BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020527
(325 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 231 bits (590), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 136/323 (42%), Positives = 193/323 (59%), Gaps = 12/323 (3%)
Query: 6 GGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQ 65
GG+ + ++ +L+ +++Y W+ + + S L++ +GA ++++L++ P
Sbjct: 267 GGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLP 326
Query: 66 FLSEGVKL--QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKST 123
F +EGV L + G ++F N+ F YP+RP VPI L+I + V A+VG SGSGKST
Sbjct: 327 F-NEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKST 385
Query: 124 FVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC--P 181
++LLLRLY+P+ G I +DG + L+ WLR KIG V QEP L I NI YG P
Sbjct: 386 VLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDP 445
Query: 182 KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAIL 239
V E+I+ A+ A FI + P G+ T+V + LLSGGQKQRIAIARA+L++P IL
Sbjct: 446 SSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKIL 505
Query: 240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXX 299
LLDEATSALD+E+E+ V+ L L + RTV+VIAHRLSTIK
Sbjct: 506 LLDEATSALDAENEYLVQEALDRLMDG----RTVLVIAHRLSTIKNANMVAVLDQGKITE 561
Query: 300 XXNHAELLHK-GRLYAKLVKRQT 321
H ELL K +Y KL+ +Q+
Sbjct: 562 YGKHEELLSKPNGIYRKLMNKQS 584
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 228 bits (582), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 139/324 (42%), Positives = 187/324 (57%), Gaps = 32/324 (9%)
Query: 1 MAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDL 60
+VL+G S+ GQ SP N+ + + GA +VF++ID
Sbjct: 332 FSVLIGAFSV--GQASP----------------------NIEAFANARGAAYEVFKIIDN 367
Query: 61 LPS-NQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGS 119
PS + F G K + G+++F NI F YPSR V IL + L +++ + VA+VG SG
Sbjct: 368 KPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGC 427
Query: 120 GKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYG 179
GKST V L+ RLY+P DG + IDG + +++R+LRE IG V QEP L I NI YG
Sbjct: 428 GKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYG 487
Query: 180 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPA 237
+DV ++IE A K+A ++FI+ LP ++TLV + LSGGQKQRIAIARA++R+P
Sbjct: 488 -REDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPK 546
Query: 238 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXX 297
ILLLDEATSALD+ESE V+ L R RT IVIAHRLST++
Sbjct: 547 ILLLDEATSALDTESEAVVQAALDKAREG----RTTIVIAHRLSTVRNADVIAGFDGGVI 602
Query: 298 XXXXNHAELLHKGRLYAKLVKRQT 321
NH EL+ + +Y KLV QT
Sbjct: 603 VEQGNHDELMREKGIYFKLVMTQT 626
Score = 213 bits (541), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 119/271 (43%), Positives = 165/271 (60%), Gaps = 8/271 (2%)
Query: 54 VFQLIDLLPS-NQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVA 112
+ ++I+ P + + ++G+K L G+VQF + F+YP+RP++P+L + L ++ + +A
Sbjct: 1004 IIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLA 1063
Query: 113 IVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDI 172
+VG SG GKST V LL R Y+P G +++DG + L+++WLR ++G V QEP L I
Sbjct: 1064 LVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSI 1123
Query: 173 KSNIMYG-CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIA 229
NI YG + V E+I AAK+A +H+FI SLP Y T V D LSGGQKQRIAIA
Sbjct: 1124 AENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIA 1183
Query: 230 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXX 289
RA++R P ILLLDEATSALD+ESE V+ L R RT IVIAHRLSTI+
Sbjct: 1184 RALVRQPHILLLDEATSALDTESEKVVQEALDKAREG----RTCIVIAHRLSTIQNADLI 1239
Query: 290 XXXXXXXXXXXXNHAELLHKGRLYAKLVKRQ 320
H +LL + +Y +V Q
Sbjct: 1240 VVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQ 1270
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 228 bits (582), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 135/323 (41%), Positives = 192/323 (59%), Gaps = 12/323 (3%)
Query: 6 GGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQ 65
GG+ + ++ +L+ +++Y W+ + + S L++ +GA ++++L++ P
Sbjct: 298 GGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLP 357
Query: 66 FLSEGVKL--QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKST 123
F +EGV L + G ++F N+ F YP+RP VPI L+I + V A+VG SGSGKST
Sbjct: 358 F-NEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKST 416
Query: 124 FVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC--P 181
++LLLRLY+P+ G I +DG + L+ WLR KIG V QEP L I NI YG P
Sbjct: 417 VLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDP 476
Query: 182 KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAIL 239
V E+I+ A+ A FI + P G+ T+V + LLSGGQKQRIAIARA+L++P IL
Sbjct: 477 SSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKIL 536
Query: 240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXX 299
LLDEATSALD+E+E+ V+ L L + RTV+VIAH LSTIK
Sbjct: 537 LLDEATSALDAENEYLVQEALDRLMDG----RTVLVIAHHLSTIKNANMVAVLDQGKITE 592
Query: 300 XXNHAELLHK-GRLYAKLVKRQT 321
H ELL K +Y KL+ +Q+
Sbjct: 593 YGKHEELLSKPNGIYRKLMNKQS 615
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 228 bits (582), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 139/324 (42%), Positives = 187/324 (57%), Gaps = 32/324 (9%)
Query: 1 MAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDL 60
+VL+G S+ GQ SP N+ + + GA +VF++ID
Sbjct: 332 FSVLIGAFSV--GQASP----------------------NIEAFANARGAAYEVFKIIDN 367
Query: 61 LPS-NQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGS 119
PS + F G K + G+++F NI F YPSR V IL + L +++ + VA+VG SG
Sbjct: 368 KPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGC 427
Query: 120 GKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYG 179
GKST V L+ RLY+P DG + IDG + +++R+LRE IG V QEP L I NI YG
Sbjct: 428 GKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYG 487
Query: 180 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPA 237
+DV ++IE A K+A ++FI+ LP ++TLV + LSGGQKQRIAIARA++R+P
Sbjct: 488 -REDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPK 546
Query: 238 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXX 297
ILLLDEATSALD+ESE V+ L R RT IVIAHRLST++
Sbjct: 547 ILLLDEATSALDTESEAVVQAALDKAREG----RTTIVIAHRLSTVRNADVIAGFDGGVI 602
Query: 298 XXXXNHAELLHKGRLYAKLVKRQT 321
NH EL+ + +Y KLV QT
Sbjct: 603 VEQGNHDELMREKGIYFKLVMTQT 626
Score = 212 bits (540), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 119/271 (43%), Positives = 165/271 (60%), Gaps = 8/271 (2%)
Query: 54 VFQLIDLLPS-NQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVA 112
+ ++I+ P + + ++G+K L G+VQF + F+YP+RP++P+L + L ++ + +A
Sbjct: 1004 IIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLA 1063
Query: 113 IVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDI 172
+VG SG GKST V LL R Y+P G +++DG + L+++WLR ++G V QEP L I
Sbjct: 1064 LVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSI 1123
Query: 173 KSNIMYG-CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIA 229
NI YG + V E+I AAK+A +H+FI SLP Y T V D LSGGQKQRIAIA
Sbjct: 1124 AENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIA 1183
Query: 230 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXX 289
RA++R P ILLLDEATSALD+ESE V+ L R RT IVIAHRLSTI+
Sbjct: 1184 RALVRQPHILLLDEATSALDTESEKVVQEALDKAREG----RTCIVIAHRLSTIQNADLI 1239
Query: 290 XXXXXXXXXXXXNHAELLHKGRLYAKLVKRQ 320
H +LL + +Y +V Q
Sbjct: 1240 VVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQ 1270
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 203 bits (516), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 120/284 (42%), Positives = 166/284 (58%), Gaps = 8/284 (2%)
Query: 41 LSSLLQSIGATEKVFQLIDLLPSNQFLSE-GVKLQRLMGHVQFVNISFHYPSRPTVPILN 99
L+ L + GA +++++D P S+ G K ++ G + N+ F YPSRP VPIL
Sbjct: 376 LAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILR 435
Query: 100 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 159
+ L + A + VA+VG SG GKST ++LLLR Y+ G+I IDG + D+++ +LR+ +
Sbjct: 436 GMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVA 495
Query: 160 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DL 217
V QEP L I+ NI G + + E++ A K A +FI +LP GY TLV D
Sbjct: 496 VVSQEPALFNCTIEENISLG-KEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQ 554
Query: 218 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIA 277
LSGGQKQRIAIARA++R+P ILLLDEATSALD+ESE G++ + RT I+IA
Sbjct: 555 LSGGQKQRIAIARALVRNPKILLLDEATSALDAESE----GIVQQALDKAAKGRTTIIIA 610
Query: 278 HRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGRLYAKLVKRQT 321
HRLSTI+ +H L+ + LY LV QT
Sbjct: 611 HRLSTIRNADLIISCKNGQVVEVGDHRALMAQQGLYYDLVTAQT 654
Score = 196 bits (499), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 114/270 (42%), Positives = 152/270 (56%), Gaps = 7/270 (2%)
Query: 54 VFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAI 113
+F ++ + LS + ++L G V F N+ F YP RP + IL + ++E + +A+
Sbjct: 1051 IFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLAL 1110
Query: 114 VGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIK 173
VG SG GKST V LL R Y+ G+I+IDG + L+ R +I V QEP L I
Sbjct: 1111 VGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIA 1170
Query: 174 SNIMYGC-PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIAR 230
NI+YG P V +E AA+ A +H FI LP G+ET V D LSGGQKQRIAIAR
Sbjct: 1171 ENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIAR 1230
Query: 231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXX 290
A++R+P ILLLDEATSALD+ESE V+ L R RT IVIAHRL+T+
Sbjct: 1231 ALVRNPKILLLDEATSALDTESEKVVQEALDRAREG----RTCIVIAHRLNTVMNADCIA 1286
Query: 291 XXXXXXXXXXXNHAELLHKGRLYAKLVKRQ 320
H +L+ + Y KL ++Q
Sbjct: 1287 VVSNGTIIEKGTHTQLMSEKGAYYKLTQKQ 1316
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 196 bits (499), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 125/314 (39%), Positives = 169/314 (53%), Gaps = 14/314 (4%)
Query: 13 GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVK 72
G ++ L +V Y E L R+V + ++L QS + ++VFQLID + + GV
Sbjct: 273 GSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID---EDYDIKNGVG 329
Query: 73 LQRL---MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 129
Q + G + ++SF Y PIL + L+IE E VA VG+SG GKST +NL+
Sbjct: 330 AQPIEIKQGRIDIDHVSFQYNDNEA-PILKDINLSIEKGETVAFVGMSGGGKSTLINLIP 388
Query: 130 RLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 189
R Y+ + GQI IDG + D LR +IG V Q+ L +K NI+ G P E +
Sbjct: 389 RFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVV 448
Query: 190 EWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSA 247
E AAK A H+FI++LP GY+T V + LSGGQKQR++IAR L +P IL+LDEATSA
Sbjct: 449 E-AAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSA 507
Query: 248 LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELL 307
LD ESE ++ L L D RT +++AHRLSTI H EL+
Sbjct: 508 LDLESESIIQEALDVLSKD----RTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELI 563
Query: 308 HKGRLYAKLVKRQT 321
K Y L Q
Sbjct: 564 AKQGAYEHLYSIQN 577
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 190 bits (483), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 112/278 (40%), Positives = 163/278 (58%), Gaps = 11/278 (3%)
Query: 46 QSIGATEKVFQLIDLLPSNQFLSEGVK-LQRLMGHVQFVNISFHYPSRPTVPILNHVCLT 104
+ + A + +F ++D S Q EG + + R G ++F N++F YP R VP L ++ L
Sbjct: 310 RGMAACQTLFAILD---SEQEKDEGKRVIDRATGDLEFRNVTFTYPGRE-VPALRNINLK 365
Query: 105 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQE 164
I A + VA+VG SGSGKST +L+ R Y+ +G I +DG L + + LR ++ V Q
Sbjct: 366 IPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQN 425
Query: 165 PQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQ 222
L + +NI Y ++ E IE AA+ AY +FI + G +T++ ++ LLSGGQ
Sbjct: 426 VHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQ 485
Query: 223 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST 282
+QRIAIARA+LRD IL+LDEATSALD+ESE ++ L L+ + RT +VIAHRLST
Sbjct: 486 RQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKN----RTSLVIAHRLST 541
Query: 283 IKAXXXXXXXXXXXXXXXXNHAELLHKGRLYAKLVKRQ 320
I+ H+ELL + +YA+L K Q
Sbjct: 542 IEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHKMQ 579
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 189 bits (481), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 112/278 (40%), Positives = 162/278 (58%), Gaps = 11/278 (3%)
Query: 46 QSIGATEKVFQLIDLLPSNQFLSEGVK-LQRLMGHVQFVNISFHYPSRPTVPILNHVCLT 104
+ + A + +F ++D S Q EG + ++R G V+F N++F YP R VP L ++ L
Sbjct: 310 RGMAACQTLFTILD---SEQEKDEGKRVIERATGDVEFRNVTFTYPGRD-VPALRNINLK 365
Query: 105 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQE 164
I A + VA+VG SGSGKST +L+ R Y+ +G+I +DG L + + LR ++ V Q
Sbjct: 366 IPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQN 425
Query: 165 PQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQ 222
L + +NI Y + E IE AA+ AY +FI + G +T++ ++ LLSGGQ
Sbjct: 426 VHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQ 485
Query: 223 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST 282
+QRIAIARA+LRD IL+LDEATSALD+ESE ++ L L+ + RT +VIAHRLST
Sbjct: 486 RQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKN----RTSLVIAHRLST 541
Query: 283 IKAXXXXXXXXXXXXXXXXNHAELLHKGRLYAKLVKRQ 320
I+ H +LL +YA+L K Q
Sbjct: 542 IEKADEIVVVEDGVIVERGTHNDLLEHRGVYAQLHKMQ 579
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 181 bits (458), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 107/281 (38%), Positives = 156/281 (55%), Gaps = 9/281 (3%)
Query: 42 SSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHV 101
S + + A + +F L+DL + + +R+ G V +++F Y + P L+HV
Sbjct: 306 SEFQRGMAACQTLFGLMDLETERD--NGKYEAERVNGEVDVKDVTFTYQGKEK-PALSHV 362
Query: 102 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 161
+I + VA+VG SGSGKST NL R Y+ G I +DG + D + LR V
Sbjct: 363 SFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALV 422
Query: 162 GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLS 219
Q L I +NI Y + E IE AA+QA+ EFI ++P G +T++ ++ LS
Sbjct: 423 SQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLS 482
Query: 220 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHR 279
GGQ+QR+AIARA+LRD +L+LDEATSALD+ESE ++ L L+ + +TV+VIAHR
Sbjct: 483 GGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKN----KTVLVIAHR 538
Query: 280 LSTIKAXXXXXXXXXXXXXXXXNHAELLHKGRLYAKLVKRQ 320
LSTI+ HA+LL + YA+L + Q
Sbjct: 539 LSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQLHRIQ 579
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 176 bits (447), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 96/245 (39%), Positives = 145/245 (59%), Gaps = 4/245 (1%)
Query: 76 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 135
L G VQF ++SF YP+RP V +L + T+ EV A+VG +GSGKST LL LY+P+
Sbjct: 11 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT 70
Query: 136 DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQ 195
GQ+ +DG PL + R+L ++ VGQEPQ+ ++ NI YG + E+I AA +
Sbjct: 71 GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVK 130
Query: 196 AYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 253
+ H FI LP GY+T VD+ LSGGQ+Q +A+ARA++R P +L+LD+ATSALD+ S+
Sbjct: 131 SGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQ 190
Query: 254 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGRLY 313
V+ +L+ + + R+V++I LS ++ H +L+ K Y
Sbjct: 191 LQVEQLLY--ESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCY 248
Query: 314 AKLVK 318
+V+
Sbjct: 249 WAMVQ 253
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 176 bits (445), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 110/247 (44%), Positives = 145/247 (58%), Gaps = 11/247 (4%)
Query: 80 VQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 138
+ F NI F Y +P P IL+++ L+I+ EV+ IVG SGSGKST L+ R Y P +GQ
Sbjct: 2 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 139 IYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYV 198
+ IDG L D WLR ++G V Q+ LL I NI P + E + +AAK A
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAAKLAGA 118
Query: 199 HEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 256
H+FI L GY T+V + LSGGQ+QRIAIARA++ +P IL+ DEATSALD ESEH +
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 257 KGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGR-LYAK 315
+H + CK RTVI+IAHRLST+K H ELL + LY+
Sbjct: 179 MRNMHKI---CKG-RTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSY 234
Query: 316 LVKRQTE 322
L + Q++
Sbjct: 235 LYQLQSD 241
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 176 bits (445), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 110/247 (44%), Positives = 145/247 (58%), Gaps = 11/247 (4%)
Query: 80 VQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 138
+ F NI F Y +P P IL+++ L+I+ EV+ IVG SGSGKST L+ R Y P +GQ
Sbjct: 8 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 139 IYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYV 198
+ IDG L D WLR ++G V Q+ LL I NI P + E + +AAK A
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAAKLAGA 124
Query: 199 HEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 256
H+FI L GY T+V + LSGGQ+QRIAIARA++ +P IL+ DEATSALD ESEH +
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 257 KGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGR-LYAK 315
+H + CK RTVI+IAHRLST+K H ELL + LY+
Sbjct: 185 MRNMHKI---CKG-RTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSY 240
Query: 316 LVKRQTE 322
L + Q++
Sbjct: 241 LYQLQSD 247
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 175 bits (444), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 110/247 (44%), Positives = 145/247 (58%), Gaps = 11/247 (4%)
Query: 80 VQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 138
+ F NI F Y +P P IL+++ L+I+ EV+ IVG SGSGKST L+ R Y P +GQ
Sbjct: 4 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 61
Query: 139 IYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYV 198
+ IDG L D WLR ++G V Q+ LL I NI P + E + +AAK A
Sbjct: 62 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAAKLAGA 120
Query: 199 HEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 256
H+FI L GY T+V + LSGGQ+QRIAIARA++ +P IL+ DEATSALD ESEH +
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 257 KGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGR-LYAK 315
+H + CK RTVI+IAHRLST+K H ELL + LY+
Sbjct: 181 MRNMHKI---CKG-RTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSY 236
Query: 316 LVKRQTE 322
L + Q++
Sbjct: 237 LYQLQSD 243
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 174 bits (442), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 109/247 (44%), Positives = 145/247 (58%), Gaps = 11/247 (4%)
Query: 80 VQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 138
+ F NI F Y +P P IL+++ L+I+ EV+ IVG SGSGKST L+ R Y P +GQ
Sbjct: 8 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 139 IYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYV 198
+ IDG L D WLR ++G V Q+ LL I NI P + E + +AAK A
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAAKLAGA 124
Query: 199 HEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 256
H+FI L GY T+V + LSGGQ+QRIAIARA++ +P IL+ D+ATSALD ESEH +
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVI 184
Query: 257 KGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGR-LYAK 315
+H + CK RTVI+IAHRLST+K H ELL + LY+
Sbjct: 185 MRNMHKI---CKG-RTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSY 240
Query: 316 LVKRQTE 322
L + Q++
Sbjct: 241 LYQLQSD 247
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 174 bits (441), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 109/247 (44%), Positives = 145/247 (58%), Gaps = 11/247 (4%)
Query: 80 VQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 138
+ F NI F Y +P P IL+++ L+I+ EV+ IVG +GSGKST L+ R Y P +GQ
Sbjct: 4 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQ 61
Query: 139 IYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYV 198
+ IDG L D WLR ++G V Q+ LL I NI P + E + +AAK A
Sbjct: 62 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAAKLAGA 120
Query: 199 HEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 256
H+FI L GY T+V + LSGGQ+QRIAIARA++ +P IL+ DEATSALD ESEH +
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 257 KGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGR-LYAK 315
+H + CK RTVI+IAHRLST+K H ELL + LY+
Sbjct: 181 MRNMHKI---CKG-RTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSY 236
Query: 316 LVKRQTE 322
L + Q++
Sbjct: 237 LYQLQSD 243
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 172 bits (436), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 109/247 (44%), Positives = 144/247 (58%), Gaps = 11/247 (4%)
Query: 80 VQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 138
+ F NI F Y +P P IL+++ L+I+ EV+ IVG SGSGKST L+ R Y P +GQ
Sbjct: 2 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 139 IYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYV 198
+ IDG L D WLR ++G V Q+ LL I NI P + E + +AAK A
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAAKLAGA 118
Query: 199 HEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 256
H+FI L GY T+V + LSGGQ+QRIAIARA++ +P IL+ DEATSALD ESEH +
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 257 KGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGR-LYAK 315
+H + CK RTVI+IA RLST+K H ELL + LY+
Sbjct: 179 MRNMHKI---CKG-RTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSY 234
Query: 316 LVKRQTE 322
L + Q++
Sbjct: 235 LYQLQSD 241
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 172 bits (436), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 109/247 (44%), Positives = 144/247 (58%), Gaps = 11/247 (4%)
Query: 80 VQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 138
+ F NI F Y +P P IL+++ L+I+ EV+ IVG SGSGKST L+ R Y P +GQ
Sbjct: 8 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 139 IYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYV 198
+ IDG L D WLR ++G V Q+ LL I NI P + E + +AAK A
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAAKLAGA 124
Query: 199 HEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 256
H+FI L GY T+V + LSGGQ+QRIAIARA++ +P IL+ DEATSALD ESEH +
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 257 KGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGR-LYAK 315
+H + CK RTVI+IA RLST+K H ELL + LY+
Sbjct: 185 MRNMHKI---CKG-RTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSY 240
Query: 316 LVKRQTE 322
L + Q++
Sbjct: 241 LYQLQSD 247
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 165 bits (418), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 100/303 (33%), Positives = 162/303 (53%), Gaps = 10/303 (3%)
Query: 20 LTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGH 79
+ ++ Y + + + + ++ + E++F+++DL + + V+L+ + G
Sbjct: 296 IATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDL-EEEKDDPDAVELREVRGE 354
Query: 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
++F N+ F Y + P+L + I+ + VA+VG +GSGK+T VNLL+R Y+ GQI
Sbjct: 355 IEFKNVWFSYDKKK--PVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQI 412
Query: 140 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVH 199
+DG + + LR IG V Q+ L +K N+ YG P +E+I+ AAK +
Sbjct: 413 LVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNP-GATDEEIKEAAKLTHSD 471
Query: 200 EFILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 257
FI LP GYET++ D+ LS GQ+Q +AI RA L +P IL+LDEATS +D+++E ++
Sbjct: 472 HFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQ 531
Query: 258 GVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGRLYAKLV 317
+ L +T I+IAHRL+TIK H EL+ K Y +L
Sbjct: 532 AAMWKLMEG----KTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYELF 587
Query: 318 KRQ 320
Q
Sbjct: 588 TSQ 590
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 164 bits (416), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 89/245 (36%), Positives = 141/245 (57%), Gaps = 4/245 (1%)
Query: 76 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 135
+ G V+F ++SF YP+ P V +L + T+ +V A+VG +GSGKST LL LY+P+
Sbjct: 13 MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 136 DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQ 195
G++ +DG PL D +L ++ VGQEP L + NI YG + E+I A +
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 196 AYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 253
+ H+FI P GY+T V + + LSGGQ+Q +A+ARA++R P +L+LD+ATSALD+ ++
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQ 192
Query: 254 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGRLY 313
V+ +L+ + RTV++I H+LS + H +L+ +G Y
Sbjct: 193 LRVQRLLY--ESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCY 250
Query: 314 AKLVK 318
+V+
Sbjct: 251 RSMVE 255
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 160 bits (406), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 88/245 (35%), Positives = 139/245 (56%), Gaps = 4/245 (1%)
Query: 76 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 135
+ G V+F ++SF YP+ P V +L + T+ +V A+VG +GSGKST LL LY+P+
Sbjct: 13 MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 136 DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQ 195
G++ +DG PL D +L ++ VGQEP L + NI YG + E+I A +
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 196 AYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 253
+ H+FI P GY+T V + + LSGGQ+Q +A+ARA++R P +L+LD ATSALD+ ++
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQ 192
Query: 254 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGRLY 313
V+ +L+ + RTV++I +LS + H +L+ +G Y
Sbjct: 193 LRVQRLLY--ESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCY 250
Query: 314 AKLVK 318
+V+
Sbjct: 251 RSMVE 255
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 158 bits (400), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 90/226 (39%), Positives = 126/226 (55%), Gaps = 6/226 (2%)
Query: 97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 156
IL + + N ++A G SG GKST +LL R Y+P+ G+I IDG P+ ++ + R
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRS 76
Query: 157 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD 216
+IGFV Q+ ++ I+ N+ YG D +ED+ A+ F+ ++P T V +
Sbjct: 77 QIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGER 136
Query: 217 --LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 274
+SGGQ+QR+AIARA LR+P IL+LDEAT++LDSESE V+ L +L RT +
Sbjct: 137 GVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK----GRTTL 192
Query: 275 VIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGRLYAKLVKRQ 320
VIAHRLSTI H EL+ LYAK V Q
Sbjct: 193 VIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQ 238
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 155 bits (392), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 86/245 (35%), Positives = 138/245 (56%), Gaps = 4/245 (1%)
Query: 76 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 135
+ G V+F ++SF YP+ P V +L + T+ +V A+VG +GSGKST LL LY+P+
Sbjct: 13 MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 136 DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQ 195
G++ +DG PL D +L ++ VGQEP L + NI YG + E+I A +
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 196 AYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 253
+ H+FI P GY+T V + + L+ GQ+Q +A+ARA++R P +L+LD ATSALD+ ++
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQ 192
Query: 254 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGRLY 313
V+ +L+ + RTV++I +LS + H +L+ +G Y
Sbjct: 193 LRVQRLLY--ESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCY 250
Query: 314 AKLVK 318
+V+
Sbjct: 251 RSMVE 255
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 155 bits (392), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 97/242 (40%), Positives = 134/242 (55%), Gaps = 11/242 (4%)
Query: 78 GHVQFVNISFHYP-SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 136
G ++F N+ F Y R T L V T+ + +A+VG SG+GKST + LL R Y+ S
Sbjct: 52 GRIEFENVHFSYADGRET---LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISS 108
Query: 137 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQA 196
G I IDG ++ + LR IG V Q+ L I NI YG N+++E AA+ A
Sbjct: 109 GCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVT-AGNDEVEAAAQAA 167
Query: 197 YVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 254
+H+ I++ P GY T V + LSGG+KQR+AIAR IL+ P I+LLDEATSALD+ +E
Sbjct: 168 GIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNER 227
Query: 255 YVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGRLYA 314
++ L + C RT IV+AHRLST+ H LL +G +YA
Sbjct: 228 AIQASLAKV---C-ANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRGGVYA 283
Query: 315 KL 316
+
Sbjct: 284 DM 285
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/245 (36%), Positives = 139/245 (56%), Gaps = 8/245 (3%)
Query: 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 138
+++F +++F YP + L + I + A+VG +GSGKST LL R Y+ ++G
Sbjct: 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD-AEGD 75
Query: 139 IYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYV 198
I I G + + +R IG V Q+ L IK NI+YG D +E++ A K A +
Sbjct: 76 IKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYG-KLDATDEEVIKATKSAQL 134
Query: 199 HEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 256
++FI +LP ++T+V + LSGG++QRIAIAR +L+DP I++ DEATS+LDS++E+
Sbjct: 135 YDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLF 194
Query: 257 KGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGRLYAKL 316
+ + LR + RT+I+IAHRLSTI + H +LL YA++
Sbjct: 195 QKAVEDLRKN----RTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEM 250
Query: 317 VKRQT 321
Q+
Sbjct: 251 WNMQS 255
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 144 bits (364), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 94/323 (29%), Positives = 172/323 (53%), Gaps = 9/323 (2%)
Query: 1 MAVL-LGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLID 59
+AVL GG+ + Q+ + Y Y ++++ + + L+ ++++ + ++V ++++
Sbjct: 262 IAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLN 321
Query: 60 LLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGS 119
P+ + + L + G V F N+ F Y T P+L+ V +++ +VA++G +GS
Sbjct: 322 EKPAIEEADNALALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGS 380
Query: 120 GKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYG 179
GKST +NL+ RL +P G++ +D + + ++ LR I V QE L IK N+ +G
Sbjct: 381 GKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWG 440
Query: 180 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPA 237
+D +++I AAK A +H+FI+SLP GY++ V+ SGGQKQR++IARA+++ P
Sbjct: 441 -REDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPK 499
Query: 238 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXX 297
+L+LD+ TS++D +E + L C T +I ++ T
Sbjct: 500 VLILDDCTSSVDPITEKRILDGLKRYTKGC----TTFIITQKIPTALLADKILVLHEGKV 555
Query: 298 XXXXNHAELLHKGRLYAKLVKRQ 320
H ELL + Y ++ + Q
Sbjct: 556 AGFGTHKELLEHCKPYREIYESQ 578
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 108/207 (52%), Gaps = 13/207 (6%)
Query: 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
+Q +++ S ++ +L + + I EVV ++G SGSGKSTF+ L L + +G+I
Sbjct: 1 LQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI 60
Query: 140 YIDGFPLT--DLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQA 196
IDG L D ++ +RE++G V Q L M + +NI P V+ +W ++A
Sbjct: 61 IIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITL-APMKVR----KWPREKA 115
Query: 197 YVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 254
L G + D LSGGQ QR+AIARA+ +P I+L DE TSALD E
Sbjct: 116 EAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVG 175
Query: 255 YVKGVLHALRNDCKTKRTVIVIAHRLS 281
V V+ L N+ T++V+ H +
Sbjct: 176 EVLSVMKQLANEG---MTMVVVTHEMG 199
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 108/207 (52%), Gaps = 13/207 (6%)
Query: 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
+Q +++ S ++ +L + + I EVV ++G SGSGKSTF+ L L + +G+I
Sbjct: 22 LQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI 81
Query: 140 YIDGFPLT--DLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQA 196
IDG L D ++ +RE++G V Q L M + +NI P V+ +W ++A
Sbjct: 82 IIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITL-APMKVR----KWPREKA 136
Query: 197 YVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 254
L G + D LSGGQ QR+AIARA+ +P I+L DE TSALD E
Sbjct: 137 EAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVG 196
Query: 255 YVKGVLHALRNDCKTKRTVIVIAHRLS 281
V V+ L N+ T++V+ H +
Sbjct: 197 EVLSVMKQLANEG---MTMVVVTHEMG 220
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 117/214 (54%), Gaps = 19/214 (8%)
Query: 80 VQFVNIS--FHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 137
++ NI+ FH +R T+ LN+V L + A ++ ++G SG+GKST + + L P++G
Sbjct: 2 IKLSNITKVFHQGTR-TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 60
Query: 138 QIYIDGFPLTDL---DIRWLREKIGFVGQEPQLLQMDIKSNIMYG---CPKDVKNEDIEW 191
+ +DG LT L ++ R +IG + Q LL S ++G P ++ N +
Sbjct: 61 SVLVDGQELTTLSESELTKARRQIGMIFQHFNLL----SSRTVFGNVALPLELDNTPKDE 116
Query: 192 AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 251
++ V E + + G + LSGGQKQR+AIARA+ +P +LL DEATSALD
Sbjct: 117 VKRR--VTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPA 174
Query: 252 SEHYVKGVLHALRN-DCKTKRTVIVIAHRLSTIK 284
+ + +L L++ + + T+++I H + +K
Sbjct: 175 T---TRSILELLKDINRRLGLTILLITHEMDVVK 205
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 111/201 (55%), Gaps = 25/201 (12%)
Query: 98 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRW 153
L +V L I+ E V+I+G SGSGKST +N++ L +P++G++YID DLD +
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 154 LREKIGFVGQEPQLLQM-----DIKSNIMYGCPKDVKNEDIEWAA----KQAYVHE-FIL 203
R+KIGFV Q+ L+ + +++ +++ + E+ A K A + E F
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFAN 140
Query: 204 SLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 263
P + LSGGQ+QR+AIARA+ +P I+L D+ T ALDS++ + +L L
Sbjct: 141 HKP---------NQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKL 191
Query: 264 RNDCKTKRTVIVIAHRLSTIK 284
+ +TV+V+ H ++ +
Sbjct: 192 NEE--DGKTVVVVTHDINVAR 210
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 109/201 (54%), Gaps = 25/201 (12%)
Query: 98 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRW 153
L +V L I+ E V+I G SGSGKST +N++ L +P++G++YID DLD +
Sbjct: 21 LKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 154 LREKIGFVGQEPQLLQM-----DIKSNIMYGCPKDVKNEDIEWAA----KQAYVHE-FIL 203
R+KIGFV Q+ L+ + +++ +++ E+ A K A + E F
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAELEERFAN 140
Query: 204 SLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 263
P + LSGGQ+QR+AIARA+ +P I+L DE T ALDS++ + +L L
Sbjct: 141 HKP---------NQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKL 191
Query: 264 RNDCKTKRTVIVIAHRLSTIK 284
+ +TV+V+ H ++ +
Sbjct: 192 NEE--DGKTVVVVTHDINVAR 210
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 118/220 (53%), Gaps = 26/220 (11%)
Query: 80 VQFVNISFHYP-SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 138
V+ N++ Y + L +V L I+ E V+I+G SGSGKST +N++ L +P++G+
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 139 IYIDGFPLTDLD----IRWLREKIGFVGQEPQLLQM-----DIKSNIMYGCPKDVKNEDI 189
+YID DLD + R+KIGFV Q+ L+ + +++ +++ + E+
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 190 EWAA----KQAYVHE-FILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEA 244
A K A + E F P + LSGGQ+QR+AIARA+ +P I+L D+
Sbjct: 122 RKRALECLKMAELEERFANHKP---------NQLSGGQQQRVAIARALANNPPIILADQP 172
Query: 245 TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK 284
T ALDS++ + +L L + +TV+V+ H ++ +
Sbjct: 173 TWALDSKTGEKIMQLLKKLNEE--DGKTVVVVTHDINVAR 210
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 118/214 (55%), Gaps = 19/214 (8%)
Query: 80 VQFVNIS--FHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 137
++ NI+ FH +R T+ LN+V L + A ++ ++G SG+GKST + + L P++G
Sbjct: 25 IKLSNITKVFHQGTR-TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 83
Query: 138 QIYIDGFPLTDL---DIRWLREKIGFVGQEPQLLQMDIKSNIMYG---CPKDVKNEDIEW 191
+ +DG LT L ++ R +IG + Q LL S ++G P ++ N +
Sbjct: 84 SVLVDGQELTTLSESELTKARRQIGMIFQHFNLL----SSRTVFGNVALPLELDNTPKDE 139
Query: 192 AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 251
++ ++ L +++ + LSGGQKQR+AIARA+ +P +LL D+ATSALD
Sbjct: 140 VKRRVTELLSLVGLGDKHDSYPSN--LSGGQKQRVAIARALASNPKVLLCDQATSALDPA 197
Query: 252 SEHYVKGVLHALRN-DCKTKRTVIVIAHRLSTIK 284
+ + +L L++ + + T+++I H + +K
Sbjct: 198 T---TRSILELLKDINRRLGLTILLITHEMDVVK 228
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 91.3 bits (225), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 117/214 (54%), Gaps = 19/214 (8%)
Query: 80 VQFVNIS--FHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 137
++ NI+ FH +R T+ LN+V L + A ++ ++G SG+GKST + + L P++G
Sbjct: 25 IKLSNITKVFHQGTR-TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 83
Query: 138 QIYIDGFPLTDL---DIRWLREKIGFVGQEPQLLQMDIKSNIMYG---CPKDVKNEDIEW 191
+ +DG LT L ++ R +IG + Q LL S ++G P ++ N +
Sbjct: 84 SVLVDGQELTTLSESELTKARRQIGXIFQHFNLL----SSRTVFGNVALPLELDNTPKDE 139
Query: 192 AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 251
++ ++ L +++ + LSGGQKQR+AIARA+ +P +LL D+ATSALD
Sbjct: 140 VKRRVTELLSLVGLGDKHDSYPSN--LSGGQKQRVAIARALASNPKVLLCDQATSALDPA 197
Query: 252 SEHYVKGVLHALRN-DCKTKRTVIVIAHRLSTIK 284
+ + +L L++ + + T+++I H +K
Sbjct: 198 T---TRSILELLKDINRRLGLTILLITHEXDVVK 228
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 100/184 (54%), Gaps = 16/184 (8%)
Query: 98 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 157
L+++ L +E+ E I+G +G+GK+ F+ L+ + P G+I +DG +TDL +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHD 73
Query: 158 IGFVGQEPQLL-QMDIKSNIMYGCP-KDVKN-EDIEWAAKQAYVHEFILSLPCGYETLVD 214
I FV Q L M++K N+ +G K +K+ + + A+ + + P
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPL------- 126
Query: 215 DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 274
LSGG++QR+A+ARA++ +P ILLLDE SALD ++ + +L L K K TV+
Sbjct: 127 --TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHK--KNKLTVL 182
Query: 275 VIAH 278
I H
Sbjct: 183 HITH 186
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 99/190 (52%), Gaps = 25/190 (13%)
Query: 98 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 157
+N + LTI+ E + ++G SG GK+T + ++ L EP++G+IY D D+ +L K
Sbjct: 28 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY-----FGDRDVTYLPPK 82
Query: 158 ---IGFVGQEPQLL-QMDIKSNIMYGC-----PKDVKNEDIEWAAKQAYVHEFILSLPCG 208
I V Q + M + NI + PKD ++ + WAA+ + E + P
Sbjct: 83 DRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQ 142
Query: 209 YETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCK 268
LSGGQ+QR+A+ARAI+ +P +LL+DE S LD++ ++ + L+ K
Sbjct: 143 ---------LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ--K 191
Query: 269 TKRTVIVIAH 278
K T I + H
Sbjct: 192 LKVTTIYVTH 201
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 99/190 (52%), Gaps = 25/190 (13%)
Query: 98 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 157
+N + LTI+ E + ++G SG GK+T + ++ L EP++G+IY D D+ +L K
Sbjct: 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY-----FGDRDVTYLPPK 81
Query: 158 ---IGFVGQEPQLL-QMDIKSNIMYGC-----PKDVKNEDIEWAAKQAYVHEFILSLPCG 208
I V Q + M + NI + PKD ++ + WAA+ + E + P
Sbjct: 82 DRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQ 141
Query: 209 YETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCK 268
LSGGQ+QR+A+ARAI+ +P +LL+DE S LD++ ++ + L+ K
Sbjct: 142 ---------LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ--K 190
Query: 269 TKRTVIVIAH 278
K T I + H
Sbjct: 191 LKVTTIYVTH 200
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 99/187 (52%), Gaps = 19/187 (10%)
Query: 98 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 157
LN++ L I+ E +A++G SGSGKST + + +Y+P+ G+IY D +T+L +
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRN 76
Query: 158 IGFVGQEPQLL-QMDIKSNIMY-----GCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET 211
+G V Q L M + NI + P++ ++ + AK ++ + + P
Sbjct: 77 VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQ--- 133
Query: 212 LVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 271
LSGGQ+QR+AIARA++++P +LLLDE S LD+ V+ L L+ +
Sbjct: 134 ------LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGI-- 185
Query: 272 TVIVIAH 278
T + + H
Sbjct: 186 TTVYVTH 192
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 88/178 (49%), Gaps = 19/178 (10%)
Query: 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139
++FV + YP + V I E+V ++G SGSGK+T + L+ L P+ G +
Sbjct: 15 IEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
Query: 140 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNIMYG-----CPKDVKNEDIEWAA 193
+I G +TDL + + +G V Q L Q M + N+ +G PKD + +
Sbjct: 73 WIGGKRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELL 130
Query: 194 KQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 251
+ + + P LSGGQ+QR+A+ARA+ P +LL DE +A+D++
Sbjct: 131 RFMRLESYANRFP---------HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 104/192 (54%), Gaps = 22/192 (11%)
Query: 97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL---TDLDIRW 153
IL + L+++ E V+I+G SGSGKST + +L L P++G+++++G + + ++
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 154 LR-EKIGFVGQE----PQLLQMD--IKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLP 206
LR K+GFV Q P+L ++ I + G PK E E+ + + + + P
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKP 138
Query: 207 CGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 266
YE LSGG++QR+AIARA+ +P +L DE T LDS + V + + N+
Sbjct: 139 --YE-------LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKI-NE 188
Query: 267 CKTKRTVIVIAH 278
T +++++ H
Sbjct: 189 GGT--SIVMVTH 198
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 102/213 (47%), Gaps = 17/213 (7%)
Query: 77 MGHVQFVNIS--FHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP 134
MG ++ VN+S FH + L +V L I E + + G +GSGKST + ++ L EP
Sbjct: 2 MGRIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP 61
Query: 135 SDGQIYIDGFPLTDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCPKDVKNEDIEWA 192
+ G + DG +IR IG Q P Q + + + + D
Sbjct: 62 TSGDVLYDGERKKGYEIR---RNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPL 118
Query: 193 AKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 250
K+A EF+ +++ D LSGG+K+R+AIA I+ +P IL+LDE LD
Sbjct: 119 VKKAM--EFV---GLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDR 173
Query: 251 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 283
E + + ++ + +TVI+I+H + T+
Sbjct: 174 EGKTDLLRIVEKWKT---LGKTVILISHDIETV 203
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 105/206 (50%), Gaps = 20/206 (9%)
Query: 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 138
++ ++SF Y +L V E ++ +VG +GSGK+T + +L L + G+
Sbjct: 11 RIELNSVSFRYNGDY---VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAA-GE 66
Query: 139 IYIDGFPLTDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQA 196
I++DG P D LR+ +G+V Q P Q++ ++ ++ + + + ++ E +
Sbjct: 67 IFLDGSPA---DPFLLRKNVGYVFQNPSSQIIGATVEEDVAFSL-EIMGLDESEMRKRIK 122
Query: 197 YVHEFILSLPCGYETLVDDDLL--SGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 254
V E + G L D L SGGQKQR+AIA + RD L LDE S LD S+
Sbjct: 123 KVLELV-----GLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQR 177
Query: 255 YVKGVLHALRNDCKTKRTVIVIAHRL 280
+ VL +L+N+ K +I++ H L
Sbjct: 178 EIFQVLESLKNEGK---GIILVTHEL 200
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 101/200 (50%), Gaps = 26/200 (13%)
Query: 98 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD---LDIRWL 154
L++V + IE E I+G SG+GK+TF+ ++ L PS G++Y D + L +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 155 REKIGFVGQE----PQLLQMDIKSNIMY-----GCPKDVKNEDIEWAAKQAYVHEFILSL 205
KIG V Q P L + NI + K+ + +E AK +H +
Sbjct: 81 DRKIGMVFQTWALYPNLTAFE---NIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHF 137
Query: 206 PCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRN 265
P LSGGQ+QR+A+ARA+++DP++LLLDE S LD+ + ++ +++
Sbjct: 138 PRE---------LSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188
Query: 266 DCKTKRTVIVIAHRLSTIKA 285
T++V++H + I A
Sbjct: 189 RLGV--TLLVVSHDPADIFA 206
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 96/197 (48%), Gaps = 24/197 (12%)
Query: 98 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL--TDLDIRWLR 155
L + + I+ EV AI+G +G GKST + +PS G+I D P+ + I LR
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 156 EKIGFVGQEP--QLLQMDIKSNIMYGC-----PKDVKNEDIEWAAKQAYVHEFILSLPCG 208
E IG V Q+P QL + ++ +G P+D + ++ A K+ G
Sbjct: 84 ESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKR-----------TG 132
Query: 209 YETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 266
E L D LS GQK+R+AIA ++ +P +L+LDE T+ LD + +L ++ +
Sbjct: 133 IEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKE 192
Query: 267 CKTKRTVIVIAHRLSTI 283
T+I+ H + +
Sbjct: 193 LGI--TIIIATHDIDIV 207
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 100/211 (47%), Gaps = 17/211 (8%)
Query: 79 HVQFVNIS--FHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 136
++ VN+S FH + L +V L I E + + G +GSGKST + ++ L EP+
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 137 GQIYIDGFPLTDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCPKDVKNEDIEWAAK 194
G + DG +IR IG Q P Q + + + + D K
Sbjct: 62 GDVLYDGERKKGYEIR---RNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVK 118
Query: 195 QAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 252
+A EF+ +++ D LSGG+K+R+AIA I+ +P IL+LDE LD E
Sbjct: 119 KAM--EFV---GLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREG 173
Query: 253 EHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 283
+ + ++ + +TVI+I+H + T+
Sbjct: 174 KTDLLRIVEKWKT---LGKTVILISHDIETV 201
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 92/180 (51%), Gaps = 20/180 (11%)
Query: 77 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 136
M ++ VN+ ++ V ++ V ++ E VA++G SG GK+T + +L +Y+P+
Sbjct: 1 MPSIRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTS 57
Query: 137 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYG-----CPKDVKNEDIE 190
G+IY D + D+ ++ ++G V Q L M + NI + KD + +
Sbjct: 58 GEIYFDDVLVNDIPPKY--REVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVV 115
Query: 191 WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 250
A++ + + P LSGGQ+QR+A+ARA+++ P +LL DE S LD+
Sbjct: 116 EIARKLLIDNLLDRKPTQ---------LSGGQQQRVALARALVKQPKVLLFDEPLSNLDA 166
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 100/200 (50%), Gaps = 26/200 (13%)
Query: 98 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD---LDIRWL 154
L++V + IE E I+G SG+GK+TF+ ++ L PS G++Y D + L +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 155 REKIGFVGQE----PQLLQMDIKSNIMY-----GCPKDVKNEDIEWAAKQAYVHEFILSL 205
KIG V Q P L + NI + K+ + +E AK +H +
Sbjct: 81 DRKIGMVFQTWALYPNLTAFE---NIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHF 137
Query: 206 PCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRN 265
P LSG Q+QR+A+ARA+++DP++LLLDE S LD+ + ++ +++
Sbjct: 138 PRE---------LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188
Query: 266 DCKTKRTVIVIAHRLSTIKA 285
T++V++H + I A
Sbjct: 189 RLGV--TLLVVSHDPADIFA 206
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 114/253 (45%), Gaps = 37/253 (14%)
Query: 77 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 136
M + N +F + +R P LN + +I +VA+VG G GKS+ ++ LL + +
Sbjct: 1 MNSITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVE 59
Query: 137 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQA 196
G + I G + +V Q+ + ++ NI++GC +E ++
Sbjct: 60 GHVAIKG-------------SVAYVPQQAWIQNDSLRENILFGC-------QLEEPYYRS 99
Query: 197 YVHEFIL-----SLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALD 249
+ L LP G T + + LSGGQKQR+++ARA+ + I L D+ SA+D
Sbjct: 100 VIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVD 159
Query: 250 SE-SEHYVKGVLHA---LRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAE 305
+ +H + V+ L+N +T I++ H +S + ++ E
Sbjct: 160 AHVGKHIFENVIGPKGMLKN-----KTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQE 214
Query: 306 LLHKGRLYAKLVK 318
LL + +A+ ++
Sbjct: 215 LLARDGAFAEFLR 227
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 84/175 (48%), Gaps = 17/175 (9%)
Query: 84 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 143
N+SF + P+L ++ L IE E++AI G +GSGK++ + L+L E S+G I G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 144 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFIL 203
++ F Q ++ IK NI++G D + K + + I
Sbjct: 100 -------------RVSFCSQFSWIMPGTIKENIIFGVSYD--EYRYKSVVKACQLQQDIT 144
Query: 204 SLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 256
T++ + LSGGQ+ RI++ARA+ +D + LLD LD +E V
Sbjct: 145 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV 199
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 84/175 (48%), Gaps = 17/175 (9%)
Query: 84 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 143
N+SF + P+L ++ L IE E++AI G +GSGK++ + L+L E S+G I G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 144 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFIL 203
++ F Q ++ IK NI++G D + K + + I
Sbjct: 100 -------------RVSFCSQFSWIMPGTIKENIIFGVSYD--EYRYKSVVKACQLQQDIT 144
Query: 204 SLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 256
T++ + LSGGQ+ RI++ARA+ +D + LLD LD +E V
Sbjct: 145 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV 199
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 92/189 (48%), Gaps = 9/189 (4%)
Query: 97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 156
IL ++ +I + V ++G +GSGKST ++ LRL ++G+I IDG + + R+
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRK 94
Query: 157 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD 216
G + Q+ + + N+ +++I A + + I P + ++ D
Sbjct: 95 AFGVIPQKVFIFSGTFRKNLDPNAAH--SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDG 152
Query: 217 --LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 274
+LS G KQ + +AR++L ILLLDE ++ LD + ++ L DC TVI
Sbjct: 153 GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADC----TVI 208
Query: 275 VIAHRLSTI 283
+ R+ +
Sbjct: 209 LCEARIEAM 217
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 87/176 (49%), Gaps = 26/176 (14%)
Query: 105 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQE 164
I+ EV+ IVG +G GK+TFV L + EP++G+I D LT V +
Sbjct: 309 IKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWD---LT-------------VAYK 352
Query: 165 PQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL--LSGGQ 222
PQ ++ D + + K I+ + + ++ L P G L D ++ LSGG+
Sbjct: 353 PQYIKADYEGTVYELLSK------IDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGE 406
Query: 223 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH 278
QR+AIA +LRD I LLDE ++ LD E V + L K ++T +V+ H
Sbjct: 407 LQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXE--KNEKTALVVEH 460
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 91/194 (46%), Gaps = 31/194 (15%)
Query: 105 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPS--------DGQIYIDGFPLTDLDIRWLRE 156
++ VV IVG +G+GKST V +L P+ DG I F +L + +
Sbjct: 44 VKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDG--VIRAFRGNELQNYFEKL 101
Query: 157 KIGFVGQ--EPQLLQMDIKSNIMYGCPKDVKNEDIEW---AAKQAYVHEFILSLPCGYET 211
K G + +PQ + + PK VK + IE A + + E + +L E
Sbjct: 102 KNGEIRPVVKPQYVDL---------IPKAVKGKVIELLKKADETGKLEEVVKALEL--EN 150
Query: 212 LVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKT 269
+++ ++ LSGG+ QR+AIA A+LR+ DE +S LD A+R +
Sbjct: 151 VLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRL---NAARAIRRLSEE 207
Query: 270 KRTVIVIAHRLSTI 283
++V+V+ H L+ +
Sbjct: 208 GKSVLVVEHDLAVL 221
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 83/175 (47%), Gaps = 17/175 (9%)
Query: 84 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 143
N+SF + P+L ++ L IE E++AI G +GSGK++ + L+L E S+G I G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 144 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFIL 203
++ F Q ++ IK NI+ G D + K + + I
Sbjct: 100 -------------RVSFCSQFSWIMPGTIKENIIRGVSYD--EYRYKSVVKACQLQQDIT 144
Query: 204 SLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 256
T++ + LSGGQ+ RI++ARA+ +D + LLD LD +E V
Sbjct: 145 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV 199
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 83/175 (47%), Gaps = 17/175 (9%)
Query: 84 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 143
N+SF + P+L ++ L IE E++AI G +GSGK++ + L+L E S+G I G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 144 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFIL 203
++ F Q ++ IK NI+ G D + K + + I
Sbjct: 100 -------------RVSFCSQFSWIMPGTIKENIISGVSYD--EYRYKSVVKACQLQQDIT 144
Query: 204 SLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 256
T++ + LSGGQ+ RI++ARA+ +D + LLD LD +E V
Sbjct: 145 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV 199
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 87/176 (49%), Gaps = 26/176 (14%)
Query: 105 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQE 164
I EV+ IVG +G GK+TFV +L + EP++G++ D LT V +
Sbjct: 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD---LT-------------VAYK 422
Query: 165 PQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL--LSGGQ 222
PQ ++ + + + K I+ + + ++ L P G L D ++ LSGG+
Sbjct: 423 PQYIKAEYEGTVYELLSK------IDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGE 476
Query: 223 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH 278
QR+AIA +LRD I LLDE ++ LD E V + L K ++T +V+ H
Sbjct: 477 LQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLME--KNEKTALVVEH 530
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 85/185 (45%), Gaps = 23/185 (12%)
Query: 110 VVAIVGLSGSGKSTFVNLLL-----RLYEPSDG-QIYIDGFPLTDLDIRWLREKIGFVGQ 163
VV IVG +G+GK+T V +L L E +D I F +L + R K G +
Sbjct: 119 VVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRP 178
Query: 164 --EPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYE-TLVDDDL--L 218
+PQ + + PK VK + E K V +F + ++D +L L
Sbjct: 179 VVKPQYVDL---------LPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQL 229
Query: 219 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH 278
SGG+ QR+AIA A+LR DE +S LD V V+ L N+ K V+V+ H
Sbjct: 230 SGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGK---AVLVVEH 286
Query: 279 RLSTI 283
L+ +
Sbjct: 287 DLAVL 291
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 87/176 (49%), Gaps = 26/176 (14%)
Query: 105 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQE 164
I EV+ IVG +G GK+TFV +L + EP++G++ D LT V +
Sbjct: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD---LT-------------VAYK 408
Query: 165 PQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL--LSGGQ 222
PQ ++ + + + K I+ + + ++ L P G L D ++ LSGG+
Sbjct: 409 PQYIKAEYEGTVYELLSK------IDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGE 462
Query: 223 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH 278
QR+AIA +LRD I LLDE ++ LD E V + L K ++T +V+ H
Sbjct: 463 LQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLME--KNEKTALVVEH 516
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 85/185 (45%), Gaps = 23/185 (12%)
Query: 110 VVAIVGLSGSGKSTFVNLLL-----RLYEPSDG-QIYIDGFPLTDLDIRWLREKIGFVGQ 163
VV IVG +G+GK+T V +L L E +D I F +L + R K G +
Sbjct: 105 VVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRP 164
Query: 164 --EPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYE-TLVDDDL--L 218
+PQ + + PK VK + E K V +F + ++D +L L
Sbjct: 165 VVKPQYVDL---------LPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQL 215
Query: 219 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH 278
SGG+ QR+AIA A+LR DE +S LD V V+ L N+ K V+V+ H
Sbjct: 216 SGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGK---AVLVVEH 272
Query: 279 RLSTI 283
L+ +
Sbjct: 273 DLAVL 277
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 82/151 (54%), Gaps = 17/151 (11%)
Query: 113 IVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMD 171
++G +G+GKS F+ L+ + +P G++ ++G +T L R IGFV Q+ L +
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFPHLS 86
Query: 172 IKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIA 229
+ NI YG ++N + ++ G L+D LSGG++QR+A+A
Sbjct: 87 VYRNIAYG----LRN----VERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALA 138
Query: 230 RAILRDPAILLLDEATSALDSESEHYVKGVL 260
RA++ P +LLLDE SA+D ++ KGVL
Sbjct: 139 RALVIQPRLLLLDEPLSAVDLKT----KGVL 165
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 101/206 (49%), Gaps = 33/206 (16%)
Query: 97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT---DLD--- 150
+L V L A +V++I+G SGSGKSTF+ + L +PS+G I ++G + D D
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80
Query: 151 -------IRWLREKIGFVGQEPQL-LQMDIKSNIM------YGCPK-DVKNEDIEWAAKQ 195
+R LR ++ V Q L M + N+M G K D + +++ AK
Sbjct: 81 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKV 140
Query: 196 AYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHY 255
P LSGGQ+QR++IARA+ +P +LL DE TSALD E
Sbjct: 141 GIDERAQGKYPVH---------LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPE---L 188
Query: 256 VKGVLHALRNDCKTKRTVIVIAHRLS 281
V VL ++ + +T++V+ H +
Sbjct: 189 VGEVLRIMQQLAEEGKTMVVVTHEMG 214
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 18/175 (10%)
Query: 84 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 143
N+SF + P+L ++ L IE E++AI G +GSGK++ + L+L E S+G I G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 144 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFIL 203
++ F Q ++ IK NI+ + + + + K + + I
Sbjct: 100 -------------RVSFCSQFSWIMPGTIKENIIGVSYDEYRYKSV---VKACQLQQDIT 143
Query: 204 SLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 256
T++ + LSGGQ+ RI++ARA+ +D + LLD LD +E V
Sbjct: 144 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV 198
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 92/192 (47%), Gaps = 17/192 (8%)
Query: 95 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID----GFPLTDLD 150
V + + L ++ E + ++G SG GK+T + ++ L EPS GQIYI P +
Sbjct: 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIF 75
Query: 151 IRWLREKIGFVGQEPQLL-QMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCG 208
+ I V Q L M + NI + + V ++I+ ++ V E + G
Sbjct: 76 VPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVRE--VAELL-----G 128
Query: 209 YETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 266
L++ LSGGQ+QR+A+ RAI+R P + L+DE S LD++ ++ L L+
Sbjct: 129 LTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQ 188
Query: 267 CKTKRTVIVIAH 278
T I + H
Sbjct: 189 LGV--TTIYVTH 198
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 90/194 (46%), Gaps = 24/194 (12%)
Query: 95 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL 154
P+L + IE +++A+ G +G+GK++ + +++ EPS+G+I G
Sbjct: 33 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----------- 81
Query: 155 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD 214
+I F Q ++ IK NI++G D K + E I ++
Sbjct: 82 --RISFCSQFSWIMPGTIKENIIFGVSYD--EYRYRSVIKACQLEEDISKFAEKDNIVLG 137
Query: 215 DD--LLSGGQKQRIAIARAILRDPAILLLDEATSALD--SESEHYVKGVLHALRNDCKTK 270
+ LSGGQ+ RI++ARA+ +D + LLD LD +E E + V + N
Sbjct: 138 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN----- 192
Query: 271 RTVIVIAHRLSTIK 284
+T I++ ++ +K
Sbjct: 193 KTRILVTSKMEHLK 206
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 109/208 (52%), Gaps = 24/208 (11%)
Query: 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 138
H+ ++ SF P+LN + L+++ E++ I+G SG GK+T + L +P G+
Sbjct: 6 HIGHLSKSFQ-----NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGE 60
Query: 139 IYIDGFPL----TDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAA 193
I + G + T+L +R R +G++ QE L + + NI YG + N A
Sbjct: 61 ISLSGKTIFSKNTNLPVRERR--LGYLVQEGVLFPHLTVYRNIAYG----LGNGKGRTAQ 114
Query: 194 KQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 251
++ + E +L L G L LSGGQ+QR A+ARA+ DP ++LLDE SALD +
Sbjct: 115 ERQRI-EAMLEL-TGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQ 172
Query: 252 SEHYVK-GVLHALRNDCKTKRTVIVIAH 278
++ ++ ALR + K + + ++H
Sbjct: 173 LRRQIREDMIAALRANGK---SAVFVSH 197
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 90/194 (46%), Gaps = 24/194 (12%)
Query: 95 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL 154
P+L + IE +++A+ G +G+GK++ + +++ EPS+G+I G
Sbjct: 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----------- 69
Query: 155 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD 214
+I F Q ++ IK NI++G D K + E I ++
Sbjct: 70 --RISFCSQFSWIMPGTIKENIIFGVSYD--EYRYRSVIKACQLEEDISKFAEKDNIVLG 125
Query: 215 DD--LLSGGQKQRIAIARAILRDPAILLLDEATSALD--SESEHYVKGVLHALRNDCKTK 270
+ LSGGQ+ RI++ARA+ +D + LLD LD +E E + V + N
Sbjct: 126 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN----- 180
Query: 271 RTVIVIAHRLSTIK 284
+T I++ ++ +K
Sbjct: 181 KTRILVTSKMEHLK 194
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 94/205 (45%), Gaps = 24/205 (11%)
Query: 84 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 143
++SF S P+L + IE +++A+ G +G+GK++ + +++ EPS+G+I G
Sbjct: 40 SLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 99
Query: 144 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFIL 203
+I F Q ++ IK NI+ G D K + E I
Sbjct: 100 -------------RISFCSQFSWIMPGTIKENIIAGVSYDEYR--YRSVIKACQLEEDIS 144
Query: 204 SLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALD--SESEHYVKGV 259
++ + LSGGQ+ RI++ARA+ +D + LLD LD +E E + V
Sbjct: 145 KFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 204
Query: 260 LHALRNDCKTKRTVIVIAHRLSTIK 284
+ N +T I++ ++ +K
Sbjct: 205 CKLMAN-----KTRILVTSKMEHLK 224
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 85/177 (48%), Gaps = 17/177 (9%)
Query: 94 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS----DGQIYIDGFPLTDL 149
T+ + + L I N V AIVG S SGKST + + + P+ G++ G L +
Sbjct: 20 TIKAADGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTM 79
Query: 150 ------DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQ--AYVHEF 201
IRW ++I V Q Q ++ ++ V+ + W+ + E
Sbjct: 80 REEELRKIRW--KEIALVPQAAQQ-SLNPTMKVIEHFKDTVEAHGVRWSHSELIEKASEK 136
Query: 202 ILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 256
+ + E +++ LSGG KQR+ IA A+L DP +L+LDE TSALD ++ ++
Sbjct: 137 LRMVRLNPEAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHI 193
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 92/208 (44%), Gaps = 22/208 (10%)
Query: 77 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 136
M VQ N++ + V + + L I E V VG SG GKST + ++ L +
Sbjct: 1 MASVQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITS 57
Query: 137 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYG-----CPKDVKNEDIE 190
G ++I + D +G V Q L + + N+ +G K+V N+ +
Sbjct: 58 GDLFIGEKRMNDTP--PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVN 115
Query: 191 WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 250
A+ + + P LSGGQ+QR+AI R ++ +P++ LLDE S LD+
Sbjct: 116 QVAEVLQLAHLLDRKP---------KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA 166
Query: 251 ESEHYVKGVLHALRNDCKTKRTVIVIAH 278
V+ + R + RT+I + H
Sbjct: 167 ALR--VQMRIEISRLHKRLGRTMIYVTH 192
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 92/208 (44%), Gaps = 22/208 (10%)
Query: 77 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 136
M VQ N++ + V + + L I E V VG SG GKST + ++ L +
Sbjct: 1 MASVQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITS 57
Query: 137 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYG-----CPKDVKNEDIE 190
G ++I + D +G V Q L + + N+ +G K+V N+ +
Sbjct: 58 GDLFIGEKRMNDTP--PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVN 115
Query: 191 WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 250
A+ + + P LSGGQ+QR+AI R ++ +P++ LLDE S LD+
Sbjct: 116 QVAEVLQLAHLLDRKPKA---------LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA 166
Query: 251 ESEHYVKGVLHALRNDCKTKRTVIVIAH 278
V+ + R + RT+I + H
Sbjct: 167 ALR--VQMRIEISRLHKRLGRTMIYVTH 192
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 77/160 (48%), Gaps = 13/160 (8%)
Query: 97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 156
++N V L I + E+VAI+G +G+GKST + LL PS G+ ++ G L + L
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALAR 85
Query: 157 KIGFVGQEPQL-LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD 215
+ Q +L + I G ++D +QA + + + C D
Sbjct: 86 TRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQD-----RQA-LQQVMAQTDCLALAQRDY 139
Query: 216 DLLSGGQKQRIAIARAILR------DPAILLLDEATSALD 249
+LSGG++QR+ +AR + + P L LDE TSALD
Sbjct: 140 RVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALD 179
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 93/216 (43%), Gaps = 44/216 (20%)
Query: 84 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 143
N+ F+Y + + + + +++A++G +G GKST ++LLL ++ P G+I +
Sbjct: 9 NLGFYYQAENF--LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV-- 64
Query: 144 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFIL 203
+ IGFV Q + P DI + +++ F
Sbjct: 65 -----------YQSIGFVPQ-------------FFSSPFAYSVLDIVLMGRSTHINTFAK 100
Query: 204 SLPCGYETLVD--DDL------------LSGGQKQRIAIARAILRDPAILLLDEATSALD 249
Y+ + D L LSGGQ+Q I IARAI + ++LLDE TSALD
Sbjct: 101 PKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALD 160
Query: 250 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA 285
++ V +L L TV+ H+ + + A
Sbjct: 161 LANQDIVLSLLIDLAQS--QNMTVVFTTHQPNQVVA 194
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 101/206 (49%), Gaps = 32/206 (15%)
Query: 98 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 157
L+ V +++ +V I+G +GSGKST +N++ + +G++Y + +T+ + L
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH- 81
Query: 158 IGFVG--QEPQ-LLQMDIKSNIMYG--CPKD-----------VKNEDIEWAAKQAYVHEF 201
G V Q PQ L +M + N++ G CP + + E+ E K + EF
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEE-EMVEKAFKILEF 140
Query: 202 ILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLH 261
L L Y+ + LSGGQ + + I RA++ +P ++++DE + + G+ H
Sbjct: 141 -LKLSHLYDRKAGE--LSGGQMKLVEIGRALMTNPKMIVMDEPIAGV-------APGLAH 190
Query: 262 ALRN---DCKTKR-TVIVIAHRLSTI 283
+ N + K K T ++I HRL +
Sbjct: 191 DIFNHVLELKAKGITFLIIEHRLDIV 216
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 97/207 (46%), Gaps = 29/207 (14%)
Query: 84 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 143
++SF S P+L + IE +++A+ G +G+GK++ + +++ EPS+G+I G
Sbjct: 40 SLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 99
Query: 144 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAA--KQAYVHEF 201
+I F Q ++ IK NI+ V ++ + + K + E
Sbjct: 100 -------------RISFCSQNSWIMPGTIKENII-----GVSYDEYRYRSVIKACQLEED 141
Query: 202 ILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALD--SESEHYVK 257
I ++ + LSGGQ+ RI++ARA+ +D + LLD LD +E E +
Sbjct: 142 ISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFES 201
Query: 258 GVLHALRNDCKTKRTVIVIAHRLSTIK 284
V + N +T I++ ++ +K
Sbjct: 202 CVCKLMAN-----KTRILVTSKMEHLK 223
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 92/208 (44%), Gaps = 22/208 (10%)
Query: 77 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 136
M VQ N++ + V + + L I E V VG SG GKST + ++ L +
Sbjct: 1 MASVQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITS 57
Query: 137 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYG-----CPKDVKNEDIE 190
G ++I + D +G V Q L + + N+ +G K+V N+ +
Sbjct: 58 GDLFIGEKRMNDTP--PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVN 115
Query: 191 WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 250
A+ + + P LSGGQ+QR+AI R ++ +P++ LLD+ S LD+
Sbjct: 116 QVAEVLQLAHLLDRKP---------KALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDA 166
Query: 251 ESEHYVKGVLHALRNDCKTKRTVIVIAH 278
V+ + R + RT+I + H
Sbjct: 167 ALR--VQMRIEISRLHKRLGRTMIYVTH 192
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 92/196 (46%), Gaps = 29/196 (14%)
Query: 95 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL 154
P+L + IE +++A+ G +G+GK++ + +++ EPS+G+I G
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----------- 99
Query: 155 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAA--KQAYVHEFILSLPCGYETL 212
+I F Q ++ IK NI+ V ++ + + K + E I +
Sbjct: 100 --RISFCSQNSWIMPGTIKENII-----GVSYDEYRYRSVIKACQLEEDISKFAEKDNIV 152
Query: 213 VDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALD--SESEHYVKGVLHALRNDCK 268
+ + LSGGQ+ RI++ARA+ +D + LLD LD +E E + V + N
Sbjct: 153 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN--- 209
Query: 269 TKRTVIVIAHRLSTIK 284
+T I++ ++ +K
Sbjct: 210 --KTRILVTSKMEHLK 223
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 86/194 (44%), Gaps = 21/194 (10%)
Query: 95 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD---- 150
V + + L I+ E + ++G SG GK+T + + L EP+ GQIYI+ + D +
Sbjct: 19 VTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVF 78
Query: 151 IRWLREKIGFVGQEPQLL-QMDIKSNIMY-----GCPKDVKNEDIEWAAKQAYVHEFILS 204
+ + V Q L + NI + PK ++ + A+ + E +
Sbjct: 79 VPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTELLNR 138
Query: 205 LPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALR 264
P LSGGQ+QR+A+ RAI+R P + L DE S LD++ + L L+
Sbjct: 139 KPRE---------LSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQ 189
Query: 265 NDCKTKRTVIVIAH 278
T I + H
Sbjct: 190 RQLGV--TTIYVTH 201
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 90/194 (46%), Gaps = 25/194 (12%)
Query: 95 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL 154
P+L + IE +++A+ G +G+GK++ + +++ EPS+G+I G
Sbjct: 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----------- 69
Query: 155 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD 214
+I F Q ++ IK NI+ + + + K + E I ++
Sbjct: 70 --RISFCSQFSWIMPGTIKENIIGVSYDEYRYRSV---IKACQLEEDISKFAEKDNIVLG 124
Query: 215 DD--LLSGGQKQRIAIARAILRDPAILLLDEATSALD--SESEHYVKGVLHALRNDCKTK 270
+ LSGGQ+ RI++ARA+ +D + LLD LD +E E + V + N
Sbjct: 125 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN----- 179
Query: 271 RTVIVIAHRLSTIK 284
+T I++ ++ +K
Sbjct: 180 KTRILVTSKMEHLK 193
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 89/194 (45%), Gaps = 24/194 (12%)
Query: 95 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL 154
P+L + IE +++A+ G +G+GK++ + +++ EPS+G+I G
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----------- 99
Query: 155 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD 214
+I F Q ++ IK NI++G D K + E I ++
Sbjct: 100 --RISFCSQFSWIMPGTIKENIIFGVSYDEYR--YRSVIKACQLEEDISKFAEKDNIVLG 155
Query: 215 DD--LLSGGQKQRIAIARAILRDPAILLLDEATSALD--SESEHYVKGVLHALRNDCKTK 270
+ LS GQ+ +I++ARA+ +D + LLD LD +E E + V + N
Sbjct: 156 EGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN----- 210
Query: 271 RTVIVIAHRLSTIK 284
+T I++ ++ +K
Sbjct: 211 KTRILVTSKMEHLK 224
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 101/210 (48%), Gaps = 40/210 (19%)
Query: 98 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 157
L+ V +++ +V I+G +GSGKST +N++ + +G++Y + +T+ + L
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH- 81
Query: 158 IGFVG--QEPQ-LLQMDIKSNIMYG-----------------CPKDVKNEDIEWAAKQAY 197
G V Q PQ L +M + N++ G PK+ E +E A K
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKE--EEMVEKAFK--- 136
Query: 198 VHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 257
+ EF L L Y+ + LSGGQ + + I RA++ +P ++++D+ + +
Sbjct: 137 ILEF-LKLSHLYDRKAGE--LSGGQMKLVEIGRALMTNPKMIVMDQPIAGV-------AP 186
Query: 258 GVLHALRN---DCKTKR-TVIVIAHRLSTI 283
G+ H + N + K K T ++I HRL +
Sbjct: 187 GLAHDIFNHVLELKAKGITFLIIEHRLDIV 216
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 101/210 (48%), Gaps = 40/210 (19%)
Query: 98 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 157
L+ V +++ +V I+G +GSGKST +N++ + +G++Y + +T+ + L
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH- 81
Query: 158 IGFVG--QEPQ-LLQMDIKSNIMYG-----------------CPKDVKNEDIEWAAKQAY 197
G V Q PQ L +M + N++ G PK+ E +E A K
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKE--EEMVEKAFK--- 136
Query: 198 VHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 257
+ EF L L Y+ + LSGGQ + + I RA++ +P ++++DE + +
Sbjct: 137 ILEF-LKLSHLYDRKAGE--LSGGQMKLVEIGRALMTNPKMIVMDEPIAGV-------AP 186
Query: 258 GVLHALRN---DCKTKR-TVIVIAHRLSTI 283
G+ H + N + K K T ++I HRL +
Sbjct: 187 GLAHDIFNHVLELKAKGITFLIIEHRLDIV 216
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 90/184 (48%), Gaps = 32/184 (17%)
Query: 97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR--WL 154
+LN L ++ I G +G GKST + + ++GQ+ DGFP T + R ++
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAI------ANGQV--DGFP-TQEECRTVYV 500
Query: 155 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD 214
I + +L +S + G + +K++ IE+ + E I ++P
Sbjct: 501 EHDIDGTHSDTSVLDFVFESGV--GTKEAIKDKLIEFG----FTDEMI-AMPIS------ 547
Query: 215 DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 274
LSGG K ++A+ARA+LR+ ILLLDE T+ LD+ + ++ L N C T I
Sbjct: 548 --ALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYL----NTCGI--TSI 599
Query: 275 VIAH 278
I+H
Sbjct: 600 TISH 603
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 7/82 (8%)
Query: 61 LPSNQFLSEGVKLQRLMGHVQFVNISFHYP--SRPTVPILNHVCLTIEANEVVAIVGLSG 118
P +L EGVK ++ V+ N+ F YP S+P + +N C + +A++G +G
Sbjct: 655 FPEPGYL-EGVKTKQ-KAIVKVTNMEFQYPGTSKPQITDINFQC---SLSSRIAVIGPNG 709
Query: 119 SGKSTFVNLLLRLYEPSDGQIY 140
+GKST +N+L P+ G++Y
Sbjct: 710 AGKSTLINVLTGELLPTSGEVY 731
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 218 LSGGQKQRIAIARAILRDPAILLLDEATSALDSES 252
LSGGQK ++ +A + P +++LDE T+ LD +S
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS 936
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 91/196 (46%), Gaps = 29/196 (14%)
Query: 95 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL 154
P+L + IE +++A+ G +G+GK++ + +++ EPS+G+I G
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----------- 99
Query: 155 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAA--KQAYVHEFILSLPCGYETL 212
+I F Q ++ IK NI+ V ++ + + K + E I +
Sbjct: 100 --RISFCSQFSWIMPGTIKENII-----GVSYDEYRYRSVIKACQLEEDISKFAEKDNIV 152
Query: 213 VDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALD--SESEHYVKGVLHALRNDCK 268
+ + LS GQ+ +I++ARA+ +D + LLD LD +E E + V + N
Sbjct: 153 LGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN--- 209
Query: 269 TKRTVIVIAHRLSTIK 284
+T I++ ++ +K
Sbjct: 210 --KTRILVTSKMEHLK 223
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 93/191 (48%), Gaps = 29/191 (15%)
Query: 96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 155
P+L + +TIE VV G +G GK+T + + +P G+I +G P+T ++
Sbjct: 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVK 77
Query: 156 EKIGFVGQE---PQLLQMD--IKS-NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGY 209
KI F+ +E P+ + ++ +K+ +YG V +I A + V + L
Sbjct: 78 GKIFFLPEEIIVPRKISVEDYLKAVASLYGVK--VNKNEIMDALESVEVLDLKKKLGE-- 133
Query: 210 ETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV-KGVLHALRNDCK 268
LS G +R+ +A +L + I +LD+ A+D +S+H V K +L L+
Sbjct: 134 --------LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILK---- 181
Query: 269 TKRTVIVIAHR 279
++ +++I+ R
Sbjct: 182 -EKGIVIISSR 191
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 77/156 (49%), Gaps = 26/156 (16%)
Query: 97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR--WL 154
+LN L ++ I G +G GKST + ++GQ+ DGFP T + R ++
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLXRAI------ANGQV--DGFP-TQEECRTVYV 500
Query: 155 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD 214
I + +L +S + G + +K++ IE+ + E I + P
Sbjct: 501 EHDIDGTHSDTSVLDFVFESGV--GTKEAIKDKLIEFG----FTDEXI-AXPIS------ 547
Query: 215 DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 250
LSGG K ++A+ARA+LR+ ILLLDE T+ LD+
Sbjct: 548 --ALSGGWKXKLALARAVLRNADILLLDEPTNHLDT 581
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 61 LPSNQFLSEGVKLQRLMGHVQFVNISFHYP--SRPTVPILNHVCLTIEANEVVAIVGLSG 118
P +L EGVK ++ V+ N F YP S+P + +N C + +A++G +G
Sbjct: 655 FPEPGYL-EGVKTKQ-KAIVKVTNXEFQYPGTSKPQITDINFQC---SLSSRIAVIGPNG 709
Query: 119 SGKSTFVNLLLRLYEPSDGQIY 140
+GKST +N+L P+ G++Y
Sbjct: 710 AGKSTLINVLTGELLPTSGEVY 731
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 218 LSGGQKQRIAIARAILRDPAILLLDEATSALDSES 252
LSGGQK ++ +A + P +++LDE T+ LD +S
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS 936
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 77/156 (49%), Gaps = 26/156 (16%)
Query: 97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR--WL 154
+LN L ++ I G +G GKST + ++GQ+ DGFP T + R ++
Sbjct: 444 LLNKTQLRLKRARRYGICGPNGCGKSTLXRAI------ANGQV--DGFP-TQEECRTVYV 494
Query: 155 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD 214
I + +L +S + G + +K++ IE+ + E I + P
Sbjct: 495 EHDIDGTHSDTSVLDFVFESGV--GTKEAIKDKLIEFG----FTDEXI-AXPIS------ 541
Query: 215 DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 250
LSGG K ++A+ARA+LR+ ILLLDE T+ LD+
Sbjct: 542 --ALSGGWKXKLALARAVLRNADILLLDEPTNHLDT 575
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 61 LPSNQFLSEGVKLQRLMGHVQFVNISFHYP--SRPTVPILNHVCLTIEANEVVAIVGLSG 118
P +L EGVK ++ V+ N F YP S+P + +N C + +A++G +G
Sbjct: 649 FPEPGYL-EGVKTKQ-KAIVKVTNXEFQYPGTSKPQITDINFQC---SLSSRIAVIGPNG 703
Query: 119 SGKSTFVNLLLRLYEPSDGQIY 140
+GKST +N+L P+ G++Y
Sbjct: 704 AGKSTLINVLTGELLPTSGEVY 725
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 218 LSGGQKQRIAIARAILRDPAILLLDEATSALDSES 252
LSGGQK ++ +A + P +++LDE T+ LD +S
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS 930
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 88/190 (46%), Gaps = 19/190 (10%)
Query: 97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD------ 150
IL + IE E+ ++G +G+GK+T + ++ L +PS G + + G + +
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKL 89
Query: 151 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYE 210
I +L E+ G + + + +++ E +E A + A + E I Y
Sbjct: 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIE-EMVERATEIAGLGEKIKDRVSTY- 147
Query: 211 TLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTK 270
S G +++ IARA++ +P + +LDE TS LD + V+ + L+ +
Sbjct: 148 --------SKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKI---LKQASQEG 196
Query: 271 RTVIVIAHRL 280
T++V +H +
Sbjct: 197 LTILVSSHNM 206
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 80/172 (46%), Gaps = 33/172 (19%)
Query: 97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYIDGFPLTDL--DIRW 153
IL + I + + GL+G+GK+T +N+L YEP + G + + G +
Sbjct: 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNIL-NAYEPATSGTVNLFGKXPGKVGYSAET 94
Query: 154 LREKIGFVG-------QEPQ-----LLQMDIKSNIMYGCPKD-VKNED---IEWAAKQAY 197
+R+ IGFV QE + ++ KS +Y D ++NE ++ A
Sbjct: 95 VRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGXSAK 154
Query: 198 VHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD 249
++I GY LS G+KQR+ IARA+ P +L+LDE + LD
Sbjct: 155 AQQYI-----GY--------LSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 85/198 (42%), Gaps = 29/198 (14%)
Query: 86 SFHYPSRPTVP---ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 142
+F YPS +LN +E++ ++G +G+GK+T + LL +P +GQ
Sbjct: 353 AFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQ---- 408
Query: 143 GFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFI 202
P ++ ++ + F G QL I+ + N + +
Sbjct: 409 DIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFL--------NPQFQTDVVK------- 453
Query: 203 LSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL 260
P + ++D ++ LSGG+ QR+AI A+ I L+DE ++ LDSE V+
Sbjct: 454 ---PLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVI 510
Query: 261 HALRNDCKTKRTVIVIAH 278
R K+T ++ H
Sbjct: 511 R--RFILHNKKTAFIVEH 526
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 91/205 (44%), Gaps = 36/205 (17%)
Query: 100 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 159
H T +V+ +VG +G GKST + +L +P+ G+ D P I++ R
Sbjct: 95 HRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF--DDPPEWQEIIKYFR---- 148
Query: 160 FVGQEPQ-----LLQMDIKSNI----MYGCPKDVKNE----------DIEWAAKQAYVHE 200
G E Q +L+ DIK+ I + P+ +K +E + + +
Sbjct: 149 --GSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYI 206
Query: 201 FILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG 258
IL L E ++ D+ LSGG+ QR AI + +++ + + DE +S LD +
Sbjct: 207 KILQL----ENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQ 262
Query: 259 VLHALRNDCKTKRTVIVIAHRLSTI 283
++ +L K VI + H LS +
Sbjct: 263 IIRSLLAPTK---YVICVEHDLSVL 284
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 18/159 (11%)
Query: 98 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-RE 156
+ + L + ++V ++G +G+GK+T ++ + L G+I +G +T+ + R
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRX 81
Query: 157 KIGFVGQEPQLL-QMDIKSNIMYGC----PKDVKNEDIEWAAKQAYVHEFILSL-PCGYE 210
I V + ++ ++ + N+ G K+ D+EW I SL P E
Sbjct: 82 GIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRDLEW----------IFSLFPRLKE 131
Query: 211 TLVD-DDLLSGGQKQRIAIARAILRDPAILLLDEATSAL 248
L LSGG++Q +AI RA+ P +L DE + L
Sbjct: 132 RLKQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGL 170
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 85/194 (43%), Gaps = 18/194 (9%)
Query: 97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL--RLYEPSDGQIYIDGFPLTDLDIR-W 153
IL + L + EV AI+G +GSGKST L YE + G + G L L
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR 94
Query: 154 LREKIGFVGQEPQ---------LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILS 204
E I Q P LQ + + Y + + D + ++ +L
Sbjct: 95 AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIA---LLK 151
Query: 205 LPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALR 264
+P T + SGG+K+R I + + +P + +LDE+ S LD ++ V +++LR
Sbjct: 152 MPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLR 211
Query: 265 NDCKTKRTVIVIAH 278
+ KR+ I++ H
Sbjct: 212 D---GKRSFIIVTH 222
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 85/194 (43%), Gaps = 18/194 (9%)
Query: 97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL--RLYEPSDGQIYIDGFPLTDLDIR-W 153
IL + L + EV AI+G +GSGKST L YE + G + G L L
Sbjct: 16 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR 75
Query: 154 LREKIGFVGQEPQ---------LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILS 204
E I Q P LQ + + Y + + D + ++ +L
Sbjct: 76 AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIA---LLK 132
Query: 205 LPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALR 264
+P T + SGG+K+R I + + +P + +LDE+ S LD ++ V +++LR
Sbjct: 133 MPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLR 192
Query: 265 NDCKTKRTVIVIAH 278
+ KR+ I++ H
Sbjct: 193 D---GKRSFIIVTH 203
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 14/156 (8%)
Query: 103 LTIEAN-EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 161
+ +E N E V I+G +GSGK+T + + L P G I+I+G +++R +R I +
Sbjct: 24 INLEVNGEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFING-----MEVRKIRNYIRYS 77
Query: 162 GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL-LSG 220
P+ ++ + N + +++K D + E + +L G E L LS
Sbjct: 78 TNLPEAYEIGVTVNDIVYLYEELKGLD------RDLFLEMLKALKLGEEILRRKLYKLSA 131
Query: 221 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 256
GQ + + A+ P I+ LDE +D+ H +
Sbjct: 132 GQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVI 167
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 85/182 (46%), Gaps = 38/182 (20%)
Query: 109 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL 168
E++ I+G +G GK+TF +L+ G+I D G V E Q+L
Sbjct: 295 EIIGILGPNGIGKTTFARILV-------GEITADE---------------GSVTPEKQIL 332
Query: 169 QMDIKSNIMYGCPKDVKNEDIEWAAKQA------YVHEFI--LSLPCGYETLVDDDLLSG 220
K ++ + +E A+K A + E L+L E+ V+D LSG
Sbjct: 333 SY--KPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVND--LSG 388
Query: 221 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTV-IVIAHR 279
G+ Q++ IA + ++ + +LD+ +S LD E E Y+ V A++ + ++ V +I H
Sbjct: 389 GELQKLYIAATLAKEADLYVLDQPSSYLDVE-ERYI--VAKAIKRVTRERKAVTFIIDHD 445
Query: 280 LS 281
LS
Sbjct: 446 LS 447
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Query: 214 DDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD-SESEHYVKGVLHALRNDCKTKRT 272
D ++LSGG QR+ +A ++LR+ + + D+ +S LD E + K + L+N +
Sbjct: 135 DANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKN-----KY 189
Query: 273 VIVIAHRL 280
VIV+ H L
Sbjct: 190 VIVVDHDL 197
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 82/191 (42%), Gaps = 39/191 (20%)
Query: 97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR--LYEPSDGQIYIDGFPLTDL--DIR 152
IL V L + EV A++G +G+GKST +L Y G+I +DG + +L D R
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDER 77
Query: 153 WLREKIGFVGQEP---------QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFIL 203
R+ + Q P L++ +++ + ++ V EF
Sbjct: 78 -ARKGLFLAFQYPVEVPGVTIANFLRLALQAKL----------------GREVGVAEFWT 120
Query: 204 SLPCGYETLVDDDL---------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 254
+ E L D+ SGG+K+R I + ++ +P +LDE S LD ++
Sbjct: 121 KVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALK 180
Query: 255 YVKGVLHALRN 265
V ++A+R
Sbjct: 181 VVARGVNAMRG 191
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 218 LSGGQKQRIAIARAIL-RDPA--ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 274
LSGG+ QRI +A + RD + +LDE T L E + VLH L TVI
Sbjct: 806 LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRL---VDRGNTVI 862
Query: 275 VIAHRLSTIK 284
VI H L IK
Sbjct: 863 VIEHNLDVIK 872
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 200 EFILSLPCGYETLVDD-DLLSGGQKQRIAIARAILRD--PAILLLDEATSALDSESEHYV 256
EF++ + Y TL LSGG+ QRI +A I I +LDE T L +
Sbjct: 446 EFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERL 505
Query: 257 KGVLHALRNDCKTKRTVIVIAHRLSTIK 284
L LR+ TVIV+ H I+
Sbjct: 506 IKTLKKLRD---LGNTVIVVEHDEEVIR 530
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 98 LNHVCLTIEANEVVAIVGLSGSGKSTF 124
L ++ + I N +V I G+SGSGKS+
Sbjct: 14 LKNITVRIPKNRLVVITGVSGSGKSSL 40
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 218 LSGGQKQRIAIARAILRDP---AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 274
LSGG+ QR+ +A + R + +LDE T+ L + + VLH L ++ TV+
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGD---TVL 902
Query: 275 VIAHRLSTIK 284
VI H L IK
Sbjct: 903 VIEHNLDVIK 912
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 98 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 129
L +V + I VA+ G+SGSGKST VN +L
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 218 LSGGQKQRIAIARAILRDP---AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 274
LSGG+ QR+ +A + R + +LDE T+ L + + VLH L ++ TV+
Sbjct: 544 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGD---TVL 600
Query: 275 VIAHRLSTIK 284
VI H L IK
Sbjct: 601 VIEHNLDVIK 610
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 98 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 129
L +V + I VA+ G+SGSGKST VN +L
Sbjct: 338 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 218 LSGGQKQRIAIARAILRDP---AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 274
LSGG+ QR+ +A + R + +LDE T+ L + + VLH L ++ TV+
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGD---TVL 902
Query: 275 VIAHRLSTIK 284
VI H L IK
Sbjct: 903 VIEHNLDVIK 912
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 98 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 129
L +V + I VA+ G+SGSGKST VN +L
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 84/196 (42%), Gaps = 43/196 (21%)
Query: 105 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ--IYIDGFPLTDLDIRWLREKIGFVG 162
+ A E++ +VG +G+GKST LL R + G+ I G PL L ++
Sbjct: 23 VRAGEILHLVGPNGAGKST---LLARXAGXTSGKGSIQFAGQPLEAWSATKLALHRAYLS 79
Query: 163 QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEF----ILSLPCGYETLVDDDL- 217
Q+ + P W + H+ +L+ G L DD L
Sbjct: 80 QQ---------QTPPFATPV--------WHYLTLHQHDKTRTELLNDVAGALAL-DDKLG 121
Query: 218 -----LSGGQKQRIAIARAILR-----DPA--ILLLDEATSALDSESEHYVKGVLHALRN 265
LSGG+ QR+ +A +L+ +PA +LLLDE ++LD + + +L AL
Sbjct: 122 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSAL-- 179
Query: 266 DCKTKRTVIVIAHRLS 281
C+ ++ +H L+
Sbjct: 180 -CQQGLAIVXSSHDLN 194
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 10/105 (9%)
Query: 187 EDIEWAAKQAYVHEFILSL---PCGYETLVDD-DLLSGGQKQRIAIARAILRDPA---IL 239
E E+ A VH ++ +L GY L LSGG+ QR+ +A + + +
Sbjct: 829 EAAEFFEPIAGVHRYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVY 888
Query: 240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK 284
+LDE T+ L + ++ +L+ + TVIVI H L IK
Sbjct: 889 ILDEPTTGLHFDD---IRKLLNVINGLVDKGNTVIVIEHNLDVIK 930
>pdb|1II2|A Chain A, Crystal Structure Of Phosphoenolpyruvate Carboxykinase
(Pepck) From Trypanosoma Cruzi
pdb|1II2|B Chain B, Crystal Structure Of Phosphoenolpyruvate Carboxykinase
(Pepck) From Trypanosoma Cruzi
Length = 524
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 5/34 (14%)
Query: 95 VPILNHVCLTIEAN-----EVVAIVGLSGSGKST 123
+P +NH+C+ AN +V GLSG+GK+T
Sbjct: 195 MPQMNHLCMHASANVGKQGDVTVFFGLSGTGKTT 228
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 74/176 (42%), Gaps = 36/176 (20%)
Query: 105 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQE 164
+ A E++ +VG +G+GKST + + + G I G PL L ++ Q+
Sbjct: 23 VRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSATKLALHRAYLSQQ 81
Query: 165 PQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEF----ILSLPCGYETLVDDDL--- 217
+ P W + H+ +L+ G L DD L
Sbjct: 82 ---------QTPPFATPV--------WHYLTLHQHDKTRTELLNDVAGALAL-DDKLGRS 123
Query: 218 ---LSGGQKQRIAIARAILR-----DPA--ILLLDEATSALDSESEHYVKGVLHAL 263
LSGG+ QR+ +A +L+ +PA +LLLD+ ++LD + + +L AL
Sbjct: 124 TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSAL 179
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 76/178 (42%), Gaps = 40/178 (22%)
Query: 105 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ--IYIDGFPLTDLDIRWLREKIGFVG 162
+ A E++ +VG +G+GKST LL R + G+ I G PL L ++
Sbjct: 23 VRAGEILHLVGPNGAGKST---LLARXAGXTSGKGSIQFAGQPLEAWSATKLALHRAYLS 79
Query: 163 QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEF----ILSLPCGYETLVDDDL- 217
Q+ + P W + H+ +L+ G L DD L
Sbjct: 80 QQ---------QTPPFATPV--------WHYLTLHQHDKTRTELLNDVAGALAL-DDKLG 121
Query: 218 -----LSGGQKQRIAIARAILR-----DPA--ILLLDEATSALDSESEHYVKGVLHAL 263
LSGG+ QR+ +A +L+ +PA +LLLDE ++LD + + +L AL
Sbjct: 122 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSAL 179
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 12/59 (20%)
Query: 111 VAIVGLSGSGKSTFVNLLLR------------LYEPSDGQIYIDGFPLTDLDIRWLREK 157
VAIVG GKST N +L +P D +++IDG +D LR K
Sbjct: 183 VAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRK 241
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 36/176 (20%)
Query: 105 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQE 164
+ A E++ +VG +G+GKST + + + G I G PL L ++ Q+
Sbjct: 23 VRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSATKLALHRAYLSQQ 81
Query: 165 PQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEF----ILSLPCGYETLVDDDL--- 217
+ P W + H+ +L+ G L DD L
Sbjct: 82 ---------QTPPFATPV--------WHYLTLHQHDKTRTELLNDVAGALAL-DDKLGRS 123
Query: 218 ---LSGGQKQRIAIARAILR-----DPA--ILLLDEATSALDSESEHYVKGVLHAL 263
LSGG+ QR+ +A +L+ +PA +LLLD+ +LD + + +L AL
Sbjct: 124 TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSAL 179
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 11/65 (16%)
Query: 111 VAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE-----KIGFVGQEP 165
+ +VGL SGK+TFVN++ + GQ D P ++R + + KI +G +P
Sbjct: 25 LTLVGLQYSGKTTFVNVI------ASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQP 78
Query: 166 QLLQM 170
+ M
Sbjct: 79 RFRSM 83
>pdb|2OHF|A Chain A, Crystal Structure Of Human Ola1 In Complex With Amppcp
Length = 396
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
Query: 111 VAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 150
+ IVGL GKSTF N+L ++ Q + FP +D
Sbjct: 25 IGIVGLPNVGKSTFFNVL------TNSQASAENFPFCTID 58
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 11/65 (16%)
Query: 111 VAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE-----KIGFVGQEP 165
+ +VGL SGK+TFVN++ + GQ D P ++R + + K+ +G +P
Sbjct: 25 LTLVGLQYSGKTTFVNVI------ASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQP 78
Query: 166 QLLQM 170
+ M
Sbjct: 79 RFRSM 83
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 218 LSGGQKQRIAIA---RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 274
LSGG+ QRI +A R R + +LDE T+ L ++ L L TVI
Sbjct: 731 LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKL---VDAGNTVI 787
Query: 275 VIAHRLSTIKA 285
+ H++ + A
Sbjct: 788 AVEHKMQVVAA 798
>pdb|3H2Y|A Chain A, Crystal Structure Of Yqeh Gtpase From Bacillus Anthracis
With Dgdp Bound
Length = 368
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 111 VAIVGLSGSGKSTFVNLLLRLY-EPSDGQIYIDGFPLTDLDI 151
V +VG + GKSTF+N ++ + + ++ I FP T LD+
Sbjct: 163 VYVVGCTNVGKSTFINRXIKEFSDETENVITTSHFPGTTLDL 204
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 11/65 (16%)
Query: 111 VAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE-----KIGFVGQEP 165
+ +VGL SGK+TFVN++ + GQ D P ++R + + K+ +G +P
Sbjct: 34 LTLVGLQYSGKTTFVNVI------ASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQP 87
Query: 166 QLLQM 170
+ M
Sbjct: 88 RFRSM 92
>pdb|2OBK|A Chain A, X-Ray Structure Of The Putative Se Binding Protein From
Pseudomonas Fluorescens. Northeast Structural Genomics
Consortium Target Plr6.
pdb|2OBK|B Chain B, X-Ray Structure Of The Putative Se Binding Protein From
Pseudomonas Fluorescens. Northeast Structural Genomics
Consortium Target Plr6.
pdb|2OBK|C Chain C, X-Ray Structure Of The Putative Se Binding Protein From
Pseudomonas Fluorescens. Northeast Structural Genomics
Consortium Target Plr6.
pdb|2OBK|D Chain D, X-Ray Structure Of The Putative Se Binding Protein From
Pseudomonas Fluorescens. Northeast Structural Genomics
Consortium Target Plr6.
pdb|2OBK|E Chain E, X-Ray Structure Of The Putative Se Binding Protein From
Pseudomonas Fluorescens. Northeast Structural Genomics
Consortium Target Plr6.
pdb|2OBK|F Chain F, X-Ray Structure Of The Putative Se Binding Protein From
Pseudomonas Fluorescens. Northeast Structural Genomics
Consortium Target Plr6.
pdb|2OBK|G Chain G, X-Ray Structure Of The Putative Se Binding Protein From
Pseudomonas Fluorescens. Northeast Structural Genomics
Consortium Target Plr6.
pdb|2OBK|H Chain H, X-Ray Structure Of The Putative Se Binding Protein From
Pseudomonas Fluorescens. Northeast Structural Genomics
Consortium Target Plr6
Length = 103
Score = 29.3 bits (64), Expect = 3.2, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 17 PEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIG 49
PE + Y C+WL+ A W + LS+ +G
Sbjct: 6 PEVIITYCTQCQWLLRAAWLAQELLSTFSDDLG 38
>pdb|2OKA|A Chain A, Crystal Structure Of Q9hyq7_pseae From Pseudomonas
Aeruginosa. Northeast Structural Genomics Consortium
Target Par82
pdb|2OKA|B Chain B, Crystal Structure Of Q9hyq7_pseae From Pseudomonas
Aeruginosa. Northeast Structural Genomics Consortium
Target Par82
pdb|2OKA|C Chain C, Crystal Structure Of Q9hyq7_pseae From Pseudomonas
Aeruginosa. Northeast Structural Genomics Consortium
Target Par82
pdb|2OKA|D Chain D, Crystal Structure Of Q9hyq7_pseae From Pseudomonas
Aeruginosa. Northeast Structural Genomics Consortium
Target Par82
Length = 104
Score = 29.3 bits (64), Expect = 3.3, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 17 PEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIG 49
PE + Y C+WL+ A W + LS+ +G
Sbjct: 6 PEIVITYCTQCQWLLRAAWLAQELLSTFADDLG 38
>pdb|1TPZ|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TPZ|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQ2|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQ2|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 422
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 111 VAIVGLSGSGKSTFVNLL 128
VA+ G +GSGKS+F+N L
Sbjct: 72 VAVTGETGSGKSSFINTL 89
>pdb|1TQ6|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 111 VAIVGLSGSGKSTFVNLL 128
VA+ G +GSGKS+F+N L
Sbjct: 72 VAVTGETGSGKSSFINTL 89
>pdb|1TQD|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQD|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 111 VAIVGLSGSGKSTFVNLL 128
VA+ G +GSGKS+F+N L
Sbjct: 72 VAVTGETGSGKSSFINTL 89
>pdb|1TQ4|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 111 VAIVGLSGSGKSTFVNLL 128
VA+ G +GSGKS+F+N L
Sbjct: 72 VAVTGETGSGKSSFINTL 89
>pdb|2YVU|A Chain A, Crystal Structure Of Ape1195
pdb|2YVU|B Chain B, Crystal Structure Of Ape1195
Length = 186
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 11/64 (17%)
Query: 105 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR----EKIGF 160
IE VV + GL GSGK+T L L + +G+ + LD W R E GF
Sbjct: 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQK-------EGYRVEVLDGDWARTTVSEGAGF 62
Query: 161 VGQE 164
+E
Sbjct: 63 TREE 66
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
Query: 218 LSGGQKQRIAIARAI-LRDPA-----ILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 271
LSGG++ I+I+ A+ L + A +DE S+LD+E++ + VL L + +
Sbjct: 280 LSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELE---RLNK 336
Query: 272 TVIVIAH 278
++ I H
Sbjct: 337 VIVFITH 343
>pdb|3EC1|A Chain A, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
pdb|3EC1|B Chain B, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
Length = 369
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 111 VAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI 151
V +VG + GKSTF+N ++ I FP T LD+
Sbjct: 165 VYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDM 205
>pdb|4GP6|A Chain A, Polynucleotide Kinase
pdb|4GP6|B Chain B, Polynucleotide Kinase
Length = 171
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 103 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 136
LTI +V ++G SGSGKSTF + ++P++
Sbjct: 4 LTIPELSLVVLIGSSGSGKSTFAK---KHFKPTE 34
>pdb|2XWN|A Chain A, Crystal Structure Of Ispd From Mycobacterium Tuberculosis
In Complex With Ctp And Mg
pdb|2XWN|B Chain B, Crystal Structure Of Ispd From Mycobacterium Tuberculosis
In Complex With Ctp And Mg
Length = 233
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 106 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 142
EA EVVAIV +GSG+ V + Y+ DGQ I+
Sbjct: 4 EAGEVVAIVPAAGSGERLAVGVPKAFYQ-LDGQTLIE 39
>pdb|4GP7|A Chain A, Polynucleotide Kinase
pdb|4GP7|B Chain B, Polynucleotide Kinase
Length = 171
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 103 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 136
LTI +V ++G SGSGKSTF + ++P++
Sbjct: 4 LTIPELSLVVLIGSSGSGKSTFAK---KHFKPTE 34
>pdb|3OKR|A Chain A, Structure Of Mtb Apo 2-C-Methyl-D-Erythritol 4-Phosphate
Cytidyltransferase (Ispd)
pdb|3OKR|B Chain B, Structure Of Mtb Apo 2-C-Methyl-D-Erythritol 4-Phosphate
Cytidyltransferase (Ispd)
pdb|3OKR|C Chain C, Structure Of Mtb Apo 2-C-Methyl-D-Erythritol 4-Phosphate
Cytidyltransferase (Ispd)
pdb|3OKR|D Chain D, Structure Of Mtb Apo 2-C-Methyl-D-Erythritol 4-Phosphate
Cytidyltransferase (Ispd)
Length = 231
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 106 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 142
EA EVVAIV +GSG+ V + Y+ DGQ I+
Sbjct: 4 EAGEVVAIVPAAGSGERLAVGVPKAFYQ-LDGQTLIE 39
>pdb|3Q7U|A Chain A, Structure Of Mtb 2-C-Methyl-D-Erythritol 4-Phosphate
Cytidyltransferase (Ispd) Complexed With Ctp
pdb|3Q7U|B Chain B, Structure Of Mtb 2-C-Methyl-D-Erythritol 4-Phosphate
Cytidyltransferase (Ispd) Complexed With Ctp
pdb|3Q80|A Chain A, Structure Of Mtb 2-C-Methyl-D-Erythritol 4-Phosphate
Cytidyltransferase (Ispd) Complexed With Cdp-Me
pdb|3Q80|B Chain B, Structure Of Mtb 2-C-Methyl-D-Erythritol 4-Phosphate
Cytidyltransferase (Ispd) Complexed With Cdp-Me
Length = 231
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 106 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 142
EA EVVAIV +GSG+ V + Y+ DGQ I+
Sbjct: 4 EAGEVVAIVPAAGSGERLAVGVPKAFYQ-LDGQTLIE 39
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,834,405
Number of Sequences: 62578
Number of extensions: 344915
Number of successful extensions: 1386
Number of sequences better than 100.0: 124
Number of HSP's better than 100.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1102
Number of HSP's gapped (non-prelim): 169
length of query: 325
length of database: 14,973,337
effective HSP length: 99
effective length of query: 226
effective length of database: 8,778,115
effective search space: 1983853990
effective search space used: 1983853990
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)