38 0.00082 28.1 3.3 36 243-278 62-108 (172)
156 COG1922 WecG Teichoic acid bio 38.9 22 0.00048 31.6 2.1 44 192-235 90-136 (253)
157 PF05830 NodZ: Nodulation prot 38.9 1.8E+02 0.0039 26.7 7.8 127 150-282 150-308 (321)
158 PF02595 Gly_kinase: Glycerate 38.6 13 0.00028 35.1 0.7 40 242-281 277-329 (377)
159 TIGR02015 BchY chlorophyllide 38.6 1.2E+02 0.0026 29.1 7.3 36 242-278 347-383 (422)
160 COG1412 Uncharacterized protei 38.0 50 0.0011 26.4 3.8 32 247-278 96-127 (136)
161 TIGR01162 purE phosphoribosyla 37.6 93 0.002 25.5 5.4 68 212-279 2-87 (156)
162 TIGR02174 CXXU_selWTH selT/sel 37.3 52 0.0011 22.9 3.5 38 2-41 20-57 (72)
163 PLN02949 transferase, transfer 37.1 1.6E+02 0.0035 28.6 8.0 65 211-275 305-385 (463)
164 TIGR00550 nadA quinolinate syn 36.7 1.3E+02 0.0027 27.8 6.7 69 244-318 206-283 (310)
165 TIGR00161 conserved hypothetic 36.6 1.9E+02 0.0041 25.4 7.7 79 195-281 88-179 (238)
166 COG0826 Collagenase and relate 35.9 1.5E+02 0.0032 27.8 7.1 68 192-273 44-118 (347)
167 TIGR01285 nifN nitrogenase mol 35.3 4.2E+02 0.009 25.5 12.0 74 200-277 324-400 (432)
168 PRK02910 light-independent pro 34.1 3.4E+02 0.0074 26.8 9.9 39 239-278 350-390 (519)
169 PF09001 DUF1890: Domain of un 33.9 74 0.0016 25.4 4.1 78 198-278 15-105 (139)
170 cd07025 Peptidase_S66 LD-Carbo 33.4 1.8E+02 0.004 26.1 7.3 82 197-278 14-120 (282)
171 PRK10125 putative glycosyl tra 33.3 1.3E+02 0.0028 28.7 6.5 43 239-281 296-343 (405)
172 PF03808 Glyco_tran_WecB: Glyc 33.2 2.7E+02 0.0059 22.9 7.8 79 194-272 32-130 (172)
173 PF00731 AIRC: AIR carboxylase 33.1 50 0.0011 26.9 3.1 64 212-275 4-85 (150)
174 TIGR02932 vnfK_nitrog V-contai 33.0 2.5E+02 0.0054 27.3 8.5 78 197-275 319-409 (457)
175 PF13638 PIN_4: PIN domain; PD 32.5 41 0.00089 26.1 2.6 33 242-274 95-132 (133)
176 PLN02534 UDP-glycosyltransfera 31.6 2.8E+02 0.0061 27.3 8.7 96 167-276 282-390 (491)
177 cd07984 LPLAT_LABLAT-like Lyso 31.5 1.8E+02 0.0039 23.9 6.6 24 257-280 119-142 (192)
178 PF05367 Phage_endo_I: Phage e 31.3 39 0.00085 27.1 2.1 21 2-22 79-99 (149)
179 PRK05096 guanosine 5'-monophos 31.1 4.4E+02 0.0096 24.6 9.5 67 145-229 102-170 (346)
180 cd01967 Nitrogenase_MoFe_alpha 30.7 4.6E+02 0.01 24.7 10.7 36 241-277 345-382 (406)
181 PF10250 O-FucT: GDP-fucose pr 30.6 65 0.0014 29.7 4.0 31 146-176 173-203 (351)
182 cd01973 Nitrogenase_VFe_beta_l 30.4 3.5E+02 0.0075 26.3 9.0 80 198-278 316-409 (454)
183 cd03806 GT1_ALG11_like This fa 30.3 2E+02 0.0043 27.4 7.3 34 241-274 316-354 (419)
184 PF01531 Glyco_transf_11: Glyc 30.2 2.4E+02 0.0052 25.5 7.5 79 194-274 188-273 (298)
185 TIGR02472 sucr_P_syn_N sucrose 30.1 4.4E+02 0.0096 25.1 9.8 38 241-278 328-374 (439)
186 TIGR01426 MGT glycosyltransfer 30.1 1.7E+02 0.0036 27.4 6.8 79 198-276 11-121 (392)
187 TIGR00035 asp_race aspartate r 29.3 3E+02 0.0064 23.8 7.7 46 170-228 3-53 (229)
188 PF10087 DUF2325: Uncharacteri 28.9 86 0.0019 23.1 3.7 14 242-255 41-54 (97)
189 COG1929 Glycerate kinase [Carb 28.8 77 0.0017 29.7 3.9 41 241-281 276-329 (378)
190 PF04413 Glycos_transf_N: 3-De 28.6 1.1E+02 0.0023 25.8 4.6 71 2-81 42-115 (186)
191 COG1377 FlhB Flagellar biosynt 28.6 16 0.00035 34.2 -0.5 36 241-279 254-296 (363)
192 COG2099 CobK Precorrin-6x redu 28.6 53 0.0012 29.2 2.7 34 244-277 189-231 (257)
193 PLN02555 limonoid glucosyltran 28.4 2.8E+02 0.006 27.2 8.0 93 168-274 277-381 (480)
194 PF13439 Glyco_transf_4: Glyco 28.0 55 0.0012 25.9 2.7 53 10-64 29-84 (177)
195 PRK13658 hypothetical protein; 27.8 73 0.0016 20.9 2.6 20 303-322 1-20 (59)
196 COG0854 PdxJ Pyridoxal phospha 27.5 1E+02 0.0022 26.9 4.1 78 194-276 71-153 (243)
197 PLN02152 indole-3-acetate beta 27.1 2.9E+02 0.0064 26.9 7.9 135 168-320 261-416 (455)
198 COG1058 CinA Predicted nucleot 26.1 1.5E+02 0.0033 26.4 5.2 31 242-272 53-91 (255)
199 PLN02554 UDP-glycosyltransfera 26.0 2.7E+02 0.0058 27.3 7.5 138 168-319 274-438 (481)
200 PF00389 2-Hacid_dh: D-isomer 25.6 3.1E+02 0.0067 21.1 6.6 41 240-280 29-72 (133)
201 TIGR02919 accessory Sec system 24.6 2.4E+02 0.0051 27.3 6.7 83 194-279 292-382 (438)
202 PF00201 UDPGT: UDP-glucoronos 24.5 3.2E+02 0.007 26.5 7.8 123 168-320 276-408 (500)
203 PF13579 Glyco_trans_4_4: Glyc 24.4 1.8E+02 0.0038 22.3 5.0 84 3-89 13-103 (160)
204 cd05005 SIS_PHI Hexulose-6-pho 24.2 1.6E+02 0.0034 24.3 4.8 85 193-279 17-113 (179)
205 PLN00164 glucosyltransferase; 23.9 6.9E+02 0.015 24.4 10.5 93 168-274 272-383 (480)
206 PRK14719 bifunctional RNAse/5- 23.8 1.4E+02 0.0031 28.0 4.9 84 192-276 3-103 (360)
207 TIGR03849 arch_ComA phosphosul 23.4 4.3E+02 0.0093 23.3 7.4 82 117-215 71-153 (237)
208 PLN03004 UDP-glycosyltransfera 23.4 4E+02 0.0087 25.9 8.0 135 168-320 270-423 (451)
209 cd01080 NAD_bind_m-THF_DH_Cycl 23.4 1.8E+02 0.004 23.9 5.0 62 199-260 31-98 (168)
210 KOG3974 Predicted sugar kinase 23.3 5.5E+02 0.012 23.1 8.0 99 169-280 103-205 (306)
211 cd07995 TPK Thiamine pyrophosp 23.1 85 0.0018 26.8 3.1 35 244-279 16-50 (208)
212 PF00205 TPP_enzyme_M: Thiamin 22.7 1.6E+02 0.0035 22.9 4.4 59 200-258 2-86 (137)
213 PLN02410 UDP-glucoronosyl/UDP- 22.4 6.4E+02 0.014 24.4 9.3 134 167-319 263-408 (451)
214 PLN00414 glycosyltransferase f 22.4 5.4E+02 0.012 24.9 8.7 136 167-319 251-400 (446)
215 PLN02764 glycosyltransferase f 22.4 4.1E+02 0.009 25.8 7.9 139 167-320 256-406 (453)
216 cd00316 Oxidoreductase_nitroge 22.3 6.4E+02 0.014 23.5 12.3 39 238-277 335-375 (399)
217 KOG2804 Phosphorylcholine tran 22.2 28 0.00061 31.6 -0.1 55 2-65 84-154 (348)
218 PF09837 DUF2064: Uncharacteri 22.1 1.2E+02 0.0027 23.5 3.5 47 197-256 47-94 (122)
219 PHA00159 endonuclease I 22.1 76 0.0016 25.3 2.2 24 3-26 80-103 (148)
220 COG0159 TrpA Tryptophan syntha 21.6 5.9E+02 0.013 22.8 11.4 20 237-256 214-233 (265)
221 PRK00103 rRNA large subunit me 21.6 2.5E+02 0.0055 22.9 5.4 29 191-219 77-108 (157)
222 PF01312 Bac_export_2: FlhB Hr 21.5 23 0.00051 33.0 -0.8 24 242-268 250-273 (343)
223 PLN02207 UDP-glycosyltransfera 21.4 6.1E+02 0.013 24.8 8.9 94 167-274 274-376 (468)
224 PF00113 Enolase_C: Enolase, C 21.4 4.6E+02 0.0099 23.9 7.5 87 194-282 161-267 (295)
225 TIGR03472 HpnI hopanoid biosyn 21.0 4.9E+02 0.011 24.3 8.0 65 4-70 64-136 (373)
226 TIGR00162 conserved hypothetic 20.9 2.9E+02 0.0062 23.3 5.8 29 253-281 95-123 (188)
227 PRK06298 type III secretion sy 20.1 21 0.00044 33.6 -1.5 34 242-278 249-289 (356)
228 TIGR00246 tRNA_RlmH_YbeA rRNA 20.1 4.8E+02 0.01 21.2 8.1 29 191-219 75-105 (153)
229 PRK03359 putative electron tra 20.1 6.2E+02 0.014 22.5 8.7 83 3-85 47-142 (256)
No 1
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=100.00 E-value=2e-53 Score=397.30 Aligned_cols=297 Identities=15% Similarity=0.116 Sum_probs=232.0
Q ss_pred ChhHhhhCCCCEEEEEeccCchhhhhhCCCCceEEEecCCCC--CCCchhHHHHHHHHHhcCCcEEEEecCCchHHHHHH
Q 020516 1 MYLHITRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDD--WPEPAEYTDILGVMKNRYYDMVLSTKLAGLGHAAFL 78 (325)
Q Consensus 1 ~~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~Vd~v~~~~~~~~--~~~~~~~~~l~~~Lr~~~yDl~i~~~~~~~~~~~~~ 78 (325)
+++||++||+++|||++.+.++++++++|+||+|+.++++.. +..+..+++++++||+++||++||++.+ +++++++
T Consensus 26 l~~Lk~~~P~a~I~~l~~~~~~~l~~~~P~id~vi~~~~~~~~~~~~~~~~~~l~~~lr~~~yD~vidl~~~-~~s~ll~ 104 (352)
T PRK10422 26 ISSLKKNYPDAKIDVLLYQDTIPILSENPEINALYGIKNKKAGASEKIKNFFSLIKVLRANKYDLIVNLTDQ-WMVALLV 104 (352)
T ss_pred HHHHHHHCCCCeEEEEeccChHHHhccCCCceEEEEeccccccHHHHHHHHHHHHHHHhhCCCCEEEEcccc-hHHHHHH
Confidence 478999999999999999999999999999999999997642 1123456788899999999999999988 8999999
Q ss_pred HHhCCCceeecccCCcccCCcccccceeccCCCcchhhhHHHHHHHHHHHcCCCCCCCCCCCCCCCeeecCHHHHHHHHH
Q 020516 79 FMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRSVPRHPVPPLRVSISRRLKEVVAE 158 (325)
Q Consensus 79 ~~~~a~~rig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (325)
+++|++.||||............++++.++.. . .|.+++|+.+++.+|++ ...+.+.+.+++++.+..+.
T Consensus 105 ~l~~a~~rig~~~~~~~~~~~~~~~~~~~~~~-~---~h~~~~~~~ll~~lg~~------~~~~~~~l~~~~~~~~~~~~ 174 (352)
T PRK10422 105 RLLNARVKISQDYHHRQSAFWRKSFTHLVPLQ-G---GHIVESNLSVLTPLGLS------SLVKETTMSYRPESWKRMRR 174 (352)
T ss_pred HHhCCCeEEeeccccccchhHHHHhcccCCCC-C---cchHHhhHhHHhhcCCC------CCCCcceeecCHHHHHHHHH
Confidence 99999999999732211111223566665422 2 58899999999999982 22234566677776666555
Q ss_pred HHHHcCCCCCCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCC-CEEEecCCCch--HHHHhHHccCC---
Q 020516 159 KYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFVIPHEKER--EGVEDVVGDDA--- 232 (325)
Q Consensus 159 ~~~~~~~~~~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~-~vvl~g~~~e~--~~~~~i~~~~~--- 232 (325)
.+...+. .+++|+||||+++. .|+||.|+|++|++.|.+++ .++|+|||+|+ +.++++.+...
T Consensus 175 ~~~~~~~-~~~~i~i~pga~~~----------~K~Wp~e~fa~l~~~L~~~~~~vvl~ggp~e~e~~~~~~i~~~~~~~~ 243 (352)
T PRK10422 175 QLDHLGV-TQNYVVIQPTARQI----------FKCWDNDKFSAVIDALQARGYEVVLTSGPDKDDLACVNEIAQGCQTPP 243 (352)
T ss_pred HHHhcCC-CCCeEEEecCCCcc----------ccCCCHHHHHHHHHHHHHCCCeEEEEcCCChHHHHHHHHHHHhcCCCc
Confidence 5554444 46899999999874 48899999999999998766 89999998654 44577765422
Q ss_pred --CcccccChHHHHHHHHhCCEEEecCchHHHHHHhcCCCEEEEecCCCCCccccCCCCCCceeeeeC------------
Q 020516 233 --SIVFITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIALFSSELKGRLFVPNAEEKKCTVISS------------ 298 (325)
Q Consensus 233 --~~~~~~~~~el~ali~~a~l~I~~DTGp~HlAaAl~~P~iaLfg~t~p~~~~pp~~~~~~~~~~~~------------ 298 (325)
++.+.+++.|++++|++|+++|||||||||||+|+|+|||+|||||+|.+|+| + ++ ++.++..
T Consensus 244 ~~~l~g~~sL~el~ali~~a~l~v~nDSGp~HlAaA~g~P~v~lfGpt~p~~~~P-~-~~-~~~v~~~~~~~~~pc~~~~ 320 (352)
T PRK10422 244 VTALAGKTTFPELGALIDHAQLFIGVDSAPAHIAAAVNTPLICLFGATDHIFWRP-W-SD-NMIQFWAGDYQEMPTRDEL 320 (352)
T ss_pred cccccCCCCHHHHHHHHHhCCEEEecCCHHHHHHHHcCCCEEEEECCCCccccCC-C-CC-CeeEEECCCcccCcCcccC
Confidence 23334567999999999999999999999999999999999999999999999 7 33 3333211
Q ss_pred --CCCCCCCCCHHHHHHHHHHHHHhh
Q 020516 299 --RTGKLIDTPVEAVLNAMQIFNESL 322 (325)
Q Consensus 299 --~~~~m~~I~~~~V~~~~~~~~~~~ 322 (325)
...||.+|+||+|++++.++...+
T Consensus 321 ~~~~~Cm~~I~~~~V~~~~~~ll~~~ 346 (352)
T PRK10422 321 DRNEKYLSVIPAADVIAAVDKLLPSS 346 (352)
T ss_pred CccccHhhcCCHHHHHHHHHHHHhcc
Confidence 125899999999999999987654
No 2
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=100.00 E-value=1.8e-53 Score=396.49 Aligned_cols=297 Identities=18% Similarity=0.142 Sum_probs=233.4
Q ss_pred ChhHhhhCCCCEEEEEeccCchhhhhhCCCCceEEEecCCCC---CCCchhHHHHHHHHHhcCCcEEEEecCCchHHHHH
Q 020516 1 MYLHITRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDD---WPEPAEYTDILGVMKNRYYDMVLSTKLAGLGHAAF 77 (325)
Q Consensus 1 ~~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~Vd~v~~~~~~~~---~~~~~~~~~l~~~Lr~~~yDl~i~~~~~~~~~~~~ 77 (325)
+++||++||+++|||+|.+.++++++++|+||+|++++.+.. +.++..+++++++||+++||++|+++.+ ++++++
T Consensus 20 l~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~vd~vi~~~~~~~~~~~~~~~~~~~l~~~lr~~~yD~vidl~~~-~~s~ll 98 (344)
T TIGR02201 20 ISSLKKNYPDAKIDVLLYQETIPILSENPDINALYGLDRKKAKAGERKLANQFHLIKVLRANRYDLVVNLTDQ-WMVAIL 98 (344)
T ss_pred HHHHHHHCCCCEEEEEECcChHHHHhcCCCccEEEEeChhhhcchHHHHHHHHHHHHHHHhCCCCEEEECCcc-hHHHHH
Confidence 378999999999999999999999999999999999986532 1123456778899999999999999988 899999
Q ss_pred HHHhCCCceeecccCCcccCCcccccceeccCCCcchhhhHHHHHHHHHHHcCCCCCCCCCCCCCCCeeecCHHHHHHHH
Q 020516 78 LFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRSVPRHPVPPLRVSISRRLKEVVA 157 (325)
Q Consensus 78 ~~~~~a~~rig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (325)
++++|++.|+||..+.........++++.++.+..+ ..|.+++|+.+++.+|++ ...+.+.+.+++++.+.++
T Consensus 99 ~~l~~a~~riG~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~l~ll~~lg~~------~~~~~~~l~~~~~~~~~~~ 171 (344)
T TIGR02201 99 VKLLNARVKIGFDYPKRRSAFWRKSFTALAPLQGGN-TLHTVEQNLSVLTPLGLD------SLVKQTRMSYPPADWKAMR 171 (344)
T ss_pred HHhcCCCeEEeecCCCcchhHHHHHhccccCCCCCC-ccchHhhhhhHHhhcCCC------CCCCceeeecCHHHHHHHH
Confidence 999999999999743321111223556655433221 258899999999999983 2223456788888877766
Q ss_pred HHHHHcCCCCCCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCC-CEEEecCCC--chHHHHhHHccCCC-
Q 020516 158 EKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFVIPHEK--EREGVEDVVGDDAS- 233 (325)
Q Consensus 158 ~~~~~~~~~~~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~-~vvl~g~~~--e~~~~~~i~~~~~~- 233 (325)
..+...+. .+++|++|||+++. .|+||.|+|++|++.|.+++ .++|+|||+ |++.++++.+.+++
T Consensus 172 ~~l~~~~~-~~~~i~i~p~a~~~----------~K~Wp~e~~~~l~~~l~~~~~~ivl~g~p~~~e~~~~~~i~~~~~~~ 240 (344)
T TIGR02201 172 ALLDEAGV-GQNYIVIQPTSRWF----------FKCWDNDRFSALIDALHARGYEVVLTSGPDKDELAMVNEIAQGCQTP 240 (344)
T ss_pred HHHHhcCC-CCCEEEEeCCCCcc----------ccCCCHHHHHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHhhCCCC
Confidence 66655544 46899999999874 48899999999999998766 899999987 55567777654432
Q ss_pred ----cccccChHHHHHHHHhCCEEEecCchHHHHHHhcCCCEEEEecCCCCCccccCCCCCCceeeeeC-----------
Q 020516 234 ----IVFITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIALFSSELKGRLFVPNAEEKKCTVISS----------- 298 (325)
Q Consensus 234 ----~~~~~~~~el~ali~~a~l~I~~DTGp~HlAaAl~~P~iaLfg~t~p~~~~pp~~~~~~~~~~~~----------- 298 (325)
+.+.++++|++++|++|+++|||||||||||+|+|+|+|+|||||+|.+|+| + +. ++.++..
T Consensus 241 ~~~~l~g~~sL~el~ali~~a~l~Vs~DSGp~HlAaA~g~p~v~Lfgpt~p~~~~P-~-~~-~~~~l~~~~~~~~pc~~~ 317 (344)
T TIGR02201 241 RVTSLAGKLTLPQLAALIDHARLFIGVDSVPMHMAAALGTPLVALFGPSKHIFWRP-W-SN-NMIQFWAGDYGELPDPDQ 317 (344)
T ss_pred cccccCCCCCHHHHHHHHHhCCEEEecCCHHHHHHHHcCCCEEEEECCCCcccccc-C-CC-CeeEEeCCCcccCCChhh
Confidence 2334467999999999999999999999999999999999999999999999 7 33 2333221
Q ss_pred -----CCCCCCCCCHHHHHHHHHHHH
Q 020516 299 -----RTGKLIDTPVEAVLNAMQIFN 319 (325)
Q Consensus 299 -----~~~~m~~I~~~~V~~~~~~~~ 319 (325)
+..||.+|+||+|+++++++.
T Consensus 318 ~~~~~~~~cm~~i~~~~V~~~~~~~l 343 (344)
T TIGR02201 318 RDTNTRERYLSVIPAAAVIAAVDKLL 343 (344)
T ss_pred cCCCchhhHHhcCCHHHHHHHHHHhc
Confidence 124899999999999999875
No 3
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=100.00 E-value=5.2e-53 Score=393.97 Aligned_cols=298 Identities=17% Similarity=0.134 Sum_probs=227.0
Q ss_pred ChhHhhhCCCCEEEEEeccCchhhhhhCCCCceEEEecCCCCCCCchhHHHHHHHHHhcCCcEEEEecCCchHHHHHHHH
Q 020516 1 MYLHITRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNRYYDMVLSTKLAGLGHAAFLFM 80 (325)
Q Consensus 1 ~~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~Vd~v~~~~~~~~~~~~~~~~~l~~~Lr~~~yDl~i~~~~~~~~~~~~~~~ 80 (325)
+++||++||+++|||+|.+.++++++++|+||+|+++++++....+..+++++++||+++||++||++.+ .++++++++
T Consensus 21 l~~Lk~~~P~a~I~~l~~~~~~~l~~~~P~vd~vi~~~~~~~~~~~~~~~~l~~~lr~~~yD~vidl~~~-~~s~~l~~~ 99 (348)
T PRK10916 21 YRTLKARYPQAIIDVMAPAWCRPLLSRMPEVNEAIPMPLGHGALEIGERRRLGHSLREKRYDRAYVLPNS-FKSALVPFF 99 (348)
T ss_pred HHHHHHHCCCCeEEEEechhhHHHHhcCCccCEEEecccccchhhhHHHHHHHHHHHhcCCCEEEECCCc-HHHHHHHHH
Confidence 4789999999999999999999999999999999999876432344566789999999999999999998 999999999
Q ss_pred hCCCceeecccCCcccCCcccccceeccCCCcchhhhHHHHHHHHHHHcCCCCC--CCCCCCCCCCeeecCHHHHHHHHH
Q 020516 81 TTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFR--SVPRHPVPPLRVSISRRLKEVVAE 158 (325)
Q Consensus 81 ~~a~~rig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~lg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 158 (325)
+|++.|+||. +.....++++....+... ..|.+++|+.++..+|.... .++ .....+.+.+++++.+..
T Consensus 100 ~~~~~rig~~-----~~~~~~~~~~~~~~~~~~-~~h~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-- 170 (348)
T PRK10916 100 AGIPHRTGWR-----GEMRYGLLNDLRVLDKEA-FPLMVERYVALAYDKGVMRTAADLP-QPLLWPQLQVSEGEKSET-- 170 (348)
T ss_pred cCCCeEeecc-----cCccccccccccccCccc-CcHHHHHHHHHhcccccccccccCC-CCcCCCccccCHHHHHHH--
Confidence 9999999997 222223444332212211 25889999999876653111 110 111234556666554432
Q ss_pred HHHHcCCC-CCCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCC-CEEEecCCCchHHHHhHHccCC----
Q 020516 159 KYKNAGAE-QGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFVIPHEKEREGVEDVVGDDA---- 232 (325)
Q Consensus 159 ~~~~~~~~-~~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~-~vvl~g~~~e~~~~~~i~~~~~---- 232 (325)
....++. .+++|+||||+++.+ .|+||.|+|++|++.|.+.+ .+||+|||+|++.++++.+..+
T Consensus 171 -~~~~~~~~~~~~i~i~pga~~~~---------~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i~~~~~~~~~ 240 (348)
T PRK10916 171 -CAAFSLSSERPIIGFCPGAEFGP---------AKRWPHYHYAELAQQLIDEGYQVVLFGSAKDHEAGNEILAALNTEQQ 240 (348)
T ss_pred -HHHcCCCCCCCEEEEeCCCCCcc---------ccCCCHHHHHHHHHHHHHCCCeEEEEeCHHhHHHHHHHHHhcccccc
Confidence 2233333 568999999998632 58999999999999998666 8999999999999988876542
Q ss_pred ----CcccccChHHHHHHHHhCCEEEecCchHHHHHHhcCCCEEEEecCCCCCccccCCCCCCceeeeeC----------
Q 020516 233 ----SIVFITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIALFSSELKGRLFVPNAEEKKCTVISS---------- 298 (325)
Q Consensus 233 ----~~~~~~~~~el~ali~~a~l~I~~DTGp~HlAaAl~~P~iaLfg~t~p~~~~pp~~~~~~~~~~~~---------- 298 (325)
++.+.+++.|++++|++|+++|||||||||||+|+|+|||+|||||+|.+|+| + +. ++.++..
T Consensus 241 ~~~~~l~g~~sL~el~ali~~a~l~I~nDTGp~HlAaA~g~P~valfGpt~p~~~~P-~-~~-~~~vi~~~~~~~~~~~~ 317 (348)
T PRK10916 241 AWCRNLAGETQLEQAVILIAACKAIVTNDSGLMHVAAALNRPLVALYGPSSPDFTPP-L-SH-KARVIRLITGYHKVRKG 317 (348)
T ss_pred cceeeccCCCCHHHHHHHHHhCCEEEecCChHHHHHHHhCCCEEEEECCCCccccCC-C-CC-CeEEEEccCCcccccCC
Confidence 22233467999999999999999999999999999999999999999999887 7 33 3333221
Q ss_pred -----CCCCCCCCCHHHHHHHHHHHHHh
Q 020516 299 -----RTGKLIDTPVEAVLNAMQIFNES 321 (325)
Q Consensus 299 -----~~~~m~~I~~~~V~~~~~~~~~~ 321 (325)
...||.+|+||+|++++.++...
T Consensus 318 ~c~~~~~~cm~~I~~~~V~~~~~~ll~~ 345 (348)
T PRK10916 318 DAAEGYHQSLIDITPQRVLEELNALLLQ 345 (348)
T ss_pred CCCCchhhhhhhCCHHHHHHHHHHHhhc
Confidence 12499999999999999987643
No 4
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=100.00 E-value=8.2e-53 Score=390.60 Aligned_cols=293 Identities=19% Similarity=0.192 Sum_probs=228.9
Q ss_pred ChhHhhhCCCCEEEEEeccCchhhhhhCCCCceEEEecCCCCCCCchhHHHHHHHHHhcCCcEEEEecCCchHHHHHHHH
Q 020516 1 MYLHITRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNRYYDMVLSTKLAGLGHAAFLFM 80 (325)
Q Consensus 1 ~~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~Vd~v~~~~~~~~~~~~~~~~~l~~~Lr~~~yDl~i~~~~~~~~~~~~~~~ 80 (325)
+++||++||+++|||++.+.++++++++|+||+|+.++.+....++..+.+++++||+++||++|+++.+ +++++++++
T Consensus 20 l~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~id~v~~~~~~~~~~~~~~~~~~~~~lr~~~yD~vi~l~~~-~~s~ll~~~ 98 (334)
T TIGR02195 20 YRLLKKRYPQAVIDVLAPAWCRPLLERMPEIRQAIDMPLGHGALELTERRRLGRSLREERYDQAIVLPNS-LKSALIPFF 98 (334)
T ss_pred HHHHHHHCCCCEEEEEechhhHHHHhcCchhceeeecCCcccchhhhHHHHHHHHHhhcCCCEEEECCCC-HHHHHHHHH
Confidence 4789999999999999999999999999999999999876433345566789999999999999999998 999999999
Q ss_pred hCCCceeecccCCcccCCcccccceeccCCCcchhhhHHHHHHHHHHHcCCCCCCCCCCCCCCCeeecCHHHHHHHHHHH
Q 020516 81 TTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRSVPRHPVPPLRVSISRRLKEVVAEKY 160 (325)
Q Consensus 81 ~~a~~rig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (325)
+|++.|+||. +..+..++++....+... ..|.+++|+.++..+|.... ...+.+.+.+++++.+.. .
T Consensus 99 ~~~~~riG~~-----~~~~~~~~~~~~~~~~~~-~~h~~~~~~~l~~~~~~~~~----~~~~~p~l~~~~~~~~~~---~ 165 (334)
T TIGR02195 99 AGIPHRTGWR-----GEMRYGLLNDVRALDKER-LPLMVERYIALAYDKGQDLP----QPLPRPQLQVSPAEQAAA---L 165 (334)
T ss_pred cCCCceeeec-----CCCcceecccCcCCCccc-ccHHHHHHHHHhccccCCCC----CCCCCCcccCCHHHHHHH---H
Confidence 9999999997 322234556554323221 24789999988877765221 112334566666654432 3
Q ss_pred HHcCCC-CCCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCC-CEEEecCCCchHHHHhHHccCCC----c
Q 020516 161 KNAGAE-QGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFVIPHEKEREGVEDVVGDDAS----I 234 (325)
Q Consensus 161 ~~~~~~-~~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~-~vvl~g~~~e~~~~~~i~~~~~~----~ 234 (325)
...++. .+++|+||||+++.+ .|+||.|+|++|++.|.+++ +++|+|+|+|++.++++.+..++ +
T Consensus 166 ~~~~~~~~~~~i~i~pga~~~~---------~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~~~~~~~~l 236 (334)
T TIGR02195 166 AKFGLDTERPIIAFCPGAEFGP---------AKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEALLPGELRNL 236 (334)
T ss_pred HHcCCCCCCCEEEEcCCCCCCc---------cCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHhCCcccccC
Confidence 334554 468999999998532 58899999999999998766 89999999999998888765542 2
Q ss_pred ccccChHHHHHHHHhCCEEEecCchHHHHHHhcCCCEEEEecCCCCCccccCCCCCCceeeee------------CC---
Q 020516 235 VFITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIALFSSELKGRLFVPNAEEKKCTVIS------------SR--- 299 (325)
Q Consensus 235 ~~~~~~~el~ali~~a~l~I~~DTGp~HlAaAl~~P~iaLfg~t~p~~~~pp~~~~~~~~~~~------------~~--- 299 (325)
.+..+..|++++|++||++|||||||||||+|+|+|+|+|||||+|.+|+| + +. ++.++. ++
T Consensus 237 ~g~~sL~el~ali~~a~l~I~~DSGp~HlAaA~~~P~i~lfG~t~p~~~~P-~-~~-~~~vl~~~~~c~pC~~~~c~~~~ 313 (334)
T TIGR02195 237 AGETSLDEAVDLIALAKAVVTNDSGLMHVAAALNRPLVALYGSTSPDFTPP-L-SE-KAEVIRLNLECSPCFKRDCPYGH 313 (334)
T ss_pred CCCCCHHHHHHHHHhCCEEEeeCCHHHHHHHHcCCCEEEEECCCChhhcCC-C-CC-CceEEecCCCccCCCCCCCCCCc
Confidence 334466999999999999999999999999999999999999999999877 7 33 332221 11
Q ss_pred CCCCCCCCHHHHHHHHHHHH
Q 020516 300 TGKLIDTPVEAVLNAMQIFN 319 (325)
Q Consensus 300 ~~~m~~I~~~~V~~~~~~~~ 319 (325)
..||.+|+||+|+++++++.
T Consensus 314 ~~Cm~~I~~~~V~~~~~~ll 333 (334)
T TIGR02195 314 HQCLIDLSPEQVLEALNELL 333 (334)
T ss_pred hhhhccCCHHHHHHHHHHhh
Confidence 24999999999999999864
No 5
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=100.00 E-value=3.3e-51 Score=378.01 Aligned_cols=289 Identities=15% Similarity=0.144 Sum_probs=220.4
Q ss_pred ChhHhhhCCCCEEEEEeccCchhhhhhCCCCceEEEecCCCCCCC------chhHHHHHHHHHhcCCcEEEEecCCchHH
Q 020516 1 MYLHITRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPE------PAEYTDILGVMKNRYYDMVLSTKLAGLGH 74 (325)
Q Consensus 1 ~~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~Vd~v~~~~~~~~~~~------~~~~~~l~~~Lr~~~yDl~i~~~~~~~~~ 74 (325)
+++||++|||++|||+|.+.++++++++|+||+|+.++.+..... ...+.+++++||+++||++|+++.+ .++
T Consensus 21 ~~~lk~~~P~a~I~~l~~~~~~~l~~~~p~vd~vi~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~yD~vidl~~~-~~s 99 (322)
T PRK10964 21 LTDAQQAIPGIQFDWVVEEGFAQIPSWHPAVDRVIPVAIRRWRKAWFSAPIRAERKAFREALQAEQYDAVIDAQGL-VKS 99 (322)
T ss_pred HHHHHHhCCCCEEEEEECHHHHHHHhcCCCccEEEeechhHhhhcccchhHHHHHHHHHHHHhccCCCEEEEccch-HHH
Confidence 478999999999999999999999999999999999985421011 1245688999999999999999987 888
Q ss_pred HHHHHHhCCCceeecccCCcccCCcccccceeccCCCcchhhhHHHHHHHHH-HHcCCCCCCCCCCCCCCCeeecCHHHH
Q 020516 75 AAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMV-DWLGRPFRSVPRHPVPPLRVSISRRLK 153 (325)
Q Consensus 75 ~~~~~~~~a~~rig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll-~~lg~~~~~~~~~~~~~~~~~~~~~~~ 153 (325)
++++++++++.|+||...........+++++.++.... .|.+++|..++ +.+|++.. ... .+.
T Consensus 100 ~~l~~~~~~~~r~G~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~~~~~l~~~~lg~~~~------~~~-------~~~ 163 (322)
T PRK10964 100 AALVTRLAHGVKHGMDWQSAREPLASLFYNRRHHIAKQ---QHAVERTRELFAKSLGYSKP------QTQ-------GDY 163 (322)
T ss_pred HHHHHHhcCCcEecCCCCcccchHhHhhccCccCCCcc---cCHHHHHHHHHHHHcCCCcc------CCc-------cch
Confidence 88877777778999973221111123567766654333 68899999987 68887311 101 111
Q ss_pred HHHHHHHHHcCCCCCCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCC-CEEEe-cCCCchHHHHhHHccC
Q 020516 154 EVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFVI-PHEKEREGVEDVVGDD 231 (325)
Q Consensus 154 ~~~~~~~~~~~~~~~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~-~vvl~-g~~~e~~~~~~i~~~~ 231 (325)
..++.++.......++++++++|+++. .|+||.|+|++|++.|.+++ +++|+ |+++|++.++++.+.+
T Consensus 164 ~~~~~~~~~~~~~~~~~i~~~~~~s~~----------~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~e~~~~~~i~~~~ 233 (322)
T PRK10964 164 AIAQHFLTNLPADAGPYLVFLHATTRD----------DKHWPEAHWRELIGLLAPSGLRIKLPWGAEHEEQRAKRLAEGF 233 (322)
T ss_pred hhhhhhcccccccCCCeEEEEeCCCcc----------cccCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHccC
Confidence 122222222223356799888888763 48899999999999998776 78886 7788999999887765
Q ss_pred CCc--ccccChHHHHHHHHhCCEEEecCchHHHHHHhcCCCEEEEecCCCCCccccCCCCCCceeeeeCCCCCCCCCCHH
Q 020516 232 ASI--VFITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIALFSSELKGRLFVPNAEEKKCTVISSRTGKLIDTPVE 309 (325)
Q Consensus 232 ~~~--~~~~~~~el~ali~~a~l~I~~DTGp~HlAaAl~~P~iaLfg~t~p~~~~pp~~~~~~~~~~~~~~~~m~~I~~~ 309 (325)
+.. .+.++..|++++|++||++|||||||||||+|+|+|||+|||||+|.+|+| + +. +...+.....||.+|+||
T Consensus 234 ~~~~l~g~~sL~elaali~~a~l~I~nDSGp~HlA~A~g~p~valfGpt~p~~~~p-~-~~-~~~~~~~~~~cm~~I~~e 310 (322)
T PRK10964 234 PYVEVLPKLSLEQVARVLAGAKAVVSVDTGLSHLTAALDRPNITLYGPTDPGLIGG-Y-GK-NQHACRSPGKSMADLSAE 310 (322)
T ss_pred CcceecCCCCHHHHHHHHHhCCEEEecCCcHHHHHHHhCCCEEEEECCCCcccccC-C-CC-CceeecCCCcccccCCHH
Confidence 432 234567999999999999999999999999999999999999999999988 7 44 344454456899999999
Q ss_pred HHHHHHHHHH
Q 020516 310 AVLNAMQIFN 319 (325)
Q Consensus 310 ~V~~~~~~~~ 319 (325)
+|++++++++
T Consensus 311 ~V~~~~~~~l 320 (322)
T PRK10964 311 TVFQKLETLI 320 (322)
T ss_pred HHHHHHHHHh
Confidence 9999999875
No 6
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=100.00 E-value=4.1e-50 Score=370.25 Aligned_cols=288 Identities=17% Similarity=0.181 Sum_probs=219.8
Q ss_pred ChhHhhhCCCCEEEEEeccCchhhhhhCCCCceEEEecCCCCCCC------chhHHHHHHHHHhcCCcEEEEecCCchHH
Q 020516 1 MYLHITRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPE------PAEYTDILGVMKNRYYDMVLSTKLAGLGH 74 (325)
Q Consensus 1 ~~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~Vd~v~~~~~~~~~~~------~~~~~~l~~~Lr~~~yDl~i~~~~~~~~~ 74 (325)
+++||++||+++|||++.+.+++++++||+||+|++++.+...++ ...+..+.+.||+++||++|+++.+ .++
T Consensus 20 l~~Lr~~~P~a~I~~l~~~~~~~~~~~~p~vd~v~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~yD~vi~~~~~-~~s 98 (319)
T TIGR02193 20 LTDIKRALPDVEIDWVVEEGFADIVRLHPAVDEVIPVALRRWRKTLFSAATWREIKALRALLRAERYDAVIDAQGL-IKS 98 (319)
T ss_pred HHHHHHhCCCCEEEEEEChhHhhhhhcCCCccEEEEechhhhhhccccchhHHHHHHHHHHHhhccchhhhhhhhh-HHH
Confidence 478999999999999999999999999999999999986531111 1234456678999999999999988 899
Q ss_pred HHHHHHhCCCceeecccCCcccCCcccccceeccCCCcchhhhHHHHHHHHH-HHcCCCCCCCCCCCCCCCeeecCHHHH
Q 020516 75 AAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMV-DWLGRPFRSVPRHPVPPLRVSISRRLK 153 (325)
Q Consensus 75 ~~~~~~~~a~~rig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll-~~lg~~~~~~~~~~~~~~~~~~~~~~~ 153 (325)
++++++++ +.|+||...........+++++.+..+.. .|.+++|..++ +.+|++.. ....+.+.++.++.
T Consensus 99 ~~l~~~~~-~~r~g~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~~~~~ll~~~lg~~~~-----~~~~~~~~~~~~~~ 169 (319)
T TIGR02193 99 ALVARMAR-GPRHGFDWRSAREPLASLFYNKRVGISYQ---QHAVERNRKLFALALGYPPP-----IAETIDYGLARRAA 169 (319)
T ss_pred HHHHHhhC-CceecCCCCccccHHHHHHhcCccCCCcc---cCHHHHHHHHHHHHcCCCCC-----CCCccccCccchhh
Confidence 99999998 45899974322111123566666554433 58899999987 57888320 11223444554433
Q ss_pred HHHHHHHHHcCCCCCCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCC-CEEEe-cCCCchHHHHhHHccC
Q 020516 154 EVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFVI-PHEKEREGVEDVVGDD 231 (325)
Q Consensus 154 ~~~~~~~~~~~~~~~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~-~vvl~-g~~~e~~~~~~i~~~~ 231 (325)
.+.+. . ..++++|+++||+++. .|+||.|+|++|++.|.+++ .+||+ |+++|++.++++.+..
T Consensus 170 ---~~~~~-~-~~~~~~i~i~~gas~~----------~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e~~~~~~i~~~~ 234 (319)
T TIGR02193 170 ---VAFLG-H-ALPAPYAVLLHATSRD----------DKTWPEERWRELARLLLARGLQIVLPWGNDAEKQRAERIAEAL 234 (319)
T ss_pred ---hhhhh-c-cCCCCEEEEEeCCCcc----------cCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHhhC
Confidence 11211 1 1257899999999874 48899999999999998766 77777 6678888888887765
Q ss_pred CC--cccccChHHHHHHHHhCCEEEecCchHHHHHHhcCCCEEEEecCCCCCccccCCCCCCceeeeeCCCCCCCCCCHH
Q 020516 232 AS--IVFITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIALFSSELKGRLFVPNAEEKKCTVISSRTGKLIDTPVE 309 (325)
Q Consensus 232 ~~--~~~~~~~~el~ali~~a~l~I~~DTGp~HlAaAl~~P~iaLfg~t~p~~~~pp~~~~~~~~~~~~~~~~m~~I~~~ 309 (325)
++ +.+.++..|++++|++|+++|||||||||||+|+|+|+|+|||||+|.+|+| + +. ++.++. ..||++|+|+
T Consensus 235 ~~~~l~g~~sL~el~ali~~a~l~I~~DSgp~HlAaa~g~P~i~lfg~t~p~~~~P-~-~~-~~~~~~--~~~~~~I~~~ 309 (319)
T TIGR02193 235 PGAVVLPKMSLAEVAALLAGADAVVGVDTGLTHLAAALDKPTVTLYGATDPGRTGG-Y-GK-PNVALL--GESGANPTPD 309 (319)
T ss_pred CCCeecCCCCHHHHHHHHHcCCEEEeCCChHHHHHHHcCCCEEEEECCCCHhhccc-C-CC-CceEEc--cCccCCCCHH
Confidence 53 3334567999999999999999999999999999999999999999999999 7 44 444554 3489999999
Q ss_pred HHHHHHHHH
Q 020516 310 AVLNAMQIF 318 (325)
Q Consensus 310 ~V~~~~~~~ 318 (325)
+|++++.++
T Consensus 310 ~V~~ai~~~ 318 (319)
T TIGR02193 310 EVLAALEEL 318 (319)
T ss_pred HHHHHHHhh
Confidence 999999876
No 7
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=3.8e-47 Score=351.91 Aligned_cols=292 Identities=20% Similarity=0.208 Sum_probs=224.4
Q ss_pred ChhHhhhCCCCEEEEEeccCchhhhhhCCCCceEEEecCCCCCCCchhHHHHHHHHHhcCCcEEEEecCCchHHHHHHHH
Q 020516 1 MYLHITRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNRYYDMVLSTKLAGLGHAAFLFM 80 (325)
Q Consensus 1 ~~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~Vd~v~~~~~~~~~~~~~~~~~l~~~Lr~~~yDl~i~~~~~~~~~~~~~~~ 80 (325)
++.||++|||++|||++.+.++++++.+|+|++|+.++.++.-.++..+.++++.||+++||++|+++.+ +++++++++
T Consensus 22 ~~~lk~~~P~a~i~~~~~~~~~~i~~~~p~I~~vi~~~~~~~~~~~~~~~~l~~~lr~~~yD~vidl~~~-~ksa~l~~~ 100 (334)
T COG0859 22 LRTLKKAYPNAKIDVLVPKGFAPILKLNPEIDKVIIIDKKKKGLGLKERLALLRTLRKERYDAVIDLQGL-LKSALLALL 100 (334)
T ss_pred HHHHHHHCCCCEEEEEeccchHHHHhcChHhhhhccccccccccchHHHHHHHHHhhccCCCEEEECccc-HHHHHHHHH
Confidence 4689999999999999999999999999999999987653320247788999999999999999999999 999999999
Q ss_pred hCCCceeecccCCcccCCcccccceec---cCCCcchhhhHHHHHHHHHHHcCCCCCCCCCCCCCCCeeecCHHHHHHHH
Q 020516 81 TTARDRVSYIYPNVNAAGAGLLLSETF---TAESMNLSERGYNMYEQMVDWLGRPFRSVPRHPVPPLRVSISRRLKEVVA 157 (325)
Q Consensus 81 ~~a~~rig~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ll~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (325)
++++.|+||.+... +.++++... ..+.. +|.+++|..++..+|..... .....+.+..+..+....
T Consensus 101 ~~~~~r~g~~~~~~----r~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~- 169 (334)
T COG0859 101 LGIPFRIGFDKKSA----RELLLNKFYPRLDKPEG---QHVVERYLALLEDLGLYPPP---EPQLDFPLPRPPIELAKN- 169 (334)
T ss_pred hCCCcccccccccc----hhHHHHHhhhccCcccc---hhHHHHHHHHHHHhcCCCCC---CCccCcccccCHHHHHHH-
Confidence 99999999984221 222222222 23333 79999999999999873221 011113333333332221
Q ss_pred HHHHHcCCCCCCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCC-CEEEecCCCchHHHHhHHccCCC---
Q 020516 158 EKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFVIPHEKEREGVEDVVGDDAS--- 233 (325)
Q Consensus 158 ~~~~~~~~~~~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~-~vvl~g~~~e~~~~~~i~~~~~~--- 233 (325)
. ... .++||+|+||++... +|+||.|+|++|++.+.+++ .|+|+|+++|.+.++++.+.+++
T Consensus 170 -~-~~~---~~~~i~i~pg~s~~~---------~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~~~~~~~~ 235 (334)
T COG0859 170 -L-AKF---DRPYIVINPGASRGS---------AKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAKGLPNAVI 235 (334)
T ss_pred -H-Hhc---CCCeEEEeccccccc---------cCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHHhcCCccc
Confidence 1 111 168999999966532 68999999999999999999 99999999999999999987765
Q ss_pred cccccChHHHHHHHHhCCEEEecCchHHHHHHhcCCCEEEEecCCCCCccccCCCCCC--------ceeeeeC---CCCC
Q 020516 234 IVFITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIALFSSELKGRLFVPNAEEK--------KCTVISS---RTGK 302 (325)
Q Consensus 234 ~~~~~~~~el~ali~~a~l~I~~DTGp~HlAaAl~~P~iaLfg~t~p~~~~pp~~~~~--------~~~~~~~---~~~~ 302 (325)
+.+.++..|++++|++||++|||||||||||+|+|+|+|+|||+|.+.+|.| . .+. .|..+.. ...|
T Consensus 236 l~~k~sL~e~~~li~~a~l~I~~DSg~~HlAaA~~~P~I~iyg~t~~~~~~p-~-~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (334)
T COG0859 236 LAGKTSLEELAALIAGADLVIGNDSGPMHLAAALGTPTIALYGPTSPAFTPP-P-DPKLPGISGNLDCSPCKPSGGHHEC 313 (334)
T ss_pred cCCCCCHHHHHHHHhcCCEEEccCChHHHHHHHcCCCEEEEECCCCccccCC-C-CccceEeeccccccccccccchhcc
Confidence 4445667999999999999999999999999999999999999999888655 2 221 1111111 1249
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 020516 303 LIDTPVEAVLNAMQIFNE 320 (325)
Q Consensus 303 m~~I~~~~V~~~~~~~~~ 320 (325)
|.+|++++|++++..+..
T Consensus 314 ~~~i~~~~v~~~~~~~~~ 331 (334)
T COG0859 314 LKDIEPEKVLEAAEALLA 331 (334)
T ss_pred cccCCHHHHHHHHHHHhh
Confidence 999999999999988764
No 8
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=100.00 E-value=1.7e-41 Score=307.16 Aligned_cols=237 Identities=21% Similarity=0.239 Sum_probs=194.7
Q ss_pred ChhHhhhCCCCEEEEEeccCchhhhhhCCCCceEEEecCCCCCCCchhHHHHHHHHHhcCCcEEEEecCCchHHHHHHHH
Q 020516 1 MYLHITRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNRYYDMVLSTKLAGLGHAAFLFM 80 (325)
Q Consensus 1 ~~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~Vd~v~~~~~~~~~~~~~~~~~l~~~Lr~~~yDl~i~~~~~~~~~~~~~~~ 80 (325)
+++||++||+++|||++++.++.+++++|+||+|+.++.+...+++..+++++++|++++||++|+++.+ .++.+++++
T Consensus 20 l~~Lk~~~P~~~I~~l~~~~~~~l~~~~p~id~v~~~~~~~~~~~~~~~~~~~~~l~~~~~D~vi~~~~~-~~~~~~~~~ 98 (279)
T cd03789 20 LRALKARYPDARITVLAPPWFAPLLELMPEVDRVIVLPKKHGKLGLGARRRLARALRRRRYDLAIDLQGS-LRSALLPFL 98 (279)
T ss_pred HHHHHHHCCCCEEEEEEChhhHHHHhcCCccCEEEEcCCcccccchHHHHHHHHHHhhcCCCEEEECCCc-cHHHHHHHH
Confidence 3689999999999999999999999999999999999876423466788899999999999999999998 888899999
Q ss_pred hCCCceeecccCCcccCCcccccceeccCCCcchhhhHHHHHHHHHHHcCCCCCCCCCCCCCCCeeecCHHHHHHHHHHH
Q 020516 81 TTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRSVPRHPVPPLRVSISRRLKEVVAEKY 160 (325)
Q Consensus 81 ~~a~~rig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (325)
++++.++|+. ......++++.+
T Consensus 99 ~~~~~~~g~~-----~~~~~~~~~~~~----------------------------------------------------- 120 (279)
T cd03789 99 AGAPRRIGFD-----GERRRGLLTDVV----------------------------------------------------- 120 (279)
T ss_pred hCCCeEEEec-----CCcccccccccc-----------------------------------------------------
Confidence 9999999987 211111111000
Q ss_pred HHcCCCCCCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCC-CEEEecCCCchHHHHhHHccC--CC---c
Q 020516 161 KNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFVIPHEKEREGVEDVVGDD--AS---I 234 (325)
Q Consensus 161 ~~~~~~~~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~-~vvl~g~~~e~~~~~~i~~~~--~~---~ 234 (325)
+++|++|||+++. .|+||.|+|.+|++.|.+++ .++++|+++|++.++++.+.. .+ +
T Consensus 121 -------~~~i~i~~~~~~~----------~k~w~~~~~~~l~~~l~~~~~~ivl~g~~~e~~~~~~i~~~~~~~~~~~~ 183 (279)
T cd03789 121 -------KPVVVLPPGASGP----------AKRWPAERFAALADRLLARGARVVLTGGPAERELAEEIAAALGGPRVVNL 183 (279)
T ss_pred -------CCEEEECCCCCCc----------cccCCHHHHHHHHHHHHHCCCEEEEEechhhHHHHHHHHHhcCCCccccC
Confidence 5789999999864 47899999999999999876 899999999999888887654 12 2
Q ss_pred ccccChHHHHHHHHhCCEEEecCchHHHHHHhcCCCEEEEecCCCCCccccCCCCCCceeeeeC----------------
Q 020516 235 VFITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIALFSSELKGRLFVPNAEEKKCTVISS---------------- 298 (325)
Q Consensus 235 ~~~~~~~el~ali~~a~l~I~~DTGp~HlAaAl~~P~iaLfg~t~p~~~~pp~~~~~~~~~~~~---------------- 298 (325)
.+..+..|+++++++||++||+|||+||||+|+|+|+|+|||+++|.+|+| + +. ++..+..
T Consensus 184 ~~~~~l~e~~~li~~~~l~I~~Dsg~~HlA~a~~~p~i~l~g~~~~~~~~p-~-~~-~~~~i~~~~~c~~c~~~~~~~~~ 260 (279)
T cd03789 184 AGKTSLRELAALLARADLVVTNDSGPMHLAAALGTPTVALFGPTDPARTGP-P-GS-RHRVVRVDLPCCPCCFRRCCPLG 260 (279)
T ss_pred cCCCCHHHHHHHHHhCCEEEeeCCHHHHHHHHcCCCEEEEECCCCccccCC-C-CC-CeEEEEcCCCCCCCcCCCCCCCc
Confidence 223456899999999999999999999999999999999999999999999 7 33 2322211
Q ss_pred CCCCCCCCCHHHHHHHHH
Q 020516 299 RTGKLIDTPVEAVLNAMQ 316 (325)
Q Consensus 299 ~~~~m~~I~~~~V~~~~~ 316 (325)
...||..|+||+|++++.
T Consensus 261 ~~~c~~~i~~~~v~~~~~ 278 (279)
T cd03789 261 HHRCMRDITPEEVLAAIR 278 (279)
T ss_pred hhhHHHhCCHHHHHHHHh
Confidence 125899999999999875
No 9
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=100.00 E-value=9.4e-39 Score=284.07 Aligned_cols=229 Identities=21% Similarity=0.265 Sum_probs=156.1
Q ss_pred HHHHHHHHHhcCCcEEEEecCCchHHHHHHHHhCCCceeecccCCcccCCcccccceeccCCCcchhhhHHHHHHHHHH-
Q 020516 49 YTDILGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVD- 127 (325)
Q Consensus 49 ~~~l~~~Lr~~~yDl~i~~~~~~~~~~~~~~~~~a~~rig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~- 127 (325)
+++|+++||+++||++|+++.+ .++++++++++++.|+||..... ...++++..+..+.. .|.++++..++.
T Consensus 1 ~~~l~~~Lr~~~yD~vid~~~~-~~s~~l~~~~~a~~riG~~~~~~---~~~~~~~~~~~~~~~---~~~v~~~~~ll~~ 73 (247)
T PF01075_consen 1 ILALIKKLRKEKYDLVIDLQGS-FRSALLARLSGAKIRIGFGKDDR---GRSLFYNRKVDRPPN---KHMVDRYLSLLSE 73 (247)
T ss_dssp HHHHHHHHCTSB-SEEEE-S-S-HHHHHHTCCCSBSEEEEE-TTTS---GGGGGESEEE-TTSS---SSHHHHHHHHHHH
T ss_pred CHHHHHHHhCCCCCEEEECCCC-ccHHHHHHHHhhccccccCccch---hhhhccccccccccc---chHHHHHHHHHHH
Confidence 4689999999999999999998 99999999999999999983221 123566666665443 578888888886
Q ss_pred HcCCCCCCCCCCCCCCCeeecCHHHHHHHHHHHHHcCCCCCCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhh
Q 020516 128 WLGRPFRSVPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLR 207 (325)
Q Consensus 128 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~ 207 (325)
.+|++ .....+.+.+++++...+...+. ...+++|+|+||+++. .|+||.|+|++|++.|.
T Consensus 74 ~~~~~------~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~i~i~~~a~~~----------~k~wp~e~~~~l~~~l~ 134 (247)
T PF01075_consen 74 LLGIP------YPSTKPELPLSEEEEAAARELLK---SKDKPYIGINPGASWP----------SKRWPAEKWAELIERLK 134 (247)
T ss_dssp HHTS-------SSSSSS----THHHHTTHHTTTT----TTSSEEEEE---SSG----------GGS--HHHHHHHHHHHC
T ss_pred hcCCC------CCCCCcCCcCCHHHHHHHHHhhh---hccCCeEEEeecCCCc----------cccCCHHHHHHHHHHHH
Confidence 46773 22234567777777766554432 2357899999999985 48899999999999999
Q ss_pred cCC-CEEEecCCCc--hHHHHhHHccCC----CcccccChHHHHHHHHhCCEEEecCchHHHHHHhcCCCEEEEecCCCC
Q 020516 208 EFR-PLFVIPHEKE--REGVEDVVGDDA----SIVFITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIALFSSELK 280 (325)
Q Consensus 208 ~~~-~vvl~g~~~e--~~~~~~i~~~~~----~~~~~~~~~el~ali~~a~l~I~~DTGp~HlAaAl~~P~iaLfg~t~p 280 (325)
+++ .++|+|+++| ++.++++....+ ++.+.++..|++++|++||++||||||+||||+|+|+|+|+|||+|+|
T Consensus 135 ~~~~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ali~~a~~~I~~Dtg~~HlA~a~~~p~v~lfg~t~~ 214 (247)
T PF01075_consen 135 ERGYRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAALISRADLVIGNDTGPMHLAAALGTPTVALFGPTNP 214 (247)
T ss_dssp CCT-EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHHHHTSSEEEEESSHHHHHHHHTT--EEEEESSS-H
T ss_pred hhCceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHHHhcCCEEEecCChHHHHHHHHhCCEEEEecCCCH
Confidence 988 8999999988 556666665543 122234569999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCceeeeeCCCCCCCCC
Q 020516 281 GRLFVPNAEEKKCTVISSRTGKLIDT 306 (325)
Q Consensus 281 ~~~~pp~~~~~~~~~~~~~~~~m~~I 306 (325)
.+|+| + ++ +..++....+|....
T Consensus 215 ~~~~P-~-~~-~~~~i~~~~~c~pc~ 237 (247)
T PF01075_consen 215 ERWGP-Y-GE-NHQIIRSDLPCSPCF 237 (247)
T ss_dssp HHHS--T-SS-SEEEEECGGG-G---
T ss_pred HHhCC-C-CC-CEEEEecCCCCCCCC
Confidence 99998 8 54 555665444454433
No 10
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=99.15 E-value=1.3e-09 Score=102.29 Aligned_cols=104 Identities=14% Similarity=0.226 Sum_probs=74.9
Q ss_pred HHHHcCCC-CCCe--EEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCC-CEEEe---cCCCchHHHHhHHc--
Q 020516 159 KYKNAGAE-QGKY--IVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFVI---PHEKEREGVEDVVG-- 229 (325)
Q Consensus 159 ~~~~~~~~-~~~~--i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~-~vvl~---g~~~e~~~~~~i~~-- 229 (325)
..++++++ .++| |.+||+++. |.|+.++|.++++.|.+.. .++++ ++|.+....+.+.+
T Consensus 191 ~~~~lgl~~~~~~vlvt~Hp~~~~------------~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p~~~~i~~~i~~~~ 258 (365)
T TIGR03568 191 LEEKLGIDLDKPYALVTFHPVTLE------------KESAEEQIKELLKALDELNKNYIFTYPNADAGSRIINEAIEEYV 258 (365)
T ss_pred HHHHhCCCCCCCEEEEEeCCCccc------------ccCchHHHHHHHHHHHHhccCCEEEEeCCCCCchHHHHHHHHHh
Confidence 44556665 3477 678887653 5599999999999998765 44444 44656444443332
Q ss_pred -cCCCccccc--ChHHHHHHHHhCCEEEecCchHHHHHHhcCCCEEEE
Q 020516 230 -DDASIVFIT--TPGQLAALINDSAGVIATNTAAIQLANAREKPSIAL 274 (325)
Q Consensus 230 -~~~~~~~~~--~~~el~ali~~a~l~I~~DTGp~HlAaAl~~P~iaL 274 (325)
..+++.... ...++.++++.|+++||+|||++|.|+++|+|+|.+
T Consensus 259 ~~~~~v~l~~~l~~~~~l~Ll~~a~~vitdSSggi~EA~~lg~Pvv~l 306 (365)
T TIGR03568 259 NEHPNFRLFKSLGQERYLSLLKNADAVIGNSSSGIIEAPSFGVPTINI 306 (365)
T ss_pred cCCCCEEEECCCChHHHHHHHHhCCEEEEcChhHHHhhhhcCCCEEee
Confidence 234444222 227999999999999999999999999999999977
No 11
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=98.45 E-value=6.1e-06 Score=78.87 Aligned_cols=117 Identities=6% Similarity=0.017 Sum_probs=73.8
Q ss_pred HHHHHHHHHhhcCC-CEEEecC--------CCchHHHHhHHccCCCc---ccc---cChHHHHHHHHhCCEEEecCchHH
Q 020516 197 QVWAEIANGLREFR-PLFVIPH--------EKEREGVEDVVGDDASI---VFI---TTPGQLAALINDSAGVIATNTAAI 261 (325)
Q Consensus 197 e~~~~l~~~l~~~~-~vvl~g~--------~~e~~~~~~i~~~~~~~---~~~---~~~~el~ali~~a~l~I~~DTGp~ 261 (325)
+.++++++.|.+++ .++++.. ++|...++++.+.+++. ..+ .++.|+..+|++||++||.=-=.+
T Consensus 260 ~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~~~~~~~~vi~~~~~~~e~~~iIs~~dl~ig~RlHa~ 339 (426)
T PRK10017 260 KAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRMVALNLRQHVSDPARYHVVMDELNDLEMGKILGACELTVGTRLHSA 339 (426)
T ss_pred HHHHHHHHHHHHCCCeEEEEecccCccCCCCchHHHHHHHHHhcccccceeEecCCCChHHHHHHHhhCCEEEEecchHH
Confidence 45667888887777 7777753 55666677776654321 111 134689999999999999998888
Q ss_pred HHHHhcCCCEEEEecCCCCCccccCCCCCCceeeeeCCCCCCCCCCHHHHHHHHHHHHH
Q 020516 262 QLANAREKPSIALFSSELKGRLFVPNAEEKKCTVISSRTGKLIDTPVEAVLNAMQIFNE 320 (325)
Q Consensus 262 HlAaAl~~P~iaLfg~t~p~~~~pp~~~~~~~~~~~~~~~~m~~I~~~~V~~~~~~~~~ 320 (325)
=+|++.|||+|+|=-..--..+.--. +-... . ..+++++++++++.+.++..
T Consensus 340 I~a~~~gvP~i~i~Y~~K~~~~~~~l-g~~~~-~-----~~~~~l~~~~Li~~v~~~~~ 391 (426)
T PRK10017 340 IISMNFGTPAIAINYEHKSAGIMQQL-GLPEM-A-----IDIRHLLDGSLQAMVADTLG 391 (426)
T ss_pred HHHHHcCCCEEEeeehHHHHHHHHHc-CCccE-E-----echhhCCHHHHHHHHHHHHh
Confidence 89999999999984321111111101 00011 0 12457777777777766544
No 12
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.14 E-value=8.7e-06 Score=76.69 Aligned_cols=106 Identities=11% Similarity=0.164 Sum_probs=66.0
Q ss_pred HHHcCCCC-CCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCC---CEEEecC-CCchHHHHhHHccC--C
Q 020516 160 YKNAGAEQ-GKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR---PLFVIPH-EKEREGVEDVVGDD--A 232 (325)
Q Consensus 160 ~~~~~~~~-~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~---~vvl~g~-~~e~~~~~~i~~~~--~ 232 (325)
..++++.+ ++.|++.+|+.... .....+.+.+.++.+.++. .+++.++ +.+++..++..... .
T Consensus 177 ~~~l~~~~~~~~il~~~gsr~~~----------~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~ 246 (380)
T PRK00025 177 RARLGLDPDARVLALLPGSRGQE----------IKRLLPPFLKAAQLLQQRYPDLRFVLPLVNPKRREQIEEALAEYAGL 246 (380)
T ss_pred HHHcCCCCCCCEEEEECCCCHHH----------HHHHHHHHHHHHHHHHHhCCCeEEEEecCChhhHHHHHHHHhhcCCC
Confidence 34466654 44566777754321 1144566777777776543 5667666 55555555554433 1
Q ss_pred CcccccChHHHHHHHHhCCEEEecCchHHHH-HHhcCCCEEEEecCC
Q 020516 233 SIVFITTPGQLAALINDSAGVIATNTAAIQL-ANAREKPSIALFSSE 278 (325)
Q Consensus 233 ~~~~~~~~~el~ali~~a~l~I~~DTGp~Hl-AaAl~~P~iaLfg~t 278 (325)
+.. + ..+++..+++.||++|+. ||.+-+ |.++|+|+|+.|...
T Consensus 247 ~v~-~-~~~~~~~~~~~aDl~v~~-sG~~~lEa~a~G~PvI~~~~~~ 290 (380)
T PRK00025 247 EVT-L-LDGQKREAMAAADAALAA-SGTVTLELALLKVPMVVGYKVS 290 (380)
T ss_pred CeE-E-EcccHHHHHHhCCEEEEC-ccHHHHHHHHhCCCEEEEEccC
Confidence 222 1 125899999999999994 455554 799999999999653
No 13
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=97.91 E-value=0.00079 Score=62.28 Aligned_cols=235 Identities=14% Similarity=0.207 Sum_probs=125.3
Q ss_pred CCEEEEEeccCch--hhhhhCCCCceEEEecCCCCC-----CCchhHHHHHHHHHhcCCcEEEEecCCchHHHHHHHHhC
Q 020516 10 GVLIDVIASARGK--QTFELNKNVRWANVYDLDDDW-----PEPAEYTDILGVMKNRYYDMVLSTKLAGLGHAAFLFMTT 82 (325)
Q Consensus 10 ~a~I~~l~~~~~~--~l~~~~p~Vd~v~~~~~~~~~-----~~~~~~~~l~~~Lr~~~yDl~i~~~~~~~~~~~~~~~~~ 82 (325)
+.++.+.++.... .+++.. +++-+..=...... ..+....++++.+++.++|++|... + ......++.+|
T Consensus 27 GheV~it~R~~~~~~~LL~~y-g~~y~~iG~~g~~~~~Kl~~~~~R~~~l~~~~~~~~pDv~is~~-s-~~a~~va~~lg 103 (335)
T PF04007_consen 27 GHEVLITARDKDETEELLDLY-GIDYIVIGKHGDSLYGKLLESIERQYKLLKLIKKFKPDVAISFG-S-PEAARVAFGLG 103 (335)
T ss_pred CCEEEEEEeccchHHHHHHHc-CCCeEEEcCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCEEEecC-c-HHHHHHHHHhC
Confidence 5577777766553 455543 66544322222110 0122335677788899999999754 3 56667888999
Q ss_pred CCceeecccCCcccCCcc--cccceeccCCCcchhhhHHHHHHHHHHHcCCC-----CCCCCCCC-CCCCeeecCHHHHH
Q 020516 83 ARDRVSYIYPNVNAAGAG--LLLSETFTAESMNLSERGYNMYEQMVDWLGRP-----FRSVPRHP-VPPLRVSISRRLKE 154 (325)
Q Consensus 83 a~~rig~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ll~~lg~~-----~~~~~~~~-~~~~~~~~~~~~~~ 154 (325)
+|. |.|....+.....+ +-+.+.+-.+. .+. ...+..+|.. +.++.+.. ..+ +...
T Consensus 104 iP~-I~f~D~e~a~~~~~Lt~Pla~~i~~P~------~~~--~~~~~~~G~~~~i~~y~G~~E~ayl~~--F~Pd----- 167 (335)
T PF04007_consen 104 IPS-IVFNDTEHAIAQNRLTLPLADVIITPE------AIP--KEFLKRFGAKNQIRTYNGYKELAYLHP--FKPD----- 167 (335)
T ss_pred CCe-EEEecCchhhccceeehhcCCeeECCc------ccC--HHHHHhcCCcCCEEEECCeeeEEeecC--CCCC-----
Confidence 985 45553332221111 01112221111 111 1123344542 11111100 011 1111
Q ss_pred HHHHHHHHcCCCCCCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCC-CEEEecCCCchHHHHhHHccCCC
Q 020516 155 VVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFVIPHEKEREGVEDVVGDDAS 233 (325)
Q Consensus 155 ~~~~~~~~~~~~~~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~-~vvl~g~~~e~~~~~~i~~~~~~ 233 (325)
.+.++++|+++.+||++-+.+..+. .-. +..+-..++++.|.+.+ .+|++...++.. ++.+.+.
T Consensus 168 --~~vl~~lg~~~~~yIvvR~~~~~A~---y~~------~~~~i~~~ii~~L~~~~~~vV~ipr~~~~~---~~~~~~~- 232 (335)
T PF04007_consen 168 --PEVLKELGLDDEPYIVVRPEAWKAS---YDN------GKKSILPEIIEELEKYGRNVVIIPRYEDQR---ELFEKYG- 232 (335)
T ss_pred --hhHHHHcCCCCCCEEEEEeccccCe---eec------CccchHHHHHHHHHhhCceEEEecCCcchh---hHHhccC-
Confidence 2356677877889999887664432 111 23344668999998888 466665443332 1222332
Q ss_pred cccccChHHHHHHHHhCCEEEecCchHHHHHHhcCCCEEEEecCC
Q 020516 234 IVFITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIALFSSE 278 (325)
Q Consensus 234 ~~~~~~~~el~ali~~a~l~I~~DTGp~HlAaAl~~P~iaLfg~t 278 (325)
+.+...+-+...|+..||++||.-.-..-=||.+|||+|..|...
T Consensus 233 ~~i~~~~vd~~~Ll~~a~l~Ig~ggTMa~EAA~LGtPaIs~~~g~ 277 (335)
T PF04007_consen 233 VIIPPEPVDGLDLLYYADLVIGGGGTMAREAALLGTPAISCFPGK 277 (335)
T ss_pred ccccCCCCCHHHHHHhcCEEEeCCcHHHHHHHHhCCCEEEecCCc
Confidence 221222235568999999999865555566899999999998533
No 14
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=97.76 E-value=0.0006 Score=63.98 Aligned_cols=289 Identities=16% Similarity=0.123 Sum_probs=145.3
Q ss_pred ChhHhhhCCCCEEEEEeccCchhhhhhCCCCceEEEecCCCC------CCCchhH----HHHHHHHHhcCCcEEEEecCC
Q 020516 1 MYLHITRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDD------WPEPAEY----TDILGVMKNRYYDMVLSTKLA 70 (325)
Q Consensus 1 ~~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~Vd~v~~~~~~~~------~~~~~~~----~~l~~~Lr~~~yDl~i~~~~~ 70 (325)
|++||+++|+.++.=+..+..+. -+++-++.++.-.- ++.+..+ .++.+.+.+++.|++|....-
T Consensus 18 i~~Lk~~~p~~~~~GvGG~~M~~-----~G~~~l~d~~~lsvmG~~Evl~~l~~~~~~~~~~~~~~~~~~pd~vIlID~p 92 (373)
T PF02684_consen 18 IRALKARDPDIEFYGVGGPRMQA-----AGVESLFDMEELSVMGFVEVLKKLPKLKRLFRKLVERIKEEKPDVVILIDYP 92 (373)
T ss_pred HHHHHhhCCCcEEEEEechHHHh-----CCCceecchHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 57899999999999999887654 25544443332110 0111112 234445678999999966433
Q ss_pred c--hHHHHHHHHhCCCcee-ecccCCcccCCcc------cccceeccCCCcchhhhHHHHHHHHHHHcCCCCCCCCCCCC
Q 020516 71 G--LGHAAFLFMTTARDRV-SYIYPNVNAAGAG------LLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRSVPRHPV 141 (325)
Q Consensus 71 ~--~~~~~~~~~~~a~~ri-g~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ll~~lg~~~~~~~~~~~ 141 (325)
| ++.+-.+.-.|.+.++ =|..|.+=.|+.+ -..++.+.+-+- ..+ +.+..|++..=+ -.
T Consensus 93 gFNlrlak~lk~~~~~~~viyYI~PqvWAWr~~R~~~i~~~~D~ll~ifPF-----E~~----~y~~~g~~~~~V---GH 160 (373)
T PF02684_consen 93 GFNLRLAKKLKKRGIPIKVIYYISPQVWAWRPGRAKKIKKYVDHLLVIFPF-----EPE----FYKKHGVPVTYV---GH 160 (373)
T ss_pred CccHHHHHHHHHhCCCceEEEEECCceeeeCccHHHHHHHHHhheeECCcc-----cHH----HHhccCCCeEEE---CC
Confidence 2 5666666667776433 3333332121110 011111111100 011 112223311000 00
Q ss_pred CCCeeecCHHHHHHHHHHHHHcCCC-CCCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCC---CEEEecC
Q 020516 142 PPLRVSISRRLKEVVAEKYKNAGAE-QGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR---PLFVIPH 217 (325)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~---~vvl~g~ 217 (325)
|-.+..-+........+ .. ++ .+++|++-|||+..- -.+.+| -|.+.++.+.++. .+++...
T Consensus 161 Pl~d~~~~~~~~~~~~~---~~-l~~~~~iIaLLPGSR~~E--------I~rllP--~~l~aa~~l~~~~p~l~fvvp~a 226 (373)
T PF02684_consen 161 PLLDEVKPEPDRAEARE---KL-LDPDKPIIALLPGSRKSE--------IKRLLP--IFLEAAKLLKKQRPDLQFVVPVA 226 (373)
T ss_pred cchhhhccCCCHHHHHH---hc-CCCCCcEEEEeCCCCHHH--------HHHHHH--HHHHHHHHHHHhCCCeEEEEecC
Confidence 11110001111111111 22 33 577899999998753 123455 7888888888765 4555555
Q ss_pred CCch-HHHHhHHccC-CCcccccChHHHHHHHHhCCEEEecCchHHHHHHhcCCCEEEEecCCCCCccccC-CCCCCcee
Q 020516 218 EKER-EGVEDVVGDD-ASIVFITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIALFSSELKGRLFVP-NAEEKKCT 294 (325)
Q Consensus 218 ~~e~-~~~~~i~~~~-~~~~~~~~~~el~ali~~a~l~I~~DTGp~HlAaAl~~P~iaLfg~t~p~~~~pp-~~~~~~~~ 294 (325)
+... +.++++.... .+.......++...+++.||+.+....=.+==|+.+|+|+|..|-.+.-..+..- ... .+++
T Consensus 227 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~al~~SGTaTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk-~~~i 305 (373)
T PF02684_consen 227 PEVHEELIEEILAEYPPDVSIVIIEGESYDAMAAADAALAASGTATLEAALLGVPMVVAYKVSPLTYFIAKRLVK-VKYI 305 (373)
T ss_pred CHHHHHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcchhhcCCHHHHHHHHhCCCEEEEEcCcHHHHHHHHHhhc-CCEe
Confidence 5433 3345554433 2222122236788899999997766444444568899999999997754332210 000 0111
Q ss_pred ee-----eC---CCCCCCCCCHHHHHHHHHHHHHh
Q 020516 295 VI-----SS---RTGKLIDTPVEAVLNAMQIFNES 321 (325)
Q Consensus 295 ~~-----~~---~~~~m~~I~~~~V~~~~~~~~~~ 321 (325)
.+ .. ++---.+-+|+.+.+++.++..+
T Consensus 306 sL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~ 340 (373)
T PF02684_consen 306 SLPNIIAGREVVPELIQEDATPENIAAELLELLEN 340 (373)
T ss_pred echhhhcCCCcchhhhcccCCHHHHHHHHHHHhcC
Confidence 11 10 00012456788888888776543
No 15
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=97.65 E-value=0.0014 Score=61.18 Aligned_cols=79 Identities=15% Similarity=0.141 Sum_probs=45.9
Q ss_pred HHHHHHHHHhhcCC-CEEEecCCCchHHHHhHHccC----CCccccc--ChHHHHHHHHhCCEEEecCchHHHHHHhcCC
Q 020516 197 QVWAEIANGLREFR-PLFVIPHEKEREGVEDVVGDD----ASIVFIT--TPGQLAALINDSAGVIATNTAAIQLANAREK 269 (325)
Q Consensus 197 e~~~~l~~~l~~~~-~vvl~g~~~e~~~~~~i~~~~----~~~~~~~--~~~el~ali~~a~l~I~~DTGp~HlAaAl~~ 269 (325)
+.+.+.++.+.+.. .+++.+++..++.+++..... .++.+.. ...++..+++.||++|++-+|..==|.+.|+
T Consensus 218 ~~l~~al~~l~~~~~~vi~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ad~~v~~Sggi~~Ea~~~g~ 297 (363)
T cd03786 218 EEILEALAELAEEDVPVVFPNHPRTRPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLKNADLVLTDSGGIQEEASFLGV 297 (363)
T ss_pred HHHHHHHHHHHhcCCEEEEECCCChHHHHHHHHHhhccCCCCEEEECCcCHHHHHHHHHcCcEEEEcCccHHhhhhhcCC
Confidence 34444444443332 344434555455555544322 2333221 2257899999999999887766545556789
Q ss_pred CEEEEe
Q 020516 270 PSIALF 275 (325)
Q Consensus 270 P~iaLf 275 (325)
|+|++-
T Consensus 298 PvI~~~ 303 (363)
T cd03786 298 PVLNLR 303 (363)
T ss_pred CEEeeC
Confidence 999963
No 16
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=97.57 E-value=0.023 Score=51.41 Aligned_cols=68 Identities=13% Similarity=0.209 Sum_probs=49.5
Q ss_pred CEEEecCCC--chHHHHhHHccCCCcccccChHHHHHHHHhCCEEEecCchHHHHHHhcCCCEEEEecCC
Q 020516 211 PLFVIPHEK--EREGVEDVVGDDASIVFITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIALFSSE 278 (325)
Q Consensus 211 ~vvl~g~~~--e~~~~~~i~~~~~~~~~~~~~~el~ali~~a~l~I~~DTGp~HlAaAl~~P~iaLfg~t 278 (325)
++.++.|+. ..+.+++..+..+++.......++..+++.||++||.-++.+.=+.++|+|+|++--..
T Consensus 201 ~i~vv~G~~~~~~~~l~~~~~~~~~i~~~~~~~~m~~lm~~aDl~Is~~G~T~~E~~a~g~P~i~i~~~~ 270 (279)
T TIGR03590 201 SITLVTGSSNPNLDELKKFAKEYPNIILFIDVENMAELMNEADLAIGAAGSTSWERCCLGLPSLAICLAE 270 (279)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCEEEEeCHHHHHHHHHHCCEEEECCchHHHHHHHcCCCEEEEEecc
Confidence 455555543 34455555555556543445578999999999999998888899999999999885543
No 17
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=97.56 E-value=0.009 Score=54.46 Aligned_cols=101 Identities=13% Similarity=0.134 Sum_probs=63.5
Q ss_pred HHcCCCCCCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCC---CEEEecCCCchHHHHhHHc-cC--C-C
Q 020516 161 KNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR---PLFVIPHEKEREGVEDVVG-DD--A-S 233 (325)
Q Consensus 161 ~~~~~~~~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~---~vvl~g~~~e~~~~~~i~~-~~--~-~ 233 (325)
++.++++++.+++..|.-.. .| ..+.+.+.+..+.++. .++++|...+.+..++... .. . +
T Consensus 185 ~~~~~~~~~~~i~~~G~~~~----------~K--~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~ 252 (365)
T cd03807 185 EELGLPEDTFLIGIVARLHP----------QK--DHATLLRAAALLLKKFPNARLLLVGDGPDRANLELLALKELGLEDK 252 (365)
T ss_pred HhcCCCCCCeEEEEecccch----------hc--CHHHHHHHHHHHHHhCCCeEEEEecCCcchhHHHHHHHHhcCCCce
Confidence 34566555555555544321 22 4567777777776543 6777776655555444443 21 1 2
Q ss_pred cccccChHHHHHHHHhCCEEEecCc-----hHHHHHHhcCCCEEE
Q 020516 234 IVFITTPGQLAALINDSAGVIATNT-----AAIQLANAREKPSIA 273 (325)
Q Consensus 234 ~~~~~~~~el~ali~~a~l~I~~DT-----Gp~HlAaAl~~P~ia 273 (325)
+.+.....++..+++.||++|.+-. ..+.=|.++|+|+|+
T Consensus 253 v~~~g~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~g~PvI~ 297 (365)
T cd03807 253 VILLGERSDVPALLNALDVFVLSSLSEGFPNVLLEAMACGLPVVA 297 (365)
T ss_pred EEEccccccHHHHHHhCCEEEeCCccccCCcHHHHHHhcCCCEEE
Confidence 2222223688999999999997654 478899999999998
No 18
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=97.52 E-value=0.0054 Score=58.38 Aligned_cols=103 Identities=14% Similarity=0.074 Sum_probs=63.8
Q ss_pred CCCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCC--CEEEec-CCCchHHHHhHHcc--CC---------
Q 020516 167 QGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR--PLFVIP-HEKEREGVEDVVGD--DA--------- 232 (325)
Q Consensus 167 ~~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~--~vvl~g-~~~e~~~~~~i~~~--~~--------- 232 (325)
..+.|++.|||+... ..+. ...+.+.++.|.++. .+++.. +..+.+.+++.... ..
T Consensus 204 ~~~~lllLpGSR~ae--------~~~~--lp~~l~al~~L~~~~~~~~v~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 273 (396)
T TIGR03492 204 GRFRIALLPGSRPPE--------AYRN--LKLLLRALEALPDSQPFVFLAAIVPSLSLEKLQAILEDLGWQLEGSSEDQT 273 (396)
T ss_pred CCCEEEEECCCCHHH--------HHcc--HHHHHHHHHHHhhCCCeEEEEEeCCCCCHHHHHHHHHhcCceecCCccccc
Confidence 346888999988643 1122 347778888886432 444443 44444444443321 11
Q ss_pred ------CcccccChHHHHHHHHhCCEEEecCchHHHHHHhcCCCEEEEecCCC
Q 020516 233 ------SIVFITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIALFSSEL 279 (325)
Q Consensus 233 ------~~~~~~~~~el~ali~~a~l~I~~DTGp~HlAaAl~~P~iaLfg~t~ 279 (325)
+..+.....++..+++.||++||.-.+.+==++++|+|+|.+|++.+
T Consensus 274 ~~~~~~~~~v~~~~~~~~~~l~~ADlvI~rSGt~T~E~a~lg~P~Ilip~~~~ 326 (396)
T TIGR03492 274 SLFQKGTLEVLLGRGAFAEILHWADLGIAMAGTATEQAVGLGKPVIQLPGKGP 326 (396)
T ss_pred hhhccCceEEEechHhHHHHHHhCCEEEECcCHHHHHHHHhCCCEEEEeCCCC
Confidence 11211223578999999999999866666338899999999997643
No 19
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=97.50 E-value=0.0012 Score=64.98 Aligned_cols=109 Identities=8% Similarity=0.023 Sum_probs=69.7
Q ss_pred HHHcCCC-CCCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHH--HhhcCCCEEEecCCC-chHHHHhHHccCC--C
Q 020516 160 YKNAGAE-QGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIAN--GLREFRPLFVIPHEK-EREGVEDVVGDDA--S 233 (325)
Q Consensus 160 ~~~~~~~-~~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~--~l~~~~~vvl~g~~~-e~~~~~~i~~~~~--~ 233 (325)
.++.+++ +++.|++-|||+..- -.+.+| -+.+.++ .+.++..+++...+. +++.+++..+..+ .
T Consensus 404 r~~lgl~~~~~iIaLLPGSR~~E--------I~rllP--v~l~aa~~~~l~~~l~fvvp~a~~~~~~~i~~~~~~~~~~~ 473 (608)
T PRK01021 404 KEQLHLPSDKPIVAAFPGSRRGD--------ILRNLT--IQVQAFLASSLASTHQLLVSSANPKYDHLILEVLQQEGCLH 473 (608)
T ss_pred HHHcCCCCCCCEEEEECCCCHHH--------HHHHHH--HHHHHHHHHHhccCeEEEEecCchhhHHHHHHHHhhcCCCC
Confidence 4456775 568999999998753 123455 6777777 555544555543333 3466666554322 1
Q ss_pred cccccChHHHHHHHHhCCEEEecCchHHHHHHhcCCCEEEEecCCC
Q 020516 234 IVFITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIALFSSEL 279 (325)
Q Consensus 234 ~~~~~~~~el~ali~~a~l~I~~DTGp~HlAaAl~~P~iaLfg~t~ 279 (325)
...+. ..+...+++.||+.++...=.+==|+.+|+|+|+.|-.+.
T Consensus 474 ~~ii~-~~~~~~~m~aaD~aLaaSGTaTLEaAL~g~PmVV~YK~s~ 518 (608)
T PRK01021 474 SHIVP-SQFRYELMRECDCALAKCGTIVLETALNQTPTIVTCQLRP 518 (608)
T ss_pred eEEec-CcchHHHHHhcCeeeecCCHHHHHHHHhCCCEEEEEecCH
Confidence 12121 1235789999999888766666668899999999997663
No 20
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=97.48 E-value=0.0034 Score=59.11 Aligned_cols=99 Identities=15% Similarity=0.163 Sum_probs=58.4
Q ss_pred HHHcCCCC-CCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcC-C-CEEEecCCC--chHHHHhHHccCC-C
Q 020516 160 YKNAGAEQ-GKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREF-R-PLFVIPHEK--EREGVEDVVGDDA-S 233 (325)
Q Consensus 160 ~~~~~~~~-~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~-~-~vvl~g~~~--e~~~~~~i~~~~~-~ 233 (325)
..++++.+ ++++++.+|+-.. . ..+.++++.+.+. . ++++++|.. .++.+++.....+ +
T Consensus 193 ~~~~~l~~~~~~il~~~G~~~~----------~-----k~~~~li~~l~~~~~~~~viv~G~~~~~~~~l~~~~~~~~~~ 257 (380)
T PRK13609 193 YNKYQLCPNKKILLIMAGAHGV----------L-----GNVKELCQSLMSVPDLQVVVVCGKNEALKQSLEDLQETNPDA 257 (380)
T ss_pred HHHcCCCCCCcEEEEEcCCCCC----------C-----cCHHHHHHHHhhCCCcEEEEEeCCCHHHHHHHHHHHhcCCCc
Confidence 44567764 4556665543221 1 2455667666543 2 666666543 3345555544443 3
Q ss_pred cccccChHHHHHHHHhCCEEEecCchHH--HHHHhcCCCEEEE
Q 020516 234 IVFITTPGQLAALINDSAGVIATNTAAI--QLANAREKPSIAL 274 (325)
Q Consensus 234 ~~~~~~~~el~ali~~a~l~I~~DTGp~--HlAaAl~~P~iaL 274 (325)
+.+.....++..+++.||++|+ ++|++ -=|.|.|+|+|+.
T Consensus 258 v~~~g~~~~~~~l~~~aD~~v~-~~gg~t~~EA~a~g~PvI~~ 299 (380)
T PRK13609 258 LKVFGYVENIDELFRVTSCMIT-KPGGITLSEAAALGVPVILY 299 (380)
T ss_pred EEEEechhhHHHHHHhccEEEe-CCCchHHHHHHHhCCCEEEC
Confidence 4323223467899999999998 55554 3579999998764
No 21
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=97.28 E-value=0.0078 Score=57.14 Aligned_cols=77 Identities=12% Similarity=0.150 Sum_probs=45.5
Q ss_pred HHHHHHHHhhcC--C-CEEEecCCCch--HHHHhHHccCCCcccccChHHHHHHHHhCCEEEecCchHHH--HHHhcCCC
Q 020516 198 VWAEIANGLREF--R-PLFVIPHEKER--EGVEDVVGDDASIVFITTPGQLAALINDSAGVIATNTAAIQ--LANAREKP 270 (325)
Q Consensus 198 ~~~~l~~~l~~~--~-~vvl~g~~~e~--~~~~~i~~~~~~~~~~~~~~el~ali~~a~l~I~~DTGp~H--lAaAl~~P 270 (325)
.+.++++.+.+. . .+++++|..+. +..++......++.+.....++..+++.||++|+ .+|++= =|.|.|+|
T Consensus 217 ~~~~li~~~~~~~~~~~~vvv~G~~~~l~~~l~~~~~~~~~v~~~G~~~~~~~~~~~aDl~I~-k~gg~tl~EA~a~G~P 295 (391)
T PRK13608 217 GFDTMITDILAKSANAQVVMICGKSKELKRSLTAKFKSNENVLILGYTKHMNEWMASSQLMIT-KPGGITISEGLARCIP 295 (391)
T ss_pred hHHHHHHHHHhcCCCceEEEEcCCCHHHHHHHHHHhccCCCeEEEeccchHHHHHHhhhEEEe-CCchHHHHHHHHhCCC
Confidence 455555554332 2 56666665432 2232222222333322223578999999999998 456644 47899999
Q ss_pred EEEEe
Q 020516 271 SIALF 275 (325)
Q Consensus 271 ~iaLf 275 (325)
+|+.-
T Consensus 296 vI~~~ 300 (391)
T PRK13608 296 MIFLN 300 (391)
T ss_pred EEECC
Confidence 99973
No 22
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=97.24 E-value=0.018 Score=55.10 Aligned_cols=77 Identities=16% Similarity=0.045 Sum_probs=42.7
Q ss_pred hhHhhhCCCCEEEEEeccC-chhhhh-hCC-CCceEEEecCCCCCCCchhHHHHHHHHHhcCCcEEEEecCCchHHHHH-
Q 020516 2 YLHITRYPGVLIDVIASAR-GKQTFE-LNK-NVRWANVYDLDDDWPEPAEYTDILGVMKNRYYDMVLSTKLAGLGHAAF- 77 (325)
Q Consensus 2 ~~Lk~~~P~a~I~~l~~~~-~~~l~~-~~p-~Vd~v~~~~~~~~~~~~~~~~~l~~~Lr~~~yDl~i~~~~~~~~~~~~- 77 (325)
+.|++.+|+.+|.+.+... ..++.+ ..+ .+ .+..++... ...+.+.|++.++|+++..... ....++
T Consensus 71 ~~l~~~~~~~~i~~t~~t~~~~~~~~~~~~~~~-~~~~~P~d~-------~~~~~~~l~~~~Pd~v~~~~~~-~~~~~l~ 141 (425)
T PRK05749 71 RALRKRYPDLPILVTTMTPTGSERAQALFGDDV-EHRYLPYDL-------PGAVRRFLRFWRPKLVIIMETE-LWPNLIA 141 (425)
T ss_pred HHHHHhCCCCcEEEeCCCccHHHHHHHhcCCCc-eEEEecCCc-------HHHHHHHHHhhCCCEEEEEecc-hhHHHHH
Confidence 5788999999886665322 234443 223 34 344444322 1344555788999999876544 333333
Q ss_pred -HHHhCCCcee
Q 020516 78 -LFMTTARDRV 87 (325)
Q Consensus 78 -~~~~~a~~ri 87 (325)
+...|+|..+
T Consensus 142 ~~~~~~ip~vl 152 (425)
T PRK05749 142 ELKRRGIPLVL 152 (425)
T ss_pred HHHHCCCCEEE
Confidence 2344566443
No 23
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=97.16 E-value=0.022 Score=53.30 Aligned_cols=75 Identities=12% Similarity=0.046 Sum_probs=47.6
Q ss_pred HHHHHHHHHhhcCCCEEEecCCCchHHHHhHHccCCCcccccCh-HHHHHHHHhCCEEEecCchH-HHHHHhcCCCEEEE
Q 020516 197 QVWAEIANGLREFRPLFVIPHEKEREGVEDVVGDDASIVFITTP-GQLAALINDSAGVIATNTAA-IQLANAREKPSIAL 274 (325)
Q Consensus 197 e~~~~l~~~l~~~~~vvl~g~~~e~~~~~~i~~~~~~~~~~~~~-~el~ali~~a~l~I~~DTGp-~HlAaAl~~P~iaL 274 (325)
+-+.+++..+....+++...|..+.+...+ ...+.....-. .++..+++.||++||.-+|. +.=+.++|+|+|.+
T Consensus 202 ~~~~~~l~~l~~~~~vv~~~G~~~~~~~~~---~~~~~~~~~f~~~~m~~~~~~adlvIsr~G~~t~~E~~~~g~P~I~i 278 (352)
T PRK12446 202 ETVREALPELLLKYQIVHLCGKGNLDDSLQ---NKEGYRQFEYVHGELPDILAITDFVISRAGSNAIFEFLTLQKPMLLI 278 (352)
T ss_pred HHHHHHHHhhccCcEEEEEeCCchHHHHHh---hcCCcEEecchhhhHHHHHHhCCEEEECCChhHHHHHHHcCCCEEEE
Confidence 445555555543346777777665433221 11121112222 46889999999999996555 48999999999999
No 24
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=97.15 E-value=0.049 Score=50.07 Aligned_cols=102 Identities=13% Similarity=0.103 Sum_probs=65.4
Q ss_pred HHHcCCCCCCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCC---CEEEecCCCchHHHHhHHccC---CC
Q 020516 160 YKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR---PLFVIPHEKEREGVEDVVGDD---AS 233 (325)
Q Consensus 160 ~~~~~~~~~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~---~vvl~g~~~e~~~~~~i~~~~---~~ 233 (325)
.++.++.+++.+++..|.-.. .| ..+.+.+.+..+.++. .++++|+..+.+..++..... .+
T Consensus 179 ~~~~~~~~~~~~~l~~g~~~~----------~k--g~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~ 246 (360)
T cd04951 179 RNALGVKNDTFVILAVGRLVE----------AK--DYPNLLKAFAKLLSDYLDIKLLIAGDGPLRATLERLIKALGLSNR 246 (360)
T ss_pred HHHcCcCCCCEEEEEEeeCch----------hc--CcHHHHHHHHHHHhhCCCeEEEEEcCCCcHHHHHHHHHhcCCCCc
Confidence 344556556666676654321 22 3356777777776542 677787666655555544432 23
Q ss_pred cccccChHHHHHHHHhCCEEEecC-----chHHHHHHhcCCCEEE
Q 020516 234 IVFITTPGQLAALINDSAGVIATN-----TAAIQLANAREKPSIA 273 (325)
Q Consensus 234 ~~~~~~~~el~ali~~a~l~I~~D-----TGp~HlAaAl~~P~ia 273 (325)
+.+.....++..+++.||++|.+- +..+-=|.|.|+|+|+
T Consensus 247 v~~~g~~~~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~PvI~ 291 (360)
T cd04951 247 VKLLGLRDDIAAYYNAADLFVLSSAWEGFGLVVAEAMACELPVVA 291 (360)
T ss_pred EEEecccccHHHHHHhhceEEecccccCCChHHHHHHHcCCCEEE
Confidence 333333368889999999999875 4566778999999997
No 25
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.11 E-value=0.083 Score=48.81 Aligned_cols=76 Identities=16% Similarity=0.088 Sum_probs=48.1
Q ss_pred HHHHHHhhcCC-CEEEecCCCchHHHHhHHccC-CCcccccChHHHHHHHHhCCEEEecCc-hHHHHHHhcCCCEEEEe
Q 020516 200 AEIANGLREFR-PLFVIPHEKEREGVEDVVGDD-ASIVFITTPGQLAALINDSAGVIATNT-AAIQLANAREKPSIALF 275 (325)
Q Consensus 200 ~~l~~~l~~~~-~vvl~g~~~e~~~~~~i~~~~-~~~~~~~~~~el~ali~~a~l~I~~DT-Gp~HlAaAl~~P~iaLf 275 (325)
.+.+..+.+.. .++++.|+.+.+..++..+.. .++.+.....++..+++.||++|+.-. ..+.=|.++|+|+|+.-
T Consensus 201 ~~a~~~l~~~~~~~~~i~G~g~~~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad~~v~~sg~~t~~Eam~~G~Pvv~~~ 279 (350)
T cd03785 201 PEALAELLRKRLQVIHQTGKGDLEEVKKAYEELGVNYEVFPFIDDMAAAYAAADLVISRAGASTVAELAALGLPAILIP 279 (350)
T ss_pred HHHHHHhhccCeEEEEEcCCccHHHHHHHHhccCCCeEEeehhhhHHHHHHhcCEEEECCCHhHHHHHHHhCCCEEEee
Confidence 35555665333 445566666666555554433 233322223688999999999997432 34577999999999963
No 26
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=97.07 E-value=0.094 Score=48.19 Aligned_cols=103 Identities=16% Similarity=0.143 Sum_probs=62.2
Q ss_pred HHHcCCCCCCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCC---CEEEecCCCch-HHHHhH---HccC-
Q 020516 160 YKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR---PLFVIPHEKER-EGVEDV---VGDD- 231 (325)
Q Consensus 160 ~~~~~~~~~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~---~vvl~g~~~e~-~~~~~i---~~~~- 231 (325)
..+.+..+++.+++..|.-. +.-..+.+.+.+..+.+.. .++++|...+. ...+.+ ....
T Consensus 176 ~~~~~~~~~~~~i~~~Gr~~------------~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~ 243 (355)
T cd03819 176 AREWPLPKGKPVILLPGRLT------------RWKGQEVFIEALARLKKDDPDVHLLIVGDAQGRRFYYAELLELIKRLG 243 (355)
T ss_pred HHHcCCCCCceEEEEeeccc------------cccCHHHHHHHHHHHHhcCCCeEEEEEECCcccchHHHHHHHHHHHcC
Confidence 33444445555666655322 1135567888888887643 67777764332 232222 2221
Q ss_pred --CCcccccChHHHHHHHHhCCEEEecCc------hHHHHHHhcCCCEEEE
Q 020516 232 --ASIVFITTPGQLAALINDSAGVIATNT------AAIQLANAREKPSIAL 274 (325)
Q Consensus 232 --~~~~~~~~~~el~ali~~a~l~I~~DT------Gp~HlAaAl~~P~iaL 274 (325)
.++.+.....++..+++.||++|.+.+ -.+-=|.|+|+|+|+-
T Consensus 244 ~~~~v~~~g~~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~ 294 (355)
T cd03819 244 LQDRVTFVGHCSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIAS 294 (355)
T ss_pred CcceEEEcCCcccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEc
Confidence 233323334689999999999998762 2566689999999974
No 27
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=97.01 E-value=0.006 Score=56.62 Aligned_cols=257 Identities=12% Similarity=0.087 Sum_probs=125.6
Q ss_pred ChhHhhhCCCCEEEEEeccCchhh-hhhCCCCceEEEecC----CCCCCCchhHHHHHHHHHhcCCcEEEEecCCc--hH
Q 020516 1 MYLHITRYPGVLIDVIASARGKQT-FELNKNVRWANVYDL----DDDWPEPAEYTDILGVMKNRYYDMVLSTKLAG--LG 73 (325)
Q Consensus 1 ~~~Lk~~~P~a~I~~l~~~~~~~l-~~~~p~Vd~v~~~~~----~~~~~~~~~~~~l~~~Lr~~~yDl~i~~~~~~--~~ 73 (325)
+++||++||++++.=+..++.+.. ++-.=...++-..-. +.-.+-++...++++.+...+.|++|....-+ .+
T Consensus 21 ikaLk~~~~~~efvGvgG~~m~aeG~~sl~~~~elsvmGf~EVL~~lp~llk~~~~~~~~i~~~kpD~~i~IDsPdFnl~ 100 (381)
T COG0763 21 IKALKARYPDVEFVGVGGEKMEAEGLESLFDMEELSVMGFVEVLGRLPRLLKIRRELVRYILANKPDVLILIDSPDFNLR 100 (381)
T ss_pred HHHHHhhCCCeEEEEeccHHHHhccCccccCHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCchH
Confidence 478999999999999887655432 221111111100000 00000112233455667789999999664322 45
Q ss_pred HHHHHHHhCCCc-eeecccCCcccCCcc------cccceeccCCCcchhhhHHHHHHHHHHHcCCCCCCCCCCCCCCCee
Q 020516 74 HAAFLFMTTARD-RVSYIYPNVNAAGAG------LLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRSVPRHPVPPLRV 146 (325)
Q Consensus 74 ~~~~~~~~~a~~-rig~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ll~~lg~~~~~~~~~~~~~~~~ 146 (325)
.+-..+..|-.. .|=|..|++=.|+.. -+.++...+-+. .. .+.+..|.+..=+..+-.....+
T Consensus 101 vak~lrk~~p~i~iihYV~PsVWAWr~~Ra~~i~~~~D~lLailPF-----E~----~~y~k~g~~~~yVGHpl~d~i~~ 171 (381)
T COG0763 101 VAKKLRKAGPKIKIIHYVSPSVWAWRPKRAVKIAKYVDHLLAILPF-----EP----AFYDKFGLPCTYVGHPLADEIPL 171 (381)
T ss_pred HHHHHHHhCCCCCeEEEECcceeeechhhHHHHHHHhhHeeeecCC-----CH----HHHHhcCCCeEEeCChhhhhccc
Confidence 565666666222 233444442222111 011111111100 00 12233333200000000001111
Q ss_pred ecCHHHHHHHHHHHHHcCCC-CCCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCC---CEEEecCCCc-h
Q 020516 147 SISRRLKEVVAEKYKNAGAE-QGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR---PLFVIPHEKE-R 221 (325)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~-~~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~---~vvl~g~~~e-~ 221 (325)
.. +++. ..++++++ +++++++-|||+.+- . . .=.+-|.+.++.|.++. ++++-..+.. +
T Consensus 172 ~~---~r~~---ar~~l~~~~~~~~lalLPGSR~sE---I-----~--rl~~~f~~a~~~l~~~~~~~~~vlp~~~~~~~ 235 (381)
T COG0763 172 LP---DREA---AREKLGIDADEKTLALLPGSRRSE---I-----R--RLLPPFVQAAQELKARYPDLKFVLPLVNAKYR 235 (381)
T ss_pred cc---cHHH---HHHHhCCCCCCCeEEEecCCcHHH---H-----H--HHHHHHHHHHHHHHhhCCCceEEEecCcHHHH
Confidence 11 1111 34456666 567999999998764 1 1 23347889999998654 6666655554 3
Q ss_pred HHHHhHHccCC-CcccccChHHHHHHHHhCCEEEecCchHHHHHHhcCCCEEEEecCCCCCc
Q 020516 222 EGVEDVVGDDA-SIVFITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIALFSSELKGR 282 (325)
Q Consensus 222 ~~~~~i~~~~~-~~~~~~~~~el~ali~~a~l~I~~DTGp~HlAaAl~~P~iaLfg~t~p~~ 282 (325)
....+...... ....+...++.-..++.||+.+....=..==++..|+|+|+-|-...-..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aD~al~aSGT~tLE~aL~g~P~Vv~Yk~~~it~ 297 (381)
T COG0763 236 RIIEEALKWEVAGLSLILIDGEKRKAFAAADAALAASGTATLEAALAGTPMVVAYKVKPITY 297 (381)
T ss_pred HHHHHHhhccccCceEEecCchHHHHHHHhhHHHHhccHHHHHHHHhCCCEEEEEeccHHHH
Confidence 33333332111 12112223677778888998655433333335678999999998775443
No 28
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=96.99 E-value=0.041 Score=51.45 Aligned_cols=78 Identities=19% Similarity=0.144 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhhcC------C-CEEEecCCCchHHHHhHHccC--CC-cccccChHHHHHHHHhCCEEEecCc-----hH
Q 020516 196 IQVWAEIANGLREF------R-PLFVIPHEKEREGVEDVVGDD--AS-IVFITTPGQLAALINDSAGVIATNT-----AA 260 (325)
Q Consensus 196 ~e~~~~l~~~l~~~------~-~vvl~g~~~e~~~~~~i~~~~--~~-~~~~~~~~el~ali~~a~l~I~~DT-----Gp 260 (325)
.+.+.+.+..+.++ . .++++|...+.+..++..+.. .+ +.+.....++..+++.||++|.+.. ..
T Consensus 209 ~~~li~a~~~l~~~~~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~pS~~Eg~~~~ 288 (374)
T TIGR03088 209 QPTLVRAFALLVRQLPEGAERLRLVIVGDGPARGACEQMVRAAGLAHLVWLPGERDDVPALMQALDLFVLPSLAEGISNT 288 (374)
T ss_pred HHHHHHHHHHHHHhCcccccceEEEEecCCchHHHHHHHHHHcCCcceEEEcCCcCCHHHHHHhcCEEEeccccccCchH
Confidence 34555555554432 2 577777655555555554433 22 2212223578999999999996532 23
Q ss_pred HHHHHhcCCCEEE
Q 020516 261 IQLANAREKPSIA 273 (325)
Q Consensus 261 ~HlAaAl~~P~ia 273 (325)
+-=|-|.|+|+|+
T Consensus 289 ~lEAma~G~Pvv~ 301 (374)
T TIGR03088 289 ILEAMASGLPVIA 301 (374)
T ss_pred HHHHHHcCCCEEE
Confidence 4448999999998
No 29
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=96.89 E-value=0.22 Score=46.72 Aligned_cols=137 Identities=14% Similarity=0.054 Sum_probs=76.0
Q ss_pred CCCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCCCEEEecCCCchHHHHhHHccCCCcccccChHHHHHH
Q 020516 167 QGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFRPLFVIPHEKEREGVEDVVGDDASIVFITTPGQLAAL 246 (325)
Q Consensus 167 ~~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~~vvl~g~~~e~~~~~~i~~~~~~~~~~~~~~el~al 246 (325)
+.++|++..||.+.. -=-+-..++...+.++..++..+|+++.+.+.+............-..++.++
T Consensus 182 ~~~~ilV~GGS~Ga~------------~ln~~v~~~~~~l~~~~~v~~~~G~~~~~~~~~~~~~~~~~~v~~f~~dm~~~ 249 (357)
T COG0707 182 DKKTILVTGGSQGAK------------ALNDLVPEALAKLANRIQVIHQTGKNDLEELKSAYNELGVVRVLPFIDDMAAL 249 (357)
T ss_pred CCcEEEEECCcchhH------------HHHHHHHHHHHHhhhCeEEEEEcCcchHHHHHHHHhhcCcEEEeeHHhhHHHH
Confidence 456777766655431 11223333444444433677778887655544443332212212223689999
Q ss_pred HHhCCEEEecCc-hHHHHHHhcCCCEEEEecCCCCC-ccc--c-CCCCCCceeeeeCCCCCCCCCCHHHHHHHHHHHHH
Q 020516 247 INDSAGVIATNT-AAIQLANAREKPSIALFSSELKG-RLF--V-PNAEEKKCTVISSRTGKLIDTPVEAVLNAMQIFNE 320 (325)
Q Consensus 247 i~~a~l~I~~DT-Gp~HlAaAl~~P~iaLfg~t~p~-~~~--p-p~~~~~~~~~~~~~~~~m~~I~~~~V~~~~~~~~~ 320 (325)
++.|||+||=-. ..+==++++|+|+|-+--|.-.+ ... . .+....-+.++.. .+++++++.+.+.++..
T Consensus 250 ~~~ADLvIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~gaa~~i~~-----~~lt~~~l~~~i~~l~~ 323 (357)
T COG0707 250 LAAADLVISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKAGAALVIRQ-----SELTPEKLAELILRLLS 323 (357)
T ss_pred HHhccEEEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhCCCEEEecc-----ccCCHHHHHHHHHHHhc
Confidence 999999999866 34445599999999775443311 100 0 0000011223322 35889999998888764
No 30
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=96.87 E-value=0.044 Score=51.77 Aligned_cols=35 Identities=17% Similarity=0.111 Sum_probs=28.0
Q ss_pred HHHHHHHHhCCEEEecCc-hHHHHHHhcCCCEEEEe
Q 020516 241 GQLAALINDSAGVIATNT-AAIQLANAREKPSIALF 275 (325)
Q Consensus 241 ~el~ali~~a~l~I~~DT-Gp~HlAaAl~~P~iaLf 275 (325)
.++..+++.||++|+.-. +.+-=|.|.|+|+|+.-
T Consensus 274 ~~~~~l~~aaDv~V~~~g~~ti~EAma~g~PvI~~~ 309 (382)
T PLN02605 274 TNMEEWMGACDCIITKAGPGTIAEALIRGLPIILNG 309 (382)
T ss_pred ccHHHHHHhCCEEEECCCcchHHHHHHcCCCEEEec
Confidence 479999999999998433 33466899999999953
No 31
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=96.87 E-value=0.043 Score=51.38 Aligned_cols=81 Identities=15% Similarity=0.127 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhhcCC---CEEEecCCCch--HHHHhHHccCCCcccccCh--HHHHHHHHhCCEEEecCchHHHHHHhcC
Q 020516 196 IQVWAEIANGLREFR---PLFVIPHEKER--EGVEDVVGDDASIVFITTP--GQLAALINDSAGVIATNTAAIQLANARE 268 (325)
Q Consensus 196 ~e~~~~l~~~l~~~~---~vvl~g~~~e~--~~~~~i~~~~~~~~~~~~~--~el~ali~~a~l~I~~DTGp~HlAaAl~ 268 (325)
.+...+.++.+.++. .+++.+++... +...+......++.++... .++..+++.||++|++-+|..-=|.++|
T Consensus 214 ~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ad~vv~~Sg~~~~EA~a~g 293 (365)
T TIGR00236 214 LENIFKAIREIVEEFEDVQIVYPVHLNPVVREPLHKHLGDSKRVHLIEPLEYLDFLNLAANSHLILTDSGGVQEEAPSLG 293 (365)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCChHHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhCCEEEECChhHHHHHHHcC
Confidence 455666555654332 56666665322 2122212222333323222 4678999999999997667666699999
Q ss_pred CCEEEEec
Q 020516 269 KPSIALFS 276 (325)
Q Consensus 269 ~P~iaLfg 276 (325)
+|+|++..
T Consensus 294 ~PvI~~~~ 301 (365)
T TIGR00236 294 KPVLVLRD 301 (365)
T ss_pred CCEEECCC
Confidence 99999853
No 32
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=96.52 E-value=0.5 Score=42.44 Aligned_cols=80 Identities=14% Similarity=0.126 Sum_probs=53.6
Q ss_pred CHHHHHHHHHHhhcCC---CEEEecCCCchHHHHhHHccCC---CcccccChHHHHHHHHhCCEEEecC-----chHHHH
Q 020516 195 PIQVWAEIANGLREFR---PLFVIPHEKEREGVEDVVGDDA---SIVFITTPGQLAALINDSAGVIATN-----TAAIQL 263 (325)
Q Consensus 195 p~e~~~~l~~~l~~~~---~vvl~g~~~e~~~~~~i~~~~~---~~~~~~~~~el~ali~~a~l~I~~D-----TGp~Hl 263 (325)
..+.+.+.++.+.+++ .++++|...+.+..++...... ++.......++..+++.||++|.+- +..+-=
T Consensus 203 ~~~~~i~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~i~ps~~e~~~~~~~E 282 (353)
T cd03811 203 GFDTLIRAFALLRKEGPDARLVILGDGPLREELEALAKELGLADRVHFLGFQSNPYPYLKAADLFVLSSRYEGFPNVLLE 282 (353)
T ss_pred ChHHHHHHHHHhhhcCCCceEEEEcCCccHHHHHHHHHhcCCCccEEEecccCCHHHHHHhCCEEEeCcccCCCCcHHHH
Confidence 4567888888887652 7788887666555555544332 2222222356788999999999764 345667
Q ss_pred HHhcCCCEEEE
Q 020516 264 ANAREKPSIAL 274 (325)
Q Consensus 264 AaAl~~P~iaL 274 (325)
|.+.|+|+|+-
T Consensus 283 a~~~G~PvI~~ 293 (353)
T cd03811 283 AMALGTPVVAT 293 (353)
T ss_pred HHHhCCCEEEc
Confidence 89999999983
No 33
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.42 E-value=0.08 Score=47.86 Aligned_cols=199 Identities=16% Similarity=0.170 Sum_probs=106.2
Q ss_pred HHHHHHHHhcCCcEEEEecCCchHHHHHHHHhCCCceeecccCCcccCCcccccceeccCCCcchhhhHHHHHHHHHHHc
Q 020516 50 TDILGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWL 129 (325)
Q Consensus 50 ~~l~~~Lr~~~yDl~i~~~~~~~~~~~~~~~~~a~~rig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l 129 (325)
..|.+..++.+.|+.+- ..+ +..+-++|..|++. |++....+.... -.++. ++-..-...-.++ ...+..+
T Consensus 74 ~~L~ki~~~~kpdv~i~-~~s-~~l~rvafgLg~ps-Ii~~D~ehA~~q--nkl~~--Pla~~ii~P~~~~--~~~~~~~ 144 (346)
T COG1817 74 YKLSKIIAEFKPDVAIG-KHS-PELPRVAFGLGIPS-IIFVDNEHAEAQ--NKLTL--PLADVIITPEAID--EEELLDF 144 (346)
T ss_pred HHHHHHHhhcCCceEee-cCC-cchhhHHhhcCCce-EEecCChhHHHH--hhcch--hhhhheecccccc--hHHHHHh
Confidence 34666778899999998 445 77778888888874 556543332211 11111 1111100011122 1233445
Q ss_pred CCCCCCC---CC--CCCCCCeeecCHHHHHHHHHHHHHcCCCC-CCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHH
Q 020516 130 GRPFRSV---PR--HPVPPLRVSISRRLKEVVAEKYKNAGAEQ-GKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIA 203 (325)
Q Consensus 130 g~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~ 203 (325)
|.+-..+ .. ...+-..+.+.++ .++++|+.. .+||++-|-+..+. +. .| + -..+.-..++
T Consensus 145 G~~p~~i~~~~giae~~~v~~f~pd~e-------vlkeLgl~~~~~yIVmRpe~~~A~-y~--~g--~--~~~~~~~~li 210 (346)
T COG1817 145 GADPNKISGYNGIAELANVYGFVPDPE-------VLKELGLEEGETYIVMRPEPWGAH-YD--NG--D--RGISVLPDLI 210 (346)
T ss_pred CCCccceecccceeEEeecccCCCCHH-------HHHHcCCCCCCceEEEeeccccce-ee--cc--c--cchhhHHHHH
Confidence 5431111 00 0111112233333 456788885 57999888654432 11 10 0 2234467788
Q ss_pred HHhhcCCCEEEecCCCchHHHHhHHccCCCcccccChHHHHHHHHhCCEEEecCchHHH-HHHhcCCCEEEEec
Q 020516 204 NGLREFRPLFVIPHEKEREGVEDVVGDDASIVFITTPGQLAALINDSAGVIATNTAAIQ-LANAREKPSIALFS 276 (325)
Q Consensus 204 ~~l~~~~~vvl~g~~~e~~~~~~i~~~~~~~~~~~~~~el~ali~~a~l~I~~DTGp~H-lAaAl~~P~iaLfg 276 (325)
+.|.+.+ +|++..++ ++.+.+ ..+-+.+......+...|+-.|+++||. +|.|- =||.+|||.|.-|.
T Consensus 211 ~~l~k~g-iV~ipr~~--~~~eif-e~~~n~i~pk~~vD~l~Llyya~lvig~-ggTMarEaAlLGtpaIs~~p 279 (346)
T COG1817 211 KELKKYG-IVLIPREK--EQAEIF-EGYRNIIIPKKAVDTLSLLYYATLVIGA-GGTMAREAALLGTPAISCYP 279 (346)
T ss_pred HHHHhCc-EEEecCch--hHHHHH-hhhccccCCcccccHHHHHhhhheeecC-CchHHHHHHHhCCceEEecC
Confidence 8887777 77775544 333323 3232221011124566799999999985 55554 57999999999993
No 34
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=96.33 E-value=0.079 Score=50.22 Aligned_cols=148 Identities=11% Similarity=0.086 Sum_probs=79.0
Q ss_pred HHcCCC-CCCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCC---CEEEecC-CCchHHHHhHHccCC-Cc
Q 020516 161 KNAGAE-QGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR---PLFVIPH-EKEREGVEDVVGDDA-SI 234 (325)
Q Consensus 161 ~~~~~~-~~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~---~vvl~g~-~~e~~~~~~i~~~~~-~~ 234 (325)
++++++ +++.|++.|||.... . .| -...+.+.++.+.+.. .+++.++ ....+..+++.+... +.
T Consensus 183 ~~lgl~~~~~~Ilvl~GSR~ae---i-----~k--~~~~ll~a~~~l~~~~p~~~~vi~~~~~~~~~~~~~~~~~~~~~~ 252 (385)
T TIGR00215 183 EKLGIDHNGETLALLPGSRGSE---V-----EK--LFPLFLKAAQLLEQQEPDLRRVLPVVNFKRRLQFEQIKAEYGPDL 252 (385)
T ss_pred HHcCCCCCCCEEEEECCCCHHH---H-----HH--hHHHHHHHHHHHHHhCCCeEEEEEeCCchhHHHHHHHHHHhCCCC
Confidence 345665 345677778776532 0 11 2235666667776543 3444333 333444455443321 11
Q ss_pred ccccChHHHHHHHHhCCEEEecCchHHHHHHhcCCCEEEEecCCCCCcccc------CCCCCCceeeeeCCC---CC-CC
Q 020516 235 VFITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIALFSSELKGRLFV------PNAEEKKCTVISSRT---GK-LI 304 (325)
Q Consensus 235 ~~~~~~~el~ali~~a~l~I~~DTGp~HlAaAl~~P~iaLfg~t~p~~~~p------p~~~~~~~~~~~~~~---~~-m~ 304 (325)
.......+...+++.||++|+.-+..+==|+++|+|+|..|..+.-.++.- ++.+. ..++.... .. -.
T Consensus 253 ~v~~~~~~~~~~l~aADl~V~~SGt~tlEa~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~--~nil~~~~~~pel~q~ 330 (385)
T TIGR00215 253 QLHLIDGDARKAMFAADAALLASGTAALEAALIKTPMVVGYRMKPLTFLIARRLVKTDYISL--PNILANRLLVPELLQE 330 (385)
T ss_pred cEEEECchHHHHHHhCCEEeecCCHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeec--cHHhcCCccchhhcCC
Confidence 111112456779999999999754443389999999999998653222111 01000 00111111 11 25
Q ss_pred CCCHHHHHHHHHHHHH
Q 020516 305 DTPVEAVLNAMQIFNE 320 (325)
Q Consensus 305 ~I~~~~V~~~~~~~~~ 320 (325)
+.+|+.+.+++.++..
T Consensus 331 ~~~~~~l~~~~~~ll~ 346 (385)
T TIGR00215 331 ECTPHPLAIALLLLLE 346 (385)
T ss_pred CCCHHHHHHHHHHHhc
Confidence 6789999988888764
No 35
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=96.33 E-value=0.74 Score=41.27 Aligned_cols=80 Identities=14% Similarity=0.186 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHhhcCC---CEEEecCCCchHHHHhHHccCC---CcccccChHHHHHHHHhCCEEEecC-----chHHHH
Q 020516 195 PIQVWAEIANGLREFR---PLFVIPHEKEREGVEDVVGDDA---SIVFITTPGQLAALINDSAGVIATN-----TAAIQL 263 (325)
Q Consensus 195 p~e~~~~l~~~l~~~~---~vvl~g~~~e~~~~~~i~~~~~---~~~~~~~~~el~ali~~a~l~I~~D-----TGp~Hl 263 (325)
..+.+.+.++.+.+.. .++++|...+.+..++..+... ++.+.....++..++++||++|.+. +..+.=
T Consensus 192 ~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~i~ps~~e~~~~~~~E 271 (348)
T cd03820 192 GFDLLIEAWAKIAKKHPDWKLRIVGDGPEREALEALIKELGLEDRVILLGFTKNIEEYYAKASIFVLTSRFEGFPMVLLE 271 (348)
T ss_pred CHHHHHHHHHHHHhcCCCeEEEEEeCCCCHHHHHHHHHHcCCCCeEEEcCCcchHHHHHHhCCEEEeCccccccCHHHHH
Confidence 4567778877776443 6777887767666665544332 2221222368999999999999887 567888
Q ss_pred HHhcCCCEEEE
Q 020516 264 ANAREKPSIAL 274 (325)
Q Consensus 264 AaAl~~P~iaL 274 (325)
|.+.|+|+|+-
T Consensus 272 a~a~G~Pvi~~ 282 (348)
T cd03820 272 AMAFGLPVISF 282 (348)
T ss_pred HHHcCCCEEEe
Confidence 99999999974
No 36
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=96.20 E-value=0.42 Score=44.43 Aligned_cols=36 Identities=19% Similarity=0.145 Sum_probs=29.6
Q ss_pred HHHHHHHHhCCEEEecCc-hHHHHHHhcCCCEEEEec
Q 020516 241 GQLAALINDSAGVIATNT-AAIQLANAREKPSIALFS 276 (325)
Q Consensus 241 ~el~ali~~a~l~I~~DT-Gp~HlAaAl~~P~iaLfg 276 (325)
.+...+++.||++|+.-. +.+.=|.++|+|+|++-.
T Consensus 244 ~~~~~~~~~~d~~i~~~g~~~~~Ea~~~g~Pvv~~~~ 280 (357)
T PRK00726 244 DDMAAAYAAADLVICRAGASTVAELAAAGLPAILVPL 280 (357)
T ss_pred hhHHHHHHhCCEEEECCCHHHHHHHHHhCCCEEEecC
Confidence 578999999999998533 356678999999999854
No 37
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=96.13 E-value=0.54 Score=43.15 Aligned_cols=135 Identities=13% Similarity=0.143 Sum_probs=77.7
Q ss_pred cCCCCCCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCC---CEEEecCCCchHHHHhHHccC---CCccc
Q 020516 163 AGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR---PLFVIPHEKEREGVEDVVGDD---ASIVF 236 (325)
Q Consensus 163 ~~~~~~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~---~vvl~g~~~e~~~~~~i~~~~---~~~~~ 236 (325)
.+...++++++..|.-.. . =..+.+.+.+..+.+++ .++++|+..+.+..++..... .++.+
T Consensus 186 ~~~~~~~~~i~~vGr~~~----------~--Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~ 253 (358)
T cd03812 186 LGILEDKFVIGHVGRFSE----------Q--KNHEFLIEIFAELLKKNPNAKLLLVGDGELEEEIKKKVKELGLEDKVIF 253 (358)
T ss_pred cCCCCCCEEEEEEecccc----------c--cChHHHHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCCCcEEE
Confidence 344455666666554321 1 24567888888887653 677887655555554444322 12222
Q ss_pred ccChHHHHHHHHhCCEEEecC-----chHHHHHHhcCCCEEEEecCCCCCccccCCCCCCceeeeeCCCCCCCCCCHHHH
Q 020516 237 ITTPGQLAALINDSAGVIATN-----TAAIQLANAREKPSIALFSSELKGRLFVPNAEEKKCTVISSRTGKLIDTPVEAV 311 (325)
Q Consensus 237 ~~~~~el~ali~~a~l~I~~D-----TGp~HlAaAl~~P~iaLfg~t~p~~~~pp~~~~~~~~~~~~~~~~m~~I~~~~V 311 (325)
.....++..+++.||++|.+. +..+==|-|.|+|+|+--.+..+... . . .+..+ ...=+++++
T Consensus 254 ~g~~~~~~~~~~~adi~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~~~~~i-~----~-~~~~~------~~~~~~~~~ 321 (358)
T cd03812 254 LGVRNDVPELLQAMDVFLFPSLYEGLPLVLIEAQASGLPCILSDTITKEVDL-T----D-LVKFL------SLDESPEIW 321 (358)
T ss_pred ecccCCHHHHHHhcCEEEecccccCCCHHHHHHHHhCCCEEEEcCCchhhhh-c----c-CccEE------eCCCCHHHH
Confidence 222357899999999999764 23345578999999985443332211 1 1 11111 122347888
Q ss_pred HHHHHHHHHh
Q 020516 312 LNAMQIFNES 321 (325)
Q Consensus 312 ~~~~~~~~~~ 321 (325)
.+++.++..+
T Consensus 322 a~~i~~l~~~ 331 (358)
T cd03812 322 AEEILKLKSE 331 (358)
T ss_pred HHHHHHHHhC
Confidence 8888887543
No 38
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=96.06 E-value=0.017 Score=53.94 Aligned_cols=114 Identities=14% Similarity=0.161 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhhcC-C-CEEEecCCCc--hHHHHhHHccCCCcccccCh--HHHHHHHHhCCEEEecCchHHHHHHhcCC
Q 020516 196 IQVWAEIANGLREF-R-PLFVIPHEKE--REGVEDVVGDDASIVFITTP--GQLAALINDSAGVIATNTAAIQLANAREK 269 (325)
Q Consensus 196 ~e~~~~l~~~l~~~-~-~vvl~g~~~e--~~~~~~i~~~~~~~~~~~~~--~el~ali~~a~l~I~~DTGp~HlAaAl~~ 269 (325)
.+.+.++++.|.+. . ++|+..++.+ .+.+.+....++++..+... .++.+++++|+++||+-||..==|..+|+
T Consensus 199 ~~~i~~~l~~L~~~~~~~vi~~~hn~p~~~~~i~~~l~~~~~v~~~~~l~~~~~l~ll~~a~~vvgdSsGI~eEa~~lg~ 278 (346)
T PF02350_consen 199 LEQILEALKALAERQNVPVIFPLHNNPRGSDIIIEKLKKYDNVRLIEPLGYEEYLSLLKNADLVVGDSSGIQEEAPSLGK 278 (346)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEE--S-HHHHHHHHHHHTT-TTEEEE----HHHHHHHHHHESEEEESSHHHHHHGGGGT-
T ss_pred HHHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHhcccCCEEEECCCCHHHHHHHHhcceEEEEcCccHHHHHHHhCC
Confidence 56777778888776 3 7888877444 34444444444555433333 68999999999999998866669999999
Q ss_pred CEEEEecCCCCCccccCCCCCCceeeeeCCCCCCCCCCHHHHHHHHHHHHHh
Q 020516 270 PSIALFSSELKGRLFVPNAEEKKCTVISSRTGKLIDTPVEAVLNAMQIFNES 321 (325)
Q Consensus 270 P~iaLfg~t~p~~~~pp~~~~~~~~~~~~~~~~m~~I~~~~V~~~~~~~~~~ 321 (325)
|+|.+=-.++-....- . +. +.+ + ..++++|.+++.+....
T Consensus 279 P~v~iR~~geRqe~r~-~-~~-nvl-v--------~~~~~~I~~ai~~~l~~ 318 (346)
T PF02350_consen 279 PVVNIRDSGERQEGRE-R-GS-NVL-V--------GTDPEAIIQAIEKALSD 318 (346)
T ss_dssp -EEECSSS-S-HHHHH-T-TS-EEE-E--------TSSHHHHHHHHHHHHH-
T ss_pred eEEEecCCCCCHHHHh-h-cc-eEE-e--------CCCHHHHHHHHHHHHhC
Confidence 9999922222111101 1 11 222 2 45788999999887653
No 39
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=96.03 E-value=0.7 Score=41.83 Aligned_cols=81 Identities=17% Similarity=0.173 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHHhhcCC---CEEEecCCCchHHHHhHHccC---CCccccc--ChHHHHHHHHhCCEEEecC-----chH
Q 020516 194 LPIQVWAEIANGLREFR---PLFVIPHEKEREGVEDVVGDD---ASIVFIT--TPGQLAALINDSAGVIATN-----TAA 260 (325)
Q Consensus 194 wp~e~~~~l~~~l~~~~---~vvl~g~~~e~~~~~~i~~~~---~~~~~~~--~~~el~ali~~a~l~I~~D-----TGp 260 (325)
-..+.+.+.++.+.+++ .+++.|...+.+..++..+.. .++.... +..++..++++||++|.+- ++.
T Consensus 215 k~~~~li~~~~~~~~~~~~~~l~i~g~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~~~~~~~~~~~ 294 (377)
T cd03798 215 KGIDYLIEALARLLKKRPDVHLVIVGDGPLREALEALAAELGLEDRVTFLGAVPHEEVPAYYAAADVFVLPSLREGFGLV 294 (377)
T ss_pred cCHHHHHHHHHHHHhcCCCeEEEEEcCCcchHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhcCeeecchhhccCChH
Confidence 35677888888887653 667777666666555554322 2332121 2368999999999999654 456
Q ss_pred HHHHHhcCCCEEEE
Q 020516 261 IQLANAREKPSIAL 274 (325)
Q Consensus 261 ~HlAaAl~~P~iaL 274 (325)
+.=|.+.|+|+|+-
T Consensus 295 ~~Ea~~~G~pvI~~ 308 (377)
T cd03798 295 LLEAMACGLPVVAT 308 (377)
T ss_pred HHHHHhcCCCEEEe
Confidence 78899999999973
No 40
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=95.89 E-value=0.46 Score=42.88 Aligned_cols=80 Identities=16% Similarity=0.165 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHhhcCC---CEEEecCCCchHHHHh--HHcc--CCCcccccChHHHHHHHHhCCEEEecC-----chHHH
Q 020516 195 PIQVWAEIANGLREFR---PLFVIPHEKEREGVED--VVGD--DASIVFITTPGQLAALINDSAGVIATN-----TAAIQ 262 (325)
Q Consensus 195 p~e~~~~l~~~l~~~~---~vvl~g~~~e~~~~~~--i~~~--~~~~~~~~~~~el~ali~~a~l~I~~D-----TGp~H 262 (325)
..+.+.+.+..+.+.+ .++++|+..+.+.... +... ..++.+.....++..+++.||++|.+. ++.+-
T Consensus 202 ~~~~li~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~i~ps~~e~~~~~~~ 281 (359)
T cd03808 202 GIDELLEAARILKAKGPNVRLLLVGDGDEENPAAILEIEKLGLEGRVEFLGFRDDVPELLAAADVFVLPSYREGLPRVLL 281 (359)
T ss_pred CHHHHHHHHHHHHhcCCCeEEEEEcCCCcchhhHHHHHHhcCCcceEEEeeccccHHHHHHhccEEEecCcccCcchHHH
Confidence 4677888888876533 6777777554443332 2221 122332222468999999999999876 45667
Q ss_pred HHHhcCCCEEEE
Q 020516 263 LANAREKPSIAL 274 (325)
Q Consensus 263 lAaAl~~P~iaL 274 (325)
=|.+.|+|+|+-
T Consensus 282 Ea~~~G~Pvi~s 293 (359)
T cd03808 282 EAMAMGRPVIAT 293 (359)
T ss_pred HHHHcCCCEEEe
Confidence 789999999983
No 41
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=95.54 E-value=0.58 Score=42.68 Aligned_cols=73 Identities=18% Similarity=0.142 Sum_probs=49.7
Q ss_pred HHHHHHHHhCCEEEecCchH-HHHHHhcCCCEEEEecCCCCCccccCCC-C-CCceeeeeCCCCCCCCCCHHHHHHHHHH
Q 020516 241 GQLAALINDSAGVIATNTAA-IQLANAREKPSIALFSSELKGRLFVPNA-E-EKKCTVISSRTGKLIDTPVEAVLNAMQI 317 (325)
Q Consensus 241 ~el~ali~~a~l~I~~DTGp-~HlAaAl~~P~iaLfg~t~p~~~~pp~~-~-~~~~~~~~~~~~~m~~I~~~~V~~~~~~ 317 (325)
..+..+|+.||++||.-.-. +.=|.++|+|++.+--+...+...--.. . -+-...+ ..++++++.+.+.+++
T Consensus 242 ~~~~~~m~~ad~vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~-----~~~~~~~~~l~~~l~~ 316 (318)
T PF13528_consen 242 PDFAELMAAADLVISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVL-----SQEDLTPERLAEFLER 316 (318)
T ss_pred HHHHHHHHhCCEEEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEc-----ccccCCHHHHHHHHhc
Confidence 68899999999999997766 8889999999999987654332110000 0 0011122 2568899999888876
Q ss_pred H
Q 020516 318 F 318 (325)
Q Consensus 318 ~ 318 (325)
+
T Consensus 317 ~ 317 (318)
T PF13528_consen 317 L 317 (318)
T ss_pred C
Confidence 4
No 42
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=94.72 E-value=1.5 Score=41.32 Aligned_cols=61 Identities=10% Similarity=0.110 Sum_probs=40.5
Q ss_pred CCchHHHHhHHccCCCcc-cccC--h--HHHHHHHHhCCEEEecCchHHHHHHhcCCCEEEEecCC
Q 020516 218 EKEREGVEDVVGDDASIV-FITT--P--GQLAALINDSAGVIATNTAAIQLANAREKPSIALFSSE 278 (325)
Q Consensus 218 ~~e~~~~~~i~~~~~~~~-~~~~--~--~el~ali~~a~l~I~~DTGp~HlAaAl~~P~iaLfg~t 278 (325)
.+|...++.+...+++.. +... + .++...+++|+++||.===..=+|.++|+|+|+|.-..
T Consensus 249 s~d~~va~~ia~~~~~~~~i~~~~d~~~~~~~~~l~~~dl~Vg~R~HsaI~al~~g~p~i~i~Y~~ 314 (385)
T COG2327 249 SDDLAVADAIAQLVLDSAEILVSSDEYAEELGGILAACDLIVGMRLHSAIMALAFGVPAIAIAYDP 314 (385)
T ss_pred cchhHHHHHHHhhcCCccceEeecchHHHHHHHHhccCceEEeehhHHHHHHHhcCCCeEEEeecH
Confidence 345555666655554221 1111 1 45677999999999876555557899999999997654
No 43
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=94.61 E-value=0.2 Score=45.50 Aligned_cols=78 Identities=18% Similarity=0.162 Sum_probs=55.4
Q ss_pred HHHHHHHHHhhcC-C-CEEEecC--CCchHHHHhHHccCCC---cccccChHHHHHHHHhCCEEEecCchHHHHHHhcCC
Q 020516 197 QVWAEIANGLREF-R-PLFVIPH--EKEREGVEDVVGDDAS---IVFITTPGQLAALINDSAGVIATNTAAIQLANAREK 269 (325)
Q Consensus 197 e~~~~l~~~l~~~-~-~vvl~g~--~~e~~~~~~i~~~~~~---~~~~~~~~el~ali~~a~l~I~~DTGp~HlAaAl~~ 269 (325)
+.+++.++.+.++ + .++++.. +.|.+.++++...+++ +....++.|+.++|++|+++||.===.+=+|...|+
T Consensus 191 ~~l~~~l~~l~~~~g~~v~~i~~~~~~D~~~~~~l~~~~~~~~~i~~~~~~~e~~~~i~~~~~vI~~RlH~~I~A~~~gv 270 (298)
T TIGR03609 191 LRLLRALDRLQRDTGAFVLFLPFQQPQDLPLARALRDQLLGPAEVLSPLDPEELLGLFASARLVIGMRLHALILAAAAGV 270 (298)
T ss_pred HHHHHHHHHHHHhhCCeEEEEeCCcchhHHHHHHHHHhcCCCcEEEecCCHHHHHHHHhhCCEEEEechHHHHHHHHcCC
Confidence 3555666666655 4 6666653 5777777887766532 111235589999999999999986555558899999
Q ss_pred CEEEE
Q 020516 270 PSIAL 274 (325)
Q Consensus 270 P~iaL 274 (325)
|+|++
T Consensus 271 P~i~i 275 (298)
T TIGR03609 271 PFVAL 275 (298)
T ss_pred CEEEe
Confidence 99999
No 44
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=94.53 E-value=0.46 Score=44.89 Aligned_cols=132 Identities=8% Similarity=-0.005 Sum_probs=74.2
Q ss_pred CCCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCC-CEEEecCCC-chHHHHhHHccCCCcccccChHHHH
Q 020516 167 QGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFVIPHEK-EREGVEDVVGDDASIVFITTPGQLA 244 (325)
Q Consensus 167 ~~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~-~vvl~g~~~-e~~~~~~i~~~~~~~~~~~~~~el~ 244 (325)
.++.|.+..|+... +..+.+.++++.+.+.. .+++..|.. +.+..+++ ..++.......+ .
T Consensus 224 ~~~~v~vs~Gs~~~-------------~~~~~~~~~~~al~~~~~~~i~~~g~~~~~~~~~~~---~~~v~~~~~~p~-~ 286 (392)
T TIGR01426 224 GRPVVLISLGTVFN-------------NQPSFYRTCVEAFRDLDWHVVLSVGRGVDPADLGEL---PPNVEVRQWVPQ-L 286 (392)
T ss_pred CCCEEEEecCccCC-------------CCHHHHHHHHHHHhcCCCeEEEEECCCCChhHhccC---CCCeEEeCCCCH-H
Confidence 35567776665431 33457777888887666 566554443 33222221 123321111122 4
Q ss_pred HHHHhCCEEEecCc-hHHHHHHhcCCCEEEEecCCCCCccccCCCCCCceeeeeCCCCCCCCCCHHHHHHHHHHHHH
Q 020516 245 ALINDSAGVIATNT-AAIQLANAREKPSIALFSSELKGRLFVPNAEEKKCTVISSRTGKLIDTPVEAVLNAMQIFNE 320 (325)
Q Consensus 245 ali~~a~l~I~~DT-Gp~HlAaAl~~P~iaLfg~t~p~~~~pp~~~~~~~~~~~~~~~~m~~I~~~~V~~~~~~~~~ 320 (325)
.++++||++|+.-+ |.++=|.+.|+|+|++....+...+.--....+-...+. -.+++++++.+++.++..
T Consensus 287 ~ll~~~~~~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~g~g~~l~-----~~~~~~~~l~~ai~~~l~ 358 (392)
T TIGR01426 287 EILKKADAFITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAELGLGRHLP-----PEEVTAEKLREAVLAVLS 358 (392)
T ss_pred HHHhhCCEEEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHHCCCEEEec-----cccCCHHHHHHHHHHHhc
Confidence 78999999999887 569999999999999976543221110000000111111 236778888888877643
No 45
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=94.48 E-value=2 Score=42.58 Aligned_cols=81 Identities=11% Similarity=0.148 Sum_probs=49.8
Q ss_pred HHHHHHHHHhhcCC---CEEEecCCCchHHHHhHHccC---CCcccccChHHHHHHHHhCCEEEec---CchH--HHHHH
Q 020516 197 QVWAEIANGLREFR---PLFVIPHEKEREGVEDVVGDD---ASIVFITTPGQLAALINDSAGVIAT---NTAA--IQLAN 265 (325)
Q Consensus 197 e~~~~l~~~l~~~~---~vvl~g~~~e~~~~~~i~~~~---~~~~~~~~~~el~ali~~a~l~I~~---DTGp--~HlAa 265 (325)
..+.+.+..+.++. .++++|...+++.+++..+.. .++.+.....++..+++.||++|.+ ++-| +==|-
T Consensus 414 ~~LI~A~a~llk~~pdirLvIVGdG~~~eeLk~la~elgL~d~V~FlG~~~Dv~~~LaaADVfVlPS~~EGfp~vlLEAM 493 (578)
T PRK15490 414 FAWIDFAARYLQHHPATRFVLVGDGDLRAEAQKRAEQLGILERILFVGASRDVGYWLQKMNVFILFSRYEGLPNVLIEAQ 493 (578)
T ss_pred HHHHHHHHHHHhHCCCeEEEEEeCchhHHHHHHHHHHcCCCCcEEECCChhhHHHHHHhCCEEEEcccccCccHHHHHHH
Confidence 34555444443332 677888766666666555433 2333333346788999999999964 3323 33368
Q ss_pred hcCCCEEEEecC
Q 020516 266 AREKPSIALFSS 277 (325)
Q Consensus 266 Al~~P~iaLfg~ 277 (325)
|.|+|+|+--..
T Consensus 494 A~GlPVVATdvG 505 (578)
T PRK15490 494 MVGVPVISTPAG 505 (578)
T ss_pred HhCCCEEEeCCC
Confidence 999999975443
No 46
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=94.37 E-value=3.2 Score=38.13 Aligned_cols=37 Identities=24% Similarity=0.237 Sum_probs=30.9
Q ss_pred HHHHHHHHhCCEEEecCc-hHHHHHHhcCCCEEEEecC
Q 020516 241 GQLAALINDSAGVIATNT-AAIQLANAREKPSIALFSS 277 (325)
Q Consensus 241 ~el~ali~~a~l~I~~DT-Gp~HlAaAl~~P~iaLfg~ 277 (325)
.++.++++.||++||.-. +.+.=|.++|+|+|.+=-+
T Consensus 239 ~~~~~~l~~ad~vI~~~G~~t~~Ea~~~g~P~l~ip~~ 276 (321)
T TIGR00661 239 DNFKELIKNAELVITHGGFSLISEALSLGKPLIVIPDL 276 (321)
T ss_pred HHHHHHHHhCCEEEECCChHHHHHHHHcCCCEEEEcCC
Confidence 579999999999999976 4567789999999986443
No 47
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=94.20 E-value=1.3 Score=40.79 Aligned_cols=73 Identities=21% Similarity=0.175 Sum_probs=46.8
Q ss_pred HHHHHhhcCC-CEEEecCCCchHHHHhHHccCC--CcccccChHHHHHHHHhCCEEEecCchH--HHHHHhcCCCEEEEe
Q 020516 201 EIANGLREFR-PLFVIPHEKEREGVEDVVGDDA--SIVFITTPGQLAALINDSAGVIATNTAA--IQLANAREKPSIALF 275 (325)
Q Consensus 201 ~l~~~l~~~~-~vvl~g~~~e~~~~~~i~~~~~--~~~~~~~~~el~ali~~a~l~I~~DTGp--~HlAaAl~~P~iaLf 275 (325)
+.++.+.+.. .+++++|..+.+.+++..+... +..... ..++..+++.||++|+. +|+ +.=|.+.|+|+|+.-
T Consensus 200 ~a~~~l~~~~~~~~~~~g~~~~~~l~~~~~~~~l~~~v~~~-~~~~~~~l~~ad~~v~~-~g~~~l~Ea~~~g~Pvv~~~ 277 (348)
T TIGR01133 200 KALAKLAEKGIQIVHQTGKNDLEKVKNVYQELGIEAIVTFI-DENMAAAYAAADLVISR-AGASTVAELAAAGVPAILIP 277 (348)
T ss_pred HHHHHHhhcCcEEEEECCcchHHHHHHHHhhCCceEEecCc-ccCHHHHHHhCCEEEEC-CChhHHHHHHHcCCCEEEee
Confidence 4445554444 5556677666655555444332 222122 13789999999999986 564 566899999999974
No 48
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=94.12 E-value=5.2 Score=37.61 Aligned_cols=85 Identities=15% Similarity=0.132 Sum_probs=54.6
Q ss_pred CCHHHHHHHHH---HhhcCC---CEEEecCCC--chHHHHhHHccCCCcccccCh--HHHHHHHHhCCEEEecCchHHHH
Q 020516 194 LPIQVWAEIAN---GLREFR---PLFVIPHEK--EREGVEDVVGDDASIVFITTP--GQLAALINDSAGVIATNTAAIQL 263 (325)
Q Consensus 194 wp~e~~~~l~~---~l~~~~---~vvl~g~~~--e~~~~~~i~~~~~~~~~~~~~--~el~ali~~a~l~I~~DTGp~Hl 263 (325)
|. +.+.++++ .+.+++ .++.--++. .++.........+++..+... -++..|+++|-+++|..+|.-==
T Consensus 217 ~~-~~~~~i~~al~~i~~~~~~~~viyp~H~~~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~iltDSGgiqEE 295 (383)
T COG0381 217 VG-EPLEEICEALREIAEEYPDVIVIYPVHPRPRVRELVLKRLKNVERVKLIDPLGYLDFHNLMKNAFLILTDSGGIQEE 295 (383)
T ss_pred cc-ccHHHHHHHHHHHHHhCCCceEEEeCCCChhhhHHHHHHhCCCCcEEEeCCcchHHHHHHHHhceEEEecCCchhhh
Confidence 43 45555554 444444 444444555 223332233333344322222 57899999999999999999999
Q ss_pred HHhcCCCEEEEecCCC
Q 020516 264 ANAREKPSIALFSSEL 279 (325)
Q Consensus 264 AaAl~~P~iaLfg~t~ 279 (325)
|..+|+|+++|=-.|.
T Consensus 296 Ap~lg~Pvl~lR~~TE 311 (383)
T COG0381 296 APSLGKPVLVLRDTTE 311 (383)
T ss_pred HHhcCCcEEeeccCCC
Confidence 9999999999976664
No 49
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=93.88 E-value=5 Score=36.55 Aligned_cols=78 Identities=21% Similarity=0.215 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHhhcCCCEEEecCCCchHHHHhHHccC---CCccccc--ChHHHHHHHHhCCEEEecC-----chH--HH
Q 020516 195 PIQVWAEIANGLREFRPLFVIPHEKEREGVEDVVGDD---ASIVFIT--TPGQLAALINDSAGVIATN-----TAA--IQ 262 (325)
Q Consensus 195 p~e~~~~l~~~l~~~~~vvl~g~~~e~~~~~~i~~~~---~~~~~~~--~~~el~ali~~a~l~I~~D-----TGp--~H 262 (325)
..+.+.+.+..+. +..++++|...+.+..++..... .++.+.. ...++..+++.||++|.+. +.+ +-
T Consensus 205 ~~~~li~a~~~l~-~~~l~i~G~g~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~ 283 (357)
T cd03795 205 GLDVLLEAAAALP-DAPLVIVGEGPLEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLL 283 (357)
T ss_pred CHHHHHHHHHhcc-CcEEEEEeCChhHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHH
Confidence 3456777777776 33778888766666655555322 2333222 2257899999999999653 222 23
Q ss_pred HHHhcCCCEEE
Q 020516 263 LANAREKPSIA 273 (325)
Q Consensus 263 lAaAl~~P~ia 273 (325)
=|.+.|+|+|+
T Consensus 284 Ea~~~g~Pvi~ 294 (357)
T cd03795 284 EAMAFGKPVIS 294 (357)
T ss_pred HHHHcCCCEEe
Confidence 37889999997
No 50
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=93.84 E-value=0.68 Score=42.15 Aligned_cols=82 Identities=17% Similarity=0.180 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHHhhcCC---CEEEecCCCchHHHHhHHccC---CCccccc--ChHHHHHHHHhCCEEEecCc-----hH
Q 020516 194 LPIQVWAEIANGLREFR---PLFVIPHEKEREGVEDVVGDD---ASIVFIT--TPGQLAALINDSAGVIATNT-----AA 260 (325)
Q Consensus 194 wp~e~~~~l~~~l~~~~---~vvl~g~~~e~~~~~~i~~~~---~~~~~~~--~~~el~ali~~a~l~I~~DT-----Gp 260 (325)
...+...+++..+.++. .++++|+..+.+..++..... .++.+.. ...++..++++||++|.+.. ..
T Consensus 215 k~~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~~s~~e~~~~~ 294 (374)
T cd03817 215 KNIDFLIRAFARLLKEEPDVKLVIVGDGPEREELEELARELGLADRVIFTGFVPREELPDYYKAADLFVFASTTETQGLV 294 (374)
T ss_pred cCHHHHHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcCEEEecccccCcChH
Confidence 35677888888777642 777888766655555554322 2333222 23689999999999997642 44
Q ss_pred HHHHHhcCCCEEEEe
Q 020516 261 IQLANAREKPSIALF 275 (325)
Q Consensus 261 ~HlAaAl~~P~iaLf 275 (325)
+-=|.+.|+|+|+--
T Consensus 295 ~~Ea~~~g~PvI~~~ 309 (374)
T cd03817 295 LLEAMAAGLPVVAVD 309 (374)
T ss_pred HHHHHHcCCcEEEeC
Confidence 666889999999843
No 51
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=93.68 E-value=0.91 Score=41.97 Aligned_cols=101 Identities=19% Similarity=0.190 Sum_probs=62.5
Q ss_pred HcCCCCCCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCC--CEEEecCCCchHHHHhHHccC---CCccc
Q 020516 162 NAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR--PLFVIPHEKEREGVEDVVGDD---ASIVF 236 (325)
Q Consensus 162 ~~~~~~~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~--~vvl~g~~~e~~~~~~i~~~~---~~~~~ 236 (325)
+.+...++.+++..|.-.. . =..+...+.+..+.++. .++++|...+.+..++..... .++.+
T Consensus 190 ~~~~~~~~~~il~~g~l~~----------~--K~~~~li~a~~~l~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~ 257 (371)
T cd04962 190 RLGAPEGEKVLIHISNFRP----------V--KRIDDVIRIFAKVRKEVPARLLLVGDGPERSPAERLARELGLQDDVLF 257 (371)
T ss_pred hcCCCCCCeEEEEeccccc----------c--cCHHHHHHHHHHHHhcCCceEEEEcCCcCHHHHHHHHHHcCCCceEEE
Confidence 3455555666665443221 1 23455666666665443 677777766666655554433 12332
Q ss_pred ccChHHHHHHHHhCCEEEecC-----chHHHHHHhcCCCEEEE
Q 020516 237 ITTPGQLAALINDSAGVIATN-----TAAIQLANAREKPSIAL 274 (325)
Q Consensus 237 ~~~~~el~ali~~a~l~I~~D-----TGp~HlAaAl~~P~iaL 274 (325)
.....++..+++.||++|.+. +..+==|-+.|+|+|+-
T Consensus 258 ~g~~~~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g~PvI~s 300 (371)
T cd04962 258 LGKQDHVEELLSIADLFLLPSEKESFGLAALEAMACGVPVVAS 300 (371)
T ss_pred ecCcccHHHHHHhcCEEEeCCCcCCCccHHHHHHHcCCCEEEe
Confidence 333357899999999999775 34677789999999983
No 52
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=93.67 E-value=3 Score=38.30 Aligned_cols=121 Identities=12% Similarity=0.067 Sum_probs=72.5
Q ss_pred cCHHHHHHHH-HHHHHcCCCCCCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhc---CC--CEEEecCCCc-
Q 020516 148 ISRRLKEVVA-EKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLRE---FR--PLFVIPHEKE- 220 (325)
Q Consensus 148 ~~~~~~~~~~-~~~~~~~~~~~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~---~~--~vvl~g~~~e- 220 (325)
++++....+. .+..+++..+++.+++..|+... .-.|..+.+.+|++.+.+ .+ .++|+.+.--
T Consensus 125 i~~~~l~~a~~~~~~~~~~l~~p~~avLIGG~s~----------~~~~~~~~~~~l~~~l~~~~~~~~~~~~vttSRRTp 194 (311)
T PF06258_consen 125 ITPERLAEAAAAWAPRLAALPRPRVAVLIGGDSK----------HYRWDEEDAERLLDQLAALAAAYGGSLLVTTSRRTP 194 (311)
T ss_pred CCHHHHHHHHHhhhhhhccCCCCeEEEEECcCCC----------CcccCHHHHHHHHHHHHHHHHhCCCeEEEEcCCCCc
Confidence 5556655543 33344444467777655554332 134999977777776653 33 6778876532
Q ss_pred hHHHHhHHc---cCCCcccccCh--HHHHHHHHhCCE-EEecCchHH-HHHHhcCCCEEEEecCC
Q 020516 221 REGVEDVVG---DDASIVFITTP--GQLAALINDSAG-VIATNTAAI-QLANAREKPSIALFSSE 278 (325)
Q Consensus 221 ~~~~~~i~~---~~~~~~~~~~~--~el~ali~~a~l-~I~~DTGp~-HlAaAl~~P~iaLfg~t 278 (325)
.+..+.+.+ ..+.+.+.... .=..++++.||. +||.||--| -=|++.|+|+..+--+.
T Consensus 195 ~~~~~~L~~~~~~~~~~~~~~~~~~nPy~~~La~ad~i~VT~DSvSMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 195 PEAEAALRELLKDNPGVYIWDGTGENPYLGFLAAADAIVVTEDSVSMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred HHHHHHHHHhhcCCCceEEecCCCCCcHHHHHHhCCEEEEcCccHHHHHHHHHcCCCEEEecCCC
Confidence 222233332 23443212211 336789999997 788899877 45899999998887665
No 53
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=93.44 E-value=1.6 Score=38.72 Aligned_cols=110 Identities=11% Similarity=0.080 Sum_probs=65.6
Q ss_pred HHHcCCCCCCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHh---hc-CC-CEEEecCCCchHHHHhHHcc-CCC
Q 020516 160 YKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGL---RE-FR-PLFVIPHEKEREGVEDVVGD-DAS 233 (325)
Q Consensus 160 ~~~~~~~~~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l---~~-~~-~vvl~g~~~e~~~~~~i~~~-~~~ 233 (325)
...++-.+++.|++..|++... =.|..++-.+++..+ .+ .+ ++++..+..-.+.+++++.. .+.
T Consensus 153 ~~~~~p~~rq~vAVlVGg~nk~----------f~~~~d~a~q~~~~l~k~l~~~g~~~lisfSRRTp~~~~s~l~~~l~s 222 (329)
T COG3660 153 FKHLLPLPRQRVAVLVGGNNKA----------FVFQEDKAHQFASLLVKILENQGGSFLISFSRRTPDTVKSILKNNLNS 222 (329)
T ss_pred HHhhCCCCCceEEEEecCCCCC----------CccCHHHHHHHHHHHHHHHHhCCceEEEEeecCCcHHHHHHHHhcccc
Confidence 3334334677887776666532 126556555555444 33 44 77777765544555555543 333
Q ss_pred cccccCh------HHHHHHHHhCCEEEe-cCchHHH-HHHhcCCCEEEEecCCC
Q 020516 234 IVFITTP------GQLAALINDSAGVIA-TNTAAIQ-LANAREKPSIALFSSEL 279 (325)
Q Consensus 234 ~~~~~~~------~el~ali~~a~l~I~-~DTGp~H-lAaAl~~P~iaLfg~t~ 279 (325)
..++--. .=-.++++.||.+|+ -||--|- =|++.|+|+.++|.+..
T Consensus 223 ~~~i~w~~~d~g~NPY~~~La~Adyii~TaDSinM~sEAasTgkPv~~~~~~~~ 276 (329)
T COG3660 223 SPGIVWNNEDTGYNPYIDMLAAADYIISTADSINMCSEAASTGKPVFILEPPNF 276 (329)
T ss_pred CceeEeCCCCCCCCchHHHHhhcceEEEecchhhhhHHHhccCCCeEEEecCCc
Confidence 2211111 236789999999665 5665553 47899999999998865
No 54
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=93.36 E-value=2.7 Score=37.71 Aligned_cols=82 Identities=18% Similarity=0.184 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHhhcCC---CEEEecCCCchHHHHhHHcc--C-CCccccc--ChHHHHHHHHhCCEEEecC-----chHH
Q 020516 195 PIQVWAEIANGLREFR---PLFVIPHEKEREGVEDVVGD--D-ASIVFIT--TPGQLAALINDSAGVIATN-----TAAI 261 (325)
Q Consensus 195 p~e~~~~l~~~l~~~~---~vvl~g~~~e~~~~~~i~~~--~-~~~~~~~--~~~el~ali~~a~l~I~~D-----TGp~ 261 (325)
..+.+.+.+..+.++. .++++|+..+.+..++.... . .++.+.. +..++..++++||++|.+- ++.+
T Consensus 213 ~~~~~i~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~ 292 (374)
T cd03801 213 GVDLLLEALAKLRKEYPDVRLVIVGDGPLREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADVFVLPSLYEGFGLVL 292 (374)
T ss_pred CHHHHHHHHHHHhhhcCCeEEEEEeCcHHHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCEEEecchhccccchH
Confidence 4567777777776642 67888876666666555422 1 2332222 2378999999999999654 4456
Q ss_pred HHHHhcCCCEEEEec
Q 020516 262 QLANAREKPSIALFS 276 (325)
Q Consensus 262 HlAaAl~~P~iaLfg 276 (325)
-=|.+.|+|+|+-=.
T Consensus 293 ~Ea~~~g~pvI~~~~ 307 (374)
T cd03801 293 LEAMAAGLPVVASDV 307 (374)
T ss_pred HHHHHcCCcEEEeCC
Confidence 678999999998443
No 55
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=92.93 E-value=0.51 Score=44.59 Aligned_cols=90 Identities=8% Similarity=-0.063 Sum_probs=57.2
Q ss_pred CCCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCC-CEEEecCCCchHHHHhHHccCC-CcccccChHHHH
Q 020516 167 QGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFVIPHEKEREGVEDVVGDDA-SIVFITTPGQLA 244 (325)
Q Consensus 167 ~~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~-~vvl~g~~~e~~~~~~i~~~~~-~~~~~~~~~el~ 244 (325)
.++.|.+..|+.... -+.+-+..+++.+.... .+++..|...... ...+ ++..... -...
T Consensus 238 ~~~~v~v~~Gs~~~~------------~~~~~~~~~~~a~~~~~~~~i~~~g~~~~~~-----~~~~~~v~~~~~-~p~~ 299 (401)
T cd03784 238 GRPPVYVGFGSMVVR------------DPEALARLDVEAVATLGQRAILSLGWGGLGA-----EDLPDNVRVVDF-VPHD 299 (401)
T ss_pred CCCcEEEeCCCCccc------------CHHHHHHHHHHHHHHcCCeEEEEccCccccc-----cCCCCceEEeCC-CCHH
Confidence 356777776665421 34455566666666555 5665555443221 1122 3321211 2356
Q ss_pred HHHHhCCEEEecCc-hHHHHHHhcCCCEEEE
Q 020516 245 ALINDSAGVIATNT-AAIQLANAREKPSIAL 274 (325)
Q Consensus 245 ali~~a~l~I~~DT-Gp~HlAaAl~~P~iaL 274 (325)
.++..||++|++-. |.++=|.+.|+|+|.+
T Consensus 300 ~ll~~~d~~I~hgG~~t~~eal~~GvP~v~~ 330 (401)
T cd03784 300 WLLPRCAAVVHHGGAGTTAAALRAGVPQLVV 330 (401)
T ss_pred HHhhhhheeeecCCchhHHHHHHcCCCEEee
Confidence 78999999999999 9999999999999998
No 56
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=92.88 E-value=6.9 Score=40.16 Aligned_cols=80 Identities=11% Similarity=0.160 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhhcCC---CEEEecCCCchHHHHhHHccCC---CcccccChHHHHHHHHhCCEEEecCc-----hHHHHH
Q 020516 196 IQVWAEIANGLREFR---PLFVIPHEKEREGVEDVVGDDA---SIVFITTPGQLAALINDSAGVIATNT-----AAIQLA 264 (325)
Q Consensus 196 ~e~~~~l~~~l~~~~---~vvl~g~~~e~~~~~~i~~~~~---~~~~~~~~~el~ali~~a~l~I~~DT-----Gp~HlA 264 (325)
.+.+.+.+..+.++. .++|+|+..+++.++++.+... ++.+.....++..+++.||++|-+.. ..+-=|
T Consensus 532 ~~~LI~A~a~l~~~~p~~~LvIvG~G~~~~~L~~l~~~lgL~~~V~flG~~~dv~~ll~aaDv~VlpS~~Egfp~vlLEA 611 (694)
T PRK15179 532 PFLWVEAAQRFAASHPKVRFIMVGGGPLLESVREFAQRLGMGERILFTGLSRRVGYWLTQFNAFLLLSRFEGLPNVLIEA 611 (694)
T ss_pred HHHHHHHHHHHHHHCcCeEEEEEccCcchHHHHHHHHHcCCCCcEEEcCCcchHHHHHHhcCEEEeccccccchHHHHHH
Confidence 456677766665443 6888887666666666655432 23322223578899999999987532 234457
Q ss_pred HhcCCCEEEEe
Q 020516 265 NAREKPSIALF 275 (325)
Q Consensus 265 aAl~~P~iaLf 275 (325)
-|.|+|+|+-=
T Consensus 612 MA~G~PVVat~ 622 (694)
T PRK15179 612 QFSGVPVVTTL 622 (694)
T ss_pred HHcCCeEEEEC
Confidence 89999999953
No 57
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=92.83 E-value=0.21 Score=46.59 Aligned_cols=102 Identities=14% Similarity=0.171 Sum_probs=63.3
Q ss_pred CCCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCCCEEEecCCCchHHHHhHHccCCCcccccChHHHHHH
Q 020516 167 QGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFRPLFVIPHEKEREGVEDVVGDDASIVFITTPGQLAAL 246 (325)
Q Consensus 167 ~~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~~vvl~g~~~e~~~~~~i~~~~~~~~~~~~~~el~al 246 (325)
+++.|++.|||+..- . .+..| -|.+.+..|.++..++++.++.+.+.+++..........+ .+...+
T Consensus 166 ~~~~I~llPGSR~~E---i-----~~llP--~~~~aa~~L~~~~~~~~i~~a~~~~~i~~~~~~~~~~~~~---~~~~~~ 232 (347)
T PRK14089 166 KEGTIAFMPGSRKSE---I-----KRLMP--IFKELAKKLEGKEKILVVPSFFKGKDLKEIYGDISEFEIS---YDTHKA 232 (347)
T ss_pred CCCEEEEECCCCHHH---H-----HHHHH--HHHHHHHHHhhcCcEEEEeCCCcHHHHHHHHhcCCCcEEe---ccHHHH
Confidence 357899999998653 1 12233 5557777777654334444444445555544332222212 255688
Q ss_pred HHhCCEEEecCchHHHHHHhcCCCEEEEecCCCCC
Q 020516 247 INDSAGVIATNTAAIQLANAREKPSIALFSSELKG 281 (325)
Q Consensus 247 i~~a~l~I~~DTGp~HlAaAl~~P~iaLfg~t~p~ 281 (325)
++.||++|+.-.-.+==++.+|+|+|..|-.+.-.
T Consensus 233 m~~aDlal~~SGT~TLE~al~g~P~Vv~Yk~~~lt 267 (347)
T PRK14089 233 LLEAEFAFICSGTATLEAALIGTPFVLAYKAKAID 267 (347)
T ss_pred HHhhhHHHhcCcHHHHHHHHhCCCEEEEEeCCHHH
Confidence 99999977765444447899999999999765433
No 58
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=92.43 E-value=1.5 Score=39.98 Aligned_cols=85 Identities=15% Similarity=0.210 Sum_probs=56.4
Q ss_pred CCHHHHHHHHHHhhcC-C-CEEEecCCCchHHHHhHHc--cCCCccccc--ChHHHHHHHHhCCEEEecCc--h------
Q 020516 194 LPIQVWAEIANGLREF-R-PLFVIPHEKEREGVEDVVG--DDASIVFIT--TPGQLAALINDSAGVIATNT--A------ 259 (325)
Q Consensus 194 wp~e~~~~l~~~l~~~-~-~vvl~g~~~e~~~~~~i~~--~~~~~~~~~--~~~el~ali~~a~l~I~~DT--G------ 259 (325)
-..+.+.+.+..+.+. . .++++|...+.+...+... ..+++.... +..++..+++.||++|.+-. +
T Consensus 233 k~~~~l~~~~~~l~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~ 312 (394)
T cd03794 233 QGLDTLLEAAALLKDRPDIRFLIVGDGPEKEELKELAKALGLDNVTFLGRVPKEELPELLAAADVGLVPLKPGPAFEGVS 312 (394)
T ss_pred cCHHHHHHHHHHHhhcCCeEEEEeCCcccHHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCeeEEeccCcccccccC
Confidence 4677888888888765 3 7888887666665555322 334444232 22689999999999886422 1
Q ss_pred H--HHHHHhcCCCEEEEecCC
Q 020516 260 A--IQLANAREKPSIALFSSE 278 (325)
Q Consensus 260 p--~HlAaAl~~P~iaLfg~t 278 (325)
| +-=|.+.|+|+|+--.+.
T Consensus 313 p~~~~Ea~~~G~pvi~~~~~~ 333 (394)
T cd03794 313 PSKLFEYMAAGKPVLASVDGE 333 (394)
T ss_pred chHHHHHHHCCCcEEEecCCC
Confidence 2 345788999999864443
No 59
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=91.68 E-value=5.6 Score=32.31 Aligned_cols=136 Identities=15% Similarity=0.145 Sum_probs=75.9
Q ss_pred cCCCCCCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcC---C-CEEEecCCCchHHHHhHHccC---CCcc
Q 020516 163 AGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREF---R-PLFVIPHEKEREGVEDVVGDD---ASIV 235 (325)
Q Consensus 163 ~~~~~~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~---~-~vvl~g~~~e~~~~~~i~~~~---~~~~ 235 (325)
.+...++.+++..|.-. +....+.+.+++..+.++ . .++++|............... .++.
T Consensus 9 ~~~~~~~~~il~~g~~~------------~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~i~ 76 (172)
T PF00534_consen 9 LKIPDKKKIILFIGRLD------------PEKGIDLLIEAFKKLKEKKNPNYKLVIVGDGEYKKELKNLIEKLNLKENII 76 (172)
T ss_dssp TTT-TTSEEEEEESESS------------GGGTHHHHHHHHHHHHHHHHTTEEEEEESHCCHHHHHHHHHHHTTCGTTEE
T ss_pred cCCCCCCeEEEEEecCc------------cccCHHHHHHHHHHHHhhcCCCeEEEEEccccccccccccccccccccccc
Confidence 44555666666665433 225677888888888642 2 667777333333333333322 1232
Q ss_pred cccC--hHHHHHHHHhCCEEEec---CchHHHH--HHhcCCCEEEEecCCCCCccccCCCCCCceeeeeCCCCCCCCCCH
Q 020516 236 FITT--PGQLAALINDSAGVIAT---NTAAIQL--ANAREKPSIALFSSELKGRLFVPNAEEKKCTVISSRTGKLIDTPV 308 (325)
Q Consensus 236 ~~~~--~~el~ali~~a~l~I~~---DTGp~Hl--AaAl~~P~iaLfg~t~p~~~~pp~~~~~~~~~~~~~~~~m~~I~~ 308 (325)
+... ..++..+++.||++|.. ++.++=+ |-+.|+|+|+--.+........ . .....+. .=++
T Consensus 77 ~~~~~~~~~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~~~~~e~~~~-~---~~g~~~~-------~~~~ 145 (172)
T PF00534_consen 77 FLGYVPDDELDELYKSSDIFVSPSRNEGFGLSLLEAMACGCPVIASDIGGNNEIIND-G---VNGFLFD-------PNDI 145 (172)
T ss_dssp EEESHSHHHHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESSTHHHHHSGT-T---TSEEEES-------TTSH
T ss_pred ccccccccccccccccceeccccccccccccccccccccccceeeccccCCceeecc-c---cceEEeC-------CCCH
Confidence 2222 25899999999999966 3444433 5788999998664443332222 2 1222332 1278
Q ss_pred HHHHHHHHHHHHh
Q 020516 309 EAVLNAMQIFNES 321 (325)
Q Consensus 309 ~~V~~~~~~~~~~ 321 (325)
++..+++.++..+
T Consensus 146 ~~l~~~i~~~l~~ 158 (172)
T PF00534_consen 146 EELADAIEKLLND 158 (172)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC
Confidence 8888888877543
No 60
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=91.38 E-value=3.9 Score=37.19 Aligned_cols=80 Identities=13% Similarity=0.170 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHhhcCC---CEEEecCCCchHHHHhHHccC---CCccccc--ChHHHHHHHHhCCEEEecCch-------
Q 020516 195 PIQVWAEIANGLREFR---PLFVIPHEKEREGVEDVVGDD---ASIVFIT--TPGQLAALINDSAGVIATNTA------- 259 (325)
Q Consensus 195 p~e~~~~l~~~l~~~~---~vvl~g~~~e~~~~~~i~~~~---~~~~~~~--~~~el~ali~~a~l~I~~DTG------- 259 (325)
..+.+.+.++.+..++ .++++|+..+.+...+..... .++.... +..++..++++||++|.+...
T Consensus 193 ~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e 272 (355)
T cd03799 193 GLDYLLEALALLKDRGIDFRLDIVGDGPLRDELEALIAELGLEDRVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDRE 272 (355)
T ss_pred CHHHHHHHHHHHhhcCCCeEEEEEECCccHHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHhCCEEEecceecCCCCcc
Confidence 4667788888777653 677777766666555554433 2232221 236899999999999986332
Q ss_pred ----HHHHHHhcCCCEEEE
Q 020516 260 ----AIQLANAREKPSIAL 274 (325)
Q Consensus 260 ----p~HlAaAl~~P~iaL 274 (325)
.+==|.|+|+|+|+-
T Consensus 273 ~~~~~~~Ea~a~G~Pvi~~ 291 (355)
T cd03799 273 GLPVVLMEAMAMGLPVIST 291 (355)
T ss_pred CccHHHHHHHHcCCCEEec
Confidence 344478999999984
No 61
>PRK10307 putative glycosyl transferase; Provisional
Probab=91.33 E-value=2.2 Score=40.45 Aligned_cols=104 Identities=14% Similarity=0.149 Sum_probs=59.9
Q ss_pred HHHcCCCCCCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCC--CEEEecCCCchHHHHhHHcc--CCCcc
Q 020516 160 YKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR--PLFVIPHEKEREGVEDVVGD--DASIV 235 (325)
Q Consensus 160 ~~~~~~~~~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~--~vvl~g~~~e~~~~~~i~~~--~~~~~ 235 (325)
....++++++.+++..|.-.. .| ..+...+.+..+.+.. .++++|...+++.+++..+. ..++.
T Consensus 220 ~~~~~~~~~~~~i~~~G~l~~----------~k--g~~~li~a~~~l~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~~v~ 287 (412)
T PRK10307 220 RAQLGLPDGKKIVLYSGNIGE----------KQ--GLELVIDAARRLRDRPDLIFVICGQGGGKARLEKMAQCRGLPNVH 287 (412)
T ss_pred HHHcCCCCCCEEEEEcCcccc----------cc--CHHHHHHHHHHhccCCCeEEEEECCChhHHHHHHHHHHcCCCceE
Confidence 334566655566666543221 12 4456666666664433 67777765566666555442 23443
Q ss_pred ccc--ChHHHHHHHHhCCEEEecCc-h------HHH--HHHhcCCCEEEEe
Q 020516 236 FIT--TPGQLAALINDSAGVIATNT-A------AIQ--LANAREKPSIALF 275 (325)
Q Consensus 236 ~~~--~~~el~ali~~a~l~I~~DT-G------p~H--lAaAl~~P~iaLf 275 (325)
+.. ...++..+++.||++|.+-. + |.- =|-|.|+|+|+-=
T Consensus 288 f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~ 338 (412)
T PRK10307 288 FLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATA 338 (412)
T ss_pred EeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEe
Confidence 222 23689999999999775432 1 111 1468999999864
No 62
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=90.88 E-value=13 Score=34.86 Aligned_cols=83 Identities=14% Similarity=0.124 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHhhcCC---CEEEecCCCc-----h-H---HHHhHHccCC-Cccccc--ChHHHHHHHHhCCEEEecCc-
Q 020516 195 PIQVWAEIANGLREFR---PLFVIPHEKE-----R-E---GVEDVVGDDA-SIVFIT--TPGQLAALINDSAGVIATNT- 258 (325)
Q Consensus 195 p~e~~~~l~~~l~~~~---~vvl~g~~~e-----~-~---~~~~i~~~~~-~~~~~~--~~~el~ali~~a~l~I~~DT- 258 (325)
..+...+.+..+.++. .++++|+..+ . + .++++..... ++.+.. ...++..+++.||++|.+-.
T Consensus 207 g~~~Li~A~~~l~~~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~~~~~~aDv~v~pS~~ 286 (380)
T PRK15484 207 GILLLMQAFEKLATAHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMHNYYPLADLVVVPSQV 286 (380)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHhCCEEEeCCCC
Confidence 4455666666665443 5777775432 1 1 2223332322 222221 23689999999999997532
Q ss_pred -----hHHHHHHhcCCCEEEEecC
Q 020516 259 -----AAIQLANAREKPSIALFSS 277 (325)
Q Consensus 259 -----Gp~HlAaAl~~P~iaLfg~ 277 (325)
..+-=|-|.|+|+|+--..
T Consensus 287 ~E~f~~~~lEAma~G~PVI~s~~g 310 (380)
T PRK15484 287 EEAFCMVAVEAMAAGKPVLASTKG 310 (380)
T ss_pred ccccccHHHHHHHcCCCEEEeCCC
Confidence 2344578999999996543
No 63
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=90.84 E-value=2.6 Score=38.30 Aligned_cols=81 Identities=16% Similarity=0.144 Sum_probs=54.1
Q ss_pred CCHHHHHHHHHHhhcC-C-CEEEecCCCchHHHHhHHccCCCccccc--ChHHHHHHHHhCCEEEecC-----chHHHHH
Q 020516 194 LPIQVWAEIANGLREF-R-PLFVIPHEKEREGVEDVVGDDASIVFIT--TPGQLAALINDSAGVIATN-----TAAIQLA 264 (325)
Q Consensus 194 wp~e~~~~l~~~l~~~-~-~vvl~g~~~e~~~~~~i~~~~~~~~~~~--~~~el~ali~~a~l~I~~D-----TGp~HlA 264 (325)
...+.+.++++.+.++ . .++++|...+.+..+ ....++.+.. ...++..+++.||++|.+- +..+-=|
T Consensus 210 k~~~~~i~~~~~l~~~~~~~l~i~G~~~~~~~~~---~~~~~v~~~g~~~~~~~~~~~~~~d~~l~~s~~e~~~~~~lEa 286 (364)
T cd03814 210 KNLEALLDADLPLRRRPPVRLVIVGDGPARARLE---ARYPNVHFLGFLDGEELAAAYASADVFVFPSRTETFGLVVLEA 286 (364)
T ss_pred cCHHHHHHHHHHhhhcCCceEEEEeCCchHHHHh---ccCCcEEEEeccCHHHHHHHHHhCCEEEECcccccCCcHHHHH
Confidence 4567888888888764 2 677777655544433 2233433222 3378999999999999653 2346678
Q ss_pred HhcCCCEEEEecC
Q 020516 265 NAREKPSIALFSS 277 (325)
Q Consensus 265 aAl~~P~iaLfg~ 277 (325)
.|+|+|+|+--.+
T Consensus 287 ~a~g~PvI~~~~~ 299 (364)
T cd03814 287 MASGLPVVAPDAG 299 (364)
T ss_pred HHcCCCEEEcCCC
Confidence 9999999975433
No 64
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=90.84 E-value=1.7 Score=36.50 Aligned_cols=87 Identities=20% Similarity=0.132 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHhhcC--C-CEEEecCCCchHHHHhHHc---cCCCcccccC---hHHHHHHHHhCCEEEecC-----chH
Q 020516 195 PIQVWAEIANGLREF--R-PLFVIPHEKEREGVEDVVG---DDASIVFITT---PGQLAALINDSAGVIATN-----TAA 260 (325)
Q Consensus 195 p~e~~~~l~~~l~~~--~-~vvl~g~~~e~~~~~~i~~---~~~~~~~~~~---~~el~ali~~a~l~I~~D-----TGp 260 (325)
..+.+.+.+..+.++ . .++++|+..+....+.... ...++.+... ..+...+.+.||++|.+. ++.
T Consensus 118 ~~~~~~~a~~~l~~~~~~~~~~i~G~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~di~l~~~~~e~~~~~ 197 (229)
T cd01635 118 GLDDLIEAFALLKERGPDLKLVIAGDGPEREYLEELLAALLLLDRVIFLGGLDPEELLALLLAAADVFVLPSLREGFGLV 197 (229)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEEeCCCChHHHHHHHHhcCCcccEEEeCCCCcHHHHHHHhhcCCEEEecccccCcChH
Confidence 556788888888764 2 7788887766655544221 1223332322 245566666699999998 788
Q ss_pred HHHHHhcCCCEEEEecCCCCC
Q 020516 261 IQLANAREKPSIALFSSELKG 281 (325)
Q Consensus 261 ~HlAaAl~~P~iaLfg~t~p~ 281 (325)
+.=|-+.|+|+|+--.+....
T Consensus 198 ~~Eam~~g~pvi~s~~~~~~e 218 (229)
T cd01635 198 VLEAMACGLPVIATDVGGPPE 218 (229)
T ss_pred HHHHHhCCCCEEEcCCCCcce
Confidence 999999999999866655443
No 65
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=90.79 E-value=2.9 Score=37.81 Aligned_cols=79 Identities=16% Similarity=0.169 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHhhcCC-CEEEecCCCchHHHHhHHccCCCccccc--ChHHHHHHHHhCCEEEecCc----h--HHHHHH
Q 020516 195 PIQVWAEIANGLREFR-PLFVIPHEKEREGVEDVVGDDASIVFIT--TPGQLAALINDSAGVIATNT----A--AIQLAN 265 (325)
Q Consensus 195 p~e~~~~l~~~l~~~~-~vvl~g~~~e~~~~~~i~~~~~~~~~~~--~~~el~ali~~a~l~I~~DT----G--p~HlAa 265 (325)
..+.+.+.+..+.+.. .++++|...+............++.+.. ...++..++++||++|.+.. . .+-=|.
T Consensus 205 ~~~~li~~~~~l~~~~~~l~i~G~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~ 284 (359)
T cd03823 205 GVDLLLEAFKRLPRGDIELVIVGNGLELEEESYELEGDPRVEFLGAYPQEEIDDFYAEIDVLVVPSIWPENFPLVIREAL 284 (359)
T ss_pred CHHHHHHHHHHHHhcCcEEEEEcCchhhhHHHHhhcCCCeEEEeCCCCHHHHHHHHHhCCEEEEcCcccCCCChHHHHHH
Confidence 3467777777776533 7778876554433322222223332222 23789999999999996532 2 345688
Q ss_pred hcCCCEEE
Q 020516 266 AREKPSIA 273 (325)
Q Consensus 266 Al~~P~ia 273 (325)
+.|+|+|+
T Consensus 285 a~G~Pvi~ 292 (359)
T cd03823 285 AAGVPVIA 292 (359)
T ss_pred HCCCCEEE
Confidence 99999997
No 66
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=90.78 E-value=3.8 Score=36.83 Aligned_cols=93 Identities=15% Similarity=0.129 Sum_probs=61.2
Q ss_pred CCCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCC--CEEEecCCCc-hHHHHhHHccCCCcccccChHHH
Q 020516 167 QGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR--PLFVIPHEKE-REGVEDVVGDDASIVFITTPGQL 243 (325)
Q Consensus 167 ~~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~--~vvl~g~~~e-~~~~~~i~~~~~~~~~~~~~~el 243 (325)
+.+-|.|+-|+|-. |+ --.+++..|.+.. --|++|+.++ ...........|++........+
T Consensus 157 ~~r~ilI~lGGsDp-----------k~----lt~kvl~~L~~~~~nl~iV~gs~~p~l~~l~k~~~~~~~i~~~~~~~dm 221 (318)
T COG3980 157 PKRDILITLGGSDP-----------KN----LTLKVLAELEQKNVNLHIVVGSSNPTLKNLRKRAEKYPNINLYIDTNDM 221 (318)
T ss_pred chheEEEEccCCCh-----------hh----hHHHHHHHhhccCeeEEEEecCCCcchhHHHHHHhhCCCeeeEecchhH
Confidence 34568888887753 22 3445555665554 2344454332 33334444556766533344679
Q ss_pred HHHHHhCCEEEecCchHHHHHHhcCCCEEEE
Q 020516 244 AALINDSAGVIATNTAAIQLANAREKPSIAL 274 (325)
Q Consensus 244 ~ali~~a~l~I~~DTGp~HlAaAl~~P~iaL 274 (325)
+.|++.||+.|+.-+..+-=|..+|+|..+|
T Consensus 222 a~LMke~d~aI~AaGstlyEa~~lgvP~l~l 252 (318)
T COG3980 222 AELMKEADLAISAAGSTLYEALLLGVPSLVL 252 (318)
T ss_pred HHHHHhcchheeccchHHHHHHHhcCCceEE
Confidence 9999999999999999999999999995444
No 67
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=90.38 E-value=0.28 Score=40.35 Aligned_cols=64 Identities=20% Similarity=0.199 Sum_probs=41.3
Q ss_pred CEEEecCCCchHHHHhHHccC-CCcccccChHHHHHHHHhCCEEEecCc-hHHHHHHhcCCCEEEE
Q 020516 211 PLFVIPHEKEREGVEDVVGDD-ASIVFITTPGQLAALINDSAGVIATNT-AAIQLANAREKPSIAL 274 (325)
Q Consensus 211 ~vvl~g~~~e~~~~~~i~~~~-~~~~~~~~~~el~ali~~a~l~I~~DT-Gp~HlAaAl~~P~iaL 274 (325)
.+++..|+.+.+....-.... .++.......++..+++.||++||.-. |.+-=+.+.|+|+|.+
T Consensus 33 ~viv~~G~~~~~~~~~~~~~~~~~v~~~~~~~~m~~~m~~aDlvIs~aG~~Ti~E~l~~g~P~I~i 98 (167)
T PF04101_consen 33 QVIVQTGKNNYEELKIKVENFNPNVKVFGFVDNMAELMAAADLVISHAGAGTIAEALALGKPAIVI 98 (167)
T ss_dssp CCCCCCTTCECHHHCCCHCCTTCCCEEECSSSSHHHHHHHHSEEEECS-CHHHHHHHHCT--EEEE
T ss_pred EEEEEECCCcHHHHHHHHhccCCcEEEEechhhHHHHHHHcCEEEeCCCccHHHHHHHcCCCeecc
Confidence 577777766444332222222 333323333569999999999999766 6889999999999876
No 68
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=89.96 E-value=5.3 Score=36.75 Aligned_cols=78 Identities=14% Similarity=0.142 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhhcCC---CEEEecCCCchHHHHhHHccC---CCccccc--ChHHHHHHHHhCCEEEecC----------
Q 020516 196 IQVWAEIANGLREFR---PLFVIPHEKEREGVEDVVGDD---ASIVFIT--TPGQLAALINDSAGVIATN---------- 257 (325)
Q Consensus 196 ~e~~~~l~~~l~~~~---~vvl~g~~~e~~~~~~i~~~~---~~~~~~~--~~~el~ali~~a~l~I~~D---------- 257 (325)
.+.+.+.+..+.++. .++++|...+.+.+++..+.. .++.+.. ...++..+++.||++|.+-
T Consensus 203 ~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ad~~v~ps~~~~~~~~E~ 282 (367)
T cd05844 203 PLLLLEAFARLARRVPEVRLVIIGDGPLLAALEALARALGLGGRVTFLGAQPHAEVRELMRRARIFLQPSVTAPSGDAEG 282 (367)
T ss_pred hHHHHHHHHHHHHhCCCeEEEEEeCchHHHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHhCCEEEECcccCCCCCccC
Confidence 345666666665542 677777655555555555442 2333222 2268999999999998753
Q ss_pred -chHHHHHHhcCCCEEE
Q 020516 258 -TAAIQLANAREKPSIA 273 (325)
Q Consensus 258 -TGp~HlAaAl~~P~ia 273 (325)
...+==|.|.|+|+|+
T Consensus 283 ~~~~~~EA~a~G~PvI~ 299 (367)
T cd05844 283 LPVVLLEAQASGVPVVA 299 (367)
T ss_pred CchHHHHHHHcCCCEEE
Confidence 1345568999999996
No 69
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=89.82 E-value=4.4 Score=39.39 Aligned_cols=79 Identities=10% Similarity=0.071 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHhhcCC-CEEEecCCC--chHHHHhHHccCCC-ccccc--ChHHHHHHHHhCCEEEecC-----chHHHH
Q 020516 195 PIQVWAEIANGLREFR-PLFVIPHEK--EREGVEDVVGDDAS-IVFIT--TPGQLAALINDSAGVIATN-----TAAIQL 263 (325)
Q Consensus 195 p~e~~~~l~~~l~~~~-~vvl~g~~~--e~~~~~~i~~~~~~-~~~~~--~~~el~ali~~a~l~I~~D-----TGp~Hl 263 (325)
..+...+.+..+.+.. +++++|+.. .++.++++....++ +.+.. +..++..+++.||++|.+- +-..--
T Consensus 305 g~~~li~a~~~l~~~~~~lvi~G~g~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lE 384 (473)
T TIGR02095 305 GVDLLLAALPELLELGGQLVVLGTGDPELEEALRELAERYPGNVRVIIGYDEALAHLIYAGADFILMPSRFEPCGLTQLY 384 (473)
T ss_pred ChHHHHHHHHHHHHcCcEEEEECCCCHHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHhCCEEEeCCCcCCcHHHHHH
Confidence 4567788888877666 788887653 23455556555443 22121 2245678999999999762 234556
Q ss_pred HHhcCCCEEE
Q 020516 264 ANAREKPSIA 273 (325)
Q Consensus 264 AaAl~~P~ia 273 (325)
|.+.|+|+|+
T Consensus 385 Ama~G~pvI~ 394 (473)
T TIGR02095 385 AMRYGTVPIV 394 (473)
T ss_pred HHHCCCCeEE
Confidence 9999999997
No 70
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=89.78 E-value=1.6 Score=39.10 Aligned_cols=86 Identities=22% Similarity=0.288 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHhhcCC---CEEEecCCCch-----HHHHhHHccCCCcccccChHHHHHHHHhCCEEEecCchHHHHHHh
Q 020516 195 PIQVWAEIANGLREFR---PLFVIPHEKER-----EGVEDVVGDDASIVFITTPGQLAALINDSAGVIATNTAAIQLANA 266 (325)
Q Consensus 195 p~e~~~~l~~~l~~~~---~vvl~g~~~e~-----~~~~~i~~~~~~~~~~~~~~el~ali~~a~l~I~~DTGp~HlAaA 266 (325)
..+.+.++++.+.+.. .+++=.+|.+. ...+++.. ..+...+.....+..||++||.+|+.-|...==|..
T Consensus 138 ~~~~~~~~l~~~~~~~p~~~lvvK~HP~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~Ll~~s~~VvtinStvGlEAll 216 (269)
T PF05159_consen 138 SQADFLDMLESFAKENPDAKLVVKPHPDERGGNKYSYLEELPN-LPNVVIIDDDVNLYELLEQSDAVVTINSTVGLEALL 216 (269)
T ss_pred cHhHHHHHHHHHHHHCCCCEEEEEECchhhCCCChhHhhhhhc-CCCeEEECCCCCHHHHHHhCCEEEEECCHHHHHHHH
Confidence 4567777777776543 66666788543 22222222 233332333367889999999999999999999999
Q ss_pred cCCCEEEEecCCCCCc
Q 020516 267 REKPSIALFSSELKGR 282 (325)
Q Consensus 267 l~~P~iaLfg~t~p~~ 282 (325)
.|+||++ ||.+.-..
T Consensus 217 ~gkpVi~-~G~~~Y~~ 231 (269)
T PF05159_consen 217 HGKPVIV-FGRAFYAG 231 (269)
T ss_pred cCCceEE-ecCcccCC
Confidence 9999998 67665443
No 71
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=89.66 E-value=4.5 Score=36.95 Aligned_cols=78 Identities=14% Similarity=0.070 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHhhcC--C--CEEEecCCCchHHHHhHHccCCCccc---ccChHHHHHHHHhCCEEEecC-----chHH
Q 020516 194 LPIQVWAEIANGLREF--R--PLFVIPHEKEREGVEDVVGDDASIVF---ITTPGQLAALINDSAGVIATN-----TAAI 261 (325)
Q Consensus 194 wp~e~~~~l~~~l~~~--~--~vvl~g~~~e~~~~~~i~~~~~~~~~---~~~~~el~ali~~a~l~I~~D-----TGp~ 261 (325)
-..+.+.+.+..+.++ . .++++|...+... . ....++.+ +....++..+++.||++|.+. +..+
T Consensus 206 K~~~~ll~a~~~l~~~~~~~~~~~i~G~~~~~~~-~---~~~~~v~~~g~~~~~~~~~~~~~~ad~~l~ps~~e~~g~~~ 281 (365)
T cd03825 206 KGFDELIEALKRLAERWKDDIELVVFGASDPEIP-P---DLPFPVHYLGSLNDDESLALIYSAADVFVVPSLQENFPNTA 281 (365)
T ss_pred cCHHHHHHHHHHhhhccCCCeEEEEeCCCchhhh-c---cCCCceEecCCcCCHHHHHHHHHhCCEEEeccccccccHHH
Confidence 3556777777777653 2 5555555433222 1 11111211 122357899999999999976 5788
Q ss_pred HHHHhcCCCEEEEe
Q 020516 262 QLANAREKPSIALF 275 (325)
Q Consensus 262 HlAaAl~~P~iaLf 275 (325)
.=|.+.|+|+|+.-
T Consensus 282 ~Eam~~g~PvI~~~ 295 (365)
T cd03825 282 IEALACGTPVVAFD 295 (365)
T ss_pred HHHHhcCCCEEEec
Confidence 89999999999753
No 72
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=89.53 E-value=5 Score=37.75 Aligned_cols=80 Identities=14% Similarity=0.159 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhhcCC-----CEEEecCCC-----chHHHHhHHccC---CCccccc--ChHHHHHHHHhCCEEEecC---
Q 020516 196 IQVWAEIANGLREFR-----PLFVIPHEK-----EREGVEDVVGDD---ASIVFIT--TPGQLAALINDSAGVIATN--- 257 (325)
Q Consensus 196 ~e~~~~l~~~l~~~~-----~vvl~g~~~-----e~~~~~~i~~~~---~~~~~~~--~~~el~ali~~a~l~I~~D--- 257 (325)
.+...+.+..+.++. .++++|++. +.+.++++.+.. .++.+.. +..++..+++.||++|.+-
T Consensus 234 ~~~li~a~~~l~~~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~E 313 (405)
T TIGR03449 234 PDVLLRAVAELLDRDPDRNLRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRAADVVAVPSYNE 313 (405)
T ss_pred HHHHHHHHHHHHhhCCCcceEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHhCCEEEECCCCC
Confidence 345566665554332 457777642 233444444332 2233221 2368999999999988653
Q ss_pred --chHHHHHHhcCCCEEEEe
Q 020516 258 --TAAIQLANAREKPSIALF 275 (325)
Q Consensus 258 --TGp~HlAaAl~~P~iaLf 275 (325)
+..+-=|.+.|+|+|+-=
T Consensus 314 ~~g~~~lEAma~G~Pvi~~~ 333 (405)
T TIGR03449 314 SFGLVAMEAQACGTPVVAAR 333 (405)
T ss_pred CcChHHHHHHHcCCCEEEec
Confidence 356888999999999854
No 73
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=89.43 E-value=0.95 Score=35.34 Aligned_cols=109 Identities=17% Similarity=0.223 Sum_probs=60.0
Q ss_pred CHHHHHH-HHHHhhcCC---CEEEecCCCchHHHHhHHccCCCcccccChHHHHHHHHhCCEEEecC------chHHHHH
Q 020516 195 PIQVWAE-IANGLREFR---PLFVIPHEKEREGVEDVVGDDASIVFITTPGQLAALINDSAGVIATN------TAAIQLA 264 (325)
Q Consensus 195 p~e~~~~-l~~~l~~~~---~vvl~g~~~e~~~~~~i~~~~~~~~~~~~~~el~ali~~a~l~I~~D------TGp~HlA 264 (325)
..+.+.+ ..+.+.++. .+.++|+..+ .++++ ..+++.+.....++..++++||+.|.+- ++-+-=|
T Consensus 16 ~~~~li~~~~~~l~~~~p~~~l~i~G~~~~--~l~~~--~~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~ 91 (135)
T PF13692_consen 16 GLEELIEAALERLKEKHPDIELIIIGNGPD--ELKRL--RRPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEA 91 (135)
T ss_dssp THHHHHH-HHHHHHHHSTTEEEEEECESS---HHCCH--HHCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHH
T ss_pred cccchhhhHHHHHHHHCcCEEEEEEeCCHH--HHHHh--cCCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHH
Confidence 5566666 666676553 6777776444 23333 1234442332368999999999988852 3567778
Q ss_pred HhcCCCEEEEecCCCCCccccCCCCCCceeeeeCCCCCCCCCCHHHHHHHHHHHHH
Q 020516 265 NAREKPSIALFSSELKGRLFVPNAEEKKCTVISSRTGKLIDTPVEAVLNAMQIFNE 320 (325)
Q Consensus 265 aAl~~P~iaLfg~t~p~~~~pp~~~~~~~~~~~~~~~~m~~I~~~~V~~~~~~~~~ 320 (325)
.+.|+|+|+-=. .... .+ . .. .+-.+ + .=+++++.+++.++..
T Consensus 92 ~~~G~pvi~~~~--~~~~-~~-~-~~-~~~~~------~-~~~~~~l~~~i~~l~~ 134 (135)
T PF13692_consen 92 MAAGKPVIASDN--GAEG-IV-E-ED-GCGVL------V-ANDPEELAEAIERLLN 134 (135)
T ss_dssp HCTT--EEEEHH--HCHC-HS------SEEEE--------TT-HHHHHHHHHHHHH
T ss_pred HHhCCCEEECCc--chhh-he-e-ec-CCeEE------E-CCCHHHHHHHHHHHhc
Confidence 999999999544 1111 22 1 11 12111 2 2279999999988765
No 74
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=88.66 E-value=7.7 Score=36.94 Aligned_cols=83 Identities=12% Similarity=0.131 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHhhcCC---CEEEecCCCchHHHHhHHccCC---Ccccc--cChHHHHHHHHhCCEEEecC---------
Q 020516 195 PIQVWAEIANGLREFR---PLFVIPHEKEREGVEDVVGDDA---SIVFI--TTPGQLAALINDSAGVIATN--------- 257 (325)
Q Consensus 195 p~e~~~~l~~~l~~~~---~vvl~g~~~e~~~~~~i~~~~~---~~~~~--~~~~el~ali~~a~l~I~~D--------- 257 (325)
..+...+.+..+.+++ .++++|+..+++.+++..+... ++.+. .+..++..+++.||++|.+.
T Consensus 236 g~~~ll~a~~~l~~~~~~~~l~ivG~G~~~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~E 315 (406)
T PRK15427 236 GLHVAIEACRQLKEQGVAFRYRILGIGPWERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDME 315 (406)
T ss_pred CHHHHHHHHHHHHhhCCCEEEEEEECchhHHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHhCCEEEECCccCCCCCcc
Confidence 3456777777776554 5677776555555555554332 22211 12368999999999999763
Q ss_pred chH--HHHHHhcCCCEEEEecC
Q 020516 258 TAA--IQLANAREKPSIALFSS 277 (325)
Q Consensus 258 TGp--~HlAaAl~~P~iaLfg~ 277 (325)
+-| +-=|-|.|+|+|+--..
T Consensus 316 g~p~~llEAma~G~PVI~t~~~ 337 (406)
T PRK15427 316 GIPVALMEAMAVGIPVVSTLHS 337 (406)
T ss_pred CccHHHHHHHhCCCCEEEeCCC
Confidence 333 34489999999986433
No 75
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=88.59 E-value=19 Score=32.79 Aligned_cols=80 Identities=16% Similarity=0.108 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHhhcCCCEEEecCC-CchHHHHhHHc---cCCCccccc--ChHHHHHHHHhCCEEEecCch------HHH
Q 020516 195 PIQVWAEIANGLREFRPLFVIPHE-KEREGVEDVVG---DDASIVFIT--TPGQLAALINDSAGVIATNTA------AIQ 262 (325)
Q Consensus 195 p~e~~~~l~~~l~~~~~vvl~g~~-~e~~~~~~i~~---~~~~~~~~~--~~~el~ali~~a~l~I~~DTG------p~H 262 (325)
..+...+.+..+.....++++|+. .+.+..+.+.. ...++.+.. ...++..++++||+++.+..- .+-
T Consensus 207 g~~~li~a~~~l~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~~~e~~~~~~~ 286 (363)
T cd04955 207 NIDDLIEAFSKSNSGKKLVIVGNADHNTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAALFYLHGHSVGGTNPSLL 286 (363)
T ss_pred CHHHHHHHHHhhccCceEEEEcCCCCcchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCCEEEeCCccCCCCChHHH
Confidence 455666666666553378888865 33333333331 123333222 236788999999998876543 456
Q ss_pred HHHhcCCCEEEE
Q 020516 263 LANAREKPSIAL 274 (325)
Q Consensus 263 lAaAl~~P~iaL 274 (325)
=|-|.|+|+|+-
T Consensus 287 EAma~G~PvI~s 298 (363)
T cd04955 287 EAMAYGCPVLAS 298 (363)
T ss_pred HHHHcCCCEEEe
Confidence 789999999984
No 76
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=88.48 E-value=5 Score=37.28 Aligned_cols=80 Identities=18% Similarity=0.195 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHhhcCC---CEEEecCCCch------HHHHhHHccC---CCccccc--ChHHHHHHHHhCCEEEecC---
Q 020516 195 PIQVWAEIANGLREFR---PLFVIPHEKER------EGVEDVVGDD---ASIVFIT--TPGQLAALINDSAGVIATN--- 257 (325)
Q Consensus 195 p~e~~~~l~~~l~~~~---~vvl~g~~~e~------~~~~~i~~~~---~~~~~~~--~~~el~ali~~a~l~I~~D--- 257 (325)
..+.+.+.+..+.++. .++++|+..+. ...+++.+.. .++.+.. ...++..+++.||++|.+-
T Consensus 234 ~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adi~l~ps~~e 313 (398)
T cd03800 234 GIDTLIRAYAELPELRERANLVIVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSREDLPALYRAADVFVNPALYE 313 (398)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEeccCCHHHHHHHHHhCCEEEeccccc
Confidence 4567888888877543 67777764332 1122233222 2232222 2368999999999999652
Q ss_pred c--hHHHHHHhcCCCEEEE
Q 020516 258 T--AAIQLANAREKPSIAL 274 (325)
Q Consensus 258 T--Gp~HlAaAl~~P~iaL 274 (325)
+ ..+-=|.|.|+|+|+-
T Consensus 314 ~~~~~l~Ea~a~G~Pvi~s 332 (398)
T cd03800 314 PFGLTALEAMACGLPVVAT 332 (398)
T ss_pred ccCcHHHHHHhcCCCEEEC
Confidence 1 2467789999999863
No 77
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=88.40 E-value=2.1 Score=37.40 Aligned_cols=82 Identities=18% Similarity=0.203 Sum_probs=51.6
Q ss_pred CCHHHHHHHHHHhhcCC-CEEEe-cCCCc----hHHHHhHH--c-cCCCc---ccccChHHHHHHHHhCCEEEecCchHH
Q 020516 194 LPIQVWAEIANGLREFR-PLFVI-PHEKE----REGVEDVV--G-DDASI---VFITTPGQLAALINDSAGVIATNTAAI 261 (325)
Q Consensus 194 wp~e~~~~l~~~l~~~~-~vvl~-g~~~e----~~~~~~i~--~-~~~~~---~~~~~~~el~ali~~a~l~I~~DTGp~ 261 (325)
-..+.+.++++.+.+.+ .++++ ....+ .+...... . ..... ....++.++..++++|+++||+=-=..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Is~RlH~~ 269 (286)
T PF04230_consen 190 EYIEEIAELIQRLLDKGYKIVLLPFSPSDDDEDDDDFNEIDIKAEKFFNVIIIDYSLSPDELLELISQADLVISMRLHGA 269 (286)
T ss_pred hHHHHHHHHHHHhhcccceeEEEEeeeccchhhHHHHHhhhhhcccccceeEecCCCCHHHHHHHHhcCCEEEecCCHHH
Confidence 56788889998888865 33333 22211 11111111 1 11111 112355899999999999999876666
Q ss_pred HHHHhcCCCEEEEe
Q 020516 262 QLANAREKPSIALF 275 (325)
Q Consensus 262 HlAaAl~~P~iaLf 275 (325)
=+|.+.|+|+|+|-
T Consensus 270 I~a~~~g~P~i~i~ 283 (286)
T PF04230_consen 270 ILALSLGVPVIAIS 283 (286)
T ss_pred HHHHHcCCCEEEEe
Confidence 68899999999984
No 78
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=88.02 E-value=11 Score=34.98 Aligned_cols=80 Identities=15% Similarity=0.168 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHhhcCCCEEEecC-CCchHHHHhH---HccCC----Cccccc---ChHHHHHHHHhCCEEEecC---c-h
Q 020516 195 PIQVWAEIANGLREFRPLFVIPH-EKEREGVEDV---VGDDA----SIVFIT---TPGQLAALINDSAGVIATN---T-A 259 (325)
Q Consensus 195 p~e~~~~l~~~l~~~~~vvl~g~-~~e~~~~~~i---~~~~~----~~~~~~---~~~el~ali~~a~l~I~~D---T-G 259 (325)
..+...+.+..+.....++++|+ +.+.+..+++ ..... ++..+. +..++..+++.||++|.+- + |
T Consensus 215 g~~~li~a~~~l~~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~aDv~v~ps~~e~~g 294 (388)
T TIGR02149 215 GVPHLLDAVHYIPKDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSNAEVFVCPSIYEPLG 294 (388)
T ss_pred CHHHHHHHHHHHhhcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHhCCEEEeCCccCCCC
Confidence 45566666666654446666654 4433322222 22222 122221 2368999999999999752 2 3
Q ss_pred HH-HHHHhcCCCEEEE
Q 020516 260 AI-QLANAREKPSIAL 274 (325)
Q Consensus 260 p~-HlAaAl~~P~iaL 274 (325)
.. ==|.|.|+|+|+-
T Consensus 295 ~~~lEA~a~G~PvI~s 310 (388)
T TIGR02149 295 IVNLEAMACGTPVVAS 310 (388)
T ss_pred hHHHHHHHcCCCEEEe
Confidence 22 3479999999984
No 79
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=87.88 E-value=20 Score=32.35 Aligned_cols=79 Identities=16% Similarity=0.160 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHhhcCC---CEEEecCCCchH-HHHh-----HHc--cCCCcccccC---hHHHHHHHHhCCEEEecC---
Q 020516 195 PIQVWAEIANGLREFR---PLFVIPHEKERE-GVED-----VVG--DDASIVFITT---PGQLAALINDSAGVIATN--- 257 (325)
Q Consensus 195 p~e~~~~l~~~l~~~~---~vvl~g~~~e~~-~~~~-----i~~--~~~~~~~~~~---~~el~ali~~a~l~I~~D--- 257 (325)
..+.+.+.+..+.++. .++++|...+.. .... +.. ..+++.+... ..++..+++.||++|.+-
T Consensus 199 ~~~~ll~a~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~ad~~v~ps~~e 278 (366)
T cd03822 199 GLELLLEALPLLVAKHPDVRLLVAGETHPDLERYRGEAYALAERLGLADRVIFINRYLPDEELPELFSAADVVVLPYRSA 278 (366)
T ss_pred CHHHHHHHHHHHHhhCCCeEEEEeccCccchhhhhhhhHhHHHhcCCCCcEEEecCcCCHHHHHHHHhhcCEEEeccccc
Confidence 4567777777777653 566666532221 1111 221 1123332222 368999999999998532
Q ss_pred ----chHHHHHHhcCCCEEE
Q 020516 258 ----TAAIQLANAREKPSIA 273 (325)
Q Consensus 258 ----TGp~HlAaAl~~P~ia 273 (325)
++.+--|.|+|+|+|+
T Consensus 279 ~~~~~~~~~Ea~a~G~PvI~ 298 (366)
T cd03822 279 DQTQSGVLAYAIGFGKPVIS 298 (366)
T ss_pred ccccchHHHHHHHcCCCEEe
Confidence 3456668999999997
No 80
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=87.15 E-value=5.4 Score=37.64 Aligned_cols=79 Identities=10% Similarity=0.067 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhhcCC---CEEEecCCCchHHHHhHHccC--CC-ccccc--ChHHHHHHHHhCCEEEecCc-----hHHH
Q 020516 196 IQVWAEIANGLREFR---PLFVIPHEKEREGVEDVVGDD--AS-IVFIT--TPGQLAALINDSAGVIATNT-----AAIQ 262 (325)
Q Consensus 196 ~e~~~~l~~~l~~~~---~vvl~g~~~e~~~~~~i~~~~--~~-~~~~~--~~~el~ali~~a~l~I~~DT-----Gp~H 262 (325)
.+...+.+..+.++. .++++|.....+..+++.+.. .+ +.+.. +..++..+++.||++|.+.. ..+-
T Consensus 208 ~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~ad~~v~pS~~E~~g~~~~ 287 (398)
T cd03796 208 IDLLVGIIPEICKKHPNVRFIIGGDGPKRILLEEMREKYNLQDRVELLGAVPHERVRDVLVQGHIFLNTSLTEAFCIAIV 287 (398)
T ss_pred HHHHHHHHHHHHhhCCCEEEEEEeCCchHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhCCEEEeCChhhccCHHHH
Confidence 455666666665432 677777655555555554432 22 33222 23689999999999987542 2566
Q ss_pred HHHhcCCCEEEE
Q 020516 263 LANAREKPSIAL 274 (325)
Q Consensus 263 lAaAl~~P~iaL 274 (325)
=|-|.|+|+|+-
T Consensus 288 EAma~G~PVI~s 299 (398)
T cd03796 288 EAASCGLLVVST 299 (398)
T ss_pred HHHHcCCCEEEC
Confidence 789999999984
No 81
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=86.34 E-value=12 Score=34.26 Aligned_cols=75 Identities=16% Similarity=0.165 Sum_probs=46.1
Q ss_pred HHHHHHHHhhcCC-CEEEecCCCchHHHHhHHccCCCccccc--ChHHHHHHHHhCCEEEecC--ch--HHHHHHhcCCC
Q 020516 198 VWAEIANGLREFR-PLFVIPHEKEREGVEDVVGDDASIVFIT--TPGQLAALINDSAGVIATN--TA--AIQLANAREKP 270 (325)
Q Consensus 198 ~~~~l~~~l~~~~-~vvl~g~~~e~~~~~~i~~~~~~~~~~~--~~~el~ali~~a~l~I~~D--TG--p~HlAaAl~~P 270 (325)
+...+++.+..-. +++++|+..+.+..++ ....++.+.. +..++..+++.||++|.+- +- .+==|.|.|+|
T Consensus 209 ~~~~li~a~~~~~~~l~ivG~g~~~~~l~~--~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~e~~g~~~~Eama~G~P 286 (351)
T cd03804 209 RIDLAIEAFNKLGKRLVVIGDGPELDRLRA--KAGPNVTFLGRVSDEELRDLYARARAFLFPAEEDFGIVPVEAMASGTP 286 (351)
T ss_pred ChHHHHHHHHHCCCcEEEEECChhHHHHHh--hcCCCEEEecCCCHHHHHHHHHhCCEEEECCcCCCCchHHHHHHcCCC
Confidence 3444444443333 7888887666555554 2223443222 2367999999999999652 22 23347899999
Q ss_pred EEEE
Q 020516 271 SIAL 274 (325)
Q Consensus 271 ~iaL 274 (325)
+|+.
T Consensus 287 vi~~ 290 (351)
T cd03804 287 VIAY 290 (351)
T ss_pred EEEe
Confidence 9996
No 82
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=86.26 E-value=7.6 Score=35.07 Aligned_cols=80 Identities=15% Similarity=0.143 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHhhcCC---CEEEecCCCc--hHHHHhHHccC---CCccccc--ChHHHHHHHHhCCEEEecC-----ch
Q 020516 195 PIQVWAEIANGLREFR---PLFVIPHEKE--REGVEDVVGDD---ASIVFIT--TPGQLAALINDSAGVIATN-----TA 259 (325)
Q Consensus 195 p~e~~~~l~~~l~~~~---~vvl~g~~~e--~~~~~~i~~~~---~~~~~~~--~~~el~ali~~a~l~I~~D-----TG 259 (325)
..+.+.+.+..+.+++ .++++|...+ .+..+.+.... .++.+.. ...++..+++.||++|.+- +.
T Consensus 217 ~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~ 296 (375)
T cd03821 217 GLDLLIEAFAKLAERFPDWHLVIAGPDEGGYRAELKQIAAALGLEDRVTFTGMLYGEDKAAALADADLFVLPSHSENFGI 296 (375)
T ss_pred CHHHHHHHHHHhhhhcCCeEEEEECCCCcchHHHHHHHHHhcCccceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCc
Confidence 4567778888887643 6777775332 23333332222 2232222 2258999999999998765 34
Q ss_pred HHHHHHhcCCCEEEE
Q 020516 260 AIQLANAREKPSIAL 274 (325)
Q Consensus 260 p~HlAaAl~~P~iaL 274 (325)
.+-=|.+.|+|+|+-
T Consensus 297 ~~~Eama~G~PvI~~ 311 (375)
T cd03821 297 VVAEALACGTPVVTT 311 (375)
T ss_pred HHHHHHhcCCCEEEc
Confidence 456689999999983
No 83
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=85.11 E-value=17 Score=33.86 Aligned_cols=103 Identities=17% Similarity=0.076 Sum_probs=57.3
Q ss_pred HHHcCCCCCCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCC---CEEEecCCCc-----hHHHHhHHcc-
Q 020516 160 YKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR---PLFVIPHEKE-----REGVEDVVGD- 230 (325)
Q Consensus 160 ~~~~~~~~~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~---~vvl~g~~~e-----~~~~~~i~~~- 230 (325)
..+.++.++..++++.| +..+ .| ..+...+.+..+.+.. .++++|+..+ .+..+++.+.
T Consensus 181 ~~~~~~~~~~~~i~~vg-rl~~---------~K--g~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~ 248 (372)
T cd03792 181 LEKYGIDPERPYITQVS-RFDP---------WK--DPFGVIDAYRKVKERVPDPQLVLVGSGATDDPEGWIVYEEVLEYA 248 (372)
T ss_pred HHHhCCCCCCcEEEEEe-cccc---------cc--CcHHHHHHHHHHHhhCCCCEEEEEeCCCCCCchhHHHHHHHHHHh
Confidence 34466655555666654 2221 22 3345566665665442 6777775321 2223333321
Q ss_pred --CCCccccc----ChHHHHHHHHhCCEEEecCc----h-HHHHHHhcCCCEEEE
Q 020516 231 --DASIVFIT----TPGQLAALINDSAGVIATNT----A-AIQLANAREKPSIAL 274 (325)
Q Consensus 231 --~~~~~~~~----~~~el~ali~~a~l~I~~DT----G-p~HlAaAl~~P~iaL 274 (325)
..++.+.. +..++.++++.||++|.+-. | .+==|.|.|+|+|+-
T Consensus 249 ~~~~~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s 303 (372)
T cd03792 249 EGDPDIHVLTLPPVSDLEVNALQRASTVVLQKSIREGFGLTVTEALWKGKPVIAG 303 (372)
T ss_pred CCCCCeEEEecCCCCHHHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcCCCEEEc
Confidence 12232222 23688999999999997643 3 344478999999984
No 84
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=84.68 E-value=9.9 Score=36.82 Aligned_cols=77 Identities=16% Similarity=0.173 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhhcCCCEEEecCCCchHHHHhHHccCCCccccc--ChHHHHHHHHhCCEEEecCc--h---HHHHHHhcC
Q 020516 196 IQVWAEIANGLREFRPLFVIPHEKEREGVEDVVGDDASIVFIT--TPGQLAALINDSAGVIATNT--A---AIQLANARE 268 (325)
Q Consensus 196 ~e~~~~l~~~l~~~~~vvl~g~~~e~~~~~~i~~~~~~~~~~~--~~~el~ali~~a~l~I~~DT--G---p~HlAaAl~ 268 (325)
.+.+.++++.+. ...++++|...+++.+++..... ++.+.. ...++..+++.||++|.... | .+==|.|.|
T Consensus 278 ~~~li~a~~~~~-~~~l~ivG~G~~~~~l~~~~~~~-~V~f~G~v~~~ev~~~~~~aDv~V~pS~~E~~g~~vlEAmA~G 355 (465)
T PLN02871 278 LDFLKRVMERLP-GARLAFVGDGPYREELEKMFAGT-PTVFTGMLQGDELSQAYASGDVFVMPSESETLGFVVLEAMASG 355 (465)
T ss_pred HHHHHHHHHhCC-CcEEEEEeCChHHHHHHHHhccC-CeEEeccCCHHHHHHHHHHCCEEEECCcccccCcHHHHHHHcC
Confidence 445555554442 22677787655566666555433 333222 22689999999999997642 1 133578999
Q ss_pred CCEEEE
Q 020516 269 KPSIAL 274 (325)
Q Consensus 269 ~P~iaL 274 (325)
+|+|+-
T Consensus 356 ~PVI~s 361 (465)
T PLN02871 356 VPVVAA 361 (465)
T ss_pred CCEEEc
Confidence 999974
No 85
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=84.52 E-value=11 Score=34.59 Aligned_cols=89 Identities=18% Similarity=0.166 Sum_probs=54.4
Q ss_pred CCeeecCHHHHHHHHHHHHHcCCCCCCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCCCEEEecCCCchH
Q 020516 143 PLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFRPLFVIPHEKERE 222 (325)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~~vvl~g~~~e~~ 222 (325)
.+-..+++++.+...+.+.+. +....+|+++ ||- + +..|.+.|.+|++.+++.+..+++.... +
T Consensus 106 ~~Gp~is~~~~~~~l~~~~~~-l~~~d~Vvls-GSl-P-----------~g~~~d~y~~li~~~~~~g~~vilD~Sg--~ 169 (310)
T COG1105 106 FPGPEISEAELEQFLEQLKAL-LESDDIVVLS-GSL-P-----------PGVPPDAYAELIRILRQQGAKVILDTSG--E 169 (310)
T ss_pred CCCCCCCHHHHHHHHHHHHHh-cccCCEEEEe-CCC-C-----------CCCCHHHHHHHHHHHHhcCCeEEEECCh--H
Confidence 344457777776655555442 3445677665 332 2 2389999999999999988555564332 2
Q ss_pred HHHhHHccCCCcccccChHHHHHHHH
Q 020516 223 GVEDVVGDDASIVFITTPGQLAALIN 248 (325)
Q Consensus 223 ~~~~i~~~~~~~~~~~~~~el~ali~ 248 (325)
...+..+..|.++ +.+..|+.+++.
T Consensus 170 ~L~~~L~~~P~lI-KPN~~EL~~~~g 194 (310)
T COG1105 170 ALLAALEAKPWLI-KPNREELEALFG 194 (310)
T ss_pred HHHHHHccCCcEE-ecCHHHHHHHhC
Confidence 3334454457665 555567766644
No 86
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=83.33 E-value=49 Score=32.59 Aligned_cols=78 Identities=10% Similarity=0.126 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhhcCC---CEEEecCCCchHHHHhHHccCC--C-cccccChHHHHHHHHhCCEEEecCc----hHHHH-H
Q 020516 196 IQVWAEIANGLREFR---PLFVIPHEKEREGVEDVVGDDA--S-IVFITTPGQLAALINDSAGVIATNT----AAIQL-A 264 (325)
Q Consensus 196 ~e~~~~l~~~l~~~~---~vvl~g~~~e~~~~~~i~~~~~--~-~~~~~~~~el~ali~~a~l~I~~DT----Gp~Hl-A 264 (325)
.+...+.+..+.++. .++++|+..+.+.++++.+... + +.+.. ..++..+++.||++|.+-. |...+ |
T Consensus 334 ~~~li~A~~~l~~~~p~~~l~i~G~G~~~~~l~~~i~~~~l~~~V~f~G-~~~~~~~~~~adv~v~pS~~Egfgl~~lEA 412 (500)
T TIGR02918 334 IDWLVKAVVKAKKSVPELTFDIYGEGGEKQKLQKIINENQAQDYIHLKG-HRNLSEVYKDYELYLSASTSEGFGLTLMEA 412 (500)
T ss_pred HHHHHHHHHHHHhhCCCeEEEEEECchhHHHHHHHHHHcCCCCeEEEcC-CCCHHHHHHhCCEEEEcCccccccHHHHHH
Confidence 344445444554443 5667776666666666655432 2 22122 2467889999999998653 34433 6
Q ss_pred HhcCCCEEEE
Q 020516 265 NAREKPSIAL 274 (325)
Q Consensus 265 aAl~~P~iaL 274 (325)
-|.|+|+|+-
T Consensus 413 ma~G~PVI~~ 422 (500)
T TIGR02918 413 VGSGLGMIGF 422 (500)
T ss_pred HHhCCCEEEe
Confidence 8999999995
No 87
>PRK00654 glgA glycogen synthase; Provisional
Probab=83.23 E-value=19 Score=34.99 Aligned_cols=80 Identities=10% Similarity=0.013 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHhhcCC-CEEEecCCCc--hHHHHhHHccCCC-ccc-ccChHH-HHHHHHhCCEEEecC-----chHHHH
Q 020516 195 PIQVWAEIANGLREFR-PLFVIPHEKE--REGVEDVVGDDAS-IVF-ITTPGQ-LAALINDSAGVIATN-----TAAIQL 263 (325)
Q Consensus 195 p~e~~~~l~~~l~~~~-~vvl~g~~~e--~~~~~~i~~~~~~-~~~-~~~~~e-l~ali~~a~l~I~~D-----TGp~Hl 263 (325)
..+...+.+..+.++. +++++|+... ++..+++....+. +.+ ..-..+ ...+++.||++|-+. .-..--
T Consensus 296 G~~~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~~~~aDv~v~PS~~E~~gl~~lE 375 (466)
T PRK00654 296 GLDLVLEALPELLEQGGQLVLLGTGDPELEEAFRALAARYPGKVGVQIGYDEALAHRIYAGADMFLMPSRFEPCGLTQLY 375 (466)
T ss_pred ChHHHHHHHHHHHhcCCEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHhhCCEEEeCCCCCCchHHHHH
Confidence 4556777777776555 7888876432 3445555555543 221 111234 468899999999863 235678
Q ss_pred HHhcCCCEEEE
Q 020516 264 ANAREKPSIAL 274 (325)
Q Consensus 264 AaAl~~P~iaL 274 (325)
|.+.|+|+|+-
T Consensus 376 Ama~G~p~V~~ 386 (466)
T PRK00654 376 ALRYGTLPIVR 386 (466)
T ss_pred HHHCCCCEEEe
Confidence 89999999983
No 88
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=82.40 E-value=47 Score=31.73 Aligned_cols=245 Identities=12% Similarity=0.085 Sum_probs=121.7
Q ss_pred hhHhhhCCCCEEEEEe-ccCchhh-hhhCCC--CceEEEecCCCCCCCchhHHHHHHHHHhcCCcEEEEecCCchHHHHH
Q 020516 2 YLHITRYPGVLIDVIA-SARGKQT-FELNKN--VRWANVYDLDDDWPEPAEYTDILGVMKNRYYDMVLSTKLAGLGHAAF 77 (325)
Q Consensus 2 ~~Lk~~~P~a~I~~l~-~~~~~~l-~~~~p~--Vd~v~~~~~~~~~~~~~~~~~l~~~Lr~~~yDl~i~~~~~~~~~~~~ 77 (325)
++|++.||+..|.+-+ .+-.+.. -+..+. ++...++|.+ ...-+-|+..++|++|.+... ...+++
T Consensus 70 ~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~~v~h~YlP~D~~---------~~v~rFl~~~~P~l~Ii~EtE-lWPnli 139 (419)
T COG1519 70 RALRERFPDLRILVTTMTPTGAERAAALFGDSVIHQYLPLDLP---------IAVRRFLRKWRPKLLIIMETE-LWPNLI 139 (419)
T ss_pred HHHHHhCCCCCEEEEecCccHHHHHHHHcCCCeEEEecCcCch---------HHHHHHHHhcCCCEEEEEecc-ccHHHH
Confidence 6799999999998876 3333333 344444 4455555532 233455778999999999866 444444
Q ss_pred HH--HhCCCceeecc---cCCcccCCcc-cccc---eeccCCCcchhhhHHHHHHHHHHHcCCCCCCCCCCCCCCCeeec
Q 020516 78 LF--MTTARDRVSYI---YPNVNAAGAG-LLLS---ETFTAESMNLSERGYNMYEQMVDWLGRPFRSVPRHPVPPLRVSI 148 (325)
Q Consensus 78 ~~--~~~a~~rig~~---~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~ll~~lg~~~~~~~~~~~~~~~~~~ 148 (325)
.. ..|+|.-+--. ..+..++.+. .++. ..+..--.+. +--.+|+ ..||+.. ....-.-...+..
T Consensus 140 ~e~~~~~~p~~LvNaRLS~rS~~~y~k~~~~~~~~~~~i~li~aQs-e~D~~Rf----~~LGa~~--v~v~GNlKfd~~~ 212 (419)
T COG1519 140 NELKRRGIPLVLVNARLSDRSFARYAKLKFLARLLFKNIDLILAQS-EEDAQRF----RSLGAKP--VVVTGNLKFDIEP 212 (419)
T ss_pred HHHHHcCCCEEEEeeeechhhhHHHHHHHHHHHHHHHhcceeeecC-HHHHHHH----HhcCCcc--eEEecceeecCCC
Confidence 33 34666433111 0111111110 0110 0111000000 1112333 4466621 0001111223333
Q ss_pred CHHHHHHHHHHHHHcCCCCCCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCC---CEEEe-cCCCchHHH
Q 020516 149 SRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR---PLFVI-PHEKEREGV 224 (325)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~---~vvl~-g~~~e~~~~ 224 (325)
++...........+.+.. .+ +.+.. |++.. -.|-+.++.+.|.++. -+|++ -+|+--+.+
T Consensus 213 ~~~~~~~~~~~r~~l~~~-r~-v~iaa-STH~G-------------Eeei~l~~~~~l~~~~~~~llIlVPRHpERf~~v 276 (419)
T COG1519 213 PPQLAAELAALRRQLGGH-RP-VWVAA-STHEG-------------EEEIILDAHQALKKQFPNLLLILVPRHPERFKAV 276 (419)
T ss_pred ChhhHHHHHHHHHhcCCC-Cc-eEEEe-cCCCc-------------hHHHHHHHHHHHHhhCCCceEEEecCChhhHHHH
Confidence 344444444444444332 34 33332 33321 2467889988888877 23334 357655666
Q ss_pred HhHHccC------------C----CcccccChHHHHHHHHhCCE-EEecC---chH--HHHHHhcCCCEEEEecCCCCC
Q 020516 225 EDVVGDD------------A----SIVFITTPGQLAALINDSAG-VIATN---TAA--IQLANAREKPSIALFSSELKG 281 (325)
Q Consensus 225 ~~i~~~~------------~----~~~~~~~~~el~ali~~a~l-~I~~D---TGp--~HlAaAl~~P~iaLfg~t~p~ 281 (325)
+++.... + ++....+.||+..+..-+|+ |||+. -|- .==++++|+|+| |||...+
T Consensus 277 ~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN~LEpa~~~~pvi--~Gp~~~N 353 (419)
T COG1519 277 ENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHNPLEPAAFGTPVI--FGPYTFN 353 (419)
T ss_pred HHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCChhhHHHcCCCEE--eCCcccc
Confidence 6665322 0 11112345999999999998 56542 121 113688898874 7877654
No 89
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=81.36 E-value=14 Score=28.78 Aligned_cols=77 Identities=10% Similarity=0.035 Sum_probs=46.1
Q ss_pred hHhhhCCCCEEEEEeccCchhhhhhCCCCceEEEecCCCC-CCCchhHHHHHHHHHhcCCcEEEEecCCc--hHHHHHHH
Q 020516 3 LHITRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDD-WPEPAEYTDILGVMKNRYYDMVLSTKLAG--LGHAAFLF 79 (325)
Q Consensus 3 ~Lk~~~P~a~I~~l~~~~~~~l~~~~p~Vd~v~~~~~~~~-~~~~~~~~~l~~~Lr~~~yDl~i~~~~~~--~~~~~~~~ 79 (325)
.|+++ +.++++++......-.+....+ +++.++.... ........++.+.+++++||++......+ ....+..+
T Consensus 19 ~L~~~--g~~V~ii~~~~~~~~~~~~~~i-~~~~~~~~~k~~~~~~~~~~l~k~ik~~~~DvIh~h~~~~~~~~~~l~~~ 95 (139)
T PF13477_consen 19 ELKKR--GYDVHIITPRNDYEKYEIIEGI-KVIRLPSPRKSPLNYIKYFRLRKIIKKEKPDVIHCHTPSPYGLFAMLAKK 95 (139)
T ss_pred HHHHC--CCEEEEEEcCCCchhhhHhCCe-EEEEecCCCCccHHHHHHHHHHHHhccCCCCEEEEecCChHHHHHHHHHH
Confidence 34554 7899999986665445555666 5666652221 01111244677778999999998665442 23344555
Q ss_pred HhC
Q 020516 80 MTT 82 (325)
Q Consensus 80 ~~~ 82 (325)
+.+
T Consensus 96 ~~~ 98 (139)
T PF13477_consen 96 LLK 98 (139)
T ss_pred HcC
Confidence 666
No 90
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=80.76 E-value=21 Score=34.45 Aligned_cols=80 Identities=10% Similarity=0.095 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHhhcCC-CEEEecCCCc--hHHHHhHHccCC-Cccccc--ChHHHHHHHHhCCEEEecC----ch-HHHH
Q 020516 195 PIQVWAEIANGLREFR-PLFVIPHEKE--REGVEDVVGDDA-SIVFIT--TPGQLAALINDSAGVIATN----TA-AIQL 263 (325)
Q Consensus 195 p~e~~~~l~~~l~~~~-~vvl~g~~~e--~~~~~~i~~~~~-~~~~~~--~~~el~ali~~a~l~I~~D----TG-p~Hl 263 (325)
..+...+.+..+.++. .++++|...+ .+..+++....+ ++.+.. ...++..+++.||++|.+- .| ..--
T Consensus 310 g~~~li~a~~~l~~~~~~lvi~G~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lE 389 (476)
T cd03791 310 GIDLLLEALPELLELGGQLVILGSGDPEYEEALRELAARYPGRVAVLIGYDEALAHLIYAGADFFLMPSRFEPCGLTQMY 389 (476)
T ss_pred cHHHHHHHHHHHHHcCcEEEEEecCCHHHHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhCCEEECCCCCCCCcHHHHH
Confidence 4567778887777666 7777775432 234444444432 332121 2245567999999999763 23 3456
Q ss_pred HHhcCCCEEEE
Q 020516 264 ANAREKPSIAL 274 (325)
Q Consensus 264 AaAl~~P~iaL 274 (325)
|.+.|+|+|+-
T Consensus 390 Ama~G~pvI~~ 400 (476)
T cd03791 390 AMRYGTVPIVR 400 (476)
T ss_pred HhhCCCCCEEC
Confidence 89999999973
No 91
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=80.70 E-value=20 Score=33.70 Aligned_cols=34 Identities=18% Similarity=-0.053 Sum_probs=27.3
Q ss_pred HHHHHHHHhCCEEEecCc-----hHHHHHHhcCCCEEEE
Q 020516 241 GQLAALINDSAGVIATNT-----AAIQLANAREKPSIAL 274 (325)
Q Consensus 241 ~el~ali~~a~l~I~~DT-----Gp~HlAaAl~~P~iaL 274 (325)
.++..+++.||++|.... -.+-=|-|.|+|+|+-
T Consensus 292 ~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas 330 (396)
T cd03818 292 DQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGS 330 (396)
T ss_pred HHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEc
Confidence 689999999999986542 1456789999999984
No 92
>COG4261 Predicted acyltransferase [General function prediction only]
Probab=79.92 E-value=1.3 Score=38.70 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=21.9
Q ss_pred chHHHHHHhcCCCEEEEecCCCCCcc
Q 020516 258 TAAIQLANAREKPSIALFSSELKGRL 283 (325)
Q Consensus 258 TGp~HlAaAl~~P~iaLfg~t~p~~~ 283 (325)
+||.|||+++++|++-+||=-.-.+|
T Consensus 223 qgP~ilAaaLk~PV~l~fgLy~~~~y 248 (309)
T COG4261 223 QGPFILAAALKCPVNLIFGLYQHGKY 248 (309)
T ss_pred CCHHHHHHHhCCCeEEEEEeeeCCee
Confidence 79999999999999999996554443
No 93
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=79.42 E-value=7.9 Score=35.83 Aligned_cols=79 Identities=10% Similarity=0.083 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhhcCC---CEEEecCCCchHHHHhHHccC--C-CcccccChHHHHHHHHhCCEEEecC-----chHHHHH
Q 020516 196 IQVWAEIANGLREFR---PLFVIPHEKEREGVEDVVGDD--A-SIVFITTPGQLAALINDSAGVIATN-----TAAIQLA 264 (325)
Q Consensus 196 ~e~~~~l~~~l~~~~---~vvl~g~~~e~~~~~~i~~~~--~-~~~~~~~~~el~ali~~a~l~I~~D-----TGp~HlA 264 (325)
.+...+.+..+.++. .++++|...+.+..++..... . .+.+.....++..+++.||++|..- +.++-=|
T Consensus 219 ~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEA 298 (372)
T cd04949 219 LDQLIKAFAKVVKQVPDATLDIYGYGDEEEKLKELIEELGLEDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEA 298 (372)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEEeCchHHHHHHHHHHcCCcceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHH
Confidence 445566666665543 567777655555444444322 2 2221222357899999999999754 3345558
Q ss_pred HhcCCCEEEE
Q 020516 265 NAREKPSIAL 274 (325)
Q Consensus 265 aAl~~P~iaL 274 (325)
-+.|+|+|+-
T Consensus 299 ma~G~PvI~~ 308 (372)
T cd04949 299 LSHGLPVISY 308 (372)
T ss_pred HhCCCCEEEe
Confidence 9999999984
No 94
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=78.34 E-value=13 Score=33.57 Aligned_cols=79 Identities=18% Similarity=0.149 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHhhcCC---CEEEecCCC-chH-HHHhHHc-cC-CCccccc--ChHHHHHHHHhCCEEEecC-----chH
Q 020516 195 PIQVWAEIANGLREFR---PLFVIPHEK-ERE-GVEDVVG-DD-ASIVFIT--TPGQLAALINDSAGVIATN-----TAA 260 (325)
Q Consensus 195 p~e~~~~l~~~l~~~~---~vvl~g~~~-e~~-~~~~i~~-~~-~~~~~~~--~~~el~ali~~a~l~I~~D-----TGp 260 (325)
..+.+.+.+..+.+.. .++++|+.. +.+ ..+.+.. .. .++.... +..++..+++.||++|.+- +..
T Consensus 209 ~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~ps~~e~~~~~ 288 (365)
T cd03809 209 NLERLLEAFARLPAKGPDPKLVIVGKRGWLNEELLARLRELGLGDRVRFLGYVSDEELAALYRGARAFVFPSLYEGFGLP 288 (365)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEecCCccccHHHHHHHHHcCCCCeEEECCCCChhHHHHHHhhhhhhcccchhccCCCC
Confidence 5678888888887763 678887543 222 2222211 11 2222121 2368999999999988652 334
Q ss_pred HHHHHhcCCCEEE
Q 020516 261 IQLANAREKPSIA 273 (325)
Q Consensus 261 ~HlAaAl~~P~ia 273 (325)
+==|.+.|+|+|+
T Consensus 289 ~~Ea~a~G~pvI~ 301 (365)
T cd03809 289 VLEAMACGTPVIA 301 (365)
T ss_pred HHHHhcCCCcEEe
Confidence 5568899999998
No 95
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=78.13 E-value=17 Score=35.79 Aligned_cols=129 Identities=5% Similarity=-0.083 Sum_probs=73.7
Q ss_pred CCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCC-CEEEecCCCchHHHHhHHccCC-CcccccChHHHHH
Q 020516 168 GKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFVIPHEKEREGVEDVVGDDA-SIVFITTPGQLAA 245 (325)
Q Consensus 168 ~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~-~vvl~g~~~e~~~~~~i~~~~~-~~~~~~~~~el~a 245 (325)
++.|.+..|+.... ...|.+....+++.+.+.. .+++-.+++..+ ...| |+....-.. -.+
T Consensus 296 ~g~V~vS~GS~~~~----------~~~~~~~~~~~l~a~~~l~~~viw~~~~~~~~------~~~p~Nv~i~~w~P-q~~ 358 (507)
T PHA03392 296 NGVVYVSFGSSIDT----------NDMDNEFLQMLLRTFKKLPYNVLWKYDGEVEA------INLPANVLTQKWFP-QRA 358 (507)
T ss_pred CcEEEEECCCCCcC----------CCCCHHHHHHHHHHHHhCCCeEEEEECCCcCc------ccCCCceEEecCCC-HHH
Confidence 35777877775421 2368888888888887665 666554432221 1122 332111112 256
Q ss_pred HH--HhCCEEEecCc-hHHHHHHhcCCCEEEEecCCCCCccccCCCCC-CceeeeeCCCCCCCCCCHHHHHHHHHHHH
Q 020516 246 LI--NDSAGVIATNT-AAIQLANAREKPSIALFSSELKGRLFVPNAEE-KKCTVISSRTGKLIDTPVEAVLNAMQIFN 319 (325)
Q Consensus 246 li--~~a~l~I~~DT-Gp~HlAaAl~~P~iaLfg~t~p~~~~pp~~~~-~~~~~~~~~~~~m~~I~~~~V~~~~~~~~ 319 (325)
++ .++++||++.. |.++=|...|||+|++=--.+.....- .... +--+.+ ...+++++++.+++.+++
T Consensus 359 lL~hp~v~~fItHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~-rv~~~G~G~~l-----~~~~~t~~~l~~ai~~vl 430 (507)
T PHA03392 359 VLKHKNVKAFVTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTN-KYVELGIGRAL-----DTVTVSAAQLVLAIVDVI 430 (507)
T ss_pred HhcCCCCCEEEecCCcccHHHHHHcCCCEEECCCCccHHHHHH-HHHHcCcEEEe-----ccCCcCHHHHHHHHHHHh
Confidence 77 56999999875 788999999999998522111110000 0000 001111 134788999999988775
No 96
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=77.26 E-value=17 Score=34.70 Aligned_cols=114 Identities=7% Similarity=0.021 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHhhcC--------C-CEEEecCCCchHHHHhHHccC--CCccccc---ChHHHHHHHHhCCEEEecCc--
Q 020516 195 PIQVWAEIANGLREF--------R-PLFVIPHEKEREGVEDVVGDD--ASIVFIT---TPGQLAALINDSAGVIATNT-- 258 (325)
Q Consensus 195 p~e~~~~l~~~l~~~--------~-~vvl~g~~~e~~~~~~i~~~~--~~~~~~~---~~~el~ali~~a~l~I~~DT-- 258 (325)
..+...+.+..+.+. . .++++|+..+++.+++..+.. .+..+.. ...++..+++.||++|+...
T Consensus 246 ~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G~~~~~l~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~aDv~v~~~~~~ 325 (415)
T cd03816 246 DFGILLDALVAYEKSAATGPKLPKLLCIITGKGPLKEKYLERIKELKLKKVTIRTPWLSAEDYPKLLASADLGVSLHTSS 325 (415)
T ss_pred CHHHHHHHHHHHHHhhcccccCCCEEEEEEecCccHHHHHHHHHHcCCCcEEEEcCcCCHHHHHHHHHhCCEEEEccccc
Confidence 455777777776531 2 566777655666666555433 3333222 23789999999999985321
Q ss_pred -h---H--HHHHHhcCCCEEEEecCCCCCccccCCCCCCceeeeeCCCCCCCCCCHHHHHHHHHHHHHh
Q 020516 259 -A---A--IQLANAREKPSIALFSSELKGRLFVPNAEEKKCTVISSRTGKLIDTPVEAVLNAMQIFNES 321 (325)
Q Consensus 259 -G---p--~HlAaAl~~P~iaLfg~t~p~~~~pp~~~~~~~~~~~~~~~~m~~I~~~~V~~~~~~~~~~ 321 (325)
| | +-=|-|.|+|+|+-=.+..++- .- +. .+-.+ . + ++++..+++.++..+
T Consensus 326 ~~~~~p~~~~Eama~G~PVI~s~~~~~~ei-v~---~~-~~G~l------v-~-d~~~la~~i~~ll~~ 381 (415)
T cd03816 326 SGLDLPMKVVDMFGCGLPVCALDFKCIDEL-VK---HG-ENGLV------F-G-DSEELAEQLIDLLSN 381 (415)
T ss_pred cccCCcHHHHHHHHcCCCEEEeCCCCHHHH-hc---CC-CCEEE------E-C-CHHHHHHHHHHHHhc
Confidence 2 2 3446789999999322222111 11 11 11111 1 2 678888888877543
No 97
>PLN02275 transferase, transferring glycosyl groups
Probab=76.83 E-value=14 Score=34.66 Aligned_cols=65 Identities=9% Similarity=0.087 Sum_probs=42.1
Q ss_pred CEEEecCCCchHHHHhHHccC--CCccccc---ChHHHHHHHHhCCEEEecC---ch---H--HHHHHhcCCCEEEEe
Q 020516 211 PLFVIPHEKEREGVEDVVGDD--ASIVFIT---TPGQLAALINDSAGVIATN---TA---A--IQLANAREKPSIALF 275 (325)
Q Consensus 211 ~vvl~g~~~e~~~~~~i~~~~--~~~~~~~---~~~el~ali~~a~l~I~~D---TG---p--~HlAaAl~~P~iaLf 275 (325)
.++++|...+++.+++..+.. .+..+.. ...++..+++.||++|... .| | +==|-|.|+|+|+--
T Consensus 263 ~l~ivG~G~~~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~ 340 (371)
T PLN02275 263 LFIITGKGPQKAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVS 340 (371)
T ss_pred EEEEEeCCCCHHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEEec
Confidence 677778666666666555432 3433222 2378999999999999531 11 2 333789999999953
No 98
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=76.82 E-value=63 Score=30.96 Aligned_cols=73 Identities=15% Similarity=0.050 Sum_probs=43.3
Q ss_pred HHHHhhcCC-CEEEecCCC-----chHHHHhHHccCCCcccc--cChHHHHHHH--HhCCEEEecCchHHHHHHhcCCCE
Q 020516 202 IANGLREFR-PLFVIPHEK-----EREGVEDVVGDDASIVFI--TTPGQLAALI--NDSAGVIATNTAAIQLANAREKPS 271 (325)
Q Consensus 202 l~~~l~~~~-~vvl~g~~~-----e~~~~~~i~~~~~~~~~~--~~~~el~ali--~~a~l~I~~DTGp~HlAaAl~~P~ 271 (325)
+++.|.+-+ .++.++++. ..+..+.+ ... +.... ....+...++ ..+|++||| |+..++|..+|+|.
T Consensus 295 la~~L~elGmevv~~~t~~~~~~~~~~~~~~l-~~~-~~~v~~~~~~~~~~~~~~~~~pDl~Ig~-s~~~~~a~~~giP~ 371 (416)
T cd01980 295 VARLLIESGAEVPYVSTSIPKTSLSAPDYEWL-SAL-GVEVRYRKSLEDDIAAVEEYRPDLAIGT-TPLVQYAKEKGIPA 371 (416)
T ss_pred HHHHHHHcCCEEEEEecCCCChhhhHHHHHHH-Hhc-CCccccCCCHHHHHHHHhhcCCCEEEeC-ChhhHHHHHhCCCE
Confidence 667777767 666665542 22222222 212 11101 1222233332 379999999 88999999999999
Q ss_pred EEEecC
Q 020516 272 IALFSS 277 (325)
Q Consensus 272 iaLfg~ 277 (325)
+-+.-|
T Consensus 372 ~r~~~~ 377 (416)
T cd01980 372 LYYTNL 377 (416)
T ss_pred EEecCh
Confidence 887655
No 99
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=76.07 E-value=12 Score=33.62 Aligned_cols=82 Identities=13% Similarity=0.123 Sum_probs=47.5
Q ss_pred HHHHHHhhcCC-CEEEecCCCchHHHHhHHcc----CCCccccc--ChHHHHHHHHhCCEEEecC----c-h-HHHHHHh
Q 020516 200 AEIANGLREFR-PLFVIPHEKEREGVEDVVGD----DASIVFIT--TPGQLAALINDSAGVIATN----T-A-AIQLANA 266 (325)
Q Consensus 200 ~~l~~~l~~~~-~vvl~g~~~e~~~~~~i~~~----~~~~~~~~--~~~el~ali~~a~l~I~~D----T-G-p~HlAaA 266 (325)
..+++.+.+.. .++++|...+.+........ ..++.+.. +..++..+++.+|++|.+- + | .+-=|-|
T Consensus 187 ~~li~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma 266 (335)
T cd03802 187 HLAIRAARRAGIPLKLAGPVSDPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARALLFPILWEEPFGLVMIEAMA 266 (335)
T ss_pred HHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcEEEeCCcccCCcchHHHHHHh
Confidence 34444444444 77777765554443332221 12333222 2357899999999998653 2 2 2444899
Q ss_pred cCCCEEEEecCCCCC
Q 020516 267 REKPSIALFSSELKG 281 (325)
Q Consensus 267 l~~P~iaLfg~t~p~ 281 (325)
.|+|+|+-=.+..+.
T Consensus 267 ~G~PvI~~~~~~~~e 281 (335)
T cd03802 267 CGTPVIAFRRGAVPE 281 (335)
T ss_pred cCCCEEEeCCCCchh
Confidence 999999865444443
No 100
>TIGR00550 nadA quinolinate synthetase complex, A subunit. This protein, termed NadA, plays a role in the synthesis of pyridine, a precursor to NAD. The quinolinate synthetase complex consists of A protein (this protein) and B protein. B protein converts L-aspartate to iminoaspartate, an unstable reaction product which in the absence of A protein is spontaneously hydrolyzed to form oxaloacetate. The A protein, NadA, converts iminoaspartate to quinolate.
Probab=75.57 E-value=18 Score=33.29 Aligned_cols=119 Identities=13% Similarity=0.109 Sum_probs=65.7
Q ss_pred HHHHHHHHHhhcCCCEEE--ecC--C----CchHHHHhHHccCCCcccccChHHHHHHHHhCCEEEecCchHHHHHHhcC
Q 020516 197 QVWAEIANGLREFRPLFV--IPH--E----KEREGVEDVVGDDASIVFITTPGQLAALINDSAGVIATNTAAIQLANARE 268 (325)
Q Consensus 197 e~~~~l~~~l~~~~~vvl--~g~--~----~e~~~~~~i~~~~~~~~~~~~~~el~ali~~a~l~I~~DTGp~HlAaAl~ 268 (325)
..+++-++.|.....+++ ..| + -..+.+.++.+..|+..+++-+...+++.+.|| +||.-++...++....
T Consensus 62 ~fMae~a~~l~p~k~vilp~~~a~C~~a~~~~~~~i~~lk~~~Pda~vvah~n~~aeVka~aD-~v~TSsna~~~v~~~~ 140 (310)
T TIGR00550 62 HFMGETAKILNPEKTVLMPDLGAGCSMADMCPPEEFKKLKERHPDAFVVTYVNTTAEVKALAD-IVCTSSNAVKVVEHLD 140 (310)
T ss_pred chHHHHHHHhCCCCEEEccCCCCCCccccccCHHHHHHHHHHCCCCEEEEECCCCHHHHHhCC-EEEchHHHHHHHHhcc
Confidence 378888887766554554 221 1 123456677777887554443334445556666 6777778888887774
Q ss_pred CC-EEEEecCC-CCCccccCCCCCCceeeeeCCCCC--CCCCCHHHHHHHHHH
Q 020516 269 KP-SIALFSSE-LKGRLFVPNAEEKKCTVISSRTGK--LIDTPVEAVLNAMQI 317 (325)
Q Consensus 269 ~P-~iaLfg~t-~p~~~~pp~~~~~~~~~~~~~~~~--m~~I~~~~V~~~~~~ 317 (325)
.. -..||+|. .-..+.- ...+.+.+.......| |..+++++|.++..+
T Consensus 141 ~~~~~Iif~pd~~L~~~~~-~~p~k~~i~~~~~g~C~vh~~~t~e~v~~~~~~ 192 (310)
T TIGR00550 141 KDNKKILFLPDKNLGRYVQ-EQTLKDMILWPEQGHCSVHEKFTTEDLERLKEK 192 (310)
T ss_pred cCCCEEEEECchHHHHHHH-hCCCCEEEeCCCCCCCcChhhCCHHHHHHHHHH
Confidence 31 23556654 2222211 1011122222112233 788999999988776
No 101
>PRK14098 glycogen synthase; Provisional
Probab=74.68 E-value=50 Score=32.40 Aligned_cols=80 Identities=14% Similarity=0.128 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHhhcCC-CEEEecCCCc--hHHHHhHHccCCC-ccccc--ChHHHHHHHHhCCEEEecCc----hH-HHH
Q 020516 195 PIQVWAEIANGLREFR-PLFVIPHEKE--REGVEDVVGDDAS-IVFIT--TPGQLAALINDSAGVIATNT----AA-IQL 263 (325)
Q Consensus 195 p~e~~~~l~~~l~~~~-~vvl~g~~~e--~~~~~~i~~~~~~-~~~~~--~~~el~ali~~a~l~I~~DT----Gp-~Hl 263 (325)
..+...+.+..+.+.. +++++|+..+ ++..+++.+..++ +.+.. +..++..+++.||++|.+-- |. .-.
T Consensus 321 G~d~li~a~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a~aDi~l~PS~~E~~Gl~~lE 400 (489)
T PRK14098 321 GAELLAESLEKLVELDIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIAGLDMLLMPGKIESCGMLQMF 400 (489)
T ss_pred cHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHHhCCEEEeCCCCCCchHHHHH
Confidence 4567777777776555 7888886432 3455666555543 32221 22567899999999996531 22 235
Q ss_pred HHhcCCCEEEE
Q 020516 264 ANAREKPSIAL 274 (325)
Q Consensus 264 AaAl~~P~iaL 274 (325)
|-+.|+|+|+-
T Consensus 401 Ama~G~ppVv~ 411 (489)
T PRK14098 401 AMSYGTIPVAY 411 (489)
T ss_pred HHhCCCCeEEe
Confidence 78899988874
No 102
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=74.40 E-value=15 Score=35.82 Aligned_cols=78 Identities=18% Similarity=0.165 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHhhcCC---CEEEecCC-CchH---HHHhHHccC---CCcccccChHHHHHHHHhCCEEEecC-----ch
Q 020516 195 PIQVWAEIANGLREFR---PLFVIPHE-KERE---GVEDVVGDD---ASIVFITTPGQLAALINDSAGVIATN-----TA 259 (325)
Q Consensus 195 p~e~~~~l~~~l~~~~---~vvl~g~~-~e~~---~~~~i~~~~---~~~~~~~~~~el~ali~~a~l~I~~D-----TG 259 (325)
..+.+.+.+..+.++. .++++|.. ++.+ .++++.+.. .++.+.. ..++..+++.+|++|-+- ..
T Consensus 307 g~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G-~~~v~~~l~~aDv~vlpS~~Eg~p~ 385 (475)
T cd03813 307 DIKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTG-FQNVKEYLPKLDVLVLTSISEGQPL 385 (475)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcC-CccHHHHHHhCCEEEeCchhhcCCh
Confidence 4456666666665543 66777654 3333 334444332 2333222 357889999999998654 24
Q ss_pred HHHHHHhcCCCEEE
Q 020516 260 AIQLANAREKPSIA 273 (325)
Q Consensus 260 p~HlAaAl~~P~ia 273 (325)
.+-=|-|.|+|+|+
T Consensus 386 ~vlEAma~G~PVVa 399 (475)
T cd03813 386 VILEAMAAGIPVVA 399 (475)
T ss_pred HHHHHHHcCCCEEE
Confidence 67778999999999
No 103
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=74.39 E-value=16 Score=34.05 Aligned_cols=81 Identities=17% Similarity=0.226 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhhcCC-CEEEecCCCchHHHHhHHccCC--Ccc-cc--cCh-----------HHHHHHHH--hCCEEEec
Q 020516 196 IQVWAEIANGLREFR-PLFVIPHEKEREGVEDVVGDDA--SIV-FI--TTP-----------GQLAALIN--DSAGVIAT 256 (325)
Q Consensus 196 ~e~~~~l~~~l~~~~-~vvl~g~~~e~~~~~~i~~~~~--~~~-~~--~~~-----------~el~ali~--~a~l~I~~ 256 (325)
+.-|+.+++.|.+++ .++++.-. .+.+.+++..+. -.. +. .+. -++..+++ +-|++||.
T Consensus 13 vhfFk~~I~eL~~~GheV~it~R~--~~~~~~LL~~yg~~y~~iG~~g~~~~~Kl~~~~~R~~~l~~~~~~~~pDv~is~ 90 (335)
T PF04007_consen 13 VHFFKNIIRELEKRGHEVLITARD--KDETEELLDLYGIDYIVIGKHGDSLYGKLLESIERQYKLLKLIKKFKPDVAISF 90 (335)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEec--cchHHHHHHHcCCCeEEEcCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCEEEec
Confidence 457899999999998 66666443 344445554321 110 00 111 34667777 78999998
Q ss_pred CchHH-HHHHhcCCCEEEEecCC
Q 020516 257 NTAAI-QLANAREKPSIALFSSE 278 (325)
Q Consensus 257 DTGp~-HlAaAl~~P~iaLfg~t 278 (325)
.|-.. |.|..+|+|+|.++=..
T Consensus 91 ~s~~a~~va~~lgiP~I~f~D~e 113 (335)
T PF04007_consen 91 GSPEAARVAFGLGIPSIVFNDTE 113 (335)
T ss_pred CcHHHHHHHHHhCCCeEEEecCc
Confidence 87654 59999999999988653
No 104
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=73.24 E-value=1e+02 Score=30.74 Aligned_cols=201 Identities=12% Similarity=0.135 Sum_probs=98.9
Q ss_pred HHHHHHHHHhcCCcEEEEecCCch--HHHHHHHHhCCCceeecccCCccc--CCcccccceeccCCCcchhhhHHHHHHH
Q 020516 49 YTDILGVMKNRYYDMVLSTKLAGL--GHAAFLFMTTARDRVSYIYPNVNA--AGAGLLLSETFTAESMNLSERGYNMYEQ 124 (325)
Q Consensus 49 ~~~l~~~Lr~~~yDl~i~~~~~~~--~~~~~~~~~~a~~rig~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (325)
.....++++....|+.||+.+.+. +...++. --||..|.|---.... ...-+|+.+..-.+++ .-++|..
T Consensus 324 d~e~a~~I~~d~IdILvDl~g~T~d~r~~v~A~-RpAPiqvswlGy~aT~g~p~~DY~I~D~y~vPp~-----ae~yysE 397 (620)
T COG3914 324 DAEIANAIRTDGIDILVDLDGHTVDTRCQVFAH-RPAPIQVSWLGYPATTGSPNMDYFISDPYTVPPT-----AEEYYSE 397 (620)
T ss_pred HHHHHHHHHhcCCeEEEeccCceeccchhhhhc-CCCceEEeecccccccCCCcceEEeeCceecCch-----HHHHHHH
Confidence 456778999999999999976522 2333332 2366556443000001 0112455544433432 2334444
Q ss_pred HHHHcCCCCCCCCCCCCCCCeeecCHHHHHHHHHHHHHcCCCCCCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHH
Q 020516 125 MVDWLGRPFRSVPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIAN 204 (325)
Q Consensus 125 ll~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~ 204 (325)
-+-.|-.++... .....-.++..+ .+.|+.++-+|.+| +.+.. | -.+|-|+.-.+
T Consensus 398 kl~RLp~cy~p~-----d~~~~v~p~~sR-------~~lglp~~avVf~c-~~n~~-----------K-~~pev~~~wmq 452 (620)
T COG3914 398 KLWRLPQCYQPV-----DGFEPVTPPPSR-------AQLGLPEDAVVFCC-FNNYF-----------K-ITPEVFALWMQ 452 (620)
T ss_pred HHHhcccccCCC-----CCcccCCCCcch-------hhcCCCCCeEEEEe-cCCcc-----------c-CCHHHHHHHHH
Confidence 443332111110 011111111111 23577655444444 44432 3 34455665555
Q ss_pred HhhcCC-C-EEEecCCCchHHHHhHHc---cCC----Cccccc-Ch-HHHHHHHHhCCEEEecCchH------HHHHHhc
Q 020516 205 GLREFR-P-LFVIPHEKEREGVEDVVG---DDA----SIVFIT-TP-GQLAALINDSAGVIATNTAA------IQLANAR 267 (325)
Q Consensus 205 ~l~~~~-~-vvl~g~~~e~~~~~~i~~---~~~----~~~~~~-~~-~el~ali~~a~l~I~~DTGp------~HlAaAl 267 (325)
-|.... . ++|.+++.+.+..+.+.+ +.. .+++.. .+ .+-.+=+..||+|+ ||=| .-=|--+
T Consensus 453 IL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~~iADlvL--DTyPY~g~TTa~daLwm 530 (620)
T COG3914 453 ILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARYGIADLVL--DTYPYGGHTTASDALWM 530 (620)
T ss_pred HHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhhchhheee--ecccCCCccchHHHHHh
Confidence 555544 3 455566656555544432 211 122221 11 35677888999998 3322 1224557
Q ss_pred CCCEEEEecCCCCCc
Q 020516 268 EKPSIALFSSELKGR 282 (325)
Q Consensus 268 ~~P~iaLfg~t~p~~ 282 (325)
|+|+++..|.+...|
T Consensus 531 ~vPVlT~~G~~FasR 545 (620)
T COG3914 531 GVPVLTRVGEQFASR 545 (620)
T ss_pred cCceeeeccHHHHHh
Confidence 999999999886554
No 105
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=73.06 E-value=31 Score=31.98 Aligned_cols=81 Identities=19% Similarity=0.185 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHhhcC-----C-CEEEecCCCch--------HHHHhHHcc-C---CCccccc--ChHHHHHHHHhCCEEE
Q 020516 195 PIQVWAEIANGLREF-----R-PLFVIPHEKER--------EGVEDVVGD-D---ASIVFIT--TPGQLAALINDSAGVI 254 (325)
Q Consensus 195 p~e~~~~l~~~l~~~-----~-~vvl~g~~~e~--------~~~~~i~~~-~---~~~~~~~--~~~el~ali~~a~l~I 254 (325)
..+...+.+..+.++ . .++++|+...+ +.++++.+. . .++.+.. ...++..+++.||++|
T Consensus 225 g~~~ll~a~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~~~~~~~~l~~ad~~l 304 (392)
T cd03805 225 NIALAIEAFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSISDSQKELLLSSARALL 304 (392)
T ss_pred ChHHHHHHHHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCChHHHHHHHhhCeEEE
Confidence 345677777777543 3 67777764321 233333333 1 2233222 2257889999999998
Q ss_pred ecCc-----hHHHHHHhcCCCEEEEe
Q 020516 255 ATNT-----AAIQLANAREKPSIALF 275 (325)
Q Consensus 255 ~~DT-----Gp~HlAaAl~~P~iaLf 275 (325)
.+.. ..+-=|-|.|+|+|+-=
T Consensus 305 ~~s~~E~~g~~~lEAma~G~PvI~s~ 330 (392)
T cd03805 305 YTPSNEHFGIVPLEAMYAGKPVIACN 330 (392)
T ss_pred ECCCcCCCCchHHHHHHcCCCEEEEC
Confidence 5421 22344899999999963
No 106
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=72.72 E-value=45 Score=31.81 Aligned_cols=77 Identities=16% Similarity=0.209 Sum_probs=45.6
Q ss_pred HHHHHhhcCC-CEEEecCCC-chHHHHhHHccCC-Ccccc--cChHHHHHHHHh--CCEEEecCchHHHHHHhcCCCEEE
Q 020516 201 EIANGLREFR-PLFVIPHEK-EREGVEDVVGDDA-SIVFI--TTPGQLAALIND--SAGVIATNTAAIQLANAREKPSIA 273 (325)
Q Consensus 201 ~l~~~l~~~~-~vvl~g~~~-e~~~~~~i~~~~~-~~~~~--~~~~el~ali~~--a~l~I~~DTGp~HlAaAl~~P~ia 273 (325)
.+++.+.+-+ .++.++.+. ..+..+++....+ +...+ .+..++...|+. .|++||+ |.--|+|..+|+|.+-
T Consensus 301 ~la~~l~elGm~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~e~~~~i~~~~pDl~ig~-s~~~~~a~~~gip~~~ 379 (410)
T cd01968 301 SLVSALQDLGMEVVATGTQKGTKEDYERIKELLGEGTVIVDDANPRELKKLLKEKKADLLVAG-GKERYLALKLGIPFCD 379 (410)
T ss_pred HHHHHHHHCCCEEEEEecccCCHHHHHHHHHHhCCCcEEEeCCCHHHHHHHHhhcCCCEEEEC-CcchhhHHhcCCCEEE
Confidence 3555555556 666665432 2223333333333 22212 233566676665 8999999 4447999999999997
Q ss_pred EecCC
Q 020516 274 LFSSE 278 (325)
Q Consensus 274 Lfg~t 278 (325)
+.++.
T Consensus 380 ~~~~~ 384 (410)
T cd01968 380 INHER 384 (410)
T ss_pred ccccc
Confidence 76553
No 107
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=72.61 E-value=83 Score=30.31 Aligned_cols=80 Identities=10% Similarity=0.036 Sum_probs=46.5
Q ss_pred HHHHHHHHhhcCC-CEEEecC-CCchH---HHHhHHccC---CCccc--ccChHHHHHHHHh--CCEEEecCchHHHHHH
Q 020516 198 VWAEIANGLREFR-PLFVIPH-EKERE---GVEDVVGDD---ASIVF--ITTPGQLAALIND--SAGVIATNTAAIQLAN 265 (325)
Q Consensus 198 ~~~~l~~~l~~~~-~vvl~g~-~~e~~---~~~~i~~~~---~~~~~--~~~~~el~ali~~--a~l~I~~DTGp~HlAa 265 (325)
+...+++.|.+-+ .++.+++ ..+.. .+.++.... ++... -.+..++...++. .|++||+..+ -|+|.
T Consensus 314 ~~~~la~~L~elGm~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~d~~e~~~~i~~~~pDliiG~s~~-~~~a~ 392 (435)
T cd01974 314 FLIGLTSFLLELGMEPVHVLTGNGGKRFEKEMQALLDASPYGAGAKVYPGKDLWHLRSLLFTEPVDLLIGNTYG-KYIAR 392 (435)
T ss_pred HHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHHHhhcCCCCCcEEEECCCHHHHHHHHhhcCCCEEEECccH-HHHHH
Confidence 4555666666656 4444333 22332 333333332 12221 1344666666655 7899999987 89999
Q ss_pred hcCCCEEEEecCC
Q 020516 266 AREKPSIALFSSE 278 (325)
Q Consensus 266 Al~~P~iaLfg~t 278 (325)
-+|+|.+.+--|.
T Consensus 393 ~~gip~v~~~~P~ 405 (435)
T cd01974 393 DTDIPLVRFGFPI 405 (435)
T ss_pred HhCCCEEEeeCCc
Confidence 9999988654343
No 108
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=72.10 E-value=58 Score=31.21 Aligned_cols=127 Identities=9% Similarity=0.024 Sum_probs=62.7
Q ss_pred hhHHHHHHHHHHHcCCCCCCCCCCCCCC-CeeecCHHH-HHHHHHH----HHHcCCCCCCeEEEecCCCCcccccccCCC
Q 020516 116 ERGYNMYEQMVDWLGRPFRSVPRHPVPP-LRVSISRRL-KEVVAEK----YKNAGAEQGKYIVIHGIESDSKASMQSRGD 189 (325)
Q Consensus 116 ~~~~~~~~~ll~~lg~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~----~~~~~~~~~~~i~i~~gas~~~~~~~~r~~ 189 (325)
...++.+.+.++..|+....+. ...|. +.+.-+.++ ++...+. +.....-.-++|++|||+....
T Consensus 175 ~~~~~~f~~~~~~~gi~~~~i~-~HapYlINLASpd~e~rekSv~~~~~eL~rA~~LGa~~VV~HPGs~~~~-------- 245 (413)
T PTZ00372 175 DETIDKFKENCKKYNYDPKFIL-PHGSYLINLANPDKEKREKSYDAFLDDLQRCEQLGIKLYNFHPGSTVGQ-------- 245 (413)
T ss_pred HHHHHHHHHHHHHcCCCcceEE-eecCceecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCcCCCC--------
Confidence 4457778888888876322111 11122 333333333 3322221 2221111346999999985321
Q ss_pred CCCCCCHHHHHHHHHHhhc---CC-CE-EEecCCCchHHHHhHHccCCCcccccChHHHHHHHHhC----CEEEecCchH
Q 020516 190 TDSLLPIQVWAEIANGLRE---FR-PL-FVIPHEKEREGVEDVVGDDASIVFITTPGQLAALINDS----AGVIATNTAA 260 (325)
Q Consensus 190 ~~K~wp~e~~~~l~~~l~~---~~-~v-vl~g~~~e~~~~~~i~~~~~~~~~~~~~~el~ali~~a----~l~I~~DTGp 260 (325)
.-+.+-|..+++.|.+ +. .+ +++ |... ...+.. ..+..++..+|+.. ++-||-||+-
T Consensus 246 ---~~~ee~i~~i~e~L~~~la~~~gV~IlL---------ENma-g~g~~l-G~~~eeL~~Iid~v~~~~rlGvCLDTcH 311 (413)
T PTZ00372 246 ---CSKEEGIKNIADCINKAHEETKSVIIVL---------ENTA-GQKNSV-GSKFEDLRDIIALVEDKSRVGVCLDTCH 311 (413)
T ss_pred ---CCHHHHHHHHHHHHHHHHhCcCCCEEEE---------ecCC-CCCCcc-cCCHHHHHHHHHhcCCcCCeEEEEEHHH
Confidence 1234556666555543 22 12 222 0111 111111 23457888888864 5889999999
Q ss_pred HHHHH
Q 020516 261 IQLAN 265 (325)
Q Consensus 261 ~HlAa 265 (325)
+|.|.
T Consensus 312 afaAG 316 (413)
T PTZ00372 312 LFAAG 316 (413)
T ss_pred HHhcC
Confidence 88665
No 109
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=69.25 E-value=1.2e+02 Score=29.64 Aligned_cols=79 Identities=8% Similarity=0.049 Sum_probs=49.4
Q ss_pred HHHHHHHHhhcCC-CE--EEecCC----CchHHHHhHHccCC-C--cccccChHHHHHHHH----hCCEEEecCchHHHH
Q 020516 198 VWAEIANGLREFR-PL--FVIPHE----KEREGVEDVVGDDA-S--IVFITTPGQLAALIN----DSAGVIATNTAAIQL 263 (325)
Q Consensus 198 ~~~~l~~~l~~~~-~v--vl~g~~----~e~~~~~~i~~~~~-~--~~~~~~~~el~ali~----~a~l~I~~DTGp~Hl 263 (325)
+-..+++.+.+-+ .+ +++++. .+.+..+++....+ . +....+..++...++ .+|++||+.-| .|+
T Consensus 323 ~~~~l~~~l~elGm~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~~~d~~~l~~~i~~~~~~~Dliig~s~~-~~~ 401 (461)
T TIGR02931 323 LVIGLAEFCLDLEMKPVLLLLGDDNSGYVDDPRIKALQENVDYDMEIVTNADFWELESRIKNQGLELDLILGHSKG-RFI 401 (461)
T ss_pred HHHHHHHHHHHCCCEEEEEEECCCCcccchhHHHHHHHhhCCCCceEEeCCCHHHHHHHHHhcCCCCCEEEECcch-HHH
Confidence 4445555555555 22 234432 13445555544332 1 222245578888888 59999999987 999
Q ss_pred HHhcCCCEEEEecC
Q 020516 264 ANAREKPSIALFSS 277 (325)
Q Consensus 264 AaAl~~P~iaLfg~ 277 (325)
|..+|+|.+-+--|
T Consensus 402 a~k~gip~~~~g~P 415 (461)
T TIGR02931 402 SIDYNIPMVRVGFP 415 (461)
T ss_pred HHHcCCCEEEecCc
Confidence 99999999987433
No 110
>PLN02210 UDP-glucosyl transferase
Probab=67.41 E-value=35 Score=33.19 Aligned_cols=137 Identities=12% Similarity=-0.041 Sum_probs=76.4
Q ss_pred CCCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCC-CEEEecCCC-chHHHHhHHccC--CCcccccChHH
Q 020516 167 QGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFVIPHEK-EREGVEDVVGDD--ASIVFITTPGQ 242 (325)
Q Consensus 167 ~~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~-~vvl~g~~~-e~~~~~~i~~~~--~~~~~~~~~~e 242 (325)
+++.|.++.|+.. ..+.+++.+++..|...+ +|++.-.+. ..+....+.... .+..++.-..|
T Consensus 268 ~~svvyvsfGS~~-------------~~~~~~~~e~a~~l~~~~~~flw~~~~~~~~~~~~~~~~~~~~~~g~v~~w~PQ 334 (456)
T PLN02210 268 RSSVVYISFGSML-------------ESLENQVETIAKALKNRGVPFLWVIRPKEKAQNVQVLQEMVKEGQGVVLEWSPQ 334 (456)
T ss_pred CCceEEEEecccc-------------cCCHHHHHHHHHHHHhCCCCEEEEEeCCccccchhhHHhhccCCCeEEEecCCH
Confidence 3567778777643 168899999999999887 766644332 111111122111 11111221223
Q ss_pred HHHHHHhCC--EEEecC-chHHHHHHhcCCCEEEEecCCCCCccccCCC-C-CCceeeeeCCCCCCCCCCHHHHHHHHHH
Q 020516 243 LAALINDSA--GVIATN-TAAIQLANAREKPSIALFSSELKGRLFVPNA-E-EKKCTVISSRTGKLIDTPVEAVLNAMQI 317 (325)
Q Consensus 243 l~ali~~a~--l~I~~D-TGp~HlAaAl~~P~iaLfg~t~p~~~~pp~~-~-~~~~~~~~~~~~~m~~I~~~~V~~~~~~ 317 (325)
..++++++ +||++. -+-++=|...|||+|++=--.+.....- +. . -+--+.+... ..-..++.++|.+++++
T Consensus 335 -~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~-~~~~~~g~G~~l~~~-~~~~~~~~~~l~~av~~ 411 (456)
T PLN02210 335 -EKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDAR-LLVDVFGIGVRMRND-AVDGELKVEEVERCIEA 411 (456)
T ss_pred -HHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHHH-HHHHHhCeEEEEecc-ccCCcCCHHHHHHHHHH
Confidence 35899998 999998 4788889999999998622222111000 00 0 0001111111 00125799999999998
Q ss_pred HH
Q 020516 318 FN 319 (325)
Q Consensus 318 ~~ 319 (325)
++
T Consensus 412 ~m 413 (456)
T PLN02210 412 VT 413 (456)
T ss_pred Hh
Confidence 76
No 111
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=67.21 E-value=33 Score=32.81 Aligned_cols=79 Identities=11% Similarity=0.114 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhhcCC-CEEEecCCCchHHHHhHHccCCCcccccChHHHHHHHHhCCEEEecCc-hHHHHHHhcCCCEEE
Q 020516 196 IQVWAEIANGLREFR-PLFVIPHEKEREGVEDVVGDDASIVFITTPGQLAALINDSAGVIATNT-AAIQLANAREKPSIA 273 (325)
Q Consensus 196 ~e~~~~l~~~l~~~~-~vvl~g~~~e~~~~~~i~~~~~~~~~~~~~~el~ali~~a~l~I~~DT-Gp~HlAaAl~~P~ia 273 (325)
.+-|..+.+.+.+-. .+|+..+..+. . ......+.. +..-....+++.+||+||++-. |.+==|-..|||+|+
T Consensus 251 ~~l~~~~~~a~~~l~~~vi~~~~~~~~-~---~~~~p~n~~-v~~~~p~~~~l~~ad~vI~hGG~gtt~eaL~~gvP~vv 325 (406)
T COG1819 251 VELLAIVLEALADLDVRVIVSLGGARD-T---LVNVPDNVI-VADYVPQLELLPRADAVIHHGGAGTTSEALYAGVPLVV 325 (406)
T ss_pred HHHHHHHHHHHhcCCcEEEEecccccc-c---cccCCCceE-EecCCCHHHHhhhcCEEEecCCcchHHHHHHcCCCEEE
Confidence 777888888887777 66666655222 1 111112222 2222344569999999999864 666667889999999
Q ss_pred EecCCC
Q 020516 274 LFSSEL 279 (325)
Q Consensus 274 Lfg~t~ 279 (325)
+-...+
T Consensus 326 ~P~~~D 331 (406)
T COG1819 326 IPDGAD 331 (406)
T ss_pred ecCCcc
Confidence 877644
No 112
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=65.72 E-value=34 Score=31.68 Aligned_cols=64 Identities=16% Similarity=0.220 Sum_probs=43.2
Q ss_pred CEEEecCCCchHHHHhHHccC--C-Ccccc---cCh-HHHHHHHHhCCEEEecCc-----hHHHHHHhcCCCEEEE
Q 020516 211 PLFVIPHEKEREGVEDVVGDD--A-SIVFI---TTP-GQLAALINDSAGVIATNT-----AAIQLANAREKPSIAL 274 (325)
Q Consensus 211 ~vvl~g~~~e~~~~~~i~~~~--~-~~~~~---~~~-~el~ali~~a~l~I~~DT-----Gp~HlAaAl~~P~iaL 274 (325)
.++++|...+.+.+++..+.. + ++.+. ..+ .+++..++.||++|.+.. ..+-=|-|.|+|+|+-
T Consensus 212 ~l~ivG~g~~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~G~Pvv~s 287 (359)
T PRK09922 212 QLHIIGDGSDFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKNVSALLLTSKFEGFPMTLLEAMSYGIPCISS 287 (359)
T ss_pred EEEEEeCCccHHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhcCcEEEECCcccCcChHHHHHHHcCCCEEEe
Confidence 788888666666666665533 2 33322 223 578899999999997643 3444489999999984
No 113
>PRK14099 glycogen synthase; Provisional
Probab=64.67 E-value=65 Score=31.54 Aligned_cols=79 Identities=14% Similarity=0.082 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHhhcCC-CEEEecCCCc--hHHHHhHHccCCC-c-ccccChHHHHHHH-HhCCEEEecCc----h-HHHH
Q 020516 195 PIQVWAEIANGLREFR-PLFVIPHEKE--REGVEDVVGDDAS-I-VFITTPGQLAALI-NDSAGVIATNT----A-AIQL 263 (325)
Q Consensus 195 p~e~~~~l~~~l~~~~-~vvl~g~~~e--~~~~~~i~~~~~~-~-~~~~~~~el~ali-~~a~l~I~~DT----G-p~Hl 263 (325)
..+...+.+..+.+.. +++++|+.++ ++..+++....++ . .+.....+++.++ +.||+||.+-- | +.=.
T Consensus 309 G~d~Li~A~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~~~~~v~~~~G~~~~l~~~~~a~aDifv~PS~~E~fGl~~lE 388 (485)
T PRK14099 309 GLDLLLEALPTLLGEGAQLALLGSGDAELEARFRAAAQAYPGQIGVVIGYDEALAHLIQAGADALLVPSRFEPCGLTQLC 388 (485)
T ss_pred cHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCHHHHHHHHhcCCEEEECCccCCCcHHHHH
Confidence 3456666666665555 7888876432 3455555554442 2 1122236788888 57999997632 3 3457
Q ss_pred HHhcCCCEEE
Q 020516 264 ANAREKPSIA 273 (325)
Q Consensus 264 AaAl~~P~ia 273 (325)
|-|.|+|.|+
T Consensus 389 Ama~G~ppVv 398 (485)
T PRK14099 389 ALRYGAVPVV 398 (485)
T ss_pred HHHCCCCcEE
Confidence 8999977666
No 114
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=63.70 E-value=1.4e+02 Score=28.65 Aligned_cols=80 Identities=14% Similarity=0.053 Sum_probs=48.3
Q ss_pred HHHHHHHHhhcCC-CEEEecCCCc----hHHHHhHHccC-CCccc--ccChHHHHHHHHh--CCEEEecCchHHHHHHhc
Q 020516 198 VWAEIANGLREFR-PLFVIPHEKE----REGVEDVVGDD-ASIVF--ITTPGQLAALIND--SAGVIATNTAAIQLANAR 267 (325)
Q Consensus 198 ~~~~l~~~l~~~~-~vvl~g~~~e----~~~~~~i~~~~-~~~~~--~~~~~el~ali~~--a~l~I~~DTGp~HlAaAl 267 (325)
+...+++.|.+-+ .++.+..... ++.++++.... .+... ..+..++..++++ +|++||+.-+ .|+|.-+
T Consensus 311 ~~~~l~~~L~elG~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~d~~e~~~~l~~~~~dliiG~s~~-~~~a~~~ 389 (429)
T cd03466 311 FVVAITRFVLENGMVPVLIATGSESKKLKEKLEEDLKEYVEKCVILDGADFFDIESYAKELKIDVLIGNSYG-RRIAEKL 389 (429)
T ss_pred HHHHHHHHHHHCCCEEEEEEeCCCChHHHHHHHHHHHhcCCceEEEeCCCHHHHHHHHHhcCCCEEEECchh-HHHHHHc
Confidence 5556666666656 4433433221 23333333322 22221 2244778887766 7899999987 7999999
Q ss_pred CCCEEEEecCC
Q 020516 268 EKPSIALFSSE 278 (325)
Q Consensus 268 ~~P~iaLfg~t 278 (325)
|+|.+.+.-|.
T Consensus 390 ~ip~~~~~~P~ 400 (429)
T cd03466 390 GIPLIRIGFPI 400 (429)
T ss_pred CCCEEEecCCc
Confidence 99998765443
No 115
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=62.87 E-value=75 Score=30.51 Aligned_cols=69 Identities=7% Similarity=-0.053 Sum_probs=41.9
Q ss_pred hcCC-CEEEecCC--CchHHHHhHHccCC-Cccccc--ChHHHHHHHH--hCCEEEecCchHHHHHHhcCCCEEEEecC
Q 020516 207 REFR-PLFVIPHE--KEREGVEDVVGDDA-SIVFIT--TPGQLAALIN--DSAGVIATNTAAIQLANAREKPSIALFSS 277 (325)
Q Consensus 207 ~~~~-~vvl~g~~--~e~~~~~~i~~~~~-~~~~~~--~~~el~ali~--~a~l~I~~DTGp~HlAaAl~~P~iaLfg~ 277 (325)
.+-+ .++.+|++ .+.++.+ .....+ ....+. +..++..+|+ ..|++||+-- -.|+|..+|+|.+-+.+.
T Consensus 320 ~elGmevv~~g~~~~~~~~~~~-~~~~~~~~~~i~~~~d~~e~~~~i~~~~pDliig~~~-~~~~a~k~giP~~~~~~~ 396 (421)
T cd01976 320 EDLGMEVVGTGYEFAHRDDYER-TEVIPKEGTLLYDDVTHYELEEFVKRLKPDLIGSGIK-EKYVFQKMGIPFRQMHSW 396 (421)
T ss_pred HHCCCEEEEEEeecCCHHHHhh-HHhhcCCceEEEcCCCHHHHHHHHHHhCCCEEEecCc-chhhhhhcCCCeEeCCcc
Confidence 3446 77777764 3333333 222222 222122 3456666655 4889998876 889999999999877543
No 116
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=62.08 E-value=25 Score=32.81 Aligned_cols=114 Identities=17% Similarity=0.228 Sum_probs=52.9
Q ss_pred HHHHcCCCC-CCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCC-CEEEecCCCchHHHHhHHccCCCccc
Q 020516 159 KYKNAGAEQ-GKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFVIPHEKEREGVEDVVGDDASIVF 236 (325)
Q Consensus 159 ~~~~~~~~~-~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~-~vvl~g~~~e~~~~~~i~~~~~~~~~ 236 (325)
..+..++.. ++.|+..|.=+... ... ........-.+.+|. .+.+.. .+++-.+|..............++..
T Consensus 182 i~~~~~~~~~~k~ILyaPT~R~~~---~~~-~~~~~~~~~~~~~l~-~~~~~~~~li~k~Hp~~~~~~~~~~~~~~~i~~ 256 (369)
T PF04464_consen 182 IKKKLGIDKDKKVILYAPTWRDNS---SNE-YFKFFFSDLDFEKLN-FLLKNNYVLIIKPHPNMKKKFKDFKEDNSNIIF 256 (369)
T ss_dssp HHHHTT--SS-EEEEEE----GGG-----G-GSS----TT-HHHHH-HHHTTTEEEEE--SHHHHTT----TT-TTTEEE
T ss_pred HHHHhccCCCCcEEEEeecccccc---ccc-cccccccccCHHHHH-HHhCCCcEEEEEeCchhhhchhhhhccCCcEEE
Confidence 344455554 45777777433221 000 000012333566666 444444 55566778655444333223334443
Q ss_pred ccChHHHHHHHHhCCEEEecCchHHHHHHhcCCCEEEEecCC
Q 020516 237 ITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIALFSSE 278 (325)
Q Consensus 237 ~~~~~el~ali~~a~l~I~~DTGp~HlAaAl~~P~iaLfg~t 278 (325)
++...++..++..||++||==|+.+-=++.+++|+| +|.+.
T Consensus 257 ~~~~~~~~~ll~~aDiLITDySSi~fD~~~l~KPii-fy~~D 297 (369)
T PF04464_consen 257 VSDNEDIYDLLAAADILITDYSSIIFDFLLLNKPII-FYQPD 297 (369)
T ss_dssp -TT-S-HHHHHHT-SEEEESS-THHHHHGGGT--EE-EE-TT
T ss_pred CCCCCCHHHHHHhcCEEEEechhHHHHHHHhCCCEE-EEecc
Confidence 344357899999999999999999999999999987 44443
No 117
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=61.75 E-value=50 Score=30.84 Aligned_cols=77 Identities=12% Similarity=0.044 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhhcCCCEEEecCCCchHHHHhHHccCCCccccc--ChHHHHHHHHhCCEEEec--Cc--------hHHHH
Q 020516 196 IQVWAEIANGLREFRPLFVIPHEKEREGVEDVVGDDASIVFIT--TPGQLAALINDSAGVIAT--NT--------AAIQL 263 (325)
Q Consensus 196 ~e~~~~l~~~l~~~~~vvl~g~~~e~~~~~~i~~~~~~~~~~~--~~~el~ali~~a~l~I~~--DT--------Gp~Hl 263 (325)
.+-..++++.. ....++++|..++.....++ ...+++.+.. ...++.+.++.||++|.+ ++ .-+-=
T Consensus 220 ~~ll~~la~~~-p~~~~vliG~~~~~~~~~~~-~~~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~E 297 (373)
T cd04950 220 LELLEALAKAR-PDWSFVLIGPVDVSIDPSAL-LRLPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFE 297 (373)
T ss_pred HHHHHHHHHHC-CCCEEEEECCCcCccChhHh-ccCCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHH
Confidence 34555554432 12267788764222111222 2245554332 227899999999998864 11 12456
Q ss_pred HHhcCCCEEEE
Q 020516 264 ANAREKPSIAL 274 (325)
Q Consensus 264 AaAl~~P~iaL 274 (325)
|.|.|+|+|+-
T Consensus 298 ylA~G~PVVat 308 (373)
T cd04950 298 YLAAGKPVVAT 308 (373)
T ss_pred HhccCCCEEec
Confidence 89999999963
No 118
>PLN02939 transferase, transferring glycosyl groups
Probab=60.98 E-value=1.4e+02 Score=32.04 Aligned_cols=79 Identities=10% Similarity=0.044 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhhcCC-CEEEecCCCch---HHHHhHHccCC---CcccccC-hH-HHHHHHHhCCEEEecC-----chHH
Q 020516 196 IQVWAEIANGLREFR-PLFVIPHEKER---EGVEDVVGDDA---SIVFITT-PG-QLAALINDSAGVIATN-----TAAI 261 (325)
Q Consensus 196 ~e~~~~l~~~l~~~~-~vvl~g~~~e~---~~~~~i~~~~~---~~~~~~~-~~-el~ali~~a~l~I~~D-----TGp~ 261 (325)
.+...+.+..+.+.. +++++|+..+. +..+++...++ ++.+... .. ....+++.||+||.+- .-..
T Consensus 794 iDlLleA~~~Ll~~dvqLVIvGdGp~~~~e~eL~~La~~l~l~drV~FlG~~de~lah~IYAaADIFLmPSr~EPfGLvq 873 (977)
T PLN02939 794 VHLIRHAIYKTAELGGQFVLLGSSPVPHIQREFEGIADQFQSNNNIRLILKYDEALSHSIYAASDMFIIPSMFEPCGLTQ 873 (977)
T ss_pred hHHHHHHHHHHhhcCCEEEEEeCCCcHHHHHHHHHHHHHcCCCCeEEEEeccCHHHHHHHHHhCCEEEECCCccCCcHHH
Confidence 346666665555444 78888754332 34444444442 2322211 12 3467999999999753 5567
Q ss_pred HHHHhcCCCEEEE
Q 020516 262 QLANAREKPSIAL 274 (325)
Q Consensus 262 HlAaAl~~P~iaL 274 (325)
-.|-+.|+|+|+-
T Consensus 874 LEAMAyGtPPVVs 886 (977)
T PLN02939 874 MIAMRYGSVPIVR 886 (977)
T ss_pred HHHHHCCCCEEEe
Confidence 7899999999873
No 119
>PLN02316 synthase/transferase
Probab=60.71 E-value=1.9e+02 Score=31.43 Aligned_cols=80 Identities=6% Similarity=-0.006 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHhhcCC-CEEEecCCCch---HHHHhHHcc----CCC-cccc-cChHHH-HHHHHhCCEEEecC-----c
Q 020516 195 PIQVWAEIANGLREFR-PLFVIPHEKER---EGVEDVVGD----DAS-IVFI-TTPGQL-AALINDSAGVIATN-----T 258 (325)
Q Consensus 195 p~e~~~~l~~~l~~~~-~vvl~g~~~e~---~~~~~i~~~----~~~-~~~~-~~~~el-~ali~~a~l~I~~D-----T 258 (325)
..+...+.+..+.+.. +++|+|+..+. +..+++... .++ +.+. .....+ ..+++.||+||.+. .
T Consensus 854 GvdlLi~Al~~ll~~~~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iyaaADiflmPS~~EP~G 933 (1036)
T PLN02316 854 GIHLIKHAIWRTLERNGQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYAGADFILVPSIFEPCG 933 (1036)
T ss_pred CHHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHHhCcEEEeCCcccCcc
Confidence 3556666666665555 78888864332 333444442 222 2211 122444 37999999999763 3
Q ss_pred hHHHHHHhcCCCEEEE
Q 020516 259 AAIQLANAREKPSIAL 274 (325)
Q Consensus 259 Gp~HlAaAl~~P~iaL 274 (325)
-..-.|-+.|+|.|+-
T Consensus 934 LvqLEAMa~GtppVvs 949 (1036)
T PLN02316 934 LTQLTAMRYGSIPVVR 949 (1036)
T ss_pred HHHHHHHHcCCCeEEE
Confidence 4455689999988883
No 120
>PRK09932 glycerate kinase II; Provisional
Probab=59.86 E-value=57 Score=30.91 Aligned_cols=40 Identities=20% Similarity=0.208 Sum_probs=34.1
Q ss_pred HHHHHHHhCCEEEecCc-------------hHHHHHHhcCCCEEEEecCCCCC
Q 020516 242 QLAALINDSAGVIATNT-------------AAIQLANAREKPSIALFSSELKG 281 (325)
Q Consensus 242 el~ali~~a~l~I~~DT-------------Gp~HlAaAl~~P~iaLfg~t~p~ 281 (325)
.+-..|+.||++|+... |..++|...++|+|+|=|.-...
T Consensus 277 ~l~~~l~~ADlVITGEG~~D~Qt~~GK~p~~Va~~A~~~~~Pvi~i~G~~~~~ 329 (381)
T PRK09932 277 NLEQAVQGAALVITGEGRIDSQTAGGKAPLGVASVAKQFNVPVIGIAGVLGDG 329 (381)
T ss_pred ChHHHhccCCEEEECCCcccccccCCccHHHHHHHHHHcCCCEEEEecccCCC
Confidence 56789999999999875 77888899999999999985443
No 121
>PLN02501 digalactosyldiacylglycerol synthase
Probab=58.88 E-value=45 Score=34.35 Aligned_cols=83 Identities=10% Similarity=0.011 Sum_probs=48.9
Q ss_pred HHHHHHHHHhhcCC---CEEEecCCCchHHHHhHHccCC-CcccccChHHHHHHHHhCCEEEec---CchHHHH--HHhc
Q 020516 197 QVWAEIANGLREFR---PLFVIPHEKEREGVEDVVGDDA-SIVFITTPGQLAALINDSAGVIAT---NTAAIQL--ANAR 267 (325)
Q Consensus 197 e~~~~l~~~l~~~~---~vvl~g~~~e~~~~~~i~~~~~-~~~~~~~~~el~ali~~a~l~I~~---DTGp~Hl--AaAl 267 (325)
+.+.+.+..+.++. .++|+|...+++.+++...... ++.+.........+++.+|+||-+ +|-++=+ |-|.
T Consensus 562 d~LLeAla~L~~~~pnvrLvIVGDGP~reeLe~la~eLgL~V~FLG~~dd~~~lyasaDVFVlPS~sEgFGlVlLEAMA~ 641 (794)
T PLN02501 562 RELIDLLAKHKNELDGFNLDVFGNGEDAHEVQRAAKRLDLNLNFLKGRDHADDSLHGYKVFINPSISDVLCTATAEALAM 641 (794)
T ss_pred HHHHHHHHHHHhhCCCeEEEEEcCCccHHHHHHHHHHcCCEEEecCCCCCHHHHHHhCCEEEECCCcccchHHHHHHHHc
Confidence 34555554444432 6777776556666665554332 222222112345799999999874 4434333 6889
Q ss_pred CCCEEEEecCCC
Q 020516 268 EKPSIALFSSEL 279 (325)
Q Consensus 268 ~~P~iaLfg~t~ 279 (325)
|+|+|+-=.+.+
T Consensus 642 GlPVVATd~pG~ 653 (794)
T PLN02501 642 GKFVVCADHPSN 653 (794)
T ss_pred CCCEEEecCCCC
Confidence 999999866543
No 122
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=58.61 E-value=58 Score=30.88 Aligned_cols=78 Identities=14% Similarity=0.154 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhhcCC-----CEEEecCCCchHHHHhHHccCC---Cccccc--ChHHHHHHHHh--CCEEEecCc-----
Q 020516 196 IQVWAEIANGLREFR-----PLFVIPHEKEREGVEDVVGDDA---SIVFIT--TPGQLAALIND--SAGVIATNT----- 258 (325)
Q Consensus 196 ~e~~~~l~~~l~~~~-----~vvl~g~~~e~~~~~~i~~~~~---~~~~~~--~~~el~ali~~--a~l~I~~DT----- 258 (325)
.+...+.+..+.+.+ .++++|+..+.+..++..+... ++.+.. +..++.++++. ||++|.+..
T Consensus 245 ~~~li~a~~~l~~~~p~~~l~~~iiG~g~~~~~l~~~~~~~~~~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p 324 (407)
T cd04946 245 VDLIIKALAALAKARPSIKIKWTHIGGGPLEDTLKELAESKPENISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLP 324 (407)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEEEeCchHHHHHHHHHHhcCCCceEEEecCCChHHHHHHHhhcCCCEEEeCCcccccc
Confidence 456667766666543 3455676555555555543221 222111 22578888876 677776543
Q ss_pred hHHHHHHhcCCCEEE
Q 020516 259 AAIQLANAREKPSIA 273 (325)
Q Consensus 259 Gp~HlAaAl~~P~ia 273 (325)
..+-=|-|.|+|+|+
T Consensus 325 ~~llEAma~G~PVIa 339 (407)
T cd04946 325 VSIMEAMSFGIPVIA 339 (407)
T ss_pred HHHHHHHHcCCCEEe
Confidence 224448999999998
No 123
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=58.43 E-value=1e+02 Score=25.21 Aligned_cols=30 Identities=20% Similarity=0.230 Sum_probs=24.8
Q ss_pred CCCCCHHHHHHHHHHhhcCC--CEEEecCCCc
Q 020516 191 DSLLPIQVWAEIANGLREFR--PLFVIPHEKE 220 (325)
Q Consensus 191 ~K~wp~e~~~~l~~~l~~~~--~vvl~g~~~e 220 (325)
.|.|+-|.|+..++.+...+ -.+++||+.-
T Consensus 77 Gk~~sSe~fA~~l~~~~~~G~~i~f~IGG~~G 108 (155)
T COG1576 77 GKALSSEEFADFLERLRDDGRDISFLIGGADG 108 (155)
T ss_pred CCcCChHHHHHHHHHHHhcCCeEEEEEeCccc
Confidence 47799999999999999877 5667788763
No 124
>PLN02448 UDP-glycosyltransferase family protein
Probab=58.38 E-value=59 Score=31.58 Aligned_cols=136 Identities=13% Similarity=0.025 Sum_probs=74.5
Q ss_pred CCCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCC-CEEEecCCCchHHHHhHHccCCCcccccChHHHHH
Q 020516 167 QGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFVIPHEKEREGVEDVVGDDASIVFITTPGQLAA 245 (325)
Q Consensus 167 ~~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~-~vvl~g~~~e~~~~~~i~~~~~~~~~~~~~~el~a 245 (325)
.++.|.+..|+... .+.+.+.++++.|...+ ++|+...+. ....++... .+.....- ---.+
T Consensus 273 ~~~vvyvsfGs~~~-------------~~~~~~~~~~~~l~~~~~~~lw~~~~~-~~~~~~~~~--~~~~v~~w-~pQ~~ 335 (459)
T PLN02448 273 EGSVLYVSLGSFLS-------------VSSAQMDEIAAGLRDSGVRFLWVARGE-ASRLKEICG--DMGLVVPW-CDQLK 335 (459)
T ss_pred CCceEEEeeccccc-------------CCHHHHHHHHHHHHhCCCCEEEEEcCc-hhhHhHhcc--CCEEEecc-CCHHH
Confidence 35577788776531 57789999999999877 777643322 111122111 12221111 12345
Q ss_pred HHHhCCE--EEecCc-hHHHHHHhcCCCEEEEecCCCCCccccCCCCC--CceeeeeCCCCCCCCCCHHHHHHHHHHHHH
Q 020516 246 LINDSAG--VIATNT-AAIQLANAREKPSIALFSSELKGRLFVPNAEE--KKCTVISSRTGKLIDTPVEAVLNAMQIFNE 320 (325)
Q Consensus 246 li~~a~l--~I~~DT-Gp~HlAaAl~~P~iaLfg~t~p~~~~pp~~~~--~~~~~~~~~~~~m~~I~~~~V~~~~~~~~~ 320 (325)
+++++++ ||++.. |.+.=|.+.|+|+|++=--.+.....- .... +..+.+......-..++.++|.+++++++.
T Consensus 336 iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~-~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~ 414 (459)
T PLN02448 336 VLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSK-LIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMD 414 (459)
T ss_pred HhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHH-HHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhc
Confidence 7777775 999885 567778999999998632222111000 0000 001112111111125789999999999874
No 125
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=57.15 E-value=58 Score=30.55 Aligned_cols=62 Identities=13% Similarity=0.193 Sum_probs=39.2
Q ss_pred CEEEecCCCchHHHHhHHccCCCcccccChHHHHHHHHhCCEEEecC---chH---HHHHHhcCCCEEEE
Q 020516 211 PLFVIPHEKEREGVEDVVGDDASIVFITTPGQLAALINDSAGVIATN---TAA---IQLANAREKPSIAL 274 (325)
Q Consensus 211 ~vvl~g~~~e~~~~~~i~~~~~~~~~~~~~~el~ali~~a~l~I~~D---TGp---~HlAaAl~~P~iaL 274 (325)
.++++|+..+. .++++.. .+++.+.....++..+++.||++|.+- .|. +-=|-|.|+|+|+-
T Consensus 261 ~l~ivG~g~~~-~~~~l~~-~~~V~~~G~v~~~~~~~~~adv~v~Ps~~~eG~~~~~lEAma~G~PVV~t 328 (397)
T TIGR03087 261 EFYIVGAKPSP-AVRALAA-LPGVTVTGSVADVRPYLAHAAVAVAPLRIARGIQNKVLEAMAMAKPVVAS 328 (397)
T ss_pred EEEEECCCChH-HHHHhcc-CCCeEEeeecCCHHHHHHhCCEEEecccccCCcccHHHHHHHcCCCEEec
Confidence 67777754333 3343322 234432222347889999999999652 343 66689999999993
No 126
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=57.04 E-value=1.9e+02 Score=28.04 Aligned_cols=74 Identities=15% Similarity=0.143 Sum_probs=44.7
Q ss_pred HHHHHhhcCC-CEEEecCCCchHHHHhHHccCCCcccccChHHHHHHHHhCCEEEecCchHHHHHHhcCCCEEEEecCC
Q 020516 201 EIANGLREFR-PLFVIPHEKEREGVEDVVGDDASIVFITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIALFSSE 278 (325)
Q Consensus 201 ~l~~~l~~~~-~vvl~g~~~e~~~~~~i~~~~~~~~~~~~~~el~ali~~a~l~I~~DTGp~HlAaAl~~P~iaLfg~t 278 (325)
.+++.|.+-+ .++.+......+..+++. ...+. +.+..++...++..|++||+--+ .++|.-+|+|.+-.--|.
T Consensus 325 ~la~~L~elG~~v~~~~~~~~~~~~~~~~--~~~i~-~~D~~~le~~~~~~dliig~s~~-~~~a~~~gip~~~~g~Pi 399 (455)
T PRK14476 325 ALGSFLAEMGAEIVAAVTTTKSPALEDLP--AEEVL-IGDLEDLEELAEGADLLITNSHG-RQAAERLGIPLLRVGFPI 399 (455)
T ss_pred HHHHHHHHCCCEEEEEEeCCCcHHHHhCC--cCcEE-eCCHHHHHHhccCCCEEEECchh-HHHHHHcCCCEEEecCCc
Confidence 3555556556 444333333223333331 11222 44556666667799999998877 899999999998654443
No 127
>PRK09375 quinolinate synthetase; Provisional
Probab=55.29 E-value=59 Score=30.00 Aligned_cols=117 Identities=12% Similarity=0.109 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHhhcCCCEEEecCC------CchHHHHhHHccCCCcccccChHHHHHHHHhCCEEEecCchHHHHHHhcC
Q 020516 195 PIQVWAEIANGLREFRPLFVIPHE------KEREGVEDVVGDDASIVFITTPGQLAALINDSAGVIATNTAAIQLANARE 268 (325)
Q Consensus 195 p~e~~~~l~~~l~~~~~vvl~g~~------~e~~~~~~i~~~~~~~~~~~~~~el~ali~~a~l~I~~DTGp~HlAaAl~ 268 (325)
|..++++-+..+.++ .+++..|- =..+.++++.+++|+..++.-+.-..++.+.||. ||.-||....+.+..
T Consensus 164 PD~~Lg~~v~~l~~k-~vilw~G~C~vH~~~~~e~i~~~r~~~Pda~Vv~HPEc~~eV~a~AD~-vgSTs~~i~~v~~~~ 241 (319)
T PRK09375 164 PDQHLGRYVAKQTGA-DIILWPGHCIVHEEFTAEDLERLRAEYPDAKVLVHPECPPEVVALADF-VGSTSQIIKAAKASP 241 (319)
T ss_pred CchHHHHHHHHcCCC-EEEccCCcchhccCcCHHHHHHHHHHCcCCeEEEecCCCHHHHHhcCE-EecHHHHHHHHHhCC
Confidence 334666666555333 35544321 1235666777788886545444444566666775 455577777777775
Q ss_pred CCEEEEecCCCCC-----ccccCCCCCCceeeee--CCCCCCCCCCHHHHHHHHHHH
Q 020516 269 KPSIALFSSELKG-----RLFVPNAEEKKCTVIS--SRTGKLIDTPVEAVLNAMQIF 318 (325)
Q Consensus 269 ~P~iaLfg~t~p~-----~~~pp~~~~~~~~~~~--~~~~~m~~I~~~~V~~~~~~~ 318 (325)
... -|||+...- +-.| - ...+... .....|..+|++.|.+++.+.
T Consensus 242 ~~~-~iigTE~~L~~~l~~~~P-~---K~fi~~~~~~~C~~Mk~~tle~l~~~L~~~ 293 (319)
T PRK09375 242 AKK-FIVGTEIGIVHRLQKANP-D---KEFIPARSCAHCPTMKMITLEKLLEALEEE 293 (319)
T ss_pred CCe-EEEEccHHHHHHHHHHCC-C---CEEEECCCCCcCcChhhcCHHHHHHHHhcC
Confidence 444 566665321 1122 1 1222221 122359999999999988754
No 128
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=54.70 E-value=58 Score=31.86 Aligned_cols=94 Identities=12% Similarity=0.057 Sum_probs=58.2
Q ss_pred CCCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCC-CEEEecC-CCchH-----HHHhHHcc--CCCcccc
Q 020516 167 QGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFVIPH-EKERE-----GVEDVVGD--DASIVFI 237 (325)
Q Consensus 167 ~~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~-~vvl~g~-~~e~~-----~~~~i~~~--~~~~~~~ 237 (325)
+++.|.+..|+... .+.+++.+++..|...+ ++++..+ +.+.. .-+.+.+. ..++...
T Consensus 282 ~~svVyvsfGS~~~-------------~~~~~~~ela~gL~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~ 348 (477)
T PLN02863 282 DHKVVYVCFGSQVV-------------LTKEQMEALASGLEKSGVHFIWCVKEPVNEESDYSNIPSGFEDRVAGRGLVIR 348 (477)
T ss_pred CCceEEEEeeceec-------------CCHHHHHHHHHHHHhCCCcEEEEECCCcccccchhhCCHHHHHHhccCCEEec
Confidence 35677777766431 67789999999999887 6666544 32110 00111111 0122201
Q ss_pred cChHHHHHHHHh--CCEEEecCc-hHHHHHHhcCCCEEEE
Q 020516 238 TTPGQLAALIND--SAGVIATNT-AAIQLANAREKPSIAL 274 (325)
Q Consensus 238 ~~~~el~ali~~--a~l~I~~DT-Gp~HlAaAl~~P~iaL 274 (325)
.-..| ..++++ +.+||++.. +-++=|.+.|||+|++
T Consensus 349 ~w~PQ-~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~ 387 (477)
T PLN02863 349 GWAPQ-VAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAW 387 (477)
T ss_pred CCCCH-HHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeC
Confidence 11123 567776 789999984 7888999999999985
No 129
>PRK10342 glycerate kinase I; Provisional
Probab=53.54 E-value=86 Score=29.72 Aligned_cols=41 Identities=24% Similarity=0.237 Sum_probs=34.2
Q ss_pred HHHHHHHHhCCEEEecCc-------------hHHHHHHhcCCCEEEEecCCCCC
Q 020516 241 GQLAALINDSAGVIATNT-------------AAIQLANAREKPSIALFSSELKG 281 (325)
Q Consensus 241 ~el~ali~~a~l~I~~DT-------------Gp~HlAaAl~~P~iaLfg~t~p~ 281 (325)
-.+-..|+.||++|+... |...+|...++|+|+|=|.-...
T Consensus 276 ~~l~~~l~~ADLVITGEG~~D~QTl~GK~p~gVa~~A~~~~vPviai~G~~~~~ 329 (381)
T PRK10342 276 LNLEEHIHDCTLVITGEGRIDSQSIHGKVPIGVANVAKKYHKPVIGIAGSLTDD 329 (381)
T ss_pred cCHHHHhccCCEEEECCCcCcccccCCccHHHHHHHHHHhCCCEEEEecccCCC
Confidence 356789999999999886 77778888899999999985433
No 130
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=52.62 E-value=22 Score=29.50 Aligned_cols=33 Identities=9% Similarity=0.128 Sum_probs=20.8
Q ss_pred HHHHHHHHHhcCCcEEEEecCC-chHHHHHHHHh
Q 020516 49 YTDILGVMKNRYYDMVLSTKLA-GLGHAAFLFMT 81 (325)
Q Consensus 49 ~~~l~~~Lr~~~yDl~i~~~~~-~~~~~~~~~~~ 81 (325)
+..-++.++++++|++|..... .....+++++.
T Consensus 81 ~~~~~~il~r~rPdvii~nGpg~~vp~~~~~~l~ 114 (170)
T PF08660_consen 81 FLQSLRILRRERPDVIISNGPGTCVPVCLAAKLL 114 (170)
T ss_pred HHHHHHHHHHhCCCEEEEcCCceeeHHHHHHHHH
Confidence 3445567889999999988543 12334444444
No 131
>PLN02846 digalactosyldiacylglycerol synthase
Probab=51.97 E-value=91 Score=30.42 Aligned_cols=68 Identities=9% Similarity=0.027 Sum_probs=42.2
Q ss_pred CEEEecCCCchHHHHhHHccCC-CcccccChHHHHHHHHhCCEEEecC---chHHH--HHHhcCCCEEEEecCC
Q 020516 211 PLFVIPHEKEREGVEDVVGDDA-SIVFITTPGQLAALINDSAGVIATN---TAAIQ--LANAREKPSIALFSSE 278 (325)
Q Consensus 211 ~vvl~g~~~e~~~~~~i~~~~~-~~~~~~~~~el~ali~~a~l~I~~D---TGp~H--lAaAl~~P~iaLfg~t 278 (325)
.++|+|...+++.+++.....+ +..+..-...-..+++.+|+||-.. |-++= =|-|.|+|+|+-=.+.
T Consensus 261 ~l~ivGdGp~~~~L~~~a~~l~l~~~vf~G~~~~~~~~~~~DvFv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~ 334 (462)
T PLN02846 261 EVDLYGSGEDSDEVKAAAEKLELDVRVYPGRDHADPLFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS 334 (462)
T ss_pred EEEEECCCccHHHHHHHHHhcCCcEEEECCCCCHHHHHHhCCEEEECCCcccchHHHHHHHHcCCcEEEecCCC
Confidence 5778887667776666655432 1111111112236999999998763 33333 3689999999987665
No 132
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=51.14 E-value=25 Score=27.51 Aligned_cols=39 Identities=13% Similarity=-0.003 Sum_probs=29.0
Q ss_pred HHHHHHHhCCEEEecCchHHHHHHhcCCCEEEEecCCCC
Q 020516 242 QLAALINDSAGVIATNTAAIQLANAREKPSIALFSSELK 280 (325)
Q Consensus 242 el~ali~~a~l~I~~DTGp~HlAaAl~~P~iaLfg~t~p 280 (325)
-+..++++++.+||+|.|.-|+...+|.+--.+-|.-+.
T Consensus 8 ~~~~l~~~~~~~i~aDgGa~~l~~~~g~~Pd~iiGDfDS 46 (123)
T PF04263_consen 8 FFKNLWKNADFIIAADGGANRLYELFGIKPDLIIGDFDS 46 (123)
T ss_dssp HHHHHHHTTSEEEEETTHHHHHHHTTTT--SEEEC-SSS
T ss_pred HHHhhhhcCCEEEEEchHHHHHHHhcCCCCCEEEecCCC
Confidence 346689999999999999999988867666666676543
No 133
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=50.91 E-value=24 Score=33.29 Aligned_cols=41 Identities=27% Similarity=0.200 Sum_probs=34.7
Q ss_pred HHHHHHHHhCCEEEecCc-------------hHHHHHHhcCCCEEEEecCCCCC
Q 020516 241 GQLAALINDSAGVIATNT-------------AAIQLANAREKPSIALFSSELKG 281 (325)
Q Consensus 241 ~el~ali~~a~l~I~~DT-------------Gp~HlAaAl~~P~iaLfg~t~p~ 281 (325)
-.+-..|+.||++|+... |..++|.+.++|+|+|=|.-...
T Consensus 275 ~~l~~~l~~ADlVITGEG~~D~Qtl~GK~p~~Va~~A~~~~vPviai~G~v~~~ 328 (375)
T TIGR00045 275 LDLEQKIKDADLVITGEGRLDRQSLMGKAPVGVAKRAKKYGVPVIAIAGSLGDG 328 (375)
T ss_pred hCHHHHhcCCCEEEECCCcccccccCCchHHHHHHHHHHhCCeEEEEecccCCC
Confidence 356789999999999874 78889999999999999986444
No 134
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=49.62 E-value=2.4e+02 Score=26.97 Aligned_cols=36 Identities=17% Similarity=0.136 Sum_probs=30.3
Q ss_pred cChHHHHHHHHh--CCEEEecCchHHHHHHhcCCCEEEE
Q 020516 238 TTPGQLAALIND--SAGVIATNTAAIQLANAREKPSIAL 274 (325)
Q Consensus 238 ~~~~el~ali~~--a~l~I~~DTGp~HlAaAl~~P~iaL 274 (325)
.+..++..+++. .|++||+--+ .|+|..+|+|.+.+
T Consensus 358 ~d~~el~~~i~~~~pdliig~~~~-~~~a~~~~ip~i~~ 395 (428)
T cd01965 358 GDLWDLESLAKEEPVDLLIGNSHG-RYLARDLGIPLVRV 395 (428)
T ss_pred CCHHHHHHHhhccCCCEEEECchh-HHHHHhcCCCEEEe
Confidence 355788888888 8999998877 89999999999854
No 135
>PLN02562 UDP-glycosyltransferase
Probab=49.51 E-value=89 Score=30.30 Aligned_cols=132 Identities=10% Similarity=-0.097 Sum_probs=70.9
Q ss_pred CCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCC-CEEEecCCCch-HHHHhHHccCC-CcccccChHHHH
Q 020516 168 GKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFVIPHEKER-EGVEDVVGDDA-SIVFITTPGQLA 244 (325)
Q Consensus 168 ~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~-~vvl~g~~~e~-~~~~~i~~~~~-~~~~~~~~~el~ 244 (325)
+..|.+..|+... ..+.++..+++..|...+ ++++.-.+... ..-+.+.+..+ +.....- ---.
T Consensus 273 ~svvyvsfGS~~~------------~~~~~~~~~l~~~l~~~g~~fiW~~~~~~~~~l~~~~~~~~~~~~~v~~w-~PQ~ 339 (448)
T PLN02562 273 NSVIYISFGSWVS------------PIGESNVRTLALALEASGRPFIWVLNPVWREGLPPGYVERVSKQGKVVSW-APQL 339 (448)
T ss_pred CceEEEEeccccc------------CCCHHHHHHHHHHHHHCCCCEEEEEcCCchhhCCHHHHHHhccCEEEEec-CCHH
Confidence 3467777666431 268899999999998777 66643322111 11111111111 2211111 1235
Q ss_pred HHHHhCC--EEEecCc-hHHHHHHhcCCCEEEEecCCCCCccccCCCCCCceeeeeCCC-CCCCCCCHHHHHHHHHHHH
Q 020516 245 ALINDSA--GVIATNT-AAIQLANAREKPSIALFSSELKGRLFVPNAEEKKCTVISSRT-GKLIDTPVEAVLNAMQIFN 319 (325)
Q Consensus 245 ali~~a~--l~I~~DT-Gp~HlAaAl~~P~iaLfg~t~p~~~~pp~~~~~~~~~~~~~~-~~m~~I~~~~V~~~~~~~~ 319 (325)
.++++++ +||++.. |.+.=|...|+|+|++=--.+...+. +.+.-.... -.+.+++.++|.+++++++
T Consensus 340 ~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na-------~~~~~~~g~g~~~~~~~~~~l~~~v~~~l 411 (448)
T PLN02562 340 EVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNC-------AYIVDVWKIGVRISGFGQKEVEEGLRKVM 411 (448)
T ss_pred HHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHHH-------HHHHHHhCceeEeCCCCHHHHHHHHHHHh
Confidence 6787755 7999876 66778899999999852222211110 000000000 0133578999999998876
No 136
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=49.07 E-value=99 Score=30.19 Aligned_cols=67 Identities=6% Similarity=-0.029 Sum_probs=40.9
Q ss_pred hhcCC-CEEEecCC--CchHHHHhHHccCC-Ccccc--cChHHHHHHHH--hCCEEEecCchHHHHHHhcCCCEEEE
Q 020516 206 LREFR-PLFVIPHE--KEREGVEDVVGDDA-SIVFI--TTPGQLAALIN--DSAGVIATNTAAIQLANAREKPSIAL 274 (325)
Q Consensus 206 l~~~~-~vvl~g~~--~e~~~~~~i~~~~~-~~~~~--~~~~el~ali~--~a~l~I~~DTGp~HlAaAl~~P~iaL 274 (325)
+.+-+ .++.+|+. .+.++.. ..+..+ +...+ .+..++..+|+ ..|++||+--| .|+|..+|+|.+-+
T Consensus 354 l~ELGmevv~~g~~~~~~~~~~~-~~~~~~~~~~i~~~~d~~el~~~i~~~~pDl~ig~~~~-~~~a~k~gIP~~~~ 428 (466)
T TIGR01282 354 FEDLGMEVIGTGYEFAHNDDYER-TTKYMKDGTLIYDDVTHYEFEEFVEKLKPDLVGSGIKE-KYVFQKMGVPFRQM 428 (466)
T ss_pred HHHCCCEEEEEeeecCCHHHHHH-HHHhcCCCeEEeeCCCHHHHHHHHHHhCCCEEEecCCc-cceeeecCCCcccc
Confidence 44556 77777763 2333333 223322 22212 23356666655 58999999887 99999999999544
No 137
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=48.79 E-value=1.7e+02 Score=28.34 Aligned_cols=72 Identities=14% Similarity=0.246 Sum_probs=42.8
Q ss_pred HHHHhhcCC-CEEEecCC----CchHHHHhHHccCCCcccc--cChHHHHHHHHh--CCEEEecCchHHHHHHhcCCCEE
Q 020516 202 IANGLREFR-PLFVIPHE----KEREGVEDVVGDDASIVFI--TTPGQLAALIND--SAGVIATNTAAIQLANAREKPSI 272 (325)
Q Consensus 202 l~~~l~~~~-~vvl~g~~----~e~~~~~~i~~~~~~~~~~--~~~~el~ali~~--a~l~I~~DTGp~HlAaAl~~P~i 272 (325)
+++.|.+-+ .++.++.+ +|.+.+.++.. .+.... .+..++..+++. .|++||+-.+ .++|.-+|+|.+
T Consensus 341 l~~~l~elGmevv~~~t~~~~~~d~~~l~~~~~--~~~~v~~~~d~~e~~~~i~~~~pDl~ig~~~~-~~~a~k~giP~i 417 (456)
T TIGR01283 341 LVSALQDLGMEVVATGTQKGTEEDYARIRELMG--EGTVMLDDANPRELLKLLLEYKADLLIAGGKE-RYTALKLGIPFC 417 (456)
T ss_pred HHHHHHHCCCEEEEEeeecCCHHHHHHHHHHcC--CCeEEEeCCCHHHHHHHHhhcCCCEEEEccch-HHHHHhcCCCEE
Confidence 444455556 66666543 23333333322 122212 244677777766 7899997444 899999999998
Q ss_pred EEec
Q 020516 273 ALFS 276 (325)
Q Consensus 273 aLfg 276 (325)
-+.+
T Consensus 418 ~~~~ 421 (456)
T TIGR01283 418 DINH 421 (456)
T ss_pred Eccc
Confidence 8754
No 138
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=47.91 E-value=56 Score=30.03 Aligned_cols=80 Identities=24% Similarity=0.307 Sum_probs=55.8
Q ss_pred CCHHHHHHHHHHhhcCC-CEEEecCCCc---hHHHHhHHccC--CCcccc----cC----hHHHHHHHHhCCEEEecCc-
Q 020516 194 LPIQVWAEIANGLREFR-PLFVIPHEKE---REGVEDVVGDD--ASIVFI----TT----PGQLAALINDSAGVIATNT- 258 (325)
Q Consensus 194 wp~e~~~~l~~~l~~~~-~vvl~g~~~e---~~~~~~i~~~~--~~~~~~----~~----~~el~ali~~a~l~I~~DT- 258 (325)
-|.++..+|++.+...- .+-++.+|+| ...++++.... .++..+ ++ ++-..++..+.|++.++++
T Consensus 143 ~~v~q~i~lik~~~Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~vve~~v~~~ndi~~a~~~l~g~~d~i~~p~dn 222 (322)
T COG2984 143 LPVAQQIELIKALLPNAKSIGVLYNPGEANSVSLVEELKKEARKAGLEVVEAAVTSVNDIPRAVQALLGKVDVIYIPTDN 222 (322)
T ss_pred chHHHHHHHHHHhCCCCeeEEEEeCCCCcccHHHHHHHHHHHHHCCCEEEEEecCcccccHHHHHHhcCCCcEEEEecch
Confidence 58999999999998776 6768888877 55666665422 222211 11 1556778899999888875
Q ss_pred -------hHHHHHHhcCCCEEE
Q 020516 259 -------AAIQLANAREKPSIA 273 (325)
Q Consensus 259 -------Gp~HlAaAl~~P~ia 273 (325)
+.+|-|-.-++|+++
T Consensus 223 ~i~s~~~~l~~~a~~~kiPli~ 244 (322)
T COG2984 223 LIVSAIESLLQVANKAKIPLIA 244 (322)
T ss_pred HHHHHHHHHHHHHHHhCCCeec
Confidence 567777888888653
No 139
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=47.39 E-value=37 Score=25.72 Aligned_cols=38 Identities=26% Similarity=0.221 Sum_probs=29.8
Q ss_pred HHHHHHhCCEEEec------CchH---HHHHHhcCCCEEEEecCCCC
Q 020516 243 LAALINDSAGVIAT------NTAA---IQLANAREKPSIALFSSELK 280 (325)
Q Consensus 243 l~ali~~a~l~I~~------DTGp---~HlAaAl~~P~iaLfg~t~p 280 (325)
-...|++||++|.+ |+|. +=.|.|+|+|++++.-...+
T Consensus 55 d~~~i~~~D~via~l~~~~~d~Gt~~ElG~A~algkpv~~~~~d~~~ 101 (113)
T PF05014_consen 55 DLEGIRECDIVIANLDGFRPDSGTAFELGYAYALGKPVILLTEDDRP 101 (113)
T ss_dssp HHHHHHHSSEEEEEECSSS--HHHHHHHHHHHHTTSEEEEEECCCCT
T ss_pred HHHHHHHCCEEEEECCCCCCCCcHHHHHHHHHHCCCEEEEEEcCCcc
Confidence 36789999998874 5554 34789999999999987765
No 140
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=46.50 E-value=76 Score=31.03 Aligned_cols=38 Identities=11% Similarity=0.183 Sum_probs=29.8
Q ss_pred hHHHHHHHHh--CCEEEecCchHHHHHHhcCCCEEEEecCC
Q 020516 240 PGQLAALIND--SAGVIATNTAAIQLANAREKPSIALFSSE 278 (325)
Q Consensus 240 ~~el~ali~~--a~l~I~~DTGp~HlAaAl~~P~iaLfg~t 278 (325)
..++..+++. .|++||+ +.-.|+|.-+|+|.+-..+..
T Consensus 382 ~~e~~~~i~~~~pDliig~-s~~~~~a~k~giP~~~~~~~~ 421 (475)
T PRK14478 382 PRELYKMLKEAKADIMLSG-GRSQFIALKAGMPWLDINQER 421 (475)
T ss_pred HHHHHHHHhhcCCCEEEec-CchhhhhhhcCCCEEEccccc
Confidence 3677766655 8999997 666799999999999766643
No 141
>PRK15447 putative protease; Provisional
Probab=45.55 E-value=85 Score=28.61 Aligned_cols=84 Identities=14% Similarity=0.179 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHhhcCC-CEEEecCCC-------chHHHHhHH----ccCCCcc-----cccCh---HHHHHHHHh-CCE
Q 020516 194 LPIQVWAEIANGLREFR-PLFVIPHEK-------EREGVEDVV----GDDASIV-----FITTP---GQLAALIND-SAG 252 (325)
Q Consensus 194 wp~e~~~~l~~~l~~~~-~vvl~g~~~-------e~~~~~~i~----~~~~~~~-----~~~~~---~el~ali~~-a~l 252 (325)
||..+...+...+.+.+ .-|.+|.+. ..+...+.. +....+. .+... ..+..+++. .++
T Consensus 12 ~p~~~~~~~~~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l~~~~~~ 91 (301)
T PRK15447 12 WPKETVRDFYQRAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLVENGEFL 91 (301)
T ss_pred CCCCCHHHHHHHHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHHhcCCCE
Confidence 99999999999998877 666666432 112222222 1111111 01111 234444444 368
Q ss_pred EEecCchHHHHHHhcCCCEEEEecC
Q 020516 253 VIATNTAAIQLANAREKPSIALFSS 277 (325)
Q Consensus 253 ~I~~DTGp~HlAaAl~~P~iaLfg~ 277 (325)
++.+|-|.++++.-.|.|+++=|.-
T Consensus 92 v~v~d~g~l~~~~e~~~~l~~d~~l 116 (301)
T PRK15447 92 VEANDLGAVRLLAERGLPFVAGPAL 116 (301)
T ss_pred EEEeCHHHHHHHHhcCCCEEEeccc
Confidence 9999999999999888887665543
No 142
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=44.54 E-value=2.9e+02 Score=26.37 Aligned_cols=36 Identities=6% Similarity=0.209 Sum_probs=27.8
Q ss_pred HHHHHHH--hCCEEEecCchHHHHHHhcCCCEEEEecCC
Q 020516 242 QLAALIN--DSAGVIATNTAAIQLANAREKPSIALFSSE 278 (325)
Q Consensus 242 el~ali~--~a~l~I~~DTGp~HlAaAl~~P~iaLfg~t 278 (325)
++...++ ..|++||+-.+- |+|..+|+|.+.+.+..
T Consensus 349 e~~~~~~~~~pdliig~s~~~-~~a~~lgip~~~~~~~~ 386 (415)
T cd01977 349 EFFEILEMLKPDIILTGPRVG-ELVKKLHVPYVNIHAYH 386 (415)
T ss_pred HHHHHHHhcCCCEEEecCccc-hhhhhcCCCEEeccCCc
Confidence 4444444 489999998777 99999999999986543
No 143
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=42.68 E-value=65 Score=30.17 Aligned_cols=72 Identities=18% Similarity=0.134 Sum_probs=45.2
Q ss_pred hhHhhhCCCCEEEEEeccCchhhhhhCCCCceEEEecC--CCC--C-------CCchhHHH-----HHHHHHhcCCcEEE
Q 020516 2 YLHITRYPGVLIDVIASARGKQTFELNKNVRWANVYDL--DDD--W-------PEPAEYTD-----ILGVMKNRYYDMVL 65 (325)
Q Consensus 2 ~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~Vd~v~~~~~--~~~--~-------~~~~~~~~-----l~~~Lr~~~yDl~i 65 (325)
++|-+.|++-+|.+++...-.+-|..-..||-| .++. +.. + -....+.+ ++.+.+..++|++|
T Consensus 33 ~aLv~d~~~~~Il~IsG~~~~~~F~~~~gVd~V-~LPsl~k~~~G~~~~~d~~~~l~e~~~~Rs~lil~t~~~fkPDi~I 111 (400)
T COG4671 33 HALVEDYLGFDILIISGGPPAGGFPGPAGVDFV-KLPSLIKGDNGEYGLVDLDGDLEETKKLRSQLILSTAETFKPDIFI 111 (400)
T ss_pred HHHhhcccCceEEEEeCCCccCCCCCcccCceE-ecCceEecCCCceeeeecCCCHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 467788999999999988777778877778654 2331 100 0 11223332 34567889999988
Q ss_pred -EecCCchHH
Q 020516 66 -STKLAGLGH 74 (325)
Q Consensus 66 -~~~~~~~~~ 74 (325)
+.-+.|.+-
T Consensus 112 Vd~~P~Glr~ 121 (400)
T COG4671 112 VDKFPFGLRF 121 (400)
T ss_pred Eeccccchhh
Confidence 444555544
No 144
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=42.43 E-value=53 Score=26.52 Aligned_cols=42 Identities=17% Similarity=0.119 Sum_probs=33.4
Q ss_pred HHHHHHHHhCCEEE------ecCchHHHHHHhcCCCEEEEecCCCCCc
Q 020516 241 GQLAALINDSAGVI------ATNTAAIQLANAREKPSIALFSSELKGR 282 (325)
Q Consensus 241 ~el~ali~~a~l~I------~~DTGp~HlAaAl~~P~iaLfg~t~p~~ 282 (325)
.+...++..||+++ .|+|-..=|+.+-.-..+.|||||.|..
T Consensus 54 ~~~~~~l~~aD~viiTGsTlvN~Ti~~iL~~~~~~~~vil~GpS~~~~ 101 (147)
T PF04016_consen 54 EDAEEILPWADVVIITGSTLVNGTIDDILELARNAREVILYGPSAPLH 101 (147)
T ss_dssp GGHHHHGGG-SEEEEECHHCCTTTHHHHHHHTTTSSEEEEESCCGGS-
T ss_pred HHHHHHHccCCEEEEEeeeeecCCHHHHHHhCccCCeEEEEecCchhh
Confidence 56788999999976 4778777888888789999999998764
No 145
>PLN02173 UDP-glucosyl transferase family protein
Probab=42.32 E-value=1.1e+02 Score=29.73 Aligned_cols=136 Identities=10% Similarity=0.013 Sum_probs=70.5
Q ss_pred CCCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCCCEEEecCCCchH-HHHhHHccC-C-CcccccChHHH
Q 020516 167 QGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFRPLFVIPHEKERE-GVEDVVGDD-A-SIVFITTPGQL 243 (325)
Q Consensus 167 ~~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~~vvl~g~~~e~~-~~~~i~~~~-~-~~~~~~~~~el 243 (325)
++..|.+.-|+.. ..+.++..+++..|... ++++.--+.+.+ .-+.+.+.. + +..+..=.. -
T Consensus 263 ~~svvyvsfGS~~-------------~~~~~~~~ela~gLs~~-~flWvvr~~~~~~lp~~~~~~~~~~~~~i~~W~P-Q 327 (449)
T PLN02173 263 QGSVVYIAFGSMA-------------KLSSEQMEEIASAISNF-SYLWVVRASEESKLPPGFLETVDKDKSLVLKWSP-Q 327 (449)
T ss_pred CCceEEEEecccc-------------cCCHHHHHHHHHHhcCC-CEEEEEeccchhcccchHHHhhcCCceEEeCCCC-H
Confidence 3457777776642 27889999999999333 444333221111 111121111 1 121111112 3
Q ss_pred HHHHHhCC--EEEecCc-hHHHHHHhcCCCEEEEecCCCCCccccCCCCC--CceeeeeCCCCCCCCCCHHHHHHHHHHH
Q 020516 244 AALINDSA--GVIATNT-AAIQLANAREKPSIALFSSELKGRLFVPNAEE--KKCTVISSRTGKLIDTPVEAVLNAMQIF 318 (325)
Q Consensus 244 ~ali~~a~--l~I~~DT-Gp~HlAaAl~~P~iaLfg~t~p~~~~pp~~~~--~~~~~~~~~~~~m~~I~~~~V~~~~~~~ 318 (325)
..++++++ +||+++. +-++=|.+.|||+|++=--.+.....- +..+ ..-+.+...+ .-.-++.++|.++++++
T Consensus 328 ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~-~v~~~~g~Gv~v~~~~-~~~~~~~e~v~~av~~v 405 (449)
T PLN02173 328 LQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAK-YIQDVWKVGVRVKAEK-ESGIAKREEIEFSIKEV 405 (449)
T ss_pred HHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchHHHH-HHHHHhCceEEEeecc-cCCcccHHHHHHHHHHH
Confidence 45888877 8999876 678889999999998521111100000 0000 0011111111 00136899999999987
Q ss_pred H
Q 020516 319 N 319 (325)
Q Consensus 319 ~ 319 (325)
+
T Consensus 406 m 406 (449)
T PLN02173 406 M 406 (449)
T ss_pred h
Confidence 6
No 146
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=42.03 E-value=1.3e+02 Score=29.37 Aligned_cols=90 Identities=12% Similarity=0.104 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHHhhcCC--CEEEecCCCch-HHHHhHHccC---C-Cccccc--ChHHHHHHHHhCCEEEec-----Cch
Q 020516 194 LPIQVWAEIANGLREFR--PLFVIPHEKER-EGVEDVVGDD---A-SIVFIT--TPGQLAALINDSAGVIAT-----NTA 259 (325)
Q Consensus 194 wp~e~~~~l~~~l~~~~--~vvl~g~~~e~-~~~~~i~~~~---~-~~~~~~--~~~el~ali~~a~l~I~~-----DTG 259 (325)
...+.+.-.++-|.+-. .++|...+... +.+.+..+.. + .+.+.. ...+.......+|+++-+ .|=
T Consensus 297 I~p~~l~~W~~IL~~vP~S~L~L~~~~~~~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~~~~~~DI~LDT~p~nG~TT 376 (468)
T PF13844_consen 297 ISPETLDLWARILKAVPNSRLWLLRFPASGEARLRRRFAAHGVDPDRIIFSPVAPREEHLRRYQLADICLDTFPYNGGTT 376 (468)
T ss_dssp --HHHHHHHHHHHHHSTTEEEEEEETSTTHHHHHHHHHHHTTS-GGGEEEEE---HHHHHHHGGG-SEEE--SSS--SHH
T ss_pred CCHHHHHHHHHHHHhCCCcEEEEeeCCHHHHHHHHHHHHHcCCChhhEEEcCCCCHHHHHHHhhhCCEEeeCCCCCCcHH
Confidence 45555555555554443 35555555432 3333333222 1 122221 125667788999998743 233
Q ss_pred HHHHHHhcCCCEEEEecCCCCCccc
Q 020516 260 AIQLANAREKPSIALFSSELKGRLF 284 (325)
Q Consensus 260 p~HlAaAl~~P~iaLfg~t~p~~~~ 284 (325)
.++ |-..|||+|++=|.+-..|..
T Consensus 377 t~d-ALwmGVPvVTl~G~~~~sR~~ 400 (468)
T PF13844_consen 377 TLD-ALWMGVPVVTLPGETMASRVG 400 (468)
T ss_dssp HHH-HHHHT--EEB---SSGGGSHH
T ss_pred HHH-HHHcCCCEEeccCCCchhHHH
Confidence 444 678899999999998777654
No 147
>PLN02167 UDP-glycosyltransferase family protein
Probab=42.01 E-value=1.6e+02 Score=28.69 Aligned_cols=93 Identities=10% Similarity=0.023 Sum_probs=54.2
Q ss_pred CCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCC-CEEEe-cCCCch--HH---H-HhHHccCCC-ccccc
Q 020516 168 GKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFVI-PHEKER--EG---V-EDVVGDDAS-IVFIT 238 (325)
Q Consensus 168 ~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~-~vvl~-g~~~e~--~~---~-~~i~~~~~~-~~~~~ 238 (325)
+..|.+..|+-. ..+.+++.+++..|...+ ++++. +.+.+. +. . +.+.+...+ .....
T Consensus 280 ~svvyvsfGS~~-------------~~~~~~~~ela~~l~~~~~~flw~~~~~~~~~~~~~~~lp~~~~er~~~rg~v~~ 346 (475)
T PLN02167 280 SSVVFLCFGSLG-------------SLPAPQIKEIAQALELVGCRFLWSIRTNPAEYASPYEPLPEGFMDRVMGRGLVCG 346 (475)
T ss_pred CceEEEeecccc-------------cCCHHHHHHHHHHHHhCCCcEEEEEecCcccccchhhhCChHHHHHhccCeeeec
Confidence 457777766642 167889999999998877 66654 322111 00 0 011110000 00011
Q ss_pred ChHHHHHHHHh--CCEEEecCc-hHHHHHHhcCCCEEEE
Q 020516 239 TPGQLAALIND--SAGVIATNT-AAIQLANAREKPSIAL 274 (325)
Q Consensus 239 ~~~el~ali~~--a~l~I~~DT-Gp~HlAaAl~~P~iaL 274 (325)
- ---..++++ +++||++.. +.+.=|.+.|||+|++
T Consensus 347 w-~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~ 384 (475)
T PLN02167 347 W-APQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATW 384 (475)
T ss_pred c-CCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEec
Confidence 1 112457877 558999984 5788899999999985
No 148
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=41.94 E-value=3.6e+02 Score=26.74 Aligned_cols=79 Identities=10% Similarity=0.107 Sum_probs=47.4
Q ss_pred HHHHHHHHhhcCC--CEEEecCCCchH---HHHhHHccCC---Cccc-c-cChHHHHHHHHh--CCEEEecCchHHHHHH
Q 020516 198 VWAEIANGLREFR--PLFVIPHEKERE---GVEDVVGDDA---SIVF-I-TTPGQLAALIND--SAGVIATNTAAIQLAN 265 (325)
Q Consensus 198 ~~~~l~~~l~~~~--~vvl~g~~~e~~---~~~~i~~~~~---~~~~-~-~~~~el~ali~~--a~l~I~~DTGp~HlAa 265 (325)
....+++.|.+-+ ++.++.+-...+ .++++....+ +... . .+..++..+|.. .|++||+--| -++|.
T Consensus 374 ~~~~l~~fL~ElGmepv~v~~~~~~~~~~~~l~~ll~~~~~~~~~~v~~~~Dl~~l~~~l~~~~~DlliG~s~~-k~~a~ 452 (515)
T TIGR01286 374 FVMGLVRFVLELGCEPVHILCTNGTKRWKAEMKALLAASPYGQNATVWIGKDLWHLRSLVFTEPVDFLIGNSYG-KYIQR 452 (515)
T ss_pred HHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHHHhcCCCCCccEEEeCCCHHHHHHHHhhcCCCEEEECchH-HHHHH
Confidence 5556666666666 333333333333 3334443322 1111 1 345677777654 9999999887 89999
Q ss_pred hcCCCEEEEecC
Q 020516 266 AREKPSIALFSS 277 (325)
Q Consensus 266 Al~~P~iaLfg~ 277 (325)
-+|+|.|-+--|
T Consensus 453 ~~giPlir~gfP 464 (515)
T TIGR01286 453 DTLVPLIRIGFP 464 (515)
T ss_pred HcCCCEEEecCC
Confidence 999998776444
No 149
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=41.05 E-value=3.4e+02 Score=26.21 Aligned_cols=74 Identities=8% Similarity=0.085 Sum_probs=43.7
Q ss_pred HHH-HhhcCC-CEEEecCCC-chHHHHhHHccCCC-cccccC--hHHHHHHHHh--CCEEEecCchHHHHHHhcCCCEEE
Q 020516 202 IAN-GLREFR-PLFVIPHEK-EREGVEDVVGDDAS-IVFITT--PGQLAALIND--SAGVIATNTAAIQLANAREKPSIA 273 (325)
Q Consensus 202 l~~-~l~~~~-~vvl~g~~~-e~~~~~~i~~~~~~-~~~~~~--~~el~ali~~--a~l~I~~DTGp~HlAaAl~~P~ia 273 (325)
+++ .+.+-+ .++.++.+. ..+..+......+. ...+.. ..++...++. .|++||+--| .|+|.-+|+|.+-
T Consensus 332 ~~~~ll~elGm~v~~~~~~~~~~~~~~~~l~~l~~~~~~v~~~~~~e~~~~i~~~~pdllig~s~~-~~~A~~lgip~~~ 410 (443)
T TIGR01862 332 WIGSAEEDLGMEVVAVGYEFAHEDDYEKTMKRMGEGTLLIDDPNELEFEEILEKLKPDIIFSGIKE-KFVAQKLGVPYRQ 410 (443)
T ss_pred HHHHHHHHCCCEEEEeccccccHHHHHHHHHhCCCceEEecCCCHHHHHHHHHhcCCCEEEEcCcc-hhhhhhcCCCeEe
Confidence 444 334446 666666654 23222333333332 121222 2455555544 8999999888 8999999999998
Q ss_pred Eec
Q 020516 274 LFS 276 (325)
Q Consensus 274 Lfg 276 (325)
+++
T Consensus 411 ~~~ 413 (443)
T TIGR01862 411 MHS 413 (443)
T ss_pred cCC
Confidence 754
No 150
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=40.80 E-value=2e+02 Score=26.30 Aligned_cols=86 Identities=15% Similarity=0.170 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHhhcCC-CEEEec---------CCCchHHHHhHHccC--CCccc-ccCh-----H------HHHHHHHh
Q 020516 194 LPIQVWAEIANGLREFR-PLFVIP---------HEKEREGVEDVVGDD--ASIVF-ITTP-----G------QLAALIND 249 (325)
Q Consensus 194 wp~e~~~~l~~~l~~~~-~vvl~g---------~~~e~~~~~~i~~~~--~~~~~-~~~~-----~------el~ali~~ 249 (325)
+..+++.+-++.|.+.+ .+++-. ...+++.++++.+.+ |++.. ++.. . +...+-++
T Consensus 15 ~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~g~~rlL~~lD~~~i~~~ 94 (308)
T cd07062 15 ELPHRLERAKKRLENLGFEVVEGPNALKGDKYLSASPEERAEELMAAFADPSIKAIIPTIGGDDSNELLPYLDYELIKKN 94 (308)
T ss_pred cCHHHHHHHHHHHHhCCCEEEEecccccccccccCCHHHHHHHHHHHhcCCCCCEEEECCcccCHhhhhhhcCHHHHhhC
Confidence 34688999999998877 555442 234566777777654 33221 1111 1 12334467
Q ss_pred CCEEEe-cCchHHHHHHhcCCCEEEEecCCC
Q 020516 250 SAGVIA-TNTAAIQLANAREKPSIALFSSEL 279 (325)
Q Consensus 250 a~l~I~-~DTGp~HlAaAl~~P~iaLfg~t~ 279 (325)
-+.||| .|.-.+|+|-...+-.++++||..
T Consensus 95 PK~fiGySDiTaL~~al~~~~g~~t~hGp~~ 125 (308)
T cd07062 95 PKIFIGYSDITALHLAIYKKTGLVTYYGPNL 125 (308)
T ss_pred CCEEEeccHHHHHHHHHHHhcCCeEEECccc
Confidence 788998 688999999988888899999853
No 151
>COG1036 Archaeal flavoproteins [Energy production and conversion]
Probab=40.63 E-value=18 Score=29.79 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=22.7
Q ss_pred ChhHhhhCCCCEEEEEeccCchhhhh
Q 020516 1 MYLHITRYPGVLIDVIASARGKQTFE 26 (325)
Q Consensus 1 ~~~Lk~~~P~a~I~~l~~~~~~~l~~ 26 (325)
|..+|+.||+.+|+++.++....+++
T Consensus 29 mk~lk~~~~~~~v~v~lSkageeVvk 54 (187)
T COG1036 29 MKELKKEYGDVEVDVFLSKAGEEVVK 54 (187)
T ss_pred HHHHHhhcCCceEEEeehhhHHHHHH
Confidence 67899999999999999998877755
No 152
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=39.51 E-value=3.1e+02 Score=29.44 Aligned_cols=76 Identities=17% Similarity=0.226 Sum_probs=45.1
Q ss_pred HHHHhhcCC-CEEEecCCC----chHHHHhHHccCCCcccccChHHHHHHHH--hCCEEEecCchHHHHHHhcCCCEEEE
Q 020516 202 IANGLREFR-PLFVIPHEK----EREGVEDVVGDDASIVFITTPGQLAALIN--DSAGVIATNTAAIQLANAREKPSIAL 274 (325)
Q Consensus 202 l~~~l~~~~-~vvl~g~~~----e~~~~~~i~~~~~~~~~~~~~~el~ali~--~a~l~I~~DTGp~HlAaAl~~P~iaL 274 (325)
+++.|.+-+ .++.++++. |.+..+++....+.+..-.+..++..+|+ ..|++||+--| .++|..+|+|.+-+
T Consensus 335 la~~l~elGmevv~~g~~~~~~~d~~~~~~~~~~~~~vi~~~d~~el~~~i~~~~pDLlig~~~~-~~~a~k~giP~~~~ 413 (917)
T PRK14477 335 MVNALRELGVEVLAAGTQNSTLEDFARMKALMHKDAHIIEDTSTAGLLRVMREKMPDLIVAGGKT-KFLALKTRTPFLDI 413 (917)
T ss_pred HHHHHHHCCCEEEEEcCCCCCHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHhcCCCEEEecCch-hhHHHHcCCCeEEc
Confidence 444555556 677676542 23333333332221211123466766655 47899984444 89999999999988
Q ss_pred ecCC
Q 020516 275 FSSE 278 (325)
Q Consensus 275 fg~t 278 (325)
.|..
T Consensus 414 ~~~~ 417 (917)
T PRK14477 414 NHGR 417 (917)
T ss_pred cCCc
Confidence 8754
No 153
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=39.34 E-value=99 Score=28.29 Aligned_cols=73 Identities=15% Similarity=0.081 Sum_probs=43.4
Q ss_pred HHHcCCCCCCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCC-CEEEecCCCchHHHHhHHccCCCccccc
Q 020516 160 YKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFVIPHEKEREGVEDVVGDDASIVFIT 238 (325)
Q Consensus 160 ~~~~~~~~~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~-~vvl~g~~~e~~~~~~i~~~~~~~~~~~ 238 (325)
....|..++.+|+||||+... +|.-..+++++-.+.+.+.. ..+++ +.... ..
T Consensus 139 ~~~lG~~~~~~vViHpG~~~~----------~ke~al~r~~~~l~~l~~~~~~~L~L-------------EN~~~---~~ 192 (303)
T PRK02308 139 LDLMGIDDSSKINIHVGGAYG----------DKEKALERFIENIKKLPESIKKRLTL-------------ENDDK---TY 192 (303)
T ss_pred HHHCCCCCCCEEEECCCccCC----------CHHHHHHHHHHHHHHhhHHhCCEEEE-------------eeCCC---CC
Confidence 344555544599999998542 34346666766666664433 22222 00000 13
Q ss_pred ChHHHHHHHHhCCEEEecCc
Q 020516 239 TPGQLAALINDSAGVIATNT 258 (325)
Q Consensus 239 ~~~el~ali~~a~l~I~~DT 258 (325)
+..|+..+++..+.-||-||
T Consensus 193 t~~ell~I~e~~~ipv~~D~ 212 (303)
T PRK02308 193 TVEELLYICEKLGIPVVFDY 212 (303)
T ss_pred CHHHHHHHHHHcCCCEEEeH
Confidence 55788888888888899993
No 154
>PLN03007 UDP-glucosyltransferase family protein
Probab=39.10 E-value=1.6e+02 Score=28.80 Aligned_cols=139 Identities=12% Similarity=0.010 Sum_probs=73.6
Q ss_pred CCCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCC-CEEEecCCC-ch-H---HH-HhHHcc--CCCcccc
Q 020516 167 QGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFVIPHEK-ER-E---GV-EDVVGD--DASIVFI 237 (325)
Q Consensus 167 ~~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~-~vvl~g~~~-e~-~---~~-~~i~~~--~~~~~~~ 237 (325)
++..|.++-|+... .+.+++.+++..|...+ +|++.-.+. +. + .. +.+.+. ..++...
T Consensus 284 ~~svvyvsfGS~~~-------------~~~~~~~~~~~~l~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~ 350 (482)
T PLN03007 284 PDSVIYLSFGSVAS-------------FKNEQLFEIAAGLEGSGQNFIWVVRKNENQGEKEEWLPEGFEERTKGKGLIIR 350 (482)
T ss_pred CCceEEEeecCCcC-------------CCHHHHHHHHHHHHHCCCCEEEEEecCCcccchhhcCCHHHHHHhccCCEEEe
Confidence 45677787776532 56789999999998776 666543321 10 1 11 111111 1122211
Q ss_pred cChHHHHHHHHhCCE--EEecCc-hHHHHHHhcCCCEEEEecCCCCCccccCCCCC--CceeeeeCCCC---CCCCCCHH
Q 020516 238 TTPGQLAALINDSAG--VIATNT-AAIQLANAREKPSIALFSSELKGRLFVPNAEE--KKCTVISSRTG---KLIDTPVE 309 (325)
Q Consensus 238 ~~~~el~ali~~a~l--~I~~DT-Gp~HlAaAl~~P~iaLfg~t~p~~~~pp~~~~--~~~~~~~~~~~---~m~~I~~~ 309 (325)
.-..| ..+++++++ ||++.. +-++=|...|||+|++=--.+.....- +..+ ..-+.+..... ....++.+
T Consensus 351 ~w~PQ-~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~-~~~~~~~~G~~~~~~~~~~~~~~~~~~~ 428 (482)
T PLN03007 351 GWAPQ-VLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPVGAEQFYNEK-LVTQVLRTGVSVGAKKLVKVKGDFISRE 428 (482)
T ss_pred cCCCH-HHHhccCccceeeecCcchHHHHHHHcCCCeeeccchhhhhhhHH-HHHHhhcceeEeccccccccccCcccHH
Confidence 11123 578888865 999885 567778999999998622111110000 0000 00000110000 12468999
Q ss_pred HHHHHHHHHHH
Q 020516 310 AVLNAMQIFNE 320 (325)
Q Consensus 310 ~V~~~~~~~~~ 320 (325)
+|.+++++++.
T Consensus 429 ~l~~av~~~m~ 439 (482)
T PLN03007 429 KVEKAVREVIV 439 (482)
T ss_pred HHHHHHHHHhc
Confidence 99999998763
No 155
>COG3613 Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism]
Probab=38.95 E-value=38 Score=28.14 Aligned_cols=36 Identities=25% Similarity=0.207 Sum_probs=29.7
Q ss_pred HHHHHHhCCEEEec--------CchHH---HHHHhcCCCEEEEecCC
Q 020516 243 LAALINDSAGVIAT--------NTAAI---QLANAREKPSIALFSSE 278 (325)
Q Consensus 243 l~ali~~a~l~I~~--------DTGp~---HlAaAl~~P~iaLfg~t 278 (325)
=.++|.+||++|.| |||.+ =.|.|+|+||+++.-..
T Consensus 62 d~~~i~~aD~vla~ld~fr~~~DsGTa~E~GYa~AlgKPv~~~~~d~ 108 (172)
T COG3613 62 DIKLIDQADIVLANLDPFRPDPDSGTAFELGYAIALGKPVYAYRKDA 108 (172)
T ss_pred HHHHHhhcCEEEEecCCCCCCCCCcchHHHHHHHHcCCceEEEeecc
Confidence 46789999998874 68875 47899999999999764
No 156
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=38.92 E-value=22 Score=31.55 Aligned_cols=44 Identities=5% Similarity=0.052 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHHHHhhcCC-CEEEecCCCch--HHHHhHHccCCCcc
Q 020516 192 SLLPIQVWAEIANGLREFR-PLFVIPHEKER--EGVEDVVGDDASIV 235 (325)
Q Consensus 192 K~wp~e~~~~l~~~l~~~~-~vvl~g~~~e~--~~~~~i~~~~~~~~ 235 (325)
+.-+.+-+.+|+++..+++ +|+++||..+- +..+.+.+..|++.
T Consensus 90 rv~G~Dl~~~Ll~~a~~~~~~vfllGgkp~V~~~a~~~l~~~~p~l~ 136 (253)
T COG1922 90 RVAGTDLVEALLKRAAEEGKRVFLLGGKPGVAEQAAAKLRAKYPGLK 136 (253)
T ss_pred cCChHHHHHHHHHHhCccCceEEEecCCHHHHHHHHHHHHHHCCCce
Confidence 4567889999999998886 99999986653 34455667788654
No 157
>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation. NodZ is required for the addition of a 2-O-methylfucose residue to the terminal reducing N-acetylglucosamine of the nodulation signal. This substitution is essential for the biological activity of this molecule. Mutations in nodZ result in defective nodulation. nodZ represents a unique nodulation gene that is not under the control of NodD and yet is essential for the synthesis of an active nodulation signal [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3SIX_A 2HLH_A 2HHC_A 3SIW_A 2OCX_A.
Probab=38.90 E-value=1.8e+02 Score=26.69 Aligned_cols=127 Identities=14% Similarity=0.209 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCeEEEecCCCCcccccccCCCCCCCCCHH--HHHHHHHHh---hcCC---CEEEecCCCch
Q 020516 150 RRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQ--VWAEIANGL---REFR---PLFVIPHEKER 221 (325)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~i~i~~gas~~~~~~~~r~~~~K~wp~e--~~~~l~~~l---~~~~---~vvl~g~~~e~ 221 (325)
++.++..+.+..++ ..+...|++|.=.+..-+.|. .+..|-.+ ...+++..+ ..+. .+.|+-.-+..
T Consensus 150 ~eIqarID~iy~eh-f~g~~~IGVHVRhGngeD~~~----h~~~~~D~e~~L~~V~~ai~~ak~~~~~k~~~IFLATDSa 224 (321)
T PF05830_consen 150 PEIQARIDAIYREH-FAGYSVIGVHVRHGNGEDIMD----HAPYWADEERALRQVCTAIDKAKALAPPKPVRIFLATDSA 224 (321)
T ss_dssp HHHHHHHHHHHHHH-TTTSEEEEEEE-------------------HHHHHHHHHHHHHHHHHHTS--SS-EEEEEEES-H
T ss_pred HHHHHHHHHHHHHH-cCCCceEEEEEeccCCcchhc----cCccccCchHHHHHHHHHHHHHHhccCCCCeeEEEecCcH
Confidence 33344445544444 233458889974332222221 12235444 234444333 3222 23333233344
Q ss_pred HHHHhHHccCCCcccccC----h-------------H---HH--HHHHHhCCEEE--ecCchHHHHHHhcCCCEEEEecC
Q 020516 222 EGVEDVVGDDASIVFITT----P-------------G---QL--AALINDSAGVI--ATNTAAIQLANAREKPSIALFSS 277 (325)
Q Consensus 222 ~~~~~i~~~~~~~~~~~~----~-------------~---el--~ali~~a~l~I--~~DTGp~HlAaAl~~P~iaLfg~ 277 (325)
+..+++.+.+|++..+.. . + .+ +-||++||.+| +..|+-.=+|.-+. |-|.=|-=
T Consensus 225 eVid~fr~~FPdiiti~k~F~~~~~g~Lhs~~~g~~gg~~ALIDM~LLSrCD~LIr~~ptS~Fsr~asl~~-pr~~~~dl 303 (321)
T PF05830_consen 225 EVIDQFRKKFPDIITIPKQFPASQAGPLHSAAVGIEGGESALIDMYLLSRCDYLIRFPPTSAFSRYASLFV-PRVIEFDL 303 (321)
T ss_dssp HHHHHHHHHSTTEE----------------HHHHHHHHHHHHHHHHHHTTSSEEEEESTT-GGGHHHHHH--SEEEEE-T
T ss_pred HHHHHHHHHCCCeEEcccccCCCCCCcCcccccccchHHHHHHHHHHHHhCCeEEEcCCCchhhhHHHHhc-chheeecc
Confidence 566677777776531110 0 0 01 45899999999 78999999998665 76666655
Q ss_pred CCCCc
Q 020516 278 ELKGR 282 (325)
Q Consensus 278 t~p~~ 282 (325)
.+|.+
T Consensus 304 ~~p~~ 308 (321)
T PF05830_consen 304 NDPGR 308 (321)
T ss_dssp TSTT-
T ss_pred CCCce
Confidence 55554
No 158
>PF02595 Gly_kinase: Glycerate kinase family; InterPro: IPR004381 This family includes glycerate kinase 2 (2.7.1.31 from EC), which catalyses the phosphorylation of (R)-glycerate to 3-phospho-(R)-glycerate in the presence of ATP. These proteins consist of two different alpha/beta domains: domain 1 has a flavodoxin-like fold, while domain 2 has a restriction enzyme-like fold (domain 2 is inserted into domain 1).; GO: 0008887 glycerate kinase activity, 0031388 organic acid phosphorylation; PDB: 3CWC_B 1TO6_A.
Probab=38.64 E-value=13 Score=35.11 Aligned_cols=40 Identities=25% Similarity=0.216 Sum_probs=28.1
Q ss_pred HHHHHHHhCCEEEecC-------------chHHHHHHhcCCCEEEEecCCCCC
Q 020516 242 QLAALINDSAGVIATN-------------TAAIQLANAREKPSIALFSSELKG 281 (325)
Q Consensus 242 el~ali~~a~l~I~~D-------------TGp~HlAaAl~~P~iaLfg~t~p~ 281 (325)
.+...|+.||++|+.. .|..++|...++|+|++-|.-...
T Consensus 277 ~l~~~l~~aDlVITGEG~~D~Qtl~GK~p~~Va~~A~~~~vPviav~G~~~~~ 329 (377)
T PF02595_consen 277 GLEERLEDADLVITGEGRLDAQTLAGKVPGGVARLAKKHGVPVIAVAGSVDLD 329 (377)
T ss_dssp THHHHCCC-SEEEE--CECSTTTTTTCHHHHHHCCHCCTT--EEEEECEC-TT
T ss_pred CHHHHhcCCCEEEECccccccccCCCcHHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence 4678999999999986 256777789999999999986544
No 159
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=38.58 E-value=1.2e+02 Score=29.15 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=28.8
Q ss_pred HHHHHHH-hCCEEEecCchHHHHHHhcCCCEEEEecCC
Q 020516 242 QLAALIN-DSAGVIATNTAAIQLANAREKPSIALFSSE 278 (325)
Q Consensus 242 el~ali~-~a~l~I~~DTGp~HlAaAl~~P~iaLfg~t 278 (325)
++..+-+ ..|++||+ |+...+|..+|+|.+-+.=|.
T Consensus 347 ~~~~l~~~~pDllig~-s~~~~~A~k~gIP~vr~g~pi 383 (422)
T TIGR02015 347 DMEAVLEFEPDLAIGT-TPLVQFAKEHGIPALYFTNLI 383 (422)
T ss_pred HHHHHhhCCCCEEEcC-CcchHHHHHcCCCEEEecchh
Confidence 3444444 79999999 999999999999999877443
No 160
>COG1412 Uncharacterized proteins of PilT N-term./Vapc superfamily [General function prediction only]
Probab=38.03 E-value=50 Score=26.38 Aligned_cols=32 Identities=13% Similarity=0.044 Sum_probs=26.5
Q ss_pred HHhCCEEEecCchHHHHHHhcCCCEEEEecCC
Q 020516 247 INDSAGVIATNTAAIQLANAREKPSIALFSSE 278 (325)
Q Consensus 247 i~~a~l~I~~DTGp~HlAaAl~~P~iaLfg~t 278 (325)
...+..++|||.+.---+...|+|++.+=|-+
T Consensus 96 ~~~~~iVaTnD~eLk~rlr~~GIPvi~lr~r~ 127 (136)
T COG1412 96 KHGRYIVATNDKELKRRLRENGIPVITLRQRK 127 (136)
T ss_pred HcCCEEEEeCCHHHHHHHHHcCCCEEEEeCCe
Confidence 33367899999999999999999999986543
No 161
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=37.56 E-value=93 Score=25.49 Aligned_cols=68 Identities=12% Similarity=0.111 Sum_probs=44.8
Q ss_pred EEEecCCCchHHHHhHHc---cC--CCccccc----ChHHHHHHHH-----hCCEEEecCchHHHHH----HhcCCCEEE
Q 020516 212 LFVIPHEKEREGVEDVVG---DD--ASIVFIT----TPGQLAALIN-----DSAGVIATNTAAIQLA----NAREKPSIA 273 (325)
Q Consensus 212 vvl~g~~~e~~~~~~i~~---~~--~~~~~~~----~~~el~ali~-----~a~l~I~~DTGp~HlA----aAl~~P~ia 273 (325)
.|+.|+.+|.+..++... .+ +.-..+. ++.++..+++ ..++||+.-.+--||+ +-...|+|+
T Consensus 2 ~IimGS~SD~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpgvva~~t~~PVIg 81 (156)
T TIGR01162 2 GIIMGSDSDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLPGMVAALTPLPVIG 81 (156)
T ss_pred EEEECcHhhHHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhHHHHHhccCCCEEE
Confidence 467888889877666543 22 1111122 3356666665 4799999999999986 456788988
Q ss_pred EecCCC
Q 020516 274 LFSSEL 279 (325)
Q Consensus 274 Lfg~t~ 279 (325)
.--++.
T Consensus 82 vP~~~~ 87 (156)
T TIGR01162 82 VPVPSK 87 (156)
T ss_pred ecCCcc
Confidence 866543
No 162
>TIGR02174 CXXU_selWTH selT/selW/selH selenoprotein domain. This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam.
Probab=37.29 E-value=52 Score=22.92 Aligned_cols=38 Identities=16% Similarity=0.172 Sum_probs=26.4
Q ss_pred hhHhhhCCCCEEEEEeccCchhhhhhCCCCceEEEecCCC
Q 020516 2 YLHITRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDD 41 (325)
Q Consensus 2 ~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~Vd~v~~~~~~~ 41 (325)
++|.++||+..+.+...+.....|+-. ||..+.++++.
T Consensus 20 q~L~~~Fp~~~v~~~~~~~~~G~Fev~--~~g~~v~sk~~ 57 (72)
T TIGR02174 20 QELLEEFPDLEIEGENTPPTTGAFEVT--VNGQLVWSKLR 57 (72)
T ss_pred HHHHHHCCCCeeEEeeecCCCcEEEEE--ECCEEEEEecc
Confidence 578999999988887766666666642 34556666643
No 163
>PLN02949 transferase, transferring glycosyl groups
Probab=37.07 E-value=1.6e+02 Score=28.63 Aligned_cols=65 Identities=15% Similarity=0.110 Sum_probs=38.1
Q ss_pred CEEEecCC---CchHHHH---hHHccC--C-CcccccC--hHHHHHHHHhCCEEEec---CchHH--HHHHhcCCCEEEE
Q 020516 211 PLFVIPHE---KEREGVE---DVVGDD--A-SIVFITT--PGQLAALINDSAGVIAT---NTAAI--QLANAREKPSIAL 274 (325)
Q Consensus 211 ~vvl~g~~---~e~~~~~---~i~~~~--~-~~~~~~~--~~el~ali~~a~l~I~~---DTGp~--HlAaAl~~P~iaL 274 (325)
.++++|+. ++.+..+ ++.+.. . ++.+... -.++..++++|+++|-+ ++-++ ==|-|.|+|+|+-
T Consensus 305 ~LvIvG~~~~~~~~~~~~eL~~la~~l~L~~~V~f~g~v~~~el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~ 384 (463)
T PLN02949 305 KLQFVGSCRNKEDEERLQKLKDRAKELGLDGDVEFHKNVSYRDLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIAH 384 (463)
T ss_pred EEEEEeCCCCcccHHHHHHHHHHHHHcCCCCcEEEeCCCCHHHHHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEEe
Confidence 67888863 2333333 333322 2 2332322 26899999999999843 33222 2357899999996
Q ss_pred e
Q 020516 275 F 275 (325)
Q Consensus 275 f 275 (325)
-
T Consensus 385 ~ 385 (463)
T PLN02949 385 N 385 (463)
T ss_pred C
Confidence 3
No 164
>TIGR00550 nadA quinolinate synthetase complex, A subunit. This protein, termed NadA, plays a role in the synthesis of pyridine, a precursor to NAD. The quinolinate synthetase complex consists of A protein (this protein) and B protein. B protein converts L-aspartate to iminoaspartate, an unstable reaction product which in the absence of A protein is spontaneously hydrolyzed to form oxaloacetate. The A protein, NadA, converts iminoaspartate to quinolate.
Probab=36.69 E-value=1.3e+02 Score=27.75 Aligned_cols=69 Identities=9% Similarity=0.057 Sum_probs=37.9
Q ss_pred HHHHHhCCEEEecCchHHHHHHhcCCCEEEEecCCCCC-----ccccCCCCCCceeeee--CCCCC--CCCCCHHHHHHH
Q 020516 244 AALINDSAGVIATNTAAIQLANAREKPSIALFSSELKG-----RLFVPNAEEKKCTVIS--SRTGK--LIDTPVEAVLNA 314 (325)
Q Consensus 244 ~ali~~a~l~I~~DTGp~HlAaAl~~P~iaLfg~t~p~-----~~~pp~~~~~~~~~~~--~~~~~--m~~I~~~~V~~~ 314 (325)
..+.+.||. ||.-++....+....- .--|||+...- +..| . ...+.+. ....| |..+|++.|.++
T Consensus 206 ~eV~~~aD~-vgSTs~~i~~v~~~~~-~~~ii~TE~~l~~~l~~~~p-~---k~~i~~~~~~~C~~~~M~~~tl~~v~~~ 279 (310)
T TIGR00550 206 PEVVDLADF-IGSTSQIIRFVLKSPA-QKFIIGTEVGLVNRMEAESP-D---KNTIPLLNEAICPCCAMNRNTLEKLFEA 279 (310)
T ss_pred HHHHHhcCE-EecHHHHHHHHHhCCC-CeEEEEccHHHHHHHHHHCC-C---CeEEeCCCCCcCCCcchhcCCHHHHHHH
Confidence 456666664 4444566666666643 33455654211 1122 1 0122221 11245 999999999999
Q ss_pred HHHH
Q 020516 315 MQIF 318 (325)
Q Consensus 315 ~~~~ 318 (325)
+.+.
T Consensus 280 l~~~ 283 (310)
T TIGR00550 280 LEQE 283 (310)
T ss_pred HHhC
Confidence 9876
No 165
>TIGR00161 conserved hypothetical protein TIGR00161. This ortholog set includes MJ0106 from Methanococcus jannaschii and AF1251 from Archaeoglobus fulgidus, but not MJ1210 or AF0525.
Probab=36.55 E-value=1.9e+02 Score=25.36 Aligned_cols=79 Identities=13% Similarity=0.175 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHhh----cCC--CEEEecC-CCchHHHHhHHccCCCcccccChHHHHHHHHh------CCEEEecCchHH
Q 020516 195 PIQVWAEIANGLR----EFR--PLFVIPH-EKEREGVEDVVGDDASIVFITTPGQLAALIND------SAGVIATNTAAI 261 (325)
Q Consensus 195 p~e~~~~l~~~l~----~~~--~vvl~g~-~~e~~~~~~i~~~~~~~~~~~~~~el~ali~~------a~l~I~~DTGp~ 261 (325)
+..+|.++++.+. +.+ .++.+|| +.+. ..+.+.+..+..++..-++. --.++|.-+..+
T Consensus 88 ~p~~~~~~a~~il~~~~~~gv~~Ii~Lgg~~~~~--------~~~~v~~~at~~~~~~~l~~~~~~~~~g~i~G~~g~ll 159 (238)
T TIGR00161 88 PPAVVYDMTNAIVEWMVRNNSRELISFNGMVVRE--------KSQPVFGAANSQELIERLKDLIEIFPFGNLNGISGTLL 159 (238)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCeEEEEeCccCCC--------CCCcEEEEECCHHHHHHHHHhcCcCCCCEEechhHHHH
Confidence 4456666666654 334 6777777 3331 11333323333344443443 235666666667
Q ss_pred HHHHhcCCCEEEEecCCCCC
Q 020516 262 QLANAREKPSIALFSSELKG 281 (325)
Q Consensus 262 HlAaAl~~P~iaLfg~t~p~ 281 (325)
..|.-.|.|.++|+|.|.+.
T Consensus 160 ~~a~~~gi~~i~Ll~et~~~ 179 (238)
T TIGR00161 160 TRCAVNDIPAICLLAETLGP 179 (238)
T ss_pred HHHHHcCCCEEEEEEeCCCC
Confidence 78999999999999999664
No 166
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=35.87 E-value=1.5e+02 Score=27.82 Aligned_cols=68 Identities=21% Similarity=0.212 Sum_probs=46.2
Q ss_pred CCCCHHHHHHHHHHhhcCC-CEEEecC----CCchHHHHhHHccCCCcccccChHHHHHHHHhCCEEEecCchHHHHHHh
Q 020516 192 SLLPIQVWAEIANGLREFR-PLFVIPH----EKEREGVEDVVGDDASIVFITTPGQLAALINDSAGVIATNTAAIQLANA 266 (325)
Q Consensus 192 K~wp~e~~~~l~~~l~~~~-~vvl~g~----~~e~~~~~~i~~~~~~~~~~~~~~el~ali~~a~l~I~~DTGp~HlAaA 266 (325)
+..+.+.|.+.++...+.+ .++++.. .++.+..++... ++.. ...|.+|.+|-|.+.++.-
T Consensus 44 ~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~------------~l~e--~GvDaviv~Dpg~i~l~~e 109 (347)
T COG0826 44 LNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLD------------RLVE--LGVDAVIVADPGLIMLARE 109 (347)
T ss_pred ccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHH------------HHHH--cCCCEEEEcCHHHHHHHHH
Confidence 5699999999999999888 5665532 222222122111 1111 2579999999999999998
Q ss_pred cC--CCEEE
Q 020516 267 RE--KPSIA 273 (325)
Q Consensus 267 l~--~P~ia 273 (325)
.+ .|+.+
T Consensus 110 ~~p~l~ih~ 118 (347)
T COG0826 110 RGPDLPIHV 118 (347)
T ss_pred hCCCCcEEE
Confidence 87 77654
No 167
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=35.34 E-value=4.2e+02 Score=25.55 Aligned_cols=74 Identities=14% Similarity=0.064 Sum_probs=42.9
Q ss_pred HHHHHHhhcCC-CEEEecCCCchHHHHhHHccCCCcccccChHHHHHHH--HhCCEEEecCchHHHHHHhcCCCEEEEec
Q 020516 200 AEIANGLREFR-PLFVIPHEKEREGVEDVVGDDASIVFITTPGQLAALI--NDSAGVIATNTAAIQLANAREKPSIALFS 276 (325)
Q Consensus 200 ~~l~~~l~~~~-~vvl~g~~~e~~~~~~i~~~~~~~~~~~~~~el~ali--~~a~l~I~~DTGp~HlAaAl~~P~iaLfg 276 (325)
..+++.+.+-+ .++.+......+..+++ ..+.....+..++..++ ...|++||+--| -++|..+|+|.+-.--
T Consensus 324 ~~l~~~l~elGm~v~~~~~~~~~~~~~~~---~~~~~~~~D~~~l~~~i~~~~~dliig~s~~-k~~A~~l~ip~ir~g~ 399 (432)
T TIGR01285 324 AAWATFFTSMGAQIVAAVTTTGSPLLQKL---PVETVVIGDLEDLEDLACAAGADLLITNSHG-RALAQRLALPLVRAGF 399 (432)
T ss_pred HHHHHHHHHCCCEEEEEEeCCCCHHHHhC---CcCcEEeCCHHHHHHHHhhcCCCEEEECcch-HHHHHHcCCCEEEecC
Confidence 33444455556 44444333322222222 22222234557888888 557789987655 9999999999875544
Q ss_pred C
Q 020516 277 S 277 (325)
Q Consensus 277 ~ 277 (325)
|
T Consensus 400 P 400 (432)
T TIGR01285 400 P 400 (432)
T ss_pred C
Confidence 4
No 168
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=34.13 E-value=3.4e+02 Score=26.85 Aligned_cols=39 Identities=13% Similarity=0.071 Sum_probs=29.3
Q ss_pred ChHHHHHHHHh--CCEEEecCchHHHHHHhcCCCEEEEecCC
Q 020516 239 TPGQLAALIND--SAGVIATNTAAIQLANAREKPSIALFSSE 278 (325)
Q Consensus 239 ~~~el~ali~~--a~l~I~~DTGp~HlAaAl~~P~iaLfg~t 278 (325)
+..++...|+. .|++||+ +=-.|+|.-+|+|.+.+=.|.
T Consensus 350 D~~el~~~i~~~~PdliiG~-~~er~~a~~lgiP~~~i~~Pv 390 (519)
T PRK02910 350 DYLEVEDAIAEAAPELVLGT-QMERHSAKRLGIPCAVISAPT 390 (519)
T ss_pred CHHHHHHHHHhcCCCEEEEc-chHHHHHHHcCCCEEEecccc
Confidence 44577776665 7888855 467899999999998875554
No 169
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=33.85 E-value=74 Score=25.39 Aligned_cols=78 Identities=17% Similarity=0.179 Sum_probs=44.0
Q ss_pred HHHHHHHHhhcCC-CEEEecCCCchHHHHhHHccCCCc---ccccChHH-HHHHHH-hCC---EEEecCchHHHHH---H
Q 020516 198 VWAEIANGLREFR-PLFVIPHEKEREGVEDVVGDDASI---VFITTPGQ-LAALIN-DSA---GVIATNTAAIQLA---N 265 (325)
Q Consensus 198 ~~~~l~~~l~~~~-~vvl~g~~~e~~~~~~i~~~~~~~---~~~~~~~e-l~ali~-~a~---l~I~~DTGp~HlA---a 265 (325)
-..=++.+|.+++ .+++.|.|+-.+.++ +. .|.. ....+..+ +..+.+ ..| .||-||+|..-.| .
T Consensus 15 ~alYl~~~Lk~~G~~v~Va~npAA~kLl~-va--DPe~~Y~~~~~diD~~l~~i~e~~~d~~~~FvHNDagvsY~~T~~~ 91 (139)
T PF09001_consen 15 SALYLSYKLKKKGFEVVVAGNPAALKLLE-VA--DPEKHYLKEVVDIDKCLAEIEEGDFDLIFGFVHNDAGVSYAATYKA 91 (139)
T ss_dssp HHHHHHHHHHCTTEEEEEEE-HHHHHHHH-HH--STT-SS-SEEEEHHHHHHH--TTS-SEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCeEEEecCHHHHhHhh-hc--CCccchhcceeeHHHHHHHhhhCCCCEEEEEEecchhHHHHHHHHH
Confidence 4455788899988 999999998766654 22 2321 11122223 333331 333 5888999987765 5
Q ss_pred hcCCCEEEE-ecCC
Q 020516 266 AREKPSIAL-FSSE 278 (325)
Q Consensus 266 Al~~P~iaL-fg~t 278 (325)
..+++++++ ||-.
T Consensus 92 i~~~~~~aiVFg~~ 105 (139)
T PF09001_consen 92 ISNAKTIAIVFGKD 105 (139)
T ss_dssp HH-SEEEEEEE-S-
T ss_pred HcCCCeEEEEecCC
Confidence 677887764 7765
No 170
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=33.35 E-value=1.8e+02 Score=26.11 Aligned_cols=82 Identities=11% Similarity=0.114 Sum_probs=55.4
Q ss_pred HHHHHHHHHhhcCC-CEEEec---------CCCchHHHHhHHccC--CCccc-ccC-----hH------HHHHHHHhCCE
Q 020516 197 QVWAEIANGLREFR-PLFVIP---------HEKEREGVEDVVGDD--ASIVF-ITT-----PG------QLAALINDSAG 252 (325)
Q Consensus 197 e~~~~l~~~l~~~~-~vvl~g---------~~~e~~~~~~i~~~~--~~~~~-~~~-----~~------el~ali~~a~l 252 (325)
+++.+.++.|.+.+ .+++-. +..+++.++++.+.+ |++.. .+. .. +...+=++-..
T Consensus 14 ~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~a~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~ga~rlL~~ld~~~~~~~pK~ 93 (282)
T cd07025 14 ERLERAIARLESLGLEVVVGPHVLARDGYLAGTDEERAADLNAAFADPEIKAIWCARGGYGANRLLPYLDYDLIRANPKI 93 (282)
T ss_pred HHHHHHHHHHHhCCCEEEeccchhhhcCccCCCHHHHHHHHHHHhhCCCCCEEEEcCCcCCHHHhhhhCCHHHHhhCCeE
Confidence 88888899998877 444332 245677788887654 33221 111 11 12333378888
Q ss_pred EEe-cCchHHHHHHhcCCCEEEEecCC
Q 020516 253 VIA-TNTAAIQLANAREKPSIALFSSE 278 (325)
Q Consensus 253 ~I~-~DTGp~HlAaAl~~P~iaLfg~t 278 (325)
||| .|.-.+|+|-...+-.++++||.
T Consensus 94 ~iGySDiTaL~~~l~~~~g~~t~hGp~ 120 (282)
T cd07025 94 FVGYSDITALHLALYAKTGLVTFHGPM 120 (282)
T ss_pred EEEecHHHHHHHHHHHhcCceEEECcc
Confidence 898 68899999998888899999985
No 171
>PRK10125 putative glycosyl transferase; Provisional
Probab=33.34 E-value=1.3e+02 Score=28.67 Aligned_cols=43 Identities=19% Similarity=0.233 Sum_probs=31.2
Q ss_pred ChHHHHHHHHhCCEEEec---CchHHHH--HHhcCCCEEEEecCCCCC
Q 020516 239 TPGQLAALINDSAGVIAT---NTAAIQL--ANAREKPSIALFSSELKG 281 (325)
Q Consensus 239 ~~~el~ali~~a~l~I~~---DTGp~Hl--AaAl~~P~iaLfg~t~p~ 281 (325)
+..+++.+++.||+||-+ |+-|+=+ |-|.|+|+|+-=....|+
T Consensus 296 ~~~~l~~~y~~aDvfV~pS~~Egfp~vilEAmA~G~PVVat~~gG~~E 343 (405)
T PRK10125 296 DKRKLMSALNQMDALVFSSRVDNYPLILCEALSIGVPVIATHSDAARE 343 (405)
T ss_pred CHHHHHHHHHhCCEEEECCccccCcCHHHHHHHcCCCEEEeCCCChHH
Confidence 346899999999999974 4444433 688999999975544444
No 172
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=33.25 E-value=2.7e+02 Score=22.85 Aligned_cols=79 Identities=9% Similarity=0.085 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHHhhcCC-CEEEecCCCch--HHHHhHHccCCCccccc--C----h---HHHHHHHH--hCCEEEecCch
Q 020516 194 LPIQVWAEIANGLREFR-PLFVIPHEKER--EGVEDVVGDDASIVFIT--T----P---GQLAALIN--DSAGVIATNTA 259 (325)
Q Consensus 194 wp~e~~~~l~~~l~~~~-~vvl~g~~~e~--~~~~~i~~~~~~~~~~~--~----~---~el~ali~--~a~l~I~~DTG 259 (325)
=+.+-+..|++...+.+ +++|+|+..+. +..+.+.+.+|++.++. . . .++...|+ ++|+++..=..
T Consensus 32 ~g~dl~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vglG~ 111 (172)
T PF03808_consen 32 TGSDLFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVFVGLGA 111 (172)
T ss_pred CHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCC
Confidence 46678889999888876 89999887652 34556667788764221 1 1 34444444 45665555554
Q ss_pred H------HHHHHhcCCCEE
Q 020516 260 A------IQLANAREKPSI 272 (325)
Q Consensus 260 p------~HlAaAl~~P~i 272 (325)
| .+....++.+++
T Consensus 112 PkQE~~~~~~~~~l~~~v~ 130 (172)
T PF03808_consen 112 PKQERWIARHRQRLPAGVI 130 (172)
T ss_pred CHHHHHHHHHHHHCCCCEE
Confidence 4 556666666633
No 173
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=33.10 E-value=50 Score=26.86 Aligned_cols=64 Identities=14% Similarity=0.227 Sum_probs=39.9
Q ss_pred EEEecCCCchHHHHhHHc---cCC---Cccccc---ChHHHHHHHHh-----CCEEEecCchHHHHH----HhcCCCEEE
Q 020516 212 LFVIPHEKEREGVEDVVG---DDA---SIVFIT---TPGQLAALIND-----SAGVIATNTAAIQLA----NAREKPSIA 273 (325)
Q Consensus 212 vvl~g~~~e~~~~~~i~~---~~~---~~~~~~---~~~el~ali~~-----a~l~I~~DTGp~HlA----aAl~~P~ia 273 (325)
.|+.|+.+|.+.+++... .+. .+.... ++.++..+++. +++||+.-.+--||+ +-...|+|+
T Consensus 4 ~Ii~gs~SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~Lpgvva~~t~~PVIg 83 (150)
T PF00731_consen 4 AIIMGSTSDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMSAALPGVVASLTTLPVIG 83 (150)
T ss_dssp EEEESSGGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS--HHHHHHHHSSS-EEE
T ss_pred EEEeCCHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCcccchhhheeccCCCEEE
Confidence 467788889887776654 221 111111 34567777654 689999998888875 567899999
Q ss_pred Ee
Q 020516 274 LF 275 (325)
Q Consensus 274 Lf 275 (325)
+=
T Consensus 84 vP 85 (150)
T PF00731_consen 84 VP 85 (150)
T ss_dssp EE
T ss_pred ee
Confidence 93
No 174
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=32.96 E-value=2.5e+02 Score=27.34 Aligned_cols=78 Identities=14% Similarity=0.171 Sum_probs=45.8
Q ss_pred HHHHHHHHHhhcCC---CEEEecCC-Cc---hHHHHhHHcc---CCCcccccChHHHHHHHH---hCCEEEecCchHHHH
Q 020516 197 QVWAEIANGLREFR---PLFVIPHE-KE---REGVEDVVGD---DASIVFITTPGQLAALIN---DSAGVIATNTAAIQL 263 (325)
Q Consensus 197 e~~~~l~~~l~~~~---~vvl~g~~-~e---~~~~~~i~~~---~~~~~~~~~~~el~ali~---~a~l~I~~DTGp~Hl 263 (325)
++...+.+.+.+-+ .++++++. .+ .+..+++... .+.+....+..++...+. ..|++||+--| .++
T Consensus 319 ~~~~~l~~fl~Elg~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~d~~el~~~l~~~~~~dllig~s~~-~~~ 397 (457)
T TIGR02932 319 DLVIGLAEFCLEVELEPVLLLLGDDNSKYKKDPRIEELKNKANFDIEVVWNADLWELEKRIKAKLDIDLIMGHSKG-RYV 397 (457)
T ss_pred HHHHHHHHHHHHCCCeEEEEEECCCCccccchHHHHHHHhhcCCCceEEeCCCHHHHHHHHhhcCCCCEEEECCch-HHH
Confidence 35666666666544 33444442 11 2233344321 112221234467776554 59999999877 999
Q ss_pred HHhcCCCEEEEe
Q 020516 264 ANAREKPSIALF 275 (325)
Q Consensus 264 AaAl~~P~iaLf 275 (325)
|..+|+|.+-+-
T Consensus 398 A~klgip~~~~g 409 (457)
T TIGR02932 398 AIDANIPMVRVG 409 (457)
T ss_pred HHHcCCCEEEec
Confidence 999999998763
No 175
>PF13638 PIN_4: PIN domain; PDB: 2HWW_C 2HWX_A 2DOK_B 2HWY_B 2WP8_J.
Probab=32.51 E-value=41 Score=26.12 Aligned_cols=33 Identities=12% Similarity=0.198 Sum_probs=20.6
Q ss_pred HHHHHHHhCC-----EEEecCchHHHHHHhcCCCEEEE
Q 020516 242 QLAALINDSA-----GVIATNTAAIQLANAREKPSIAL 274 (325)
Q Consensus 242 el~ali~~a~-----l~I~~DTGp~HlAaAl~~P~iaL 274 (325)
+.+..++.-. ++||+|.+..=-|.+.|+|++.+
T Consensus 95 ~~a~~~~~~~~~~~vvLvT~D~~l~~~A~~~gi~~~~~ 132 (133)
T PF13638_consen 95 NCALYLQEENPGRKVVLVTNDKNLRLKARAEGIPAVSY 132 (133)
T ss_dssp HHHHHHHHHCGCEEEEEEE--HHHHHHHHHTT--EE--
T ss_pred HHHHHHHHhcCCCeEEEEeCCHHHHHHHhhcccccccC
Confidence 3344444444 79999999999999999999753
No 176
>PLN02534 UDP-glycosyltransferase
Probab=31.63 E-value=2.8e+02 Score=27.27 Aligned_cols=96 Identities=14% Similarity=0.035 Sum_probs=57.0
Q ss_pred CCCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCC-CEEEecC-CC---c-hHHH--HhHHcc--CCCccc
Q 020516 167 QGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFVIPH-EK---E-REGV--EDVVGD--DASIVF 236 (325)
Q Consensus 167 ~~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~-~vvl~g~-~~---e-~~~~--~~i~~~--~~~~~~ 236 (325)
++..|.++.|+-. .++.++..|++..|...+ +|+..-. +. + .+.. +.+... ..++.
T Consensus 282 ~~sVvyvsfGS~~-------------~~~~~q~~e~a~gl~~~~~~flW~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~- 347 (491)
T PLN02534 282 PRSVIYACLGSLC-------------RLVPSQLIELGLGLEASKKPFIWVIKTGEKHSELEEWLVKENFEERIKGRGLL- 347 (491)
T ss_pred CCceEEEEecccc-------------cCCHHHHHHHHHHHHhCCCCEEEEEecCccccchhhhcCchhhHHhhccCCee-
Confidence 3567777766643 288999999999998776 6665543 21 1 1111 111111 11222
Q ss_pred ccChHHHHHHHHhCCE--EEecCch-HHHHHHhcCCCEEEEec
Q 020516 237 ITTPGQLAALINDSAG--VIATNTA-AIQLANAREKPSIALFS 276 (325)
Q Consensus 237 ~~~~~el~ali~~a~l--~I~~DTG-p~HlAaAl~~P~iaLfg 276 (325)
+..-.--.++++.+++ ||++... -+.=|...|+|+|++=-
T Consensus 348 v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~ 390 (491)
T PLN02534 348 IKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPL 390 (491)
T ss_pred ccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccc
Confidence 1111122568888887 9998764 45567899999998643
No 177
>cd07984 LPLAT_LABLAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LABLAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as lipid A biosynthesis lauroyl/myristoyl (LABLAT, HtrB) acyltransferases and similar proteins.
Probab=31.50 E-value=1.8e+02 Score=23.86 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=20.4
Q ss_pred CchHHHHHHhcCCCEEEEecCCCC
Q 020516 257 NTAAIQLANAREKPSIALFSSELK 280 (325)
Q Consensus 257 DTGp~HlAaAl~~P~iaLfg~t~p 280 (325)
-+|+.+||...|+|+|-+|...++
T Consensus 119 ~~G~~~lA~~~~~pivp~~~~~~~ 142 (192)
T cd07984 119 PTGPARLALKTGAPVVPAFAYRLP 142 (192)
T ss_pred hHHHHHHHHHHCCcEEEEEEEEcC
Confidence 479999999999999999886543
No 178
>PF05367 Phage_endo_I: Phage endonuclease I; InterPro: IPR008029 Endonuclease I (3.1.21.2 from EC) is a junction-resolving enzyme encoded by bacteriophage T7, that selectively binds and cleaves four-way Holliday DNA junctions []. The structure of the enzyme shows that it forms a symmetric homodimer arranged in two well-separated domains. Each domain, however, is composed of elements from both subunits, and amino acid side chains from both protomers contribute to the active site []. ; GO: 0008833 deoxyribonuclease IV (phage-T4-induced) activity, 0015074 DNA integration, 0016032 viral reproduction; PDB: 3CAE_A 1M0D_A 1M0I_C 1FZR_B 2PFJ_B.
Probab=31.26 E-value=39 Score=27.06 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=11.3
Q ss_pred hhHhhhCCCCEEEEEeccCch
Q 020516 2 YLHITRYPGVLIDVIASARGK 22 (325)
Q Consensus 2 ~~Lk~~~P~a~I~~l~~~~~~ 22 (325)
.++|++||+..|-+|-.....
T Consensus 79 l~Ik~q~P~LDIR~VFq~~~~ 99 (149)
T PF05367_consen 79 LLIKEQYPELDIRFVFQSSRT 99 (149)
T ss_dssp HHHHHH-TTSEEEEEES-TTS
T ss_pred HHHHHhCCCccEEEEEecCCC
Confidence 456666666666666554443
No 179
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=31.11 E-value=4.4e+02 Score=24.60 Aligned_cols=67 Identities=15% Similarity=0.051 Sum_probs=42.3
Q ss_pred eeecCHHHHHHHHHHHHHcCCCCCCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCC--CEEEecCCCchH
Q 020516 145 RVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR--PLFVIPHEKERE 222 (325)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~--~vvl~g~~~e~~ 222 (325)
-+.+.+++.+.++.+.+.. ..-.+|+|-.-.++. ++..+.++++.+.+ ..|+.|.-...+
T Consensus 102 avG~~~~d~er~~~L~~~~--~g~D~iviD~AhGhs----------------~~~i~~ik~ik~~~P~~~vIaGNV~T~e 163 (346)
T PRK05096 102 STGTSDADFEKTKQILALS--PALNFICIDVANGYS----------------EHFVQFVAKAREAWPDKTICAGNVVTGE 163 (346)
T ss_pred EecCCHHHHHHHHHHHhcC--CCCCEEEEECCCCcH----------------HHHHHHHHHHHHhCCCCcEEEecccCHH
Confidence 4455677777777665431 123577776433321 48888889998876 455556566677
Q ss_pred HHHhHHc
Q 020516 223 GVEDVVG 229 (325)
Q Consensus 223 ~~~~i~~ 229 (325)
.++++..
T Consensus 164 ~a~~Li~ 170 (346)
T PRK05096 164 MVEELIL 170 (346)
T ss_pred HHHHHHH
Confidence 7777765
No 180
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=30.72 E-value=4.6e+02 Score=24.69 Aligned_cols=36 Identities=17% Similarity=0.168 Sum_probs=28.0
Q ss_pred HHHHHHHHh--CCEEEecCchHHHHHHhcCCCEEEEecC
Q 020516 241 GQLAALIND--SAGVIATNTAAIQLANAREKPSIALFSS 277 (325)
Q Consensus 241 ~el~ali~~--a~l~I~~DTGp~HlAaAl~~P~iaLfg~ 277 (325)
.++...++. .|++||+..+ .|+|..+|+|.+...+.
T Consensus 345 ~~~~~~~~~~~pdl~ig~~~~-~~~a~~~gip~~~~~~~ 382 (406)
T cd01967 345 LELEELVEKLKPDLILSGIKE-KYVAQKLGIPFLDLHSE 382 (406)
T ss_pred HHHHHHHHhcCCCEEEeCCcc-hHHHHhcCCCEEecCCC
Confidence 455555544 8999999875 79999999999877654
No 181
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats. Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.
Probab=30.61 E-value=65 Score=29.68 Aligned_cols=31 Identities=26% Similarity=0.334 Sum_probs=16.5
Q ss_pred eecCHHHHHHHHHHHHHcCCCCCCeEEEecC
Q 020516 146 VSISRRLKEVVAEKYKNAGAEQGKYIVIHGI 176 (325)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~g 176 (325)
+..+++-...+..+..+.....++||++|--
T Consensus 173 l~~~~~i~~~a~~~i~~~~~~~~~yiavHlR 203 (351)
T PF10250_consen 173 LRFSPEIRELADKFIKRLLAGGGPYIAVHLR 203 (351)
T ss_dssp --B-HHHHHHHHHHHHHH----SSEEEEEE-
T ss_pred EecCHHHHHHHHHHHHHhhcccCceEEEeec
Confidence 3445555666666666664246889999953
No 182
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=30.36 E-value=3.5e+02 Score=26.30 Aligned_cols=80 Identities=10% Similarity=0.056 Sum_probs=48.7
Q ss_pred HHHHHHHHhhcCC-CEE--EecCCC----chHHHHhHHccC---CCcccccChHHHHHHHHh----CCEEEecCchHHHH
Q 020516 198 VWAEIANGLREFR-PLF--VIPHEK----EREGVEDVVGDD---ASIVFITTPGQLAALIND----SAGVIATNTAAIQL 263 (325)
Q Consensus 198 ~~~~l~~~l~~~~-~vv--l~g~~~----e~~~~~~i~~~~---~~~~~~~~~~el~ali~~----a~l~I~~DTGp~Hl 263 (325)
+...+.+.+.+-+ .++ ++++.. +.+..+++.... ..+....+..++...++. .|++||+--| -|+
T Consensus 316 ~~~~l~~fl~elGm~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~~~d~~e~~~~i~~~~~~~dliig~s~~-~~~ 394 (454)
T cd01973 316 LVIGLAEFCLEVEMKPVLLLLGDDNSKYKKDPRIKALKEKADYDMEIVTNADLWELEKRIKNKGLELDLILGHSKG-RYI 394 (454)
T ss_pred HHHHHHHHHHHCCCeEEEEEECCCCcccchhHHHHHHHhhcCCCceEEECCCHHHHHHHHHhcCCCCCEEEECCcc-HHH
Confidence 5566666666555 332 344421 123344443322 122222455788888864 7999998766 999
Q ss_pred HHhcCCCEEEEecCC
Q 020516 264 ANAREKPSIALFSSE 278 (325)
Q Consensus 264 AaAl~~P~iaLfg~t 278 (325)
|..+|+|.+-+--|.
T Consensus 395 A~~~gip~~~~g~Pv 409 (454)
T cd01973 395 AIDNNIPMVRVGFPT 409 (454)
T ss_pred HHHcCCCEEEecCCe
Confidence 999999998874443
No 183
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=30.32 E-value=2e+02 Score=27.44 Aligned_cols=34 Identities=12% Similarity=-0.076 Sum_probs=25.0
Q ss_pred HHHHHHHHhCCEEEecCc-----hHHHHHHhcCCCEEEE
Q 020516 241 GQLAALINDSAGVIATNT-----AAIQLANAREKPSIAL 274 (325)
Q Consensus 241 ~el~ali~~a~l~I~~DT-----Gp~HlAaAl~~P~iaL 274 (325)
.++..+++.||++|-+-. -.+==|-|.|+|+|+-
T Consensus 316 ~~l~~~l~~adv~v~~s~~E~Fgi~~lEAMa~G~pvIa~ 354 (419)
T cd03806 316 EELLEELSTASIGLHTMWNEHFGIGVVEYMAAGLIPLAH 354 (419)
T ss_pred HHHHHHHHhCeEEEECCccCCcccHHHHHHHcCCcEEEE
Confidence 789999999999885421 1223467899999974
No 184
>PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 11 GT11 from CAZY comprises enzymes with only one known activity; galactoside 2-L-fucosyltransferase (2.4.1.69 from EC). Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 2-L-fucosyltransferase 1 (2.4.1.69 from EC) and Galactoside 2-L-fucosyltransferase 2 (2.4.1.69 from EC) belong to the Hh blood group system and are associated with H/h and Se/se antigens.; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=30.16 E-value=2.4e+02 Score=25.52 Aligned_cols=79 Identities=15% Similarity=0.160 Sum_probs=52.4
Q ss_pred CCHHHHHHHHHHhhcCC---CEEEecCCCchHHHHhHHccCCC-cccc--cChHHHHHHHHhCCEEEecCchHHHHHHhc
Q 020516 194 LPIQVWAEIANGLREFR---PLFVIPHEKEREGVEDVVGDDAS-IVFI--TTPGQLAALINDSAGVIATNTAAIQLANAR 267 (325)
Q Consensus 194 wp~e~~~~l~~~l~~~~---~vvl~g~~~e~~~~~~i~~~~~~-~~~~--~~~~el~ali~~a~l~I~~DTGp~HlAaAl 267 (325)
=+.++|.+-++.+.++. .++++ .+|.+++++......+ ..+. .++.+=..++++|+-+|..-|--..-|+-+
T Consensus 188 ~~~~Yy~~Ai~~i~~~~~~~~f~if--SDD~~w~k~~l~~~~~~~~~~~~~~~~~Dl~lms~C~~~IisnSTFswW~a~L 265 (298)
T PF01531_consen 188 CDKDYYKKAIEYIREKVKNPKFFIF--SDDIEWCKENLKFSNGDVYFSGNNSPYEDLYLMSQCKHFIISNSTFSWWAAYL 265 (298)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEE--cCCHHHHHHHHhhcCCcEEEECCCCHHHHHHHHHhCCcEEECCChHHHHHHHH
Confidence 36789999999998765 34444 3577788765543322 1111 234343457899999888889999999888
Q ss_pred CC-CEEEE
Q 020516 268 EK-PSIAL 274 (325)
Q Consensus 268 ~~-P~iaL 274 (325)
+. +.|.+
T Consensus 266 ~~~~~i~i 273 (298)
T PF01531_consen 266 SKNDKIVI 273 (298)
T ss_pred CCCCCEEE
Confidence 54 44444
No 185
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=30.12 E-value=4.4e+02 Score=25.09 Aligned_cols=38 Identities=13% Similarity=0.039 Sum_probs=28.5
Q ss_pred HHHHHHHHhC----CEEEecC-----chHHHHHHhcCCCEEEEecCC
Q 020516 241 GQLAALINDS----AGVIATN-----TAAIQLANAREKPSIALFSSE 278 (325)
Q Consensus 241 ~el~ali~~a----~l~I~~D-----TGp~HlAaAl~~P~iaLfg~t 278 (325)
.++..+++.| |+||.+. +..+-=|-|.|+|+|+-=...
T Consensus 328 ~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg 374 (439)
T TIGR02472 328 DDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDGG 374 (439)
T ss_pred HHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCCC
Confidence 5788888876 8998754 346666899999999875443
No 186
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=30.09 E-value=1.7e+02 Score=27.38 Aligned_cols=79 Identities=18% Similarity=0.102 Sum_probs=45.7
Q ss_pred HHHHHHHHhhcCC-CEEEecCCCchHHHHhHHcc---CCC-cc---cc-----cCh---------------HHHHHHHH-
Q 020516 198 VWAEIANGLREFR-PLFVIPHEKEREGVEDVVGD---DAS-IV---FI-----TTP---------------GQLAALIN- 248 (325)
Q Consensus 198 ~~~~l~~~l~~~~-~vvl~g~~~e~~~~~~i~~~---~~~-~~---~~-----~~~---------------~el~ali~- 248 (325)
-+..|++.|.+++ .|.+..++.-.+.++..--. .+. .. .. .+. .++..+++
T Consensus 11 P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 90 (392)
T TIGR01426 11 PTLGVVEELVARGHRVTYATTEEFAERVEAAGAEFVLYGSALPPPDNPPENTEEEPIDIIEKLLDEAEDVLPQLEEAYKG 90 (392)
T ss_pred ccHHHHHHHHhCCCeEEEEeCHHHHHHHHHcCCEEEecCCcCccccccccccCcchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4788889998888 67777666544444432110 010 00 00 000 11222332
Q ss_pred -hCCEEEecCc--hHHHHHHhcCCCEEEEec
Q 020516 249 -DSAGVIATNT--AAIQLANAREKPSIALFS 276 (325)
Q Consensus 249 -~a~l~I~~DT--Gp~HlAaAl~~P~iaLfg 276 (325)
+.|++|+.-. +..++|..+|+|+|.++.
T Consensus 91 ~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~ 121 (392)
T TIGR01426 91 DRPDLIVYDIASWTGRLLARKWDVPVISSFP 121 (392)
T ss_pred CCCCEEEECCccHHHHHHHHHhCCCEEEEeh
Confidence 5899988754 566888999999998853
No 187
>TIGR00035 asp_race aspartate racemase.
Probab=29.28 E-value=3e+02 Score=23.77 Aligned_cols=46 Identities=9% Similarity=0.071 Sum_probs=27.2
Q ss_pred eEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcC----C-CEEEecCCCchHHHHhHH
Q 020516 170 YIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREF----R-PLFVIPHEKEREGVEDVV 228 (325)
Q Consensus 170 ~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~----~-~vvl~g~~~e~~~~~~i~ 228 (325)
.|+|..|.++.. ..+.|..+.+.-..+ + +.+++..++--+..+.+.
T Consensus 3 ~iGiiGGmgp~a-------------t~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~ 53 (229)
T TIGR00035 3 MIGILGGMGPLA-------------TAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYIL 53 (229)
T ss_pred eEEEecCcCHHH-------------HHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHh
Confidence 577777777643 456777776655432 2 677777775333333333
No 188
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=28.90 E-value=86 Score=23.05 Aligned_cols=14 Identities=29% Similarity=0.335 Sum_probs=9.0
Q ss_pred HHHHHHHhCCEEEe
Q 020516 242 QLAALINDSAGVIA 255 (325)
Q Consensus 242 el~ali~~a~l~I~ 255 (325)
.+...+++||++|.
T Consensus 41 ~l~~~i~~aD~VIv 54 (97)
T PF10087_consen 41 RLPSKIKKADLVIV 54 (97)
T ss_pred HHHHhcCCCCEEEE
Confidence 36667777777654
No 189
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=28.81 E-value=77 Score=29.66 Aligned_cols=41 Identities=24% Similarity=0.228 Sum_probs=33.7
Q ss_pred HHHHHHHHhCCEEEecCc-------------hHHHHHHhcCCCEEEEecCCCCC
Q 020516 241 GQLAALINDSAGVIATNT-------------AAIQLANAREKPSIALFSSELKG 281 (325)
Q Consensus 241 ~el~ali~~a~l~I~~DT-------------Gp~HlAaAl~~P~iaLfg~t~p~ 281 (325)
-.+...++.|||+|+... |..-+|-..++|+|+|=|.....
T Consensus 276 ~~le~~v~daDLVITGEGr~D~Qs~~GK~pigVA~~Akk~~vPvIaiaGs~~~~ 329 (378)
T COG1929 276 TNLEDAVKDADLVITGEGRIDSQSLHGKTPIGVAKLAKKYGVPVIAIAGSLGED 329 (378)
T ss_pred hCHHHhhccCCEEEeCCCcccccccCCccchHHHHhhhhhCCCEEEEecccccC
Confidence 467889999999999763 66667778999999999986554
No 190
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=28.61 E-value=1.1e+02 Score=25.80 Aligned_cols=71 Identities=11% Similarity=0.003 Sum_probs=32.3
Q ss_pred hhHhhhCCCCEEEEEeccCch-h-hhhhC-CCCceEEEecCCCCCCCchhHHHHHHHHHhcCCcEEEEecCCchHHHHHH
Q 020516 2 YLHITRYPGVLIDVIASARGK-Q-TFELN-KNVRWANVYDLDDDWPEPAEYTDILGVMKNRYYDMVLSTKLAGLGHAAFL 78 (325)
Q Consensus 2 ~~Lk~~~P~a~I~~l~~~~~~-~-l~~~~-p~Vd~v~~~~~~~~~~~~~~~~~l~~~Lr~~~yDl~i~~~~~~~~~~~~~ 78 (325)
+.|++++|+.+|-+=+...+. . +-+.. +.|. +..++... ....-+-|+..++|++|.+... ..-+++.
T Consensus 42 ~~l~~~~p~~~illT~~T~tg~~~~~~~~~~~v~-~~~~P~D~-------~~~~~rfl~~~~P~~~i~~EtE-lWPnll~ 112 (186)
T PF04413_consen 42 KRLRKQRPDLRILLTTTTPTGREMARKLLPDRVD-VQYLPLDF-------PWAVRRFLDHWRPDLLIWVETE-LWPNLLR 112 (186)
T ss_dssp HHHTT---TS-EEEEES-CCHHHHHHGG-GGG-S-EEE---SS-------HHHHHHHHHHH--SEEEEES-----HHHHH
T ss_pred HHHHHhCCCCeEEEEecCCchHHHHHHhCCCCeE-EEEeCccC-------HHHHHHHHHHhCCCEEEEEccc-cCHHHHH
Confidence 578999999999888764442 3 33332 3444 33244221 1223345667889999999877 7777776
Q ss_pred HHh
Q 020516 79 FMT 81 (325)
Q Consensus 79 ~~~ 81 (325)
.+.
T Consensus 113 ~a~ 115 (186)
T PF04413_consen 113 EAK 115 (186)
T ss_dssp H--
T ss_pred HHh
Confidence 543
No 191
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=28.56 E-value=16 Score=34.16 Aligned_cols=36 Identities=17% Similarity=0.189 Sum_probs=28.4
Q ss_pred HHHHHHHHhCCEEEecCchHHHHHHhc-------CCCEEEEecCCC
Q 020516 241 GQLAALINDSAGVIATNTAAIQLANAR-------EKPSIALFSSEL 279 (325)
Q Consensus 241 ~el~ali~~a~l~I~~DTGp~HlAaAl-------~~P~iaLfg~t~ 279 (325)
+.++.=+.+||++|+| |+|+|.|+ +.|+|.-.|...
T Consensus 254 ~rm~~~Vp~AdvVItN---PTH~AVAlkY~~~~~~AP~VvAKG~d~ 296 (363)
T COG1377 254 RRMMSDVPKADVVITN---PTHYAVALKYDPEKMPAPVVVAKGVDL 296 (363)
T ss_pred HHHHhhCCCCCEEeeC---cCceeeeeeeccccCCCCEEEEeCCcH
Confidence 3457788899999998 88999996 467777777664
No 192
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=28.56 E-value=53 Score=29.15 Aligned_cols=34 Identities=21% Similarity=0.235 Sum_probs=27.6
Q ss_pred HHHHH--hCCEEEecCchHH-------HHHHhcCCCEEEEecC
Q 020516 244 AALIN--DSAGVIATNTAAI-------QLANAREKPSIALFSS 277 (325)
Q Consensus 244 ~ali~--~a~l~I~~DTGp~-------HlAaAl~~P~iaLfg~ 277 (325)
.+++. ++|++|+=|||-. --|.++|+|+|.+=-|
T Consensus 189 ~all~q~~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~Rp 231 (257)
T COG2099 189 KALLEQYRIDVVVTKNSGGAGGTYEKIEAARELGIPVIMIERP 231 (257)
T ss_pred HHHHHHhCCCEEEEccCCcccCcHHHHHHHHHcCCcEEEEecC
Confidence 34444 5788999999977 6788999999999887
No 193
>PLN02555 limonoid glucosyltransferase
Probab=28.42 E-value=2.8e+02 Score=27.24 Aligned_cols=93 Identities=12% Similarity=0.058 Sum_probs=54.2
Q ss_pred CCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCC-CEEEecCCC--c--h--HHH-HhHHccCC-Cccccc
Q 020516 168 GKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFVIPHEK--E--R--EGV-EDVVGDDA-SIVFIT 238 (325)
Q Consensus 168 ~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~-~vvl~g~~~--e--~--~~~-~~i~~~~~-~~~~~~ 238 (325)
+..|.+..|+-. .++.+++.+++..|...+ +|++.-.+. + . +.. +.+....+ +.....
T Consensus 277 ~sVvyvsfGS~~-------------~~~~~q~~ela~~l~~~~~~flW~~~~~~~~~~~~~~~lp~~~~~~~~~~g~v~~ 343 (480)
T PLN02555 277 SSVVYISFGTVV-------------YLKQEQIDEIAYGVLNSGVSFLWVMRPPHKDSGVEPHVLPEEFLEKAGDKGKIVQ 343 (480)
T ss_pred CceeEEEecccc-------------CCCHHHHHHHHHHHHhcCCeEEEEEecCcccccchhhcCChhhhhhcCCceEEEe
Confidence 346777766532 278899999999998776 666542221 0 0 000 11221111 111111
Q ss_pred ChHHHHHHH--HhCCEEEecCc-hHHHHHHhcCCCEEEE
Q 020516 239 TPGQLAALI--NDSAGVIATNT-AAIQLANAREKPSIAL 274 (325)
Q Consensus 239 ~~~el~ali--~~a~l~I~~DT-Gp~HlAaAl~~P~iaL 274 (325)
-..| ..++ .++.+||++.. +-+.=|...|+|+|++
T Consensus 344 W~PQ-~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~ 381 (480)
T PLN02555 344 WCPQ-EKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCF 381 (480)
T ss_pred cCCH-HHHhCCCccCeEEecCCcchHHHHHHcCCCEEeC
Confidence 1122 4467 56888999886 4566789999999985
No 194
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=27.95 E-value=55 Score=25.86 Aligned_cols=53 Identities=13% Similarity=-0.024 Sum_probs=25.3
Q ss_pred CCEEEEEeccCchhhhhhCCCCceEEEec---CCCCCCCchhHHHHHHHHHhcCCcEE
Q 020516 10 GVLIDVIASARGKQTFELNKNVRWANVYD---LDDDWPEPAEYTDILGVMKNRYYDMV 64 (325)
Q Consensus 10 ~a~I~~l~~~~~~~l~~~~p~Vd~v~~~~---~~~~~~~~~~~~~l~~~Lr~~~yDl~ 64 (325)
+.++++++.....+.... .+....... .............+.+.+++.++|++
T Consensus 29 G~~v~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~DiV 84 (177)
T PF13439_consen 29 GHEVTVVSPGVKDPIEEE--LVKIFVKIPYPIRKRFLRSFFFMRRLRRLIKKEKPDIV 84 (177)
T ss_dssp T-EEEEEESS-TTS-SST--EEEE---TT-SSTSS--HHHHHHHHHHHHHHHHT-SEE
T ss_pred CCEEEEEEcCCCccchhh--ccceeeeeecccccccchhHHHHHHHHHHHHHcCCCeE
Confidence 779999988776665544 111111100 01110122333456677889999998
No 195
>PRK13658 hypothetical protein; Provisional
Probab=27.76 E-value=73 Score=20.91 Aligned_cols=20 Identities=10% Similarity=0.157 Sum_probs=17.3
Q ss_pred CCCCCHHHHHHHHHHHHHhh
Q 020516 303 LIDTPVEAVLNAMQIFNESL 322 (325)
Q Consensus 303 m~~I~~~~V~~~~~~~~~~~ 322 (325)
|.+|+++.|.+.+..+.-+|
T Consensus 1 Ms~idaq~~A~RIDTVLDIL 20 (59)
T PRK13658 1 MSEFDAQRVAERIDTVLDIL 20 (59)
T ss_pred CCcccHHHHHHHHhHHHHHH
Confidence 78999999999999887665
No 196
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=27.55 E-value=1e+02 Score=26.87 Aligned_cols=78 Identities=17% Similarity=0.184 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHhhcCCCEEEecCCCchHHHHhHHccCCCccc-ccChHHHHHHH----HhCCEEEecCchHHHHHHhcC
Q 020516 194 LPIQVWAEIANGLREFRPLFVIPHEKEREGVEDVVGDDASIVF-ITTPGQLAALI----NDSAGVIATNTAAIQLANARE 268 (325)
Q Consensus 194 wp~e~~~~l~~~l~~~~~vvl~g~~~e~~~~~~i~~~~~~~~~-~~~~~el~ali----~~a~l~I~~DTGp~HlAaAl~ 268 (325)
.|.|-|.+++.+....+ +-|+ |++++++..= ..+ ++.. ....++...-+ -..+|||-.|.-.++.|+..|
T Consensus 71 a~teEml~ia~~~kP~~-vtLV--Pe~r~evTTe-gGl-D~~~~~~~l~~~v~~L~~~GirVSLFiD~d~~qi~aa~~~g 145 (243)
T COG0854 71 APTEEMLAIALKTKPHQ-VTLV--PEKREEVTTE-GGL-DVAGQLDKLRDAVRRLKNAGIRVSLFIDPDPEQIEAAAEVG 145 (243)
T ss_pred CchHHHHHHHHhcCCCe-EEeC--CCchhhcccc-cch-hhhhhhhhHHHHHHHHHhCCCeEEEEeCCCHHHHHHHHHhC
Confidence 57778877777666555 3333 7766654321 100 1100 01112333333 346899999999999999999
Q ss_pred CCEEEEec
Q 020516 269 KPSIALFS 276 (325)
Q Consensus 269 ~P~iaLfg 276 (325)
.|.|-||-
T Consensus 146 A~~IELhT 153 (243)
T COG0854 146 APRIELHT 153 (243)
T ss_pred CCEEEEec
Confidence 99999984
No 197
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=27.12 E-value=2.9e+02 Score=26.86 Aligned_cols=135 Identities=10% Similarity=-0.010 Sum_probs=72.8
Q ss_pred CCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCC-CEEEe-cCCCc---------hHH---HHhHHccCC-
Q 020516 168 GKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFVI-PHEKE---------REG---VEDVVGDDA- 232 (325)
Q Consensus 168 ~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~-~vvl~-g~~~e---------~~~---~~~i~~~~~- 232 (325)
+..|.++.|+-. ..|.++..+++..|...+ +|+.. ..+.. .+. .+.+.+..+
T Consensus 261 ~sVvyvsfGS~~-------------~l~~~q~~ela~gL~~s~~~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~~~~ 327 (455)
T PLN02152 261 SSVIYVSFGTMV-------------ELSKKQIEELARALIEGKRPFLWVITDKLNREAKIEGEEETEIEKIAGFRHELEE 327 (455)
T ss_pred CceEEEEecccc-------------cCCHHHHHHHHHHHHHcCCCeEEEEecCcccccccccccccccccchhHHHhccC
Confidence 467778776643 289999999999998776 66654 32210 000 112221121
Q ss_pred CcccccChHHHHHHHHhCC--EEEecCc-hHHHHHHhcCCCEEEEecCCCCCc---cccCCCCCCceeeeeCCCCCCCCC
Q 020516 233 SIVFITTPGQLAALINDSA--GVIATNT-AAIQLANAREKPSIALFSSELKGR---LFVPNAEEKKCTVISSRTGKLIDT 306 (325)
Q Consensus 233 ~~~~~~~~~el~ali~~a~--l~I~~DT-Gp~HlAaAl~~P~iaLfg~t~p~~---~~pp~~~~~~~~~~~~~~~~m~~I 306 (325)
+..+..-.. -.+++++.+ +||++.. +-++=|...|+|+|++=--.+... ..- . ..+..+.+.. ..-..+
T Consensus 328 ~g~v~~W~P-Q~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~-~-~~~~G~~~~~--~~~~~~ 402 (455)
T PLN02152 328 VGMIVSWCS-QIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQPANAKLLE-E-IWKTGVRVRE--NSEGLV 402 (455)
T ss_pred CeEEEeeCC-HHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccchHHHHHHH-H-HhCceEEeec--CcCCcC
Confidence 111111112 345888877 6999885 467778999999998522221110 000 0 0001111111 111246
Q ss_pred CHHHHHHHHHHHHH
Q 020516 307 PVEAVLNAMQIFNE 320 (325)
Q Consensus 307 ~~~~V~~~~~~~~~ 320 (325)
+.|+|.+++++++.
T Consensus 403 ~~e~l~~av~~vm~ 416 (455)
T PLN02152 403 ERGEIRRCLEAVME 416 (455)
T ss_pred cHHHHHHHHHHHHh
Confidence 89999999999863
No 198
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=26.06 E-value=1.5e+02 Score=26.41 Aligned_cols=31 Identities=23% Similarity=0.270 Sum_probs=20.6
Q ss_pred HHHHHHHhCCEEEec-CchHHH-------HHHhcCCCEE
Q 020516 242 QLAALINDSAGVIAT-NTAAIQ-------LANAREKPSI 272 (325)
Q Consensus 242 el~ali~~a~l~I~~-DTGp~H-------lAaAl~~P~i 272 (325)
++..+++++|++|++ -=||+| +|.|+|+|.+
T Consensus 53 ~l~~a~~r~D~vI~tGGLGPT~DDiT~e~vAka~g~~lv 91 (255)
T COG1058 53 ALREASERADVVITTGGLGPTHDDLTAEAVAKALGRPLV 91 (255)
T ss_pred HHHHHHhCCCEEEECCCcCCCccHhHHHHHHHHhCCCcc
Confidence 455566667776554 336666 7888888876
No 199
>PLN02554 UDP-glycosyltransferase family protein
Probab=26.03 E-value=2.7e+02 Score=27.27 Aligned_cols=138 Identities=12% Similarity=-0.027 Sum_probs=71.0
Q ss_pred CCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCC-CEEEecCCCch--------------HH-HHhHHccC
Q 020516 168 GKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFVIPHEKER--------------EG-VEDVVGDD 231 (325)
Q Consensus 168 ~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~-~vvl~g~~~e~--------------~~-~~~i~~~~ 231 (325)
+..|.++.|+-. ..+.+++.+++..|...+ ++++.....+. +. -+.+....
T Consensus 274 ~svvyvsfGS~~-------------~~~~~~~~~la~~l~~~~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~ 340 (481)
T PLN02554 274 KSVVFLCFGSMG-------------GFSEEQAREIAIALERSGHRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRT 340 (481)
T ss_pred CcEEEEeccccc-------------cCCHHHHHHHHHHHHHcCCCeEEEEcCCcccccccccccccchhhhCChHHHHHh
Confidence 456777766642 278899999999998776 66655322110 00 01111101
Q ss_pred -CCcccccChHHHHHHH--HhCCEEEecCc-hHHHHHHhcCCCEEEEecCCCCCccccCCCCC-CceeeeeCC-C-----
Q 020516 232 -ASIVFITTPGQLAALI--NDSAGVIATNT-AAIQLANAREKPSIALFSSELKGRLFVPNAEE-KKCTVISSR-T----- 300 (325)
Q Consensus 232 -~~~~~~~~~~el~ali--~~a~l~I~~DT-Gp~HlAaAl~~P~iaLfg~t~p~~~~pp~~~~-~~~~~~~~~-~----- 300 (325)
.+.....- ---..++ ..+.+||++.. +-+.=|...|||+|++=--.+.....--.... +--+.+... .
T Consensus 341 ~~~g~v~~W-~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~ 419 (481)
T PLN02554 341 KDIGKVIGW-APQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLA 419 (481)
T ss_pred ccCceEEee-CCHHHHhCCcccCcccccCccchHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeeccccccccc
Confidence 01110100 1124577 66777999874 56778999999999852222211100000000 001111100 0
Q ss_pred CCCCCCCHHHHHHHHHHHH
Q 020516 301 GKLIDTPVEAVLNAMQIFN 319 (325)
Q Consensus 301 ~~m~~I~~~~V~~~~~~~~ 319 (325)
+....++.++|.+++++++
T Consensus 420 ~~~~~~~~e~l~~av~~vm 438 (481)
T PLN02554 420 GEMETVTAEEIERGIRCLM 438 (481)
T ss_pred cccCeEcHHHHHHHHHHHh
Confidence 1123679999999998876
No 200
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=25.59 E-value=3.1e+02 Score=21.10 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=31.2
Q ss_pred hHHHHHHHHhCCEEEecCch---HHHHHHhcCCCEEEEecCCCC
Q 020516 240 PGQLAALINDSAGVIATNTA---AIQLANAREKPSIALFSSELK 280 (325)
Q Consensus 240 ~~el~ali~~a~l~I~~DTG---p~HlAaAl~~P~iaLfg~t~p 280 (325)
..++.+.++.+|++|+.... .--|..+-+.+.|+.+|..--
T Consensus 29 ~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d 72 (133)
T PF00389_consen 29 EEELAERLKDADAIIVGSGTPLTAEVLEAAPNLKLISTAGAGVD 72 (133)
T ss_dssp HHHHHHHHTTESEEEESTTSTBSHHHHHHHTT-SEEEESSSSCT
T ss_pred HHHHHHHhCCCeEEEEcCCCCcCHHHHhccceeEEEEEcccccC
Confidence 36788889999998887766 555777788889998887653
No 201
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=24.57 E-value=2.4e+02 Score=27.35 Aligned_cols=83 Identities=12% Similarity=0.142 Sum_probs=56.9
Q ss_pred CCHHHHHHHHHHhhcCCCEEEecCCCc-hHHHHhHHccCCCccccc--ChHHHHHHHHhCCEEEecCch-----HHHHHH
Q 020516 194 LPIQVWAEIANGLREFRPLFVIPHEKE-REGVEDVVGDDASIVFIT--TPGQLAALINDSAGVIATNTA-----AIQLAN 265 (325)
Q Consensus 194 wp~e~~~~l~~~l~~~~~vvl~g~~~e-~~~~~~i~~~~~~~~~~~--~~~el~ali~~a~l~I~~DTG-----p~HlAa 265 (325)
|-++.+.+|++.+.+-. +=+ |...| .+.+.++ .++++.+... +...+..++..||+++....| .+-=|-
T Consensus 292 ~~I~~i~~Lv~~lPd~~-f~I-ga~te~s~kL~~L-~~y~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~ 368 (438)
T TIGR02919 292 DQIEHLEEIVQALPDYH-FHI-AALTEMSSKLMSL-DKYDNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAF 368 (438)
T ss_pred HHHHHHHHHHHhCCCcE-EEE-EecCcccHHHHHH-HhcCCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHH
Confidence 77888888888886655 223 55555 4556566 5556654222 224789999999999987765 455678
Q ss_pred hcCCCEEEEecCCC
Q 020516 266 AREKPSIALFSSEL 279 (325)
Q Consensus 266 Al~~P~iaLfg~t~ 279 (325)
..|+|+++.=-.-.
T Consensus 369 ~~G~pI~afd~t~~ 382 (438)
T TIGR02919 369 EYNLLILGFEETAH 382 (438)
T ss_pred HcCCcEEEEecccC
Confidence 89999998764433
No 202
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=24.46 E-value=3.2e+02 Score=26.47 Aligned_cols=123 Identities=14% Similarity=0.104 Sum_probs=61.5
Q ss_pred CCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCC-CEEEecCCCchHHHHhHHccCCCcccccChHHHHHH
Q 020516 168 GKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFVIPHEKEREGVEDVVGDDASIVFITTPGQLAAL 246 (325)
Q Consensus 168 ~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~-~vvl~g~~~e~~~~~~i~~~~~~~~~~~~~~el~al 246 (325)
++.|.+.-|+.. +..|.+...++++.+.+.. +|+.-....+.+... .|+....=..| .++
T Consensus 276 ~~vv~vsfGs~~------------~~~~~~~~~~~~~~~~~~~~~~iW~~~~~~~~~l~------~n~~~~~W~PQ-~~l 336 (500)
T PF00201_consen 276 KGVVYVSFGSIV------------SSMPEEKLKEIAEAFENLPQRFIWKYEGEPPENLP------KNVLIVKWLPQ-NDL 336 (500)
T ss_dssp TEEEEEE-TSSS------------TT-HHHHHHHHHHHHHCSTTEEEEEETCSHGCHHH------TTEEEESS--H-HHH
T ss_pred CCEEEEecCccc------------chhHHHHHHHHHHHHhhCCCccccccccccccccc------ceEEEeccccc-hhh
Confidence 456667666543 1256666777777777655 444433332111111 11111111134 367
Q ss_pred HH--hCCEEEecCc-hHHHHHHhcCCCEEEEecCCCCCccccCCCCCC--ceeeeeCCC-C---CCCCCCHHHHHHHHHH
Q 020516 247 IN--DSAGVIATNT-AAIQLANAREKPSIALFSSELKGRLFVPNAEEK--KCTVISSRT-G---KLIDTPVEAVLNAMQI 317 (325)
Q Consensus 247 i~--~a~l~I~~DT-Gp~HlAaAl~~P~iaLfg~t~p~~~~pp~~~~~--~~~~~~~~~-~---~m~~I~~~~V~~~~~~ 317 (325)
++ +.++|||+.. +-++=|...|||+|++ | ..+++ ++..+.... + ...+++.+++.+++++
T Consensus 337 L~hp~v~~fitHgG~~s~~Ea~~~gvP~l~~----------P-~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ 405 (500)
T PF00201_consen 337 LAHPRVKLFITHGGLNSTQEALYHGVPMLGI----------P-LFGDQPRNAARVEEKGVGVVLDKNDLTEEELRAAIRE 405 (500)
T ss_dssp HTSTTEEEEEES--HHHHHHHHHCT--EEE-----------G-CSTTHHHHHHHHHHTTSEEEEGGGC-SHHHHHHHHHH
T ss_pred hhcccceeeeeccccchhhhhhhccCCccCC----------C-CcccCCccceEEEEEeeEEEEEecCCcHHHHHHHHHH
Confidence 75 4578998865 5678889999999994 3 21221 111111110 0 2458899999999999
Q ss_pred HHH
Q 020516 318 FNE 320 (325)
Q Consensus 318 ~~~ 320 (325)
++.
T Consensus 406 vl~ 408 (500)
T PF00201_consen 406 VLE 408 (500)
T ss_dssp HHH
T ss_pred HHh
Confidence 864
No 203
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=24.41 E-value=1.8e+02 Score=22.33 Aligned_cols=84 Identities=13% Similarity=-0.004 Sum_probs=34.3
Q ss_pred hHhhhCCCCEEEEEeccCchhhh-hhCCCCceEEEecCCCC---CCCchhHHHHHHHH--HhcCCcEEEEecCCchHHHH
Q 020516 3 LHITRYPGVLIDVIASARGKQTF-ELNKNVRWANVYDLDDD---WPEPAEYTDILGVM--KNRYYDMVLSTKLAGLGHAA 76 (325)
Q Consensus 3 ~Lk~~~P~a~I~~l~~~~~~~l~-~~~p~Vd~v~~~~~~~~---~~~~~~~~~l~~~L--r~~~yDl~i~~~~~~~~~~~ 76 (325)
+|.++ +.++++++........ .....+ .++.++.... +..+..+..+.+.+ ++++||++............
T Consensus 13 ~L~~~--G~~V~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Dvv~~~~~~~~~~~~ 89 (160)
T PF13579_consen 13 ALAAR--GHEVTVVTPQPDPEDDEEEEDGV-RVHRLPLPRRPWPLRLLRFLRRLRRLLAARRERPDVVHAHSPTAGLVAA 89 (160)
T ss_dssp HHHHT--T-EEEEEEE---GGG-SEEETTE-EEEEE--S-SSSGGGHCCHHHHHHHHCHHCT---SEEEEEHHHHHHHHH
T ss_pred HHHHC--CCEEEEEecCCCCcccccccCCc-eEEeccCCccchhhhhHHHHHHHHHHHhhhccCCeEEEecccchhHHHH
Confidence 44454 6799999966655432 223344 3555443222 11122334445555 88999999977532112222
Q ss_pred HHH-HhCCCceeec
Q 020516 77 FLF-MTTARDRVSY 89 (325)
Q Consensus 77 ~~~-~~~a~~rig~ 89 (325)
++. ..++|..+.+
T Consensus 90 ~~~~~~~~p~v~~~ 103 (160)
T PF13579_consen 90 LARRRRGIPLVVTV 103 (160)
T ss_dssp HHHHHHT--EEEE-
T ss_pred HHHHccCCcEEEEE
Confidence 333 4456554433
No 204
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=24.16 E-value=1.6e+02 Score=24.26 Aligned_cols=85 Identities=9% Similarity=0.046 Sum_probs=51.7
Q ss_pred CCCHHHHHHHHHHhhcCCCEEEecCCCchHHHHhHHccCC----CcccccChHHHHHHHHhCCEEEecCc--------hH
Q 020516 193 LLPIQVWAEIANGLREFRPLFVIPHEKEREGVEDVVGDDA----SIVFITTPGQLAALINDSAGVIATNT--------AA 260 (325)
Q Consensus 193 ~wp~e~~~~l~~~l~~~~~vvl~g~~~e~~~~~~i~~~~~----~~~~~~~~~el~ali~~a~l~I~~DT--------Gp 260 (325)
.-..+.+.++++.|.+...|+++|...-.-.++.+...+. +...... .....+..-|++|...- -.
T Consensus 17 ~l~~~~l~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~--~~~~~~~~~D~vI~iS~sG~t~~~i~~ 94 (179)
T cd05005 17 KIDEEELDKLISAILNAKRIFVYGAGRSGLVAKAFAMRLMHLGLNVYVVGE--TTTPAIGPGDLLIAISGSGETSSVVNA 94 (179)
T ss_pred hcCHHHHHHHHHHHHhCCeEEEEecChhHHHHHHHHHHHHhCCCeEEEeCC--CCCCCCCCCCEEEEEcCCCCcHHHHHH
Confidence 3677899999999987777777775443333333332221 1111111 12334555667665442 26
Q ss_pred HHHHHhcCCCEEEEecCCC
Q 020516 261 IQLANAREKPSIALFSSEL 279 (325)
Q Consensus 261 ~HlAaAl~~P~iaLfg~t~ 279 (325)
++.|...|+|+|+|=+...
T Consensus 95 ~~~ak~~g~~iI~IT~~~~ 113 (179)
T cd05005 95 AEKAKKAGAKVVLITSNPD 113 (179)
T ss_pred HHHHHHCCCeEEEEECCCC
Confidence 8889999999999998654
No 205
>PLN00164 glucosyltransferase; Provisional
Probab=23.89 E-value=6.9e+02 Score=24.42 Aligned_cols=93 Identities=13% Similarity=0.099 Sum_probs=54.6
Q ss_pred CCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCC-CEE-EecCCCc--------hHHH----HhHHccC--
Q 020516 168 GKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLF-VIPHEKE--------REGV----EDVVGDD-- 231 (325)
Q Consensus 168 ~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~-~vv-l~g~~~e--------~~~~----~~i~~~~-- 231 (325)
+..|.++.|+-. ..+.++..+++..|...+ +++ ++.++.. .+.- +.+....
T Consensus 272 ~svvyvsfGS~~-------------~~~~~q~~ela~gL~~s~~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~ 338 (480)
T PLN00164 272 ASVVFLCFGSMG-------------FFDAPQVREIAAGLERSGHRFLWVLRGPPAAGSRHPTDADLDELLPEGFLERTKG 338 (480)
T ss_pred CceEEEEecccc-------------cCCHHHHHHHHHHHHHcCCCEEEEEcCCcccccccccccchhhhCChHHHHHhcC
Confidence 456777766532 278889999999998776 665 4443211 0000 0011100
Q ss_pred CCcccccChHHHHHHHHhCC--EEEecCc-hHHHHHHhcCCCEEEE
Q 020516 232 ASIVFITTPGQLAALINDSA--GVIATNT-AAIQLANAREKPSIAL 274 (325)
Q Consensus 232 ~~~~~~~~~~el~ali~~a~--l~I~~DT-Gp~HlAaAl~~P~iaL 274 (325)
.++. +..----.+++++++ +||++.. +.+.=|...|||+|++
T Consensus 339 ~g~~-v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~ 383 (480)
T PLN00164 339 RGLV-WPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPW 383 (480)
T ss_pred CCeE-EeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeC
Confidence 0111 101012356888877 7999874 6677799999999985
No 206
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=23.81 E-value=1.4e+02 Score=28.03 Aligned_cols=84 Identities=10% Similarity=0.067 Sum_probs=52.3
Q ss_pred CCCCHHHHHHHHHHhhcC---CCEEEecCCCchHHHHhHHccCCCccccc--ChHHHHHHHHh---CCEEEecCchH---
Q 020516 192 SLLPIQVWAEIANGLREF---RPLFVIPHEKEREGVEDVVGDDASIVFIT--TPGQLAALIND---SAGVIATNTAA--- 260 (325)
Q Consensus 192 K~wp~e~~~~l~~~l~~~---~~vvl~g~~~e~~~~~~i~~~~~~~~~~~--~~~el~ali~~---a~l~I~~DTGp--- 260 (325)
++|-.|++.++++.|.+. +.+||+=|+.|.+-...+--.- +...++ ...+++..|-. .+++|+.|-=|
T Consensus 3 ~~~~~~~~~~~~~~l~~~~~~~~~ilveg~~d~~~l~~lgi~g-~~i~~s~~p~~~cad~ii~~gi~rVVi~~D~d~~G~ 81 (360)
T PRK14719 3 KQESLEKLLLIIDDLKLLAEKGIPILVEGPNDILSLKNLKINA-NFITVSNTPVFQIADDLIAENISEVILLTDFDRAGR 81 (360)
T ss_pred HHHHHHHHHHHHHHHHHhhhCCCEEEEEcchHHHHHHHcCCCC-cEEEEeCCchHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 346789999999999843 4788888998887766553221 211122 12445544433 67999986333
Q ss_pred ------HHHHHhcCCCEEEEec
Q 020516 261 ------IQLANAREKPSIALFS 276 (325)
Q Consensus 261 ------~HlAaAl~~P~iaLfg 276 (325)
..+=...|+.+.+++-
T Consensus 82 ~~~~~~~~~L~~aGi~V~~~l~ 103 (360)
T PRK14719 82 VYAKNIMEEFQSRGIKVNNLIR 103 (360)
T ss_pred ccchHHHHHHHHCCCEEEeehH
Confidence 3444667887765544
No 207
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=23.43 E-value=4.3e+02 Score=23.29 Aligned_cols=82 Identities=18% Similarity=0.095 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHcCCCCCCCCCCCCCCCeeecCHHHHHHHHHHHHHcCCCCCCeEEEecCCCCcccccccCCCCCCCCCH
Q 020516 117 RGYNMYEQMVDWLGRPFRSVPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPI 196 (325)
Q Consensus 117 ~~~~~~~~ll~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~gas~~~~~~~~r~~~~K~wp~ 196 (325)
...++|.+..+.||++.-++ ..=.+.+|.+++...-......|+...+=+... .. ......++
T Consensus 71 ~~~~~Yl~~~k~lGf~~IEi-----S~G~~~i~~~~~~rlI~~~~~~g~~v~~EvG~K----~~--------~~~~~~~~ 133 (237)
T TIGR03849 71 GKFDEYLNECDELGFEAVEI-----SDGSMEISLEERCNLIERAKDNGFMVLSEVGKK----SP--------EKDSELTP 133 (237)
T ss_pred hhHHHHHHHHHHcCCCEEEE-----cCCccCCCHHHHHHHHHHHHhCCCeEecccccc----CC--------cccccCCH
Confidence 46788999999999843222 223356777877655445555554322212211 11 11234788
Q ss_pred HHHHHHHHHhhcCC-CEEEe
Q 020516 197 QVWAEIANGLREFR-PLFVI 215 (325)
Q Consensus 197 e~~~~l~~~l~~~~-~vvl~ 215 (325)
+.|.+.+++..+.+ ..|++
T Consensus 134 ~~~i~~~~~~LeAGA~~Vii 153 (237)
T TIGR03849 134 DDRIKLINKDLEAGADYVII 153 (237)
T ss_pred HHHHHHHHHHHHCCCcEEEE
Confidence 99999999888888 55555
No 208
>PLN03004 UDP-glycosyltransferase
Probab=23.38 E-value=4e+02 Score=25.89 Aligned_cols=135 Identities=14% Similarity=0.083 Sum_probs=72.7
Q ss_pred CCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCC-CEEEecC-CCc--hH--HHH-----hHHccC--CCc
Q 020516 168 GKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFVIPH-EKE--RE--GVE-----DVVGDD--ASI 234 (325)
Q Consensus 168 ~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~-~vvl~g~-~~e--~~--~~~-----~i~~~~--~~~ 234 (325)
+.+|.++.|+.. ..|.++..+|+..|...+ +|+..-. +.+ .+ ..+ .+.+.. .++
T Consensus 270 ~sVvyvsfGS~~-------------~~~~~q~~ela~gL~~s~~~FlW~~r~~~~~~~~~~~~~~~lp~gf~er~~~~g~ 336 (451)
T PLN03004 270 KSVVFLCFGSLG-------------LFSKEQVIEIAVGLEKSGQRFLWVVRNPPELEKTELDLKSLLPEGFLSRTEDKGM 336 (451)
T ss_pred CceEEEEecccc-------------cCCHHHHHHHHHHHHHCCCCEEEEEcCCccccccccchhhhCChHHHHhccCCcE
Confidence 457777766642 279999999999999877 6665543 211 00 011 111111 122
Q ss_pred ccccChHHHHHHHHhCCE--EEecCc-hHHHHHHhcCCCEEEEecCCCCCc---cccCCCCCCceeeeeCCCCCCCCCCH
Q 020516 235 VFITTPGQLAALINDSAG--VIATNT-AAIQLANAREKPSIALFSSELKGR---LFVPNAEEKKCTVISSRTGKLIDTPV 308 (325)
Q Consensus 235 ~~~~~~~el~ali~~a~l--~I~~DT-Gp~HlAaAl~~P~iaLfg~t~p~~---~~pp~~~~~~~~~~~~~~~~m~~I~~ 308 (325)
. +..=---..+++++++ ||++.. +-+.=|.+.|||+|++=--.+... ..- . .-+-.+.+...+ -..++.
T Consensus 337 ~-v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~-~-~~g~g~~l~~~~--~~~~~~ 411 (451)
T PLN03004 337 V-VKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIV-D-EIKIAISMNESE--TGFVSS 411 (451)
T ss_pred E-EEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchhhHHHHH-H-HhCceEEecCCc--CCccCH
Confidence 2 1110122458999998 999775 455668999999998622111110 000 0 000011111110 115799
Q ss_pred HHHHHHHHHHHH
Q 020516 309 EAVLNAMQIFNE 320 (325)
Q Consensus 309 ~~V~~~~~~~~~ 320 (325)
|+|.+++++++.
T Consensus 412 e~l~~av~~vm~ 423 (451)
T PLN03004 412 TEVEKRVQEIIG 423 (451)
T ss_pred HHHHHHHHHHhc
Confidence 999999998863
No 209
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=23.37 E-value=1.8e+02 Score=23.94 Aligned_cols=62 Identities=10% Similarity=0.041 Sum_probs=34.9
Q ss_pred HHHHHHHhhc--CC-CEEEecCCCc-hH-HHHhHHccCCCccccc-ChHHHHHHHHhCCEEEecCchH
Q 020516 199 WAEIANGLRE--FR-PLFVIPHEKE-RE-GVEDVVGDDASIVFIT-TPGQLAALINDSAGVIATNTAA 260 (325)
Q Consensus 199 ~~~l~~~l~~--~~-~vvl~g~~~e-~~-~~~~i~~~~~~~~~~~-~~~el~ali~~a~l~I~~DTGp 260 (325)
-.++++.+.. .+ .++++|..+- .. .+..+.+.-.++...+ +..++...++.||++|+.=+.|
T Consensus 31 ~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~~~l~~aDiVIsat~~~ 98 (168)
T cd01080 31 ILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLKEHTKQADIVIVAVGKP 98 (168)
T ss_pred HHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHHHHHhhCCEEEEcCCCC
Confidence 3445555532 12 6777776542 23 4444444322332121 2368899999999999876665
No 210
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=23.33 E-value=5.5e+02 Score=23.12 Aligned_cols=99 Identities=15% Similarity=0.124 Sum_probs=58.1
Q ss_pred CeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCC-CEEEecCCC--chHHHHhHHccCCCccccc-ChHHHH
Q 020516 169 KYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFVIPHEK--EREGVEDVVGDDASIVFIT-TPGQLA 244 (325)
Q Consensus 169 ~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~-~vvl~g~~~--e~~~~~~i~~~~~~~~~~~-~~~el~ 244 (325)
..++|-||-+..+ |-.+..+++++.+.++. ++|+=+..- -.+..+.+...+++.+ ++ +.-|+.
T Consensus 103 havVIGPGLGRdp------------~~~k~i~~iley~~~~dvP~VIDaDGL~Lv~q~~e~l~~~~~~vi-LTPNvvEFk 169 (306)
T KOG3974|consen 103 HAVVIGPGLGRDP------------AILKEIAKILEYLRGKDVPLVIDADGLWLVEQLPERLIGGYPKVI-LTPNVVEFK 169 (306)
T ss_pred eEEEECCCCCCCH------------HHHHHHHHHHHHHhcCCCcEEEcCCceEehhhchhhhhccCceee-eCCcHHHHH
Confidence 3678888887643 67778888998888888 655432210 0112222344455433 22 224555
Q ss_pred HHHHhCCEEEecCchHHHHHHhcCCCEEEEecCCCC
Q 020516 245 ALINDSAGVIATNTAAIQLANAREKPSIALFSSELK 280 (325)
Q Consensus 245 ali~~a~l~I~~DTGp~HlAaAl~~P~iaLfg~t~p 280 (325)
-|-...-.=.-+-+-..|||++++-=+|..=|+.+.
T Consensus 170 RLcd~~l~~~d~~~~~~~L~~~l~nv~vvqKG~~D~ 205 (306)
T KOG3974|consen 170 RLCDAELDKVDSHSQMQHLAAELMNVTVVQKGESDK 205 (306)
T ss_pred HHHHHhhccccchHHHHHHHHHhcCeEEEEecCCce
Confidence 443332212223356689999998888888888775
No 211
>cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=23.15 E-value=85 Score=26.78 Aligned_cols=35 Identities=14% Similarity=0.023 Sum_probs=26.3
Q ss_pred HHHHHhCCEEEecCchHHHHHHhcCCCEEEEecCCC
Q 020516 244 AALINDSAGVIATNTAAIQLANAREKPSIALFSSEL 279 (325)
Q Consensus 244 ~ali~~a~l~I~~DTGp~HlAaAl~~P~iaLfg~t~ 279 (325)
..+..+++.+||.|.|..|+..+ |+.--.+-|.-+
T Consensus 16 ~~~~~~~~~~i~aDgGa~~l~~~-gi~Pd~iiGDfD 50 (208)
T cd07995 16 LKLWKKADLIIAADGGANHLLDL-GIVPDLIIGDFD 50 (208)
T ss_pred HHhhccCCEEEEEChHHHHHHHc-CCCCCEEEecCc
Confidence 45677889999999999999888 544444556544
No 212
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=22.69 E-value=1.6e+02 Score=22.91 Aligned_cols=59 Identities=14% Similarity=0.134 Sum_probs=31.8
Q ss_pred HHHHHHhhcCC-CEEEecCC----CchHHHHhHHccC--C----------------Cccc---ccChHHHHHHHHhCCEE
Q 020516 200 AEIANGLREFR-PLFVIPHE----KEREGVEDVVGDD--A----------------SIVF---ITTPGQLAALINDSAGV 253 (325)
Q Consensus 200 ~~l~~~l~~~~-~vvl~g~~----~e~~~~~~i~~~~--~----------------~~~~---~~~~~el~ali~~a~l~ 253 (325)
.++++.|.+.. +++++|.. ...+.+.++.+.. | ...+ .........++++||++
T Consensus 2 ~~~~~~L~~A~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDlv 81 (137)
T PF00205_consen 2 DEAADLLSSAKRPVILAGRGARRSGAAEELRELAEKLGIPVATTPMGKGVIPEDHPLFLGYLGLFGSPAANEALEQADLV 81 (137)
T ss_dssp HHHHHHHHH-SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGGGTTSSTTTSTTEEEESCGGSCHHHHHHHHHSSEE
T ss_pred HHHHHHHHhCCCEEEEEcCCcChhhHHHHHHHHHHHHCCCEEecCccccccCCCCchhcccCCccCCHHHHHHhcCCCEE
Confidence 35677777666 67777643 3345555554321 1 1111 01124667889999998
Q ss_pred EecCc
Q 020516 254 IATNT 258 (325)
Q Consensus 254 I~~DT 258 (325)
|...+
T Consensus 82 l~iG~ 86 (137)
T PF00205_consen 82 LAIGT 86 (137)
T ss_dssp EEESS
T ss_pred EEECC
Confidence 87554
No 213
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=22.41 E-value=6.4e+02 Score=24.42 Aligned_cols=134 Identities=13% Similarity=-0.017 Sum_probs=69.7
Q ss_pred CCCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCC-CEEEecCCC---chHH----HHhHHccCC-Ccccc
Q 020516 167 QGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFVIPHEK---EREG----VEDVVGDDA-SIVFI 237 (325)
Q Consensus 167 ~~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~-~vvl~g~~~---e~~~----~~~i~~~~~-~~~~~ 237 (325)
++..|.++.|+-. ..+.++..+++..|...+ +|+..-.+. +.+. -+.+.+..+ +....
T Consensus 263 ~~sVvyvsfGS~~-------------~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~~~~~lp~~f~er~~~~g~v~ 329 (451)
T PLN02410 263 KNSVIFVSLGSLA-------------LMEINEVMETASGLDSSNQQFLWVIRPGSVRGSEWIESLPKEFSKIISGRGYIV 329 (451)
T ss_pred CCcEEEEEccccc-------------cCCHHHHHHHHHHHHhcCCCeEEEEccCcccccchhhcCChhHHHhccCCeEEE
Confidence 3567777766643 278899999999998876 666543321 1111 111111111 11101
Q ss_pred cChHHHHHHHHh--CCEEEecCc-hHHHHHHhcCCCEEEEecCCCCCccccCCCCCCceeeeeCCCCCCCCCCHHHHHHH
Q 020516 238 TTPGQLAALIND--SAGVIATNT-AAIQLANAREKPSIALFSSELKGRLFVPNAEEKKCTVISSRTGKLIDTPVEAVLNA 314 (325)
Q Consensus 238 ~~~~el~ali~~--a~l~I~~DT-Gp~HlAaAl~~P~iaLfg~t~p~~~~pp~~~~~~~~~~~~~~~~m~~I~~~~V~~~ 314 (325)
.-.. -..++++ +.+||++.. +.+-=|...|||+|++=--.+.. ...-+..+.--+.+.-. ..++.++|.++
T Consensus 330 ~w~P-Q~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~-~na~~~~~~~~~G~~~~----~~~~~~~v~~a 403 (451)
T PLN02410 330 KWAP-QKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQK-VNARYLECVWKIGIQVE----GDLDRGAVERA 403 (451)
T ss_pred ccCC-HHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCH-HHHHHHHHHhCeeEEeC----CcccHHHHHHH
Confidence 1111 2347888 455999875 45556789999999752222211 00000000000011100 36788999999
Q ss_pred HHHHH
Q 020516 315 MQIFN 319 (325)
Q Consensus 315 ~~~~~ 319 (325)
+++++
T Consensus 404 v~~lm 408 (451)
T PLN02410 404 VKRLM 408 (451)
T ss_pred HHHHH
Confidence 88876
No 214
>PLN00414 glycosyltransferase family protein
Probab=22.41 E-value=5.4e+02 Score=24.94 Aligned_cols=136 Identities=8% Similarity=-0.009 Sum_probs=70.8
Q ss_pred CCCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCC-CEE-EecCC-C--ch-HHH-HhHHccCC--Ccccc
Q 020516 167 QGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLF-VIPHE-K--ER-EGV-EDVVGDDA--SIVFI 237 (325)
Q Consensus 167 ~~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~-~vv-l~g~~-~--e~-~~~-~~i~~~~~--~~~~~ 237 (325)
++..|.++.|+-. ..+.+++.|++..|...+ +++ ++-.+ . +. +.. +.+..... +++ +
T Consensus 251 ~~sVvyvsfGS~~-------------~~~~~q~~e~a~gL~~s~~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~~g~v-v 316 (446)
T PLN00414 251 PGSVVFCAFGTQF-------------FFEKDQFQEFCLGMELTGLPFLIAVMPPKGSSTVQEALPEGFEERVKGRGIV-W 316 (446)
T ss_pred CCceEEEeecccc-------------cCCHHHHHHHHHHHHHcCCCeEEEEecCCCcccchhhCChhHHHHhcCCCeE-E
Confidence 4567777766643 267899999999998777 643 33222 1 11 100 11111111 111 1
Q ss_pred cChHHHHHHHHhC--CEEEecCc-hHHHHHHhcCCCEEEEecCCCCCccccCCC-CCCce-eeeeCCCCCCCCCCHHHHH
Q 020516 238 TTPGQLAALINDS--AGVIATNT-AAIQLANAREKPSIALFSSELKGRLFVPNA-EEKKC-TVISSRTGKLIDTPVEAVL 312 (325)
Q Consensus 238 ~~~~el~ali~~a--~l~I~~DT-Gp~HlAaAl~~P~iaLfg~t~p~~~~pp~~-~~~~~-~~~~~~~~~m~~I~~~~V~ 312 (325)
..----.++++++ ++||+++. +-+.=|...|||+|++=--.+.....- +. ..-.+ +.+...+. ..++.++|.
T Consensus 317 ~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~-~~~~~~g~g~~~~~~~~--~~~~~~~i~ 393 (446)
T PLN00414 317 EGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITR-LLTEELEVSVKVQREDS--GWFSKESLR 393 (446)
T ss_pred eccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHH-HHHHHhCeEEEeccccC--CccCHHHHH
Confidence 0001124588777 66999765 566778999999998632222110000 00 00001 11111110 148999999
Q ss_pred HHHHHHH
Q 020516 313 NAMQIFN 319 (325)
Q Consensus 313 ~~~~~~~ 319 (325)
+++++++
T Consensus 394 ~~v~~~m 400 (446)
T PLN00414 394 DTVKSVM 400 (446)
T ss_pred HHHHHHh
Confidence 9999876
No 215
>PLN02764 glycosyltransferase family protein
Probab=22.40 E-value=4.1e+02 Score=25.84 Aligned_cols=139 Identities=7% Similarity=-0.065 Sum_probs=71.7
Q ss_pred CCCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCC-CEEEecCC-Cc-hHHHHhH----HccC--CCcccc
Q 020516 167 QGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFVIPHE-KE-REGVEDV----VGDD--ASIVFI 237 (325)
Q Consensus 167 ~~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~-~vvl~g~~-~e-~~~~~~i----~~~~--~~~~~~ 237 (325)
++..|.++.|+-.. .+.+++.|++..|...+ +++++-.+ .. .+....+ .... -++. +
T Consensus 256 ~~sVvyvsfGS~~~-------------~~~~q~~ela~gL~~s~~pflwv~r~~~~~~~~~~~lp~~f~~r~~grG~v-~ 321 (453)
T PLN02764 256 PDSVVFCALGSQVI-------------LEKDQFQELCLGMELTGSPFLVAVKPPRGSSTIQEALPEGFEERVKGRGVV-W 321 (453)
T ss_pred CCceEEEeeccccc-------------CCHHHHHHHHHHHHhCCCCeEEEEeCCCCCcchhhhCCcchHhhhccCCcE-E
Confidence 45677777666431 67899999999998776 44444322 11 1111111 1100 0111 1
Q ss_pred cChHHHHHHHHh--CCEEEecCc-hHHHHHHhcCCCEEEEecCCCCCccccCCCCCCceeeeeCCCCCCCCCCHHHHHHH
Q 020516 238 TTPGQLAALIND--SAGVIATNT-AAIQLANAREKPSIALFSSELKGRLFVPNAEEKKCTVISSRTGKLIDTPVEAVLNA 314 (325)
Q Consensus 238 ~~~~el~ali~~--a~l~I~~DT-Gp~HlAaAl~~P~iaLfg~t~p~~~~pp~~~~~~~~~~~~~~~~m~~I~~~~V~~~ 314 (325)
..=---..+++. +.+||++.. +-++=|...|||+|++=--.+.....- ...+.--+.+.-.......++.++|.++
T Consensus 322 ~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~-~l~~~~g~gv~~~~~~~~~~~~e~i~~a 400 (453)
T PLN02764 322 GGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTR-LLSDELKVSVEVAREETGWFSKESLRDA 400 (453)
T ss_pred eCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHH-HHHHHhceEEEeccccCCccCHHHHHHH
Confidence 000112457777 566999764 778889999999998632222110000 0000000111110001125899999999
Q ss_pred HHHHHH
Q 020516 315 MQIFNE 320 (325)
Q Consensus 315 ~~~~~~ 320 (325)
+++++.
T Consensus 401 v~~vm~ 406 (453)
T PLN02764 401 INSVMK 406 (453)
T ss_pred HHHHhc
Confidence 999863
No 216
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=22.30 E-value=6.4e+02 Score=23.48 Aligned_cols=39 Identities=15% Similarity=0.137 Sum_probs=30.0
Q ss_pred cChHHHHHHHHh--CCEEEecCchHHHHHHhcCCCEEEEecC
Q 020516 238 TTPGQLAALIND--SAGVIATNTAAIQLANAREKPSIALFSS 277 (325)
Q Consensus 238 ~~~~el~ali~~--a~l~I~~DTGp~HlAaAl~~P~iaLfg~ 277 (325)
.+..++...++. .|++||+.. ..|+|..+|+|.+-+-.|
T Consensus 335 ~d~~~~~~~~~~~~pdl~ig~~~-~~~~~~~~~ip~~~~~~p 375 (399)
T cd00316 335 GDLEELEELIRELKPDLIIGGSK-GRYIAKKLGIPLVRIGFP 375 (399)
T ss_pred CCHHHHHHHHhhcCCCEEEECCc-HHHHHHHhCCCEEEcCCc
Confidence 345677777775 889998875 589999999999866555
No 217
>KOG2804 consensus Phosphorylcholine transferase/cholinephosphate cytidylyltransferase [Lipid transport and metabolism]
Probab=22.15 E-value=28 Score=31.59 Aligned_cols=55 Identities=13% Similarity=0.125 Sum_probs=32.3
Q ss_pred hhHhhhCCCCEEEEEe----------------ccCchhhhhhCCCCceEEEecCCCCCCCchhHHHHHHHHHhcCCcEEE
Q 020516 2 YLHITRYPGVLIDVIA----------------SARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNRYYDMVL 65 (325)
Q Consensus 2 ~~Lk~~~P~a~I~~l~----------------~~~~~~l~~~~p~Vd~v~~~~~~~~~~~~~~~~~l~~~Lr~~~yDl~i 65 (325)
+..|+.|||.-+.|=| ...-...+++|-|||+|++-. .|.- ... -|.+++.|.|-
T Consensus 84 ~QaK~~FPNvyLiVGvc~De~Thk~KG~TVm~e~ERyE~lrHCryVDEVi~~A---PW~l---t~E---FL~~HKIDfVA 154 (348)
T KOG2804|consen 84 EQAKKLFPNVYLIVGVCSDELTHKFKGRTVMNENERYEALRHCRYVDEVIPNA---PWTL---TPE---FLEKHKIDFVA 154 (348)
T ss_pred HHHHHhCCCeEEEEeecCchhhhhccCceecChHHHHHHhhhhhhhhhhccCC---Cccc---cHH---HHHhcccceee
Confidence 4568899995443322 122235578999999998632 2211 112 24577888776
No 218
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=22.10 E-value=1.2e+02 Score=23.49 Aligned_cols=47 Identities=11% Similarity=0.040 Sum_probs=25.5
Q ss_pred HHHHHHHHHhhcCC-CEEEecCCCchHHHHhHHccCCCcccccChHHHHHHHHhCCEEEec
Q 020516 197 QVWAEIANGLREFR-PLFVIPHEKEREGVEDVVGDDASIVFITTPGQLAALINDSAGVIAT 256 (325)
Q Consensus 197 e~~~~l~~~l~~~~-~vvl~g~~~e~~~~~~i~~~~~~~~~~~~~~el~ali~~a~l~I~~ 256 (325)
|++....+.....+ +++++|+. +|.+. .....+....+++.|+++|+
T Consensus 47 ~Rm~~a~~~~~~g~~~vvliGsD------------~P~l~-~~~l~~A~~~L~~~d~VlgP 94 (122)
T PF09837_consen 47 ERMANAFQQAARGYEPVVLIGSD------------CPDLT-PDDLEQAFEALQRHDVVLGP 94 (122)
T ss_dssp HHHHHHHHHHHTT-SEEEEE-SS-------------TT---HHHHHHHHHHTTT-SEEEEE
T ss_pred HHHHHHHHHHHcCCCcEEEEcCC------------CCCCC-HHHHHHHHHHhccCCEEEee
Confidence 57888877773333 77888764 23221 11124556667777887775
No 219
>PHA00159 endonuclease I
Probab=22.10 E-value=76 Score=25.34 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=12.4
Q ss_pred hHhhhCCCCEEEEEeccCchhhhh
Q 020516 3 LHITRYPGVLIDVIASARGKQTFE 26 (325)
Q Consensus 3 ~Lk~~~P~a~I~~l~~~~~~~l~~ 26 (325)
.++++||+..|-++-......+.+
T Consensus 80 li~eQ~P~ldiR~VFs~s~~klyK 103 (148)
T PHA00159 80 LIREQYPELDIRFVFSSSRTKLYK 103 (148)
T ss_pred HHHHHCCCccEEEEEecCCchhhc
Confidence 455555655555555444444443
No 220
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=21.63 E-value=5.9e+02 Score=22.84 Aligned_cols=20 Identities=35% Similarity=0.549 Sum_probs=14.7
Q ss_pred ccChHHHHHHHHhCCEEEec
Q 020516 237 ITTPGQLAALINDSAGVIAT 256 (325)
Q Consensus 237 ~~~~~el~ali~~a~l~I~~ 256 (325)
+.++.+...+++-||.+|..
T Consensus 214 Is~~e~~~~v~~~ADGVIVG 233 (265)
T COG0159 214 ISSPEQAAQVAEAADGVIVG 233 (265)
T ss_pred cCCHHHHHHHHHhCCeEEEc
Confidence 45667788888888887754
No 221
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=21.60 E-value=2.5e+02 Score=22.93 Aligned_cols=29 Identities=21% Similarity=0.172 Sum_probs=22.8
Q ss_pred CCCCCHHHHHHHHHHhhcCC---CEEEecCCC
Q 020516 191 DSLLPIQVWAEIANGLREFR---PLFVIPHEK 219 (325)
Q Consensus 191 ~K~wp~e~~~~l~~~l~~~~---~vvl~g~~~ 219 (325)
+|.+.-+.|++.++.+...+ -++++||+.
T Consensus 77 Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGGa~ 108 (157)
T PRK00103 77 GKQLSSEEFAQELERWRDDGRSDVAFVIGGAD 108 (157)
T ss_pred CCcCCHHHHHHHHHHHHhcCCccEEEEEcCcc
Confidence 36699999999999987654 466778874
No 222
>PF01312 Bac_export_2: FlhB HrpN YscU SpaS Family; InterPro: IPR006135 Salmonella, and related proteobacteria, secrete large amounts of proteins into the culture media. The major secreted proteins are either flagellar proteins or virulence factors [], secreted through the flagellar or virulence export structures respectively. Both secretion systems penetrate the inner and outer membranes and their components bear substantial sequence similarity. Both the flagellar and needle like pilus look fairly similar to each other []. The type III secretion system is of great interest, as it is used to transport virulence factors from the pathogen directly into the host cell [] and is only triggered when the bacterium comes into close contact with the host. It is believed that the family of type III flagellar and pilus inner membrane proteins are used as structural moieties in a complex with several other subunits []. One such set of inner membrane proteins, labeled "S" here for nomenclature purposes, includes the Salmonella and Shigella SpaS, the Yersinia YscU, Rhizobium Y4YO, and the Erwinia HrcU genes, Salmonella FlhB and Escherichia coli EscU [, , , ]. Many of the proteins, in this entry, undergo autocatalytic cleavage promoted by cyclization of a conserved asparagine. These proteins belong to the MEROPS peptidase family N6. ; GO: 0009306 protein secretion, 0016020 membrane; PDB: 3C03_C 3BZT_A 3BZV_B 3BZP_A 3BZX_B 3BZL_B 3C00_A 3BZR_A 3BZY_A 3BZO_A ....
Probab=21.54 E-value=23 Score=32.99 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=18.4
Q ss_pred HHHHHHHhCCEEEecCchHHHHHHhcC
Q 020516 242 QLAALINDSAGVIATNTAAIQLANARE 268 (325)
Q Consensus 242 el~ali~~a~l~I~~DTGp~HlAaAl~ 268 (325)
..++-+..||++|+| |+|+|+|+.
T Consensus 250 ~~~~~V~~A~vVItN---PTH~AVAL~ 273 (343)
T PF01312_consen 250 RMMAAVPKADVVITN---PTHYAVALR 273 (343)
T ss_dssp HHHHHHHT-SEEEEE---TTTEEEEEE
T ss_pred hhhccCCcCcEEEEC---CcceeEEEE
Confidence 456778999999998 779998763
No 223
>PLN02207 UDP-glycosyltransferase
Probab=21.43 E-value=6.1e+02 Score=24.77 Aligned_cols=94 Identities=12% Similarity=0.030 Sum_probs=54.8
Q ss_pred CCCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCC-CEEEecCC-Cc--hHHH-HhHHccCC-CcccccCh
Q 020516 167 QGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFVIPHE-KE--REGV-EDVVGDDA-SIVFITTP 240 (325)
Q Consensus 167 ~~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~-~vvl~g~~-~e--~~~~-~~i~~~~~-~~~~~~~~ 240 (325)
++..|.++.|+.. ..+.+++.+++..|...+ +|++.-.+ .. .+.. +.+.+..+ +..+..=.
T Consensus 274 ~~sVVyvSfGS~~-------------~~~~~q~~ela~~l~~~~~~flW~~r~~~~~~~~~lp~~f~er~~~~g~i~~W~ 340 (468)
T PLN02207 274 EASVVFLCFGSMG-------------RLRGPLVKEIAHGLELCQYRFLWSLRTEEVTNDDLLPEGFLDRVSGRGMICGWS 340 (468)
T ss_pred CCcEEEEEeccCc-------------CCCHHHHHHHHHHHHHCCCcEEEEEeCCCccccccCCHHHHhhcCCCeEEEEeC
Confidence 3567778777643 278899999999999877 66654332 11 1110 11211111 11101101
Q ss_pred HHHHHHHHhCCE--EEecCc-hHHHHHHhcCCCEEEE
Q 020516 241 GQLAALINDSAG--VIATNT-AAIQLANAREKPSIAL 274 (325)
Q Consensus 241 ~el~ali~~a~l--~I~~DT-Gp~HlAaAl~~P~iaL 274 (325)
.| .+++++..+ |||+.. +-+.=|...|||+|++
T Consensus 341 PQ-~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~ 376 (468)
T PLN02207 341 PQ-VEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTW 376 (468)
T ss_pred CH-HHHhcccccceeeecCccccHHHHHHcCCCEEec
Confidence 12 346677444 999885 4567789999999985
No 224
>PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E ....
Probab=21.41 E-value=4.6e+02 Score=23.92 Aligned_cols=87 Identities=14% Similarity=0.131 Sum_probs=43.7
Q ss_pred CCHHHHHHHHHHhhcCCCEEEecCC---CchHHHHh-HHccCCCcc-----cccChHHHHH---HHHh--CCEEEec---
Q 020516 194 LPIQVWAEIANGLREFRPLFVIPHE---KEREGVED-VVGDDASIV-----FITTPGQLAA---LIND--SAGVIAT--- 256 (325)
Q Consensus 194 wp~e~~~~l~~~l~~~~~vvl~g~~---~e~~~~~~-i~~~~~~~~-----~~~~~~el~a---li~~--a~l~I~~--- 256 (325)
...+.|.+|.+.+.++ +.|+|.. ...+.++. +.....|.. .+.+..|+.. +.++ ...+||.
T Consensus 161 dD~e~w~~lt~~~g~~--~~iVGDDl~vTn~~ri~~~i~~~~~na~llK~NQigTvte~lea~~~a~~~g~~~vvS~rsg 238 (295)
T PF00113_consen 161 DDWEGWAKLTKRLGDK--IQIVGDDLFVTNPKRIKKGIEKKACNALLLKPNQIGTVTETLEAVKLAKSAGWGVVVSHRSG 238 (295)
T ss_dssp T-HHHHHHHHHHHTTT--SEEEESTTTTT-HHHHHHHHHCT--SEEEE-HHHHSSHHHHHHHHHHHHHTT-EEEEE--SS
T ss_pred cchHHHHHHHHhhhcc--eeeecccccccchhhhhccchhhhccchhhhhhhhHHHHHHHHHHHHHHHCCceeeccCCCC
Confidence 3456888887777543 3455432 22333333 222222211 1123334433 3333 3378888
Q ss_pred ---CchHHHHHHhcCCCEEEEecCCCCCc
Q 020516 257 ---NTAAIQLANAREKPSIALFSSELKGR 282 (325)
Q Consensus 257 ---DTGp~HlAaAl~~P~iaLfg~t~p~~ 282 (325)
||=..|||+++|++.|=.=+|....|
T Consensus 239 EteD~~iadLaVg~~a~~iK~G~p~r~Er 267 (295)
T PF00113_consen 239 ETEDTFIADLAVGLGAGQIKTGAPCRGER 267 (295)
T ss_dssp --S--HHHHHHHHTT-SEEEEESSSSHHH
T ss_pred CcCchhHHHHHhccCcCeEecccchhhHH
Confidence 66699999999999998866654443
No 225
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=21.04 E-value=4.9e+02 Score=24.25 Aligned_cols=65 Identities=6% Similarity=0.030 Sum_probs=37.1
Q ss_pred HhhhCCCCEEEEEeccCch---hhh----hhCCCCc-eEEEecCCCCCCCchhHHHHHHHHHhcCCcEEEEecCC
Q 020516 4 HITRYPGVLIDVIASARGK---QTF----ELNKNVR-WANVYDLDDDWPEPAEYTDILGVMKNRYYDMVLSTKLA 70 (325)
Q Consensus 4 Lk~~~P~a~I~~l~~~~~~---~l~----~~~p~Vd-~v~~~~~~~~~~~~~~~~~l~~~Lr~~~yDl~i~~~~~ 70 (325)
+++.||+.+|-++.+.... +++ +.+|.++ +++.-+....+ ..+...+.+.+++-++|+++.+..+
T Consensus 64 ~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~~~~~G~--~~K~~~l~~~~~~a~ge~i~~~DaD 136 (373)
T TIGR03472 64 CRQDYPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVIDARRHGP--NRKVSNLINMLPHARHDILVIADSD 136 (373)
T ss_pred HhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEECCCCCCC--ChHHHHHHHHHHhccCCEEEEECCC
Confidence 4677999999887655442 332 4567653 22322211111 1234455556778889999977533
No 226
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=20.90 E-value=2.9e+02 Score=23.29 Aligned_cols=29 Identities=10% Similarity=0.162 Sum_probs=22.8
Q ss_pred EEecCchHHHHHHhcCCCEEEEecCCCCC
Q 020516 253 VIATNTAAIQLANAREKPSIALFSSELKG 281 (325)
Q Consensus 253 ~I~~DTGp~HlAaAl~~P~iaLfg~t~p~ 281 (325)
++|.-+..++.|.-.|.|.++|++.++..
T Consensus 95 i~G~~glLl~~a~~~gi~ai~L~~e~p~y 123 (188)
T TIGR00162 95 IIGASGLLLGVSELEGIPGACLMGETPGY 123 (188)
T ss_pred cccHHHHHHHHHHHCCCCeEEEEEeCCCC
Confidence 44555556678899999999999999764
No 227
>PRK06298 type III secretion system protein; Validated
Probab=20.09 E-value=21 Score=33.55 Aligned_cols=34 Identities=15% Similarity=0.253 Sum_probs=24.6
Q ss_pred HHHHHHHhCCEEEecCchHHHHHHhc-------CCCEEEEecCC
Q 020516 242 QLAALINDSAGVIATNTAAIQLANAR-------EKPSIALFSSE 278 (325)
Q Consensus 242 el~ali~~a~l~I~~DTGp~HlAaAl-------~~P~iaLfg~t 278 (325)
..++=+.+||++|+| |+|+|.|+ +.|+|.-=|..
T Consensus 249 ~m~~~V~~AdVVItN---PTH~AVALkYd~~~~~AP~VvAKG~d 289 (356)
T PRK06298 249 DTSSQVKHASAVVSN---PKDIAVAIGYMPEKYKAPWIIAMGIN 289 (356)
T ss_pred HHhhcCCCCcEEEEC---CCceEEEeEeCCCCCCCCEEEEeeCc
Confidence 345678899999998 78999876 34555555544
No 228
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=20.07 E-value=4.8e+02 Score=21.18 Aligned_cols=29 Identities=7% Similarity=-0.041 Sum_probs=23.0
Q ss_pred CCCCCHHHHHHHHHHhhcCC--CEEEecCCC
Q 020516 191 DSLLPIQVWAEIANGLREFR--PLFVIPHEK 219 (325)
Q Consensus 191 ~K~wp~e~~~~l~~~l~~~~--~vvl~g~~~ 219 (325)
+|.+.-+.|++.++.+...+ -.+++||+.
T Consensus 75 Gk~~sS~~fA~~l~~~~~~g~~i~FvIGGa~ 105 (153)
T TIGR00246 75 GKPWTTPQLADTLEKWKTDGRDVTLLIGGPE 105 (153)
T ss_pred CCcCCHHHHHHHHHHHhccCCeEEEEEcCCC
Confidence 36699999999999987765 466778874
No 229
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=20.05 E-value=6.2e+02 Score=22.48 Aligned_cols=83 Identities=5% Similarity=-0.124 Sum_probs=49.7
Q ss_pred hHhhhCCCCEEEEEeccCc----hhhhhh--CCCCceEEEecCCCC--CCCchhHHHHHHHHHhcCCcEEEEecCC----
Q 020516 3 LHITRYPGVLIDVIASARG----KQTFEL--NKNVRWANVYDLDDD--WPEPAEYTDILGVMKNRYYDMVLSTKLA---- 70 (325)
Q Consensus 3 ~Lk~~~P~a~I~~l~~~~~----~~l~~~--~p~Vd~v~~~~~~~~--~~~~~~~~~l~~~Lr~~~yDl~i~~~~~---- 70 (325)
.||+++.+.++++++-... ...++. -=+.|+.+.+..... ......-.-|...+++..||+++.-..+
T Consensus 47 rlke~~~g~~Vtvvs~Gp~~a~~~~~lr~aLAmGaD~avli~d~~~~g~D~~~tA~~La~ai~~~~~DLVl~G~~s~D~~ 126 (256)
T PRK03359 47 QLKQQAAEAQVTALSVGGKALTNAKGRKDVLSRGPDELIVVIDDQFEQALPQQTASALAAAAQKAGFDLILCGDGSSDLY 126 (256)
T ss_pred HHhhhcCCCEEEEEEECCcchhhHHHHHHHHHcCCCEEEEEecCcccCcCHHHHHHHHHHHHHHhCCCEEEEcCccccCC
Confidence 4788887789999974332 234553 237887777753211 1112222334456777789999965422
Q ss_pred -chHHHHHHHHhCCCc
Q 020516 71 -GLGHAAFLFMTTARD 85 (325)
Q Consensus 71 -~~~~~~~~~~~~a~~ 85 (325)
+.--..++.++|.|.
T Consensus 127 tgqvg~~lAe~Lg~P~ 142 (256)
T PRK03359 127 AQQVGLLVGEILNIPA 142 (256)
T ss_pred CCcHHHHHHHHhCCCc
Confidence 234467888888884
Done!