Query 020526
Match_columns 325
No_of_seqs 127 out of 1274
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 03:05:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020526.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020526hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00452 actin; Provisional 100.0 2.8E-78 6E-83 564.3 29.0 315 2-325 6-375 (375)
2 PTZ00466 actin-like protein; P 100.0 5.1E-77 1.1E-81 556.3 29.8 315 1-325 12-380 (380)
3 KOG0676 Actin and related prot 100.0 3.3E-78 7.2E-83 547.6 20.4 312 2-325 8-372 (372)
4 PTZ00281 actin; Provisional 100.0 1.9E-76 4.1E-81 553.2 27.4 316 1-325 6-376 (376)
5 PTZ00004 actin-2; Provisional 100.0 2.8E-74 6.1E-79 539.2 27.4 315 2-325 7-378 (378)
6 KOG0679 Actin-related protein 100.0 6.5E-74 1.4E-78 506.1 22.3 317 2-325 12-426 (426)
7 PTZ00280 Actin-related protein 100.0 8.6E-71 1.9E-75 521.8 28.7 314 1-323 4-408 (414)
8 PF00022 Actin: Actin; InterP 100.0 1.9E-70 4.2E-75 517.7 23.1 316 1-325 4-393 (393)
9 smart00268 ACTIN Actin. ACTIN 100.0 1.7E-68 3.7E-73 500.9 28.2 315 2-325 2-373 (373)
10 KOG0677 Actin-related protein 100.0 8.1E-67 1.8E-71 439.7 18.9 313 2-323 5-386 (389)
11 cd00012 ACTIN Actin; An ubiqui 100.0 2.8E-65 6E-70 478.8 27.2 312 3-323 1-371 (371)
12 COG5277 Actin and related prot 100.0 3.6E-63 7.7E-68 465.1 25.5 314 3-325 8-444 (444)
13 KOG0680 Actin-related protein 100.0 3.4E-61 7.5E-66 416.1 21.7 315 1-325 3-399 (400)
14 KOG0678 Actin-related protein 100.0 2E-51 4.4E-56 356.0 10.3 311 3-322 6-407 (415)
15 KOG0681 Actin-related protein 100.0 8E-49 1.7E-53 359.3 18.9 314 2-324 24-639 (645)
16 KOG0797 Actin-related protein 100.0 2.2E-32 4.7E-37 249.8 15.4 268 55-325 183-615 (618)
17 PRK13930 rod shape-determining 100.0 2.2E-31 4.7E-36 246.3 17.3 269 3-298 10-327 (335)
18 PRK13927 rod shape-determining 100.0 1.1E-30 2.5E-35 241.4 16.6 266 3-298 7-323 (334)
19 TIGR00904 mreB cell shape dete 100.0 2.2E-28 4.7E-33 225.9 17.0 265 4-298 5-326 (333)
20 PRK13929 rod-share determining 100.0 5.9E-27 1.3E-31 216.2 19.0 264 2-296 5-323 (335)
21 PF06723 MreB_Mbl: MreB/Mbl pr 99.9 5.4E-26 1.2E-30 206.2 17.9 272 2-298 2-320 (326)
22 PRK13928 rod shape-determining 99.9 2.2E-24 4.8E-29 199.4 17.3 268 3-298 5-322 (336)
23 COG1077 MreB Actin-like ATPase 99.8 1.4E-20 3.1E-25 165.5 14.4 270 2-296 7-328 (342)
24 TIGR02529 EutJ ethanolamine ut 99.6 2.7E-15 5.9E-20 131.9 13.9 201 54-295 28-238 (239)
25 PRK15080 ethanolamine utilizat 99.6 1.5E-13 3.2E-18 122.9 16.0 227 4-297 27-267 (267)
26 CHL00094 dnaK heat shock prote 99.2 5.8E-10 1.3E-14 111.2 16.8 148 2-155 3-207 (621)
27 PRK00290 dnaK molecular chaper 99.2 4.3E-10 9.4E-15 112.4 15.8 66 88-154 134-204 (627)
28 PTZ00186 heat shock 70 kDa pre 99.2 1.6E-09 3.5E-14 108.1 17.7 68 88-156 161-235 (657)
29 TIGR01991 HscA Fe-S protein as 99.1 7.2E-10 1.6E-14 110.0 14.8 268 3-299 1-360 (599)
30 PTZ00400 DnaK-type molecular c 99.1 2.6E-09 5.7E-14 107.1 18.4 66 87-153 174-244 (663)
31 TIGR02350 prok_dnaK chaperone 99.1 1E-09 2.3E-14 109.1 15.3 145 3-153 2-201 (595)
32 PRK05183 hscA chaperone protei 99.1 1.8E-09 3.9E-14 107.5 15.8 145 3-153 21-219 (616)
33 PRK01433 hscA chaperone protei 99.1 4.1E-09 8.8E-14 104.3 17.6 265 3-299 21-356 (595)
34 PLN03184 chloroplast Hsp70; Pr 99.1 2.3E-09 5E-14 107.6 15.9 145 3-153 41-242 (673)
35 PRK13411 molecular chaperone D 99.1 2.5E-09 5.4E-14 107.2 15.8 65 88-153 134-204 (653)
36 PRK13410 molecular chaperone D 99.1 4.5E-09 9.8E-14 105.3 16.7 65 88-153 136-205 (668)
37 PTZ00009 heat shock 70 kDa pro 99.0 9.5E-09 2.1E-13 103.1 18.0 66 87-153 140-212 (653)
38 COG4820 EutJ Ethanolamine util 99.0 2E-09 4.3E-14 89.1 8.6 201 4-262 32-250 (277)
39 TIGR01174 ftsA cell division p 98.8 4.2E-07 9.2E-12 85.4 18.0 165 99-276 156-347 (371)
40 PF00012 HSP70: Hsp70 protein; 98.8 5E-08 1.1E-12 97.4 12.1 186 88-298 136-375 (602)
41 PRK11678 putative chaperone; P 98.7 6.5E-07 1.4E-11 85.8 16.0 66 88-153 150-227 (450)
42 PRK09472 ftsA cell division pr 98.6 1.5E-07 3.2E-12 89.7 10.2 185 100-299 165-388 (420)
43 PRK13917 plasmid segregation p 98.6 3.1E-07 6.7E-12 85.2 11.8 103 66-168 88-218 (344)
44 COG0443 DnaK Molecular chapero 98.4 1E-05 2.2E-10 79.9 14.9 147 2-154 6-191 (579)
45 PF11104 PilM_2: Type IV pilus 98.4 3E-06 6.4E-11 78.7 10.5 116 136-276 181-307 (340)
46 TIGR03739 PRTRC_D PRTRC system 98.3 1.9E-06 4.2E-11 79.2 8.8 100 66-168 84-200 (320)
47 TIGR01175 pilM type IV pilus a 98.2 0.0002 4.4E-09 66.6 19.9 143 99-262 141-306 (348)
48 COG0849 ftsA Cell division ATP 97.8 0.00011 2.5E-09 69.2 9.2 184 99-299 163-380 (418)
49 COG4972 PilM Tfp pilus assembl 97.6 0.0018 4E-08 58.2 13.0 119 137-280 195-324 (354)
50 KOG0104 Molecular chaperones G 97.2 0.007 1.5E-07 59.9 13.3 66 87-153 158-233 (902)
51 TIGR00241 CoA_E_activ CoA-subs 97.1 0.009 2E-07 52.9 12.4 42 241-295 206-247 (248)
52 COG1924 Activator of 2-hydroxy 97.1 0.009 2E-07 54.9 12.2 44 242-298 346-389 (396)
53 TIGR03286 methan_mark_15 putat 96.9 0.0068 1.5E-07 56.7 9.6 49 237-298 354-402 (404)
54 TIGR03192 benz_CoA_bzdQ benzoy 96.8 0.013 2.9E-07 52.6 10.3 49 237-298 238-287 (293)
55 PRK10719 eutA reactivating fac 96.8 0.13 2.9E-06 49.0 17.3 149 3-168 8-177 (475)
56 PF06406 StbA: StbA protein; 96.0 0.051 1.1E-06 50.0 9.7 161 4-168 3-198 (318)
57 KOG0103 Molecular chaperones H 95.9 0.22 4.7E-06 49.3 13.7 67 86-153 136-214 (727)
58 COG0248 GppA Exopolyphosphatas 95.7 0.13 2.8E-06 49.9 11.2 198 1-249 3-212 (492)
59 PRK10854 exopolyphosphatase; P 95.6 0.14 2.9E-06 50.4 11.4 139 2-159 12-161 (513)
60 PRK11031 guanosine pentaphosph 95.6 0.13 2.8E-06 50.3 11.0 72 87-160 78-157 (496)
61 KOG0100 Molecular chaperones G 95.5 0.22 4.8E-06 46.3 11.4 73 79-155 167-247 (663)
62 TIGR02261 benz_CoA_red_D benzo 95.5 0.055 1.2E-06 48.0 7.4 50 240-297 213-262 (262)
63 COG1548 Predicted transcriptio 95.5 0.097 2.1E-06 45.7 8.5 23 134-156 129-151 (330)
64 KOG0101 Molecular chaperones H 95.2 0.2 4.3E-06 49.6 10.8 67 86-153 142-215 (620)
65 TIGR03706 exo_poly_only exopol 94.5 0.4 8.7E-06 43.6 10.4 71 87-159 72-149 (300)
66 TIGR00671 baf pantothenate kin 93.5 1.8 3.9E-05 38.1 12.3 15 4-18 2-16 (243)
67 PRK13321 pantothenate kinase; 93.3 1.6 3.6E-05 38.7 11.9 16 3-18 2-17 (256)
68 TIGR03123 one_C_unchar_1 proba 93.3 1.4 3E-05 40.4 11.3 29 132-160 125-153 (318)
69 TIGR02259 benz_CoA_red_A benzo 92.7 0.12 2.6E-06 48.3 3.7 51 238-297 381-432 (432)
70 PF01869 BcrAD_BadFG: BadF/Bad 92.1 1.6 3.4E-05 38.9 10.1 47 242-297 224-271 (271)
71 PF06277 EutA: Ethanolamine ut 91.7 4.8 0.0001 38.7 13.1 149 2-162 4-170 (473)
72 PRK13318 pantothenate kinase; 91.5 6 0.00013 35.1 13.2 16 3-18 2-17 (258)
73 PRK13326 pantothenate kinase; 90.6 6.9 0.00015 34.9 12.5 16 3-18 8-23 (262)
74 PF01968 Hydantoinase_A: Hydan 90.3 0.34 7.4E-06 43.9 4.0 34 128-161 69-103 (290)
75 COG1521 Pantothenate kinase ty 89.9 3.4 7.3E-05 36.5 9.7 18 3-21 2-19 (251)
76 KOG1794 N-Acetylglucosamine ki 88.6 5.5 0.00012 35.8 9.9 221 66-298 47-315 (336)
77 PRK13317 pantothenate kinase; 86.5 0.98 2.1E-05 40.6 4.3 71 218-298 201-273 (277)
78 PRK13324 pantothenate kinase; 86.5 21 0.00045 31.8 12.6 16 3-18 2-17 (258)
79 PF07318 DUF1464: Protein of u 86.3 3.3 7.2E-05 38.1 7.6 31 132-162 151-181 (343)
80 PRK13320 pantothenate kinase; 86.3 22 0.00047 31.3 12.6 16 3-18 4-19 (244)
81 PF03309 Pan_kinase: Type III 82.2 26 0.00056 29.8 11.1 15 4-18 2-16 (206)
82 PF02541 Ppx-GppA: Ppx/GppA ph 75.8 4 8.7E-05 36.7 4.3 78 87-168 58-143 (285)
83 KOG0102 Molecular chaperones m 75.1 12 0.00026 36.6 7.2 69 87-156 160-235 (640)
84 PF03702 UPF0075: Uncharacteri 71.1 3 6.5E-05 39.0 2.3 24 239-262 285-308 (364)
85 PF08735 DUF1786: Putative pyr 66.6 33 0.00072 30.3 7.7 56 102-158 128-190 (254)
86 TIGR00744 ROK_glcA_fam ROK fam 63.6 73 0.0016 28.8 9.9 53 106-160 89-148 (318)
87 TIGR03367 queuosine_QueD queuo 62.1 13 0.00028 27.3 3.8 50 58-115 42-91 (92)
88 PRK13322 pantothenate kinase; 59.2 14 0.00031 32.5 4.2 16 3-18 2-17 (246)
89 COG0278 Glutaredoxin-related p 58.8 24 0.00053 26.4 4.6 72 218-308 3-78 (105)
90 PRK13310 N-acetyl-D-glucosamin 56.7 13 0.00029 33.5 3.7 54 105-160 87-147 (303)
91 PRK09557 fructokinase; Reviewe 56.2 1.4E+02 0.0029 26.9 10.3 54 105-160 87-147 (301)
92 PRK09585 anmK anhydro-N-acetyl 54.9 12 0.00027 35.0 3.2 22 241-262 289-310 (365)
93 PRK05082 N-acetylmannosamine k 54.8 18 0.00039 32.4 4.3 53 106-160 88-146 (291)
94 PRK09557 fructokinase; Reviewe 54.7 17 0.00037 32.8 4.1 38 218-262 231-268 (301)
95 KOG1385 Nucleoside phosphatase 54.6 78 0.0017 30.1 8.2 18 134-151 212-229 (453)
96 COG0145 HyuA N-methylhydantoin 53.1 14 0.00031 37.5 3.6 34 128-161 269-304 (674)
97 PF02782 FGGY_C: FGGY family o 52.4 13 0.00029 31.0 2.8 47 238-298 149-195 (198)
98 PRK05082 N-acetylmannosamine k 52.3 1.7E+02 0.0037 26.0 11.4 66 218-297 220-286 (291)
99 smart00842 FtsA Cell division 51.7 48 0.001 27.6 6.1 23 56-78 36-58 (187)
100 PRK13329 pantothenate kinase; 49.4 1.9E+02 0.004 25.6 11.0 18 1-18 1-18 (249)
101 cd08626 PI-PLCc_beta4 Catalyti 47.0 36 0.00077 30.2 4.6 42 67-115 77-118 (257)
102 smart00732 YqgFc Likely ribonu 47.0 23 0.00051 25.7 3.1 18 1-18 1-18 (99)
103 COG4012 Uncharacterized protei 46.9 1.3E+02 0.0029 26.8 8.0 32 1-32 1-34 (342)
104 PRK13331 pantothenate kinase; 46.7 31 0.00067 30.6 4.2 103 125-251 103-216 (251)
105 cd08627 PI-PLCc_gamma1 Catalyt 46.6 38 0.00082 29.5 4.6 30 86-115 87-116 (229)
106 PRK14878 UGMP family protein; 45.1 13 0.00029 34.1 1.8 55 239-298 242-297 (323)
107 KOG2960 Protein involved in th 44.1 14 0.00029 31.9 1.5 79 233-320 70-152 (328)
108 cd08630 PI-PLCc_delta3 Catalyt 43.6 43 0.00094 29.7 4.6 30 86-115 87-116 (258)
109 cd08596 PI-PLCc_epsilon Cataly 43.4 44 0.00095 29.6 4.6 30 86-115 87-116 (254)
110 cd08594 PI-PLCc_eta Catalytic 43.3 44 0.00096 29.0 4.6 30 86-115 87-116 (227)
111 cd08629 PI-PLCc_delta1 Catalyt 43.0 43 0.00094 29.7 4.5 30 86-115 87-116 (258)
112 cd08632 PI-PLCc_eta1 Catalytic 43.0 45 0.00098 29.5 4.6 30 86-115 87-116 (253)
113 cd08593 PI-PLCc_delta Catalyti 42.6 43 0.00094 29.7 4.5 30 86-115 87-116 (257)
114 PRK09698 D-allose kinase; Prov 42.5 39 0.00085 30.4 4.5 53 106-160 96-154 (302)
115 cd08633 PI-PLCc_eta2 Catalytic 42.0 48 0.001 29.4 4.6 30 86-115 87-116 (254)
116 COG0533 QRI7 Metal-dependent p 41.8 19 0.00042 33.2 2.3 63 233-299 256-318 (342)
117 cd08631 PI-PLCc_delta4 Catalyt 41.3 47 0.001 29.5 4.5 30 86-115 87-116 (258)
118 cd08595 PI-PLCc_zeta Catalytic 41.2 48 0.001 29.4 4.5 30 86-115 87-116 (257)
119 cd08592 PI-PLCc_gamma Catalyti 40.8 50 0.0011 28.8 4.5 30 86-115 87-116 (229)
120 cd08591 PI-PLCc_beta Catalytic 40.6 49 0.0011 29.3 4.5 30 86-115 89-118 (257)
121 cd08598 PI-PLC1c_yeast Catalyt 39.2 54 0.0012 28.6 4.5 30 86-115 87-116 (231)
122 cd08558 PI-PLCc_eukaryota Cata 38.8 58 0.0013 28.3 4.6 30 86-115 87-116 (226)
123 TIGR01319 glmL_fam conserved h 38.6 43 0.00093 32.3 4.1 67 96-162 189-276 (463)
124 PTZ00340 O-sialoglycoprotein e 38.4 15 0.00033 34.1 1.1 56 239-298 264-319 (345)
125 cd08597 PI-PLCc_PRIP_metazoa C 37.8 58 0.0013 29.0 4.5 30 86-115 87-116 (260)
126 cd08628 PI-PLCc_gamma2 Catalyt 36.5 63 0.0014 28.6 4.6 30 86-115 87-116 (254)
127 KOG2707 Predicted metalloprote 36.4 51 0.0011 30.6 4.0 74 219-299 288-362 (405)
128 PF09693 Phage_XkdX: Phage unc 35.5 20 0.00043 21.9 0.9 10 305-314 25-34 (40)
129 cd08624 PI-PLCc_beta2 Catalyti 34.4 68 0.0015 28.5 4.4 30 86-115 89-119 (261)
130 PF08841 DDR: Diol dehydratase 34.1 64 0.0014 29.1 4.1 55 100-154 94-153 (332)
131 TIGR00039 6PTHBS 6-pyruvoyl te 33.4 54 0.0012 25.5 3.3 52 58-115 44-95 (124)
132 PRK13328 pantothenate kinase; 33.2 3.4E+02 0.0075 23.9 9.9 17 2-18 2-18 (255)
133 PF13941 MutL: MutL protein 33.0 53 0.0012 31.8 3.8 67 97-163 194-276 (457)
134 cd08623 PI-PLCc_beta1 Catalyti 32.7 78 0.0017 28.1 4.5 30 86-115 89-119 (258)
135 TIGR01669 phage_XkdX phage unc 32.1 22 0.00048 22.4 0.7 10 305-314 30-39 (45)
136 PRK00976 hypothetical protein; 32.0 70 0.0015 29.5 4.2 35 126-161 140-174 (326)
137 PRK09417 mogA molybdenum cofac 31.8 44 0.00096 28.3 2.8 41 215-262 50-107 (193)
138 cd08625 PI-PLCc_beta3 Catalyti 31.2 76 0.0016 28.2 4.2 30 86-115 89-119 (258)
139 TIGR00555 panK_eukar pantothen 30.9 62 0.0013 29.2 3.7 50 217-266 208-259 (279)
140 KOG2708 Predicted metalloprote 30.2 74 0.0016 27.8 3.8 25 132-156 121-145 (336)
141 PRK03011 butyrate kinase; Prov 30.0 44 0.00095 31.3 2.7 27 134-161 175-201 (358)
142 PF14450 FtsA: Cell division p 27.4 77 0.0017 24.3 3.3 22 138-159 2-23 (120)
143 cd08599 PI-PLCc_plant Catalyti 26.4 1.2E+02 0.0027 26.3 4.6 30 86-115 87-116 (228)
144 PRK13333 pantothenate kinase; 25.4 80 0.0017 27.1 3.2 27 126-155 77-103 (206)
145 TIGR00744 ROK_glcA_fam ROK fam 24.8 95 0.0021 28.1 3.9 67 219-298 239-309 (318)
146 TIGR01312 XylB D-xylulose kina 23.4 1.2E+02 0.0026 29.3 4.5 47 239-299 391-437 (481)
147 TIGR00177 molyb_syn molybdenum 23.3 62 0.0013 25.7 2.1 27 215-250 52-78 (144)
148 PLN02952 phosphoinositide phos 23.2 1.3E+02 0.0028 30.3 4.7 30 86-115 209-238 (599)
149 TIGR02707 butyr_kinase butyrat 22.9 6.2E+02 0.013 23.6 12.6 130 2-161 1-199 (351)
150 PLN02230 phosphoinositide phos 22.3 1.3E+02 0.0027 30.4 4.4 30 86-115 200-229 (598)
151 KOG1386 Nucleoside phosphatase 22.3 7.5E+02 0.016 24.3 9.7 102 66-168 65-198 (501)
152 PRK00976 hypothetical protein; 21.7 1.1E+02 0.0023 28.3 3.5 38 218-262 250-289 (326)
153 TIGR03722 arch_KAE1 universal 21.7 66 0.0014 29.5 2.2 24 239-262 243-266 (322)
154 PLN02228 Phosphoinositide phos 21.6 1.4E+02 0.0031 29.8 4.5 30 86-115 192-221 (567)
155 PLN02222 phosphoinositide phos 21.4 1.3E+02 0.0028 30.2 4.2 30 86-115 189-218 (581)
156 PLN02223 phosphoinositide phos 21.3 1.6E+02 0.0035 29.1 4.8 43 67-115 180-222 (537)
157 COG1940 NagC Transcriptional r 20.5 1.5E+02 0.0032 26.8 4.3 52 107-160 99-157 (314)
158 PRK09605 bifunctional UGMP fam 20.5 68 0.0015 31.7 2.1 81 65-150 49-138 (535)
159 cd00470 PTPS 6-pyruvoyl tetrah 20.4 1.3E+02 0.0028 23.7 3.4 51 59-115 57-109 (135)
160 TIGR01234 L-ribulokinase L-rib 20.3 1.7E+02 0.0037 28.9 4.9 47 239-299 436-483 (536)
161 COG0849 ftsA Cell division ATP 20.1 1.6E+02 0.0036 28.2 4.5 58 3-78 8-65 (418)
No 1
>PTZ00452 actin; Provisional
Probab=100.00 E-value=2.8e-78 Score=564.29 Aligned_cols=315 Identities=35% Similarity=0.621 Sum_probs=287.9
Q ss_pred ceEEEEcCCCcEEEeeeCCCCCCcEecccceeecCC----------CcccccCcccccc-Ccee-ccccCCeecCHHHHH
Q 020526 2 EAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLE----------DGSSSVDNSTLVE-DVTV-DPVVRGFIRDWDAME 69 (325)
Q Consensus 2 ~~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~~----------~~~~g~~~~~~~~-~~~~-~p~~~g~i~d~~~~~ 69 (325)
++||||+||+++|+||| ||+.|+.++||.+++... +.++| +++...+ .+++ +|+++|.|.|||.+|
T Consensus 6 ~~vViD~Gs~~~k~G~a-ge~~P~~i~ps~vg~~~~~~~~~~~~~~~~~iG-~~~~~~~~~~~l~~Pi~~G~I~dwd~~e 83 (375)
T PTZ00452 6 PAVVIDNGSGYCKIGIA-GDDAPTSCFPAIVGRSKQNDGIFSTFNKEYYVG-EEAQAKRGVLAIKEPIQNGIINSWDDIE 83 (375)
T ss_pred CEEEEECCCCeEEEeeC-CCCCcCEEecceeEEECCccccccccccceEEC-hhhhccccCcEEcccCcCCEEcCHHHHH
Confidence 47999999999999999 999999999999976422 24678 7764443 4554 999999999999999
Q ss_pred HHHHHHHHhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCCceEEEEEcCCCceEE
Q 020526 70 DLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDI 149 (325)
Q Consensus 70 ~il~~~~~~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVdiG~~~t~v 149 (325)
.+|+|+|.+.|+++| .++|++++|++++++..|++++|++||+|++|++++.++++|++|++|++||+|||+|++.|+|
T Consensus 84 ~iw~~~f~~~l~v~p-~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~~tglVVDiG~~~t~v 162 (375)
T PTZ00452 84 IIWHHAFYNELCMSP-EDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGKTIGLVVDSGEGVTHC 162 (375)
T ss_pred HHHHHHHHhhcCCCc-ccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCCceeeeecCCCCcceE
Confidence 999999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCeeccccceeecCcc--------------------------------hhchh-----hhcc-----cCCcceEEC
Q 020526 150 APVIEGAVQHIASRRFEVGD--------------------------------ELAYE-----KTQK-----SCEIEQHTL 187 (325)
Q Consensus 150 ~pv~~G~~i~~~~~~~~~ge--------------------------------~~~~~-----~~~~-----~~~~~~~~l 187 (325)
+||+||+++.+++.++++|. +.+|. ++.. ....+.|+|
T Consensus 163 ~PV~dG~~l~~~~~r~~~gG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~L 242 (375)
T PTZ00452 163 VPVFEGHQIPQAITKINLAGRLCTDYLTQILQELGYSLTEPHQRIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYKL 242 (375)
T ss_pred EEEECCEEeccceEEeeccchHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEEC
Confidence 99999999999999999991 12221 1110 112368999
Q ss_pred CCCcEEEecceeeccccccccCCCCCCcCCcHHHHHHHHHHhCChHHHHhccccEEEecCCCCccchHHHHHHhh-ccCC
Q 020526 188 PDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLCS 266 (325)
Q Consensus 188 pd~~~i~l~~e~~~~~E~lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL-~~~~ 266 (325)
|||+.+.++.||+.++|+||+|++++.+..||+++|.++|++||+|+|+.|++||+|+||+|++|||.+||++|| +++|
T Consensus 243 PDg~~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p 322 (375)
T PTZ00452 243 PDGNILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVP 322 (375)
T ss_pred CCCCEEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CCcceEEeCCCCCCCCCCCceeeeehhhhhhccCCCCCeeeeHHHHhhcCcchhhcccC
Q 020526 267 SAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF 325 (325)
Q Consensus 267 ~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~l~~~~~~~itk~ey~e~G~~~~~~k~~ 325 (325)
.+.+++|..+++ |++++|+|||++|++++|+++||||+||+|+|+++++||||
T Consensus 323 ~~~~v~v~~~~~------r~~~aW~GgSilasl~~f~~~~vtk~eYeE~G~~i~~~k~~ 375 (375)
T PTZ00452 323 SQLKIQVAAPPD------RRFSAWIGGSIQCTLSTQQPQWIKRQEYDEQGPSIVHRKCF 375 (375)
T ss_pred CCceeEEecCCC------cceeEEECchhhcCccchhhhEeEHHHHhccCcceeeeecC
Confidence 888999999888 99999999999999999999999999999999999999997
No 2
>PTZ00466 actin-like protein; Provisional
Probab=100.00 E-value=5.1e-77 Score=556.32 Aligned_cols=315 Identities=33% Similarity=0.575 Sum_probs=286.7
Q ss_pred CceEEEEcCCCcEEEeeeCCCCCCcEecccceeecC----------CCcccccCcccccc-Ccee-ccccCCeecCHHHH
Q 020526 1 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVL----------EDGSSSVDNSTLVE-DVTV-DPVVRGFIRDWDAM 68 (325)
Q Consensus 1 m~~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~----------~~~~~g~~~~~~~~-~~~~-~p~~~g~i~d~~~~ 68 (325)
+++||||+||+++|+||| ||+.|+.++||.+++.. ++.++| +++...+ .+++ +|+++|.|.|||.+
T Consensus 12 ~~~iViD~GS~~~K~G~a-g~~~P~~~~ps~vg~~k~~~~~~~~~~~~~~vG-~~~~~~~~~~~l~~Pi~~G~v~dwd~~ 89 (380)
T PTZ00466 12 NQPIIIDNGTGYIKAGFA-GEDVPNLVFPSYVGRPKYKRVMAGAVEGNIFVG-NKAEEYRGLLKVTYPINHGIIENWNDM 89 (380)
T ss_pred CCeEEEECCCCcEEEeeC-CCCCCCEeccceeeeecCccccccCCCCCeEEC-chhhhhCcCceeCccccCCeECCHHHH
Confidence 468999999999999999 99999999999987632 234678 7765444 3444 89999999999999
Q ss_pred HHHHHHHHHhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCCceEEEEEcCCCceE
Q 020526 69 EDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKID 148 (325)
Q Consensus 69 ~~il~~~~~~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVdiG~~~t~ 148 (325)
|.+|+|+| +.|++++ .++|+++++++++++..|++++|++||+|++|++++.++++||+|++|++||+|||+|++.|+
T Consensus 90 e~iw~~~f-~~l~v~~-~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~~tglVVD~G~~~t~ 167 (380)
T PTZ00466 90 ENIWIHVY-NSMKINS-EEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGKTNGTVLDCGDGVCH 167 (380)
T ss_pred HHHHHHHH-hhcccCC-ccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCCceEEEEeCCCCceE
Confidence 99999998 6799999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCeeccccceeecCcch--------------------------------hch-----hhhcc----cCCcceEEC
Q 020526 149 IAPVIEGAVQHIASRRFEVGDE--------------------------------LAY-----EKTQK----SCEIEQHTL 187 (325)
Q Consensus 149 v~pv~~G~~i~~~~~~~~~ge~--------------------------------~~~-----~~~~~----~~~~~~~~l 187 (325)
|+||+||+++.+++.++++|.+ .+| .++.. ......|+|
T Consensus 168 v~PV~~G~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~~~y~L 247 (380)
T PTZ00466 168 CVSIYEGYSITNTITRTDVAGRDITTYLGYLLRKNGHLFNTSAEMEVVKNMKENCCYVSFNMNKEKNSSEKALTTLPYIL 247 (380)
T ss_pred EEEEECCEEeecceeEecCchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhCeEecCChHHHHhhccccccceeEEC
Confidence 9999999999999999999911 122 11111 112368999
Q ss_pred CCCcEEEecceeeccccccccCCCCCCcCCcHHHHHHHHHHhCChHHHHhccccEEEecCCCCccchHHHHHHhh-ccCC
Q 020526 188 PDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLCS 266 (325)
Q Consensus 188 pd~~~i~l~~e~~~~~E~lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL-~~~~ 266 (325)
|||+.+.++.|||.+||+||+|++++.+..+|+++|.++|.+||+|.|+.|++||+|+||+|++|||.+||++|| ++.|
T Consensus 248 Pdg~~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p 327 (380)
T PTZ00466 248 PDGSQILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAP 327 (380)
T ss_pred CCCcEEEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CCcceEEeCCCCCCCCCCCceeeeehhhhhhccCCCCCeeeeHHHHhhcCcchhhcccC
Q 020526 267 SAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF 325 (325)
Q Consensus 267 ~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~l~~~~~~~itk~ey~e~G~~~~~~k~~ 325 (325)
.+.++++..+++ |.+++|+|||++|++++|++.||||+||+|+|+++++||||
T Consensus 328 ~~~~v~v~~~~~------r~~~aW~GgSilasl~~f~~~~itk~eYeE~G~~iv~rk~~ 380 (380)
T PTZ00466 328 KDITIRISAPPE------RKFSTFIGGSILASLATFKKIWISKQEFDEYGSVILHRKTF 380 (380)
T ss_pred CCceEEEecCCC------CceeEEECchhhcCccchhhhEeEHHHHhhhCcHhheeecC
Confidence 888999998888 99999999999999999999999999999999999999997
No 3
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=3.3e-78 Score=547.63 Aligned_cols=312 Identities=44% Similarity=0.735 Sum_probs=287.8
Q ss_pred ceEEEEcCCCcEEEeeeCCCCCCcEecccceeec----------CCCcccccCccccccCceeccccCCeecCHHHHHHH
Q 020526 2 EAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRV----------LEDGSSSVDNSTLVEDVTVDPVVRGFIRDWDAMEDL 71 (325)
Q Consensus 2 ~~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~----------~~~~~~g~~~~~~~~~~~~~p~~~g~i~d~~~~~~i 71 (325)
++||+|+||..+|+||| ||+.|+.++||.+++. .++.++| +++..++.+ +||+++|.|.|||+++.|
T Consensus 8 ~~vViDnGsg~~KaGfa-g~~~P~~v~ps~vg~~~~~~~~~~~~~~~~~vg-~~a~~~~~l-~~Pie~Giv~~wd~me~i 84 (372)
T KOG0676|consen 8 QAVVIDNGSGFVKAGFA-GDDAPRAVFPSIVGRPRHQGVMAGMTQKDTYVG-DEAESKRTL-KYPIERGIVTDWDDMEKI 84 (372)
T ss_pred ceEEEECCCceeecccC-CCCCCceecceeccccccccccccccccccccc-hhhhccccc-cCccccccccchHHHHHH
Confidence 68999999999999999 9999999999999762 2356788 888777622 599999999999999999
Q ss_pred HHHHHHhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCCceEEEEEcCCCceEEEE
Q 020526 72 LHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAP 151 (325)
Q Consensus 72 l~~~~~~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVdiG~~~t~v~p 151 (325)
|+|+|.+.|+++| .+||++++|++++++..||+++|++||.||+|++++..++++ |++|++||+|||+|++.|+++|
T Consensus 85 w~~if~~~L~~~P-ee~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yva~qavl--ya~g~ttG~VvD~G~gvt~~vP 161 (372)
T KOG0676|consen 85 WHHLFYSELLVAP-EEHPVLLTEPPLNPKANREKLTQIMFETFNVPALYVAIQAVL--YASGRTTGLVVDSGDGVTHVVP 161 (372)
T ss_pred HHHHHHHhhccCc-ccCceEeecCCCCchHhHHHHHHHhhhhcCccHhHHHHHHHH--HHcCCeeEEEEEcCCCceeeee
Confidence 9999999999999 999999999999999999999999999999999999776666 9999999999999999999999
Q ss_pred eecCeeccccceeecCc--------------------------------chhch-----hhhccc-----CCcceEECCC
Q 020526 152 VIEGAVQHIASRRFEVG--------------------------------DELAY-----EKTQKS-----CEIEQHTLPD 189 (325)
Q Consensus 152 v~~G~~i~~~~~~~~~g--------------------------------e~~~~-----~~~~~~-----~~~~~~~lpd 189 (325)
|++|+++++++.++++| |++|| +++... .....|++||
T Consensus 162 I~eG~~lp~ai~~ldl~G~dlt~~l~~~L~~~g~s~~~~~~~eIv~diKeklCyvald~~~e~~~~~~~~~l~~~y~lPD 241 (372)
T KOG0676|consen 162 IYEGYALPHAILRLDLAGRDLTDYLLKQLRKRGYSFTTSAEFEIVRDIKEKLCYVALDFEEEEETANTSSSLESSYELPD 241 (372)
T ss_pred cccccccchhhheecccchhhHHHHHHHHHhcccccccccHHHHHHHhHhhhcccccccchhhhcccccccccccccCCC
Confidence 99999999999999999 22344 223221 1236699999
Q ss_pred CcEEEecceeeccccccccCCCCCCcCCcHHHHHHHHHHhCChHHHHhccccEEEecCCCCccchHHHHHHhh-ccCCCC
Q 020526 190 GQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLCSSA 268 (325)
Q Consensus 190 ~~~i~l~~e~~~~~E~lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL-~~~~~~ 268 (325)
|+.+.+++|||.+||+||+|+.+|.+..+|++++.++|.+||+|+|++||+||+|+||++++|||.+||++|| .+.|+.
T Consensus 242 g~~i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~nivLsGGtT~~pGl~~Rl~kEl~~l~P~~ 321 (372)
T KOG0676|consen 242 GQKITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYENIVLSGGTTMFPGLADRLQKELQALAPST 321 (372)
T ss_pred CCEEecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHhheEEeCCcccchhHHHHHHHHHhhcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred cceEEeCCCCCCCCCCCceeeeehhhhhhccCCCCCeeeeHHHHhhcCcchhhcccC
Q 020526 269 IRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF 325 (325)
Q Consensus 269 ~~v~v~~~~~~~~~~~~~~~~W~G~si~a~l~~~~~~~itk~ey~e~G~~~~~~k~~ 325 (325)
.+++++.+|+ +.+++|+||||+|++++|+++||||+||+|+|+++++||||
T Consensus 322 ~~ikv~~pp~------r~~s~WlGgSIlaslstfq~~witk~eY~e~g~~~~~rk~f 372 (372)
T KOG0676|consen 322 IKIKVIAPPE------RKYSAWLGGSILASLSTFQQMWITKEEYEEHGPSIIHRKCF 372 (372)
T ss_pred cceEEecCcc------cccceecCceeEeecchHhhccccHHHHhhhCCceeeeccC
Confidence 9999999999 78999999999999999999999999999999999999998
No 4
>PTZ00281 actin; Provisional
Probab=100.00 E-value=1.9e-76 Score=553.20 Aligned_cols=316 Identities=43% Similarity=0.692 Sum_probs=287.7
Q ss_pred CceEEEEcCCCcEEEeeeCCCCCCcEecccceeecC----------CCcccccCcccccc-Cce-eccccCCeecCHHHH
Q 020526 1 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVL----------EDGSSSVDNSTLVE-DVT-VDPVVRGFIRDWDAM 68 (325)
Q Consensus 1 m~~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~----------~~~~~g~~~~~~~~-~~~-~~p~~~g~i~d~~~~ 68 (325)
+++||||+||+++|+||| ||+.|+.++||.+++.. .+.++| +++...+ .++ ++|+++|.|.|||.+
T Consensus 6 ~~~vViD~Gs~~~k~G~a-ge~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~l~~Pi~~G~i~dwd~~ 83 (376)
T PTZ00281 6 VQALVIDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVG-DEAQSKRGILTLKYPIEHGIVTNWDDM 83 (376)
T ss_pred CCeEEEECCCCeEEEeeC-CCCCCCeeccccceeecCcccccCcccCCeEEC-chhhccccCcEEeccCcCCEEcCHHHH
Confidence 468999999999999999 99999999999987531 134678 7765433 455 499999999999999
Q ss_pred HHHHHHHHHhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCCceEEEEEcCCCceE
Q 020526 69 EDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKID 148 (325)
Q Consensus 69 ~~il~~~~~~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVdiG~~~t~ 148 (325)
+.+|+|+|.+.|.++| +++|+++++|+++++..|++++|++||.|++|+++++++++|++|++|++||+|||+|++.|+
T Consensus 84 e~l~~~~f~~~l~v~p-~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~~tglVVDiG~~~t~ 162 (376)
T PTZ00281 84 EKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSH 162 (376)
T ss_pred HHHHHHHHHhhccCCC-ccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCCceEEEEECCCceEE
Confidence 9999999988899999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCeeccccceeecCcch--------------------------------hchh-----hhcc-----cCCcceEE
Q 020526 149 IAPVIEGAVQHIASRRFEVGDE--------------------------------LAYE-----KTQK-----SCEIEQHT 186 (325)
Q Consensus 149 v~pv~~G~~i~~~~~~~~~ge~--------------------------------~~~~-----~~~~-----~~~~~~~~ 186 (325)
|+||+||+++.++++++++|.+ .+|. .+.. ....+.|.
T Consensus 163 v~PV~dG~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~y~ 242 (376)
T PTZ00281 163 TVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYE 242 (376)
T ss_pred EEEEEecccchhheeeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcEEecCCchHHHHhhhcCcccceeEE
Confidence 9999999999999999999911 1221 1111 11236899
Q ss_pred CCCCcEEEecceeeccccccccCCCCCCcCCcHHHHHHHHHHhCChHHHHhccccEEEecCCCCccchHHHHHHhh-ccC
Q 020526 187 LPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLC 265 (325)
Q Consensus 187 lpd~~~i~l~~e~~~~~E~lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL-~~~ 265 (325)
||||+.+.++.||+.++|+||+|+..+.+..+|+++|.++|.+||+|+|+.|++||||+||+|++|||.+||++|| ++.
T Consensus 243 LPdg~~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~ 322 (376)
T PTZ00281 243 LPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALA 322 (376)
T ss_pred CCCCCEEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred CCCcceEEeCCCCCCCCCCCceeeeehhhhhhccCCCCCeeeeHHHHhhcCcchhhcccC
Q 020526 266 SSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF 325 (325)
Q Consensus 266 ~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~l~~~~~~~itk~ey~e~G~~~~~~k~~ 325 (325)
|...++++..+++ |.+++|+|||++|++++|++.||||+||+|+|+++++||||
T Consensus 323 p~~~~v~v~~~~~------r~~~aW~Ggsilasl~~f~~~~vtk~eY~E~G~~~~~~k~~ 376 (376)
T PTZ00281 323 PSTMKIKIIAPPE------RKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF 376 (376)
T ss_pred CCCcceEEecCCC------CceeEEECcccccCcccHhhceeeHHHHhhhCchheeeecC
Confidence 9888999999888 89999999999999999999999999999999999999997
No 5
>PTZ00004 actin-2; Provisional
Probab=100.00 E-value=2.8e-74 Score=539.20 Aligned_cols=315 Identities=42% Similarity=0.682 Sum_probs=286.3
Q ss_pred ceEEEEcCCCcEEEeeeCCCCCCcEecccceeecCC----------CcccccCcccccc-Ccee-ccccCCeecCHHHHH
Q 020526 2 EAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLE----------DGSSSVDNSTLVE-DVTV-DPVVRGFIRDWDAME 69 (325)
Q Consensus 2 ~~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~~----------~~~~g~~~~~~~~-~~~~-~p~~~g~i~d~~~~~ 69 (325)
++||||+||+++|+||| |++.|+.++||.+++... +.++| +++...+ .+++ +|+++|.|.|||.++
T Consensus 7 ~~vViD~Gs~~~k~G~a-g~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~l~~Pi~~G~i~d~d~~e 84 (378)
T PTZ00004 7 NAAVVDNGSGMVKAGFA-GDDAPRCVFPSIVGRPKNPGIMVGMEEKDCYVG-DEAQDKRGILTLKYPIEHGIVTNWDDME 84 (378)
T ss_pred CeEEEECCCCeEEEeeC-CCCCCCEEccceeEEecccccccCcCCCceEEC-chhhcccccceEcccCcCCEEcCHHHHH
Confidence 57999999999999999 999999999999876422 34678 7664443 3454 999999999999999
Q ss_pred HHHHHHHHhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCCceEEEEEcCCCceEE
Q 020526 70 DLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDI 149 (325)
Q Consensus 70 ~il~~~~~~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVdiG~~~t~v 149 (325)
.+|+|+|.+.|++++ .++|+++++++++++..|+++++++||.|++|++++.+++++|+|++|++||+|||+|++.|+|
T Consensus 85 ~i~~~~~~~~l~v~~-~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~~tglVVDiG~~~t~v 163 (378)
T PTZ00004 85 KIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHT 163 (378)
T ss_pred HHHHHHHHhhcccCC-ccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCCceEEEEECCCCcEEE
Confidence 999999988899999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCeeccccceeecCcch--------------------------------hch-----hhhccc----C--CcceEE
Q 020526 150 APVIEGAVQHIASRRFEVGDE--------------------------------LAY-----EKTQKS----C--EIEQHT 186 (325)
Q Consensus 150 ~pv~~G~~i~~~~~~~~~ge~--------------------------------~~~-----~~~~~~----~--~~~~~~ 186 (325)
+||+||+++.+++.++++|.+ .+| .++... . ....|.
T Consensus 164 ~pV~dG~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~~y~ 243 (378)
T PTZ00004 164 VPIYEGYSLPHAIHRLDVAGRDLTEYMMKILHERGTTFTTTAEKEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEESYE 243 (378)
T ss_pred EEEECCEEeecceeeecccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhhcceeecCCHHHHHhhhhcCccccceEEE
Confidence 999999999999999999911 122 111111 1 136799
Q ss_pred CCCCcEEEecceeeccccccccCCCCCCc-CCcHHHHHHHHHHhCChHHHHhccccEEEecCCCCccchHHHHHHhh-cc
Q 020526 187 LPDGQVIRIGKERYTVGEALFQPSILGLE-AHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GL 264 (325)
Q Consensus 187 lpd~~~i~l~~e~~~~~E~lF~p~~~~~~-~~~i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL-~~ 264 (325)
||||+.+.++.||+.+||+||+|+.++.+ ..+|+++|.++|.+||+|+|+.|++||+|+||+|++|||.+||++|| ++
T Consensus 244 lPdg~~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~ 323 (378)
T PTZ00004 244 LPDGTIITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTL 323 (378)
T ss_pred CCCCCEEEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHh
Confidence 99999999999999999999999988888 89999999999999999999999999999999999999999999999 99
Q ss_pred CCCCcceEEeCCCCCCCCCCCceeeeehhhhhhccCCCCCeeeeHHHHhhcCcchhhcccC
Q 020526 265 CSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF 325 (325)
Q Consensus 265 ~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~l~~~~~~~itk~ey~e~G~~~~~~k~~ 325 (325)
.|...+++|..+++ |.+++|+|||++|++++|++.||||+||+|+|+++++||||
T Consensus 324 ~p~~~~~~v~~~~~------~~~~aW~Ggsilas~~~f~~~~vtk~eYeE~G~~~~~rk~~ 378 (378)
T PTZ00004 324 APSTMKIKVVAPPE------RKYSVWIGGSILSSLPTFQQMWVTKEEYDESGPSIVHRKCF 378 (378)
T ss_pred CCCCccEEEecCCC------CceeEEECcccccCccchhhhEeEHHHHhhhCcceEEeecC
Confidence 99888999998887 99999999999999999999999999999999999999997
No 6
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=100.00 E-value=6.5e-74 Score=506.14 Aligned_cols=317 Identities=29% Similarity=0.514 Sum_probs=280.8
Q ss_pred ceEEEEcCCCcEEEeeeCCCCCCcEecccceeec---------CCCcccccCccc-ccc-Ccee-ccccCCeecCHHHHH
Q 020526 2 EAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRV---------LEDGSSSVDNST-LVE-DVTV-DPVVRGFIRDWDAME 69 (325)
Q Consensus 2 ~~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~---------~~~~~~g~~~~~-~~~-~~~~-~p~~~g~i~d~~~~~ 69 (325)
++||||+||+++|+||| |++.|++++||+++.. .+..+++ .++. ..+ ++++ .|+++|.+.|||.++
T Consensus 12 ~alViDpGS~~traGya-ged~Pk~ilPS~~G~~tk~~~d~~~~~~~y~~-~~ai~~pr~gmEv~~~i~nGlv~dWD~~~ 89 (426)
T KOG0679|consen 12 SALVIDPGSHTTRAGYA-GEDSPKAILPSVYGKVTKTDGDAEDKKGYYVD-ENAIHVPRPGMEVKTPIKNGLVEDWDLFE 89 (426)
T ss_pred ceEEEeCCCceEecccc-CCCCccccccceeeeeecccCccccccceEee-chhccCCCCCCeeccchhcCCcccHHHHH
Confidence 58999999999999999 9999999999999841 1113555 4442 233 7775 899999999999999
Q ss_pred HHHHHHHHhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCCceEEEEEcCCCceEE
Q 020526 70 DLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDI 149 (325)
Q Consensus 70 ~il~~~~~~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVdiG~~~t~v 149 (325)
.+|+|+|.++|+++| .+||++++||++++++.|++++|.+||+|+||+++++.+++|++||.|+.||+|||||+..|+|
T Consensus 90 ~~w~~~~~~~Lk~~p-~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~GrstalVvDiGa~~~sv 168 (426)
T KOG0679|consen 90 MQWRYAYKNQLKVNP-EEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANGRSTALVVDIGATHTSV 168 (426)
T ss_pred HHHHHHHhhhhhcCc-cccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcCCCceEEEEecCCCcee
Confidence 999999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCeeccccceeecCcch--------------------------------------------------hchh-----
Q 020526 150 APVIEGAVQHIASRRFEVGDE--------------------------------------------------LAYE----- 174 (325)
Q Consensus 150 ~pv~~G~~i~~~~~~~~~ge~--------------------------------------------------~~~~----- 174 (325)
+||+||+++.+++.+.++|.+ ..|.
T Consensus 169 sPV~DG~Vlqk~vvks~laGdFl~~~~~q~l~~~~iei~P~y~ia~k~~v~~g~~an~~~~~~~~d~tes~~~y~~~~v~ 248 (426)
T KOG0679|consen 169 SPVHDGYVLQKGVVKSPLAGDFLNDQCRQLLEPKNIEIIPMYNIASKEPVREGYPANAVLRVSIPDLTESYHNYMEQRVY 248 (426)
T ss_pred eeeecceEeeeeeEecccchHHHHHHHHHHHhhcCcccCcHHHhhhcccccccCcchhhhcCChhHHHHHHHHHHHHHHH
Confidence 999999999999999999900 0010
Q ss_pred ---hh--------------cccCCcceEECCCCcEEEecceeeccccccccCCCCC------------CcCCcHHHHHHH
Q 020526 175 ---KT--------------QKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILG------------LEAHGIVEQLVH 225 (325)
Q Consensus 175 ---~~--------------~~~~~~~~~~lpd~~~i~l~~e~~~~~E~lF~p~~~~------------~~~~~i~~~I~~ 225 (325)
++ ..+..++.|++|||.+..++.+||++||.||+|+... ...-|+++++..
T Consensus 249 ~e~ke~v~qv~dtp~de~~~~~i~~~~~efP~g~~~~~G~er~ripe~lF~Ps~v~~~s~~~~~~~~~n~~lG~~~lv~s 328 (426)
T KOG0679|consen 249 QEFKESVLQVSDTPFDEEVAAQIPTKHFEFPDGYTLDFGAERFRIPEYLFKPSLVKSSSKEAGATSHINTMLGLPHLVYS 328 (426)
T ss_pred HHHHHHHHhccCCCCcccccccCCCccccCCCCcccccCcceeecchhhcCcchhccccccccCCCCCccccCchHHHHh
Confidence 00 0112358999999999999999999999999998542 224589999999
Q ss_pred HHHhCChHHHHhccccEEEecCCCCccchHHHHHHhh-ccCCCCcceEEeCCCCCCCCCCCceeeeehhhhhhccCCCCC
Q 020526 226 TISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQN 304 (325)
Q Consensus 226 ~i~~~~~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL-~~~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~l~~~~~ 304 (325)
+|..||+|+|..|+.|||+|||+|+|+||.+||++|| .+.|.+ ++++++... ..+|++++|+||||+|+|++|++
T Consensus 329 Si~~cDvdiR~~L~~nVivtGGtSliqG~s~RL~~ELs~~~P~s-rlki~as~~---t~eR~~~~WlGGSILASLgtFqq 404 (426)
T KOG0679|consen 329 SINMCDVDIRSSLLGNVIVTGGTSLIQGFSERLNKELSKRAPSS-RLKIIASGH---TVERRFQSWLGGSILASLGTFQQ 404 (426)
T ss_pred hhccChHHHHHHhhccEEEecCcchhhhHHHHHHHHHHHhCCcc-eEEEEecCc---eeeehhhhhhhhHHHhccccHHH
Confidence 9999999999999999999999999999999999999 888887 999988766 34699999999999999999999
Q ss_pred eeeeHHHHhhcCc-chhhcccC
Q 020526 305 QHITKADYDESGP-SVVHRKCF 325 (325)
Q Consensus 305 ~~itk~ey~e~G~-~~~~~k~~ 325 (325)
+||+|+||||.|. +.+.|||.
T Consensus 405 ~WiSKqEYEE~G~d~~ve~rc~ 426 (426)
T KOG0679|consen 405 LWISKQEYEEVGKDQLVERRCP 426 (426)
T ss_pred HhhhHHHHHHhhhHHHHhhcCC
Confidence 9999999999998 89999994
No 7
>PTZ00280 Actin-related protein 3; Provisional
Probab=100.00 E-value=8.6e-71 Score=521.77 Aligned_cols=314 Identities=30% Similarity=0.519 Sum_probs=277.2
Q ss_pred CceEEEEcCCCcEEEeeeCCCCCCcEecccceeecCC-------------CcccccCcccccc-Cce-eccccCCeecCH
Q 020526 1 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLE-------------DGSSSVDNSTLVE-DVT-VDPVVRGFIRDW 65 (325)
Q Consensus 1 m~~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~~-------------~~~~g~~~~~~~~-~~~-~~p~~~g~i~d~ 65 (325)
+++||||+||+++|+||| |++.|+.++||.+++... +.++| +++.... .++ .+|+++|.|.||
T Consensus 4 ~~~iViD~GS~~~k~G~a-g~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~vG-~ea~~~~~~~~l~~Pi~~G~I~dw 81 (414)
T PTZ00280 4 LPVVVIDNGTGYTKMGYA-GNTEPTYIIPTLIADNSKQSRRRSKKGFEDLDFYIG-DEALAASKSYTLTYPMKHGIVEDW 81 (414)
T ss_pred CCeEEEECCCCceEeeeC-CCCCCCEEecceeEEeccccccccccccccCCEEEc-chhhhCcCCcEEecCccCCEeCCH
Confidence 368999999999999999 999999999999976321 34678 7765544 455 499999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhc----------CCc
Q 020526 66 DAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAV----------GRI 135 (325)
Q Consensus 66 ~~~~~il~~~~~~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~----------g~~ 135 (325)
|.++.+|+|+|.+.|.+++ .++|+++++|++++...|++++|++||.|++|++++..+++||+|++ |++
T Consensus 82 d~~e~l~~~~~~~~L~~~p-~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~ 160 (414)
T PTZ00280 82 DLMEKFWEQCIFKYLRCEP-EEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTL 160 (414)
T ss_pred HHHHHHHHHHHHHhhccCC-CCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCce
Confidence 9999999999988899999 99999999999999999999999999999999999999999999999 999
Q ss_pred eEEEEEcCCCceEEEEeecCeeccccceeecCcc--------------------------------hhchh-----hhcc
Q 020526 136 SGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGD--------------------------------ELAYE-----KTQK 178 (325)
Q Consensus 136 tglVVdiG~~~t~v~pv~~G~~i~~~~~~~~~ge--------------------------------~~~~~-----~~~~ 178 (325)
||+|||+|++.|+|+||+||+++.++++++++|. +.+|. ++..
T Consensus 161 tglVVDiG~~~T~i~PV~~G~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~ 240 (414)
T PTZ00280 161 TGTVIDSGDGVTHVIPVVDGYVIGSSIKHIPLAGRDITNFIQQMLRERGEPIPAEDILLLAQRIKEKYCYVAPDIAKEFE 240 (414)
T ss_pred eEEEEECCCCceEEEEEECCEEcccceEEecCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCcccCcHHHHHH
Confidence 9999999999999999999999999999999991 12221 1110
Q ss_pred ----c--CCcceEECCC---Cc--EEEecceeeccccccccCCCCCCc-CCcHHHHHHHHHHhCChHHHHhccccEEEec
Q 020526 179 ----S--CEIEQHTLPD---GQ--VIRIGKERYTVGEALFQPSILGLE-AHGIVEQLVHTISTVSSENHRQLLENTVLCG 246 (325)
Q Consensus 179 ----~--~~~~~~~lpd---~~--~i~l~~e~~~~~E~lF~p~~~~~~-~~~i~~~I~~~i~~~~~d~r~~l~~nIil~G 246 (325)
. .....|.+|| |+ .+.++.|||.+||+||+|..++.+ ..+|+++|.++|++||+|+|+.|++||+|+|
T Consensus 241 ~~~~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~G 320 (414)
T PTZ00280 241 KYDSDPKNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSG 320 (414)
T ss_pred HhhcCcccccceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeC
Confidence 1 1235688887 33 789999999999999999987655 4599999999999999999999999999999
Q ss_pred CCCCccchHHHHHHhh-ccC----------------CCCcceEEeCCCCCCCCCCCceeeeehhhhhhccCCCCCeeeeH
Q 020526 247 GTTSMTGFEDRFQKEA-GLC----------------SSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITK 309 (325)
Q Consensus 247 G~s~~~G~~~rl~~eL-~~~----------------~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~l~~~~~~~itk 309 (325)
|+|++|||.+||++|| +++ |.+.+++|..+|+ +.+++|+|||++|++++|+++||||
T Consensus 321 G~s~~~Gf~eRL~~El~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~------~~~~~W~GgSilas~~~f~~~~itk 394 (414)
T PTZ00280 321 GSTMFKGFDKRLQRDVRKRVDRRLKKAEELSGGKLKPIPIDVNVVSHPR------QRYAVWYGGSMLASSPEFEKVCHTK 394 (414)
T ss_pred CcccCcCHHHHHHHHHHHhccccccccccccccccCCCCceEEEecCCc------cceeEEEChhhcccCcchhhheEEH
Confidence 9999999999999999 876 3466888988887 8899999999999999999999999
Q ss_pred HHHhhcCcchhhcc
Q 020526 310 ADYDESGPSVVHRK 323 (325)
Q Consensus 310 ~ey~e~G~~~~~~k 323 (325)
+||+|+|+++++|+
T Consensus 395 ~eY~E~G~~i~~~~ 408 (414)
T PTZ00280 395 AEYDEYGPSICRYN 408 (414)
T ss_pred HHHhccChHheeec
Confidence 99999999999887
No 8
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=100.00 E-value=1.9e-70 Score=517.67 Aligned_cols=316 Identities=35% Similarity=0.670 Sum_probs=273.1
Q ss_pred CceEEEEcCCCcEEEeeeCCCCCCcEecccceeecCC-----CcccccCcccc-ccCce-eccccCCeecCHHHHHHHHH
Q 020526 1 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLE-----DGSSSVDNSTL-VEDVT-VDPVVRGFIRDWDAMEDLLH 73 (325)
Q Consensus 1 m~~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~~-----~~~~g~~~~~~-~~~~~-~~p~~~g~i~d~~~~~~il~ 73 (325)
.++||||+||++||+||| ||+.|+.++|+.+++... +.++| ++... ...+. .+|+++|.+.|||.++.+|+
T Consensus 4 ~~~vViD~Gs~~~k~G~a-ge~~P~~v~ps~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~p~~~g~i~~~~~~e~i~~ 81 (393)
T PF00022_consen 4 NKPVVIDNGSSTIKAGFA-GEDLPRVVIPSVVGRPRDKNSSNDYYVG-DEALSPRSNLELRSPIENGVIVDWDALEEIWD 81 (393)
T ss_dssp SSEEEEEECSSEEEEEET-TSSS-SEEEESEEEEESSSSSSSSCEET-HHHHHTGTGEEEEESEETTEESSHHHHHHHHH
T ss_pred CCEEEEECCCceEEEEEC-CCCCCCCcCCCccccccccccceeEEee-cccccchhheeeeeeccccccccccccccccc
Confidence 478999999999999999 999999999999987533 34677 55322 22444 49999999999999999999
Q ss_pred HHHHhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCCceEEEEEcCCCceEEEEee
Q 020526 74 HVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVI 153 (325)
Q Consensus 74 ~~~~~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVdiG~~~t~v~pv~ 153 (325)
|+|.+.|+.++ +++++++++|+++++..|+++++++||.|++|+++++++++||+|++|.+||+|||+|++.|+|+||+
T Consensus 82 ~~~~~~l~~~~-~~~~vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~tglVVD~G~~~t~v~pV~ 160 (393)
T PF00022_consen 82 YIFSNLLKVDP-SDHPVLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIPSPLLALYASGRTTGLVVDIGYSSTSVVPVV 160 (393)
T ss_dssp HHHHTTT-SSG-GGSEEEEEESTT--HHHHHHHHHHHHHTS--SEEEEEEHHHHHHHHTTBSSEEEEEESSS-EEEEEEE
T ss_pred ccccccccccc-ccceeeeeccccCCchhhhhhhhhhhcccccceeeeeecccccccccccccccccccceeeeeeeeee
Confidence 99998899999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCeeccccceeecCcch-------------------------------hchh-----------h-------h--c-----
Q 020526 154 EGAVQHIASRRFEVGDE-------------------------------LAYE-----------K-------T--Q----- 177 (325)
Q Consensus 154 ~G~~i~~~~~~~~~ge~-------------------------------~~~~-----------~-------~--~----- 177 (325)
||+++.++++++++|.+ ..|. | . .
T Consensus 161 dG~~~~~~~~~~~~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~ 240 (393)
T PF00022_consen 161 DGYVLPHSIKRSPIGGDDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEE 240 (393)
T ss_dssp TTEE-GGGBEEES-SHHHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHH
T ss_pred eccccccccccccccHHHHHHHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhccccccccccc
Confidence 99999999999999911 0110 0 0 0
Q ss_pred --ccCCcceEECCCCcEEEecceeeccccccccCCCCCCcCC-------cHHHHHHHHHHhCChHHHHhccccEEEecCC
Q 020526 178 --KSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAH-------GIVEQLVHTISTVSSENHRQLLENTVLCGGT 248 (325)
Q Consensus 178 --~~~~~~~~~lpd~~~i~l~~e~~~~~E~lF~p~~~~~~~~-------~i~~~I~~~i~~~~~d~r~~l~~nIil~GG~ 248 (325)
.......|.||||+.+.++.+|+.++|+||+|...+.+.. +|+++|.++|++||+|.|+.|++||+|+||+
T Consensus 241 ~~~~~~~~~~~lPdg~~i~~~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~ 320 (393)
T PF00022_consen 241 QASENPEKSYELPDGQTIILGKERFRIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGS 320 (393)
T ss_dssp HHCSTTTEEEE-TTSSEEEESTHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGG
T ss_pred ccccccceecccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEEeccc
Confidence 1223478999999999999999999999999998887765 9999999999999999999999999999999
Q ss_pred CCccchHHHHHHhh-ccCCCCcceEEeCCC-CCCCCCCCceeeeehhhhhhccCCCCCeeeeHHHHhhcCcchhhcccC
Q 020526 249 TSMTGFEDRFQKEA-GLCSSAIRPTLVKPP-EYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF 325 (325)
Q Consensus 249 s~~~G~~~rl~~eL-~~~~~~~~v~v~~~~-~~~~~~~~~~~~W~G~si~a~l~~~~~~~itk~ey~e~G~~~~~~k~~ 325 (325)
|++|||.+||++|| .+.+...+++|..++ + |.+++|+|||++|++.+|+++||||+||+|+|+++++||||
T Consensus 321 S~i~G~~eRL~~eL~~~~~~~~~~~v~~~~~~------~~~~aW~Ggsilasl~~f~~~~itr~eYeE~G~~~i~rkc~ 393 (393)
T PF00022_consen 321 SLIPGFKERLQQELRSLLPSSTKVKVIAPPSD------RQFAAWIGGSILASLSSFQSFWITREEYEEYGPSIIHRKCF 393 (393)
T ss_dssp GGSTTHHHHHHHHHHHHSGTTSTEEEE--T-T------TTSHHHHHHHHHHTSGGGGGTSEEHHHHHHHGGGGHHHHT-
T ss_pred ccccchHHHHHHHhhhhhhccccceeccCchh------hhhcccccceeeeccccccceeeeHHHHhCcCcceeeecCC
Confidence 99999999999999 888888899999988 6 89999999999999999999999999999999999999997
No 9
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=100.00 E-value=1.7e-68 Score=500.95 Aligned_cols=315 Identities=38% Similarity=0.686 Sum_probs=285.7
Q ss_pred ceEEEEcCCCcEEEeeeCCCCCCcEecccceeecCC---------CcccccCcccccc-Cce-eccccCCeecCHHHHHH
Q 020526 2 EAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLE---------DGSSSVDNSTLVE-DVT-VDPVVRGFIRDWDAMED 70 (325)
Q Consensus 2 ~~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~~---------~~~~g~~~~~~~~-~~~-~~p~~~g~i~d~~~~~~ 70 (325)
++||||+||++||+||+ |++.|++++||++++..+ ..++| +++.... ..+ ++|+++|.|.|||.++.
T Consensus 2 ~~iviD~Gs~~~k~G~~-~~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~G-~~a~~~~~~~~~~~P~~~G~i~d~~~~e~ 79 (373)
T smart00268 2 PAIVIDNGSGTIKAGFA-GEDEPQVVFPSIVGRPKDGKGMVGDAKDTFVG-DEAQEKRGGLELKYPIEHGIVENWDDMEK 79 (373)
T ss_pred CeEEEECCCCcEEEeeC-CCCCCcEEccceeeEecccccccCCCcceEec-chhhhcCCCceecCCCcCCEEeCHHHHHH
Confidence 58999999999999999 999999999999876422 24678 7765444 334 49999999999999999
Q ss_pred HHHHHHHhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCCceEEEEEcCCCceEEE
Q 020526 71 LLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIA 150 (325)
Q Consensus 71 il~~~~~~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVdiG~~~t~v~ 150 (325)
+|+++|.+.|++++ +++++++++|.+++...|+++++++||.++++++++++++++|+|++|.++|+|||+|++.|+|+
T Consensus 80 i~~~~~~~~l~~~~-~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~ 158 (373)
T smart00268 80 IWDYTFFNELRVEP-EEHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVLSLYASGRTTGLVIDSGDGVTHVV 158 (373)
T ss_pred HHHHHHhhhcCCCC-ccCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHHHHHhCCCCEEEEEecCCCcceEE
Confidence 99999998899998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCeeccccceeecCcch--------------------------------hch-----hhhc--------ccCCcceE
Q 020526 151 PVIEGAVQHIASRRFEVGDE--------------------------------LAY-----EKTQ--------KSCEIEQH 185 (325)
Q Consensus 151 pv~~G~~i~~~~~~~~~ge~--------------------------------~~~-----~~~~--------~~~~~~~~ 185 (325)
||+||+++.++++++++|.+ .+| .++. .......|
T Consensus 159 pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 238 (373)
T smart00268 159 PVVDGYVLPHAIKRIDIAGRDLTDYLKELLSERGYQFNSSAEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTY 238 (373)
T ss_pred EEECCEEchhhheeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeE
Confidence 99999999999999999911 011 0110 01123689
Q ss_pred ECCCCcEEEecceeeccccccccCCCCCCcCCcHHHHHHHHHHhCChHHHHhccccEEEecCCCCccchHHHHHHhh-cc
Q 020526 186 TLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GL 264 (325)
Q Consensus 186 ~lpd~~~i~l~~e~~~~~E~lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL-~~ 264 (325)
.+|||+.+.++.+|+.++|+||+|...+.+..+|+++|.++|++||+|+|+.|++||+||||+|++|||.+||++|| ++
T Consensus 239 ~lpdg~~~~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~ 318 (373)
T smart00268 239 ELPDGNTIKVGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQL 318 (373)
T ss_pred ECCCCCEEEEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHh
Confidence 99999999999999999999999999998999999999999999999999999999999999999999999999999 99
Q ss_pred CCCCcceEEeCCCCCCCCCCCceeeeehhhhhhccCCCCCeeeeHHHHhhcCcchhhcccC
Q 020526 265 CSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF 325 (325)
Q Consensus 265 ~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~l~~~~~~~itk~ey~e~G~~~~~~k~~ 325 (325)
.|...++++..+++ +.+++|.|||++|++++|++.||||+||+|+|+++++||||
T Consensus 319 ~p~~~~v~v~~~~~------~~~~~W~G~silas~~~f~~~~vtk~eY~E~G~~i~~~k~~ 373 (373)
T smart00268 319 APKKLKVKVIAPPE------RKYSVWLGGSILASLSTFEDMWITKKEYEEHGSQIVERKCF 373 (373)
T ss_pred CCCCceeEEecCCC------CccceEeCcccccCccchhhhEEEHHHHhhhCcceEEeecC
Confidence 99888899988887 88999999999999999999999999999999999999997
No 10
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=100.00 E-value=8.1e-67 Score=439.71 Aligned_cols=313 Identities=33% Similarity=0.590 Sum_probs=282.5
Q ss_pred ceEEEEcCCCcEEEeeeCCCCCCcEecccceeec------------CCCcccccCcccccc-Ccee-ccccCCeecCHHH
Q 020526 2 EAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRV------------LEDGSSSVDNSTLVE-DVTV-DPVVRGFIRDWDA 67 (325)
Q Consensus 2 ~~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~------------~~~~~~g~~~~~~~~-~~~~-~p~~~g~i~d~~~ 67 (325)
++||.|+|+.+.|+||| |++.|.++||+.+++. .++..+| |++...+ -+++ |||++|.+.|||+
T Consensus 5 ~viV~DnGTGfVKcGyA-g~NFP~~~FPs~VGRPilR~~e~~g~~~iKD~mvG-deaselRs~L~i~YPmeNGivrnwdd 82 (389)
T KOG0677|consen 5 NVIVCDNGTGFVKCGYA-GENFPTHIFPSIVGRPILRAEEKVGNIEIKDLMVG-DEASELRSLLDINYPMENGIVRNWDD 82 (389)
T ss_pred CeEEEeCCCceEEeccc-cCCCcccccchhcCchhhhhhhhccCeehhhhecc-chHHHHHHHHhcCCccccccccChHH
Confidence 57999999999999999 9999999999999874 2446678 8876665 3344 9999999999999
Q ss_pred HHHHHHHHHHhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCCceEEEEEcCCCce
Q 020526 68 MEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKI 147 (325)
Q Consensus 68 ~~~il~~~~~~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVdiG~~~t 147 (325)
++.+|+|.|.+.|+++| +++.++++||+++|.++|++|+|.+||++++.++++.-++++++|+.|..||+|||.|.+.|
T Consensus 83 M~h~WDytF~ekl~idp-~~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~tGvVvDSGDGVT 161 (389)
T KOG0677|consen 83 MEHVWDYTFGEKLKIDP-TNCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLLTGVVVDSGDGVT 161 (389)
T ss_pred HHHHHHhhhhhhccCCC-ccCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhcccceEEEecCCCee
Confidence 99999999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCeeccccceeecCc--------------------------------chhchhh-----hc----c-cCCcceE
Q 020526 148 DIAPVIEGAVQHIASRRFEVG--------------------------------DELAYEK-----TQ----K-SCEIEQH 185 (325)
Q Consensus 148 ~v~pv~~G~~i~~~~~~~~~g--------------------------------e~~~~~~-----~~----~-~~~~~~~ 185 (325)
+|+||++|+.+++-.++++++ |++||.. +. + ..-..+|
T Consensus 162 Hi~PVye~~~l~HLtrRldvAGRdiTryLi~LLl~rGYafN~tADFETVR~iKEKLCYisYd~e~e~kLalETTvLv~~Y 241 (389)
T KOG0677|consen 162 HIVPVYEGFVLPHLTRRLDVAGRDITRYLIKLLLRRGYAFNHTADFETVREIKEKLCYISYDLELEQKLALETTVLVESY 241 (389)
T ss_pred EEeeeecceehhhhhhhccccchhHHHHHHHHHHhhccccccccchHHHHHHHhhheeEeechhhhhHhhhhheeeeeee
Confidence 999999999999999999998 3345421 10 1 1123799
Q ss_pred ECCCCcEEEecceeeccccccccCCCCCCcCCcHHHHHHHHHHhCChHHHHhccccEEEecCCCCccchHHHHHHhh-cc
Q 020526 186 TLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GL 264 (325)
Q Consensus 186 ~lpd~~~i~l~~e~~~~~E~lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL-~~ 264 (325)
+||||..|.++.|||.+||+||+|.+++.+.+++.+++.++|+..|+|.|..++++|+|+||+++.||+..||++|| ++
T Consensus 242 tLPDGRvIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkElkql 321 (389)
T KOG0677|consen 242 TLPDGRVIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKELKQL 321 (389)
T ss_pred ecCCCcEEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 75
Q ss_pred CC-----------CCcceEEeCCCCCCCCCCCceeeeehhhhhhcc-CCCCCeeeeHHHHhhcCcchhhcc
Q 020526 265 CS-----------SAIRPTLVKPPEYMPENLTLYSAWIGGAILAKV-VFPQNQHITKADYDESGPSVVHRK 323 (325)
Q Consensus 265 ~~-----------~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~l-~~~~~~~itk~ey~e~G~~~~~~k 323 (325)
.- ..+++++-.+|. +++-.++||+.+|++ .--+++|+||+||.|.|.+++.+.
T Consensus 322 yl~rVL~~d~~~l~KfkiRIEdPPr------RKhMVflGGAVLA~imkD~d~fW~skqeyqE~G~~~l~k~ 386 (389)
T KOG0677|consen 322 YLDRVLKGDTDKLKKFKIRIEDPPR------RKHMVFLGGAVLAGIMKDKDEFWMSKQEYQEEGINVLNKL 386 (389)
T ss_pred HHHHHHcCChhhhhheEEeccCCCc------cceeEEEchHHHHHHhcCCccceecHHHHHhhhHHHHHhh
Confidence 31 246888999998 899999999999995 555789999999999999988764
No 11
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=100.00 E-value=2.8e-65 Score=478.77 Aligned_cols=312 Identities=40% Similarity=0.680 Sum_probs=279.8
Q ss_pred eEEEEcCCCcEEEeeeCCCCCCcEecccceeecC----------CCcccccCccccccC--ce-eccccCCeecCHHHHH
Q 020526 3 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVL----------EDGSSSVDNSTLVED--VT-VDPVVRGFIRDWDAME 69 (325)
Q Consensus 3 ~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~----------~~~~~g~~~~~~~~~--~~-~~p~~~g~i~d~~~~~ 69 (325)
+||||+||+++|+||+ |++.|++++||++++.. ....+| +++....+ +. ++|+++|.+.||+.++
T Consensus 1 ~iViD~Gs~~~r~G~a-~~~~p~~~~ps~v~~~~~~~~~~~~~~~~~~~G-~~a~~~~~~~~~~~~P~~~G~i~d~~~~e 78 (371)
T cd00012 1 AVVIDNGSGTIKAGFA-GEDAPRVVFPSCVGRPKHQSVMVGAGDKDYFVG-EEALEKRGLGLELIYPIEHGIVVDWDDME 78 (371)
T ss_pred CEEEECCCCeEEEEeC-CCCCCceEeeccceeecCcccccccCCCceEEc-hhhhhCCCCceEEcccccCCEEeCHHHHH
Confidence 6999999999999999 99999999999997642 235678 77755543 55 4999999999999999
Q ss_pred HHHHHHHHhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCCceEEEEEcCCCceEE
Q 020526 70 DLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDI 149 (325)
Q Consensus 70 ~il~~~~~~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVdiG~~~t~v 149 (325)
.+|+++|.+.+..++ +++++++++|+++++..|+++++++||.++++++++++++++|+|++|.++|+|||+|++.|+|
T Consensus 79 ~~~~~~~~~~l~~~~-~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~i 157 (371)
T cd00012 79 KIWDHLFFNELKVNP-EEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASGRTTGLVVDSGDGVTHV 157 (371)
T ss_pred HHHHHHHHHhcCCCC-CCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcCCCeEEEEECCCCeeEE
Confidence 999999998888888 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCeeccccceeecCcch--------------------------------hch-----hhhc----c--cCCcceEE
Q 020526 150 APVIEGAVQHIASRRFEVGDE--------------------------------LAY-----EKTQ----K--SCEIEQHT 186 (325)
Q Consensus 150 ~pv~~G~~i~~~~~~~~~ge~--------------------------------~~~-----~~~~----~--~~~~~~~~ 186 (325)
+||+||+++.+++.++++|.+ .+| .++. . ......|.
T Consensus 158 ~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 237 (371)
T cd00012 158 VPVYDGYVLPHAIKRLDLAGRDLTRYLKELLRERGYELNSSDEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYE 237 (371)
T ss_pred EEEECCEEchhhheeccccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEE
Confidence 999999999999999999921 111 0110 0 11236799
Q ss_pred CCCCcEEEecceeeccccccccCCCCCCcCCcHHHHHHHHHHhCChHHHHhccccEEEecCCCCccchHHHHHHhh-ccC
Q 020526 187 LPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLC 265 (325)
Q Consensus 187 lpd~~~i~l~~e~~~~~E~lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL-~~~ 265 (325)
+||++.+.++.||+.++|+||+|...+....+|+++|.++|+.||+|.|+.+++||+|+||+|++|||.+||++|| .+.
T Consensus 238 lpd~~~i~~~~er~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~ 317 (371)
T cd00012 238 LPDGRTIKVGNERFRAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLA 317 (371)
T ss_pred CCCCeEEEEChHHhhChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhC
Confidence 9999999999999999999999998888899999999999999999999999999999999999999999999999 888
Q ss_pred CC--CcceEEeCCCCCCCCCCCceeeeehhhhhhccCCCCCeeeeHHHHhhcCcchhhcc
Q 020526 266 SS--AIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRK 323 (325)
Q Consensus 266 ~~--~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~l~~~~~~~itk~ey~e~G~~~~~~k 323 (325)
|. ...+++...++ |.+++|.|||++|++++|++.||||+||+|+|+++++||
T Consensus 318 ~~~~~~~~~~~~~~~------~~~~aw~G~si~as~~~~~~~~itk~eY~E~G~~~~~~k 371 (371)
T cd00012 318 PPSKDTKVKVIAPPE------RKYSVWLGGSILASLSTFQQLWITKEEYEEHGPSIVHRK 371 (371)
T ss_pred CcccceEEEEccCCC------ccccEEeCchhhcCchhhhheEeeHHHHhhhCchhEecC
Confidence 76 55667776666 899999999999999999999999999999999999987
No 12
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=3.6e-63 Score=465.11 Aligned_cols=314 Identities=35% Similarity=0.619 Sum_probs=283.8
Q ss_pred eEEEEcCCCcEEEeeeCCCCCCcEecccceeec-----------CCCcccccCccccccC---ce-eccccCCeecCHHH
Q 020526 3 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRV-----------LEDGSSSVDNSTLVED---VT-VDPVVRGFIRDWDA 67 (325)
Q Consensus 3 ~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~-----------~~~~~~g~~~~~~~~~---~~-~~p~~~g~i~d~~~ 67 (325)
+||||+||+.+|+||+ |++.|++++|+.+.+. .++.++| +++....+ .+ ++|+++|.|.||++
T Consensus 8 ~iVIDnGS~~~k~Gfa-g~~~P~~V~ps~~~~~~~~~~~~~~~~~~~~~v~-ne~~~~~~~~~~~~~~p~~~g~i~~W~~ 85 (444)
T COG5277 8 TIVIDNGSGTTKAGFA-GNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVG-NEAQNDRDNSLLELRYPIENGIILNWDA 85 (444)
T ss_pred eEEEeCCCceEEeeec-CCCCceeecccccccccccccccccccccccccC-chhhhccCCccceeecccccCccCCcHH
Confidence 4999999999999999 9999999999999876 3456788 77765553 33 59999999999999
Q ss_pred HHHHHHHHHHh--ccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCCc--eEEEEEcC
Q 020526 68 MEDLLHHVLYA--GLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRI--SGCTVDIG 143 (325)
Q Consensus 68 ~~~il~~~~~~--~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~--tglVVdiG 143 (325)
++++|+|+|.+ .+...+ .+||+++++|++++.+.|+++++++||++++|++++..+++|++|+.|.. +|+|||+|
T Consensus 86 ~e~~w~~~~~~~~~~~~~~-~~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~~~g~ViD~G 164 (444)
T COG5277 86 MEQIWDYTFFNKGDLLPSP-EEHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGSSDETGLVIDSG 164 (444)
T ss_pred HHHHHHHhhcchhhccCCC-cCCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCCCCceEEEEcC
Confidence 99999999998 577777 99999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCceEEEEeecCeeccccceeecCcch----------------------------------------hc-------hhh-
Q 020526 144 HGKIDIAPVIEGAVQHIASRRFEVGDE----------------------------------------LA-------YEK- 175 (325)
Q Consensus 144 ~~~t~v~pv~~G~~i~~~~~~~~~ge~----------------------------------------~~-------~~~- 175 (325)
++.|+|+||+||.++.++++++++|.+ .+ |..
T Consensus 165 ~~~t~v~PV~DG~~l~~a~~ri~~gG~~it~~l~~lL~~~~~~~~~~~l~~e~~~~~~ei~~~ik~e~~~~~~~~~y~~~ 244 (444)
T COG5277 165 DSVTHVIPVVDGIVLPKAVKRIDIGGRDITDYLKKLLREKYPPSRGYNLKSELVEYSSEIVNEIKEEVCETDDESAYVSL 244 (444)
T ss_pred CCceeeEeeeccccccccceeeecCcHHHHHHHHHHHhhcccccCCcccccccccccHHHHHHHHHhhccccccccchhh
Confidence 999999999999999999999999911 11 210
Q ss_pred --------hcc-----------------cCCcceEECCCCcEEEecce-eeccccccccCC--CCCCcCCc---------
Q 020526 176 --------TQK-----------------SCEIEQHTLPDGQVIRIGKE-RYTVGEALFQPS--ILGLEAHG--------- 218 (325)
Q Consensus 176 --------~~~-----------------~~~~~~~~lpd~~~i~l~~e-~~~~~E~lF~p~--~~~~~~~~--------- 218 (325)
..+ ......+.+|+++.+.++.+ ||.+||.+|+|. ..+.+..+
T Consensus 245 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~e~rf~~pE~lF~pe~~~~~l~~~~~~~~~~~~~ 324 (444)
T COG5277 245 DAEEEFEEEEEKPAEKSTESTFQLSKETSIAKESKELPDGEEIEFGNEERFKAPEILFKPELPISGLEEAGKIDESKQEL 324 (444)
T ss_pred cchHHHHHHhhhhhhhcccccccccchhccccccccCCCCceEeechhhhhhcchhhcCCccccccccccccchhhhhhh
Confidence 000 01125678999999999999 999999999999 77766666
Q ss_pred ------------------HHHHHHHHHHhCChHHHHhccccEEEecCCCCccchHHHHHHhh-ccCCCCcceEEeCCCCC
Q 020526 219 ------------------IVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLCSSAIRPTLVKPPEY 279 (325)
Q Consensus 219 ------------------i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL-~~~~~~~~v~v~~~~~~ 279 (325)
|++++.++|..||.+.|+.|++||+|+||++++|||.+||++|| .+.|....++|+.+++
T Consensus 325 ~~~~~~~~~~~~~~~~~gl~e~v~~si~~~~~~~r~~l~~nivitGGts~~pg~~~Rl~~el~~~~p~~~~v~v~~~~~- 403 (444)
T COG5277 325 VAENYEISPTNLGNDIAGLPELVYQSIQICDEDVRKSLYSNIVLTGGTSKIPGFAERLQKELTSLAPSIWKVSVIPPPD- 403 (444)
T ss_pred hhhccccccccccccccchHHHHHHHHHhccHHHHHHHhhCEEEecCccCCCCHHHHHHHHHHhhcCCCCceeeecCCc-
Confidence 99999999999999999999999999999999999999999999 9999989999999998
Q ss_pred CCCCCCceeeeehhhhhhccCCCCCeeeeHHHHhhcCcchhhcccC
Q 020526 280 MPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF 325 (325)
Q Consensus 280 ~~~~~~~~~~W~G~si~a~l~~~~~~~itk~ey~e~G~~~~~~k~~ 325 (325)
|.+.+|+|||++|++.+|++.||||+||+|+|++++++|||
T Consensus 404 -----~~~~~W~GaSila~~~~~~~~~itk~eY~e~G~~~~~~~~~ 444 (444)
T COG5277 404 -----PSLDAWLGASILASLETFQQLWITKEEYEEHGPDILQEKRF 444 (444)
T ss_pred -----hhhccccchhhhccccchhheEeeHHHhhhhhhHHHhhccC
Confidence 99999999999999999999999999999999999999986
No 13
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=100.00 E-value=3.4e-61 Score=416.11 Aligned_cols=315 Identities=26% Similarity=0.473 Sum_probs=275.4
Q ss_pred CceEEEEcCCCcEEEeeeCCCCCCcEecccceeecC---CCcccccCccccccCce----eccccCCeecCHHHHHHHHH
Q 020526 1 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVL---EDGSSSVDNSTLVEDVT----VDPVVRGFIRDWDAMEDLLH 73 (325)
Q Consensus 1 m~~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~---~~~~~g~~~~~~~~~~~----~~p~~~g~i~d~~~~~~il~ 73 (325)
|++||+|+|++++|+|++ +...|. ++|++..+.+ ++.++| ++....+|.. ++|+++|.+++|+....+|+
T Consensus 3 ~~tiVlDNGay~~KiG~s-~~~~p~-~vpNcl~kaK~~~rr~f~~-nei~ec~D~ssL~y~rp~erGyLvnW~tq~~vWD 79 (400)
T KOG0680|consen 3 TTTIVLDNGAYNIKIGPS-TNKKPF-VVPNCLAKAKFGRRRSFLA-NEIDECKDISSLFYRRPHERGYLVNWDTQSQVWD 79 (400)
T ss_pred CceEEEcCCceeEEeccC-CCCCce-eccchhhhcccccchhhhh-hhhhhccCccceEEeehhhcceeEeehhHHHHHH
Confidence 578999999999999999 787785 5677776542 237888 8877666554 58999999999999999999
Q ss_pred HHHHhcc-CCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhc---C--------CceEEEEE
Q 020526 74 HVLYAGL-GWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAV---G--------RISGCTVD 141 (325)
Q Consensus 74 ~~~~~~l-~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~---g--------~~tglVVd 141 (325)
++|.+.- .++. +++++++++|.++-++..+...|++||+|++.++.-...+.++++-. + ...++|||
T Consensus 80 y~f~~~~~~~~~-~~~~ivlTep~~~~psi~~~t~eilFEey~fd~v~kttaa~lva~~~~~~~ne~~tt~~~~c~lVID 158 (400)
T KOG0680|consen 80 YCFGNPGFDVEG-KDHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAVLKTTAAVLVAFTKYVRNNEDSTTTSSECCLVID 158 (400)
T ss_pred HHhcCCCcCccc-CcceEEEecccccccchhhhHHHHHHHHhccceEeecCHHHhcchhhhccCCccccccccceEEEEe
Confidence 9998643 3444 89999999999999999999999999999999999999999988862 1 23789999
Q ss_pred cCCCceEEEEeecCeeccccceeecCcch------------------------------hchh-----hhc--------c
Q 020526 142 IGHGKIDIAPVIEGAVQHIASRRFEVGDE------------------------------LAYE-----KTQ--------K 178 (325)
Q Consensus 142 iG~~~t~v~pv~~G~~i~~~~~~~~~ge~------------------------------~~~~-----~~~--------~ 178 (325)
.|++.|+|+|+.+|.++.++++++++|.+ .||. +.+ +
T Consensus 159 sGysfThIip~v~g~~~~qaV~RiDvGGK~LTn~LKE~iSyR~lNvmdET~vVNeiKEdvcfVSqnF~~~m~~~~~k~~~ 238 (400)
T KOG0680|consen 159 SGYSFTHIIPVVKGIPYYQAVKRIDVGGKALTNLLKETISYRHLNVMDETYVVNEIKEDVCFVSQNFKEDMDIAKTKFQE 238 (400)
T ss_pred CCCceEEEehhhcCcchhhceEEeecchHHHHHHHHHHhhhhhhcccchhhhhhhhhhheEEechhhHHHHHHHhhcccc
Confidence 99999999999999999999999999922 2221 111 1
Q ss_pred cCCcceEECCC-------------------CcEEEecceeeccccccccCCCCCCcCCcHHHHHHHHHHhCChHHHHhcc
Q 020526 179 SCEIEQHTLPD-------------------GQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLL 239 (325)
Q Consensus 179 ~~~~~~~~lpd-------------------~~~i~l~~e~~~~~E~lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r~~l~ 239 (325)
+.....|.||| .+.++|.+|||.+||+||+|++.++.++||+++|+++|+.||..+|+.|+
T Consensus 239 ~~~~i~YvLPDF~T~k~Gyvr~~~vk~~~d~qii~L~nErF~IPEilF~Psdi~I~q~GIpEAV~esl~~~Pe~~~p~l~ 318 (400)
T KOG0680|consen 239 NKVMIDYVLPDFSTSKRGYVRNEDVKLPEDEQIITLTNERFTIPEILFSPSDIGIQQPGIPEAVLESLSMLPEEVRPLLL 318 (400)
T ss_pred ceeEEEEecCCcccccceeEecCCCCCCCCcceeeecccccccchhhcChhhcCcccCCchHHHHHHHHhCHHHHHHHHH
Confidence 11125666665 46788999999999999999999999999999999999999999999999
Q ss_pred ccEEEecCCCCccchHHHHHHhh-ccCCCCcceEEeCCCCCCCCCCCceeeeehhhhhhccCCCCCeeeeHHHHhhcCcc
Q 020526 240 ENTVLCGGTTSMTGFEDRFQKEA-GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPS 318 (325)
Q Consensus 240 ~nIil~GG~s~~~G~~~rl~~eL-~~~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~l~~~~~~~itk~ey~e~G~~ 318 (325)
.||+++||++++|||.+||..|| +++|.++.++|+.+.+ |..-+|.||+-++.++.|...||||+||+|+|++
T Consensus 319 ~NIv~iGGn~~fPgF~~RL~~Elr~l~P~d~~v~V~~p~d------p~~~~W~~g~~~~~~~~~~~~~itR~dy~E~G~~ 392 (400)
T KOG0680|consen 319 ENIVCIGGNSNFPGFRQRLARELRSLLPADWEVSVSVPED------PITFAWEGGSEFAKTDSFEKAVITREDYEEHGPS 392 (400)
T ss_pred hcEEEecCccCCcchHHHHHHHHHhhCCccceEEEecCCC------cceeeehhccccccCcchhcceecHhhHhhcCch
Confidence 99999999999999999999999 9999999999998877 8999999999999999999999999999999999
Q ss_pred hhhcccC
Q 020526 319 VVHRKCF 325 (325)
Q Consensus 319 ~~~~k~~ 325 (325)
++.+|+|
T Consensus 393 ~~~~~~~ 399 (400)
T KOG0680|consen 393 WCTKKRF 399 (400)
T ss_pred hhhhhcc
Confidence 9999986
No 14
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=100.00 E-value=2e-51 Score=355.99 Aligned_cols=311 Identities=28% Similarity=0.429 Sum_probs=262.3
Q ss_pred eEEEEcCCCcEEEeeeCCCCCCcEecccceeec------------------CCCcccccCccccccCcee-ccccCCeec
Q 020526 3 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRV------------------LEDGSSSVDNSTLVEDVTV-DPVVRGFIR 63 (325)
Q Consensus 3 ~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~------------------~~~~~~g~~~~~~~~~~~~-~p~~~g~i~ 63 (325)
++|+|+|+.++|.||+ |...|++++|++++.. ..+.++| |++.+.-.+++ ||+++|.+.
T Consensus 6 p~V~d~Gtgytklg~a-gn~~p~~i~p~~ia~~~~~~~s~~~~~~~~~~~~dldf~ig-~eal~~~~ysl~ypiRhg~ve 83 (415)
T KOG0678|consen 6 PCVIDNGTGYTKLGYA-GNTEPQFIIPTAIAVKESAAVSSKATRRVKRGTEDLDFFIG-DEALDATTYSLKYPIRHGQVE 83 (415)
T ss_pred ceeeccCcceeeeecc-ccCCcccccceeEEeccccccccchhhhhhccccccceecc-cHHHhhcccccccceeccccc
Confidence 4899999999999999 9999999999998652 1236778 88766335555 999999999
Q ss_pred CHHHHHHHHHHHHHhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcC--------Cc
Q 020526 64 DWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVG--------RI 135 (325)
Q Consensus 64 d~~~~~~il~~~~~~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g--------~~ 135 (325)
|||.++++|...+.++|...| .+|..++++|+++++++|+..++++||.|||+.+++.-++++|+.++- .-
T Consensus 84 ~wd~mer~~~q~ifkylr~eP-edh~fLlteppln~penreytaeImfEsfnvpglyiAVqavLALaaswts~~v~er~l 162 (415)
T KOG0678|consen 84 DWDLMERFWEQCIFKYLRAEP-EDHYFLLTEPPLNQPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERFL 162 (415)
T ss_pred cHHHHHHHHhhhhhhhhcCCc-ccceEEecCCCCCCchhhHHHHHhhhhhccCchHHHHHHHHHHHHHHHHHhhhhhhee
Confidence 999999999999999999999 999999999999999999999999999999999999999999988763 35
Q ss_pred eEEEEEcCCCceEEEEeecCeeccccceeecCcch--------------------------------hch-----hhhc-
Q 020526 136 SGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGDE--------------------------------LAY-----EKTQ- 177 (325)
Q Consensus 136 tglVVdiG~~~t~v~pv~~G~~i~~~~~~~~~ge~--------------------------------~~~-----~~~~- 177 (325)
||+|||.|.+.|+|.||.+||++-+++++++++.+ .|| .++.
T Consensus 163 tG~VidsGdgvThvipvaEgyVigScik~iPiagrdiT~fiQ~llRer~~~iP~e~sl~tak~iKe~ycy~cPdivkef~ 242 (415)
T KOG0678|consen 163 TGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLREREVGIPPEQSLETAKAIKEKYCYTCPDIVKEFA 242 (415)
T ss_pred eeEEEecCCCeeEEEEeecceEEeeeeccccccCCchhHHHHHHhhCCCCCCChHHhhhhhHHHHhhhcccCcHHHHHHH
Confidence 99999999999999999999999999999999821 111 0110
Q ss_pred ---ccCC--cceEE---CCC--CcEEEecceeeccccccccCCCCCCc-CCcHHHHHHHHHHhCChHHHHhccccEEEec
Q 020526 178 ---KSCE--IEQHT---LPD--GQVIRIGKERYTVGEALFQPSILGLE-AHGIVEQLVHTISTVSSENHRQLLENTVLCG 246 (325)
Q Consensus 178 ---~~~~--~~~~~---lpd--~~~i~l~~e~~~~~E~lF~p~~~~~~-~~~i~~~I~~~i~~~~~d~r~~l~~nIil~G 246 (325)
..+. .++|. .-. ...++++-|||..||++|+|.....+ -..|++++...|++||+|+|+.||+||++.|
T Consensus 243 k~d~ep~K~ikq~~~~~~i~~~~~~vDvgyerFlgpEiff~Pe~a~~d~~~~~~~~vd~~Iq~~pIdvrr~ly~nivlsg 322 (415)
T KOG0678|consen 243 KYDREPAKWIKQYTGINVITGKKFVVDVGYERFLGPEIFFHPEFANPDFLTPLSEVVDWVIQHCPIDVRRPLYKNIVLSG 322 (415)
T ss_pred HhccCHHHHHHHHhccchhcCCceeecccHHhhcChhhhcCccccCCccCcchHHHhhhhhhhCCcccchhhhhHHhhcc
Confidence 0000 01111 111 23466788999999999999977654 4689999999999999999999999999999
Q ss_pred CCCCccchHHHHHHhh-ccCC--------------CCcceEEeCCCCCCCCCCCceeeeehhhhhhccCCCCCeeeeHHH
Q 020526 247 GTTSMTGFEDRFQKEA-GLCS--------------SAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKAD 311 (325)
Q Consensus 247 G~s~~~G~~~rl~~eL-~~~~--------------~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~l~~~~~~~itk~e 311 (325)
|.+++++|..|+++++ .+.. ..+.++++.+.. .++++|.|||++++.+.|...+-||++
T Consensus 323 gst~fk~fgr~lqrD~kr~vd~rl~~s~~lsg~k~~~vdvqvish~~------qr~avwfggs~lastpef~~~~~tk~~ 396 (415)
T KOG0678|consen 323 GSTMFKDFGRRLQRDLKRLVDTRLAESEGLSGIKSKPVDVQVLSHLL------QRTAVWFGGSKLASTPEFVPACHTKED 396 (415)
T ss_pred chHHHHHhhhhccHHHHHHHHHHHHHhcccccCCCCCceeehhhhhh------hhcceeccCccccCCcccccccCcchh
Confidence 9999999999999998 6432 224567777766 789999999999999999999999999
Q ss_pred HhhcCcchhhc
Q 020526 312 YDESGPSVVHR 322 (325)
Q Consensus 312 y~e~G~~~~~~ 322 (325)
|+|+|+++++.
T Consensus 397 yee~g~si~r~ 407 (415)
T KOG0678|consen 397 YEEYGPSICRT 407 (415)
T ss_pred hhhhChhhhhc
Confidence 99999999875
No 15
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=100.00 E-value=8e-49 Score=359.26 Aligned_cols=314 Identities=25% Similarity=0.482 Sum_probs=265.0
Q ss_pred ceEEEEcCCCcEEEeeeCCCCCCcEecccceeecCCC------cccccCcccccc---CceeccccCCeecCHHHHHHHH
Q 020526 2 EAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLED------GSSSVDNSTLVE---DVTVDPVVRGFIRDWDAMEDLL 72 (325)
Q Consensus 2 ~~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~~~------~~~g~~~~~~~~---~~~~~p~~~g~i~d~~~~~~il 72 (325)
.|||||+||+.+|+||+ |+..|+.+|++++.+..++ ..+| +.....+ ...+.|+++.+|+||+.+|.++
T Consensus 24 ~piVIDNGS~~~RaGw~-ge~eP~lvFrNvl~r~Rdrk~~~s~t~vg-nd~~~~~~~Rs~~rSPFd~nVvtNwel~E~il 101 (645)
T KOG0681|consen 24 IPIVIDNGSYECRAGWA-GEKEPRLVFRNVLTRPRDRKLGASVTLVG-NDILNFQGVRSSPRSPFDRNVVTNWELMEQIL 101 (645)
T ss_pred CcEEEeCCceeEeeccc-CCCCccchhhhhhcccccccccccccccc-chhhhhhhhhccCCCCCcCCccccHHHHHHHH
Confidence 47999999999999999 9999999999999764321 2456 4443333 2236899999999999999999
Q ss_pred HHHHHhccCCCC-CCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhh-cC---CceEEEEEcCCCce
Q 020526 73 HHVLYAGLGWEE-GNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYA-VG---RISGCTVDIGHGKI 147 (325)
Q Consensus 73 ~~~~~~~l~~~~-~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~-~g---~~tglVVdiG~~~t 147 (325)
+|+|. +|+++. +-+||+++||..++|...|..|.++|||.+|+|+|.+--+++.+++. .+ ..+|+||++|++.|
T Consensus 102 DY~F~-~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS~~hN~~~~~~~~~liis~g~~~T 180 (645)
T KOG0681|consen 102 DYIFG-KLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFSFYHNYGKSSNKSGLIISMGHSAT 180 (645)
T ss_pred HHHHH-hcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHHHhhccCcccCcceEEEecCCCcc
Confidence 99996 588875 45899999999999999999999999999999999999999999994 23 34799999999999
Q ss_pred EEEEeecCeeccccceeecCc-----------------------------------------------------------
Q 020526 148 DIAPVIEGAVQHIASRRFEVG----------------------------------------------------------- 168 (325)
Q Consensus 148 ~v~pv~~G~~i~~~~~~~~~g----------------------------------------------------------- 168 (325)
+|.||.||..+...++++++|
T Consensus 181 ~vipvldG~~il~~~kRiN~GG~qa~dYL~~Lmq~Kyp~~~~~~t~sk~E~l~~eHcyis~DY~eei~~~l~~d~~d~~~ 260 (645)
T KOG0681|consen 181 HVIPVLDGRLILKDVKRINWGGYQAGDYLSRLMQLKYPFHLNAFTGSKAERLLHEHCYISPDYREEIIKILEMDYYDENR 260 (645)
T ss_pred eeEEEecCchhhhcceeeccCcchHHHHHHHHHhccCccchhhcCHHHHHHHhhhhceeCcchHHHHHHHhhhhhhhccc
Confidence 999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q 020526 169 -------------------------------------------------------------------------------- 168 (325)
Q Consensus 169 -------------------------------------------------------------------------------- 168 (325)
T Consensus 261 ~~~qlP~~evl~~~e~~l~Ae~kqekRlq~~a~lkrv~k~~~re~~redeqql~~~~kaq~e~e~~~D~~q~~~ll~v~~ 340 (645)
T KOG0681|consen 261 NYFQLPYTEVLAEVELALTAEKKQEKRLQEQAALKRVEKINARENRREDEQQLESYNKAQGEQESNLDLEQKFPLLNVPA 340 (645)
T ss_pred eEEecccccccchhhhhccHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHhhhchhcCccHhhhchhhcchh
Confidence
Q ss_pred --------------------------------ch------------hch-------------------------------
Q 020526 169 --------------------------------DE------------LAY------------------------------- 173 (325)
Q Consensus 169 --------------------------------e~------------~~~------------------------------- 173 (325)
|+ ..|
T Consensus 341 eL~~d~lk~k~~qr~lkas~dar~rar~eke~Er~~k~~~~r~~~~~swl~e~r~k~~~ller~~~kk~lk~e~~~r~s~ 420 (645)
T KOG0681|consen 341 ELDEDQLKEKKKQRILKASTDARLRARVEKELERLNKLEEEREENLISWLEELREKLEKLLERISQKKRLKQELKDRKSH 420 (645)
T ss_pred hhCHHHHHHHHHHHHHHhhhhhhccccccchHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 00 000
Q ss_pred ----------------------------------------hhhcccC-----------------C--cceEE--------
Q 020526 174 ----------------------------------------EKTQKSC-----------------E--IEQHT-------- 186 (325)
Q Consensus 174 ----------------------------------------~~~~~~~-----------------~--~~~~~-------- 186 (325)
+...+.. . ...+.
T Consensus 421 ~Sq~rmr~~~~La~~~~~rrk~~~~t~D~fg~~Dedw~vYe~lee~~~~~~~dl~~l~~~L~e~Dp~F~~~~~~~~d~~~ 500 (645)
T KOG0681|consen 421 ASQLRMRALARLAYEQVVRRKRKEATPDNFGARDEDWDVYEDLEEENKSILEDLKSLNHELLEFDPHFTQYVEGTTDPRN 500 (645)
T ss_pred hhHhhhHHHHhhhHHHHHHHhcccCCccccccchhhHHHHHHhhhhhhhHHHHHHHHHHHHHhhCcccccccccccCccc
Confidence 0000000 0 00000
Q ss_pred --CC----CCcEEEecceeeccccccccCCCCCCcCCcHHHHHHHHHHhCChHHHHhccccEEEecCCCCccchHHHHHH
Q 020526 187 --LP----DGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQK 260 (325)
Q Consensus 187 --lp----d~~~i~l~~e~~~~~E~lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s~~~G~~~rl~~ 260 (325)
+| ....+.++.|++.+||++|+|+++|.++.||.+++..++.+.|-|.+..|.+||+||||.|++||+.+||..
T Consensus 501 ~~~p~~~~e~~qlh~nVEriRvPEIiFqPsiiG~dQaGl~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~k 580 (645)
T KOG0681|consen 501 GVLPGFTAEDYQLHLNVERIRVPEIIFQPSIIGIDQAGLAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKK 580 (645)
T ss_pred CcchhHHHhhhhhhhcceeeccceeeeccccccchhhhHHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHH
Confidence 00 012345789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hh-ccCCCCcceEEeCCCCCCCCCCCceeeeehhhhhhccCCCCCeeeeHHHHhhcCcchhhccc
Q 020526 261 EA-GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKC 324 (325)
Q Consensus 261 eL-~~~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~l~~~~~~~itk~ey~e~G~~~~~~k~ 324 (325)
|| .+.|-..+++|....+ |.+.+|.||+.+|.-.+|...|+||+||+|+|+.+++..+
T Consensus 581 Elt~mrP~gS~i~V~rasd------P~LDAW~GA~~~a~n~~f~~~~~Tr~dy~E~G~e~~kEh~ 639 (645)
T KOG0681|consen 581 ELTSMRPVGSSINVVRASD------PVLDAWRGASAWAANPTFTLTQITRKDYEEKGEEYLKEHV 639 (645)
T ss_pred HhheecccCCceEEEecCC------cchhhhhhhHHhhcCcccchhhhhHHhhhhhhHHHHHHHh
Confidence 99 9999988999998888 9999999999999999999999999999999999887654
No 16
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=100.00 E-value=2.2e-32 Score=249.77 Aligned_cols=268 Identities=19% Similarity=0.335 Sum_probs=202.7
Q ss_pred ccccCCeecC----------HHHHHHHHHHHHHhccCCCC--CCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEe
Q 020526 55 DPVVRGFIRD----------WDAMEDLLHHVLYAGLGWEE--GNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSS 122 (325)
Q Consensus 55 ~p~~~g~i~d----------~~~~~~il~~~~~~~l~~~~--~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~ 122 (325)
+|+++|...- .+++++||+|++.+.|++.+ ..++.+|++.|....+...+.+..++|-+|+|.++.++
T Consensus 183 ~Pir~G~fNv~~~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~ 262 (618)
T KOG0797|consen 183 HPIRRGHFNVSPPYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVH 262 (618)
T ss_pred cccccceeccCCcchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEE
Confidence 8999998753 45789999999999898876 46899999999999999999999999999999999999
Q ss_pred chhhhhhhhcCCceEEEEEcCCCceEEEEeecCeeccccceeecCcch-------------------------hc-----
Q 020526 123 EQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGDE-------------------------LA----- 172 (325)
Q Consensus 123 ~~~~~a~~~~g~~tglVVdiG~~~t~v~pv~~G~~i~~~~~~~~~ge~-------------------------~~----- 172 (325)
.++++|+|++|.+++||||||+..|+|+||-||..++++...+++|.. .+
T Consensus 263 QESlaatfGaGlss~CVVdiGAQkTsIaCVEdGvs~~ntri~L~YGGdDitr~f~~ll~rs~FPy~d~~v~~~~d~lLl~ 342 (618)
T KOG0797|consen 263 QESLAATFGAGLSSACVVDIGAQKTSIACVEDGVSLPNTRIILPYGGDDITRCFLWLLRRSGFPYQDCDVLAPIDWLLLN 342 (618)
T ss_pred hhhhHHHhcCCccceeEEEccCcceeEEEeecCccccCceEEeccCCchHHHHHHHHHHhcCCCcccccccccccHHHHH
Confidence 999999999999999999999999999999999999999999999911 00
Q ss_pred -----hh---hhcccCCc--ceEECCCC----cEEEecceeeccccccccCCCCC-------------------------
Q 020526 173 -----YE---KTQKSCEI--EQHTLPDG----QVIRIGKERYTVGEALFQPSILG------------------------- 213 (325)
Q Consensus 173 -----~~---~~~~~~~~--~~~~lpd~----~~i~l~~e~~~~~E~lF~p~~~~------------------------- 213 (325)
|. ......+. -.+.-||+ .++.+++|...+|=+||.|.+++
T Consensus 343 ~LKe~Fc~l~~a~~~vQ~~~F~~R~pn~~~~kytfk~~DE~mlAPlaLF~P~lf~~~~tk~~~~q~~~q~d~~d~fd~e~ 422 (618)
T KOG0797|consen 343 QLKEKFCHLRAAELGVQLTVFSYREPNPPTLKYTFKLGDEVMLAPLALFYPNLFVIEGTKSHKNQSFPQPDREDLFDYEY 422 (618)
T ss_pred HHHHHhccccHhhhhhhhhhhhccCCCCcceeeeeeccchhhccchhhhhhhhhhccccccccccccCCCCcccccchhh
Confidence 00 00000000 00011111 01111222222222222222110
Q ss_pred --------------------------------------------------------------------------CcC---
Q 020526 214 --------------------------------------------------------------------------LEA--- 216 (325)
Q Consensus 214 --------------------------------------------------------------------------~~~--- 216 (325)
...
T Consensus 423 ~~~~~~~~~~~~~g~~~l~ls~~i~~~~~~~~~l~~~~d~~Elg~t~~d~f~p~~~s~~gslaa~~i~n~~~~~~~f~gl 502 (618)
T KOG0797|consen 423 LLEDTWKQDFGGGGNDGLQLSDSIGFSNRIRDQLPEKPDKEELGVTLKDNFAPLEKSIVGSLAAASIMNKKGLYESFYGL 502 (618)
T ss_pred hhhhcccccccccccccccccccccccccccccccccccchhhccccccccCCchhhhhhhhhhhhhhcccceeccccch
Confidence 001
Q ss_pred -CcHHHHHHHHHHhC-ChHHHHhccccEEEecCCCCccchHHHHHHhh-ccCCC-C---cceEEeCCCCCCCCCCCceee
Q 020526 217 -HGIVEQLVHTISTV-SSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLCSS-A---IRPTLVKPPEYMPENLTLYSA 289 (325)
Q Consensus 217 -~~i~~~I~~~i~~~-~~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL-~~~~~-~---~~v~v~~~~~~~~~~~~~~~~ 289 (325)
..+.+.|..+|..+ ..|.++.|++.|.++||+.++||+.+-|++.+ ...|. . ..|.|+.+|. .++|++.+
T Consensus 503 ~l~ldqsii~sid~~~sdd~~rKl~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~pr---dMdp~~Va 579 (618)
T KOG0797|consen 503 LLALDQSIISSIDSALSDDTKRKLFSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPR---DMDPQFVA 579 (618)
T ss_pred hhccchhHHHhhhhhccchhhHhhhhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCc---CCCchheE
Confidence 13445577777664 45789999999999999999999999999998 55443 2 3788898886 45799999
Q ss_pred eehhhhhhccCCCCCeeeeHHHHhhcCcchhhcccC
Q 020526 290 WIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF 325 (325)
Q Consensus 290 W~G~si~a~l~~~~~~~itk~ey~e~G~~~~~~k~~ 325 (325)
|.||+++|-+..-.+.||++.||.-+|.++++.||+
T Consensus 580 WKGaaIla~l~~~~ELwI~~~dW~~~G~RvL~~k~~ 615 (618)
T KOG0797|consen 580 WKGAAILAILDFVRELWIENSDWQVHGVRVLQYKKY 615 (618)
T ss_pred ecchhhhhHHHHHHHHheechhHhhhhhhhhhhccc
Confidence 999999999999999999999999999999999984
No 17
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=99.97 E-value=2.2e-31 Score=246.32 Aligned_cols=269 Identities=19% Similarity=0.258 Sum_probs=202.3
Q ss_pred eEEEEcCCCcEEEeeeCCCCCCcEecccceeecCC---CcccccCcccccc-----Cce-eccccCCeecCHHHHHHHHH
Q 020526 3 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLE---DGSSSVDNSTLVE-----DVT-VDPVVRGFIRDWDAMEDLLH 73 (325)
Q Consensus 3 ~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~~---~~~~g~~~~~~~~-----~~~-~~p~~~g~i~d~~~~~~il~ 73 (325)
.++||+||.++|+|++ ++. +....||+++.... ..++| +++.... +++ .+|+++|.|.||+.++.+|+
T Consensus 10 ~vgiDlGt~~t~i~~~-~~~-~~~~~ps~v~~~~~~~~~~~vG-~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~e~ll~ 86 (335)
T PRK13930 10 DIGIDLGTANTLVYVK-GKG-IVLNEPSVVAIDTKTGKVLAVG-EEAKEMLGRTPGNIEAIRPLKDGVIADFEATEAMLR 86 (335)
T ss_pred ceEEEcCCCcEEEEEC-CCC-EEEecCCEEEEECCCCeEEEEc-HHHHHhhhcCCCCeEEeecCCCCeEcCHHHHHHHHH
Confidence 3899999999999999 774 56678999876432 25789 8875432 344 49999999999999999999
Q ss_pred HHHHhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCC-----ceEEEEEcCCCceE
Q 020526 74 HVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKID 148 (325)
Q Consensus 74 ~~~~~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVdiG~~~t~ 148 (325)
+++.+.+...+...++++++.|...+...|+.+.+ +||.++++.++++++|+||++++|. .+++|||+|++.|+
T Consensus 87 ~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~-~~e~~g~~~~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG~gttd 165 (335)
T PRK13930 87 YFIKKARGRRFFRKPRIVICVPSGITEVERRAVRE-AAEHAGAREVYLIEEPMAAAIGAGLPVTEPVGNMVVDIGGGTTE 165 (335)
T ss_pred HHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHH-HHHHcCCCeEEecccHHHHHHhcCCCcCCCCceEEEEeCCCeEE
Confidence 99966444333257889999999988888877777 7899999999999999999999987 57899999999999
Q ss_pred EEEeecCeeccccceeecCcch-----------hchh-----------hhc-cc---C-CcceEEC-----CCC--cEEE
Q 020526 149 IAPVIEGAVQHIASRRFEVGDE-----------LAYE-----------KTQ-KS---C-EIEQHTL-----PDG--QVIR 194 (325)
Q Consensus 149 v~pv~~G~~i~~~~~~~~~ge~-----------~~~~-----------~~~-~~---~-~~~~~~l-----pd~--~~i~ 194 (325)
++++.+|.++.. ...++|.+ ..|. |.. .. . ......+ ..+ ..+.
T Consensus 166 vs~v~~g~~~~~--~~~~lGG~~id~~l~~~l~~~~~~~~~~~~ae~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (335)
T PRK13930 166 VAVISLGGIVYS--ESIRVAGDEMDEAIVQYVRRKYNLLIGERTAEEIKIEIGSAYPLDEEESMEVRGRDLVTGLPKTIE 243 (335)
T ss_pred EEEEEeCCEEee--cCcCchhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhcCcCCCCCceEEEECccCCCCCCeeEE
Confidence 999999998753 45677721 0010 000 00 0 0001111 111 1344
Q ss_pred ecceeeccccccccCCCCCCcCCcHHHHHHHHHHhCChHHHHhcccc-EEEecCCCCccchHHHHHHhhccCCCCcceEE
Q 020526 195 IGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLEN-TVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTL 273 (325)
Q Consensus 195 l~~e~~~~~E~lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r~~l~~n-Iil~GG~s~~~G~~~rl~~eL~~~~~~~~v~v 273 (325)
++.+++ .|++|++. .++.+.|.++|++|+++.++.++.| |+|+||+|++|||.+||++++ ..++++
T Consensus 244 i~~~~~--~e~i~~~~------~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~-----~~~v~~ 310 (335)
T PRK13930 244 ISSEEV--REALAEPL------QQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEET-----GLPVHI 310 (335)
T ss_pred ECHHHH--HHHHHHHH------HHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHH-----CCCcee
Confidence 444544 48888775 6899999999999999999999998 999999999999999999999 233444
Q ss_pred eCCCCCCCCCCCceeeeehhhhhhc
Q 020526 274 VKPPEYMPENLTLYSAWIGGAILAK 298 (325)
Q Consensus 274 ~~~~~~~~~~~~~~~~W~G~si~a~ 298 (325)
... |..+.=.|+++++.
T Consensus 311 ~~~--------p~~ava~Ga~~~~~ 327 (335)
T PRK13930 311 AED--------PLTCVARGTGKALE 327 (335)
T ss_pred cCC--------HHHHHHHHHHHHHh
Confidence 333 45677789988875
No 18
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=99.97 E-value=1.1e-30 Score=241.37 Aligned_cols=266 Identities=18% Similarity=0.249 Sum_probs=198.2
Q ss_pred eEEEEcCCCcEEEeeeCCCCCCcEecccceeecCC---CcccccCcccccc-----Cce-eccccCCeecCHHHHHHHHH
Q 020526 3 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLE---DGSSSVDNSTLVE-----DVT-VDPVVRGFIRDWDAMEDLLH 73 (325)
Q Consensus 3 ~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~~---~~~~g~~~~~~~~-----~~~-~~p~~~g~i~d~~~~~~il~ 73 (325)
.|+||+||.++|+|++ +++. ...+||+++...+ ..++| +++.... .++ .+|+++|.+.||+.++.+|+
T Consensus 7 ~igIDlGt~~~~i~~~-~~~~-~~~~ps~v~~~~~~~~~~~vG-~~a~~~~~~~~~~~~~~~pi~~G~i~d~~~~~~ll~ 83 (334)
T PRK13927 7 DLGIDLGTANTLVYVK-GKGI-VLNEPSVVAIRTDTKKVLAVG-EEAKQMLGRTPGNIVAIRPMKDGVIADFDVTEKMLK 83 (334)
T ss_pred eeEEEcCcceEEEEEC-CCcE-EEecCCEEEEECCCCeEEEec-HHHHHHhhcCCCCEEEEecCCCCeecCHHHHHHHHH
Confidence 4899999999999999 8765 6789999987543 24789 8875432 344 49999999999999999999
Q ss_pred HHHHhccCCCCCCCc-eEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCC-----ceEEEEEcCCCce
Q 020526 74 HVLYAGLGWEEGNEG-QILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKI 147 (325)
Q Consensus 74 ~~~~~~l~~~~~~~~-~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVdiG~~~t 147 (325)
+++.+.+.. + .++ .++++.| .+....++++++.+||.++++.+.++++|++|++++|. ++++|||+|++.|
T Consensus 84 ~~~~~~~~~-~-~~~~~~vi~vP-~~~~~~~r~~~~~a~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lvvDiGggtt 160 (334)
T PRK13927 84 YFIKKVHKN-F-RPSPRVVICVP-SGITEVERRAVRESALGAGAREVYLIEEPMAAAIGAGLPVTEPTGSMVVDIGGGTT 160 (334)
T ss_pred HHHHHHhhc-c-CCCCcEEEEeC-CCCCHHHHHHHHHHHHHcCCCeeccCCChHHHHHHcCCcccCCCeEEEEEeCCCeE
Confidence 999887766 5 556 4566666 55666777888999999999999999999999999986 4679999999999
Q ss_pred EEEEe-ecCeeccccceeecCcch-----------hch----h-------hhc-----ccCCcceEECC-----CCc--E
Q 020526 148 DIAPV-IEGAVQHIASRRFEVGDE-----------LAY----E-------KTQ-----KSCEIEQHTLP-----DGQ--V 192 (325)
Q Consensus 148 ~v~pv-~~G~~i~~~~~~~~~ge~-----------~~~----~-------~~~-----~~~~~~~~~lp-----d~~--~ 192 (325)
+++++ .+|...... .++|.+ ..| . |.. .......+.+. .+. .
T Consensus 161 dvs~v~~~~~~~~~~---~~lGG~~id~~l~~~l~~~~~~~~~~~~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (334)
T PRK13927 161 EVAVISLGGIVYSKS---VRVGGDKFDEAIINYVRRNYNLLIGERTAERIKIEIGSAYPGDEVLEMEVRGRDLVTGLPKT 237 (334)
T ss_pred EEEEEecCCeEeeCC---cCChHHHHHHHHHHHHHHHhCcCcCHHHHHHHHHHhhccCCCCCCceEEEeCcccCCCCCeE
Confidence 99999 677665543 356621 001 0 000 00000111111 111 3
Q ss_pred EEecceeeccccccccCCCCCCcCCcHHHHHHHHHHhCChHHHHhcccc-EEEecCCCCccchHHHHHHhhccCCCCcce
Q 020526 193 IRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLEN-TVLCGGTTSMTGFEDRFQKEAGLCSSAIRP 271 (325)
Q Consensus 193 i~l~~e~~~~~E~lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r~~l~~n-Iil~GG~s~~~G~~~rl~~eL~~~~~~~~v 271 (325)
+.++.+++ .|++|+|. .++.+.|.++|++++.+.++.++++ |+|+||+|++|||.+||++++ ..++
T Consensus 238 ~~i~~~~~--~e~i~~~~------~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~-----~~~v 304 (334)
T PRK13927 238 ITISSNEI--REALQEPL------SAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEET-----GLPV 304 (334)
T ss_pred EEECHHHH--HHHHHHHH------HHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHH-----CCCc
Confidence 44455555 37888775 6899999999999999999999985 999999999999999999999 3345
Q ss_pred EEeCCCCCCCCCCCceeeeehhhhhhc
Q 020526 272 TLVKPPEYMPENLTLYSAWIGGAILAK 298 (325)
Q Consensus 272 ~v~~~~~~~~~~~~~~~~W~G~si~a~ 298 (325)
++..+ |..+.=.|+++++.
T Consensus 305 ~~~~~--------P~~ava~Ga~~~~~ 323 (334)
T PRK13927 305 HVAED--------PLTCVARGTGKALE 323 (334)
T ss_pred EecCC--------HHHHHHHHHHHHHh
Confidence 55444 44778889988875
No 19
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=99.96 E-value=2.2e-28 Score=225.92 Aligned_cols=265 Identities=20% Similarity=0.241 Sum_probs=196.2
Q ss_pred EEEEcCCCcEEEeeeCCCCCCcEecccceeecCC-----C--cccccCccccc-----cCce-eccccCCeecCHHHHHH
Q 020526 4 AVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLE-----D--GSSSVDNSTLV-----EDVT-VDPVVRGFIRDWDAMED 70 (325)
Q Consensus 4 vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~~-----~--~~~g~~~~~~~-----~~~~-~~p~~~g~i~d~~~~~~ 70 (325)
|-||+||.++++-.. ++ .-....||+++...+ + ..+| +++... ..++ ++|+++|.|.||+.++.
T Consensus 5 ~giDlGt~~s~i~~~-~~-~~~~~~psvv~~~~~~~~~~~~~~~vG-~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~~~ 81 (333)
T TIGR00904 5 IGIDLGTANTLVYVK-GR-GIVLNEPSVVAIRTDRDAKTKSILAVG-HEAKEMLGKTPGNIVAIRPMKDGVIADFEVTEK 81 (333)
T ss_pred eEEecCcceEEEEEC-CC-CEEEecCCEEEEecCCCCCCCeEEEEh-HHHHHhhhcCCCCEEEEecCCCCEEEcHHHHHH
Confidence 789999999998554 33 334567888876533 2 5689 887554 2445 49999999999999999
Q ss_pred HHHHHHHhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCC-----ceEEEEEcCCC
Q 020526 71 LLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHG 145 (325)
Q Consensus 71 il~~~~~~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVdiG~~ 145 (325)
+|+|++.+.+........+++++.|...+...|+. ++.+||.++++.+.++++|++|++++|. .+++|||+|++
T Consensus 82 ~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~-~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG~g 160 (333)
T TIGR00904 82 MIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRA-VKESALSAGAREVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGGG 160 (333)
T ss_pred HHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHH-HHHHHHHcCCCeEEEecCHHHHHHhcCCcccCCceEEEEEcCCC
Confidence 99999987665433122369999999999988887 6668999999999999999999999987 67899999999
Q ss_pred ceEEEEe-ecCeeccccceeecCcch-----------hchh-----------hh-ccc-----CCcc---------eEEC
Q 020526 146 KIDIAPV-IEGAVQHIASRRFEVGDE-----------LAYE-----------KT-QKS-----CEIE---------QHTL 187 (325)
Q Consensus 146 ~t~v~pv-~~G~~i~~~~~~~~~ge~-----------~~~~-----------~~-~~~-----~~~~---------~~~l 187 (325)
.|+++++ .+|..+...+ ++|.+ ..|. |. ... .... .+.+
T Consensus 161 ttdvs~v~~~~~~~~~~~---~lGG~did~~l~~~l~~~~~~~~~~~~ae~lK~~l~~~~~~~~~~~~~~~~~~~~~~~~ 237 (333)
T TIGR00904 161 TTEVAVISLGGIVVSRSI---RVGGDEFDEAIINYIRRTYNLLIGEQTAERIKIEIGSAYPLNDEPRKMEVRGRDLVTGL 237 (333)
T ss_pred eEEEEEEEeCCEEecCCc---cchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHhccccccccccceeecCccccCCC
Confidence 9999999 7776655433 56621 0110 00 000 0000 1223
Q ss_pred CCCcEEEecceeeccccccccCCCCCCcCCcHHHHHHHHHHhCChHHHHhccc-cEEEecCCCCccchHHHHHHhhccCC
Q 020526 188 PDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLE-NTVLCGGTTSMTGFEDRFQKEAGLCS 266 (325)
Q Consensus 188 pd~~~i~l~~e~~~~~E~lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r~~l~~-nIil~GG~s~~~G~~~rl~~eL~~~~ 266 (325)
|++. .+..+ .+.|++|+|. .++.+.|.+++++++++.+..+++ +|+|+||+|++|||.+||++++
T Consensus 238 ~~~~--~i~~~--~~~e~i~~~~------~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~---- 303 (333)
T TIGR00904 238 PRTI--EITSV--EVREALQEPV------NQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKET---- 303 (333)
T ss_pred CeEE--EECHH--HHHHHHHHHH------HHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHH----
Confidence 3332 33322 5678888885 689999999999999999999997 7999999999999999999999
Q ss_pred CCcceEEeCCCCCCCCCCCceeeeehhhhhhc
Q 020526 267 SAIRPTLVKPPEYMPENLTLYSAWIGGAILAK 298 (325)
Q Consensus 267 ~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~ 298 (325)
..++.+. .+ |..++=.||++++.
T Consensus 304 -~~~v~~~--~~------P~~~va~Ga~~~~~ 326 (333)
T TIGR00904 304 -GLPVIVA--DD------PLLCVAKGTGKALE 326 (333)
T ss_pred -CCCceec--CC------hHHHHHHHHHHHHh
Confidence 2333433 33 55788889998865
No 20
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=99.95 E-value=5.9e-27 Score=216.20 Aligned_cols=264 Identities=19% Similarity=0.293 Sum_probs=192.2
Q ss_pred ceEEEEcCCCcEEEeeeCCCCCCc-EecccceeecCCC---cccccCcccccc-----Cce-eccccCCeecCHHHHHHH
Q 020526 2 EAAVVDAGSKLLKAGPAIPDQAPS-MVIPSQMKRVLED---GSSSVDNSTLVE-----DVT-VDPVVRGFIRDWDAMEDL 71 (325)
Q Consensus 2 ~~vViD~Gs~~~k~G~a~gd~~P~-~~~ps~~~~~~~~---~~~g~~~~~~~~-----~~~-~~p~~~g~i~d~~~~~~i 71 (325)
+.|-||+||.++++ |. .. .+. ...||+++...++ .++| ++|.... .+. .+|+++|.|.|||..+.+
T Consensus 5 ~~~giDlGt~~~~i-~~-~~-~~~~~~~ps~va~~~~~~~~~~vG-~~A~~~~~~~p~~~~~~~pi~~G~I~d~d~~~~~ 80 (335)
T PRK13929 5 TEIGIDLGTANILV-YS-KN-KGIILNEPSVVAVDTETKAVLAIG-TEAKNMIGKTPGKIVAVRPMKDGVIADYDMTTDL 80 (335)
T ss_pred CeEEEEcccccEEE-EE-CC-CcEEecCCcEEEEECCCCeEEEeC-HHHHHhhhcCCCcEEEEecCCCCccCCHHHHHHH
Confidence 35789999999998 54 22 233 3468888765333 4789 8885542 333 499999999999999999
Q ss_pred HHHHHHh---ccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcC-----CceEEEEEcC
Q 020526 72 LHHVLYA---GLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVG-----RISGCTVDIG 143 (325)
Q Consensus 72 l~~~~~~---~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g-----~~tglVVdiG 143 (325)
|++++.+ .++..+ ..++++++.|+..+..+|+.+.+ ++|.++++.+.++.+|+||++++| ..+++|||+|
T Consensus 81 l~~~~~~~~~~l~~~~-~~~~vvitvP~~~~~~~R~~l~~-a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lvvDiG 158 (335)
T PRK13929 81 LKQIMKKAGKNIGMTF-RKPNVVVCTPSGSTAVERRAISD-AVKNCGAKNVHLIEEPVAAAIGADLPVDEPVANVVVDIG 158 (335)
T ss_pred HHHHHHHHHHhcCCCC-CCCeEEEEcCCCCCHHHHHHHHH-HHHHcCCCeeEeecCHHHHHHhcCCCcCCCceEEEEEeC
Confidence 9999974 456555 56799999999999999999999 889999999999999999999997 4678999999
Q ss_pred CCceEEEEeecCeeccccceeecCcch-----------hchh-----------h-hccc----CCcceEE-----CCCC-
Q 020526 144 HGKIDIAPVIEGAVQHIASRRFEVGDE-----------LAYE-----------K-TQKS----CEIEQHT-----LPDG- 190 (325)
Q Consensus 144 ~~~t~v~pv~~G~~i~~~~~~~~~ge~-----------~~~~-----------~-~~~~----~~~~~~~-----lpd~- 190 (325)
++.|+++++..|..+.. ...++|.+ ..|. | .... .....+. +..+
T Consensus 159 ~gtt~v~vi~~~~~~~~--~~~~~GG~~id~~l~~~l~~~~~~~~~~~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~~ 236 (335)
T PRK13929 159 GGTTEVAIISFGGVVSC--HSIRIGGDQLDEDIVSFVRKKYNLLIGERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGL 236 (335)
T ss_pred CCeEEEEEEEeCCEEEe--cCcCCHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHHHHcCCCCCCCCceEEEeCCccCCCC
Confidence 99999999944433332 23456621 0110 0 0000 0001111 1111
Q ss_pred -cEEEecceeec--cccccccCCCCCCcCCcHHHHHHHHHHhCChHHHHhccc-cEEEecCCCCccchHHHHHHhhccCC
Q 020526 191 -QVIRIGKERYT--VGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLE-NTVLCGGTTSMTGFEDRFQKEAGLCS 266 (325)
Q Consensus 191 -~~i~l~~e~~~--~~E~lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r~~l~~-nIil~GG~s~~~G~~~rl~~eL~~~~ 266 (325)
..+.++.+++. +.|.+| .+.+.|.++|++||++.+..+++ +|+||||+|++|||.+|+++++
T Consensus 237 p~~i~i~~~~~~~~i~~~l~----------~i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~---- 302 (335)
T PRK13929 237 PKTITLESKEIQGAMRESLL----------HILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEI---- 302 (335)
T ss_pred CeEEEEcHHHHHHHHHHHHH----------HHHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHH----
Confidence 34555555554 456666 48999999999999999999998 6999999999999999999999
Q ss_pred CCcceEEeCCCCCCCCCCCceeeeehhhhh
Q 020526 267 SAIRPTLVKPPEYMPENLTLYSAWIGGAIL 296 (325)
Q Consensus 267 ~~~~v~v~~~~~~~~~~~~~~~~W~G~si~ 296 (325)
..++++... |..+.=.|+..+
T Consensus 303 -~~~v~~~~~--------P~~~Va~Ga~~~ 323 (335)
T PRK13929 303 -VVPVHVAAN--------PLESVAIGTGRS 323 (335)
T ss_pred -CCCceeCCC--------HHHHHHHHHHHH
Confidence 234444333 456777777665
No 21
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.94 E-value=5.4e-26 Score=206.17 Aligned_cols=272 Identities=22% Similarity=0.317 Sum_probs=189.3
Q ss_pred ceEEEEcCCCcEEEeeeCCCCCCcEecccceeecCCC---cccccCcccccc-----Cce-eccccCCeecCHHHHHHHH
Q 020526 2 EAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLED---GSSSVDNSTLVE-----DVT-VDPVVRGFIRDWDAMEDLL 72 (325)
Q Consensus 2 ~~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~~~---~~~g~~~~~~~~-----~~~-~~p~~~g~i~d~~~~~~il 72 (325)
+-+-||+||.+|++ |. .+..=....||+++...+. ..+| ++|..+. +++ .+|+++|.|.|++..+.++
T Consensus 2 ~~igIDLGT~~t~i-~~-~~~Giv~~epSvVA~~~~~~~i~avG-~~A~~m~gktp~~i~~~~Pl~~GvI~D~~~~~~~l 78 (326)
T PF06723_consen 2 KDIGIDLGTSNTRI-YV-KGKGIVLNEPSVVAYDKDTGKILAVG-DEAKAMLGKTPDNIEVVRPLKDGVIADYEAAEEML 78 (326)
T ss_dssp SEEEEEE-SSEEEE-EE-TTTEEEEEEES-EEEETTT--EEEES-HHHHTTTTS-GTTEEEE-SEETTEESSHHHHHHHH
T ss_pred CceEEecCcccEEE-EE-CCCCEEEecCcEEEEECCCCeEEEEh-HHHHHHhhcCCCccEEEccccCCcccCHHHHHHHH
Confidence 45789999999999 55 3444556789999865443 3468 8875542 455 4999999999999999999
Q ss_pred HHHHHhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCC-----ceEEEEEcCCCce
Q 020526 73 HHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKI 147 (325)
Q Consensus 73 ~~~~~~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVdiG~~~t 147 (325)
++++++.++...+....++++.|.-.+..+|+.+.+.+. ..++.+|+++++|++|++++|. ...+|||||+++|
T Consensus 79 ~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~~-~aGa~~V~li~ep~AaAiGaGl~i~~~~g~miVDIG~GtT 157 (326)
T PF06723_consen 79 RYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAAR-QAGARKVYLIEEPIAAAIGAGLDIFEPRGSMIVDIGGGTT 157 (326)
T ss_dssp HHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHH-HTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE-SS-E
T ss_pred HHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHHH-HcCCCEEEEecchHHHHhcCCCCCCCCCceEEEEECCCeE
Confidence 999998777544467789999999999999999999885 5899999999999999999984 3669999999999
Q ss_pred EEEEeecCeeccccceeecCcch-----------hchh-----------h-h---------cccCCcceEECCCCcEEEe
Q 020526 148 DIAPVIEGAVQHIASRRFEVGDE-----------LAYE-----------K-T---------QKSCEIEQHTLPDGQVIRI 195 (325)
Q Consensus 148 ~v~pv~~G~~i~~~~~~~~~ge~-----------~~~~-----------~-~---------~~~~~~~~~~lpd~~~i~l 195 (325)
.+..+..|..+.+ ..+.+|.. ..|. | . ........-.+-+|....+
T Consensus 158 diavislggiv~s--~si~~gG~~~DeaI~~~ir~~y~l~Ig~~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~~ 235 (326)
T PF06723_consen 158 DIAVISLGGIVAS--RSIRIGGDDIDEAIIRYIREKYNLLIGERTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKSI 235 (326)
T ss_dssp EEEEEETTEEEEE--EEES-SHHHHHHHHHHHHHHHHSEE--HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEE
T ss_pred EEEEEECCCEEEE--EEEEecCcchhHHHHHHHHHhhCcccCHHHHHHHHHhcceeeccCCCceEEEECccccCCCcEEE
Confidence 9999999988775 44566611 1110 0 0 0011122334455654443
Q ss_pred cceeeccccccccCCCCCCcCCcHHHHHHHHHHhCChHHHHhcccc-EEEecCCCCccchHHHHHHhhccCCCCcceEEe
Q 020526 196 GKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLEN-TVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLV 274 (325)
Q Consensus 196 ~~e~~~~~E~lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r~~l~~n-Iil~GG~s~~~G~~~rl~~eL~~~~~~~~v~v~ 274 (325)
.-..-.+.|++-.+- ..|.+.|.+++.++|+++..++++| |+||||+|+++||.++|++++ .+++++.
T Consensus 236 ~i~~~ev~~ai~~~~------~~I~~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~-----~~pV~va 304 (326)
T PF06723_consen 236 EITSSEVREAIEPPV------DQIVEAIKEVLEKTPPELAADILENGIVLTGGGALLRGLDEYISEET-----GVPVRVA 304 (326)
T ss_dssp EEEHHHHHHHHHHHH------HHHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHH-----SS-EEE-
T ss_pred EEcHHHHHHHHHHHH------HHHHHHHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHH-----CCCEEEc
Confidence 222223333333332 5799999999999999999999987 999999999999999999999 5566666
Q ss_pred CCCCCCCCCCCceeeeehhhhhhc
Q 020526 275 KPPEYMPENLTLYSAWIGGAILAK 298 (325)
Q Consensus 275 ~~~~~~~~~~~~~~~W~G~si~a~ 298 (325)
..| .++.-.|+..+..
T Consensus 305 ~~P--------~~~va~G~~~~l~ 320 (326)
T PF06723_consen 305 DDP--------LTAVARGAGKLLE 320 (326)
T ss_dssp SST--------TTHHHHHHHHTTC
T ss_pred CCH--------HHHHHHHHHHHHh
Confidence 554 4777788766543
No 22
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.92 E-value=2.2e-24 Score=199.39 Aligned_cols=268 Identities=18% Similarity=0.273 Sum_probs=190.1
Q ss_pred eEEEEcCCCcEEEeeeCCCCCCcEecccceeecCC--C-cccccCccccc-----cCce-eccccCCeecCHHHHHHHHH
Q 020526 3 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLE--D-GSSSVDNSTLV-----EDVT-VDPVVRGFIRDWDAMEDLLH 73 (325)
Q Consensus 3 ~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~~--~-~~~g~~~~~~~-----~~~~-~~p~~~g~i~d~~~~~~il~ 73 (325)
-+-||+||.++++... ++ .-....||.+....+ . .++| +++..+ ..+. .+|+++|.|.||+..+.+|+
T Consensus 5 ~~gIDlGt~~~~i~~~-~~-~~v~~~psvv~~~~~~~~i~~vG-~~A~~~~~~~p~~~~~~~pi~~G~i~d~~~~~~~l~ 81 (336)
T PRK13928 5 DIGIDLGTANVLVYVK-GK-GIVLNEPSVVAIDKNTNKVLAVG-EEARRMVGRTPGNIVAIRPLRDGVIADYDVTEKMLK 81 (336)
T ss_pred eeEEEcccccEEEEEC-CC-CEEEccCCEEEEECCCCeEEEec-HHHHHhhhcCCCCEEEEccCCCCeEecHHHHHHHHH
Confidence 3789999999999555 33 344467888776533 2 3678 887544 2344 49999999999999999999
Q ss_pred HHHHhccCCCCCCCce-EEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCC-----ceEEEEEcCCCce
Q 020526 74 HVLYAGLGWEEGNEGQ-ILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKI 147 (325)
Q Consensus 74 ~~~~~~l~~~~~~~~~-vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVdiG~~~t 147 (325)
|++.+...... ..+| ++++.|... ...+++.++.+++.++++.+.++++|++|++++|. ..++|||+|+++|
T Consensus 82 ~~~~~~~~~~~-~~~p~~vitvP~~~-~~~~r~~~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lVvDiGggtt 159 (336)
T PRK13928 82 YFINKACGKRF-FSKPRIMICIPTGI-TSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLDISQPSGNMVVDIGGGTT 159 (336)
T ss_pred HHHHHHhccCC-CCCCeEEEEeCCCC-CHHHHHHHHHHHHHcCCCceEecccHHHHHHHcCCcccCCCeEEEEEeCCCeE
Confidence 99965322324 4566 788886654 45677777788899999999999999999999986 6789999999999
Q ss_pred EEEEeecCeeccccceeecCcch-----------hchhh-----hc-------ccC----CcceEEC-----CCC--cEE
Q 020526 148 DIAPVIEGAVQHIASRRFEVGDE-----------LAYEK-----TQ-------KSC----EIEQHTL-----PDG--QVI 193 (325)
Q Consensus 148 ~v~pv~~G~~i~~~~~~~~~ge~-----------~~~~~-----~~-------~~~----~~~~~~l-----pd~--~~i 193 (325)
.++++..|..+... .+++|.+ ..|.. .. ... ....... ..+ ..+
T Consensus 160 dvsvv~~g~~~~~~--~~~lGG~did~~i~~~l~~~~~~~~~~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~ 237 (336)
T PRK13928 160 DIAVLSLGGIVTSS--SIKVAGDKFDEAIIRYIRKKYKLLIGERTAEEIKIKIGTAFPGAREEEMEIRGRDLVTGLPKTI 237 (336)
T ss_pred EEEEEEeCCEEEeC--CcCCHHHHHHHHHHHHHHHHhchhcCHHHHHHHHHHhcccccccCCcEEEEecccccCCCceEE
Confidence 99999999776543 5567722 01100 00 000 0011111 011 122
Q ss_pred EecceeeccccccccCCCCCCcCCcHHHHHHHHHHhCChHHHHhccc-cEEEecCCCCccchHHHHHHhhccCCCCcceE
Q 020526 194 RIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLE-NTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPT 272 (325)
Q Consensus 194 ~l~~e~~~~~E~lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r~~l~~-nIil~GG~s~~~G~~~rl~~eL~~~~~~~~v~ 272 (325)
.++.+++. |+++.+- ..+.+.|.+++.+++++++..++. +|+|+||+|++||+.++|++++ ..+++
T Consensus 238 ~i~~~~~~--eii~~~~------~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~-----~~~v~ 304 (336)
T PRK13928 238 TVTSEEIR--EALKEPV------SAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEET-----KVPVY 304 (336)
T ss_pred EECHHHHH--HHHHHHH------HHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHH-----CCCce
Confidence 33333332 5555543 578999999999999999989998 7999999999999999999999 23444
Q ss_pred EeCCCCCCCCCCCceeeeehhhhhhc
Q 020526 273 LVKPPEYMPENLTLYSAWIGGAILAK 298 (325)
Q Consensus 273 v~~~~~~~~~~~~~~~~W~G~si~a~ 298 (325)
+... |..+.=.|+++++.
T Consensus 305 ~~~~--------P~~ava~Gaa~~~~ 322 (336)
T PRK13928 305 IAED--------PISCVALGTGKMLE 322 (336)
T ss_pred ecCC--------HHHHHHHHHHHHHh
Confidence 4333 55888899998865
No 23
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.85 E-value=1.4e-20 Score=165.46 Aligned_cols=270 Identities=19% Similarity=0.262 Sum_probs=189.4
Q ss_pred ceEEEEcCCCcEEEeeeCCCCCCcEecccceeecC--CC---cccccCccccc-----cCce-eccccCCeecCHHHHHH
Q 020526 2 EAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVL--ED---GSSSVDNSTLV-----EDVT-VDPVVRGFIRDWDAMED 70 (325)
Q Consensus 2 ~~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~--~~---~~~g~~~~~~~-----~~~~-~~p~~~g~i~d~~~~~~ 70 (325)
+.|=||+|+.+|++ |. .+..-....||+++... +. ..+| ++|+.+ .++. ++||++|+|.|++..+.
T Consensus 7 ~diGIDLGTanTlV-~~-k~kgIVl~ePSVVAi~~~~~~~~v~aVG-~eAK~MlGrTP~ni~aiRPmkdGVIAd~~~te~ 83 (342)
T COG1077 7 NDIGIDLGTANTLV-YV-KGKGIVLNEPSVVAIESEGKTKVVLAVG-EEAKQMLGRTPGNIVAIRPMKDGVIADFEVTEL 83 (342)
T ss_pred ccceeeecccceEE-EE-cCceEEecCceEEEEeecCCCceEEEeh-HHHHHHhccCCCCceEEeecCCcEeecHHHHHH
Confidence 45789999999999 55 33344456788887654 22 4578 888654 2554 69999999999999999
Q ss_pred HHHHHHHhccCCCC-CCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCC-----ceEEEEEcCC
Q 020526 71 LLHHVLYAGLGWEE-GNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGH 144 (325)
Q Consensus 71 il~~~~~~~l~~~~-~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVdiG~ 144 (325)
++.|..++..+-.. .....++++.|.-.+..+|+.+-+.+ ++.+...|+++++|.+|++++|. +-..|||||+
T Consensus 84 ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea~-~~aGa~~V~lieEp~aAAIGaglpi~ep~G~mvvDIGg 162 (342)
T COG1077 84 MLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAA-ESAGAREVYLIEEPMAAAIGAGLPIMEPTGSMVVDIGG 162 (342)
T ss_pred HHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHHH-HhccCceEEEeccHHHHHhcCCCcccCCCCCEEEEeCC
Confidence 99998876543232 24556899999999999999888877 55788999999999999999984 3479999999
Q ss_pred CceEEEEeecCeeccccceeecCc---ch-hchhhh----------cccCC-cceEECC-----------------CC--
Q 020526 145 GKIDIAPVIEGAVQHIASRRFEVG---DE-LAYEKT----------QKSCE-IEQHTLP-----------------DG-- 190 (325)
Q Consensus 145 ~~t~v~pv~~G~~i~~~~~~~~~g---e~-~~~~~~----------~~~~~-~~~~~lp-----------------d~-- 190 (325)
++|.|..|..|-.+.....+.... |. ..|-+. .+... ...+..| .|
T Consensus 163 GTTevaVISlggiv~~~Sirv~GD~~De~Ii~yvr~~~nl~IGe~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlP 242 (342)
T COG1077 163 GTTEVAVISLGGIVSSSSVRVGGDKMDEAIIVYVRKKYNLLIGERTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLP 242 (342)
T ss_pred CceeEEEEEecCEEEEeeEEEecchhhHHHHHHHHHHhCeeecHHHHHHHHHHhcccccccCCccceeeEEeeecccCCC
Confidence 999999998887777666555443 11 122110 00000 0111111 11
Q ss_pred cEEEecceeeccccccccCCCCCCcCCcHHHHHHHHHHhCChHHHHhcccc-EEEecCCCCccchHHHHHHhhccCCCCc
Q 020526 191 QVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLEN-TVLCGGTTSMTGFEDRFQKEAGLCSSAI 269 (325)
Q Consensus 191 ~~i~l~~e~~~~~E~lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r~~l~~n-Iil~GG~s~~~G~~~rl~~eL~~~~~~~ 269 (325)
+++.++.+ .+.|+|-.+- ..|.+.|...+.+||+++-.+.+++ |+++||+|++.||.+.+.+|. ..
T Consensus 243 k~i~i~s~--ev~eal~~~v------~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et-----~~ 309 (342)
T COG1077 243 KTITINSE--EIAEALEEPL------NGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEET-----GV 309 (342)
T ss_pred eeEEEcHH--HHHHHHHHHH------HHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhcc-----CC
Confidence 12222221 2334444443 5799999999999999999999999 999999999999999999998 33
Q ss_pred ceEEeCCCCCCCCCCCceeeeehhhhh
Q 020526 270 RPTLVKPPEYMPENLTLYSAWIGGAIL 296 (325)
Q Consensus 270 ~v~v~~~~~~~~~~~~~~~~W~G~si~ 296 (325)
++.+... |...+-.|+...
T Consensus 310 pv~ia~~--------pL~~Va~G~G~~ 328 (342)
T COG1077 310 PVIIADD--------PLTCVAKGTGKA 328 (342)
T ss_pred eEEECCC--------hHHHHHhccchh
Confidence 4444333 445555565444
No 24
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.65 E-value=2.7e-15 Score=131.86 Aligned_cols=201 Identities=18% Similarity=0.271 Sum_probs=133.7
Q ss_pred eccccCCeecCHHHHHHHHHHHHHh---ccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhh
Q 020526 54 VDPVVRGFIRDWDAMEDLLHHVLYA---GLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLY 130 (325)
Q Consensus 54 ~~p~~~g~i~d~~~~~~il~~~~~~---~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~ 130 (325)
..|+++|.|.|++..+.+++++... .++ . +-..++++.|...+..+|+.+.+.+ +..++..+.++.+++++++
T Consensus 28 ~~~~~~g~I~d~~~~~~~l~~l~~~a~~~~g--~-~~~~vvisVP~~~~~~~r~a~~~a~-~~aGl~~~~li~ep~Aaa~ 103 (239)
T TIGR02529 28 ADVVRDGIVVDFLGAVEIVRRLKDTLEQKLG--I-ELTHAATAIPPGTIEGDPKVIVNVI-ESAGIEVLHVLDEPTAAAA 103 (239)
T ss_pred cccccCCeEEEhHHHHHHHHHHHHHHHHHhC--C-CcCcEEEEECCCCCcccHHHHHHHH-HHcCCceEEEeehHHHHHH
Confidence 3699999999999999999999853 232 2 3468999999988888888766554 6689999999999999999
Q ss_pred hcCCceEEEEEcCCCceEEEEeecCeeccccceeecCcch-hch--hhh----cccCCcceEECCCCcEEEecceeeccc
Q 020526 131 AVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGDE-LAY--EKT----QKSCEIEQHTLPDGQVIRIGKERYTVG 203 (325)
Q Consensus 131 ~~g~~tglVVdiG~~~t~v~pv~~G~~i~~~~~~~~~ge~-~~~--~~~----~~~~~~~~~~lpd~~~i~l~~e~~~~~ 203 (325)
+++....+|||+|++.|.++-+.+|.++.. ...++|.+ .+. .+. ....+ ..+...+. ..+.+.+.
T Consensus 104 ~~~~~~~~vvDiGggtt~i~i~~~G~i~~~--~~~~~GG~~it~~Ia~~~~i~~~~AE--~~K~~~~~----~~~~~~~i 175 (239)
T TIGR02529 104 VLQIKNGAVVDVGGGTTGISILKKGKVIYS--ADEPTGGTHMSLVLAGAYGISFEEAE--EYKRGHKD----EEEIFPVV 175 (239)
T ss_pred HhcCCCcEEEEeCCCcEEEEEEECCeEEEE--EeeecchHHHHHHHHHHhCCCHHHHH--HHHHhcCC----HHHHHHHH
Confidence 988878899999999999999999987763 45556632 110 000 00000 00000000 01111111
Q ss_pred cccccCCCCCCcCCcHHHHHHHHHHhCChHHHHhccccEEEecCCCCccchHHHHHHhhccCCCCcceEEeCCCCCCCCC
Q 020526 204 EALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPEN 283 (325)
Q Consensus 204 E~lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL~~~~~~~~v~v~~~~~~~~~~ 283 (325)
+.+. ..+.+.|.+++.+.++ ..|+||||+|++||+.++|++.+ ..++++ +.+
T Consensus 176 ~~~~---------~~i~~~i~~~l~~~~~-------~~v~LtGG~a~ipgl~e~l~~~l-----g~~v~~--~~~----- 227 (239)
T TIGR02529 176 KPVY---------QKMASIVKRHIEGQGV-------KDLYLVGGACSFSGFADVFEKQL-----GLNVIK--PQH----- 227 (239)
T ss_pred HHHH---------HHHHHHHHHHHHhCCC-------CEEEEECchhcchhHHHHHHHHh-----CCCccc--CCC-----
Confidence 1111 2355555555554443 36999999999999999999999 223333 233
Q ss_pred CCceeeeehhhh
Q 020526 284 LTLYSAWIGGAI 295 (325)
Q Consensus 284 ~~~~~~W~G~si 295 (325)
|.+..=+|+.+
T Consensus 228 -P~~~va~Gaa~ 238 (239)
T TIGR02529 228 -PLYVTPLGIAM 238 (239)
T ss_pred -CCeehhheeec
Confidence 56777777653
No 25
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.55 E-value=1.5e-13 Score=122.94 Aligned_cols=227 Identities=19% Similarity=0.262 Sum_probs=147.1
Q ss_pred EEEEcCCCcEEEeeeCCCCCCcEecccceeecCCCcccccCccccccCceeccccCCeecCHHHHHHHHHHHHHh---cc
Q 020526 4 AVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVTVDPVVRGFIRDWDAMEDLLHHVLYA---GL 80 (325)
Q Consensus 4 vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~~~~~~g~~~~~~~~~~~~~p~~~g~i~d~~~~~~il~~~~~~---~l 80 (325)
++||+||.++|+=.+ +..+.. ++ ++ +. ...+++.|.+.|++.....++++... .+
T Consensus 27 ~~iDiGSssi~~vv~--~~~~~~-----~~-------~~-~~-------~~~~vr~G~i~di~~a~~~i~~~~~~ae~~~ 84 (267)
T PRK15080 27 VGVDLGTANIVLAVL--DEDGQP-----VA-------GA-LE-------WADVVRDGIVVDFIGAVTIVRRLKATLEEKL 84 (267)
T ss_pred EEEEccCceEEEEEE--cCCCCE-----EE-------EE-ec-------cccccCCCEEeeHHHHHHHHHHHHHHHHHHh
Confidence 789999999997555 323321 11 11 11 13689999999999999999988753 23
Q ss_pred CCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCCceEEEEEcCCCceEEEEeecCeeccc
Q 020526 81 GWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHI 160 (325)
Q Consensus 81 ~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVdiG~~~t~v~pv~~G~~i~~ 160 (325)
+.. -..++++.|...+..+|..+. -+.+..++.-..++.++.+++.+.+...++|||+|+++|.++-+.+|.++..
T Consensus 85 g~~---i~~v~~~vp~~~~~~~~~~~~-~~~~~aGl~~~~ii~e~~A~a~~~~~~~~~vvDIGggtt~i~v~~~g~~~~~ 160 (267)
T PRK15080 85 GRE---LTHAATAIPPGTSEGDPRAII-NVVESAGLEVTHVLDEPTAAAAVLGIDNGAVVDIGGGTTGISILKDGKVVYS 160 (267)
T ss_pred CCC---cCeEEEEeCCCCCchhHHHHH-HHHHHcCCceEEEechHHHHHHHhCCCCcEEEEeCCCcEEEEEEECCeEEEE
Confidence 333 246677888877777777766 6668899999999999999999888777899999999999999999987765
Q ss_pred cceeecCcch-h----------chhhhcccCCcceEECCCCcEEEecceeeccccccccCCCCCCcCCcHHHHHHHHHHh
Q 020526 161 ASRRFEVGDE-L----------AYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTIST 229 (325)
Q Consensus 161 ~~~~~~~ge~-~----------~~~~~~~~~~~~~~~lpd~~~i~l~~e~~~~~E~lF~p~~~~~~~~~i~~~I~~~i~~ 229 (325)
...++|.+ . +++..+ .. +..+ .. .++...+.+.++ ..+.+.|.+.++.
T Consensus 161 --~~~~~GG~~it~~Ia~~l~i~~~eAE-~l-K~~~--~~------~~~~~~ii~~~~---------~~i~~~i~~~l~~ 219 (267)
T PRK15080 161 --ADEPTGGTHMSLVLAGAYGISFEEAE-QY-KRDP--KH------HKEIFPVVKPVV---------EKMASIVARHIEG 219 (267)
T ss_pred --ecccCchHHHHHHHHHHhCCCHHHHH-HH-Hhcc--CC------HHHHHHHHHHHH---------HHHHHHHHHHHhc
Confidence 35567732 1 111100 00 0000 00 000001111111 2233444444443
Q ss_pred CChHHHHhccccEEEecCCCCccchHHHHHHhhccCCCCcceEEeCCCCCCCCCCCceeeeehhhhhh
Q 020526 230 VSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILA 297 (325)
Q Consensus 230 ~~~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a 297 (325)
. -...|+||||+|++||+.+.+++.+ ..++++ +++ |.+.+=+|+.+|+
T Consensus 220 ~-------~~~~IvLtGG~s~lpgl~e~l~~~l-----g~~v~~--~~~------P~~~~a~Gaa~~~ 267 (267)
T PRK15080 220 Q-------DVEDIYLVGGTCCLPGFEEVFEKQT-----GLPVHK--PQH------PLFVTPLGIALSC 267 (267)
T ss_pred C-------CCCEEEEECCcccchhHHHHHHHHh-----CCCccc--CCC------chHHHHHHHHhhC
Confidence 2 3457999999999999999999999 223333 333 6688888887763
No 26
>CHL00094 dnaK heat shock protein 70
Probab=99.19 E-value=5.8e-10 Score=111.24 Aligned_cols=148 Identities=14% Similarity=0.076 Sum_probs=96.5
Q ss_pred ceEEEEcCCCcEEEeeeCCCCCCcE--------ecccceeecC-CCcccccCccccc-------------c----Cc---
Q 020526 2 EAAVVDAGSKLLKAGPAIPDQAPSM--------VIPSQMKRVL-EDGSSSVDNSTLV-------------E----DV--- 52 (325)
Q Consensus 2 ~~vViD~Gs~~~k~G~a~gd~~P~~--------~~ps~~~~~~-~~~~~g~~~~~~~-------------~----~~--- 52 (325)
..|-||+||.++++++. .+..|.. ..||+++-.. ++..+| +.|... + .+
T Consensus 3 ~viGIDlGTt~s~va~~-~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG-~~A~~~~~~~p~~ti~~~KrliG~~~~~~ 80 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVM-EGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVG-QIAKRQAVINPENTFYSVKRFIGRKFSEI 80 (621)
T ss_pred ceEEEEeCcccEEEEEE-ECCEEEEEECCCCCcccceEEEEcCCCCEEEC-HHHHHhHHhCccceehhhHHhcCCChHHH
Confidence 46789999999999998 5555653 3455554322 234555 433210 0 00
Q ss_pred ----eecccc---------------CC-eecCHHHHHHHHHHHHHh---ccCCCCCCCceEEEEcCCCCCHHHHHHHHHH
Q 020526 53 ----TVDPVV---------------RG-FIRDWDAMEDLLHHVLYA---GLGWEEGNEGQILFTDPLCSPKAVREQLVQL 109 (325)
Q Consensus 53 ----~~~p~~---------------~g-~i~d~~~~~~il~~~~~~---~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~ 109 (325)
..+|+. .| .+...+....+++++... .++.. -..++++.|...+..+|+.+.+.
T Consensus 81 ~~~~~~~~~~v~~~~~g~i~~~~~~~~~~~s~eei~a~iL~~l~~~ae~~lg~~---v~~~VItVPa~f~~~qR~a~~~A 157 (621)
T CHL00094 81 SEEAKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQVLRKLVEDASKYLGET---VTQAVITVPAYFNDSQRQATKDA 157 (621)
T ss_pred HhhhhcCCeEEEECCCCCEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCC---CCeEEEEECCCCCHHHHHHHHHH
Confidence 011221 11 223344455566555432 23322 35789999999998888887766
Q ss_pred hhhhcCCCeEEEechhhhhhhhcCC-----ceEEEEEcCCCceEEEEeecC
Q 020526 110 MFETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVIEG 155 (325)
Q Consensus 110 lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVdiG~~~t~v~pv~~G 155 (325)
+ +..|+.-+.++++|.||++++|. .+-+|+|+|++++.|+.+..+
T Consensus 158 a-~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~ 207 (621)
T CHL00094 158 G-KIAGLEVLRIINEPTAASLAYGLDKKNNETILVFDLGGGTFDVSILEVG 207 (621)
T ss_pred H-HHcCCceEEEeccHHHHHHHhccccCCCCEEEEEEcCCCeEEEEEEEEc
Confidence 5 77899999999999999999874 467999999999999887544
No 27
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=99.19 E-value=4.3e-10 Score=112.39 Aligned_cols=66 Identities=15% Similarity=0.108 Sum_probs=56.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCC-----ceEEEEEcCCCceEEEEeec
Q 020526 88 GQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVIE 154 (325)
Q Consensus 88 ~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVdiG~~~t~v~pv~~ 154 (325)
..++++.|...+..+|+.+.+.+ +..|++-+.++++|.||++++|. .+-+|+|+|++++.++.+.-
T Consensus 134 ~~~VItVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~~ 204 (627)
T PRK00290 134 TEAVITVPAYFNDAQRQATKDAG-KIAGLEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILEI 204 (627)
T ss_pred ceEEEEECCCCCHHHHHHHHHHH-HHcCCceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEEE
Confidence 57899999999999888876554 77899999999999999998863 56899999999999877643
No 28
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=99.15 E-value=1.6e-09 Score=108.05 Aligned_cols=68 Identities=18% Similarity=0.157 Sum_probs=57.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCC-----ceEEEEEcCCCceEEEEee--cCe
Q 020526 88 GQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVI--EGA 156 (325)
Q Consensus 88 ~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVdiG~~~t~v~pv~--~G~ 156 (325)
..+|++.|...+..+|+.+.+.+ +..|+.-+.++++|.||++++|. .+-+|+|+|++++.|+-+. +|.
T Consensus 161 ~~aVITVPayF~~~qR~at~~Aa-~~AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~ 235 (657)
T PTZ00186 161 SNAVVTCPAYFNDAQRQATKDAG-TIAGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGV 235 (657)
T ss_pred ceEEEEECCCCChHHHHHHHHHH-HHcCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEeCCE
Confidence 57899999999998888876644 77899999999999999999874 4679999999999998764 553
No 29
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=99.15 E-value=7.2e-10 Score=109.99 Aligned_cols=268 Identities=16% Similarity=0.216 Sum_probs=150.9
Q ss_pred eEEEEcCCCcEEEeeeCCCCCCcE--------ecccceeecCC-CcccccCccccc-------------c----Cc----
Q 020526 3 AAVVDAGSKLLKAGPAIPDQAPSM--------VIPSQMKRVLE-DGSSSVDNSTLV-------------E----DV---- 52 (325)
Q Consensus 3 ~vViD~Gs~~~k~G~a~gd~~P~~--------~~ps~~~~~~~-~~~~g~~~~~~~-------------~----~~---- 52 (325)
+|-||+||.++.+++. .+..|.. .+||+++-..+ ...+| ..|... + .+
T Consensus 1 ~iGIDlGTtns~va~~-~~g~~~ii~n~~g~~~~PS~V~f~~~~~~~vG-~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~ 78 (599)
T TIGR01991 1 AVGIDLGTTNSLVASV-RSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVG-KEALAAAAEDPKNTISSVKRLMGRSIEDIK 78 (599)
T ss_pred CEEEEEccccEEEEEE-ECCEEEEEECCCCCcccCeEEEEeCCCCEEec-HHHHHhhhhChhhhHHHHHHHhCCCccchh
Confidence 4679999999999987 5544543 35777754323 45666 544211 0 00
Q ss_pred --eecccc--------------CCeecCHHHHHHHHHHHHH---hccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhh
Q 020526 53 --TVDPVV--------------RGFIRDWDAMEDLLHHVLY---AGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFET 113 (325)
Q Consensus 53 --~~~p~~--------------~g~i~d~~~~~~il~~~~~---~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~ 113 (325)
..+|+. .|.+.-.+....+++++.. ..++.. -..++++.|...+..+|+.+.+.+ +.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ei~a~iL~~lk~~a~~~lg~~---v~~~VItVPa~f~~~qR~a~~~Aa-~~ 154 (599)
T TIGR01991 79 TFSILPYRFVDGPGEMVRLRTVQGTVTPVEVSAEILKKLKQRAEESLGGD---LVGAVITVPAYFDDAQRQATKDAA-RL 154 (599)
T ss_pred hcccCCEEEEEcCCCceEEEeCCCEEcHHHHHHHHHHHHHHHHHHHhCCC---cceEEEEECCCCCHHHHHHHHHHH-HH
Confidence 011221 2223333444455555432 234333 367999999999999998877664 78
Q ss_pred cCCCeEEEechhhhhhhhcCC-----ceEEEEEcCCCceEEEEee--cCee-ccccceeecCcch------hch-----h
Q 020526 114 FNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVI--EGAV-QHIASRRFEVGDE------LAY-----E 174 (325)
Q Consensus 114 ~~~~~v~~~~~~~~a~~~~g~-----~tglVVdiG~~~t~v~pv~--~G~~-i~~~~~~~~~ge~------~~~-----~ 174 (325)
.|+.-+.++++|.||+++++. .+-+|+|+|++++.|+.+. +|.. +........+|.. .+| .
T Consensus 155 AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l~~~~~ 234 (599)
T TIGR01991 155 AGLNVLRLLNEPTAAAVAYGLDKASEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILKQLG 234 (599)
T ss_pred cCCCceEEecCHHHHHHHHhhccCCCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHHHHhhC
Confidence 999999999999999998763 4579999999999998764 3321 1111122344411 000 0
Q ss_pred --------------------hhc-ccCCcceEECC-CCcE--EEecceeeccccccccCCCCCCcCCcHHHHHHHHHHhC
Q 020526 175 --------------------KTQ-KSCEIEQHTLP-DGQV--IRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTV 230 (325)
Q Consensus 175 --------------------~~~-~~~~~~~~~lp-d~~~--i~l~~e~~~~~E~lF~p~~~~~~~~~i~~~I~~~i~~~ 230 (325)
|.. .......+.++ +|.. +.+..+.| |-++.|- ...+.+.|.+++...
T Consensus 235 ~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~g~~~~~~itr~ef---e~l~~~l-----l~~i~~~i~~~L~~a 306 (599)
T TIGR01991 235 ISADLNPEDQRLLLQAARAAKEALTDAESVEVDFTLDGKDFKGKLTRDEF---EALIQPL-----VQKTLSICRRALRDA 306 (599)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEECCcEEEEEEeHHHH---HHHHHHH-----HHHHHHHHHHHHHHc
Confidence 000 00011111111 1221 12221111 2222221 033555556666554
Q ss_pred ChHHHHhccccEEEecCCCCccchHHHHHHhhccCCCCcceEEeCCCCCCCCCCCceeeeehhhhhhcc
Q 020526 231 SSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKV 299 (325)
Q Consensus 231 ~~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~l 299 (325)
.. ...-...|+|+||+|++|++.+++.+.+.. .+....+ |..+.=.||+++|..
T Consensus 307 ~~--~~~~id~ViLvGGssriP~V~~~l~~~f~~-------~~~~~~n------pdeaVA~GAai~a~~ 360 (599)
T TIGR01991 307 GL--SVEEIKGVVLVGGSTRMPLVRRAVAELFGQ-------EPLTDID------PDQVVALGAAIQADL 360 (599)
T ss_pred CC--ChhhCCEEEEECCcCCChHHHHHHHHHhCC-------CCCCCCC------CcHHHHHHHHHHHHH
Confidence 22 222357799999999999999999977721 1112223 567788899888864
No 30
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=99.14 E-value=2.6e-09 Score=107.13 Aligned_cols=66 Identities=17% Similarity=0.136 Sum_probs=57.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCC-----ceEEEEEcCCCceEEEEee
Q 020526 87 EGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVI 153 (325)
Q Consensus 87 ~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVdiG~~~t~v~pv~ 153 (325)
-..++++.|...+..+|+.+.+. .+..|++-+.++++|.||++++|. .+-+|+|+|++++.|+.+.
T Consensus 174 v~~~VITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~ 244 (663)
T PTZ00400 174 VKQAVITVPAYFNDSQRQATKDA-GKIAGLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILE 244 (663)
T ss_pred CceEEEEECCCCCHHHHHHHHHH-HHHcCCceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEE
Confidence 36799999999999998888664 477899999999999999999874 3679999999999998764
No 31
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=99.13 E-value=1e-09 Score=109.14 Aligned_cols=145 Identities=14% Similarity=0.072 Sum_probs=93.2
Q ss_pred eEEEEcCCCcEEEeeeCCCCCCcE--------ecccceeecCC-CcccccCcccccc-----------------Cc----
Q 020526 3 AAVVDAGSKLLKAGPAIPDQAPSM--------VIPSQMKRVLE-DGSSSVDNSTLVE-----------------DV---- 52 (325)
Q Consensus 3 ~vViD~Gs~~~k~G~a~gd~~P~~--------~~ps~~~~~~~-~~~~g~~~~~~~~-----------------~~---- 52 (325)
.|=||+||.++++++. .+..|.. .+||+++-..+ +..+| +.|.... .+
T Consensus 2 viGIDlGtt~s~va~~-~~g~~~ii~n~~~~~~~PS~V~~~~~~~~~vG-~~A~~~~~~~p~~~i~~~Kr~iG~~~~~~~ 79 (595)
T TIGR02350 2 IIGIDLGTTNSCVAVM-EGGEPVVIPNAEGARTTPSVVAFTKNGERLVG-QPAKRQAVTNPENTIYSIKRFMGRRFDEVT 79 (595)
T ss_pred EEEEEeCcccEEEEEE-ECCEEEEEECCCCCcccCeEEEEeCCCCEEEC-HHHHHhhhhCchhhhHHHHHHhCCCchHHH
Confidence 5779999999999998 5555552 34666654322 45666 5442110 00
Q ss_pred ---eecccc------------CCeecCHH-HHHHHHHHHHH---hccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhh
Q 020526 53 ---TVDPVV------------RGFIRDWD-AMEDLLHHVLY---AGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFET 113 (325)
Q Consensus 53 ---~~~p~~------------~g~i~d~~-~~~~il~~~~~---~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~ 113 (325)
..+|.. +|.....+ ....+++++.. ..++.. -..++++.|...+..+|+.+.+. .+.
T Consensus 80 ~~~~~~~~~v~~~~~~~~~~v~~~~~~peel~a~~L~~l~~~a~~~~~~~---v~~~VItVPa~f~~~qR~a~~~A-a~~ 155 (595)
T TIGR02350 80 EEAKRVPYKVVGDGGDVRVKVDGKEYTPQEISAMILQKLKKDAEAYLGEK---VTEAVITVPAYFNDAQRQATKDA-GKI 155 (595)
T ss_pred HHhhcCCeeEEcCCCceEEEECCEEecHHHHHHHHHHHHHHHHHHHhCCC---CCeEEEEECCCCCHHHHHHHHHH-HHH
Confidence 011211 12222222 23344444322 233322 35789999999999998888764 477
Q ss_pred cCCCeEEEechhhhhhhhcCC------ceEEEEEcCCCceEEEEee
Q 020526 114 FNISGFYSSEQAVLSLYAVGR------ISGCTVDIGHGKIDIAPVI 153 (325)
Q Consensus 114 ~~~~~v~~~~~~~~a~~~~g~------~tglVVdiG~~~t~v~pv~ 153 (325)
.|++-+.++++|.||++++|. .+-+|+|+|++++.++.+.
T Consensus 156 AGl~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~ 201 (595)
T TIGR02350 156 AGLEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILE 201 (595)
T ss_pred cCCceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEE
Confidence 899999999999999998763 4569999999999987764
No 32
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=99.11 E-value=1.8e-09 Score=107.45 Aligned_cols=145 Identities=14% Similarity=0.135 Sum_probs=94.3
Q ss_pred eEEEEcCCCcEEEeeeCCCCCCc--------EecccceeecCCCcccccCccccc-------------c----Cc-----
Q 020526 3 AAVVDAGSKLLKAGPAIPDQAPS--------MVIPSQMKRVLEDGSSSVDNSTLV-------------E----DV----- 52 (325)
Q Consensus 3 ~vViD~Gs~~~k~G~a~gd~~P~--------~~~ps~~~~~~~~~~~g~~~~~~~-------------~----~~----- 52 (325)
.|=||+||.++.+++. .+..|. ..+||+++-..+...+| .+|... + .+
T Consensus 21 ~iGIDlGTt~s~va~~-~~g~~~ii~n~~g~~~~PS~V~f~~~~~~vG-~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~ 98 (616)
T PRK05183 21 AVGIDLGTTNSLVATV-RSGQAEVLPDEQGRVLLPSVVRYLEDGIEVG-YEARANAAQDPKNTISSVKRFMGRSLADIQQ 98 (616)
T ss_pred EEEEEeccccEEEEEE-ECCEEEEEEcCCCCeecCeEEEEcCCCEEEc-HHHHHhhHhCchhhHHHHHHHhCCCchhhhh
Confidence 4779999999999987 454454 24566665433445566 444210 0 00
Q ss_pred --eeccc--------------cCCeecCHHHHHHHHHHHHH---hccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhh
Q 020526 53 --TVDPV--------------VRGFIRDWDAMEDLLHHVLY---AGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFET 113 (325)
Q Consensus 53 --~~~p~--------------~~g~i~d~~~~~~il~~~~~---~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~ 113 (325)
..+|. ..|.+.-.+....+++++.. ..++. .-..++++.|...+..+|+.+.+. .+.
T Consensus 99 ~~~~~~~~~~~~~~g~~~~~~~~~~~~p~ei~a~iL~~lk~~ae~~lg~---~v~~~VITVPa~f~~~qR~a~~~A-a~~ 174 (616)
T PRK05183 99 RYPHLPYQFVASENGMPLIRTAQGLKSPVEVSAEILKALRQRAEETLGG---ELDGAVITVPAYFDDAQRQATKDA-ARL 174 (616)
T ss_pred hhhcCCeEEEecCCCceEEEecCCeEcHHHHHHHHHHHHHHHHHHHhCC---CcceEEEEECCCCCHHHHHHHHHH-HHH
Confidence 01121 11222223344445555432 23332 236799999999999988877555 578
Q ss_pred cCCCeEEEechhhhhhhhcCC-----ceEEEEEcCCCceEEEEee
Q 020526 114 FNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVI 153 (325)
Q Consensus 114 ~~~~~v~~~~~~~~a~~~~g~-----~tglVVdiG~~~t~v~pv~ 153 (325)
.|++-+.++++|.||+++++. .+-+|+|+|++++.|+.+.
T Consensus 175 AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSv~~ 219 (616)
T PRK05183 175 AGLNVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILR 219 (616)
T ss_pred cCCCeEEEecchHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEE
Confidence 999999999999999998763 3568999999999988764
No 33
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=99.10 E-value=4.1e-09 Score=104.27 Aligned_cols=265 Identities=15% Similarity=0.136 Sum_probs=146.4
Q ss_pred eEEEEcCCCcEEEeeeCCCCCCc--------EecccceeecCCCcccccCccc--c-cc----Cce--------------
Q 020526 3 AAVVDAGSKLLKAGPAIPDQAPS--------MVIPSQMKRVLEDGSSSVDNST--L-VE----DVT-------------- 53 (325)
Q Consensus 3 ~vViD~Gs~~~k~G~a~gd~~P~--------~~~ps~~~~~~~~~~~g~~~~~--~-~~----~~~-------------- 53 (325)
.|=||+|+.+..+++. .+..|. ..+||+++-..+...+| +.+. + ++ ++.
T Consensus 21 viGIDlGTT~S~va~~-~~~~~~ii~n~~g~~~tPS~V~f~~~~~~vG-~~Ati~~~KrliG~~~~~~~~~~~~~~~~k~ 98 (595)
T PRK01433 21 AVGIDFGTTNSLIAIA-TNRKVKVIKSIDDKELIPTTIDFTSNNFTIG-NNKGLRSIKRLFGKTLKEILNTPALFSLVKD 98 (595)
T ss_pred EEEEEcCcccEEEEEE-eCCeeEEEECCCCCeecCeEEEEcCCCEEEC-chhhHHHHHHHhCCCchhhccchhhHhhhhh
Confidence 5779999999999998 554443 34566665433345566 4430 0 00 000
Q ss_pred -------ecccc-CCee-cCHHHHHHHHHHHHH---hccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEE
Q 020526 54 -------VDPVV-RGFI-RDWDAMEDLLHHVLY---AGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYS 121 (325)
Q Consensus 54 -------~~p~~-~g~i-~d~~~~~~il~~~~~---~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~ 121 (325)
..++. .|.. .-.+....+|.++-. ..++. .-..++++.|...+..+|+.+.+. .+..|+.-+.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~---~v~~aVITVPa~f~~~qR~a~~~A-a~~AGl~v~~l 174 (595)
T PRK01433 99 YLDVNSSELKLNFANKQLRIPEIAAEIFIYLKNQAEEQLKT---NITKAVITVPAHFNDAARGEVMLA-AKIAGFEVLRL 174 (595)
T ss_pred eeecCCCeeEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCC---CcceEEEEECCCCCHHHHHHHHHH-HHHcCCCEEEE
Confidence 00111 1221 222334444544432 23332 236799999999999888887766 57789999999
Q ss_pred echhhhhhhhcCC-----ceEEEEEcCCCceEEEEee--cCee-ccccceeecCcch-h-----chh--hhcc-------
Q 020526 122 SEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVI--EGAV-QHIASRRFEVGDE-L-----AYE--KTQK------- 178 (325)
Q Consensus 122 ~~~~~~a~~~~g~-----~tglVVdiG~~~t~v~pv~--~G~~-i~~~~~~~~~ge~-~-----~~~--~~~~------- 178 (325)
+++|.||++++|. .+-+|+|+|++++.|+.+. +|.. +........+|.+ . +|- +...
T Consensus 175 i~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~ 254 (595)
T PRK01433 175 IAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQYLCNKFDLPNSIDTL 254 (595)
T ss_pred ecCcHHHHHHHhcccCCCCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 9999999999874 3568999999999987764 4421 1111112233311 1 110 0000
Q ss_pred -cCCcceEECCC-----CcEEEecceee-ccccccccCCCCCCcCCcHHHHHHHHHHhCChHHHHhccccEEEecCCCCc
Q 020526 179 -SCEIEQHTLPD-----GQVIRIGKERY-TVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSM 251 (325)
Q Consensus 179 -~~~~~~~~lpd-----~~~i~l~~e~~-~~~E~lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s~~ 251 (325)
.++...-.|.. ...+.+..+.| .+.+.+| ..+.+.|.+++.... ..=...|+|+||+|++
T Consensus 255 ~~~ekaK~~LS~~~~~~~~~~~itr~efe~l~~~l~---------~~~~~~i~~~L~~a~----~~~Id~ViLvGGssri 321 (595)
T PRK01433 255 QLAKKAKETLTYKDSFNNDNISINKQTLEQLILPLV---------ERTINIAQECLEQAG----NPNIDGVILVGGATRI 321 (595)
T ss_pred HHHHHHHHhcCCCcccccceEEEcHHHHHHHHHHHH---------HHHHHHHHHHHhhcC----cccCcEEEEECCcccC
Confidence 00000000000 01233332222 1122222 234555555555543 1225779999999999
Q ss_pred cchHHHHHHhhccCCCCcceEEeCCCCCCCCCCCceeeeehhhhhhcc
Q 020526 252 TGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKV 299 (325)
Q Consensus 252 ~G~~~rl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~l 299 (325)
|.+.+.+++.+. ..+..+.+ |..++=.||+++|..
T Consensus 322 P~v~~~l~~~f~-------~~~~~~~n------pdeaVA~GAAi~a~~ 356 (595)
T PRK01433 322 PLIKDELYKAFK-------VDILSDID------PDKAVVWGAALQAEN 356 (595)
T ss_pred hhHHHHHHHHhC-------CCceecCC------chHHHHHHHHHHHHH
Confidence 999999997761 12222233 567788888888774
No 34
>PLN03184 chloroplast Hsp70; Provisional
Probab=99.10 E-value=2.3e-09 Score=107.59 Aligned_cols=145 Identities=12% Similarity=0.061 Sum_probs=95.3
Q ss_pred eEEEEcCCCcEEEeeeCCCCCCc--------EecccceeecC-CCcccccCccccc-------------c----Cc----
Q 020526 3 AAVVDAGSKLLKAGPAIPDQAPS--------MVIPSQMKRVL-EDGSSSVDNSTLV-------------E----DV---- 52 (325)
Q Consensus 3 ~vViD~Gs~~~k~G~a~gd~~P~--------~~~ps~~~~~~-~~~~~g~~~~~~~-------------~----~~---- 52 (325)
.|=||+|+.++++++. .+..|. ..+||++.-.. ++..+| +.|... + .+
T Consensus 41 viGIDlGTt~s~va~~-~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG-~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 118 (673)
T PLN03184 41 VVGIDLGTTNSAVAAM-EGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVG-QIAKRQAVVNPENTFFSVKRFIGRKMSEVD 118 (673)
T ss_pred EEEEEeCcCcEEEEEE-ECCeEEEEECCCCCeecceEEEEcCCCCEEEC-HHHHHhhhhCchhhhHHHHHhhCCCcchhh
Confidence 5779999999999998 555554 33466664322 234556 433210 0 00
Q ss_pred ---eeccc----------------cCCeecCHHHHHHHHHHHHHh---ccCCCCCCCceEEEEcCCCCCHHHHHHHHHHh
Q 020526 53 ---TVDPV----------------VRGFIRDWDAMEDLLHHVLYA---GLGWEEGNEGQILFTDPLCSPKAVREQLVQLM 110 (325)
Q Consensus 53 ---~~~p~----------------~~g~i~d~~~~~~il~~~~~~---~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~l 110 (325)
..+|+ ....+.-.+....+|.++... .++. .-..++++.|...+..+|+.+.+.
T Consensus 119 ~~~~~~~~~v~~~~~~~v~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~---~v~~~VITVPa~f~~~qR~a~~~A- 194 (673)
T PLN03184 119 EESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLND---KVTKAVITVPAYFNDSQRTATKDA- 194 (673)
T ss_pred hhhhcCCeEEEecCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCC---CCCeEEEEECCCCCHHHHHHHHHH-
Confidence 00121 111223334455566665432 2332 236799999999999988887664
Q ss_pred hhhcCCCeEEEechhhhhhhhcCC-----ceEEEEEcCCCceEEEEee
Q 020526 111 FETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVI 153 (325)
Q Consensus 111 fe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVdiG~~~t~v~pv~ 153 (325)
.+..|+..+.++++|.||++++|. .+-+|+|+|++++.|+.+.
T Consensus 195 a~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~DvSi~~ 242 (673)
T PLN03184 195 GRIAGLEVLRIINEPTAASLAYGFEKKSNETILVFDLGGGTFDVSVLE 242 (673)
T ss_pred HHHCCCCeEEEeCcHHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEE
Confidence 477899999999999999998864 4679999999999987764
No 35
>PRK13411 molecular chaperone DnaK; Provisional
Probab=99.09 E-value=2.5e-09 Score=107.18 Aligned_cols=65 Identities=17% Similarity=0.121 Sum_probs=55.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCC------ceEEEEEcCCCceEEEEee
Q 020526 88 GQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR------ISGCTVDIGHGKIDIAPVI 153 (325)
Q Consensus 88 ~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------~tglVVdiG~~~t~v~pv~ 153 (325)
..++++.|...+..+|+.+.+. .+..|+.-+.++++|.||++++|. .+-+|+|+|++++.|+.+.
T Consensus 134 ~~~VITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~ 204 (653)
T PRK13411 134 TQAVITVPAYFTDAQRQATKDA-GTIAGLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQ 204 (653)
T ss_pred ceEEEEECCCCCcHHHHHHHHH-HHHcCCCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEE
Confidence 6799999999999999888764 577899999999999999998864 3469999999999987653
No 36
>PRK13410 molecular chaperone DnaK; Provisional
Probab=99.07 E-value=4.5e-09 Score=105.26 Aligned_cols=65 Identities=14% Similarity=0.090 Sum_probs=56.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCC-----ceEEEEEcCCCceEEEEee
Q 020526 88 GQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVI 153 (325)
Q Consensus 88 ~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVdiG~~~t~v~pv~ 153 (325)
..++++.|...+..+|+.+.+.+ +..|+.-+.++++|.||++++|. .+-+|+|+|++++.|+.+.
T Consensus 136 ~~~VITVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~Dvsv~~ 205 (668)
T PRK13410 136 TGAVITVPAYFNDSQRQATRDAG-RIAGLEVERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTFDVSLLE 205 (668)
T ss_pred ceEEEEECCCCCHHHHHHHHHHH-HHcCCCeEEEecchHHHHHHhccccCCCCEEEEEECCCCeEEEEEEE
Confidence 57999999999999998776655 78899999999999999999874 4679999999999988765
No 37
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=99.05 E-value=9.5e-09 Score=103.06 Aligned_cols=66 Identities=14% Similarity=0.112 Sum_probs=56.2
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCC-------ceEEEEEcCCCceEEEEee
Q 020526 87 EGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR-------ISGCTVDIGHGKIDIAPVI 153 (325)
Q Consensus 87 ~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-------~tglVVdiG~~~t~v~pv~ 153 (325)
-..++++.|...+..+|+.+.+ +.+..|++-+.++++|.||++++|. .+-+|+|+|++++.|+.+.
T Consensus 140 v~~~VItVPa~f~~~qR~a~~~-Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~ 212 (653)
T PTZ00009 140 VKDAVVTVPAYFNDSQRQATKD-AGTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLT 212 (653)
T ss_pred cceeEEEeCCCCCHHHHHHHHH-HHHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEE
Confidence 3679999999999988887776 4578899999999999999998853 4679999999999987764
No 38
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=98.99 E-value=2e-09 Score=89.07 Aligned_cols=201 Identities=20% Similarity=0.237 Sum_probs=122.6
Q ss_pred EEEEcCCCcEEEeeeCCCCCCcEecccceeecCCCcccccCccccccCceeccccCCeecCHHHHHHHHHH---HHHhcc
Q 020526 4 AVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVTVDPVVRGFIRDWDAMEDLLHH---VLYAGL 80 (325)
Q Consensus 4 vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~~~~~~g~~~~~~~~~~~~~p~~~g~i~d~~~~~~il~~---~~~~~l 80 (325)
+=+|+|++.+-+-.-+.+..|-...- +- -.-+++|.+.|+-..-.+.+. .+.++|
T Consensus 32 vGVDLGT~~iV~~vlD~d~~Pvag~~--------------~~--------advVRDGiVvdf~eaveiVrrlkd~lEk~l 89 (277)
T COG4820 32 VGVDLGTCDIVSMVLDRDGQPVAGCL--------------DW--------ADVVRDGIVVDFFEAVEIVRRLKDTLEKQL 89 (277)
T ss_pred EEeecccceEEEEEEcCCCCeEEEEe--------------hh--------hhhhccceEEehhhHHHHHHHHHHHHHHhh
Confidence 45788888877665545555643210 00 134567777776543333333 334566
Q ss_pred CCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCCceEEEEEcCCCceEEEEeecCeeccc
Q 020526 81 GWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHI 160 (325)
Q Consensus 81 ~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVdiG~~~t~v~pv~~G~~i~~ 160 (325)
++.. ..---..||-..... .++.--+.|+.+...+..+++|.++++-.+.++|.|||+|.+.|-|.-+-+|.++..
T Consensus 90 Gi~~---tha~taiPPGt~~~~-~ri~iNViESAGlevl~vlDEPTAaa~vL~l~dg~VVDiGGGTTGIsi~kkGkViy~ 165 (277)
T COG4820 90 GIRF---THAATAIPPGTEQGD-PRISINVIESAGLEVLHVLDEPTAAADVLQLDDGGVVDIGGGTTGISIVKKGKVIYS 165 (277)
T ss_pred CeEe---eeccccCCCCccCCC-ceEEEEeecccCceeeeecCCchhHHHHhccCCCcEEEeCCCcceeEEEEcCcEEEe
Confidence 6543 111111122211101 111123458889999999999999999999999999999999999999999999987
Q ss_pred cce-------eecCc--------chhchhhhcccCCcceEECCCCcEEEecceeeccccccccCCCCCCcCCcHHHHHHH
Q 020526 161 ASR-------RFEVG--------DELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVH 225 (325)
Q Consensus 161 ~~~-------~~~~g--------e~~~~~~~~~~~~~~~~~lpd~~~i~l~~e~~~~~E~lF~p~~~~~~~~~i~~~I~~ 225 (325)
+.. .+.++ |.++|++.... +.|-|...-..+ ..+.+.+.+
T Consensus 166 ADEpTGGtHmtLvlAG~ygi~~EeAE~~Kr~~k~----------------~~Eif~~v~PV~---------eKMAeIv~~ 220 (277)
T COG4820 166 ADEPTGGTHMTLVLAGNYGISLEEAEQYKRGHKK----------------GEEIFPVVKPVY---------EKMAEIVAR 220 (277)
T ss_pred ccCCCCceeEEEEEecccCcCHhHHHHhhhcccc----------------chhcccchhHHH---------HHHHHHHHH
Confidence 631 11111 11222211100 112222222222 457788888
Q ss_pred HHHhCChHHHHhccccEEEecCCCCccchHHHHHHhh
Q 020526 226 TISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA 262 (325)
Q Consensus 226 ~i~~~~~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL 262 (325)
.|..-++. .+.|+||.++.||+.+-++++|
T Consensus 221 hie~~~i~-------dl~lvGGac~~~g~e~~Fe~~l 250 (277)
T COG4820 221 HIEGQGIT-------DLWLVGGACMQPGVEELFEKQL 250 (277)
T ss_pred HhccCCCc-------ceEEecccccCccHHHHHHHHh
Confidence 88877653 3899999999999999999999
No 39
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=98.79 E-value=4.2e-07 Score=85.36 Aligned_cols=165 Identities=19% Similarity=0.232 Sum_probs=92.5
Q ss_pred CHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCC-----ceEEEEEcCCCceEEEEeecCeeccccceeecCcch---
Q 020526 99 PKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGDE--- 170 (325)
Q Consensus 99 ~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVdiG~~~t~v~pv~~G~~i~~~~~~~~~ge~--- 170 (325)
++...+.+.+ +++..++.-+.+..+|+++++++.. ...+|||+|+++|.++.+.+|.+.. ...+++|.+
T Consensus 156 ~~~~v~~~~~-~~~~aGl~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~~--~~~i~~GG~~it 232 (371)
T TIGR01174 156 SSTILRNLVK-CVERCGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIRY--TKVIPIGGNHIT 232 (371)
T ss_pred EHHHHHHHHH-HHHHcCCCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEEE--EeeecchHHHHH
Confidence 3444445544 4578899999999999999987642 3469999999999999999998765 355677732
Q ss_pred --------hchhhhcccCCc-ceEEC----CCCcEEEecc----eeeccccccccCCCCCCcCCcHHHHHH-HHHHhCCh
Q 020526 171 --------LAYEKTQKSCEI-EQHTL----PDGQVIRIGK----ERYTVGEALFQPSILGLEAHGIVEQLV-HTISTVSS 232 (325)
Q Consensus 171 --------~~~~~~~~~~~~-~~~~l----pd~~~i~l~~----e~~~~~E~lF~p~~~~~~~~~i~~~I~-~~i~~~~~ 232 (325)
..++..+ .... ..... +....+.+.. ....+....|..- +......+.+.|. +.+++.+.
T Consensus 233 ~~i~~~l~~~~~~AE-~lK~~~~~~~~~~~~~~~~i~~~~~~~~~~~~is~~~l~~i-i~~~~~ei~~~i~~~~L~~~~~ 310 (371)
T TIGR01174 233 KDIAKALRTPLEEAE-RIKIKYGCASIPLEGPDENIEIPSVGERPPRSLSRKELAEI-IEARAEEILEIVKQKELRKSGF 310 (371)
T ss_pred HHHHHHhCCCHHHHH-HHHHHeeEecccCCCCCCEEEeccCCCCCCeEEcHHHHHHH-HHHHHHHHHHHHHHHHHHhcCC
Confidence 0111000 0000 00000 0111222210 0111111111000 0000134555554 66655544
Q ss_pred HHHHhcccc-EEEecCCCCccchHHHHHHhhccCCCCcceEEeCC
Q 020526 233 ENHRQLLEN-TVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKP 276 (325)
Q Consensus 233 d~r~~l~~n-Iil~GG~s~~~G~~~rl~~eL~~~~~~~~v~v~~~ 276 (325)
+ . -..+ |+||||+|++||+.+++.+.+ ..++++..|
T Consensus 311 ~--~-~i~~gIvLtGG~S~ipgi~~~l~~~~-----~~~vr~~~P 347 (371)
T TIGR01174 311 K--E-ELNGGIVLTGGGAQLEGIVELAEKVF-----DNPVRIGLP 347 (371)
T ss_pred c--c-cCCCEEEEeChHHcccCHHHHHHHHh-----CCCeEEECC
Confidence 3 2 2345 999999999999999999998 334555543
No 40
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=98.78 E-value=5e-08 Score=97.37 Aligned_cols=186 Identities=18% Similarity=0.267 Sum_probs=109.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCC------ceEEEEEcCCCceEEEEee--cCee-c
Q 020526 88 GQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR------ISGCTVDIGHGKIDIAPVI--EGAV-Q 158 (325)
Q Consensus 88 ~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------~tglVVdiG~~~t~v~pv~--~G~~-i 158 (325)
..++++.|...+..+|+.+.+.+ +..|++.+.++++|.||+++++. .+-+|+|+|++++.++.+. +|.. +
T Consensus 136 ~~~vitVPa~~~~~qr~~~~~Aa-~~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v 214 (602)
T PF00012_consen 136 TDVVITVPAYFTDEQRQALRDAA-ELAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEV 214 (602)
T ss_dssp EEEEEEE-TT--HHHHHHHHHHH-HHTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEE
T ss_pred ccceeeechhhhhhhhhcccccc-cccccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccc
Confidence 56899999999999888887666 67899999999999999987753 4679999999999888764 4432 1
Q ss_pred cccceeecCcch-------------------hch-------h---------hh-ccc--CCcceEE----CCCCcE--EE
Q 020526 159 HIASRRFEVGDE-------------------LAY-------E---------KT-QKS--CEIEQHT----LPDGQV--IR 194 (325)
Q Consensus 159 ~~~~~~~~~ge~-------------------~~~-------~---------~~-~~~--~~~~~~~----lpd~~~--i~ 194 (325)
........+|.+ .+. . |. ... .....+. ..++.. +.
T Consensus 215 ~~~~~~~~lGG~~~D~~l~~~~~~~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~~~~~~~~ 294 (602)
T PF00012_consen 215 LATAGDNNLGGRDFDEALAEYLLEKFKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDDGEDFSIT 294 (602)
T ss_dssp EEEEEETTCSHHHHHHHHHHHHHHHHHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETTTEEEEEE
T ss_pred cccccccccccceecceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 122233455511 000 0 00 011 0001111 111322 22
Q ss_pred ecceee-ccccccccCCCCCCcCCcHHHHHHHHHHhCChHHHHhccccEEEecCCCCccchHHHHHHhhccCCCCcceEE
Q 020526 195 IGKERY-TVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTL 273 (325)
Q Consensus 195 l~~e~~-~~~E~lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL~~~~~~~~v~v 273 (325)
+..+.| .+.+.++ ..+.++|.+++...... ..=...|+|+||+|.+|-+.++|++.+. -.+
T Consensus 295 itr~~fe~l~~~~~---------~~~~~~i~~~l~~~~~~--~~~i~~V~lvGG~sr~p~v~~~l~~~f~-------~~~ 356 (602)
T PF00012_consen 295 ITREEFEELCEPLL---------ERIIEPIEKALKDAGLK--KEDIDSVLLVGGSSRIPYVQEALKELFG-------KKI 356 (602)
T ss_dssp EEHHHHHHHTHHHH---------HHTHHHHHHHHHHTT----GGGESEEEEESGGGGSHHHHHHHHHHTT-------SEE
T ss_pred cccceecccccccc---------ccccccccccccccccc--ccccceeEEecCcccchhhhhhhhhccc-------ccc
Confidence 222222 1222233 34667777777765432 3335679999999999999999987761 133
Q ss_pred eCCCCCCCCCCCceeeeehhhhhhc
Q 020526 274 VKPPEYMPENLTLYSAWIGGAILAK 298 (325)
Q Consensus 274 ~~~~~~~~~~~~~~~~W~G~si~a~ 298 (325)
....+ |..+.=.||+++|.
T Consensus 357 ~~~~~------p~~aVA~GAa~~a~ 375 (602)
T PF00012_consen 357 SKSVN------PDEAVARGAALYAA 375 (602)
T ss_dssp B-SS-------TTTHHHHHHHHHHH
T ss_pred ccccc------cccccccccccchh
Confidence 33333 56778899999886
No 41
>PRK11678 putative chaperone; Provisional
Probab=98.69 E-value=6.5e-07 Score=85.76 Aligned_cols=66 Identities=17% Similarity=0.149 Sum_probs=53.8
Q ss_pred ceEEEEcCCCCC-----HHHHHH--HHHHhhhhcCCCeEEEechhhhhhhhcCC-----ceEEEEEcCCCceEEEEee
Q 020526 88 GQILFTDPLCSP-----KAVREQ--LVQLMFETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVI 153 (325)
Q Consensus 88 ~~vll~~~~~~~-----~~~r~~--l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVdiG~~~t~v~pv~ 153 (325)
..+|++.|.... ..+|+. .+.-..+..|++.+.++++|.+|++++|. .+-+|+|+|++++.++-|-
T Consensus 150 ~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~~~~~vlV~D~GGGT~D~Svv~ 227 (450)
T PRK11678 150 TQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLTEEKRVLVVDIGGGTTDCSMLL 227 (450)
T ss_pred CcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccCCCCeEEEEEeCCCeEEEEEEE
Confidence 678999998765 555544 34566788999999999999999999873 5679999999999887764
No 42
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=98.65 E-value=1.5e-07 Score=89.75 Aligned_cols=185 Identities=19% Similarity=0.254 Sum_probs=110.9
Q ss_pred HHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCC-----ceEEEEEcCCCceEEEEeecCeeccccceeecCcch----
Q 020526 100 KAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGDE---- 170 (325)
Q Consensus 100 ~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVdiG~~~t~v~pv~~G~~i~~~~~~~~~ge~---- 170 (325)
....+.+.+ +++..++.-..++.+|++++.+... ...+|||+|+++|.++-+.+|.++.. ..+++|..
T Consensus 165 ~~~~~~~~~-a~~~aGl~v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~~G~l~~~--~~i~~GG~~it~ 241 (420)
T PRK09472 165 NDMAKNIVK-AVERCGLKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGGALRHT--KVIPYAGNVVTS 241 (420)
T ss_pred hHHHHHHHH-HHHHcCCeEeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEECCEEEEE--eeeechHHHHHH
Confidence 445555655 6688999999999999999998753 34689999999999999999987754 45556621
Q ss_pred -h------chhhhcccCC-cceEEC----CCCcEEEecc----e-----eeccccccccCCCCCCcCCcHHHHHHHHHHh
Q 020526 171 -L------AYEKTQKSCE-IEQHTL----PDGQVIRIGK----E-----RYTVGEALFQPSILGLEAHGIVEQLVHTIST 229 (325)
Q Consensus 171 -~------~~~~~~~~~~-~~~~~l----pd~~~i~l~~----e-----~~~~~E~lF~p~~~~~~~~~i~~~I~~~i~~ 229 (325)
. .+...+ ... .....+ .+...+.+.. . +....+++... -..|.+.|.+++..
T Consensus 242 dIa~~l~i~~~~AE-~lK~~~g~~~~~~~~~~~~i~v~~~~~~~~~~i~~~~l~~ii~~r------~~ei~~~i~~~l~~ 314 (420)
T PRK09472 242 DIAYAFGTPPSDAE-AIKVRHGCALGSIVGKDESVEVPSVGGRPPRSLQRQTLAEVIEPR------YTELLNLVNEEILQ 314 (420)
T ss_pred HHHHHhCcCHHHHH-HHHHhcceeccccCCCCceeEecCCCCCCCeEEcHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 0 111000 000 000000 1112222210 0 11111221111 12455667777777
Q ss_pred CChHHHHh-----ccccEEEecCCCCccchHHHHHHhhccCCCCcceEEeCCCCCCC----CCCCceeeeehhhhhhcc
Q 020526 230 VSSENHRQ-----LLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMP----ENLTLYSAWIGGAILAKV 299 (325)
Q Consensus 230 ~~~d~r~~-----l~~nIil~GG~s~~~G~~~rl~~eL~~~~~~~~v~v~~~~~~~~----~~~~~~~~W~G~si~a~l 299 (325)
++..++.. +-..|+||||+|++||+.+.+++.+ ..++++-.|..... ...|.|++=.|..+|+.-
T Consensus 315 ~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f-----~~~vri~~P~~~~g~~~~~~~P~~ata~Gl~~~~~~ 388 (420)
T PRK09472 315 LQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVF-----HTQVRIGAPLNITGLTDYAQEPYYSTAVGLLHYGKE 388 (420)
T ss_pred HHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHh-----CCCeEEeCCcccCCChhhcCCcHHHHHHHHHHHhhh
Confidence 77766544 4455999999999999999999888 23445543322100 124788888998888763
No 43
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=98.64 E-value=3.1e-07 Score=85.20 Aligned_cols=103 Identities=14% Similarity=0.109 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHhccCCC-CCCCceEEE--EcCCCCC-HHHHHHHHHHhhhh-----------cCCCeEEEechhhhhhh
Q 020526 66 DAMEDLLHHVLYAGLGWE-EGNEGQILF--TDPLCSP-KAVREQLVQLMFET-----------FNISGFYSSEQAVLSLY 130 (325)
Q Consensus 66 ~~~~~il~~~~~~~l~~~-~~~~~~vll--~~~~~~~-~~~r~~l~~~lfe~-----------~~~~~v~~~~~~~~a~~ 130 (325)
+..+.++..++...+... ......+++ .-|.-.- ...++++.+.+-.. ..+..|.+++|++.|++
T Consensus 88 ~~y~~L~~~Al~~~~~~~~~~~~~~v~l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~ 167 (344)
T PRK13917 88 KQFKTLVKCALAGLAARTVPEEVVEVVVATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLL 167 (344)
T ss_pred hhHHHHHHHHHHHhhhhhcCCCcceeEEEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHH
Confidence 457778777763322111 102233333 4443321 22235555544221 45678999999999987
Q ss_pred hcCC-------------ceEEEEEcCCCceEEEEeecCeeccccceeecCc
Q 020526 131 AVGR-------------ISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVG 168 (325)
Q Consensus 131 ~~g~-------------~tglVVdiG~~~t~v~pv~~G~~i~~~~~~~~~g 168 (325)
.... ..-+|||+|+.+|.++.+.++.+.......++.|
T Consensus 168 ~~~~~~~g~~~~~~~~~~~ilvIDIG~~TtD~~v~~~~~~~~~~s~s~~~G 218 (344)
T PRK13917 168 DLYLDNDGVVADKAFEEGKVSVIDFGSGTTDLDTIQNLKRVEEESFVIPKG 218 (344)
T ss_pred HHHhcccCcccchhcccCcEEEEEcCCCcEEEEEEeCcEEcccccccccch
Confidence 5421 2459999999999999999999988877778888
No 44
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=1e-05 Score=79.93 Aligned_cols=147 Identities=15% Similarity=0.091 Sum_probs=93.5
Q ss_pred ceEEEEcCCCcEEEeeeCCCC-CCc--------EecccceeecCCC-cccccCccccc-----cC--cee-cccc-----
Q 020526 2 EAAVVDAGSKLLKAGPAIPDQ-APS--------MVIPSQMKRVLED-GSSSVDNSTLV-----ED--VTV-DPVV----- 58 (325)
Q Consensus 2 ~~vViD~Gs~~~k~G~a~gd~-~P~--------~~~ps~~~~~~~~-~~~g~~~~~~~-----~~--~~~-~p~~----- 58 (325)
.+|=||+|+.++-+.+. ... .|. ..+||++.-..+. ..+| ..+... .+ +.. +-+.
T Consensus 6 ~~iGIDlGTTNS~vA~~-~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG-~~A~~q~~~~p~~t~~~~kr~~G~~~~~ 83 (579)
T COG0443 6 KAIGIDLGTTNSVVAVM-RGGGLPKVIENAEGERLTPSVVAFSKNGEVLVG-QAAKRQAVDNPENTIFSIKRKIGRGSNG 83 (579)
T ss_pred eEEEEEcCCCcEEEEEE-eCCCCceEecCCCCCcccceEEEECCCCCEEec-HHHHHHhhhCCcceEEEEehhcCCCCCC
Confidence 36889999999999999 433 343 3445665544343 5666 333111 10 111 1111
Q ss_pred -------CCeecCHH-HHHHHHHHHH---HhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhh
Q 020526 59 -------RGFIRDWD-AMEDLLHHVL---YAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVL 127 (325)
Q Consensus 59 -------~g~i~d~~-~~~~il~~~~---~~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~ 127 (325)
.|.....+ ....++.++- ...++. .-..++++.|......+|+.+.+. .+..|++-+.++++|.+
T Consensus 84 ~~~~~~~~~~~~~~eeisa~~L~~lk~~ae~~lg~---~v~~~VItVPayF~d~qR~at~~A-~~iaGl~vlrlinEPtA 159 (579)
T COG0443 84 LKISVEVDGKKYTPEEISAMILTKLKEDAEAYLGE---KVTDAVITVPAYFNDAQRQATKDA-ARIAGLNVLRLINEPTA 159 (579)
T ss_pred CcceeeeCCeeeCHHHHHHHHHHHHHHHHHHhhCC---CcceEEEEeCCCCCHHHHHHHHHH-HHHcCCCeEEEecchHH
Confidence 12222222 2223333321 123333 448899999999998887666554 46789999999999999
Q ss_pred hhhhcCC-----ceEEEEEcCCCceEEEEeec
Q 020526 128 SLYAVGR-----ISGCTVDIGHGKIDIAPVIE 154 (325)
Q Consensus 128 a~~~~g~-----~tglVVdiG~~~t~v~pv~~ 154 (325)
|++++|. .+-+|+|+|++++.++-|-=
T Consensus 160 AAlayg~~~~~~~~vlV~DlGGGTfDvSll~~ 191 (579)
T COG0443 160 AALAYGLDKGKEKTVLVYDLGGGTFDVSLLEI 191 (579)
T ss_pred HHHHhHhccCCCcEEEEEEcCCCCEEEEEEEE
Confidence 9999974 46799999999999988753
No 45
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=98.36 E-value=3e-06 Score=78.68 Aligned_cols=116 Identities=16% Similarity=0.328 Sum_probs=62.8
Q ss_pred eEEEEEcCCCceEEEEeecCeeccccceeecCcch-----------hchhhhcccCCcceEECCCCcEEEecceeecccc
Q 020526 136 SGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGDE-----------LAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGE 204 (325)
Q Consensus 136 tglVVdiG~~~t~v~pv~~G~~i~~~~~~~~~ge~-----------~~~~~~~~~~~~~~~~lpd~~~i~l~~e~~~~~E 204 (325)
+-++||+|+..|.++-+.+|.++.. +.+++|.+ .++.+.... .....+++. ....+-+
T Consensus 181 ~~~lvdiG~~~t~~~i~~~g~~~f~--R~i~~G~~~l~~~i~~~~~i~~~~Ae~~--k~~~~l~~~-------~~~~~l~ 249 (340)
T PF11104_consen 181 TVALVDIGASSTTVIIFQNGKPIFS--RSIPIGGNDLTEAIARELGIDFEEAEEL--KRSGGLPEE-------YDQDALR 249 (340)
T ss_dssp EEEEEEE-SS-EEEEEEETTEEEEE--EEES-SHHHHHHHHHHHTT--HHHHHHH--HHHT-------------HHHHHH
T ss_pred eEEEEEecCCeEEEEEEECCEEEEE--EEEeeCHHHHHHHHHHhcCCCHHHHHHH--HhcCCCCcc-------hHHHHHH
Confidence 4589999999999999999998865 56677722 122211100 011112220 0011111
Q ss_pred ccccCCCCCCcCCcHHHHHHHHHHhCChHHHHhccccEEEecCCCCccchHHHHHHhhccCCCCcceEEeCC
Q 020526 205 ALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKP 276 (325)
Q Consensus 205 ~lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL~~~~~~~~v~v~~~ 276 (325)
.++ ..|..-|.++++-.-......-.+.|+|+||++.++|+.+.|+++| ++++.+..+
T Consensus 250 ~~~---------~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l-----~~~v~~~~p 307 (340)
T PF11104_consen 250 PFL---------EELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEEL-----GIPVEVINP 307 (340)
T ss_dssp HHH---------HHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHH-----TSEEEE--G
T ss_pred HHH---------HHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHH-----CCceEEcCh
Confidence 122 2456666666654433334445778999999999999999999999 556666544
No 46
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=98.34 E-value=1.9e-06 Score=79.20 Aligned_cols=100 Identities=14% Similarity=0.076 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhh--------cCCCeEEEechhhhhhhhc-----
Q 020526 66 DAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFET--------FNISGFYSSEQAVLSLYAV----- 132 (325)
Q Consensus 66 ~~~~~il~~~~~~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~--------~~~~~v~~~~~~~~a~~~~----- 132 (325)
+....++.+++.. .+.+ ....+++.-|...-...|+.+.+.+-.. ..+..|.++||++.|.+..
T Consensus 84 ~~~~~L~~~Al~~-~~~~--~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~ 160 (320)
T TIGR03739 84 PEYMALLRGALAL-SKVR--EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHG 160 (320)
T ss_pred HHHHHHHHHHHHH-hcCC--CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCC
Confidence 3567777777754 2222 2224666656555466777777776532 5778899999999887754
Q ss_pred ----CCceEEEEEcCCCceEEEEeecCeeccccceeecCc
Q 020526 133 ----GRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVG 168 (325)
Q Consensus 133 ----g~~tglVVdiG~~~t~v~pv~~G~~i~~~~~~~~~g 168 (325)
...+.+|||+|+.+|.++.+-++.+.......++.|
T Consensus 161 ~~~~~~~~~lVIDIG~~TtD~~~~~~~~~~~~~s~s~~~G 200 (320)
T TIGR03739 161 KLLTGKEQSLIIDPGYFTFDWLVARGMRLVQKRSGSVNGG 200 (320)
T ss_pred CcccCcCcEEEEecCCCeeeeehccCCEEcccccCCchhH
Confidence 234569999999999999888888877766667777
No 47
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=98.23 E-value=0.0002 Score=66.56 Aligned_cols=143 Identities=17% Similarity=0.234 Sum_probs=80.9
Q ss_pred CHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhc----------C-Cc-eEEEEEcCCCceEEEEeecCeeccccceeec
Q 020526 99 PKAVREQLVQLMFETFNISGFYSSEQAVLSLYAV----------G-RI-SGCTVDIGHGKIDIAPVIEGAVQHIASRRFE 166 (325)
Q Consensus 99 ~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~----------g-~~-tglVVdiG~~~t~v~pv~~G~~i~~~~~~~~ 166 (325)
++...+.+.++ |+..++.-..+..++++.+-+. . .. +.++||+|+++|+++.+.+|.++.. +.++
T Consensus 141 ~~~~v~~~~~~-~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~~~--r~i~ 217 (348)
T TIGR01175 141 RKEVVDSRLHA-LKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRMLFT--REVP 217 (348)
T ss_pred cHHHHHHHHHH-HHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEEEE--EEee
Confidence 56666666665 5777877777777776654332 1 22 4899999999999999999988875 4555
Q ss_pred Ccch-----------hchhhhcccCCcceEECCCCcEEEecceeeccccccccCCCCCCcCCcHHHHHHHHHHhCChHHH
Q 020526 167 VGDE-----------LAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENH 235 (325)
Q Consensus 167 ~ge~-----------~~~~~~~~~~~~~~~~lpd~~~i~l~~e~~~~~E~lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r 235 (325)
+|.. .+++.... . ...+..++.. ...+.+..+ ..+..-|.+++.-.-....
T Consensus 218 ~G~~~i~~~i~~~~~~~~~~Ae~-~-k~~~~~~~~~-------~~~~~~~~~---------~~l~~eI~~~l~~~~~~~~ 279 (348)
T TIGR01175 218 FGTRQLTSELSRAYGLNPEEAGE-A-KQQGGLPLLY-------DPEVLRRFK---------GELVDEIRRSLQFFTAQSG 279 (348)
T ss_pred chHHHHHHHHHHHcCCCHHHHHH-H-HhcCCCCCch-------hHHHHHHHH---------HHHHHHHHHHHHhhcCCCC
Confidence 6622 11111100 0 0000010000 000000000 1234444444432211122
Q ss_pred HhccccEEEecCCCCccchHHHHHHhh
Q 020526 236 RQLLENTVLCGGTTSMTGFEDRFQKEA 262 (325)
Q Consensus 236 ~~l~~nIil~GG~s~~~G~~~rl~~eL 262 (325)
....+.|+||||++.++||.+.|++++
T Consensus 280 ~~~i~~I~LtGgga~~~gl~~~l~~~l 306 (348)
T TIGR01175 280 TNSLDGLVLAGGGATLSGLDAAIYQRL 306 (348)
T ss_pred CcccceEEEECccccchhHHHHHHHHH
Confidence 223567999999999999999999999
No 48
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=97.79 E-value=0.00011 Score=69.18 Aligned_cols=184 Identities=21% Similarity=0.257 Sum_probs=103.2
Q ss_pred CHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcC-----CceEEEEEcCCCceEEEEeecCeeccccceeecCcch---
Q 020526 99 PKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVG-----RISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGDE--- 170 (325)
Q Consensus 99 ~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g-----~~tglVVdiG~~~t~v~pv~~G~~i~~~~~~~~~ge~--- 170 (325)
+...-+.+.+ ++|+.+..-..++-+|++++.+.= .-.+++||+|+++|+|..+.+|.+.... .+++|..
T Consensus 163 ~~~~~~Nl~k-~v~r~gl~v~~i~l~plAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~~G~l~~~~--~ipvgG~~vT 239 (418)
T COG0849 163 PKNILENLEK-CVERAGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKNGALRYTG--VIPVGGDHVT 239 (418)
T ss_pred chHHHHHHHH-HHHHhCCCeeeEEEehhhhhhhccCcccHhcCeEEEEeCCCcEEEEEEECCEEEEEe--eEeeCccHHH
Confidence 3444455554 448888888888889999887763 3478999999999999999999988764 4566622
Q ss_pred --------hchhhhcccCC----cceEEC-CCCcEEEec---c------eeeccccccccCCCCCCcCCcHHHHHHHHHH
Q 020526 171 --------LAYEKTQKSCE----IEQHTL-PDGQVIRIG---K------ERYTVGEALFQPSILGLEAHGIVEQLVHTIS 228 (325)
Q Consensus 171 --------~~~~~~~~~~~----~~~~~l-pd~~~i~l~---~------e~~~~~E~lF~p~~~~~~~~~i~~~I~~~i~ 228 (325)
..++..+ +.. ...+.+ .+...+.+. . .+..+.++.- ...+.+.+++.+.|+
T Consensus 240 ~DIa~~l~t~~~~AE-~iK~~~g~a~~~~~~~~~~i~v~~vg~~~~~~~t~~~ls~II~------aR~~Ei~~lV~~~l~ 312 (418)
T COG0849 240 KDIAKGLKTPFEEAE-RIKIKYGSALISLADDEETIEVPSVGSDIPRQVTRSELSEIIE------ARVEEILELVKAELR 312 (418)
T ss_pred HHHHHHhCCCHHHHH-HHHHHcCccccCcCCCcceEecccCCCcccchhhHHHHHHHHH------hhHHHHHHHHHHHHH
Confidence 1111100 000 000000 111111110 0 0111111110 011334445555555
Q ss_pred hCChHHHHhccccEEEecCCCCccchHHHHHHhhccCCCCcceEEeCCCCCCC----CCCCceeeeehhhhhhcc
Q 020526 229 TVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMP----ENLTLYSAWIGGAILAKV 299 (325)
Q Consensus 229 ~~~~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL~~~~~~~~v~v~~~~~~~~----~~~~~~~~W~G~si~a~l 299 (325)
+.-.. ..+-+.|+||||++++||+.+--++-+. .++++-.|-.+.- ...|.|++=.|.-.++..
T Consensus 313 ~~g~~--~~~~~gvVlTGG~a~l~Gi~elA~~if~-----~~vRig~P~~~~Gl~d~~~~p~fs~avGl~~~~~~ 380 (418)
T COG0849 313 KSGLP--NHLPGGVVLTGGGAQLPGIVELAERIFG-----RPVRLGVPLNIVGLTDIARNPAFSTAVGLLLYGAL 380 (418)
T ss_pred HcCcc--ccCCCeEEEECchhcCccHHHHHHHhcC-----CceEeCCCccccCchhhccCchhhhhHHHHHHHhh
Confidence 54322 5567789999999999999987776551 2333322211110 012789999999888885
No 49
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.58 E-value=0.0018 Score=58.21 Aligned_cols=119 Identities=23% Similarity=0.363 Sum_probs=71.4
Q ss_pred EEEEEcCCCceEEEEeecCeeccccceeecCcch-----------hchhhhcccCCcceEECCCCcEEEecceeeccccc
Q 020526 137 GCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGDE-----------LAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEA 205 (325)
Q Consensus 137 glVVdiG~~~t~v~pv~~G~~i~~~~~~~~~ge~-----------~~~~~~~~~~~~~~~~lpd~~~i~l~~e~~~~~E~ 205 (325)
.+|+|||+..|.++-+.+|+++.. +..++|.+ +++.+..+ .+..+.+|+.... |.
T Consensus 195 vav~~Igat~s~l~vi~~gk~ly~--r~~~~g~~Qlt~~i~r~~~L~~~~a~~--~k~~~~~P~~y~~----------~v 260 (354)
T COG4972 195 VAVFDIGATSSELLVIQDGKILYT--REVPVGTDQLTQEIQRAYSLTEEKAEE--IKRGGTLPTDYGS----------EV 260 (354)
T ss_pred heeeeecccceEEEEEECCeeeeE--eeccCcHHHHHHHHHHHhCCChhHhHH--HHhCCCCCCchhH----------HH
Confidence 358999999999999999999986 66677733 12222111 1244555552110 00
Q ss_pred cccCCCCCCcCCcHHHHHHHHHHhCChHHHHhccccEEEecCCCCccchHHHHHHhhccCCCCcceEEeCCCCCC
Q 020526 206 LFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYM 280 (325)
Q Consensus 206 lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL~~~~~~~~v~v~~~~~~~ 280 (325)
+ .| ....|.+-|.++|+-.=.----.-...|+|+||++.+.|+.+.+++.| ++++.+.+|-.+|
T Consensus 261 l-~~-----f~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl-----~~~t~vanPf~~~ 324 (354)
T COG4972 261 L-RP-----FLGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRL-----SIPTEVANPFAYM 324 (354)
T ss_pred H-HH-----HHHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHh-----CCCeEeeCHHHHH
Confidence 0 00 013466666666654211001112456999999999999999999999 4555555554333
No 50
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.007 Score=59.90 Aligned_cols=66 Identities=17% Similarity=0.118 Sum_probs=57.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCC----------ceEEEEEcCCCceEEEEee
Q 020526 87 EGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR----------ISGCTVDIGHGKIDIAPVI 153 (325)
Q Consensus 87 ~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~----------~tglVVdiG~~~t~v~pv~ 153 (325)
=..++++.|++....+|+.+++.. +-.|..-++++++..++++.+|. +.-++-|+|.++|.++-|.
T Consensus 158 Ikd~ViTVP~~F~qaeR~all~Aa-~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativs 233 (902)
T KOG0104|consen 158 IKDMVITVPPFFNQAERRALLQAA-QIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVS 233 (902)
T ss_pred hhheEEeCCcccCHHHHHHHHHHH-HhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEE
Confidence 467899999999999999998876 55788899999999999998873 3558889999999998885
No 51
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=97.14 E-value=0.009 Score=52.86 Aligned_cols=42 Identities=24% Similarity=0.471 Sum_probs=31.3
Q ss_pred cEEEecCCCCccchHHHHHHhhccCCCCcceEEeCCCCCCCCCCCceeeeehhhh
Q 020526 241 NTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAI 295 (325)
Q Consensus 241 nIil~GG~s~~~G~~~rl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si 295 (325)
.|+++||.+..+++.+++.+.| ...+..+++ +.+.+=+|+++
T Consensus 206 ~Vvl~GGva~n~~l~~~l~~~l-------g~~v~~~~~------~~~~~AlGaAl 247 (248)
T TIGR00241 206 PIVFTGGVSKNKGLVKALEKKL-------GMKVITPPE------PQIVGAVGAAL 247 (248)
T ss_pred CEEEECccccCHHHHHHHHHHh-------CCcEEcCCC------ccHHHHHHHHh
Confidence 6999999999999999999988 223443444 45666667665
No 52
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=97.12 E-value=0.009 Score=54.87 Aligned_cols=44 Identities=25% Similarity=0.343 Sum_probs=39.6
Q ss_pred EEEecCCCCccchHHHHHHhhccCCCCcceEEeCCCCCCCCCCCceeeeehhhhhhc
Q 020526 242 TVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAK 298 (325)
Q Consensus 242 Iil~GG~s~~~G~~~rl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~ 298 (325)
|+++||++...++.+.|++.| ..+|+.||. +++..=+||+++++
T Consensus 346 iv~~GGva~n~av~~ale~~l-------g~~V~vP~~------~ql~GAiGAAL~a~ 389 (396)
T COG1924 346 IVLQGGVALNKAVVRALEDLL-------GRKVIVPPY------AQLMGAIGAALIAK 389 (396)
T ss_pred EEEECcchhhHHHHHHHHHHh-------CCeeecCCc------cchhhHHHHHHHHh
Confidence 999999999999999999998 457777887 88889999999987
No 53
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=96.89 E-value=0.0068 Score=56.72 Aligned_cols=49 Identities=27% Similarity=0.415 Sum_probs=39.4
Q ss_pred hccccEEEecCCCCccchHHHHHHhhccCCCCcceEEeCCCCCCCCCCCceeeeehhhhhhc
Q 020526 237 QLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAK 298 (325)
Q Consensus 237 ~l~~nIil~GG~s~~~G~~~rl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~ 298 (325)
.+-+.|+++||.+..+|+.+.|++.| ..+++-+++ +++..=+||+++|+
T Consensus 354 ~i~~~VvftGGva~N~gvv~ale~~L-------g~~iivPe~------pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 354 DVREPVILVGGTSLIEGLVKALGDLL-------GIEVVVPEY------SQYIGAVGAALLAS 402 (404)
T ss_pred CCCCcEEEECChhhhHHHHHHHHHHh-------CCcEEECCc------ccHHHHHHHHHHhc
Confidence 34455999999999999999999998 334544555 78888999999985
No 54
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=96.79 E-value=0.013 Score=52.60 Aligned_cols=49 Identities=16% Similarity=0.246 Sum_probs=38.4
Q ss_pred hccccEEEecCCCCccchHHHHHHhhccCCCCcceEEe-CCCCCCCCCCCceeeeehhhhhhc
Q 020526 237 QLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLV-KPPEYMPENLTLYSAWIGGAILAK 298 (325)
Q Consensus 237 ~l~~nIil~GG~s~~~G~~~rl~~eL~~~~~~~~v~v~-~~~~~~~~~~~~~~~W~G~si~a~ 298 (325)
.+-.+|+++||.+..+|+.+.|+++| ..++. .+++ |++..=+||+++|.
T Consensus 238 ~i~~~v~~~GGva~N~~l~~al~~~L-------g~~v~~~p~~------p~~~GAlGAAL~A~ 287 (293)
T TIGR03192 238 GVEEGFFITGGIAKNPGVVKRIERIL-------GIKAVDTKID------SQIAGALGAALFGY 287 (293)
T ss_pred CCCCCEEEECcccccHHHHHHHHHHh-------CCCceeCCCC------ccHHHHHHHHHHHH
Confidence 45567999999999999999999999 22333 2334 67888899999984
No 55
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=96.77 E-value=0.13 Score=49.01 Aligned_cols=149 Identities=16% Similarity=0.189 Sum_probs=77.9
Q ss_pred eEEEEcCCCcEEEeeeC---CCCCCcEecccceeecCCCcccccCcccccc-CceeccccCCeecCHHHHHHHHHHHHHh
Q 020526 3 AAVVDAGSKLLKAGPAI---PDQAPSMVIPSQMKRVLEDGSSSVDNSTLVE-DVTVDPVVRGFIRDWDAMEDLLHHVLYA 78 (325)
Q Consensus 3 ~vViD~Gs~~~k~G~a~---gd~~P~~~~ps~~~~~~~~~~~g~~~~~~~~-~~~~~p~~~g~i~d~~~~~~il~~~~~~ 78 (325)
.|=||+||.+|.+=||. .+..+.+..|-+. +- |.--..+ +.-..|+.....-|-+.++.+++.-|.+
T Consensus 8 SVGIDIGTsTTqlvfSrl~l~n~a~~~~vpr~~--------I~-dkev~yrS~i~fTPl~~~~~ID~~~i~~~V~~ey~~ 78 (475)
T PRK10719 8 SVGIDIGTTTTQVIFSRLELENRASVFQVPRIE--------II-DKEIIYRSPIYFTPLLKQGEIDEAAIKELIEEEYQK 78 (475)
T ss_pred EEEEeccCceEEEEEEEEEEecccccccCceEE--------Ee-eeEEEEecCceecCCCCCccccHHHHHHHHHHHHHH
Confidence 46799999999998883 1111111111111 11 1100000 2224688777778999999999988854
Q ss_pred ccCCCC-CCCce-EEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEe-------chhhhhhhhcC--------CceEEEEE
Q 020526 79 GLGWEE-GNEGQ-ILFTDPLCSPKAVREQLVQLMFETFNISGFYSS-------EQAVLSLYAVG--------RISGCTVD 141 (325)
Q Consensus 79 ~l~~~~-~~~~~-vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~-------~~~~~a~~~~g--------~~tglVVd 141 (325)
-++.+ +-+.. .+++-... .++.+.+++ ++++...=-|+ -+.+++.+++| ....++||
T Consensus 79 -Agi~~~die~~ahIITg~~~----~~~Nl~~~v-~~~~~~~gdfVVA~AG~~le~iva~~ASg~avLseEke~gVa~ID 152 (475)
T PRK10719 79 -AGIAPESIDSGAVIITGETA----RKENAREVV-MALSGSAGDFVVATAGPDLESIIAGKGAGAQTLSEERNTRVLNID 152 (475)
T ss_pred -cCCCHHHccccEEEEEechh----HHHHHHHHH-HHhcccccceeeeccCccHHHhhhHHHhhHHHhhhhccCceEEEE
Confidence 45555 11222 23332222 222222222 32221111111 11122222222 24568999
Q ss_pred cCCCceEEEEeecCeeccccceeecCc
Q 020526 142 IGHGKIDIAPVIEGAVQHIASRRFEVG 168 (325)
Q Consensus 142 iG~~~t~v~pv~~G~~i~~~~~~~~~g 168 (325)
||+++|+++.+.+|.++... .+++|
T Consensus 153 IGgGTT~iaVf~~G~l~~T~--~l~vG 177 (475)
T PRK10719 153 IGGGTANYALFDAGKVIDTA--CLNVG 177 (475)
T ss_pred eCCCceEEEEEECCEEEEEE--EEecc
Confidence 99999999999999988764 34444
No 56
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=96.02 E-value=0.051 Score=49.97 Aligned_cols=161 Identities=23% Similarity=0.250 Sum_probs=76.6
Q ss_pred EEEEcCCCcEEEeeeCCCCC-CcEecccceeecCCCcccccCcc-c--cc--cCceeccccCCeec----CH--HHH-HH
Q 020526 4 AVVDAGSKLLKAGPAIPDQA-PSMVIPSQMKRVLEDGSSSVDNS-T--LV--EDVTVDPVVRGFIR----DW--DAM-ED 70 (325)
Q Consensus 4 vViD~Gs~~~k~G~a~gd~~-P~~~~ps~~~~~~~~~~~g~~~~-~--~~--~~~~~~p~~~g~i~----d~--~~~-~~ 70 (325)
|.||-|+.++|+.+. .+.. -..+.|+.....-.....| +.. . .. +.|...|.....+. +| ..+ .-
T Consensus 3 i~iDdG~~~~K~~~~-~~~~~~~~~~~~s~~~~~~~~~~~-~~~~~~y~v~g~~yt~~~~~~~~~~t~~~~y~~s~~n~~ 80 (318)
T PF06406_consen 3 IAIDDGSTNVKLAWY-EDGKIKTSISPNSFRSGWKVSFMG-DSKSFNYEVDGEKYTVDEVSSDALDTTHVDYQYSDLNLV 80 (318)
T ss_dssp EEEEE-SSEEEEEEE--SS-EEEEEEE--EESS----S-S-SS---EEESSSSEEEESTTBTTTTSS-HGGGGGSHHHHH
T ss_pred EEEecCCCceeEEEe-cCCeEEEEeccccccccccccccC-CCceeEEEECCEEEEEcCCCCccccccccccccchhhHH
Confidence 789999999999998 4432 1233444332211111122 110 0 00 01111222222211 22 122 33
Q ss_pred HHHHHHHhccCCCCCCCceEEEEcCCC--CC---HHHHHHHHH---Hhh--------hhcCCCeEEEechhhhhhhhc--
Q 020526 71 LLHHVLYAGLGWEEGNEGQILFTDPLC--SP---KAVREQLVQ---LMF--------ETFNISGFYSSEQAVLSLYAV-- 132 (325)
Q Consensus 71 il~~~~~~~l~~~~~~~~~vll~~~~~--~~---~~~r~~l~~---~lf--------e~~~~~~v~~~~~~~~a~~~~-- 132 (325)
+++|++.+ -+..+ .+-.++++.|.- .. ...++.+.+ -+. +.+.+..|.+.||+++|.|..
T Consensus 81 av~haL~~-~G~~~-~~V~lvvGLPl~~y~~~~~~~~~~~i~rk~~n~~~~v~~~g~~~i~I~~V~V~PQ~~~A~~~~~~ 158 (318)
T PF06406_consen 81 AVHHALLK-AGLEP-QDVDLVVGLPLSEYYDQDKQKNEENIERKKENLMRPVELNGGYTITIKDVEVFPQSVGAVFDALM 158 (318)
T ss_dssp HHHHHHHH-HS--S-SEEEEEEEE-HHHHB-TTSSB-HHHHHHHHHHTTS-EEETTB---EEEEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHH-cCCCC-CCeEEEecCCHHHHHhhhhhhHHHHHHhhhcccccceeecCceeEEEeeEEEEcccHHHHHHHHH
Confidence 55677754 46666 667777777722 11 111222211 121 234578999999999998874
Q ss_pred ---CCceEEEEEcCCCceEEEEeecCeeccccc-eeecCc
Q 020526 133 ---GRISGCTVDIGHGKIDIAPVIEGAVQHIAS-RRFEVG 168 (325)
Q Consensus 133 ---g~~tglVVdiG~~~t~v~pv~~G~~i~~~~-~~~~~g 168 (325)
...+-+|||||+.+|.++.|.++....... ...+.|
T Consensus 159 ~~~~~~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~G 198 (318)
T PF06406_consen 159 DLDEDESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIG 198 (318)
T ss_dssp TS-TTSEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSS
T ss_pred hhcccCcEEEEEcCCCeEEeeeecCCccccchhccCCchh
Confidence 235789999999999999887765444333 334566
No 57
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.22 Score=49.31 Aligned_cols=67 Identities=13% Similarity=0.155 Sum_probs=57.6
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCC------------ceEEEEEcCCCceEEEEee
Q 020526 86 NEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR------------ISGCTVDIGHGKIDIAPVI 153 (325)
Q Consensus 86 ~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------------~tglVVdiG~~~t~v~pv~ 153 (325)
.-.++++..|.+.+..+|..+++.. .-.++.-+-++.+..++++++|. .+-+-||+||+.++++...
T Consensus 136 ~v~DcvIavP~~FTd~qRravldAA-~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~a 214 (727)
T KOG0103|consen 136 PVSDCVIAVPSYFTDSQRRAVLDAA-RIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAA 214 (727)
T ss_pred CCCCeeEeccccccHHHHHHHHhHH-hhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeee
Confidence 5678999999999999999999877 56788999999999999999883 3468899999999887664
No 58
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.68 E-value=0.13 Score=49.94 Aligned_cols=198 Identities=16% Similarity=0.151 Sum_probs=100.7
Q ss_pred CceEEEEcCCCcEEEeeeCCCCCCcEecccceeecCCCcccccCccccccCceeccccCCeecCHHHHHHHHHHH--HHh
Q 020526 1 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVTVDPVVRGFIRDWDAMEDLLHHV--LYA 78 (325)
Q Consensus 1 m~~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~~~~~~g~~~~~~~~~~~~~p~~~g~i~d~~~~~~il~~~--~~~ 78 (325)
|..-+||+||.++|.=.+. ..| --+..+.+.+...-+| +-.. ..|.+ +-+++++.++-+ |.+
T Consensus 3 ~~~A~IDiGSNS~rlvV~~--~~~--~~~~~l~~~k~~vrLg-egl~----------~~g~L-~~eai~R~~~aL~~f~e 66 (492)
T COG0248 3 RRVAAIDLGSNSFRLVVAE--ITP--GSFQVLFREKRIVRLG-EGLD----------ATGNL-SEEAIERALSALKRFAE 66 (492)
T ss_pred ceEEEEEecCCeEEEEEEe--ccC--Cccchhhhhhhheehh-cCcc----------ccCCc-CHHHHHHHHHHHHHHHH
Confidence 3456999999999997772 223 1111221111111122 1100 12222 234555555321 112
Q ss_pred cc-CCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEech---hhhhhhh----cC-CceEEEEEcCCCceEE
Q 020526 79 GL-GWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQ---AVLSLYA----VG-RISGCTVDIGHGKIDI 149 (325)
Q Consensus 79 ~l-~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~---~~~a~~~----~g-~~tglVVdiG~~~t~v 149 (325)
.+ ...+ .+-.++-|.-.. .-.+.+...+.+-+.++++ +.+++. +.++.++ .+ ...++|+|+|+++|.+
T Consensus 67 ~~~~~~~-~~v~~vATsA~R-~A~N~~eFl~rv~~~~G~~-ievIsGeeEArl~~lGv~~~~~~~~~~lv~DIGGGStEl 143 (492)
T COG0248 67 LLDGFGA-EEVRVVATSALR-DAPNGDEFLARVEKELGLP-IEVISGEEEARLIYLGVASTLPRKGDGLVIDIGGGSTEL 143 (492)
T ss_pred HHhhCCC-CEEEEehhHHHH-cCCCHHHHHHHHHHHhCCc-eEEeccHHHHHHHHHHHHhcCCCCCCEEEEEecCCeEEE
Confidence 22 1223 333444443322 2233444445555556654 344433 3333332 24 6789999999999999
Q ss_pred EEeecCeeccccceeecCcchhchhhhcccCCcceEECCCCcEEEecceeeccccccccCCCC-CCcCCcHHHHHHHHHH
Q 020526 150 APVIEGAVQHIASRRFEVGDELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSIL-GLEAHGIVEQLVHTIS 228 (325)
Q Consensus 150 ~pv~~G~~i~~~~~~~~~ge~~~~~~~~~~~~~~~~~lpd~~~i~l~~e~~~~~E~lF~p~~~-~~~~~~i~~~I~~~i~ 228 (325)
+-+-+..+... ..+|- + +....|.+|..... ..+...+...+.+-++
T Consensus 144 ~~g~~~~~~~~------------------------~Sl~~------G--~v~lt~~~~~~~~~s~~~~~~~~~~~~~~l~ 191 (492)
T COG0248 144 VLGDNFEIGLL------------------------ISLPL------G--CVRLTERFFPDDPISEENFAKARDAVREELE 191 (492)
T ss_pred EEecCCcccee------------------------EEeec------c--eEEeehhhcCCCCCCHHHHHHHHHHHHHHHH
Confidence 88764433322 11111 1 22334555543211 1123456677777888
Q ss_pred hCChHHHHhccccEEEecCCC
Q 020526 229 TVSSENHRQLLENTVLCGGTT 249 (325)
Q Consensus 229 ~~~~d~r~~l~~nIil~GG~s 249 (325)
..+..++..++.+.+-+||+-
T Consensus 192 ~~~~~~~~~~~~~~vg~sGT~ 212 (492)
T COG0248 192 EIAKEYRIAGWAGLVGTSGTI 212 (492)
T ss_pred hhhHHHHhhhhccEEEccHHH
Confidence 888888888888888888863
No 59
>PRK10854 exopolyphosphatase; Provisional
Probab=95.62 E-value=0.14 Score=50.40 Aligned_cols=139 Identities=16% Similarity=0.039 Sum_probs=71.6
Q ss_pred ceEEEEcCCCcEEEeeeCCCCCCcEecccceeecCCCcccccCccccccCceeccccCCeecCHHHHHHHHHHH--HHhc
Q 020526 2 EAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVTVDPVVRGFIRDWDAMEDLLHHV--LYAG 79 (325)
Q Consensus 2 ~~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~~~~~~g~~~~~~~~~~~~~p~~~g~i~d~~~~~~il~~~--~~~~ 79 (325)
..-|||+||.++|.-.+..++....++-+. +...-+| +. -...|.+ +.+.+++.++-+ |...
T Consensus 12 ~~A~IDIGSNSirL~I~e~~~~~~~~i~~~----k~~vrLg-~g----------~~~~g~L-s~e~~~r~~~~L~~F~~~ 75 (513)
T PRK10854 12 EFAAVDLGSNSFHMVIARVVDGAMQIIGRL----KQRVHLA-DG----------LDSDNML-SEEAMERGLNCLSLFAER 75 (513)
T ss_pred EEEEEEeccchheEEEEEecCCcEEEeeee----eEEEECC-CC----------cCCCCCc-CHHHHHHHHHHHHHHHHH
Confidence 346999999999998883111111111110 0111122 11 1123433 345555555422 1122
Q ss_pred cCC-CCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechh---hhhhhhc-----CCceEEEEEcCCCceEEE
Q 020526 80 LGW-EEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQA---VLSLYAV-----GRISGCTVDIGHGKIDIA 150 (325)
Q Consensus 80 l~~-~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~---~~a~~~~-----g~~tglVVdiG~~~t~v~ 150 (325)
+.. .. .+..++-|.- +-.-.++...++-+.+..|++ +-+++.. .+...+. ...+++|||||+++|.++
T Consensus 76 ~~~~~v-~~v~~vATsA-lReA~N~~~fl~~i~~~tGl~-i~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~ 152 (513)
T PRK10854 76 LQGFSP-ANVCIVGTHT-LRQALNATDFLKRAEKVIPYP-IEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELV 152 (513)
T ss_pred HHhCCC-CeEEEEehHH-HHcCcCHHHHHHHHHHHHCCC-eEEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEE
Confidence 211 22 3344444433 324456777777777777765 4444443 2222211 124689999999999999
Q ss_pred EeecCeecc
Q 020526 151 PVIEGAVQH 159 (325)
Q Consensus 151 pv~~G~~i~ 159 (325)
-+-+|.+..
T Consensus 153 ~~~~~~~~~ 161 (513)
T PRK10854 153 IGENFEPIL 161 (513)
T ss_pred EecCCCeeE
Confidence 998876544
No 60
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=95.58 E-value=0.13 Score=50.30 Aligned_cols=72 Identities=13% Similarity=0.105 Sum_probs=43.5
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechh---hhhhhhc-----CCceEEEEEcCCCceEEEEeecCeec
Q 020526 87 EGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQA---VLSLYAV-----GRISGCTVDIGHGKIDIAPVIEGAVQ 158 (325)
Q Consensus 87 ~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~---~~a~~~~-----g~~tglVVdiG~~~t~v~pv~~G~~i 158 (325)
+..++-|.- .-.-.+++..++-+.+..|++ +-+++.. .++.++. ...+++|||||+++|.++-+-+|.+.
T Consensus 78 ~i~~vATsA-vReA~N~~~fl~~i~~~tGl~-ievIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~ 155 (496)
T PRK11031 78 QIRVVATAT-LRLAVNADEFLAKAQEILGCP-VQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGAQAT 155 (496)
T ss_pred eEEEEEeHH-HHcCcCHHHHHHHHHHHHCCC-eEEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEecCCcee
Confidence 344444433 324455677777777777754 3444433 2222211 12358999999999999988877665
Q ss_pred cc
Q 020526 159 HI 160 (325)
Q Consensus 159 ~~ 160 (325)
..
T Consensus 156 ~~ 157 (496)
T PRK11031 156 SL 157 (496)
T ss_pred ee
Confidence 43
No 61
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.22 Score=46.34 Aligned_cols=73 Identities=18% Similarity=0.160 Sum_probs=53.4
Q ss_pred ccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcC------CceEEEEEcCCCceEEEE-
Q 020526 79 GLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVG------RISGCTVDIGHGKIDIAP- 151 (325)
Q Consensus 79 ~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g------~~tglVVdiG~~~t~v~p- 151 (325)
+|+.+. ...+++.|......+|+..-+.- --.+..-+.++++|.+|++++| ..+-+|.|.|++.-.|.-
T Consensus 167 yLGkkv---~~AVvTvPAYFNDAQrQATKDAG-tIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlL 242 (663)
T KOG0100|consen 167 YLGKKV---THAVVTVPAYFNDAQRQATKDAG-TIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLL 242 (663)
T ss_pred HhCCcc---cceEEecchhcchHHHhhhcccc-eeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEE
Confidence 455443 66788999988888887665422 2246667889999999999987 357799999998876644
Q ss_pred -eecC
Q 020526 152 -VIEG 155 (325)
Q Consensus 152 -v~~G 155 (325)
|-+|
T Consensus 243 tIdnG 247 (663)
T KOG0100|consen 243 TIDNG 247 (663)
T ss_pred EEcCc
Confidence 4455
No 62
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=95.52 E-value=0.055 Score=48.00 Aligned_cols=50 Identities=16% Similarity=0.320 Sum_probs=37.4
Q ss_pred ccEEEecCCCCccchHHHHHHhhccCCCCcceEEeCCCCCCCCCCCceeeeehhhhhh
Q 020526 240 ENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILA 297 (325)
Q Consensus 240 ~nIil~GG~s~~~G~~~rl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a 297 (325)
++|+++||.+..+++.+.|+++|... ...+.+..+|+ |++..=+||++++
T Consensus 213 ~~v~~~GGva~n~~~~~~le~~l~~~--~~~~~v~~~~~------~q~~gAlGAAl~~ 262 (262)
T TIGR02261 213 GTVLCTGGLALDAGLLEALKDAIQEA--KMAVAAENHPD------AIYAGAIGAALWG 262 (262)
T ss_pred CcEEEECcccccHHHHHHHHHHhccC--CcceEecCCCc------chHHHHHHHHHcC
Confidence 46999999999999999999988211 12344544555 7788888888764
No 63
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=95.45 E-value=0.097 Score=45.73 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCceEEEEeecCe
Q 020526 134 RISGCTVDIGHGKIDIAPVIEGA 156 (325)
Q Consensus 134 ~~tglVVdiG~~~t~v~pv~~G~ 156 (325)
..+++.||+|..+|.|+||.+|.
T Consensus 129 ~dsci~VD~GSTTtDIIPi~~ge 151 (330)
T COG1548 129 KDSCILVDMGSTTTDIIPIKDGE 151 (330)
T ss_pred CCceEEEecCCcccceEeecchh
Confidence 46799999999999999999996
No 64
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=95.22 E-value=0.2 Score=49.56 Aligned_cols=67 Identities=13% Similarity=0.113 Sum_probs=54.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCC-------ceEEEEEcCCCceEEEEee
Q 020526 86 NEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR-------ISGCTVDIGHGKIDIAPVI 153 (325)
Q Consensus 86 ~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-------~tglVVdiG~~~t~v~pv~ 153 (325)
.-..++++.|...+..+|+..-+-. ...+++.+.++++|.+|++++|. .+-+|.|.|++...|.++.
T Consensus 142 ~v~~aviTVPa~F~~~Qr~at~~A~-~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~ 215 (620)
T KOG0101|consen 142 TVKKAVVTVPAYFNDSQRAATKDAA-LIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLS 215 (620)
T ss_pred ceeeEEEEecCCcCHHHHHHHHHHH-HhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEE
Confidence 3467899999888887777666544 55788999999999999999873 4569999999999888864
No 65
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=94.49 E-value=0.4 Score=43.64 Aligned_cols=71 Identities=13% Similarity=0.057 Sum_probs=44.5
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhh---h----cCCceEEEEEcCCCceEEEEeecCeecc
Q 020526 87 EGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLY---A----VGRISGCTVDIGHGKIDIAPVIEGAVQH 159 (325)
Q Consensus 87 ~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~---~----~g~~tglVVdiG~~~t~v~pv~~G~~i~ 159 (325)
+..++.|.-.. .-.+++.+++.+.+..+++ +-+++..--|.| + ....+++++|+|+++|.++-+-+|.+..
T Consensus 72 ~i~~vaTsa~R-~A~N~~~~~~~i~~~tgi~-i~visg~eEa~l~~~gv~~~~~~~~~~v~DiGGGSte~~~~~~~~~~~ 149 (300)
T TIGR03706 72 EVRAVATAALR-DAKNGPEFLREAEAILGLP-IEVISGEEEARLIYLGVAHTLPIADGLVVDIGGGSTELILGKDFEPGE 149 (300)
T ss_pred eEEEEEcHHHH-cCCCHHHHHHHHHHHHCCC-eEEeChHHHHHHHHHHHHhCCCCCCcEEEEecCCeEEEEEecCCCEeE
Confidence 34445444433 4456778888887777753 455554422222 2 1234579999999999999887776543
No 66
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=93.51 E-value=1.8 Score=38.10 Aligned_cols=15 Identities=13% Similarity=0.237 Sum_probs=14.0
Q ss_pred EEEEcCCCcEEEeee
Q 020526 4 AVVDAGSKLLKAGPA 18 (325)
Q Consensus 4 vViD~Gs~~~k~G~a 18 (325)
++||+|-.++|+|+-
T Consensus 2 L~iDiGNT~i~~g~~ 16 (243)
T TIGR00671 2 LLIDVGNTRIVFALN 16 (243)
T ss_pred EEEEECCCcEEEEEE
Confidence 689999999999988
No 67
>PRK13321 pantothenate kinase; Reviewed
Probab=93.35 E-value=1.6 Score=38.66 Aligned_cols=16 Identities=25% Similarity=0.401 Sum_probs=14.8
Q ss_pred eEEEEcCCCcEEEeee
Q 020526 3 AAVVDAGSKLLKAGPA 18 (325)
Q Consensus 3 ~vViD~Gs~~~k~G~a 18 (325)
.+.||+|..++|+|+.
T Consensus 2 iL~IDIGnT~ik~gl~ 17 (256)
T PRK13321 2 LLLIDVGNTNIKLGVF 17 (256)
T ss_pred EEEEEECCCeEEEEEE
Confidence 3789999999999999
No 68
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=93.26 E-value=1.4 Score=40.41 Aligned_cols=29 Identities=31% Similarity=0.397 Sum_probs=26.0
Q ss_pred cCCceEEEEEcCCCceEEEEeecCeeccc
Q 020526 132 VGRISGCTVDIGHGKIDIAPVIEGAVQHI 160 (325)
Q Consensus 132 ~g~~tglVVdiG~~~t~v~pv~~G~~i~~ 160 (325)
....+++.+|||..+|.|+||.+|.+...
T Consensus 125 ~~~~~~I~~DmGGTTtDi~~i~~G~p~~~ 153 (318)
T TIGR03123 125 KRIPECLFVDMGSTTTDIIPIIDGEVAAK 153 (318)
T ss_pred hcCCCEEEEEcCccceeeEEecCCEeeee
Confidence 34789999999999999999999998765
No 69
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=92.75 E-value=0.12 Score=48.31 Aligned_cols=51 Identities=14% Similarity=0.277 Sum_probs=39.5
Q ss_pred ccccEEEecCCCCccchHHHHHHhh-ccCCCCcceEEeCCCCCCCCCCCceeeeehhhhhh
Q 020526 238 LLENTVLCGGTTSMTGFEDRFQKEA-GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILA 297 (325)
Q Consensus 238 l~~nIil~GG~s~~~G~~~rl~~eL-~~~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a 297 (325)
+-.+|+++||.+..++|.+.|++.| ...+ ..+|..+++ +++..=+||+++|
T Consensus 381 i~~~VvftGGvA~N~gvv~aLe~~L~~~~~---~~~V~Vp~~------pq~~GALGAAL~a 432 (432)
T TIGR02259 381 ITDQFTFTGGVAKNEAAVKELRKLIKENYG---EVQINIDPD------SIYTGALGASEFA 432 (432)
T ss_pred CCCCEEEECCccccHHHHHHHHHHHccccC---CCeEecCCC------ccHHHHHHHHHhC
Confidence 4567999999999999999999999 3321 234555666 7888889998875
No 70
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=92.09 E-value=1.6 Score=38.95 Aligned_cols=47 Identities=19% Similarity=0.225 Sum_probs=33.5
Q ss_pred EEEecCCCCccchHHHHHHhh-ccCCCCcceEEeCCCCCCCCCCCceeeeehhhhhh
Q 020526 242 TVLCGGTTSMTGFEDRFQKEA-GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILA 297 (325)
Q Consensus 242 Iil~GG~s~~~G~~~rl~~eL-~~~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a 297 (325)
|+++||......+.+.|.+.| +..+.. ++.+... |.+.+..||.++|
T Consensus 224 v~l~GGv~~~~~~~~~l~~~l~~~~~~~-~~~~~~~--------~~~~~a~GAallA 271 (271)
T PF01869_consen 224 VVLSGGVFKNSPLVKALRDALKEKLPKV-PIIIPVE--------PQYDPAYGAALLA 271 (271)
T ss_dssp EEEESGGGGCHHHHHHHGGGS-HHHHCC-TCECECC--------GSSHHHHHHHHHH
T ss_pred EEEECCccCchHHHHHHHHHHHHhcCCC-ceEECCC--------CCccHHHHHHHhC
Confidence 999999998888888887666 433332 3333333 5688999999876
No 71
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=91.69 E-value=4.8 Score=38.69 Aligned_cols=149 Identities=15% Similarity=0.200 Sum_probs=85.4
Q ss_pred ceEEEEcCCCcEEEeeeC---CCCCCcEecccceeecCCCcccccCccccccCceeccccCCeecCHHHHHHHHHHHHHh
Q 020526 2 EAAVVDAGSKLLKAGPAI---PDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVTVDPVVRGFIRDWDAMEDLLHHVLYA 78 (325)
Q Consensus 2 ~~vViD~Gs~~~k~G~a~---gd~~P~~~~ps~~~~~~~~~~~g~~~~~~~~~~~~~p~~~g~i~d~~~~~~il~~~~~~ 78 (325)
-.|=||+||.+|++=|+. ....+.+..|-..-.. -+.....++-..|+......|-+.++++++.-|.+
T Consensus 4 ~SVGIDIGTSTTQlvfSrl~l~n~a~~~~vPri~I~d--------keViYrS~I~fTPl~~~~~ID~~al~~iv~~eY~~ 75 (473)
T PF06277_consen 4 LSVGIDIGTSTTQLVFSRLTLENRASGFSVPRIEIVD--------KEVIYRSPIYFTPLLSQTEIDAEALKEIVEEEYRK 75 (473)
T ss_pred EEEEEeecCCceeEEEEEeEEEeccCCCccceEEEec--------cEEEecCCccccCCCCCCccCHHHHHHHHHHHHHH
Confidence 357799999999998883 1111222222211110 00000012224688887778999999999998864
Q ss_pred ccCCCC-C-CCceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEe-----chhhhhhhhcC------C--ceEEEEEcC
Q 020526 79 GLGWEE-G-NEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSS-----EQAVLSLYAVG------R--ISGCTVDIG 143 (325)
Q Consensus 79 ~l~~~~-~-~~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~-----~~~~~a~~~~g------~--~tglVVdiG 143 (325)
-++.| + +.--|++|-... -+++-+.+.+.|-+..| -+.+. -++++|..++| . ..-+=+|||
T Consensus 76 -Agi~p~~I~TGAVIITGETA-rKeNA~~v~~~Ls~~aG--DFVVATAGPdLEsiiAgkGsGA~~~S~~~~~~V~NiDIG 151 (473)
T PF06277_consen 76 -AGITPEDIDTGAVIITGETA-RKENAREVLHALSGFAG--DFVVATAGPDLESIIAGKGSGAAALSKEHHTVVANIDIG 151 (473)
T ss_pred -cCCCHHHCccccEEEecchh-hhhhHHHHHHHHHHhcC--CEEEEccCCCHHHHHhccCccHHHHhhhhCCeEEEEEeC
Confidence 56665 1 223455554433 33333444444444333 22222 13466666665 1 233446999
Q ss_pred CCceEEEEeecCeeccccc
Q 020526 144 HGKIDIAPVIEGAVQHIAS 162 (325)
Q Consensus 144 ~~~t~v~pv~~G~~i~~~~ 162 (325)
+++|.++-+-+|.++..+.
T Consensus 152 GGTtN~avf~~G~v~~T~c 170 (473)
T PF06277_consen 152 GGTTNIAVFDNGEVIDTAC 170 (473)
T ss_pred CCceeEEEEECCEEEEEEE
Confidence 9999999999999987653
No 72
>PRK13318 pantothenate kinase; Reviewed
Probab=91.55 E-value=6 Score=35.06 Aligned_cols=16 Identities=19% Similarity=0.148 Sum_probs=14.8
Q ss_pred eEEEEcCCCcEEEeee
Q 020526 3 AAVVDAGSKLLKAGPA 18 (325)
Q Consensus 3 ~vViD~Gs~~~k~G~a 18 (325)
.+.||+|..++|+|+.
T Consensus 2 iL~IDIGnT~iK~al~ 17 (258)
T PRK13318 2 LLAIDVGNTNTVFGLY 17 (258)
T ss_pred EEEEEECCCcEEEEEE
Confidence 4789999999999998
No 73
>PRK13326 pantothenate kinase; Reviewed
Probab=90.62 E-value=6.9 Score=34.87 Aligned_cols=16 Identities=13% Similarity=0.227 Sum_probs=14.8
Q ss_pred eEEEEcCCCcEEEeee
Q 020526 3 AAVVDAGSKLLKAGPA 18 (325)
Q Consensus 3 ~vViD~Gs~~~k~G~a 18 (325)
-++||+|-.++|+|+.
T Consensus 8 ~L~IDiGNT~ik~glf 23 (262)
T PRK13326 8 QLIIDIGNTSISFALY 23 (262)
T ss_pred EEEEEeCCCeEEEEEE
Confidence 3799999999999999
No 74
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=90.30 E-value=0.34 Score=43.89 Aligned_cols=34 Identities=24% Similarity=0.278 Sum_probs=23.4
Q ss_pred hhh-hcCCceEEEEEcCCCceEEEEeecCeecccc
Q 020526 128 SLY-AVGRISGCTVDIGHGKIDIAPVIEGAVQHIA 161 (325)
Q Consensus 128 a~~-~~g~~tglVVdiG~~~t~v~pv~~G~~i~~~ 161 (325)
+++ ..|..++++||||..+|.|.+|.||.+....
T Consensus 69 a~~~~~g~~~~i~vDmGGTTtDi~~i~~G~p~~~~ 103 (290)
T PF01968_consen 69 AAARLTGLENAIVVDMGGTTTDIALIKDGRPEISS 103 (290)
T ss_dssp HHH--HT-SSEEEEEE-SS-EEEEEEETTEE----
T ss_pred hhhhcCCCCCEEEEeCCCCEEEEEEEECCeeeccc
Confidence 444 5588999999999999999999999996443
No 75
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=89.89 E-value=3.4 Score=36.53 Aligned_cols=18 Identities=11% Similarity=0.117 Sum_probs=15.5
Q ss_pred eEEEEcCCCcEEEeeeCCC
Q 020526 3 AAVVDAGSKLLKAGPAIPD 21 (325)
Q Consensus 3 ~vViD~Gs~~~k~G~a~gd 21 (325)
-++||+|-.++++|.- .+
T Consensus 2 ~L~iDiGNT~~~~a~~-~~ 19 (251)
T COG1521 2 LLLIDIGNTRIVFALY-EG 19 (251)
T ss_pred eEEEEeCCCeEEEEEe-cC
Confidence 3789999999999999 43
No 76
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=88.61 E-value=5.5 Score=35.79 Aligned_cols=221 Identities=19% Similarity=0.218 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHhccCCCC-CCCceEEEEcCCCCCHHHHHHHHHHhhhhcC--CCeEEEechhhhhhhhc--CCceEEEE
Q 020526 66 DAMEDLLHHVLYAGLGWEE-GNEGQILFTDPLCSPKAVREQLVQLMFETFN--ISGFYSSEQAVLSLYAV--GRISGCTV 140 (325)
Q Consensus 66 ~~~~~il~~~~~~~l~~~~-~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~--~~~v~~~~~~~~a~~~~--g~~tglVV 140 (325)
+.++..++.++.+ -++++ +--+.+.+.-+-...++..+++.+.+=.+|- +..+++..++.+++++. |...|+|+
T Consensus 47 ~rie~~i~~A~~k-~g~d~~~~lr~lgL~lSg~d~e~~~~~lv~~~R~~fps~ae~~~v~sDa~~sl~a~t~g~~~GiVL 125 (336)
T KOG1794|consen 47 SRIEDMIREAKEK-AGWDKKGPLRSLGLGLSGTDQEDKNRKLVTEFRDKFPSVAENFYVTSDADGSLAAATPGGEGGIVL 125 (336)
T ss_pred HHHHHHHHHHHhh-cCCCccCccceeeeecccCCchhHHHHHHHHHHHhccchhheeeeehhHHHHHhhcCCCCCCcEEE
Confidence 3577888888754 45555 1236777777777777777888877766552 34578888888888876 56999999
Q ss_pred EcCCCceEEEEeecCeeccccceeecCcch-hch-----------hhh---cccC---------CcceEECCCCcEEEec
Q 020526 141 DIGHGKIDIAPVIEGAVQHIASRRFEVGDE-LAY-----------EKT---QKSC---------EIEQHTLPDGQVIRIG 196 (325)
Q Consensus 141 diG~~~t~v~pv~~G~~i~~~~~~~~~ge~-~~~-----------~~~---~~~~---------~~~~~~lpd~~~i~l~ 196 (325)
=.|.++..-.-.-||..-......--+|.- ..| ... ++.. -.+.|.++|...+ .
T Consensus 126 iaGTgs~crl~~~DGs~~~~ggwg~~iGd~GSaywia~~Avq~vfda~dg~e~~~~~i~~v~~tif~~~~l~d~l~m--l 203 (336)
T KOG1794|consen 126 IAGTGSNCRLVNPDGSEKGAGGWGHMIGDGGSAYWIARQAVQMVFDAEDGFENMMDKIKDVKQTIFKHFNLRDRLQM--L 203 (336)
T ss_pred EecCCceeEEECCCCCccCCCCCCCccCCCcchhhhhhhhhhheeehhcCcccccchHHHHHHHHHHHcCCCCHHHH--H
Confidence 999988888777787655444433333310 111 000 0000 0133444432110 0
Q ss_pred ceeeccc----cccccCCCCCC--------------cCCcHHHHHHHHHHhCChHHHHhccccEEEecCCC-CccchHHH
Q 020526 197 KERYTVG----EALFQPSILGL--------------EAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTT-SMTGFEDR 257 (325)
Q Consensus 197 ~e~~~~~----E~lF~p~~~~~--------------~~~~i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s-~~~G~~~r 257 (325)
..+|.=+ =+.|-+++... ....|..+|..+++++|++.++---=.|+++||.- .-..+.+-
T Consensus 204 ~~~Ys~f~k~riA~f~~kla~~ae~Gd~~~~~ifr~Ag~~Lg~~V~aVl~~l~~~~k~g~~l~Iv~vG~V~~Sw~~l~~G 283 (336)
T KOG1794|consen 204 EHLYSDFDKHRIALFTEKLAEHAEIGDPLSAEIFRNAGETLGRHVVAVLPQLPPTLKKGKTLPIVCVGGVFDSWDLLQEG 283 (336)
T ss_pred HHHHhcchHHHHHHHHHHHHhhhhccCHHHHHHHHHHHHHHHHHHHHHHhhcCchhcccCcceEEEEcchhhHHHHHHHH
Confidence 0011000 01222221111 12457788899999999988885333599999954 46667777
Q ss_pred HHHhhccCCCCcceEEeCCCCCCCCCCCceeeeehhhhhhc
Q 020526 258 FQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAK 298 (325)
Q Consensus 258 l~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~ 298 (325)
+..+|+....--+++.+. ++.++=.||+++|.
T Consensus 284 fl~sls~~~~f~~~~l~~---------~k~ssAvgAA~laa 315 (336)
T KOG1794|consen 284 FLDSLSDTRGFERVELYR---------PKESSAVGAAILAA 315 (336)
T ss_pred HHHHhhcccCccceEEEe---------ecccchHHHHHHhh
Confidence 777772111111334432 34566678777765
No 77
>PRK13317 pantothenate kinase; Provisional
Probab=86.50 E-value=0.98 Score=40.63 Aligned_cols=71 Identities=24% Similarity=0.258 Sum_probs=47.5
Q ss_pred cHHHHHHHHHHhCChH-HHHhccccEEEec-CCCCccchHHHHHHhhccCCCCcceEEeCCCCCCCCCCCceeeeehhhh
Q 020526 218 GIVEQLVHTISTVSSE-NHRQLLENTVLCG-GTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAI 295 (325)
Q Consensus 218 ~i~~~I~~~i~~~~~d-~r~~l~~nIil~G-G~s~~~G~~~rl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si 295 (325)
+|..+|.+.|..+..- .|..-.++|+++| |.+..|++.++|.+.+.+. ..+++-+++ +++..=+||++
T Consensus 201 sl~~~v~~~I~~lA~~~ar~~~~~~Ivf~G~gla~n~~l~~~l~~~l~~~----~~~~~~p~~------~~~~gAlGAaL 270 (277)
T PRK13317 201 GVIGLVGEVITTLSIQAAREKNIENIVYIGSTLTNNPLLQEIIESYTKLR----NCTPIFLEN------GGYSGAIGALL 270 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEECcccccCHHHHHHHHHHHhcC----CceEEecCC------CchhHHHHHHH
Confidence 5555555555544221 2334457999999 7999999999999877332 234444444 67888899988
Q ss_pred hhc
Q 020526 296 LAK 298 (325)
Q Consensus 296 ~a~ 298 (325)
++.
T Consensus 271 ~a~ 273 (277)
T PRK13317 271 LAT 273 (277)
T ss_pred Hhh
Confidence 875
No 78
>PRK13324 pantothenate kinase; Reviewed
Probab=86.47 E-value=21 Score=31.80 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=14.8
Q ss_pred eEEEEcCCCcEEEeee
Q 020526 3 AAVVDAGSKLLKAGPA 18 (325)
Q Consensus 3 ~vViD~Gs~~~k~G~a 18 (325)
-+.||+|-.++|+|+.
T Consensus 2 iL~iDiGNT~ik~gl~ 17 (258)
T PRK13324 2 LLVMDMGNSHIHIGVF 17 (258)
T ss_pred EEEEEeCCCceEEEEE
Confidence 5789999999999998
No 79
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=86.33 E-value=3.3 Score=38.13 Aligned_cols=31 Identities=19% Similarity=0.206 Sum_probs=26.8
Q ss_pred cCCceEEEEEcCCCceEEEEeecCeeccccc
Q 020526 132 VGRISGCTVDIGHGKIDIAPVIEGAVQHIAS 162 (325)
Q Consensus 132 ~g~~tglVVdiG~~~t~v~pv~~G~~i~~~~ 162 (325)
+...+-++||+|++.|.++.|.+|+++..--
T Consensus 151 y~~~nfIlvEiG~~yta~iaV~~GkIVDGig 181 (343)
T PF07318_consen 151 YREVNFILVEIGSGYTAAIAVKNGKIVDGIG 181 (343)
T ss_pred cccceEEEEEccCCceEEEEEECCeEEcccc
Confidence 4456999999999999999999999987543
No 80
>PRK13320 pantothenate kinase; Reviewed
Probab=86.27 E-value=22 Score=31.35 Aligned_cols=16 Identities=25% Similarity=0.258 Sum_probs=14.7
Q ss_pred eEEEEcCCCcEEEeee
Q 020526 3 AAVVDAGSKLLKAGPA 18 (325)
Q Consensus 3 ~vViD~Gs~~~k~G~a 18 (325)
-+.||+|-.++|+|+-
T Consensus 4 ~L~iDiGNT~ik~~~~ 19 (244)
T PRK13320 4 NLVIDIGNTTTKLAVF 19 (244)
T ss_pred EEEEEeCCCcEEEEEE
Confidence 4789999999999998
No 81
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=82.20 E-value=26 Score=29.82 Aligned_cols=15 Identities=20% Similarity=0.253 Sum_probs=13.4
Q ss_pred EEEEcCCCcEEEeee
Q 020526 4 AVVDAGSKLLKAGPA 18 (325)
Q Consensus 4 vViD~Gs~~~k~G~a 18 (325)
++||+|-.++|+|+-
T Consensus 2 L~iDiGNT~ik~~~~ 16 (206)
T PF03309_consen 2 LLIDIGNTRIKWALF 16 (206)
T ss_dssp EEEEE-SSEEEEEEE
T ss_pred EEEEECCCeEEEEEE
Confidence 789999999999999
No 82
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=75.77 E-value=4 Score=36.71 Aligned_cols=78 Identities=18% Similarity=0.235 Sum_probs=48.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechh---hhh----hhhc-CCceEEEEEcCCCceEEEEeecCeec
Q 020526 87 EGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQA---VLS----LYAV-GRISGCTVDIGHGKIDIAPVIEGAVQ 158 (325)
Q Consensus 87 ~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~---~~a----~~~~-g~~tglVVdiG~~~t~v~pv~~G~~i 158 (325)
+..++-|+... .-.+++.+.+.+.+..|++ +.+++.. .++ ..+. ...+++|+|+|+++|.++.+-+|.+.
T Consensus 58 ~i~~vATsA~R-~A~N~~~~~~~i~~~tGi~-i~iIsgeeEa~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~ 135 (285)
T PF02541_consen 58 KIRAVATSALR-EAKNSDEFLDRIKKETGID-IEIISGEEEARLSFLGVLSSLPPDKNGLVIDIGGGSTELILFENGKVV 135 (285)
T ss_dssp EEEEEEEHHHH-HSTTHHHHHHHHHHHHSS--EEEE-HHHHHHHHHHHHHHHSTTTSSEEEEEEESSEEEEEEEETTEEE
T ss_pred EEEEEhhHHHH-hCcCHHHHHHHHHHHhCCc-eEEecHHHHHHHHHHHHHhhccccCCEEEEEECCCceEEEEEECCeee
Confidence 34444444322 3345667788888888865 4445443 221 1223 67899999999999999999998876
Q ss_pred cccceeecCc
Q 020526 159 HIASRRFEVG 168 (325)
Q Consensus 159 ~~~~~~~~~g 168 (325)
.. ..+++|
T Consensus 136 ~~--~Sl~lG 143 (285)
T PF02541_consen 136 FS--QSLPLG 143 (285)
T ss_dssp EE--EEES--
T ss_pred Ee--eeeehH
Confidence 64 456666
No 83
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=75.05 E-value=12 Score=36.61 Aligned_cols=69 Identities=16% Similarity=0.158 Sum_probs=50.6
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCCc-----eEEEEEcCCCceEEEE--eecCe
Q 020526 87 EGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRI-----SGCTVDIGHGKIDIAP--VIEGA 156 (325)
Q Consensus 87 ~~~vll~~~~~~~~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~-----tglVVdiG~~~t~v~p--v~~G~ 156 (325)
-...+++.|.++...+|+..-+. -.-++...+-.+++|.+|++++|.. .-.|-|+|.+...|.- |.+|.
T Consensus 160 v~~avvtvpAyfndsqRqaTkda-g~iagl~vlrvineptaaalaygld~k~~g~iaV~dLgggtfdisilei~~gv 235 (640)
T KOG0102|consen 160 VKNAVITVPAYFNDSQRQATKDA-GQIAGLNVLRVINEPTAAALAYGLDKKEDGVIAVFDLGGGTFDISILEIEDGV 235 (640)
T ss_pred hhheeeccHHHHhHHHHHHhHhh-hhhccceeeccCCccchhHHhhcccccCCCceEEEEcCCceeeeeeehhccce
Confidence 35678899988888777765543 3556777888999999999999743 3478899987765543 45554
No 84
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=71.06 E-value=3 Score=39.03 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=19.8
Q ss_pred cccEEEecCCCCccchHHHHHHhh
Q 020526 239 LENTVLCGGTTSMTGFEDRFQKEA 262 (325)
Q Consensus 239 ~~nIil~GG~s~~~G~~~rl~~eL 262 (325)
...|++|||++.-+-|.+||++.|
T Consensus 285 ~~~v~v~GGGa~N~~L~~~L~~~l 308 (364)
T PF03702_consen 285 PDEVYVCGGGARNPFLMERLQERL 308 (364)
T ss_dssp -EEEEEESGGGG-HHHHHHHHHH-
T ss_pred CceEEEECCCcCCHHHHHHHHhhC
Confidence 346999999999999999999998
No 85
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=66.56 E-value=33 Score=30.31 Aligned_cols=56 Identities=18% Similarity=0.175 Sum_probs=39.3
Q ss_pred HHHHHHHHhhhhcCCCeEEEechhhhhhhhc-------CCceEEEEEcCCCceEEEEeecCeec
Q 020526 102 VREQLVQLMFETFNISGFYSSEQAVLSLYAV-------GRISGCTVDIGHGKIDIAPVIEGAVQ 158 (325)
Q Consensus 102 ~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~-------g~~tglVVdiG~~~t~v~pv~~G~~i 158 (325)
.|-+...-.....+... .+.+...+|.++. .....+|||+|.+.|-..-|.+|++.
T Consensus 128 TRm~av~~~~~~~~~~~-~vmDTg~AAvlGal~d~~v~~~~~~~~vniGN~HTlaa~v~~~rI~ 190 (254)
T PF08735_consen 128 TRMRAVRESLGGAGYDE-VVMDTGPAAVLGALCDPEVSSREGIIVVNIGNGHTLAALVKDGRIY 190 (254)
T ss_pred HHHHHHHHHhccCCCCc-eEecCHHHHHhhhhcChhhhccCCeEEEEeCCccEEEEEEeCCEEE
Confidence 33333333334444444 7788877777754 35678999999999999999998874
No 86
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=63.62 E-value=73 Score=28.83 Aligned_cols=53 Identities=15% Similarity=0.196 Sum_probs=40.4
Q ss_pred HHHHhhhhcCCCeEEEechhhhhhhh-------cCCceEEEEEcCCCceEEEEeecCeeccc
Q 020526 106 LVQLMFETFNISGFYSSEQAVLSLYA-------VGRISGCTVDIGHGKIDIAPVIEGAVQHI 160 (325)
Q Consensus 106 l~~~lfe~~~~~~v~~~~~~~~a~~~-------~g~~tglVVdiG~~~t~v~pv~~G~~i~~ 160 (325)
+.+.+=+.+++| |++.+++-+++++ .+..+.++|.+|.+. ...-|.+|.++..
T Consensus 89 l~~~l~~~~~~p-v~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGi-G~giv~~G~~~~G 148 (318)
T TIGR00744 89 LKEKVEARVGLP-VVVENDANAAALGEYKKGAGKGARDVICITLGTGL-GGGIIINGEIRHG 148 (318)
T ss_pred HHHHHHHHHCCC-EEEechHHHHHHHHHHhcccCCCCcEEEEEeCCcc-EEEEEECCEEeec
Confidence 555565778887 8889988888774 245789999999865 6677789988764
No 87
>TIGR03367 queuosine_QueD queuosine biosynthesis protein QueD. Members of this protein family, closely related to eukaryotic 6-pyruvoyl tetrahydrobiopterin synthase enzymes, are the QueD protein of queuosine biosynthesis. Queuosine is a hypermodified base in the wobble position of tRNAs for Tyr, His, Asp, and Asn in many species. This modification, although widespread, appears not to be important for viability. The queuosine precursor made by this enzyme may be converted instead to archeaosine as in some Archaea.
Probab=62.13 E-value=13 Score=27.28 Aligned_cols=50 Identities=14% Similarity=0.335 Sum_probs=35.4
Q ss_pred cCCeecCHHHHHHHHHHHHHhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcC
Q 020526 58 VRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFN 115 (325)
Q Consensus 58 ~~g~i~d~~~~~~il~~~~~~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~ 115 (325)
..|.+.|+..++++++.+... -++..|...+++. ...-|.+++++++.+.
T Consensus 42 ~~g~v~Df~~lk~~~~~i~~~-------lDh~~Lne~~~~~-~pT~E~ia~~i~~~l~ 91 (92)
T TIGR03367 42 EAGMVMDFSDLKAIVKEVVDR-------LDHALLNDVPGLE-NPTAENLARWIYDRLK 91 (92)
T ss_pred CccEEEEHHHHHHHHHHHHHh-------CCCcEeeCCCCCC-CCCHHHHHHHHHHHHh
Confidence 489999999999999876532 3455555555553 2356889999988764
No 88
>PRK13322 pantothenate kinase; Reviewed
Probab=59.24 E-value=14 Score=32.55 Aligned_cols=16 Identities=25% Similarity=0.179 Sum_probs=14.9
Q ss_pred eEEEEcCCCcEEEeee
Q 020526 3 AAVVDAGSKLLKAGPA 18 (325)
Q Consensus 3 ~vViD~Gs~~~k~G~a 18 (325)
-++||+|-.++|+|..
T Consensus 2 ~L~IDiGNT~iK~~l~ 17 (246)
T PRK13322 2 ILELDCGNSRLKWRVI 17 (246)
T ss_pred EEEEEeCCCcEEEEEE
Confidence 4799999999999998
No 89
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=58.78 E-value=24 Score=26.38 Aligned_cols=72 Identities=13% Similarity=0.123 Sum_probs=44.4
Q ss_pred cHHHHHHHHHHhCChHHHHhccccEEEecCCCCcc--chHHHHHHhh-ccCC-CCcceEEeCCCCCCCCCCCceeeeehh
Q 020526 218 GIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMT--GFEDRFQKEA-GLCS-SAIRPTLVKPPEYMPENLTLYSAWIGG 293 (325)
Q Consensus 218 ~i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s~~~--G~~~rl~~eL-~~~~-~~~~v~v~~~~~~~~~~~~~~~~W~G~ 293 (325)
.+.+.|.+.|..-|+ ++.-=|+..+| ||..|.-+-| ..-. .-.-++|...++ -=.|=
T Consensus 3 ~i~~~I~~~i~~n~V---------vLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~e----------iR~~l 63 (105)
T COG0278 3 EILDRIQKQIKENPV---------VLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPE----------IRQGL 63 (105)
T ss_pred hHHHHHHHHhhcCce---------EEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCHH----------HHhcc
Confidence 344555555555443 44567777777 8999999888 5442 223566666655 12344
Q ss_pred hhhhccCCCCCeeee
Q 020526 294 AILAKVVFPQNQHIT 308 (325)
Q Consensus 294 si~a~l~~~~~~~it 308 (325)
.-|++.++|++.||.
T Consensus 64 k~~s~WPT~PQLyi~ 78 (105)
T COG0278 64 KEYSNWPTFPQLYVN 78 (105)
T ss_pred HhhcCCCCCceeeEC
Confidence 556667788877775
No 90
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=56.65 E-value=13 Score=33.53 Aligned_cols=54 Identities=9% Similarity=-0.099 Sum_probs=38.9
Q ss_pred HHHHHhhhhcCCCeEEEechhhhhhhhc-------CCceEEEEEcCCCceEEEEeecCeeccc
Q 020526 105 QLVQLMFETFNISGFYSSEQAVLSLYAV-------GRISGCTVDIGHGKIDIAPVIEGAVQHI 160 (325)
Q Consensus 105 ~l~~~lfe~~~~~~v~~~~~~~~a~~~~-------g~~tglVVdiG~~~t~v~pv~~G~~i~~ 160 (325)
.+.+.+=+.+++| |.+.++.-+++++- +..+.+.|.+|. ..-..-|.+|.++..
T Consensus 87 ~l~~~l~~~~~~p-V~ieNDa~aaalaE~~~g~~~~~~~~~~l~~gt-GiG~giv~~G~l~~G 147 (303)
T PRK13310 87 PLRADLSARLGRD-VRLDNDANCFALSEAWDDEFTQYPLVMGLILGT-GVGGGLVFNGKPISG 147 (303)
T ss_pred cHHHHHHHHHCCC-eEEeccHhHHHHHHhhhccccCCCcEEEEEecC-ceEEEEEECCEEeeC
Confidence 3444555677888 88888888877642 346888999997 556677779988764
No 91
>PRK09557 fructokinase; Reviewed
Probab=56.21 E-value=1.4e+02 Score=26.89 Aligned_cols=54 Identities=19% Similarity=0.091 Sum_probs=38.2
Q ss_pred HHHHHhhhhcCCCeEEEechhhhhhhhc-------CCceEEEEEcCCCceEEEEeecCeeccc
Q 020526 105 QLVQLMFETFNISGFYSSEQAVLSLYAV-------GRISGCTVDIGHGKIDIAPVIEGAVQHI 160 (325)
Q Consensus 105 ~l~~~lfe~~~~~~v~~~~~~~~a~~~~-------g~~tglVVdiG~~~t~v~pv~~G~~i~~ 160 (325)
.+.+.+-+.+++| |.+.+++-+++++- +..+.+.+.+|. .+-..-|.+|.++..
T Consensus 87 ~l~~~l~~~~~~p-v~~~NDa~aaA~aE~~~g~~~~~~~~~~l~igt-GiG~giv~~G~l~~G 147 (301)
T PRK09557 87 PLDKDLSARLNRE-VRLANDANCLAVSEAVDGAAAGKQTVFAVIIGT-GCGAGVAINGRVHIG 147 (301)
T ss_pred CHHHHHHHHHCCC-EEEccchhHHHHHHHHhcccCCCCcEEEEEEcc-ceEEEEEECCEEEec
Confidence 3445555667887 88889888887753 246777888985 556666778988764
No 92
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=54.93 E-value=12 Score=34.96 Aligned_cols=22 Identities=18% Similarity=0.437 Sum_probs=20.9
Q ss_pred cEEEecCCCCccchHHHHHHhh
Q 020526 241 NTVLCGGTTSMTGFEDRFQKEA 262 (325)
Q Consensus 241 nIil~GG~s~~~G~~~rl~~eL 262 (325)
.|++|||++.-+-|.+||++.|
T Consensus 289 ~vlv~GGGa~N~~Lm~~L~~~l 310 (365)
T PRK09585 289 ELLVCGGGARNPTLMERLAALL 310 (365)
T ss_pred EEEEECCCcchHHHHHHHHHhc
Confidence 5999999999999999999988
No 93
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=54.81 E-value=18 Score=32.43 Aligned_cols=53 Identities=13% Similarity=0.093 Sum_probs=37.0
Q ss_pred HHHHhhhhcCCCeEEEechhhhhhhhc------CCceEEEEEcCCCceEEEEeecCeeccc
Q 020526 106 LVQLMFETFNISGFYSSEQAVLSLYAV------GRISGCTVDIGHGKIDIAPVIEGAVQHI 160 (325)
Q Consensus 106 l~~~lfe~~~~~~v~~~~~~~~a~~~~------g~~tglVVdiG~~~t~v~pv~~G~~i~~ 160 (325)
+.+.+=+.+++| |++.+++-+++++- +..+-+.|.+|+ ..-..-|.||+++..
T Consensus 88 l~~~l~~~~~~p-v~v~NDa~a~a~aE~~~g~~~~~~~~~l~ig~-GiG~giv~~G~~~~G 146 (291)
T PRK05082 88 LVQTLEQLTDLP-TIALNDAQAAAWAEYQALPDDIRNMVFITVST-GVGGGIVLNGKLLTG 146 (291)
T ss_pred hHHHHHHHhCCC-EEEECcHHHHHHHHHHhcCCCCCCEEEEEECC-CcceEEEECCEEeeC
Confidence 334444667887 88999888877642 346789999996 445556668988764
No 94
>PRK09557 fructokinase; Reviewed
Probab=54.72 E-value=17 Score=32.83 Aligned_cols=38 Identities=18% Similarity=0.327 Sum_probs=26.8
Q ss_pred cHHHHHHHHHHhCChHHHHhccccEEEecCCCCccchHHHHHHhh
Q 020526 218 GIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA 262 (325)
Q Consensus 218 ~i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL 262 (325)
-|...+.+.+.-++++. |+|.||.+..+.|.+.+++.+
T Consensus 231 ~La~~l~~l~~~ldP~~-------IvlgG~~~~~~~~~~~l~~~~ 268 (301)
T PRK09557 231 RLAKSLAHVINILDPDV-------IVLGGGMSNVDRLYPTLPALL 268 (301)
T ss_pred HHHHHHHHHHHHhCCCE-------EEEcCcccchHHHHHHHHHHH
Confidence 34555555555566554 888888888778888888888
No 95
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=54.55 E-value=78 Score=30.12 Aligned_cols=18 Identities=28% Similarity=0.340 Sum_probs=15.8
Q ss_pred CceEEEEEcCCCceEEEE
Q 020526 134 RISGCTVDIGHGKIDIAP 151 (325)
Q Consensus 134 ~~tglVVdiG~~~t~v~p 151 (325)
..|.-|+|.|+++|+++=
T Consensus 212 ~~tvgv~DLGGGSTQi~f 229 (453)
T KOG1385|consen 212 HRTVGVVDLGGGSTQITF 229 (453)
T ss_pred CCceEEEEcCCceEEEEE
Confidence 678899999999999963
No 96
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=53.08 E-value=14 Score=37.50 Aligned_cols=34 Identities=24% Similarity=0.408 Sum_probs=27.3
Q ss_pred hhhhcCCce--EEEEEcCCCceEEEEeecCeecccc
Q 020526 128 SLYAVGRIS--GCTVDIGHGKIDIAPVIEGAVQHIA 161 (325)
Q Consensus 128 a~~~~g~~t--glVVdiG~~~t~v~pv~~G~~i~~~ 161 (325)
|++-+|..+ ++++|+|..+|.+.-|.+|.+-...
T Consensus 269 Aa~ltg~~~g~~i~~DmGGTStDva~i~~G~pe~~~ 304 (674)
T COG0145 269 AAYLTGLKAGNAIVFDMGGTSTDVALIIDGEPEISS 304 (674)
T ss_pred HHHhcccccCCEEEEEcCCcceeeeeeecCcEEeec
Confidence 444447777 9999999999999999988876544
No 97
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=52.44 E-value=13 Score=30.97 Aligned_cols=47 Identities=13% Similarity=0.097 Sum_probs=34.8
Q ss_pred ccccEEEecCCCCccchHHHHHHhhccCCCCcceEEeCCCCCCCCCCCceeeeehhhhhhc
Q 020526 238 LLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAK 298 (325)
Q Consensus 238 l~~nIil~GG~s~~~G~~~rl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~ 298 (325)
-.+.|+++||.++-+-+.+.+.+-+ ..++.+...+ ..+=+|++++|.
T Consensus 149 ~~~~i~~~GG~~~n~~~~q~~Advl-----~~~V~~~~~~---------e~~a~GaA~~A~ 195 (198)
T PF02782_consen 149 PIRRIRVSGGGAKNPLWMQILADVL-----GRPVVRPEVE---------EASALGAALLAA 195 (198)
T ss_dssp CESEEEEESGGGGSHHHHHHHHHHH-----TSEEEEESSS---------THHHHHHHHHHH
T ss_pred cceeeEeccccccChHHHHHHHHHh-----CCceEeCCCC---------chHHHHHHHHHH
Confidence 4677999999999999999888777 3455555443 356678888774
No 98
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=52.34 E-value=1.7e+02 Score=26.03 Aligned_cols=66 Identities=17% Similarity=0.180 Sum_probs=38.7
Q ss_pred cHHHHHHHHHHhCChHHHHhccccEEEecCCCCccchHHHHHHhh-ccCCCCcceEEeCCCCCCCCCCCceeeeehhhhh
Q 020526 218 GIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAIL 296 (325)
Q Consensus 218 ~i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL-~~~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~ 296 (325)
.|...+.+.+.-++++. |+|.|+.+..+-|.+++++.+ +. +...++.+..... ...++-.||+.+
T Consensus 220 ~la~~l~~l~~~~dpe~-------IvlgG~~~~~~~~~~~i~~~l~~~-~~~~~~~i~~s~~------~~~~~~~GAa~~ 285 (291)
T PRK05082 220 AIARLIADLKATLDCQC-------VVLGGSVGLAEGYLELVQAYLAQE-PAIYHVPLLAAHY------RHDAGLLGAALW 285 (291)
T ss_pred HHHHHHHHHHHHhCCCE-------EEEcCccccHHHHHHHHHHHHHhc-ccccCCeEEECcc------CCchhhhhHHHH
Confidence 45555555556666654 888888777777888888777 53 2111333332222 234555677766
Q ss_pred h
Q 020526 297 A 297 (325)
Q Consensus 297 a 297 (325)
+
T Consensus 286 ~ 286 (291)
T PRK05082 286 A 286 (291)
T ss_pred h
Confidence 5
No 99
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=51.73 E-value=48 Score=27.58 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=19.8
Q ss_pred cccCCeecCHHHHHHHHHHHHHh
Q 020526 56 PVVRGFIRDWDAMEDLLHHVLYA 78 (325)
Q Consensus 56 p~~~g~i~d~~~~~~il~~~~~~ 78 (325)
-+++|.|.|.+.+.+.++.++.+
T Consensus 36 gi~~G~I~d~~~~~~~I~~ai~~ 58 (187)
T smart00842 36 GIRKGVIVDIEAAARAIREAVEE 58 (187)
T ss_pred CccCcEEECHHHHHHHHHHHHHH
Confidence 47899999999999888888864
No 100
>PRK13329 pantothenate kinase; Reviewed
Probab=49.39 E-value=1.9e+02 Score=25.55 Aligned_cols=18 Identities=33% Similarity=0.368 Sum_probs=16.0
Q ss_pred CceEEEEcCCCcEEEeee
Q 020526 1 MEAAVVDAGSKLLKAGPA 18 (325)
Q Consensus 1 m~~vViD~Gs~~~k~G~a 18 (325)
|-.++||+|-..+|.++.
T Consensus 1 ~m~LliD~GNTriKw~~~ 18 (249)
T PRK13329 1 MTFLAIDVGNTRLKWGLY 18 (249)
T ss_pred CCEEEEEcCcchheeeEe
Confidence 447899999999999998
No 101
>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=46.96 E-value=36 Score=30.21 Aligned_cols=42 Identities=10% Similarity=0.154 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcC
Q 020526 67 AMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFN 115 (325)
Q Consensus 67 ~~~~il~~~~~~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~ 115 (325)
.++.|=+++|. . +++||+|+...-++.+.+++|++++-|.||
T Consensus 77 v~~aI~~~AF~------~-s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lG 118 (257)
T cd08626 77 VIQAIKDTAFV------T-SDYPVILSFENHCSKPQQYKLAKYCEEIFG 118 (257)
T ss_pred HHHHHHHHhcc------c-CCCCEEEEEeccCCHHHHHHHHHHHHHHHh
Confidence 44555555553 3 789999999988899999999999999888
No 102
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=46.95 E-value=23 Score=25.71 Aligned_cols=18 Identities=17% Similarity=0.135 Sum_probs=16.6
Q ss_pred CceEEEEcCCCcEEEeee
Q 020526 1 MEAAVVDAGSKLLKAGPA 18 (325)
Q Consensus 1 m~~vViD~Gs~~~k~G~a 18 (325)
|+.+.||+|...+++|+.
T Consensus 1 ~~ilgiD~Ggt~i~~a~~ 18 (99)
T smart00732 1 KRVLGLDPGRKGIGVAVV 18 (99)
T ss_pred CcEEEEccCCCeEEEEEE
Confidence 778999999999999988
No 103
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=46.92 E-value=1.3e+02 Score=26.84 Aligned_cols=32 Identities=25% Similarity=0.266 Sum_probs=24.4
Q ss_pred CceEEEEcCCCcEEEeeeCCC--CCCcEecccce
Q 020526 1 MEAAVVDAGSKLLKAGPAIPD--QAPSMVIPSQM 32 (325)
Q Consensus 1 m~~vViD~Gs~~~k~G~a~gd--~~P~~~~ps~~ 32 (325)
|+.+++|+|..+.-+=+-+++ ..|+.+.|+..
T Consensus 1 mkila~DvG~GTqDi~~~d~~~EnSl~mVmPspt 34 (342)
T COG4012 1 MKILAIDVGVGTQDIVAYDGDPENSLRMVMPSPT 34 (342)
T ss_pred CceEEEEecCCceeEEEecCCcccceeEeecCch
Confidence 899999999999886444344 45778888765
No 104
>PRK13331 pantothenate kinase; Reviewed
Probab=46.69 E-value=31 Score=30.55 Aligned_cols=103 Identities=10% Similarity=0.069 Sum_probs=0.0
Q ss_pred hhhhhhhcCCceEEEEEcCCCceEEEEeecCeeccccceeecCcchhchhhhcccCCcceEECCC---------CcEEEe
Q 020526 125 AVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGDELAYEKTQKSCEIEQHTLPD---------GQVIRI 195 (325)
Q Consensus 125 ~~~a~~~~g~~tglVVdiG~~~t~v~pv~~G~~i~~~~~~~~~ge~~~~~~~~~~~~~~~~~lpd---------~~~i~l 195 (325)
...+++..-...++|||+|...|--+.-.+|.-+- .+.+|. ..+-.|
T Consensus 103 ~~vaA~~~~~~~~iVID~GTA~T~D~V~~~g~~~G------------------------G~I~PG~~l~~~AL~~~Ta~L 158 (251)
T PRK13331 103 ALWGAGQTYGFPCLVIDAGTALTFTGVDSDRTLVG------------------------GAILPGLGLQLRSLADKTAAL 158 (251)
T ss_pred HHHHHHHHhCCCEEEEECCCceEEEEEcCCCcEEE------------------------EEECccHHHHHHHHHHhhhcC
Q ss_pred cceeecc-ccccccCCCCCCcCCcHHHHHHHHHHhCChHHHHhc-cccEEEecCCCCc
Q 020526 196 GKERYTV-GEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQL-LENTVLCGGTTSM 251 (325)
Q Consensus 196 ~~e~~~~-~E~lF~p~~~~~~~~~i~~~I~~~i~~~~~d~r~~l-~~nIil~GG~s~~ 251 (325)
....... ++.++..+-.+.-..|+.....-.|+..=...++.+ --.|++|||.+.+
T Consensus 159 p~v~~~~~~~~~iG~nT~~ai~sGi~~g~~g~i~~~i~~~~~~~~~~~vi~TGG~a~~ 216 (251)
T PRK13331 159 PQVELPPPLPPRWATNTQEAIQSGVIYTILAGLRDFIEDWLSLFPDGKIVLTGGDGEL 216 (251)
T ss_pred CCCccccCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCCHHH
No 105
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=46.64 E-value=38 Score=29.48 Aligned_cols=30 Identities=13% Similarity=0.127 Sum_probs=28.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHhhhhcC
Q 020526 86 NEGQILFTDPLCSPKAVREQLVQLMFETFN 115 (325)
Q Consensus 86 ~~~~vll~~~~~~~~~~r~~l~~~lfe~~~ 115 (325)
+++||+++...-++.++++++++++-|.||
T Consensus 87 S~yPvIlslE~Hcs~~qQ~~ma~~l~~~lG 116 (229)
T cd08627 87 SEYPIILSIEDHCSIVQQRNMAQHFKKVFG 116 (229)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHHHHHHHh
Confidence 789999999988999999999999999888
No 106
>PRK14878 UGMP family protein; Provisional
Probab=45.12 E-value=13 Score=34.11 Aligned_cols=55 Identities=13% Similarity=0.164 Sum_probs=34.6
Q ss_pred cccEEEecCCCCccchHHHHHHhh-ccCCCCcceEEeCCCCCCCCCCCceeeeehhhhhhc
Q 020526 239 LENTVLCGGTTSMTGFEDRFQKEA-GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAK 298 (325)
Q Consensus 239 ~~nIil~GG~s~~~G~~~rl~~eL-~~~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~ 298 (325)
.++|+|+||.++-.-+.+++.+.+ +. .+++.-+|...++......+|.|...+..
T Consensus 242 ~~~vvlsGGVa~N~~L~~~l~~~~~~~-----g~~v~~~~~~~~~D~GimIA~~g~~~~~~ 297 (323)
T PRK14878 242 KKEVLLVGGVAANRRLREKLEIMAEDR-----GAKFYVVPPEYAGDNGAMIAYTGLLAYKH 297 (323)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHHC-----CCEEECCCCCCCchHHHHHHHHHHHHHHc
Confidence 458999999999999999999888 42 34565554322221122236666555444
No 107
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=44.09 E-value=14 Score=31.91 Aligned_cols=79 Identities=16% Similarity=0.362 Sum_probs=42.8
Q ss_pred HHHHhccccEEEecCCCCccchHHHHHHhhccCCCCcceEEeCCCCCCCCCCCceeeeehhhhhhccCCCCCeeeeHH--
Q 020526 233 ENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKA-- 310 (325)
Q Consensus 233 d~r~~l~~nIil~GG~s~~~G~~~rl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~l~~~~~~~itk~-- 310 (325)
|+-+---+.|+++|.+|. |+... .++.....+.++.++...- .|.-.+|+||.+|+.+-.-+-..+--+
T Consensus 70 DldkyAesDvviVGAGSa--GLsAA--Y~I~~~rPdlkvaIIE~SV-----aPGGGaWLGGQLFSAMvvRKPAhLFL~Ei 140 (328)
T KOG2960|consen 70 DLDKYAESDVVIVGAGSA--GLSAA--YVIAKNRPDLKVAIIESSV-----APGGGAWLGGQLFSAMVVRKPAHLFLQEI 140 (328)
T ss_pred HHHhhhccceEEECCCcc--cccee--eeeeccCCCceEEEEEeee-----cCCCcccccchhhhhhhhcChHHHHHHHh
Confidence 333444567999987762 43321 1222223345666664432 267789999999998633222112222
Q ss_pred --HHhhcCcchh
Q 020526 311 --DYDESGPSVV 320 (325)
Q Consensus 311 --ey~e~G~~~~ 320 (325)
-||++|.-.+
T Consensus 141 gvpYedegdYVV 152 (328)
T KOG2960|consen 141 GVPYEDEGDYVV 152 (328)
T ss_pred CCCcccCCCEEE
Confidence 2777775443
No 108
>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh
Probab=43.55 E-value=43 Score=29.72 Aligned_cols=30 Identities=0% Similarity=-0.026 Sum_probs=28.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHhhhhcC
Q 020526 86 NEGQILFTDPLCSPKAVREQLVQLMFETFN 115 (325)
Q Consensus 86 ~~~~vll~~~~~~~~~~r~~l~~~lfe~~~ 115 (325)
+++||+|+...-++.+.++++++++-|.||
T Consensus 87 s~yPvIlslE~Hcs~~qQ~~~a~~l~~~~G 116 (258)
T cd08630 87 SPYPVILSLENHCGLEQQAAMARHLQTILG 116 (258)
T ss_pred CCCCEEEEeeccCCHHHHHHHHHHHHHHHh
Confidence 789999999988899999999999999888
No 109
>cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-epsilon isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-epsilon represents a class of mammalian PI-PLC that has an N-terminal CDC25 homology domain with a guanyl-nucleotide exchange factor (GFF) activity, a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core
Probab=43.42 E-value=44 Score=29.61 Aligned_cols=30 Identities=3% Similarity=0.150 Sum_probs=28.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHhhhhcC
Q 020526 86 NEGQILFTDPLCSPKAVREQLVQLMFETFN 115 (325)
Q Consensus 86 ~~~~vll~~~~~~~~~~r~~l~~~lfe~~~ 115 (325)
+++||+|+...-++.+++++|++++-|.||
T Consensus 87 S~yPvIlslE~Hcs~~qQ~~ma~~l~~~~G 116 (254)
T cd08596 87 SDYPVILSIENHCSLQQQRKMAEIFKTVFG 116 (254)
T ss_pred CCCCEEEEecccCCHHHHHHHHHHHHHHHh
Confidence 789999999988899999999999999888
No 110
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=43.32 E-value=44 Score=29.04 Aligned_cols=30 Identities=13% Similarity=0.177 Sum_probs=27.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHhhhhcC
Q 020526 86 NEGQILFTDPLCSPKAVREQLVQLMFETFN 115 (325)
Q Consensus 86 ~~~~vll~~~~~~~~~~r~~l~~~lfe~~~ 115 (325)
+++||+|+...-++.+.+++|++++-|.||
T Consensus 87 s~yPvIlSlE~Hcs~~qQ~~ma~~l~~~lG 116 (227)
T cd08594 87 NEYPVILSIENHCSVQQQKKMAQYLKEILG 116 (227)
T ss_pred CCCCEEEEecccCCHHHHHHHHHHHHHHHh
Confidence 789999998888899999999999999888
No 111
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=43.03 E-value=43 Score=29.69 Aligned_cols=30 Identities=0% Similarity=-0.020 Sum_probs=28.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHhhhhcC
Q 020526 86 NEGQILFTDPLCSPKAVREQLVQLMFETFN 115 (325)
Q Consensus 86 ~~~~vll~~~~~~~~~~r~~l~~~lfe~~~ 115 (325)
+++||+|+...-++.+.+++|++++-|.||
T Consensus 87 S~yPvIlsLE~Hcs~~qQ~~ma~~l~~~lG 116 (258)
T cd08629 87 SPYPVILSLENHCSLEQQRVMARHLRAILG 116 (258)
T ss_pred CCCCEEEEeeccCCHHHHHHHHHHHHHHHH
Confidence 789999999988899999999999999888
No 112
>cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=43.02 E-value=45 Score=29.47 Aligned_cols=30 Identities=17% Similarity=0.215 Sum_probs=28.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHhhhhcC
Q 020526 86 NEGQILFTDPLCSPKAVREQLVQLMFETFN 115 (325)
Q Consensus 86 ~~~~vll~~~~~~~~~~r~~l~~~lfe~~~ 115 (325)
+++||+++...-++.+.++++++++-|.||
T Consensus 87 S~yPvIlSlE~Hcs~~qQ~~ma~~l~~~lG 116 (253)
T cd08632 87 NEFPVILSIENHCSIQQQKKIAQYLKEIFG 116 (253)
T ss_pred CCCCEEEEecccCCHHHHHHHHHHHHHHHh
Confidence 789999999988999999999999999888
No 113
>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is
Probab=42.57 E-value=43 Score=29.71 Aligned_cols=30 Identities=3% Similarity=0.008 Sum_probs=28.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHhhhhcC
Q 020526 86 NEGQILFTDPLCSPKAVREQLVQLMFETFN 115 (325)
Q Consensus 86 ~~~~vll~~~~~~~~~~r~~l~~~lfe~~~ 115 (325)
+++||+++...-++.+.++++++++-|.||
T Consensus 87 s~yPvIlslE~Hcs~~qQ~~~a~~~~~~~g 116 (257)
T cd08593 87 SPYPVILSLENHCSVEQQKVMAQHLKSILG 116 (257)
T ss_pred CCCCEEEEeeccCCHHHHHHHHHHHHHHHH
Confidence 789999999988899999999999999888
No 114
>PRK09698 D-allose kinase; Provisional
Probab=42.54 E-value=39 Score=30.41 Aligned_cols=53 Identities=21% Similarity=0.153 Sum_probs=36.5
Q ss_pred HHHHhhhhcCCCeEEEechhhhhhhhc------CCceEEEEEcCCCceEEEEeecCeeccc
Q 020526 106 LVQLMFETFNISGFYSSEQAVLSLYAV------GRISGCTVDIGHGKIDIAPVIEGAVQHI 160 (325)
Q Consensus 106 l~~~lfe~~~~~~v~~~~~~~~a~~~~------g~~tglVVdiG~~~t~v~pv~~G~~i~~ 160 (325)
+.+.+=+.+++| |.+.+++-+++++- +..+.+.|.+|.+ .-..-|.+|.++..
T Consensus 96 l~~~l~~~~~~p-v~v~NDa~aaa~~E~~~~~~~~~~~~~v~lgtG-IG~giv~~G~~~~G 154 (302)
T PRK09698 96 LADKLENTLNCP-VFFSRDVNLQLLWDVKENNLTQQLVLGAYLGTG-MGFAVWMNGAPWTG 154 (302)
T ss_pred HHHHHHHHhCCC-EEEcchHhHHHHHHHHhcCCCCceEEEEEecCc-eEEEEEECCEEeeC
Confidence 444444667887 78888887776531 3457888999974 55556778988764
No 115
>cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=41.97 E-value=48 Score=29.36 Aligned_cols=30 Identities=13% Similarity=0.195 Sum_probs=28.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHhhhhcC
Q 020526 86 NEGQILFTDPLCSPKAVREQLVQLMFETFN 115 (325)
Q Consensus 86 ~~~~vll~~~~~~~~~~r~~l~~~lfe~~~ 115 (325)
+++||+++...-++.+.++++++++-|.||
T Consensus 87 s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lG 116 (254)
T cd08633 87 NEYPVILSIENHCSVPQQKKMAQYLTEILG 116 (254)
T ss_pred CCCCEEEEecccCCHHHHHHHHHHHHHHHh
Confidence 789999999988899999999999999888
No 116
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=41.85 E-value=19 Score=33.18 Aligned_cols=63 Identities=11% Similarity=0.106 Sum_probs=40.8
Q ss_pred HHHHhccccEEEecCCCCccchHHHHHHhhccCCCCcceEEeCCCCCCCCCCCceeeeehhhhhhcc
Q 020526 233 ENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKV 299 (325)
Q Consensus 233 d~r~~l~~nIil~GG~s~~~G~~~rl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~l 299 (325)
.++..=.+.++++||.+.-..|.+++++... ...+++.-+|..++....-..+|.|...|.+-
T Consensus 256 Al~~~~~~~lvi~GGVaaN~~LR~~l~~~~~----~~g~~~~~p~~~lCtDNaaMIA~ag~~~~~~g 318 (342)
T COG0533 256 ALKHTGKKELVIAGGVAANSRLREMLEEMCK----ERGAEVYIPPLELCTDNAAMIAYAGLLRYKAG 318 (342)
T ss_pred HHHHhCCCEEEEeccHHHhHHHHHHHHHHHH----hcCCEEEcCChHhccchHHHHHHHHHHHHHcC
Confidence 3444445679999999999999998886553 22355644443232222345688888888764
No 117
>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which
Probab=41.26 E-value=47 Score=29.51 Aligned_cols=30 Identities=7% Similarity=0.093 Sum_probs=27.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHhhhhcC
Q 020526 86 NEGQILFTDPLCSPKAVREQLVQLMFETFN 115 (325)
Q Consensus 86 ~~~~vll~~~~~~~~~~r~~l~~~lfe~~~ 115 (325)
+++||+|+...-++.+.++++++++-|.||
T Consensus 87 s~yPvIlslE~Hc~~~qQ~~ma~~l~~~lG 116 (258)
T cd08631 87 SDYPVILSLENHCGVEQQQTMAQHLTEILG 116 (258)
T ss_pred CCCCEEEEeeccCCHHHHHHHHHHHHHHHH
Confidence 789999999988899999999999999887
No 118
>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta. This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y)
Probab=41.19 E-value=48 Score=29.41 Aligned_cols=30 Identities=3% Similarity=0.117 Sum_probs=28.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHhhhhcC
Q 020526 86 NEGQILFTDPLCSPKAVREQLVQLMFETFN 115 (325)
Q Consensus 86 ~~~~vll~~~~~~~~~~r~~l~~~lfe~~~ 115 (325)
+++||+|+...-++.+.++++++++-|.||
T Consensus 87 s~yPvIlslE~Hcs~~qQ~~~a~~l~~~lg 116 (257)
T cd08595 87 SDYPVVLSLENHCSTEQQEIMAHYLVSILG 116 (257)
T ss_pred CCCCEEEEeeccCCHHHHHHHHHHHHHHHH
Confidence 789999999988999999999999999887
No 119
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=40.83 E-value=50 Score=28.77 Aligned_cols=30 Identities=13% Similarity=0.164 Sum_probs=28.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHhhhhcC
Q 020526 86 NEGQILFTDPLCSPKAVREQLVQLMFETFN 115 (325)
Q Consensus 86 ~~~~vll~~~~~~~~~~r~~l~~~lfe~~~ 115 (325)
++.||+|+...-++.+.++++++++-|.||
T Consensus 87 s~yPvIlslE~Hcs~~qQ~~ma~il~~~lG 116 (229)
T cd08592 87 SEYPVILSIENHCSLPQQRNMAQAFKEVFG 116 (229)
T ss_pred CCCCEEEEEecCCCHHHHHHHHHHHHHHHh
Confidence 789999999988899999999999999888
No 120
>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod
Probab=40.64 E-value=49 Score=29.34 Aligned_cols=30 Identities=10% Similarity=0.146 Sum_probs=28.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHhhhhcC
Q 020526 86 NEGQILFTDPLCSPKAVREQLVQLMFETFN 115 (325)
Q Consensus 86 ~~~~vll~~~~~~~~~~r~~l~~~lfe~~~ 115 (325)
+++||+|+...-++.+.+++|++++-|.||
T Consensus 89 s~yPvIlslE~Hcs~~qQ~~ma~il~~~lG 118 (257)
T cd08591 89 SEYPVILSFENHCSSKQQAKMAEYCREIFG 118 (257)
T ss_pred CCCCEEEEEecCCCHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999888
No 121
>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro
Probab=39.20 E-value=54 Score=28.60 Aligned_cols=30 Identities=20% Similarity=0.341 Sum_probs=27.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHhhhhcC
Q 020526 86 NEGQILFTDPLCSPKAVREQLVQLMFETFN 115 (325)
Q Consensus 86 ~~~~vll~~~~~~~~~~r~~l~~~lfe~~~ 115 (325)
++.||+|+...-++.+.++++++++-|.||
T Consensus 87 s~yPvILslE~Hcs~~qQ~~ma~~l~~~lG 116 (231)
T cd08598 87 SPYPLILSLEVHCDAEQQERMVEIMKETFG 116 (231)
T ss_pred CCCCEEEEEecCCCHHHHHHHHHHHHHHHH
Confidence 789999999888899999999999999888
No 122
>cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins. This family corresponds to the catalytic domain present in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) and similar proteins. The higher eukaryotic PI-PLCs play a critical role in most signal transduction pathways, controlling numerous cellular events such as cell growth, proliferation, excitation and secretion. They strictly require Ca2+ for the catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated membrane phospholipids PI-analogues, phosphatidylinositol 4,5-bisphosphate (PIP2) and phosphatidylinositol-4-phosphate (PIP), to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein ki
Probab=38.82 E-value=58 Score=28.33 Aligned_cols=30 Identities=10% Similarity=0.182 Sum_probs=28.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHhhhhcC
Q 020526 86 NEGQILFTDPLCSPKAVREQLVQLMFETFN 115 (325)
Q Consensus 86 ~~~~vll~~~~~~~~~~r~~l~~~lfe~~~ 115 (325)
++.||+|+...-++.+.++++++++-+.||
T Consensus 87 s~yPvILslE~Hcs~~qQ~~ma~~l~~~lG 116 (226)
T cd08558 87 SPYPVILSLENHCSLEQQKKMAQILKEIFG 116 (226)
T ss_pred CCCCeEEEEecCCCHHHHHHHHHHHHHHHh
Confidence 789999999988899999999999999888
No 123
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=38.59 E-value=43 Score=32.34 Aligned_cols=67 Identities=18% Similarity=0.239 Sum_probs=43.2
Q ss_pred CCCCHHHHHHHHHHhhhhc-CCCe---------EEEechhhhhhh-----hcC------CceEEEEEcCCCceEEEEeec
Q 020526 96 LCSPKAVREQLVQLMFETF-NISG---------FYSSEQAVLSLY-----AVG------RISGCTVDIGHGKIDIAPVIE 154 (325)
Q Consensus 96 ~~~~~~~r~~l~~~lfe~~-~~~~---------v~~~~~~~~a~~-----~~g------~~tglVVdiG~~~t~v~pv~~ 154 (325)
..+....|+.+.+++.+.. +.|. -.+++.|-+... +-+ ...-++||+|+.+|.|-.+.+
T Consensus 189 ~ln~epaR~~I~~vF~~~Iv~akGl~~i~~~~~~~i~PTP~AV~~a~~~la~~~~~~~g~g~ll~VDIGGATTDvhSv~~ 268 (463)
T TIGR01319 189 HLNPEAAREAICDIFLKKIVEAKGLDNAEDFIGEELMPTPAAVFEAAKAIAEGTDKDDGIGDFILIDIGGATTDVHSAAA 268 (463)
T ss_pred CcCchHHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhccccccCcCCEEEEEcCccccchhhccC
Confidence 4456778888888876543 2222 234444433322 222 235699999999999999999
Q ss_pred Ceeccccc
Q 020526 155 GAVQHIAS 162 (325)
Q Consensus 155 G~~i~~~~ 162 (325)
|.+-...+
T Consensus 269 g~~~~~~~ 276 (463)
T TIGR01319 269 GELSKPDT 276 (463)
T ss_pred CCcccccc
Confidence 97765444
No 124
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=38.38 E-value=15 Score=34.07 Aligned_cols=56 Identities=14% Similarity=0.052 Sum_probs=36.1
Q ss_pred cccEEEecCCCCccchHHHHHHhhccCCCCcceEEeCCCCCCCCCCCceeeeehhhhhhc
Q 020526 239 LENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAK 298 (325)
Q Consensus 239 ~~nIil~GG~s~~~G~~~rl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~ 298 (325)
.++++++||.+.-.-|.++|++.++. ..+++.-+|-.++....-..+|.|...+..
T Consensus 264 ~~~lvv~GGVAaN~~LR~~l~~~~~~----~~~~~~~p~~~~ctDNaaMIa~~g~~~~~~ 319 (345)
T PTZ00340 264 SNEVLIVGGVGCNLRLQEMMQQMAKE----RGGKLFAMDERYCIDNGAMIAYAGLLEYLS 319 (345)
T ss_pred CCeEEEcCCHHHHHHHHHHHHHHHHH----cCCEEEeCChHhhhhhHHHHHHHHHHHHHc
Confidence 46799999999999999999876621 134554443322211134467888776655
No 125
>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein. This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment
Probab=37.76 E-value=58 Score=29.00 Aligned_cols=30 Identities=13% Similarity=0.128 Sum_probs=27.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHhhhhcC
Q 020526 86 NEGQILFTDPLCSPKAVREQLVQLMFETFN 115 (325)
Q Consensus 86 ~~~~vll~~~~~~~~~~r~~l~~~lfe~~~ 115 (325)
+++||+|+...-++.+.++++++++-|.||
T Consensus 87 s~yPvIlslE~Hc~~~qQ~~~a~~l~~~lG 116 (260)
T cd08597 87 SEYPLILCIENHCSEKQQLVMAQYLKEIFG 116 (260)
T ss_pred CCCCEEEEEecCCCHHHHHHHHHHHHHHHH
Confidence 789999999988899999999999999888
No 126
>cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 2. PI-PLC is a signaling enzyme that hydrolyze the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=36.54 E-value=63 Score=28.63 Aligned_cols=30 Identities=10% Similarity=0.193 Sum_probs=27.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHhhhhcC
Q 020526 86 NEGQILFTDPLCSPKAVREQLVQLMFETFN 115 (325)
Q Consensus 86 ~~~~vll~~~~~~~~~~r~~l~~~lfe~~~ 115 (325)
++.||+|+...-++.+.++++++++-|.||
T Consensus 87 s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lG 116 (254)
T cd08628 87 SEYPVILSIEEHCSVEQQRHMAKVFKEVFG 116 (254)
T ss_pred CCCCEEEEEeccCCHHHHHHHHHHHHHHHh
Confidence 789999999988899999999999999888
No 127
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=36.40 E-value=51 Score=30.59 Aligned_cols=74 Identities=19% Similarity=0.315 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhCChHHHHhccccEEEecCCCCccchHHHHHHhh-ccCCCCcceEEeCCCCCCCCCCCceeeeehhhhhh
Q 020526 219 IVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILA 297 (325)
Q Consensus 219 i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s~~~G~~~rl~~eL-~~~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a 297 (325)
|.+-...+|+.|+ ++.+.-+..|++||.+.-.-+..+|+... +.....++ ++|+ .+.......+|.|--++-
T Consensus 288 i~~Kt~~ai~~~~--l~~~~~~~lV~SGGVAsN~yir~~le~l~~~~n~t~i~----Pp~~-lCsDNgiMIaw~Gie~l~ 360 (405)
T KOG2707|consen 288 ISSKTHRAIKSLL--LQPKNVKQLVISGGVASNQYIRGALEKLSAAHNCTSIK----PPPS-LCSDNGIMIAWTGIEMLR 360 (405)
T ss_pred HHHHHHHHHHHhh--hcccCCceEEEcCCccchHHHHHHHHHHHHhhCCcccc----CChh-hcCCcchhhhhHHHHHHh
Confidence 3344444555555 44455556899999999999999988876 54333222 3332 222224677999988776
Q ss_pred cc
Q 020526 298 KV 299 (325)
Q Consensus 298 ~l 299 (325)
+.
T Consensus 361 ~~ 362 (405)
T KOG2707|consen 361 NG 362 (405)
T ss_pred cc
Confidence 64
No 128
>PF09693 Phage_XkdX: Phage uncharacterised protein (Phage_XkdX); InterPro: IPR010022 This entry is represented by Bacteriophage 69, Orf86. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry identifies a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=35.46 E-value=20 Score=21.87 Aligned_cols=10 Identities=50% Similarity=0.750 Sum_probs=8.8
Q ss_pred eeeeHHHHhh
Q 020526 305 QHITKADYDE 314 (325)
Q Consensus 305 ~~itk~ey~e 314 (325)
.|||++||+|
T Consensus 25 g~IT~eey~e 34 (40)
T PF09693_consen 25 GWITKEEYKE 34 (40)
T ss_pred CeECHHHHHH
Confidence 4999999987
No 129
>cd08624 PI-PLCc_beta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=34.43 E-value=68 Score=28.53 Aligned_cols=30 Identities=3% Similarity=0.040 Sum_probs=26.6
Q ss_pred CCceEEEEcCCCC-CHHHHHHHHHHhhhhcC
Q 020526 86 NEGQILFTDPLCS-PKAVREQLVQLMFETFN 115 (325)
Q Consensus 86 ~~~~vll~~~~~~-~~~~r~~l~~~lfe~~~ 115 (325)
++.||+|+...-+ +.+++++|++++-|.||
T Consensus 89 s~yPvIlslE~Hc~s~~qQ~~ma~~l~~~lG 119 (261)
T cd08624 89 SPYPVILSFENHVDSPKQQAKMAEYCRTIFG 119 (261)
T ss_pred CCCCEEEEehhcCCCHHHHHHHHHHHHHHHh
Confidence 7899999987666 78999999999999888
No 130
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=34.06 E-value=64 Score=29.13 Aligned_cols=55 Identities=13% Similarity=0.144 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhhhhcCCCeEEEechhhhhhhhcCCc-----eEEEEEcCCCceEEEEeec
Q 020526 100 KAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRI-----SGCTVDIGHGKIDIAPVIE 154 (325)
Q Consensus 100 ~~~r~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~-----tglVVdiG~~~t~v~pv~~ 154 (325)
+..-+.+++.+-+.++++.-.--.++-||..++-.+ --.|+|+|.++|...-|-.
T Consensus 94 ~l~M~~iA~~l~~~lgv~V~igGvEAemAi~GALTTPGt~~PlaIlDmG~GSTDAsii~~ 153 (332)
T PF08841_consen 94 KLQMQMIADELEEELGVPVEIGGVEAEMAILGALTTPGTDKPLAILDMGGGSTDASIINR 153 (332)
T ss_dssp S-TCHHHHHHHHHHHTSEEEEECEHHHHHHHHHTTSTT--SSEEEEEE-SSEEEEEEE-T
T ss_pred cccHHHHHHHHHHHHCCceEEccccHHHHHhcccCCCCCCCCeEEEecCCCcccHHHhCC
Confidence 344567788888899999988889999998877443 3368899999999877753
No 131
>TIGR00039 6PTHBS 6-pyruvoyl tetrahydropterin synthase/QueD family protein. This model has been downgraded from hypothetical_equivalog to subfamily. The animal enzymes are known to be 6-pyruvoyl tetrahydropterin synthase. The function of the bacterial branch of the sequence lineage had been thought to be the same, but many are now taken to be QueD, and enzyme of queuosine biosynthesis. Queuosine is a hypermodified base in the wobble position of some tRNAs in most species. A new model is built to be the QueD equivalog model.
Probab=33.43 E-value=54 Score=25.46 Aligned_cols=52 Identities=15% Similarity=0.363 Sum_probs=33.1
Q ss_pred cCCeecCHHHHHHHHHHHHHhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcC
Q 020526 58 VRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFN 115 (325)
Q Consensus 58 ~~g~i~d~~~~~~il~~~~~~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~ 115 (325)
..|.+.|+..++++++.++...| +|..+...+++.....-+.++..+++.+.
T Consensus 44 ~~G~viDf~~lk~~~~~~~~~~l------DH~~Ln~~~~~~~~pT~Enia~~i~~~l~ 95 (124)
T TIGR00039 44 KTGMVMDFSDLKKIVKEVIDEPL------DHKLLNDDVNYLENPTSENVAVYIFDNLK 95 (124)
T ss_pred CceEEEEHHHHHHHHHHHhccCC------CCceeccCCCCCCCCCHHHHHHHHHHHHH
Confidence 58999999999999988764322 34444433331112245777888887655
No 132
>PRK13328 pantothenate kinase; Reviewed
Probab=33.16 E-value=3.4e+02 Score=23.94 Aligned_cols=17 Identities=29% Similarity=0.270 Sum_probs=15.4
Q ss_pred ceEEEEcCCCcEEEeee
Q 020526 2 EAAVVDAGSKLLKAGPA 18 (325)
Q Consensus 2 ~~vViD~Gs~~~k~G~a 18 (325)
=-++||+|...+|..+.
T Consensus 2 M~LliDiGNTriKwa~~ 18 (255)
T PRK13328 2 MILLIDAGNSRIKWAWA 18 (255)
T ss_pred cEEEEEeCccceeEEEE
Confidence 36899999999999988
No 133
>PF13941 MutL: MutL protein
Probab=32.97 E-value=53 Score=31.79 Aligned_cols=67 Identities=21% Similarity=0.228 Sum_probs=44.2
Q ss_pred CCCHHHHHHHHHHhhhhc-CCCeE---------EEechhhhhh-----hhc-CCceEEEEEcCCCceEEEEeecCeeccc
Q 020526 97 CSPKAVREQLVQLMFETF-NISGF---------YSSEQAVLSL-----YAV-GRISGCTVDIGHGKIDIAPVIEGAVQHI 160 (325)
Q Consensus 97 ~~~~~~r~~l~~~lfe~~-~~~~v---------~~~~~~~~a~-----~~~-g~~tglVVdiG~~~t~v~pv~~G~~i~~ 160 (325)
.+....|+.+.+++.+.. +.|++ -++|.|-+.+ ++- +..+-+|||+|+.+|.|-.+.+|.+-..
T Consensus 194 ln~~paR~~I~~~F~~~Ii~akGl~~~~~~~~~~i~PTP~AVl~~~~lla~~~~g~llvVDIGGATTDVhSv~~~~~~~~ 273 (457)
T PF13941_consen 194 LNVEPAREAIREVFLRHIIQAKGLSKLREMVDGPIMPTPAAVLRAAELLAEGGIGDLLVVDIGGATTDVHSVAEGSPEIP 273 (457)
T ss_pred cChHHHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhcccCCEEEEEccCcccchhhhccCCcccc
Confidence 445566777777776532 22222 3455554332 233 5678899999999999999998887766
Q ss_pred cce
Q 020526 161 ASR 163 (325)
Q Consensus 161 ~~~ 163 (325)
.+.
T Consensus 274 ~~~ 276 (457)
T PF13941_consen 274 GIV 276 (457)
T ss_pred ccc
Confidence 554
No 134
>cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=32.70 E-value=78 Score=28.12 Aligned_cols=30 Identities=10% Similarity=0.020 Sum_probs=26.8
Q ss_pred CCceEEEEcCCCC-CHHHHHHHHHHhhhhcC
Q 020526 86 NEGQILFTDPLCS-PKAVREQLVQLMFETFN 115 (325)
Q Consensus 86 ~~~~vll~~~~~~-~~~~r~~l~~~lfe~~~ 115 (325)
+++||+|+...-+ +.+++++|++++-|.||
T Consensus 89 S~yPvIlSlE~Hc~s~~qQ~~ma~~l~~~lG 119 (258)
T cd08623 89 SPFPILLSFENHVDSPKQQAKMAEYCRLIFG 119 (258)
T ss_pred CCCCEEEEehhcCCCHHHHHHHHHHHHHHHh
Confidence 7899999988777 58999999999999888
No 135
>TIGR01669 phage_XkdX phage uncharacterized protein, XkdX family. This model represents a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=32.14 E-value=22 Score=22.38 Aligned_cols=10 Identities=30% Similarity=0.537 Sum_probs=8.9
Q ss_pred eeeeHHHHhh
Q 020526 305 QHITKADYDE 314 (325)
Q Consensus 305 ~~itk~ey~e 314 (325)
.|||++||+|
T Consensus 30 ~~IT~eey~e 39 (45)
T TIGR01669 30 KLITREQYKV 39 (45)
T ss_pred CccCHHHHHH
Confidence 5999999987
No 136
>PRK00976 hypothetical protein; Provisional
Probab=32.01 E-value=70 Score=29.47 Aligned_cols=35 Identities=14% Similarity=-0.021 Sum_probs=28.8
Q ss_pred hhhhhhcCCceEEEEEcCCCceEEEEeecCeecccc
Q 020526 126 VLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIA 161 (325)
Q Consensus 126 ~~a~~~~g~~tglVVdiG~~~t~v~pv~~G~~i~~~ 161 (325)
++|.+-.+..+-+|+|+|+ .|..+.|-+|+++.--
T Consensus 140 ~~a~~~~~~~~fi~~diss-ntv~~~V~~gkIvgg~ 174 (326)
T PRK00976 140 YNAYKLFGFENFIVSDISS-NTVTLLVKDGKIVGAF 174 (326)
T ss_pred HHHHhhcCCCcEEEEeccc-cEEEEEEECCEEEccc
Confidence 4455567889999999999 9999999999987643
No 137
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=31.76 E-value=44 Score=28.27 Aligned_cols=41 Identities=22% Similarity=0.439 Sum_probs=24.8
Q ss_pred cCCcHHHHHHHHHHhCChHHHHhccccEEEecCCC-----------------CccchHHHHHHhh
Q 020526 215 EAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTT-----------------SMTGFEDRFQKEA 262 (325)
Q Consensus 215 ~~~~i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s-----------------~~~G~~~rl~~eL 262 (325)
+...|.+.+.+.+.....|+ |+.|||++ .+|||.+-+...=
T Consensus 50 d~~~I~~aL~~a~~~~~~Dl-------IITTGGtg~g~rDvTpeAv~~l~~keipG~~e~~r~~s 107 (193)
T PRK09417 50 EQDLIEQTLIELVDEMGCDL-------VLTTGGTGPARRDVTPEATLAVADKEMPGFGEQMRQIS 107 (193)
T ss_pred CHHHHHHHHHHHhhcCCCCE-------EEECCCCCCCCCCcHHHHHHHHhCCcCCcHHHHHHHHh
Confidence 33456666666654212223 88888887 4788887776443
No 138
>cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=31.17 E-value=76 Score=28.22 Aligned_cols=30 Identities=3% Similarity=0.046 Sum_probs=26.4
Q ss_pred CCceEEEEcCCCC-CHHHHHHHHHHhhhhcC
Q 020526 86 NEGQILFTDPLCS-PKAVREQLVQLMFETFN 115 (325)
Q Consensus 86 ~~~~vll~~~~~~-~~~~r~~l~~~lfe~~~ 115 (325)
+++||+|+...-+ +.+++++|++++-|.||
T Consensus 89 s~yPvIlslE~Hc~s~~qQ~~ma~~l~~ilG 119 (258)
T cd08625 89 SPYPVILSFENHVDSAKQQAKMAEYCRSIFG 119 (258)
T ss_pred CCCCEEEEehhcCCCHHHHHHHHHHHHHHHH
Confidence 7799999988777 68999999999998887
No 139
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=30.90 E-value=62 Score=29.15 Aligned_cols=50 Identities=10% Similarity=0.113 Sum_probs=35.9
Q ss_pred CcHHHHHHHHHHhCCh-HHHHhccccEEEecC-CCCccchHHHHHHhhccCC
Q 020526 217 HGIVEQLVHTISTVSS-ENHRQLLENTVLCGG-TTSMTGFEDRFQKEAGLCS 266 (325)
Q Consensus 217 ~~i~~~I~~~i~~~~~-d~r~~l~~nIil~GG-~s~~~G~~~rl~~eL~~~~ 266 (325)
.+|.++|.+.|..+.. .-++.-.++|+++|| ....|.+.+++..-+....
T Consensus 208 aSLl~mV~~nIg~lA~~~a~~~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~ 259 (279)
T TIGR00555 208 ASLLGLIGNNIGQIAYLCALRYNIDRIVFIGSFLRNNQLLMKVLSYATNFWS 259 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCcccCCHHHHHHHHHHHhhcC
Confidence 3566777776655432 235556889999999 8889999999997775443
No 140
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=30.22 E-value=74 Score=27.78 Aligned_cols=25 Identities=12% Similarity=0.186 Sum_probs=21.4
Q ss_pred cCCceEEEEEcCCCceEEEEeecCe
Q 020526 132 VGRISGCTVDIGHGKIDIAPVIEGA 156 (325)
Q Consensus 132 ~g~~tglVVdiG~~~t~v~pv~~G~ 156 (325)
.|.++.+|+-+..+.|+|+...+.+
T Consensus 121 TgA~nPvvLYvSGGNTQvIAYse~r 145 (336)
T KOG2708|consen 121 TGAQNPVVLYVSGGNTQVIAYSEKR 145 (336)
T ss_pred ccCCCCEEEEEeCCceEEEEEccce
Confidence 3667889999999999999998764
No 141
>PRK03011 butyrate kinase; Provisional
Probab=29.99 E-value=44 Score=31.27 Aligned_cols=27 Identities=15% Similarity=0.292 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCceEEEEeecCeecccc
Q 020526 134 RISGCTVDIGHGKIDIAPVIEGAVQHIA 161 (325)
Q Consensus 134 ~~tglVVdiG~~~t~v~pv~~G~~i~~~ 161 (325)
..+.+++.+|.+. .+..|.||+++..+
T Consensus 175 ~~n~I~~hLGtGi-g~gai~~Gk~idgs 201 (358)
T PRK03011 175 ELNLIVAHLGGGI-SVGAHRKGRVIDVN 201 (358)
T ss_pred cCcEEEEEeCCCc-eeeEEECCEEEecC
Confidence 3488999999965 77799999998754
No 142
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=27.37 E-value=77 Score=24.25 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=17.2
Q ss_pred EEEEcCCCceEEEEeecCeecc
Q 020526 138 CTVDIGHGKIDIAPVIEGAVQH 159 (325)
Q Consensus 138 lVVdiG~~~t~v~pv~~G~~i~ 159 (325)
++||+|.+.|.++-..++..-.
T Consensus 2 ~~iDiGs~~~~~~i~~~~~~~~ 23 (120)
T PF14450_consen 2 VVIDIGSSKTKVAIAEDGSDGY 23 (120)
T ss_dssp EEEEE-SSSEEEEEEETTEEEE
T ss_pred EEEEcCCCcEEEEEEEeCCCCc
Confidence 6899999999999888765554
No 143
>cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11) encoded by PLC genes from higher plants, which are homologs of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The domain arrangement of plant PI-PLCs is structurally similar to the mammalian PLC-zeta isoform, whi
Probab=26.43 E-value=1.2e+02 Score=26.34 Aligned_cols=30 Identities=17% Similarity=0.179 Sum_probs=27.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHhhhhcC
Q 020526 86 NEGQILFTDPLCSPKAVREQLVQLMFETFN 115 (325)
Q Consensus 86 ~~~~vll~~~~~~~~~~r~~l~~~lfe~~~ 115 (325)
++.||+|+...-++.+.++++++++-+.||
T Consensus 87 s~yPvILslE~hcs~~qQ~~~a~~l~~~lG 116 (228)
T cd08599 87 SEYPVIITLENHLSPELQAKAAQILRETLG 116 (228)
T ss_pred CCCCEEEEEecCCCHHHHHHHHHHHHHHHh
Confidence 789999999888899999999999999998
No 144
>PRK13333 pantothenate kinase; Reviewed
Probab=25.40 E-value=80 Score=27.06 Aligned_cols=27 Identities=26% Similarity=0.473 Sum_probs=17.5
Q ss_pred hhhhhhcCCceEEEEEcCCCceEEEEeecC
Q 020526 126 VLSLYAVGRISGCTVDIGHGKIDIAPVIEG 155 (325)
Q Consensus 126 ~~a~~~~g~~tglVVdiG~~~t~v~pv~~G 155 (325)
.+++++. ..++|||+|...| +-.+.+|
T Consensus 77 ~~a~~aa--~~~lVIDaGTAiT-iDvv~~g 103 (206)
T PRK13333 77 IAACYAI--EDGVVVDAGSAIT-VDIMSNG 103 (206)
T ss_pred HHHhccC--CCeEEEEcCCceE-EEEEcCC
Confidence 4555544 5799999998554 4444554
No 145
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=24.77 E-value=95 Score=28.05 Aligned_cols=67 Identities=18% Similarity=0.127 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhCChHHHHhccccEEEecCCCC-ccchHHHHHHhh-ccC-CC-CcceEEeCCCCCCCCCCCceeeeehhh
Q 020526 219 IVEQLVHTISTVSSENHRQLLENTVLCGGTTS-MTGFEDRFQKEA-GLC-SS-AIRPTLVKPPEYMPENLTLYSAWIGGA 294 (325)
Q Consensus 219 i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s~-~~G~~~rl~~eL-~~~-~~-~~~v~v~~~~~~~~~~~~~~~~W~G~s 294 (325)
|..+|.+.+.-++++. |+|.|+.+. .+-|.+++++.+ +.. +. ...+.+..... ...++-+||.
T Consensus 239 L~~~i~~~~~~~dP~~-------IvlgG~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~s~~------~~~~~~~Gaa 305 (318)
T TIGR00744 239 AGAGLADLASLFNPSA-------IVLGGGLSDAGDLLLDPIRKSYKRWLFGGARQVADIIAAQL------GNDAGLVGAA 305 (318)
T ss_pred HHHHHHHHHHHhCCCE-------EEECChhhhCcHHHHHHHHHHHHHHhhhcccCCcEEEEccc------CCchhhHHHH
Confidence 4444555555455543 777777665 356888888888 432 21 12233332222 2344556777
Q ss_pred hhhc
Q 020526 295 ILAK 298 (325)
Q Consensus 295 i~a~ 298 (325)
.++-
T Consensus 306 ~~~~ 309 (318)
T TIGR00744 306 DLAR 309 (318)
T ss_pred HHHH
Confidence 6643
No 146
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=23.38 E-value=1.2e+02 Score=29.27 Aligned_cols=47 Identities=17% Similarity=0.205 Sum_probs=33.3
Q ss_pred cccEEEecCCCCccchHHHHHHhhccCCCCcceEEeCCCCCCCCCCCceeeeehhhhhhcc
Q 020526 239 LENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKV 299 (325)
Q Consensus 239 ~~nIil~GG~s~~~G~~~rl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~l 299 (325)
.+.|+++||.|+-+-+.+.+.+-+ ..++.+...+ -++=+|++++|..
T Consensus 391 ~~~i~~~GG~s~s~~~~Q~~Adv~-----g~pv~~~~~~---------e~~a~GaA~~a~~ 437 (481)
T TIGR01312 391 IQSIRLIGGGAKSPAWRQMLADIF-----GTPVDVPEGE---------EGPALGAAILAAW 437 (481)
T ss_pred cceEEEeccccCCHHHHHHHHHHh-----CCceeecCCC---------cchHHHHHHHHHH
Confidence 456999999999999988777666 3345544332 2567788888764
No 147
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=23.27 E-value=62 Score=25.74 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=17.7
Q ss_pred cCCcHHHHHHHHHHhCChHHHHhccccEEEecCCCC
Q 020526 215 EAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTS 250 (325)
Q Consensus 215 ~~~~i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s~ 250 (325)
+...|.+.+.+.+.++|. ||.+||++.
T Consensus 52 d~~~i~~~l~~~~~~~Dl---------iIttGG~g~ 78 (144)
T TIGR00177 52 DPEEIREILRKAVDEADV---------VLTTGGTGV 78 (144)
T ss_pred CHHHHHHHHHHHHhCCCE---------EEECCCCCC
Confidence 345577777666665553 788888765
No 148
>PLN02952 phosphoinositide phospholipase C
Probab=23.17 E-value=1.3e+02 Score=30.28 Aligned_cols=30 Identities=7% Similarity=0.110 Sum_probs=27.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHhhhhcC
Q 020526 86 NEGQILFTDPLCSPKAVREQLVQLMFETFN 115 (325)
Q Consensus 86 ~~~~vll~~~~~~~~~~r~~l~~~lfe~~~ 115 (325)
+++||+|+...-++..++++|++++-|.||
T Consensus 209 s~yPvIlslE~Hcs~~qQ~~~a~~~~~~~g 238 (599)
T PLN02952 209 SPYPVIITLEDHLTPDLQAKVAEMATQIFG 238 (599)
T ss_pred CCCCEEEEeecCCCHHHHHHHHHHHHHHHh
Confidence 779999999988899999999999999888
No 149
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=22.94 E-value=6.2e+02 Score=23.56 Aligned_cols=130 Identities=16% Similarity=0.169 Sum_probs=0.0
Q ss_pred ceEEEEcCCCcEEEeeeCCCCCC---cEecccceeecCCCcccccCccccccCceeccccCCeecCHHHHH---HHHHHH
Q 020526 2 EAAVVDAGSKLLKAGPAIPDQAP---SMVIPSQMKRVLEDGSSSVDNSTLVEDVTVDPVVRGFIRDWDAME---DLLHHV 75 (325)
Q Consensus 2 ~~vViD~Gs~~~k~G~a~gd~~P---~~~~ps~~~~~~~~~~~g~~~~~~~~~~~~~p~~~g~i~d~~~~~---~il~~~ 75 (325)
+.+||.+||.++|++.- .++.+ +...++.... .+.-...+.++ +.+...
T Consensus 1 ~il~in~Gsts~k~alf-~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~q~~~r~~~i~~~ 55 (351)
T TIGR02707 1 KILVINPGSTSTKLAVF-EDERPLFEETLRHSVEEL------------------------GRFKNVIDQFEFRKQVILQF 55 (351)
T ss_pred CEEEEecCchhheEEEE-eCCCceeeeeecCCHHHh------------------------cccccHHHHHHHHHHHHHHH
Q ss_pred HHhccCCCCCCCceEEEEc----------------------------CCCCCHHHHHHHHHHhhhhcCCCeEEEec----
Q 020526 76 LYAGLGWEEGNEGQILFTD----------------------------PLCSPKAVREQLVQLMFETFNISGFYSSE---- 123 (325)
Q Consensus 76 ~~~~l~~~~~~~~~vll~~----------------------------~~~~~~~~r~~l~~~lfe~~~~~~v~~~~---- 123 (325)
+.+ .++.. .+-..+.-- .+..... ..+...+++.+++|.+.|=+
T Consensus 56 l~~-~~~~~-~~i~av~~RgG~~~~v~Gg~~~v~~~~~~~l~~~~~~~~~hn~~--~~~~~~~~~~~~~p~~vfDt~fh~ 131 (351)
T TIGR02707 56 LEE-HGISI-SKLDAVVGRGGLLKPIPGGTYLVNEAMLEDLKSGKRGEHASNLG--AIIANELADELNIPAYIVDPVVVD 131 (351)
T ss_pred HHH-cCCCc-ccccEEEECCCCCceecceeEEECHHHHHHHHhcCCCCCCCCHH--HHHHHHHHHHcCCCEEEcCChhhh
Q ss_pred -----hhhhhh------------------------hhcCCc--eEEEEEcCCCceEEEEeecCeecccc
Q 020526 124 -----QAVLSL------------------------YAVGRI--SGCTVDIGHGKIDIAPVIEGAVQHIA 161 (325)
Q Consensus 124 -----~~~~a~------------------------~~~g~~--tglVVdiG~~~t~v~pv~~G~~i~~~ 161 (325)
....++ .+-+.. +-+++.+|.+.. ++.|.||+.+..+
T Consensus 132 ~~~~~a~~~alpe~~RrygfHgls~~~v~~~~~~~~g~~~~~~~~I~~hLGtGig-~~ai~~Gk~vdgs 199 (351)
T TIGR02707 132 EMEDVARISGLPEIERKSIFHALNQKAVARRIAKELGKRYEEMNLIVAHMGGGIS-VAAHRKGRVIDVN 199 (351)
T ss_pred cChHHHHHhccchhhhhhchhhhhHHHHHHHHHHHcCCCcccCCEEEEEeCCCce-eeeEECCEEEEcC
No 150
>PLN02230 phosphoinositide phospholipase C 4
Probab=22.31 E-value=1.3e+02 Score=30.35 Aligned_cols=30 Identities=10% Similarity=0.152 Sum_probs=28.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHhhhhcC
Q 020526 86 NEGQILFTDPLCSPKAVREQLVQLMFETFN 115 (325)
Q Consensus 86 ~~~~vll~~~~~~~~~~r~~l~~~lfe~~~ 115 (325)
+++||+|+...-++...+.++++++-+.||
T Consensus 200 s~yPvIlslE~hcs~~~Q~~~a~~~~~~~G 229 (598)
T PLN02230 200 SKYPVIITLEDHLTPKLQFKVAKMITQTFG 229 (598)
T ss_pred CCCCeEEEeccCCCHHHHHHHHHHHHHHHh
Confidence 789999999988999999999999999888
No 151
>KOG1386 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=22.26 E-value=7.5e+02 Score=24.26 Aligned_cols=102 Identities=14% Similarity=0.145 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHhccCCCCCCCceEEEEcCCCC---CHHHHHHHHHHhhhhcC-C-------CeEEEech-------hhh
Q 020526 66 DAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCS---PKAVREQLVQLMFETFN-I-------SGFYSSEQ-------AVL 127 (325)
Q Consensus 66 ~~~~~il~~~~~~~l~~~~~~~~~vll~~~~~~---~~~~r~~l~~~lfe~~~-~-------~~v~~~~~-------~~~ 127 (325)
+.++.+++.+- ++...+.-++.||.|....-+ +....+++.+.+-..+. . ..+.+++- -++
T Consensus 65 ~~l~pLlefA~-~~IPk~~h~~Tpl~l~ATAGMRLL~~~~qeaIl~~l~~~l~~~s~f~f~~~~a~IIsG~~EGvYgWi~ 143 (501)
T KOG1386|consen 65 VYLTPLLEFAK-EHIPKEKHKETPLFLGATAGMRLLPLAQQEAILEVLRRVLKSLSDFLFDDEWARIISGKEEGVYGWIA 143 (501)
T ss_pred HHHHHHHHHHH-hhCCHhhcCCCCeEEEecccceecCcccHHHHHHHHHHhcccccCCcccccccEEeecccceehhhHH
Confidence 35667777664 233222226778877766543 56777777777765554 1 22333332 244
Q ss_pred hhhhcC-----------CceEEEEEcCCCceEEEEeec---CeeccccceeecCc
Q 020526 128 SLYAVG-----------RISGCTVDIGHGKIDIAPVIE---GAVQHIASRRFEVG 168 (325)
Q Consensus 128 a~~~~g-----------~~tglVVdiG~~~t~v~pv~~---G~~i~~~~~~~~~g 168 (325)
+.|..| +.|-=.+|+|+++|+|+=+.. -..-...+..+.+|
T Consensus 144 ~NY~LG~f~~~~~~~~~~~T~G~lDlGGAS~QItFe~~~~~e~~~~~~~~~i~~G 198 (501)
T KOG1386|consen 144 ANYLLGRFGKKNRWDSRKETFGALDLGGASTQITFEPPNQQEEVPKENLQTINYG 198 (501)
T ss_pred HHHHHHhccccCcccCCcceeeeEecCCceeEEEEecCccccccchhhhhheecC
Confidence 555544 345567999999999986654 12223334455555
No 152
>PRK00976 hypothetical protein; Provisional
Probab=21.72 E-value=1.1e+02 Score=28.30 Aligned_cols=38 Identities=16% Similarity=0.258 Sum_probs=25.6
Q ss_pred cHHHHHHHHHHhCChHHHHhccccEEEecCCCCcc--chHHHHHHhh
Q 020526 218 GIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMT--GFEDRFQKEA 262 (325)
Q Consensus 218 ~i~~~I~~~i~~~~~d~r~~l~~nIil~GG~s~~~--G~~~rl~~eL 262 (325)
.+...|...+.-+|++. |+|.||.+..+ .+.+++++.+
T Consensus 250 ~LA~~IAnLi~llDPe~-------IVLGGGVS~~~e~~L~~~I~e~l 289 (326)
T PRK00976 250 FVAMEIASLLLLNPEDN-------VVLAGSVGEMDEPDVSERIKELL 289 (326)
T ss_pred HHHHHHHHHHHhcCCCE-------EEEcCccccCchhHHHHHHHHHh
Confidence 34444555555566554 99999999988 5666666666
No 153
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=21.68 E-value=66 Score=29.53 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=21.6
Q ss_pred cccEEEecCCCCccchHHHHHHhh
Q 020526 239 LENTVLCGGTTSMTGFEDRFQKEA 262 (325)
Q Consensus 239 ~~nIil~GG~s~~~G~~~rl~~eL 262 (325)
.++|+|+||.++-.-+.++|.+.+
T Consensus 243 ~~~lvlsGGVa~N~~L~~~l~~~l 266 (322)
T TIGR03722 243 KKEVLLVGGVAANRRLREMLELMA 266 (322)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHH
Confidence 458999999999999999999877
No 154
>PLN02228 Phosphoinositide phospholipase C
Probab=21.61 E-value=1.4e+02 Score=29.82 Aligned_cols=30 Identities=17% Similarity=0.295 Sum_probs=27.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHhhhhcC
Q 020526 86 NEGQILFTDPLCSPKAVREQLVQLMFETFN 115 (325)
Q Consensus 86 ~~~~vll~~~~~~~~~~r~~l~~~lfe~~~ 115 (325)
+++||+|+...-++..++++|++++-|.||
T Consensus 192 s~yPvIlslE~hc~~~qQ~~~a~~~~~~lg 221 (567)
T PLN02228 192 SDYPVVITLEDHLPPNLQAQVAKMLTKTFR 221 (567)
T ss_pred CCCCEEEEeecCCCHHHHHHHHHHHHHHHh
Confidence 789999999988899999999999998887
No 155
>PLN02222 phosphoinositide phospholipase C 2
Probab=21.35 E-value=1.3e+02 Score=30.18 Aligned_cols=30 Identities=10% Similarity=0.173 Sum_probs=28.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHhhhhcC
Q 020526 86 NEGQILFTDPLCSPKAVREQLVQLMFETFN 115 (325)
Q Consensus 86 ~~~~vll~~~~~~~~~~r~~l~~~lfe~~~ 115 (325)
+++||+|+...-++.+++.+|++++-|.||
T Consensus 189 s~yPvIlslE~Hc~~~qQ~~~a~~~~~~~g 218 (581)
T PLN02222 189 SDYPVVVTLEDHLTPDLQSKVAEMVTEIFG 218 (581)
T ss_pred CCCCEEEEeecCCCHHHHHHHHHHHHHHHh
Confidence 789999999988899999999999999888
No 156
>PLN02223 phosphoinositide phospholipase C
Probab=21.34 E-value=1.6e+02 Score=29.12 Aligned_cols=43 Identities=12% Similarity=0.163 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhhhcC
Q 020526 67 AMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFN 115 (325)
Q Consensus 67 ~~~~il~~~~~~~l~~~~~~~~~vll~~~~~~~~~~r~~l~~~lfe~~~ 115 (325)
.++.|=+|+|. .+ +++||+|+...-++.+.+.++++++-|.||
T Consensus 180 vl~aI~~~AF~-----~s-~~yPvIlslE~Hcs~~qQ~~~A~~l~~i~G 222 (537)
T PLN02223 180 CLDAIKEHAFT-----KC-RSYPLIITFKDGLKPDLQSKATQMIDQTFG 222 (537)
T ss_pred HHHHHHHHhhh-----cC-CCCceEEEEcccCCHHHHHHHHHHHHHHHh
Confidence 45555555553 22 489999999988999999999999998887
No 157
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=20.48 E-value=1.5e+02 Score=26.76 Aligned_cols=52 Identities=12% Similarity=0.148 Sum_probs=36.1
Q ss_pred HHHhhhhcCCCeEEEechhhhhhhhc-------CCceEEEEEcCCCceEEEEeecCeeccc
Q 020526 107 VQLMFETFNISGFYSSEQAVLSLYAV-------GRISGCTVDIGHGKIDIAPVIEGAVQHI 160 (325)
Q Consensus 107 ~~~lfe~~~~~~v~~~~~~~~a~~~~-------g~~tglVVdiG~~~t~v~pv~~G~~i~~ 160 (325)
.+.+=+.+++| |.+-+++-+++++- +..+-+.|-+|. ..-.-.|+||.++..
T Consensus 99 ~~~L~~~~~~P-v~veNDan~aalaE~~~g~~~~~~~~~~i~~gt-GIG~giv~~g~l~~G 157 (314)
T COG1940 99 AEELEARLGLP-VFVENDANAAALAEAWFGAGRGIDDVVYITLGT-GIGGGIIVNGKLLRG 157 (314)
T ss_pred HHHHHHHHCCC-EEEecHHHHHHHHHHHhCCCCCCCCEEEEEEcc-ceeEEEEECCEEeec
Confidence 33444556755 78888888887753 346788888888 456667778888774
No 158
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=20.47 E-value=68 Score=31.69 Aligned_cols=81 Identities=11% Similarity=0.145 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHhccCCCCCCC-ceEEEEcCCCCCHHHH--HHHHHHhhhhcCCCeEEEechhhh----hhhhcCCc--
Q 020526 65 WDAMEDLLHHVLYAGLGWEEGNE-GQILFTDPLCSPKAVR--EQLVQLMFETFNISGFYSSEQAVL----SLYAVGRI-- 135 (325)
Q Consensus 65 ~~~~~~il~~~~~~~l~~~~~~~-~~vll~~~~~~~~~~r--~~l~~~lfe~~~~~~v~~~~~~~~----a~~~~g~~-- 135 (325)
.+.+-.+++.++.+ .+.++ .+ -.|.++..|-.....| ...++-+-..+++|-+. ++.-.+ +.+.++..
T Consensus 49 ~~~l~~~i~~~l~~-~~~~~-~~id~iav~~gPg~~~~l~vg~~~ak~la~~~~~~~~~-v~h~~aH~~~a~~~~~~~~~ 125 (535)
T PRK09605 49 AEAIPKVIKEALEE-AGLKP-EDIDLVAFSQGPGLGPCLRVVATAARALALSLDVPLIG-VNHCVAHVEIGRLTTGAEDP 125 (535)
T ss_pred HHHHHHHHHHHHHH-cCCCH-hhCCEEEECCCCCcHhhHHHHHHHHHHHHHHhCCCeec-ccHHHHHHHHhhhccCCCCC
Confidence 34566777777754 55555 44 4566666665444444 34466677778988444 444333 33334433
Q ss_pred eEEEEEcCCCceEEE
Q 020526 136 SGCTVDIGHGKIDIA 150 (325)
Q Consensus 136 tglVVdiG~~~t~v~ 150 (325)
-+++||=| .|.+.
T Consensus 126 l~l~vsGg--~t~~~ 138 (535)
T PRK09605 126 VTLYVSGG--NTQVL 138 (535)
T ss_pred eEEEEecC--CeEEE
Confidence 34555544 44444
No 159
>cd00470 PTPS 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.
Probab=20.39 E-value=1.3e+02 Score=23.73 Aligned_cols=51 Identities=12% Similarity=0.252 Sum_probs=30.6
Q ss_pred CCeecCHHHHHHHHHHHHHhccCCCCCCCceEEEEcCC-C-CCHHHHHHHHHHhhhhcC
Q 020526 59 RGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPL-C-SPKAVREQLVQLMFETFN 115 (325)
Q Consensus 59 ~g~i~d~~~~~~il~~~~~~~l~~~~~~~~~vll~~~~-~-~~~~~r~~l~~~lfe~~~ 115 (325)
.|.+.|+..++++++..+.+.| +|..|-...+ + .....-|.+++.+|+.+.
T Consensus 57 ~GmviDF~~lk~~l~~~i~~~l------DH~~Ln~~~~~~~~~~PTaEniA~~i~~~l~ 109 (135)
T cd00470 57 TGMVMNLTDLKKAIEEAIMKPL------DHKNLDDDVPYFADVVSTTENLAVYIWDNLQ 109 (135)
T ss_pred CCEEEEHHHHHHHHHHHHHhhc------CCceeccccccccCCCCCHHHHHHHHHHHHH
Confidence 6999999999988866433333 2333322211 1 011245788888888765
No 160
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=20.29 E-value=1.7e+02 Score=28.92 Aligned_cols=47 Identities=19% Similarity=0.267 Sum_probs=31.6
Q ss_pred cccEEEecCC-CCccchHHHHHHhhccCCCCcceEEeCCCCCCCCCCCceeeeehhhhhhcc
Q 020526 239 LENTVLCGGT-TSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKV 299 (325)
Q Consensus 239 ~~nIil~GG~-s~~~G~~~rl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~W~G~si~a~l 299 (325)
.++|+++||. |+-+-+.+-+.+-+ ..+|.+...++ ++=.|++++|..
T Consensus 436 ~~~i~~~GGg~a~s~~w~Qi~Adv~-----g~pV~~~~~~e---------~~a~GaA~lA~~ 483 (536)
T TIGR01234 436 VEELMAAGGIARKNPVIMQIYADVT-----NRPLQIVASDQ---------APALGAAIFAAV 483 (536)
T ss_pred cceEEEeCCccccCHHHHHHHHHhh-----CCeeEeccCCc---------chhHHHHHHHHH
Confidence 3569999999 89888888666555 34555544433 456777777663
No 161
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=20.07 E-value=1.6e+02 Score=28.16 Aligned_cols=58 Identities=19% Similarity=0.231 Sum_probs=37.8
Q ss_pred eEEEEcCCCcEEEeeeCCCCCCcEecccceeecCCCcccccCccccccCceeccccCCeecCHHHHHHHHHHHHHh
Q 020526 3 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVTVDPVVRGFIRDWDAMEDLLHHVLYA 78 (325)
Q Consensus 3 ~vViD~Gs~~~k~G~a~gd~~P~~~~ps~~~~~~~~~~~g~~~~~~~~~~~~~p~~~g~i~d~~~~~~il~~~~~~ 78 (325)
.+.+|+||..+++=.+ +-.|...+. ..+ +| .. .-+-+++|.|.|.+...+-++.+.++
T Consensus 8 iv~LDIGTskV~~lVg--e~~~~g~i~-iig-------~g-~~-------~SrGik~G~I~di~~~~~sI~~av~~ 65 (418)
T COG0849 8 IVGLDIGTSKVKALVG--ELRPDGRLN-IIG-------VG-SH-------PSRGIKKGVIVDLDAAAQSIKKAVEA 65 (418)
T ss_pred EEEEEccCcEEEEEEE--EEcCCCeEE-EEe-------ee-cc-------cCcccccceEEcHHHHHHHHHHHHHH
Confidence 3689999999987444 545542110 000 11 10 02578899999999999999888865
Done!