RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 020521
(325 letters)
>gnl|CDD|238519 cd01086, MetAP1, Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and Peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides.
Length = 238
Score = 303 bits (779), Expect = e-104
Identities = 97/191 (50%), Positives = 133/191 (69%), Gaps = 1/191 (0%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
IE MR +GR+ A+VL+ +KPG+TT E+D+ H+ I ++GAYP+PLGY GFPKS+CT
Sbjct: 1 IEGMREAGRIVAEVLDELAKAIKPGVTTKELDQIAHEFIEEHGAYPAPLGYYGFPKSICT 60
Query: 176 SVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDC 235
SVNE +CHGIPD R L+DGD +NIDV V L+GYHGD++ TF G+V +EA+ LV+VT++
Sbjct: 61 SVNEVVCHGIPDDRVLKDGDIVNIDVGVELDGYHGDSARTFIVGEVSEEAKKLVEVTEEA 120
Query: 236 LHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHG 295
L+K I PG IG I+ +A++ Y VVR+F GHGIGR FH +P + +Y G
Sbjct: 121 LYKGIEAVKPGNRIGDIGHAIEKYAEKNGYSVVREFGGHGIGRKFHEEPQIPNYGRPGTG 180
Query: 296 -RMVLNQTFTI 305
++ FTI
Sbjct: 181 PKLKPGMVFTI 191
>gnl|CDD|235576 PRK05716, PRK05716, methionine aminopeptidase; Validated.
Length = 252
Score = 289 bits (742), Expect = 5e-98
Identities = 96/197 (48%), Positives = 128/197 (64%), Gaps = 1/197 (0%)
Query: 110 VHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGF 169
+ + IE MRV+GRLAA+VL+ VKPG+TT E+D+ + I D GA P+PLGY GF
Sbjct: 5 IKTPEEIEKMRVAGRLAAEVLDEIEPHVKPGVTTKELDRIAEEYIRDQGAIPAPLGYHGF 64
Query: 170 PKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLV 229
PKS+CTSVNE +CHGIP + L++GD +NIDVTV +GYHGDTS TF G++ E + L
Sbjct: 65 PKSICTSVNEVVCHGIPSDKVLKEGDIVNIDVTVIKDGYHGDTSRTFGVGEISPEDKRLC 124
Query: 230 KVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHY 289
+VTK+ L+ I+ PG IG IQ +A+ + VVR++ GHGIGR FH +P + HY
Sbjct: 125 EVTKEALYLGIAAVKPGARLGDIGHAIQKYAEAEGFSVVREYCGHGIGRKFHEEPQIPHY 184
Query: 290 RNNDHG-RMVLNQTFTI 305
G + FTI
Sbjct: 185 GAPGDGPVLKEGMVFTI 201
>gnl|CDD|215607 PLN03158, PLN03158, methionine aminopeptidase; Provisional.
Length = 396
Score = 273 bits (700), Expect = 9e-90
Identities = 122/246 (49%), Positives = 156/246 (63%), Gaps = 16/246 (6%)
Query: 75 LRPGKVSPHRPVPDHIPRP-------PYV--NS-QKPIGIVSGPEVHDEKGIECMRVSGR 124
LRP +SP R VPDHIP+P P + NS + + PE I+ MR + R
Sbjct: 97 LRPYPISPRRVVPDHIPKPDWALDGTPKIEPNSDLQHSVEIKTPE-----QIQRMRETCR 151
Query: 125 LAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHG 184
+A +VL+ A +KPG+TTDEID+ VH+ I G YPSPL Y FPKS CTSVNE ICHG
Sbjct: 152 IAREVLDAAARAIKPGVTTDEIDRVVHEATIAAGGYPSPLNYHFFPKSCCTSVNEVICHG 211
Query: 185 IPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCA 244
IPD+R LEDGD +N+DVTVY G HGD + TFF G+VD+ +R LVK T +CL KAI++
Sbjct: 212 IPDARKLEDGDIVNVDVTVYYKGCHGDLNETFFVGNVDEASRQLVKCTYECLEKAIAIVK 271
Query: 245 PGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHY-RNNDHGRMVLNQTF 303
PG+ Y+++G+ I HA VV+ + GHGIG +FH P + HY RN G M Q F
Sbjct: 272 PGVRYREVGEVINRHATMSGLSVVKSYCGHGIGELFHCAPNIPHYARNKAVGVMKAGQVF 331
Query: 304 TIGNII 309
TI +I
Sbjct: 332 TIEPMI 337
>gnl|CDD|223103 COG0024, Map, Methionine aminopeptidase [Translation, ribosomal
structure and biogenesis].
Length = 255
Score = 254 bits (652), Expect = 2e-84
Identities = 84/200 (42%), Positives = 123/200 (61%), Gaps = 3/200 (1%)
Query: 109 EVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGG 168
+ + IE MR +G++AA+ L+ +LVKPG+TT E+D+ + I + GAYP+ LGY G
Sbjct: 4 SIKTPEEIEKMREAGKIAAKALKEVASLVKPGVTTLELDEIAEEFIREKGAYPAFLGYKG 63
Query: 169 FPKSVCTSVNECICHGIP-DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDE-AR 226
FP C SVNE + HGIP D + L++GD + IDV +++GY GDT+ TF G+V DE A+
Sbjct: 64 FPFPTCISVNEVVAHGIPGDKKVLKEGDIVKIDVGAHIDGYIGDTAITFVVGEVSDEDAK 123
Query: 227 NLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVV 286
L++ TK+ L+ I PG IG+ IQ++A+ + VVR GHGIGR H +P +
Sbjct: 124 RLLEATKEALYAGIEAVKPGARLGDIGRAIQEYAESRGFSVVRNLTGHGIGRELHEEPSI 183
Query: 287 LHYRNNDHG-RMVLNQTFTI 305
+Y + G R+ F I
Sbjct: 184 PNYGKDGTGVRLKEGMVFAI 203
>gnl|CDD|237252 PRK12896, PRK12896, methionine aminopeptidase; Reviewed.
Length = 255
Score = 252 bits (647), Expect = 1e-83
Identities = 83/206 (40%), Positives = 116/206 (56%), Gaps = 2/206 (0%)
Query: 106 SGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLG 165
G E+ + +E MR GR+ A L+ G V+PG+TT E+D+ + + ++GA PSP G
Sbjct: 6 RGMEIKSPRELEKMRKIGRIVATALKEMGKAVEPGMTTKELDRIAEKRLEEHGAIPSPEG 65
Query: 166 YGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEA 225
Y GFP S C SVNE + HGIP R ++DGD +NIDV+ YL+GYHGDT TF G V +EA
Sbjct: 66 YYGFPGSTCISVNEEVAHGIPGPRVIKDGDLVNIDVSAYLDGYHGDTGITFAVGPVSEEA 125
Query: 226 RNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPV 285
L +V ++ L I G IG+ I+D A + Y VVR GHG+GR H +P
Sbjct: 126 EKLCRVAEEALWAGIKQVKAGRPLNDIGRAIEDFAKKNGYSVVRDLTGHGVGRSLHEEPS 185
Query: 286 VLHYRNNDHGRMVLN--QTFTIGNII 309
V+ + +L T + +
Sbjct: 186 VILTYTDPLPNRLLRPGMTLAVEPFL 211
>gnl|CDD|129591 TIGR00500, met_pdase_I, methionine aminopeptidase, type I.
Methionine aminopeptidase is a cobalt-binding enzyme.
Bacterial and organellar examples (type I) differ from
eukaroytic and archaeal (type II) examples in lacking a
region of approximately 60 amino acids between the 4th
and 5th cobalt-binding ligands. This model describes
type I. The role of this protein in general is to
produce the mature form of cytosolic proteins by
removing the N-terminal methionine [Protein fate,
Protein modification and repair].
Length = 247
Score = 230 bits (588), Expect = 5e-75
Identities = 90/191 (47%), Positives = 123/191 (64%), Gaps = 1/191 (0%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
IE +R +GRLAA+VLE VKPG++T E+D+ I +GA P+ LGY GFP SVC
Sbjct: 9 IEKIRKAGRLAAEVLEELEREVKPGVSTKELDRIAKDFIEKHGAKPAFLGYYGFPGSVCI 68
Query: 176 SVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDC 235
SVNE + HGIPD + L+DGD +NIDV V +GYHGDT+ TF G + EA L++ T++
Sbjct: 69 SVNEVVIHGIPDKKVLKDGDIVNIDVGVIYDGYHGDTAKTFLVGKISPEAEKLLECTEES 128
Query: 236 LHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHY-RNNDH 294
L+KAI PG +IG IQ +A+ + VVR++ GHGIGR FH +P + +Y + +
Sbjct: 129 LYKAIEEAKPGNRIGEIGAAIQKYAEAKGFSVVREYCGHGIGRKFHEEPQIPNYGKKFTN 188
Query: 295 GRMVLNQTFTI 305
R+ FTI
Sbjct: 189 VRLKEGMVFTI 199
>gnl|CDD|183434 PRK12318, PRK12318, methionine aminopeptidase; Provisional.
Length = 291
Score = 191 bits (487), Expect = 3e-59
Identities = 77/202 (38%), Positives = 128/202 (63%), Gaps = 2/202 (0%)
Query: 110 VHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGG- 168
+ + IE +R + ++ A++L+ K G+TT+E+D+ ++ + A P+PL YG
Sbjct: 43 IKTPEQIEKIRKACQVTARILDALCEAAKEGVTTNELDELSRELHKEYNAIPAPLNYGSP 102
Query: 169 -FPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARN 227
FPK++CTS+NE ICHGIP+ L++GD +NIDV+ ++GY+GD S G+V + +
Sbjct: 103 PFPKTICTSLNEVICHGIPNDIPLKNGDIMNIDVSCIVDGYYGDCSRMVMIGEVSEIKKK 162
Query: 228 LVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVL 287
+ + + +CL+ AI++ PG+ +IG+ I++ AD+Y + VV QFVGHG+G FH +P V
Sbjct: 163 VCQASLECLNAAIAILKPGIPLYEIGEVIENCADKYGFSVVDQFVGHGVGIKFHENPYVP 222
Query: 288 HYRNNDHGRMVLNQTFTIGNII 309
H+RN+ + FTI +I
Sbjct: 223 HHRNSSKIPLAPGMIFTIEPMI 244
>gnl|CDD|215993 pfam00557, Peptidase_M24, Metallopeptidase family M24. This family
contains metallopeptidases. It also contains
non-peptidase homologues such as the N terminal domain
of Spt16 which is a histone H3-H4 binding module.
Length = 208
Score = 171 bits (435), Expect = 2e-52
Identities = 57/191 (29%), Positives = 83/191 (43%), Gaps = 8/191 (4%)
Query: 117 ECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQ-MIIDNGAYPSPLGYGGFPKSVCT 175
E MR + R+AA LE A ++PG+T E+ + + GA FP V +
Sbjct: 1 ELMRKAARIAAAALEAALAAIRPGVTERELAAELEAAFLARGGA-----RGPAFPPIVAS 55
Query: 176 SVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDC 235
N + H IP R L+DGD + IDV +GYH D + TF G E R L + +
Sbjct: 56 GPNAAVPHYIPSDRVLKDGDLVLIDVGAEYDGYHSDITRTFVVGKPTPEQRELYEAVLEA 115
Query: 236 LHKAISVCAPGMEYKKIGKTIQDHADRYNYG-VVRQFVGHGIGRVFHADPVVLHYRNNDH 294
AI+ PG+ + ++ + YG +GHGIG H + + ND
Sbjct: 116 QEAAIAAVKPGVTGGDVDAAAREVLEEGGYGEYFPHGLGHGIGLDVHDEGPYISRGGNDR 175
Query: 295 GRMVLNQTFTI 305
+ FTI
Sbjct: 176 -VLEPGMVFTI 185
>gnl|CDD|171806 PRK12897, PRK12897, methionine aminopeptidase; Reviewed.
Length = 248
Score = 137 bits (346), Expect = 8e-39
Identities = 65/180 (36%), Positives = 94/180 (52%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
I+ M SG+L A ++KPGITT EI+ V + +GA GY G+P ++C
Sbjct: 10 IDLMHESGKLLASCHREIAKIMKPGITTKEINTFVEAYLEKHGATSEQKGYNGYPYAICA 69
Query: 176 SVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDC 235
SVN+ +CH P L +GD + ID+ V LNG D++ T+ G V DEA L+ V ++
Sbjct: 70 SVNDEMCHAFPADVPLTEGDIVTIDMVVNLNGGLSDSAWTYRVGKVSDEAEKLLLVAENA 129
Query: 236 LHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHG 295
L+K I G IG I+ + + V R F GHGIG+ H +P + H+ G
Sbjct: 130 LYKGIDQAVIGNRVGDIGYAIESYVANEGFSVARDFTGHGIGKEIHEEPAIFHFGKQGQG 189
>gnl|CDD|238514 cd01066, APP_MetAP, A family including aminopeptidase P,
aminopeptidase M, and prolidase. Also known as
metallopeptidase family M24. This family of enzymes is
able to cleave amido-, imido- and amidino-containing
bonds. Members exibit relatively narrow substrate
specificity compared to other metallo-aminopeptidases,
suggesting they play roles in regulation of biological
processes rather than general protein degradation.
Length = 207
Score = 129 bits (327), Expect = 2e-36
Identities = 46/193 (23%), Positives = 82/193 (42%), Gaps = 14/193 (7%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
I +R + +A + A ++PG+T E+ A+ Q + G YP+
Sbjct: 1 IARLRKAAEIAEAAMAAAAEAIRPGVTEAEVAAAIEQALRAAGGYPAG--------PTIV 52
Query: 176 SVNE--CICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTK 233
+ H PD R L++GD + +D+ +GYH D + TF G+ DE R L + +
Sbjct: 53 GSGARTALPHYRPDDRRLQEGDLVLVDLGGVYDGYHADLTRTFVIGEPSDEQRELYEAVR 112
Query: 234 DCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQ-FVGHGIGRVFHADPVVLHYRNN 292
+ A++ PG+ +++ ++ + + G GHGIG H PV +
Sbjct: 113 EAQEAALAALRPGVTAEEVDAAAREVLEEHGLGPNFGHRTGHGIGLEIHEPPV---LKAG 169
Query: 293 DHGRMVLNQTFTI 305
D + F +
Sbjct: 170 DDTVLEPGMVFAV 182
>gnl|CDD|181534 PRK08671, PRK08671, methionine aminopeptidase; Provisional.
Length = 291
Score = 114 bits (288), Expect = 8e-30
Identities = 55/194 (28%), Positives = 96/194 (49%), Gaps = 15/194 (7%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
+E +G++A++V E A L+KPG ++ + V I + GA P+ FP
Sbjct: 2 LEKYLEAGKIASKVREEAAKLIKPGAKLLDVAEFVENRIRELGAKPA------FP--CNI 53
Query: 176 SVNECICHGIP---DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVT 232
S+NE H P D R +GD + +D+ +++GY DT+ T D+ + +LV+ +
Sbjct: 54 SINEVAAHYTPSPGDERVFPEGDVVKLDLGAHVDGYIADTAVTV---DLGGKYEDLVEAS 110
Query: 233 KDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGR-VFHADPVVLHYRN 291
++ L AI V PG+ +IG+ I++ Y + +R GHG+ R HA P + +Y
Sbjct: 111 EEALEAAIEVVRPGVSVGEIGRVIEETIRSYGFKPIRNLTGHGLERYELHAGPSIPNYDE 170
Query: 292 NDHGRMVLNQTFTI 305
++ + I
Sbjct: 171 GGGVKLEEGDVYAI 184
>gnl|CDD|180918 PRK07281, PRK07281, methionine aminopeptidase; Reviewed.
Length = 286
Score = 105 bits (264), Expect = 1e-26
Identities = 56/205 (27%), Positives = 92/205 (44%), Gaps = 31/205 (15%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGG----FPK 171
IE M +G A + L+KPG+ E+++ V + + P +G G +P
Sbjct: 10 IEAMDRAGDFLASIHIGLRDLIKPGVDMWEVEEYVRRRCKEENVLPLQIGVDGAMMDYPY 69
Query: 172 SVCTSVNECICHGIPDSRALEDGDTINIDVTV------------------------YLNG 207
+ C +N+ + H P L++GD + +D+ + Y
Sbjct: 70 ATCCGLNDEVAHAFPRHYILKEGDLLKVDMVLSEPLDKSIVDVSKLNFDNVEQMKKYTES 129
Query: 208 YHG---DTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYN 264
Y G D+ + G DE +NL+ VTK+ +++ I G IG IQ++A+
Sbjct: 130 YRGGLADSCWAYAVGTPSDEVKNLMDVTKEAMYRGIEQAVVGNRIGDIGAAIQEYAESRG 189
Query: 265 YGVVRQFVGHGIGRVFHADPVVLHY 289
YGVVR VGHG+G H +P+V +Y
Sbjct: 190 YGVVRDLVGHGVGPTMHEEPMVPNY 214
>gnl|CDD|223085 COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and
metabolism].
Length = 384
Score = 107 bits (269), Expect = 1e-26
Identities = 51/199 (25%), Positives = 79/199 (39%), Gaps = 10/199 (5%)
Query: 110 VHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGF 169
+ I +R + +A LE A ++PG+T EI + + GA F
Sbjct: 154 IKSPAEIAKIRKAAEIADAALEAALEAIRPGMTEAEIAAELEYALRKGGA-----EGPSF 208
Query: 170 PKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLV 229
V + N + H P R L DGD + ID+ NGY D + TF G DE R +
Sbjct: 209 DTIVASGENAALPHYTPSDRKLRDGDLVLIDLGGVYNGYCSDITRTFPIGKPSDEQREIY 268
Query: 230 KVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVR-QFVGHGIGRVF--HADPVV 286
+ + AI+ PG+ ++ + ++ YG+ GHG+G V H P
Sbjct: 269 EAVLEAQEAAIAAIRPGVTGGEVDAAARQVLEKAGYGLYFLHGTGHGVGFVLDVHEHPQY 328
Query: 287 LHYRNNDHGRMVLNQTFTI 305
L + F+I
Sbjct: 329 L--SPGSDTTLEPGMVFSI 345
>gnl|CDD|238521 cd01088, MetAP2, Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides.
Length = 291
Score = 105 bits (265), Expect = 1e-26
Identities = 57/194 (29%), Positives = 98/194 (50%), Gaps = 15/194 (7%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
+E R +G + QV +YA +L+KPG+T EI + V I + GA P FP ++
Sbjct: 1 LEKYREAGEIHRQVRKYAQSLIKPGMTLLEIAEFVENRIRELGAGP------AFPVNL-- 52
Query: 176 SVNECICHGIP---DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVT 232
S+NEC H P D L++GD + +D +++GY D++ T D D + +L++
Sbjct: 53 SINECAAHYTPNAGDDTVLKEGDVVKLDFGAHVDGYIADSAFTV---DFDPKYDDLLEAA 109
Query: 233 KDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGR-VFHADPVVLHYRN 291
K+ L+ AI P + +IG+ I++ + Y + +R GH I R HA + + +
Sbjct: 110 KEALNAAIKEAGPDVRLGEIGEAIEEVIESYGFKPIRNLTGHSIERYRLHAGKSIPNVKG 169
Query: 292 NDHGRMVLNQTFTI 305
+ R+ + I
Sbjct: 170 GEGTRLEEGDVYAI 183
>gnl|CDD|238525 cd01092, APP-like, Similar to Prolidase and Aminopeptidase P. The
members of this subfamily presumably catalyse hydrolysis
of Xaa-Pro dipeptides and/or release of any N-terminal
amino acid, including proline, that is linked with
proline.
Length = 208
Score = 101 bits (254), Expect = 1e-25
Identities = 54/194 (27%), Positives = 87/194 (44%), Gaps = 15/194 (7%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAY-PSPLGYGGFPKSVC 174
IE +R + R+A + E +KPG+T E+ + + GA PS F V
Sbjct: 1 IELLRKAARIADKAFEELLEFIKPGMTEREVAAELEYFMRKLGAEGPS------FDTIVA 54
Query: 175 TSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKD 234
+ N + HG+P R +E+GD + ID +GY D + T G+ DE + + ++ +
Sbjct: 55 SGPNSALPHGVPSDRKIEEGDLVLIDFGAIYDGYCSDITRTVAVGEPSDELKEIYEIVLE 114
Query: 235 CLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFV---GHGIGRVFHADPVVLHYRN 291
AI PG+ K++ K +D + YG F+ GHG+G H P +
Sbjct: 115 AQQAAIKAVKPGVTAKEVDKAARDVIEEAGYG--EYFIHRTGHGVGLEVHEAPYISP--G 170
Query: 292 NDHGRMVLNQTFTI 305
+D + FTI
Sbjct: 171 SD-DVLEEGMVFTI 183
>gnl|CDD|129592 TIGR00501, met_pdase_II, methionine aminopeptidase, type II.
Methionine aminopeptidase (map) is a cobalt-binding
enzyme. Bacterial and organellar examples (type I)
differ from eukaroytic and archaeal (type II) examples
in lacking a region of approximately 60 amino acids
between the 4th and 5th cobalt-binding ligands. The role
of this protein in general is to produce the mature
amino end of cytosolic proteins by removing the
N-terminal methionine. This model describes type II,
among which the eukaryotic members typically have an
N-terminal extension not present in archaeal members. It
can act cotranslationally. The enzyme from rat has been
shown to associate with translation initiation factor 2
(IF-2) and may have a role in translational regulation
[Protein fate, Protein modification and repair].
Length = 295
Score = 100 bits (250), Expect = 2e-24
Identities = 54/198 (27%), Positives = 90/198 (45%), Gaps = 15/198 (7%)
Query: 112 DEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPK 171
D + E +G++ ++V A + PG+ E+ + V I + GA P FP
Sbjct: 1 DIERAEKWIEAGKIHSKVRREAADRIVPGVKLLEVAEFVENRIRELGAEP------AFPC 54
Query: 172 SVCTSVNECICHGIP---DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNL 228
++ S+NEC H P D +DGD + +D+ +++GY DT+ T D+ D+ NL
Sbjct: 55 NI--SINECAAHFTPKAGDKTVFKDGDVVKLDLGAHVDGYIADTAITV---DLGDQYDNL 109
Query: 229 VKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGR-VFHADPVVL 287
VK KD L+ AI G+ +IGK IQ+ + Y + GH + H +
Sbjct: 110 VKAAKDALYTAIKEIRAGVRVGEIGKAIQEVIESYGVKPISNLTGHSMAPYRLHGGKSIP 169
Query: 288 HYRNNDHGRMVLNQTFTI 305
+ + D ++ I
Sbjct: 170 NVKERDTTKLEEGDVVAI 187
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 60.1 bits (146), Expect = 4e-10
Identities = 52/212 (24%), Positives = 86/212 (40%), Gaps = 30/212 (14%)
Query: 113 EKGIECMRVSGRLAAQVLEYAGTLVKPGIT----TDEIDKAVHQMIIDNGAYPSPLGYG- 167
E+ + +R + + QV YA +++KPG+ + I+ ++I +G L G
Sbjct: 155 EEQYQDLRRAAEVHRQVRRYAQSVIKPGVKLIDICERIESKSRELIEADG-----LKCGW 209
Query: 168 GFPKSVCTSVNECICHGIP---DSRALEDGDTINIDVTVYLNGYHGDTSATF-FCGDVDD 223
FP S+N C H P D L D +D ++NG D + T F +
Sbjct: 210 AFPTGC--SLNHCAAHYTPNTGDKTVLTYDDVCKLDFGTHVNGRIIDCAFTVAF----NP 263
Query: 224 EARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRY-------NYGV--VRQFVGH 274
+ L++ TKD + I + IG IQ+ + Y Y + +R GH
Sbjct: 264 KYDPLLQATKDATNTGIKEAGIDVRLSDIGAAIQEVIESYEVEIKGKTYPIKSIRNLNGH 323
Query: 275 GIGR-VFHADPVVLHYRNNDHGRMVLNQTFTI 305
IG + H V + ++ RM + F I
Sbjct: 324 SIGPYIIHGGKSVPIVKGGENTRMEEGELFAI 355
>gnl|CDD|238522 cd01089, PA2G4-like, Related to aminopepdidase M, this family
contains proliferation-associated protein 2G4. Family
members have been implicated in cell cycle control.
Length = 228
Score = 51.9 bits (125), Expect = 7e-08
Identities = 41/175 (23%), Positives = 72/175 (41%), Gaps = 16/175 (9%)
Query: 120 RVSGRLAAQVLEYAGTLVKPGITTDEI----DKAVHQMIIDNGAYPSPLG-YGGFPKSVC 174
+ +G++A +VL+ +L PG ++ DK + + + Y G C
Sbjct: 5 KTAGQIANKVLKQVISLCVPGAKVVDLCEKGDKLILEEL--GKVYKKEKKLEKGIAFPTC 62
Query: 175 TSVNECICHGIP----DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDE-----A 225
SVN C+CH P + L+DGD + ID+ +++GY + T G +
Sbjct: 63 ISVNNCVCHFSPLKSDATYTLKDGDVVKIDLGCHIDGYIAVVAHTIVVGAEAETPVTGKK 122
Query: 226 RNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVF 280
+++ L A+ + PG + I + IQ Y V + H + RV
Sbjct: 123 ADVIAAAHYALEAALRLLRPGNQNSDITEAIQKVIVDYGCTPVEGVLSHQLKRVV 177
>gnl|CDD|129586 TIGR00495, crvDNA_42K, 42K curved DNA binding protein. Proteins
identified by This model have been identified in a
number of species as a nuclear (but not nucleolar)
protein with a cell cycle dependence. Various names
given to members of this family have included cell cycle
protein p38-2G4, DNA-binding protein GBP16, and
proliferation-associated protein 1. This protein is
closely related to methionine aminopeptidase, a
cobolt-binding protein [Unknown function, General].
Length = 389
Score = 48.7 bits (116), Expect = 2e-06
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 11/119 (9%)
Query: 169 FPKSVCTSVNECICHGIP----DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDE 224
FP C SVN C+ H P L++GD + ID+ +++G+ + TF G +E
Sbjct: 77 FP--TCISVNNCVGHFSPLKSDQDYILKEGDVVKIDLGCHIDGFIALVAHTFVVGVAQEE 134
Query: 225 -----ARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGR 278
+++ A+ + PG ++ + I A Y V + H + +
Sbjct: 135 PVTGRKADVIAAAHLAAEAALRLVKPGNTNTQVTEAINKVAHSYGCTPVEGMLSHQLKQ 193
>gnl|CDD|238520 cd01087, Prolidase, Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro
dipeptidase, X-Pro dipeptidase, proline dipeptidase.,
imidodipeptidase, peptidase D, gamma-peptidase.
Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on
aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Length = 243
Score = 44.9 bits (107), Expect = 2e-05
Identities = 39/138 (28%), Positives = 58/138 (42%), Gaps = 7/138 (5%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
IE MR + ++A+ A +PG++ E++ GA Y V
Sbjct: 1 IELMRKACDISAEAHRAAMKASRPGMSEYELEAEFEYEFRSRGARL-AYSYI-----VAA 54
Query: 176 SVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATF-FCGDVDDEARNLVKVTKD 234
N I H + + + L+DGD + ID GY D + TF G DE R L +
Sbjct: 55 GSNAAILHYVHNDQPLKDGDLVLIDAGAEYGGYASDITRTFPVNGKFTDEQRELYEAVLA 114
Query: 235 CLHKAISVCAPGMEYKKI 252
AI+ C PG+ Y+ I
Sbjct: 115 AQKAAIAACKPGVSYEDI 132
>gnl|CDD|182804 PRK10879, PRK10879, proline aminopeptidase P II; Provisional.
Length = 438
Score = 44.3 bits (105), Expect = 5e-05
Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 14/153 (9%)
Query: 108 PEVHD------EKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGA-Y 160
P VH+ + I +R +G ++A A +PG+ +++ +H +GA Y
Sbjct: 165 PWVHEMRLFKSPEEIAVLRRAGEISALAHTRAMEKCRPGMFEYQLEGEIHHEFNRHGARY 224
Query: 161 PSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATF-FCG 219
PS + V + N CI H + + DGD + ID GY GD + TF G
Sbjct: 225 PS------YNTIVGSGENGCILHYTENESEMRDGDLVLIDAGCEYKGYAGDITRTFPVNG 278
Query: 220 DVDDEARNLVKVTKDCLHKAISVCAPGMEYKKI 252
R + + + L ++ + PG +++
Sbjct: 279 KFTPAQREIYDIVLESLETSLRLYRPGTSIREV 311
>gnl|CDD|173039 PRK14575, PRK14575, putative peptidase; Provisional.
Length = 406
Score = 40.5 bits (94), Expect = 9e-04
Identities = 38/167 (22%), Positives = 69/167 (41%), Gaps = 27/167 (16%)
Query: 124 RLAAQVLEY----AGTLVKPGITTDEIDKAVHQMIIDNGA------YPSPLGYGGFPKSV 173
R +A++ EY A L++ G T+ E+ A ++ + +G PK +
Sbjct: 188 RKSAEITEYGITEASKLIRVGCTSAELTAAYKAAVMSKSETHFSRFHLISVGADFSPKLI 247
Query: 174 CTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTK 233
++ C GD I D V ++GY D + TF G+ + R + + +
Sbjct: 248 PSNTKAC------------SGDLIKFDCGVDVDGYGADIARTFVVGEPPEITRKIYQTIR 295
Query: 234 DCLHKAISVCAPGMEYKKIGKTIQDHADRY---NYGVVRQFVGHGIG 277
+S+ APG++ K + + + + NY R +GHG G
Sbjct: 296 TGHEHMLSMVAPGVKMKDVFDSTMEVIKKSGLPNYN--RGHLGHGNG 340
>gnl|CDD|185095 PRK15173, PRK15173, peptidase; Provisional.
Length = 323
Score = 40.1 bits (93), Expect = 0.001
Identities = 38/167 (22%), Positives = 69/167 (41%), Gaps = 27/167 (16%)
Query: 124 RLAAQVLEY----AGTLVKPGITTDEIDKAVHQMIIDNGA------YPSPLGYGGFPKSV 173
R +A++ EY A L++ G T+ E+ A ++ + +G PK +
Sbjct: 105 RKSAEITEYGITEASKLIRVGCTSAELTAAYKAAVMSKSETHFSRFHLISVGADFSPKLI 164
Query: 174 CTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTK 233
++ C GD I D V ++GY D + TF G+ + R + + +
Sbjct: 165 PSNTKAC------------SGDLIKFDCGVDVDGYGADIARTFVVGEPPEITRKIYQTIR 212
Query: 234 DCLHKAISVCAPGMEYKKIGKTIQDHADRY---NYGVVRQFVGHGIG 277
+S+ APG++ K + + + + NY R +GHG G
Sbjct: 213 TGHEHMLSMVAPGVKMKDVFDSTMEVIKKSGLPNYN--RGHLGHGNG 257
>gnl|CDD|182080 PRK09795, PRK09795, aminopeptidase; Provisional.
Length = 361
Score = 39.5 bits (92), Expect = 0.002
Identities = 38/175 (21%), Positives = 67/175 (38%), Gaps = 11/175 (6%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
+E +R++ +A + E+ ++ G++ EI + + GA + F V +
Sbjct: 133 VEKIRLACGIADRGAEHIRRFIQAGMSEREIAAELEWFMRQQGAEKA-----SFDTIVAS 187
Query: 176 SVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCG--DVDDEARNLVKVTK 233
+ HG + + G+ + +D GY D + T V E+ L V +
Sbjct: 188 GWRGALPHGKASDKIVAAGEFVTLDFGALYQGYCSDMTRTLLVNGEGVSAESHPLFNVYQ 247
Query: 234 DCLH---KAISVCAPGMEYKKIGKTIQDHADRYNYG-VVRQFVGHGIGRVFHADP 284
L AIS PG+ +++ + YG GH IG H DP
Sbjct: 248 IVLQAQLAAISAIRPGVRCQQVDDAARRVITEAGYGDYFGHNTGHAIGIEVHEDP 302
>gnl|CDD|173040 PRK14576, PRK14576, putative endopeptidase; Provisional.
Length = 405
Score = 38.1 bits (88), Expect = 0.005
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 9/98 (9%)
Query: 185 IPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCA 244
I D+ + GD I D + + GY D + TF G+ D + + + +S+ A
Sbjct: 246 IADTTPAKVGDLIKFDCGIDVAGYGADLARTFVLGEPDKLTQQIYDTIRTGHEHMLSMVA 305
Query: 245 PGMEYKKIGKTIQDHADR-----YNYGVVRQFVGHGIG 277
PG++ K + + YN G +GHG G
Sbjct: 306 PGVKLKAVFDSTMAVIKTSGLPHYNRG----HLGHGDG 339
>gnl|CDD|238523 cd01090, Creatinase, Creatine amidinohydrolase. E.C.3.5.3.3.
Hydrolyzes creatine to sarcosine and urea.
Length = 228
Score = 32.5 bits (74), Expect = 0.20
Identities = 20/100 (20%), Positives = 40/100 (40%), Gaps = 1/100 (1%)
Query: 183 HGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISV 242
H +R ++ GD ++++ + GY+ T F +V D + + + + +
Sbjct: 69 HNPVTNRKVQRGDILSLNCFPMIAGYYTALERTLFLDEVSDAHLKIWEANVAVHERGLEL 128
Query: 243 CAPGMEYKKIGKTIQDHADRYNYGVVRQF-VGHGIGRVFH 281
PG K I + + ++ R F GH G + H
Sbjct: 129 IKPGARCKDIAAELNEMYREHDLLRYRTFGYGHSFGVLSH 168
>gnl|CDD|221891 pfam13007, LZ_Tnp_IS66, Transposase C of IS166 homeodomain. This
is a leucine-zipper-like or homeodomain-like region of
transposase TnpC of insertion element IS66.
Length = 77
Score = 28.4 bits (64), Expect = 0.97
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Query: 65 DAEPNRRRKRLRPGKVSPHRPVPDHIPR 92
E R RPG+ +P+P+H+PR
Sbjct: 51 APEQPAAPPRRRPGR----KPLPEHLPR 74
>gnl|CDD|239764 cd04097, mtEFG1_C, mtEFG1_C: C-terminus of mitochondrial
Elongation factor G1 (mtEFG1)-like proteins found in
eukaryotes. Eukaryotic cells harbor 2 protein
synthesis systems: one localized in the cytoplasm, the
other in the mitochondria. Most factors regulating
mitochondrial protein synthesis are encoded by nuclear
genes, translated in the cytoplasm, and then
transported to the mitochondria. The eukaryotic system
of elongation factor (EF) components is more complex
than that in prokaryotes, with both cytoplasmic and
mitochondrial elongation factors and multiple isoforms
being expressed in certain species. Eukaryotic EF-2
operates in the cytosolic protein synthesis machinery
of eukaryotes, EF-Gs in protein synthesis in bacteria.
Eukaryotic mtEFG1 proteins show significant homology to
bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired
mitochondrial protein synthesis, respiratory defects
and a tendency to lose mitochondrial DNA. There are two
forms of mtEFG present in mammals (designated mtEFG1s
and mtEFG2s) mtEFG2s are not present in this group.
Length = 78
Score = 28.1 bits (63), Expect = 1.6
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 7/28 (25%)
Query: 29 PLNQLFGYNS-------GKNQVSMQLSR 49
PLN +FGY++ GK + SM+ SR
Sbjct: 46 PLNDMFGYSTELRSMTQGKGEFSMEFSR 73
>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton].
Length = 444
Score = 30.1 bits (68), Expect = 1.9
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 150 VHQMIIDNGAYPSPLGYGG--FPKSVCTSV 177
V ++IDNG+ + G+ G P +V S+
Sbjct: 6 VPTIVIDNGSGTTKAGFAGNDTPTTVFPSI 35
>gnl|CDD|180800 PRK07030, PRK07030, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 466
Score = 29.3 bits (66), Expect = 2.8
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 206 NGYHGDTSATFFCGDVDDEARNLVKVT-KDCLHKAISVCAPGMEYKKIGKTIQDHADR 262
N YHG+T A GDV L T K L I V +P + G + ++H+ R
Sbjct: 147 NSYHGETLAAMSVGDV-----ALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRR 199
>gnl|CDD|234956 PRK01490, tig, trigger factor; Provisional.
Length = 435
Score = 28.6 bits (65), Expect = 4.3
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 185 IPDSRALEDGDTINIDVTVYLNG 207
+P R E+GD + ID ++G
Sbjct: 152 VPVERPAENGDRVTIDFVGSIDG 174
>gnl|CDD|236939 PRK11623, pcnB, poly(A) polymerase I; Provisional.
Length = 472
Score = 28.9 bits (65), Expect = 4.4
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 63 NLDAEPNRRRKRLRPGKVSPHRP 85
LD +P RR+ RP K +P R
Sbjct: 447 ELDDDPAPRRRTRRPRKRAPRRE 469
>gnl|CDD|227274 COG4938, COG4938, Uncharacterized conserved protein [Function
unknown].
Length = 374
Score = 28.7 bits (64), Expect = 4.5
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Query: 7 SLQLQPRLLSSFVGNRFIHSTQPLNQLFGYNS-GKNQVSMQLSRTFSGLADLLFNRRNLD 65
L L + ++ + I PL G NS GK+ L +SGL R
Sbjct: 2 ILSLSLKNFKPYINGKIILK--PLTVFIGPNSSGKSTTIQSLYLIYSGLTRSYALPRLAC 59
Query: 66 AEPNRRRK 73
AE +R +K
Sbjct: 60 AEYSRNKK 67
>gnl|CDD|232831 TIGR00115, tig, trigger factor. Trigger factor is a
ribosome-associated molecular chaperone and is the first
chaperone to interact with nascent polypeptide. Trigger
factor can bind at the same time as the signal
recognition particle (SRP), but is excluded by the SRP
receptor (FtsY). The central domain of trigger factor
has peptidyl-prolyl cis/trans isomerase activity. This
protein is found in a single copy in virtually every
bacterial genome [Protein fate, Protein folding and
stabilization].
Length = 408
Score = 28.7 bits (65), Expect = 4.7
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 187 DSRALEDGDTINIDVTVYLNG 207
+ RA E GD + ID +++G
Sbjct: 143 ERRAAEKGDRVTIDFEGFIDG 163
>gnl|CDD|218956 pfam06248, Zw10, Centromere/kinetochore Zw10. Zw10 and rough deal
proteins are both required for correct metaphase
check-pointing during mitosis. These proteins bind to
the centromere/kinetochore.
Length = 593
Score = 28.5 bits (64), Expect = 5.3
Identities = 25/117 (21%), Positives = 41/117 (35%), Gaps = 30/117 (25%)
Query: 177 VNECICHGIPDS------------------RALEDGDTINIDVTVYLNGYHGDTSATF-- 216
+ +C+ IP++ AL++ + ++ D T L Y D + F
Sbjct: 323 IKDCLVKSIPETSSELQEYSEVIEDTEEFEAALKEMNFLDGDATD-LLKYARDVNTHFAN 381
Query: 217 -FCGDVDDEARNL--------VKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYN 264
C DV ARNL V VT D + + E K K+ + +
Sbjct: 382 KKCQDVLVTARNLMTSDLHNTVLVTPDSKVVKPKLPSSKAETKAQAKSERLWLENEK 438
>gnl|CDD|235843 PRK06635, PRK06635, aspartate kinase; Reviewed.
Length = 404
Score = 28.2 bits (64), Expect = 6.2
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 10/56 (17%)
Query: 184 GIPD--------SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVD-DEARNLVK 230
G+PD AL + + IN+D+ V G T TF D ++A L++
Sbjct: 269 GVPDKPGIAAQIFGALAEAN-INVDMIVQNVSEDGKTDITFTVPRDDLEKALELLE 323
>gnl|CDD|223490 COG0413, PanB, Ketopantoate hydroxymethyltransferase [Coenzyme
metabolism].
Length = 268
Score = 27.9 bits (63), Expect = 6.5
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 112 DEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEI 146
D+ G++ + V L VL Y TL +T +++
Sbjct: 32 DQAGVDVLLVGDSLGMVVLGYDSTL---PVTLEDM 63
>gnl|CDD|237726 PRK14488, PRK14488, cbb3-type cytochrome c oxidase subunit I;
Provisional.
Length = 473
Score = 28.3 bits (64), Expect = 7.0
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 257 QDHADRYNYGVVRQFV 272
+ YNY VVRQF
Sbjct: 2 ANSPTEYNYKVVRQFA 17
>gnl|CDD|150427 pfam09752, DUF2048, Uncharacterized conserved protein (DUF2048).
The proteins in this family are conserved from plants
to vertebrates. The function is unknown.
Length = 337
Score = 27.7 bits (62), Expect = 7.6
Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 52 SGLADLLFNRRNLDAEPNRRR-KRLRPGKVSPHRPVPDHIP 91
S A R L AE R R + L P K SP RPV H+
Sbjct: 60 SPCATYFPGR--LPAESRRARFQWLLPKKWSPKRPVCVHLA 98
>gnl|CDD|188463 TIGR03948, butyr_acet_CoA, butyryl-CoA:acetate CoA-transferase.
This enzyme represents one of at least two mechanisms
for reclaiming CoA from butyryl-CoA at the end of
butyrate biosynthesis (an important process performed by
some colonic bacteria), namely transfer of CoA to
acetate. An alternate mechanism transfers the butyrate
onto inorganic phosphate, after which butyrate kinase
transfers the phosphate onto ADP, creating ATP [Energy
metabolism, Fermentation].
Length = 445
Score = 27.9 bits (62), Expect = 7.9
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Query: 145 EIDKAVHQMIID---NGAYPSPLGYGGFPKSVCTSVNE 179
E+DKAV ++I++ NGA LG GG P +V + + E
Sbjct: 197 EVDKAVAKLIVEEIPNGACLQ-LGIGGMPNAVGSLIAE 233
>gnl|CDD|216724 pfam01824, MatK_N, MatK/TrnK amino terminal region. The function
of this region is unknown.
Length = 331
Score = 27.8 bits (62), Expect = 7.9
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 11/72 (15%)
Query: 21 NRFIHSTQPLNQ--LFGYNSGKNQVSMQLSRTFSGLADLLFNRRNLDAEPNRRRKR---L 75
N FI S NQ G+N KN S +S F+ + ++ F+ R + + + + L
Sbjct: 68 NHFIISVNDSNQNPFLGHN--KNLYSQMISEGFAVIVEIPFSLRLISSLEGKEIVKSHNL 125
Query: 76 RPGKVSPHRPVP 87
R S H P
Sbjct: 126 R----SIHSIFP 133
>gnl|CDD|217174 pfam02668, TauD, Taurine catabolism dioxygenase TauD, TfdA family.
This family consists of taurine catabolism dioxygenases
of the TauD, TfdA family. TauD from E. coli is a
alpha-ketoglutarate-dependent taurine dioxygenase. This
enzyme catalyzes the oxygenolytic release of sulfite
from taurine. TfdA from Burkholderia sp. is a
2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate
dioxygenase. TfdA from Alcaligenes eutrophus JMP134 is a
2,4-dichlorophenoxyacetate monooxygenase. Also included
are gamma-Butyrobetaine hydroxylase enzymes
EC:1.14.11.1.
Length = 215
Score = 27.3 bits (61), Expect = 9.3
Identities = 18/80 (22%), Positives = 24/80 (30%), Gaps = 13/80 (16%)
Query: 1 MVGGACSLQLQPRLLSSFVGNRFIHSTQPLNQLFGY-NSGKNQVSMQLSRTFSGLADLLF 59
V G L P + VG S L+ L + + + G DL+
Sbjct: 136 PVTGRKVLFNNPHFTTRIVGLPLAESQALLDALDAHLTDPEFTYRHKWQP---G--DLVI 190
Query: 60 --NRRNL-----DAEPNRRR 72
NRR L RR
Sbjct: 191 WDNRRVLHGRTAFDPTGRRH 210
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.140 0.426
Gapped
Lambda K H
0.267 0.0732 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,841,523
Number of extensions: 1637219
Number of successful extensions: 1407
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1371
Number of HSP's successfully gapped: 46
Length of query: 325
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 228
Effective length of database: 6,635,264
Effective search space: 1512840192
Effective search space used: 1512840192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.5 bits)