BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020522
         (325 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q38710|TPSDV_ABIGR Abietadiene synthase, chloroplastic OS=Abies grandis GN=AS PE=1
           SV=1
          Length = 868

 Score = 33.1 bits (74), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 30  YNFLLKLGEMLRVDNGEGFCFISDGENGVEDALEALMCRAEIRICAQTVYERMK 83
           YN    + +  R +NGE FCF+   + GV D L    C + +    +T+ E  K
Sbjct: 418 YNVSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRC-SHVSFPGETIMEEAK 470


>sp|Q50EK2|TPSD1_PINTA Levopimaradiene synthase, chloroplastic OS=Pinus taeda GN=LPS PE=1
           SV=1
          Length = 850

 Score = 32.7 bits (73), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 30  YNFLLKLGEMLRVDNGEGFCFISDGENGVEDALEALMCRAEIRICAQTVYERMK 83
           YN    + +  R +NGE FCF+   + GV D L    C + +    +T+ E  K
Sbjct: 399 YNVSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRC-SHVAFPGETIMEEAK 451


>sp|Q675L4|TPSD1_PICAB Levopimaradiene synthase, chloroplastic OS=Picea abies GN=TPS-LAS
           PE=2 SV=1
          Length = 859

 Score = 32.7 bits (73), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 30  YNFLLKLGEMLRVDNGEGFCFISDGENGVEDALEALMCRAEIRICAQTVYERMKA 84
           YN    + +  R +NGE FCF+   + GV D L    C + +    +T+ E  K 
Sbjct: 408 YNVSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRC-SHVAFPGETIMEEAKT 461


>sp|P29378|NHA2_RHORH Low-molecular weight cobalt-containing nitrile hydratase subunit
           alpha OS=Rhodococcus rhodochrous PE=1 SV=3
          Length = 207

 Score = 32.3 bits (72), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 10/82 (12%)

Query: 146 HVTNKMGKKFFF--WMHEYFAQSITRRMEAIVNNAIEAAREMNVEATEGQVMHVLENGIS 203
            V  ++G K     W+   F Q +       + +A  A REM V   +G+ M VLEN   
Sbjct: 50  EVGPQLGAKIVARAWVDPEFKQRL-------LTDATSACREMGVGGMQGEEMVVLEN-TG 101

Query: 204 RVSVDIKKQCCDCGSWQLSGIP 225
            V   +    C C  W + G+P
Sbjct: 102 TVHNMVVCTLCSCYPWPVLGLP 123


>sp|Q675L5|TPSD2_PICAB Isopimaradiene synthase, chloroplastic OS=Picea abies GN=TPS-ISO
           PE=1 SV=2
          Length = 867

 Score = 31.6 bits (70), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 30  YNFLLKLGEMLRVDNGEGFCFISDGENGVEDALEALMCRAEIRICAQTVYERMK 83
           YN    + +  R +NGE FCF+   + GV D L    C + +    +T+ +  K
Sbjct: 416 YNVSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRC-SHVAFPGETIMQEAK 468


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.134    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,105,582
Number of Sequences: 539616
Number of extensions: 4739770
Number of successful extensions: 9635
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 9635
Number of HSP's gapped (non-prelim): 6
length of query: 325
length of database: 191,569,459
effective HSP length: 118
effective length of query: 207
effective length of database: 127,894,771
effective search space: 26474217597
effective search space used: 26474217597
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)