Query 020523
Match_columns 325
No_of_seqs 238 out of 1820
Neff 10.9
Searched_HMMs 13730
Date Mon Mar 25 04:15:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020523.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020523hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1n9la_ d.110.3.6 (A:) Putativ 99.8 8.7E-19 6.3E-23 122.6 15.7 108 27-135 2-109 (109)
2 d1bywa_ d.110.3.6 (A:) Erg pot 99.8 2.3E-17 1.7E-21 115.5 14.9 106 30-136 3-110 (110)
3 d1jnua_ d.110.3.6 (A:) Photore 99.7 3.4E-17 2.5E-21 113.4 14.9 103 30-133 2-104 (104)
4 d1n9la_ d.110.3.6 (A:) Putativ 99.7 6.7E-18 4.9E-22 118.0 7.4 75 250-324 2-86 (109)
5 d1ew0a_ d.110.3.2 (A:) Histidi 99.7 1.7E-16 1.2E-20 114.6 14.6 123 5-134 4-130 (130)
6 d1p97a_ d.110.3.7 (A:) Hypoxia 99.7 1.7E-16 1.2E-20 111.8 8.6 105 31-138 9-113 (114)
7 d1jnua_ d.110.3.6 (A:) Photore 99.6 7.2E-16 5.2E-20 106.6 7.2 73 253-325 2-84 (104)
8 d1v9ya_ d.110.3.2 (A:) Direct 99.6 2.5E-15 1.8E-19 105.4 7.1 80 243-325 3-96 (113)
9 d1ew0a_ d.110.3.2 (A:) Histidi 99.5 3E-15 2.2E-19 107.8 6.4 82 240-324 15-110 (130)
10 d1v9ya_ d.110.3.2 (A:) Direct 99.5 6.2E-14 4.5E-18 98.0 12.5 108 19-132 2-113 (113)
11 d1xj3a1 d.110.3.2 (A:154-259) 99.5 5.6E-14 4.1E-18 97.0 11.9 101 29-135 1-105 (106)
12 d1bywa_ d.110.3.6 (A:) Erg pot 99.5 3.9E-14 2.8E-18 98.7 6.9 72 253-324 3-86 (110)
13 d1nwza_ d.110.3.1 (A:) Photoac 99.5 3.1E-13 2.2E-17 96.2 11.7 103 12-117 11-114 (125)
14 d1mzua_ d.110.3.1 (A:) PYP dom 99.5 1.7E-14 1.2E-18 100.2 4.4 79 243-324 5-94 (110)
15 d1ll8a_ d.110.3.5 (A:) N-termi 99.4 6.4E-14 4.7E-18 98.2 5.3 76 248-325 5-94 (114)
16 d1xj3a1 d.110.3.2 (A:154-259) 99.4 9.6E-14 7E-18 95.8 5.4 71 252-325 1-85 (106)
17 d1mzua_ d.110.3.1 (A:) PYP dom 99.4 1.8E-12 1.3E-16 89.8 11.6 95 20-117 5-100 (110)
18 d1nwza_ d.110.3.1 (A:) Photoac 99.4 2.2E-13 1.6E-17 97.0 4.6 79 243-324 19-108 (125)
19 d1ll8a_ d.110.3.5 (A:) N-termi 99.3 2.1E-12 1.5E-16 90.2 5.5 104 25-134 5-113 (114)
20 d1p97a_ d.110.3.7 (A:) Hypoxia 99.3 1.6E-12 1.2E-16 90.9 4.2 73 251-324 4-86 (114)
21 d1oj5a_ d.110.3.8 (A:) PAS dom 99.1 1.5E-10 1.1E-14 79.5 6.8 96 31-129 5-103 (109)
22 d1oj5a_ d.110.3.8 (A:) PAS dom 99.0 4.5E-11 3.3E-15 82.2 2.0 62 263-324 11-85 (109)
23 d2oola2 d.110.3.9 (A:26-139) S 97.8 5.2E-06 3.8E-10 56.7 3.5 51 254-306 20-70 (114)
24 d2oola2 d.110.3.9 (A:26-139) S 97.0 0.00048 3.5E-08 46.5 5.1 44 31-77 20-64 (114)
25 d2veaa3 d.110.3.9 (A:4-130) Ph 96.5 0.00098 7.1E-08 45.7 3.9 50 252-303 26-76 (127)
26 d2o9ca2 d.110.3.9 (A:4-130) Ba 96.5 0.0012 8.7E-08 45.3 3.9 42 252-295 35-77 (127)
27 d2veaa3 d.110.3.9 (A:4-130) Ph 93.3 0.052 3.8E-06 36.7 4.6 44 32-77 30-73 (127)
28 d2o9ca2 d.110.3.9 (A:4-130) Ba 92.1 0.31 2.2E-05 32.7 7.3 39 32-72 39-77 (127)
29 d3c2wa3 d.110.3.9 (A:5-117) Ba 81.6 0.39 2.9E-05 31.3 2.4 39 253-295 23-62 (113)
30 d3c2wa3 d.110.3.9 (A:5-117) Ba 63.5 13 0.00094 23.6 6.5 71 31-110 25-95 (113)
31 d1uxja1 c.2.1.5 (A:2-143) Mala 35.4 7.3 0.00053 26.0 1.6 38 246-287 105-142 (142)
32 d1p0za_ d.110.6.1 (A:) Sensor 23.0 55 0.004 20.8 4.4 90 17-136 38-128 (131)
33 d1smpi_ b.61.2.1 (I:) Metallop 21.2 29 0.0021 21.3 2.3 24 250-275 61-84 (100)
No 1
>d1n9la_ d.110.3.6 (A:) Putative blue light receptor, phot-lov1 domain {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}
Probab=99.81 E-value=8.7e-19 Score=122.64 Aligned_cols=108 Identities=41% Similarity=0.805 Sum_probs=97.6
Q ss_pred CCCeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCCCeEEEEEEEecCCCEE
Q 020523 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPF 106 (325)
Q Consensus 27 ~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~ 106 (325)
+.+++++.|+..++|+++++|++|++++||++++++|+++..+.++.........+...+..+..+..++..+++||..+
T Consensus 2 i~~~~vi~Da~~pdg~Ii~vN~a~~~~~Gy~~~El~G~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~kdG~~~ 81 (109)
T d1n9la_ 2 LRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQKIRDAIKKGEACSVRLLNYRKDGTPF 81 (109)
T ss_dssp CSCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEE
T ss_pred ccceEEEEeCCCCCCeEEEEcHHHHHHHCcCHHHHcCCcceeeecccCCHHHhhhhhhHhhcCCceeeeEEEEecCCeEE
Confidence 46789999953333999999999999999999999999988888887777778888899999999999999999999999
Q ss_pred EEEEEEEEeecCCCCceEEEEEEEeccCc
Q 020523 107 WMLFKMSLVFGKEDGRATHFVAVQVPIVS 135 (325)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~~~~~~~DITe 135 (325)
|+.+++.|+++ ++|.+.+++++.+|||.
T Consensus 82 w~~~~~~pi~d-~~G~v~~~v~~~~DITa 109 (109)
T d1n9la_ 82 WNLLTVTPIKT-PDGRVSKFVGVQVDVTS 109 (109)
T ss_dssp EEEEEEEEEEC-TTSCEEEEEEEEEECCC
T ss_pred EEEEEEEEEEC-CCCCEEEEEEEEEECCC
Confidence 99999999999 89999999999999994
No 2
>d1bywa_ d.110.3.6 (A:) Erg potassium channel, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.75 E-value=2.3e-17 Score=115.51 Aligned_cols=106 Identities=27% Similarity=0.498 Sum_probs=92.4
Q ss_pred eEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcc--cCCCCChHHHHHHHHHHHhCCCeEEEEEEEecCCCEEE
Q 020523 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMF--QGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFW 107 (325)
Q Consensus 30 ~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~~ 107 (325)
.+++.|.+..++.|+|+|++|++++||+.++++|+++... .+++........+...+..+..+..++...+++|..+|
T Consensus 3 ~f~i~~~~~~d~~I~~~N~a~~~l~G~~~~eiiG~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~g~~~w 82 (110)
T d1bywa_ 3 KFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALLGAEERKVEIAFYRKDGSCFL 82 (110)
T ss_dssp EEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEEE
T ss_pred eEEEEcCCCCCCEEEEEcHHHHHHhCCCHHHhcccCcccccceeeheecccccccchhhcccccccceeeeeecccceee
Confidence 3567786544588999999999999999999999986543 35666667778888888899999999999999999999
Q ss_pred EEEEEEEeecCCCCceEEEEEEEeccCcc
Q 020523 108 MLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (325)
Q Consensus 108 ~~~~~~~~~~~~~g~~~~~~~~~~DITe~ 136 (325)
+.+++.|+++ ++|.+.+++++++|||+|
T Consensus 83 ~~~~~~pi~d-~~G~v~~~i~~~~DITer 110 (110)
T d1bywa_ 83 CLVDVVPVKN-EDGAVIMFILNFEVVMEK 110 (110)
T ss_dssp EEEEEEEEEC-TTCCEEEEEEEEEEEEEC
T ss_pred eeeeEEEEEC-CCCCEEEEEEEEEECCCC
Confidence 9999999999 999999999999999986
No 3
>d1jnua_ d.110.3.6 (A:) Photoreceptor phy3 flavin-binding domain, lov2 {Maidenhair fern (Adiantum capillus-veneris) [TaxId: 13818]}
Probab=99.74 E-value=3.4e-17 Score=113.42 Aligned_cols=103 Identities=41% Similarity=0.824 Sum_probs=94.7
Q ss_pred eEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEE
Q 020523 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWML 109 (325)
Q Consensus 30 ~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~~~~ 109 (325)
.+++.|+..++++++|+|++|++++||+.++++|+++..+.++.........+...+..+..+..++...+++|+.+|+.
T Consensus 2 ~fvi~d~~~pd~~I~y~N~a~~~~~G~s~~e~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~~~~ 81 (104)
T d1jnua_ 2 SFVITDPRLPDNPIIFASDRFLELTEYTREEVLGNNCRFLQGRGTDRKAVQLIRDAVKEQRDVTVQVLNYTKGGRAFWNL 81 (104)
T ss_dssp EEEEECTTSTTCCEEEECHHHHHHHTCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEEEE
T ss_pred eEEEEcCCCCCCEEEEEcHHHHHHHCcCHHHHCCccceeccccccchHHHhhhhhhhhcCceeEeEEEEEecccceEEEE
Confidence 46778854445999999999999999999999999998888888888888899999999999999999999999999999
Q ss_pred EEEEEeecCCCCceEEEEEEEecc
Q 020523 110 FKMSLVFGKEDGRATHFVAVQVPI 133 (325)
Q Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~DI 133 (325)
+++.|+++ ++|++.+++++.+||
T Consensus 82 ~~~~pi~d-~~G~v~~~i~i~~DI 104 (104)
T d1jnua_ 82 FHLQVMRD-ENGDVQYFIGVQQEM 104 (104)
T ss_dssp EEEEEECT-TTSSCCEEEEEEEEC
T ss_pred EEEEEEEC-CCCCEEEEEEEEEcC
Confidence 99999999 999999999999997
No 4
>d1n9la_ d.110.3.6 (A:) Putative blue light receptor, phot-lov1 domain {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}
Probab=99.71 E-value=6.7e-18 Score=118.03 Aligned_cols=75 Identities=37% Similarity=0.757 Sum_probs=67.3
Q ss_pred cCCceEEecCCCCCCCeEEEehhhHHhhCCCcccccccccccccCCCCChHHHHHHHH----------hhccccCCCcee
Q 020523 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSI----------AISPYPKKKSIY 319 (325)
Q Consensus 250 ~~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~----------e~~~~~kdG~~~ 319 (325)
+.++|+++|++.|||+|+|||++|++|+||+++|++|+++..+.+|+..+.....+.+ |++.++|||+.+
T Consensus 2 i~~~~vi~Da~~pdg~Ii~vN~a~~~~~Gy~~~El~G~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~kdG~~~ 81 (109)
T d1n9la_ 2 LRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQKIRDAIKKGEACSVRLLNYRKDGTPF 81 (109)
T ss_dssp CSCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEE
T ss_pred ccceEEEEeCCCCCCeEEEEcHHHHHHHCcCHHHHcCCcceeeecccCCHHHhhhhhhHhhcCCceeeeEEEEecCCeEE
Confidence 4689999998878999999999999999999999999999999988888877766655 788889999999
Q ss_pred eEEee
Q 020523 320 MEYVR 324 (325)
Q Consensus 320 ~~~~~ 324 (325)
|++++
T Consensus 82 w~~~~ 86 (109)
T d1n9la_ 82 WNLLT 86 (109)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99876
No 5
>d1ew0a_ d.110.3.2 (A:) Histidine kinase FixL heme domain {Rhizobium meliloti [TaxId: 382]}
Probab=99.71 E-value=1.7e-16 Score=114.59 Aligned_cols=123 Identities=17% Similarity=0.238 Sum_probs=99.8
Q ss_pred hhhHHhhhhhhHHHHHHHHHhhCCCeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHH
Q 020523 5 LGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIRE 84 (325)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~ 84 (325)
+...++.+. ..+++++.++++++++++++|.+ |.++++|+++++++||++++++|+++..++++.........+..
T Consensus 4 l~~~e~~l~-~~e~~~~~i~~~~~~~i~~~d~~---g~i~~~N~~~~~l~Gy~~~el~g~~~~~~~~~~~~~~~~~~~~~ 79 (130)
T d1ew0a_ 4 MLETEDVVR-ARDAHLRSILDTVPDATVVSATD---GTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPYRHEHDGYLQR 79 (130)
T ss_dssp HHHHHHHHH-HHTSCHHHHHTTCSSEEEEEETT---SBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTTGGGHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHcCCCeEEEEeCC---ccEEEEHHHHHHhhcCCHHHhcCCccccccccchhHHHHHHHHH
Confidence 344455555 56668999999999999999999 99999999999999999999999998888777766665555665
Q ss_pred HHHhCCC----eEEEEEEEecCCCEEEEEEEEEEeecCCCCceEEEEEEEeccC
Q 020523 85 AIREERP----IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (325)
Q Consensus 85 ~~~~~~~----~~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 134 (325)
.+..+.. ...++...++||..+|+.+++.|+.. . +. ..++++++|||
T Consensus 80 ~~~~~~~~~~~~~~e~~~~~~dG~~~~v~~~~~~i~~-~-~~-~~~~~i~rDIT 130 (130)
T d1ew0a_ 80 YMATGEKRIIGIDRVVSGQRKDGSTFPMKLAVGEMRS-G-GE-RFFTGFIRDLT 130 (130)
T ss_dssp HHHHCCCSSTTSCEEEEEECTTSCEEEEEEEEEEEEE-T-TE-EEEEEEEEECC
T ss_pred HHHhCCCccccceeeEEEEcCCCCEEEEEEEEEEEEE-C-Ce-EEEEEEEEECC
Confidence 5654432 46678888999999999999999987 3 33 34788999998
No 6
>d1p97a_ d.110.3.7 (A:) Hypoxia-inducible factor Hif2a, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.65 E-value=1.7e-16 Score=111.78 Aligned_cols=105 Identities=9% Similarity=0.194 Sum_probs=92.5
Q ss_pred EEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEE
Q 020523 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLF 110 (325)
Q Consensus 31 i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~~~~~ 110 (325)
+...+.+ |.++++|+++++++||+.++++|+++..+++|++...+...+...+..+..+..+++..++||..+|+.+
T Consensus 9 i~r~~~d---G~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~ed~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~wv~~ 85 (114)
T d1p97a_ 9 LSRHSMD---MKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYVWLET 85 (114)
T ss_dssp EEEECTT---TSCSEECTTHHHHTSSCHHHHTTSCHHHHSCSSSHHHHHHHHHHHTTTSEEEEEEEEEECTTSCEEEEEE
T ss_pred EEEECCC---CcEEEECHHHHHHcCCCccccccccccccccccccccceeeeeecccccceeecceeeeeecCcceEEEE
Confidence 3446899 9999999999999999999999999888888888777777777777777777888999999999999999
Q ss_pred EEEEeecCCCCceEEEEEEEeccCcchh
Q 020523 111 KMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (325)
Q Consensus 111 ~~~~~~~~~~g~~~~~~~~~~DITe~k~ 138 (325)
+.+|+.++.+|.+.+++++.+|||++|+
T Consensus 86 ~~~~~~~~~~~~~~~ii~~~~dite~k~ 113 (114)
T d1p97a_ 86 QGTVIYNPRNLQPQCIMCVNYVLSEIEK 113 (114)
T ss_dssp EEEEEECTTTCSEEEEEEEEEEEEEEEC
T ss_pred EEEEEEeCCCCCEEEEEEEEEECChhhc
Confidence 9999998236899999999999999986
No 7
>d1jnua_ d.110.3.6 (A:) Photoreceptor phy3 flavin-binding domain, lov2 {Maidenhair fern (Adiantum capillus-veneris) [TaxId: 13818]}
Probab=99.60 E-value=7.2e-16 Score=106.57 Aligned_cols=73 Identities=42% Similarity=0.788 Sum_probs=66.0
Q ss_pred ceEEecCCCCCCCeEEEehhhHHhhCCCcccccccccccccCCCCChHHHHHHHH----------hhccccCCCceeeEE
Q 020523 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSI----------AISPYPKKKSIYMEY 322 (325)
Q Consensus 253 ~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~----------e~~~~~kdG~~~~~~ 322 (325)
.++++|+..+||+|+|+|++|++++||+++|++|+++.++.+++..+...+.+.. |++++++||+.+|++
T Consensus 2 ~fvi~d~~~pd~~I~y~N~a~~~~~G~s~~e~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~~~~ 81 (104)
T d1jnua_ 2 SFVITDPRLPDNPIIFASDRFLELTEYTREEVLGNNCRFLQGRGTDRKAVQLIRDAVKEQRDVTVQVLNYTKGGRAFWNL 81 (104)
T ss_dssp EEEEECTTSTTCCEEEECHHHHHHHTCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEEEE
T ss_pred eEEEEcCCCCCCEEEEEcHHHHHHHCcCHHHHCCccceeccccccchHHHhhhhhhhhcCceeEeEEEEEecccceEEEE
Confidence 5789998888999999999999999999999999999999999988888777766 888899999999998
Q ss_pred eeC
Q 020523 323 VRV 325 (325)
Q Consensus 323 ~~~ 325 (325)
+++
T Consensus 82 ~~~ 84 (104)
T d1jnua_ 82 FHL 84 (104)
T ss_dssp EEE
T ss_pred EEE
Confidence 763
No 8
>d1v9ya_ d.110.3.2 (A:) Direct oxygen sensor protein, DOS {Escherichia coli [TaxId: 562]}
Probab=99.56 E-value=2.5e-15 Score=105.43 Aligned_cols=80 Identities=23% Similarity=0.232 Sum_probs=65.9
Q ss_pred hHhhhhccCCceEEecCCCCCCCeEEEehhhHHhhCCCcccccccccccccCCCCChHHHHHHHH--------------h
Q 020523 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSI--------------A 308 (325)
Q Consensus 243 l~~~~~~~~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~--------------e 308 (325)
|..+++++++||+++|. ||+|+++|+++++|+||+++|++|+++..+.++.........+.. |
T Consensus 3 ~~~~~e~~~d~i~~~d~---~g~i~~~N~~~~~l~Gy~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 79 (113)
T d1v9ya_ 3 FFPALEQNMMGAVLINE---NDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVEGMSRE 79 (113)
T ss_dssp HHHHHHTCSSEEEEECT---TSBEEEECHHHHHHHSCCGGGTTTSBGGGGSCGGGTTTHHHHHHHHHC----------CE
T ss_pred HHHHHHcCcCcEEEEeC---CCCEEEEchhHhhhhccchhhhcCcceeccccccccccccccccccccccccccccccee
Confidence 66789999999999998 479999999999999999999999999888765554443333222 6
Q ss_pred hccccCCCceeeEEeeC
Q 020523 309 ISPYPKKKSIYMEYVRV 325 (325)
Q Consensus 309 ~~~~~kdG~~~~~~~~~ 325 (325)
...++|||+.+|+++++
T Consensus 80 ~~~~~~dG~~~~v~~~~ 96 (113)
T d1v9ya_ 80 LQLEKKDGSKIWTRFAL 96 (113)
T ss_dssp EEEECTTSCEEEEEEEE
T ss_pred eeeccccceeEEEEEEE
Confidence 67788999999999863
No 9
>d1ew0a_ d.110.3.2 (A:) Histidine kinase FixL heme domain {Rhizobium meliloti [TaxId: 382]}
Probab=99.54 E-value=3e-15 Score=107.84 Aligned_cols=82 Identities=22% Similarity=0.184 Sum_probs=68.8
Q ss_pred hhhhHhhhhccCCceEEecCCCCCCCeEEEehhhHHhhCCCcccccccccccccCCCCChHHHHHHHH------------
Q 020523 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSI------------ 307 (325)
Q Consensus 240 ~~~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~------------ 307 (325)
++.|+.++++++++|+++|. ||+|+++|+++++|+||+++|++|+++..+.++.........+.+
T Consensus 15 e~~~~~i~~~~~~~i~~~d~---~g~i~~~N~~~~~l~Gy~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (130)
T d1ew0a_ 15 DAHLRSILDTVPDATVVSAT---DGTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPYRHEHDGYLQRYMATGEKRIIGI 91 (130)
T ss_dssp TSCHHHHHTTCSSEEEEEET---TSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTTGGGHHHHHHHHHHHCCCSSTTS
T ss_pred HHHHHHHHHcCCCeEEEEeC---CccEEEEHHHHHHhhcCCHHHhcCCccccccccchhHHHHHHHHHHHHhCCCccccc
Confidence 34578899999999999998 589999999999999999999999999988877766554433333
Q ss_pred --hhccccCCCceeeEEee
Q 020523 308 --AISPYPKKKSIYMEYVR 324 (325)
Q Consensus 308 --e~~~~~kdG~~~~~~~~ 324 (325)
++...+|||+.+|++++
T Consensus 92 ~~e~~~~~~dG~~~~v~~~ 110 (130)
T d1ew0a_ 92 DRVVSGQRKDGSTFPMKLA 110 (130)
T ss_dssp CEEEEEECTTSCEEEEEEE
T ss_pred eeeEEEEcCCCCEEEEEEE
Confidence 56678899999999876
No 10
>d1v9ya_ d.110.3.2 (A:) Direct oxygen sensor protein, DOS {Escherichia coli [TaxId: 562]}
Probab=99.54 E-value=6.2e-14 Score=98.03 Aligned_cols=108 Identities=22% Similarity=0.258 Sum_probs=81.8
Q ss_pred HHHHHHhhCCCeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHh----CCCeEE
Q 020523 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE----ERPIEV 94 (325)
Q Consensus 19 ~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~ 94 (325)
.|.+++++++++++++|.+ |+++++|+++++++||+.++++|++...+.++.............+.. ......
T Consensus 2 ~~~~~~e~~~d~i~~~d~~---g~i~~~N~~~~~l~Gy~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (113)
T d1v9ya_ 2 IFFPALEQNMMGAVLINEN---DEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVEGMSR 78 (113)
T ss_dssp CHHHHHHTCSSEEEEECTT---SBEEEECHHHHHHHSCCGGGTTTSBGGGGSCGGGTTTHHHHHHHHHC----------C
T ss_pred HHHHHHHcCcCcEEEEeCC---CCEEEEchhHhhhhccchhhhcCcceecccccccccccccccccccccccccccccce
Confidence 3678999999999999999 999999999999999999999999987776655444433333333322 223455
Q ss_pred EEEEEecCCCEEEEEEEEEEeecCCCCceEEEEEEEec
Q 020523 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVP 132 (325)
Q Consensus 95 e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~D 132 (325)
+....+++|+.+|+.+++.|+.+ .++. .++++++|
T Consensus 79 e~~~~~~dG~~~~v~~~~~~i~~-~~~~--~~~~v~rD 113 (113)
T d1v9ya_ 79 ELQLEKKDGSKIWTRFALSKVSA-EGKV--YYLALVRD 113 (113)
T ss_dssp EEEEECTTSCEEEEEEEEEEEEE-TTEE--EEEEEEEC
T ss_pred eeeeccccceeEEEEEEEEEEEE-CCeE--EEEEEEEC
Confidence 67788999999999999999997 4433 46777776
No 11
>d1xj3a1 d.110.3.2 (A:154-259) Histidine kinase FixL heme domain {Bradyrhizobium japonicum [TaxId: 375]}
Probab=99.53 E-value=5.6e-14 Score=97.02 Aligned_cols=101 Identities=19% Similarity=0.193 Sum_probs=81.2
Q ss_pred CeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCC----CeEEEEEEEecCCC
Q 020523 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER----PIEVNLLNYKKDGT 104 (325)
Q Consensus 29 ~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~e~~~~~~dg~ 104 (325)
+||+++|.+ |+++++|+++++++||+.++++|++...++++.........+...+.... ....++...++||.
T Consensus 1 dgi~~~D~~---G~I~~~N~a~~~l~Gy~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~ 77 (106)
T d1xj3a1 1 DAMIVIDGH---GIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVTGKRRDGT 77 (106)
T ss_dssp CCEEEEETT---SBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTTCEEEEEECTTSC
T ss_pred CEEEEECCC---CcEEEEcHHHHHHhhhchHhhcCCCcccccccccccchhhhhhhhhhhcccccccccceeeeeeccce
Confidence 579999999 99999999999999999999999998777776655554444444443332 24567888999999
Q ss_pred EEEEEEEEEEeecCCCCceEEEEEEEeccCc
Q 020523 105 PFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135 (325)
Q Consensus 105 ~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe 135 (325)
.+|+.+++.|+.+ +++ .+++++++||||
T Consensus 78 ~~~v~~~~~~~~~-~~~--~~~~~~~~DITE 105 (106)
T d1xj3a1 78 TFPMHLSIGEMQS-GGE--PYFTGFVRDLTE 105 (106)
T ss_dssp EEEEEEEEEEEEE-TTE--EEEEEEEEECHH
T ss_pred EEEEEEEEEEEEE-CCe--EEEEEEEEeCCC
Confidence 9999999999987 443 467899999997
No 12
>d1bywa_ d.110.3.6 (A:) Erg potassium channel, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.47 E-value=3.9e-14 Score=98.69 Aligned_cols=72 Identities=26% Similarity=0.505 Sum_probs=60.5
Q ss_pred ceEEecCCCCCCCeEEEehhhHHhhCCCcccccccccccc--cCCCCChHHHHHHHH----------hhccccCCCceee
Q 020523 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFL--NGVDTDTTVLYQVSI----------AISPYPKKKSIYM 320 (325)
Q Consensus 253 ~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l--~~~~~~~~~~~~~~~----------e~~~~~kdG~~~~ 320 (325)
.++++|++.+|++|+|+|++|++|+||+++|++|+++..+ .+|+........+.+ ++++++++|+.+|
T Consensus 3 ~f~i~~~~~~d~~I~~~N~a~~~l~G~~~~eiiG~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~g~~~w 82 (110)
T d1bywa_ 3 KFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALLGAEERKVEIAFYRKDGSCFL 82 (110)
T ss_dssp EEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEEE
T ss_pred eEEEEcCCCCCCEEEEEcHHHHHHhCCCHHHhcccCcccccceeeheecccccccchhhcccccccceeeeeecccceee
Confidence 4788898878999999999999999999999999988653 356666666666655 7888899999999
Q ss_pred EEee
Q 020523 321 EYVR 324 (325)
Q Consensus 321 ~~~~ 324 (325)
++++
T Consensus 83 ~~~~ 86 (110)
T d1bywa_ 83 CLVD 86 (110)
T ss_dssp EEEE
T ss_pred eeee
Confidence 9876
No 13
>d1nwza_ d.110.3.1 (A:) Photoactive yellow protein, PYP {Ectothiorhodospira halophila [TaxId: 1053]}
Probab=99.47 E-value=3.1e-13 Score=96.16 Aligned_cols=103 Identities=14% Similarity=0.045 Sum_probs=84.6
Q ss_pred hhhhHHHHHHHHHhhCCCeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccC-CCCChHHHHHHHHHHHhCC
Q 020523 12 FNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQG-PRTNRRTIMEIREAIREER 90 (325)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~-~~~~~~~~~~~~~~~~~~~ 90 (325)
++++....+..+++++|.|++++|.+ |+++++|+++++++||++++++|+++..++. +.....+...+.+.+..+.
T Consensus 11 ~e~~~~~~~d~~ld~~p~gi~~lD~~---G~i~~~N~a~~~l~G~~~~e~iG~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 87 (125)
T d1nwza_ 11 IENTLAKMDDGQLDGLAFGAIQLDGD---GNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCTDSPEFYGKFKEGVASGN 87 (125)
T ss_dssp HHHHTTTCCHHHHTTCSSEEEEEETT---CBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCCccEEEEeCC---CCEEEEcHHHHHhhccchHhhcCCCHHHccCchhhhhheeeeceeeeecCC
Confidence 33344556788999999999999999 9999999999999999999999999766554 4455556677888888887
Q ss_pred CeEEEEEEEecCCCEEEEEEEEEEeec
Q 020523 91 PIEVNLLNYKKDGTPFWMLFKMSLVFG 117 (325)
Q Consensus 91 ~~~~e~~~~~~dg~~~~~~~~~~~~~~ 117 (325)
....+....+++|+.+|+.+++.+..+
T Consensus 88 ~~~~~~~~~~~~G~~~~v~v~l~~~~~ 114 (125)
T d1nwza_ 88 LNTMFEYTFDYQMTPTKVKVHMKKALS 114 (125)
T ss_dssp CEEEEEEEECTTSCCEEEEEEEEECSS
T ss_pred cceEEEEEeccCCcEEEEEEEEEEecC
Confidence 766666667899999999999888864
No 14
>d1mzua_ d.110.3.1 (A:) PYP domain of sensor histidine kinase Ppr {Rhodospirillum centenum [TaxId: 34018]}
Probab=99.46 E-value=1.7e-14 Score=100.23 Aligned_cols=79 Identities=9% Similarity=-0.081 Sum_probs=60.3
Q ss_pred hHhhhhccCCceEEecCCCCCCCeEEEehhhHHhhCCCcccccccccccccCCC-CChHHHHHHHH---------h-hcc
Q 020523 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD-TDTTVLYQVSI---------A-ISP 311 (325)
Q Consensus 243 l~~~~~~~~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~-~~~~~~~~~~~---------e-~~~ 311 (325)
+..+++++|+||+++|. ||+|+++|+++++|+||+++|++|+++.+++.|. ........+.+ . -..
T Consensus 5 ~~A~ld~~p~gvi~~D~---~G~I~~~N~aa~~~~G~~~eellG~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~ 81 (110)
T d1mzua_ 5 GTAEFDALPVGAIQVDG---SGVIHRYNRTESRLSGRIPERVIGRNFFTEVAPCTNIPAFSGRFMDGVTSGTLDARFDFV 81 (110)
T ss_dssp -CTTGGGCSSEEEEEET---TCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHTSCCEEEEEEE
T ss_pred HHHHHhCCCcEEEEEcC---CCCEEEeHHHHHHHHcCCHHHHcCCCHHHhcCChhhhHHHHHHHHHHHhccccCcceEEE
Confidence 45689999999999997 5899999999999999999999999987665543 33333444433 1 112
Q ss_pred ccCCCceeeEEee
Q 020523 312 YPKKKSIYMEYVR 324 (325)
Q Consensus 312 ~~kdG~~~~~~~~ 324 (325)
.+++|+.++++++
T Consensus 82 l~~~G~~~~v~v~ 94 (110)
T d1mzua_ 82 FDFQMAPVRVQIR 94 (110)
T ss_dssp EECSSCEEEEEEE
T ss_pred EecCCceEEEEEE
Confidence 4789999998875
No 15
>d1ll8a_ d.110.3.5 (A:) N-terminal PAS domain of Pas kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.42 E-value=6.4e-14 Score=98.20 Aligned_cols=76 Identities=13% Similarity=0.142 Sum_probs=62.1
Q ss_pred hccCCceEEecCCCCCCCeEEEehhhHHhhCCCcccccccccccccCCCCChHHHHHHHH--------------hhcccc
Q 020523 248 GRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSI--------------AISPYP 313 (325)
Q Consensus 248 ~~~~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~--------------e~~~~~ 313 (325)
+.+.++|+++|.. +|+|+++|++++++|||+++|++|+++.++.++.........+.. ++...+
T Consensus 5 ~~~n~AI~~id~~--~G~I~~~N~a~~~l~Gy~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 82 (114)
T d1ll8a_ 5 PEFNKAIFTVDAK--TTEILVANDKACGLLGYSSQDLIGQKLTQFFLRSDSDVVEALSEEHMEADGHAAVVFGTVVDIIS 82 (114)
T ss_dssp TTTTCEEEEEETT--TCBEEEECTTHHHHHTCCTTTTTTSBGGGGSSCTTTHHHHHTTSSTTSSSSCSSCCCSSSEEECC
T ss_pred hhcCcEEEEEECC--CCEEEEECHHHHHhhcCCHHHHcCCCeeeecCcccHHHHHHHHHHHHhcCCCccceeeEEEEEEc
Confidence 3457899999975 589999999999999999999999999999987776554433322 456678
Q ss_pred CCCceeeEEeeC
Q 020523 314 KKKSIYMEYVRV 325 (325)
Q Consensus 314 kdG~~~~~~~~~ 325 (325)
|||+.+|+++++
T Consensus 83 ~~G~~~pvevs~ 94 (114)
T d1ll8a_ 83 RSGEKIPVSVWM 94 (114)
T ss_dssp TTCCCEEEECCE
T ss_pred cCCcEEEEEEEE
Confidence 999999998863
No 16
>d1xj3a1 d.110.3.2 (A:154-259) Histidine kinase FixL heme domain {Bradyrhizobium japonicum [TaxId: 375]}
Probab=99.41 E-value=9.6e-14 Score=95.82 Aligned_cols=71 Identities=18% Similarity=0.214 Sum_probs=58.6
Q ss_pred CceEEecCCCCCCCeEEEehhhHHhhCCCcccccccccccccCCCCChHHHHHHHH--------------hhccccCCCc
Q 020523 252 QSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSI--------------AISPYPKKKS 317 (325)
Q Consensus 252 ~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~--------------e~~~~~kdG~ 317 (325)
+||+++|.+ |+|+++|+++++|+||+++|++|+++..+.++.........+.. ++..++|||+
T Consensus 1 dgi~~~D~~---G~I~~~N~a~~~l~Gy~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~ 77 (106)
T d1xj3a1 1 DAMIVIDGH---GIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVTGKRRDGT 77 (106)
T ss_dssp CCEEEEETT---SBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTTCEEEEEECTTSC
T ss_pred CEEEEECCC---CcEEEEcHHHHHHhhhchHhhcCCCcccccccccccchhhhhhhhhhhcccccccccceeeeeeccce
Confidence 689999984 79999999999999999999999999888877655544443332 5677899999
Q ss_pred eeeEEeeC
Q 020523 318 IYMEYVRV 325 (325)
Q Consensus 318 ~~~~~~~~ 325 (325)
.+|+++++
T Consensus 78 ~~~v~~~~ 85 (106)
T d1xj3a1 78 TFPMHLSI 85 (106)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 99998763
No 17
>d1mzua_ d.110.3.1 (A:) PYP domain of sensor histidine kinase Ppr {Rhodospirillum centenum [TaxId: 34018]}
Probab=99.40 E-value=1.8e-12 Score=89.79 Aligned_cols=95 Identities=16% Similarity=0.002 Sum_probs=76.4
Q ss_pred HHHHHhhCCCeEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccC-CCCChHHHHHHHHHHHhCCCeEEEEEE
Q 020523 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQG-PRTNRRTIMEIREAIREERPIEVNLLN 98 (325)
Q Consensus 20 ~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~e~~~ 98 (325)
+..+++++|++++++|.+ |+++++|+++++++||++++++|+++..++. +.....+...+.+.+..+......-..
T Consensus 5 ~~A~ld~~p~gvi~~D~~---G~I~~~N~aa~~~~G~~~eellG~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~ 81 (110)
T d1mzua_ 5 GTAEFDALPVGAIQVDGS---GVIHRYNRTESRLSGRIPERVIGRNFFTEVAPCTNIPAFSGRFMDGVTSGTLDARFDFV 81 (110)
T ss_dssp -CTTGGGCSSEEEEEETT---CBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHTSCCEEEEEEE
T ss_pred HHHHHhCCCcEEEEEcCC---CCEEEeHHHHHHHHcCCHHHHcCCCHHHhcCChhhhHHHHHHHHHHHhccccCcceEEE
Confidence 457899999999999999 9999999999999999999999999765444 444556677788888887654433333
Q ss_pred EecCCCEEEEEEEEEEeec
Q 020523 99 YKKDGTPFWMLFKMSLVFG 117 (325)
Q Consensus 99 ~~~dg~~~~~~~~~~~~~~ 117 (325)
.+++|..+++.++..+...
T Consensus 82 l~~~G~~~~v~v~~~~~~~ 100 (110)
T d1mzua_ 82 FDFQMAPVRVQIRMQNAGV 100 (110)
T ss_dssp EECSSCEEEEEEEEEECSS
T ss_pred EecCCceEEEEEEEEEecC
Confidence 5789999999998888754
No 18
>d1nwza_ d.110.3.1 (A:) Photoactive yellow protein, PYP {Ectothiorhodospira halophila [TaxId: 1053]}
Probab=99.36 E-value=2.2e-13 Score=96.97 Aligned_cols=79 Identities=14% Similarity=-0.011 Sum_probs=61.6
Q ss_pred hHhhhhccCCceEEecCCCCCCCeEEEehhhHHhhCCCcccccccccccccCCC-CChHHHHHHHH----------hhcc
Q 020523 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD-TDTTVLYQVSI----------AISP 311 (325)
Q Consensus 243 l~~~~~~~~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~-~~~~~~~~~~~----------e~~~ 311 (325)
+..+++++|+||+++|. +|+|+++|+++++++||++++++|+++.+++.|+ ..+.....+.+ +...
T Consensus 19 ~d~~ld~~p~gi~~lD~---~G~i~~~N~a~~~l~G~~~~e~iG~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~ 95 (125)
T d1nwza_ 19 DDGQLDGLAFGAIQLDG---DGNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCTDSPEFYGKFKEGVASGNLNTMFEYT 95 (125)
T ss_dssp CHHHHTTCSSEEEEEET---TCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHHTCCEEEEEEE
T ss_pred HHHHHhCCCccEEEEeC---CCCEEEEcHHHHHhhccchHhhcCCCHHHccCchhhhhheeeeceeeeecCCcceEEEEE
Confidence 44688999999999998 4799999999999999999999999987766444 43334443333 3334
Q ss_pred ccCCCceeeEEee
Q 020523 312 YPKKKSIYMEYVR 324 (325)
Q Consensus 312 ~~kdG~~~~~~~~ 324 (325)
.+++|+.+|++++
T Consensus 96 ~~~~G~~~~v~v~ 108 (125)
T d1nwza_ 96 FDYQMTPTKVKVH 108 (125)
T ss_dssp ECTTSCCEEEEEE
T ss_pred eccCCcEEEEEEE
Confidence 6789999998875
No 19
>d1ll8a_ d.110.3.5 (A:) N-terminal PAS domain of Pas kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.27 E-value=2.1e-12 Score=90.21 Aligned_cols=104 Identities=15% Similarity=0.141 Sum_probs=81.3
Q ss_pred hhCCCeEEEEcC-CCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCC----CeEEEEEEE
Q 020523 25 DELPDSFTITDP-SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER----PIEVNLLNY 99 (325)
Q Consensus 25 ~~~~~~i~~~d~-~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~e~~~~ 99 (325)
+.+..+|+++|. + |.|+++|+++++++||++++++|+++.+++++.+.......+...+..+. .+..++...
T Consensus 5 ~~~n~AI~~id~~~---G~I~~~N~a~~~l~Gy~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 81 (114)
T d1ll8a_ 5 PEFNKAIFTVDAKT---TEILVANDKACGLLGYSSQDLIGQKLTQFFLRSDSDVVEALSEEHMEADGHAAVVFGTVVDII 81 (114)
T ss_dssp TTTTCEEEEEETTT---CBEEEECTTHHHHHTCCTTTTTTSBGGGGSSCTTTHHHHHTTSSTTSSSSCSSCCCSSSEEEC
T ss_pred hhcCcEEEEEECCC---CEEEEECHHHHHhhcCCHHHHcCCCeeeecCcccHHHHHHHHHHHHhcCCCccceeeEEEEEE
Confidence 457789999995 6 99999999999999999999999999999888776654443334443332 123356778
Q ss_pred ecCCCEEEEEEEEEEeecCCCCceEEEEEEEeccC
Q 020523 100 KKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (325)
Q Consensus 100 ~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 134 (325)
+++|..+|+.++++++.. +|.. .++++++||+
T Consensus 82 ~~~G~~~pvevs~~~i~~--~~~~-~~l~vi~dV~ 113 (114)
T d1ll8a_ 82 SRSGEKIPVSVWMKRMRQ--ERRL-CCVVVLEPVE 113 (114)
T ss_dssp CTTCCCEEEECCEECCBS--SSSB-EEEEEEEECC
T ss_pred ccCCcEEEEEEEEEEEEE--CCeE-EEEEEEEECc
Confidence 999999999999999976 4554 4689999994
No 20
>d1p97a_ d.110.3.7 (A:) Hypoxia-inducible factor Hif2a, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.25 E-value=1.6e-12 Score=90.89 Aligned_cols=73 Identities=15% Similarity=0.153 Sum_probs=59.4
Q ss_pred CCceEEecCCCCCCCeEEEehhhHHhhCCCcccccccccccccCCCCChHHHHHHHH----------hhccccCCCceee
Q 020523 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVSI----------AISPYPKKKSIYM 320 (325)
Q Consensus 251 ~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~~----------e~~~~~kdG~~~~ 320 (325)
+...+++-.+ .||+|+|+|+++++++||+++|++|+++..+++|++.....+.+.. ++++++|||+.+|
T Consensus 4 d~~~fi~r~~-~dG~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~ed~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w 82 (114)
T d1p97a_ 4 DSKTFLSRHS-MDMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYVW 82 (114)
T ss_dssp CCEEEEEEEC-TTTSCSEECTTHHHHTSSCHHHHTTSCHHHHSCSSSHHHHHHHHHHHTTTSEEEEEEEEEECTTSCEEE
T ss_pred CcCEEEEEEC-CCCcEEEECHHHHHHcCCCccccccccccccccccccccceeeeeecccccceeecceeeeeecCcceE
Confidence 3445554322 2789999999999999999999999999999988887766655554 8888999999999
Q ss_pred EEee
Q 020523 321 EYVR 324 (325)
Q Consensus 321 ~~~~ 324 (325)
++++
T Consensus 83 v~~~ 86 (114)
T d1p97a_ 83 LETQ 86 (114)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9864
No 21
>d1oj5a_ d.110.3.8 (A:) PAS domain of steroid receptor coactivator 1A, NCo-A1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.06 E-value=1.5e-10 Score=79.53 Aligned_cols=96 Identities=13% Similarity=0.156 Sum_probs=74.8
Q ss_pred EEEEcCCCCCCCEEEecHHHHHhcCCCh-hhhcCCCCCcccCCCCChH--HHHHHHHHHHhCCCeEEEEEEEecCCCEEE
Q 020523 31 FTITDPSISGHPIVFASRGFLKMSGFSR-AEIIGRNGRMFQGPRTNRR--TIMEIREAIREERPIEVNLLNYKKDGTPFW 107 (325)
Q Consensus 31 i~~~d~~~~~~~i~~~N~~~~~~~G~~~-~e~~g~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~e~~~~~~dg~~~~ 107 (325)
+.-.|.+ |+++++|+++.+++||.+ ++++|+++.++++|+|.+. ...........|.....++++.++||..+|
T Consensus 5 ~trh~~~---g~~~~vd~~~~~~~gy~~~eelig~s~~~f~HPeD~~~~~~~~~~~~~~~~g~~~~~~yR~~~kdG~~vW 81 (109)
T d1oj5a_ 5 MTKQDTT---GKIISIDTSSLRAAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVMTRGTASSPSYRFILNDGTMLS 81 (109)
T ss_dssp EEEECTT---CCEEEEECHHHHTTCCSCHHHHHHHHHHHHTSCBTTBCCHHHHHHHHHHHHSEEECCCEEEECTTSCEEE
T ss_pred EEEECCC---ceEEEECHHHhhHhhcCCHHHHcCCcHHHeECcccchHHHhhHHHHHHHhhcccchhhhhhhhccCcEEE
Confidence 3456788 999999999999999985 8999999999999988643 334456667778778888999999999999
Q ss_pred EEEEEEEeecCCCCceEEEEEE
Q 020523 108 MLFKMSLVFGKEDGRATHFVAV 129 (325)
Q Consensus 108 ~~~~~~~~~~~~~g~~~~~~~~ 129 (325)
+..++.++++...+.+..++++
T Consensus 82 v~t~~~~~~~~~~~~~~~Ii~~ 103 (109)
T d1oj5a_ 82 AHTRCKLCYPQSPDMQPFIMGI 103 (109)
T ss_dssp EEEEEEEECC----CCCEEEEE
T ss_pred EEEEEEEEECCCCCcccEEEEE
Confidence 9999999987223444444443
No 22
>d1oj5a_ d.110.3.8 (A:) PAS domain of steroid receptor coactivator 1A, NCo-A1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.00 E-value=4.5e-11 Score=82.24 Aligned_cols=62 Identities=8% Similarity=0.037 Sum_probs=51.3
Q ss_pred CCCeEEEehhhHHhhCCCc-ccccccccccccCCCCChHH-----HHHHHH-------hhccccCCCceeeEEee
Q 020523 263 DMPMVYASDAFLKLTGYDR-NEVVGQNCRFLNGVDTDTTV-----LYQVSI-------AISPYPKKKSIYMEYVR 324 (325)
Q Consensus 263 dg~i~~~N~a~~~~~Gy~~-~e~iG~~~~~l~~~~~~~~~-----~~~~~~-------e~~~~~kdG~~~~~~~~ 324 (325)
||+|+++|+++++++||.+ +|++|+++.+|++|++.+.. ...+.+ ++++++|||+.+|++.+
T Consensus 11 ~g~~~~vd~~~~~~~gy~~~eelig~s~~~f~HPeD~~~~~~~~~~~~~~~~g~~~~~~yR~~~kdG~~vWv~t~ 85 (109)
T d1oj5a_ 11 TGKIISIDTSSLRAAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVMTRGTASSPSYRFILNDGTMLSAHTR 85 (109)
T ss_dssp TCCEEEEECHHHHTTCCSCHHHHHHHHHHHHTSCBTTBCCHHHHHHHHHHHHSEEECCCEEEECTTSCEEEEEEE
T ss_pred CceEEEECHHHhhHhhcCCHHHHcCCcHHHeECcccchHHHhhHHHHHHHhhcccchhhhhhhhccCcEEEEEEE
Confidence 7899999999999999986 89999999999999886422 122222 88999999999998754
No 23
>d2oola2 d.110.3.9 (A:26-139) Sensor protein PhyB2 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=97.83 E-value=5.2e-06 Score=56.68 Aligned_cols=51 Identities=6% Similarity=0.061 Sum_probs=41.7
Q ss_pred eEEecCCCCCCCeEEEehhhHHhhCCCcccccccccccccCCCCChHHHHHHH
Q 020523 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQVS 306 (325)
Q Consensus 254 i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~~~~ 306 (325)
++++|. +||+|++++++..+++|+++++++|+++.++++|+....+.+.+.
T Consensus 20 Llvld~--~d~~I~~vS~N~~~lLG~~~~~llG~~l~dll~~~~~~~i~~~l~ 70 (114)
T d2oola2 20 LFVVSE--TDLRIASVSANVEDLLRQPPASLLNVPIAHYLTAASAARLTHALH 70 (114)
T ss_dssp EEEECT--TTCBEEEEETTHHHHHSSCGGGGTTCBGGGGBCHHHHHHHHHHHC
T ss_pred EEEEEC--CCCEEEEEcCCHHHHhCCChHHHcCCCHHHhCCHHHHHHHHHHHh
Confidence 344565 379999999999999999999999999999998876655555554
No 24
>d2oola2 d.110.3.9 (A:26-139) Sensor protein PhyB2 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=96.99 E-value=0.00048 Score=46.45 Aligned_cols=44 Identities=9% Similarity=0.041 Sum_probs=36.5
Q ss_pred EEEEcC-CCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChH
Q 020523 31 FTITDP-SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRR 77 (325)
Q Consensus 31 i~~~d~-~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~ 77 (325)
++++|. + +.+++++++...++|+++++++|+++.+++++.+...
T Consensus 20 Llvld~~d---~~I~~vS~N~~~lLG~~~~~llG~~l~dll~~~~~~~ 64 (114)
T d2oola2 20 LFVVSETD---LRIASVSANVEDLLRQPPASLLNVPIAHYLTAASAAR 64 (114)
T ss_dssp EEEECTTT---CBEEEEETTHHHHHSSCGGGGTTCBGGGGBCHHHHHH
T ss_pred EEEEECCC---CEEEEEcCCHHHHhCCChHHHcCCCHHHhCCHHHHHH
Confidence 345554 5 9999999999999999999999999998887754433
No 25
>d2veaa3 d.110.3.9 (A:4-130) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=96.55 E-value=0.00098 Score=45.68 Aligned_cols=50 Identities=10% Similarity=0.138 Sum_probs=36.6
Q ss_pred CceE-EecCCCCCCCeEEEehhhHHhhCCCcccccccccccccCCCCChHHHH
Q 020523 252 QSFV-LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLY 303 (325)
Q Consensus 252 ~~i~-~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~~~~~~~~~ 303 (325)
-|++ ++|.. |++|+.++....+++|+++++++|+++.+++++.....+..
T Consensus 26 hG~LLald~~--~~~I~~aS~N~~~~lG~~~~~lLG~~l~~ll~~~~~~~l~~ 76 (127)
T d2veaa3 26 HGLVVVLQEP--DLTISQISANCTGILGRSPEDLLGRTLGEVFDSFQIDPIQS 76 (127)
T ss_dssp TSEEEEEETT--TTEEEEEETTHHHHTSCCTTTSSTTTTTTTSBCC-------
T ss_pred CeEEEEEECC--CCEEEEEcCCHHHHhCcChHHHcCCCHHHHCCHHHHHHHHH
Confidence 3444 45653 78999999999999999999999999999997766544443
No 26
>d2o9ca2 d.110.3.9 (A:4-130) Bacteriophytochrome BphP {Deinococcus radiodurans [TaxId: 1299]}
Probab=96.46 E-value=0.0012 Score=45.26 Aligned_cols=42 Identities=19% Similarity=0.114 Sum_probs=35.3
Q ss_pred CceEE-ecCCCCCCCeEEEehhhHHhhCCCcccccccccccccCC
Q 020523 252 QSFVL-IDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGV 295 (325)
Q Consensus 252 ~~i~~-~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~ 295 (325)
-|+++ +|.. |++|+.++....+++|+++++++|+++.++++.
T Consensus 35 hG~LLald~~--~~~I~~~S~N~~~~lG~~~~~llG~~l~~ll~~ 77 (127)
T d2o9ca2 35 HGALLTADGH--SGEVLQMSLNAATFLGQEPTVLRGQTLAALLPE 77 (127)
T ss_dssp TSEEEEEETT--TCBEEEEETTHHHHHSSCHHHHTTCBHHHHCTT
T ss_pred CeEEEEEECC--CCEEEEECCCHHHHhCCChHHHcCCCHHHHCCH
Confidence 34444 4653 689999999999999999999999999999853
No 27
>d2veaa3 d.110.3.9 (A:4-130) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=93.32 E-value=0.052 Score=36.69 Aligned_cols=44 Identities=14% Similarity=0.062 Sum_probs=33.9
Q ss_pred EEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChH
Q 020523 32 TITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRR 77 (325)
Q Consensus 32 ~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~ 77 (325)
+++|.. ++.+..++.....++|+++++++|+++..++++.....
T Consensus 30 Lald~~--~~~I~~aS~N~~~~lG~~~~~lLG~~l~~ll~~~~~~~ 73 (127)
T d2veaa3 30 VVLQEP--DLTISQISANCTGILGRSPEDLLGRTLGEVFDSFQIDP 73 (127)
T ss_dssp EEEETT--TTEEEEEETTHHHHTSCCTTTSSTTTTTTTSBCC----
T ss_pred EEEECC--CCEEEEEcCCHHHHhCcChHHHcCCCHHHHCCHHHHHH
Confidence 455542 38999999999999999999999999988887654443
No 28
>d2o9ca2 d.110.3.9 (A:4-130) Bacteriophytochrome BphP {Deinococcus radiodurans [TaxId: 1299]}
Probab=92.15 E-value=0.31 Score=32.66 Aligned_cols=39 Identities=10% Similarity=0.018 Sum_probs=32.6
Q ss_pred EEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCC
Q 020523 32 TITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGP 72 (325)
Q Consensus 32 ~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~ 72 (325)
+++|.. ++.+..++.....++|++.++++|+++..+++.
T Consensus 39 Lald~~--~~~I~~~S~N~~~~lG~~~~~llG~~l~~ll~~ 77 (127)
T d2o9ca2 39 LTADGH--SGEVLQMSLNAATFLGQEPTVLRGQTLAALLPE 77 (127)
T ss_dssp EEEETT--TCBEEEEETTHHHHHSSCHHHHTTCBHHHHCTT
T ss_pred EEEECC--CCEEEEECCCHHHHhCCChHHHcCCCHHHHCCH
Confidence 455542 399999999999999999999999998887753
No 29
>d3c2wa3 d.110.3.9 (A:5-117) Bacteriophytochrome BphP {Pseudomonas aeruginosa [TaxId: 287]}
Probab=81.59 E-value=0.39 Score=31.34 Aligned_cols=39 Identities=15% Similarity=0.070 Sum_probs=29.8
Q ss_pred ceE-EecCCCCCCCeEEEehhhHHhhCCCcccccccccccccCC
Q 020523 253 SFV-LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGV 295 (325)
Q Consensus 253 ~i~-~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~~~~~l~~~ 295 (325)
|++ ++|+ |+.|+.++....+++|++++ .+|+...+++.+
T Consensus 23 G~LLald~---~~~I~~~S~N~~~~lg~~~~-~L~~~~~~~~~~ 62 (113)
T d3c2wa3 23 GALVTLRA---DGMVLAASENIQALLGFVAS-PGSYLTQEQVGP 62 (113)
T ss_dssp EEEEEECT---TSBEEEEETTHHHHTSSCCC-TTCBCCHHHHHH
T ss_pred eEEEEEcC---CCeEEEEcCCHHHHhCCChh-HhcccHHHHhCH
Confidence 444 4554 68999999999999999864 678887776644
No 30
>d3c2wa3 d.110.3.9 (A:5-117) Bacteriophytochrome BphP {Pseudomonas aeruginosa [TaxId: 287]}
Probab=63.45 E-value=13 Score=23.59 Aligned_cols=71 Identities=13% Similarity=0.111 Sum_probs=40.7
Q ss_pred EEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCCCeEEEEEEEecCCCEEEEEE
Q 020523 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLF 110 (325)
Q Consensus 31 i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~~~~~ 110 (325)
++++|++ +.++.++.....++|++.+ .+|.....++.+ .....+...+........... ...+|..+++.+
T Consensus 25 LLald~~---~~I~~~S~N~~~~lg~~~~-~L~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~d~~~ 95 (113)
T d3c2wa3 25 LVTLRAD---GMVLAASENIQALLGFVAS-PGSYLTQEQVGP----EVLRMLEEGLTGNGPWSNSVE-TRIGEHLFDVIG 95 (113)
T ss_dssp EEEECTT---SBEEEEETTHHHHTSSCCC-TTCBCCHHHHHH----HHHHHHHHHHSCSSCCCCEEE-ECCSSSCEEEEE
T ss_pred EEEEcCC---CeEEEEcCCHHHHhCCChh-HhcccHHHHhCH----HHHHHHHhhhhcCCCceeEEE-eccCCeEEEEEE
Confidence 3566877 9999999999999999865 456554443322 223344444444433333222 234555555433
No 31
>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}
Probab=35.40 E-value=7.3 Score=26.05 Aligned_cols=38 Identities=13% Similarity=0.311 Sum_probs=28.1
Q ss_pred hhhccCCceEEecCCCCCCCeEEEehhhHHhhCCCccccccc
Q 020523 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQ 287 (325)
Q Consensus 246 ~~~~~~~~i~~~d~~~~dg~i~~~N~a~~~~~Gy~~~e~iG~ 287 (325)
+....|++++++-.+ ++-.....+.+.+||++.-++|+
T Consensus 105 i~k~~p~aivivvtN----PvDv~t~~~~~~sglp~~rViG~ 142 (142)
T d1uxja1 105 AAPLSPNAVIIMVNN----PLDAMTYLAAEVSGFPKERVIGQ 142 (142)
T ss_dssp HGGGCTTCEEEECSS----SHHHHHHHHHHHHCCCGGGEEEC
T ss_pred HhccCCCceEEEeCC----chHHHHHHHHHHHCcCcccccCc
Confidence 445568888887553 45445666888999999999986
No 32
>d1p0za_ d.110.6.1 (A:) Sensor kinase CitA {Klebsiella pneumoniae [TaxId: 573]}
Probab=23.05 E-value=55 Score=20.83 Aligned_cols=90 Identities=16% Similarity=0.082 Sum_probs=50.2
Q ss_pred HHHHHHHHhhCCC-eEEEEcCCCCCCCEEEecHHHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhCCCeEEE
Q 020523 17 TLWVHEALDELPD-SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVN 95 (325)
Q Consensus 17 ~~~~~~~~~~~~~-~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 95 (325)
...+..+.+.... -+++.|.+ |.++..+.. ..+|.+... +.. .+.+..+..+...
T Consensus 38 ~~~~~~l~~~~~~~~i~v~D~~---G~v~a~~~~----------~~iG~~~~~---~~~--------~~a~~~g~~~~~~ 93 (131)
T d1p0za_ 38 KALIDPMRSFSDATYITVGDAS---GQRLYHVNP----------DEIGKSMEG---GDS--------DEALINAKSYVSV 93 (131)
T ss_dssp HHHHHHHHHHSCCSEEEEEETT---SBEEECSSG----------GGTTSBCCS---SCC--------HHHHHHCCCEEEE
T ss_pred HHHHHHHHHHcCCcEEEEECCC---CCEEEccCh----------hhcCCcccc---cch--------HHHHHcCCcEEEE
Confidence 3445555555444 57889999 987754331 234544321 111 1223344443221
Q ss_pred EEEEecCCCEEEEEEEEEEeecCCCCceEEEEEEEeccCcc
Q 020523 96 LLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (325)
Q Consensus 96 ~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DITe~ 136 (325)
....+.. ......|+.+ .+|.++|++.+..++.+.
T Consensus 94 ---~~g~~g~--~~~~~~PI~~-~~G~viGvV~Vg~~l~~i 128 (131)
T d1p0za_ 94 ---RKGSLGS--SLRGKSPIQD-ATGKVIGIVSVGYTIEQL 128 (131)
T ss_dssp ---EEETTEE--EEEEEEEEEC-TTCCEEEEEEEEEEGGGC
T ss_pred ---EecCCcc--EEEEEEEEEC-CCCcEEEEEEEEEEhHHh
Confidence 1222322 3356789998 789999999988887654
No 33
>d1smpi_ b.61.2.1 (I:) Metalloprotease inhibitor {Erwinia chrysanthemi [TaxId: 556]}
Probab=21.20 E-value=29 Score=21.27 Aligned_cols=24 Identities=8% Similarity=0.047 Sum_probs=19.2
Q ss_pred cCCceEEecCCCCCCCeEEEehhhHH
Q 020523 250 IKQSFVLIDPHLPDMPMVYASDAFLK 275 (325)
Q Consensus 250 ~~~~i~~~d~~~~dg~i~~~N~a~~~ 275 (325)
.||||.+++.++ ..|.+.|+.-..
T Consensus 61 tPDGiaLt~~~G--s~i~ffsR~~eg 84 (100)
T d1smpi_ 61 TPDGLTLTQADG--SAVAFFSRNRDR 84 (100)
T ss_dssp CSSEEEEECTTS--CEEEEEEEETTE
T ss_pred CCCeEEEecCCC--CeEEeeeecCcc
Confidence 489999999974 578899987654
Done!