Query 020523
Match_columns 325
No_of_seqs 238 out of 1820
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 04:15:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020523.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020523hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ewk_A Sensor protein; PAS dom 100.0 2.3E-29 7.7E-34 203.9 23.0 190 31-324 2-207 (227)
2 2gj3_A Nitrogen fixation regul 99.8 1.5E-18 5.2E-23 125.4 16.3 117 17-137 4-120 (120)
3 4f3l_A Mclock, circadian locom 99.8 1.1E-17 3.7E-22 144.0 16.1 65 17-84 85-149 (361)
4 4hia_A LOV protein; PAS, HTH, 99.8 2.4E-17 8.1E-22 127.4 16.2 127 15-142 4-130 (176)
5 3f1p_B ARYL hydrocarbon recept 99.8 1.1E-17 3.7E-22 121.0 12.0 116 19-138 3-120 (121)
6 2pr5_A Blue-light photorecepto 99.7 8.6E-17 2.9E-21 118.2 16.4 117 21-140 2-118 (132)
7 3mr0_A Sensory box histidine k 99.7 7.8E-17 2.7E-21 120.0 14.9 121 15-139 6-128 (142)
8 1n9l_A PHOT-LOV1, putative blu 99.7 1.6E-16 5.3E-21 112.7 15.7 108 27-135 2-109 (109)
9 3ue6_A Aureochrome1; PAS/LOV d 99.7 6.6E-17 2.2E-21 123.3 14.0 120 16-139 33-155 (166)
10 3t50_A Blue-light-activated hi 99.7 1.5E-16 5.2E-21 115.8 13.5 117 23-143 2-121 (128)
11 4f3l_B BMAL1B; BHLH, PAS, circ 99.7 9.2E-17 3.1E-21 139.3 13.3 70 252-324 279-359 (387)
12 3p7n_A Sensor histidine kinase 99.7 3.4E-16 1.2E-20 128.7 15.9 120 15-138 60-182 (258)
13 3rty_A Period circadian protei 99.7 2.1E-16 7E-21 133.6 14.7 70 252-324 155-239 (339)
14 3f1p_A Endothelial PAS domain- 99.7 8.6E-17 3E-21 115.4 10.6 108 27-138 8-116 (117)
15 4eet_B Phototropin-2; LOV, blu 99.7 8.6E-16 3E-20 109.1 15.4 111 23-137 2-115 (115)
16 3nja_A Probable ggdef family p 99.7 3E-16 1E-20 113.3 11.8 120 15-138 4-125 (125)
17 3mqq_A Transcriptional regulat 99.7 3.4E-16 1.2E-20 112.8 11.0 115 19-139 4-119 (120)
18 3lyx_A Sensory BOX/ggdef domai 99.7 3.2E-15 1.1E-19 107.1 15.7 119 16-138 5-123 (124)
19 2z6d_A Phototropin-2; PAS-fold 99.7 6.8E-15 2.3E-19 106.2 16.1 121 16-140 4-127 (130)
20 1d06_A Nitrogen fixation regul 99.7 2.9E-15 9.7E-20 109.6 13.7 123 5-134 4-130 (130)
21 3sw1_A Sensory box protein; li 99.6 4.3E-15 1.5E-19 112.7 14.1 124 16-143 23-149 (162)
22 3mxq_A Sensor protein; PSI2, M 99.6 1.3E-15 4.4E-20 114.0 10.7 120 15-139 19-150 (152)
23 3h9w_A Diguanylate cyclase wit 99.6 1.1E-15 3.9E-20 109.2 9.7 111 27-140 2-113 (115)
24 2vv6_A FIXL, sensor protein FI 99.6 6E-15 2E-19 106.1 13.1 111 27-143 2-116 (119)
25 3luq_A Sensor protein; PAS, hi 99.6 8.1E-15 2.8E-19 103.9 13.0 112 18-134 3-114 (114)
26 2r78_A Sensor protein; sensory 99.6 2.3E-14 7.8E-19 102.8 15.4 110 15-134 8-117 (117)
27 2wkq_A NPH1-1, RAS-related C3 99.6 1.4E-14 4.9E-19 123.6 15.3 116 22-141 15-133 (332)
28 3k3c_A Protein RV1364C/MT1410; 99.6 1.4E-14 4.9E-19 109.5 12.7 119 15-139 14-138 (158)
29 3ewk_A Sensor protein; PAS dom 99.6 5.6E-14 1.9E-18 113.2 16.2 111 18-132 111-227 (227)
30 3icy_A Sensor protein; sensory 99.6 6.7E-15 2.3E-19 105.2 8.9 114 17-134 3-118 (118)
31 3kx0_X Uncharacterized protein 99.6 2.3E-14 8E-19 111.6 12.1 122 15-142 34-161 (185)
32 1n9l_A PHOT-LOV1, putative blu 99.6 5.2E-15 1.8E-19 104.8 7.4 75 250-324 2-86 (109)
33 2v0u_A NPH1-1, LOV2; kinase, t 99.6 6.9E-14 2.4E-18 103.2 13.4 116 20-139 4-122 (146)
34 2kdk_A ARYL hydrocarbon recept 99.6 6.2E-14 2.1E-18 100.8 12.4 112 22-137 7-120 (121)
35 2gj3_A Nitrogen fixation regul 99.5 2.9E-14 9.9E-19 102.6 8.5 81 241-324 5-95 (120)
36 4dj2_A Period circadian protei 99.5 1.2E-13 4.1E-18 115.7 13.4 61 263-323 185-257 (320)
37 2r78_A Sensor protein; sensory 99.5 2E-14 6.7E-19 103.1 7.2 85 237-324 7-100 (117)
38 3mjq_A Uncharacterized protein 99.5 7.6E-14 2.6E-18 100.8 10.3 116 21-143 2-117 (126)
39 3olo_A Two-component sensor hi 99.5 3.3E-13 1.1E-17 96.2 13.5 108 16-134 11-118 (118)
40 4dj3_A Period circadian protei 99.5 7.1E-13 2.4E-17 110.8 17.2 62 262-323 182-256 (317)
41 3bwl_A Sensor protein; structu 99.5 6E-13 2.1E-17 96.3 14.5 119 6-134 6-126 (126)
42 2pr5_A Blue-light photorecepto 99.5 2.8E-14 9.6E-19 104.6 7.4 80 245-324 3-92 (132)
43 2vlg_A Sporulation kinase A; h 99.5 1.1E-14 3.6E-19 103.2 4.7 76 246-324 4-86 (111)
44 3eeh_A Putative light and redo 99.5 1.5E-13 5.2E-18 98.5 10.9 116 15-134 8-125 (125)
45 2l0w_A Potassium voltage-gated 99.5 9.9E-13 3.4E-17 95.9 15.3 115 18-136 19-138 (138)
46 3gdi_A Period circadian protei 99.5 3.7E-13 1.3E-17 112.2 13.2 62 262-323 173-246 (309)
47 1d06_A Nitrogen fixation regul 99.5 3E-14 1E-18 104.1 5.4 80 242-324 17-110 (130)
48 1byw_A Protein (human ERG pota 99.5 3.1E-12 1.1E-16 89.1 14.9 107 29-136 2-110 (110)
49 1v9y_A Heme PAS sensor protein 99.5 4E-13 1.4E-17 102.0 11.0 123 15-143 37-163 (167)
50 3f1p_B ARYL hydrocarbon recept 99.4 1.3E-13 4.5E-18 99.2 6.7 78 244-324 5-93 (121)
51 4eho_A Bacteriophytochrome, PA 99.4 8E-14 2.7E-18 128.3 6.5 116 19-139 519-634 (635)
52 3d72_A Vivid PAS protein VVD; 99.4 2.9E-12 9.9E-17 95.6 13.6 106 22-132 30-149 (149)
53 3mfx_A Sensory BOX/ggdef famil 99.4 1.6E-12 5.4E-17 94.7 11.6 113 17-136 6-125 (129)
54 3mfx_A Sensory BOX/ggdef famil 99.4 1.1E-13 3.8E-18 100.8 4.3 82 241-325 7-105 (129)
55 3fc7_A HTR-like protein, senso 99.4 5E-13 1.7E-17 96.4 7.6 108 16-134 17-125 (125)
56 4hia_A LOV protein; PAS, HTH, 99.4 7.1E-13 2.4E-17 102.0 7.9 84 241-324 7-100 (176)
57 3vol_A Aerotaxis transducer AE 99.4 1E-11 3.5E-16 100.1 13.6 110 16-139 20-141 (233)
58 3p7n_A Sensor histidine kinase 99.4 1.6E-12 5.6E-17 106.6 9.1 85 240-324 62-156 (258)
59 2kdk_A ARYL hydrocarbon recept 99.4 7.9E-13 2.7E-17 94.9 5.7 79 243-324 5-94 (121)
60 3bwl_A Sensor protein; structu 99.4 2E-12 7E-17 93.5 7.9 78 242-324 18-106 (126)
61 3fg8_A Uncharacterized protein 99.3 4.8E-12 1.7E-16 90.6 9.5 108 17-136 11-118 (118)
62 2vv6_A FIXL, sensor protein FI 99.3 1.1E-12 3.9E-17 93.9 5.4 72 250-324 2-87 (119)
63 4f3l_A Mclock, circadian locom 99.3 2.6E-12 8.9E-17 110.5 8.4 108 28-139 251-359 (361)
64 3f1p_A Endothelial PAS domain- 99.3 1.3E-12 4.5E-17 93.3 5.4 71 251-324 9-89 (117)
65 2vlg_A Sporulation kinase A; h 99.3 6.5E-12 2.2E-16 88.8 8.5 90 22-117 3-92 (111)
66 2qkp_A Uncharacterized protein 99.3 2.8E-11 9.5E-16 90.4 12.2 115 18-139 19-136 (151)
67 4hi4_A Aerotaxis transducer AE 99.3 5E-11 1.7E-15 85.7 13.1 104 18-136 5-121 (121)
68 4eet_B Phototropin-2; LOV, blu 99.3 6.3E-12 2.2E-16 88.8 7.6 79 246-324 2-90 (115)
69 4f3l_B BMAL1B; BHLH, PAS, circ 99.3 9.1E-12 3.1E-16 107.9 9.9 107 29-138 279-386 (387)
70 3olo_A Two-component sensor hi 99.3 2.9E-12 9.9E-17 91.2 5.7 78 243-324 15-98 (118)
71 3mqq_A Transcriptional regulat 99.3 2.1E-12 7.1E-17 92.7 4.7 79 242-324 4-93 (120)
72 3ue6_A Aureochrome1; PAS/LOV d 99.3 7.5E-12 2.6E-16 94.9 8.1 88 237-324 31-128 (166)
73 3t50_A Blue-light-activated hi 99.3 1.2E-11 4E-16 89.5 7.3 79 246-324 2-90 (128)
74 1ll8_A PAS kinase; PAS domain, 99.2 7.2E-12 2.4E-16 89.0 5.2 72 250-324 7-93 (114)
75 3b33_A Sensor protein; structu 99.2 1.6E-10 5.3E-15 81.9 11.6 107 19-134 8-115 (115)
76 3luq_A Sensor protein; PAS, hi 99.2 3.5E-11 1.2E-15 84.7 7.1 80 241-324 3-92 (114)
77 2wkq_A NPH1-1, RAS-related C3 99.2 3.4E-11 1.2E-15 102.5 7.6 81 244-324 14-104 (332)
78 3d72_A Vivid PAS protein VVD; 99.2 4.4E-11 1.5E-15 89.1 6.4 78 246-324 31-129 (149)
79 3cax_A Uncharacterized protein 99.1 7.6E-10 2.6E-14 95.2 11.8 115 16-140 237-351 (369)
80 3mjq_A Uncharacterized protein 99.1 9E-11 3.1E-15 84.3 4.6 78 244-324 2-88 (126)
81 2z6d_A Phototropin-2; PAS-fold 99.1 3.2E-10 1.1E-14 81.1 7.3 85 240-324 5-99 (130)
82 3nja_A Probable ggdef family p 99.1 1.6E-10 5.4E-15 82.7 5.4 83 239-324 5-99 (125)
83 3icy_A Sensor protein; sensory 99.0 9.7E-11 3.3E-15 83.1 3.9 82 240-324 3-96 (118)
84 3lyx_A Sensory BOX/ggdef domai 99.0 4.3E-10 1.5E-14 79.8 7.2 81 241-324 7-97 (124)
85 3mr0_A Sensory box histidine k 99.0 4.2E-10 1.4E-14 83.2 7.2 85 237-324 5-101 (142)
86 1nwz_A PYP, photoactive yellow 99.0 2.5E-10 8.5E-15 80.9 5.6 77 245-324 21-108 (125)
87 3rty_A Period circadian protei 99.0 1.8E-09 6.2E-14 91.2 11.1 108 28-138 154-266 (339)
88 1mzu_A PPR; photoactive yellow 99.0 3.5E-10 1.2E-14 80.3 5.5 76 246-324 27-113 (129)
89 3a0r_A Sensor protein; four he 99.0 2.6E-10 8.8E-15 97.7 5.8 118 15-143 5-123 (349)
90 1ll8_A PAS kinase; PAS domain, 99.0 4.4E-10 1.5E-14 79.6 5.7 103 26-134 6-113 (114)
91 1nwz_A PYP, photoactive yellow 99.0 1.3E-08 4.5E-13 72.1 12.8 100 21-127 20-121 (125)
92 1byw_A Protein (human ERG pota 99.0 1E-09 3.5E-14 75.9 7.2 73 252-324 2-86 (110)
93 3a0s_A Sensor protein; PAS-fol 99.0 1.3E-08 4.5E-13 68.4 12.5 95 27-132 1-96 (96)
94 3sw1_A Sensory box protein; li 99.0 7.1E-10 2.4E-14 83.5 6.4 82 240-324 24-118 (162)
95 2jhe_A Transcription regulator 99.0 1.7E-09 5.8E-14 84.1 8.5 108 15-138 77-190 (190)
96 3eeh_A Putative light and redo 99.0 3.1E-10 1E-14 80.9 3.9 86 237-324 7-103 (125)
97 2w0n_A Sensor protein DCUS; si 99.0 2.5E-10 8.7E-15 80.9 3.2 104 15-134 12-118 (118)
98 1mzu_A PPR; photoactive yellow 99.0 2E-08 6.8E-13 71.3 12.8 100 21-127 25-126 (129)
99 2v0u_A NPH1-1, LOV2; kinase, t 99.0 1.2E-09 4E-14 80.0 6.7 82 243-324 4-95 (146)
100 3mxq_A Sensor protein; PSI2, M 99.0 3.5E-10 1.2E-14 84.4 3.8 61 243-307 24-84 (152)
101 2l0w_A Potassium voltage-gated 99.0 2.1E-09 7E-14 77.9 7.9 83 242-324 20-114 (138)
102 3fc7_A HTR-like protein, senso 98.9 3.8E-10 1.3E-14 80.9 2.8 52 240-294 18-69 (125)
103 3h9w_A Diguanylate cyclase wit 98.9 5.7E-10 2E-14 79.0 3.5 73 250-324 2-85 (115)
104 3b33_A Sensor protein; structu 98.9 1.4E-09 4.9E-14 76.8 5.1 78 243-324 9-95 (115)
105 3fg8_A Uncharacterized protein 98.9 1.3E-09 4.5E-14 77.7 4.7 62 242-306 13-74 (118)
106 4dj3_A Period circadian protei 98.9 2.9E-08 9.9E-13 83.0 12.9 107 29-138 175-284 (317)
107 1v9y_A Heme PAS sensor protein 98.8 7.3E-09 2.5E-13 78.1 6.9 81 241-324 40-134 (167)
108 3gdi_A Period circadian protei 98.8 7.2E-08 2.5E-12 80.3 11.8 106 30-138 167-274 (309)
109 3k3c_A Protein RV1364C/MT1410; 98.7 6.8E-09 2.3E-13 77.8 4.7 60 241-305 17-77 (158)
110 4dj2_A Period circadian protei 98.7 5.5E-08 1.9E-12 81.4 10.0 107 29-138 177-285 (320)
111 4eho_A Bacteriophytochrome, PA 98.7 1.1E-08 3.8E-13 94.2 6.3 79 242-324 519-607 (635)
112 3kx0_X Uncharacterized protein 98.7 9E-09 3.1E-13 79.6 4.9 54 241-299 37-91 (185)
113 4hi4_A Aerotaxis transducer AE 98.7 2.5E-08 8.5E-13 71.3 5.1 51 241-294 5-67 (121)
114 3a0s_A Sensor protein; PAS-fol 98.6 4.2E-08 1.4E-12 65.9 4.9 39 251-292 2-40 (96)
115 3vol_A Aerotaxis transducer AE 98.5 1.8E-07 6.3E-12 75.1 5.6 51 241-294 22-84 (233)
116 2w0n_A Sensor protein DCUS; si 98.4 1.4E-07 4.9E-12 66.3 3.9 54 240-296 14-70 (118)
117 3a0r_A Sensor protein; four he 98.4 6.4E-08 2.2E-12 82.7 2.4 52 241-295 8-59 (349)
118 2ykf_A Pdtas, probable sensor 97.7 7E-08 2.4E-12 80.6 0.0 112 23-145 175-295 (305)
119 2qkp_A Uncharacterized protein 98.3 4.8E-07 1.6E-11 67.3 4.1 52 241-296 19-73 (151)
120 2jhe_A Transcription regulator 98.3 7.6E-07 2.6E-11 68.9 5.4 53 241-296 80-132 (190)
121 2ykf_A Pdtas, probable sensor 97.4 4E-07 1.4E-11 76.0 0.0 47 245-295 174-223 (305)
122 3cax_A Uncharacterized protein 97.8 1.9E-05 6.6E-10 67.8 4.6 53 239-296 237-289 (369)
123 1oj5_A Steroid receptor coacti 97.7 0.00011 3.8E-09 51.7 6.9 102 31-136 10-115 (132)
124 1oj5_A Steroid receptor coacti 97.4 8.4E-05 2.9E-09 52.4 3.0 59 263-322 16-88 (132)
125 2ool_A Sensor protein; bacteri 96.4 0.0022 7.5E-08 53.7 3.7 50 252-303 42-92 (337)
126 4ew7_A Conjugative transfer: r 91.2 0.52 1.8E-05 31.1 5.3 34 243-279 22-55 (127)
127 2ool_A Sensor protein; bacteri 89.6 0.42 1.4E-05 40.0 4.9 34 40-73 52-85 (337)
128 3s7o_A Bacteriophytochrome; bi 85.2 0.48 1.7E-05 39.5 2.7 42 252-295 52-94 (343)
129 4e04_A Bacteriophytochrome (li 81.2 0.71 2.4E-05 38.3 2.2 44 252-298 29-73 (327)
130 4ew7_A Conjugative transfer: r 76.6 14 0.00047 24.5 11.8 94 16-117 18-112 (127)
131 3zq5_A Phytochrome-like protei 75.9 1.1 3.8E-05 39.8 2.0 43 252-296 29-72 (520)
132 4e04_A Bacteriophytochrome (li 68.6 34 0.0012 28.3 9.0 51 31-88 32-82 (327)
133 4dah_A Sporulation kinase D; a 58.6 56 0.0019 24.6 9.9 97 16-138 56-154 (217)
134 3s7o_A Bacteriophytochrome; bi 48.4 13 0.00046 30.9 3.3 39 32-72 56-94 (343)
135 3clo_A Transcriptional regulat 44.5 11 0.00038 29.9 2.3 32 251-284 43-74 (258)
136 3nhq_A Bacteriophytochrome; ph 42.0 11 0.00039 33.3 2.1 40 252-296 26-67 (505)
137 3pxp_A Helix-turn-helix domain 38.4 36 0.0012 27.7 4.3 37 239-278 97-133 (292)
138 2hje_A Autoinducer 2 sensor ki 34.5 1.6E+02 0.0053 22.7 9.9 88 24-136 58-145 (221)
139 3c38_A Autoinducer 2 sensor ki 33.4 1.8E+02 0.0062 23.1 8.6 89 24-137 77-165 (270)
140 1p0z_A Sensor kinase CITA; tra 32.4 1.2E+02 0.0041 20.7 9.3 26 110-136 103-128 (131)
141 3zq5_A Phytochrome-like protei 29.8 22 0.00074 31.7 1.8 40 32-73 33-72 (520)
142 3e4o_A C4-dicarboxylate transp 25.5 2.7E+02 0.0091 22.5 13.1 95 19-138 103-198 (305)
143 3pxp_A Helix-turn-helix domain 25.2 1.1E+02 0.0037 24.8 5.1 37 16-55 97-133 (292)
144 3nhq_A Bacteriophytochrome; ph 20.8 2.3E+02 0.008 25.0 6.6 35 32-71 30-65 (505)
No 1
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=99.97 E-value=2.3e-29 Score=203.92 Aligned_cols=190 Identities=19% Similarity=0.361 Sum_probs=163.8
Q ss_pred EEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEE
Q 020523 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLF 110 (325)
Q Consensus 31 i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~~~~~ 110 (325)
|+++|.+ |.++++|++|++++||++++++|++...+.++.........+.+.+..+..+..++...++||..+|+.+
T Consensus 2 i~i~D~~---g~i~~~N~a~~~l~Gy~~~el~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~ 78 (227)
T 3ewk_A 2 VSITDLQ---GRILYANDNFCAVSRYGREELVGQDHRIVNSGYHGKAYIRDMWRTISRGNIWQGEFCNRRKDGTRYWVDS 78 (227)
T ss_dssp EEEEETT---CBEEEECHHHHHHTTCCHHHHTTSBGGGGCCSCSCHHHHHHHHHHHTTTCCEEEEEEEECSSSCEEEEEE
T ss_pred EEEECCC---CcEEehHHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCeEEEEEEEEcCCCCEEeeee
Confidence 6789999 9999999999999999999999999877776666666667777888888889999999999999999999
Q ss_pred EEEEeecCCCCceEEEEEEEeccCcchhhhhccCCcccCCCCchhhHHHhhhhhhhhcccchhhhhhhccccccCCCCcc
Q 020523 111 KMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEI 190 (325)
Q Consensus 111 ~~~~~~~~~~g~~~~~~~~~~DITe~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (325)
+..|+.+ .+|.+.+++++.+|||++|++
T Consensus 79 ~~~p~~d-~~g~~~~~~~~~~DIT~~k~~--------------------------------------------------- 106 (227)
T 3ewk_A 79 TIVPLMD-NAGKPRQYISIRRDITAQKEA--------------------------------------------------- 106 (227)
T ss_dssp EEEEEEC-SSSCEEEEEEEEEECTTTTHH---------------------------------------------------
T ss_pred EEEEEEc-CCCCEEEEEEEEEehhhHHHH---------------------------------------------------
Confidence 9999998 899999999999999999985
Q ss_pred cchhhhHHHHHHHHhhhhhhHhhhhccceeeccceeeeeecCCCCcccchhhhHhhhhccCCceEEecCCCCCCCeEEEe
Q 020523 191 EDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYAS 270 (325)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~d~~~~dg~i~~~N 270 (325)
+.+++. ++.++++++++|+++|. +|+|+++|
T Consensus 107 -------e~~l~~---------------------------------------~~~~~~~~~~~i~~~d~---~g~i~~~N 137 (227)
T 3ewk_A 107 -------EAQLAR---------------------------------------LKQAMDANSEMILLTDR---AGRIIYAN 137 (227)
T ss_dssp -------HHHHHH---------------------------------------HHHHHHTCCSEEEEECT---TSCEEEEC
T ss_pred -------HHHHHH---------------------------------------HHHHHhcCcCeEEEEcC---CCcEEEEc
Confidence 111111 23357778899999997 57999999
Q ss_pred hhhHHhhCCCcccccccccccccCCCCChHHHHHHHH----------hhccccCCCc------eeeEEee
Q 020523 271 DAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSI----------AISPYPKKKS------IYMEYVR 324 (325)
Q Consensus 271 ~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~----------e~~~~~kdG~------~~~~~~~ 324 (325)
++|++++||+++|++|+++..+.+|.........+++ |++.++|||+ .+|++++
T Consensus 138 ~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k~G~~~~dg~~~~~~~~ 207 (227)
T 3ewk_A 138 PALCRFSGMAEGELLGQSPSILDSPLADQETLAAMQEALQAGQPWSGRLLNRRRTGPAPHDAEDYWAEIS 207 (227)
T ss_dssp HHHHHHHTCCTHHHHSSCGGGGBCTTSCHHHHHHHHHHHHHTCCEECCEEEEEECCSSSSCEEEEEEEEE
T ss_pred hHHHHHhCCCHHHHcCCChhhccCCCCCHHHHHHHHHHHHcCCceeEEEEEECCCCCcCcccceEEEEEE
Confidence 9999999999999999999999988888887777765 7777888886 8998775
No 2
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=99.81 E-value=1.5e-18 Score=125.39 Aligned_cols=117 Identities=20% Similarity=0.377 Sum_probs=104.8
Q ss_pred HHHHHHHHhhCCCeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCCCeEEEE
Q 020523 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNL 96 (325)
Q Consensus 17 ~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~ 96 (325)
..+++.++++++++++++|.+ |.++++|++|++++||+.++++|++...+.++.........+...+..+..+..++
T Consensus 4 ~~~~~~~~~~~~~~i~~~d~~---g~i~~~N~a~~~~~G~~~~elig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~ 80 (120)
T 2gj3_A 4 PEIFRQTVEHAPIAISITDLK---ANILYANRAFRTITGYGSEEVLGKNESILSNGTTPRLVYQALWGRLAQKKPWSGVL 80 (120)
T ss_dssp HHHHHHHHHHCSSEEEEECTT---CBEEEECHHHHHHHCCCTTGGGGCBGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHhCCCeEEEECCC---CCEEeehHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCCEEEEE
Confidence 357889999999999999999 99999999999999999999999998777776666555666777778888888888
Q ss_pred EEEecCCCEEEEEEEEEEeecCCCCceEEEEEEEeccCcch
Q 020523 97 LNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137 (325)
Q Consensus 97 ~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k 137 (325)
...+++|..+|+.+++.|+.+ .+|.+.+++++.+|||++|
T Consensus 81 ~~~~~dG~~~~~~~~~~pi~~-~~g~~~~~v~~~~DITe~k 120 (120)
T 2gj3_A 81 VNRRKDKTLYLAELTVAPVLN-EAGETIYYLGMHRDTSELH 120 (120)
T ss_dssp EEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEEEEECCSCC
T ss_pred EEEcCCCCEEEEEEEEEEEEC-CCCCEEEEEEEeccCcccC
Confidence 889999999999999999998 8999999999999999986
No 3
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.77 E-value=1.1e-17 Score=144.04 Aligned_cols=65 Identities=9% Similarity=0.109 Sum_probs=56.3
Q ss_pred HHHHHHHHhhCCCeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHH
Q 020523 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIRE 84 (325)
Q Consensus 17 ~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~ 84 (325)
..+...++++++..+++++.+ |.++|+|+++..++||++++++|+++.++++|++...+...+..
T Consensus 85 ~~~~~~~l~a~~~~i~v~~~~---G~i~yvs~~~~~~lGy~~~el~g~~~~~~ihp~D~~~~~~~l~~ 149 (361)
T 4f3l_A 85 EEFTQLMLEALDGFFLAIMTD---GSIIYVSESVTSLLEHLPSDLVDQSIFNFIPEGEHSEVYKILST 149 (361)
T ss_dssp HHHHHHHHHHTTEEEEEEETT---SBEEEECTTHHHHHCCCHHHHTTSBGGGGSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHhcCceEEEEcCC---ccEEEEechhhhhcCCCHHHhcCCcHHHhcCHHHHHHHHHHhcc
Confidence 445667889999999999999 99999999999999999999999999999999887766555543
No 4
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=99.76 E-value=2.4e-17 Score=127.39 Aligned_cols=127 Identities=25% Similarity=0.413 Sum_probs=113.5
Q ss_pred hHHHHHHHHHhhCCCeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCCCeEE
Q 020523 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (325)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (325)
+...+++.++++++++++++|.+.++|.++++|+++++++||++++++|+++..++++.+.......+...+..+..+..
T Consensus 4 ~~~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (176)
T 4hia_A 4 KQFEKIRAVFDRSGVALTLVDMSLPEQPVVLANPPFLRMTGYTEGQILGFNCRFLQRGDENAQARADIRDALKLGRELQV 83 (176)
T ss_dssp HHHHHHHHHHHHCSSCCEEEETTSTTCCEEEECHHHHHHHTCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHhcCCCcEEEEecCCCCCcEEEECHHHHHHHCcCHHHHcCCCcceeeCCCCCHHHHHHHHHHHHcCCceEE
Confidence 34457889999999999999986555899999999999999999999999988888888877777888888888888888
Q ss_pred EEEEEecCCCEEEEEEEEEEeecCCCCceEEEEEEEeccCcchhhhhc
Q 020523 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142 (325)
Q Consensus 95 e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~~~~~ 142 (325)
++...+++|..+|+.+++.|+.+ .+|.+.+++++.+|||++|+++++
T Consensus 84 e~~~~~~dG~~~~~~~~~~pi~~-~~g~~~~~~~~~~DITe~k~~e~~ 130 (176)
T 4hia_A 84 VLRNYRANDEPFDNLLFLHPVGG-RPDAPDYFLGSQFELGRSGNSEEA 130 (176)
T ss_dssp EEEEECTTCCEEEEEEEEEEESS-BTTBCSEEEEEEEEESSSGGGHHH
T ss_pred EEEEEcCCCCEEEEEEEEEEeeC-CCCCeEEEEEEEEECcHhhHHHHH
Confidence 88889999999999999999998 799999999999999999997544
No 5
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=99.75 E-value=1.1e-17 Score=120.99 Aligned_cols=116 Identities=9% Similarity=0.137 Sum_probs=98.6
Q ss_pred HHHHHHhhCCCeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHH-hCCCeEEEEE
Q 020523 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIR-EERPIEVNLL 97 (325)
Q Consensus 19 ~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~e~~ 97 (325)
++..+++++++.+++.|.+ |.++++|+++++++||++++++|+++..+++|++.......+.+.+. .+..+..+++
T Consensus 3 ~~~ll~e~~~d~i~~~d~~---g~i~~~n~~~~~~~G~~~~el~g~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~~e~r 79 (121)
T 3f1p_B 3 FKGLNVCQPTRFISRHNIE---GIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFR 79 (121)
T ss_dssp -----CCCCCEEEEEECTT---SBEEEECTTHHHHHSCCGGGTTTSBGGGGBCTTTHHHHHHHHHHHTTSTTCCEEEEEE
T ss_pred cccceecCCCceEEEECCC---ceEEEECcchhhhhCCChHHHcCCCHHHeECHHHHHHHHHHHHHHHhcCCCcccEEEE
Confidence 4556889999999999999 99999999999999999999999998889999888777777777664 4456788999
Q ss_pred EEecCCCEEEEEEEEEEeecCC-CCceEEEEEEEeccCcchh
Q 020523 98 NYKKDGTPFWMLFKMSLVFGKE-DGRATHFVAVQVPIVSRKH 138 (325)
Q Consensus 98 ~~~~dg~~~~~~~~~~~~~~~~-~g~~~~~~~~~~DITe~k~ 138 (325)
+.+++|..+|+.++..|+.+ . +|.+.+++++.+|||++|+
T Consensus 80 ~~~~dG~~~w~~~~~~~~~~-~~~g~~~~iv~~~~DIT~~kq 120 (121)
T 3f1p_B 80 FRSKNQEWLWMRTSSFTFQN-PYSDEIEYIICTNTNVKNSSQ 120 (121)
T ss_dssp EECTTSCEEEEEEEEEEECC-TTCCCCCEEEEEEEECCCC--
T ss_pred EEecCCCEEEEEEEEEEEEC-CCCCceeEEEEEeEEcccccC
Confidence 99999999999999999987 5 7888999999999999986
No 6
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=99.75 E-value=8.6e-17 Score=118.16 Aligned_cols=117 Identities=36% Similarity=0.668 Sum_probs=96.6
Q ss_pred HHHHhhCCCeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCCCeEEEEEEEe
Q 020523 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYK 100 (325)
Q Consensus 21 ~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 100 (325)
+.++++++++++++|.+..++.++++|++|++++||+.++++|+++..+.++.........+...+..+..+..++...+
T Consensus 2 ~~~~~~~~~~i~~~d~~g~~~~i~~~N~a~~~~~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 81 (132)
T 2pr5_A 2 SHMLDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNIRTALQNKEPVTVQIQNYK 81 (132)
T ss_dssp ----CCCCCEEEEECTTSTTCCEEEECHHHHHHHSCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEEC
T ss_pred hhHHhcCCCcEEEEeCCCCCCcEEEECHHHHHHhCcCHHHHcCCChhhhCCCCCCHHHHHHHHHHHHcCCCeEEEEEEEe
Confidence 35789999999999997111399999999999999999999999887777666666556677777778888888888899
Q ss_pred cCCCEEEEEEEEEEeecCCCCceEEEEEEEeccCcchhhh
Q 020523 101 KDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140 (325)
Q Consensus 101 ~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~~~ 140 (325)
+||..+|+.+++.|+.+ . + +.+++++.+|||++|++|
T Consensus 82 kdG~~~~~~~~~~~~~~-~-~-~~~~~~~~~DITe~k~~e 118 (132)
T 2pr5_A 82 KDGTMFWNELNIDPMEI-E-D-KTYFVGIQNDITKQKEYE 118 (132)
T ss_dssp TTSCEEEEEEEEEEEEE-T-T-EEEEEEEEEECHHHHHHH
T ss_pred cCCCeeeeEEEEEeccC-C-C-eeEEEEEEEeCcHHHHHH
Confidence 99999999999999987 4 3 788999999999999963
No 7
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=99.74 E-value=7.8e-17 Score=120.03 Aligned_cols=121 Identities=14% Similarity=0.214 Sum_probs=105.7
Q ss_pred hHHHHHHHHHhhCCCeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCC--CCCcccCCCCChHHHHHHHHHHHhCCCe
Q 020523 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGR--NGRMFQGPRTNRRTIMEIREAIREERPI 92 (325)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (325)
.++++|+.+++.++.++|.+|.. +..+++|++++.++||+++++.+. .+..+++|++...+...+...+..+..+
T Consensus 6 ~se~rl~~~~~~~~~g~w~~d~~---~~~~~~s~~~~~~~G~~~~~~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~~~~~ 82 (142)
T 3mr0_A 6 ASEERFQLAVSGASAGLWDWNPK---TGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTY 82 (142)
T ss_dssp ---CCHHHHHHHTTCEEEEECTT---TCCEEECHHHHHHTTCCGGGSCSEEC---CCBCTTTHHHHHHHHHHHHHHCCCE
T ss_pred HHHHHHHHHHHhCCcEEEEEEcC---CCeEEECHHHHHHhCCCccccCCCHHHHHhhcCHHHHHHHHHHHHHHHhCCCce
Confidence 44557889999999999999999 999999999999999999988763 3556788988888888888888888888
Q ss_pred EEEEEEEecCCCEEEEEEEEEEeecCCCCceEEEEEEEeccCcchhh
Q 020523 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (325)
Q Consensus 93 ~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~~ 139 (325)
..++++.+++|..+|+...+.|+.+ .+|.+.+++|+..|||++|++
T Consensus 83 ~~e~r~~~~~G~~~w~~~~~~~~~d-~~g~~~~~~G~~~DITerk~~ 128 (142)
T 3mr0_A 83 DVEYRVRTRSGDFRWIQSRGQALWN-SAGEPYRMVGWIMDVTDRKRD 128 (142)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEEEEECHHHHHH
T ss_pred EEEEEEECCCCCEEEEEEEEEEEEC-CCCCEEEEEEEEEcCchHHHH
Confidence 8999999999999999999999998 899999999999999999996
No 8
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=99.74 E-value=1.6e-16 Score=112.73 Aligned_cols=108 Identities=41% Similarity=0.805 Sum_probs=94.7
Q ss_pred CCCeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCCCeEEEEEEEecCCCEE
Q 020523 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPF 106 (325)
Q Consensus 27 ~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~ 106 (325)
++++++++|....+|.++++|++|++++||+.++++|++...+.++.........+++.+..+..+..++..+++||..+
T Consensus 2 ~~~~i~i~d~~~~~g~i~~~N~a~~~l~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~ 81 (109)
T 1n9l_A 2 LRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQKIRDAIKKGEACSVRLLNYRKDGTPF 81 (109)
T ss_dssp CSCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEE
T ss_pred CccEEEEEcCCCCCCeEEEEchHHHHHHCcCHHHHcCCCchhcCCCCCCHHHHHHHHHHHHcCCcEEEEEEEEcCCCCEE
Confidence 57899999952122999999999999999999999999977777776666666778888888889999999999999999
Q ss_pred EEEEEEEEeecCCCCceEEEEEEEeccCc
Q 020523 107 WMLFKMSLVFGKEDGRATHFVAVQVPIVS 135 (325)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~~~~~~~DITe 135 (325)
|+.+++.|+++ ++|.+.+++++.+|||+
T Consensus 82 ~~~~~~~pi~d-~~G~~~~~v~~~~DITe 109 (109)
T 1n9l_A 82 WNLLTVTPIKT-PDGRVSKFVGVQVDVTS 109 (109)
T ss_dssp EEEEEEEEEEC-TTSCEEEEEEEEEECCC
T ss_pred EEEEEEEEEEC-CCCCEEEEEEEEEeCCC
Confidence 99999999998 89999999999999996
No 9
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=99.73 E-value=6.6e-17 Score=123.34 Aligned_cols=120 Identities=39% Similarity=0.656 Sum_probs=109.4
Q ss_pred HHHHHHHHHhhCCCeEEEEcC---CCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCCCe
Q 020523 16 YTLWVHEALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92 (325)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~~d~---~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (325)
...++..++++++++++++|. + |.++++|+++++++||+.++++|+++..++++.........+...+..+..+
T Consensus 33 ~~~~~~~~~~~~~~~i~~~d~~~~~---g~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 109 (166)
T 3ue6_A 33 PDYSLVKALQMAQQNFVITDASLPD---NPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDPRAVDKIRNAITKGVDT 109 (166)
T ss_dssp CCCHHHHHHHHTTSCEEEEETTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHHhcCCceEEEEEccCCC---CcEEEECHHHHHHhCcCHHHHcCCCHhheeCCCCCHHHHHHHHHHHhcCCce
Confidence 445788999999999999999 8 9999999999999999999999999888888877777777788888888888
Q ss_pred EEEEEEEecCCCEEEEEEEEEEeecCCCCceEEEEEEEeccCcchhh
Q 020523 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (325)
Q Consensus 93 ~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~~ 139 (325)
..+.....++|..+|+.+++.|+.+ .+|.+.+++++++|||++|.+
T Consensus 110 ~~e~~~~~~~g~~~~~~~~~~~i~~-~~g~~~~~~~~~~DITe~k~~ 155 (166)
T 3ue6_A 110 SVCLLNYRQDGTTFWNLFFVAGLRD-SKGNIVNYVGVQSKVSEDYAK 155 (166)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEECCBCCHHHHH
T ss_pred EEEEEEEcCCCCEEEEEEEEEeeeC-CCCCEEEEEEEEEechHHHHH
Confidence 8888889999999999999999998 889999999999999999985
No 10
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=99.72 E-value=1.5e-16 Score=115.79 Aligned_cols=117 Identities=38% Similarity=0.664 Sum_probs=102.6
Q ss_pred HHhhCCCeEEEEcC---CCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCCCeEEEEEEE
Q 020523 23 ALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNY 99 (325)
Q Consensus 23 ~~~~~~~~i~~~d~---~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 99 (325)
++++++.+++++|. + |.++++|++++.++|++.++++|+++..++++.........+...+..+..+..+....
T Consensus 2 ~~~~~~~~i~~~d~~~~~---g~i~~~N~~~~~l~g~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 78 (128)
T 3t50_A 2 ASEFTLMPMLITNPHLPD---NPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPIDIDIINY 78 (128)
T ss_dssp CCCCCSSCEEEECTTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred ccccCcccEEEecCCCCC---CcEEEEcHHHHHHhCcCHHHHcCCCHhhhcCCccCHHHHHHHHHHHHcCCCceeEEEEE
Confidence 47889999999999 7 89999999999999999999999998888877777777777888888888888888889
Q ss_pred ecCCCEEEEEEEEEEeecCCCCceEEEEEEEeccCcchhhhhcc
Q 020523 100 KKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (325)
Q Consensus 100 ~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~~~~~~ 143 (325)
.++|..+|+.+++.|+.+ .+|.+.+++++++|||++|+++++.
T Consensus 79 ~~~g~~~~~~~~~~~i~~-~~g~~~~~~~~~~DITe~k~~e~~~ 121 (128)
T 3t50_A 79 KKSGEAFWNRLHISPVHN-ANGRLQHFVSSQLDVTLELVPRGSL 121 (128)
T ss_dssp CTTCCEEEEEEEEEEEEC-TTSCEEEEEEEEEECHHHHC-----
T ss_pred cCCCCEEEEEEEEEEEEC-CCCCEEEEEEEEEEcchhhhhhhhh
Confidence 999999999999999998 8899999999999999999985543
No 11
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.71 E-value=9.2e-17 Score=139.30 Aligned_cols=70 Identities=14% Similarity=0.027 Sum_probs=58.6
Q ss_pred CceEEecCCCCCCCeEEEehhhHHhhCCCcccccccccccccCCCCChHHHHHHHH-----------hhccccCCCceee
Q 020523 252 QSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSI-----------AISPYPKKKSIYM 320 (325)
Q Consensus 252 ~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~-----------e~~~~~kdG~~~~ 320 (325)
+.++..+. ||+++|+|++++.++||+++|++|+++.++++|++.......+.+ ++++++|||+.+|
T Consensus 279 ~fi~~~~~---dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~~~~~~~~eyR~~~kdG~~vW 355 (387)
T 4f3l_B 279 EYVSRHAI---DGKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCYKFKIKDGSFIT 355 (387)
T ss_dssp EEEEEECT---TSBEEEECTHHHHHHCCCHHHHTTSBGGGTBCHHHHHHHHHHHHHHTTCSSCEECCCEEEECTTSCEEE
T ss_pred eEEEEECC---CCEEEEECCCcccccCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhcCCCeeeEEEEEEccCCCEEE
Confidence 44555555 689999999999999999999999999999999887776665544 7888899999999
Q ss_pred EEee
Q 020523 321 EYVR 324 (325)
Q Consensus 321 ~~~~ 324 (325)
++.+
T Consensus 356 v~~~ 359 (387)
T 4f3l_B 356 LRSR 359 (387)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8753
No 12
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=99.70 E-value=3.4e-16 Score=128.75 Aligned_cols=120 Identities=30% Similarity=0.597 Sum_probs=105.9
Q ss_pred hHHHHHHHHHhhCCCeEEEEcC---CCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCCC
Q 020523 15 RYTLWVHEALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP 91 (325)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~---~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (325)
....+|+.++++++++++++|. + |.++++|++|++++||++++++|+++..+.++.+.......+...+..+..
T Consensus 60 ~~~~~~~~i~~~~~~~i~~~d~~~~~---g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~l~~~~~ 136 (258)
T 3p7n_A 60 PPAQWVLDLIEASPIASVVSDPRLAD---NPLIAINQAFTDLTGYSEEECVGRNCRFLAGSGTEPWLTDKIRQGVREHKP 136 (258)
T ss_dssp -CCHHHHHHHHTCSSEEEEECTTSTT---CCEEEECHHHHHHHCCCGGGTTTSCGGGGCCTTCCHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHhcCCccEEEEcCCCCC---CcEEEEhHHHHHHcCCCHHHHCCCChhhccCCCCchhHHHHHHHHHHcCCC
Confidence 3456799999999999999999 7 889999999999999999999999988888888888878888888888888
Q ss_pred eEEEEEEEecCCCEEEEEEEEEEeecCCCCceEEEEEEEeccCcchh
Q 020523 92 IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (325)
Q Consensus 92 ~~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~ 138 (325)
+..+....+++|..+|+.+++.|+.+ .+|.+.+++++++|||++|.
T Consensus 137 ~~~e~~~~~~dG~~~~~~~~~~pi~d-~~g~~~~~v~~~~DITerk~ 182 (258)
T 3p7n_A 137 VLVEILNYKKDGTPFRNAVLVAPIYD-DDDELLYFLGSQVEVDDDQP 182 (258)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEEEC-TTSCSEEEEEEEEEC-----
T ss_pred eEEEEEEEcCCCCEEEEeeEEEEEEc-CCCCEEEEEEEeeecchhhh
Confidence 88999999999999999999999998 89999999999999999954
No 13
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=99.70 E-value=2.1e-16 Score=133.58 Aligned_cols=70 Identities=6% Similarity=-0.037 Sum_probs=56.2
Q ss_pred CceEEecCCCCCCCeEEEehhhHHhhCCCcccccccccccccCCCCChHHHHHHHH---------------hhccccCCC
Q 020523 252 QSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSI---------------AISPYPKKK 316 (325)
Q Consensus 252 ~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~---------------e~~~~~kdG 316 (325)
+.++..++ ||+++|+|+++..++||+++|++|+++.++++|++.....+.+.+ ++++++|||
T Consensus 155 ~fi~r~~~---dG~~~yvn~~~~~lLGY~peELiG~s~~~~vHPdD~~~~~~~~~~~l~~G~~~~~~~~s~~yR~~~kdG 231 (339)
T 3rty_A 155 KFAIRHTA---TGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRFLIQNG 231 (339)
T ss_dssp EEEEEEET---TCBEEEECTTHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHTTSTTCCCBCCCEEEECTTS
T ss_pred eEEEEECC---CCeEEEcChhhhcccCCCHHHHcCCcHHHEECHHHHHHHHHHHHHHHHcCCcccccccceEEEEEccCC
Confidence 34455555 689999999999999999999999999999999987765544433 256678999
Q ss_pred ceeeEEee
Q 020523 317 SIYMEYVR 324 (325)
Q Consensus 317 ~~~~~~~~ 324 (325)
+.+|++.+
T Consensus 232 ~~vWlet~ 239 (339)
T 3rty_A 232 CYVLLETE 239 (339)
T ss_dssp CEEEEEEE
T ss_pred CEEEEEEE
Confidence 99998753
No 14
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=99.70 E-value=8.6e-17 Score=115.40 Aligned_cols=108 Identities=8% Similarity=0.170 Sum_probs=97.4
Q ss_pred CCCeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCCCeEEEEEEEecCCCEE
Q 020523 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPF 106 (325)
Q Consensus 27 ~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~ 106 (325)
+++.+++.|.+ |.++++|+++++++||++++++|+++..+++|++.......+...+..+..+..++++.+++|..+
T Consensus 8 ~~~~i~~~d~~---g~i~~~n~~~~~~~Gy~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~~ 84 (117)
T 3f1p_A 8 SKTFLSEHSMD---MKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYV 84 (117)
T ss_dssp GGEEEEEECTT---CBEEEECTHHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHSEEECCCEEEECTTSSEE
T ss_pred CccEEEEECCC---ceEEEECcChhhhhCCCHHHHcCCchhheECHHHHHHHHHHHHHHHhCCCeeeeEEEEEecCCCEE
Confidence 45678899999 999999999999999999999999988899998887777778888887777777889999999999
Q ss_pred EEEEEEEEeecCC-CCceEEEEEEEeccCcchh
Q 020523 107 WMLFKMSLVFGKE-DGRATHFVAVQVPIVSRKH 138 (325)
Q Consensus 107 ~~~~~~~~~~~~~-~g~~~~~~~~~~DITe~k~ 138 (325)
|+.++..|+.+ . +|.+.+++++.+|||++++
T Consensus 85 w~~~~~~~~~d-~~~g~~~~iv~~~~DITer~~ 116 (117)
T 3f1p_A 85 WLETQGTVIYN-PRNLQPQCIMCVNYVLSEIEK 116 (117)
T ss_dssp EEEEEEEEEEE-TTTTEEEEEEEEEEECSCCBC
T ss_pred EEEEeeEEEEC-CCCCCceEEEEEeeecccccc
Confidence 99999999998 6 7889999999999999986
No 15
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=99.70 E-value=8.6e-16 Score=109.13 Aligned_cols=111 Identities=41% Similarity=0.778 Sum_probs=98.9
Q ss_pred HHhhCCCeEEEEcC---CCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCCCeEEEEEEE
Q 020523 23 ALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNY 99 (325)
Q Consensus 23 ~~~~~~~~i~~~d~---~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 99 (325)
.+++++++++++|. + +.++++|+++++++|++.++++|+++..+.++.........+...+..+..+..+....
T Consensus 2 ~l~~~~~~i~~~d~~~~~---g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (115)
T 4eet_B 2 SPEFIEKNFVITDPRLPD---NPIIFASDGFLELTEYSREEILGRNARFLQGPETDQATVQKIRDAIRDQRETTVQLINY 78 (115)
T ss_dssp ---CCCCSEEEECTTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred ccccCCCcEEEEcCCCCC---CcEEEEcHHHHHHHCcCHHHHhCCCHHHhcCCCCChHHHHHHHHHHHcCCCcceEEEEe
Confidence 57889999999999 8 99999999999999999999999998888877777777777888888888888888888
Q ss_pred ecCCCEEEEEEEEEEeecCCCCceEEEEEEEeccCcch
Q 020523 100 KKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137 (325)
Q Consensus 100 ~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k 137 (325)
.++|..+|+.++..|+.+ .+|.+.+++++.+|||+++
T Consensus 79 ~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~DITer~ 115 (115)
T 4eet_B 79 TKSGKKFWNLLHLQPVRD-QKGELQYFIGVQLDGSDHV 115 (115)
T ss_dssp CTTCCEEEEEEEEEEEEC-TTSCEEEEEEEEEECSCCC
T ss_pred cCCCCEEEEEEEEEEEEC-CCCCEEEEEEEEEeecccC
Confidence 999999999999999998 8899999999999999974
No 16
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=99.69 E-value=3e-16 Score=113.30 Aligned_cols=120 Identities=14% Similarity=0.090 Sum_probs=93.1
Q ss_pred hHHHHHHHHHhhCCCeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcC--CCCCcccCCCCChHHHHHHHHHHHhCCCe
Q 020523 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIG--RNGRMFQGPRTNRRTIMEIREAIREERPI 92 (325)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (325)
....+++.+++.++.+++++|.+ +.++++|++++.++|++++++.| ..+..+++|++...+...+...+..+...
T Consensus 4 ~~~~~l~~~~~~~~~~i~~~d~~---~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 80 (125)
T 3nja_A 4 MAEKLLHTAESDAGIGSWVLHME---SGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVLGDRPF 80 (125)
T ss_dssp -------------CCEEEEEETT---TTEEEECHHHHHHHTCCTTTCCCBHHHHHHHBCTTTHHHHHHHHHHHHHSCCCE
T ss_pred HHHHHHHHHHHhCCeeEEEEEcC---CCcEEECHHHHHHhCCCcccccccHHHHHhhcChhHHHHHHHHHHHHHhcCCCc
Confidence 34567889999999999999999 99999999999999999999988 33445677877777777788888888888
Q ss_pred EEEEEEEecCCCEEEEEEEEEEeecCCCCceEEEEEEEeccCcchh
Q 020523 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (325)
Q Consensus 93 ~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~ 138 (325)
..+++..+++|..+|+.+.+.|+.+ .+|.+.+++++.+|||++|+
T Consensus 81 ~~e~~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~g~~~DITe~k~ 125 (125)
T 3nja_A 81 DVEYRIVRPDGQVRELLERNHIQRQ-ASGQVDHLWGTVIDMTEHKQ 125 (125)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEEEEECCC---
T ss_pred eEEEEEECCCCCEEEEEEeeEEEEC-CCCCEEEEEEEEEecccccC
Confidence 8899999999999999999999998 89999999999999999974
No 17
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=99.68 E-value=3.4e-16 Score=112.82 Aligned_cols=115 Identities=12% Similarity=0.093 Sum_probs=91.4
Q ss_pred HHHHHHhhCCCeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCC-hHHHHHHHHHHHhCCCeEEEEE
Q 020523 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTN-RRTIMEIREAIREERPIEVNLL 97 (325)
Q Consensus 19 ~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~e~~ 97 (325)
.|+.++++++.+++ ++.+ |.++++|+++++++||++++++|+++..++++... ......+...+..+..+..+..
T Consensus 4 ~~~~~~~~~~~~i~-~~~~---g~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 79 (120)
T 3mqq_A 4 DYKTAFHLAPIGLV-LSRD---RVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRI 79 (120)
T ss_dssp CHHHHHHHCSSEEE-EEET---TEEEEECHHHHHHTTSCHHHHTTCBGGGGSSSHHHHHHHHHHHHHHHHHHSCEEEEEE
T ss_pred hHHHHHhcCCceEE-EecC---CEEHHHHHHHHHHhCcCHHHhCCCchhhccCChhhHHHHHHHHHHHHhcCCcceEEEE
Confidence 36789999999996 5778 99999999999999999999999998776654322 2334455566667777888889
Q ss_pred EEecCCCEEEEEEEEEEeecCCCCceEEEEEEEeccCcchhh
Q 020523 98 NYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (325)
Q Consensus 98 ~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~~ 139 (325)
..+++|..+|+.++..|+. .++...+++++++|||++|++
T Consensus 80 ~~~~dG~~~~~~~~~~~~~--~~~~~~~~v~~~~DITerk~~ 119 (120)
T 3mqq_A 80 MKRAGGELFWCHVTGRALD--RTAPLAAGVWTFEDLSATRRV 119 (120)
T ss_dssp EECTTSCEEEEEEEEEESS--TTSTTSSEEEEEEESCC----
T ss_pred EEeCCCCEEEEEEEEEECC--CCCCceeEEEEEEcccHhhcc
Confidence 9999999999999999994 466667889999999999974
No 18
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=99.67 E-value=3.2e-15 Score=107.06 Aligned_cols=119 Identities=20% Similarity=0.264 Sum_probs=103.7
Q ss_pred HHHHHHHHHhhCCCeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCCCeEEE
Q 020523 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVN 95 (325)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 95 (325)
....++.+++.++.+++++|.+ +.++++|+++++++|++.++++|++...+.++.........+...+..+..+..+
T Consensus 5 ~~~~~~~~~~~~~~~i~~~d~~---~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (124)
T 3lyx_A 5 ILKQRAKAFDYVFDAIVVTDLQ---GFIIDWNKGSETLYGYSKEQAIGQPVNMLHVPGDTEHITSEVISAVENQGKWTGE 81 (124)
T ss_dssp HHHHHHHGGGTCSSEEEEEETT---CBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTTHHHHHHHHHHHHHHTSCEEEE
T ss_pred HHHHHHHHHhhcCceEEEECCC---CcEeehhhHHHHHhCCCHHHHcCCCHHHhcCcchhhHHHHHHHHHHHcCCcccce
Confidence 4567889999999999999999 9999999999999999999999998776666655555566677778888888888
Q ss_pred EEEEecCCCEEEEEEEEEEeecCCCCceEEEEEEEeccCcchh
Q 020523 96 LLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (325)
Q Consensus 96 ~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~ 138 (325)
.....++|..+|+.++..|+.+ .+|.+.+++++.+|||++|+
T Consensus 82 ~~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~Dit~~~~ 123 (124)
T 3lyx_A 82 IRMLHKDGHIGWIESMCVPIYG-ENYQMVGALGINRDITKRKK 123 (124)
T ss_dssp EEEECTTSCEEEEEEEEEEEEC-STTCEEEEEEEEEECSCC--
T ss_pred EEEEccCCCEEEEEEEEEEEEC-CCCCEEEEEEEEecchhhhc
Confidence 8888999999999999999998 88999999999999999986
No 19
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=99.66 E-value=6.8e-15 Score=106.19 Aligned_cols=121 Identities=37% Similarity=0.725 Sum_probs=103.7
Q ss_pred HHHHHHHHHhhCCCeEEEEc---CCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCCCe
Q 020523 16 YTLWVHEALDELPDSFTITD---PSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92 (325)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~~d---~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (325)
....++.+++.++.+++++| .+ +.++++|++++.++|++.++++|+++..+.++.........+...+..+...
T Consensus 4 ~~~~~~~~~~~~~~~i~~~d~~d~~---~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (130)
T 2z6d_A 4 VSQELKTALSTLQQTFVVSDATQPH---CPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDTDKNEVAKIRDCVKNGKSY 80 (130)
T ss_dssp ---CHHHHHHHTTCEEEEEETTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHhcccceeeeeccCCC---CcEEEecHHHHHHhCcCHHHHcCCChhhccCCCCCchHHHHHHHHHHcCCcc
Confidence 34567889999999999999 88 9999999999999999999999999888877777766667777778888888
Q ss_pred EEEEEEEecCCCEEEEEEEEEEeecCCCCceEEEEEEEeccCcchhhh
Q 020523 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140 (325)
Q Consensus 93 ~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~~~ 140 (325)
..+.....++|..+|+.+...|+.+ .+|.+.+++++.+|||++++++
T Consensus 81 ~~~~~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~Dit~~~~~e 127 (130)
T 2z6d_A 81 CGRLLNYKKDGTPFWNLLTVTPIKD-DQGNTIKFIGMQVEVSKYTEGV 127 (130)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEEEEECCTTC---
T ss_pred eeEEEEEcCCCcEEEEEEEEEEEEC-CCCCeeEEEEEEecchHHHHhh
Confidence 8888888899999999999999998 7899999999999999999863
No 20
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=99.65 E-value=2.9e-15 Score=109.62 Aligned_cols=123 Identities=17% Similarity=0.237 Sum_probs=93.9
Q ss_pred hhhHHhhhhhhHHHHHHHHHhhCCCeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHH
Q 020523 5 LGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIRE 84 (325)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~ 84 (325)
+..+++++. ....+++.++++++++++++|.+ |.++++|+++++++||++++++|+++..++++.........+..
T Consensus 4 ~~~~e~~l~-~~~~~~~~l~~~~~d~i~~~d~~---g~i~~~N~a~~~l~Gy~~~eliG~~~~~l~~~~~~~~~~~~~~~ 79 (130)
T 1d06_A 4 MLETEDVVR-ARDAHLRSILDTVPDATVVSATD---GTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPYRHEHDGYLQR 79 (130)
T ss_dssp HHHHHHHHH-HHTSCHHHHHTTCSSEEEEEETT---SBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHhhCcCeEEEECCC---CeEEEEcHHHHHHHCCCHHHHcCCcHHHHCCchhHHHHHHHHHH
Confidence 344555555 55567899999999999999999 99999999999999999999999998777766543333333334
Q ss_pred HHHhCCC----eEEEEEEEecCCCEEEEEEEEEEeecCCCCceEEEEEEEeccC
Q 020523 85 AIREERP----IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (325)
Q Consensus 85 ~~~~~~~----~~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 134 (325)
....+.. ...++...++||..+|+.+++.|+.+ . + ..+++++++|||
T Consensus 80 ~~~~~~~~~~~~~~e~~~~~kdG~~~~~~~~~~~~~~-~-~-~~~~~~~~~DIT 130 (130)
T 1d06_A 80 YMATGEKRIIGIDRVVSGQRKDGSTFPMKLAVGEMRS-G-G-ERFFTGFIRDLT 130 (130)
T ss_dssp HHHHCCCSSTTSCEEEEEECTTSCEEEEEEEEEEEEE-T-T-EEEEEEEEEECC
T ss_pred HHhcCCccccCCeeEEEEEeCCCCEEEEEEEEEEEEE-C-C-eEEEEEEEEECc
Confidence 3433332 23466778999999999999999976 3 3 345888999997
No 21
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=99.64 E-value=4.3e-15 Score=112.71 Aligned_cols=124 Identities=23% Similarity=0.437 Sum_probs=110.5
Q ss_pred HHHHHHHHHhhCCCeEEEEcCCCCCC---CEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCCCe
Q 020523 16 YTLWVHEALDELPDSFTITDPSISGH---PIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92 (325)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~~d~~~~~~---~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (325)
...+++.+++.++.+++++|.+ + .++++|++++.++|++.++++|+++..++++.........+...+..+..+
T Consensus 23 ~~~~~~~i~~~~~~~i~~~d~~---~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (162)
T 3sw1_A 23 NAQLLQSMVDASNDGIVVAEKE---GDDTILIYVNAAFEYLTGYSRDEILYQDCRFLQGDDRDQLGRARIRKAMAEGRPC 99 (162)
T ss_dssp CHHHHHHHHHTCSSEEEEEEEE---TTEEEEEEECHHHHHHHTCCHHHHTTSBGGGGTTTCCCCHHHHHHHHHHHHTCCE
T ss_pred hHHHHHHHHhhccCcEEEEeCC---CCccEEEEECHHHHHHHCCCHHHHcCCCcceecCCCcCHHHHHHHHHHHhcCCCC
Confidence 4568899999999999999999 9 999999999999999999999999888877776666777778888888888
Q ss_pred EEEEEEEecCCCEEEEEEEEEEeecCCCCceEEEEEEEeccCcchhhhhcc
Q 020523 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (325)
Q Consensus 93 ~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~~~~~~ 143 (325)
..+......+|..+|+.+++.|+.+ .+|.+.+++++++|||+++++++++
T Consensus 100 ~~~~~~~~~~g~~~~~~~~~~~i~~-~~g~~~~~~~~~~DiTe~k~~e~~l 149 (162)
T 3sw1_A 100 REVLRNYRKDGSAFWNELSITPVKS-DFDQRTYFIGIQKDVSRQVELEREL 149 (162)
T ss_dssp EEEEEEECTTCCEEEEEEEEEEEEC-SSSSCEEEEEEEEECHHHHHHHHHH
T ss_pred cceEEEECCCCCEEEEEEEEEEeec-CCCCEEEEEEEEEeCcHHHHHHHHH
Confidence 8888888999999999999999998 7899999999999999999974443
No 22
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=99.64 E-value=1.3e-15 Score=114.04 Aligned_cols=120 Identities=16% Similarity=0.129 Sum_probs=94.0
Q ss_pred hHHHHHHHHHhhCCCeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCCCeEE
Q 020523 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (325)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (325)
.....+..+++++++|++++|.+ |+++++|+++++++|+++++++|+++.++++. ....+...+.+++..|.+...
T Consensus 19 ~~~~~l~~il~~~~~gi~v~D~~---g~I~~~N~a~~~~~G~~~~eviG~~~~~~~p~-~~~~~~~~l~~vl~~G~~~~~ 94 (152)
T 3mxq_A 19 KSRLLLSELLDQLSFALCIVRND---YVIVKVNEYFESRVIFDGETMQGKNILELFPE-SADYLKRKIDTALVIESSSFS 94 (152)
T ss_dssp HHHHHHHHHHHHHCCEEEEEETT---SBEEEECHHHHHTSSSCHHHHTTSBHHHHSGG-GHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEcCC---CEEEEECHHHHHHHCcCHHHHCCCCHHHhcCC-hHHHHHHHHHHHHhcCCceee
Confidence 45567899999999999999999 99999999999999999999999998888776 445556667788877754322
Q ss_pred E---------EE---EEecCCCEEEEEEEEEEeecCCCCceEEEEEEEeccCcchhh
Q 020523 95 N---------LL---NYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (325)
Q Consensus 95 e---------~~---~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~~ 139 (325)
. +. ....+|...|..+++.|+.+ .+|.+.+++.+++|||+++.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~Pl~d-~~G~v~gv~~ii~DVTe~~~a 150 (152)
T 3mxq_A 95 SWEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHS-EDGTIEHVCLCVYDVTIQASQ 150 (152)
T ss_dssp ECCSSSCSSCC----------CCEEEEEEEEEEEC-TTSCEEEEEEEEEEEECC---
T ss_pred ecccccccccccccCCCCCCCcEEEEEEEEEEEEC-CCCCEEEEEEEEEECCHHHhc
Confidence 1 11 12245677888999999999 899999999999999999875
No 23
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=99.64 E-value=1.1e-15 Score=109.18 Aligned_cols=111 Identities=9% Similarity=0.058 Sum_probs=94.5
Q ss_pred CCCeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCC-CCcccCCCCChHHHHHHHHHHHhCCCeEEEEEEEecCCCE
Q 020523 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN-GRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTP 105 (325)
Q Consensus 27 ~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~ 105 (325)
+++++|.+|.. ++.+.++|+++++++||+++++.|.. +..+++|++...+...+...+..+..+..++++.+++|..
T Consensus 2 a~~giw~~d~~--~~~~~~~n~~~~~l~G~~~~e~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~ 79 (115)
T 3h9w_A 2 TKAIPWKINWQ--TMAFEYIGPQIEALLGWPQGSWKSVEDWATRMHPEDQEWVVNFCVKQSECGVDHEADYRALHRDGHY 79 (115)
T ss_dssp -CCEEEEEETT--TTEEEEECTHHHHHHCSCGGGCCBHHHHHHSBCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTTSCE
T ss_pred cceEEEEEEcC--CCcEEEEChhHHHHhCCChHHccCHHHHHHhcCHHHHHHHHHHHHHHHhcCCcccEEEEEEcCCCCE
Confidence 56799999943 28889999999999999999998832 3456778877777778888888888888999999999999
Q ss_pred EEEEEEEEEeecCCCCceEEEEEEEeccCcchhhh
Q 020523 106 FWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140 (325)
Q Consensus 106 ~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~~~ 140 (325)
+|+...+.|+.+ ++|.+.+++|+..|||++|.+|
T Consensus 80 ~w~~~~~~~~~d-~~G~~~~~~G~~~Dit~~k~~~ 113 (115)
T 3h9w_A 80 VWIRDVVHVVRD-DSGEVEALIGFMFDISLEHHHH 113 (115)
T ss_dssp EEEEEEEEEEEC-TTSCEEEEEEEEEECGGGGC--
T ss_pred EEEEEEEEEEEC-CCCCEEEEEEEEeccCcccccc
Confidence 999999999998 8999999999999999999863
No 24
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=99.63 E-value=6e-15 Score=106.08 Aligned_cols=111 Identities=20% Similarity=0.254 Sum_probs=78.6
Q ss_pred CCCeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCCC----eEEEEEEEecC
Q 020523 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP----IEVNLLNYKKD 102 (325)
Q Consensus 27 ~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~e~~~~~~d 102 (325)
++++++++|.+ |.++++|+++++++||++++++|+++..++++.........+......+.. ...++...++|
T Consensus 2 ~~d~i~~~d~~---g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 78 (119)
T 2vv6_A 2 IPDAMIVIDGH---GIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVTGKRRD 78 (119)
T ss_dssp CCCEEEEEETT---SBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTTCEEEEEECTT
T ss_pred CcceEEEECCC---CeEEEEhHHHHHHhCCCHHHHcCCCHHHhCCchHHHHHHHHHHHHhcCCCcccCCCceEEEEEeCC
Confidence 67899999999 999999999999999999999999987776654433323333333333332 23566778999
Q ss_pred CCEEEEEEEEEEeecCCCCceEEEEEEEeccCcchhhhhcc
Q 020523 103 GTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (325)
Q Consensus 103 g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~~~~~~ 143 (325)
|..+|+.+++.|+.+ . + ..+++++++|||++|++|+++
T Consensus 79 G~~~~~~~~~~~~~~-~-~-~~~~~~~~~DITerk~~e~~l 116 (119)
T 2vv6_A 79 GTTFPMHLSIGEMQS-G-G-EPYFTGFVRDLTEHQQTQARL 116 (119)
T ss_dssp SCEEEEEEEEEEEEE-T-T-EEEEEEEEEECC---------
T ss_pred CCEEEEEEEEEEEEE-C-C-eEEEEEEEEEcHHHHHHHHHH
Confidence 999999999999976 3 3 346889999999999985544
No 25
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=99.62 E-value=8.1e-15 Score=103.91 Aligned_cols=112 Identities=15% Similarity=0.182 Sum_probs=90.9
Q ss_pred HHHHHHHhhCCCeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCCCeEEEEE
Q 020523 18 LWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLL 97 (325)
Q Consensus 18 ~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 97 (325)
++++.++++++.+++++|.+ +.++++|+++++++|+++++++|+++..++ |.+.......+..++.++.....+..
T Consensus 3 ~~~~~~~~~~~~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (114)
T 3luq_A 3 ERLRLFTEHAPAALAMFDRE---MRYLAVSRRWREDYGLGDGDILGMSHYDIF-PEIGEEWKSVHRRGLAGEVIRVEEDC 78 (114)
T ss_dssp HHHHHHHHTCSSEEEEEETT---CBEEEECHHHHHHTTCCSSCCTTCBHHHHC-TTCCHHHHHHHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHhcCCceEEEEcCC---cEEEEECHHHHHHHCCCHHHHcCCcHHHHC-CccHHHHHHHHHHHhcCCcceeeeeE
Confidence 46788999999999999999 999999999999999999999999977776 55555555555555543333333336
Q ss_pred EEecCCCEEEEEEEEEEeecCCCCceEEEEEEEeccC
Q 020523 98 NYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (325)
Q Consensus 98 ~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 134 (325)
...++|..+|+.++..|+.+ .+|.+.+++++.+|||
T Consensus 79 ~~~~~g~~~~~~~~~~p~~~-~~g~~~~~~~~~~DIT 114 (114)
T 3luq_A 79 FVRADGRTQWLRWEVRPWYE-GEGRVGGVVIFTEDIT 114 (114)
T ss_dssp EEC--CCEEEEEEEEEEEEC-TTSCEEEEEEEEEECC
T ss_pred EEcCCCcEEEEEEEEEEeEC-CCCCEEEEEEEEeeCC
Confidence 77889999999999999998 8999999999999998
No 26
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=99.62 E-value=2.3e-14 Score=102.78 Aligned_cols=110 Identities=10% Similarity=0.123 Sum_probs=86.6
Q ss_pred hHHHHHHHHHhhCCCeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCCCeEE
Q 020523 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (325)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (325)
.++.+|+.++++++++++++|.+ |.++++|+++++++||++++++|+++..+.++.... ........+..+..+..
T Consensus 8 ~se~~~~~l~e~~~d~i~~~d~~---g~i~~vN~a~~~l~Gy~~~el~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 83 (117)
T 2r78_A 8 FQSNAYRALFEHAIDGIFIMDAE---GHYLDVNPAICSAIGYTRDEFLALDWGVLSRGVDSG-WAAASLARIVGGEPLRE 83 (117)
T ss_dssp HHHHHHHHHHHHCSSEEEEECTT---SBEEEECHHHHHHHCCCHHHHTTCBTTTTTTCSTTS-HHHHHHHHHHTTCCEEE
T ss_pred HhHHHHHHHHhcCCceEEEECCC---CCEEEecHHHHHHHCcCHHHHcCCCHHHhCCccchh-HHHHHHHHHHcCCcEEE
Confidence 45678999999999999999999 999999999999999999999999876654433322 22233445556667778
Q ss_pred EEEEEecCCCEEEEEEEEEEeecCCCCceEEEEEEEeccC
Q 020523 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (325)
Q Consensus 95 e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 134 (325)
+....++||..+|+.++..|+.+ |. ++++++|||
T Consensus 84 e~~~~~kdG~~~~v~~~~~~~~~---g~---~~~i~~DIT 117 (117)
T 2r78_A 84 ERTVWTRNGDQLTVELSAHLLPD---GK---ILGIARDVS 117 (117)
T ss_dssp EEEEECTTSCEEEEEEEEEECTT---SC---EEEEEEC--
T ss_pred EEEEEecCCCEEEEEEEEEEecC---Ce---EEEEEEeCC
Confidence 88889999999999999998853 44 578889997
No 27
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.61 E-value=1.4e-14 Score=123.56 Aligned_cols=116 Identities=39% Similarity=0.744 Sum_probs=106.1
Q ss_pred HHHhhCCCeEEEEcC---CCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCCCeEEEEEE
Q 020523 22 EALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLN 98 (325)
Q Consensus 22 ~~~~~~~~~i~~~d~---~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 98 (325)
.+++.++++++++|. + |.++++|+++++++||++++++|+++..+.++.+.......+...+..+..+..+...
T Consensus 15 ~~~~~~~~~i~~~D~~~~~---g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 91 (332)
T 2wkq_A 15 TTLERIEKNFVITDPRLPD---NPIIFASDSFLQLTEYSREEILGRNARFLQGPETDRATVRKIRDAIDNQTEVTVQLIN 91 (332)
T ss_dssp CCGGGCCSEEEEECTTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred hHhhcCCCcEEEecCCCCC---CCEEEeehHHHHHhCCCHHHHcCCCchhhcCCCCCHHHHHHHHHHHHcCCeeEEEEEE
Confidence 468899999999999 8 9999999999999999999999999888888777777777888888888888899999
Q ss_pred EecCCCEEEEEEEEEEeecCCCCceEEEEEEEeccCcchhhhh
Q 020523 99 YKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141 (325)
Q Consensus 99 ~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~~~~ 141 (325)
.+++|..+|+.+++.|+.+ .+|.+.+++++.+|||+++++++
T Consensus 92 ~~~dG~~~~~~~~~~pi~d-~~g~~~~~v~~~~DITe~k~~e~ 133 (332)
T 2wkq_A 92 YTKSGKKFWNLFHLQPMRD-QKGDVQYFIGVQLDGTEHVRDAA 133 (332)
T ss_dssp ECTTCCEEEEEEEEEEEEC-TTSCEEEEEEEEEEESSCCCHHH
T ss_pred EcCCCCEEEEeeEEEEeEc-CCCCEEEEEEEeccCchhhhhhh
Confidence 9999999999999999998 88999999999999999998643
No 28
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=99.60 E-value=1.4e-14 Score=109.46 Aligned_cols=119 Identities=12% Similarity=0.100 Sum_probs=98.1
Q ss_pred hHHHHHHHHHhhCCCeEEEEc-CCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCCCeE
Q 020523 15 RYTLWVHEALDELPDSFTITD-PSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIE 93 (325)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d-~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 93 (325)
....+|+.++++++.+++++| .+ +.++++|++++.++|++ +++|+++..++++.........+.+++..+.+..
T Consensus 14 ~~~~~~~~~~~~~~~~i~~~d~~~---~~i~~~N~~~~~~~g~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 88 (158)
T 3k3c_A 14 GAAEDVRRIFEHIPAILVGLEGPD---HRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQS 88 (158)
T ss_dssp CCHHHHHHHHHHCSSEEEEEETTT---TEEEEECHHHHHHCTTC--CSTTSBHHHHSGGGGGTTHHHHHHHHHHHCCCEE
T ss_pred HHHHHHHHHHhcCCceEEEEECCC---cEeHHHHHHHHHHcCCc--hhcCCcHHHhCCchhHHHHHHHHHHHHHhCCccc
Confidence 345688999999999999999 99 99999999999999999 8899998777776655556667777887777654
Q ss_pred EEEE-E--Ee-cC-CCEEEEEEEEEEeecCCCCceEEEEEEEeccCcchhh
Q 020523 94 VNLL-N--YK-KD-GTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (325)
Q Consensus 94 ~e~~-~--~~-~d-g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~~ 139 (325)
.... . .. .+ |..+|+.++..|+.+ .+|.+.+++++++|||++|++
T Consensus 89 ~~~~~~~~~~~~~~g~~~~~~~~~~pi~~-~~g~~~g~~~~~~DITe~k~~ 138 (158)
T 3k3c_A 89 GSEWRLQTDYDGSGVEERYFDFVVTPRRR-ADGSIEGVQLIVDDVTSRVRA 138 (158)
T ss_dssp EEEEEEEEESSSSCEEEEEEEEEEEEEEC-TTSCEEEEEEEEEECHHHHHH
T ss_pred ccceeEEeccCCCCcceEEEEEEEEEeEC-CCCCEEEEEEEEEehhHHHHH
Confidence 4322 2 22 22 677899999999998 899999999999999999996
No 29
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=99.59 E-value=5.6e-14 Score=113.17 Aligned_cols=111 Identities=20% Similarity=0.465 Sum_probs=102.3
Q ss_pred HHHHHHHhhCCCeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCCCeEEEEE
Q 020523 18 LWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLL 97 (325)
Q Consensus 18 ~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 97 (325)
..+..++++++++++++|.+ |.++++|++|++++||++++++|+++..+.++.........+++.+..+..+..++.
T Consensus 111 ~~~~~~~~~~~~~i~~~d~~---g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 187 (227)
T 3ewk_A 111 ARLKQAMDANSEMILLTDRA---GRIIYANPALCRFSGMAEGELLGQSPSILDSPLADQETLAAMQEALQAGQPWSGRLL 187 (227)
T ss_dssp HHHHHHHHTCCSEEEEECTT---SCEEEECHHHHHHHTCCTHHHHSSCGGGGBCTTSCHHHHHHHHHHHHHTCCEECCEE
T ss_pred HHHHHHHhcCcCeEEEEcCC---CcEEEEchHHHHHhCCCHHHHcCCChhhccCCCCCHHHHHHHHHHHHcCCceeEEEE
Confidence 46778999999999999999 999999999999999999999999988888888888888888899999999999988
Q ss_pred EEecCCC------EEEEEEEEEEeecCCCCceEEEEEEEec
Q 020523 98 NYKKDGT------PFWMLFKMSLVFGKEDGRATHFVAVQVP 132 (325)
Q Consensus 98 ~~~~dg~------~~~~~~~~~~~~~~~~g~~~~~~~~~~D 132 (325)
.++++|. .+|+.+++.|+++ .+|.+.+++++.+|
T Consensus 188 ~~~k~G~~~~dg~~~~~~~~~~pi~d-~~g~~~~~v~i~~D 227 (227)
T 3ewk_A 188 NRRRTGPAPHDAEDYWAEISTTPIHT-DGNGLVGYVQIQHD 227 (227)
T ss_dssp EEEECCSSSSCEEEEEEEEEEEEEEC-SSSCEEEEEEEEEC
T ss_pred EECCCCCcCcccceEEEEEEEEEEEC-CCCCEEEEEEEecC
Confidence 8899887 8999999999998 89999999999887
No 30
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=99.58 E-value=6.7e-15 Score=105.18 Aligned_cols=114 Identities=10% Similarity=0.052 Sum_probs=101.5
Q ss_pred HHHHHHHHhhCCCeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCC--CcccCCCCChHHHHHHHHHHHhCCCeEE
Q 020523 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNG--RMFQGPRTNRRTIMEIREAIREERPIEV 94 (325)
Q Consensus 17 ~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (325)
.++|+.++++++.+++.+|.+ +.++++|+++++++||+++++.+... ..+++|++...+...+...+..+..+..
T Consensus 3 ~~~~~~l~~~~~~~i~~~d~~---~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~ 79 (118)
T 3icy_A 3 AEELQALVDNIPAAIYHLDVS---GQATIRFRPPAFLKTLVSEHAGTTRLNTLSMIHHDDRHMLSNAYSKLREAKHSLTL 79 (118)
T ss_dssp HHHHHHHHTTCCCCCEEECTT---SCEEECCCCCGGGGGGEEEETTEEEEGGGGGBCGGGHHHHHHHHHHHHHSCCEEEE
T ss_pred HHHHHHHHhcCCceEEEEEcC---CCceEEechhHhhcCCCHHHccCChhHHHHHcCHHHHHHHHHHHHHHHhcCCCceE
Confidence 457899999999999999999 99999999999999999999877653 4567888777777777887788888888
Q ss_pred EEEEEecCCCEEEEEEEEEEeecCCCCceEEEEEEEeccC
Q 020523 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (325)
Q Consensus 95 e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 134 (325)
++++.+++|..+|+.....|+.+ .+|.+.+++++.+|||
T Consensus 80 e~r~~~~~g~~~w~~~~~~~~~~-~~g~~~~~~g~~~DIT 118 (118)
T 3icy_A 80 VYRIVTPEGKLHWIEDHMRSSFS-DDGLFSGIDGILCEVT 118 (118)
T ss_dssp EEEEECTTCCEEEEEEEEEEEEC-TTSCEEEEEEEEEECC
T ss_pred EEEEECCCCCEEEEEEEEEEEEC-CCCCEEEEEEEEEecC
Confidence 99999999999999999999998 8899999999999998
No 31
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=99.57 E-value=2.3e-14 Score=111.57 Aligned_cols=122 Identities=12% Similarity=0.121 Sum_probs=98.4
Q ss_pred hHHHHHHHHHhhCCCeEEEEc-CCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCCCeE
Q 020523 15 RYTLWVHEALDELPDSFTITD-PSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIE 93 (325)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d-~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 93 (325)
+...+|+.++++++++++++| .+ +.++++|++++.++|++ +++|+++..++++.........+..++..+....
T Consensus 34 ~~~~~l~~l~~~~~~~i~~~d~~~---g~i~~~N~a~~~l~G~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 108 (185)
T 3kx0_X 34 GAAEDVRRIFEHIPAILVGLEGPD---HRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQS 108 (185)
T ss_dssp CCHHHHHHHHHHCSSEEEEEETTT---TEEEEECHHHHHHCCCC--SCTTSBHHHHCTTSCSSSSHHHHHHHHHHCCCEE
T ss_pred hhHHHHHHHHhcCCceEEEEECCC---cEEEEEcHHHHHHcCCc--cccCCcHHHHCCchhhhhHHHHHHHHHHcCCccc
Confidence 356689999999999999999 99 99999999999999999 8999998888777665555566777777777655
Q ss_pred EE-EEE--Eec-C-CCEEEEEEEEEEeecCCCCceEEEEEEEeccCcchhhhhc
Q 020523 94 VN-LLN--YKK-D-GTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142 (325)
Q Consensus 94 ~e-~~~--~~~-d-g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~~~~~ 142 (325)
.+ ... ..+ + |..+|+.++..|+.+ .+|.+.+++++++|||++|+++++
T Consensus 109 ~~~~~~~~~~~~~gg~~~~~~~~~~pi~~-~~g~~~g~~~~~~DITerk~~e~~ 161 (185)
T 3kx0_X 109 GSEWRLQTDYDGSGVEERYFDFVVTPRRR-ADGSIEGVQLIVDDVTSRVRARQA 161 (185)
T ss_dssp EEEEEEC--------CCEEEEEEEEEEEC-TTSCEEEEEEEEEECHHHHTTCC-
T ss_pred ccceeEEeeccCCCCccEEEEEEEEEEEC-CCCCEEEEEEEEEeCCHHHHHHHH
Confidence 43 222 111 2 778999999999998 899999999999999999998666
No 32
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=99.57 E-value=5.2e-15 Score=104.77 Aligned_cols=75 Identities=37% Similarity=0.757 Sum_probs=64.1
Q ss_pred cCCceEEecCCCCCCCeEEEehhhHHhhCCCcccccccccccccCCCCChHHHHHHHH----------hhccccCCCcee
Q 020523 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSI----------AISPYPKKKSIY 319 (325)
Q Consensus 250 ~~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~----------e~~~~~kdG~~~ 319 (325)
++++|+++|.+.+||+|+|+|++|++|+||+++|++|+++..+.+|......+..+++ +++.++|||+.+
T Consensus 2 ~~~~i~i~d~~~~~g~i~~~N~a~~~l~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~ 81 (109)
T 1n9l_A 2 LRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQKIRDAIKKGEACSVRLLNYRKDGTPF 81 (109)
T ss_dssp CSCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEE
T ss_pred CccEEEEEcCCCCCCeEEEEchHHHHHHCcCHHHHcCCCchhcCCCCCCHHHHHHHHHHHHcCCcEEEEEEEEcCCCCEE
Confidence 5789999997655799999999999999999999999999888888777666555554 677889999999
Q ss_pred eEEee
Q 020523 320 MEYVR 324 (325)
Q Consensus 320 ~~~~~ 324 (325)
|++++
T Consensus 82 ~~~~~ 86 (109)
T 1n9l_A 82 WNLLT 86 (109)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99875
No 33
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=99.56 E-value=6.9e-14 Score=103.16 Aligned_cols=116 Identities=39% Similarity=0.742 Sum_probs=103.9
Q ss_pred HHHHHhhCCCeEEEEcC---CCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCCCeEEEE
Q 020523 20 VHEALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNL 96 (325)
Q Consensus 20 ~~~~~~~~~~~i~~~d~---~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~ 96 (325)
+..+++.++.+++++|. + +.++++|++++.++|++.++++|+++..+.++.........+...+..+..+..+.
T Consensus 4 l~~~~~~~~~~i~~~d~~~~~---~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (146)
T 2v0u_A 4 LATTLERIEKNFVITDPRLPD---NPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKIRDAIDNQTEVTVQL 80 (146)
T ss_dssp CCCTGGGSSSCEEEECTTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHhcCCCcEEEEcCCCCC---ceEEEEcHHHHHHHCcCHHHHcCCCHHHhcCCcCChHHHHHHHHHHhcCCCcceEE
Confidence 34578999999999999 8 99999999999999999999999998888777777777777788888888888888
Q ss_pred EEEecCCCEEEEEEEEEEeecCCCCceEEEEEEEeccCcchhh
Q 020523 97 LNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (325)
Q Consensus 97 ~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~~ 139 (325)
....++|..+|+.++..|+.+ .+|.+.+++++.+|||++++.
T Consensus 81 ~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~Dit~~~~~ 122 (146)
T 2v0u_A 81 INYTKSGKKFWNLFHLQPMRD-QKGDVQYFIGVQLDGTEHVRD 122 (146)
T ss_dssp EEECTTCCEEEEEEEEEEEEC-TTSCEEEEEEEEEEESSCCCH
T ss_pred EEEecCCcEEEEEEEEEEeEC-CCCCEEEEEEEEeechHHHHH
Confidence 888999999999999999998 889999999999999999874
No 34
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=99.56 E-value=6.2e-14 Score=100.83 Aligned_cols=112 Identities=11% Similarity=0.085 Sum_probs=93.9
Q ss_pred HHHhhCCCeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCC-CeEEEEEEEe
Q 020523 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER-PIEVNLLNYK 100 (325)
Q Consensus 22 ~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~ 100 (325)
.++++++++++++|.+ |.++++|+++++++||++++++|+++..+++|++.......+.+.+..+. ....+++..+
T Consensus 7 ~~~~~~~~~i~~~d~~---g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~~e~r~~~ 83 (121)
T 2kdk_A 7 EINVKPTEFITRFAVN---GKFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHNNLTDKHKAVLQSKEKILTDSYKFRA 83 (121)
T ss_dssp CCCCCSSEEEEEECTT---SBEEEECTHHHHHTCCCTTTSBTSBTTTTBCSSSHHHHHHHHHHHHTSSSCEEEEEEEEEC
T ss_pred ccccCCccEEEEECCC---eeEEEEChhHHHHHCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhCCCCCccEEEEEEE
Confidence 4677889999999999 99999999999999999999999998888888877666666666665433 3567888899
Q ss_pred cCCCEEEEEEEEEEeecCCC-CceEEEEEEEeccCcch
Q 020523 101 KDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPIVSRK 137 (325)
Q Consensus 101 ~dg~~~~~~~~~~~~~~~~~-g~~~~~~~~~~DITe~k 137 (325)
++|..+|+.++..|+.+ .. +.+..++++.+||++.+
T Consensus 84 ~dG~~~~~~~~~~~~~d-~~~~~~~~~v~~~~~i~~~~ 120 (121)
T 2kdk_A 84 KDGSFVTLKSQWFSFTN-PDTKELEYIVSVNTLVLGHS 120 (121)
T ss_dssp SSSCEEEEEEEEEEEEC-CSSSCEEEEEEEEECCSSCC
T ss_pred cCCCEEEEEEEEEEEEC-CCCCeeeEEEEEEEeccccC
Confidence 99999999999999987 54 56677889999999865
No 35
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=99.53 E-value=2.9e-14 Score=102.64 Aligned_cols=81 Identities=22% Similarity=0.328 Sum_probs=68.6
Q ss_pred hhhHhhhhccCCceEEecCCCCCCCeEEEehhhHHhhCCCcccccccccccccCCCCChHHHHHHHH----------hhc
Q 020523 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSI----------AIS 310 (325)
Q Consensus 241 ~~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~----------e~~ 310 (325)
..++.++++++++|+++|. +|+|+|+|++|++++||+++|++|+++..+.++.........+.+ ++.
T Consensus 5 ~~~~~~~~~~~~~i~~~d~---~g~i~~~N~a~~~~~G~~~~elig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 81 (120)
T 2gj3_A 5 EIFRQTVEHAPIAISITDL---KANILYANRAFRTITGYGSEEVLGKNESILSNGTTPRLVYQALWGRLAQKKPWSGVLV 81 (120)
T ss_dssp HHHHHHHHHCSSEEEEECT---TCBEEEECHHHHHHHCCCTTGGGGCBGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHhCCCeEEEECC---CCCEEeehHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCCEEEEEE
Confidence 4578899999999999998 479999999999999999999999999988877766555544443 566
Q ss_pred cccCCCceeeEEee
Q 020523 311 PYPKKKSIYMEYVR 324 (325)
Q Consensus 311 ~~~kdG~~~~~~~~ 324 (325)
.++|||+.+|++++
T Consensus 82 ~~~~dG~~~~~~~~ 95 (120)
T 2gj3_A 82 NRRKDKTLYLAELT 95 (120)
T ss_dssp EECTTSCEEEEEEE
T ss_pred EEcCCCCEEEEEEE
Confidence 78899999998765
No 36
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=99.53 E-value=1.2e-13 Score=115.67 Aligned_cols=61 Identities=10% Similarity=0.044 Sum_probs=52.4
Q ss_pred CCCeEEEehhhHHhhCCCcccccccccccccCCCCChHHHHHHHH------------hhccccCCCceeeEEe
Q 020523 263 DMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSI------------AISPYPKKKSIYMEYV 323 (325)
Q Consensus 263 dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~------------e~~~~~kdG~~~~~~~ 323 (325)
||+++|+|+++..++||+++|++|+++.++++|++.....+.+.+ ++++++|||+.+|++.
T Consensus 185 dG~~~yvd~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~vwvet 257 (320)
T 4dj2_A 185 SCLFQDVDERAAPLLGYLPQDLLGAPVLLFLHPEDRPLMLAIHKKILQLAGQPFDHSPIRFCARNGEYVTMDT 257 (320)
T ss_dssp TCBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHTTSSSCCEECCCEEEECSSSCEEEEEC
T ss_pred CceEEEcCcceeccCCcChHHHcCCcHHHhCCHHHHHHHHHHHHHHHhcCCCcccceEEEEEccCCCEEEEEE
Confidence 799999999999999999999999999999999987766554443 5566789999999864
No 37
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=99.52 E-value=2e-14 Score=103.14 Aligned_cols=85 Identities=12% Similarity=0.112 Sum_probs=66.4
Q ss_pred ccchhhhHhhhhccCCceEEecCCCCCCCeEEEehhhHHhhCCCcccccccccccccCCCCChH---HHHHHHH------
Q 020523 237 GFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTT---VLYQVSI------ 307 (325)
Q Consensus 237 ~~~~~~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~---~~~~~~~------ 307 (325)
...+..++.++++++++|+++|. +|+|+++|+++++|+||+++|++|+++..+.++..... ....+..
T Consensus 7 ~~se~~~~~l~e~~~d~i~~~d~---~g~i~~vN~a~~~l~Gy~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (117)
T 2r78_A 7 YFQSNAYRALFEHAIDGIFIMDA---EGHYLDVNPAICSAIGYTRDEFLALDWGVLSRGVDSGWAAASLARIVGGEPLRE 83 (117)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECT---TSBEEEECHHHHHHHCCCHHHHTTCBTTTTTTCSTTSHHHHHHHHHHTTCCEEE
T ss_pred HHhHHHHHHHHhcCCceEEEECC---CCCEEEecHHHHHHHCcCHHHHcCCCHHHhCCccchhHHHHHHHHHHcCCcEEE
Confidence 34456788999999999999998 47999999999999999999999999877654433221 2222222
Q ss_pred hhccccCCCceeeEEee
Q 020523 308 AISPYPKKKSIYMEYVR 324 (325)
Q Consensus 308 e~~~~~kdG~~~~~~~~ 324 (325)
|.+.++|||+.+|++++
T Consensus 84 e~~~~~kdG~~~~v~~~ 100 (117)
T 2r78_A 84 ERTVWTRNGDQLTVELS 100 (117)
T ss_dssp EEEEECTTSCEEEEEEE
T ss_pred EEEEEecCCCEEEEEEE
Confidence 66778999999999875
No 38
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=99.52 E-value=7.6e-14 Score=100.77 Aligned_cols=116 Identities=12% Similarity=0.112 Sum_probs=88.2
Q ss_pred HHHHhhCCCeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCCCeEEEEEEEe
Q 020523 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYK 100 (325)
Q Consensus 21 ~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 100 (325)
+.+++.++++++++|.+ |.++++|+++++++|++.++++|+++..++++.+.......+.....++.. ..+.....
T Consensus 2 ~~l~~~~~~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 77 (126)
T 3mjq_A 2 KNFLETIEDMILIINRE---GRLLYANTAVPKKLGYTHEELMSMHILTITSAGKMAEGEKILAELFAGKKE-SLPLSLEK 77 (126)
T ss_dssp CTTGGGCSSEEEEEETT---SBEEEECTHHHHHHSCCHHHHHHSBHHHHHCTTCHHHHHHHHHHHHHTCCS-EEEEEEEC
T ss_pred hhHHhhCCceEEEEeCC---CcEEEEcHHHHHHHCCCHHHHcCCCHHHHcCchhHHHHHHHHHHHHhCCCc-eeEEEEEc
Confidence 45789999999999999 999999999999999999999999887787776665555555555555544 67777888
Q ss_pred cCCCEEEEEEEEEEeecCCCCceEEEEEEEeccCcchhhhhcc
Q 020523 101 KDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (325)
Q Consensus 101 ~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~~~~~~ 143 (325)
++|..+|+.+...|... +...+++++++|||++++++++.
T Consensus 78 ~~g~~~~~~~~~~~~~~---~~~~~~~~~~~DITe~k~a~~~~ 117 (126)
T 3mjq_A 78 KEGTSIPAKARIWQGKW---HNEPCLFAIIKDLSKEERASSPP 117 (126)
T ss_dssp TTSCEEEEEEEEEEEES---SSSEEEEEEEEECC---------
T ss_pred cCCCEEEEEEEEEeeeE---CCceEEEEEEEechHHHHhhccc
Confidence 99999999999887754 33567899999999999985443
No 39
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=99.52 E-value=3.3e-13 Score=96.21 Aligned_cols=108 Identities=10% Similarity=0.117 Sum_probs=86.0
Q ss_pred HHHHHHHHHhhCCCeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCCCeEEE
Q 020523 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVN 95 (325)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 95 (325)
...+++.++++++++++++|.+ |.++++|+++++++||++++++|+++..+.++..... ...+..+.....+
T Consensus 11 ~~~~~~~~~~~~~~~i~~~d~~---g~i~~~N~~~~~l~G~~~~el~g~~~~~~~~~~~~~~-----~~~~~~~~~~~~e 82 (118)
T 3olo_A 11 EFKFAHYLINNAVEASFCLGDN---WQFLYVNDATCRMTEYSREQLLSMNLQDIDVDFALHD-----WEEIRQKNNYTFK 82 (118)
T ss_dssp HHHHHHHHHHHCSSEEEEECTT---SBEEEECHHHHHHHCCCHHHHTTCBGGGTBTTGGGSC-----HHHHHHHSEEEEE
T ss_pred HHHHHHHHHhcCCceEEEECCC---CcEEEEHHHHHHHHCCCHHHHhCCChhhcccccCHHH-----HHHHHhcCcEEEE
Confidence 3446788999999999999999 9999999999999999999999999877765432222 2233445566778
Q ss_pred EEEEecCCCEEEEEEEEEEeecCCCCceEEEEEEEeccC
Q 020523 96 LLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (325)
Q Consensus 96 ~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 134 (325)
....+++|..+|+.++..|+.. .+. .+++++++|||
T Consensus 83 ~~~~~~~g~~~~~~~~~~~~~~--~~~-~~~~~~~~DIT 118 (118)
T 3olo_A 83 TRYRSQSGRIFLVEMSLTFLED--QER-RFSCVFVREKS 118 (118)
T ss_dssp EEEECTTCCEEEEEEEEEEEEE--TTE-EEEEEEEEEC-
T ss_pred EEEEccCCCEEEEEEEEEEEEE--CCc-cEEEEEEEeCC
Confidence 8888999999999999999976 343 36778999997
No 40
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=99.52 E-value=7.1e-13 Score=110.82 Aligned_cols=62 Identities=8% Similarity=0.081 Sum_probs=52.8
Q ss_pred CCCCeEEEehhhHHhhCCCcccccccccccccCCCCChHHHHHHHH-------------hhccccCCCceeeEEe
Q 020523 262 PDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSI-------------AISPYPKKKSIYMEYV 323 (325)
Q Consensus 262 ~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~-------------e~~~~~kdG~~~~~~~ 323 (325)
.||+++|+|+++..++||+++|++|+++.++++|++.....+.+.+ ++++++|||+.+|++.
T Consensus 182 ~dG~~~yvs~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~~~~~f~s~~yR~~~kdG~~vwvet 256 (317)
T 4dj3_A 182 PGCVFLEVDERAVPLLGYLPQDLIGTSILTYLHPEDRPLMVAIHQKVLKYAGHPPFEHSPVRFCTQNGEYVILDS 256 (317)
T ss_dssp TTSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCTTTTTHHHHHHHHHHHTTTSCCEECCCEEEECTTSCEEEEEE
T ss_pred CCCeEEEEChHHhhhcCcChHHHcCCCHHHeECHHHHHHHHHHHHHHHHcCCCccccceEEEEEccCCCEEEEEE
Confidence 3799999999999999999999999999999999998776554433 3466789999999874
No 41
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=99.51 E-value=6e-13 Score=96.30 Aligned_cols=119 Identities=13% Similarity=0.170 Sum_probs=85.3
Q ss_pred hhHHhhhhhhHHHHHHHHHhhCCCeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhc--CCCCCcccCCCCChHHHHHHH
Q 020523 6 GLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEII--GRNGRMFQGPRTNRRTIMEIR 83 (325)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~--g~~~~~l~~~~~~~~~~~~~~ 83 (325)
...++++. .+..+|+.++++++++++++|.+ |.++++|+++++++||++++++ |++...+++ +.......+.
T Consensus 6 ~~~e~~L~-~~~~~~~~l~e~~~~~i~~~d~~---g~i~~~N~a~~~~~G~~~~el~g~g~~~~~~~~--~~~~~~~~~~ 79 (126)
T 3bwl_A 6 KRREKRLE-ETSSRLEALFENSPDMIDVLDAD---GTICEVNQRFCAELGYDESEVLGRSIWEFDLMF--DAEDVQTQLS 79 (126)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHCSSEEEEECTT---CBEEEECHHHHHHHTCCGGGTTTSBGGGTBTTC--CHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHhhCCcEEEEEcCC---CCEEEEcHHHHHHhCCCHHHHhhCCCchhhccC--CHHHHHHHHH
Confidence 44555565 66778999999999999999999 9999999999999999999994 565555554 2222211111
Q ss_pred HHHHhCCCeEEEEEEEecCCCEEEEEEEEEEeecCCCCceEEEEEEEeccC
Q 020523 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (325)
Q Consensus 84 ~~~~~~~~~~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 134 (325)
. ...+.....+..+.+++|..+|+.++..++.. +|.. .++++.+|||
T Consensus 80 ~-~~~~~~~~~e~~~~~~dG~~~~~~~~~~~~~~--~~~~-~~~~~~~DIT 126 (126)
T 3bwl_A 80 G-FSVDERRKFEGLYERRDGSTMSVEVHLLRFNL--EGED-RFLAISRDIT 126 (126)
T ss_dssp T-CCTTCEEEEEEEEECTTSCEEEEEEEEEEEEE--TTEE-EEEEEEEEC-
T ss_pred H-HhcCCCcceEEEEEeCCCCEEEEEEEeEEEec--CCcE-EEEEEEEeCC
Confidence 1 11223344566677899999999988888754 4544 5778899997
No 42
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=99.51 E-value=2.8e-14 Score=104.56 Aligned_cols=80 Identities=33% Similarity=0.704 Sum_probs=64.6
Q ss_pred hhhhccCCceEEecCCCCCCCeEEEehhhHHhhCCCcccccccccccccCCCCChHHHHHHHH----------hhccccC
Q 020523 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSI----------AISPYPK 314 (325)
Q Consensus 245 ~~~~~~~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~----------e~~~~~k 314 (325)
.++++++++|+++|.+++||+|+|+|++|++|+||+++|++|+++..+.+|.........+.+ +++.++|
T Consensus 3 ~~~~~~~~~i~~~d~~g~~~~i~~~N~a~~~~~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k 82 (132)
T 2pr5_A 3 HMLDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNIRTALQNKEPVTVQIQNYKK 82 (132)
T ss_dssp ---CCCCCEEEEECTTSTTCCEEEECHHHHHHHSCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECT
T ss_pred hHHhcCCCcEEEEeCCCCCCcEEEECHHHHHHhCcCHHHHcCCChhhhCCCCCCHHHHHHHHHHHHcCCCeEEEEEEEec
Confidence 468889999999998644569999999999999999999999999888877776655554443 5667889
Q ss_pred CCceeeEEee
Q 020523 315 KKSIYMEYVR 324 (325)
Q Consensus 315 dG~~~~~~~~ 324 (325)
||+.+|++++
T Consensus 83 dG~~~~~~~~ 92 (132)
T 2pr5_A 83 DGTMFWNELN 92 (132)
T ss_dssp TSCEEEEEEE
T ss_pred CCCeeeeEEE
Confidence 9999999865
No 43
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=99.51 E-value=1.1e-14 Score=103.23 Aligned_cols=76 Identities=13% Similarity=0.078 Sum_probs=62.8
Q ss_pred hhhccCCceEEecCCCCCCCeEEEehhhHHhhCCCcccccccccccccCCCCChHHHHHHHH-------hhccccCCCce
Q 020523 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSI-------AISPYPKKKSI 318 (325)
Q Consensus 246 ~~~~~~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~-------e~~~~~kdG~~ 318 (325)
++++++++|+++|. ||+|+|+|+++++++||+++|++|+++.++++|++.......+.. ++++++|||+.
T Consensus 4 lle~~~d~i~v~d~---~G~i~yvn~~~~~~lGy~~~el~G~~~~~~ihp~D~~~~~~~~~~~~~~~~~e~r~~~kdG~~ 80 (111)
T 2vlg_A 4 PLQTKTDIHAVLAS---NGRIIYISANSKLHLGYLQGEMIGSFLKTFLHEEDQFLVESYFYNEHHLMPCTFRFIKKDHTI 80 (111)
T ss_dssp -----CCEEEEECT---TSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHHCSCCSSCEEEEEECTTSCE
T ss_pred hhhcCCCEEEEEcC---CCeEEEEChHHHHHhCCCHHHHcCCcHHHeECHhHHHHHHHHHhccCCCccEEEEEEcCCCCE
Confidence 67888999999997 589999999999999999999999999999999988776665543 67778999999
Q ss_pred eeEEee
Q 020523 319 YMEYVR 324 (325)
Q Consensus 319 ~~~~~~ 324 (325)
+|++++
T Consensus 81 ~wve~~ 86 (111)
T 2vlg_A 81 VWVEAA 86 (111)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999875
No 44
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=99.51 E-value=1.5e-13 Score=98.50 Aligned_cols=116 Identities=9% Similarity=0.060 Sum_probs=95.1
Q ss_pred hHHHHHHHHHhhCCCeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCC--CCcccCCCCChHHHHHHHHHHHhCCCe
Q 020523 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN--GRMFQGPRTNRRTIMEIREAIREERPI 92 (325)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (325)
....+++.+++.++.+++++|.+ ++.++++|++++.++|++.+++.|.+ +..++++++...+...+.. +..+...
T Consensus 8 ~~~~~~~~~~~~~~~~i~~~d~~--~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 84 (125)
T 3eeh_A 8 KSERRVRELTEATNDILWEFTAD--LSEVLVINSAYEDIWGRSVAKLRENPHDFLNGIHPEDRELMKDTMQS-LMDGESA 84 (125)
T ss_dssp --CHHHHHHHSCCCCEEEEEETT--SSCEEEECTHHHHHHSSCHHHHHHCGGGGGGGBCHHHHHHHHHHHHH-HHTTCCE
T ss_pred HHHHHHHHHHhcCCceEEEEEcC--CCcEEEecHHHHHHHCCCHHHHccCcHHHHHhcCHHHHHHHHHHHHH-HHcCCCc
Confidence 45568899999999999999976 47899999999999999999999876 4445555554444444444 5566777
Q ss_pred EEEEEEEecCCCEEEEEEEEEEeecCCCCceEEEEEEEeccC
Q 020523 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (325)
Q Consensus 93 ~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 134 (325)
..++....++|..+|+.+...|+.+ .+|.+.+++++.+|||
T Consensus 85 ~~e~~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~DIT 125 (125)
T 3eeh_A 85 DVECRVNATEEYQRWVWIQGEPITN-DAGETVRVAGFARDIT 125 (125)
T ss_dssp EEEEEECGGGTTCEEEEEEEEEEEC-TTSCEEEEEEEEEECC
T ss_pred cEEEEEEcCCCCEEEEEEecEEEEC-CCCCEEEEEEEEEecC
Confidence 8888888899999999999999998 8999999999999997
No 45
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=99.50 E-value=9.9e-13 Score=95.91 Aligned_cols=115 Identities=26% Similarity=0.486 Sum_probs=96.8
Q ss_pred HHHHHHHhhCCCeEEEEcC---CCCCCCEEEecHHHHHhcCCChhhhcCCC--CCcccCCCCChHHHHHHHHHHHhCCCe
Q 020523 18 LWVHEALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRN--GRMFQGPRTNRRTIMEIREAIREERPI 92 (325)
Q Consensus 18 ~~~~~~~~~~~~~i~~~d~---~~~~~~i~~~N~~~~~~~G~~~~e~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (325)
..+...++.++.+++++|. + +.++++|+++++++|++.++++|++ ...+.++.........+...+..+..+
T Consensus 19 ~~~~~~~~~~~~~i~~~d~~~~~---g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (138)
T 2l0w_A 19 DTIIRKFEGQSRKFIIANARVEN---CAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIAQALLGAEER 95 (138)
T ss_dssp HHHHHHHTTTTSEEEEEESSSTT---CBEEEECSHHHHHHSCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHTTCSSCE
T ss_pred HHHHHHHhcCCCCEEEEecCCCC---CEEEEeCHHHHHHhCCCHHHHcCCCCcccccCCcccchhHHHHHHHHHhhcCCc
Confidence 3455667889999999999 8 9999999999999999999999998 455555555555556666667777777
Q ss_pred EEEEEEEecCCCEEEEEEEEEEeecCCCCceEEEEEEEeccCcc
Q 020523 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (325)
Q Consensus 93 ~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~ 136 (325)
..+.....++|..+|+.++..|+.+ .+|.+.+++++.+|||++
T Consensus 96 ~~~~~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~Dit~~ 138 (138)
T 2l0w_A 96 KVEIAFYRKDGSCFLCLVDVVPVKN-EDGAVIMFILNFEVVMEK 138 (138)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEEEEEEEEC
T ss_pred eeEEEEECCCCCEEEEEEEEEEEeC-CCCCEEEEEEEEEeccCC
Confidence 7788888899999999999999998 789999999999999975
No 46
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=99.49 E-value=3.7e-13 Score=112.20 Aligned_cols=62 Identities=10% Similarity=0.030 Sum_probs=52.2
Q ss_pred CCCCeEEEehhhHHhhCCCcccccccccccccCCCCChHHHHHHHH------------hhccccCCCceeeEEe
Q 020523 262 PDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSI------------AISPYPKKKSIYMEYV 323 (325)
Q Consensus 262 ~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~------------e~~~~~kdG~~~~~~~ 323 (325)
.||+++|+|+++..++||.++|++|+++.++++|++.....+.+.+ ++++++|||+.+|++.
T Consensus 173 ~dG~~~yvd~~~~~lLGY~peELig~s~~~~iHpdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~vwvet 246 (309)
T 3gdi_A 173 PNCLFQAVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQAGGQPFDYSPIRFRTRNGEYITLDT 246 (309)
T ss_dssp TTCBEEEECTTHHHHHSCCHHHHTTSBHHHHBCTTSHHHHHHHHHHHHHTTTCCEEEEEEEEECTTSCEEEEEE
T ss_pred CCCeEEEECcccccccCcCHHHHcCCCHHHhCCHHHHHHHHHHHHHHHhcCCceeeceEEEEEccCCCEEEEEE
Confidence 3799999999999999999999999999999999987655444433 3666789999999864
No 47
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=99.48 E-value=3e-14 Score=104.08 Aligned_cols=80 Identities=23% Similarity=0.181 Sum_probs=63.5
Q ss_pred hhHhhhhccCCceEEecCCCCCCCeEEEehhhHHhhCCCcccccccccccccCCCCChHHHHHH---HH-----------
Q 020523 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV---SI----------- 307 (325)
Q Consensus 242 ~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~---~~----------- 307 (325)
.++.++++++++|+++|. +|+|+++|+++++|+||+++|++|+++..+.+++........+ ..
T Consensus 17 ~~~~l~~~~~d~i~~~d~---~g~i~~~N~a~~~l~Gy~~~eliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (130)
T 1d06_A 17 HLRSILDTVPDATVVSAT---DGTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPYRHEHDGYLQRYMATGEKRIIGIDR 93 (130)
T ss_dssp CHHHHHTTCSSEEEEEET---TSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTSCE
T ss_pred HHHHHHhhCcCeEEEECC---CCeEEEEcHHHHHHHCCCHHHHcCCcHHHHCCchhHHHHHHHHHHHHhcCCccccCCee
Confidence 367789999999999998 4799999999999999999999999999888665433222222 11
Q ss_pred hhccccCCCceeeEEee
Q 020523 308 AISPYPKKKSIYMEYVR 324 (325)
Q Consensus 308 e~~~~~kdG~~~~~~~~ 324 (325)
++..++|||+.+|++++
T Consensus 94 e~~~~~kdG~~~~~~~~ 110 (130)
T 1d06_A 94 VVSGQRKDGSTFPMKLA 110 (130)
T ss_dssp EEEEECTTSCEEEEEEE
T ss_pred EEEEEeCCCCEEEEEEE
Confidence 34457899999999875
No 48
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=99.47 E-value=3.1e-12 Score=89.11 Aligned_cols=107 Identities=27% Similarity=0.520 Sum_probs=87.9
Q ss_pred CeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCC--CCcccCCCCChHHHHHHHHHHHhCCCeEEEEEEEecCCCEE
Q 020523 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN--GRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPF 106 (325)
Q Consensus 29 ~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~ 106 (325)
.+++++|....++.++++|+++++++|++.++++|++ ...+.++.........+...+..+.....+.....++|..+
T Consensus 2 ~~i~i~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (110)
T 1byw_A 2 RKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALLGAEERKVEIAFYRKDGSCF 81 (110)
T ss_dssp CEEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEE
T ss_pred CCEEEEeccCCCCcEEEECHHHHHHhCCCHHHHccCCCccccccCCcCCHHHHHHHHHHHhcCCCceEEEEEEcCCCCEE
Confidence 5788888632238999999999999999999999998 44455555555556666777777777888888888999999
Q ss_pred EEEEEEEEeecCCCCceEEEEEEEeccCcc
Q 020523 107 WMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (325)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~~~~~~~DITe~ 136 (325)
|+.++..|+.+ .+|.+.+++++.+|||++
T Consensus 82 ~~~~~~~~~~~-~~g~~~~~~~~~~DiTe~ 110 (110)
T 1byw_A 82 LCLVDVVPVKN-EDGAVIMFILNFEVVMEK 110 (110)
T ss_dssp EEEEEEEEEEC-TTCCEEEEEEEEEEEEEC
T ss_pred EEEEEEEEeec-CCCCEEEEEEEEEeccCC
Confidence 99999999998 789999999999999985
No 49
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=99.46 E-value=4e-13 Score=101.97 Aligned_cols=123 Identities=20% Similarity=0.244 Sum_probs=85.3
Q ss_pred hHHHHHHHHHhhCCCeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCCC---
Q 020523 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP--- 91 (325)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~--- 91 (325)
.....+..+++.++.+++++|.+ |.++++|++++.++|++.++++|+++..++++.........+......+..
T Consensus 37 ~~~~~~~~~l~~~~~~i~~~d~~---g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (167)
T 1v9y_A 37 AADGIFFPALEQNMMGAVLINEN---DEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVE 113 (167)
T ss_dssp ---CCHHHHHHTCSSEEEEECTT---SBEEEECHHHHHHHSCCGGGTTTSBGGGGSCGGGTTTHHHHHHHHHC-------
T ss_pred hhhHHHHHHHHhCCCCEEEECCC---CcEEEECHHHHHHhCCCHHHHcCCChhhccCccccchHHHHHHHHhhcCCCccc
Confidence 34457889999999999999999 999999999999999999999999887777665554444444444443322
Q ss_pred -eEEEEEEEecCCCEEEEEEEEEEeecCCCCceEEEEEEEeccCcchhhhhcc
Q 020523 92 -IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (325)
Q Consensus 92 -~~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~~~~~~ 143 (325)
+..+.....++|..+|+.+...|+. .+|.+ +++++++|||+++++++++
T Consensus 114 ~~~~~~~~~~~~g~~~~~~~~~~~~~--~~g~~-~~~~~~~DiT~~~~~e~~l 163 (167)
T 1v9y_A 114 GMSRELQLEKKDGSKIWTRFALSKVS--AEGKV-YYLALVRDASVEMAQKEQT 163 (167)
T ss_dssp ---CEEEEECTTSCEEEEEEEEEEEE--ETTEE-EEEEEEEC-----------
T ss_pred ccceEEEEEcCCCcEEEEEEEEEEEe--cCCCE-EEEEEEecCcHHHHHHHHH
Confidence 3446677788999999999999994 36666 4889999999999875443
No 50
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=99.45 E-value=1.3e-13 Score=99.22 Aligned_cols=78 Identities=8% Similarity=0.050 Sum_probs=66.3
Q ss_pred HhhhhccCCceEEecCCCCCCCeEEEehhhHHhhCCCcccccccccccccCCCCChHHHHHHHH-----------hhccc
Q 020523 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSI-----------AISPY 312 (325)
Q Consensus 244 ~~~~~~~~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~-----------e~~~~ 312 (325)
..+++++++.|++.|. ||+|+|+|+++++++||+++|++|+++.++++|++.......+.+ +++.+
T Consensus 5 ~ll~e~~~d~i~~~d~---~g~i~~~n~~~~~~~G~~~~el~g~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~~e~r~~ 81 (121)
T 3f1p_B 5 GLNVCQPTRFISRHNI---EGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFR 81 (121)
T ss_dssp ---CCCCCEEEEEECT---TSBEEEECTTHHHHHSCCGGGTTTSBGGGGBCTTTHHHHHHHHHHHTTSTTCCEEEEEEEE
T ss_pred cceecCCCceEEEECC---CceEEEECcchhhhhCCChHHHcCCCHHHeECHHHHHHHHHHHHHHHhcCCCcccEEEEEE
Confidence 3468889999999998 579999999999999999999999999999999988776665544 77778
Q ss_pred cCCCceeeEEee
Q 020523 313 PKKKSIYMEYVR 324 (325)
Q Consensus 313 ~kdG~~~~~~~~ 324 (325)
++||+.+|++.+
T Consensus 82 ~~dG~~~w~~~~ 93 (121)
T 3f1p_B 82 SKNQEWLWMRTS 93 (121)
T ss_dssp CTTSCEEEEEEE
T ss_pred ecCCCEEEEEEE
Confidence 999999999765
No 51
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=99.44 E-value=8e-14 Score=128.34 Aligned_cols=116 Identities=14% Similarity=0.103 Sum_probs=103.0
Q ss_pred HHHHHHhhCCCeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCCCeEEEEEE
Q 020523 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLN 98 (325)
Q Consensus 19 ~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 98 (325)
++..++++++++++++|.+ |++.++|+++++++||+.++.+|++.....++.+... ...+...+..+..+..++..
T Consensus 519 ~~~~lle~a~~~i~~~D~~---grI~~~N~a~~~l~G~s~~e~~g~~~l~~~~~~~~~~-~~~i~~~l~~g~~~~~E~~~ 594 (635)
T 4eho_A 519 QASSQVHASMQPVLITDAE---GRILLMNDSFRDMLPAGSPSAVHLDDLAGFFVESNDF-LRNVAELIDHGRGWRGEVLL 594 (635)
T ss_dssp SHHHHHHHCSSCCEEEETT---CCEEEECHHHHTTSCSSCCCCCSSGGGTTSSSSCTHH-HHHHHHHHHHCCCBCCCCEE
T ss_pred HHHHHHHhCCCcEEEECCC---CeEeeHHHHHHHHHCcChHHHcCcchhhccCCCCHHH-HHHHHHHHHcCCcEEEEEEE
Confidence 4677899999999999999 9999999999999999999999988666666666554 45566777788888889999
Q ss_pred EecCCCEEEEEEEEEEeecCCCCceEEEEEEEeccCcchhh
Q 020523 99 YKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (325)
Q Consensus 99 ~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~~ 139 (325)
.++||+.+|+.+++.|+++ .+|.+.|++++.+|||++|++
T Consensus 595 ~~~dG~~~~~~~~~~pv~d-~~G~v~g~v~i~~DITerK~a 634 (635)
T 4eho_A 595 RGAGNRPLPLAVRADPVTR-TEDQSLGFVLIFSDATDRRTA 634 (635)
T ss_dssp CCSSSSCEECCCCEEEECS-TTSSCCEEEECCCCCSSSCCC
T ss_pred EccCCcEEEEEEEEEEEEC-CCCCEEEEEEEEEeCchHhhC
Confidence 9999999999999999999 899999999999999999985
No 52
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=99.43 E-value=2.9e-12 Score=95.57 Aligned_cols=106 Identities=34% Similarity=0.562 Sum_probs=91.0
Q ss_pred HHHhhCCCeEEEEc---CCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCC-----------ChHHHHHHHHHHH
Q 020523 22 EALDELPDSFTITD---PSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT-----------NRRTIMEIREAIR 87 (325)
Q Consensus 22 ~~~~~~~~~i~~~d---~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~-----------~~~~~~~~~~~~~ 87 (325)
.+++.. .+++++| .+ |.++++|+++++++||+.++++|+++..+.++.. .......+...+.
T Consensus 30 ~~~~~~-~~i~~~d~~d~~---g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (149)
T 3d72_A 30 GPVDTS-VALILCDLKQKD---TPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPKSTRKYVDSNTINTMRKAID 105 (149)
T ss_dssp CSCCTT-SCEEEEETTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGGSTTSCCCTTCCCSSSCHHHHHHHHHHHH
T ss_pred HhhcCC-ccEEEEeccCCC---CcEEEECHHHHHHHCcCHHHHcCCChhHhCCccccccccccccccChHHHHHHHHHHH
Confidence 456664 8999999 68 9999999999999999999999999887777663 5555666777788
Q ss_pred hCCCeEEEEEEEecCCCEEEEEEEEEEeecCCCCceEEEEEEEec
Q 020523 88 EERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVP 132 (325)
Q Consensus 88 ~~~~~~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~D 132 (325)
.+..+..+....+++|..+|+.++..|+.+ .+|.+.+++++.+|
T Consensus 106 ~~~~~~~e~~~~~~dG~~~~~~~~~~~i~~-~~g~~~~~v~~~~D 149 (149)
T 3d72_A 106 RNAEVQVEVVNFKKNGQRFVNFLTMIPVRD-ETGEYRYSMGFQCE 149 (149)
T ss_dssp HTCCEEEEEEEECTTCCEEEEEEEEEEEEC-TTSSEEEEEEECCC
T ss_pred CCCceEEEEEEECCCCCEEEEEEEEEEEEc-CCCCEEEEEEEEeC
Confidence 888888888888999999999999999998 88999999998876
No 53
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=99.43 E-value=1.6e-12 Score=94.67 Aligned_cols=113 Identities=11% Similarity=0.065 Sum_probs=83.4
Q ss_pred HHHHHHHHhhCCCeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCC------
Q 020523 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER------ 90 (325)
Q Consensus 17 ~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~------ 90 (325)
...+..++++++++++++|.+ |.++++|+++++++||++++++|+++..++++.+.......+......+.
T Consensus 6 ~~~l~~i~~~~~d~i~~~D~~---g~I~~~N~aa~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (129)
T 3mfx_A 6 LETIELFIQHLTEAMILVNAN---GFIRSCNQRSAELLDCPQVSLKGQDWRNFLTEHHQARYDNLLSHDVQLGTNCGQPV 82 (129)
T ss_dssp HHHHHHHHTTCSSEEEEEETT---SBEEEECHHHHHHTTSCHHHHTTSBGGGGBCTTCCGGGGCTTC----------CCS
T ss_pred HHHHHHHHhcCCceEEEECCC---CEEEeEhHHHHHHHCcCHHHHcCCcHHHHcChHhHHHHHHHHHHHHhcCccccccc
Confidence 346888999999999999999 99999999999999999999999998888877654432211111111111
Q ss_pred -CeEEEEEEEecCCCEEEEEEEEEEeecCCCCceEEEEEEEeccCcc
Q 020523 91 -PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (325)
Q Consensus 91 -~~~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~ 136 (325)
....++...++||..+|+.++++|+.+ ++. .++++++|+...
T Consensus 83 ~~~~~E~~~~rkdG~~~~velsis~i~~--~~~--~~v~~~~~~~~~ 125 (129)
T 3mfx_A 83 QHPAQETTLICASGKAKDVELSISYIPG--HEP--MFVMVMHDLEHH 125 (129)
T ss_dssp CEEEEEEEEECTTSCEEEEEEEEEEECS--SSC--EEEEEEEEC---
T ss_pred CCCceEEEEEcCCCCEEEEEEEEEEecC--CCc--EEEEEEechhhh
Confidence 234678888999999999999999974 222 367888887543
No 54
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=99.41 E-value=1.1e-13 Score=100.83 Aligned_cols=82 Identities=6% Similarity=0.017 Sum_probs=65.9
Q ss_pred hhhHhhhhccCCceEEecCCCCCCCeEEEehhhHHhhCCCcccccccccccccCCCCChHHHHH---H----H-------
Q 020523 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQ---V----S------- 306 (325)
Q Consensus 241 ~~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~---~----~------- 306 (325)
..|..+++++++||+++|. +|+|+++|+++++|+||++++++|+++.++++++........ + .
T Consensus 7 ~~l~~i~~~~~d~i~~~D~---~g~I~~~N~aa~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (129)
T 3mfx_A 7 ETIELFIQHLTEAMILVNA---NGFIRSCNQRSAELLDCPQVSLKGQDWRNFLTEHHQARYDNLLSHDVQLGTNCGQPVQ 83 (129)
T ss_dssp HHHHHHHTTCSSEEEEEET---TSBEEEECHHHHHHTTSCHHHHTTSBGGGGBCTTCCGGGGCTTC----------CCSC
T ss_pred HHHHHHHhcCCceEEEECC---CCEEEeEhHHHHHHHCcCHHHHcCCcHHHHcChHhHHHHHHHHHHHHhcCcccccccC
Confidence 3477899999999999998 479999999999999999999999999999877654321110 0 0
Q ss_pred ---HhhccccCCCceeeEEeeC
Q 020523 307 ---IAISPYPKKKSIYMEYVRV 325 (325)
Q Consensus 307 ---~e~~~~~kdG~~~~~~~~~ 325 (325)
.|+..+++||+.+|+++++
T Consensus 84 ~~~~E~~~~rkdG~~~~velsi 105 (129)
T 3mfx_A 84 HPAQETTLICASGKAKDVELSI 105 (129)
T ss_dssp EEEEEEEEECTTSCEEEEEEEE
T ss_pred CCceEEEEEcCCCCEEEEEEEE
Confidence 1666788999999998863
No 55
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=99.41 E-value=5e-13 Score=96.38 Aligned_cols=108 Identities=10% Similarity=0.081 Sum_probs=74.3
Q ss_pred HHHHHHHHHhhCCCeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCCCeEEE
Q 020523 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVN 95 (325)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 95 (325)
...+++.+++.++++++++|.+ |.++++|+++++++|+++++++|+++..++++................+...
T Consensus 17 ~~~~~~~i~~~~~~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 90 (125)
T 3fc7_A 17 TRKKFESLVSDSPDGIVHLTTN---GTILSVNPSMAGRLGADPDTLVGQQLSAVMDSEAANQRLEAGKSAVENGTAT--- 90 (125)
T ss_dssp ---------CCSCCEEEEEETT---SBEEEECHHHHHHHTSCHHHHTTSBGGGSSCHHHHHHHHHHHHHHHHHTSCE---
T ss_pred HHHHHHHHHhcCCCeEEEEcCC---CeEEEECHHHHHHhCCCHHHHcCccHHHhCCHHHHHHHHHHHHHHhcCCCeE---
Confidence 5668899999999999999999 9999999999999999999999999887773222222222223444444433
Q ss_pred EEEEecCCC-EEEEEEEEEEeecCCCCceEEEEEEEeccC
Q 020523 96 LLNYKKDGT-PFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (325)
Q Consensus 96 ~~~~~~dg~-~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 134 (325)
...+|. ..|+.++..|+.+ +|...+++++++|||
T Consensus 91 ---~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~DIT 125 (125)
T 3fc7_A 91 ---RSEDAVGGRHYHNQYIPVDS--HRKSDTFQLVSRDIT 125 (125)
T ss_dssp ---EEEEEETTEEEEEEEEESST--TTTTTEEEEEEEECC
T ss_pred ---EeEcCCCcEEEEEEEEeEec--CCCeEEEEEEEecCC
Confidence 122344 6788999999876 566778999999997
No 56
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=99.39 E-value=7.1e-13 Score=101.97 Aligned_cols=84 Identities=25% Similarity=0.505 Sum_probs=71.8
Q ss_pred hhhHhhhhccCCceEEecCCCCCCCeEEEehhhHHhhCCCcccccccccccccCCCCChHHHHHHHH----------hhc
Q 020523 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSI----------AIS 310 (325)
Q Consensus 241 ~~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~----------e~~ 310 (325)
..++.++++++++|+++|.+.+||+|+++|++|++++||++++++|+++..+.++.........+.+ ++.
T Consensus 7 ~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 86 (176)
T 4hia_A 7 EKIRAVFDRSGVALTLVDMSLPEQPVVLANPPFLRMTGYTEGQILGFNCRFLQRGDENAQARADIRDALKLGRELQVVLR 86 (176)
T ss_dssp HHHHHHHHHCSSCCEEEETTSTTCCEEEECHHHHHHHTCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEE
T ss_pred HHHHHHHhcCCCcEEEEecCCCCCcEEEECHHHHHHHCcCHHHHcCCCcceeeCCCCCHHHHHHHHHHHHcCCceEEEEE
Confidence 3477889999999999998644589999999999999999999999999999988887776666554 666
Q ss_pred cccCCCceeeEEee
Q 020523 311 PYPKKKSIYMEYVR 324 (325)
Q Consensus 311 ~~~kdG~~~~~~~~ 324 (325)
.+++||+.+|+.++
T Consensus 87 ~~~~dG~~~~~~~~ 100 (176)
T 4hia_A 87 NYRANDEPFDNLLF 100 (176)
T ss_dssp EECTTCCEEEEEEE
T ss_pred EEcCCCCEEEEEEE
Confidence 77899999998765
No 57
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=99.37 E-value=1e-11 Score=100.14 Aligned_cols=110 Identities=15% Similarity=0.197 Sum_probs=84.7
Q ss_pred HHHHHHHHHhhCCCeEEEEcCCCCCCCEEEecHHHHHhc------------CCChhhhcCCCCCcccCCCCChHHHHHHH
Q 020523 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMS------------GFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83 (325)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~------------G~~~~e~~g~~~~~l~~~~~~~~~~~~~~ 83 (325)
...++..++++++.+++++|++ |+|+++|+++++++ ||++++++|+++..+++. +.....+.
T Consensus 20 e~~~l~~iLd~~~~~vii~D~~---g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~eliG~~~~~~~~~---~~~~~~~~ 93 (233)
T 3vol_A 20 HMARIKSALDNVSANVMIADND---LNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKN---PAHQRHLL 93 (233)
T ss_dssp HHHHHHHHHTTSSSEEEEEETT---SBEEEECHHHHHHHHHTHHHHHTTCTTCCTTSCTTCBGGGGSSS---HHHHHHHH
T ss_pred HHHHHHHHHhcCCCcEEEECCC---CcEEEecHHHHHHHHHHHHHHHhhcCCCCHHHHcCCCHHHHcCC---HHHHHHHH
Confidence 3457889999999999999999 99999999999998 899999999998776643 22222222
Q ss_pred HHHHhCCCeEEEEEEEecCCCEEEEEEEEEEeecCCCCceEEEEEEEeccCcchhh
Q 020523 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (325)
Q Consensus 84 ~~~~~~~~~~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~~ 139 (325)
..+. ..+..++ ..+| .|+.+++.|+.+ .+|.+.|++++++|||+++++
T Consensus 94 ~~~~--~~~~~~~---~~~g--~~~~~~~~Pi~d-~~G~~~g~v~~~~DITe~~~~ 141 (233)
T 3vol_A 94 ANLT--GVHKAEL---NLGG--RRFSLDVVPVFN-DANERLGSAVQWTDRTEEHRA 141 (233)
T ss_dssp HTCC--SCEEEEE---EETT--EEEEEEEEEEEC-TTCCEEEEEEEEEECHHHHHH
T ss_pred Hhcc--cceeEEE---EECC--EEEEEEEEEEEC-CCCCEEEEEEEEehhhHHHHH
Confidence 2211 1233332 2345 367899999998 899999999999999999985
No 58
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=99.37 E-value=1.6e-12 Score=106.63 Aligned_cols=85 Identities=31% Similarity=0.481 Sum_probs=72.8
Q ss_pred hhhhHhhhhccCCceEEecCCCCCCCeEEEehhhHHhhCCCcccccccccccccCCCCChHHHHHHHH----------hh
Q 020523 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSI----------AI 309 (325)
Q Consensus 240 ~~~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~----------e~ 309 (325)
...++.++++++++|+++|..+.||+|+++|++|++++||+++|++|+++.++.+|.........+.+ ++
T Consensus 62 ~~~~~~i~~~~~~~i~~~d~~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~e~ 141 (258)
T 3p7n_A 62 AQWVLDLIEASPIASVVSDPRLADNPLIAINQAFTDLTGYSEEECVGRNCRFLAGSGTEPWLTDKIRQGVREHKPVLVEI 141 (258)
T ss_dssp CHHHHHHHHTCSSEEEEECTTSTTCCEEEECHHHHHHHCCCGGGTTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHhcCCccEEEEcCCCCCCcEEEEhHHHHHHcCCCHHHHCCCChhhccCCCCchhHHHHHHHHHHcCCCeEEEE
Confidence 34578899999999999998433579999999999999999999999999999988888777666654 67
Q ss_pred ccccCCCceeeEEee
Q 020523 310 SPYPKKKSIYMEYVR 324 (325)
Q Consensus 310 ~~~~kdG~~~~~~~~ 324 (325)
+.+++||+.+|+.++
T Consensus 142 ~~~~~dG~~~~~~~~ 156 (258)
T 3p7n_A 142 LNYKKDGTPFRNAVL 156 (258)
T ss_dssp EEECTTSCEEEEEEE
T ss_pred EEEcCCCCEEEEeeE
Confidence 778899999998765
No 59
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=99.35 E-value=7.9e-13 Score=94.94 Aligned_cols=79 Identities=13% Similarity=0.050 Sum_probs=65.7
Q ss_pred hHhhhhccCCceEEecCCCCCCCeEEEehhhHHhhCCCcccccccccccccCCCCChHHHHHHHH-----------hhcc
Q 020523 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSI-----------AISP 311 (325)
Q Consensus 243 l~~~~~~~~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~-----------e~~~ 311 (325)
...++++++++|+++|. ||+|+|+|+++++++||+++|++|+++..+++|++.......+.+ +++.
T Consensus 5 ~~~~~~~~~~~i~~~d~---~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~~e~r~ 81 (121)
T 2kdk_A 5 SGEINVKPTEFITRFAV---NGKFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHNNLTDKHKAVLQSKEKILTDSYKF 81 (121)
T ss_dssp TTCCCCCSSEEEEEECT---TSBEEEECTHHHHHTCCCTTTSBTSBTTTTBCSSSHHHHHHHHHHHHTSSSCEEEEEEEE
T ss_pred ccccccCCccEEEEECC---CeeEEEEChhHHHHHCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhCCCCCccEEEEE
Confidence 34567888999999998 479999999999999999999999999999888877655544443 5667
Q ss_pred ccCCCceeeEEee
Q 020523 312 YPKKKSIYMEYVR 324 (325)
Q Consensus 312 ~~kdG~~~~~~~~ 324 (325)
++|||+.+|++++
T Consensus 82 ~~~dG~~~~~~~~ 94 (121)
T 2kdk_A 82 RAKDGSFVTLKSQ 94 (121)
T ss_dssp ECSSSCEEEEEEE
T ss_pred EEcCCCEEEEEEE
Confidence 7899999998764
No 60
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=99.35 E-value=2e-12 Score=93.45 Aligned_cols=78 Identities=19% Similarity=0.020 Sum_probs=59.7
Q ss_pred hhHhhhhccCCceEEecCCCCCCCeEEEehhhHHhhCCCcccc--cccccccccCCCCChHHHHHHHH---------hhc
Q 020523 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEV--VGQNCRFLNGVDTDTTVLYQVSI---------AIS 310 (325)
Q Consensus 242 ~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~--iG~~~~~l~~~~~~~~~~~~~~~---------e~~ 310 (325)
.++.++++++++|+++|. ||+|+++|+++++++||+++|+ +|+++..+.+ ........+.. +..
T Consensus 18 ~~~~l~e~~~~~i~~~d~---~g~i~~~N~a~~~~~G~~~~el~g~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~e~~ 92 (126)
T 3bwl_A 18 RLEALFENSPDMIDVLDA---DGTICEVNQRFCAELGYDESEVLGRSIWEFDLMF--DAEDVQTQLSGFSVDERRKFEGL 92 (126)
T ss_dssp HHHHHHHHCSSEEEEECT---TCBEEEECHHHHHHHTCCGGGTTTSBGGGTBTTC--CHHHHHHHHHTCCTTCEEEEEEE
T ss_pred HHHHHHhhCCcEEEEEcC---CCCEEEEcHHHHHHhCCCHHHHhhCCCchhhccC--CHHHHHHHHHHHhcCCCcceEEE
Confidence 366688999999999997 5799999999999999999999 5677777765 22223333222 445
Q ss_pred cccCCCceeeEEee
Q 020523 311 PYPKKKSIYMEYVR 324 (325)
Q Consensus 311 ~~~kdG~~~~~~~~ 324 (325)
..+|||+.+|++++
T Consensus 93 ~~~~dG~~~~~~~~ 106 (126)
T 3bwl_A 93 YERRDGSTMSVEVH 106 (126)
T ss_dssp EECTTSCEEEEEEE
T ss_pred EEeCCCCEEEEEEE
Confidence 56899999998764
No 61
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=99.35 E-value=4.8e-12 Score=90.62 Aligned_cols=108 Identities=14% Similarity=0.076 Sum_probs=84.8
Q ss_pred HHHHHHHHhhCCCeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCCCeEEEE
Q 020523 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNL 96 (325)
Q Consensus 17 ~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~ 96 (325)
....+.++++++++++++|.+ |+++++|+++++++|+++++++|+++..++++.........+..++..+.....++
T Consensus 11 ~~~~~~il~~~~~~i~~~D~~---g~i~~~N~a~~~l~g~~~~e~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (118)
T 3fg8_A 11 SSGRENLYFQGGLGFMALDED---LRIIYVNSGCLRHVRRSRDELLGRVVTEVLPETQGSYFDALCRKVLATGREQQTRV 87 (118)
T ss_dssp --CCCCSSSCTTCEEEEECTT---CBEEEECHHHHHHHTCCHHHHTTSBHHHHCGGGTTSHHHHHHHHHHHHCCCEEEEE
T ss_pred cchHHHHHhhCCceEEEECCC---CeEEEECHHHHHHhCCCHHHHcCCcHHHHcCccchHHHHHHHHHHHHcCCceEEEE
Confidence 345667899999999999999 99999999999999999999999998877766655566667778888887776633
Q ss_pred EEEecCCCEEEEEEEEEEeecCCCCceEEEEEEEeccCcc
Q 020523 97 LNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (325)
Q Consensus 97 ~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~ 136 (325)
.....+| .|+.++..|+.+ +++++++|||++
T Consensus 88 ~~~~~~g--~~~~~~~~p~~~-------g~v~~~~DITer 118 (118)
T 3fg8_A 88 DSLYSPG--MTIEVTAAADSG-------ALVVHFRDVTAE 118 (118)
T ss_dssp ECSSSTT--CEEEEEEEEETT-------EEEEEEEECSCC
T ss_pred EEEcCCC--eEEEEEEEEcCC-------cEEEEEEeccCC
Confidence 3333355 567788888753 377889999986
No 62
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=99.33 E-value=1.1e-12 Score=93.94 Aligned_cols=72 Identities=17% Similarity=0.180 Sum_probs=55.9
Q ss_pred cCCceEEecCCCCCCCeEEEehhhHHhhCCCcccccccccccccCCCCChHHHH---HHHH-----------hhccccCC
Q 020523 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLY---QVSI-----------AISPYPKK 315 (325)
Q Consensus 250 ~~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~---~~~~-----------e~~~~~kd 315 (325)
++++|+++|. +|+|+++|+++++||||+++|++|+++..+.++........ .+.. ++..++||
T Consensus 2 ~~d~i~~~d~---~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 78 (119)
T 2vv6_A 2 IPDAMIVIDG---HGIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVTGKRRD 78 (119)
T ss_dssp CCCEEEEEET---TSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTTCEEEEEECTT
T ss_pred CcceEEEECC---CCeEEEEhHHHHHHhCCCHHHHcCCCHHHhCCchHHHHHHHHHHHHhcCCCcccCCCceEEEEEeCC
Confidence 5789999997 47999999999999999999999999988876554322222 2211 34557899
Q ss_pred CceeeEEee
Q 020523 316 KSIYMEYVR 324 (325)
Q Consensus 316 G~~~~~~~~ 324 (325)
|+.+|++++
T Consensus 79 G~~~~~~~~ 87 (119)
T 2vv6_A 79 GTTFPMHLS 87 (119)
T ss_dssp SCEEEEEEE
T ss_pred CCEEEEEEE
Confidence 999999875
No 63
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.33 E-value=2.6e-12 Score=110.46 Aligned_cols=108 Identities=8% Similarity=0.097 Sum_probs=95.6
Q ss_pred CCeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCCCeEEEEEEEecCCCEEE
Q 020523 28 PDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFW 107 (325)
Q Consensus 28 ~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~~ 107 (325)
...++..+.+ |.++++|+++..++||++++++|+++..+++|++...+...+...+..+.....++++.+++|..+|
T Consensus 251 ~~f~~~~~~d---g~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~g~~~~~eyR~~~kdG~~vW 327 (361)
T 4f3l_A 251 EEFTSRHSLE---WKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKGKSCYYRFLTKGQQWIW 327 (361)
T ss_dssp CEEEEEECTT---SBEEEECTTSHHHHCCCHHHHTTSBGGGGBCHHHHHHHHHHHHHHHHHSEEECCCEEEECTTSEEEE
T ss_pred ceeEEEEcCC---ceEEEECChhhhhhCcCHHHHcCCCHHHeECHHHHHHHHHHHHHHHhCCCcceEEEEEEecCCCEEE
Confidence 3455667888 9999999999999999999999999999999988887777788888887766678899999999999
Q ss_pred EEEEEEEeecCC-CCceEEEEEEEeccCcchhh
Q 020523 108 MLFKMSLVFGKE-DGRATHFVAVQVPIVSRKHM 139 (325)
Q Consensus 108 ~~~~~~~~~~~~-~g~~~~~~~~~~DITe~k~~ 139 (325)
+..+..|+.+ . +|.+.+++++.+|||+++..
T Consensus 328 v~~~~~~v~~-~~~g~~~~iv~~~~dITe~~~~ 359 (361)
T 4f3l_A 328 LQTHYYITYH-QWNSRPEFIVCTHTVVSYAEVR 359 (361)
T ss_dssp EEEEEEEEEC-TTTCCEEEEEEEEEECCHHHHH
T ss_pred EEEEEEEEEc-CCCCCeeEEEEEEEECChhHhh
Confidence 9999999998 5 79999999999999999764
No 64
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=99.32 E-value=1.3e-12 Score=93.25 Aligned_cols=71 Identities=15% Similarity=0.146 Sum_probs=60.9
Q ss_pred CCceEEecCCCCCCCeEEEehhhHHhhCCCcccccccccccccCCCCChHHHHHHHH----------hhccccCCCceee
Q 020523 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSI----------AISPYPKKKSIYM 320 (325)
Q Consensus 251 ~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~----------e~~~~~kdG~~~~ 320 (325)
++.|++.|+ ||+|+|+|+++++++||+++|++|+++..+++|++.......+.+ +++.++|||+.+|
T Consensus 9 ~~~i~~~d~---~g~i~~~n~~~~~~~Gy~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~~w 85 (117)
T 3f1p_A 9 KTFLSEHSM---DMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYVW 85 (117)
T ss_dssp GEEEEEECT---TCBEEEECTHHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHSEEECCCEEEECTTSSEEE
T ss_pred ccEEEEECC---CceEEEECcChhhhhCCCHHHHcCCchhheECHHHHHHHHHHHHHHHhCCCeeeeEEEEEecCCCEEE
Confidence 567788887 589999999999999999999999999999999887766655544 7778899999999
Q ss_pred EEee
Q 020523 321 EYVR 324 (325)
Q Consensus 321 ~~~~ 324 (325)
++++
T Consensus 86 ~~~~ 89 (117)
T 3f1p_A 86 LETQ 89 (117)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9764
No 65
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=99.32 E-value=6.5e-12 Score=88.77 Aligned_cols=90 Identities=18% Similarity=0.173 Sum_probs=69.1
Q ss_pred HHHhhCCCeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCCCeEEEEEEEec
Q 020523 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKK 101 (325)
Q Consensus 22 ~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 101 (325)
.++++++++++++|.+ |.++|+|+++.+++||++++++|+++..+++|++.......+. ..+.....++++.++
T Consensus 3 ~lle~~~d~i~v~d~~---G~i~yvn~~~~~~lGy~~~el~G~~~~~~ihp~D~~~~~~~~~---~~~~~~~~e~r~~~k 76 (111)
T 2vlg_A 3 FPLQTKTDIHAVLASN---GRIIYISANSKLHLGYLQGEMIGSFLKTFLHEEDQFLVESYFY---NEHHLMPCTFRFIKK 76 (111)
T ss_dssp ------CCEEEEECTT---SBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHH---CSCCSSCEEEEEECT
T ss_pred chhhcCCCEEEEEcCC---CeEEEEChHHHHHhCCCHHHHcCCcHHHeECHhHHHHHHHHHh---ccCCCccEEEEEEcC
Confidence 4788999999999999 9999999999999999999999999888888887655443321 223334567888899
Q ss_pred CCCEEEEEEEEEEeec
Q 020523 102 DGTPFWMLFKMSLVFG 117 (325)
Q Consensus 102 dg~~~~~~~~~~~~~~ 117 (325)
||..+|+.+++.++.+
T Consensus 77 dG~~~wve~~~~~v~~ 92 (111)
T 2vlg_A 77 DHTIVWVEAAVEIVTT 92 (111)
T ss_dssp TSCEEEEEEEEEEC--
T ss_pred CCCEEEEEEEEEEEec
Confidence 9999999999999987
No 66
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=99.31 E-value=2.8e-11 Score=90.44 Aligned_cols=115 Identities=13% Similarity=0.127 Sum_probs=88.8
Q ss_pred HHHHHHHhhCCCeEEEEcCCCCCCCEEEecHH---HHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCCCeEE
Q 020523 18 LWVHEALDELPDSFTITDPSISGHPIVFASRG---FLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (325)
Q Consensus 18 ~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~---~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (325)
..+..++++++.++.++|.+ |.++++|++ +++++| ..++++|+++..+.++. .......+...+..+.....
T Consensus 19 ~~l~~IL~~~~~gI~~vD~~---g~I~~~N~a~~~~~~i~g-~~~~~iGr~v~~~~~~~-~~~~v~~i~~~l~~g~~~~~ 93 (151)
T 2qkp_A 19 EQANLILNHLPLEITFVNKD---DIFQYYNDSVPAAEMVFK-RTPSQVGRNVELCHPPK-VLDKVKKVFELLRNGQRDKV 93 (151)
T ss_dssp HHHHHHHHHSSSEEEEEETT---SBEEEECCCSCGGGCSSC-CCGGGTTSBGGGSSCHH-HHHHHHHHHHHHHTTSBSEE
T ss_pred HHHHHHHHhCCCceEEEcCC---CeEEEEeCCCchhhhhcC-CCHHHcCCCHHHhCCHH-HHHHHHHHHHHHHcCCccEE
Confidence 46889999999999999999 999999999 999999 56789999987765432 22223445566666766555
Q ss_pred EEEEEecCCCEEEEEEEEEEeecCCCCceEEEEEEEeccCcchhh
Q 020523 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (325)
Q Consensus 95 e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~~ 139 (325)
++.... .+...++.++..|+++ ++|.+.|.+.+++|||+.++.
T Consensus 94 ~~~~~~-~~~~~~v~v~~~Pi~d-~~G~~~G~vev~~Dit~l~~l 136 (151)
T 2qkp_A 94 NMWFQS-ERLGKFVYVTYAAVRD-QAGDFQGVLEYVQDIKPFFEL 136 (151)
T ss_dssp EEEEEE-TTTTEEEEEEEEEEEC-TTCCEEEEEEEEEECGGGGGG
T ss_pred EEEEec-CCCCeEEEEEEEEEEC-CCCCEEEEEEEEEECHHHHhh
Confidence 544432 3223457889999998 789999999999999998875
No 67
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=99.31 E-value=5e-11 Score=85.67 Aligned_cols=104 Identities=16% Similarity=0.213 Sum_probs=77.5
Q ss_pred HHHHHHHhhCCCeEEEEcCCCCCCCEEEecHHHHHhcC------------CChhhhcCCCCCcccCCCCChHHHHHHHHH
Q 020523 18 LWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSG------------FSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85 (325)
Q Consensus 18 ~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G------------~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~ 85 (325)
.+++.++++++++++++|.+ |+++++|+++++++| ++.++++|+++..+++. ..... ..
T Consensus 5 ~rl~~il~~~~~gviv~D~~---g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~~~~~~~~~---~~~~~---~~ 75 (121)
T 4hi4_A 5 ARIASALDNVSANVMIADND---LNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKN---PAHQR---HL 75 (121)
T ss_dssp HHHHHHHTTSSSEEEEEETT---CBEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTCBGGGGCSS---HHHHH---HH
T ss_pred HHHHHHHhcCCccEEEEcCC---CeEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCCCHHHhcCC---HHHHH---HH
Confidence 47889999999999999999 999999999999996 88899999998776542 11111 22
Q ss_pred HHhC-CCeEEEEEEEecCCCEEEEEEEEEEeecCCCCceEEEEEEEeccCcc
Q 020523 86 IREE-RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (325)
Q Consensus 86 ~~~~-~~~~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~ 136 (325)
+... ..+..++. .+|. ++.+++.|+.+ .+|.+.|++++++|||++
T Consensus 76 ~~~~~~~~~~~~~---~~~~--~~~~~~~pi~~-~~g~~~g~v~~~~DiTee 121 (121)
T 4hi4_A 76 LANLTGVHKAELN---LGGR--RFSLDVVPVFN-DANARLGSAVQWTDRTEE 121 (121)
T ss_dssp HHHCSSCEEEEEE---ETTE--EEEEEEEEEEC-TTSCEEEEEEEEEECC--
T ss_pred HhCcCCCcEEEEE---ECCE--EEEEEEEEEEC-CCCCEEEEEEEEEEecCC
Confidence 2222 22333322 2443 45788999998 789999999999999984
No 68
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=99.30 E-value=6.3e-12 Score=88.77 Aligned_cols=79 Identities=38% Similarity=0.725 Sum_probs=63.9
Q ss_pred hhhccCCceEEecCCCCCCCeEEEehhhHHhhCCCcccccccccccccCCCCChHHHHHHHH----------hhccccCC
Q 020523 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSI----------AISPYPKK 315 (325)
Q Consensus 246 ~~~~~~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~----------e~~~~~kd 315 (325)
++++++++++++|...++|+|+++|+++++++||++++++|+++..+.++.........+.+ ++...+++
T Consensus 2 ~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (115)
T 4eet_B 2 SPEFIEKNFVITDPRLPDNPIIFASDGFLELTEYSREEILGRNARFLQGPETDQATVQKIRDAIRDQRETTVQLINYTKS 81 (115)
T ss_dssp ---CCCCSEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTT
T ss_pred ccccCCCcEEEEcCCCCCCcEEEEcHHHHHHHCcCHHHHhCCCHHHhcCCCCChHHHHHHHHHHHcCCCcceEEEEecCC
Confidence 46788999999998322479999999999999999999999999988888877766655544 66667899
Q ss_pred CceeeEEee
Q 020523 316 KSIYMEYVR 324 (325)
Q Consensus 316 G~~~~~~~~ 324 (325)
|+.+|+.++
T Consensus 82 g~~~~~~~~ 90 (115)
T 4eet_B 82 GKKFWNLLH 90 (115)
T ss_dssp CCEEEEEEE
T ss_pred CCEEEEEEE
Confidence 999998765
No 69
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.29 E-value=9.1e-12 Score=107.94 Aligned_cols=107 Identities=8% Similarity=0.027 Sum_probs=88.7
Q ss_pred CeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCCC-eEEEEEEEecCCCEEE
Q 020523 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP-IEVNLLNYKKDGTPFW 107 (325)
Q Consensus 29 ~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~dg~~~~ 107 (325)
..++..+.+ |.++|+|+++..++||++++++|+++..+++|+|...+...+...+..+.. ...++++.+++|..+|
T Consensus 279 ~fi~~~~~d---g~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~~~~~~~~eyR~~~kdG~~vW 355 (387)
T 4f3l_B 279 EYVSRHAID---GKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCYKFKIKDGSFIT 355 (387)
T ss_dssp EEEEEECTT---SBEEEECTHHHHHHCCCHHHHTTSBGGGTBCHHHHHHHHHHHHHHTTCSSCEECCCEEEECTTSCEEE
T ss_pred eEEEEECCC---CEEEEECCCcccccCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhcCCCeeeEEEEEEccCCCEEE
Confidence 356677888 999999999999999999999999998999998877777777777655443 4568899999999999
Q ss_pred EEEEEEEeecCCCCceEEEEEEEeccCcchh
Q 020523 108 MLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (325)
Q Consensus 108 ~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~ 138 (325)
+..+..++.++.+|.+.+++++.+|||+||.
T Consensus 356 v~~~~~~~~~~~~g~~~~ivg~~~dIT~Rk~ 386 (387)
T 4f3l_B 356 LRSRWFSFMNPWTKEVEYIVSTNTVVLANVL 386 (387)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEECC----
T ss_pred EEEEEEEEECCCCCCEEEEEEEEEEcchhhc
Confidence 9999999988237899999999999999985
No 70
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=99.29 E-value=2.9e-12 Score=91.22 Aligned_cols=78 Identities=10% Similarity=0.132 Sum_probs=63.2
Q ss_pred hHhhhhccCCceEEecCCCCCCCeEEEehhhHHhhCCCcccccccccccccCCCCChHHHHHHHH------hhccccCCC
Q 020523 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSI------AISPYPKKK 316 (325)
Q Consensus 243 l~~~~~~~~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~------e~~~~~kdG 316 (325)
++.++++++++|+++|. +|+|+++|+++++++||++++++|+++.++.++..... +..+.. +....++||
T Consensus 15 ~~~~~~~~~~~i~~~d~---~g~i~~~N~~~~~l~G~~~~el~g~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~~~~~~g 90 (118)
T 3olo_A 15 AHYLINNAVEASFCLGD---NWQFLYVNDATCRMTEYSREQLLSMNLQDIDVDFALHD-WEEIRQKNNYTFKTRYRSQSG 90 (118)
T ss_dssp HHHHHHHCSSEEEEECT---TSBEEEECHHHHHHHCCCHHHHTTCBGGGTBTTGGGSC-HHHHHHHSEEEEEEEEECTTC
T ss_pred HHHHHhcCCceEEEECC---CCcEEEEHHHHHHHHCCCHHHHhCCChhhcccccCHHH-HHHHHhcCcEEEEEEEEccCC
Confidence 55688999999999997 57999999999999999999999999988875433222 444443 677788999
Q ss_pred ceeeEEee
Q 020523 317 SIYMEYVR 324 (325)
Q Consensus 317 ~~~~~~~~ 324 (325)
+.+|+.++
T Consensus 91 ~~~~~~~~ 98 (118)
T 3olo_A 91 RIFLVEMS 98 (118)
T ss_dssp CEEEEEEE
T ss_pred CEEEEEEE
Confidence 99998765
No 71
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=99.29 E-value=2.1e-12 Score=92.68 Aligned_cols=79 Identities=11% Similarity=0.104 Sum_probs=61.9
Q ss_pred hhHhhhhccCCceEEecCCCCCCCeEEEehhhHHhhCCCcccccccccccccCCCCC-hHHHHHHHH----------hhc
Q 020523 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD-TTVLYQVSI----------AIS 310 (325)
Q Consensus 242 ~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~-~~~~~~~~~----------e~~ 310 (325)
.|+.++++++++|++ +. +|+|+++|++|++|+||++++++|+++..+++++.. ......+.+ |+.
T Consensus 4 ~~~~~~~~~~~~i~~-~~---~g~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 79 (120)
T 3mqq_A 4 DYKTAFHLAPIGLVL-SR---DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRI 79 (120)
T ss_dssp CHHHHHHHCSSEEEE-EE---TTEEEEECHHHHHHTTSCHHHHTTCBGGGGSSSHHHHHHHHHHHHHHHHHHSCEEEEEE
T ss_pred hHHHHHhcCCceEEE-ec---CCEEHHHHHHHHHHhCcCHHHhCCCchhhccCChhhHHHHHHHHHHHHhcCCcceEEEE
Confidence 377899999999964 54 589999999999999999999999999888755432 222222222 677
Q ss_pred cccCCCceeeEEee
Q 020523 311 PYPKKKSIYMEYVR 324 (325)
Q Consensus 311 ~~~kdG~~~~~~~~ 324 (325)
.+++||+.+|+.++
T Consensus 80 ~~~~dG~~~~~~~~ 93 (120)
T 3mqq_A 80 MKRAGGELFWCHVT 93 (120)
T ss_dssp EECTTSCEEEEEEE
T ss_pred EEeCCCCEEEEEEE
Confidence 78999999999875
No 72
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=99.29 E-value=7.5e-12 Score=94.94 Aligned_cols=88 Identities=35% Similarity=0.618 Sum_probs=73.0
Q ss_pred ccchhhhHhhhhccCCceEEecCCCCCCCeEEEehhhHHhhCCCcccccccccccccCCCCChHHHHHHHH---------
Q 020523 237 GFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSI--------- 307 (325)
Q Consensus 237 ~~~~~~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~--------- 307 (325)
......+..++++++++|+++|...+||+|+++|++|++++||++++++|+++..+.++.........+..
T Consensus 31 ~~~~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 110 (166)
T 3ue6_A 31 EDPDYSLVKALQMAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDPRAVDKIRNAITKGVDTS 110 (166)
T ss_dssp CCCCCHHHHHHHHTTSCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHhcCCceEEEEEccCCCCcEEEECHHHHHHhCcCHHHHcCCCHhheeCCCCCHHHHHHHHHHHhcCCceE
Confidence 33456688999999999999998423589999999999999999999999999988888877766665544
Q ss_pred -hhccccCCCceeeEEee
Q 020523 308 -AISPYPKKKSIYMEYVR 324 (325)
Q Consensus 308 -e~~~~~kdG~~~~~~~~ 324 (325)
++...++||+.+|+.++
T Consensus 111 ~e~~~~~~~g~~~~~~~~ 128 (166)
T 3ue6_A 111 VCLLNYRQDGTTFWNLFF 128 (166)
T ss_dssp EEEEEECTTSCEEEEEEE
T ss_pred EEEEEEcCCCCEEEEEEE
Confidence 66667899999998765
No 73
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=99.26 E-value=1.2e-11 Score=89.50 Aligned_cols=79 Identities=38% Similarity=0.700 Sum_probs=66.2
Q ss_pred hhhccCCceEEecCCCCCCCeEEEehhhHHhhCCCcccccccccccccCCCCChHHHHHHHH----------hhccccCC
Q 020523 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSI----------AISPYPKK 315 (325)
Q Consensus 246 ~~~~~~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~----------e~~~~~kd 315 (325)
++++++++|+++|...+||+|+++|++|++++||++++++|+++..+.++.........+.. ++...+++
T Consensus 2 ~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 81 (128)
T 3t50_A 2 ASEFTLMPMLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPIDIDIINYKKS 81 (128)
T ss_dssp CCCCCSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTT
T ss_pred ccccCcccEEEecCCCCCCcEEEEcHHHHHHhCcCHHHHcCCCHhhhcCCccCHHHHHHHHHHHHcCCCceeEEEEEcCC
Confidence 46788999999998422579999999999999999999999999999888877766665544 66667899
Q ss_pred CceeeEEee
Q 020523 316 KSIYMEYVR 324 (325)
Q Consensus 316 G~~~~~~~~ 324 (325)
|..+|+.++
T Consensus 82 g~~~~~~~~ 90 (128)
T 3t50_A 82 GEAFWNRLH 90 (128)
T ss_dssp CCEEEEEEE
T ss_pred CCEEEEEEE
Confidence 999998765
No 74
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=99.24 E-value=7.2e-12 Score=88.99 Aligned_cols=72 Identities=14% Similarity=0.180 Sum_probs=55.9
Q ss_pred cCCceEEecCCCCCCCeEEEehhhHHhhCCCcccccccccccccCCCCChHHHHHHHH---------------hhccccC
Q 020523 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSI---------------AISPYPK 314 (325)
Q Consensus 250 ~~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~---------------e~~~~~k 314 (325)
.+++|+++|.+ +|+|+++|+++++||||+++|++|+++.+++++..... ...+.+ ++..++|
T Consensus 7 ~~~~i~~~d~~--~g~I~~~N~aa~~l~G~~~~el~g~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (114)
T 1ll8_A 7 FNKAIFTVDAK--TTEILVANDKACGLLGYSSQDLIGQKLTQFFLRSDSDV-VEALSEEHMEADGHAAVVFGTVVDIISR 83 (114)
T ss_dssp TTCEEEEEETT--TCBEEEECTTHHHHHTCCTTTTTTSBGGGGSSCTTTHH-HHHTTSSTTSSSSCSSCCCSSSEEECCT
T ss_pred CCceEEEEECC--CCeEEEehHHHHHHhCCCHHHHcCCCHHHhcCcchhHH-HHHHHHHhhccCCcceeccCcEEEEEec
Confidence 45799999973 27999999999999999999999999999987764432 222211 2445679
Q ss_pred CCceeeEEee
Q 020523 315 KKSIYMEYVR 324 (325)
Q Consensus 315 dG~~~~~~~~ 324 (325)
||+.+|++++
T Consensus 84 dG~~~~v~~~ 93 (114)
T 1ll8_A 84 SGEKIPVSVW 93 (114)
T ss_dssp TCCCEEEECC
T ss_pred CCCEEEEEEE
Confidence 9999999875
No 75
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.22 E-value=1.6e-10 Score=81.95 Aligned_cols=107 Identities=12% Similarity=0.119 Sum_probs=81.1
Q ss_pred HHHHHHhhCCCeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCCCe-EEEEE
Q 020523 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI-EVNLL 97 (325)
Q Consensus 19 ~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~e~~ 97 (325)
....++++++++++++|.+ |.++++|+++++++|++.++++|+++..++++... ....+.+.+..+... ..+..
T Consensus 8 l~~~il~~~~~~i~~~D~~---g~I~~~N~aa~~l~g~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 82 (115)
T 3b33_A 8 LPSAILNNMVTATLILDDG---LAIRYANPAAELLFSQSAKRIVEQSLSQLIQHASL--DLALLTQPLQSGQSITDSDVT 82 (115)
T ss_dssp HHHHHHHHCSSEEEEECTT---CBEEEECHHHHHHTTSCHHHHTTCBHHHHCSEEEC--CTHHHHHHHHHCCCEEEEEEE
T ss_pred cHHHHHhhcCceEEEECCC---CcEEEECHHHHHHhCCCHHHHhCCCHHHHhCccch--hhHHHHHHHHcCCcccCCceE
Confidence 3456899999999999999 99999999999999999999999987766543221 122344455555543 34555
Q ss_pred EEecCCCEEEEEEEEEEeecCCCCceEEEEEEEeccC
Q 020523 98 NYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (325)
Q Consensus 98 ~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 134 (325)
.. ++|..+|+.+++.|+.+ +|. .+++.+++||+
T Consensus 83 ~~-~~g~~~~~~~~~~pi~~--~g~-~~~l~~~~Di~ 115 (115)
T 3b33_A 83 FV-VDGRPLMLEVTVSPITW--QRQ-LMLLVEMRKID 115 (115)
T ss_dssp EE-ETTEEEEEEEEEEEEEE--TTE-EEEEEEEEEC-
T ss_pred Ee-cCCCEEEEEEEEEEeec--CCc-eEEEEEEEeCC
Confidence 55 78988999999999975 454 57888899985
No 76
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=99.19 E-value=3.5e-11 Score=84.74 Aligned_cols=80 Identities=8% Similarity=-0.026 Sum_probs=62.7
Q ss_pred hhhHhhhhccCCceEEecCCCCCCCeEEEehhhHHhhCCCcccccccccccccCCCCChHHHHHHHH----------hhc
Q 020523 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSI----------AIS 310 (325)
Q Consensus 241 ~~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~----------e~~ 310 (325)
+.++.++++++++++++|. +|+|+++|+++++++||++++++|+++.+++ |+........+.+ +..
T Consensus 3 ~~~~~~~~~~~~~i~~~d~---~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (114)
T 3luq_A 3 ERLRLFTEHAPAALAMFDR---EMRYLAVSRRWREDYGLGDGDILGMSHYDIF-PEIGEEWKSVHRRGLAGEVIRVEEDC 78 (114)
T ss_dssp HHHHHHHHTCSSEEEEEET---TCBEEEECHHHHHHTTCCSSCCTTCBHHHHC-TTCCHHHHHHHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHhcCCceEEEEcC---CcEEEEECHHHHHHHCCCHHHHcCCcHHHHC-CccHHHHHHHHHHHhcCCcceeeeeE
Confidence 4578899999999999997 5799999999999999999999999999888 5555444333333 235
Q ss_pred cccCCCceeeEEee
Q 020523 311 PYPKKKSIYMEYVR 324 (325)
Q Consensus 311 ~~~kdG~~~~~~~~ 324 (325)
..+++|+.+|+.++
T Consensus 79 ~~~~~g~~~~~~~~ 92 (114)
T 3luq_A 79 FVRADGRTQWLRWE 92 (114)
T ss_dssp EEC--CCEEEEEEE
T ss_pred EEcCCCcEEEEEEE
Confidence 67789999998764
No 77
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.18 E-value=3.4e-11 Score=102.50 Aligned_cols=81 Identities=38% Similarity=0.746 Sum_probs=68.3
Q ss_pred HhhhhccCCceEEecCCCCCCCeEEEehhhHHhhCCCcccccccccccccCCCCChHHHHHHHH----------hhcccc
Q 020523 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSI----------AISPYP 313 (325)
Q Consensus 244 ~~~~~~~~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~----------e~~~~~ 313 (325)
..++++++++|+++|.+.+||+|+++|++|++++||+++|++|+++.++.+|+........+.+ +++.++
T Consensus 14 ~~~~~~~~~~i~~~D~~~~~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 93 (332)
T 2wkq_A 14 ATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNARFLQGPETDRATVRKIRDAIDNQTEVTVQLINYT 93 (332)
T ss_dssp CCCGGGCCSEEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEEC
T ss_pred HhHhhcCCCcEEEecCCCCCCCEEEeehHHHHHhCCCHHHHcCCCchhhcCCCCCHHHHHHHHHHHHcCCeeEEEEEEEc
Confidence 3468889999999998433589999999999999999999999999999888877766555554 667788
Q ss_pred CCCceeeEEee
Q 020523 314 KKKSIYMEYVR 324 (325)
Q Consensus 314 kdG~~~~~~~~ 324 (325)
+||+.+|++++
T Consensus 94 ~dG~~~~~~~~ 104 (332)
T 2wkq_A 94 KSGKKFWNLFH 104 (332)
T ss_dssp TTCCEEEEEEE
T ss_pred CCCCEEEEeeE
Confidence 99999998765
No 78
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=99.16 E-value=4.4e-11 Score=89.06 Aligned_cols=78 Identities=32% Similarity=0.657 Sum_probs=61.0
Q ss_pred hhhccCCceEEecCCCCCCCeEEEehhhHHhhCCCcccccccccccccCCCC-----------ChHHHHHHHH-------
Q 020523 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDT-----------DTTVLYQVSI------- 307 (325)
Q Consensus 246 ~~~~~~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~-----------~~~~~~~~~~------- 307 (325)
++++ +++|+++|...++|+|+++|+++++++||+++|++|+++..+.+++. .......+.+
T Consensus 31 ~~~~-~~~i~~~d~~d~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (149)
T 3d72_A 31 PVDT-SVALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPKSTRKYVDSNTINTMRKAIDRNAE 109 (149)
T ss_dssp SCCT-TSCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGGSTTSCCCTTCCCSSSCHHHHHHHHHHHHHTCC
T ss_pred hhcC-CccEEEEeccCCCCcEEEECHHHHHHHCcCHHHHcCCChhHhCCccccccccccccccChHHHHHHHHHHHCCCc
Confidence 4555 48999998422268999999999999999999999999998887763 5544444443
Q ss_pred ---hhccccCCCceeeEEee
Q 020523 308 ---AISPYPKKKSIYMEYVR 324 (325)
Q Consensus 308 ---e~~~~~kdG~~~~~~~~ 324 (325)
++..+++||+.+|+.++
T Consensus 110 ~~~e~~~~~~dG~~~~~~~~ 129 (149)
T 3d72_A 110 VQVEVVNFKKNGQRFVNFLT 129 (149)
T ss_dssp EEEEEEEECTTCCEEEEEEE
T ss_pred eEEEEEEECCCCCEEEEEEE
Confidence 56667899999998765
No 79
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=99.09 E-value=7.6e-10 Score=95.25 Aligned_cols=115 Identities=18% Similarity=0.282 Sum_probs=91.5
Q ss_pred HHHHHHHHHhhCCCeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCCCeEEE
Q 020523 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVN 95 (325)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 95 (325)
....+..+++++++||+++|.+ |+++++|++ ++++ ++.++++|+++..++++. .......+..++..+.....+
T Consensus 237 ~~~~l~~IL~~l~dgIivvD~~---g~I~~~N~a-e~i~-~~~~e~iGr~v~~~~p~~-~~~~~~~l~~~l~~g~~~~~~ 310 (369)
T 3cax_A 237 NIEELKAIFEALPVDVTFIDKD---DRVRFFSPG-ERIF-TRTPSVLGRPVQLCHPPK-SVYVVNKILKAFKEGRKKEAT 310 (369)
T ss_dssp CHHHHHHHHHHSSSEEEEECTT---SBEEEECCS-SCSS-CCCGGGTTCBTTTSSCGG-GHHHHHHHHHHHHHTSCSCEE
T ss_pred hHHHHHHHHHhCCCcEEEECCC---CcEEEEcCH-HHcc-CChHHHcCCcHHHHCChh-hHHHHHHHHHHHHcCCceEEE
Confidence 4457889999999999999999 999999999 9999 889999999988776543 223334455666777665444
Q ss_pred EEEEecCCCEEEEEEEEEEeecCCCCceEEEEEEEeccCcchhhh
Q 020523 96 LLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140 (325)
Q Consensus 96 ~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~~~ 140 (325)
... ..+| .++.++..|+++ .+|.+.|++.+++|||+.++++
T Consensus 311 ~~~-~~~g--~~v~v~~~PI~d-~~G~~~G~v~v~~DITe~~~le 351 (369)
T 3cax_A 311 FWL-RLRE--KYVYIKYVPLFN-EKGEYIGTLEMTMDIAPYKKIE 351 (369)
T ss_dssp EEE-EETT--EEEEEEEEEEEC-TTSCEEEEEEEEEECHHHHTCC
T ss_pred EEE-eeCC--EEEEEEEEEEEC-CCCCEEEEEEEEEcCHHHHHHH
Confidence 443 3355 578889999998 8999999999999999998863
No 80
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=99.07 E-value=9e-11 Score=84.29 Aligned_cols=78 Identities=17% Similarity=0.159 Sum_probs=63.9
Q ss_pred HhhhhccCCceEEecCCCCCCCeEEEehhhHHhhCCCcccccccccccccCCCCChHHHHHHHH---------hhccccC
Q 020523 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSI---------AISPYPK 314 (325)
Q Consensus 244 ~~~~~~~~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~---------e~~~~~k 314 (325)
+.++++++++|+++|. +|+|+++|+++++++||++++++|+++.+++++.........+.. ++...++
T Consensus 2 ~~l~~~~~~~i~~~d~---~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (126)
T 3mjq_A 2 KNFLETIEDMILIINR---EGRLLYANTAVPKKLGYTHEELMSMHILTITSAGKMAEGEKILAELFAGKKESLPLSLEKK 78 (126)
T ss_dssp CTTGGGCSSEEEEEET---TSBEEEECTHHHHHHSCCHHHHHHSBHHHHHCTTCHHHHHHHHHHHHHTCCSEEEEEEECT
T ss_pred hhHHhhCCceEEEEeC---CCcEEEEcHHHHHHHCCCHHHHcCCCHHHHcCchhHHHHHHHHHHHHhCCCceeEEEEEcc
Confidence 4578899999999998 479999999999999999999999999998877765544444433 5556778
Q ss_pred CCceeeEEee
Q 020523 315 KKSIYMEYVR 324 (325)
Q Consensus 315 dG~~~~~~~~ 324 (325)
+|..+|+.++
T Consensus 79 ~g~~~~~~~~ 88 (126)
T 3mjq_A 79 EGTSIPAKAR 88 (126)
T ss_dssp TSCEEEEEEE
T ss_pred CCCEEEEEEE
Confidence 9999998764
No 81
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=99.06 E-value=3.2e-10 Score=81.13 Aligned_cols=85 Identities=36% Similarity=0.687 Sum_probs=67.1
Q ss_pred hhhhHhhhhccCCceEEecCCCCCCCeEEEehhhHHhhCCCcccccccccccccCCCCChHHHHHHHH----------hh
Q 020523 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSI----------AI 309 (325)
Q Consensus 240 ~~~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~----------e~ 309 (325)
...++.++++++++++++|....+|.|+++|+++++++||+.++++|+++..+.++.........+.. ++
T Consensus 5 ~~~~~~~~~~~~~~i~~~d~~d~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (130)
T 2z6d_A 5 SQELKTALSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDTDKNEVAKIRDCVKNGKSYCGRL 84 (130)
T ss_dssp --CHHHHHHHTTCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHhcccceeeeeccCCCCcEEEecHHHHHHhCcCHHHHcCCChhhccCCCCCchHHHHHHHHHHcCCcceeEE
Confidence 45578899999999999992111579999999999999999999999999988888777665554443 55
Q ss_pred ccccCCCceeeEEee
Q 020523 310 SPYPKKKSIYMEYVR 324 (325)
Q Consensus 310 ~~~~kdG~~~~~~~~ 324 (325)
...+++|+.+|+.++
T Consensus 85 ~~~~~~g~~~~~~~~ 99 (130)
T 2z6d_A 85 LNYKKDGTPFWNLLT 99 (130)
T ss_dssp EEECTTSCEEEEEEE
T ss_pred EEEcCCCcEEEEEEE
Confidence 566789999888754
No 82
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=99.06 E-value=1.6e-10 Score=82.73 Aligned_cols=83 Identities=10% Similarity=-0.083 Sum_probs=59.1
Q ss_pred chhhhHhhhhccCCceEEecCCCCCCCeEEEehhhHHhhCCCcccccc--cccccccCCCCChHHHHHHHH---------
Q 020523 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVG--QNCRFLNGVDTDTTVLYQVSI--------- 307 (325)
Q Consensus 239 ~~~~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG--~~~~~l~~~~~~~~~~~~~~~--------- 307 (325)
.+..|+.++++++++++++|.+ +.++++|+++++++||++++++| ..+..+++|++.......+.+
T Consensus 5 ~~~~l~~~~~~~~~~i~~~d~~---~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 81 (125)
T 3nja_A 5 AEKLLHTAESDAGIGSWVLHME---SGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVLGDRPFD 81 (125)
T ss_dssp ------------CCEEEEEETT---TTEEEECHHHHHHHTCCTTTCCCBHHHHHHHBCTTTHHHHHHHHHHHHHSCCCEE
T ss_pred HHHHHHHHHHhCCeeEEEEEcC---CCcEEECHHHHHHhCCCcccccccHHHHHhhcChhHHHHHHHHHHHHHhcCCCce
Confidence 3456788999999999999985 69999999999999999999999 556677778877666555544
Q ss_pred -hhccccCCCceeeEEee
Q 020523 308 -AISPYPKKKSIYMEYVR 324 (325)
Q Consensus 308 -e~~~~~kdG~~~~~~~~ 324 (325)
+++..+++|+.+|+.++
T Consensus 82 ~e~~~~~~~g~~~~~~~~ 99 (125)
T 3nja_A 82 VEYRIVRPDGQVRELLER 99 (125)
T ss_dssp EEEEEECTTSCEEEEEEE
T ss_pred EEEEEECCCCCEEEEEEe
Confidence 67777899999998764
No 83
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=99.05 E-value=9.7e-11 Score=83.12 Aligned_cols=82 Identities=7% Similarity=-0.123 Sum_probs=68.1
Q ss_pred hhhhHhhhhccCCceEEecCCCCCCCeEEEehhhHHhhCCCccccccccc--ccccCCCCChHHHHHHHH----------
Q 020523 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNC--RFLNGVDTDTTVLYQVSI---------- 307 (325)
Q Consensus 240 ~~~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~--~~l~~~~~~~~~~~~~~~---------- 307 (325)
+++|+.++++++++++.+|.+ +.++++|+++++++||++++++|+.. ..+++|++.......+.+
T Consensus 3 ~~~~~~l~~~~~~~i~~~d~~---~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~ 79 (118)
T 3icy_A 3 AEELQALVDNIPAAIYHLDVS---GQATIRFRPPAFLKTLVSEHAGTTRLNTLSMIHHDDRHMLSNAYSKLREAKHSLTL 79 (118)
T ss_dssp HHHHHHHHTTCCCCCEEECTT---SCEEECCCCCGGGGGGEEEETTEEEEGGGGGBCGGGHHHHHHHHHHHHHSCCEEEE
T ss_pred HHHHHHHHhcCCceEEEEEcC---CCceEEechhHhhcCCCHHHccCChhHHHHHcCHHHHHHHHHHHHHHHhcCCCceE
Confidence 356888999999999999984 79999999999999999999988754 567788877766655554
Q ss_pred hhccccCCCceeeEEee
Q 020523 308 AISPYPKKKSIYMEYVR 324 (325)
Q Consensus 308 e~~~~~kdG~~~~~~~~ 324 (325)
+++..++||+.+|+..+
T Consensus 80 e~r~~~~~g~~~w~~~~ 96 (118)
T 3icy_A 80 VYRIVTPEGKLHWIEDH 96 (118)
T ss_dssp EEEEECTTCCEEEEEEE
T ss_pred EEEEECCCCCEEEEEEE
Confidence 77778899999998754
No 84
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=99.04 E-value=4.3e-10 Score=79.76 Aligned_cols=81 Identities=15% Similarity=0.104 Sum_probs=65.0
Q ss_pred hhhHhhhhccCCceEEecCCCCCCCeEEEehhhHHhhCCCcccccccccccccCCCCChHHHHHHHH----------hhc
Q 020523 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSI----------AIS 310 (325)
Q Consensus 241 ~~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~----------e~~ 310 (325)
..++.++++++++++++|. +|+|+++|+++++++|+++++++|+++..+.++.........+.+ ++.
T Consensus 7 ~~~~~~~~~~~~~i~~~d~---~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (124)
T 3lyx_A 7 KQRAKAFDYVFDAIVVTDL---QGFIIDWNKGSETLYGYSKEQAIGQPVNMLHVPGDTEHITSEVISAVENQGKWTGEIR 83 (124)
T ss_dssp HHHHHGGGTCSSEEEEEET---TCBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTTHHHHHHHHHHHHHHTSCEEEEEE
T ss_pred HHHHHHHhhcCceEEEECC---CCcEeehhhHHHHHhCCCHHHHcCCCHHHhcCcchhhHHHHHHHHHHHcCCcccceEE
Confidence 4577899999999999997 479999999999999999999999999866666555444433333 556
Q ss_pred cccCCCceeeEEee
Q 020523 311 PYPKKKSIYMEYVR 324 (325)
Q Consensus 311 ~~~kdG~~~~~~~~ 324 (325)
..+++|..+|+.++
T Consensus 84 ~~~~~g~~~~~~~~ 97 (124)
T 3lyx_A 84 MLHKDGHIGWIESM 97 (124)
T ss_dssp EECTTSCEEEEEEE
T ss_pred EEccCCCEEEEEEE
Confidence 67789999998764
No 85
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=99.04 E-value=4.2e-10 Score=83.20 Aligned_cols=85 Identities=15% Similarity=0.171 Sum_probs=66.7
Q ss_pred ccchhhhHhhhhccCCceEEecCCCCCCCeEEEehhhHHhhCCCccccccc--ccccccCCCCChHHHHHHHH-------
Q 020523 237 GFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQ--NCRFLNGVDTDTTVLYQVSI------- 307 (325)
Q Consensus 237 ~~~~~~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~--~~~~l~~~~~~~~~~~~~~~------- 307 (325)
...+++|+.++++++.|++.+|+. +.++++|+++++++||+++++.+. .+..+++|++...+...+..
T Consensus 5 ~~se~rl~~~~~~~~~g~w~~d~~---~~~~~~s~~~~~~~G~~~~~~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~~~~ 81 (142)
T 3mr0_A 5 SASEERFQLAVSGASAGLWDWNPK---TGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDT 81 (142)
T ss_dssp ----CCHHHHHHHTTCEEEEECTT---TCCEEECHHHHHHTTCCGGGSCSEEC---CCBCTTTHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhCCcEEEEEEcC---CCeEEECHHHHHHhCCCccccCCCHHHHHhhcCHHHHHHHHHHHHHHHhCCCc
Confidence 344567889999999999999985 588999999999999999998874 45677889888776666654
Q ss_pred ---hhccccCCCceeeEEee
Q 020523 308 ---AISPYPKKKSIYMEYVR 324 (325)
Q Consensus 308 ---e~~~~~kdG~~~~~~~~ 324 (325)
|++.+++||+.+|+...
T Consensus 82 ~~~e~r~~~~~G~~~w~~~~ 101 (142)
T 3mr0_A 82 YDVEYRVRTRSGDFRWIQSR 101 (142)
T ss_dssp EEEEEEEECTTSCEEEEEEE
T ss_pred eEEEEEEECCCCCEEEEEEE
Confidence 77888999999998753
No 86
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=99.04 E-value=2.5e-10 Score=80.93 Aligned_cols=77 Identities=14% Similarity=0.027 Sum_probs=58.2
Q ss_pred hhhhccCCceEEecCCCCCCCeEEEehhhHHhhCCCcccccccccccc-cCCCCChHHHHHHHH---------hhccc-c
Q 020523 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFL-NGVDTDTTVLYQVSI---------AISPY-P 313 (325)
Q Consensus 245 ~~~~~~~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l-~~~~~~~~~~~~~~~---------e~~~~-~ 313 (325)
.++++++.|++++|. ||+|+++|+++++++||++++++|+++.+. .+....+.+..++.+ ++.+. +
T Consensus 21 ~~ld~l~~Gii~lD~---~g~I~~~N~~~e~~sG~~~~eviGk~~f~~~~~~~~~~~f~~rf~~~~~~g~l~~~~~~v~~ 97 (125)
T 1nwz_A 21 GQLDGLAFGAIQLDG---DGNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCTDSPEFYGKFKEGVASGNLNTMFEYTFD 97 (125)
T ss_dssp HHHTTCSSEEEEEET---TCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHHTCCEEEEEEEEC
T ss_pred HHHhccCceEEEECC---CCEEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCceeEEEEEEEc
Confidence 468999999999998 579999999999999999999999999774 444555565555544 33333 6
Q ss_pred CCCceeeEEee
Q 020523 314 KKKSIYMEYVR 324 (325)
Q Consensus 314 kdG~~~~~~~~ 324 (325)
++|+++++.++
T Consensus 98 ~~~~p~~v~i~ 108 (125)
T 1nwz_A 98 YQMTPTKVKVH 108 (125)
T ss_dssp TTSCCEEEEEE
T ss_pred CCCCEEEEEEE
Confidence 66666665543
No 87
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=99.02 E-value=1.8e-09 Score=91.19 Aligned_cols=108 Identities=9% Similarity=0.037 Sum_probs=92.2
Q ss_pred CCeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCCC-----eEEEEEEEecC
Q 020523 28 PDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP-----IEVNLLNYKKD 102 (325)
Q Consensus 28 ~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~e~~~~~~d 102 (325)
...+...+.+ |.++|+|+++..++||.+++++|+++..+++|+|.......+...+..|.. ...++++++++
T Consensus 154 ~~fi~r~~~d---G~~~yvn~~~~~lLGY~peELiG~s~~~~vHPdD~~~~~~~~~~~l~~G~~~~~~~~s~~yR~~~kd 230 (339)
T 3rty_A 154 PKFAIRHTAT---GIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRFLIQN 230 (339)
T ss_dssp CEEEEEEETT---CBEEEECTTHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHTTSTTCCCBCCCEEEECTT
T ss_pred ceEEEEECCC---CeEEEcChhhhcccCCCHHHHcCCcHHHEECHHHHHHHHHHHHHHHHcCCcccccccceEEEEEccC
Confidence 4567788899 999999999999999999999999999999999888777778888876654 34678999999
Q ss_pred CCEEEEEEEEEEeecCCCCceEEEEEEEeccCcchh
Q 020523 103 GTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (325)
Q Consensus 103 g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~ 138 (325)
|..+|+..+..++.++..+.+..+++..+.++....
T Consensus 231 G~~vWlet~~~~~~np~s~~~~~II~~h~vi~~p~~ 266 (339)
T 3rty_A 231 GCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQGPKQ 266 (339)
T ss_dssp SCEEEEEEEEEEEECTTTCSEEEEEEEEEEEECCSS
T ss_pred CCEEEEEEEEEEEECCCCCCeeEEEEEEEECCCCCC
Confidence 999999999999987345677788888888888754
No 88
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=99.01 E-value=3.5e-10 Score=80.27 Aligned_cols=76 Identities=9% Similarity=-0.032 Sum_probs=58.0
Q ss_pred hhhccCCceEEecCCCCCCCeEEEehhhHHhhCCCcccccccccccc-cCCCCChHHHHHHHH---------hhccc-cC
Q 020523 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFL-NGVDTDTTVLYQVSI---------AISPY-PK 314 (325)
Q Consensus 246 ~~~~~~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l-~~~~~~~~~~~~~~~---------e~~~~-~k 314 (325)
++++++.|++++|. ||+|+++|+++++++||++++++|+++.+. .+....+.+..++.+ ++.+. ++
T Consensus 27 ~ld~l~~GiivlD~---dg~I~~~N~~~e~isG~s~eeviGk~~f~~~~p~~~~~~f~grf~~~~~~G~l~~~~~yv~~~ 103 (129)
T 1mzu_A 27 EFDALPVGAIQVDG---SGVIHRYNRTESRLSGRIPERVIGRNFFTEVAPCTNIPAFSGRFMDGVTSGTLDARFDFVFDF 103 (129)
T ss_dssp TGGGCSSEEEEEET---TCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHTSCCEEEEEEEEEC
T ss_pred HHhccCceEEEECC---CCeEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCceeEEEEEEEcC
Confidence 68899999999998 579999999999999999999999999774 444555565555554 33333 66
Q ss_pred CCceeeEEee
Q 020523 315 KKSIYMEYVR 324 (325)
Q Consensus 315 dG~~~~~~~~ 324 (325)
+|+++++.++
T Consensus 104 ~~~p~~v~i~ 113 (129)
T 1mzu_A 104 QMAPVRVQIR 113 (129)
T ss_dssp SSCEEEEEEE
T ss_pred CCCEEEEEEE
Confidence 7776666543
No 89
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=99.01 E-value=2.6e-10 Score=97.70 Aligned_cols=118 Identities=8% Similarity=0.075 Sum_probs=85.9
Q ss_pred hHHHHHHHHHhhCCCeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCCCeEE
Q 020523 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (325)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (325)
.+..+++.++++++++++++|.+ |.++++|+++++++||++++++|+++..+.++ ..........+..+.....
T Consensus 5 ~~~~~~~~i~~~~~~~i~~~d~~---g~i~~~N~a~~~l~G~~~~e~~G~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 78 (349)
T 3a0r_A 5 HLRNFSESILESLETAIITLSKD---GRITEWNKKAEQLFGLKKENVLGRRLKDLPDF---EEIGSVAESVFENKEPVFL 78 (349)
T ss_dssp ----CCCSSGGGSSSEEEEEESS---SBCSCBCHHHHHHHSCCSTTTTTCBSTTSTTT---THHHHHHHHHHHHCCCCEE
T ss_pred HHHHHHHHHHhhhcCeEEEECCC---CCEEeeHHHHHHHhCCCHHHHcCcCHHHCcCh---hHHHHHHHHHHhcCCceee
Confidence 34456778999999999999999 99999999999999999999999988776322 2333444455555554433
Q ss_pred EEEEEecCCCEEEEEEEEEEeecCCCCce-EEEEEEEeccCcchhhhhcc
Q 020523 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRA-THFVAVQVPIVSRKHMRNSG 143 (325)
Q Consensus 95 e~~~~~~dg~~~~~~~~~~~~~~~~~g~~-~~~~~~~~DITe~k~~~~~~ 143 (325)
.. ..+...|+.++..|+.+ ..|.. .+++++.+|||++++++++.
T Consensus 79 ~~----~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~DiTe~~~~e~~~ 123 (349)
T 3a0r_A 79 NF----YKFGERYFNIRFSPFRN-AKTQLLEGVIITIDDVTELYKYEEER 123 (349)
T ss_dssp EC----CCBTTBCCEEEEEEECC-TTTTSSCEEEEEEECCSTTTTTTTTT
T ss_pred cc----cccCceEEEEEEEEEEc-CCCceeeEEEEEEEechHHHHHHHHH
Confidence 21 12233577888999987 56654 58999999999999875544
No 90
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=99.00 E-value=4.4e-10 Score=79.56 Aligned_cols=103 Identities=16% Similarity=0.154 Sum_probs=73.1
Q ss_pred hCCCeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHH-HHHh-CCCe---EEEEEEEe
Q 020523 26 ELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIRE-AIRE-ERPI---EVNLLNYK 100 (325)
Q Consensus 26 ~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~-~~~~-~~~~---~~e~~~~~ 100 (325)
..+++++++|.+ +|.++++|+++++++||++++++|+++..++++.+... ...+.. .... +... ..+....+
T Consensus 6 ~~~~~i~~~d~~--~g~I~~~N~aa~~l~G~~~~el~g~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (114)
T 1ll8_A 6 EFNKAIFTVDAK--TTEILVANDKACGLLGYSSQDLIGQKLTQFFLRSDSDV-VEALSEEHMEADGHAAVVFGTVVDIIS 82 (114)
T ss_dssp TTTCEEEEEETT--TCBEEEECTTHHHHHTCCTTTTTTSBGGGGSSCTTTHH-HHHTTSSTTSSSSCSSCCCSSSEEECC
T ss_pred CCCceEEEEECC--CCeEEEehHHHHHHhCCCHHHHcCCCHHHhcCcchhHH-HHHHHHHhhccCCcceeccCcEEEEEe
Confidence 345799999973 28999999999999999999999999888887754432 122111 1111 1111 23456678
Q ss_pred cCCCEEEEEEEEEEeecCCCCceEEEEEEEeccC
Q 020523 101 KDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (325)
Q Consensus 101 ~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 134 (325)
++|..+|+.+++.|+.+ ..+ .+++++++|++
T Consensus 83 ~dG~~~~v~~~~~~~~~-~~~--~~~v~~~~~~~ 113 (114)
T 1ll8_A 83 RSGEKIPVSVWMKRMRQ-ERR--LCCVVVLEPVE 113 (114)
T ss_dssp TTCCCEEEECCEECCBS-SSS--BEEEEEEEECC
T ss_pred cCCCEEEEEEEEEeecc-CCc--cEEEEEEeecC
Confidence 99999999999999976 333 36778888875
No 91
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=98.99 E-value=1.3e-08 Score=72.06 Aligned_cols=100 Identities=13% Similarity=0.077 Sum_probs=75.3
Q ss_pred HHHHhhCCCeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCc-ccCCCCChHHHHHHHHHHHhCCCeEEEEE-E
Q 020523 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM-FQGPRTNRRTIMEIREAIREERPIEVNLL-N 98 (325)
Q Consensus 21 ~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~ 98 (325)
..+++.++.|++++|.+ ++++++|++++++.|+++++++|+++.. +.+......+...+.+.+..|. ...... .
T Consensus 20 ~~~ld~l~~Gii~lD~~---g~I~~~N~~~e~~sG~~~~eviGk~~f~~~~~~~~~~~f~~rf~~~~~~g~-l~~~~~~v 95 (125)
T 1nwz_A 20 DGQLDGLAFGAIQLDGD---GNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCTDSPEFYGKFKEGVASGN-LNTMFEYT 95 (125)
T ss_dssp HHHHTTCSSEEEEEETT---CBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHHTC-CEEEEEEE
T ss_pred HHHHhccCceEEEECCC---CEEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCc-eeEEEEEE
Confidence 45799999999999999 9999999999999999999999999865 3444555666777888777766 443333 3
Q ss_pred EecCCCEEEEEEEEEEeecCCCCceEEEE
Q 020523 99 YKKDGTPFWMLFKMSLVFGKEDGRATHFV 127 (325)
Q Consensus 99 ~~~dg~~~~~~~~~~~~~~~~~g~~~~~~ 127 (325)
.+.+|+++++.+ ++... ++|...+++
T Consensus 96 ~~~~~~p~~v~i--~l~~~-~~~~~~~i~ 121 (125)
T 1nwz_A 96 FDYQMTPTKVKV--HMKKA-LSGDSYWVF 121 (125)
T ss_dssp ECTTSCCEEEEE--EEEEC-SSSSEEEEE
T ss_pred EcCCCCEEEEEE--EEEEc-CCCCEEEEE
Confidence 488888665554 45555 566655543
No 92
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=98.99 E-value=1e-09 Score=75.95 Aligned_cols=73 Identities=29% Similarity=0.576 Sum_probs=56.0
Q ss_pred CceEEecCCCCCCCeEEEehhhHHhhCCCcccccccc--cccccCCCCChHHHHHHHH----------hhccccCCCcee
Q 020523 252 QSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQN--CRFLNGVDTDTTVLYQVSI----------AISPYPKKKSIY 319 (325)
Q Consensus 252 ~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~--~~~l~~~~~~~~~~~~~~~----------e~~~~~kdG~~~ 319 (325)
.+|+++|...+||+|+++|+++++++||++++++|++ ...+.++.........+.+ ++...+++|+.+
T Consensus 2 ~~i~i~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (110)
T 1byw_A 2 RKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALLGAEERKVEIAFYRKDGSCF 81 (110)
T ss_dssp CEEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEE
T ss_pred CCEEEEeccCCCCcEEEECHHHHHHhCCCHHHHccCCCccccccCCcCCHHHHHHHHHHHhcCCCceEEEEEEcCCCCEE
Confidence 5789999864578999999999999999999999998 4555555555544444433 555678899999
Q ss_pred eEEee
Q 020523 320 MEYVR 324 (325)
Q Consensus 320 ~~~~~ 324 (325)
|+.++
T Consensus 82 ~~~~~ 86 (110)
T 1byw_A 82 LCLVD 86 (110)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98764
No 93
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=98.99 E-value=1.3e-08 Score=68.43 Aligned_cols=95 Identities=8% Similarity=0.086 Sum_probs=69.9
Q ss_pred CCCeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCCCeEEEEEEEecCCCEE
Q 020523 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPF 106 (325)
Q Consensus 27 ~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~ 106 (325)
++++++++|.+ |.++++|+++++++|++.++++|++...+ +. .......+...+..+..... ... ++...
T Consensus 1 ~~~~i~~~d~~---g~i~~~N~~~~~l~g~~~~~~~g~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~ 70 (96)
T 3a0s_A 1 METAIITLSKD---GRITEWNKKAEQLFGLKKENVLGRRLKDL--PD-FEEIGSVAESVFENKEPVFL--NFY--KFGER 70 (96)
T ss_dssp CCCEEEEEETT---SBEEEECHHHHHHHCCCHHHHTTSBGGGS--TT-CHHHHHHHHHHHHHTCCEEE--EEE--EETTE
T ss_pred CCceEEEEcCC---CCEeehhHHHHHHhCCCHHHhcCCCHHHC--cc-hHHHHHHHHHHhccCCeEEE--EEE--cCCcE
Confidence 46899999999 99999999999999999999999987766 22 23344445555555555432 222 34456
Q ss_pred EEEEEEEEeecCCCCc-eEEEEEEEec
Q 020523 107 WMLFKMSLVFGKEDGR-ATHFVAVQVP 132 (325)
Q Consensus 107 ~~~~~~~~~~~~~~g~-~~~~~~~~~D 132 (325)
|+.++..|+.+ .+|. +.+++++++|
T Consensus 71 ~~~~~~~p~~~-~~~~~~~g~v~~~~D 96 (96)
T 3a0s_A 71 YFNIRFSPFRN-AKTQLLEGVIITIDD 96 (96)
T ss_dssp EEEEEEEEEEC-TTTCCEEEEEEEEEC
T ss_pred EEEEEEEEeEc-CCCCeeeEEEEEecC
Confidence 88999999987 5554 5788888776
No 94
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=98.98 E-value=7.1e-10 Score=83.52 Aligned_cols=82 Identities=27% Similarity=0.453 Sum_probs=68.4
Q ss_pred hhhhHhhhhccCCceEEecCCCCCC---CeEEEehhhHHhhCCCcccccccccccccCCCCChHHHHHHHH---------
Q 020523 240 SSSLYISLGRIKQSFVLIDPHLPDM---PMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSI--------- 307 (325)
Q Consensus 240 ~~~l~~~~~~~~~~i~~~d~~~~dg---~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~--------- 307 (325)
...++.++++++++|+++|. +| +|+++|+++++++||+.++++|+++..+.++.........+..
T Consensus 24 ~~~~~~i~~~~~~~i~~~d~---~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (162)
T 3sw1_A 24 AQLLQSMVDASNDGIVVAEK---EGDDTILIYVNAAFEYLTGYSRDEILYQDCRFLQGDDRDQLGRARIRKAMAEGRPCR 100 (162)
T ss_dssp HHHHHHHHHTCSSEEEEEEE---ETTEEEEEEECHHHHHHHTCCHHHHTTSBGGGGTTTCCCCHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHhhccCcEEEEeC---CCCccEEEEECHHHHHHHCCCHHHHcCCCcceecCCCcCHHHHHHHHHHHhcCCCCc
Confidence 34578899999999999998 47 9999999999999999999999999988887766665555544
Q ss_pred -hhccccCCCceeeEEee
Q 020523 308 -AISPYPKKKSIYMEYVR 324 (325)
Q Consensus 308 -e~~~~~kdG~~~~~~~~ 324 (325)
++...+++|+.+|+.++
T Consensus 101 ~~~~~~~~~g~~~~~~~~ 118 (162)
T 3sw1_A 101 EVLRNYRKDGSAFWNELS 118 (162)
T ss_dssp EEEEEECTTCCEEEEEEE
T ss_pred ceEEEECCCCCEEEEEEE
Confidence 56667889999998764
No 95
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=98.97 E-value=1.7e-09 Score=84.14 Aligned_cols=108 Identities=14% Similarity=0.140 Sum_probs=79.7
Q ss_pred hHHHHHHHHHhhCCCeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCC-C-e
Q 020523 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER-P-I 92 (325)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~-~-~ 92 (325)
+....+..+++++++|++++|.+ |.++++|+++++++|++.++++|+++..++++... ...+..+. . .
T Consensus 77 ~~~~~l~~il~~~~~gvi~~D~~---g~I~~~N~aa~~llg~~~~~~~g~~~~~~~~~~~~-------~~~~~~~~~~~~ 146 (190)
T 2jhe_A 77 REHLALSALLEALPEPVLSVDMK---SKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNF-------LRWLESEPQDSH 146 (190)
T ss_dssp HHHHHHHHHHHHCSSCEEEECTT---CBEEEECHHHHHHHTSCHHHHTTSBGGGTSTTCCH-------HHHHHTCCCSCE
T ss_pred HHHHHHHHHHHhCCCcEEEEcCC---CCEEEEcHHHHHHhCCCHHHhcCccHHHHhCCCCH-------HHHHhcCCCCCc
Confidence 34567899999999999999999 99999999999999999999999998877655321 22333333 2 2
Q ss_pred EEEEEEEecCCCEEEEEEEEEEeecCCCCc----eEEEEEEEeccCcchh
Q 020523 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGR----ATHFVAVQVPIVSRKH 138 (325)
Q Consensus 93 ~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~----~~~~~~~~~DITe~k~ 138 (325)
..++. .+|. ++.++..|+.+ .+|. +.|++.+++|||++++
T Consensus 147 ~~~~~---~~g~--~~~~~~~pi~~-~~~~~~~~~~g~v~~~~DiTe~~~ 190 (190)
T 2jhe_A 147 NEHVV---INGQ--NFLMEITPVYL-QDENDQHVLTGAVVMLRSTIRMGR 190 (190)
T ss_dssp EEEEE---ETTE--EEEEEEEEETT-TTEEEEEEEE-HHHHHHHHTTTCC
T ss_pred ceEEE---ECCe--EEEEEEEEEEe-cCCCCcceEEeEEEEEeccchhcC
Confidence 22222 2564 45678889875 4555 6788888999999763
No 96
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=98.97 E-value=3.1e-10 Score=80.87 Aligned_cols=86 Identities=2% Similarity=-0.115 Sum_probs=66.0
Q ss_pred ccchhhhHhhhhccCCceEEecCCCCCCCeEEEehhhHHhhCCCcccccccc--cccccCCCCChHHHHHHHH-------
Q 020523 237 GFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQN--CRFLNGVDTDTTVLYQVSI------- 307 (325)
Q Consensus 237 ~~~~~~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~--~~~l~~~~~~~~~~~~~~~------- 307 (325)
......++.++++++++++++|.+ +|.++++|+++++++||++++++|++ +..+++|+........+..
T Consensus 7 ~~~~~~~~~~~~~~~~~i~~~d~~--~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (125)
T 3eeh_A 7 AKSERRVRELTEATNDILWEFTAD--LSEVLVINSAYEDIWGRSVAKLRENPHDFLNGIHPEDRELMKDTMQSLMDGESA 84 (125)
T ss_dssp ---CHHHHHHHSCCCCEEEEEETT--SSCEEEECTHHHHHHSSCHHHHHHCGGGGGGGBCHHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHhcCCceEEEEEcC--CCcEEEecHHHHHHHCCCHHHHccCcHHHHHhcCHHHHHHHHHHHHHHHcCCCc
Confidence 334567888999999999999984 27999999999999999999999987 4556666655544444433
Q ss_pred --hhccccCCCceeeEEee
Q 020523 308 --AISPYPKKKSIYMEYVR 324 (325)
Q Consensus 308 --e~~~~~kdG~~~~~~~~ 324 (325)
+++..+++|+.+|+.++
T Consensus 85 ~~e~~~~~~~g~~~~~~~~ 103 (125)
T 3eeh_A 85 DVECRVNATEEYQRWVWIQ 103 (125)
T ss_dssp EEEEEECGGGTTCEEEEEE
T ss_pred cEEEEEEcCCCCEEEEEEe
Confidence 66667889999998764
No 97
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=98.96 E-value=2.5e-10 Score=80.85 Aligned_cols=104 Identities=9% Similarity=0.083 Sum_probs=78.2
Q ss_pred hHHHHHHHHHhhCCCeEEEEcCCCCCCCEEEecHHHHHhcCC---ChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCCC
Q 020523 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGF---SRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP 91 (325)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~---~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (325)
.....++.++++++++++++|.+ |.++++|+++++++|+ +.++++|+++..++++.. +...+..+..
T Consensus 12 ~~~~~~~~il~~~~~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~ 81 (118)
T 2w0n_A 12 TLFEQRQAMLQSIKEGVVAVDDR---GEVTLINDAAQELLNYRKSQDDEKLSTLSHSWSQVVD-------VSEVLRDGTP 81 (118)
T ss_dssp TTHHHHHHHHHCCCCCCEEEBTT---TBCCCBCHHHHHHHCSCTTTTTSSCCCTTCCCSCTHH-------HHHHHHTTCC
T ss_pred HHHHHHHHHHhhccccEEEECCC---CcEeehhHHHHHHhCCCccChhhhhccCcccccCchh-------HHHHhccCce
Confidence 45567889999999999999999 9999999999999997 788999998777665421 3344444443
Q ss_pred eEEEEEEEecCCCEEEEEEEEEEeecCCCCceEEEEEEEeccC
Q 020523 92 IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (325)
Q Consensus 92 ~~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 134 (325)
..... ...+| .|+.++..|+.+ +|.+.+++++++|||
T Consensus 82 ~~~~~--~~~~~--~~~~~~~~p~~~--~g~~~g~v~~~~DiT 118 (118)
T 2w0n_A 82 RRDEE--ITIKD--RLLLINTVPVRS--NGVIIGAISTFRDKT 118 (118)
T ss_dssp CCCCC--EESSS--CEECCCEECCCC--SSCCCCEEECCCCCC
T ss_pred eccEE--EEECC--EEEEEeeceeee--CCEEEEEEEEEEeCC
Confidence 22111 12345 467778889875 677788899999997
No 98
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=98.96 E-value=2e-08 Score=71.27 Aligned_cols=100 Identities=14% Similarity=0.069 Sum_probs=74.7
Q ss_pred HHHHhhCCCeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCc-ccCCCCChHHHHHHHHHHHhCCCeEEEEE-E
Q 020523 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM-FQGPRTNRRTIMEIREAIREERPIEVNLL-N 98 (325)
Q Consensus 21 ~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~ 98 (325)
..+++.++.|++++|.+ +++++||++++++.|+++++++|+++.. +.+......+...+.+.+..|. ...... .
T Consensus 25 ~~~ld~l~~GiivlD~d---g~I~~~N~~~e~isG~s~eeviGk~~f~~~~p~~~~~~f~grf~~~~~~G~-l~~~~~yv 100 (129)
T 1mzu_A 25 TAEFDALPVGAIQVDGS---GVIHRYNRTESRLSGRIPERVIGRNFFTEVAPCTNIPAFSGRFMDGVTSGT-LDARFDFV 100 (129)
T ss_dssp CTTGGGCSSEEEEEETT---CBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHTSC-CEEEEEEE
T ss_pred HHHHhccCceEEEECCC---CeEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCc-eeEEEEEE
Confidence 34699999999999999 9999999999999999999999999865 3444555666777888888666 443333 3
Q ss_pred EecCCCEEEEEEEEEEeecCCCCceEEEE
Q 020523 99 YKKDGTPFWMLFKMSLVFGKEDGRATHFV 127 (325)
Q Consensus 99 ~~~dg~~~~~~~~~~~~~~~~~g~~~~~~ 127 (325)
.+.+|.++++. +++... ++|...+++
T Consensus 101 ~~~~~~p~~v~--i~l~~~-~~~~~~~i~ 126 (129)
T 1mzu_A 101 FDFQMAPVRVQ--IRMQNA-GVPDRYWIF 126 (129)
T ss_dssp EECSSCEEEEE--EEEEEC-SSTTEEEEE
T ss_pred EcCCCCEEEEE--EEEEEc-CCCCEEEEE
Confidence 47888865554 455555 566655543
No 99
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=98.96 E-value=1.2e-09 Score=80.00 Aligned_cols=82 Identities=40% Similarity=0.798 Sum_probs=66.7
Q ss_pred hHhhhhccCCceEEecCCCCCCCeEEEehhhHHhhCCCcccccccccccccCCCCChHHHHHHHH----------hhccc
Q 020523 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSI----------AISPY 312 (325)
Q Consensus 243 l~~~~~~~~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~----------e~~~~ 312 (325)
++.++++++++++++|...++|.|+++|+++++++||++++++|+++..+.++.........+.. ++...
T Consensus 4 l~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (146)
T 2v0u_A 4 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKIRDAIDNQTEVTVQLINY 83 (146)
T ss_dssp CCCTGGGSSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred HHHHHhcCCCcEEEEcCCCCCceEEEEcHHHHHHHCcCHHHHcCCCHHHhcCCcCChHHHHHHHHHHhcCCCcceEEEEE
Confidence 55678999999999997211479999999999999999999999999998888877665555544 55667
Q ss_pred cCCCceeeEEee
Q 020523 313 PKKKSIYMEYVR 324 (325)
Q Consensus 313 ~kdG~~~~~~~~ 324 (325)
+++|..+|+.++
T Consensus 84 ~~~g~~~~~~~~ 95 (146)
T 2v0u_A 84 TKSGKKFWNLFH 95 (146)
T ss_dssp CTTCCEEEEEEE
T ss_pred ecCCcEEEEEEE
Confidence 789998888764
No 100
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=98.96 E-value=3.5e-10 Score=84.43 Aligned_cols=61 Identities=15% Similarity=0.166 Sum_probs=50.9
Q ss_pred hHhhhhccCCceEEecCCCCCCCeEEEehhhHHhhCCCcccccccccccccCCCCChHHHHHHHH
Q 020523 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSI 307 (325)
Q Consensus 243 l~~~~~~~~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~ 307 (325)
|..+++++++||+++|. ||+|+++|+++++++|+++++++|+++.+++++ ....+.+.+++
T Consensus 24 l~~il~~~~~gi~v~D~---~g~I~~~N~a~~~~~G~~~~eviG~~~~~~~p~-~~~~~~~~l~~ 84 (152)
T 3mxq_A 24 LSELLDQLSFALCIVRN---DYVIVKVNEYFESRVIFDGETMQGKNILELFPE-SADYLKRKIDT 84 (152)
T ss_dssp HHHHHHHHCCEEEEEET---TSBEEEECHHHHHTSSSCHHHHTTSBHHHHSGG-GHHHHHHHHHH
T ss_pred HHHHHhcCCCCEEEEcC---CCEEEEECHHHHHHHCcCHHHHCCCCHHHhcCC-hHHHHHHHHHH
Confidence 56688999999999998 579999999999999999999999999999876 43333444444
No 101
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=98.95 E-value=2.1e-09 Score=77.92 Aligned_cols=83 Identities=25% Similarity=0.518 Sum_probs=63.7
Q ss_pred hhHhhhhccCCceEEecCCCCCCCeEEEehhhHHhhCCCcccccccc--cccccCCCCChHHHHHHHH----------hh
Q 020523 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQN--CRFLNGVDTDTTVLYQVSI----------AI 309 (325)
Q Consensus 242 ~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~--~~~l~~~~~~~~~~~~~~~----------e~ 309 (325)
.+...+++++++++++|...++|+|+++|+++++++||+.++++|++ ...+.++.........+.+ ++
T Consensus 20 ~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (138)
T 2l0w_A 20 TIIRKFEGQSRKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIAQALLGAEERKVEI 99 (138)
T ss_dssp HHHHHHTTTTSEEEEEESSSTTCBEEEECSHHHHHHSCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHTTCSSCEEEEE
T ss_pred HHHHHHhcCCCCEEEEecCCCCCEEEEeCHHHHHHhCCCHHHHcCCCCcccccCCcccchhHHHHHHHHHhhcCCceeEE
Confidence 35556777999999999832247999999999999999999999998 5666666666555555544 55
Q ss_pred ccccCCCceeeEEee
Q 020523 310 SPYPKKKSIYMEYVR 324 (325)
Q Consensus 310 ~~~~kdG~~~~~~~~ 324 (325)
...+++|+.+|+.++
T Consensus 100 ~~~~~~g~~~~~~~~ 114 (138)
T 2l0w_A 100 AFYRKDGSCFLCLVD 114 (138)
T ss_dssp EEECTTSCEEEEEEE
T ss_pred EEECCCCCEEEEEEE
Confidence 566789999887654
No 102
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=98.92 E-value=3.8e-10 Score=80.93 Aligned_cols=52 Identities=12% Similarity=0.138 Sum_probs=41.5
Q ss_pred hhhhHhhhhccCCceEEecCCCCCCCeEEEehhhHHhhCCCcccccccccccccC
Q 020523 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG 294 (325)
Q Consensus 240 ~~~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~ 294 (325)
...++.++++++++|+++|. +|+|+++|+++++++||++++++|+++.++++
T Consensus 18 ~~~~~~i~~~~~~~i~~~d~---~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~ 69 (125)
T 3fc7_A 18 RKKFESLVSDSPDGIVHLTT---NGTILSVNPSMAGRLGADPDTLVGQQLSAVMD 69 (125)
T ss_dssp --------CCSCCEEEEEET---TSBEEEECHHHHHHHTSCHHHHTTSBGGGSSC
T ss_pred HHHHHHHHhcCCCeEEEEcC---CCeEEEECHHHHHHhCCCHHHHcCccHHHhCC
Confidence 34577899999999999998 47999999999999999999999999999883
No 103
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=98.91 E-value=5.7e-10 Score=79.05 Aligned_cols=73 Identities=10% Similarity=-0.047 Sum_probs=58.4
Q ss_pred cCCceEEecCCCCCCCeEEEehhhHHhhCCCccccccc-ccccccCCCCChHHHHHHHH----------hhccccCCCce
Q 020523 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQ-NCRFLNGVDTDTTVLYQVSI----------AISPYPKKKSI 318 (325)
Q Consensus 250 ~~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~-~~~~l~~~~~~~~~~~~~~~----------e~~~~~kdG~~ 318 (325)
++++++.+|.. +|+++|+|+++++|+||++++++|. .+..+++|++.......+.+ |++.+++||+.
T Consensus 2 a~~giw~~d~~--~~~~~~~n~~~~~l~G~~~~e~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~ 79 (115)
T 3h9w_A 2 TKAIPWKINWQ--TMAFEYIGPQIEALLGWPQGSWKSVEDWATRMHPEDQEWVVNFCVKQSECGVDHEADYRALHRDGHY 79 (115)
T ss_dssp -CCEEEEEETT--TTEEEEECTHHHHHHCSCGGGCCBHHHHHHSBCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTTSCE
T ss_pred cceEEEEEEcC--CCcEEEEChhHHHHhCCChHHccCHHHHHHhcCHHHHHHHHHHHHHHHhcCCcccEEEEEEcCCCCE
Confidence 36789999974 5899999999999999999999994 23457778877666655554 77888999999
Q ss_pred eeEEee
Q 020523 319 YMEYVR 324 (325)
Q Consensus 319 ~~~~~~ 324 (325)
+|+..+
T Consensus 80 ~w~~~~ 85 (115)
T 3h9w_A 80 VWIRDV 85 (115)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 998764
No 104
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.90 E-value=1.4e-09 Score=76.85 Aligned_cols=78 Identities=15% Similarity=0.088 Sum_probs=58.1
Q ss_pred hHhhhhccCCceEEecCCCCCCCeEEEehhhHHhhCCCcccccccccccccCCCC-Ch-HHHHHHHH-------hhcccc
Q 020523 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDT-DT-TVLYQVSI-------AISPYP 313 (325)
Q Consensus 243 l~~~~~~~~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~-~~-~~~~~~~~-------e~~~~~ 313 (325)
...+++++++||+++|.+ |+|+++|+++++++||++++++|+++.++.++.. .. .....+.. ++...
T Consensus 9 ~~~il~~~~~~i~~~D~~---g~I~~~N~aa~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 84 (115)
T 3b33_A 9 PSAILNNMVTATLILDDG---LAIRYANPAAELLFSQSAKRIVEQSLSQLIQHASLDLALLTQPLQSGQSITDSDVTFV- 84 (115)
T ss_dssp HHHHHHHCSSEEEEECTT---CBEEEECHHHHHHTTSCHHHHTTCBHHHHCSEEECCTHHHHHHHHHCCCEEEEEEEEE-
T ss_pred HHHHHhhcCceEEEECCC---CcEEEECHHHHHHhCCCHHHHhCCCHHHHhCccchhhHHHHHHHHcCCcccCCceEEe-
Confidence 345899999999999984 7999999999999999999999999988765432 22 22222222 33333
Q ss_pred CCCceeeEEee
Q 020523 314 KKKSIYMEYVR 324 (325)
Q Consensus 314 kdG~~~~~~~~ 324 (325)
++|+.+|+.++
T Consensus 85 ~~g~~~~~~~~ 95 (115)
T 3b33_A 85 VDGRPLMLEVT 95 (115)
T ss_dssp ETTEEEEEEEE
T ss_pred cCCCEEEEEEE
Confidence 68988887654
No 105
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=98.89 E-value=1.3e-09 Score=77.71 Aligned_cols=62 Identities=13% Similarity=0.116 Sum_probs=51.8
Q ss_pred hhHhhhhccCCceEEecCCCCCCCeEEEehhhHHhhCCCcccccccccccccCCCCChHHHHHHH
Q 020523 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVS 306 (325)
Q Consensus 242 ~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~ 306 (325)
..+.++++++++|+++|. ||+|+++|+++++++||++++++|+++.+++++.........+.
T Consensus 13 ~~~~il~~~~~~i~~~D~---~g~i~~~N~a~~~l~g~~~~e~~G~~~~~~~~~~~~~~~~~~~~ 74 (118)
T 3fg8_A 13 GRENLYFQGGLGFMALDE---DLRIIYVNSGCLRHVRRSRDELLGRVVTEVLPETQGSYFDALCR 74 (118)
T ss_dssp CCCCSSSCTTCEEEEECT---TCBEEEECHHHHHHHTCCHHHHTTSBHHHHCGGGTTSHHHHHHH
T ss_pred hHHHHHhhCCceEEEECC---CCeEEEECHHHHHHhCCCHHHHcCCcHHHHcCccchHHHHHHHH
Confidence 355689999999999997 57999999999999999999999999999887665554444443
No 106
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=98.87 E-value=2.9e-08 Score=82.95 Aligned_cols=107 Identities=8% Similarity=0.040 Sum_probs=88.2
Q ss_pred CeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCCC---eEEEEEEEecCCCE
Q 020523 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP---IEVNLLNYKKDGTP 105 (325)
Q Consensus 29 ~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~e~~~~~~dg~~ 105 (325)
.-+...+.+ |.++++|+++..++||.+++++|+++..+++|+|...+...+.+.+..+.. ...+++++++||..
T Consensus 175 ~Fitrh~~d---G~~~yvs~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~~~~~f~s~~yR~~~kdG~~ 251 (317)
T 4dj3_A 175 IFTTTHTPG---CVFLEVDERAVPLLGYLPQDLIGTSILTYLHPEDRPLMVAIHQKVLKYAGHPPFEHSPVRFCTQNGEY 251 (317)
T ss_dssp EEEEEECTT---SBEEEECTTHHHHHSCCHHHHTTSBGGGGBCTTTTTHHHHHHHHHHHTTTSCCEECCCEEEECTTSCE
T ss_pred ceEEEecCC---CeEEEEChHHhhhcCcChHHHcCCCHHHeECHHHHHHHHHHHHHHHHcCCCccccceEEEEEccCCCE
Confidence 455667888 999999999999999999999999999999999988888888888876554 34678999999999
Q ss_pred EEEEEEEEEeecCCCCceEEEEEEEeccCcchh
Q 020523 106 FWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (325)
Q Consensus 106 ~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~ 138 (325)
+|+.....++.++.++.+..+++...-++....
T Consensus 252 vwvet~~~~~~np~s~~~e~II~~h~v~~~p~~ 284 (317)
T 4dj3_A 252 VILDSSWSSFVNPWSRKVSFIIGRHKVRTSPLN 284 (317)
T ss_dssp EEEEEEEEEEECSSSCCEEEEEEEEEECCCCSS
T ss_pred EEEEEEEEEEECCCCCcccEEEEEEEeccCCCC
Confidence 999999999887335677777777766665543
No 107
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=98.82 E-value=7.3e-09 Score=78.07 Aligned_cols=81 Identities=22% Similarity=0.216 Sum_probs=63.5
Q ss_pred hhhHhhhhccCCceEEecCCCCCCCeEEEehhhHHhhCCCcccccccccccccCCCCChHHHHHHHH-------------
Q 020523 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSI------------- 307 (325)
Q Consensus 241 ~~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~------------- 307 (325)
..+..++++++++++++|. +|.|+++|+++++++||+.++++|+++..++++.........+..
T Consensus 40 ~~~~~~l~~~~~~i~~~d~---~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (167)
T 1v9y_A 40 GIFFPALEQNMMGAVLINE---NDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVEGMS 116 (167)
T ss_dssp CCHHHHHHTCSSEEEEECT---TSBEEEECHHHHHHHSCCGGGTTTSBGGGGSCGGGTTTHHHHHHHHHC----------
T ss_pred HHHHHHHHhCCCCEEEECC---CCcEEEECHHHHHHhCCCHHHHcCCChhhccCccccchHHHHHHHHhhcCCCcccccc
Confidence 3477889999999999997 479999999999999999999999999988876654433332222
Q ss_pred -hhccccCCCceeeEEee
Q 020523 308 -AISPYPKKKSIYMEYVR 324 (325)
Q Consensus 308 -e~~~~~kdG~~~~~~~~ 324 (325)
++...+++|..+|+.++
T Consensus 117 ~~~~~~~~~g~~~~~~~~ 134 (167)
T 1v9y_A 117 RELQLEKKDGSKIWTRFA 134 (167)
T ss_dssp CEEEEECTTSCEEEEEEE
T ss_pred eEEEEEcCCCcEEEEEEE
Confidence 33446789999888764
No 108
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=98.77 E-value=7.2e-08 Score=80.33 Aligned_cols=106 Identities=8% Similarity=0.034 Sum_probs=88.1
Q ss_pred eEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCCC-eE-EEEEEEecCCCEEE
Q 020523 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP-IE-VNLLNYKKDGTPFW 107 (325)
Q Consensus 30 ~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~-~e~~~~~~dg~~~~ 107 (325)
.+...+.+ |.++++|+++..++||.+++++|+++..+++|+|...+...+.+.+..+.. .. .++++++++|..+|
T Consensus 167 Fitrh~~d---G~~~yvd~~~~~lLGY~peELig~s~~~~iHpdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~vw 243 (309)
T 3gdi_A 167 FTTTHTPN---CLFQAVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQAGGQPFDYSPIRFRTRNGEYIT 243 (309)
T ss_dssp EEEEECTT---CBEEEECTTHHHHHSCCHHHHTTSBHHHHBCTTSHHHHHHHHHHHHHTTTCCEEEEEEEEECTTSCEEE
T ss_pred EEEEecCC---CeEEEECcccccccCcCHHHHcCCCHHHhCCHHHHHHHHHHHHHHHhcCCceeeceEEEEEccCCCEEE
Confidence 56667888 999999999999999999999999998999999987777777777775443 44 58899999999999
Q ss_pred EEEEEEEeecCCCCceEEEEEEEeccCcchh
Q 020523 108 MLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (325)
Q Consensus 108 ~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~ 138 (325)
+.....++.++.++++..+++...-++....
T Consensus 244 vet~~~~~~np~s~~~e~ii~~h~v~~gp~~ 274 (309)
T 3gdi_A 244 LDTSWSSFINPWSRKISFIIGRHKVRVGPLN 274 (309)
T ss_dssp EEEEEEEEECTTTCCEEEEEEEEEEEECCSS
T ss_pred EEEEEEEEECCCCCcccEEEEEEEEccCCCC
Confidence 9999988876346778888888887777544
No 109
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=98.75 E-value=6.8e-09 Score=77.83 Aligned_cols=60 Identities=17% Similarity=0.179 Sum_probs=49.9
Q ss_pred hhhHhhhhccCCceEEec-CCCCCCCeEEEehhhHHhhCCCcccccccccccccCCCCChHHHHHH
Q 020523 241 SSLYISLGRIKQSFVLID-PHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQV 305 (325)
Q Consensus 241 ~~l~~~~~~~~~~i~~~d-~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~ 305 (325)
+.|+.++++++++++++| . ||+|+++|+++++++||+ +++|+++.+++++.........+
T Consensus 17 ~~~~~~~~~~~~~i~~~d~~---~~~i~~~N~~~~~~~g~~--~~~G~~~~~~~~~~~~~~~~~~~ 77 (158)
T 3k3c_A 17 EDVRRIFEHIPAILVGLEGP---DHRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEML 77 (158)
T ss_dssp HHHHHHHHHCSSEEEEEETT---TTEEEEECHHHHHHCTTC--CSTTSBHHHHSGGGGGTTHHHHH
T ss_pred HHHHHHHhcCCceEEEEECC---CcEeHHHHHHHHHHcCCc--hhcCCcHHHhCCchhHHHHHHHH
Confidence 458889999999999999 6 589999999999999999 99999999988776544333333
No 110
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=98.73 E-value=5.5e-08 Score=81.39 Aligned_cols=107 Identities=9% Similarity=0.046 Sum_probs=88.0
Q ss_pred CeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhC-CCe-EEEEEEEecCCCEE
Q 020523 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE-RPI-EVNLLNYKKDGTPF 106 (325)
Q Consensus 29 ~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~-~~e~~~~~~dg~~~ 106 (325)
.-+...+.+ |.++++|+++..++||.+++++|+++..+++|+|...+...+.+.+..+ ... ..++++.+++|..+
T Consensus 177 ~Fitrh~~d---G~~~yvd~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~v 253 (320)
T 4dj2_A 177 IFTTRHTPS---CLFQDVDERAAPLLGYLPQDLLGAPVLLFLHPEDRPLMLAIHKKILQLAGQPFDHSPIRFCARNGEYV 253 (320)
T ss_dssp EEEEEECTT---CBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHTTSSSCCEECCCEEEECSSSCEE
T ss_pred eEEEEecCC---ceEEEcCcceeccCCcChHHHcCCcHHHhCCHHHHHHHHHHHHHHHhcCCCcccceEEEEEccCCCEE
Confidence 345667888 9999999999999999999999999999999998877777777776643 344 35789999999999
Q ss_pred EEEEEEEEeecCCCCceEEEEEEEeccCcchh
Q 020523 107 WMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (325)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~ 138 (325)
|+.....++.++.++++..+++...-++....
T Consensus 254 wvet~~~~~~np~s~~~e~II~~h~v~~gp~~ 285 (320)
T 4dj2_A 254 TMDTSWAGFVHPWSRKVAFVLGRHKVRTAPLN 285 (320)
T ss_dssp EEECEEEEEECTTTCSEEEEEEEEEESSCCSS
T ss_pred EEEEEEEEEECCCCCCccEEEEEEEEccCCCC
Confidence 99999988887346778888888887777654
No 111
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=98.73 E-value=1.1e-08 Score=94.21 Aligned_cols=79 Identities=13% Similarity=0.012 Sum_probs=65.7
Q ss_pred hhHhhhhccCCceEEecCCCCCCCeEEEehhhHHhhCCCcccccccccccccCCCCChHHHHHHHH----------hhcc
Q 020523 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSI----------AISP 311 (325)
Q Consensus 242 ~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~----------e~~~ 311 (325)
.+...+++++++|+++|. +|+|+++|++|++|+||+++|++|++...+.+++.... +..+.+ |++.
T Consensus 519 ~~~~lle~a~~~i~~~D~---~grI~~~N~a~~~l~G~s~~e~~g~~~l~~~~~~~~~~-~~~i~~~l~~g~~~~~E~~~ 594 (635)
T 4eho_A 519 QASSQVHASMQPVLITDA---EGRILLMNDSFRDMLPAGSPSAVHLDDLAGFFVESNDF-LRNVAELIDHGRGWRGEVLL 594 (635)
T ss_dssp SHHHHHHHCSSCCEEEET---TCCEEEECHHHHTTSCSSCCCCCSSGGGTTSSSSCTHH-HHHHHHHHHHCCCBCCCCEE
T ss_pred HHHHHHHhCCCcEEEECC---CCeEeeHHHHHHHHHCcChHHHcCcchhhccCCCCHHH-HHHHHHHHHcCCcEEEEEEE
Confidence 356778999999999998 47999999999999999999999998877777766543 344433 8888
Q ss_pred ccCCCceeeEEee
Q 020523 312 YPKKKSIYMEYVR 324 (325)
Q Consensus 312 ~~kdG~~~~~~~~ 324 (325)
++|||+.+|+.++
T Consensus 595 ~~~dG~~~~~~~~ 607 (635)
T 4eho_A 595 RGAGNRPLPLAVR 607 (635)
T ss_dssp CCSSSSCEECCCC
T ss_pred EccCCcEEEEEEE
Confidence 9999999998765
No 112
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=98.72 E-value=9e-09 Score=79.64 Aligned_cols=54 Identities=19% Similarity=0.191 Sum_probs=47.6
Q ss_pred hhhHhhhhccCCceEEec-CCCCCCCeEEEehhhHHhhCCCcccccccccccccCCCCCh
Q 020523 241 SSLYISLGRIKQSFVLID-PHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299 (325)
Q Consensus 241 ~~l~~~~~~~~~~i~~~d-~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~ 299 (325)
+.|+.++++++++|+++| . ||+|+++|++|++++||+ +++|+++.+++++....
T Consensus 37 ~~l~~l~~~~~~~i~~~d~~---~g~i~~~N~a~~~l~G~~--~~~G~~~~~~~~~~~~~ 91 (185)
T 3kx0_X 37 EDVRRIFEHIPAILVGLEGP---DHRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQ 91 (185)
T ss_dssp HHHHHHHHHCSSEEEEEETT---TTEEEEECHHHHHHCCCC--SCTTSBHHHHCTTSCSS
T ss_pred HHHHHHHhcCCceEEEEECC---CcEEEEEcHHHHHHcCCc--cccCCcHHHHCCchhhh
Confidence 457889999999999999 6 589999999999999999 99999999988766543
No 113
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=98.66 E-value=2.5e-08 Score=71.34 Aligned_cols=51 Identities=16% Similarity=0.451 Sum_probs=46.2
Q ss_pred hhhHhhhhccCCceEEecCCCCCCCeEEEehhhHHhhC------------CCcccccccccccccC
Q 020523 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG------------YDRNEVVGQNCRFLNG 294 (325)
Q Consensus 241 ~~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~a~~~~~G------------y~~~e~iG~~~~~l~~ 294 (325)
.+++.+++++++||+++|. +|+|+++|++|++|+| |++++++|+++..+++
T Consensus 5 ~rl~~il~~~~~gviv~D~---~g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~~~~~~~~ 67 (121)
T 4hi4_A 5 ARIASALDNVSANVMIADN---DLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHK 67 (121)
T ss_dssp HHHHHHHTTSSSEEEEEET---TCBEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTCBGGGGCS
T ss_pred HHHHHHHhcCCccEEEEcC---CCeEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCCCHHHhcC
Confidence 4578899999999999998 4799999999999995 9999999999988874
No 114
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=98.61 E-value=4.2e-08 Score=65.85 Aligned_cols=39 Identities=15% Similarity=0.253 Sum_probs=36.4
Q ss_pred CCceEEecCCCCCCCeEEEehhhHHhhCCCcccccccccccc
Q 020523 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFL 292 (325)
Q Consensus 251 ~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l 292 (325)
+++|+++|. +|+|+++|+++++++||++++++|+++..+
T Consensus 2 ~~~i~~~d~---~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~ 40 (96)
T 3a0s_A 2 ETAIITLSK---DGRITEWNKKAEQLFGLKKENVLGRRLKDL 40 (96)
T ss_dssp CCEEEEEET---TSBEEEECHHHHHHHCCCHHHHTTSBGGGS
T ss_pred CceEEEEcC---CCCEeehhHHHHHHhCCCHHHhcCCCHHHC
Confidence 689999997 479999999999999999999999999887
No 115
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=98.46 E-value=1.8e-07 Score=75.10 Aligned_cols=51 Identities=14% Similarity=0.411 Sum_probs=46.4
Q ss_pred hhhHhhhhccCCceEEecCCCCCCCeEEEehhhHHhh------------CCCcccccccccccccC
Q 020523 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLT------------GYDRNEVVGQNCRFLNG 294 (325)
Q Consensus 241 ~~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~a~~~~~------------Gy~~~e~iG~~~~~l~~ 294 (325)
.++..++++++++|+++|+ ||+|+|+|++|++++ ||++++++|+++..+++
T Consensus 22 ~~l~~iLd~~~~~vii~D~---~g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~eliG~~~~~~~~ 84 (233)
T 3vol_A 22 ARIKSALDNVSANVMIADN---DLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHK 84 (233)
T ss_dssp HHHHHHHTTSSSEEEEEET---TSBEEEECHHHHHHHHHTHHHHHTTCTTCCTTSCTTCBGGGGSS
T ss_pred HHHHHHHhcCCCcEEEECC---CCcEEEecHHHHHHHHHHHHHHHhhcCCCCHHHHcCCCHHHHcC
Confidence 4577889999999999998 579999999999998 89999999999998874
No 116
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=98.43 E-value=1.4e-07 Score=66.28 Aligned_cols=54 Identities=20% Similarity=0.170 Sum_probs=47.1
Q ss_pred hhhhHhhhhccCCceEEecCCCCCCCeEEEehhhHHhhCC---CcccccccccccccCCC
Q 020523 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGY---DRNEVVGQNCRFLNGVD 296 (325)
Q Consensus 240 ~~~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy---~~~e~iG~~~~~l~~~~ 296 (325)
...++.++++++++|+++|. +|+|+++|+++++++|| ++++++|+++..+.++.
T Consensus 14 ~~~~~~il~~~~~~i~~~d~---~g~i~~~N~~~~~~~g~~~~~~~~~~g~~~~~~~~~~ 70 (118)
T 2w0n_A 14 FEQRQAMLQSIKEGVVAVDD---RGEVTLINDAAQELLNYRKSQDDEKLSTLSHSWSQVV 70 (118)
T ss_dssp HHHHHHHHHCCCCCCEEEBT---TTBCCCBCHHHHHHHCSCTTTTTSSCCCTTCCCSCTH
T ss_pred HHHHHHHHhhccccEEEECC---CCcEeehhHHHHHHhCCCccChhhhhccCcccccCch
Confidence 34577899999999999997 47999999999999998 88999999998887543
No 117
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=98.43 E-value=6.4e-08 Score=82.68 Aligned_cols=52 Identities=13% Similarity=0.157 Sum_probs=45.7
Q ss_pred hhhHhhhhccCCceEEecCCCCCCCeEEEehhhHHhhCCCcccccccccccccCC
Q 020523 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGV 295 (325)
Q Consensus 241 ~~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~ 295 (325)
..++.++++++++|+++|. ||+|+++|+++++++||++++++|+++.++.++
T Consensus 8 ~~~~~i~~~~~~~i~~~d~---~g~i~~~N~a~~~l~G~~~~e~~G~~~~~~~~~ 59 (349)
T 3a0r_A 8 NFSESILESLETAIITLSK---DGRITEWNKKAEQLFGLKKENVLGRRLKDLPDF 59 (349)
T ss_dssp -CCCSSGGGSSSEEEEEES---SSBCSCBCHHHHHHHSCCSTTTTTCBSTTSTTT
T ss_pred HHHHHHHhhhcCeEEEECC---CCCEEeeHHHHHHHhCCCHHHHcCcCHHHCcCh
Confidence 3466789999999999998 579999999999999999999999999888433
No 118
>2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A
Probab=97.66 E-value=7e-08 Score=80.59 Aligned_cols=112 Identities=13% Similarity=0.090 Sum_probs=75.5
Q ss_pred HHhhCCCeEEEEcCCCCCCCEEEecHHHHHhcC---CChhhhcCCCCCcccCCC---CCh--HHHHHHHHHHHh-CCCeE
Q 020523 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSG---FSRAEIIGRNGRMFQGPR---TNR--RTIMEIREAIRE-ERPIE 93 (325)
Q Consensus 23 ~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G---~~~~e~~g~~~~~l~~~~---~~~--~~~~~~~~~~~~-~~~~~ 93 (325)
+++.+++|++++|.+ |+++++|++++++++ ++ ++++|+++..+++.. ... .+...+..++.+ +....
T Consensus 175 ~~~~~~dGIivvD~~---G~Ii~~N~aA~~ll~~lG~~-~~~iGk~l~el~~~~~~~~~~~~~~~~~l~~vl~~~~~~~~ 250 (305)
T 2ykf_A 175 SSPRAGDGFIRLDVD---GVVSYASPNALSAYHRMGLT-TELEGVNLIDATRPLISDPFEAHEVDEHVQDLLAGDGKGMR 250 (305)
Confidence 356899999999999 999999999999985 44 688999887766432 100 111222223333 22222
Q ss_pred EEEEEEecCCCEEEEEEEEEEeecCCCCceEEEEEEEeccCcchhhhhccCC
Q 020523 94 VNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMS 145 (325)
Q Consensus 94 ~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~~~~~~~~ 145 (325)
.+.. .. ..++.++..|+.+ +|.+.|.+.+++|||+.++.++++..
T Consensus 251 ~ei~---~~--~~~l~v~~~Pi~~--~g~~~G~Vvv~rDITE~~~lE~eL~~ 295 (305)
T 2ykf_A 251 MEVD---AG--GATVLLRTLPLVV--AGRNVGAAILIRDVTEVKRRDRALIS 295 (305)
Confidence 2211 12 2456778889976 57888999999999999998666543
No 119
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=98.30 E-value=4.8e-07 Score=67.28 Aligned_cols=52 Identities=12% Similarity=0.151 Sum_probs=45.7
Q ss_pred hhhHhhhhccCCceEEecCCCCCCCeEEEehh---hHHhhCCCcccccccccccccCCC
Q 020523 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDA---FLKLTGYDRNEVVGQNCRFLNGVD 296 (325)
Q Consensus 241 ~~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~a---~~~~~Gy~~~e~iG~~~~~l~~~~ 296 (325)
..|..++++++++|+++|.+ |+|+|+|++ +++++| ..++++|+++.+++++.
T Consensus 19 ~~l~~IL~~~~~gI~~vD~~---g~I~~~N~a~~~~~~i~g-~~~~~iGr~v~~~~~~~ 73 (151)
T 2qkp_A 19 EQANLILNHLPLEITFVNKD---DIFQYYNDSVPAAEMVFK-RTPSQVGRNVELCHPPK 73 (151)
T ss_dssp HHHHHHHHHSSSEEEEEETT---SBEEEECCCSCGGGCSSC-CCGGGTTSBGGGSSCHH
T ss_pred HHHHHHHHhCCCceEEEcCC---CeEEEEeCCCchhhhhcC-CCHHHcCCCHHHhCCHH
Confidence 45888999999999999985 799999999 999999 66789999999877533
No 120
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=98.29 E-value=7.6e-07 Score=68.92 Aligned_cols=53 Identities=15% Similarity=0.066 Sum_probs=47.9
Q ss_pred hhhHhhhhccCCceEEecCCCCCCCeEEEehhhHHhhCCCcccccccccccccCCC
Q 020523 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296 (325)
Q Consensus 241 ~~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~ 296 (325)
..+..+++++++||+++|. +|+|+++|+++++++|++.++++|+++..+.++.
T Consensus 80 ~~l~~il~~~~~gvi~~D~---~g~I~~~N~aa~~llg~~~~~~~g~~~~~~~~~~ 132 (190)
T 2jhe_A 80 LALSALLEALPEPVLSVDM---KSKVDMANPASCQLFGQKLDRLRNHTAAQLINGF 132 (190)
T ss_dssp HHHHHHHHHCSSCEEEECT---TCBEEEECHHHHHHHTSCHHHHTTSBGGGTSTTC
T ss_pred HHHHHHHHhCCCcEEEEcC---CCCEEEEcHHHHHHhCCCHHHhcCccHHHHhCCC
Confidence 4577899999999999998 4799999999999999999999999999887654
No 121
>2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A
Probab=97.38 E-value=4e-07 Score=76.03 Aligned_cols=47 Identities=23% Similarity=0.138 Sum_probs=39.9
Q ss_pred hhhhccCCceEEecCCCCCCCeEEEehhhHHhhC---CCcccccccccccccCC
Q 020523 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG---YDRNEVVGQNCRFLNGV 295 (325)
Q Consensus 245 ~~~~~~~~~i~~~d~~~~dg~i~~~N~a~~~~~G---y~~~e~iG~~~~~l~~~ 295 (325)
.+++++++||+++|.+ |+|+++|++++++|| ++ ++++|+++.++.++
T Consensus 174 ~~~~~~~dGIivvD~~---G~Ii~~N~aA~~ll~~lG~~-~~~iGk~l~el~~~ 223 (305)
T 2ykf_A 174 RSSPRAGDGFIRLDVD---GVVSYASPNALSAYHRMGLT-TELEGVNLIDATRP 223 (305)
Confidence 3577889999999984 799999999999985 54 78999999887754
No 122
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=97.77 E-value=1.9e-05 Score=67.78 Aligned_cols=53 Identities=11% Similarity=0.116 Sum_probs=47.2
Q ss_pred chhhhHhhhhccCCceEEecCCCCCCCeEEEehhhHHhhCCCcccccccccccccCCC
Q 020523 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296 (325)
Q Consensus 239 ~~~~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~ 296 (325)
....+..+++++++||+++|.+ |+|+++|++ +++| +++++++|+++.+++++.
T Consensus 237 ~~~~l~~IL~~l~dgIivvD~~---g~I~~~N~a-e~i~-~~~~e~iGr~v~~~~p~~ 289 (369)
T 3cax_A 237 NIEELKAIFEALPVDVTFIDKD---DRVRFFSPG-ERIF-TRTPSVLGRPVQLCHPPK 289 (369)
T ss_dssp CHHHHHHHHHHSSSEEEEECTT---SBEEEECCS-SCSS-CCCGGGTTCBTTTSSCGG
T ss_pred hHHHHHHHHHhCCCcEEEECCC---CcEEEEcCH-HHcc-CChHHHcCCcHHHHCChh
Confidence 3456889999999999999984 799999999 9999 999999999999887643
No 123
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=97.71 E-value=0.00011 Score=51.74 Aligned_cols=102 Identities=11% Similarity=0.106 Sum_probs=77.1
Q ss_pred EEEEcCCCCCCCEEEecHHHHHhcCCCh--hhhcCCCCCcccCCCCCh--HHHHHHHHHHHhCCCeEEEEEEEecCCCEE
Q 020523 31 FTITDPSISGHPIVFASRGFLKMSGFSR--AEIIGRNGRMFQGPRTNR--RTIMEIREAIREERPIEVNLLNYKKDGTPF 106 (325)
Q Consensus 31 i~~~d~~~~~~~i~~~N~~~~~~~G~~~--~e~~g~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~ 106 (325)
+.-.|.+ |+++++...... .++.. ++++|+.+.+++++.|.. .+...+.+++..|......+++..++|..+
T Consensus 10 ~sRh~~d---GKf~~vDq~~~r-~~~~~g~qdLlGrsiy~f~H~~D~~~s~l~~h~~~vl~~Gq~~S~~YRfr~k~g~~V 85 (132)
T 1oj5_A 10 MTKQDTT---GKIISIDTSSLR-AAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVMTRGTASSPSYRFILNDGTML 85 (132)
T ss_dssp EEEECTT---CCEEEEECHHHH-TTCCSCHHHHHHHHHHHHTSCBTTBCCHHHHHHHHHHHHSEEECCCEEEECTTSCEE
T ss_pred EEeecCC---CcEEEEeccccc-ccccccHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHcCCccccceEEEecCCcEE
Confidence 4456788 999999998874 67777 899999999999999855 778888888887776666788889999999
Q ss_pred EEEEEEEEeecCCCCceEEEEEEEeccCcc
Q 020523 107 WMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (325)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~~~~~~~DITe~ 136 (325)
|+......++++...++..++++-.=+.+.
T Consensus 86 ~~qT~sk~f~np~t~e~e~Ivs~n~v~r~~ 115 (132)
T 1oj5_A 86 SAHTRCKLCYPQSPDMQPFIMGIHIIDREH 115 (132)
T ss_dssp EEEEEEEEECC----CCCEEEEEEEEECC-
T ss_pred EEEEEEEEecCCCCCCCCEEEEEEEEEcCC
Confidence 999988888763345555666655444443
No 124
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=97.42 E-value=8.4e-05 Score=52.37 Aligned_cols=59 Identities=3% Similarity=-0.093 Sum_probs=47.1
Q ss_pred CCCeEEEehhhHHhhCCCc--ccccccccccccCCCCCh--HHHHHHHH----------hhccccCCCceeeEE
Q 020523 263 DMPMVYASDAFLKLTGYDR--NEVVGQNCRFLNGVDTDT--TVLYQVSI----------AISPYPKKKSIYMEY 322 (325)
Q Consensus 263 dg~i~~~N~a~~~~~Gy~~--~e~iG~~~~~l~~~~~~~--~~~~~~~~----------e~~~~~kdG~~~~~~ 322 (325)
||+|+++..+..+ .+|.+ +|++|+++.+++++++.. ...+...+ -++++.|||+..|+.
T Consensus 16 dGKf~~vDq~~~r-~~~~~g~qdLlGrsiy~f~H~~D~~~s~l~~h~~~vl~~Gq~~S~~YRfr~k~g~~V~~q 88 (132)
T 1oj5_A 16 TGKIISIDTSSLR-AAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVMTRGTASSPSYRFILNDGTMLSAH 88 (132)
T ss_dssp TCCEEEEECHHHH-TTCCSCHHHHHHHHHHHHTSCBTTBCCHHHHHHHHHHHHSEEECCCEEEECTTSCEEEEE
T ss_pred CCcEEEEeccccc-ccccccHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHcCCccccceEEEecCCcEEEEE
Confidence 7999999999874 77888 899999999999998854 44443333 677777999988875
No 125
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=96.39 E-value=0.0022 Score=53.72 Aligned_cols=50 Identities=6% Similarity=0.097 Sum_probs=39.3
Q ss_pred CceEE-ecCCCCCCCeEEEehhhHHhhCCCcccccccccccccCCCCChHHHH
Q 020523 252 QSFVL-IDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLY 303 (325)
Q Consensus 252 ~~i~~-~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~ 303 (325)
-|+++ ++. .+++|+.+|..+++++|+++++++|+++.++++|+....+.+
T Consensus 42 ~G~Ll~~~~--~~~~i~~~S~N~~~~lg~~~~~llG~~l~~ll~~~~~~~l~~ 92 (337)
T 2ool_A 42 HGYLFVVSE--TDLRIASVSANVEDLLRQPPASLLNVPIAHYLTAASAARLTH 92 (337)
T ss_dssp TSEEEEECT--TTCBEEEEETTHHHHHSSCGGGGTTCBGGGGBCHHHHHHHHH
T ss_pred CEEEEEEEC--CCCEEEEEehhHHHHHCcCHHHHcCCCHHHHcCHHHHHHHHH
Confidence 45544 454 368999999999999999999999999999997755444433
No 126
>4ew7_A Conjugative transfer: regulation; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology; 1.67A {Salmonella enterica subsp}
Probab=91.21 E-value=0.52 Score=31.10 Aligned_cols=34 Identities=15% Similarity=0.198 Sum_probs=28.6
Q ss_pred hHhhhhccCCceEEecCCCCCCCeEEEehhhHHhhCC
Q 020523 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGY 279 (325)
Q Consensus 243 l~~~~~~~~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy 279 (325)
.+.+..++|.++++-+.++ +|+|+|.+|.+||-.
T Consensus 22 iq~iY~nSPVpVCVRNq~R---kilYaN~aF~elF~K 55 (127)
T 4ew7_A 22 IQDIYKNSPVPVCVRNQSR---KIIYANGAFIELFSK 55 (127)
T ss_dssp HHHHHTTCSSCEEEECTTS---CEEEECHHHHHHTTS
T ss_pred HHhhhcCCCccEEEecccc---eEEEecchHHHHhhc
Confidence 4557778899999999875 899999999999543
No 127
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=89.61 E-value=0.42 Score=40.00 Aligned_cols=34 Identities=9% Similarity=-0.032 Sum_probs=30.8
Q ss_pred CCCEEEecHHHHHhcCCChhhhcCCCCCcccCCC
Q 020523 40 GHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPR 73 (325)
Q Consensus 40 ~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~ 73 (325)
+++++.+|..+..++|+++++++|+++..++++.
T Consensus 52 ~~~i~~~S~N~~~~lg~~~~~llG~~l~~ll~~~ 85 (337)
T 2ool_A 52 DLRIASVSANVEDLLRQPPASLLNVPIAHYLTAA 85 (337)
T ss_dssp TCBEEEEETTHHHHHSSCGGGGTTCBGGGGBCHH
T ss_pred CCEEEEEehhHHHHHCcCHHHHcCCCHHHHcCHH
Confidence 4889999999999999999999999988888764
No 128
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=85.16 E-value=0.48 Score=39.50 Aligned_cols=42 Identities=17% Similarity=0.072 Sum_probs=35.4
Q ss_pred Cce-EEecCCCCCCCeEEEehhhHHhhCCCcccccccccccccCC
Q 020523 252 QSF-VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGV 295 (325)
Q Consensus 252 ~~i-~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~ 295 (325)
-|+ ++++.. |++|+.++..+.+++|.++++++|+++..++++
T Consensus 52 hG~LL~l~~~--~~~I~~~S~N~~~~lg~~~~~llG~~l~~ll~~ 94 (343)
T 3s7o_A 52 HGALLTADGH--SGEVLQMSLNAATFLGQEPTVLRGQTLAALLPE 94 (343)
T ss_dssp TSEEEEEETT--TCBEEEEETTHHHHHSSCHHHHTTCBHHHHSTT
T ss_pred CeEEEEEECC--CCEEEEEcccHHHHhCcChHHHcCCCHHHHHhH
Confidence 344 445553 689999999999999999999999999999876
No 129
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=81.23 E-value=0.71 Score=38.32 Aligned_cols=44 Identities=23% Similarity=0.382 Sum_probs=35.7
Q ss_pred CceE-EecCCCCCCCeEEEehhhHHhhCCCcccccccccccccCCCCC
Q 020523 252 QSFV-LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298 (325)
Q Consensus 252 ~~i~-~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~ 298 (325)
-|++ ++| . |++|+.++..+.+++|.++++++|+++..++++...
T Consensus 29 hG~Ll~~~-~--~~~I~~~S~N~~~~lg~~~~~~lG~~l~~ll~~~~~ 73 (327)
T 4e04_A 29 HGLLLALA-A--DMTIVAGSDNLPELTGLAIGALIGRSAADVFDSETH 73 (327)
T ss_dssp TSEEEEEC-T--TCBEEEEETTHHHHHSCCHHHHTTCBHHHHBCHHHH
T ss_pred CeEEEEEc-C--CCeEEEEcccHHHHhCCChHhhcCCCHHHHcCHHHH
Confidence 3444 445 2 789999999999999999999999999998865433
No 130
>4ew7_A Conjugative transfer: regulation; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology; 1.67A {Salmonella enterica subsp}
Probab=76.57 E-value=14 Score=24.46 Aligned_cols=94 Identities=11% Similarity=0.175 Sum_probs=55.8
Q ss_pred HHHHHHHHHhhCCCeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHH-HHHHhCCCeEE
Q 020523 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR-EAIREERPIEV 94 (325)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~ 94 (325)
.....+.+..++|..+.+-+.. ..++|+|.+|..+|.......-|.+....- .+.....+. .+..-|....+
T Consensus 18 ~iL~iq~iY~nSPVpVCVRNq~---RkilYaN~aF~elF~Ked~~~sg~S~~~~~----vE~~LS~LELeCqsLGhG~af 90 (127)
T 4ew7_A 18 YILSIQDIYKNSPVPVCVRNQS---RKIIYANGAFIELFSKEDQPLSGDSYNRYG----VEVFLSSLELECQSLGHGAAF 90 (127)
T ss_dssp HHHHHHHHHTTCSSCEEEECTT---SCEEEECHHHHHHTTSCCCGGGCTTSSHHH----HHHHHHHHHHHHHHHCTTCEE
T ss_pred HHHhHHhhhcCCCccEEEeccc---ceEEEecchHHHHhhcccCcccCcccceee----ehhhHHHHHHHHHhhcCCceE
Confidence 3345678899999999999999 999999999999976554444444322110 011111111 22233333332
Q ss_pred EEEEEecCCCEEEEEEEEEEeec
Q 020523 95 NLLNYKKDGTPFWMLFKMSLVFG 117 (325)
Q Consensus 95 e~~~~~~dg~~~~~~~~~~~~~~ 117 (325)
.+...-.|+.+.+......+.+
T Consensus 91 -~r~Fn~~~e~yQIRmE~iSf~~ 112 (127)
T 4ew7_A 91 -CRRFNFHGEIYQIRMENISFDN 112 (127)
T ss_dssp -EEEEEETTEEEEEEEEEEECTT
T ss_pred -EEEeecCCceEEEEEEEeeecC
Confidence 2334556777776666665544
No 131
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=75.93 E-value=1.1 Score=39.79 Aligned_cols=43 Identities=12% Similarity=0.192 Sum_probs=35.4
Q ss_pred Cce-EEecCCCCCCCeEEEehhhHHhhCCCcccccccccccccCCC
Q 020523 252 QSF-VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296 (325)
Q Consensus 252 ~~i-~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~ 296 (325)
-|+ ++++.. |++|+.++..+.+++|.++++++|+++..++++.
T Consensus 29 hG~LLal~~~--~~~I~~~S~N~~~~lg~~~~~llG~~l~~ll~~~ 72 (520)
T 3zq5_A 29 HGLVVVLQEP--DLTISQISANCTGILGRSPEDLLGRTLGEVFDSF 72 (520)
T ss_dssp TSEEEEEETT--TTEEEEEETTHHHHHSCCHHHHTTSBHHHHCEES
T ss_pred CeEEEEEECC--CCEEEEEcccHHHHhCcChHHHcCCCHHHHcCHH
Confidence 344 445553 6899999999999999999999999998888654
No 132
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=68.58 E-value=34 Score=28.32 Aligned_cols=51 Identities=20% Similarity=0.261 Sum_probs=38.1
Q ss_pred EEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHh
Q 020523 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88 (325)
Q Consensus 31 i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~ 88 (325)
++++|.+ +.++.++.....++|.++++++|++...++++. ....+...+..
T Consensus 32 Ll~~~~~---~~I~~~S~N~~~~lg~~~~~~lG~~l~~ll~~~----~~~~l~~~l~~ 82 (327)
T 4e04_A 32 LLALAAD---MTIVAGSDNLPELTGLAIGALIGRSAADVFDSE----THNRLTIALAE 82 (327)
T ss_dssp EEEECTT---CBEEEEETTHHHHHSCCHHHHTTCBHHHHBCHH----HHHHHHHHHHS
T ss_pred EEEEcCC---CeEEEEcccHHHHhCCChHhhcCCCHHHHcCHH----HHHHHHHHhhc
Confidence 3556655 899999999999999999999999988776532 23344454444
No 133
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=58.64 E-value=56 Score=24.57 Aligned_cols=97 Identities=8% Similarity=0.068 Sum_probs=55.4
Q ss_pred HHHHHHHHHhhCCC--eEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCCCeE
Q 020523 16 YTLWVHEALDELPD--SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIE 93 (325)
Q Consensus 16 ~~~~~~~~~~~~~~--~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 93 (325)
....+..+....+. .+++.|.+ |.++..++. ...+. ...+. ..+..++..+...-
T Consensus 56 ~~~~L~~~~~~~~~~~~i~i~d~~---G~~~~~~~~----------~~~~~------~~~~r----~~f~~a~~~~~~~i 112 (217)
T 4dah_A 56 MQSILEKTFDSEPRFSGLYFLNAK---GDVTASTTE----------LKTKV------NLADR----SFFIKAKETKKTVI 112 (217)
T ss_dssp HHHHHHHHHTTCTTEEEEEEEETT---CBEEEESSC----------CSSCC------BCTTS----HHHHHHHHHCSCEE
T ss_pred HHHHHHHHHhcCCcccEEEEECCC---CcEEEecCC----------CCCCC------Ccchh----HHHHHHHhcCCcEE
Confidence 33455666665554 67889999 988766430 00011 11111 23444555555433
Q ss_pred EEEEEEecCCCEEEEEEEEEEeecCCCCceEEEEEEEeccCcchh
Q 020523 94 VNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (325)
Q Consensus 94 ~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~ 138 (325)
.+...-...|. ++.....|+.+ .+|.+.|+++...++.....
T Consensus 113 s~~~~~~~~g~--~~i~ia~pi~~-~~g~~~Gvl~~~i~l~~l~~ 154 (217)
T 4dah_A 113 SDSYSSRITGQ--PIFTICVPVLD-SKRNVTDYLVAAIQIDYLKN 154 (217)
T ss_dssp CCCEECTTTCS--EEEEEEEEEEC-TTSCEEEEEEEEEEHHHHHH
T ss_pred eceEEcCCCCC--EEEEEEEEEEC-CCCCEEEEEEEEEcHHHHHH
Confidence 33222233455 45566789987 78999999988877765543
No 134
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=48.42 E-value=13 Score=30.92 Aligned_cols=39 Identities=10% Similarity=0.018 Sum_probs=32.8
Q ss_pred EEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCC
Q 020523 32 TITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGP 72 (325)
Q Consensus 32 ~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~ 72 (325)
++++.+ ++.++.++.....++|.++++++|+++..++++
T Consensus 56 L~l~~~--~~~I~~~S~N~~~~lg~~~~~llG~~l~~ll~~ 94 (343)
T 3s7o_A 56 LTADGH--SGEVLQMSLNAATFLGQEPTVLRGQTLAALLPE 94 (343)
T ss_dssp EEEETT--TCBEEEEETTHHHHHSSCHHHHTTCBHHHHSTT
T ss_pred EEEECC--CCEEEEEcccHHHHhCcChHHHcCCCHHHHHhH
Confidence 455542 389999999999999999999999998887765
No 135
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=44.53 E-value=11 Score=29.88 Aligned_cols=32 Identities=13% Similarity=0.139 Sum_probs=27.7
Q ss_pred CCceEEecCCCCCCCeEEEehhhHHhhCCCcccc
Q 020523 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEV 284 (325)
Q Consensus 251 ~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~ 284 (325)
+..++++|.. ++.+.+++.++..++||+++++
T Consensus 43 ~~~~~l~D~~--~~~~~~~s~~~~~llG~~~~~~ 74 (258)
T 3clo_A 43 GGCAVISDLS--NRKSYVTVHPWANFLGLTPEEA 74 (258)
T ss_dssp SSEEEEEETT--TTEEEEEECTTCGGGCCCHHHH
T ss_pred CCeEEEEEcC--CCeEEEEeCCHHHHhCCCcccc
Confidence 4567888976 5899999999999999999877
No 136
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=42.05 E-value=11 Score=33.27 Aligned_cols=40 Identities=18% Similarity=0.207 Sum_probs=32.1
Q ss_pred CceEE-ecCCCCCCCeEEEehhhHHhhCCCccccccccccc-ccCCC
Q 020523 252 QSFVL-IDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRF-LNGVD 296 (325)
Q Consensus 252 ~~i~~-~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~-l~~~~ 296 (325)
-|+++ ++. |++|+.++..+.+++|.++ ++|+++.. ++++.
T Consensus 26 hG~Ll~l~~---~~~I~~~S~N~~~~lg~~~--~lG~~l~~~ll~~~ 67 (505)
T 3nhq_A 26 HGALVTLRA---DGMVLAASENIQALLGFVA--SPGSYLTQEQVGPE 67 (505)
T ss_dssp TEEEEEECT---TSBEEEEETTHHHHHSSCC--CTTCBCCHHHHHHH
T ss_pred CeEEEEEcC---CCeEEEEcccHHHHhCccc--ccCCchhhhhCCHH
Confidence 45544 444 5899999999999999988 99999998 77543
No 137
>3pxp_A Helix-turn-helix domain protein; DNA-binding, basic helix-loop-helix motif, BHLH motif, lambd repressor-like DNA-binding fold; HET: MSE MYR; 2.30A {Chloroflexus aurantiacus}
Probab=38.45 E-value=36 Score=27.67 Aligned_cols=37 Identities=8% Similarity=0.049 Sum_probs=31.8
Q ss_pred chhhhHhhhhccCCceEEecCCCCCCCeEEEehhhHHhhC
Q 020523 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG 278 (325)
Q Consensus 239 ~~~~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~a~~~~~G 278 (325)
+...++.+++..+.+.+++|.. +.|+.+|+++..+||
T Consensus 97 v~p~l~~lLd~l~~PA~V~d~~---~dvla~N~~a~~L~~ 133 (292)
T 3pxp_A 97 SLQYLIDMIRNMNVPAFVTDQY---VNIIAANMITIRFFN 133 (292)
T ss_dssp HHHHHHHHHHTCSSCEEEEETT---CBEEEEEHHHHHHHT
T ss_pred cCHHHHHHHHhcCCCeEEECCC---CCHhhcCHHHHHHhC
Confidence 4456888898888899999986 699999999999996
No 138
>2hje_A Autoinducer 2 sensor kinase/phosphatase LUXQ; PER/ARNT/simple-minded (PAS) fold, autoinducer-2 (AI-2), quorum sensing, histidine sensor kinase; 1.70A {Vibrio harveyi} SCOP: d.110.6.3 PDB: 2hj9_C 1zhh_B*
Probab=34.54 E-value=1.6e+02 Score=22.67 Aligned_cols=88 Identities=11% Similarity=0.046 Sum_probs=57.1
Q ss_pred HhhCCCeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCCCeEEEEEEEecCC
Q 020523 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDG 103 (325)
Q Consensus 24 ~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg 103 (325)
...+|+--++.+.+ + +.|..+-..++|++...+ ..+.+.+..+..|+... ....+
T Consensus 58 p~~~pDfRFI~~~~---~--~~WdDgNa~FyGi~~~~L------------------~~L~~~v~~~~~Wh~~~--~~s~~ 112 (221)
T 2hje_A 58 PSHTPEFRFLTDHK---G--IIWDDGNAHFYGVNDLIL------------------DSLANRVSFSNNWYYIN--VMTSI 112 (221)
T ss_dssp GGGCCSEEEEECSS---S--EEEECSGGGGGTCCHHHH------------------HHHHHHCCSSSSCEEEE--EEETT
T ss_pred cCCCCcEEEEEeCC---c--eEEECCCccccccCHHHH------------------HHHHhhhcccCceEEEE--eccCC
Confidence 45778877888776 4 345555567777765443 23333344445566543 34566
Q ss_pred CEEEEEEEEEEeecCCCCceEEEEEEEeccCcc
Q 020523 104 TPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (325)
Q Consensus 104 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~ 136 (325)
..+++.++-.|+.+...|++.|++.+..-....
T Consensus 113 g~~~lLvRR~pIi~~~tGeVlG~Ly~gvVLnnN 145 (221)
T 2hje_A 113 GSRHMLVRRVPILDPSTGEVLGFSFNAVVLDNN 145 (221)
T ss_dssp EEEEEEEEEEEEEETTTTEEEEEEEEEEECTTC
T ss_pred CceEEEEEccceecCCCCcEEEEEEEEEEecCc
Confidence 777888999999876789999987766555444
No 139
>3c38_A Autoinducer 2 sensor kinase/phosphatase LUXQ; 2-component system, quorum sensing, histidine kinase, hydrolase, inner membrane, membrane; 2.30A {Vibrio cholerae} PDB: 3c30_A
Probab=33.40 E-value=1.8e+02 Score=23.10 Aligned_cols=89 Identities=13% Similarity=0.225 Sum_probs=56.1
Q ss_pred HhhCCCeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCCCeEEEEEEEecCC
Q 020523 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDG 103 (325)
Q Consensus 24 ~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg 103 (325)
...+|+--++.+.+ + +.|-.+-..++|++...+ ..+.+.+..+..|+... ....+
T Consensus 77 p~~~pDfRFI~~~~---~--~~WdDgNa~FyGi~~~~L------------------~~L~~~v~~~~~Wh~~~--~~s~~ 131 (270)
T 3c38_A 77 LSNAPDLRFISSHD---N--ILWDDGNASFYGIAQQEL------------------NKLIRRVAISGNWHLVQ--TPSEG 131 (270)
T ss_dssp GGGCCSEEEEEETT---E--EEEECSCGGGGTCCHHHH------------------HHHHHHSCSSSSCEEEE--ECCSS
T ss_pred ccCCCcEEEEEeCC---c--eEEECCCCceeCCCHHHH------------------HHHHhhcccCCceEEEE--eccCC
Confidence 35677777777766 4 344444456677665432 33334444455566542 34566
Q ss_pred CEEEEEEEEEEeecCCCCceEEEEEEEeccCcch
Q 020523 104 TPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137 (325)
Q Consensus 104 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k 137 (325)
..+++.++-.|+.+...|++.|++.+.......-
T Consensus 132 g~~~lLvRr~pIid~~TGEVlG~Ly~gvVLnnNf 165 (270)
T 3c38_A 132 KSVHILMRRSSLIEAGTGQVVGYLYVGIVLNDNF 165 (270)
T ss_dssp SCEEEEEEEEEECCCC-CCCCEEEEEEEECTTCH
T ss_pred CceEEEEEccceecCCCCcEEEEEEEEEEecCcH
Confidence 7778889999998767899999987777665543
No 140
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=32.43 E-value=1.2e+02 Score=20.68 Aligned_cols=26 Identities=19% Similarity=0.120 Sum_probs=19.9
Q ss_pred EEEEEeecCCCCceEEEEEEEeccCcc
Q 020523 110 FKMSLVFGKEDGRATHFVAVQVPIVSR 136 (325)
Q Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~DITe~ 136 (325)
....|+.+ .+|+++|++.+..++...
T Consensus 103 ~~~~PV~~-~~g~viGvv~vg~~l~~v 128 (131)
T 1p0z_A 103 RGKSPIQD-ATGKVIGIVSVGYTIEQL 128 (131)
T ss_dssp EEEEEEEC-TTCCEEEEEEEEEEGGGC
T ss_pred EEEEeEEC-CCCCEEEEEEEEEEhHHh
Confidence 34559987 689999999988876543
No 141
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=29.78 E-value=22 Score=31.66 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=32.4
Q ss_pred EEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCC
Q 020523 32 TITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPR 73 (325)
Q Consensus 32 ~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~ 73 (325)
++++.. ++.++.++.....++|.++++++|+++..++++.
T Consensus 33 Lal~~~--~~~I~~~S~N~~~~lg~~~~~llG~~l~~ll~~~ 72 (520)
T 3zq5_A 33 VVLQEP--DLTISQISANCTGILGRSPEDLLGRTLGEVFDSF 72 (520)
T ss_dssp EEEETT--TTEEEEEETTHHHHHSCCHHHHTTSBHHHHCEES
T ss_pred EEEECC--CCEEEEEcccHHHHhCcChHHHcCCCHHHHcCHH
Confidence 455542 3899999999999999999999999977776543
No 142
>3e4o_A C4-dicarboxylate transport sensor protein DCTB; PAS domain, N-TERM helical dimerization domain, transferase; 2.30A {Sinorhizobium meliloti} PDB: 3e4p_A 3e4q_A 2zbb_A
Probab=25.47 E-value=2.7e+02 Score=22.50 Aligned_cols=95 Identities=14% Similarity=0.019 Sum_probs=50.4
Q ss_pred HHHHHHhhC-CCeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCCCeEEEEE
Q 020523 19 WVHEALDEL-PDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLL 97 (325)
Q Consensus 19 ~~~~~~~~~-~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 97 (325)
.+..+.... -..+++.|.+ |.++..+... .+...+|... .+ ...+.+++.++.... +.
T Consensus 103 ~L~~~~~~~~~~~i~v~d~~---G~viass~~~------~p~~~~g~d~------~~----R~yf~~Al~g~~~~~--~~ 161 (305)
T 3e4o_A 103 KLEALATSAEAAVIYLIDRS---GVAVAASNWQ------EPTSFVGNDY------AF----RDYFRLAVRDGMAEH--FA 161 (305)
T ss_dssp HHHHHHHHSSCSEEEEEETT---SBEEEETTTT------STTCCTTCBC------TT----SHHHHHHHHHSEEEE--EE
T ss_pred HHHHHHhccCccEEEEECCC---CCEEEeCCCc------CcccccCCCc------cc----cHHHHHHHhcCCcEE--EE
Confidence 344443333 3478899999 9988655310 0111122211 11 234455555543221 12
Q ss_pred EEecCCCEEEEEEEEEEeecCCCCceEEEEEEEeccCcchh
Q 020523 98 NYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (325)
Q Consensus 98 ~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~k~ 138 (325)
.-...|. +......|+++ +|.+.|++++..|+....+
T Consensus 162 ~~~~tg~--~~i~~a~PV~~--~G~viGVv~v~i~l~~l~~ 198 (305)
T 3e4o_A 162 MGTVSKR--PGLYISRRVDG--PGGPLGVIVAKLEFDGVEA 198 (305)
T ss_dssp ECTTTCC--EEEEEEEEEEE--TTEEEEEEEEEECCHHHHH
T ss_pred EecCCCC--EEEEEEEEEcc--CCeEEEEEEEEEcHHHHHH
Confidence 2222344 34456788886 6999999998888775443
No 143
>3pxp_A Helix-turn-helix domain protein; DNA-binding, basic helix-loop-helix motif, BHLH motif, lambd repressor-like DNA-binding fold; HET: MSE MYR; 2.30A {Chloroflexus aurantiacus}
Probab=25.21 E-value=1.1e+02 Score=24.78 Aligned_cols=37 Identities=11% Similarity=0.082 Sum_probs=32.0
Q ss_pred HHHHHHHHHhhCCCeEEEEcCCCCCCCEEEecHHHHHhcC
Q 020523 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSG 55 (325)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G 55 (325)
....+..+++..+...+++|.. ..++.+|+++..+++
T Consensus 97 v~p~l~~lLd~l~~PA~V~d~~---~dvla~N~~a~~L~~ 133 (292)
T 3pxp_A 97 SLQYLIDMIRNMNVPAFVTDQY---VNIIAANMITIRFFN 133 (292)
T ss_dssp HHHHHHHHHHTCSSCEEEEETT---CBEEEEEHHHHHHHT
T ss_pred cCHHHHHHHHhcCCCeEEECCC---CCHhhcCHHHHHHhC
Confidence 3446778888888899999999 999999999999985
No 144
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=20.76 E-value=2.3e+02 Score=25.01 Aligned_cols=35 Identities=17% Similarity=0.116 Sum_probs=29.1
Q ss_pred EEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCc-ccC
Q 020523 32 TITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM-FQG 71 (325)
Q Consensus 32 ~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~-l~~ 71 (325)
++++.+ +.++.++.....++|.++ ++|+++.. +++
T Consensus 30 l~l~~~---~~I~~~S~N~~~~lg~~~--~lG~~l~~~ll~ 65 (505)
T 3nhq_A 30 VTLRAD---GMVLAASENIQALLGFVA--SPGSYLTQEQVG 65 (505)
T ss_dssp EEECTT---SBEEEEETTHHHHHSSCC--CTTCBCCHHHHH
T ss_pred EEEcCC---CeEEEEcccHHHHhCccc--ccCCchhhhhCC
Confidence 456666 899999999999999987 88998776 654
Done!