BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020518
(325 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3C5W|P Chain P, Complex Between Pp2a-Specific Methylesterase Pme-1 And
Pp2a Core Enzyme
Length = 310
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/293 (23%), Positives = 114/293 (38%), Gaps = 42/293 (14%)
Query: 32 YEEVRSSSDRPYTSTAFVLHGLLGSGRNWRSFSRNXXXXXXXXXXXXEWRMVLVDLRNHG 91
+ +S S+ P +LHG S +W F+ + R+V +DLR+HG
Sbjct: 33 FRVYKSGSEGP---VLLLLHGGGHSALSWAVFT-------AAIISRVQCRIVALDLRSHG 82
Query: 92 RSAEIEGLDPPHDIXXXXXXXXXXXXXXGWDWPDVVIGHSMGGKVALHFAQSCARADYGQ 151
+ D + P ++IGH+MGG +A+H A S
Sbjct: 83 ETKVKNPEDLSAETMAKDVGNVVEAMYGDLPPPIMLIGHAMGGAIAVHTASS-------N 135
Query: 152 FVALPKQLWVLDSVPGKVKTENSEGEVEKVL----QTLQSLPSSIPSRKWLVNHMMELGF 207
V L ++D V G ++ ++ L +T +SL ++I +W V
Sbjct: 136 LVPSLLGLCMIDVVEGTAM--DALNSMQNFLRGRPKTFKSLENAI---EWSVKSGQIRNL 190
Query: 208 SKSLSEWIGTNLKKSGERETWAFNLDGAVQMFNS-YREMSYWPLLEHPPQGMEIAIVRAE 266
+ +G + G+ TW L + ++ +R +S L P+ + +A V
Sbjct: 191 ESARVSMVGQVKQCEGKPYTWRIELAKTEKYWDGWFRGLSNLFLSCPIPKLLLLAGV--- 247
Query: 267 KSDRWDPDVIQRLEGLANRQGDGSEGKVSVHVLPNAGHWVHVDNPKGLLEIVA 319
DR D D+ + QG K + VLP GH VH D P + E VA
Sbjct: 248 --DRLDKDLT-----IGQMQG-----KFQMQVLPQCGHAVHEDAPDKVAEAVA 288
>pdb|3C5V|A Chain A, Pp2a-Specific Methylesterase Apo Form (Pme)
Length = 316
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 72/303 (23%), Positives = 113/303 (37%), Gaps = 52/303 (17%)
Query: 32 YEEVRSSSDRPYTSTAFVLHGLLGSGRNWRSFSRNXXXXXXXXXXXXEWRMVLVDLRNHG 91
+ +S S+ P +LHG S +W F+ + R+V +DLR+HG
Sbjct: 29 FRVYKSGSEGP---VLLLLHGGGHSALSWAVFT-------AAIISRVQCRIVALDLRSHG 78
Query: 92 RSAEIEGLDPPHDIXXXXXXXXXXXXXXGWDWPDVVIGHSMGGKVALHFAQSCARADYGQ 151
+ D + P ++IGHSMGG +A+H A S
Sbjct: 79 ETKVKNPEDLSAETMAKDVGNVVEAMYGDLPPPIMLIGHSMGGAIAVHTASS-------N 131
Query: 152 FVALPKQLWVLDSVPGKVKTENSEGEVEKVL----QTLQSLPSSIPSRKWLVN------- 200
V L ++D V G ++ ++ L +T +SL ++I +W V
Sbjct: 132 LVPSLLGLCMIDVVEGTAM--DALNSMQNFLRGRPKTFKSLENAI---EWSVKSGQIRNL 186
Query: 201 ---HMMELGFSKSLSEWIGTNLKKSGERETWAFNLDGAVQMFNS-YREMSYWPLLEHPPQ 256
+ +G K K TW L + ++ +R +S L P+
Sbjct: 187 ESARVSMVGQVKQCEGITSPEGSKKDHPYTWRIELAKTEKYWDGWFRGLSNLFLSCPIPK 246
Query: 257 GMEIAIVRAEKSDRWDPDVIQRLEGLANRQGDGSEGKVSVHVLPNAGHWVHVDNPKGLLE 316
+ +A V DR D D+ + Q GK + VLP GH VH D P + E
Sbjct: 247 LLLLAGV-----DRLDKDLT-----IGQMQ-----GKFQMQVLPQCGHAVHEDAPDKVAE 291
Query: 317 IVA 319
VA
Sbjct: 292 AVA 294
>pdb|3BF8|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF8|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 58/291 (19%), Positives = 106/291 (36%), Gaps = 58/291 (19%)
Query: 36 RSSSDRPYTSTAFVLHGLLGSGRNWRSFSRNXXXXXXXXXXXXEWRMVLVDLRNHGRSAE 95
+++ ++ S ++HGL GS N +R+ + ++ VD+RNHG S
Sbjct: 8 QTAQNQHNNSPIVLVHGLFGSLDNLGVLARDLVN---------DHNIIQVDVRNHGLSPR 58
Query: 96 IEGLDPPHDIXXXXXXXXXXXXXXGWDWPDVVIGHSMGGKVALHF-AQSCARADYGQFVA 154
++ P IGHSMGGK + A + R D
Sbjct: 59 EPVMNYPAMAQDLVDTLDAQQIDKA-----TFIGHSMGGKAVMALTALAPDRID------ 107
Query: 155 LPKQLWVLDSVPGKVKTENSEGEVEKVLQTLQSLPSSIPSRKWLVNHMMELGFSKSLSEW 214
+L +D P + ++ + ++ S + +M ++ E
Sbjct: 108 ---KLVAIDIAPVDYHVRRHD----EIFAAINAVSESDAQTRQQAAAIMRQHLNE---EG 157
Query: 215 IGTNLKKSGERETWAFNLDGAVQMFNSYREMSYW---PLLEHP----PQGMEIAIVRAEK 267
+ L KS W FN+ +++ Y + W P +HP P G +
Sbjct: 158 VIQFLLKSFVDGEWRFNVP---VLWDQYPHIVGWEKIPAWDHPALFIPGGNSPYV----- 209
Query: 268 SDRWDPDVIQRLEGLANRQGDGSEGKVSVHVLPNAGHWVHVDNPKGLLEIV 318
S+++ D++ + + HV+ AGHWVH + P +L +
Sbjct: 210 SEQYRDDLLAQFP------------QARAHVIAGAGHWVHAEKPDAVLRAI 248
>pdb|3BF7|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF7|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 58/291 (19%), Positives = 106/291 (36%), Gaps = 58/291 (19%)
Query: 36 RSSSDRPYTSTAFVLHGLLGSGRNWRSFSRNXXXXXXXXXXXXEWRMVLVDLRNHGRSAE 95
+++ ++ S ++HGL GS N +R+ + ++ VD+RNHG S
Sbjct: 8 QTAQNQHNNSPIVLVHGLFGSLDNLGVLARDLVN---------DHNIIQVDVRNHGLSPR 58
Query: 96 IEGLDPPHDIXXXXXXXXXXXXXXGWDWPDVVIGHSMGGKVALHF-AQSCARADYGQFVA 154
++ P IGHSMGGK + A + R D
Sbjct: 59 EPVMNYPAMAQDLVDTLDALQIDKA-----TFIGHSMGGKAVMALTALAPDRID------ 107
Query: 155 LPKQLWVLDSVPGKVKTENSEGEVEKVLQTLQSLPSSIPSRKWLVNHMMELGFSKSLSEW 214
+L +D P + ++ + ++ S + +M ++ E
Sbjct: 108 ---KLVAIDIAPVDYHVRRHD----EIFAAINAVSESDAQTRQQAAAIMRQHLNE---EG 157
Query: 215 IGTNLKKSGERETWAFNLDGAVQMFNSYREMSYW---PLLEHP----PQGMEIAIVRAEK 267
+ L KS W FN+ +++ Y + W P +HP P G +
Sbjct: 158 VIQFLLKSFVDGEWRFNVP---VLWDQYPHIVGWEKIPAWDHPALFIPGGNSPYV----- 209
Query: 268 SDRWDPDVIQRLEGLANRQGDGSEGKVSVHVLPNAGHWVHVDNPKGLLEIV 318
S+++ D++ + + HV+ AGHWVH + P +L +
Sbjct: 210 SEQYRDDLLAQFP------------QARAHVIAGAGHWVHAEKPDAVLRAI 248
>pdb|1TR2|A Chain A, Crystal Structure Of Human Full-Length Vinculin (Residues
1- 1066)
pdb|1TR2|B Chain B, Crystal Structure Of Human Full-Length Vinculin (Residues
1- 1066)
Length = 1066
Score = 33.1 bits (74), Expect = 0.21, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 158 QLWVLDSVPGKVKTENSEGEVEKVLQTLQSLPSSIPSRKWLVN 200
Q+ D P +K EN+ ++ + Q LQS P S+P+R +L++
Sbjct: 68 QILKRDXPPAFIKVENACTKLVQAAQXLQSDPYSVPARDYLID 110
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 10/100 (10%)
Query: 42 PYTSTAFVLHGLLGSGRNWRSFSRNXXXXXXXXXXXXEWRMVLVDLRNHGRSAEIEGLDP 101
P +HG+L G W+ + +R+V DL HGRS+ +E +
Sbjct: 24 PEHPVVLCIHGILEQGLAWQEVA--------LPLAAQGYRVVAPDLFGHGRSSHLEMVTS 75
Query: 102 PHDIXXXXXXXXXXXXXXGWDWPDVVIGHSMGGKVALHFA 141
+ D P +++GHSMG +A A
Sbjct: 76 YSSLTFLAQIDRVIQELP--DQPLLLVGHSMGAMLATAIA 113
>pdb|1RKC|A Chain A, Human Vinculin Head (1-258) In Complex With Talin's
Vinculin Binding Site 3 (Residues 1944-1969)
pdb|1RKE|A Chain A, Human Vinculin Head (1-258) In Complex With Human Vinculin
Tail (879-1066)
Length = 262
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 158 QLWVLDSVPGKVKTENSEGEVEKVLQTLQSLPSSIPSRKWLVN 200
Q+ D P +K EN+ ++ + Q LQS P S+P+R +L++
Sbjct: 72 QILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLID 114
>pdb|3S90|A Chain A, Human Vinculin Head Domain Vh1 (Residues 1-252) In Complex
With Murine Talin (Vbs33; Residues 1512-1546)
pdb|3S90|B Chain B, Human Vinculin Head Domain Vh1 (Residues 1-252) In Complex
With Murine Talin (Vbs33; Residues 1512-1546)
pdb|4EHP|A Chain A, Crystal Structure Of Human Vinculin Head Domain (Residues
1-252) In Complex With Alpha-Catenin (Residues 277-382)
Length = 253
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 158 QLWVLDSVPGKVKTENSEGEVEKVLQTLQSLPSSIPSRKWLVN 200
Q+ D P +K EN+ ++ + Q LQS P S+P+R +L++
Sbjct: 69 QILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLID 111
>pdb|3TJ6|A Chain A, Human Vinculin Head Domain (Vh1, Residues 1-258) In
Complex With The Vinculin Binding Site Of The Surface
Cell Antigen 4 (Sca4-Vbs-C; Residues 812-835) From
Rickettsia Rickettsii
Length = 257
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 158 QLWVLDSVPGKVKTENSEGEVEKVLQTLQSLPSSIPSRKWLVN 200
Q+ D P +K EN+ ++ + Q LQS P S+P+R +L++
Sbjct: 68 QILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLID 110
>pdb|1YDI|A Chain A, Human Vinculin Head Domain (Vh1, 1-258) In Complex With
Human Alpha-Actinin's Vinculin-Binding Site (Residues
731- 760)
Length = 263
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 158 QLWVLDSVPGKVKTENSEGEVEKVLQTLQSLPSSIPSRKWLVN 200
Q+ D P +K EN+ ++ + Q LQS P S+P+R +L++
Sbjct: 73 QILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLID 115
>pdb|1SYQ|A Chain A, Human Vinculin Head Domain Vh1, Residues 1-258, In Complex
W Talin's Vinculin Binding Site 1, Residues 607-636
Length = 264
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 158 QLWVLDSVPGKVKTENSEGEVEKVLQTLQSLPSSIPSRKWLVN 200
Q+ D P +K EN+ ++ + Q LQS P S+P+R +L++
Sbjct: 74 QILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLID 116
>pdb|3TJ5|A Chain A, Human Vinculin Head Domain (Vh1, Residues 1-258) In
Complex With The Vinculin Binding Site Of The Surface
Cell Antigen 4 (Sca4-Vbs-N; Residues 412-434) From
Rickettsia Rickettsii
Length = 255
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 158 QLWVLDSVPGKVKTENSEGEVEKVLQTLQSLPSSIPSRKWLVN 200
Q+ D P +K EN+ ++ + Q LQS P S+P+R +L++
Sbjct: 68 QILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLID 110
>pdb|3RF3|A Chain A, Shigella Ipaa-Vbs3 In Complex With Human Vinculin
pdb|3RF3|B Chain B, Shigella Ipaa-Vbs3 In Complex With Human Vinculin
pdb|4DJ9|A Chain A, Human Vinculin Head Domain Vh1 (Residues 1-258) In Complex
With The Talin Vinculin Binding Site 50 (Vbs50, Residues
2078-2099)
Length = 258
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 158 QLWVLDSVPGKVKTENSEGEVEKVLQTLQSLPSSIPSRKWLVN 200
Q+ D P +K EN+ ++ + Q LQS P S+P+R +L++
Sbjct: 68 QILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLID 110
>pdb|2GWW|A Chain A, Human Vinculin (Head Domain, Vh1, Residues 1-258) In
Complex With Shigella's Ipaa Vinculin Binding Site
(Residues 602-633)
pdb|2HSQ|A Chain A, Human Vinculin (Head Domain, Vh1, Residues 1-258) In
Complex With Shigella's Ipaa Vinculin Binding Site 2
(Residues 565-587)
pdb|2IBF|A Chain A, Human Vinculin's Head Domain (Vh1, Residues 1-258) In
Complex With Two Vinculin Binding Sites Of Shigella
Flexneri's Ipaa (Residues 565-587)
Length = 266
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 158 QLWVLDSVPGKVKTENSEGEVEKVLQTLQSLPSSIPSRKWLVN 200
Q+ D P +K EN+ ++ + Q LQS P S+P+R +L++
Sbjct: 76 QILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLID 118
>pdb|1U6H|A Chain A, Vinculin Head (0-258) In Complex With The Talin Vinculin
Binding Site 2 (849-879)
pdb|1XWJ|A Chain A, Vinculin Head (1-258) In Complex With The Talin Vinculin
Binding Site 3 (1945-1969)
pdb|3ZDL|A Chain A, Vinculin Head (1-258) In Complex With A Riam Fragment
Length = 280
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 158 QLWVLDSVPGKVKTENSEGEVEKVLQTLQSLPSSIPSRKWLVN 200
Q+ D P +K EN+ ++ + Q LQ+ P S+P+R +L++
Sbjct: 89 QILKRDMPPAFIKVENACTKLVRAAQMLQADPYSVPARDYLID 131
>pdb|1ZVZ|A Chain A, Vinculin Head (0-258) In Complex With The Talin Rod
Residue 820-844
pdb|1ZW2|A Chain A, Vinculin Head (0-258) In Complex With The Talin Rod
Residues 2345-2369
pdb|1ZW3|A Chain A, Vinculin Head (0-258) In Complex With The Talin Rod
Residues 1630-1652
Length = 279
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 158 QLWVLDSVPGKVKTENSEGEVEKVLQTLQSLPSSIPSRKWLVN 200
Q+ D P +K EN+ ++ + Q LQ+ P S+P+R +L++
Sbjct: 88 QILKRDMPPAFIKVENACTKLVRAAQMLQADPYSVPARDYLID 130
>pdb|1T01|A Chain A, Vinculin Complexed With The Vbs1 Helix From Talin
Length = 255
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 158 QLWVLDSVPGKVKTENSEGEVEKVLQTLQSLPSSIPSRKWLVN 200
Q+ D P +K EN+ ++ + Q LQ+ P S+P+R +L++
Sbjct: 69 QILKRDMPPAFIKVENACTKLVRAAQMLQADPYSVPARDYLID 111
>pdb|2GDC|A Chain A, Structure Of Vinculin Vd1 IPAA560-633 Complex
Length = 266
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 158 QLWVLDSVPGKVKTENSEGEVEKVLQTLQSLPSSIPSRKWLVN 200
Q+ D P +K EN+ ++ + Q LQ+ P S+P+R +L++
Sbjct: 68 QILKRDMPPAFIKVENACTKLVRAAQMLQADPYSVPARDYLID 110
>pdb|4E17|A Chain A, Alpha-E-Catenin Is An Autoinhibited Molecule That
Co-Activates Vinculin
pdb|4E18|A Chain A, Alpha-E-Catenin Is An Autoinhibited Molecule That
Co-Activates Vinculin
Length = 263
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 158 QLWVLDSVPGKVKTENSEGEVEKVLQTLQSLPSSIPSRKWLVN 200
Q+ D P +K EN+ ++ + Q LQ+ P S+P+R +L++
Sbjct: 72 QILKRDMPPAFIKVENACTKLVRAAQMLQADPYSVPARDYLID 114
>pdb|4GFJ|A Chain A, Crystal Structure Of Topo-78, An N-Terminal 78kda Fragment
Of Topoisomerase V
Length = 685
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 14/95 (14%)
Query: 176 GEVEKVLQTLQSLPSSIPSRKWLVNHMMELGFSKSLSEWIGTNLKKSGERETWAFNLDGA 235
G++EK + + S+ R+ V + ELGFS I KK E AF+L+ A
Sbjct: 526 GDLEKADELKRKYGSASAVRRLPVEELRELGFSDDEIAEIKGIPKKLRE----AFDLETA 581
Query: 236 VQMFNSY-------REMSYWPLLE---HPPQGMEI 260
+++ Y R +SY LLE P EI
Sbjct: 582 AELYERYGSLKEIGRRLSYDDLLELGATPKAAAEI 616
>pdb|1ST6|A Chain A, Crystal Structure Of A Cytoskeletal Protein
Length = 1069
Score = 32.0 bits (71), Expect = 0.52, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 158 QLWVLDSVPGKVKTENSEGEVEKVLQTLQSLPSSIPSRKWLVN 200
Q+ D P +K EN+ ++ + Q LQ+ P S+P+R +L++
Sbjct: 71 QILKRDMPPAFIKVENACTKLVRAAQMLQADPYSVPARDYLID 113
>pdb|2RON|A Chain A, The External Thioesterase Of The Surfactin-Synthetase
pdb|2K2Q|B Chain B, Complex Structure Of The External Thioesterase Of The
Surfactin-Synthetase With A Carrier Domain
Length = 242
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 122 DWPDVVIGHSMGGKVALHFAQSCAR 146
D P V+ GHSMGG + AQ R
Sbjct: 77 DRPFVLFGHSMGGMITFRLAQKLER 101
>pdb|3P2M|A Chain A, Crystal Structure Of A Novel Esterase Rv0045c From
Mycobacterium Tuberculosis
Length = 330
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 296 VHVLPNAGHWVHVDNPKGLLEIV 318
VH++ +GH V D P+ L+EIV
Sbjct: 301 VHIVEKSGHSVQSDQPRALIEIV 323
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,522,517
Number of Sequences: 62578
Number of extensions: 367865
Number of successful extensions: 843
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 816
Number of HSP's gapped (non-prelim): 27
length of query: 325
length of database: 14,973,337
effective HSP length: 99
effective length of query: 226
effective length of database: 8,778,115
effective search space: 1983853990
effective search space used: 1983853990
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)