BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020522
(325 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 30 YNFLLKLGEMLRVDNGEGFCFISDGENGVEDALEALMCRAEIRICAQTVYERMK 83
YN + + R +NGE FCF+ + GV D L C + + +T+ E K
Sbjct: 335 YNVSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRC-SHVSFPGETIMEEAK 387
>pdb|3C8V|A Chain A, Crystal Structure Of Putative Acetyltransferase
(Yp_390128.1) From Desulfovibrio Desulfuricans G20 At
2.28 A Resolution
pdb|3C8V|B Chain B, Crystal Structure Of Putative Acetyltransferase
(Yp_390128.1) From Desulfovibrio Desulfuricans G20 At
2.28 A Resolution
pdb|3C8V|C Chain C, Crystal Structure Of Putative Acetyltransferase
(Yp_390128.1) From Desulfovibrio Desulfuricans G20 At
2.28 A Resolution
pdb|3C8V|D Chain D, Crystal Structure Of Putative Acetyltransferase
(Yp_390128.1) From Desulfovibrio Desulfuricans G20 At
2.28 A Resolution
Length = 496
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%)
Query: 193 QVMHVLENGISRVSVDIKKQCCDCGSWQLSGIPCAHASKCILNVGREVDDFV 244
Q+ +LE I RV+V+++ Q D G + P H SK G DD V
Sbjct: 22 QLELLLERIIDRVNVNLRHQKFDVGDYVRRQTPHLHYSKFYAFYGLSADDPV 73
>pdb|3MB8|A Chain A, Crystal Structure Of Purine Nucleoside Phosphorylase From
Toxoplasma Gondii In Complex With Immucillin-H
pdb|3MB8|B Chain B, Crystal Structure Of Purine Nucleoside Phosphorylase From
Toxoplasma Gondii In Complex With Immucillin-H
Length = 279
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 179 IEAAREMNVEATEGQVM---HVLENGISRVSVDIKKQCCDCGSWQLSGI 224
++AA+E+ +EA G + + +NGI +++ +CCD ++SG+
Sbjct: 144 MDAAKELGIEAASGIGVTQDYFYQNGILPSKLEMYSKCCDVIDMEMSGV 192
>pdb|2X6Q|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6Q|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6R|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
pdb|2X6R|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
Length = 416
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 154 KFFFWMHEYFAQSITRRMEAIVNNAIEAAREMNVEATEGQVMHVLENGISRVSVDIKKQC 213
++ F + EY + R I+ +I+ E NVE + +++ +LE R VD +K
Sbjct: 178 RYIFHLPEYVQPELDRNKAVIMPPSIDPLSEKNVELKQTEILRILE----RFDVDPEKPI 233
Query: 214 C 214
Sbjct: 234 I 234
>pdb|2XMP|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horishiki In Complex With Udp
pdb|2XMP|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horishiki In Complex With Udp
pdb|2XA2|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA2|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA9|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA9|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
Length = 416
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 154 KFFFWMHEYFAQSITRRMEAIVNNAIEAAREMNVEATEGQVMHVLENGISRVSVDIKKQC 213
++ F + EY + R I+ +I+ E NVE + +++ +LE R VD +K
Sbjct: 178 RYIFHLPEYVQPELDRNKAVIMPPSIDPLSEKNVELKQTEILRILE----RFDVDPEKPI 233
Query: 214 C 214
Sbjct: 234 I 234
>pdb|2XA1|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshii (Seleno Derivative)
pdb|2XA1|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshii (Seleno Derivative)
Length = 416
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 154 KFFFWMHEYFAQSITRRMEAIVNNAIEAAREMNVEATEGQVMHVLENGISRVSVDIKKQC 213
++ F + EY + R I +I+ E NVE + +++ +LE R VD +K
Sbjct: 178 RYIFHLPEYVQPELDRNKAVIXPPSIDPLSEKNVELKQTEILRILE----RFDVDPEKPI 233
Query: 214 C 214
Sbjct: 234 I 234
>pdb|3DMQ|A Chain A, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT
Recycles Rna Polymerase During Transcription
pdb|3DMQ|B Chain B, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT
Recycles Rna Polymerase During Transcription
Length = 968
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 9 ANDGIWPVAVYEVEEESNSTWYNF 32
A D ++P +Y+ E N+TW+NF
Sbjct: 464 ARDXLYPERIYQEFEGDNATWWNF 487
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.134 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,662,595
Number of Sequences: 62578
Number of extensions: 386485
Number of successful extensions: 755
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 749
Number of HSP's gapped (non-prelim): 8
length of query: 325
length of database: 14,973,337
effective HSP length: 99
effective length of query: 226
effective length of database: 8,778,115
effective search space: 1983853990
effective search space used: 1983853990
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)