Query 020527
Match_columns 325
No_of_seqs 330 out of 2552
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 03:06:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020527.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020527hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0058 Peptide exporter, ABC 100.0 7.5E-73 1.6E-77 557.7 31.8 314 2-322 389-706 (716)
2 COG2274 SunT ABC-type bacterio 100.0 8.8E-72 1.9E-76 566.4 34.1 313 2-320 394-708 (709)
3 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.5E-66 3.3E-71 535.2 38.2 308 2-320 376-685 (686)
4 COG1132 MdlB ABC-type multidru 100.0 7.1E-66 1.5E-70 519.7 36.5 312 2-322 253-566 (567)
5 TIGR01193 bacteriocin_ABC ABC- 100.0 5.3E-66 1.2E-70 532.8 35.8 310 2-318 396-707 (708)
6 PRK11176 lipid transporter ATP 100.0 1.5E-65 3.3E-70 518.8 37.0 312 3-321 267-580 (582)
7 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 9.3E-66 2E-70 531.2 35.5 308 2-317 394-709 (710)
8 PRK11174 cysteine/glutathione 100.0 2.1E-65 4.5E-70 518.4 37.1 308 6-323 268-587 (588)
9 KOG0055 Multidrug/pheromone ex 100.0 2E-65 4.4E-70 529.6 33.0 315 2-321 909-1226(1228)
10 TIGR00958 3a01208 Conjugate Tr 100.0 4.1E-65 8.8E-70 525.7 35.1 306 3-316 403-710 (711)
11 TIGR03375 type_I_sec_LssB type 100.0 1.5E-64 3.3E-69 520.9 36.7 302 2-309 386-689 (694)
12 COG4988 CydD ABC-type transpor 100.0 1.9E-64 4.2E-69 489.5 33.3 308 7-322 246-557 (559)
13 TIGR01846 type_I_sec_HlyB type 100.0 8E-64 1.7E-68 515.5 38.2 313 2-321 379-693 (694)
14 PRK10790 putative multidrug tr 100.0 8.5E-64 1.8E-68 507.0 37.4 301 10-321 274-576 (592)
15 PRK13657 cyclic beta-1,2-gluca 100.0 2.1E-63 4.7E-68 503.7 38.1 311 3-320 258-570 (588)
16 TIGR02203 MsbA_lipidA lipid A 100.0 2.4E-63 5.2E-68 501.6 37.0 312 2-320 255-568 (571)
17 PTZ00265 multidrug resistance 100.0 1.2E-63 2.6E-68 543.2 36.4 316 2-320 1084-1465(1466)
18 PRK11160 cysteine/glutathione 100.0 3.3E-63 7.2E-68 500.7 36.7 308 3-319 263-573 (574)
19 KOG0055 Multidrug/pheromone ex 100.0 9.1E-65 2E-69 524.8 24.4 314 2-320 272-588 (1228)
20 PRK10789 putative multidrug tr 100.0 9.5E-63 2.1E-67 497.0 37.0 311 3-321 239-551 (569)
21 TIGR02204 MsbA_rel ABC transpo 100.0 1.4E-62 3E-67 496.6 36.9 313 3-320 260-575 (576)
22 COG1126 GlnQ ABC-type polar am 100.0 6.9E-64 1.5E-68 432.1 22.2 217 79-310 2-227 (240)
23 TIGR01192 chvA glucan exporter 100.0 4.6E-62 1E-66 493.2 37.8 312 2-320 257-570 (585)
24 KOG0057 Mitochondrial Fe/S clu 100.0 1.9E-62 4.1E-67 469.9 30.4 308 5-322 279-588 (591)
25 TIGR01842 type_I_sec_PrtD type 100.0 4.7E-61 1E-65 482.5 36.7 298 3-308 243-542 (544)
26 COG4987 CydC ABC-type transpor 100.0 8.2E-62 1.8E-66 465.1 28.0 300 12-319 270-572 (573)
27 KOG0056 Heavy metal exporter H 100.0 2.1E-62 4.7E-67 462.3 21.7 311 4-321 462-775 (790)
28 TIGR00957 MRP_assoc_pro multi 100.0 2.7E-60 5.8E-65 520.9 37.3 308 5-319 1206-1519(1522)
29 TIGR02868 CydC thiol reductant 100.0 2.4E-60 5.2E-65 475.8 31.4 270 3-280 256-529 (529)
30 COG1135 AbcC ABC-type metal io 100.0 5.4E-61 1.2E-65 433.5 20.8 221 79-310 1-233 (339)
31 COG4618 ArpD ABC-type protease 100.0 8.5E-60 1.8E-64 447.9 26.8 300 2-309 260-561 (580)
32 PLN03232 ABC transporter C fam 100.0 5.6E-59 1.2E-63 509.8 37.2 293 22-321 1174-1472(1495)
33 TIGR02857 CydD thiol reductant 100.0 4.7E-59 1E-63 466.6 33.0 281 4-292 247-529 (529)
34 PLN03130 ABC transporter C fam 100.0 1.2E-58 2.5E-63 508.2 38.2 295 16-320 1174-1474(1622)
35 PTZ00243 ABC transporter; Prov 100.0 4.9E-58 1.1E-62 502.5 37.8 302 12-320 1211-1546(1560)
36 COG1125 OpuBA ABC-type proline 100.0 1.1E-59 2.3E-64 414.2 19.6 217 79-309 1-226 (309)
37 COG1120 FepC ABC-type cobalami 100.0 2E-59 4.3E-64 421.5 20.9 224 79-317 2-236 (258)
38 PTZ00265 multidrug resistance 100.0 5.2E-58 1.1E-62 499.2 35.6 316 2-320 298-728 (1466)
39 COG5265 ATM1 ABC-type transpor 100.0 1.5E-58 3.2E-63 430.9 23.9 307 5-318 187-496 (497)
40 COG3839 MalK ABC-type sugar tr 100.0 1.2E-57 2.6E-62 424.5 23.2 217 77-309 1-224 (338)
41 TIGR01271 CFTR_protein cystic 100.0 5.3E-56 1.2E-60 485.8 37.4 299 14-320 1135-1452(1490)
42 COG3842 PotA ABC-type spermidi 100.0 1.4E-57 3E-62 426.1 20.7 216 79-310 5-228 (352)
43 COG1127 Ttg2A ABC-type transpo 100.0 3.7E-57 8E-62 395.9 22.0 227 79-319 8-247 (263)
44 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1.4E-56 2.9E-61 401.3 24.5 215 78-311 3-230 (254)
45 COG3638 ABC-type phosphate/pho 100.0 5.6E-57 1.2E-61 393.8 21.3 216 79-307 3-236 (258)
46 COG1117 PstB ABC-type phosphat 100.0 5.7E-57 1.2E-61 388.0 19.1 219 79-310 7-239 (253)
47 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.1E-55 2.3E-60 444.4 31.1 279 13-301 263-552 (555)
48 COG1136 SalX ABC-type antimicr 100.0 3.6E-56 7.9E-61 393.1 24.0 208 80-298 2-221 (226)
49 COG1116 TauB ABC-type nitrate/ 100.0 5.4E-56 1.2E-60 392.9 21.7 200 79-297 3-211 (248)
50 COG2884 FtsE Predicted ATPase 100.0 2.9E-56 6.2E-61 377.2 18.0 210 79-302 1-220 (223)
51 COG1118 CysA ABC-type sulfate/ 100.0 1.1E-55 2.3E-60 398.4 19.8 216 79-310 2-229 (345)
52 COG1124 DppF ABC-type dipeptid 100.0 7.3E-55 1.6E-59 382.8 24.3 228 79-317 3-241 (252)
53 PLN03232 ABC transporter C fam 100.0 3.9E-54 8.6E-59 471.7 35.9 298 3-320 540-840 (1495)
54 COG1122 CbiO ABC-type cobalt t 100.0 2.3E-55 5.1E-60 393.9 21.5 219 79-310 3-230 (235)
55 TIGR02314 ABC_MetN D-methionin 100.0 1.4E-54 3E-59 410.4 26.3 219 80-309 2-231 (343)
56 PLN03130 ABC transporter C fam 100.0 1.1E-53 2.4E-58 469.0 35.6 297 3-320 540-840 (1622)
57 cd03289 ABCC_CFTR2 The CFTR su 100.0 3.3E-53 7.2E-58 390.4 29.0 233 79-319 2-236 (275)
58 PRK11650 ugpC glycerol-3-phosp 100.0 8.3E-54 1.8E-58 407.7 25.6 218 78-310 2-226 (356)
59 cd03252 ABCC_Hemolysin The ABC 100.0 4.6E-53 1E-57 381.8 28.6 233 80-318 1-235 (237)
60 COG3840 ThiQ ABC-type thiamine 100.0 1.2E-53 2.7E-58 358.8 21.7 213 80-310 2-221 (231)
61 cd03261 ABC_Org_Solvent_Resist 100.0 1.7E-53 3.7E-58 384.2 24.2 220 80-313 1-231 (235)
62 PRK10522 multidrug transporter 100.0 1.2E-52 2.5E-57 421.9 32.6 275 16-305 261-536 (547)
63 PRK11432 fbpC ferric transport 100.0 1.4E-53 3.1E-58 405.1 24.5 217 77-309 4-227 (351)
64 KOG0054 Multidrug resistance-a 100.0 1.9E-52 4.1E-57 441.7 32.3 298 15-319 1071-1374(1381)
65 TIGR03265 PhnT2 putative 2-ami 100.0 4.5E-53 9.7E-58 402.2 24.8 217 78-310 3-226 (353)
66 PRK09536 btuD corrinoid ABC tr 100.0 1E-52 2.2E-57 404.6 26.7 217 79-310 3-230 (402)
67 PRK13650 cbiO cobalt transport 100.0 1.7E-52 3.7E-57 387.2 26.9 221 79-310 4-231 (279)
68 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 4.9E-52 1.1E-56 375.4 28.1 233 80-317 1-235 (238)
69 cd03251 ABCC_MsbA MsbA is an e 100.0 4.6E-52 1E-56 374.5 27.3 230 80-315 1-232 (234)
70 PRK09452 potA putrescine/sperm 100.0 2.9E-52 6.3E-57 398.9 27.0 216 79-310 14-236 (375)
71 PRK10851 sulfate/thiosulfate t 100.0 2.7E-52 5.9E-57 396.8 25.8 215 79-309 2-227 (353)
72 PRK11153 metN DL-methionine tr 100.0 4E-52 8.7E-57 394.9 26.7 219 80-309 2-231 (343)
73 PRK14250 phosphate ABC transpo 100.0 8.1E-52 1.8E-56 374.9 27.3 218 78-309 2-222 (241)
74 cd03253 ABCC_ATM1_transporter 100.0 1.2E-51 2.6E-56 372.2 28.3 233 80-319 1-235 (236)
75 PRK13537 nodulation ABC transp 100.0 2.5E-52 5.5E-57 390.6 24.6 215 79-309 7-228 (306)
76 COG4555 NatA ABC-type Na+ tran 100.0 7.2E-53 1.6E-57 359.4 18.4 215 79-308 1-222 (245)
77 PRK13637 cbiO cobalt transport 100.0 6.6E-52 1.4E-56 384.7 26.4 220 79-309 2-235 (287)
78 cd03254 ABCC_Glucan_exporter_l 100.0 1.5E-51 3.2E-56 370.0 27.4 224 79-309 2-227 (229)
79 cd03256 ABC_PhnC_transporter A 100.0 5.3E-52 1.2E-56 375.5 24.5 215 80-307 1-233 (241)
80 TIGR03258 PhnT 2-aminoethylpho 100.0 2.9E-52 6.4E-57 397.4 23.9 215 79-309 5-229 (362)
81 TIGR00960 3a0501s02 Type II (G 100.0 3.1E-52 6.8E-57 371.3 22.4 205 80-297 2-216 (216)
82 PRK13643 cbiO cobalt transport 100.0 8.4E-52 1.8E-56 384.2 26.0 218 80-309 2-234 (288)
83 PRK11000 maltose/maltodextrin 100.0 6.2E-52 1.4E-56 396.9 25.5 216 78-309 2-224 (369)
84 PRK13647 cbiO cobalt transport 100.0 9.2E-52 2E-56 381.4 25.6 214 79-306 4-225 (274)
85 PRK13634 cbiO cobalt transport 100.0 8E-52 1.7E-56 384.7 25.4 221 79-310 2-237 (290)
86 cd03296 ABC_CysA_sulfate_impor 100.0 1.1E-51 2.4E-56 373.4 25.6 215 79-309 2-227 (239)
87 PRK13631 cbiO cobalt transport 100.0 1.2E-51 2.6E-56 387.9 26.7 224 79-310 21-267 (320)
88 COG1131 CcmA ABC-type multidru 100.0 6.6E-52 1.4E-56 385.0 24.5 216 79-308 4-226 (293)
89 TIGR02315 ABC_phnC phosphonate 100.0 9.7E-52 2.1E-56 374.4 24.8 215 80-307 2-234 (243)
90 cd03260 ABC_PstB_phosphate_tra 100.0 6.2E-52 1.3E-56 372.1 23.2 212 80-305 1-226 (227)
91 PRK11607 potG putrescine trans 100.0 8.7E-52 1.9E-56 396.2 25.4 217 78-310 18-241 (377)
92 PRK13646 cbiO cobalt transport 100.0 1.1E-51 2.5E-56 383.0 25.4 224 80-310 3-237 (286)
93 cd03265 ABC_DrrA DrrA is the A 100.0 1.1E-51 2.3E-56 369.0 24.0 212 80-306 1-219 (220)
94 cd03219 ABC_Mj1267_LivG_branch 100.0 9E-52 1.9E-56 373.0 23.6 224 80-309 1-233 (236)
95 cd03288 ABCC_SUR2 The SUR doma 100.0 8.8E-51 1.9E-55 371.5 30.0 238 76-320 16-256 (257)
96 PRK13635 cbiO cobalt transport 100.0 2.6E-51 5.6E-56 379.3 26.7 219 79-309 5-230 (279)
97 TIGR01186 proV glycine betaine 100.0 5.3E-52 1.1E-56 395.0 22.5 208 88-309 2-220 (363)
98 PRK13652 cbiO cobalt transport 100.0 3.6E-51 7.8E-56 378.0 27.0 219 78-309 2-228 (277)
99 cd03259 ABC_Carb_Solutes_like 100.0 8.1E-52 1.8E-56 367.9 21.7 206 80-301 1-213 (213)
100 PRK13651 cobalt transporter AT 100.0 2.1E-51 4.5E-56 384.0 25.5 220 79-310 2-256 (305)
101 PRK13536 nodulation factor exp 100.0 1.7E-51 3.6E-56 389.6 24.9 214 79-308 41-261 (340)
102 cd03258 ABC_MetN_methionine_tr 100.0 2.4E-51 5.1E-56 369.7 24.7 218 80-308 2-230 (233)
103 PRK15079 oligopeptide ABC tran 100.0 3.3E-51 7.1E-56 386.5 26.5 226 79-315 8-259 (331)
104 PRK13636 cbiO cobalt transport 100.0 3.8E-51 8.3E-56 378.9 26.1 218 79-309 5-232 (283)
105 cd03224 ABC_TM1139_LivF_branch 100.0 3.4E-51 7.3E-56 365.9 24.8 214 80-308 1-221 (222)
106 cd03244 ABCC_MRP_domain2 Domai 100.0 8.3E-51 1.8E-55 363.3 27.3 217 79-302 2-220 (221)
107 COG0410 LivF ABC-type branched 100.0 7.7E-51 1.7E-55 355.0 26.1 226 79-314 3-232 (237)
108 COG1137 YhbG ABC-type (unclass 100.0 4.4E-53 9.6E-58 360.4 11.7 228 77-312 2-232 (243)
109 PRK11629 lolD lipoprotein tran 100.0 4.3E-51 9.2E-56 368.3 25.0 213 79-302 5-228 (233)
110 cd03245 ABCC_bacteriocin_expor 100.0 1.2E-50 2.6E-55 362.0 27.2 217 79-301 2-220 (220)
111 TIGR00957 MRP_assoc_pro multi 100.0 3.7E-50 8E-55 441.0 36.7 297 5-318 559-860 (1522)
112 TIGR01288 nodI ATP-binding ABC 100.0 4E-51 8.6E-56 382.3 24.9 214 79-308 4-224 (303)
113 PRK13641 cbiO cobalt transport 100.0 6.2E-51 1.3E-55 378.2 25.9 219 79-309 2-235 (287)
114 cd03218 ABC_YhbG The ABC trans 100.0 5.6E-51 1.2E-55 366.9 24.8 214 80-308 1-222 (232)
115 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 6.9E-51 1.5E-55 367.6 25.2 215 80-309 2-222 (236)
116 cd03226 ABC_cobalt_CbiO_domain 100.0 2.6E-51 5.7E-56 362.6 22.0 201 81-298 1-205 (205)
117 cd03263 ABC_subfamily_A The AB 100.0 4.5E-51 9.7E-56 364.7 23.7 212 80-306 1-219 (220)
118 cd03268 ABC_BcrA_bacitracin_re 100.0 3.2E-51 7E-56 362.7 22.6 205 80-301 1-208 (208)
119 PRK11614 livF leucine/isoleuci 100.0 9.9E-51 2.1E-55 366.7 26.1 216 79-309 5-227 (237)
120 cd03295 ABC_OpuCA_Osmoprotecti 100.0 4.4E-51 9.6E-56 370.2 23.7 221 80-309 1-226 (242)
121 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 2.3E-51 5.1E-56 366.1 21.3 207 80-297 1-218 (218)
122 PRK11831 putative ABC transpor 100.0 8.8E-51 1.9E-55 373.9 25.7 226 79-318 7-244 (269)
123 PRK13644 cbiO cobalt transport 100.0 1.2E-50 2.5E-55 374.0 26.4 216 80-309 2-225 (274)
124 PRK11264 putative amino-acid A 100.0 1.1E-50 2.4E-55 369.1 25.7 220 79-309 3-234 (250)
125 PRK14257 phosphate ABC transpo 100.0 1.1E-50 2.3E-55 382.6 26.4 223 78-310 79-315 (329)
126 PRK13632 cbiO cobalt transport 100.0 1.3E-50 2.8E-55 373.1 26.3 220 79-310 7-233 (271)
127 PRK13642 cbiO cobalt transport 100.0 1.5E-50 3.2E-55 373.9 26.7 221 79-310 4-231 (277)
128 cd03266 ABC_NatA_sodium_export 100.0 7.8E-51 1.7E-55 362.7 23.9 209 80-301 2-218 (218)
129 PRK10575 iron-hydroxamate tran 100.0 1.2E-50 2.6E-55 372.2 25.8 216 79-308 11-237 (265)
130 PRK09493 glnQ glutamine ABC tr 100.0 9.1E-51 2E-55 367.6 24.4 215 80-309 2-226 (240)
131 PRK11022 dppD dipeptide transp 100.0 1.5E-50 3.1E-55 381.6 26.5 228 77-315 1-251 (326)
132 PRK13638 cbiO cobalt transport 100.0 1.4E-50 3E-55 373.0 25.7 216 80-310 2-227 (271)
133 TIGR02211 LolD_lipo_ex lipopro 100.0 8.9E-51 1.9E-55 363.1 23.7 208 80-298 2-220 (221)
134 cd03301 ABC_MalK_N The N-termi 100.0 6.4E-51 1.4E-55 362.0 22.6 206 80-301 1-213 (213)
135 TIGR00972 3a0107s01c2 phosphat 100.0 1.1E-50 2.3E-55 368.8 24.5 214 80-309 2-233 (247)
136 COG0411 LivG ABC-type branched 100.0 1.7E-51 3.7E-56 361.8 18.3 229 79-314 4-245 (250)
137 PRK13548 hmuV hemin importer A 100.0 2.7E-50 5.9E-55 368.5 27.1 217 79-309 2-231 (258)
138 PRK13633 cobalt transporter AT 100.0 1.5E-50 3.3E-55 374.3 25.6 221 79-310 4-235 (280)
139 PRK10895 lipopolysaccharide AB 100.0 2.3E-50 4.9E-55 365.2 26.0 217 78-309 2-227 (241)
140 PRK11231 fecE iron-dicitrate t 100.0 1.8E-50 4E-55 368.9 25.4 224 79-318 2-236 (255)
141 PRK11308 dppF dipeptide transp 100.0 3E-50 6.5E-55 379.5 27.6 227 79-316 5-253 (327)
142 PRK10253 iron-enterobactin tra 100.0 2.6E-50 5.7E-55 370.0 26.3 217 79-309 7-234 (265)
143 PRK11300 livG leucine/isoleuci 100.0 2.8E-50 6.1E-55 367.4 26.3 217 79-309 5-244 (255)
144 PRK13640 cbiO cobalt transport 100.0 2.6E-50 5.6E-55 373.2 26.2 219 79-309 5-233 (282)
145 cd03294 ABC_Pro_Gly_Bertaine T 100.0 8.1E-51 1.8E-55 374.1 22.7 215 81-309 26-251 (269)
146 PRK10070 glycine betaine trans 100.0 2.4E-50 5.2E-55 387.9 27.0 202 97-309 43-255 (400)
147 cd03293 ABC_NrtD_SsuB_transpor 100.0 9.7E-51 2.1E-55 362.8 22.5 208 80-303 1-218 (220)
148 COG4175 ProV ABC-type proline/ 100.0 3.3E-51 7.3E-56 369.9 19.5 221 79-310 4-256 (386)
149 PRK14247 phosphate ABC transpo 100.0 2E-50 4.3E-55 367.5 24.4 220 78-309 2-235 (250)
150 TIGR02673 FtsE cell division A 100.0 1.1E-50 2.4E-55 360.7 22.2 203 80-296 2-214 (214)
151 PRK14273 phosphate ABC transpo 100.0 3.8E-50 8.3E-55 366.6 26.3 219 79-309 7-239 (254)
152 cd03264 ABC_drug_resistance_li 100.0 1.3E-50 2.8E-55 359.6 22.3 204 80-301 1-211 (211)
153 PRK13639 cbiO cobalt transport 100.0 3.4E-50 7.4E-55 371.1 25.7 216 80-309 2-227 (275)
154 TIGR02769 nickel_nikE nickel i 100.0 3.7E-50 8E-55 369.0 25.8 228 79-317 2-250 (265)
155 cd03225 ABC_cobalt_CbiO_domain 100.0 1.1E-50 2.4E-55 359.9 21.6 203 81-296 1-211 (211)
156 TIGR03005 ectoine_ehuA ectoine 100.0 3.3E-50 7.1E-55 366.6 25.2 216 80-309 1-237 (252)
157 PRK10908 cell division protein 100.0 2.3E-50 5.1E-55 360.8 23.7 206 80-299 2-217 (222)
158 PRK13648 cbiO cobalt transport 100.0 3.8E-50 8.3E-55 369.6 25.7 219 79-309 7-232 (269)
159 PRK14269 phosphate ABC transpo 100.0 3.2E-50 7E-55 365.4 24.8 219 79-309 2-231 (246)
160 PRK10584 putative ABC transpor 100.0 4.6E-50 9.9E-55 360.2 25.4 211 79-300 6-227 (228)
161 TIGR03410 urea_trans_UrtE urea 100.0 5.9E-50 1.3E-54 360.0 26.1 213 80-306 1-219 (230)
162 TIGR03522 GldA_ABC_ATP gliding 100.0 2.5E-50 5.4E-55 376.5 24.5 213 79-308 2-221 (301)
163 PRK13649 cbiO cobalt transport 100.0 3.9E-50 8.4E-55 371.6 25.4 222 80-309 3-235 (280)
164 PRK11124 artP arginine transpo 100.0 5E-50 1.1E-54 363.2 25.3 216 79-309 2-231 (242)
165 PRK13645 cbiO cobalt transport 100.0 5.1E-50 1.1E-54 372.5 25.9 226 78-310 5-242 (289)
166 PRK11247 ssuB aliphatic sulfon 100.0 4.7E-50 1E-54 366.5 25.2 206 79-304 12-219 (257)
167 TIGR03411 urea_trans_UrtD urea 100.0 7.5E-50 1.6E-54 361.9 26.3 223 79-308 2-231 (242)
168 PRK14242 phosphate transporter 100.0 3.8E-50 8.3E-55 366.3 24.4 219 79-309 6-238 (253)
169 TIGR01188 drrA daunorubicin re 100.0 1.7E-50 3.8E-55 377.8 22.7 206 87-308 1-213 (302)
170 PRK10771 thiQ thiamine transpo 100.0 1.1E-49 2.4E-54 358.8 26.9 214 80-311 2-222 (232)
171 TIGR03873 F420-0_ABC_ATP propo 100.0 4.5E-50 9.7E-55 366.6 24.6 214 80-308 2-226 (256)
172 cd03292 ABC_FtsE_transporter F 100.0 2.7E-50 5.9E-55 358.1 22.5 204 80-297 1-214 (214)
173 PRK14267 phosphate ABC transpo 100.0 5.7E-50 1.2E-54 365.1 25.0 219 79-309 4-238 (253)
174 cd03235 ABC_Metallic_Cations A 100.0 1.2E-50 2.7E-55 360.3 20.0 200 81-301 1-213 (213)
175 PRK11144 modC molybdate transp 100.0 5.2E-50 1.1E-54 381.7 25.5 213 80-310 2-220 (352)
176 PRK15093 antimicrobial peptide 100.0 7.8E-50 1.7E-54 377.5 26.0 226 79-315 3-256 (330)
177 PRK10744 pstB phosphate transp 100.0 1.2E-49 2.5E-54 364.6 26.4 220 78-309 12-245 (260)
178 cd03248 ABCC_TAP TAP, the Tran 100.0 7.6E-50 1.7E-54 358.3 24.4 215 78-297 10-226 (226)
179 PRK10619 histidine/lysine/argi 100.0 7.1E-50 1.5E-54 365.5 24.6 217 79-309 5-242 (257)
180 cd03298 ABC_ThiQ_thiamine_tran 100.0 8.4E-50 1.8E-54 354.4 24.3 204 80-301 1-211 (211)
181 COG4559 ABC-type hemin transpo 100.0 3.3E-50 7.2E-55 345.6 20.4 218 79-311 1-233 (259)
182 cd03269 ABC_putative_ATPase Th 100.0 4.7E-50 1E-54 355.8 21.9 203 80-301 1-210 (210)
183 cd03257 ABC_NikE_OppD_transpor 100.0 1.2E-49 2.5E-54 357.2 24.7 211 80-301 2-228 (228)
184 PRK14235 phosphate transporter 100.0 1.3E-49 2.8E-54 365.8 25.5 220 78-309 18-252 (267)
185 TIGR00954 3a01203 Peroxysomal 100.0 3.5E-49 7.5E-54 403.5 31.1 262 13-294 358-653 (659)
186 PRK14268 phosphate ABC transpo 100.0 1.1E-49 2.4E-54 364.4 24.6 220 78-309 11-243 (258)
187 PRK15112 antimicrobial peptide 100.0 2.3E-49 5.1E-54 364.1 26.6 230 79-319 4-252 (267)
188 cd03262 ABC_HisP_GlnQ_permease 100.0 6.2E-50 1.3E-54 355.5 22.0 203 80-297 1-213 (213)
189 PRK09984 phosphonate/organopho 100.0 2.2E-49 4.8E-54 363.2 26.3 224 79-318 4-250 (262)
190 PRK09473 oppD oligopeptide tra 100.0 2.1E-49 4.5E-54 374.2 26.5 229 79-315 12-259 (330)
191 TIGR03415 ABC_choXWV_ATP choli 100.0 1.4E-49 3E-54 380.2 25.6 212 84-309 29-255 (382)
192 PRK10247 putative ABC transpor 100.0 1.1E-49 2.5E-54 357.3 22.9 212 79-304 7-223 (225)
193 PRK14240 phosphate transporter 100.0 3.8E-49 8.2E-54 359.1 26.2 221 77-309 1-235 (250)
194 cd03369 ABCC_NFT1 Domain 2 of 100.0 4.1E-49 9E-54 349.1 25.7 202 79-303 6-207 (207)
195 TIGR01277 thiQ thiamine ABC tr 100.0 3.1E-49 6.8E-54 351.5 24.8 205 80-302 1-212 (213)
196 PRK14259 phosphate ABC transpo 100.0 4.2E-49 9E-54 362.8 26.0 219 79-309 13-254 (269)
197 COG0444 DppD ABC-type dipeptid 100.0 2.1E-49 4.6E-54 362.2 23.3 226 80-316 2-252 (316)
198 COG4598 HisP ABC-type histidin 100.0 1.7E-50 3.6E-55 339.4 14.7 217 79-310 6-243 (256)
199 PRK13547 hmuV hemin importer A 100.0 4.2E-49 9.2E-54 363.1 25.5 216 80-309 2-245 (272)
200 PRK14248 phosphate ABC transpo 100.0 5.1E-49 1.1E-53 361.9 26.0 219 79-309 21-253 (268)
201 PRK14274 phosphate ABC transpo 100.0 6.3E-49 1.4E-53 359.6 26.4 219 79-309 12-244 (259)
202 PRK11248 tauB taurine transpor 100.0 4E-49 8.7E-54 360.2 24.5 205 80-303 2-215 (255)
203 TIGR02142 modC_ABC molybdenum 100.0 3.7E-49 8.1E-54 376.2 24.8 211 84-310 4-223 (354)
204 COG1123 ATPase components of v 100.0 2.1E-49 4.5E-54 385.9 23.4 230 79-319 280-531 (539)
205 TIGR01978 sufC FeS assembly AT 100.0 3.1E-49 6.8E-54 357.8 23.0 217 80-307 1-233 (243)
206 PRK14245 phosphate ABC transpo 100.0 4.8E-49 1E-53 358.5 24.3 219 79-309 3-235 (250)
207 PRK14253 phosphate ABC transpo 100.0 7.3E-49 1.6E-53 357.0 25.1 220 78-309 2-234 (249)
208 PRK14251 phosphate ABC transpo 100.0 5.1E-49 1.1E-53 358.4 24.0 219 79-309 4-236 (251)
209 cd03246 ABCC_Protease_Secretio 100.0 4.6E-49 9.9E-54 339.6 22.4 173 80-297 1-173 (173)
210 PRK14239 phosphate transporter 100.0 8.8E-49 1.9E-53 357.0 25.4 219 79-309 5-237 (252)
211 PRK14270 phosphate ABC transpo 100.0 1.3E-48 2.9E-53 355.8 26.2 219 79-309 4-236 (251)
212 PRK11701 phnK phosphonate C-P 100.0 9.6E-49 2.1E-53 358.2 25.3 221 79-309 6-242 (258)
213 COG4181 Predicted ABC-type tra 100.0 1E-49 2.2E-54 332.2 17.0 211 79-300 6-227 (228)
214 PRK14238 phosphate transporter 100.0 2.7E-48 5.9E-53 357.7 28.0 219 79-309 24-256 (271)
215 TIGR03740 galliderm_ABC gallid 100.0 6.3E-49 1.4E-53 351.8 23.1 207 80-305 1-210 (223)
216 PRK14256 phosphate ABC transpo 100.0 2.4E-48 5.2E-53 354.3 27.0 219 79-309 4-237 (252)
217 cd03247 ABCC_cytochrome_bd The 100.0 6.5E-49 1.4E-53 340.1 22.1 178 80-301 1-178 (178)
218 PRK14262 phosphate ABC transpo 100.0 1.1E-48 2.4E-53 356.0 24.7 219 79-309 3-235 (250)
219 PRK14241 phosphate transporter 100.0 9.6E-49 2.1E-53 358.2 24.4 219 79-309 4-243 (258)
220 PRK14237 phosphate transporter 100.0 2.1E-48 4.6E-53 357.7 26.8 219 79-309 20-252 (267)
221 PRK14249 phosphate ABC transpo 100.0 1.8E-48 4E-53 354.8 25.9 219 79-309 4-236 (251)
222 PRK10419 nikE nickel transport 100.0 1.7E-48 3.6E-53 358.6 25.2 233 78-317 2-250 (268)
223 cd03299 ABC_ModC_like Archeal 100.0 2.8E-48 6.1E-53 350.4 25.9 213 80-309 1-220 (235)
224 cd03300 ABC_PotA_N PotA is an 100.0 7.6E-49 1.7E-53 353.4 22.1 214 80-309 1-221 (232)
225 PRK14243 phosphate transporter 100.0 2.1E-48 4.7E-53 357.1 25.2 219 79-309 10-249 (264)
226 TIGR01271 CFTR_protein cystic 100.0 1.1E-47 2.4E-52 420.4 35.4 289 4-317 322-645 (1490)
227 PRK14260 phosphate ABC transpo 100.0 1.5E-48 3.3E-53 357.1 23.9 221 77-309 5-244 (259)
228 PRK14275 phosphate ABC transpo 100.0 4E-48 8.6E-53 359.2 26.6 219 79-309 39-271 (286)
229 PRK14254 phosphate ABC transpo 100.0 7.6E-48 1.7E-52 357.1 27.9 219 79-309 39-270 (285)
230 PRK14244 phosphate ABC transpo 100.0 1.4E-48 3.1E-53 355.6 22.4 218 80-309 6-238 (251)
231 PRK14261 phosphate ABC transpo 100.0 3.4E-48 7.5E-53 353.5 24.8 219 79-309 6-238 (253)
232 TIGR02982 heterocyst_DevA ABC 100.0 2.8E-48 6.1E-53 347.0 23.5 207 80-297 2-219 (220)
233 PRK14236 phosphate transporter 100.0 4.4E-48 9.6E-53 356.5 25.4 219 79-309 25-257 (272)
234 PRK14258 phosphate ABC transpo 100.0 4E-48 8.7E-53 354.7 24.9 221 79-309 7-246 (261)
235 cd03250 ABCC_MRP_domain1 Domai 100.0 4.6E-48 9.9E-53 341.7 24.3 199 80-296 1-204 (204)
236 PRK14265 phosphate ABC transpo 100.0 8.7E-48 1.9E-52 354.9 27.0 219 79-309 20-259 (274)
237 PRK14271 phosphate ABC transpo 100.0 5.6E-48 1.2E-52 356.5 25.7 219 79-309 21-252 (276)
238 TIGR00968 3a0106s01 sulfate AB 100.0 5E-48 1.1E-52 349.3 24.7 214 80-309 1-221 (237)
239 cd03297 ABC_ModC_molybdenum_tr 100.0 2.5E-48 5.4E-53 345.8 22.3 204 80-301 2-214 (214)
240 PRK14272 phosphate ABC transpo 100.0 5.9E-48 1.3E-52 351.6 25.1 219 79-309 4-237 (252)
241 PRK15439 autoinducer 2 ABC tra 100.0 3.8E-48 8.3E-53 386.0 25.8 215 79-308 11-229 (510)
242 PRK14255 phosphate ABC transpo 100.0 7.3E-48 1.6E-52 351.0 25.0 219 79-309 5-237 (252)
243 TIGR02323 CP_lyasePhnK phospho 100.0 9.8E-48 2.1E-52 350.4 25.6 221 79-309 3-239 (253)
244 PRK14266 phosphate ABC transpo 100.0 1.1E-47 2.3E-52 349.5 25.4 220 78-309 2-235 (250)
245 PRK15056 manganese/iron transp 100.0 8.3E-48 1.8E-52 354.7 24.5 212 79-308 6-230 (272)
246 KOG0054 Multidrug resistance-a 100.0 3.3E-47 7.2E-52 402.1 32.4 295 5-318 443-741 (1381)
247 PRK10261 glutathione transport 100.0 7.3E-48 1.6E-52 391.9 26.4 226 79-315 313-561 (623)
248 PRK10418 nikD nickel transport 100.0 1.6E-47 3.5E-52 349.3 26.0 224 79-319 4-243 (254)
249 PRK10762 D-ribose transporter 100.0 4.9E-48 1.1E-52 384.6 24.3 218 79-307 4-229 (501)
250 cd03290 ABCC_SUR1_N The SUR do 100.0 1.8E-47 4E-52 341.2 24.8 209 81-296 2-218 (218)
251 PRK09700 D-allose transporter 100.0 4.3E-48 9.4E-53 385.8 23.1 224 79-308 5-234 (510)
252 cd03230 ABC_DR_subfamily_A Thi 100.0 8.1E-48 1.8E-52 331.8 21.5 171 80-297 1-173 (173)
253 cd03229 ABC_Class3 This class 100.0 9.1E-48 2E-52 333.0 21.7 174 80-296 1-178 (178)
254 PRK13549 xylose transporter AT 100.0 4.5E-48 9.8E-53 385.3 22.5 219 79-308 5-232 (506)
255 cd03228 ABCC_MRP_Like The MRP 100.0 1.1E-47 2.4E-52 330.3 21.7 171 80-296 1-171 (171)
256 PRK14252 phosphate ABC transpo 100.0 2.4E-47 5.2E-52 350.3 25.2 218 79-308 16-249 (265)
257 COG4604 CeuD ABC-type enteroch 100.0 5.1E-49 1.1E-53 334.8 13.0 224 79-317 1-233 (252)
258 TIGR03608 L_ocin_972_ABC putat 100.0 5.9E-48 1.3E-52 341.1 20.4 196 82-292 1-206 (206)
259 cd03291 ABCC_CFTR1 The CFTR su 100.0 2E-46 4.3E-51 346.6 30.9 239 52-317 15-256 (282)
260 PRK10938 putative molybdenum t 100.0 1.1E-47 2.5E-52 381.1 24.3 213 79-309 3-225 (490)
261 PRK14263 phosphate ABC transpo 100.0 3.6E-47 7.9E-52 348.4 25.5 218 80-309 9-246 (261)
262 cd03234 ABCG_White The White s 100.0 1E-47 2.3E-52 344.7 21.3 207 80-301 4-226 (226)
263 PRK09544 znuC high-affinity zi 100.0 5.4E-47 1.2E-51 345.3 26.2 210 79-317 4-217 (251)
264 COG1123 ATPase components of v 100.0 8.4E-48 1.8E-52 374.7 21.9 229 79-316 5-253 (539)
265 PRK03695 vitamin B12-transport 100.0 3.8E-47 8.3E-52 345.8 24.7 209 81-309 2-223 (248)
266 PRK14264 phosphate ABC transpo 100.0 4.9E-47 1.1E-51 354.9 26.0 219 79-309 45-290 (305)
267 CHL00131 ycf16 sulfate ABC tra 100.0 5.1E-47 1.1E-51 345.4 24.2 219 79-305 7-238 (252)
268 PRK14246 phosphate ABC transpo 100.0 4.2E-47 9E-52 347.3 23.6 219 79-309 10-242 (257)
269 cd03267 ABC_NatA_like Similar 100.0 2.3E-47 4.9E-52 344.8 21.5 195 95-301 34-236 (236)
270 PRK13538 cytochrome c biogenes 100.0 4.5E-47 9.8E-52 335.5 21.7 197 80-292 2-202 (204)
271 cd03231 ABC_CcmA_heme_exporter 100.0 8.5E-47 1.8E-51 333.0 22.9 196 80-292 1-198 (201)
272 PRK10261 glutathione transport 100.0 5.6E-47 1.2E-51 385.4 24.8 220 79-309 12-259 (623)
273 cd03233 ABC_PDR_domain1 The pl 100.0 9E-47 2E-51 333.2 22.8 193 79-301 3-202 (202)
274 PRK13540 cytochrome c biogenes 100.0 5E-47 1.1E-51 334.2 20.9 196 80-291 2-198 (200)
275 cd03213 ABCG_EPDR ABCG transpo 100.0 5.9E-47 1.3E-51 332.4 21.1 184 79-301 3-194 (194)
276 cd03215 ABC_Carb_Monos_II This 100.0 5.9E-47 1.3E-51 329.0 20.8 173 79-297 4-182 (182)
277 COG4161 ArtP ABC-type arginine 100.0 3E-47 6.4E-52 314.9 17.7 216 79-309 2-231 (242)
278 PRK15134 microcin C ABC transp 100.0 8.2E-47 1.8E-51 378.1 24.6 220 79-309 5-247 (529)
279 TIGR01184 ntrCD nitrate transp 100.0 5E-47 1.1E-51 341.3 20.7 193 98-306 1-202 (230)
280 PRK10982 galactose/methyl gala 100.0 5E-47 1.1E-51 376.5 22.6 215 82-307 1-222 (491)
281 PTZ00243 ABC transporter; Prov 100.0 8.3E-46 1.8E-50 406.3 33.9 295 4-318 487-879 (1560)
282 PRK11288 araG L-arabinose tran 100.0 1.3E-46 2.8E-51 374.4 24.9 214 79-303 4-224 (501)
283 cd03214 ABC_Iron-Siderophores_ 100.0 7.3E-47 1.6E-51 327.9 20.2 178 81-300 1-179 (180)
284 PRK15134 microcin C ABC transp 100.0 6.7E-47 1.5E-51 378.8 22.9 219 79-309 275-516 (529)
285 cd03217 ABC_FeS_Assembly ABC-t 100.0 2.1E-46 4.6E-51 330.3 23.4 184 80-304 1-190 (200)
286 COG4619 ABC-type uncharacteriz 100.0 5.9E-48 1.3E-52 320.6 12.5 205 80-297 4-212 (223)
287 cd03232 ABC_PDR_domain2 The pl 100.0 8.7E-47 1.9E-51 330.7 20.6 183 79-301 3-192 (192)
288 PRK09580 sufC cysteine desulfu 100.0 2.3E-46 5E-51 340.2 23.5 221 80-306 2-233 (248)
289 COG1129 MglA ABC-type sugar tr 100.0 1.5E-46 3.2E-51 363.7 23.5 219 79-303 8-229 (500)
290 TIGR02633 xylG D-xylose ABC tr 100.0 1.8E-46 4E-51 373.3 24.4 217 80-307 2-229 (500)
291 TIGR02770 nickel_nikD nickel i 100.0 1.5E-46 3.4E-51 338.0 21.6 200 97-309 1-216 (230)
292 COG4525 TauB ABC-type taurine 100.0 3.4E-47 7.5E-52 323.2 16.0 210 77-303 1-219 (259)
293 TIGR03269 met_CoM_red_A2 methy 100.0 1.3E-46 2.9E-51 376.0 22.6 215 80-308 1-258 (520)
294 TIGR03269 met_CoM_red_A2 methy 100.0 1.7E-46 3.7E-51 375.1 23.4 223 79-308 279-517 (520)
295 PRK13549 xylose transporter AT 100.0 8.6E-47 1.9E-51 376.1 20.8 226 79-307 259-493 (506)
296 COG4152 ABC-type uncharacteriz 100.0 2.2E-47 4.8E-52 334.4 14.4 215 79-308 2-219 (300)
297 PRK13543 cytochrome c biogenes 100.0 3.5E-46 7.7E-51 332.2 22.4 198 79-294 11-212 (214)
298 cd03223 ABCD_peroxisomal_ALDP 100.0 4.5E-46 9.7E-51 319.0 21.1 164 80-296 1-164 (166)
299 cd03216 ABC_Carb_Monos_I This 100.0 7.6E-46 1.6E-50 316.6 22.3 160 80-299 1-162 (163)
300 PRK09700 D-allose transporter 100.0 1.7E-46 3.6E-51 374.4 20.7 221 79-307 265-497 (510)
301 PRK13539 cytochrome c biogenes 100.0 5.9E-46 1.3E-50 329.1 21.6 197 79-294 2-200 (207)
302 TIGR02324 CP_lyasePhnL phospho 100.0 6.7E-46 1.5E-50 332.3 21.4 202 80-292 2-222 (224)
303 COG4172 ABC-type uncharacteriz 100.0 9.7E-46 2.1E-50 343.4 22.6 225 79-315 276-524 (534)
304 COG4608 AppF ABC-type oligopep 100.0 4E-46 8.7E-51 334.0 19.0 197 79-317 4-209 (268)
305 TIGR01189 ccmA heme ABC export 100.0 7.9E-46 1.7E-50 326.0 20.1 195 80-291 1-197 (198)
306 COG3845 ABC-type uncharacteriz 100.0 5.6E-46 1.2E-50 353.6 20.6 217 79-302 4-223 (501)
307 TIGR02633 xylG D-xylose ABC tr 100.0 1.3E-45 2.8E-50 367.2 22.3 224 79-305 257-489 (500)
308 TIGR01166 cbiO cobalt transpor 100.0 8.6E-46 1.9E-50 323.6 18.4 176 95-282 5-189 (190)
309 PRK13546 teichoic acids export 100.0 5.3E-45 1.2E-49 334.3 24.2 214 79-317 4-241 (264)
310 COG4148 ModC ABC-type molybdat 100.0 6.3E-46 1.4E-50 330.7 17.0 202 97-310 13-220 (352)
311 TIGR03771 anch_rpt_ABC anchore 100.0 3.6E-45 7.7E-50 327.8 20.2 196 103-317 1-209 (223)
312 TIGR01257 rim_protein retinal- 100.0 6.5E-45 1.4E-49 399.0 26.0 216 79-308 1937-2159(2272)
313 PRK13545 tagH teichoic acids e 100.0 2E-44 4.3E-49 352.3 26.0 212 79-315 21-239 (549)
314 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 2.3E-45 5.1E-50 329.2 17.6 198 77-301 20-224 (224)
315 PRK13541 cytochrome c biogenes 100.0 7.5E-45 1.6E-49 319.1 20.2 190 80-289 2-192 (195)
316 PRK10762 D-ribose transporter 100.0 5.8E-45 1.3E-49 362.5 19.9 218 79-307 257-483 (501)
317 TIGR01257 rim_protein retinal- 100.0 1.9E-44 4.1E-49 395.4 25.7 215 79-308 928-1149(2272)
318 PRK11288 araG L-arabinose tran 100.0 6.1E-45 1.3E-49 362.4 19.8 219 79-307 257-484 (501)
319 PRK15064 ABC transporter ATP-b 100.0 4.8E-44 1E-48 358.2 24.6 209 80-308 2-242 (530)
320 PRK10535 macrolide transporter 100.0 6.4E-44 1.4E-48 364.4 25.6 217 79-307 4-231 (648)
321 PRK15064 ABC transporter ATP-b 100.0 6.2E-44 1.3E-48 357.4 24.0 202 79-309 319-526 (530)
322 PRK15439 autoinducer 2 ABC tra 100.0 2.7E-44 5.9E-49 358.3 19.5 215 79-309 268-493 (510)
323 PRK11819 putative ABC transpor 100.0 9.7E-44 2.1E-48 357.7 22.9 210 79-308 6-250 (556)
324 TIGR01187 potA spermidine/putr 100.0 5.9E-44 1.3E-48 336.7 19.5 184 113-309 1-191 (325)
325 cd03237 ABC_RNaseL_inhibitor_d 100.0 2.9E-43 6.4E-48 319.7 21.8 196 87-307 1-206 (246)
326 PRK10938 putative molybdenum t 100.0 9.3E-44 2E-48 353.0 19.7 209 79-301 260-485 (490)
327 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 8.3E-43 1.8E-47 350.8 26.2 210 79-308 4-248 (552)
328 PLN03211 ABC transporter G-25; 100.0 1.5E-43 3.3E-48 361.0 20.9 201 95-307 81-295 (659)
329 PRK10982 galactose/methyl gala 100.0 1.2E-43 2.5E-48 352.4 19.7 215 79-306 250-478 (491)
330 COG4172 ABC-type uncharacteriz 100.0 7.2E-43 1.6E-47 324.4 21.0 228 79-317 6-257 (534)
331 COG1119 ModF ABC-type molybden 100.0 2.2E-43 4.7E-48 310.6 16.1 211 79-302 31-256 (257)
332 cd03236 ABC_RNaseL_inhibitor_d 100.0 2.2E-43 4.8E-48 322.0 16.5 202 83-300 4-219 (255)
333 PRK13409 putative ATPase RIL; 100.0 1.7E-42 3.8E-47 349.2 23.1 195 79-302 340-536 (590)
334 COG4674 Uncharacterized ABC-ty 100.0 9.8E-43 2.1E-47 295.9 16.1 227 79-312 5-239 (249)
335 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 3.2E-42 7E-47 288.4 19.1 143 80-296 1-144 (144)
336 PRK15177 Vi polysaccharide exp 100.0 5.8E-42 1.3E-46 304.9 20.5 186 97-308 2-192 (213)
337 PRK11819 putative ABC transpor 100.0 9.8E-42 2.1E-46 343.2 24.8 203 79-309 324-534 (556)
338 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 9.8E-42 2.1E-46 343.0 24.0 202 79-308 322-531 (552)
339 COG4167 SapF ABC-type antimicr 100.0 8.9E-42 1.9E-46 287.5 18.6 233 79-321 4-254 (267)
340 COG1101 PhnK ABC-type uncharac 100.0 2.1E-42 4.5E-47 298.1 15.1 221 80-302 2-232 (263)
341 cd03222 ABC_RNaseL_inhibitor T 100.0 2.1E-41 4.6E-46 292.2 18.0 157 83-308 4-163 (177)
342 PRK10636 putative ABC transpor 100.0 3.7E-41 8.1E-46 343.3 22.9 199 79-307 312-516 (638)
343 TIGR00955 3a01204 The Eye Pigm 100.0 1.5E-41 3.3E-46 345.3 19.9 203 94-307 37-255 (617)
344 PRK10636 putative ABC transpor 100.0 8.7E-41 1.9E-45 340.6 24.4 209 80-308 2-236 (638)
345 PRK11147 ABC transporter ATPas 100.0 7.5E-41 1.6E-45 341.4 23.2 199 79-306 319-526 (635)
346 TIGR00956 3a01205 Pleiotropic 100.0 3.8E-41 8.2E-46 366.7 22.2 212 79-304 759-989 (1394)
347 cd00267 ABC_ATPase ABC (ATP-bi 100.0 1.6E-40 3.4E-45 281.8 20.5 155 82-296 2-157 (157)
348 PLN03073 ABC transporter F fam 100.0 1.6E-40 3.6E-45 340.7 23.4 199 79-306 508-712 (718)
349 PRK11147 ABC transporter ATPas 100.0 4.3E-40 9.3E-45 335.8 24.1 209 78-308 2-243 (635)
350 COG0396 sufC Cysteine desulfur 100.0 6.6E-40 1.4E-44 285.6 21.4 218 77-308 1-233 (251)
351 COG4136 ABC-type uncharacteriz 100.0 3.5E-40 7.6E-45 269.7 14.9 198 79-292 2-207 (213)
352 COG0488 Uup ATPase components 100.0 1.4E-39 3.1E-44 321.5 22.0 211 77-308 1-240 (530)
353 COG4586 ABC-type uncharacteriz 100.0 7.7E-40 1.7E-44 291.1 14.7 202 95-308 37-246 (325)
354 cd03238 ABC_UvrA The excision 100.0 5E-39 1.1E-43 277.2 19.4 155 95-296 8-165 (176)
355 PLN03140 ABC transporter G fam 100.0 5E-39 1.1E-43 349.7 23.3 216 79-304 867-1106(1470)
356 PRK13409 putative ATPase RIL; 100.0 9.4E-40 2E-44 329.4 14.6 191 85-295 79-287 (590)
357 COG1134 TagH ABC-type polysacc 100.0 2.6E-38 5.7E-43 278.7 20.0 192 94-308 39-236 (249)
358 TIGR00956 3a01205 Pleiotropic 100.0 7.4E-39 1.6E-43 348.8 18.6 205 95-306 74-298 (1394)
359 PLN03073 ABC transporter F fam 100.0 3.4E-38 7.4E-43 323.6 20.9 221 78-307 176-430 (718)
360 COG4107 PhnK ABC-type phosphon 100.0 2.6E-38 5.7E-43 264.6 15.5 227 79-318 6-252 (258)
361 PLN03140 ABC transporter G fam 100.0 4.3E-38 9.3E-43 342.4 17.0 208 95-307 178-426 (1470)
362 KOG0061 Transporter, ABC super 100.0 3.7E-37 8E-42 311.4 19.4 219 79-307 25-259 (613)
363 COG4133 CcmA ABC-type transpor 100.0 9.3E-38 2E-42 264.4 12.1 189 80-284 3-194 (209)
364 COG4178 ABC-type uncharacteriz 100.0 1E-35 2.2E-40 293.5 27.2 268 6-293 311-587 (604)
365 KOG0059 Lipid exporter ABCA1 a 100.0 2.2E-36 4.7E-41 317.4 17.8 215 79-307 564-786 (885)
366 COG4615 PvdE ABC-type sideroph 100.0 1.7E-35 3.7E-40 274.5 21.0 266 20-301 265-530 (546)
367 COG0488 Uup ATPase components 100.0 8.7E-35 1.9E-39 287.6 26.1 200 79-307 321-524 (530)
368 cd03270 ABC_UvrA_I The excisio 100.0 4.9E-35 1.1E-39 262.7 17.3 192 95-301 8-226 (226)
369 COG4778 PhnL ABC-type phosphon 100.0 1.7E-35 3.6E-40 246.8 10.9 205 79-294 4-227 (235)
370 PF00005 ABC_tran: ABC transpo 100.0 4.3E-35 9.4E-40 242.2 11.7 136 98-246 1-137 (137)
371 COG4138 BtuD ABC-type cobalami 100.0 7E-36 1.5E-40 250.2 5.3 212 79-310 3-223 (248)
372 cd03278 ABC_SMC_barmotin Barmo 100.0 2.2E-34 4.8E-39 253.2 12.7 164 99-294 14-190 (197)
373 cd03271 ABC_UvrA_II The excisi 100.0 9.6E-34 2.1E-38 258.3 16.4 195 96-303 9-261 (261)
374 COG1129 MglA ABC-type sugar tr 100.0 1.5E-32 3.1E-37 266.4 19.8 216 80-305 264-487 (500)
375 cd03279 ABC_sbcCD SbcCD and ot 100.0 5.3E-32 1.2E-36 240.9 14.6 191 79-296 5-210 (213)
376 KOG0060 Long-chain acyl-CoA tr 100.0 2.2E-30 4.9E-35 250.1 25.9 267 13-295 342-642 (659)
377 cd03272 ABC_SMC3_euk Eukaryoti 100.0 5.6E-32 1.2E-36 245.0 12.1 195 79-293 3-234 (243)
378 cd03273 ABC_SMC2_euk Eukaryoti 100.0 3.9E-31 8.4E-36 241.0 13.3 199 79-293 5-242 (251)
379 cd03240 ABC_Rad50 The catalyti 100.0 1.1E-30 2.3E-35 231.0 13.8 165 102-295 17-198 (204)
380 KOG0927 Predicted transporter 100.0 1E-30 2.3E-35 250.8 9.8 199 79-304 389-592 (614)
381 cd03274 ABC_SMC4_euk Eukaryoti 100.0 4.9E-31 1.1E-35 234.4 5.3 179 79-294 5-204 (212)
382 COG4170 SapD ABC-type antimicr 100.0 1E-29 2.2E-34 218.9 13.0 228 79-317 3-258 (330)
383 PRK00635 excinuclease ABC subu 100.0 1.1E-28 2.3E-33 267.9 20.9 213 79-308 600-906 (1809)
384 COG3845 ABC-type uncharacteriz 100.0 2.4E-28 5.1E-33 233.3 19.5 222 79-305 257-489 (501)
385 PRK00349 uvrA excinuclease ABC 100.0 1.1E-28 2.4E-33 257.8 17.9 111 200-313 812-932 (943)
386 KOG0065 Pleiotropic drug resis 100.0 4.2E-29 9E-34 260.2 10.1 215 80-305 788-1018(1391)
387 COG1245 Predicted ATPase, RNas 100.0 1.2E-27 2.6E-32 225.8 16.5 165 104-293 363-530 (591)
388 cd03275 ABC_SMC1_euk Eukaryoti 100.0 6E-28 1.3E-32 219.5 13.7 202 79-294 3-233 (247)
389 KOG0927 Predicted transporter 99.9 2.8E-27 6E-32 227.3 16.2 219 79-307 75-308 (614)
390 TIGR00630 uvra excinuclease AB 99.9 4.2E-27 9.1E-32 245.5 18.1 104 200-306 810-923 (924)
391 cd03276 ABC_SMC6_euk Eukaryoti 99.9 2.1E-27 4.5E-32 209.0 11.9 177 97-296 11-192 (198)
392 KOG0062 ATPase component of AB 99.9 1.8E-27 3.8E-32 227.5 10.1 199 79-308 80-285 (582)
393 KOG0064 Peroxisomal long-chain 99.9 1E-25 2.2E-30 215.7 22.1 194 79-292 481-681 (728)
394 KOG0062 ATPase component of AB 99.9 2.4E-26 5.3E-31 219.7 16.6 195 78-299 361-559 (582)
395 KOG0066 eIF2-interacting prote 99.9 2E-26 4.4E-31 216.5 13.2 198 79-305 586-788 (807)
396 KOG2355 Predicted ABC-type tra 99.9 1.9E-24 4.1E-29 185.8 15.9 205 79-300 13-229 (291)
397 cd03280 ABC_MutS2 MutS2 homolo 99.9 5E-24 1.1E-28 187.8 12.2 147 97-301 16-172 (200)
398 cd03239 ABC_SMC_head The struc 99.9 1.3E-23 2.8E-28 181.9 14.0 74 218-294 95-172 (178)
399 cd03277 ABC_SMC5_euk Eukaryoti 99.9 6.8E-23 1.5E-27 182.3 14.8 183 98-296 14-211 (213)
400 COG1245 Predicted ATPase, RNas 99.9 8.2E-24 1.8E-28 200.0 9.0 187 84-294 79-288 (591)
401 cd03241 ABC_RecN RecN ATPase i 99.9 5.1E-23 1.1E-27 190.1 11.9 76 217-296 170-249 (276)
402 KOG0065 Pleiotropic drug resis 99.9 1.1E-22 2.4E-27 212.5 10.9 201 95-307 128-350 (1391)
403 cd03227 ABC_Class2 ABC-type Cl 99.9 4.3E-22 9.2E-27 169.8 11.3 138 100-294 13-155 (162)
404 COG2401 ABC-type ATPase fused 99.9 2.5E-21 5.5E-26 181.4 13.9 180 95-297 396-587 (593)
405 cd03285 ABC_MSH2_euk MutS2 hom 99.9 8.7E-22 1.9E-26 176.2 9.6 152 96-302 18-175 (222)
406 PRK00635 excinuclease ABC subu 99.9 3.7E-21 8.1E-26 209.6 16.4 111 200-313 1681-1801(1809)
407 COG0178 UvrA Excinuclease ATPa 99.9 1.4E-20 3.1E-25 188.4 16.8 111 202-315 806-926 (935)
408 cd03283 ABC_MutS-like MutS-lik 99.8 1.3E-21 2.8E-26 172.3 7.8 144 96-292 15-163 (199)
409 cd03243 ABC_MutS_homologs The 99.8 2.8E-21 6E-26 170.5 6.7 155 99-305 20-176 (202)
410 cd03242 ABC_RecF RecF is a rec 99.8 2.2E-19 4.8E-24 165.4 16.4 74 217-297 183-269 (270)
411 KOG0066 eIF2-interacting prote 99.8 8.4E-21 1.8E-25 178.8 6.5 203 79-300 264-490 (807)
412 PRK00349 uvrA excinuclease ABC 99.8 2.7E-19 5.9E-24 187.5 14.5 106 201-309 472-586 (943)
413 TIGR00630 uvra excinuclease AB 99.8 4.3E-19 9.2E-24 185.8 13.0 105 202-309 471-584 (924)
414 KOG0063 RNAse L inhibitor, ABC 99.8 1.6E-18 3.4E-23 163.1 14.8 197 87-309 343-549 (592)
415 cd03282 ABC_MSH4_euk MutS4 hom 99.8 4.3E-19 9.4E-24 156.7 10.2 139 95-285 16-156 (204)
416 TIGR02858 spore_III_AA stage I 99.8 2.9E-18 6.2E-23 157.3 12.1 142 109-307 112-268 (270)
417 cd03284 ABC_MutS1 MutS1 homolo 99.8 1.4E-18 3E-23 154.9 9.6 155 96-306 19-179 (216)
418 cd00820 PEPCK_HprK Phosphoenol 99.7 7.3E-18 1.6E-22 132.8 6.3 76 96-179 3-78 (107)
419 cd01128 rho_factor Transcripti 99.7 1.2E-17 2.6E-22 151.5 5.5 190 103-317 11-226 (249)
420 cd03281 ABC_MSH5_euk MutS5 hom 99.7 2.7E-16 5.9E-21 139.9 12.8 135 97-285 18-159 (213)
421 PRK00064 recF recombination pr 99.7 9.7E-16 2.1E-20 146.7 16.3 75 217-297 273-359 (361)
422 TIGR01069 mutS2 MutS2 family p 99.6 2E-15 4.3E-20 156.5 14.3 152 79-284 295-449 (771)
423 smart00534 MUTSac ATPase domai 99.6 2.4E-16 5.2E-21 137.2 6.3 70 216-288 60-130 (185)
424 PF02463 SMC_N: RecF/RecN/SMC 99.6 1.2E-15 2.5E-20 136.1 9.0 72 217-292 136-211 (220)
425 PRK07721 fliI flagellum-specif 99.6 4.6E-14 1E-18 137.5 17.5 171 95-305 146-340 (438)
426 KOG0063 RNAse L inhibitor, ABC 99.6 2.3E-15 5E-20 142.0 6.4 172 106-294 98-288 (592)
427 TIGR00606 rad50 rad50. This fa 99.6 2.2E-14 4.8E-19 157.4 13.5 122 167-293 1153-1289(1311)
428 cd03287 ABC_MSH3_euk MutS3 hom 99.6 2.3E-14 4.9E-19 128.1 10.9 135 96-284 19-158 (222)
429 PTZ00132 GTP-binding nuclear p 99.5 4.8E-15 1E-19 131.7 5.0 44 222-265 157-205 (215)
430 TIGR00634 recN DNA repair prot 99.5 2.4E-14 5.3E-19 144.6 9.6 76 217-296 440-519 (563)
431 PRK00409 recombination and DNA 99.5 1.1E-13 2.3E-18 144.1 13.9 77 216-297 389-467 (782)
432 PRK10869 recombination and rep 99.5 9.7E-14 2.1E-18 139.6 10.3 75 218-296 431-509 (553)
433 PHA02562 46 endonuclease subun 99.5 6.6E-14 1.4E-18 141.5 8.0 77 216-297 467-555 (562)
434 PRK08533 flagellar accessory p 99.4 1.6E-12 3.6E-17 117.0 13.6 158 80-293 8-184 (230)
435 COG0178 UvrA Excinuclease ATPa 99.4 8.8E-13 1.9E-17 133.0 13.0 111 200-313 463-582 (935)
436 PRK13695 putative NTPase; Prov 99.4 1.7E-13 3.7E-18 118.0 6.8 77 217-300 78-156 (174)
437 TIGR00618 sbcc exonuclease Sbc 99.4 4.1E-13 8.9E-18 144.6 10.4 78 215-295 948-1036(1042)
438 cd03286 ABC_MSH6_euk MutS6 hom 99.4 2.8E-12 6.1E-17 114.3 11.9 138 96-285 18-158 (218)
439 PRK03918 chromosome segregatio 99.4 1.1E-12 2.4E-17 139.2 10.1 76 216-294 787-868 (880)
440 TIGR02788 VirB11 P-type DNA tr 99.4 1.1E-12 2.4E-17 123.1 7.9 144 101-307 137-280 (308)
441 PRK01156 chromosome segregatio 99.4 2.7E-12 5.9E-17 136.5 11.3 78 215-293 799-883 (895)
442 PF13304 AAA_21: AAA domain; P 99.3 1.1E-12 2.3E-17 116.8 5.6 65 216-283 235-302 (303)
443 cd01124 KaiC KaiC is a circadi 99.3 2.4E-11 5.2E-16 105.1 12.6 75 216-293 70-163 (187)
444 TIGR03238 dnd_assoc_3 dnd syst 99.3 1E-12 2.2E-17 127.5 3.9 67 96-165 20-87 (504)
445 COG3910 Predicted ATPase [Gene 99.3 6.1E-11 1.3E-15 101.3 12.6 79 216-298 128-207 (233)
446 PRK13830 conjugal transfer pro 99.3 3.2E-11 6.9E-16 126.7 13.1 69 232-303 649-728 (818)
447 PRK10246 exonuclease subunit S 99.3 1.4E-11 3.1E-16 132.5 10.7 78 214-294 946-1032(1047)
448 PRK06793 fliI flagellum-specif 99.3 1.4E-11 3.1E-16 119.4 9.2 167 80-301 131-304 (432)
449 TIGR02168 SMC_prok_B chromosom 99.3 7.3E-12 1.6E-16 136.1 8.0 74 216-293 1088-1165(1179)
450 cd01120 RecA-like_NTPases RecA 99.2 7.5E-11 1.6E-15 98.7 10.6 130 110-283 1-140 (165)
451 PRK02224 chromosome segregatio 99.2 7.3E-11 1.6E-15 125.4 9.3 77 216-295 780-869 (880)
452 TIGR02169 SMC_prok_A chromosom 99.2 7.4E-11 1.6E-15 128.4 9.2 75 216-294 1073-1151(1164)
453 cd01131 PilT Pilus retraction 99.1 3.8E-10 8.2E-15 99.3 10.0 118 110-292 3-121 (198)
454 PRK06067 flagellar accessory p 99.1 4.8E-10 1E-14 101.0 10.4 73 218-293 101-186 (234)
455 PRK06002 fliI flagellum-specif 99.0 4.3E-10 9.3E-15 109.4 7.4 85 79-166 139-230 (450)
456 smart00382 AAA ATPases associa 99.0 1.9E-08 4.2E-13 80.9 15.2 119 107-279 1-125 (148)
457 TIGR02655 circ_KaiC circadian 99.0 4.1E-11 8.8E-16 119.1 -1.7 157 104-293 17-190 (484)
458 PRK07196 fliI flagellum-specif 98.9 7.7E-10 1.7E-14 107.5 4.6 82 95-177 143-234 (434)
459 TIGR01026 fliI_yscN ATPase Fli 98.9 9.9E-09 2.1E-13 100.4 12.2 177 95-305 151-345 (440)
460 cd01125 repA Hexameric Replica 98.9 3.1E-09 6.7E-14 96.1 7.5 46 232-280 108-159 (239)
461 TIGR00611 recf recF protein. A 98.9 2.5E-09 5.4E-14 102.6 6.5 61 217-283 275-344 (365)
462 PRK06995 flhF flagellar biosyn 98.9 3.8E-09 8.2E-14 104.0 7.9 63 97-178 245-307 (484)
463 cd01130 VirB11-like_ATPase Typ 98.8 2.8E-09 6E-14 92.8 4.8 79 97-178 14-95 (186)
464 TIGR00767 rho transcription te 98.8 9.2E-09 2E-13 98.5 8.6 81 47-134 103-194 (415)
465 PRK05399 DNA mismatch repair p 98.8 1.1E-07 2.4E-12 100.5 16.6 136 96-287 596-737 (854)
466 COG0419 SbcC ATPase involved i 98.8 1.8E-08 3.9E-13 107.5 9.8 79 214-295 812-898 (908)
467 PRK13891 conjugal transfer pro 98.8 2.9E-07 6.2E-12 97.5 18.1 54 228-284 680-734 (852)
468 PRK14079 recF recombination pr 98.8 1.3E-08 2.8E-13 97.2 7.2 75 218-301 264-347 (349)
469 cd02023 UMPK Uridine monophosp 98.7 8.9E-09 1.9E-13 90.3 4.8 109 110-251 1-114 (198)
470 PRK10078 ribose 1,5-bisphospho 98.7 1.4E-08 3.1E-13 88.2 5.4 55 108-165 2-56 (186)
471 TIGR02680 conserved hypothetic 98.7 2.1E-08 4.6E-13 110.5 7.6 60 216-281 1246-1317(1353)
472 PRK09825 idnK D-gluconate kina 98.7 1.3E-08 2.9E-13 87.8 4.8 66 107-178 2-69 (176)
473 TIGR01420 pilT_fam pilus retra 98.7 6.9E-08 1.5E-12 92.0 9.6 114 105-283 119-233 (343)
474 PRK08149 ATP synthase SpaL; Va 98.7 1.9E-08 4.1E-13 97.7 5.6 70 95-165 139-215 (428)
475 PRK00300 gmk guanylate kinase; 98.7 7.5E-09 1.6E-13 91.1 2.0 65 106-175 3-79 (205)
476 TIGR03881 KaiC_arch_4 KaiC dom 98.7 1.1E-08 2.3E-13 91.8 2.5 61 104-165 16-77 (229)
477 PLN03210 Resistant to P. syrin 98.6 9.9E-08 2.1E-12 104.3 10.0 44 100-143 199-243 (1153)
478 TIGR02903 spore_lon_C ATP-depe 98.6 1.4E-07 3.1E-12 96.3 10.0 110 107-262 174-291 (615)
479 TIGR02524 dot_icm_DotB Dot/Icm 98.6 1E-07 2.2E-12 91.2 7.6 72 106-178 132-211 (358)
480 PRK01889 GTPase RsgA; Reviewed 98.6 6.5E-08 1.4E-12 92.6 6.0 80 97-179 184-263 (356)
481 TIGR00235 udk uridine kinase. 98.5 4.5E-08 9.8E-13 86.6 3.3 29 106-134 4-32 (207)
482 TIGR02322 phosphon_PhnN phosph 98.5 2.7E-07 5.8E-12 79.5 6.8 60 108-168 1-76 (179)
483 PRK13898 type IV secretion sys 98.5 7.1E-06 1.5E-10 86.6 18.5 49 231-282 638-687 (800)
484 PRK09862 putative ATP-dependen 98.5 1.3E-07 2.8E-12 93.9 4.5 63 82-147 187-249 (506)
485 PF13555 AAA_29: P-loop contai 98.5 1.1E-07 2.4E-12 67.3 2.9 39 98-136 12-51 (62)
486 PRK07594 type III secretion sy 98.5 1.3E-07 2.8E-12 92.1 4.1 64 79-145 129-192 (433)
487 PF09818 ABC_ATPase: Predicted 98.5 2.5E-06 5.4E-11 82.2 12.7 172 85-297 227-416 (448)
488 PRK10416 signal recognition pa 98.4 1.7E-07 3.6E-12 88.3 4.4 72 106-177 112-190 (318)
489 cd01136 ATPase_flagellum-secre 98.4 2.9E-07 6.4E-12 86.6 6.1 50 95-145 57-106 (326)
490 PRK09270 nucleoside triphospha 98.4 2.8E-07 6.1E-12 82.8 5.1 55 106-164 31-89 (229)
491 PLN02796 D-glycerate 3-kinase 98.4 9.5E-08 2.1E-12 90.1 1.8 60 96-155 80-150 (347)
492 PRK06315 type III secretion sy 98.4 2E-07 4.3E-12 91.0 3.9 82 95-177 152-251 (442)
493 PRK13873 conjugal transfer ATP 98.4 9.7E-06 2.1E-10 85.7 16.2 61 232-295 632-703 (811)
494 TIGR00416 sms DNA repair prote 98.4 9.7E-07 2.1E-11 87.1 8.0 42 104-145 90-132 (454)
495 PRK07960 fliI flagellum-specif 98.4 2.8E-07 6.1E-12 89.8 4.0 69 96-165 164-238 (455)
496 cd00009 AAA The AAA+ (ATPases 98.4 3.9E-06 8.4E-11 68.1 10.1 58 223-281 72-131 (151)
497 PRK09099 type III secretion sy 98.3 4.8E-07 1E-11 88.4 5.2 51 95-146 151-201 (441)
498 TIGR00554 panK_bact pantothena 98.3 4.8E-07 1E-11 84.0 4.9 51 109-160 63-115 (290)
499 cd01121 Sms Sms (bacterial rad 98.3 1.8E-06 4E-11 83.0 9.0 41 104-144 78-119 (372)
500 PF13558 SbcCD_C: Putative exo 98.3 1.1E-06 2.4E-11 67.4 5.9 47 216-262 31-90 (90)
No 1
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.5e-73 Score=557.66 Aligned_cols=314 Identities=50% Similarity=0.817 Sum_probs=293.9
Q ss_pred EeeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcccccccccc-CCcccE
Q 020527 2 AVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQ-RLMGHV 80 (325)
Q Consensus 2 ~~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~i 80 (325)
++++|++++..|+||.|.+++|++|...+..++..++..+..+.++..|.+|+++++|..|..... +...+ ...+.|
T Consensus 389 iL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~--G~~~p~~~~G~I 466 (716)
T KOG0058|consen 389 ILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLT--GTLAPDHLQGVI 466 (716)
T ss_pred HHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCC--CccccccccceE
Confidence 578899999999999999999999999999999999999999999999999999999998864322 22112 345689
Q ss_pred EEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 020527 81 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 160 (325)
Q Consensus 81 ~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~ 160 (325)
+++||+|+|+.+++.++|+|+||+|+|||++|||||||+||||+.++|.++|+|++|+|.+||+|+.+++...+|++||+
T Consensus 467 eF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~ 546 (716)
T KOG0058|consen 467 EFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGL 546 (716)
T ss_pred EEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeee
Confidence 99999999999888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCC--CCChHHHHHHHHHHHHcCCCCE
Q 020527 161 VGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAI 238 (325)
Q Consensus 161 v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~LSgGq~QRv~iAral~~~p~l 238 (325)
|.|+|.||..||+|||.||.. ..+++++..+.+.+..++++..+|.||+|.++++ +||||||||+||||||++||.|
T Consensus 547 V~QEPvLFs~sI~eNI~YG~~-~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~V 625 (716)
T KOG0058|consen 547 VGQEPVLFSGSIRENIAYGLD-NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRV 625 (716)
T ss_pred eeccceeecccHHHHHhcCCC-CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCE
Confidence 999999999999999999965 7789999999999999999999999999999964 8999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcC-HHHHHHH
Q 020527 239 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG-RLYAKLV 317 (325)
Q Consensus 239 lllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~-~~~~~~~ 317 (325)
|||||+||+||.+++..+.+.|.++.+ ++|||+|+|+++.++.||+|+++++|++++.|++++++++. ++|.+++
T Consensus 626 LILDEATSALDaeSE~lVq~aL~~~~~----~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~gly~~Lv 701 (716)
T KOG0058|consen 626 LILDEATSALDAESEYLVQEALDRLMQ----GRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKPNGLYAKLV 701 (716)
T ss_pred EEEechhhhcchhhHHHHHHHHHHhhc----CCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhCcccHHHHHH
Confidence 999999999999999999999998864 68999999999999999999999999999999999999987 7999999
Q ss_pred HHhhh
Q 020527 318 KRQTE 322 (325)
Q Consensus 318 ~~~~~ 322 (325)
++|..
T Consensus 702 ~~q~~ 706 (716)
T KOG0058|consen 702 QRQLD 706 (716)
T ss_pred HHhcc
Confidence 98753
No 2
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=8.8e-72 Score=566.40 Aligned_cols=313 Identities=43% Similarity=0.678 Sum_probs=290.4
Q ss_pred EeeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEE
Q 020527 2 AVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQ 81 (325)
Q Consensus 2 ~~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 81 (325)
++|+|+++|++|++|+|+++||.++.+.+..|+..+++.+.++++...+.+|+.++++.++|...+......+...+.|+
T Consensus 394 iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~~~~~g~I~ 473 (709)
T COG2274 394 ILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIE 473 (709)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccCceEE
Confidence 68999999999999999999999999999999999999999999999999999999999988543221112233445799
Q ss_pred EEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 020527 82 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 161 (325)
Q Consensus 82 ~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v 161 (325)
++||+|+|+.. +.++|+|+||+|++||++||+|+||||||||+|+|+|+|+|++|+|++||.|++..+...+|++||||
T Consensus 474 ~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V 552 (709)
T COG2274 474 FENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYV 552 (709)
T ss_pred EEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEE
Confidence 99999999865 34799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEE
Q 020527 162 GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAIL 239 (325)
Q Consensus 162 ~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~ll 239 (325)
+|++.+|++|++||++++. +...++++.++++.+++++++.++|.||++.+++ .+||||||||++|||||+++|+||
T Consensus 553 ~Q~~~Lf~gSI~eNi~l~~-p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~IL 631 (709)
T COG2274 553 LQDPFLFSGSIRENIALGN-PEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKIL 631 (709)
T ss_pred cccchhhcCcHHHHHhcCC-CCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEE
Confidence 9999999999999999985 4566789999999999999999999999999974 689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHHH
Q 020527 240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKR 319 (325)
Q Consensus 240 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 319 (325)
|||||||+||+.+++.+.+.|.++. .|+|+|+|||+++.++.||||+||++|+|+++|+++++++.++.|.++++.
T Consensus 632 lLDEaTSaLD~~sE~~I~~~L~~~~----~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~~g~y~~l~~~ 707 (709)
T COG2274 632 LLDEATSALDPETEAIILQNLLQIL----QGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQGGLYARLYQQ 707 (709)
T ss_pred EEeCcccccCHhHHHHHHHHHHHHh----cCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHhcChHHHHHhc
Confidence 9999999999999999999999985 478999999999999999999999999999999999999999999999986
Q ss_pred h
Q 020527 320 Q 320 (325)
Q Consensus 320 ~ 320 (325)
|
T Consensus 708 q 708 (709)
T COG2274 708 Q 708 (709)
T ss_pred c
Confidence 5
No 3
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=1.5e-66 Score=535.16 Aligned_cols=308 Identities=37% Similarity=0.514 Sum_probs=280.3
Q ss_pred EeeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEE
Q 020527 2 AVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQ 81 (325)
Q Consensus 2 ~~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 81 (325)
++++|+|++..|.+|+|.++++..+...+..|+..+...+..++++..+++|+.++++.+++.... . .......+.|+
T Consensus 376 il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~-~-~~~~~~~~~I~ 453 (686)
T TIGR03797 376 LFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEA-K-TDPGKLSGAIE 453 (686)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC-c-CCCCCCCceEE
Confidence 457899999999999999999999999999999999999999999999999999999876653211 1 11111234699
Q ss_pred EEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 020527 82 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 161 (325)
Q Consensus 82 ~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v 161 (325)
++||+|+|++. ++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||+++.+++...+|++||||
T Consensus 454 ~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v 532 (686)
T TIGR03797 454 VDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVV 532 (686)
T ss_pred EEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEE
Confidence 99999999643 35799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEE
Q 020527 162 GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAIL 239 (325)
Q Consensus 162 ~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~ll 239 (325)
||++.+|++|++|||.++.+ .+++++.++++.++++++++.+|.|+++.+++ .+||||||||++|||||+++|++|
T Consensus 533 ~Q~~~lf~gTI~eNi~~~~~--~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iL 610 (686)
T TIGR03797 533 LQNGRLMSGSIFENIAGGAP--LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRIL 610 (686)
T ss_pred ccCCccCcccHHHHHhcCCC--CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999843 67888999999999999999999999998874 679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHHH
Q 020527 240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKR 319 (325)
Q Consensus 240 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 319 (325)
|||||||+||+.+++++.+.++++ ++|+|+|||+++.+..||+|++|++|++++.|++++++++++.|++++..
T Consensus 611 iLDEpTS~LD~~te~~i~~~L~~~------~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~~~~y~~l~~~ 684 (686)
T TIGR03797 611 LFDEATSALDNRTQAIVSESLERL------KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREGLFAQLARR 684 (686)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHh------CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHh
Confidence 999999999999999999998876 46999999999999999999999999999999999999988999999886
Q ss_pred h
Q 020527 320 Q 320 (325)
Q Consensus 320 ~ 320 (325)
|
T Consensus 685 q 685 (686)
T TIGR03797 685 Q 685 (686)
T ss_pred c
Confidence 5
No 4
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=7.1e-66 Score=519.72 Aligned_cols=312 Identities=47% Similarity=0.774 Sum_probs=285.4
Q ss_pred EeeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEE
Q 020527 2 AVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQ 81 (325)
Q Consensus 2 ~~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 81 (325)
++++|++++..|.+++|.+++|+.|...+..|+..+...+..++.+..+++|++++++.+++....... .....+.|+
T Consensus 253 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~--~~~~~~~I~ 330 (567)
T COG1132 253 VLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP--LKDTIGSIE 330 (567)
T ss_pred HHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC--CCCCCCeEE
Confidence 356789999999999999999999999999999999999999999999999999999987653222111 112234699
Q ss_pred EEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 020527 82 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 161 (325)
Q Consensus 82 ~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v 161 (325)
++||+|+|+++ +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||+++++++...+|++|++|
T Consensus 331 f~~vsf~y~~~--~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V 408 (567)
T COG1132 331 FENVSFSYPGK--KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIV 408 (567)
T ss_pred EEEEEEEcCCC--CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEE
Confidence 99999999842 4799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEE
Q 020527 162 GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAIL 239 (325)
Q Consensus 162 ~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~ll 239 (325)
||++.+|++||+|||.+|.+ +.+++++.++++.+++++++.++|.|+++.+++ .+||||||||++||||++++|++|
T Consensus 409 ~Qd~~LF~~TI~~NI~~g~~-~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~IL 487 (567)
T COG1132 409 SQDPLLFSGTIRENIALGRP-DATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPIL 487 (567)
T ss_pred cccceeecccHHHHHhcCCC-CCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999954 477899999999999999999999999999983 689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHHH
Q 020527 240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKR 319 (325)
Q Consensus 240 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 319 (325)
|||||||+||+.++..+.+.+.++.+ ++|+++|+|+++.++.||+|++|++|++++.|+|++++++++.|+++++.
T Consensus 488 ILDEaTSalD~~tE~~I~~~l~~l~~----~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~~g~y~~l~~~ 563 (567)
T COG1132 488 ILDEATSALDTETEALIQDALKKLLK----GRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYARLYQA 563 (567)
T ss_pred EEeccccccCHHhHHHHHHHHHHHhc----CCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999998753 57999999999999999999999999999999999999999999999998
Q ss_pred hhh
Q 020527 320 QTE 322 (325)
Q Consensus 320 ~~~ 322 (325)
|..
T Consensus 564 ~~~ 566 (567)
T COG1132 564 QGG 566 (567)
T ss_pred hhc
Confidence 753
No 5
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=5.3e-66 Score=532.80 Aligned_cols=310 Identities=34% Similarity=0.547 Sum_probs=279.5
Q ss_pred EeeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEE
Q 020527 2 AVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQ 81 (325)
Q Consensus 2 ~~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 81 (325)
++++|++++..|++|+|+++++..+...+..|+..+...+..++.+..+.+|+.++++.+++..........+...+.|+
T Consensus 396 il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~~I~ 475 (708)
T TIGR01193 396 ILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELNNLNGDIV 475 (708)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCCCCCCcEE
Confidence 45789999999999999999999999999999999999999999999999999999988765322111011122234699
Q ss_pred EEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 020527 82 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 161 (325)
Q Consensus 82 ~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v 161 (325)
++||+|+|+.. +++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|++||.++.+++...+|++||||
T Consensus 476 ~~~vsf~y~~~--~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v 553 (708)
T TIGR01193 476 INDVSYSYGYG--SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYL 553 (708)
T ss_pred EEEEEEEcCCC--CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEE
Confidence 99999999742 4699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEE
Q 020527 162 GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAIL 239 (325)
Q Consensus 162 ~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~ll 239 (325)
||++.+|++|++|||.++..+..+++++.++++.+++++++.++|.|+++.+++ .+||||||||++||||++++|++|
T Consensus 554 ~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~il 633 (708)
T TIGR01193 554 PQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVL 633 (708)
T ss_pred ecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEE
Confidence 999999999999999997434567888999999999999999999999998864 689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHH
Q 020527 240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVK 318 (325)
Q Consensus 240 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 318 (325)
|||||||+||+.+++.+.+.|.++ +++|+|+|||+++.+..||+|++|++|++++.|++++++++++.|+++++
T Consensus 634 iLDE~Ts~LD~~te~~i~~~L~~~-----~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~~~~y~~l~~ 707 (708)
T TIGR01193 634 ILDESTSNLDTITEKKIVNNLLNL-----QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNGFYASLIH 707 (708)
T ss_pred EEeCccccCCHHHHHHHHHHHHHh-----cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhcCCcHHHHhh
Confidence 999999999999999999999875 26799999999999989999999999999999999999988888988874
No 6
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=1.5e-65 Score=518.78 Aligned_cols=312 Identities=39% Similarity=0.613 Sum_probs=281.3
Q ss_pred eeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEEE
Q 020527 3 VLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQF 82 (325)
Q Consensus 3 ~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 82 (325)
+++|+++++.|.+|+|+++++..+...+..|+..+...+..++.+..+.+|+.++++.+++..... ....+..+.|++
T Consensus 267 ~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~--~~~~~~~~~i~~ 344 (582)
T PRK11176 267 LYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGK--RVIERAKGDIEF 344 (582)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCC--cCCCCCCCeEEE
Confidence 467889999999999999999999999999999999999999999999999999998765422111 111122235999
Q ss_pred EEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEc
Q 020527 83 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG 162 (325)
Q Consensus 83 ~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~ 162 (325)
+||+|+|+++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++...+|++|+|+|
T Consensus 345 ~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~ 423 (582)
T PRK11176 345 RNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVS 423 (582)
T ss_pred EEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEc
Confidence 9999999753 357999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEE
Q 020527 163 QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILL 240 (325)
Q Consensus 163 Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~lll 240 (325)
|++.+|++|++|||.++.+...+++++.++++.++++++++++|.|+++.++. .+||||||||++|||||+++|+++|
T Consensus 424 Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ili 503 (582)
T PRK11176 424 QNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILI 503 (582)
T ss_pred cCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEE
Confidence 99999999999999998543467889999999999999999999999998874 6799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHh
Q 020527 241 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQ 320 (325)
Q Consensus 241 lDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 320 (325)
||||||+||++++..+.+.+.++. +++|+|+|||+++.++.||+|++|++|++++.|++++++..++.|++++..|
T Consensus 504 lDEptsaLD~~t~~~i~~~l~~~~----~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~~~y~~l~~~~ 579 (582)
T PRK11176 504 LDEATSALDTESERAIQAALDELQ----KNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNGVYAQLHKMQ 579 (582)
T ss_pred EECccccCCHHHHHHHHHHHHHHh----CCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhCCChHHHHHHHH
Confidence 999999999999999999999884 3679999999999999999999999999999999999999888999999876
Q ss_pred h
Q 020527 321 T 321 (325)
Q Consensus 321 ~ 321 (325)
.
T Consensus 580 ~ 580 (582)
T PRK11176 580 F 580 (582)
T ss_pred h
Confidence 4
No 7
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=9.3e-66 Score=531.23 Aligned_cols=308 Identities=34% Similarity=0.553 Sum_probs=277.8
Q ss_pred EeeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcccc----c-cccc-cC
Q 020527 2 AVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS----E-GVKL-QR 75 (325)
Q Consensus 2 ~~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~----~-~~~~-~~ 75 (325)
++++|+|++..|++|+|.++++..+...+..|+..+...+..++++..+.+|+.++++.+++..... . .... +.
T Consensus 394 il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~ 473 (710)
T TIGR03796 394 ILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPR 473 (710)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCC
Confidence 4578999999999999999999999999999999999999999999999999999998876532211 0 0011 11
Q ss_pred CcccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHh
Q 020527 76 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 155 (325)
Q Consensus 76 ~~~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r 155 (325)
..+.|+++||+|+|++. ++++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++.+++...+|
T Consensus 474 ~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr 552 (710)
T TIGR03796 474 LSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLA 552 (710)
T ss_pred CCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHH
Confidence 23469999999999853 35799999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHc
Q 020527 156 EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAIL 233 (325)
Q Consensus 156 ~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~ 233 (325)
++|+||||++.+|++|++|||.++. +..+++++.++++.++++++++++|.|+++.+++ .+||||||||++|||||+
T Consensus 553 ~~i~~v~Q~~~lf~gTi~eNi~l~~-~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall 631 (710)
T TIGR03796 553 NSVAMVDQDIFLFEGTVRDNLTLWD-PTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALV 631 (710)
T ss_pred hheeEEecCChhhhccHHHHhhCCC-CCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999874 3567888999999999999999999999998874 689999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHH
Q 020527 234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLY 313 (325)
Q Consensus 234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~ 313 (325)
++|++||||||||+||+.+++++.+.+++ .++|+|+|||+++.+..||||++|++|++++.|++++++++++.|
T Consensus 632 ~~p~iliLDEptS~LD~~te~~i~~~l~~------~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~~~~y 705 (710)
T TIGR03796 632 RNPSILILDEATSALDPETEKIIDDNLRR------RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVGGAY 705 (710)
T ss_pred hCCCEEEEECccccCCHHHHHHHHHHHHh------cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHcCCcH
Confidence 99999999999999999999999999875 267999999999999999999999999999999999999988889
Q ss_pred HHHH
Q 020527 314 AKLV 317 (325)
Q Consensus 314 ~~~~ 317 (325)
++++
T Consensus 706 ~~l~ 709 (710)
T TIGR03796 706 ARLI 709 (710)
T ss_pred HHHh
Confidence 8876
No 8
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.1e-65 Score=518.42 Aligned_cols=308 Identities=30% Similarity=0.470 Sum_probs=269.3
Q ss_pred hHHHHhcCCcCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcccccccccc-C
Q 020527 6 GGMSIMIGQVSPEQL---------TKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQ-R 75 (325)
Q Consensus 6 g~~~v~~g~it~g~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~-~ 75 (325)
+++.+ .|.+|+|.+ +++..+...+..|+..+...+..+.++..+.+|+.++++.+++.... .....+ .
T Consensus 268 ~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~-~~~~~~~~ 345 (588)
T PRK11174 268 FGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFLETPLAHPQQ-GEKELASN 345 (588)
T ss_pred HHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC-CccccCCC
Confidence 44443 488888864 22335667788999999999999999999999999999876542211 111111 1
Q ss_pred CcccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHh
Q 020527 76 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 155 (325)
Q Consensus 76 ~~~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r 155 (325)
....|+++||+|.|+++ +++|+|+||+|++||++||+||||||||||+++|+|++ |++|+|.+||.++.+++...+|
T Consensus 346 ~~~~i~~~~vsf~~~~~--~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr 422 (588)
T PRK11174 346 DPVTIEAEDLEILSPDG--KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWR 422 (588)
T ss_pred CCceEEEEeeEEeccCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHH
Confidence 12359999999877542 46999999999999999999999999999999999999 9999999999999999999999
Q ss_pred cceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHc
Q 020527 156 EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAIL 233 (325)
Q Consensus 156 ~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~ 233 (325)
++|+||||+|.+|++|++|||.++. +..+++++.++++.++++++++++|.|+++.+++ .+||||||||++|||||+
T Consensus 423 ~~i~~v~Q~~~LF~~TI~eNI~~g~-~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll 501 (588)
T PRK11174 423 KHLSWVGQNPQLPHGTLRDNVLLGN-PDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALL 501 (588)
T ss_pred hheEEecCCCcCCCcCHHHHhhcCC-CCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999984 4577899999999999999999999999998874 579999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHH
Q 020527 234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLY 313 (325)
Q Consensus 234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~ 313 (325)
++|+|||||||||+||+++++.+.+.|.++. +++|+|+|||+++.+..||+|++|++|++++.|++++++++++.|
T Consensus 502 ~~~~IliLDE~TSaLD~~te~~i~~~l~~~~----~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~~~~~~y 577 (588)
T PRK11174 502 QPCQLLLLDEPTASLDAHSEQLVMQALNAAS----RRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQAGGLF 577 (588)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHh----CCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHHHhcchHH
Confidence 9999999999999999999999999998884 368999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhc
Q 020527 314 AKLVKRQTES 323 (325)
Q Consensus 314 ~~~~~~~~~~ 323 (325)
++++..|.+.
T Consensus 578 ~~l~~~q~~~ 587 (588)
T PRK11174 578 ATLLAHRQEE 587 (588)
T ss_pred HHHHHHhhcC
Confidence 9999988764
No 9
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2e-65 Score=529.61 Aligned_cols=315 Identities=46% Similarity=0.707 Sum_probs=286.0
Q ss_pred EeeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcccc-ccccccCCcccE
Q 020527 2 AVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS-EGVKLQRLMGHV 80 (325)
Q Consensus 2 ~~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~i 80 (325)
.+|+|++++..|.+++.+++-.+.....-...+......+.++.++..|+.+++.+++.+|...... .+...+...+.|
T Consensus 909 ~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I 988 (1228)
T KOG0055|consen 909 SFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDI 988 (1228)
T ss_pred HHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeEE
Confidence 4789999999999999998765555545455566777888899999999999999999988543221 221123345689
Q ss_pred EEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 020527 81 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 160 (325)
Q Consensus 81 ~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~ 160 (325)
+++||+|+||.+++.++|+|+||+|++|+.+||||||||||||.+.+|-++|.|++|.|.+||.|+++++.+.+|+++|.
T Consensus 989 ~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~l 1068 (1228)
T KOG0055|consen 989 EFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGL 1068 (1228)
T ss_pred EEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcce
Confidence 99999999999888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCCCE
Q 020527 161 VGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPAI 238 (325)
Q Consensus 161 v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p~l 238 (325)
|.|+|.||+.|++|||+||.. ..+.+++.++++.+.+++++..+|.||+|.++ +.+||||||||+|||||+++||+|
T Consensus 1069 VsQEP~LF~~TIrENI~YG~~-~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkI 1147 (1228)
T KOG0055|consen 1069 VSQEPVLFNGTIRENIAYGSE-EVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKI 1147 (1228)
T ss_pred eccCchhhcccHHHHHhccCC-CCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCe
Confidence 999999999999999999943 37889999999999999999999999999998 468999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHH
Q 020527 239 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVK 318 (325)
Q Consensus 239 lllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 318 (325)
|||||+||+||.++++.+.+.|++.. .|+|.|+|+|+++.++.||.|+|+++|+|+|.|+|++|+++++.|.++++
T Consensus 1148 LLLDEATSALDseSErvVQeALd~a~----~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~~~G~Y~~Lv~ 1223 (1228)
T KOG0055|consen 1148 LLLDEATSALDSESERVVQEALDRAM----EGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLAKRGIYFRLVQ 1223 (1228)
T ss_pred eeeeccchhhhhhhHHHHHHHHHHhh----cCCcEEEEecchhhhhcCCEEEEEECCEEEecccHHHHHhCCCchHHHhh
Confidence 99999999999999999999999985 48899999999999999999999999999999999999999999999998
Q ss_pred Hhh
Q 020527 319 RQT 321 (325)
Q Consensus 319 ~~~ 321 (325)
.|.
T Consensus 1224 ~q~ 1226 (1228)
T KOG0055|consen 1224 LQS 1226 (1228)
T ss_pred hcc
Confidence 764
No 10
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=4.1e-65 Score=525.73 Aligned_cols=306 Identities=43% Similarity=0.738 Sum_probs=274.0
Q ss_pred eeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEEE
Q 020527 3 VLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQF 82 (325)
Q Consensus 3 ~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 82 (325)
+++|++++..|.||+|.++++..|...+..|+..+...+..++++..+.+|+.++++.+++..... .....+..+.|++
T Consensus 403 l~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~-~~~~~~~~~~I~~ 481 (711)
T TIGR00958 403 LYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTG-TLAPLNLEGLIEF 481 (711)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC-CCCCCCCCCeEEE
Confidence 467899999999999999999999999999999999999999999999999999998876532111 1111122346999
Q ss_pred EEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEc
Q 020527 83 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG 162 (325)
Q Consensus 83 ~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~ 162 (325)
+||+|+|++++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+++...+|++|+|||
T Consensus 482 ~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~ 561 (711)
T TIGR00958 482 QDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVG 561 (711)
T ss_pred EEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEe
Confidence 99999998643357999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEE
Q 020527 163 QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILL 240 (325)
Q Consensus 163 Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~lll 240 (325)
|+|.+|++|++|||.++.+ ..+++++.++++.++++++++++|.|+++.+++ .+||||||||++||||++++|+|+|
T Consensus 562 Q~~~lF~gTIreNI~~g~~-~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILI 640 (711)
T TIGR00958 562 QEPVLFSGSVRENIAYGLT-DTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLI 640 (711)
T ss_pred cCccccccCHHHHHhcCCC-CCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999999853 456788999999999999999999999998874 5899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHH
Q 020527 241 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKL 316 (325)
Q Consensus 241 lDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~ 316 (325)
||||||+||+++++.+.+ .. . .+++|+|+|||+++.+..||+|++|++|+|++.|++++++++++.|+++
T Consensus 641 LDEpTSaLD~~te~~i~~-~~-~----~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~~~y~~l 710 (711)
T TIGR00958 641 LDEATSALDAECEQLLQE-SR-S----RASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYKHL 710 (711)
T ss_pred EEccccccCHHHHHHHHH-hh-c----cCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCCCchHhc
Confidence 999999999999998887 22 1 2478999999999999899999999999999999999999888888775
No 11
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=1.5e-64 Score=520.94 Aligned_cols=302 Identities=37% Similarity=0.579 Sum_probs=272.6
Q ss_pred EeeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEE
Q 020527 2 AVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQ 81 (325)
Q Consensus 2 ~~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 81 (325)
++++|++++..|.+|+|.++++..+...+..|+..+...+..++.+..+.+|+.++++.+++..............+.|+
T Consensus 386 il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~I~ 465 (694)
T TIGR03375 386 IVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTRFLHRPRLQGEIE 465 (694)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCccceEE
Confidence 45789999999999999999999999999999999999999999999999999999988765322111111111234699
Q ss_pred EEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 020527 82 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 161 (325)
Q Consensus 82 ~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v 161 (325)
++||+|+|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++...+|++|+||
T Consensus 466 ~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v 544 (694)
T TIGR03375 466 FRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYV 544 (694)
T ss_pred EEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEE
Confidence 99999999753 34699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEE
Q 020527 162 GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAIL 239 (325)
Q Consensus 162 ~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~ll 239 (325)
||++.+|++|++|||.++.+ ..+++++.++++.++++++++.+|.|+++.+++ .+||||||||++|||||+++|+++
T Consensus 545 ~Q~~~lf~~TI~eNi~~~~~-~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~il 623 (694)
T TIGR03375 545 PQDPRLFYGTLRDNIALGAP-YADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPIL 623 (694)
T ss_pred CCChhhhhhhHHHHHhCCCC-CCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999843 467888999999999999999999999998874 579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhc
Q 020527 240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK 309 (325)
Q Consensus 240 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 309 (325)
|||||||+||+++++.+.+.+.++. +++|+|+|||+++.+..||+|++|++|++++.|+++++++.
T Consensus 624 iLDE~Ts~LD~~te~~i~~~l~~~~----~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 624 LLDEPTSAMDNRSEERFKDRLKRWL----AGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHh----CCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 9999999999999999999999885 36899999999999999999999999999999999998754
No 12
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-64 Score=489.48 Aligned_cols=308 Identities=35% Similarity=0.545 Sum_probs=276.4
Q ss_pred HHHHhc-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccc-cCCcccEEEEE
Q 020527 7 GMSIMI-GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKL-QRLMGHVQFVN 84 (325)
Q Consensus 7 ~~~v~~-g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~ 84 (325)
++..+. |++|+...+.+++....++.|++.++..+|...++.++.+.++.+++.+++.......... ......++++|
T Consensus 246 g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~ 325 (559)
T COG4988 246 GFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLEN 325 (559)
T ss_pred HHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCceeeecc
Confidence 444555 8999999998999999999999999999999999999999999999988763321110011 11112355669
Q ss_pred EEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccC
Q 020527 85 ISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQE 164 (325)
Q Consensus 85 v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~ 164 (325)
+++.|++. +++++|+||++++|+.++|+|+||||||||+++|+|+.+|++|+|.+||.++.+.+...||++++||+|+
T Consensus 326 l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~ 403 (559)
T COG4988 326 LSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQN 403 (559)
T ss_pred eEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCC
Confidence 99999864 3799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEe
Q 020527 165 PQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLD 242 (325)
Q Consensus 165 ~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~llllD 242 (325)
|++|++|++||+.++. ...+++++.++++++++.++++. |.|+++.+++ ..|||||+|||++||||+++++++|+|
T Consensus 404 p~lf~gTireNi~l~~-~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llD 481 (559)
T COG4988 404 PYLFAGTIRENILLAR-PDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLD 481 (559)
T ss_pred CccccccHHHHhhccC-CcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEec
Confidence 9999999999999985 45778999999999999999999 9999998874 679999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHhhh
Q 020527 243 EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTE 322 (325)
Q Consensus 243 EPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 322 (325)
||||+||.++++.+.+.|.++.+ ++|+++|||++..+..||+|++|++|++++.|+++++..+++.|++++..|.+
T Consensus 482 EpTA~LD~etE~~i~~~l~~l~~----~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~~~q~~ 557 (559)
T COG4988 482 EPTAHLDAETEQIILQALQELAK----QKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQQEG 557 (559)
T ss_pred CCccCCCHhHHHHHHHHHHHHHh----CCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHHHHHHHhc
Confidence 99999999999999999999975 57999999999999999999999999999999999999999999999998764
No 13
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=8e-64 Score=515.50 Aligned_cols=313 Identities=40% Similarity=0.589 Sum_probs=283.0
Q ss_pred EeeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEE
Q 020527 2 AVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQ 81 (325)
Q Consensus 2 ~~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 81 (325)
++++|++++..|+||+|.++++..+...+..|+..+...+..++.+..+++|+.++++.+++.... .....+...+.|+
T Consensus 379 il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~-~~~~~~~~~~~i~ 457 (694)
T TIGR01846 379 LLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA-GLAALPELRGAIT 457 (694)
T ss_pred hHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC-CCCCCCCCCCeEE
Confidence 467899999999999999999999999999999999999999999999999999999887653221 1111112234699
Q ss_pred EEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 020527 82 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 161 (325)
Q Consensus 82 ~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v 161 (325)
++||+|+|++. .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++...+|++|+||
T Consensus 458 ~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v 536 (694)
T TIGR01846 458 FENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVV 536 (694)
T ss_pred EEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEE
Confidence 99999999743 24699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEE
Q 020527 162 GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAIL 239 (325)
Q Consensus 162 ~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~ll 239 (325)
||++.+|++|++||+.++. +..+++++.++++.+++.++++++|.|+++.++. .+||||||||++|||||+++|++|
T Consensus 537 ~q~~~lf~~ti~eNi~~~~-~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~il 615 (694)
T TIGR01846 537 LQENVLFSRSIRDNIALCN-PGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRIL 615 (694)
T ss_pred ccCCeehhhhHHHHHhcCC-CCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEE
Confidence 9999999999999999874 3466888999999999999999999999998864 689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHHH
Q 020527 240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKR 319 (325)
Q Consensus 240 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 319 (325)
|||||||+||+.+++.+.+.|+++. +++|+|++||+++.+..||+|++|++|++++.|++++++++++.|++++..
T Consensus 616 ilDEpts~LD~~~~~~i~~~l~~~~----~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~~~~y~~l~~~ 691 (694)
T TIGR01846 616 IFDEATSALDYESEALIMRNMREIC----RGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLYARLWQQ 691 (694)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHh----CCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHcCChHHHHHHh
Confidence 9999999999999999999999884 368999999999999889999999999999999999999999999999986
Q ss_pred hh
Q 020527 320 QT 321 (325)
Q Consensus 320 ~~ 321 (325)
|.
T Consensus 692 ~~ 693 (694)
T TIGR01846 692 QS 693 (694)
T ss_pred hc
Confidence 53
No 14
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=8.5e-64 Score=507.00 Aligned_cols=301 Identities=34% Similarity=0.489 Sum_probs=273.7
Q ss_pred HhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEEEEEEEEEC
Q 020527 10 IMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHY 89 (325)
Q Consensus 10 v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y 89 (325)
+..|.+|+|.++++..|...+..|+..+...+..+.++..+++|+.++++.++++.... ......+.|+++||+|+|
T Consensus 274 ~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~---~~~~~~~~i~~~~v~f~y 350 (592)
T PRK10790 274 SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGND---DRPLQSGRIDIDNVSFAY 350 (592)
T ss_pred HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCC---ccCCCCCeEEEEEEEEEe
Confidence 57899999999999999999999999999999999999999999999998764421111 111112359999999999
Q ss_pred CCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCcc
Q 020527 90 PSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ 169 (325)
Q Consensus 90 ~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~ 169 (325)
+++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++.+.+|++|+|+||+|.+|+
T Consensus 351 ~~~--~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~ 428 (592)
T PRK10790 351 RDD--NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLA 428 (592)
T ss_pred CCC--CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCcccc
Confidence 743 469999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCC
Q 020527 170 MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSA 247 (325)
Q Consensus 170 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~llllDEPts~ 247 (325)
+|++|||.++. ..+++++.++++.++++++++++|.|+++.++. .+||||||||++|||||+++|+|||||||||+
T Consensus 429 ~Ti~~NI~~~~--~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~ 506 (592)
T PRK10790 429 DTFLANVTLGR--DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATAN 506 (592)
T ss_pred chHHHHHHhCC--CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCccc
Confidence 99999999984 467888999999999999999999999998864 57999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHhh
Q 020527 248 LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQT 321 (325)
Q Consensus 248 LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 321 (325)
||+++++.+.+.++++.+ ++|+|+|||+++.+..||+|++|++|++++.|++++++++++.|+++++.+.
T Consensus 507 LD~~t~~~i~~~l~~~~~----~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~~~y~~l~~~~~ 576 (592)
T PRK10790 507 IDSGTEQAIQQALAAVRE----HTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQGRYWQMYQLQL 576 (592)
T ss_pred CCHHHHHHHHHHHHHHhC----CCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCHHHHHHHHHh
Confidence 999999999999998853 5799999999999999999999999999999999999999999999998654
No 15
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=2.1e-63 Score=503.68 Aligned_cols=311 Identities=38% Similarity=0.614 Sum_probs=278.0
Q ss_pred eeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEEE
Q 020527 3 VLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQF 82 (325)
Q Consensus 3 ~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 82 (325)
+++|+|++..|.+|+|.++++..++..+..|+..+...+..+..+..+.+|+.++++.+++..............+.|++
T Consensus 258 ~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~I~~ 337 (588)
T PRK13657 258 LVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDLGRVKGAVEF 337 (588)
T ss_pred HHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCcCCCCCeEEE
Confidence 56789999999999999999999999999999999999999999999999999998875442211111111112235999
Q ss_pred EEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEc
Q 020527 83 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG 162 (325)
Q Consensus 83 ~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~ 162 (325)
+||+|+|+++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++...+|++|+|+|
T Consensus 338 ~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~ 415 (588)
T PRK13657 338 DDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVF 415 (588)
T ss_pred EEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEe
Confidence 9999999753 36999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEE
Q 020527 163 QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILL 240 (325)
Q Consensus 163 Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~lll 240 (325)
|+|.+|++|++||+.++. +...++++..+++.+++++++.++|.|+++.++. .+||||||||++|||||+++|+++|
T Consensus 416 Q~~~lf~~Ti~~Ni~~~~-~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~ili 494 (588)
T PRK13657 416 QDAGLFNRSIEDNIRVGR-PDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILI 494 (588)
T ss_pred cCcccccccHHHHHhcCC-CCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999999999974 3456888999999999999999999999998764 5799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHh
Q 020527 241 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQ 320 (325)
Q Consensus 241 lDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 320 (325)
||||||+||+.+++.+.+.+.++. +++|+|+||||++.++.||+|++|++|++++.|++++++..++.|++++..+
T Consensus 495 LDEpts~LD~~t~~~i~~~l~~~~----~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~ 570 (588)
T PRK13657 495 LDEATSALDVETEAKVKAALDELM----KGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGRFAALLRAQ 570 (588)
T ss_pred EeCCccCCCHHHHHHHHHHHHHHh----cCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHCCChHHHHHHHh
Confidence 999999999999999999998874 3689999999999998999999999999999999999998888899988754
No 16
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=2.4e-63 Score=501.62 Aligned_cols=312 Identities=43% Similarity=0.677 Sum_probs=281.0
Q ss_pred EeeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEE
Q 020527 2 AVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQ 81 (325)
Q Consensus 2 ~~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 81 (325)
++++|++++..|.+|+|.++++..++..+..|+..+...+..++++..+.+|+.++++.+++..... .......+.|+
T Consensus 255 ~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~--~~~~~~~~~i~ 332 (571)
T TIGR02203 255 VLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGT--RAIERARGDVE 332 (571)
T ss_pred HHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC--CCCCCCCCeEE
Confidence 3567899999999999999999999999999999999999999999999999999998765532111 11111234699
Q ss_pred EEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 020527 82 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 161 (325)
Q Consensus 82 ~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v 161 (325)
++||+|+|++. +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++||.++.+++..++|++|+|+
T Consensus 333 ~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v 411 (571)
T TIGR02203 333 FRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALV 411 (571)
T ss_pred EEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEE
Confidence 99999999753 34799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEE
Q 020527 162 GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAIL 239 (325)
Q Consensus 162 ~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~ll 239 (325)
||+|.+|++|++|||.++.+...+++++.++++.+++++++.++|.|+++.+++ .+||||||||++||||++++|+++
T Consensus 412 ~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~il 491 (571)
T TIGR02203 412 SQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPIL 491 (571)
T ss_pred ccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999998533567888999999999999999999999998874 579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHHH
Q 020527 240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKR 319 (325)
Q Consensus 240 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 319 (325)
|||||||+||+.+++.+.+.|.++. +++|+|+|||+++.+..||+|++|++|++++.|+++++++.+..|++++..
T Consensus 492 lLDEpts~LD~~~~~~i~~~L~~~~----~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~~~~~~~~~~~ 567 (571)
T TIGR02203 492 ILDEATSALDNESERLVQAALERLM----QGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNGLYAQLHNM 567 (571)
T ss_pred EEeCccccCCHHHHHHHHHHHHHHh----CCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999884 368999999999999899999999999999999999999888889888775
Q ss_pred h
Q 020527 320 Q 320 (325)
Q Consensus 320 ~ 320 (325)
+
T Consensus 568 ~ 568 (571)
T TIGR02203 568 Q 568 (571)
T ss_pred h
Confidence 4
No 17
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.2e-63 Score=543.18 Aligned_cols=316 Identities=38% Similarity=0.598 Sum_probs=278.1
Q ss_pred EeeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccc-ccccc---ccCCc
Q 020527 2 AVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFL-SEGVK---LQRLM 77 (325)
Q Consensus 2 ~~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~-~~~~~---~~~~~ 77 (325)
++|+|++++..|.+|+|++++++.++.....++..+...+..++++..+++|++++++.+++.... ..... .....
T Consensus 1084 ~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~ 1163 (1466)
T PTZ00265 1084 AYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIK 1163 (1466)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCC
Confidence 468899999999999999998887765555567788889999999999999999999876532111 11111 11123
Q ss_pred ccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC-----------------------
Q 020527 78 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP----------------------- 134 (325)
Q Consensus 78 ~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~----------------------- 134 (325)
+.|+++||+|+|+++++.++|+|+||+|++|+++||+||||||||||+++|+|+|+|
T Consensus 1164 g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~ 1243 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQ 1243 (1466)
T ss_pred ceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccc
Confidence 469999999999864345799999999999999999999999999999999999998
Q ss_pred -------------------------------CCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCC
Q 020527 135 -------------------------------SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD 183 (325)
Q Consensus 135 -------------------------------~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~ 183 (325)
++|+|++||.++.+++...+|++||||||+|.||++||+|||.+|.+ .
T Consensus 1244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~-~ 1322 (1466)
T PTZ00265 1244 GDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKE-D 1322 (1466)
T ss_pred cccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCC-C
Confidence 69999999999999999999999999999999999999999999853 5
Q ss_pred CCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 020527 184 VKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLH 261 (325)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~ 261 (325)
..++++.++++.+++++++..+|.|++|.+++ .+||||||||++|||||+++|+|||||||||+||+++++.+.+.|.
T Consensus 1323 at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~ 1402 (1466)
T PTZ00265 1323 ATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIV 1402 (1466)
T ss_pred CCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHH
Confidence 67889999999999999999999999999984 5799999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCeEEEEEecCchHHHhcCEEEEEeC----CEEE-EEcChHHHhh-cCHHHHHHHHHh
Q 020527 262 ALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD----GRII-EVGNHAELLH-KGRLYAKLVKRQ 320 (325)
Q Consensus 262 ~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~----G~i~-~~g~~~~l~~-~~~~~~~~~~~~ 320 (325)
++.. .+++|+|+|||+++.++.||+|++|++ |+++ +.|+++++++ +++.|+++++.|
T Consensus 1403 ~~~~--~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1403 DIKD--KADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred HHhc--cCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHHHHhhc
Confidence 8842 137899999999999999999999999 9955 8999999998 588999999865
No 18
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=3.3e-63 Score=500.67 Aligned_cols=308 Identities=31% Similarity=0.532 Sum_probs=272.2
Q ss_pred eeehHHHHhcCCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEE
Q 020527 3 VLLGGMSIMIGQVSPEQLTKYVLYCEW-LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQ 81 (325)
Q Consensus 3 ~~~g~~~v~~g~it~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 81 (325)
+++|+++ ..|.+|+|.++++..|... +..|+..+...+..++++..+.+|+.++++.+++...+..... ....+.|+
T Consensus 263 ~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~~~~~~-~~~~~~i~ 340 (574)
T PRK11160 263 LWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFPTTSTA-AADQVSLT 340 (574)
T ss_pred HHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcccCC-CCCCCeEE
Confidence 4667787 4899999999998877544 4467788888899999999999999999988765321111111 11224699
Q ss_pred EEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 020527 82 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 161 (325)
Q Consensus 82 ~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v 161 (325)
++||+|+|+++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++...+|++|+|+
T Consensus 341 ~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 419 (574)
T PRK11160 341 LNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVV 419 (574)
T ss_pred EEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEE
Confidence 99999999753 24699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEE
Q 020527 162 GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAIL 239 (325)
Q Consensus 162 ~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~ll 239 (325)
||++.+|++|++||+.++.+ ..+++++.++++.+++++++++ |.|+++.+++ .+||||||||++||||++++|++|
T Consensus 420 ~Q~~~lf~~ti~~Ni~~~~~-~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRialARall~~~~il 497 (574)
T PRK11160 420 SQRVHLFSATLRDNLLLAAP-NASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLL 497 (574)
T ss_pred cccchhhcccHHHHhhcCCC-ccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999853 4678889999999999999999 9999999874 579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHHH
Q 020527 240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKR 319 (325)
Q Consensus 240 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 319 (325)
|||||||+||+.+++.+.+.+.++. +++|+|+|||+++.+..||+|++|++|++++.|++++++++++.|+++++.
T Consensus 498 ilDE~ts~lD~~t~~~i~~~l~~~~----~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~g~y~~l~~~ 573 (574)
T PRK11160 498 LLDEPTEGLDAETERQILELLAEHA----QNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQGRYYQLKQR 573 (574)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHc----CCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhcCcHHHHHHhh
Confidence 9999999999999999999999884 368999999999999889999999999999999999999999999998864
No 19
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=9.1e-65 Score=524.79 Aligned_cols=314 Identities=46% Similarity=0.713 Sum_probs=283.4
Q ss_pred EeeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcccc-ccccccCCcccE
Q 020527 2 AVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS-EGVKLQRLMGHV 80 (325)
Q Consensus 2 ~~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~i 80 (325)
.+|+|+.++..+..+.|+++..+..+..-...+......+..+..+.+++.++++.++..|+..... .........+.|
T Consensus 272 ~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~~~~~~g~i 351 (1228)
T KOG0055|consen 272 AFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGRVLSSIKGEI 351 (1228)
T ss_pred HHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCcccccCCcccccccce
Confidence 4799999999999999998655555444455677788899999999999999999999887643221 111222234579
Q ss_pred EEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 020527 81 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 160 (325)
Q Consensus 81 ~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~ 160 (325)
+++||+|+||.+++.++|+|+||.|++|+.+||||||||||||++++|.|+|.|++|+|++||.|+..++.+++|++||.
T Consensus 352 ef~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~igl 431 (1228)
T KOG0055|consen 352 EFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGL 431 (1228)
T ss_pred EEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCe
Confidence 99999999999877789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCE
Q 020527 161 VGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAI 238 (325)
Q Consensus 161 v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~l 238 (325)
|+|+|.||..||+|||.||. ++.+.+++.++.+.+...+++..+|.|+++..++ .+|||||||||||||||+++|+|
T Consensus 432 V~QePvlF~~tI~eNI~~G~-~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~I 510 (1228)
T KOG0055|consen 432 VSQEPVLFATTIRENIRYGK-PDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKI 510 (1228)
T ss_pred eeechhhhcccHHHHHhcCC-CcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCE
Confidence 99999999999999999994 4678899999999999999999999999999985 47999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHH
Q 020527 239 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVK 318 (325)
Q Consensus 239 lllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 318 (325)
||||||||+||+++++.+.+.|++.. .|+|.|+|+|+++.++.+|+|++|++|+|+|.|+|+|++..++.|.++++
T Consensus 511 LLLDEaTSaLD~~se~~Vq~ALd~~~----~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~G~Y~~lv~ 586 (1228)
T KOG0055|consen 511 LLLDEATSALDAESERVVQEALDKAS----KGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIALGGIYSSLVR 586 (1228)
T ss_pred EEecCcccccCHHHHHHHHHHHHHhh----cCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHhccchHHHHHH
Confidence 99999999999999999999999885 48899999999999999999999999999999999999999999999998
Q ss_pred Hh
Q 020527 319 RQ 320 (325)
Q Consensus 319 ~~ 320 (325)
.|
T Consensus 587 ~Q 588 (1228)
T KOG0055|consen 587 LQ 588 (1228)
T ss_pred HH
Confidence 76
No 20
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=9.5e-63 Score=496.99 Aligned_cols=311 Identities=33% Similarity=0.527 Sum_probs=278.9
Q ss_pred eeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEEE
Q 020527 3 VLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQF 82 (325)
Q Consensus 3 ~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 82 (325)
+++|+|++..|.+|+|.++++..|...+..|+..+...+..+..+..+.+|+.++++.+++..... ...+...+.|++
T Consensus 239 l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~--~~~~~~~~~I~~ 316 (569)
T PRK10789 239 IGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGS--EPVPEGRGELDV 316 (569)
T ss_pred HHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC--CCCCCCCCcEEE
Confidence 467889999999999999999999999999999999999999999999999999998765432111 111112235999
Q ss_pred EEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEc
Q 020527 83 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG 162 (325)
Q Consensus 83 ~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~ 162 (325)
+|++|+|+.. +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+||+++.+.+...+|++++|+|
T Consensus 317 ~~v~~~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 395 (569)
T PRK10789 317 NIRQFTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVS 395 (569)
T ss_pred EEEEEECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEc
Confidence 9999999753 246999999999999999999999999999999999999999999999999999888888999999999
Q ss_pred cCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEE
Q 020527 163 QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILL 240 (325)
Q Consensus 163 Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~lll 240 (325)
|++.+|++|++||+.++.+ ...++++..+++.+++++++.++|.|+++.++. .+||||||||++|||||+++|+++|
T Consensus 396 q~~~lf~~ti~~Ni~~~~~-~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~ill 474 (569)
T PRK10789 396 QTPFLFSDTVANNIALGRP-DATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILI 474 (569)
T ss_pred cCCeeccccHHHHHhcCCC-CCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999999743 456778888999999999999999999998764 5799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHh
Q 020527 241 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQ 320 (325)
Q Consensus 241 lDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 320 (325)
||||||+||+.+++.+.+.|+++. +++|+|++||+++.+..||+|++|++|++++.|++++++++++.|++++..|
T Consensus 475 lDEpts~LD~~~~~~i~~~l~~~~----~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~ 550 (569)
T PRK10789 475 LDDALSAVDGRTEHQILHNLRQWG----EGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQ 550 (569)
T ss_pred EECccccCCHHHHHHHHHHHHHHh----CCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHHh
Confidence 999999999999999999998874 3789999999999998899999999999999999999999888999999865
Q ss_pred h
Q 020527 321 T 321 (325)
Q Consensus 321 ~ 321 (325)
.
T Consensus 551 ~ 551 (569)
T PRK10789 551 Q 551 (569)
T ss_pred h
Confidence 3
No 21
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=1.4e-62 Score=496.64 Aligned_cols=313 Identities=44% Similarity=0.715 Sum_probs=278.7
Q ss_pred eeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcccccccc-ccCCcccEE
Q 020527 3 VLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVK-LQRLMGHVQ 81 (325)
Q Consensus 3 ~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~i~ 81 (325)
+++|++++..|.+|+|.++++..+...+..|+..+...+..+..+..+++|+.++++.+++......... ..+....|+
T Consensus 260 ~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 339 (576)
T TIGR02204 260 LWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIE 339 (576)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCccCCcCCCceEE
Confidence 4568999999999999999999999999999999999999999999999999999987654211111111 111223699
Q ss_pred EEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 020527 82 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 161 (325)
Q Consensus 82 ~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v 161 (325)
++||+|+|+++.++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++...+|++|+|+
T Consensus 340 ~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~ 419 (576)
T TIGR02204 340 FEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALV 419 (576)
T ss_pred EEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEE
Confidence 99999999753224699999999999999999999999999999999999999999999999999999988999999999
Q ss_pred ccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEE
Q 020527 162 GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAIL 239 (325)
Q Consensus 162 ~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~ll 239 (325)
||+|.+|++|++|||.++.+ ...++++.++++.+++.++++++|.|+++.+++ .+||||||||++||||++++|+++
T Consensus 420 ~Q~~~lf~~Ti~~Ni~~~~~-~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~il 498 (576)
T TIGR02204 420 PQDPVLFAASVMENIRYGRP-DATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPIL 498 (576)
T ss_pred ccCCccccccHHHHHhcCCC-CCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeE
Confidence 99999999999999999753 456788999999999999999999999988764 579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHHH
Q 020527 240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKR 319 (325)
Q Consensus 240 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 319 (325)
|||||||+||+.+++.+.+.++++. +++|+|+|||+++.+..||+|++|++|++++.|++++++.+...|++++..
T Consensus 499 ilDEpts~lD~~~~~~i~~~l~~~~----~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~~~~~~~l~~~ 574 (576)
T TIGR02204 499 LLDEATSALDAESEQLVQQALETLM----KGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGGLYARLARL 574 (576)
T ss_pred EEeCcccccCHHHHHHHHHHHHHHh----CCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHcCChHHHHHhh
Confidence 9999999999999999999999884 368999999999999889999999999999999999999988899998876
Q ss_pred h
Q 020527 320 Q 320 (325)
Q Consensus 320 ~ 320 (325)
|
T Consensus 575 ~ 575 (576)
T TIGR02204 575 Q 575 (576)
T ss_pred c
Confidence 5
No 22
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.9e-64 Score=432.14 Aligned_cols=217 Identities=35% Similarity=0.529 Sum_probs=190.8
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCC-CHHHHhcc
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL-DIRWLREK 157 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~-~~~~~r~~ 157 (325)
.|+++||+|+|++. .+|++||++|++||+++|+||||||||||||||++|.+|++|+|.++|.++... +...+|++
T Consensus 2 mi~i~~l~K~fg~~---~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGDK---EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCCe---EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 48999999999864 699999999999999999999999999999999999999999999999877432 56778999
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCC--CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 020527 158 IGFVGQEPQLL-QMDIKSNIMYGCP--KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 230 (325)
Q Consensus 158 i~~v~Q~~~l~-~~tv~enl~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 230 (325)
+|+|||+++|| .+||.||++++.. .... .+...+.++++++.+..+.+| .+|||||||||||||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP---------~qLSGGQqQRVAIAR 149 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP---------AQLSGGQQQRVAIAR 149 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc---------cccCcHHHHHHHHHH
Confidence 99999999999 5899999988631 1112 222344566666666666666 789999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhc
Q 020527 231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 309 (325)
Q Consensus 231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 309 (325)
||+.+|+++|+|||||+|||+...++++.++++++ .|.|.|+|||++.+++. ||||++|++|++++.|+|++++.+
T Consensus 150 ALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~---eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~ 226 (240)
T COG1126 150 ALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE---EGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226 (240)
T ss_pred HHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH---cCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999999986 48999999999999986 999999999999999999999976
Q ss_pred C
Q 020527 310 G 310 (325)
Q Consensus 310 ~ 310 (325)
.
T Consensus 227 p 227 (240)
T COG1126 227 P 227 (240)
T ss_pred C
Confidence 3
No 23
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=4.6e-62 Score=493.24 Aligned_cols=312 Identities=37% Similarity=0.596 Sum_probs=277.2
Q ss_pred EeeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEE
Q 020527 2 AVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQ 81 (325)
Q Consensus 2 ~~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 81 (325)
++++|++++..|++|+|.++++..+...+..|+..+...+..+..+..+.+|+.++++.+++..............+.++
T Consensus 257 v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~i~ 336 (585)
T TIGR01192 257 ILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAPELPNVKGAVE 336 (585)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccCCCCCCCCCeEE
Confidence 35679999999999999999999999999999999999999999999999999999987654221111111111223599
Q ss_pred EEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 020527 82 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 161 (325)
Q Consensus 82 ~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v 161 (325)
++||+|+|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++|+
T Consensus 337 ~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v 414 (585)
T TIGR01192 337 FRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATV 414 (585)
T ss_pred EEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEE
Confidence 99999999753 3589999999999999999999999999999999999999999999999999988888899999999
Q ss_pred ccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEE
Q 020527 162 GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAIL 239 (325)
Q Consensus 162 ~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~ll 239 (325)
||++.+|++|++||+.++.+ ...++++.++++.+++++++.++|.|+++..+. .+||||||||++|||||+++|++|
T Consensus 415 ~q~~~lf~~ti~~Ni~~~~~-~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~il 493 (585)
T TIGR01192 415 FQDAGLFNRSIRENIRLGRE-GATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPIL 493 (585)
T ss_pred ccCCccCcccHHHHHhcCCC-CCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999743 456778888899999999999999999987763 679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHHH
Q 020527 240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKR 319 (325)
Q Consensus 240 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 319 (325)
|||||||+||+.+++.+.+.|.++. +++|+|+|||+++.+..||+|++|++|++++.|++++++++++.|++++..
T Consensus 494 ilDEpts~LD~~~~~~i~~~l~~~~----~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~ 569 (585)
T TIGR01192 494 VLDEATSALDVETEARVKNAIDALR----KNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDGRFYKLLRR 569 (585)
T ss_pred EEECCccCCCHHHHHHHHHHHHHHh----CCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCCChHHHHHHh
Confidence 9999999999999999999998874 378999999999999889999999999999999999999999999999976
Q ss_pred h
Q 020527 320 Q 320 (325)
Q Consensus 320 ~ 320 (325)
+
T Consensus 570 ~ 570 (585)
T TIGR01192 570 S 570 (585)
T ss_pred C
Confidence 5
No 24
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-62 Score=469.85 Aligned_cols=308 Identities=38% Similarity=0.570 Sum_probs=276.0
Q ss_pred ehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEEEEE
Q 020527 5 LGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVN 84 (325)
Q Consensus 5 ~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 84 (325)
+|..-+..|.||+|+++.+..+..++..|+..++..+..+.++......++.+.+...+..+. ..+.....+.|+++|
T Consensus 279 l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~--~~~i~~~~~~I~F~d 356 (591)
T KOG0057|consen 279 LGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEA--ALPIELFGGSIEFDD 356 (591)
T ss_pred HHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhc--cCCcccCCCcEEEEe
Confidence 455557788999999999999999999999999999999999999888888765544332211 011122334699999
Q ss_pred EEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccC
Q 020527 85 ISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQE 164 (325)
Q Consensus 85 v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~ 164 (325)
|+++|+.+ +++|+++||+|++||.+||+|+|||||||++|+|.++++ ++|+|.+||+++++.+...+|+.|||||||
T Consensus 357 V~f~y~~k--~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd 433 (591)
T KOG0057|consen 357 VHFSYGPK--RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQD 433 (591)
T ss_pred eEEEeCCC--CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCc
Confidence 99999864 469999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred CcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEe
Q 020527 165 PQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLD 242 (325)
Q Consensus 165 ~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~llllD 242 (325)
..||+.||.+||.+|. ....++++.++++++++++.+.++|.||.|.+++ ..|||||||||+||||++++|+|+++|
T Consensus 434 ~~LFndTIl~NI~YGn-~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~D 512 (591)
T KOG0057|consen 434 SVLFNDTILYNIKYGN-PSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLD 512 (591)
T ss_pred ccccchhHHHHhhcCC-CCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEec
Confidence 9999999999999995 4678899999999999999999999999999985 579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHhhh
Q 020527 243 EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTE 322 (325)
Q Consensus 243 EPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 322 (325)
||||+||.++++.+++.+.+.. .++|+|+|.||++.+..||+|+++++|++.+.|++++++...+.|.++|..|..
T Consensus 513 EaTS~LD~~TE~~i~~~i~~~~----~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~~~~w~~~~~ 588 (591)
T KOG0057|consen 513 EATSALDSETEREILDMIMDVM----SGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLWTTQTS 588 (591)
T ss_pred CcccccchhhHHHHHHHHHHhc----CCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHHHHHhccccc
Confidence 9999999999999999998852 588999999999999999999999999999999999999988899999987643
No 25
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=4.7e-61 Score=482.47 Aligned_cols=298 Identities=33% Similarity=0.510 Sum_probs=266.6
Q ss_pred eeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEEE
Q 020527 3 VLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQF 82 (325)
Q Consensus 3 ~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 82 (325)
+++|++++..|.+|+|.++++..++..+..|+..+...+..++.+..+.+|+.++++.+++.... .......+.+++
T Consensus 243 ~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---~~~~~~~~~i~~ 319 (544)
T TIGR01842 243 LGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA---MPLPEPEGHLSV 319 (544)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC---CCCCCCCCeEEE
Confidence 56799999999999999999999999999999999999999999999999999999876543211 111112235999
Q ss_pred EEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEc
Q 020527 83 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG 162 (325)
Q Consensus 83 ~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~ 162 (325)
+|++|+|++. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++|+|
T Consensus 320 ~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~ 398 (544)
T TIGR01842 320 ENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLP 398 (544)
T ss_pred EEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEec
Confidence 9999999753 246999999999999999999999999999999999999999999999999999888888999999999
Q ss_pred cCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEE
Q 020527 163 QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILL 240 (325)
Q Consensus 163 Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~lll 240 (325)
|++.+|++|++||+.++. ...+++++.++++.++++++++++|.|+++.++. .+||||||||++||||++++|+++|
T Consensus 399 q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ili 477 (544)
T TIGR01842 399 QDVELFPGTVAENIARFG-ENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVV 477 (544)
T ss_pred CCcccccccHHHHHhccC-CCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999999998753 3356778888999999999999999999988764 6899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhh
Q 020527 241 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLH 308 (325)
Q Consensus 241 lDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 308 (325)
||||||+||+.+++.+.+.+.++.. +++|+|++||+++.+..||+|++|++|++++.|+++++.+
T Consensus 478 lDEpts~LD~~~~~~i~~~l~~~~~---~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 478 LDEPNSNLDEEGEQALANAIKALKA---RGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred EeCCccccCHHHHHHHHHHHHHHhh---CCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 9999999999999999999998853 3689999999999888899999999999999999998754
No 26
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.2e-62 Score=465.09 Aligned_cols=300 Identities=32% Similarity=0.493 Sum_probs=265.6
Q ss_pred cCCcCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEEEEEEEEECC
Q 020527 12 IGQVSPEQLTKYVLYCEWLIYATWRMV-DNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYP 90 (325)
Q Consensus 12 ~g~it~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~ 90 (325)
.|..+....+++++.+...+.++..+. ..+.+..+...++.|+.++.+.+++..++.... .... ..++++||+|+|+
T Consensus 270 ~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~~~~~-~~~~-~~l~~~~vsF~y~ 347 (573)
T COG4987 270 AGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFPDEQT-ATTG-QALELRNVSFTYP 347 (573)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCCcccc-CCcc-ceeeeccceeecC
Confidence 566665555556665556666666666 666788999999999999999988765441111 1111 1599999999998
Q ss_pred CCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccc
Q 020527 91 SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQM 170 (325)
Q Consensus 91 ~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ 170 (325)
++ ..++|+|+||++++||.+||+|+||||||||+++|+|.++|++|+|.++|.++..++.+.+|+.+++++|.+++|+.
T Consensus 348 ~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~ 426 (573)
T COG4987 348 GQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSG 426 (573)
T ss_pred CC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHH
Confidence 75 45799999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred cHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCC
Q 020527 171 DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSAL 248 (325)
Q Consensus 171 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~llllDEPts~L 248 (325)
|++||+.++. ++.+++++++++++++++++++..|.|+++++++ ..||||||||++|||+|++|.+++||||||.||
T Consensus 427 Tlr~NL~lA~-~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegL 505 (573)
T COG4987 427 TLRDNLRLAN-PDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGL 505 (573)
T ss_pred HHHHHHhhcC-CCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccC
Confidence 9999999984 4688999999999999999999999999999984 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHHH
Q 020527 249 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKR 319 (325)
Q Consensus 249 D~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 319 (325)
|+.+++++++.+.+.. +|+|+|+|||++..++.||||++|++|+++++|++.+++.+++.|+++++.
T Consensus 506 D~~TE~~vL~ll~~~~----~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~~g~~~~l~q~ 572 (573)
T COG4987 506 DPITERQVLALLFEHA----EGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANNGRYKRLYQL 572 (573)
T ss_pred ChhhHHHHHHHHHHHh----cCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhccccHHHHHhcc
Confidence 9999999999998775 488999999999999999999999999999999999999999999998863
No 27
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-62 Score=462.31 Aligned_cols=311 Identities=38% Similarity=0.569 Sum_probs=286.1
Q ss_pred eehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEEEE
Q 020527 4 LLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFV 83 (325)
Q Consensus 4 ~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 83 (325)
.+++|+|..+..|+|+++.|..|..++..|+.-++..+..++++....++++++++.+++..+.+...+.....+.|+++
T Consensus 462 ll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G~i~fs 541 (790)
T KOG0056|consen 462 LLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFS 541 (790)
T ss_pred heeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccccCCeEEEE
Confidence 45678888999999999999999999999999999999999999999999999999888755544333333345679999
Q ss_pred EEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEcc
Q 020527 84 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQ 163 (325)
Q Consensus 84 ~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q 163 (325)
||+|.|... +++|+||||++.||+.+|++||||+||||++|+|.++++.++|.|.+||+|+.......+|++||.|||
T Consensus 542 nvtF~Y~p~--k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQ 619 (790)
T KOG0056|consen 542 NVTFAYDPG--KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQ 619 (790)
T ss_pred EeEEecCCC--CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccC
Confidence 999999753 689999999999999999999999999999999999999999999999999998888899999999999
Q ss_pred CCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEE
Q 020527 164 EPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLL 241 (325)
Q Consensus 164 ~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~llll 241 (325)
|..||+.|+..||.|+. +...++++.++.+.+++++.+-.+|.|+.+.+++ -.|||||||||+|||+++++|.+++|
T Consensus 620 DtvLFNdTI~yNIryak-~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlL 698 (790)
T KOG0056|consen 620 DTVLFNDTILYNIRYAK-PSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILL 698 (790)
T ss_pred cceeecceeeeheeecC-CCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEE
Confidence 99999999999999995 4677889999999999999999999999999986 46999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhc-CHHHHHHHHHh
Q 020527 242 DEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK-GRLYAKLVKRQ 320 (325)
Q Consensus 242 DEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~ 320 (325)
||+||+||..+++.|...|.+++ .++|.|+|.|+++.+-.||.|+++++|+|+|.|.+++++.. .+.|.+||+.|
T Consensus 699 DEATSALDT~tER~IQaaL~rlc----a~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~q 774 (790)
T KOG0056|consen 699 DEATSALDTNTERAIQAALARLC----ANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQAQ 774 (790)
T ss_pred cchhhhcCCccHHHHHHHHHHHh----cCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHHHHH
Confidence 99999999999999999999996 47799999999999999999999999999999999999986 78999999765
Q ss_pred h
Q 020527 321 T 321 (325)
Q Consensus 321 ~ 321 (325)
+
T Consensus 775 q 775 (790)
T KOG0056|consen 775 Q 775 (790)
T ss_pred H
Confidence 4
No 28
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2.7e-60 Score=520.87 Aligned_cols=308 Identities=29% Similarity=0.426 Sum_probs=275.6
Q ss_pred ehHHHHh-cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccc-cc--cccccCCcccE
Q 020527 5 LGGMSIM-IGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFL-SE--GVKLQRLMGHV 80 (325)
Q Consensus 5 ~g~~~v~-~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~-~~--~~~~~~~~~~i 80 (325)
++++.+. .|.+++|.+.+++.|...+..|+..++..+..+..+..+++|+.++++.+++.... .. ....++..+.|
T Consensus 1206 ~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I 1285 (1522)
T TIGR00957 1206 AALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRV 1285 (1522)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcE
Confidence 4455554 58899999999999999999999999999999999999999999999877653211 11 11112344579
Q ss_pred EEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 020527 81 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 160 (325)
Q Consensus 81 ~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~ 160 (325)
+++||+++|+.+ ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+.+++...+|++|++
T Consensus 1286 ~f~nVsf~Y~~~-~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~i 1364 (1522)
T TIGR00957 1286 EFRNYCLRYRED-LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITI 1364 (1522)
T ss_pred EEEEEEEEeCCC-CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeE
Confidence 999999999754 2469999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCE
Q 020527 161 VGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAI 238 (325)
Q Consensus 161 v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~l 238 (325)
|||+|.+|++||+|||... ...+++++.++++.+++++++.++|.|+++.+++ .+||||||||+||||||+++|+|
T Consensus 1365 VpQdp~LF~gTIr~NLdp~--~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1442 (1522)
T TIGR00957 1365 IPQDPVLFSGSLRMNLDPF--SQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKI 1442 (1522)
T ss_pred ECCCCcccCccHHHHcCcc--cCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCE
Confidence 9999999999999999732 1466888999999999999999999999998875 68999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHH
Q 020527 239 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVK 318 (325)
Q Consensus 239 lllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 318 (325)
||||||||+||+++++.+.+.|++.. +++|+|+|+|+++.+..||||++|++|+|++.|+|++++++++.|+++++
T Consensus 1443 LiLDEaTSalD~~Te~~Iq~~l~~~~----~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~~~~f~~l~~ 1518 (1522)
T TIGR00957 1443 LVLDEATAAVDLETDNLIQSTIRTQF----EDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQRGIFYSMAK 1518 (1522)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHc----CCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHH
Confidence 99999999999999999999998874 46899999999999999999999999999999999999998899999987
Q ss_pred H
Q 020527 319 R 319 (325)
Q Consensus 319 ~ 319 (325)
+
T Consensus 1519 ~ 1519 (1522)
T TIGR00957 1519 D 1519 (1522)
T ss_pred H
Confidence 6
No 29
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=2.4e-60 Score=475.85 Aligned_cols=270 Identities=31% Similarity=0.454 Sum_probs=241.4
Q ss_pred eeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccc--cccccCCcccE
Q 020527 3 VLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSE--GVKLQRLMGHV 80 (325)
Q Consensus 3 ~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~i 80 (325)
+++|++++..|.+|+|.++++..+...+..|+..+...+..++.+..+.+|+.++++.+++...... .....+..+.|
T Consensus 256 ~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~I 335 (529)
T TIGR02868 256 LWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVPAAGALGLGKPTL 335 (529)
T ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCcccCCCCceE
Confidence 4678899999999999999999999999999999999999999999999999999987664221111 10111122359
Q ss_pred EEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 020527 81 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 160 (325)
Q Consensus 81 ~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~ 160 (325)
+++||+|+|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.++ ..++|++|+|
T Consensus 336 ~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~ 412 (529)
T TIGR02868 336 ELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISV 412 (529)
T ss_pred EEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEE
Confidence 999999999753 3699999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred EccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCE
Q 020527 161 VGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAI 238 (325)
Q Consensus 161 v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~l 238 (325)
|||+|.+|++|++|||.++. +..+++++.++++.+++++++.++|.|+++.+++ .+||||||||++|||||+++|+|
T Consensus 413 V~Q~~~lF~~TI~eNI~~g~-~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~i 491 (529)
T TIGR02868 413 FAQDAHLFDTTVRDNLRLGR-PDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPI 491 (529)
T ss_pred EccCcccccccHHHHHhccC-CCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999984 3567888999999999999999999999999874 57999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCc
Q 020527 239 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL 280 (325)
Q Consensus 239 lllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~ 280 (325)
||||||||+||+++++.+.+.+.++. +++|+|+|||++
T Consensus 492 liLDE~TSaLD~~te~~I~~~l~~~~----~~~TvIiItHrl 529 (529)
T TIGR02868 492 LLLDEPTEHLDAGTESELLEDLLAAL----SGKTVVVITHHL 529 (529)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhc----CCCEEEEEecCC
Confidence 99999999999999999999998773 478999999985
No 30
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.4e-61 Score=433.54 Aligned_cols=221 Identities=35% Similarity=0.540 Sum_probs=195.3
Q ss_pred cEEEEEEEEECCCC--CCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCH---HH
Q 020527 79 HVQFVNISFHYPSR--PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI---RW 153 (325)
Q Consensus 79 ~i~~~~v~~~y~~~--~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~---~~ 153 (325)
+|++++|+|.|+.+ ....+|+||||+|++||++||+|+||||||||+|++.+|..|++|+|.++|+++..++. ..
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 38999999999762 12469999999999999999999999999999999999999999999999999887764 45
Q ss_pred HhcceEEEccCCcCc-cccHHHHHhcCCCC-----CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 020527 154 LREKIGFVGQEPQLL-QMDIKSNIMYGCPK-----DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 227 (325)
Q Consensus 154 ~r~~i~~v~Q~~~l~-~~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~ 227 (325)
.|++|||+||+++|+ +.||++|++|+..- .....++.+.++.+++.+..+++| .+|||||||||+
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP---------~qLSGGQKQRVa 151 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP---------AQLSGGQKQRVA 151 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc---------hhcCcchhhHHH
Confidence 688999999999999 58999999997421 112344556667777776666666 789999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHH
Q 020527 228 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL 306 (325)
Q Consensus 228 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l 306 (325)
|||||+.+|+|||.|||||+|||++.+.|+++|+++.++ .|.||++|||.|+.++. ||||.+|++|++++.|+..++
T Consensus 152 IARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~--lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~v 229 (339)
T COG1135 152 IARALANNPKILLCDEATSALDPETTQSILELLKDINRE--LGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229 (339)
T ss_pred HHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHH--cCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHh
Confidence 999999999999999999999999999999999999875 69999999999999986 999999999999999999999
Q ss_pred hhcC
Q 020527 307 LHKG 310 (325)
Q Consensus 307 ~~~~ 310 (325)
+.++
T Consensus 230 F~~P 233 (339)
T COG1135 230 FANP 233 (339)
T ss_pred hcCc
Confidence 8764
No 31
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=8.5e-60 Score=447.85 Aligned_cols=300 Identities=33% Similarity=0.515 Sum_probs=273.7
Q ss_pred EeeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEE
Q 020527 2 AVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQ 81 (325)
Q Consensus 2 ~~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 81 (325)
++.+|+|+|++|++|.|.++|-....+....|+...+..|..+..+..+++|+.+++...|..... .+.+...+.+.
T Consensus 260 iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~---m~LP~P~g~L~ 336 (580)
T COG4618 260 VLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAER---MPLPAPQGALS 336 (580)
T ss_pred HHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCC---CCCCCCCceee
Confidence 456899999999999999999988999999999999999999999999999999999987764321 22233345799
Q ss_pred EEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 020527 82 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 161 (325)
Q Consensus 82 ~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v 161 (325)
++++++.-++. ++++++++||++.+||.++||||||||||||.|+|.|..+|.+|.|++||-++.+++.+++-++|||+
T Consensus 337 Ve~l~~~PPg~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYL 415 (580)
T COG4618 337 VERLTAAPPGQ-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYL 415 (580)
T ss_pred EeeeeecCCCC-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcC
Confidence 99999976654 47899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEE
Q 020527 162 GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAIL 239 (325)
Q Consensus 162 ~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~ll 239 (325)
||+..||++||.|||+-. ..+.+.+.+.++.+.+++++++-++|.||+|.+++ ..||||||||++|||||..+|.++
T Consensus 416 PQdVeLF~GTIaeNIaRf-~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lv 494 (580)
T COG4618 416 PQDVELFDGTIAENIARF-GEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLV 494 (580)
T ss_pred cccceecCCcHHHHHHhc-cccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEE
Confidence 999999999999999632 23566788999999999999999999999999985 579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhc
Q 020527 240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK 309 (325)
Q Consensus 240 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 309 (325)
+||||-|+||.+.+..+.+.|.+.++ +|.|+|+|||+++.+..+|+|++|++|++..+|+.++++.+
T Consensus 495 VLDEPNsNLD~~GE~AL~~Ai~~~k~---rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 495 VLDEPNSNLDSEGEAALAAAILAAKA---RGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred EecCCCCCcchhHHHHHHHHHHHHHH---cCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 99999999999999999999999975 48899999999999999999999999999999999998753
No 32
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=5.6e-59 Score=509.81 Aligned_cols=293 Identities=27% Similarity=0.419 Sum_probs=260.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccc-cc--cccccCCcccEEEEEEEEECCCCCCCCce
Q 020527 22 KYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFL-SE--GVKLQRLMGHVQFVNISFHYPSRPTVPIL 98 (325)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~-~~--~~~~~~~~~~i~~~~v~~~y~~~~~~~iL 98 (325)
.++.|...+..++..+...+..+..+..+++|+.++++.+++.... .. ..+.++..+.|+++||+|+|+.. .+++|
T Consensus 1174 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL 1252 (1495)
T PLN03232 1174 LLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVL 1252 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCccc
Confidence 3566777788888889999999999999999999999887664321 11 11112334569999999999643 24699
Q ss_pred eeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhc
Q 020527 99 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMY 178 (325)
Q Consensus 99 ~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~ 178 (325)
+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+.+++...+|++|+||||+|.+|++|++|||.+
T Consensus 1253 ~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~ 1332 (1495)
T PLN03232 1253 HGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDP 1332 (1495)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHH
Q 020527 179 GCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 256 (325)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i 256 (325)
+. ..+++++.++++.+++.++++.+|.|+++.+++ .+||||||||++|||||+++|+|||||||||+||+++++.+
T Consensus 1333 ~~--~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~I 1410 (1495)
T PLN03232 1333 FS--EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLI 1410 (1495)
T ss_pred CC--CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHH
Confidence 63 467888999999999999999999999998874 58999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcC-HHHHHHHHHhh
Q 020527 257 KGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG-RLYAKLVKRQT 321 (325)
Q Consensus 257 ~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~-~~~~~~~~~~~ 321 (325)
.+.|++.. +++|+|+|+|+++.+..||||++|++|++++.|+|+++++++ +.|+++++.+.
T Consensus 1411 q~~L~~~~----~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~ 1472 (1495)
T PLN03232 1411 QRTIREEF----KSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTG 1472 (1495)
T ss_pred HHHHHHHc----CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 99998874 368999999999999999999999999999999999999876 48999987643
No 33
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=4.7e-59 Score=466.57 Aligned_cols=281 Identities=36% Similarity=0.551 Sum_probs=250.4
Q ss_pred eehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEEEE
Q 020527 4 LLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFV 83 (325)
Q Consensus 4 ~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 83 (325)
+++++.++.|.+|+|.++++..+...+..|+..+...+..++.+..+.+|+.++++.+++..... ... ....+.|+++
T Consensus 247 ~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~-~~~-~~~~~~i~~~ 324 (529)
T TIGR02857 247 VYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKA-PVT-AAPAPSLEFS 324 (529)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc-CCC-CCCCCeEEEE
Confidence 45677888999999999999999999999999999999999999999999999998654321111 111 1112369999
Q ss_pred EEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEcc
Q 020527 84 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQ 163 (325)
Q Consensus 84 ~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q 163 (325)
||+|+|+++ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+||.++.+++..++|++|+||||
T Consensus 325 ~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q 403 (529)
T TIGR02857 325 GLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQ 403 (529)
T ss_pred EEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcC
Confidence 999999764 2469999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEE
Q 020527 164 EPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLL 241 (325)
Q Consensus 164 ~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~llll 241 (325)
++.+|++|++||+.++.+ ...++++.++++.++++++++++|.|+++.+++ .+||||||||++||||++++|+++||
T Consensus 404 ~~~lf~~ti~~Ni~~~~~-~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ilil 482 (529)
T TIGR02857 404 HPFLFAGTIAENIRLARP-DASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLL 482 (529)
T ss_pred CCcccCcCHHHHHhccCC-CCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999743 456788999999999999999999999998874 67999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEE
Q 020527 242 DEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 292 (325)
Q Consensus 242 DEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l 292 (325)
|||||+||+.+++.+.+.+.++. +++|+|+|||+++.++.||+|++|
T Consensus 483 DE~ts~lD~~~~~~i~~~l~~~~----~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 483 DEPTAHLDAETEALVTEALRALA----QGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred eCcccccCHHHHHHHHHHHHHhc----CCCEEEEEecCHHHHHhCCEEEeC
Confidence 99999999999999999999874 378999999999999889999875
No 34
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.2e-58 Score=508.24 Aligned_cols=295 Identities=29% Similarity=0.437 Sum_probs=256.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccc-cc--cccccCCcccEEEEEEEEECCCC
Q 020527 16 SPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFL-SE--GVKLQRLMGHVQFVNISFHYPSR 92 (325)
Q Consensus 16 t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~-~~--~~~~~~~~~~i~~~~v~~~y~~~ 92 (325)
++|.+++ |...+..++..+...+..+..+..+++|+.++++.+++.... .. ....++..+.|+++||+|+|++.
T Consensus 1174 ~~G~~ls---~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~ 1250 (1622)
T PLN03130 1174 TMGLLLS---YALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE 1250 (1622)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC
Confidence 4444444 444555556666667778899999999999999887664211 11 11112334579999999999643
Q ss_pred CCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccH
Q 020527 93 PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDI 172 (325)
Q Consensus 93 ~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv 172 (325)
.+++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+.+++..++|++|++|||+|.+|++||
T Consensus 1251 -~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTI 1329 (1622)
T PLN03130 1251 -LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTV 1329 (1622)
T ss_pred -CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccH
Confidence 2469999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCH
Q 020527 173 KSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 250 (325)
Q Consensus 173 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~ 250 (325)
+|||.++. ..+++++.++++.+++++++..+|.|+++.+++ .+||||||||+||||||+++|+|||||||||+||+
T Consensus 1330 reNLd~~~--~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~ 1407 (1622)
T PLN03130 1330 RFNLDPFN--EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDV 1407 (1622)
T ss_pred HHHhCcCC--CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCH
Confidence 99998763 456888999999999999999999999999875 58999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhc-CHHHHHHHHHh
Q 020527 251 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK-GRLYAKLVKRQ 320 (325)
Q Consensus 251 ~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~ 320 (325)
++++.+.+.|++.. +++|+|+|+|+++.+..||||++|++|+|++.|+|++++++ ++.|+++++..
T Consensus 1408 ~Te~~Iq~~I~~~~----~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~ 1474 (1622)
T PLN03130 1408 RTDALIQKTIREEF----KSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQST 1474 (1622)
T ss_pred HHHHHHHHHHHHHC----CCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHc
Confidence 99999999999874 37899999999999999999999999999999999999986 58899988754
No 35
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=4.9e-58 Score=502.52 Aligned_cols=302 Identities=24% Similarity=0.359 Sum_probs=266.2
Q ss_pred cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccc------------------------
Q 020527 12 IGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFL------------------------ 67 (325)
Q Consensus 12 ~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~------------------------ 67 (325)
.+.+++|.+.+++.|...+..++..++..+..+..+..+++|+.++++..+++..+
T Consensus 1211 ~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1290 (1560)
T PTZ00243 1211 ATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVV 1290 (1560)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccc
Confidence 45688998888888889999999999999999999999999999999754321100
Q ss_pred --cc-cc---cccCCcccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEE
Q 020527 68 --SE-GV---KLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 141 (325)
Q Consensus 68 --~~-~~---~~~~~~~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i 141 (325)
+. .. +.++..+.|+++||+|+|++. ..++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.+
T Consensus 1291 ~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~I 1369 (1560)
T PTZ00243 1291 IEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRV 1369 (1560)
T ss_pred cccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 00 00 001123469999999999753 246999999999999999999999999999999999999999999999
Q ss_pred CCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCC
Q 020527 142 DGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLS 219 (325)
Q Consensus 142 ~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LS 219 (325)
||.|+.+++..++|++|+||||+|.+|++||+|||... ...++++++++++.+++++++..+|.|+++.+++ .+||
T Consensus 1370 DG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~--~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLS 1447 (1560)
T PTZ00243 1370 NGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPF--LEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYS 1447 (1560)
T ss_pred CCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcc--cCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCC
Confidence 99999999999999999999999999999999999764 2466889999999999999999999999998874 6899
Q ss_pred hHHHHHHHHHHHHcCC-CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEE
Q 020527 220 GGQKQRIAIARAILRD-PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRII 298 (325)
Q Consensus 220 gGq~QRv~iAral~~~-p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~ 298 (325)
||||||+||||||+++ |+|||||||||+||+++++.+.+.|++.. +++|+|+|+|+++.+..||+|++|++|+|+
T Consensus 1448 gGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~----~~~TvI~IAHRl~ti~~~DrIlVLd~G~Vv 1523 (1560)
T PTZ00243 1448 VGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF----SAYTVITIAHRLHTVAQYDKIIVMDHGAVA 1523 (1560)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC----CCCEEEEEeccHHHHHhCCEEEEEECCEEE
Confidence 9999999999999995 89999999999999999999999998874 368999999999999999999999999999
Q ss_pred EEcChHHHhhc-CHHHHHHHHHh
Q 020527 299 EVGNHAELLHK-GRLYAKLVKRQ 320 (325)
Q Consensus 299 ~~g~~~~l~~~-~~~~~~~~~~~ 320 (325)
+.|+|++++.+ ++.|+++++.+
T Consensus 1524 E~Gt~~eLl~~~~~~f~~l~~~~ 1546 (1560)
T PTZ00243 1524 EMGSPRELVMNRQSIFHSMVEAL 1546 (1560)
T ss_pred EECCHHHHHhCCCCHHHHHHHHh
Confidence 99999999974 78899998764
No 36
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-59 Score=414.19 Aligned_cols=217 Identities=34% Similarity=0.539 Sum_probs=193.7
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
+|+++||||+|++ +.+++|+||+|++||+++++|||||||||+||+|.+|++|++|+|++||+++.+++..++|++|
T Consensus 1 MI~~~nvsk~y~~---~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~I 77 (309)
T COG1125 1 MIEFENVSKRYGN---KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKI 77 (309)
T ss_pred CceeeeeehhcCC---ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhh
Confidence 3899999999985 4699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCcCc-cccHHHHHhcCC-----CCCCCHHHHHHHHHHcCHH--HHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 020527 159 GFVGQEPQLL-QMDIKSNIMYGC-----PKDVKNEDIEWAAKQAYVH--EFILSLPCGYETLVDDDLLSGGQKQRIAIAR 230 (325)
Q Consensus 159 ~~v~Q~~~l~-~~tv~enl~~~~-----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 230 (325)
|||-|...|| ++||.|||++-. .+...++++.+.++.++++ ++.+++| ++|||||+|||.+||
T Consensus 78 GYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP---------~eLSGGQQQRVGv~R 148 (309)
T COG1125 78 GYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP---------HELSGGQQQRVGVAR 148 (309)
T ss_pred hhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc---------hhcCcchhhHHHHHH
Confidence 9999999999 589999997631 1111233455566666664 4666666 689999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhhc
Q 020527 231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 309 (325)
Q Consensus 231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~ 309 (325)
||+.+|+++|+||||++|||.++.++.+.+.+++++ -|+|||+||||++++- .+|||++|++|+++..++|++++.+
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~--l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~ 226 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKE--LGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHH--hCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhC
Confidence 999999999999999999999999999999999875 5899999999999985 5999999999999999999999876
No 37
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=2e-59 Score=421.53 Aligned_cols=224 Identities=30% Similarity=0.500 Sum_probs=198.5
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.++++|++++|+++ ++++|+||+|++||+++|+||||||||||||+|+|+++|.+|+|+++|+++.+++.+++.+++
T Consensus 2 ~L~~~~ls~~y~~~---~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYGGK---PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEECCe---eEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 48999999999854 699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCcC-ccccHHHHHhcCCCCCC---------CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 020527 159 GFVGQEPQL-LQMDIKSNIMYGCPKDV---------KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 228 (325)
Q Consensus 159 ~~v~Q~~~l-~~~tv~enl~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 228 (325)
|||||.+.. +..||+|-+.+|+.++. +.+.+.++++..++.++.++.- .+|||||||||.|
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~---------~~LSGGerQrv~i 149 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV---------DELSGGERQRVLI 149 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc---------cccChhHHHHHHH
Confidence 999999755 57899999999864321 1224666788888877766643 5799999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHh
Q 020527 229 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELL 307 (325)
Q Consensus 229 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~ 307 (325)
||||+++|++|||||||++||..++.+++++++++.++ +|+|+|+|+||++.+. .||++++|++|+++..|+|++++
T Consensus 150 ArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~--~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 150 ARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNRE--KGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999999864 6899999999999885 59999999999999999999998
Q ss_pred hcCHHHHHHH
Q 020527 308 HKGRLYAKLV 317 (325)
Q Consensus 308 ~~~~~~~~~~ 317 (325)
+++ ..++.|
T Consensus 228 T~e-~l~~Vy 236 (258)
T COG1120 228 TEE-NLREVY 236 (258)
T ss_pred CHH-HHHHHh
Confidence 864 334443
No 38
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=5.2e-58 Score=499.16 Aligned_cols=316 Identities=37% Similarity=0.630 Sum_probs=269.3
Q ss_pred EeeehHHHHhcC--------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccc
Q 020527 2 AVLLGGMSIMIG--------QVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKL 73 (325)
Q Consensus 2 ~~~~g~~~v~~g--------~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 73 (325)
++|+|++++..| .+|+|.++++..+.......+..+...+..++.+..+++|++++++.+++..........
T Consensus 298 ~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~~~~~~~ 377 (1466)
T PTZ00265 298 GFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVENNDDGKKL 377 (1466)
T ss_pred HHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCccC
Confidence 468899999986 589999887776655545555667778889999999999999999887653221111111
Q ss_pred cCCcccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEE-CCEeCCCCCHH
Q 020527 74 QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI-DGFPLTDLDIR 152 (325)
Q Consensus 74 ~~~~~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i-~g~~i~~~~~~ 152 (325)
+ ....|+++||+|+|+.+.+.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++ +|.++..++..
T Consensus 378 ~-~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~ 456 (1466)
T PTZ00265 378 K-DIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLK 456 (1466)
T ss_pred C-CCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHH
Confidence 1 123699999999998543346999999999999999999999999999999999999999999999 57898888888
Q ss_pred HHhcceEEEccCCcCccccHHHHHhcCCCC--------------------------------------------------
Q 020527 153 WLREKIGFVGQEPQLLQMDIKSNIMYGCPK-------------------------------------------------- 182 (325)
Q Consensus 153 ~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~-------------------------------------------------- 182 (325)
++|++||||||+|.+|+.||+|||.++...
T Consensus 457 ~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 536 (1466)
T PTZ00265 457 WWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIE 536 (1466)
T ss_pred HHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhh
Confidence 899999999999999999999999986310
Q ss_pred ------CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHH
Q 020527 183 ------DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 254 (325)
Q Consensus 183 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~ 254 (325)
...++++.++++.+++++++.++|.++++.++. .+||||||||++|||||+++|+|||||||||+||+.++.
T Consensus 537 ~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~ 616 (1466)
T PTZ00265 537 MRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEY 616 (1466)
T ss_pred cccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHH
Confidence 123467788899999999999999999998874 689999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCC---------------------------------------
Q 020527 255 YVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDG--------------------------------------- 295 (325)
Q Consensus 255 ~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G--------------------------------------- 295 (325)
.+.+.|+++.+. .|+|+|+|||+++.++.||+|++|++|
T Consensus 617 ~i~~~L~~~~~~--~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1466)
T PTZ00265 617 LVQKTINNLKGN--ENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNNN 694 (1466)
T ss_pred HHHHHHHHHhhc--CCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccccccccccccccccccccccccccc
Confidence 999999998642 478999999999999889999999986
Q ss_pred --------EEEEEcChHHHhh-cCHHHHHHHHHh
Q 020527 296 --------RIIEVGNHAELLH-KGRLYAKLVKRQ 320 (325)
Q Consensus 296 --------~i~~~g~~~~l~~-~~~~~~~~~~~~ 320 (325)
+|++.|++++++. ..+.|+.+++.|
T Consensus 695 ~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q 728 (1466)
T PTZ00265 695 NKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQ 728 (1466)
T ss_pred cccccCCceeEeeCCHHHHHhccCCcHHHHHhhh
Confidence 5999999999997 588999998765
No 39
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-58 Score=430.94 Aligned_cols=307 Identities=42% Similarity=0.619 Sum_probs=282.1
Q ss_pred ehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcccccccccc-CCcccEEEE
Q 020527 5 LGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQ-RLMGHVQFV 83 (325)
Q Consensus 5 ~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~ 83 (325)
.++..+..|++|+|+++....+..++..|..-++..+.++.++....++++++++.+.+..+.++.++.+ ...+.+.++
T Consensus 187 ~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~pda~~L~~~~~g~v~F~ 266 (497)
T COG5265 187 MSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFI 266 (497)
T ss_pred hcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccCCCCccccccccceEEEE
Confidence 4667788999999999999999999999999999999999999999999999999887655444333333 223459999
Q ss_pred EEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEcc
Q 020527 84 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQ 163 (325)
Q Consensus 84 ~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q 163 (325)
||+|.|..+ +++|+++||++++|+.++++||||+||||++++|.++|++++|.|.+||+++.......+|+.||+|||
T Consensus 267 ~V~F~y~~~--r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQ 344 (497)
T COG5265 267 NVSFAYDPR--RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQ 344 (497)
T ss_pred EEEeecccc--chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcc
Confidence 999999764 589999999999999999999999999999999999999999999999999998888889999999999
Q ss_pred CCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEE
Q 020527 164 EPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLL 241 (325)
Q Consensus 164 ~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~llll 241 (325)
|..||+.|++.|+.+|. +...++++..+++.+.+.+++..+|.|+++.+++ -.|||||||||+|||+++++|+||+|
T Consensus 345 DtvLFNDti~yni~ygr-~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~ 423 (497)
T COG5265 345 DTVLFNDTIAYNIKYGR-PDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILIL 423 (497)
T ss_pred cceehhhhHHHHHhccC-ccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999995 4677888999999999999999999999999986 46999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHH
Q 020527 242 DEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVK 318 (325)
Q Consensus 242 DEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 318 (325)
||+||+||..+++.++..|++.. .|+|.++|.|+++.+..||.|+||++|+|+|.|+|++++..+++|.+||.
T Consensus 424 deatsaldt~te~~iq~~l~~~~----~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~~~g~ya~mw~ 496 (497)
T COG5265 424 DEATSALDTHTEQAIQAALREVS----AGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGGLYAEMWR 496 (497)
T ss_pred ehhhhHhhhhHHHHHHHHHHHHh----CCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHHcCChHHHHhc
Confidence 99999999999999999999996 47899999999999999999999999999999999999999999999985
No 40
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-57 Score=424.46 Aligned_cols=217 Identities=35% Similarity=0.526 Sum_probs=198.2
Q ss_pred cccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhc
Q 020527 77 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 156 (325)
Q Consensus 77 ~~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~ 156 (325)
|..|+++||+|.|++. .+++++||+|++||+++|+||||||||||||+|+||.+|++|+|+|+|.+++++++. ++
T Consensus 1 M~~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~--~R 75 (338)
T COG3839 1 MAELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPE--KR 75 (338)
T ss_pred CcEEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--HC
Confidence 4579999999999753 299999999999999999999999999999999999999999999999999998776 47
Q ss_pred ceEEEccCCcCc-cccHHHHHhcCCCC-----CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 020527 157 KIGFVGQEPQLL-QMDIKSNIMYGCPK-----DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 230 (325)
Q Consensus 157 ~i~~v~Q~~~l~-~~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 230 (325)
.||||||++.|| .+||+||++|+... ...++++.++++..++.+++++.| .+|||||||||||||
T Consensus 76 ~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P---------~~LSGGQrQRVAlaR 146 (338)
T COG3839 76 GIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP---------LQLSGGQRQRVALAR 146 (338)
T ss_pred CEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc---------ccCChhhHHHHHHHH
Confidence 899999999999 58999999998532 223566788899999999999988 679999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhhc
Q 020527 231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 309 (325)
Q Consensus 231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~ 309 (325)
||+++|+++|||||+|+||.+.+..+...|++++++ .|.|+|+||||..++. .+|||.+|++|+|.+.|+|.+++.+
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~--l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~ 224 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHER--LGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER 224 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHh--cCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhC
Confidence 999999999999999999999999999999999875 5889999999998885 5999999999999999999999865
No 41
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=5.3e-56 Score=485.84 Aligned_cols=299 Identities=23% Similarity=0.346 Sum_probs=262.0
Q ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccc-----------------cccccCC
Q 020527 14 QVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSE-----------------GVKLQRL 76 (325)
Q Consensus 14 ~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-----------------~~~~~~~ 76 (325)
.++.|.+..++.|...+..++..+...+..+..+..+++|+.++++.+++...... ..+.++.
T Consensus 1135 ~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~ 1214 (1490)
T TIGR01271 1135 QDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPS 1214 (1490)
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCC
Confidence 45566665566677777888888888889999999999999999987765321100 0011233
Q ss_pred cccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhc
Q 020527 77 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 156 (325)
Q Consensus 77 ~~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~ 156 (325)
.+.|+++||+++|+.. .+++|+|+||+|++||++||+|+||||||||+++|+|+++ ++|+|.+||.++.+++...+|+
T Consensus 1215 ~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~ 1292 (1490)
T TIGR01271 1215 GGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRK 1292 (1490)
T ss_pred CCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHh
Confidence 4579999999999753 3579999999999999999999999999999999999997 7999999999999999999999
Q ss_pred ceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcC
Q 020527 157 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILR 234 (325)
Q Consensus 157 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~ 234 (325)
+|+||||+|.+|++||++||... ...++++++++++.+++.+++..+|.|+++.+++ .+||||||||+||||||++
T Consensus 1293 ~is~IpQdp~LF~GTIR~NLdp~--~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr 1370 (1490)
T TIGR01271 1293 AFGVIPQKVFIFSGTFRKNLDPY--EQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILS 1370 (1490)
T ss_pred ceEEEeCCCccCccCHHHHhCcc--cCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999753 2456889999999999999999999999998874 5899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHH
Q 020527 235 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYA 314 (325)
Q Consensus 235 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~ 314 (325)
+|+|||||||||+||+.+.+.+.+.|++.. +++|||+|||+++.+..||+|++|++|+|++.|+|++++.++..|+
T Consensus 1371 ~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~----~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~~~~f~ 1446 (1490)
T TIGR01271 1371 KAKILLLDEPSAHLDPVTLQIIRKTLKQSF----SNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFK 1446 (1490)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHc----CCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcCCcHHH
Confidence 999999999999999999999999998874 3689999999999999999999999999999999999998888999
Q ss_pred HHHHHh
Q 020527 315 KLVKRQ 320 (325)
Q Consensus 315 ~~~~~~ 320 (325)
++++.+
T Consensus 1447 ~l~~~~ 1452 (1490)
T TIGR01271 1447 QAMSAA 1452 (1490)
T ss_pred HHHHHh
Confidence 998764
No 42
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-57 Score=426.14 Aligned_cols=216 Identities=32% Similarity=0.539 Sum_probs=196.4
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.++++||+|+|++ ..+++|+||+|++||+++|+||||||||||||+|+|+..|++|+|.++|+++..+++. ++.|
T Consensus 5 ~l~i~~v~k~yg~---~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 5 ALEIRNVSKSFGD---FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred eEEEEeeeeecCC---eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 5899999999984 4799999999999999999999999999999999999999999999999999988765 5789
Q ss_pred EEEccCCcCc-cccHHHHHhcCCC-CC-CC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 020527 159 GFVGQEPQLL-QMDIKSNIMYGCP-KD-VK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 231 (325)
Q Consensus 159 ~~v~Q~~~l~-~~tv~enl~~~~~-~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 231 (325)
|+|||++.|| ++||+|||+||.. .. .. .+++.++++.+++.++.++.| ++|||||+|||+||||
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p---------~qLSGGQqQRVALARA 150 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP---------HQLSGGQQQRVALARA 150 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh---------hhhChHHHHHHHHHHH
Confidence 9999999999 5999999999975 11 11 236777888888888888877 6799999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhhcC
Q 020527 232 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHKG 310 (325)
Q Consensus 232 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~~ 310 (325)
|+.+|++||||||.|+||.+-+.++...++++.++ .|.|.|+||||.+++- .+|||.+|++|+|...|+|++++...
T Consensus 151 L~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~--~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 151 LVPEPKVLLLDEPLSALDAKLREQMRKELKELQRE--LGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred hhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHh--cCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 99999999999999999999999999999999875 5999999999999875 59999999999999999999998753
No 43
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.7e-57 Score=395.91 Aligned_cols=227 Identities=31% Similarity=0.489 Sum_probs=195.3
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHH---HHh
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLR 155 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~---~~r 155 (325)
.|++++|+++|+++ .+++|+||+|++||+++|+||||||||||+|+|.|+++|++|+|+++|+++...+.. .+|
T Consensus 8 ~I~vr~v~~~fG~~---~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 8 LIEVRGVTKSFGDR---VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred eEEEeeeeeecCCE---EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 49999999999864 699999999999999999999999999999999999999999999999999887753 568
Q ss_pred cceEEEccCCcCc-cccHHHHHhcCCCC--CCCHHHH----HHHHHHcCHHHH-HHhCCCCcccccCCCCCChHHHHHHH
Q 020527 156 EKIGFVGQEPQLL-QMDIKSNIMYGCPK--DVKNEDI----EWAAKQAYVHEF-ILSLPCGYETLVDDDLLSGGQKQRIA 227 (325)
Q Consensus 156 ~~i~~v~Q~~~l~-~~tv~enl~~~~~~--~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~LSgGq~QRv~ 227 (325)
+++|++||+..|| ++||+||++|.... +..+..+ ...++.+++... .+.+| .+|||||++|++
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P---------sELSGGM~KRva 155 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP---------SELSGGMRKRVA 155 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc---------hhhcchHHHHHH
Confidence 9999999999999 68999999986421 2223322 223445555544 45555 789999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHH
Q 020527 228 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL 306 (325)
Q Consensus 228 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l 306 (325)
||||++.+|+|+++||||+||||.+...+-++++++++. -|.|+++||||++.+.. |||++++.+|+|+..|+++++
T Consensus 156 LARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~--lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el 233 (263)
T COG1127 156 LARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDA--LGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL 233 (263)
T ss_pred HHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHh--hCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999874 58999999999999865 999999999999999999999
Q ss_pred hhcC-HHHHHHHHH
Q 020527 307 LHKG-RLYAKLVKR 319 (325)
Q Consensus 307 ~~~~-~~~~~~~~~ 319 (325)
.+.+ .+.++++..
T Consensus 234 ~~sd~P~v~qf~~G 247 (263)
T COG1127 234 LASDDPWVRQFFNG 247 (263)
T ss_pred HhCCCHHHHHHhcC
Confidence 8764 445565543
No 44
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-56 Score=401.33 Aligned_cols=215 Identities=30% Similarity=0.541 Sum_probs=187.2
Q ss_pred ccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 020527 78 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 157 (325)
Q Consensus 78 ~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~ 157 (325)
..|+++|++++|+++ ++|+||||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|++...... +.+
T Consensus 3 ~~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~ 76 (254)
T COG1121 3 PMIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLR 76 (254)
T ss_pred cEEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCe
Confidence 359999999999753 49999999999999999999999999999999999999999999999988754321 468
Q ss_pred eEEEccCCcC---ccccHHHHHhcCCCCC---------CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527 158 IGFVGQEPQL---LQMDIKSNIMYGCPKD---------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 225 (325)
Q Consensus 158 i~~v~Q~~~l---~~~tv~enl~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR 225 (325)
||||||...+ |+.||+|-+.+|...+ .+.+.+.++++++++.++.++.. .+|||||+||
T Consensus 77 IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i---------~~LSGGQ~QR 147 (254)
T COG1121 77 IGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQI---------GELSGGQKQR 147 (254)
T ss_pred EEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcc---------cccCcHHHHH
Confidence 9999997643 6899999999874322 12466788888888888776544 5799999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChH
Q 020527 226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA 304 (325)
Q Consensus 226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~ 304 (325)
|.|||||+++|++|+|||||+|+|+.++..+.++|+++++ +|+||++||||++.+. .||+|+.|+ +++++.|+++
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~---eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~ 223 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ---EGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPE 223 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChh
Confidence 9999999999999999999999999999999999999986 3999999999999885 599999995 5788999999
Q ss_pred HHhhcCH
Q 020527 305 ELLHKGR 311 (325)
Q Consensus 305 ~l~~~~~ 311 (325)
++++.+.
T Consensus 224 ~~~~~~~ 230 (254)
T COG1121 224 EVLTEEN 230 (254)
T ss_pred hccCHHH
Confidence 9987644
No 45
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.6e-57 Score=393.79 Aligned_cols=216 Identities=35% Similarity=0.519 Sum_probs=187.0
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCC---HHHHh
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD---IRWLR 155 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~---~~~~r 155 (325)
+|+++||++.|+++ +++|+||||+|++||+++|+||||||||||||+|+|+.+|++|+|.++|.++..+. .+.+|
T Consensus 3 ~i~~~nl~k~yp~~--~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPGG--HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCCC--ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 59999999999753 57999999999999999999999999999999999999999999999999887765 45678
Q ss_pred cceEEEccCCcCc-cccHHHHHhcCCCC-------------CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChH
Q 020527 156 EKIGFVGQEPQLL-QMDIKSNIMYGCPK-------------DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGG 221 (325)
Q Consensus 156 ~~i~~v~Q~~~l~-~~tv~enl~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgG 221 (325)
++|||+||+++|. +.||.+|+..|+.. ........++++++++.+...+. ..+||||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qr---------a~~LSGG 151 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQR---------ASTLSGG 151 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHH---------hccCCcc
Confidence 8999999999997 68999999766321 11122334455666655544332 2579999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEE
Q 020527 222 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEV 300 (325)
Q Consensus 222 q~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~ 300 (325)
|+|||+|||||+++|+++|.|||+|+|||.+.+++++.|++++++ .|.|+|+..|+++.+. +||||+-|++|+|+.+
T Consensus 152 QQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~--~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 152 QQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQE--DGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred hhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHH--cCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 999999999999999999999999999999999999999999875 6999999999999996 5999999999999999
Q ss_pred cChHHHh
Q 020527 301 GNHAELL 307 (325)
Q Consensus 301 g~~~~l~ 307 (325)
|++.++-
T Consensus 230 g~~~el~ 236 (258)
T COG3638 230 GPASELT 236 (258)
T ss_pred CChhhhh
Confidence 9998853
No 46
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.7e-57 Score=387.95 Aligned_cols=219 Identities=31% Similarity=0.480 Sum_probs=190.6
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCC-----CeEEECCEeCCCC--CH
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-----GQIYIDGFPLTDL--DI 151 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~-----G~I~i~g~~i~~~--~~ 151 (325)
.++++|+++.|+.+ .+|+|||++|++++++|++||||||||||||++.++....+ |+|.++|+++.+. +.
T Consensus 7 ~~~~~~l~~yYg~~---~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 7 AIEVRDLNLYYGDK---HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred eeEecceeEEECch---hhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 48999999999854 69999999999999999999999999999999999988765 9999999999654 57
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCCC-----CCHHHHHHHHHHcCHHHHHH-hCCCCcccccCCCCCChHHHHH
Q 020527 152 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFIL-SLPCGYETLVDDDLLSGGQKQR 225 (325)
Q Consensus 152 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~LSgGq~QR 225 (325)
..+|++||+|||.|..|++|++||++||...+ .-++.++++++.+.+++-+. ++. ..+..|||||+||
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~------~sa~~LSGGQQQR 157 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLH------KSALGLSGGQQQR 157 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhh------CCccCCChhHHHH
Confidence 78999999999999999999999999984321 11344666777777765433 221 1124599999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChH
Q 020527 226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 304 (325)
Q Consensus 226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~ 304 (325)
+||||||+.+|+|||||||||+|||.+..+|.+++.++++ ..|||+|||+|..+.+ +|+..++..|+++|.|+.+
T Consensus 158 LcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~----~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~ 233 (253)
T COG1117 158 LCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK----KYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTD 233 (253)
T ss_pred HHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh----ccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHH
Confidence 9999999999999999999999999999999999999974 5799999999999876 8999999999999999999
Q ss_pred HHhhcC
Q 020527 305 ELLHKG 310 (325)
Q Consensus 305 ~l~~~~ 310 (325)
+++++.
T Consensus 234 ~iF~~P 239 (253)
T COG1117 234 KIFTNP 239 (253)
T ss_pred hhhcCc
Confidence 999864
No 47
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=1.1e-55 Score=444.43 Aligned_cols=279 Identities=21% Similarity=0.294 Sum_probs=239.9
Q ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCC--Ccc-ccccc-----cccCCcccEEEEE
Q 020527 13 GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPS--NQF-LSEGV-----KLQRLMGHVQFVN 84 (325)
Q Consensus 13 g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~--~~~-~~~~~-----~~~~~~~~i~~~~ 84 (325)
|.+|+|++++|..+...+..|+..+...+..++++..+++|+.++++.+.+ ... .+... ........|+++|
T Consensus 263 ~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (555)
T TIGR01194 263 ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKD 342 (555)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEE
Confidence 799999999999999999999999999999999999999999999864211 110 01000 0011123599999
Q ss_pred EEEECCCCC--CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEc
Q 020527 85 ISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG 162 (325)
Q Consensus 85 v~~~y~~~~--~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~ 162 (325)
|+|+|+++. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+..++|++++|++
T Consensus 343 v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~ 422 (555)
T TIGR01194 343 VHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIF 422 (555)
T ss_pred EEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEc
Confidence 999997531 135999999999999999999999999999999999999999999999999999988888999999999
Q ss_pred cCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEe
Q 020527 163 QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLD 242 (325)
Q Consensus 163 Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllD 242 (325)
|++.+|+.|+++|.. +...++++.++++.++++++++.+|.|+++. .+||||||||++||||++++|+++|||
T Consensus 423 q~~~lf~~ti~~n~~----~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~---~~LSgGq~qRlalaRall~~~~ililD 495 (555)
T TIGR01194 423 ADFHLFDDLIGPDEG----EHASLDNAQQYLQRLEIADKVKIEDGGFSTT---TALSTGQQKRLALICAWLEDRPILLFD 495 (555)
T ss_pred cChhhhhhhhhcccc----cchhHHHHHHHHHHcCCchhhcccccccCCc---ccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 999999999999952 2345677888999999999999999998875 679999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHH-HhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEc
Q 020527 243 EATSALDSESEHYVKGVLH-ALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 301 (325)
Q Consensus 243 EPts~LD~~~~~~i~~~l~-~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g 301 (325)
||||+||+++++.+.+.+. .+.. +++|+|+|||+++.+..||+|++|++|++++.-
T Consensus 496 E~ts~LD~~~~~~i~~~l~~~~~~---~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~~ 552 (555)
T TIGR01194 496 EWAADQDPAFKRFFYEELLPDLKR---QGKTIIIISHDDQYFELADQIIKLAAGCIVKDT 552 (555)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHh---CCCEEEEEeccHHHHHhCCEEEEEECCEEEEec
Confidence 9999999999999988654 4432 378999999999988889999999999998753
No 48
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3.6e-56 Score=393.14 Aligned_cols=208 Identities=38% Similarity=0.535 Sum_probs=175.2
Q ss_pred EEEEEEEEECCCCC-CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHH---H-H
Q 020527 80 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---W-L 154 (325)
Q Consensus 80 i~~~~v~~~y~~~~-~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~---~-~ 154 (325)
++++||++.|+... ...+|+++||+|++||+++|+|||||||||||++|.|+.+|++|.|.++|+++..++.+ . .
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 67999999996432 24699999999999999999999999999999999999999999999999999887743 2 3
Q ss_pred hcceEEEccCCcCc-cccHHHHHhcCCC----CC-CCHHHHHHHHHHcCHHHHHH-hCCCCcccccCCCCCChHHHHHHH
Q 020527 155 REKIGFVGQEPQLL-QMDIKSNIMYGCP----KD-VKNEDIEWAAKQAYVHEFIL-SLPCGYETLVDDDLLSGGQKQRIA 227 (325)
Q Consensus 155 r~~i~~v~Q~~~l~-~~tv~enl~~~~~----~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~LSgGq~QRv~ 227 (325)
|++||||||+++|+ .+||.|||.++.. .. ...+.....++.+++.+... +.| .+||||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p---------~eLSGGqqQRVA 152 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP---------SELSGGQQQRVA 152 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc---------hhcCHHHHHHHH
Confidence 56799999999998 5899999985421 11 11223344445555554433 333 689999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEE
Q 020527 228 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRII 298 (325)
Q Consensus 228 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~ 298 (325)
|||||+.+|+++|+||||++||.++.+.+++++.++.++ .|+|+|+||||...+..|||++.|++|++.
T Consensus 153 IARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~--~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 153 IARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKE--RGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHh--cCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 999999999999999999999999999999999999764 589999999999999999999999999953
No 49
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.4e-56 Score=392.89 Aligned_cols=200 Identities=35% Similarity=0.542 Sum_probs=175.0
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.+++++|+++|++ ..+|+|+||+|++||+++|+||||||||||||+|+|+.+|++|+|.++|.++... ...+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCE
Confidence 4899999999986 3699999999999999999999999999999999999999999999999988432 3579
Q ss_pred EEEccCCcCcc-ccHHHHHhcCCCCC-----CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 020527 159 GFVGQEPQLLQ-MDIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 232 (325)
Q Consensus 159 ~~v~Q~~~l~~-~tv~enl~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 232 (325)
+||||++.||+ .||+||+.++.... ...+...+.++.+++.++.+++| ++|||||||||+|||||
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P---------~qLSGGMrQRVaiARAL 145 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP---------HQLSGGMRQRVAIARAL 145 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc---------cccChHHHHHHHHHHHH
Confidence 99999999995 89999999875321 11234556677777777777766 78999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeC--CEE
Q 020527 233 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD--GRI 297 (325)
Q Consensus 233 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~--G~i 297 (325)
+.+|++|||||||++||..++..+.+.+.++.++ .++||++||||++++-. +|||++|.+ |+|
T Consensus 146 ~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~--~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i 211 (248)
T COG1116 146 ATRPKLLLLDEPFGALDALTREELQDELLRLWEE--TRKTVLLVTHDVDEAVYLADRVVVLSNRPGRI 211 (248)
T ss_pred hcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHh--hCCEEEEEeCCHHHHHhhhCEEEEecCCCcce
Confidence 9999999999999999999999999999988764 57899999999999865 999999999 445
No 50
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=2.9e-56 Score=377.15 Aligned_cols=210 Identities=30% Similarity=0.483 Sum_probs=187.4
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCH---HHHh
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI---RWLR 155 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~---~~~r 155 (325)
+|+++||+|.|++. +++|+||||+|++||++-|+||||||||||+|+|++..+|++|+|+++|.++..+.. ..+|
T Consensus 1 mI~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LR 78 (223)
T COG2884 1 MIRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLR 78 (223)
T ss_pred CeeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhh
Confidence 38999999999864 579999999999999999999999999999999999999999999999999987654 4579
Q ss_pred cceEEEccCCcCc-cccHHHHHhcCCC-----CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 020527 156 EKIGFVGQEPQLL-QMDIKSNIMYGCP-----KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 229 (325)
Q Consensus 156 ~~i~~v~Q~~~l~-~~tv~enl~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA 229 (325)
++||+||||..|+ ..||+||++|+.. +....+++.++++.+++.+....+| .+|||||||||+||
T Consensus 79 R~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP---------~~LSGGEQQRvaIA 149 (223)
T COG2884 79 RQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP---------SQLSGGEQQRVAIA 149 (223)
T ss_pred heeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc---------cccCchHHHHHHHH
Confidence 9999999999987 6899999998642 2222456677888888888777777 67999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcC
Q 020527 230 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 302 (325)
Q Consensus 230 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~ 302 (325)
||++.+|++||.||||.+|||....++++++.++.+ .|.||+|+|||.+.+.. --|++.+++|+++.+..
T Consensus 150 RAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr---~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 150 RAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR---LGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh---cCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 999999999999999999999999999999999975 59999999999999987 57899999999987654
No 51
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-55 Score=398.36 Aligned_cols=216 Identities=31% Similarity=0.494 Sum_probs=189.1
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCE---eCCCCCHHHHh
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF---PLTDLDIRWLR 155 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~---~i~~~~~~~~r 155 (325)
+|+++|+++.|+.. .+++|||++|+.||.+|++||||||||||||+|+||..|++|+|.+||+ |.+... ...
T Consensus 2 ~i~i~~~~~~~~~~---~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~--~~~ 76 (345)
T COG1118 2 SIRINNVKKRFGAF---GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLA--VRD 76 (345)
T ss_pred ceeehhhhhhcccc---cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccc--hhh
Confidence 48999999999764 6999999999999999999999999999999999999999999999999 554432 234
Q ss_pred cceEEEccCCcCc-cccHHHHHhcCCCCC-------CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 020527 156 EKIGFVGQEPQLL-QMDIKSNIMYGCPKD-------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 227 (325)
Q Consensus 156 ~~i~~v~Q~~~l~-~~tv~enl~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~ 227 (325)
++||||||++.+| .+||.+||+||.... ..+.++.+.++.++++.+.+++| .+||||||||||
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP---------~QLSGGQrQRVA 147 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP---------AQLSGGQRQRVA 147 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc---------hhcChHHHHHHH
Confidence 7899999999998 699999999996321 22344555666677777767666 689999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHH
Q 020527 228 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL 306 (325)
Q Consensus 228 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l 306 (325)
|||||+.+|++||||||+++||...++.+...|+++.++ .|.|+++||||.+++.. ||||++|++|+|...|+|+++
T Consensus 148 LARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~--~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 148 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDR--LGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHh--hCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 999999999999999999999999999999999999864 58999999999999854 999999999999999999999
Q ss_pred hhcC
Q 020527 307 LHKG 310 (325)
Q Consensus 307 ~~~~ 310 (325)
+...
T Consensus 226 ~~~P 229 (345)
T COG1118 226 YDHP 229 (345)
T ss_pred hcCC
Confidence 8653
No 52
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.3e-55 Score=382.82 Aligned_cols=228 Identities=35% Similarity=0.507 Sum_probs=193.9
Q ss_pred cEEEEEEEEECCCCC-CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCC-HHHHhc
Q 020527 79 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-IRWLRE 156 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~-~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~-~~~~r~ 156 (325)
.++++|+++.|+.+. ..+++++|||+|.+||++||+|+||||||||.|+|+|+.+|++|+|.++|+++.... .+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 589999999998642 125999999999999999999999999999999999999999999999998776432 335678
Q ss_pred ceEEEccCCcC--c-cccHHHHHhcCCCC---CCCHHHHHHHHHHcCHH-HHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 020527 157 KIGFVGQEPQL--L-QMDIKSNIMYGCPK---DVKNEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQRIAIA 229 (325)
Q Consensus 157 ~i~~v~Q~~~l--~-~~tv~enl~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA 229 (325)
.|.+|||||.- - ..||++-|.-+... ....+++.++++.+++. +++++.| .+|||||+||||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P---------~eLSGGQ~QRiaIA 153 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP---------HELSGGQRQRIAIA 153 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc---------hhcChhHHHHHHHH
Confidence 89999999953 3 46999988755321 12234467778888774 4677777 67999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527 230 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 308 (325)
Q Consensus 230 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 308 (325)
|||..+|++||||||||+||+..+.+++++|.+++++ .+.|.|+||||+..+.+ ||||++|++|++++.++.+++.+
T Consensus 154 RAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~--~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 154 RALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKE--RGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHh--cCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 9999999999999999999999999999999999875 58899999999999986 99999999999999999999987
Q ss_pred c-CHHHHHHH
Q 020527 309 K-GRLYAKLV 317 (325)
Q Consensus 309 ~-~~~~~~~~ 317 (325)
. ..-|.+.+
T Consensus 232 ~~~h~ytr~L 241 (252)
T COG1124 232 HPSHPYTREL 241 (252)
T ss_pred CCccHHHHHH
Confidence 6 44554443
No 53
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.9e-54 Score=471.67 Aligned_cols=298 Identities=24% Similarity=0.346 Sum_probs=259.2
Q ss_pred eeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEEE
Q 020527 3 VLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQF 82 (325)
Q Consensus 3 ~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 82 (325)
+++|+|++..|.+|+|.+++++.++..+..|+..+...+..+.++..+++|+.++++.+++.... .. ........+++
T Consensus 540 ~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~-~~-~~~~~~~~I~~ 617 (1495)
T PLN03232 540 VSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQ-NP-PLQPGAPAISI 617 (1495)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccc-cC-CcCCCCCcEEE
Confidence 45688999999999999999999999999999999999999999999999999999876542111 10 11111235999
Q ss_pred EEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEc
Q 020527 83 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG 162 (325)
Q Consensus 83 ~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~ 162 (325)
+|++|+|+.+.++++|+|+||+|++||.++|+||||||||||+++|+|+++|++|.+. .+|++|+||+
T Consensus 618 ~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~------------~~~~~Iayv~ 685 (1495)
T PLN03232 618 KNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV------------VIRGSVAYVP 685 (1495)
T ss_pred EeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE------------EecCcEEEEc
Confidence 9999999753235799999999999999999999999999999999999999999763 2467899999
Q ss_pred cCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEE
Q 020527 163 QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILL 240 (325)
Q Consensus 163 Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~lll 240 (325)
|+|.+|++||+|||.||.+ .++++..++++.+++.+.++.+|.|++|.+++ .+||||||||++||||++++|+|+|
T Consensus 686 Q~p~Lf~gTIreNI~fg~~--~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlL 763 (1495)
T PLN03232 686 QVSWIFNATVRENILFGSD--FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYI 763 (1495)
T ss_pred CccccccccHHHHhhcCCc--cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999999853 46788889999999999999999999999885 5799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHH-HHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHHH
Q 020527 241 LDEATSALDSESEHYVKGV-LHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKR 319 (325)
Q Consensus 241 lDEPts~LD~~~~~~i~~~-l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 319 (325)
||||||+||+.+++.+.+. +.... +++|+|+|||+++.+..||+|++|++|++++.|+++++++.+..|.+++..
T Consensus 764 LDEptSaLD~~t~~~I~~~~l~~~l----~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~~~~~~~l~~~ 839 (1495)
T PLN03232 764 FDDPLSALDAHVAHQVFDSCMKDEL----KGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLMEN 839 (1495)
T ss_pred EcCCccccCHHHHHHHHHHHhhhhh----cCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhcchhHHHHHHh
Confidence 9999999999999888654 55442 478999999999999999999999999999999999999888888888765
Q ss_pred h
Q 020527 320 Q 320 (325)
Q Consensus 320 ~ 320 (325)
+
T Consensus 840 ~ 840 (1495)
T PLN03232 840 A 840 (1495)
T ss_pred c
Confidence 3
No 54
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-55 Score=393.91 Aligned_cols=219 Identities=36% Similarity=0.610 Sum_probs=193.5
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCC-CCCHHHHhcc
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT-DLDIRWLREK 157 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~-~~~~~~~r~~ 157 (325)
.++++|++|+|+++ .++|+++||+|++||+++|+|+||||||||+++++|+++|++|+|.++|.++. ..+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 48999999999764 47999999999999999999999999999999999999999999999999987 3567788999
Q ss_pred eEEEccCC--cCccccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 020527 158 IGFVGQEP--QLLQMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 230 (325)
Q Consensus 158 i~~v~Q~~--~l~~~tv~enl~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 230 (325)
||||||+| ++|..||.|.++||... ... ++++.++++.+++.++.++.| .+|||||||||+||.
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p---------~~LSGGqkqRvaIA~ 151 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP---------FNLSGGQKQRVAIAG 151 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc---------cccCCcceeeHHhhH
Confidence 99999999 67789999999998421 112 234556677777776655555 679999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhc
Q 020527 231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 309 (325)
Q Consensus 231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 309 (325)
+|+.+|++||||||||+||+..++.+++.+++++++ .|+|+|++|||++.+.. |||+++|++|+++.+|+|++++++
T Consensus 152 vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~--~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 152 VLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEE--GGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred HHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhc--CCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 999999999999999999999999999999999864 47899999999999865 999999999999999999999875
Q ss_pred C
Q 020527 310 G 310 (325)
Q Consensus 310 ~ 310 (325)
.
T Consensus 230 ~ 230 (235)
T COG1122 230 A 230 (235)
T ss_pred h
Confidence 4
No 55
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=1.4e-54 Score=410.39 Aligned_cols=219 Identities=32% Similarity=0.484 Sum_probs=186.8
Q ss_pred EEEEEEEEECCCCC-CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHH---HHh
Q 020527 80 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLR 155 (325)
Q Consensus 80 i~~~~v~~~y~~~~-~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~---~~r 155 (325)
|+++||+++|+++. ..++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..++.. ..|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 89999999996321 24699999999999999999999999999999999999999999999999999876543 357
Q ss_pred cceEEEccCCcCc-cccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 020527 156 EKIGFVGQEPQLL-QMDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 229 (325)
Q Consensus 156 ~~i~~v~Q~~~l~-~~tv~enl~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA 229 (325)
++|||+||++.+| ..||+||+.++.. .... .+++.+.++.+++.+..++.+ .+|||||||||+||
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~---------~~LSgGqkQRV~IA 152 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP---------SNLSGGQKQRVAIA 152 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh---------hhCCHHHHHHHHHH
Confidence 8899999999998 5899999987532 1111 123444555556555544443 67999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527 230 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 308 (325)
Q Consensus 230 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 308 (325)
|||+.+|++||+|||||+||+.++..++++|++++++ .|.|||+|||+++.+.. ||+|++|++|++++.|++++++.
T Consensus 153 RAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~--~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 153 RALASNPKVLLCDEATSALDPATTQSILELLKEINRR--LGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 9999999999999999999999999999999999753 48899999999999865 99999999999999999999986
Q ss_pred c
Q 020527 309 K 309 (325)
Q Consensus 309 ~ 309 (325)
.
T Consensus 231 ~ 231 (343)
T TIGR02314 231 H 231 (343)
T ss_pred C
Confidence 4
No 56
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.1e-53 Score=469.04 Aligned_cols=297 Identities=24% Similarity=0.401 Sum_probs=258.4
Q ss_pred eeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEEE
Q 020527 3 VLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQF 82 (325)
Q Consensus 3 ~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 82 (325)
+++|+|++..|.+|+|.+++++.++..+..|+..+...+..+.++..+++|+.++++.++..... .. ........|++
T Consensus 540 ~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~-~~-~~~~~~~~I~~ 617 (1622)
T PLN03130 540 VSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLP-NP-PLEPGLPAISI 617 (1622)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccc-CC-cccCCCCceEE
Confidence 35688899999999999999999999999999999999999999999999999999765432111 11 00111235999
Q ss_pred EEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCC-CeEEECCEeCCCCCHHHHhcceEEE
Q 020527 83 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-GQIYIDGFPLTDLDIRWLREKIGFV 161 (325)
Q Consensus 83 ~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~-G~I~i~g~~i~~~~~~~~r~~i~~v 161 (325)
+|++|+|+.+.++++|+|+||+|++||.++|+||||||||||+++|+|+++|++ |+|.+ |.+|+||
T Consensus 618 ~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l-------------~~~Iayv 684 (1622)
T PLN03130 618 KNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI-------------RGTVAYV 684 (1622)
T ss_pred EeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-------------cCeEEEE
Confidence 999999975323579999999999999999999999999999999999999999 89974 4579999
Q ss_pred ccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEE
Q 020527 162 GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAIL 239 (325)
Q Consensus 162 ~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~ll 239 (325)
+|+|.+|++||+|||.||.+ .++++..++++.+++.+.++.+|.|++|.+++ .+|||||||||+||||++++|+|+
T Consensus 685 ~Q~p~LfngTIreNI~fg~~--~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~Il 762 (1622)
T PLN03130 685 PQVSWIFNATVRDNILFGSP--FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVY 762 (1622)
T ss_pred cCccccCCCCHHHHHhCCCc--ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEE
Confidence 99999999999999999853 45778899999999999999999999999875 579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHH-HHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHH
Q 020527 240 LLDEATSALDSESEHYVKG-VLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVK 318 (325)
Q Consensus 240 llDEPts~LD~~~~~~i~~-~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 318 (325)
|||||||+||+.+.+.+.+ .+..+. +++|+|+|||+++.+..||+|++|++|++++.|+++++++.+..|.+++.
T Consensus 763 LLDEptSALD~~~~~~I~~~~l~~~l----~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~~~~~~~l~~ 838 (1622)
T PLN03130 763 IFDDPLSALDAHVGRQVFDKCIKDEL----RGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKLME 838 (1622)
T ss_pred EECCCccccCHHHHHHHHHHHhhHHh----cCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhcchhHHHHHH
Confidence 9999999999999988764 555543 47899999999999999999999999999999999999988888888776
Q ss_pred Hh
Q 020527 319 RQ 320 (325)
Q Consensus 319 ~~ 320 (325)
.+
T Consensus 839 ~~ 840 (1622)
T PLN03130 839 NA 840 (1622)
T ss_pred hc
Confidence 43
No 57
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=3.3e-53 Score=390.42 Aligned_cols=233 Identities=24% Similarity=0.409 Sum_probs=208.9
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.|+++|++++|++. ...+|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+|+|.++..++...+|++|
T Consensus 2 ~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 2 QMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred eEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 48999999999642 2469999999999999999999999999999999999998 799999999999888888889999
Q ss_pred EEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCC
Q 020527 159 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDP 236 (325)
Q Consensus 159 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p 236 (325)
+|+||++.+|+.|+++|+.... ....+++.++++.+++.++++++|.++++.+. +..||||||||++||||++.+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~--~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p 157 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYG--KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 157 (275)
T ss_pred EEECCCcccchhhHHHHhhhcc--CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999996321 23456778888999999999999988887765 3679999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHH
Q 020527 237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKL 316 (325)
Q Consensus 237 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~ 316 (325)
+||||||||++||+.+...+.+.|+++. .++|||+|||+++.+..||||++|++|++++.|+|+++++....|+++
T Consensus 158 ~illlDEpts~LD~~~~~~l~~~l~~~~----~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~ 233 (275)
T cd03289 158 KILLLDEPSAHLDPITYQVIRKTLKQAF----ADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQA 233 (275)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhc----CCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHH
Confidence 9999999999999999999999999873 378999999999988789999999999999999999999987778887
Q ss_pred HHH
Q 020527 317 VKR 319 (325)
Q Consensus 317 ~~~ 319 (325)
+..
T Consensus 234 ~~~ 236 (275)
T cd03289 234 ISP 236 (275)
T ss_pred Hhh
Confidence 754
No 58
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.3e-54 Score=407.67 Aligned_cols=218 Identities=28% Similarity=0.468 Sum_probs=189.2
Q ss_pred ccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 020527 78 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 157 (325)
Q Consensus 78 ~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~ 157 (325)
..|+++|++++|++. ..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+.. ++.
T Consensus 2 ~~l~i~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ 77 (356)
T PRK11650 2 AGLKLQAVRKSYDGK--TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRD 77 (356)
T ss_pred CEEEEEeEEEEeCCC--CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCC
Confidence 358999999999322 3699999999999999999999999999999999999999999999999999776543 478
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 020527 158 IGFVGQEPQLL-QMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 231 (325)
Q Consensus 158 i~~v~Q~~~l~-~~tv~enl~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 231 (325)
||||||++.+| .+||+||+.|+... ... .+++.++++..++.++.++.+ .+|||||||||+||||
T Consensus 78 ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LSgGq~QRvalARA 148 (356)
T PRK11650 78 IAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP---------RELSGGQRQRVAMGRA 148 (356)
T ss_pred EEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh---------hhCCHHHHHHHHHHHH
Confidence 99999999999 58999999987421 111 233456677777777666655 5799999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhhcC
Q 020527 232 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHKG 310 (325)
Q Consensus 232 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~~ 310 (325)
|+.+|++||||||||+||+.++..+.+.|+++.++ .|.|+|+||||++++. .||+|++|++|++++.|++++++++.
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p 226 (356)
T PRK11650 149 IVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRR--LKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKP 226 (356)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCC
Confidence 99999999999999999999999999999998753 4889999999999885 59999999999999999999998753
No 59
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=4.6e-53 Score=381.80 Aligned_cols=233 Identities=48% Similarity=0.755 Sum_probs=200.9
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 159 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~ 159 (325)
++++|++++|+.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 4789999999642 246999999999999999999999999999999999999999999999999887666666778899
Q ss_pred EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccc--CCCCCChHHHHHHHHHHHHcCCCC
Q 020527 160 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLV--DDDLLSGGQKQRIAIARAILRDPA 237 (325)
Q Consensus 160 ~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~LSgGq~QRv~iAral~~~p~ 237 (325)
|+||++.+|+.||+||+.++.. ......+....+..++.++++.++.++.... ...+|||||||||+|||||+.+|+
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ 158 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADP-GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPR 158 (237)
T ss_pred EEcCCchhccchHHHHhhccCC-CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 9999998888899999987532 2234445556666778888888766655433 346899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHH
Q 020527 238 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV 317 (325)
Q Consensus 238 llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 317 (325)
++||||||++||+.++..+.+.|+++. +|+|||++|||++.+..||++++|++|++++.|++++++.....|..++
T Consensus 159 llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 234 (237)
T cd03252 159 ILIFDEATSALDYESEHAIMRNMHDIC----AGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLY 234 (237)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhc----CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHHH
Confidence 999999999999999999999999884 2789999999999987799999999999999999999988777776655
Q ss_pred H
Q 020527 318 K 318 (325)
Q Consensus 318 ~ 318 (325)
+
T Consensus 235 ~ 235 (237)
T cd03252 235 Q 235 (237)
T ss_pred h
Confidence 4
No 60
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=1.2e-53 Score=358.84 Aligned_cols=213 Identities=35% Similarity=0.536 Sum_probs=192.1
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 159 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~ 159 (325)
+.+++|+++|+. .-=..+++|++||++||+||||||||||+++|+|+..|.+|+|+++|++....++. ++-++
T Consensus 2 l~L~~V~~~y~~-----~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVS 74 (231)
T COG3840 2 LALDDVRFSYGH-----LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVS 74 (231)
T ss_pred ccccceEEeeCc-----ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChh
Confidence 678999999964 33578899999999999999999999999999999999999999999998766554 46799
Q ss_pred EEccCCcCc-cccHHHHHhcCCCCC-----CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 020527 160 FVGQEPQLL-QMDIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 233 (325)
Q Consensus 160 ~v~Q~~~l~-~~tv~enl~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 233 (325)
++||+.+|| ..||.+|+.+|..+. ..++.+..++.++++..+.+++| .+|||||||||+|||+|+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP---------~~LSGGqRQRvALARclv 145 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP---------GELSGGQRQRVALARCLV 145 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCc---------cccCchHHHHHHHHHHHh
Confidence 999999999 689999999986532 23456778899999999999999 579999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhcC
Q 020527 234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 310 (325)
Q Consensus 234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~ 310 (325)
++-+||+||||||+|||.-+.+++.++.+++.+ ++.|++||||.++.+.. +|+++++++|+|.+.|+.++++...
T Consensus 146 R~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E--~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~ 221 (231)
T COG3840 146 REQPILLLDEPFSALDPALRAEMLALVSQLCDE--RKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGK 221 (231)
T ss_pred ccCCeEEecCchhhcCHHHHHHHHHHHHHHHHh--hCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccC
Confidence 999999999999999999999999999999875 58899999999999875 9999999999999999999988753
No 61
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-53 Score=384.24 Aligned_cols=220 Identities=30% Similarity=0.461 Sum_probs=181.6
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCH---HHHhc
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI---RWLRE 156 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~---~~~r~ 156 (325)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 478999999964 359999999999999999999999999999999999999999999999999876543 45678
Q ss_pred ceEEEccCCcCcc-ccHHHHHhcCCCC--CCCHH----HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 020527 157 KIGFVGQEPQLLQ-MDIKSNIMYGCPK--DVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 229 (325)
Q Consensus 157 ~i~~v~Q~~~l~~-~tv~enl~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA 229 (325)
.|+|+||++.+|+ .||+||+.++... ..... .+.++++..++.+..++ ...+|||||||||+||
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LSgG~~qrv~ia 148 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDL---------YPAELSGGMKKRVALA 148 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcC---------ChhhCCHHHHHHHHHH
Confidence 8999999998885 6999999875211 11111 22333444444333322 2357999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527 230 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 308 (325)
Q Consensus 230 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 308 (325)
|||+.+|++|||||||++||+.++..+.+.|+++.++ .|+|||++|||++.+.. ||++++|++|++++.|+++++..
T Consensus 149 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 149 RALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKE--LGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHh--cCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 9999999999999999999999999999999998652 37899999999998865 99999999999999999998876
Q ss_pred cCHHH
Q 020527 309 KGRLY 313 (325)
Q Consensus 309 ~~~~~ 313 (325)
....|
T Consensus 227 ~~~~~ 231 (235)
T cd03261 227 SDDPL 231 (235)
T ss_pred CCChh
Confidence 44333
No 62
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1.2e-52 Score=421.88 Aligned_cols=275 Identities=25% Similarity=0.311 Sum_probs=219.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEEEEEEEEECCCCCCC
Q 020527 16 SPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTV 95 (325)
Q Consensus 16 t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~ 95 (325)
+++.+.++..+...+..|+..+...+..++.+..+.+|+.++++.+++...+. ....+ ....|+++||+|+|+++ .
T Consensus 261 ~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~~~-~~~~~-~~~~i~~~~v~f~y~~~--~ 336 (547)
T PRK10522 261 DTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEFPR-PQAFP-DWQTLELRNVTFAYQDN--G 336 (547)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc-ccccC-cCceEEEEEEEEEeCCC--C
Confidence 34444445555555678999999999999999999999999876543321111 11111 12359999999999743 3
Q ss_pred CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHH
Q 020527 96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSN 175 (325)
Q Consensus 96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~en 175 (325)
++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+...+|++|+|+||++.+|++|+++|
T Consensus 337 ~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n 416 (547)
T PRK10522 337 FSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE 416 (547)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc
Confidence 69999999999999999999999999999999999999999999999999998888889999999999999999999998
Q ss_pred HhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHH
Q 020527 176 IMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHY 255 (325)
Q Consensus 176 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~ 255 (325)
+ ....++.+.++++..++...... +.+. ..+.+||||||||++||||++++|++||||||||+||+++++.
T Consensus 417 ---~--~~~~~~~~~~~~~~~~l~~~~~~-~~~~---~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~ 487 (547)
T PRK10522 417 ---G--KPANPALVEKWLERLKMAHKLEL-EDGR---ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRRE 487 (547)
T ss_pred ---c--CchHHHHHHHHHHHcCCchhhhc-cccC---CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHH
Confidence 2 12334555555665555443321 1111 1245799999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEE-cChHH
Q 020527 256 VKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEV-GNHAE 305 (325)
Q Consensus 256 i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~-g~~~~ 305 (325)
+.+.+.+..+. .++|+|+|||+++.+..||+|++|++|++++. |+..+
T Consensus 488 i~~~l~~~~~~--~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~~~~~~ 536 (547)
T PRK10522 488 FYQVLLPLLQE--MGKTIFAISHDDHYFIHADRLLEMRNGQLSELTGEERD 536 (547)
T ss_pred HHHHHHHHHHh--CCCEEEEEEechHHHHhCCEEEEEECCEEEEecCCchh
Confidence 99988765431 37899999999998888999999999999887 34333
No 63
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-53 Score=405.12 Aligned_cols=217 Identities=30% Similarity=0.500 Sum_probs=187.7
Q ss_pred cccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhc
Q 020527 77 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 156 (325)
Q Consensus 77 ~~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~ 156 (325)
|..|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. ++
T Consensus 4 ~~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r 78 (351)
T PRK11432 4 KNFVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QR 78 (351)
T ss_pred CcEEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HC
Confidence 446999999999974 3599999999999999999999999999999999999999999999999999765543 57
Q ss_pred ceEEEccCCcCc-cccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 020527 157 KIGFVGQEPQLL-QMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 230 (325)
Q Consensus 157 ~i~~v~Q~~~l~-~~tv~enl~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 230 (325)
+|||+||++.+| .+||+||+.|+... ... .+++.++++..++.++.++.+ .+|||||||||+|||
T Consensus 79 ~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~---------~~LSgGq~QRVaLAR 149 (351)
T PRK11432 79 DICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYV---------DQISGGQQQRVALAR 149 (351)
T ss_pred CEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHHHH
Confidence 899999999999 47999999987421 111 234445566666655555544 679999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhhc
Q 020527 231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 309 (325)
Q Consensus 231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~ 309 (325)
||+.+|++|||||||++||+.++.++.+.|+++.++ .|+|+|+||||++++. .||||++|++|++++.|++++++.+
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~ 227 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQ--FNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ 227 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999999999753 4889999999999985 5999999999999999999999865
No 64
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.9e-52 Score=441.73 Aligned_cols=298 Identities=30% Similarity=0.489 Sum_probs=267.0
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccc--cc-cccccCCcccEEEEEEEEECCC
Q 020527 15 VSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFL--SE-GVKLQRLMGHVQFVNISFHYPS 91 (325)
Q Consensus 15 it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~--~~-~~~~~~~~~~i~~~~v~~~y~~ 91 (325)
++.|.+-..+.|...+.+.+.-++....++.+...+++|+.++.+.++|.... .. +++.||..+.|+++|++.+|..
T Consensus 1071 ~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp 1150 (1381)
T KOG0054|consen 1071 ISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRP 1150 (1381)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCC
Confidence 67788777888988999988889999999999999999999999987662111 11 2334677789999999999976
Q ss_pred CCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCcccc
Q 020527 92 RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMD 171 (325)
Q Consensus 92 ~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~t 171 (325)
+ ...||+||||+|++||++||||+.|||||||+++|.++.+|.+|+|.|||.|+.+++..++|++++.+||||.||++|
T Consensus 1151 ~-lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGT 1229 (1381)
T KOG0054|consen 1151 N-LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGT 1229 (1381)
T ss_pred C-CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCc
Confidence 4 357999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCC
Q 020527 172 IKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALD 249 (325)
Q Consensus 172 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~llllDEPts~LD 249 (325)
+|.||--. ....+++++++++++++.+.+.++|.+++..+.+ .++|-||||.+||||||+++++||+|||+||++|
T Consensus 1230 vR~NLDPf--~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD 1307 (1381)
T KOG0054|consen 1230 VRFNLDPF--DEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVD 1307 (1381)
T ss_pred cccccCcc--cccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCC
Confidence 99999631 2456899999999999999999999999988764 7899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhc-CHHHHHHHHH
Q 020527 250 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK-GRLYAKLVKR 319 (325)
Q Consensus 250 ~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~ 319 (325)
+++...|++.|++-.+ ++|||.|.|+++.+-.||||+||++|+++|.|+|++++++ ...|++++.+
T Consensus 1308 ~~TD~lIQ~tIR~~F~----dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~~ 1374 (1381)
T KOG0054|consen 1308 PETDALIQKTIREEFK----DCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLKE 1374 (1381)
T ss_pred hHHHHHHHHHHHHHhc----CCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHHH
Confidence 9999999999998764 6799999999999999999999999999999999999987 5566666554
No 65
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=4.5e-53 Score=402.22 Aligned_cols=217 Identities=29% Similarity=0.452 Sum_probs=186.5
Q ss_pred ccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 020527 78 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 157 (325)
Q Consensus 78 ~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~ 157 (325)
..|+++||+++|++ ..+|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++|+++...++. ++.
T Consensus 3 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ 77 (353)
T TIGR03265 3 PYLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRD 77 (353)
T ss_pred cEEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCC
Confidence 35999999999975 3599999999999999999999999999999999999999999999999999765543 578
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 020527 158 IGFVGQEPQLL-QMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 231 (325)
Q Consensus 158 i~~v~Q~~~l~-~~tv~enl~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 231 (325)
|||+||++.+| .+||+||+.|+... ... ..++.++++..++.+++++.+ .+|||||||||+||||
T Consensus 78 ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~---------~~LSgGq~QRvaLARa 148 (353)
T TIGR03265 78 YGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYP---------GQLSGGQQQRVALARA 148 (353)
T ss_pred EEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCCh---------hhCCHHHHHHHHHHHH
Confidence 99999999999 58999999987421 111 223444555555555544444 6799999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhhcC
Q 020527 232 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHKG 310 (325)
Q Consensus 232 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~~ 310 (325)
|+.+|+++||||||++||+.++..+.+.|+++.++ .|.|+|+||||++++. .||||++|++|++++.|++++++++.
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~--~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p 226 (353)
T TIGR03265 149 LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRR--LGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP 226 (353)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999999999998753 4889999999999885 59999999999999999999998753
No 66
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=1e-52 Score=404.59 Aligned_cols=217 Identities=25% Similarity=0.432 Sum_probs=188.7
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...+++++
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 5899999999975 3699999999999999999999999999999999999999999999999999887777788899
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCCC---------CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 020527 159 GFVGQEPQLL-QMDIKSNIMYGCPKD---------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 228 (325)
Q Consensus 159 ~~v~Q~~~l~-~~tv~enl~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 228 (325)
||++|++.++ .+|++||+.++.... ...+.+.++++.+++.++.++.. .+||||||||++|
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~---------~~LSgGerQRv~I 150 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV---------TSLSGGERQRVLL 150 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHH
Confidence 9999999875 789999998864211 11223445556666655544432 5799999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHh
Q 020527 229 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELL 307 (325)
Q Consensus 229 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~ 307 (325)
||||+++|++|||||||++||+.++..++++|+++.+ +|+|||++|||++.+. .|||+++|++|++++.|++++++
T Consensus 151 ArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~---~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 151 ARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD---DGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh---cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999999999999974 3789999999999996 59999999999999999999988
Q ss_pred hcC
Q 020527 308 HKG 310 (325)
Q Consensus 308 ~~~ 310 (325)
+.+
T Consensus 228 ~~~ 230 (402)
T PRK09536 228 TAD 230 (402)
T ss_pred CcH
Confidence 653
No 67
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-52 Score=387.18 Aligned_cols=221 Identities=35% Similarity=0.545 Sum_probs=188.6
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.|+++||+++|++.....+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+...+++++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999642223599999999999999999999999999999999999999999999999999766666678899
Q ss_pred EEEccCCc--CccccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 020527 159 GFVGQEPQ--LLQMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 231 (325)
Q Consensus 159 ~~v~Q~~~--l~~~tv~enl~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 231 (325)
+|+||++. ++..||+||+.++... ... .+.+.++++.+++.++.++.+ .+||||||||++||||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LSgGq~qrv~lAra 154 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP---------ARLSGGQKQRVAIAGA 154 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc---------ccCCHHHHHHHHHHHH
Confidence 99999983 4468999999876321 111 233455666667666555544 5799999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcC
Q 020527 232 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG 310 (325)
Q Consensus 232 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~ 310 (325)
|+.+|++|||||||++||+.++..+.+.|++++++ .|+|||++|||++.+..|||+++|++|+++..|++++++...
T Consensus 155 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~ 231 (279)
T PRK13650 155 VAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDD--YQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRG 231 (279)
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcCh
Confidence 99999999999999999999999999999999753 488999999999988779999999999999999999887653
No 68
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=4.9e-52 Score=375.36 Aligned_cols=233 Identities=57% Similarity=0.911 Sum_probs=197.9
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 159 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~ 159 (325)
++++|+++.|++..+.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 46899999997532246999999999999999999999999999999999999999999999999887666556677899
Q ss_pred EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCCC
Q 020527 160 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPA 237 (325)
Q Consensus 160 ~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p~ 237 (325)
|+||++.+++.|++||+.++... ...+......+..++.++++.++.++.+... ..+|||||||||+|||||+.+|+
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 159 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPD-ATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPK 159 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCC-CCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCC
Confidence 99999988888999999886332 2334445556666777887777655544332 46899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHH
Q 020527 238 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV 317 (325)
Q Consensus 238 llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 317 (325)
++||||||++||+.+++.+.+.|+++. +|+|||++||+++.+..||++++|++|++++.|+++++......+++.+
T Consensus 160 llllDEP~~gLD~~~~~~l~~~l~~~~----~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 235 (238)
T cd03249 160 ILLLDEATSALDAESEKLVQEALDRAM----KGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKLV 235 (238)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhc----CCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcChhHHHHh
Confidence 999999999999999999999999884 3789999999999887899999999999999999998877665555554
No 69
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.6e-52 Score=374.46 Aligned_cols=230 Identities=53% Similarity=0.844 Sum_probs=197.5
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 159 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~ 159 (325)
|+++|++++|+++ ..++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4789999999753 136999999999999999999999999999999999999999999999999987666666778899
Q ss_pred EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCCC
Q 020527 160 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPA 237 (325)
Q Consensus 160 ~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p~ 237 (325)
|+||++.+|+.|++||+.++.. ...........+..++.++++.++.++.+... ...||||||||++|||||+.+|+
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 158 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRP-GATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPP 158 (234)
T ss_pred EeCCCCeeccccHHHHhhccCC-CCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999888899999988643 22334455566667788888887655554333 46899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHH
Q 020527 238 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAK 315 (325)
Q Consensus 238 llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~ 315 (325)
++||||||++||+.++..+.+.|+++. ++.|||++||+++.+..||++++|++|++++.|+++++......|+.
T Consensus 159 lllLDEP~~~LD~~~~~~l~~~l~~~~----~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~ 232 (234)
T cd03251 159 ILILDEATSALDTESERLVQAALERLM----KNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAK 232 (234)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhc----CCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCcchhh
Confidence 999999999999999999999999884 26799999999999877999999999999999999998776655543
No 70
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=2.9e-52 Score=398.92 Aligned_cols=216 Identities=31% Similarity=0.489 Sum_probs=188.4
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.|+++|++++|++. .+|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++|+++...+.. ++.+
T Consensus 14 ~L~l~~l~~~~~~~---~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 14 LVELRGISKSFDGK---EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred eEEEEEEEEEECCe---EEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 59999999999753 599999999999999999999999999999999999999999999999998765543 5789
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 020527 159 GFVGQEPQLL-QMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 232 (325)
Q Consensus 159 ~~v~Q~~~l~-~~tv~enl~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 232 (325)
+|+||++.+| .+||+||+.|+... ... .+++.++++..++.+++++.+ .+|||||||||+|||||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p---------~~LSgGq~QRVaLARaL 159 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP---------HQLSGGQQQRVAIARAV 159 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh---------hhCCHHHHHHHHHHHHH
Confidence 9999999998 57999999987421 111 223455666667766666655 57999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhhcC
Q 020527 233 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHKG 310 (325)
Q Consensus 233 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~~ 310 (325)
+.+|++|||||||++||+.++..+.+.|+++.++ .|.|+|+||||++++. .||+|++|++|++++.|++++++.+.
T Consensus 160 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~--~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p 236 (375)
T PRK09452 160 VNKPKVLLLDESLSALDYKLRKQMQNELKALQRK--LGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP 236 (375)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 9999999999999999999999999999999763 4889999999999875 59999999999999999999998753
No 71
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=2.7e-52 Score=396.84 Aligned_cols=215 Identities=30% Similarity=0.492 Sum_probs=184.8
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.|+++|++++|++. .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+. .++.|
T Consensus 2 ~L~i~~l~~~~~~~---~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 76 (353)
T PRK10851 2 SIEIANIKKSFGRT---QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKV 76 (353)
T ss_pred EEEEEEEEEEeCCe---EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCE
Confidence 38999999999753 59999999999999999999999999999999999999999999999999876543 35789
Q ss_pred EEEccCCcCcc-ccHHHHHhcCCCC-----CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 020527 159 GFVGQEPQLLQ-MDIKSNIMYGCPK-----DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 228 (325)
Q Consensus 159 ~~v~Q~~~l~~-~tv~enl~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 228 (325)
+|+||++.+|+ +||+||+.++... ... .+++.++++..++.++.++.+ .+|||||||||+|
T Consensus 77 ~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~LSgGq~QRval 147 (353)
T PRK10851 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP---------AQLSGGQKQRVAL 147 (353)
T ss_pred EEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh---------hhCCHHHHHHHHH
Confidence 99999999985 7999999986421 111 123444555555555544444 6799999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHh
Q 020527 229 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 307 (325)
Q Consensus 229 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 307 (325)
||||+.+|++|||||||++||+.++..+.+.|+++.++ .|.|+|+||||++++.. ||||++|++|++++.|++++++
T Consensus 148 ArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~--~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 148 ARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEE--LKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999753 47899999999999865 9999999999999999999998
Q ss_pred hc
Q 020527 308 HK 309 (325)
Q Consensus 308 ~~ 309 (325)
++
T Consensus 226 ~~ 227 (353)
T PRK10851 226 RE 227 (353)
T ss_pred hC
Confidence 65
No 72
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-52 Score=394.92 Aligned_cols=219 Identities=34% Similarity=0.526 Sum_probs=183.5
Q ss_pred EEEEEEEEECCCCC-CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHH---HHh
Q 020527 80 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLR 155 (325)
Q Consensus 80 i~~~~v~~~y~~~~-~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~---~~r 155 (325)
|+++||+|+|+... .+++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++..++.. .+|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997211 24699999999999999999999999999999999999999999999999998776543 346
Q ss_pred cceEEEccCCcCcc-ccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 020527 156 EKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 229 (325)
Q Consensus 156 ~~i~~v~Q~~~l~~-~tv~enl~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA 229 (325)
++|+|+||++.+|+ .||+||+.++.. ..... +.+.+.++..++.+..++.+ .+||||||||++||
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LSgGq~qRv~lA 152 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYP---------AQLSGGQKQRVAIA 152 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh---------hhCCHHHHHHHHHH
Confidence 78999999999884 899999987521 11111 22334444445444433332 67999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527 230 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 308 (325)
Q Consensus 230 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 308 (325)
|||+.+|++|||||||++||+.++..+.+.|+++.++ .|+|||++|||++.+.. ||++++|++|++++.|++++++.
T Consensus 153 raL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~--~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 153 RALASNPKVLLCDEATSALDPATTRSILELLKDINRE--LGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999998653 47899999999999865 99999999999999999999876
Q ss_pred c
Q 020527 309 K 309 (325)
Q Consensus 309 ~ 309 (325)
.
T Consensus 231 ~ 231 (343)
T PRK11153 231 H 231 (343)
T ss_pred C
Confidence 4
No 73
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.1e-52 Score=374.91 Aligned_cols=218 Identities=35% Similarity=0.578 Sum_probs=184.6
Q ss_pred ccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 020527 78 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 157 (325)
Q Consensus 78 ~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~ 157 (325)
..|+++|++++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.
T Consensus 2 ~~l~~~~l~~~~~~~---~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 78 (241)
T PRK14250 2 NEIEFKEVSYSSFGK---EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRK 78 (241)
T ss_pred ceEEEEeEEEEeCCe---eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhc
Confidence 458999999999643 59999999999999999999999999999999999999999999999999876666667788
Q ss_pred eEEEccCCcCccccHHHHHhcCCCCC-CCHHHHHHHHHHcCHH-HHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 020527 158 IGFVGQEPQLLQMDIKSNIMYGCPKD-VKNEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 235 (325)
Q Consensus 158 i~~v~Q~~~l~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~ 235 (325)
++|+||++.+|+.|++||+.++.... ....++.+.++..++. +..++ ...+||||||||++|||||+.+
T Consensus 79 i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 79 IGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATR---------DVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhC---------CcccCCHHHHHHHHHHHHHhcC
Confidence 99999999988889999998753211 1122333444444442 22222 2367999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhc
Q 020527 236 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 309 (325)
Q Consensus 236 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 309 (325)
|++|||||||++||+.+++.+.+.|++++++ .|.|||++|||++.+.. ||++++|++|++++.|++++++..
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNK--MNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN 222 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--CCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999998652 37899999999999865 999999999999999999998764
No 74
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-51 Score=372.21 Aligned_cols=233 Identities=51% Similarity=0.785 Sum_probs=201.5
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 159 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~ 159 (325)
++++|++++|++. ..+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4689999999642 35999999999999999999999999999999999999999999999999987766667778899
Q ss_pred EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCCC
Q 020527 160 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPA 237 (325)
Q Consensus 160 ~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p~ 237 (325)
|+||++.+|+.|++||+.++.. ......+....+..++.+.++.++.++.+... ...||||||||++|||||+.+|+
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ 157 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRP-DATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPP 157 (236)
T ss_pred EECCCChhhcchHHHHHhhcCC-CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999998999999988643 23344455666777888888888766665443 46899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHH
Q 020527 238 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV 317 (325)
Q Consensus 238 llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 317 (325)
++||||||++||+.++..+.+.|.+++ + |+|||++||+++.+..||++++|++|++++.|+++++......+..++
T Consensus 158 llllDEP~~~LD~~~~~~l~~~l~~~~---~-~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~~~~~ 233 (236)
T cd03253 158 ILLLDEATSALDTHTEREIQAALRDVS---K-GRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEMW 233 (236)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhc---C-CCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHHHHHH
Confidence 999999999999999999999999884 2 789999999999987799999999999999999999887666666655
Q ss_pred HH
Q 020527 318 KR 319 (325)
Q Consensus 318 ~~ 319 (325)
.+
T Consensus 234 ~~ 235 (236)
T cd03253 234 KA 235 (236)
T ss_pred hc
Confidence 43
No 75
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=2.5e-52 Score=390.61 Aligned_cols=215 Identities=27% Similarity=0.444 Sum_probs=179.9
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.++++||+|+|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+ ...+++|
T Consensus 7 ~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 7 PIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred eEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 5999999999974 36999999999999999999999999999999999999999999999999986543 4567889
Q ss_pred EEEccCCcCc-cccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 020527 159 GFVGQEPQLL-QMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 232 (325)
Q Consensus 159 ~~v~Q~~~l~-~~tv~enl~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 232 (325)
||+||++.++ .+|++||+.+... ..... .++.++++.+++.+..++ ....||||||||++|||||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~qrl~la~aL 153 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADA---------KVGELSGGMKRRLTLARAL 153 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcC---------chhhCCHHHHHHHHHHHHH
Confidence 9999999988 5899999975211 11111 122233333333332222 2257999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhc
Q 020527 233 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 309 (325)
Q Consensus 233 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 309 (325)
+++|++|||||||+|||+.++..+.++|+++++ +|+|||++||+++++.. ||||++|++|++++.|+++++...
T Consensus 154 ~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~---~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 154 VNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA---RGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred hCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh---CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 999999999999999999999999999999964 48899999999999965 999999999999999999998643
No 76
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.2e-53 Score=359.44 Aligned_cols=215 Identities=28% Similarity=0.471 Sum_probs=189.1
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
+|++.+++++|+.. .++++||||++++||++||+|||||||||+||+|++++.|++|.|+++|.+.... +...|++|
T Consensus 1 Ml~v~~l~K~y~~~--v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~-p~~vrr~I 77 (245)
T COG4555 1 MLEVTDLTKSYGSK--VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD-PSFVRRKI 77 (245)
T ss_pred CeeeeehhhhccCH--HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC-hHHHhhhc
Confidence 37899999999863 4699999999999999999999999999999999999999999999999998764 45678999
Q ss_pred EEEccCCcCc-cccHHHHHhcC-----CCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 020527 159 GFVGQEPQLL-QMDIKSNIMYG-----CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 232 (325)
Q Consensus 159 ~~v~Q~~~l~-~~tv~enl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 232 (325)
|.++-+..++ .+|++|||.|. ......+.++.+..+..++.+.+++.. .++|.|+||||+|||||
T Consensus 78 GVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv---------~~~S~G~kqkV~iARAl 148 (245)
T COG4555 78 GVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRV---------GEFSTGMKQKVAIARAL 148 (245)
T ss_pred ceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHH---------hhhchhhHHHHHHHHHH
Confidence 9999777787 79999999763 122223455667777788888777644 46999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhh
Q 020527 233 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLH 308 (325)
Q Consensus 233 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~ 308 (325)
+++|++++|||||||||..+.+.+.+.+.++++ .|++||++||.|++++ .||||+++++|+++..|+++++..
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~---egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN---EGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhc---CCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 999999999999999999999999999999975 4899999999999997 599999999999999999998864
No 77
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.6e-52 Score=384.72 Aligned_cols=220 Identities=31% Similarity=0.522 Sum_probs=181.1
Q ss_pred cEEEEEEEEECCCCC--CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCC--HHHH
Q 020527 79 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD--IRWL 154 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~--~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~--~~~~ 154 (325)
.|+++||+++|+... .+++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 389999999997421 136999999999999999999999999999999999999999999999999987643 3456
Q ss_pred hcceEEEccCC--cCccccHHHHHhcCCCC-CCCHH----HHHHHHHHcCHH--HHHHhCCCCcccccCCCCCChHHHHH
Q 020527 155 REKIGFVGQEP--QLLQMDIKSNIMYGCPK-DVKNE----DIEWAAKQAYVH--EFILSLPCGYETLVDDDLLSGGQKQR 225 (325)
Q Consensus 155 r~~i~~v~Q~~--~l~~~tv~enl~~~~~~-~~~~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~LSgGq~QR 225 (325)
+++|||+||++ .+|+.||+||+.++... ....+ .+.++++.+++. ++. .....+||||||||
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~---------~~~~~~LSgGq~qr 152 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYK---------DKSPFELSGGQKRR 152 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhc---------cCCcccCCHHHHHH
Confidence 78999999998 45678999999875211 11222 223333333332 111 22236799999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChH
Q 020527 226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA 304 (325)
Q Consensus 226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~ 304 (325)
++|||||+.+|++|||||||++||+.++..+.++|++++++ .|+|||++|||++.+. .||||++|++|++++.|+++
T Consensus 153 v~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~--~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~ 230 (287)
T PRK13637 153 VAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKE--YNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPR 230 (287)
T ss_pred HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999753 4789999999999885 59999999999999999999
Q ss_pred HHhhc
Q 020527 305 ELLHK 309 (325)
Q Consensus 305 ~l~~~ 309 (325)
++++.
T Consensus 231 ~~~~~ 235 (287)
T PRK13637 231 EVFKE 235 (287)
T ss_pred HHHhC
Confidence 88653
No 78
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-51 Score=369.99 Aligned_cols=224 Identities=48% Similarity=0.794 Sum_probs=195.0
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.|+++|++++|++. +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 2 ~l~~~~l~~~~~~~--~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 2 EIEFENVNFSYDEK--KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred eEEEEEEEEecCCC--CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 48999999999642 3599999999999999999999999999999999999999999999999998766666678889
Q ss_pred EEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCC
Q 020527 159 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDP 236 (325)
Q Consensus 159 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p 236 (325)
+|+||++.+|+.|++||+.+... ......+..+++..++.+++++++.++.+... ..+|||||||||+|||||+.+|
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p 158 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRP-NATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP 158 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCC-CCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999887899999987632 22345566667777888888887766554433 3689999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhc
Q 020527 237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK 309 (325)
Q Consensus 237 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 309 (325)
+++||||||++||+.+++.+.+.|.++. +++|||++||+++.+..||++++|++|++++.|+.+++.+.
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 159 KILILDEATSNIDTETEKLIQEALEKLM----KGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhc----CCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 9999999999999999999999999884 37899999999998877999999999999999988877643
No 79
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.3e-52 Score=375.53 Aligned_cols=215 Identities=35% Similarity=0.540 Sum_probs=178.2
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCC---HHHHhc
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD---IRWLRE 156 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~---~~~~r~ 156 (325)
++++||+++|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ ...+++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPNG--KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCCc--cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 4689999999751 35999999999999999999999999999999999999999999999999987655 345677
Q ss_pred ceEEEccCCcCcc-ccHHHHHhcCCCCC----------CC---HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHH
Q 020527 157 KIGFVGQEPQLLQ-MDIKSNIMYGCPKD----------VK---NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ 222 (325)
Q Consensus 157 ~i~~v~Q~~~l~~-~tv~enl~~~~~~~----------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq 222 (325)
.++|+||++.+|+ .||+||+.++.... .. .+.+.++++..++.+..++ ...+|||||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~ 149 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQ---------RADQLSGGQ 149 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCC---------CcccCCHHH
Confidence 8999999998875 79999998652110 00 1122233334443332222 236799999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEc
Q 020527 223 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVG 301 (325)
Q Consensus 223 ~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g 301 (325)
|||++|||||+.+|++|||||||++||+.++..+.+.|+++.++ .|+|||++|||++.+. .||++++|++|++++.|
T Consensus 150 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 150 QQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINRE--EGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 99999999999999999999999999999999999999998652 3789999999999987 59999999999999999
Q ss_pred ChHHHh
Q 020527 302 NHAELL 307 (325)
Q Consensus 302 ~~~~l~ 307 (325)
+++++.
T Consensus 228 ~~~~~~ 233 (241)
T cd03256 228 PPAELT 233 (241)
T ss_pred CHHHhh
Confidence 998864
No 80
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=2.9e-52 Score=397.44 Aligned_cols=215 Identities=28% Similarity=0.459 Sum_probs=184.7
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCC--CeEEECCEeCCCCCHHHHhc
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD--GQIYIDGFPLTDLDIRWLRE 156 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~--G~I~i~g~~i~~~~~~~~r~ 156 (325)
.|+++||+++|++. .+|+|+||+|++||+++|+|||||||||||++|+|+++|++ |+|.++|+++...+. .++
T Consensus 5 ~l~~~~l~~~~~~~---~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~r 79 (362)
T TIGR03258 5 GIRIDHLRVAYGAN---TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HKR 79 (362)
T ss_pred EEEEEEEEEEECCe---EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HHC
Confidence 58999999999753 59999999999999999999999999999999999999999 999999999876544 357
Q ss_pred ceEEEccCCcCc-cccHHHHHhcCCCC-CCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 020527 157 KIGFVGQEPQLL-QMDIKSNIMYGCPK-DVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 230 (325)
Q Consensus 157 ~i~~v~Q~~~l~-~~tv~enl~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 230 (325)
.|+|+||++.+| .+||+||+.|+... .... .++.++++..++.++.++.+ .+|||||||||+|||
T Consensus 80 ~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~---------~~LSgGq~QRvaLAR 150 (362)
T TIGR03258 80 GLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP---------AQLSGGMQQRIAIAR 150 (362)
T ss_pred CEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh---------hhCCHHHHHHHHHHH
Confidence 899999999998 57999999986421 1111 23444555555555554444 679999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCC-CeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhh
Q 020527 231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKT-KRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLH 308 (325)
Q Consensus 231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~-g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~ 308 (325)
||+.+|++|||||||++||+.++..+.+.|+++.++ . |.|+|+||||++++. .||||++|++|++++.|++++++.
T Consensus 151 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~--~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~ 228 (362)
T TIGR03258 151 AIAIEPDVLLLDEPLSALDANIRANMREEIAALHEE--LPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYD 228 (362)
T ss_pred HHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHh--CCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999998753 3 789999999999985 499999999999999999999987
Q ss_pred c
Q 020527 309 K 309 (325)
Q Consensus 309 ~ 309 (325)
.
T Consensus 229 ~ 229 (362)
T TIGR03258 229 A 229 (362)
T ss_pred C
Confidence 5
No 81
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=3.1e-52 Score=371.31 Aligned_cols=205 Identities=35% Similarity=0.560 Sum_probs=171.6
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHH---HHhc
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLRE 156 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~---~~r~ 156 (325)
|+++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. .+++
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 7899999999642 13599999999999999999999999999999999999999999999999988655432 3577
Q ss_pred ceEEEccCCcCcc-ccHHHHHhcCCCC-CC----CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 020527 157 KIGFVGQEPQLLQ-MDIKSNIMYGCPK-DV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 230 (325)
Q Consensus 157 ~i~~v~Q~~~l~~-~tv~enl~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 230 (325)
.++|+||++.+|+ .|++||+.++... .. ..+++.++++..++.+..++.+ .+||||||||++|||
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~lar 151 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP---------MQLSGGEQQRVAIAR 151 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh---------hhCCHHHHHHHHHHH
Confidence 8999999998884 7999999864210 11 1223444555555555444433 579999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEE
Q 020527 231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 297 (325)
Q Consensus 231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i 297 (325)
||+.+|++|||||||++||+.+++.+.+.|+++++ .|+|||++|||++.+.. ||++++|++|++
T Consensus 152 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 152 AIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR---RGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999864 37899999999999865 999999999974
No 82
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.4e-52 Score=384.18 Aligned_cols=218 Identities=25% Similarity=0.468 Sum_probs=180.3
Q ss_pred EEEEEEEEECCCCCC--CCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCC----CCHHH
Q 020527 80 VQFVNISFHYPSRPT--VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD----LDIRW 153 (325)
Q Consensus 80 i~~~~v~~~y~~~~~--~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~----~~~~~ 153 (325)
|+++||+|+|+.... +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.. .....
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 899999999974211 259999999999999999999999999999999999999999999999999853 22455
Q ss_pred HhcceEEEccCC--cCccccHHHHHhcCCCC-CCCHH----HHHHHHHHcCHH-HHHHhCCCCcccccCCCCCChHHHHH
Q 020527 154 LREKIGFVGQEP--QLLQMDIKSNIMYGCPK-DVKNE----DIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQR 225 (325)
Q Consensus 154 ~r~~i~~v~Q~~--~l~~~tv~enl~~~~~~-~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~LSgGq~QR 225 (325)
+++.+||+||++ .+|..||+||+.|+... ..... .+.++++.+++. ++.+ .....||||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~---------~~~~~LSgGqkqr 152 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWE---------KSPFELSGGQMRR 152 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhcc---------CCcccCCHHHHHH
Confidence 778999999998 67788999999886321 11111 223334444442 2222 2236799999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChH
Q 020527 226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA 304 (325)
Q Consensus 226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~ 304 (325)
++|||||+.+|++|||||||++||+.++..+.+.|+++++ +|.|||++|||++.+. .||||++|++|++++.|+++
T Consensus 153 vaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~---~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~ 229 (288)
T PRK13643 153 VAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ---SGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPS 229 (288)
T ss_pred HHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH---CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999999999864 3789999999999885 59999999999999999999
Q ss_pred HHhhc
Q 020527 305 ELLHK 309 (325)
Q Consensus 305 ~l~~~ 309 (325)
+++..
T Consensus 230 ~~~~~ 234 (288)
T PRK13643 230 DVFQE 234 (288)
T ss_pred HHHcC
Confidence 98754
No 83
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-52 Score=396.93 Aligned_cols=216 Identities=30% Similarity=0.480 Sum_probs=184.2
Q ss_pred ccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 020527 78 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 157 (325)
Q Consensus 78 ~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~ 157 (325)
..|+++|++++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. .++.
T Consensus 2 ~~l~i~~l~~~~~~~---~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~ 76 (369)
T PRK11000 2 ASVTLRNVTKAYGDV---VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERG 76 (369)
T ss_pred CEEEEEEEEEEeCCe---EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCC
Confidence 358999999999753 59999999999999999999999999999999999999999999999999876544 2467
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 020527 158 IGFVGQEPQLL-QMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 231 (325)
Q Consensus 158 i~~v~Q~~~l~-~~tv~enl~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 231 (325)
|+|+||++.+| .+||+||+.++... ... .+++.++++..++.++.++.+ .+|||||||||+||||
T Consensus 77 i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~---------~~LSgGq~QRvaLAra 147 (369)
T PRK11000 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP---------KALSGGQRQRVAIGRT 147 (369)
T ss_pred EEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh---------hhCCHHHHHHHHHHHH
Confidence 99999999998 47999999886321 111 123444555555555444443 5799999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhhc
Q 020527 232 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 309 (325)
Q Consensus 232 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~ 309 (325)
|+.+|++|||||||++||+.+++.+.+.|+++.++ .|.|+|+||||++++. .||++++|++|++++.|++++++..
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~--~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR--LGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH--hCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999999998753 4789999999999886 4999999999999999999998764
No 84
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.2e-52 Score=381.35 Aligned_cols=214 Identities=29% Similarity=0.506 Sum_probs=183.3
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.|+++|++++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+...++++|
T Consensus 4 ~l~~~~l~~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKDG--TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCCC--CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 48999999999632 3599999999999999999999999999999999999999999999999998776666777889
Q ss_pred EEEccCC--cCccccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 020527 159 GFVGQEP--QLLQMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 231 (325)
Q Consensus 159 ~~v~Q~~--~l~~~tv~enl~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 231 (325)
+|+||++ .++..||+||+.++... ... .+.+..+++.+++.+..++.+ .+||||||||++||||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~LSgG~~qrv~lara 152 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP---------YHLSYGQKKRVAIAGV 152 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh---------hhCCHHHHHHHHHHHH
Confidence 9999998 45678999999875311 111 123445556666655555444 5799999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHH
Q 020527 232 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAEL 306 (325)
Q Consensus 232 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l 306 (325)
|+.+|++|||||||++||+.++..+.+.|+++++ +|+|||++|||++.+. .|||+++|++|++++.|+++++
T Consensus 153 L~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 153 LAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN---QGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 9999999999999999999999999999999964 3789999999999985 5999999999999999998754
No 85
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8e-52 Score=384.70 Aligned_cols=221 Identities=28% Similarity=0.447 Sum_probs=181.3
Q ss_pred cEEEEEEEEECCCCC--CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCC----CCHH
Q 020527 79 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD----LDIR 152 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~--~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~----~~~~ 152 (325)
.++++||+++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ....
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 389999999996421 1369999999999999999999999999999999999999999999999999853 2344
Q ss_pred HHhcceEEEccCC--cCccccHHHHHhcCCCC-CCCHH----HHHHHHHHcCHH-HHHHhCCCCcccccCCCCCChHHHH
Q 020527 153 WLREKIGFVGQEP--QLLQMDIKSNIMYGCPK-DVKNE----DIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQ 224 (325)
Q Consensus 153 ~~r~~i~~v~Q~~--~l~~~tv~enl~~~~~~-~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~LSgGq~Q 224 (325)
..++.|||+||++ .+|+.||+||+.++... ..... .+.++++.+++. .+.++ ...+|||||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~---------~~~~LSgGq~q 152 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLAR---------SPFELSGGQMR 152 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhC---------CcccCCHHHHH
Confidence 5677899999997 56778999999876311 11121 223334444442 22222 23679999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcCh
Q 020527 225 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNH 303 (325)
Q Consensus 225 Rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~ 303 (325)
||+|||||+.+|++|||||||++||+.++..+.++|++++++ .|.|||++|||++.+. .||||++|++|++++.|++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~--~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~ 230 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKE--KGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTP 230 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999999653 4789999999999986 5999999999999999999
Q ss_pred HHHhhcC
Q 020527 304 AELLHKG 310 (325)
Q Consensus 304 ~~l~~~~ 310 (325)
++++...
T Consensus 231 ~~~~~~~ 237 (290)
T PRK13634 231 REIFADP 237 (290)
T ss_pred HHHhcCH
Confidence 9886543
No 86
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-51 Score=373.45 Aligned_cols=215 Identities=32% Similarity=0.502 Sum_probs=180.0
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++++
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i 76 (239)
T cd03296 2 SIEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNV 76 (239)
T ss_pred EEEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccce
Confidence 4899999999975 359999999999999999999999999999999999999999999999998865432 25679
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCCC-C----CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 020527 159 GFVGQEPQLL-QMDIKSNIMYGCPKD-V----KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 228 (325)
Q Consensus 159 ~~v~Q~~~l~-~~tv~enl~~~~~~~-~----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 228 (325)
+|+||++.+| ..||+||+.++.... . .. +.+.++++..++.+..++.+ .+||||||||++|
T Consensus 77 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~l 147 (239)
T cd03296 77 GFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP---------AQLSGGQRQRVAL 147 (239)
T ss_pred EEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh---------hhCCHHHHHHHHH
Confidence 9999999888 479999998753111 0 11 12233444445444433332 5799999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHh
Q 020527 229 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 307 (325)
Q Consensus 229 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 307 (325)
||||+.+|++|||||||++||+.+++.+.+.|.+++++ .|+|||++|||++.+.. ||++++|++|++++.|+++++.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (239)
T cd03296 148 ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDE--LHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVY 225 (239)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHh
Confidence 99999999999999999999999999999999998652 37899999999998764 9999999999999999999987
Q ss_pred hc
Q 020527 308 HK 309 (325)
Q Consensus 308 ~~ 309 (325)
+.
T Consensus 226 ~~ 227 (239)
T cd03296 226 DH 227 (239)
T ss_pred cC
Confidence 54
No 87
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-51 Score=387.93 Aligned_cols=224 Identities=29% Similarity=0.461 Sum_probs=181.3
Q ss_pred cEEEEEEEEECCCCC--CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCC-------
Q 020527 79 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL------- 149 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~--~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~------- 149 (325)
.|+++|++|+|++.. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++...
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence 499999999997421 13599999999999999999999999999999999999999999999999988542
Q ss_pred ---------CHHHHhcceEEEccCC--cCccccHHHHHhcCCCC-CCCHHHHHHHHHHcCHHHHHHhCCCC-cccccCCC
Q 020527 150 ---------DIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCPK-DVKNEDIEWAAKQAYVHEFILSLPCG-YETLVDDD 216 (325)
Q Consensus 150 ---------~~~~~r~~i~~v~Q~~--~l~~~tv~enl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 216 (325)
....+|++|+|+||++ .+|+.||+||+.++... ....+... + .+.++++.+... ........
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~---~--~~~~~l~~~gL~~~~~~~~~~ 175 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAK---K--LAKFYLNKMGLDDSYLERSPF 175 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHH---H--HHHHHHHHcCCChhHhcCCcc
Confidence 2345788999999998 57788999999886311 11222111 1 112333433321 11122346
Q ss_pred CCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCC
Q 020527 217 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDG 295 (325)
Q Consensus 217 ~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G 295 (325)
+||||||||++|||||+.+|++|||||||++||+.++..+.+.|.++.+ +|+|||+||||++.+. .||||++|++|
T Consensus 176 ~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~---~g~TiiivtHd~~~~~~~adri~vl~~G 252 (320)
T PRK13631 176 GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA---NNKTVFVITHTMEHVLEVADEVIVMDKG 252 (320)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH---CCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 7999999999999999999999999999999999999999999999864 3789999999999875 59999999999
Q ss_pred EEEEEcChHHHhhcC
Q 020527 296 RIIEVGNHAELLHKG 310 (325)
Q Consensus 296 ~i~~~g~~~~l~~~~ 310 (325)
++++.|++++++...
T Consensus 253 ~i~~~g~~~~~~~~~ 267 (320)
T PRK13631 253 KILKTGTPYEIFTDQ 267 (320)
T ss_pred EEEEeCCHHHHhcCH
Confidence 999999999886543
No 88
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=6.6e-52 Score=385.04 Aligned_cols=216 Identities=31% Similarity=0.517 Sum_probs=184.0
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.++++||+++|+.+ +.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+...- ....+++|
T Consensus 4 ~i~~~~l~k~~~~~--~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGGD--KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCCC--CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 48899999999831 3699999999999999999999999999999999999999999999999998654 56678899
Q ss_pred EEEccCCcCc-cccHHHHHhcCCC-C----CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 020527 159 GFVGQEPQLL-QMDIKSNIMYGCP-K----DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 232 (325)
Q Consensus 159 ~~v~Q~~~l~-~~tv~enl~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 232 (325)
||+||++.++ .+|++||+.|... . ....+.+.+.++.+++.+.. ......||+|||||++||+||
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~---------~~~~~~lS~G~kqrl~ia~aL 151 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA---------NKKVRTLSGGMKQRLSIALAL 151 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh---------CcchhhcCHHHHHHHHHHHHH
Confidence 9999999987 5899999976321 1 11234555666666655422 111257999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527 233 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 308 (325)
Q Consensus 233 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 308 (325)
+.+|+++||||||+||||.++..+.++|++++++ .++||+++||.++.+.. ||+|++|++|+++..|+++++..
T Consensus 152 ~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~--g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~ 226 (293)
T COG1131 152 LHDPELLILDEPTSGLDPESRREIWELLRELAKE--GGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226 (293)
T ss_pred hcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhC--CCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 9999999999999999999999999999999864 24899999999999976 99999999999999999988754
No 89
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=9.7e-52 Score=374.39 Aligned_cols=215 Identities=34% Similarity=0.494 Sum_probs=178.6
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCH---HHHhc
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI---RWLRE 156 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~---~~~r~ 156 (325)
|+++||+++|+.+ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++
T Consensus 2 l~~~~l~~~~~~~--~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPNG--KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCCC--cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 7899999999721 369999999999999999999999999999999999999999999999999865543 23577
Q ss_pred ceEEEccCCcCc-cccHHHHHhcCCCCC-------------CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHH
Q 020527 157 KIGFVGQEPQLL-QMDIKSNIMYGCPKD-------------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ 222 (325)
Q Consensus 157 ~i~~v~Q~~~l~-~~tv~enl~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq 222 (325)
.++|+||++.+| ..|++||+.++.... ...+++.++++..++.+.+++. ..+|||||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LSgG~ 150 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQR---------ADQLSGGQ 150 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC---------cccCCHHH
Confidence 899999999887 479999998753210 0011233344444444433332 25799999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEc
Q 020527 223 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVG 301 (325)
Q Consensus 223 ~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g 301 (325)
|||++|||||+.+|++|||||||++||+.++..+.+.|+++.++ .|+|+|++|||++.+. .||++++|++|++++.|
T Consensus 151 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 151 QQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKE--DGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999998652 3789999999999985 59999999999999999
Q ss_pred ChHHHh
Q 020527 302 NHAELL 307 (325)
Q Consensus 302 ~~~~l~ 307 (325)
+++++.
T Consensus 229 ~~~~~~ 234 (243)
T TIGR02315 229 APSELD 234 (243)
T ss_pred CHHHhC
Confidence 998863
No 90
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=6.2e-52 Score=372.13 Aligned_cols=212 Identities=33% Similarity=0.561 Sum_probs=176.7
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCC-----CCCCCeEEECCEeCCCCC--HH
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY-----EPSDGQIYIDGFPLTDLD--IR 152 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~-----~~~~G~I~i~g~~i~~~~--~~ 152 (325)
|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|+++...+ ..
T Consensus 1 i~~~~l~~~~~~~---~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGDK---HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCCc---eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 4789999999753 5999999999999999999999999999999999999 999999999999987655 44
Q ss_pred HHhcceEEEccCCcCccccHHHHHhcCCCCC-C-C----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHH
Q 020527 153 WLREKIGFVGQEPQLLQMDIKSNIMYGCPKD-V-K----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 226 (325)
Q Consensus 153 ~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~-~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv 226 (325)
.++++++|+||++.+|..||+||+.++.... . . .+.+.++++..++.+...+.+ ...+||||||||+
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-------~~~~LSgG~~qrv 150 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRL-------HALGLSGGQQQRL 150 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccC-------CcccCCHHHHHHH
Confidence 5678899999999888889999998752111 1 1 122334444444444333221 0257999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHH
Q 020527 227 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAE 305 (325)
Q Consensus 227 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~ 305 (325)
+|||||+.+|++|||||||++||+.++..+.+.|+++++ + +|||++|||++.+. .||++++|++|++++.|++++
T Consensus 151 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 151 CLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK---E-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh---C-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 999999999999999999999999999999999999864 3 79999999999886 499999999999999998765
No 91
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.7e-52 Score=396.16 Aligned_cols=217 Identities=27% Similarity=0.471 Sum_probs=184.7
Q ss_pred ccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 020527 78 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 157 (325)
Q Consensus 78 ~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~ 157 (325)
..|+++|++++|++ ..+|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++|+++...+. .++.
T Consensus 18 ~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 92 (377)
T PRK11607 18 PLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRP 92 (377)
T ss_pred ceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCC
Confidence 35999999999974 359999999999999999999999999999999999999999999999999876543 3678
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCCC-CCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 020527 158 IGFVGQEPQLL-QMDIKSNIMYGCPK-DVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 231 (325)
Q Consensus 158 i~~v~Q~~~l~-~~tv~enl~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 231 (325)
|||+||++.+| .+||+||+.|+... .... +++.+.++..++.++.++.+ .+|||||||||+||||
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~---------~~LSgGq~QRVaLARA 163 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP---------HQLSGGQRQRVALARS 163 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHHHHH
Confidence 99999999999 47999999987421 1111 22334444445544444433 6799999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhhcC
Q 020527 232 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHKG 310 (325)
Q Consensus 232 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~~ 310 (325)
|+.+|++|||||||++||+..+..+.+.++++.++ .|.|+|+||||++++. .|||+++|++|++++.|++++++.+.
T Consensus 164 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p 241 (377)
T PRK11607 164 LAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILER--VGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP 241 (377)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999999999988653 4789999999999875 59999999999999999999998753
No 92
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-51 Score=382.97 Aligned_cols=224 Identities=29% Similarity=0.524 Sum_probs=180.6
Q ss_pred EEEEEEEEECCCCC--CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCC----CHHH
Q 020527 80 VQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL----DIRW 153 (325)
Q Consensus 80 i~~~~v~~~y~~~~--~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~----~~~~ 153 (325)
++++||+++|+++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 89999999996421 13699999999999999999999999999999999999999999999999998643 2345
Q ss_pred HhcceEEEccCC--cCccccHHHHHhcCCCC-CCCHHHHHHHHHHcCHHHHHHhCCCC-cccccCCCCCChHHHHHHHHH
Q 020527 154 LREKIGFVGQEP--QLLQMDIKSNIMYGCPK-DVKNEDIEWAAKQAYVHEFILSLPCG-YETLVDDDLLSGGQKQRIAIA 229 (325)
Q Consensus 154 ~r~~i~~v~Q~~--~l~~~tv~enl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~LSgGq~QRv~iA 229 (325)
+|++|||+||++ .+|+.|++||+.++... ......... .+.++++.+... ........+||||||||++||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~la 157 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKN-----YAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIV 157 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHH-----HHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHH
Confidence 788999999997 46778999999875211 112211111 122333333221 011122467999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhh
Q 020527 230 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLH 308 (325)
Q Consensus 230 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~ 308 (325)
|||+.+|++|||||||++||+.++..+.+++++++++ .|+|||++|||++.+. .||||++|++|++++.|++++++.
T Consensus 158 raL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 158 SILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTD--ENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh--CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999652 4789999999999885 599999999999999999998876
Q ss_pred cC
Q 020527 309 KG 310 (325)
Q Consensus 309 ~~ 310 (325)
..
T Consensus 236 ~~ 237 (286)
T PRK13646 236 DK 237 (286)
T ss_pred CH
Confidence 53
No 93
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-51 Score=368.99 Aligned_cols=212 Identities=26% Similarity=0.422 Sum_probs=178.1
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 159 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~ 159 (325)
|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++
T Consensus 1 i~~~~~~~~~~~~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGDF---EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECCE---EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence 4789999999753 599999999999999999999999999999999999999999999999987642 345677899
Q ss_pred EEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 020527 160 FVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 233 (325)
Q Consensus 160 ~v~Q~~~l~~-~tv~enl~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 233 (325)
|+||++.+++ .|++||+.++.. .... .+.+.+.++..++.+..++.+ .+||||||||++||||++
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qr~~la~al~ 147 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLV---------KTYSGGMRRRLEIARSLV 147 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh---------hhCCHHHHHHHHHHHHHh
Confidence 9999998874 799999976421 0111 223445555566655444433 579999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHH
Q 020527 234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL 306 (325)
Q Consensus 234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l 306 (325)
.+|+++||||||++||+.+++.+.+.|.++.++ .|+|||++|||++.+.. |||+++|++|++++.++++++
T Consensus 148 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 148 HRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEE--FGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred cCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999999999999999998753 37899999999999865 999999999999999887753
No 94
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=9e-52 Score=373.05 Aligned_cols=224 Identities=26% Similarity=0.434 Sum_probs=178.2
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHH-hcce
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REKI 158 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~-r~~i 158 (325)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ ++.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 468999999974 359999999999999999999999999999999999999999999999999877665443 5679
Q ss_pred EEEccCCcCcc-ccHHHHHhcCCCCCCCHHH------HHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 020527 159 GFVGQEPQLLQ-MDIKSNIMYGCPKDVKNED------IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 231 (325)
Q Consensus 159 ~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 231 (325)
+|+||++.+|+ .||+||+.++......... .........+.++++.+...........+||||||||++||||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~a 157 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARA 157 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHH
Confidence 99999999885 6999999875321100000 0000001122334444332211122236799999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhc
Q 020527 232 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 309 (325)
Q Consensus 232 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 309 (325)
|+.+|+++||||||++||+.++..+.+.|+++++ +|+|+|++|||++.+.. ||++++|++|++++.|+++++.+.
T Consensus 158 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 233 (236)
T cd03219 158 LATDPKLLLLDEPAAGLNPEETEELAELIRELRE---RGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNN 233 (236)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhccC
Confidence 9999999999999999999999999999999864 37899999999999865 999999999999999999887653
No 95
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=8.8e-51 Score=371.53 Aligned_cols=238 Identities=32% Similarity=0.533 Sum_probs=206.0
Q ss_pred CcccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHh
Q 020527 76 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 155 (325)
Q Consensus 76 ~~~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r 155 (325)
.++.|+++|++++|+.. ...+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+...++
T Consensus 16 ~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 16 LGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94 (257)
T ss_pred CCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence 45679999999999753 24699999999999999999999999999999999999999999999999998877766778
Q ss_pred cceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHc
Q 020527 156 EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAIL 233 (325)
Q Consensus 156 ~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~ 233 (325)
+.|+|+||++.+|+.|++||+.... ......+..+.+..++.++++.++.++++... ..+|||||+||++|||||+
T Consensus 95 ~~i~~v~q~~~l~~~tv~~nl~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 172 (257)
T cd03288 95 SRLSIILQDPILFSGSIRFNLDPEC--KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFV 172 (257)
T ss_pred hhEEEECCCCcccccHHHHhcCcCC--CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHh
Confidence 8999999999988889999987531 12244556677777888888888777766554 3689999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhc-CHH
Q 020527 234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK-GRL 312 (325)
Q Consensus 234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~ 312 (325)
.+|++|||||||++||+.++..+.+.++++. +++|+|++||+++.+..|||+++|++|++++.|+++++... ...
T Consensus 173 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~----~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~ 248 (257)
T cd03288 173 RKSSILIMDEATASIDMATENILQKVVMTAF----ADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGV 248 (257)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHhc----CCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchH
Confidence 9999999999999999999999999998873 36899999999999877999999999999999999998765 456
Q ss_pred HHHHHHHh
Q 020527 313 YAKLVKRQ 320 (325)
Q Consensus 313 ~~~~~~~~ 320 (325)
|++++..+
T Consensus 249 ~~~~~~~~ 256 (257)
T cd03288 249 FASLVRTD 256 (257)
T ss_pred HHHHHhcc
Confidence 77777653
No 96
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-51 Score=379.28 Aligned_cols=219 Identities=34% Similarity=0.560 Sum_probs=187.0
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.++++||+++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.|
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 48999999999642 24699999999999999999999999999999999999999999999999999776666677889
Q ss_pred EEEccCCc--CccccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 020527 159 GFVGQEPQ--LLQMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 231 (325)
Q Consensus 159 ~~v~Q~~~--l~~~tv~enl~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 231 (325)
+|+||++. ++..||+||+.++... ... .+.+.++++..++.+++++.+ ..||||||||++||||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LS~G~~qrv~lara 154 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP---------HRLSGGQKQRVAIAGV 154 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc---------ccCCHHHHHHHHHHHH
Confidence 99999983 4478999999875211 111 123455566666666655544 5799999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhc
Q 020527 232 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK 309 (325)
Q Consensus 232 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 309 (325)
|+.+|++|||||||++||+.++..+.+.|+++.++ .|.|||++|||++.+..||++++|++|++++.|+++++...
T Consensus 155 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~--~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 155 LALQPDIIILDEATSMLDPRGRREVLETVRQLKEQ--KGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999999999753 37899999999998877999999999999999999887654
No 97
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=5.3e-52 Score=395.04 Aligned_cols=208 Identities=38% Similarity=0.508 Sum_probs=179.9
Q ss_pred ECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHH----hcceEEEcc
Q 020527 88 HYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL----REKIGFVGQ 163 (325)
Q Consensus 88 ~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~----r~~i~~v~Q 163 (325)
+|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+...+ |+.|+|+||
T Consensus 2 ~~~~---~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q 78 (363)
T TIGR01186 2 KTGG---KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQ 78 (363)
T ss_pred ccCC---ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEEC
Confidence 4554 359999999999999999999999999999999999999999999999999988777665 678999999
Q ss_pred CCcCcc-ccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC
Q 020527 164 EPQLLQ-MDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 237 (325)
Q Consensus 164 ~~~l~~-~tv~enl~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ 237 (325)
++.+|+ +||+||+.++... ... .+++.++++.++++.+.++.+ .+|||||||||+|||||+.+|+
T Consensus 79 ~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p---------~~LSGGq~QRV~lARAL~~~p~ 149 (363)
T TIGR01186 79 QFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYP---------DELSGGMQQRVGLARALAAEPD 149 (363)
T ss_pred CCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCCh---------hhCCHHHHHHHHHHHHHhcCCC
Confidence 999995 7999999875321 111 233455666666666655555 5799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhhc
Q 020527 238 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 309 (325)
Q Consensus 238 llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~ 309 (325)
+|||||||++||+.++..+.+.+.+++++ .|+|||+||||++++. .||||++|++|++++.|++++++.+
T Consensus 150 iLLlDEP~saLD~~~r~~l~~~l~~l~~~--~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 150 ILLMDEAFSALDPLIRDSMQDELKKLQAT--LQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 99999999999999999999999999653 4789999999999875 5999999999999999999998765
No 98
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-51 Score=378.02 Aligned_cols=219 Identities=29% Similarity=0.486 Sum_probs=185.2
Q ss_pred ccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 020527 78 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 157 (325)
Q Consensus 78 ~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~ 157 (325)
..++++|++++|++. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...++++
T Consensus 2 ~~l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 79 (277)
T PRK13652 2 HLIETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKF 79 (277)
T ss_pred ceEEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhh
Confidence 358999999999642 359999999999999999999999999999999999999999999999999876555667788
Q ss_pred eEEEccCCc--CccccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 020527 158 IGFVGQEPQ--LLQMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 230 (325)
Q Consensus 158 i~~v~Q~~~--l~~~tv~enl~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 230 (325)
++|+||++. ++..||+||+.++.. ..... +.+.++++..++.+.+++.+ ..||||||||++|||
T Consensus 80 i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~Gq~qrl~lar 150 (277)
T PRK13652 80 VGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP---------HHLSGGEKKRVAIAG 150 (277)
T ss_pred eEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc---------ccCCHHHHHHHHHHH
Confidence 999999984 567899999986421 11122 22344555555555544443 579999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhhc
Q 020527 231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 309 (325)
Q Consensus 231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~ 309 (325)
||+.+|++|||||||++||+.++..+.+.++++.++ .|.|||++||+++.+. .|||+++|++|++++.|++++++..
T Consensus 151 aL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~--~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPET--YGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 999999999999999999999999999999998753 3789999999999985 5999999999999999999998754
No 99
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.1e-52 Score=367.90 Aligned_cols=206 Identities=35% Similarity=0.563 Sum_probs=171.7
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 159 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~ 159 (325)
++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. .+++++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEE
Confidence 468999999964 369999999999999999999999999999999999999999999999999865432 357899
Q ss_pred EEccCCcCc-cccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 020527 160 FVGQEPQLL-QMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 233 (325)
Q Consensus 160 ~v~Q~~~l~-~~tv~enl~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 233 (325)
|+||++.++ ..|++||+.++... ... .+.+.++++..++.+..++.+ .+||||||||++|||||+
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrl~la~al~ 146 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYP---------HELSGGQQQRVALARALA 146 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCh---------hhCCHHHHHHHHHHHHHh
Confidence 999999887 57999999864211 111 122334445555544444333 579999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEc
Q 020527 234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 301 (325)
Q Consensus 234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g 301 (325)
.+|++|||||||++||+.++..+.+.|.+++++ .|+|||++|||++.+.. ||++++|++|++++.|
T Consensus 147 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 147 REPSLLLLDEPLSALDAKLREELREELKELQRE--LGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH--cCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999998652 37899999999998865 9999999999998754
No 100
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-51 Score=384.04 Aligned_cols=220 Identities=27% Similarity=0.435 Sum_probs=181.0
Q ss_pred cEEEEEEEEECCCCC--CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCC--------
Q 020527 79 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD-------- 148 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~--~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~-------- 148 (325)
.|+++||+++|+++. ...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 489999999997431 1259999999999999999999999999999999999999999999999876531
Q ss_pred ----------------CCHHHHhcceEEEccCC--cCccccHHHHHhcCCCC-CCCH----HHHHHHHHHcCHH-HHHHh
Q 020527 149 ----------------LDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCPK-DVKN----EDIEWAAKQAYVH-EFILS 204 (325)
Q Consensus 149 ----------------~~~~~~r~~i~~v~Q~~--~l~~~tv~enl~~~~~~-~~~~----~~~~~~~~~~~~~-~~~~~ 204 (325)
.....++++|||+||+| .+|..||+||+.|+... .... +++.++++.+++. ++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~ 161 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR 161 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence 12345678899999986 56778999999886321 1122 2234444444543 33333
Q ss_pred CCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH
Q 020527 205 LPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK 284 (325)
Q Consensus 205 ~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~ 284 (325)
. ..+||||||||++|||||+.+|++|||||||++||+.++..+.+.|+++++ .|+|||+||||++.+.
T Consensus 162 ~---------~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tiiivtHd~~~~~ 229 (305)
T PRK13651 162 S---------PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK---QGKTIILVTHDLDNVL 229 (305)
T ss_pred C---------hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeeCHHHHH
Confidence 2 367999999999999999999999999999999999999999999999974 4889999999999875
Q ss_pred -hcCEEEEEeCCEEEEEcChHHHhhcC
Q 020527 285 -AVDRIVVIDDGRIIEVGNHAELLHKG 310 (325)
Q Consensus 285 -~~d~v~~l~~G~i~~~g~~~~l~~~~ 310 (325)
.||||++|++|++++.|++++++...
T Consensus 230 ~~adrv~vl~~G~i~~~g~~~~~~~~~ 256 (305)
T PRK13651 230 EWTKRTIFFKDGKIIKDGDTYDILSDN 256 (305)
T ss_pred HhCCEEEEEECCEEEEECCHHHHhcCH
Confidence 59999999999999999999987653
No 101
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=1.7e-51 Score=389.61 Aligned_cols=214 Identities=27% Similarity=0.459 Sum_probs=178.8
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.|+++||+++|+++ .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.... ...++.|
T Consensus 41 ~i~i~nl~k~y~~~---~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYGDK---AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEECCE---EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 59999999999753 5999999999999999999999999999999999999999999999999986543 4567889
Q ss_pred EEEccCCcCc-cccHHHHHhcCC-CCCCCHH----HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 020527 159 GFVGQEPQLL-QMDIKSNIMYGC-PKDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 232 (325)
Q Consensus 159 ~~v~Q~~~l~-~~tv~enl~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 232 (325)
||+||++.++ ..|++||+.+.. ....... .+.++++.+++.+.. .....+||||||||++|||||
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~---------~~~~~~LS~G~kqrv~lA~aL 187 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKA---------DARVSDLSGGMKRRLTLARAL 187 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh---------CCChhhCCHHHHHHHHHHHHH
Confidence 9999999887 689999997521 1111111 122223333332222 222357999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527 233 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 308 (325)
Q Consensus 233 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 308 (325)
+.+|++|||||||+|||+.++..+.++|+++++ .|+|||++||+++.+.. ||||++|++|+++..|+++++.+
T Consensus 188 ~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~---~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 188 INDPQLLILDEPTTGLDPHARHLIWERLRSLLA---RGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999964 38899999999999965 99999999999999999999864
No 102
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-51 Score=369.75 Aligned_cols=218 Identities=32% Similarity=0.499 Sum_probs=181.2
Q ss_pred EEEEEEEEECCCCC-CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHH---HHh
Q 020527 80 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLR 155 (325)
Q Consensus 80 i~~~~v~~~y~~~~-~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~---~~r 155 (325)
|+++|++++|+++. ..++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999997531 12699999999999999999999999999999999999999999999999998765432 346
Q ss_pred cceEEEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 020527 156 EKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 229 (325)
Q Consensus 156 ~~i~~v~Q~~~l~~-~tv~enl~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA 229 (325)
+.++|+||++.+|+ .|++||+.++.. .... .+.+.++++..++.+..++.+ .+||||||||++||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la 152 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYP---------AQLSGGQKQRVGIA 152 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcCh---------hhCCHHHHHHHHHH
Confidence 78999999999885 799999976421 1111 122334455555544443333 57999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527 230 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 308 (325)
Q Consensus 230 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 308 (325)
|||+.+|+++||||||++||+.++..+.+.|++++++ .|+|||++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 153 ~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 153 RALANNPKVLLCDEATSALDPETTQSILALLRDINRE--LGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999999999999999998653 37899999999999865 99999999999999999888754
No 103
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=3.3e-51 Score=386.48 Aligned_cols=226 Identities=29% Similarity=0.439 Sum_probs=185.2
Q ss_pred cEEEEEEEEECCCCC----------CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCC
Q 020527 79 HVQFVNISFHYPSRP----------TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD 148 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~----------~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~ 148 (325)
.|+++||+++|+... ...+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|+++..
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 499999999996311 2469999999999999999999999999999999999999999999999999987
Q ss_pred CCHH---HHhcceEEEccCC--cCc-cccHHHHHhcCCCC---CCCHH----HHHHHHHHcCH-HHHHHhCCCCcccccC
Q 020527 149 LDIR---WLREKIGFVGQEP--QLL-QMDIKSNIMYGCPK---DVKNE----DIEWAAKQAYV-HEFILSLPCGYETLVD 214 (325)
Q Consensus 149 ~~~~---~~r~~i~~v~Q~~--~l~-~~tv~enl~~~~~~---~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 214 (325)
.+.. .+|++|+||||++ .++ .+||.||+.++... ....+ .+.+.++.+++ .+.+++.
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~--------- 158 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRY--------- 158 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCC---------
Confidence 6543 3567899999998 466 58999999753210 11221 22334444444 2233333
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEe
Q 020527 215 DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID 293 (325)
Q Consensus 215 ~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~ 293 (325)
+.+|||||||||+|||||+.+|++||+||||++||+.++.+++++|++++++ .|.|+|+||||++.+.. ||||++|+
T Consensus 159 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~--~~~til~iTHdl~~~~~~~dri~vl~ 236 (331)
T PRK15079 159 PHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQRE--MGLSLIFIAHDLAVVKHISDRVLVMY 236 (331)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 3679999999999999999999999999999999999999999999999753 47899999999999975 99999999
Q ss_pred CCEEEEEcChHHHhhc-CHHHHH
Q 020527 294 DGRIIEVGNHAELLHK-GRLYAK 315 (325)
Q Consensus 294 ~G~i~~~g~~~~l~~~-~~~~~~ 315 (325)
+|++++.|++++++++ ...|.+
T Consensus 237 ~G~ive~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 237 LGHAVELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred CCEEEEEcCHHHHHcCCCCHHHH
Confidence 9999999999999865 334544
No 104
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-51 Score=378.90 Aligned_cols=218 Identities=28% Similarity=0.495 Sum_probs=182.9
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCC--CCCHHHHhc
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT--DLDIRWLRE 156 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~--~~~~~~~r~ 156 (325)
.|+++|++++|++. +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+++
T Consensus 5 ~l~~~~l~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSDG--THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 48999999999632 36999999999999999999999999999999999999999999999999984 223456778
Q ss_pred ceEEEccCC--cCccccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 020527 157 KIGFVGQEP--QLLQMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 229 (325)
Q Consensus 157 ~i~~v~Q~~--~l~~~tv~enl~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA 229 (325)
.++|+||++ .+++.|++||+.++... ... .+.+..+++..++.++.++. ..+||||||||++||
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~---------~~~LS~G~~qrl~la 153 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKP---------THCLSFGQKKRVAIA 153 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCC---------cccCCHHHHHHHHHH
Confidence 999999998 45678999999874211 111 12334455555555444333 267999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhh
Q 020527 230 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLH 308 (325)
Q Consensus 230 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~ 308 (325)
|||+.+|++|||||||++||+.++..+.+.|+++.++ .|+|||++|||++.+. .|||+++|++|++++.|+++++++
T Consensus 154 raL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~--~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 154 GVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKE--LGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh--CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999998753 3789999999999986 599999999999999999998876
Q ss_pred c
Q 020527 309 K 309 (325)
Q Consensus 309 ~ 309 (325)
.
T Consensus 232 ~ 232 (283)
T PRK13636 232 E 232 (283)
T ss_pred C
Confidence 4
No 105
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=3.4e-51 Score=365.88 Aligned_cols=214 Identities=29% Similarity=0.462 Sum_probs=175.7
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHH-Hhcce
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREKI 158 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~-~r~~i 158 (325)
|+++||+++|++. ++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 1 l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGKS---QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCCe---eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 4789999999753 5999999999999999999999999999999999999999999999999987665544 35679
Q ss_pred EEEccCCcCcc-ccHHHHHhcCCCCCCC---HHHHHHHHHHc-CHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 020527 159 GFVGQEPQLLQ-MDIKSNIMYGCPKDVK---NEDIEWAAKQA-YVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 233 (325)
Q Consensus 159 ~~v~Q~~~l~~-~tv~enl~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 233 (325)
+|+||++.+|+ .|++||+.++...... .+.+...++.. ++.+..++ ...+||||||||++|||||+
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~---------~~~~LS~G~~qrv~laral~ 148 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQ---------LAGTLSGGEQQMLAIARALM 148 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhC---------chhhCCHHHHHHHHHHHHHh
Confidence 99999998885 6999999875321111 11122222222 12222221 22579999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527 234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 308 (325)
Q Consensus 234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 308 (325)
.+|++|||||||++||+.++..+.+.|+++++ .|+|+|++|||++.+.. ||++++|++|++++.|+++++..
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 149 SRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD---EGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 99999999999999999999999999999864 37899999999998865 99999999999999998887643
No 106
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=8.3e-51 Score=363.26 Aligned_cols=217 Identities=38% Similarity=0.617 Sum_probs=192.3
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.|+++|++++|++. .+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 2 DIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred cEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 48899999999743 24699999999999999999999999999999999999999999999999998777767778899
Q ss_pred EEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCC
Q 020527 159 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDP 236 (325)
Q Consensus 159 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p 236 (325)
+|+||++.+++.|++||+.+.. ....+++.++++..++.+++.+++.++.+... ...||||||||++|||||+.+|
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p 158 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFG--EYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS 158 (221)
T ss_pred EEECCCCccccchHHHHhCcCC--CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 9999999988889999997642 23455667778888888888888777776554 4689999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcC
Q 020527 237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGN 302 (325)
Q Consensus 237 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~ 302 (325)
+++||||||++||+.++..+.+.|+++.+ +.|+|++||+++.+..||++++|++|++++.|+
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~----~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 159 KILVLDEATASVDPETDALIQKTIREAFK----DCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcC----CCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 99999999999999999999999998842 579999999999987799999999999998775
No 107
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.7e-51 Score=355.04 Aligned_cols=226 Identities=27% Similarity=0.438 Sum_probs=187.7
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHH-Hhcc
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREK 157 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~-~r~~ 157 (325)
+++++||+..|+. .++|++|||++++||+++|+||||||||||||+|+|+.+|.+|+|.|+|+|+...++.+ .|..
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 5899999999975 36999999999999999999999999999999999999999999999999999987764 4778
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCC-cccccCCCCCChHHHHHHHHHHHHcCC
Q 020527 158 IGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCG-YETLVDDDLLSGGQKQRIAIARAILRD 235 (325)
Q Consensus 158 i~~v~Q~~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~LSgGq~QRv~iAral~~~ 235 (325)
|+||||...+| .+||+||+.+|......+.. ....+++..+.+|.- ........+|||||||.++|||||+.+
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~-----~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEA-----QERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhccccccc-----ccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 99999999999 68999999987432111111 001123333333310 111112367999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhhcCHHHH
Q 020527 236 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHKGRLYA 314 (325)
Q Consensus 236 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~ 314 (325)
|++|+|||||.||-|.-.++|.+.+++++++ .|.||++|-++...+. .+||.++|++|+|+.+|+.+++.+++..-+
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~--~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~~v~~ 232 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKE--GGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPDVRE 232 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHc--CCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCHHHHH
Confidence 9999999999999999999999999999863 4789999999999885 599999999999999999999988765443
No 108
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.4e-53 Score=360.37 Aligned_cols=228 Identities=25% Similarity=0.451 Sum_probs=186.9
Q ss_pred cccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHH-Hh
Q 020527 77 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LR 155 (325)
Q Consensus 77 ~~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~-~r 155 (325)
|..+.++|+.|+|+++ +++++|||+|++||+++++|||||||||.+.++.|+.+|++|+|.+||.+++.++... .|
T Consensus 2 ~~~L~a~~l~K~y~kr---~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RAr 78 (243)
T COG1137 2 MSTLVAENLAKSYKKR---KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRAR 78 (243)
T ss_pred CcEEEehhhhHhhCCe---eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhh
Confidence 4568999999999764 6999999999999999999999999999999999999999999999999999888653 46
Q ss_pred cceEEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 020527 156 EKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 234 (325)
Q Consensus 156 ~~i~~v~Q~~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~ 234 (325)
..|||+||++.+| .+||+|||+....... .......++..++++++.+............||||||+|+.|||||+.
T Consensus 79 lGigYLpQE~SIFr~LtV~dNi~~vlE~~~--~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~ 156 (243)
T COG1137 79 LGIGYLPQEASIFRKLTVEDNIMAVLEIRE--KDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAA 156 (243)
T ss_pred cCcccccccchHhhcCcHHHHHHHHHhhhh--cchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhc
Confidence 6799999999999 5899999975421111 001111222223333433332222222235799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHH-HhcCEEEEEeCCEEEEEcChHHHhhcCHH
Q 020527 235 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELLHKGRL 312 (325)
Q Consensus 235 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~l~~~~~~ 312 (325)
+|+.+||||||||+||.+...|.++++.++. .|..|+++-|+..+. ..|||.+++.+|++..+|+|+++.+++..
T Consensus 157 ~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~---rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~~V 232 (243)
T COG1137 157 NPKFILLDEPFAGVDPIAVIDIQRIIKHLKD---RGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNEDV 232 (243)
T ss_pred CCCEEEecCCccCCCchhHHHHHHHHHHHHh---CCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcChhh
Confidence 9999999999999999999999999999975 589999999999765 66999999999999999999999987643
No 109
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-51 Score=368.27 Aligned_cols=213 Identities=31% Similarity=0.430 Sum_probs=175.0
Q ss_pred cEEEEEEEEECCCCC-CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHH---H
Q 020527 79 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW---L 154 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~-~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~---~ 154 (325)
.++++||+++|+++. ..++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999997421 136999999999999999999999999999999999999999999999999987765432 3
Q ss_pred h-cceEEEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 020527 155 R-EKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 227 (325)
Q Consensus 155 r-~~i~~v~Q~~~l~~-~tv~enl~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~ 227 (325)
+ +.++|+||++.+|+ .|++||+.++.. .... .+++.++++..++.+..++. ..+||||||||++
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~---------~~~LSgG~~qrl~ 155 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHR---------PSELSGGERQRVA 155 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCC---------hhhCCHHHHHHHH
Confidence 3 67999999998885 699999976421 0111 12233444444444333322 2579999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcC
Q 020527 228 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGN 302 (325)
Q Consensus 228 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~ 302 (325)
||||++.+|++|||||||++||+.++..+.+.|++++++ .|+|||++|||++.+..+|++++|++|++++.++
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 156 IARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRL--QGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999998642 4789999999999988888999999999998765
No 110
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=1.2e-50 Score=362.00 Aligned_cols=217 Identities=45% Similarity=0.713 Sum_probs=187.4
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.|+++|++++|+++ .+.+++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 47899999999642 24699999999999999999999999999999999999999999999999988765555567789
Q ss_pred EEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCC
Q 020527 159 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDP 236 (325)
Q Consensus 159 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p 236 (325)
+|+||++.+|+.|++||+.++.. ......+.+.++..++.+.++..+.++.+... ..+||||||||++||||++.+|
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p 159 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAP-LADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDP 159 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCC-CCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 99999999888899999987532 22344566677788888888887766655443 3579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEc
Q 020527 237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 301 (325)
Q Consensus 237 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g 301 (325)
++|||||||++||+.++..+.+.|+++++ ++|||++|||++.+..||++++|++|++++.|
T Consensus 160 ~llllDEPt~~LD~~~~~~l~~~l~~~~~----~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 160 PILLLDEPTSAMDMNSEERLKERLRQLLG----DKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcC----CCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 99999999999999999999999999853 37999999999987779999999999997653
No 111
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=3.7e-50 Score=440.98 Aligned_cols=297 Identities=22% Similarity=0.340 Sum_probs=250.1
Q ss_pred ehHHHHhc--CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccC-CcccEE
Q 020527 5 LGGMSIMI--GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQR-LMGHVQ 81 (325)
Q Consensus 5 ~g~~~v~~--g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~i~ 81 (325)
+++|.+.. +.++.+.+++.+.++..+..|+..+...+..+.++..+.+|+.++++.+++............ ....++
T Consensus 559 f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 638 (1522)
T TIGR00957 559 FAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNSIT 638 (1522)
T ss_pred HHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccccCCCCCCcEE
Confidence 34566664 568899988888888889999999999999999999999999999987543211000001111 112599
Q ss_pred EEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 020527 82 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 161 (325)
Q Consensus 82 ~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v 161 (325)
++|++|+|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +|+|+
T Consensus 639 ~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~yv 704 (1522)
T TIGR00957 639 VHNATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SVAYV 704 (1522)
T ss_pred EEEeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-------------EEEEE
Confidence 99999999753 24699999999999999999999999999999999999999999999987 49999
Q ss_pred ccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEE
Q 020527 162 GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAIL 239 (325)
Q Consensus 162 ~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~ll 239 (325)
||+|.+|++||+|||.+|.. ..+++..++.+.+++.+.++.+|.|+++.++. .+||||||||++||||++++|+++
T Consensus 705 ~Q~~~l~~~Ti~eNI~~g~~--~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~il 782 (1522)
T TIGR00957 705 PQQAWIQNDSLRENILFGKA--LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIY 782 (1522)
T ss_pred cCCccccCCcHHHHhhcCCc--cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999843 33455667778888888899999999887764 689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHH
Q 020527 240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVK 318 (325)
Q Consensus 240 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 318 (325)
|||||||+||+.+++.+.+.+.+.... .+++|+|+|||+++.+..||+|++|++|++++.|+++++.++.+.|.+++.
T Consensus 783 lLDEp~saLD~~~~~~i~~~l~~~~~~-~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~ 860 (1522)
T TIGR00957 783 LFDDPLSAVDAHVGKHIFEHVIGPEGV-LKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLR 860 (1522)
T ss_pred EEcCCccccCHHHHHHHHHHHhhhhhh-hcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcchhHHHHHH
Confidence 999999999999999999988653211 246899999999999988999999999999999999999987777877765
No 112
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=4e-51 Score=382.29 Aligned_cols=214 Identities=29% Similarity=0.457 Sum_probs=178.5
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ....++++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 4899999999975 3599999999999999999999999999999999999999999999999988643 34567889
Q ss_pred EEEccCCcCc-cccHHHHHhcCCC-CCCCHH----HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 020527 159 GFVGQEPQLL-QMDIKSNIMYGCP-KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 232 (325)
Q Consensus 159 ~~v~Q~~~l~-~~tv~enl~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 232 (325)
||+||++.++ ..|++||+.+... ...... .+.++++..++.+..++. ..+||||||||++|||||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~---------~~~LSgG~~qrv~la~al 150 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVR---------VALLSGGMKRRLTLARAL 150 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCc---------hhhCCHHHHHHHHHHHHH
Confidence 9999999887 5899999974211 111111 122333334443332222 257999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527 233 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 308 (325)
Q Consensus 233 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 308 (325)
+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++|||++.+.. ||++++|++|+++..|+++++..
T Consensus 151 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~---~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 151 INDPQLLILDEPTTGLDPHARHLIWERLRSLLA---RGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh---CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999864 37899999999999865 99999999999999999998864
No 113
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.2e-51 Score=378.23 Aligned_cols=219 Identities=28% Similarity=0.482 Sum_probs=179.1
Q ss_pred cEEEEEEEEECCCCC--CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCC----CHH
Q 020527 79 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL----DIR 152 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~--~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~----~~~ 152 (325)
.|+++|++++|++.. .+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 489999999997421 13599999999999999999999999999999999999999999999999988542 234
Q ss_pred HHhcceEEEccCC--cCccccHHHHHhcCCC-CCCCHH----HHHHHHHHcCHH-HHHHhCCCCcccccCCCCCChHHHH
Q 020527 153 WLREKIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKNE----DIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQ 224 (325)
Q Consensus 153 ~~r~~i~~v~Q~~--~l~~~tv~enl~~~~~-~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~LSgGq~Q 224 (325)
..++.|+|+||++ .+|+.|++||+.++.. .....+ .+.++++.+++. ++.++ ...+|||||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~---------~~~~LSgGq~q 152 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISK---------SPFELSGGQMR 152 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhC---------CcccCCHHHHH
Confidence 5567899999998 4667899999986421 111111 223333334432 22222 23679999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcCh
Q 020527 225 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNH 303 (325)
Q Consensus 225 Rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~ 303 (325)
|++|||||+.+|++|||||||++||+.++..+.+.|+++++ .|.|||++|||++.+. .||++++|++|++++.|++
T Consensus 153 rl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~---~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~ 229 (287)
T PRK13641 153 RVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK---AGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASP 229 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999864 4889999999999986 4999999999999999999
Q ss_pred HHHhhc
Q 020527 304 AELLHK 309 (325)
Q Consensus 304 ~~l~~~ 309 (325)
++++..
T Consensus 230 ~~~~~~ 235 (287)
T PRK13641 230 KEIFSD 235 (287)
T ss_pred HHHhcC
Confidence 987654
No 114
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=5.6e-51 Score=366.95 Aligned_cols=214 Identities=27% Similarity=0.488 Sum_probs=177.4
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHH-Hhcce
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREKI 158 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~-~r~~i 158 (325)
|+++||+++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 1 l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGKR---KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCCE---EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 4789999999743 5999999999999999999999999999999999999999999999999987655443 35679
Q ss_pred EEEccCCcCcc-ccHHHHHhcCCCC-CCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 020527 159 GFVGQEPQLLQ-MDIKSNIMYGCPK-DVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 232 (325)
Q Consensus 159 ~~v~Q~~~l~~-~tv~enl~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 232 (325)
+|+||++.+|+ .|++||+.++... .... ..+.+.++..++.+..++. ..+||||||||++|||||
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~~qrl~la~al 148 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSK---------ASSLSGGERRRVEIARAL 148 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC---------hhhCCHHHHHHHHHHHHH
Confidence 99999998885 6999999864211 1111 1222333334443333222 257999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527 233 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 308 (325)
Q Consensus 233 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 308 (325)
+.+|++|||||||++||+.+++.+.+.|+++.+ .++|+|++|||++.+.. ||++++|++|++++.|+++++..
T Consensus 149 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~---~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 149 ATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD---RGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999999999999999864 37899999999998765 99999999999999999988765
No 115
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=6.9e-51 Score=367.59 Aligned_cols=215 Identities=33% Similarity=0.506 Sum_probs=178.3
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 159 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~ 159 (325)
|+++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .++.++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~-~~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRA-ALARLG 77 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChh-hhhhEE
Confidence 789999999974 3599999999999999999999999999999999999999999999999988665443 345899
Q ss_pred EEccCCcCc-cccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 020527 160 FVGQEPQLL-QMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 233 (325)
Q Consensus 160 ~v~Q~~~l~-~~tv~enl~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 233 (325)
|+||++.++ ..|++||+.++.. ..... +.+.+.++..++.+.+++ ...+||||||||++|||||+
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~---------~~~~LS~G~~qrl~laral~ 148 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADD---------KVRELNGGHRRRVEIARALL 148 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcC---------ChhhCCHHHHHHHHHHHHHh
Confidence 999999875 6899999976421 11111 122233333333332222 23579999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhc
Q 020527 234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK 309 (325)
Q Consensus 234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 309 (325)
.+|+++||||||++||+.+++.+.+.|++++++ +|+|+|++||+++.+..||++++|++|++++.|+++++.+.
T Consensus 149 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 149 HRPALLLLDEPTVGLDPASRAAIVAHVRALCRD--QGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred cCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHh--CCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 999999999999999999999999999998642 47899999999999877999999999999999999988764
No 116
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2.6e-51 Score=362.65 Aligned_cols=201 Identities=33% Similarity=0.545 Sum_probs=169.4
Q ss_pred EEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 020527 81 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 160 (325)
Q Consensus 81 ~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~ 160 (325)
+++|++++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...+++++|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 368999999751 359999999999999999999999999999999999999999999999998753 345678999
Q ss_pred EccCCc--CccccHHHHHhcCCCC-CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC
Q 020527 161 VGQEPQ--LLQMDIKSNIMYGCPK-DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 237 (325)
Q Consensus 161 v~Q~~~--l~~~tv~enl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ 237 (325)
+||++. ++..|++||+.++... .....++.++++..++.++.++.+ ..||||||||++|||||+.+|+
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~laral~~~p~ 146 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP---------LSLSGGQKQRLAIAAALLSGKD 146 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc---------hhCCHHHHHHHHHHHHHHhCCC
Confidence 999974 4578999999875321 112234555666666655544433 5799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEE
Q 020527 238 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII 298 (325)
Q Consensus 238 llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~ 298 (325)
+|||||||++||+.+++.+.+.|+++++ +|+|+|++|||++.+.. ||++++|++|+++
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 147 LLIFDEPTSGLDYKNMERVGELIRELAA---QGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999864 37899999999999865 9999999999874
No 117
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=4.5e-51 Score=364.74 Aligned_cols=212 Identities=26% Similarity=0.508 Sum_probs=176.6
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 159 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~ 159 (325)
|+++||+++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEE
Confidence 4789999999742 13699999999999999999999999999999999999999999999999988653 345677899
Q ss_pred EEccCCcCc-cccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 020527 160 FVGQEPQLL-QMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 233 (325)
Q Consensus 160 ~v~Q~~~l~-~~tv~enl~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 233 (325)
|+||++.++ ..|++||+.+... ..... +.+.++++..++.+..++.+ .+||||||||++|||||+
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~al~ 149 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRA---------RTLSGGMKRKLSLAIALI 149 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChh---------hhCCHHHHHHHHHHHHHh
Confidence 999999888 5899999976421 11111 22334455555544433322 579999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHH
Q 020527 234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL 306 (325)
Q Consensus 234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l 306 (325)
.+|++|||||||++||+.+++.+.+.|+++++ ++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 150 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~----~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 150 GGPSVLLLDEPTSGLDPASRRAIWDLILEVRK----GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred cCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc----CCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999999999999853 4799999999999865 999999999999999988764
No 118
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=3.2e-51 Score=362.75 Aligned_cols=205 Identities=26% Similarity=0.439 Sum_probs=176.0
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 159 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~ 159 (325)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ..+++.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 478999999964 3699999999999999999999999999999999999999999999999987643 44567899
Q ss_pred EEccCCcCc-cccHHHHHhcCCC-CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC
Q 020527 160 FVGQEPQLL-QMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 237 (325)
Q Consensus 160 ~v~Q~~~l~-~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ 237 (325)
|+||++.++ ..|++||+.++.. .....+++.++++..++.+..++.+ .+|||||||||+||||++.+|+
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~al~~~p~ 146 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKV---------KGFSLGMKQRLGIALALLGNPD 146 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhH---------hhCCHHHHHHHHHHHHHhcCCC
Confidence 999999887 5899999976421 1123445566677777766655443 5699999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEc
Q 020527 238 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 301 (325)
Q Consensus 238 llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g 301 (325)
++||||||++||+.+++.+.+.|+++++ +|+|+|++|||++.+.. ||++++|++|++++.|
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 147 LLILDEPTNGLDPDGIKELRELILSLRD---QGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999864 37899999999999865 9999999999998754
No 119
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.9e-51 Score=366.69 Aligned_cols=216 Identities=26% Similarity=0.451 Sum_probs=178.8
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHH-Hhcc
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREK 157 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~-~r~~ 157 (325)
+|+++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... .++.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 5899999999964 36999999999999999999999999999999999999999999999999987665443 5678
Q ss_pred eEEEccCCcCcc-ccHHHHHhcCCCCCCCH---HHHHHHHHHc-CHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 020527 158 IGFVGQEPQLLQ-MDIKSNIMYGCPKDVKN---EDIEWAAKQA-YVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 232 (325)
Q Consensus 158 i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 232 (325)
++|+||++.+|+ .||.||+.++....... +.+.++++.. ++.+..+. ...+||||||||++|||||
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~---------~~~~LS~G~~qrl~la~al 152 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQ---------RAGTMSGGEQQMLAIGRAL 152 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhC---------chhhCCHHHHHHHHHHHHH
Confidence 999999998885 69999998753211111 1122222222 12222221 2257999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhhc
Q 020527 233 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 309 (325)
Q Consensus 233 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~ 309 (325)
+.+|+++||||||++||+.+++.+.+.|+++++ +|+|+|++|||++.+. .|||+++|++|++++.|+++++...
T Consensus 153 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (237)
T PRK11614 153 MSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE---QGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227 (237)
T ss_pred HhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH---CCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhcC
Confidence 999999999999999999999999999999864 3789999999999875 5999999999999999999998754
No 120
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.4e-51 Score=370.17 Aligned_cols=221 Identities=31% Similarity=0.506 Sum_probs=179.5
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 159 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~ 159 (325)
++++||+++|++. +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4689999999751 35999999999999999999999999999999999999999999999999987666666678899
Q ss_pred EEccCCcCc-cccHHHHHhcCCCC-CCCHHHHHHHHHHcCHHHHHHhCCCCc--ccccCCCCCChHHHHHHHHHHHHcCC
Q 020527 160 FVGQEPQLL-QMDIKSNIMYGCPK-DVKNEDIEWAAKQAYVHEFILSLPCGY--ETLVDDDLLSGGQKQRIAIARAILRD 235 (325)
Q Consensus 160 ~v~Q~~~l~-~~tv~enl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~LSgGq~QRv~iAral~~~ 235 (325)
|+||++.+| ..|++||+.++... ....... ...+.++++.+.... .......+||||||||++|||||+.+
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~ 153 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKI-----RERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAAD 153 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcC
Confidence 999999888 47999999764211 1111110 011223333332221 11122367999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhhc
Q 020527 236 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 309 (325)
Q Consensus 236 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~ 309 (325)
|++|||||||++||+.++..+.+.|++++++ .|+|||++||+++.+. .||++++|++|++++.|+++++...
T Consensus 154 p~llllDEPt~~LD~~~~~~l~~~L~~~~~~--~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 154 PPLLLMDEPFGALDPITRDQLQEEFKRLQQE--LGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHH--cCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 9999999999999999999999999998652 3789999999999875 4999999999999999999988654
No 121
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=2.3e-51 Score=366.07 Aligned_cols=207 Identities=37% Similarity=0.522 Sum_probs=169.5
Q ss_pred EEEEEEEEECCCCC-CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHH----HH
Q 020527 80 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR----WL 154 (325)
Q Consensus 80 i~~~~v~~~y~~~~-~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~----~~ 154 (325)
|+++||+++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 47899999997421 13699999999999999999999999999999999999999999999999998765432 23
Q ss_pred hcceEEEccCCcCcc-ccHHHHHhcCCCCC-CC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 020527 155 REKIGFVGQEPQLLQ-MDIKSNIMYGCPKD-VK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 228 (325)
Q Consensus 155 r~~i~~v~Q~~~l~~-~tv~enl~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 228 (325)
++.++|+||++.+|. .|++||+.++.... .. .+.+.++++..++.+.+++. ..+||||||||++|
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~~qrv~l 151 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHY---------PSELSGGQQQRVAI 151 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcC---------hhhcCHHHHHHHHH
Confidence 568999999998885 69999998753211 11 12233344444444433332 25799999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEE
Q 020527 229 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRI 297 (325)
Q Consensus 229 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i 297 (325)
||||+.+|++|||||||++||+.++..+.+.|++++++ .|+|||++||+++.+..||++++|++|++
T Consensus 152 a~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 152 ARALANDPKIILADEPTGNLDSETGKEVMELLRELNKE--AGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 99999999999999999999999999999999998652 37899999999998878999999999974
No 122
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=8.8e-51 Score=373.89 Aligned_cols=226 Identities=22% Similarity=0.361 Sum_probs=184.0
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHH---HHh
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLR 155 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~---~~r 155 (325)
.|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .++
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 5899999999964 3599999999999999999999999999999999999999999999999998765432 346
Q ss_pred cceEEEccCCcCcc-ccHHHHHhcCCCC--CCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 020527 156 EKIGFVGQEPQLLQ-MDIKSNIMYGCPK--DVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 228 (325)
Q Consensus 156 ~~i~~v~Q~~~l~~-~tv~enl~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 228 (325)
++++|+||++.+|+ .|+.||+.++... .... ..+...++.+++.+..++. ..+||||||||++|
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~---------~~~LSgGq~qrv~l 154 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLM---------PSELSGGMARRAAL 154 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCC---------hhhCCHHHHHHHHH
Confidence 78999999998885 6999999764211 1111 1222334444443333322 36799999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHh
Q 020527 229 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 307 (325)
Q Consensus 229 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 307 (325)
||||+.+|++|||||||++||+.+++.+.+.|+++.++ .|+|||++|||++.+.. ||++++|++|++++.|++++++
T Consensus 155 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 155 ARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSA--LGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh--cCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999998653 37899999999998865 9999999999999999999987
Q ss_pred hcC-HHHHHHHH
Q 020527 308 HKG-RLYAKLVK 318 (325)
Q Consensus 308 ~~~-~~~~~~~~ 318 (325)
+.. ..+..++.
T Consensus 233 ~~~~~~~~~~~~ 244 (269)
T PRK11831 233 ANPDPRVRQFLD 244 (269)
T ss_pred cCCcHHHHHHHH
Confidence 642 23444443
No 123
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-50 Score=374.04 Aligned_cols=216 Identities=29% Similarity=0.537 Sum_probs=182.2
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCC-HHHHhcce
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-IRWLREKI 158 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~-~~~~r~~i 158 (325)
++++|++++|++. +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+ ...+++.+
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPDG--TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCCC--CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 7899999999632 35999999999999999999999999999999999999999999999999987654 34567889
Q ss_pred EEEccCCc--CccccHHHHHhcCCCCC-CC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 020527 159 GFVGQEPQ--LLQMDIKSNIMYGCPKD-VK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 231 (325)
Q Consensus 159 ~~v~Q~~~--l~~~tv~enl~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 231 (325)
+|+||++. ++..|++||+.++.... .. .+.+.++++..++.+..++.+ ..||||||||++||||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS~G~~qrv~lara 150 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSP---------KTLSGGQGQCVALAGI 150 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCc---------ccCCHHHHHHHHHHHH
Confidence 99999985 45789999998752111 11 122344455555555444333 5799999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhc
Q 020527 232 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK 309 (325)
Q Consensus 232 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 309 (325)
|+.+|++|||||||++||+.++..+.+.|+++++ .|.|||++|||++.+..||++++|++|++++.|++++++..
T Consensus 151 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~---~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 151 LTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE---KGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999999999864 38899999999999877999999999999999999887654
No 124
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1.1e-50 Score=369.06 Aligned_cols=220 Identities=33% Similarity=0.499 Sum_probs=178.1
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCC--------
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-------- 150 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~-------- 150 (325)
+|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+
T Consensus 3 ~l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 3 AIEVKNLVKKFHGQ---TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL 79 (250)
T ss_pred cEEEeceEEEECCe---eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence 48999999999743 5999999999999999999999999999999999999999999999999886432
Q ss_pred HHHHhcceEEEccCCcCc-cccHHHHHhcCCC--CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 020527 151 IRWLREKIGFVGQEPQLL-QMDIKSNIMYGCP--KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 227 (325)
Q Consensus 151 ~~~~r~~i~~v~Q~~~l~-~~tv~enl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~ 227 (325)
...+++.++|+||++.++ ..|++||+.++.. .......... .+.++++.+...........+||||||||++
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~ 154 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATA-----RARELLAKVGLAGKETSYPRRLSGGQQQRVA 154 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHcCCcchhhCChhhCChHHHHHHH
Confidence 234577899999999888 4799999976411 1111111110 1223333332211112223679999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHH
Q 020527 228 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL 306 (325)
Q Consensus 228 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l 306 (325)
|||||+.+|++|||||||++||+.++..+.+.|+++.+ +|.|||++|||++.+.. ||++++|++|++++.|+++++
T Consensus 155 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 231 (250)
T PRK11264 155 IARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ---EKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKAL 231 (250)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999864 37899999999999865 999999999999999999998
Q ss_pred hhc
Q 020527 307 LHK 309 (325)
Q Consensus 307 ~~~ 309 (325)
++.
T Consensus 232 ~~~ 234 (250)
T PRK11264 232 FAD 234 (250)
T ss_pred hcC
Confidence 754
No 125
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-50 Score=382.64 Aligned_cols=223 Identities=32% Similarity=0.509 Sum_probs=183.0
Q ss_pred ccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC-----CCCCeEEECCEeCCC--CC
Q 020527 78 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LD 150 (325)
Q Consensus 78 ~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~-----~~~G~I~i~g~~i~~--~~ 150 (325)
+.|+++|++++|.+. ..++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|+++.. .+
T Consensus 79 ~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~ 157 (329)
T PRK14257 79 NVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKIS 157 (329)
T ss_pred ceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 469999999999642 2469999999999999999999999999999999999986 579999999999863 23
Q ss_pred HHHHhcceEEEccCCcCccccHHHHHhcCCCC-CCCHHH-----HHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHH
Q 020527 151 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DVKNED-----IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 224 (325)
Q Consensus 151 ~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~Q 224 (325)
...+|+.++|+||+|.+|++|++||+.|+... ...++. ...+++.+++.+.++. .....+.+|||||||
T Consensus 158 ~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~-----~~~~~~~~LSgGqkq 232 (329)
T PRK14257 158 SLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKD-----DLDKAGNALSGGQQQ 232 (329)
T ss_pred hHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhh-----hhhCCcccCCHHHHH
Confidence 45678899999999999999999999976311 111222 2333444443221110 001123679999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcCh
Q 020527 225 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 303 (325)
Q Consensus 225 Rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~ 303 (325)
|++|||||+.+|+||||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||||++|++|++++.|++
T Consensus 233 Rl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~----~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~ 308 (329)
T PRK14257 233 RLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK----KYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGET 308 (329)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc----CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999998853 5799999999999876 999999999999999999
Q ss_pred HHHhhcC
Q 020527 304 AELLHKG 310 (325)
Q Consensus 304 ~~l~~~~ 310 (325)
+++++..
T Consensus 309 ~~l~~~~ 315 (329)
T PRK14257 309 KTIFIHP 315 (329)
T ss_pred HHHhcCC
Confidence 9998753
No 126
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-50 Score=373.15 Aligned_cols=220 Identities=34% Similarity=0.598 Sum_probs=185.0
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
+++++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++++
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 48999999999632 24699999999999999999999999999999999999999999999999998766666678899
Q ss_pred EEEccCCc--CccccHHHHHhcCCCC-CCCHH----HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 020527 159 GFVGQEPQ--LLQMDIKSNIMYGCPK-DVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 231 (325)
Q Consensus 159 ~~v~Q~~~--l~~~tv~enl~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 231 (325)
+|+||++. ++..|++||+.++... ....+ .+.++++..++.+++++.+ .+||||||||++||||
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~lara 156 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEP---------QNLSGGQKQRVAIASV 156 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCc---------ccCCHHHHHHHHHHHH
Confidence 99999984 3468999999875211 11121 2344555566655555443 5799999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcC
Q 020527 232 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG 310 (325)
Q Consensus 232 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~ 310 (325)
|+.+|++|||||||++||+.+++.+.+.|++++++ .++|+|++||+++.+..||++++|++|++++.|+++++....
T Consensus 157 l~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~--~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 233 (271)
T PRK13632 157 LALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKT--RKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNK 233 (271)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcCH
Confidence 99999999999999999999999999999998652 258999999999988779999999999999999998876543
No 127
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-50 Score=373.88 Aligned_cols=221 Identities=34% Similarity=0.532 Sum_probs=186.5
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.|+++||+++|++.....+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+...+++.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743223599999999999999999999999999999999999999999999999998765556678899
Q ss_pred EEEccCCc--CccccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 020527 159 GFVGQEPQ--LLQMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 231 (325)
Q Consensus 159 ~~v~Q~~~--l~~~tv~enl~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 231 (325)
+|+||++. ++..||.||+.++.. ..... +.+..+++.+++.++.++.+ ..||||||||++||||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~lAra 154 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREP---------ARLSGGQKQRVAVAGI 154 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCc---------ccCCHHHHHHHHHHHH
Confidence 99999984 457899999986521 11122 22344555566655544433 5799999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcC
Q 020527 232 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG 310 (325)
Q Consensus 232 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~ 310 (325)
|+.+|++|||||||++||+.++..+.+.|+++.++ .|.|||++|||++.+..||++++|++|++++.|++++++...
T Consensus 155 L~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 231 (277)
T PRK13642 155 IALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEK--YQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATS 231 (277)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcCH
Confidence 99999999999999999999999999999998752 478999999999998779999999999999999999887643
No 128
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=7.8e-51 Score=362.70 Aligned_cols=209 Identities=27% Similarity=0.480 Sum_probs=175.0
Q ss_pred EEEEEEEEECCCCCC-CCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 80 VQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 80 i~~~~v~~~y~~~~~-~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
|+++|++++|+++.. .++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ....+++++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 789999999975311 159999999999999999999999999999999999999999999999999864 345567889
Q ss_pred EEEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 020527 159 GFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 232 (325)
Q Consensus 159 ~~v~Q~~~l~~-~tv~enl~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 232 (325)
+|+||++.+|+ .|++||+.+... .... .+.+.++++..++.+.+++.+ .+||||||||++|||||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~laral 151 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRV---------GGFSTGMRQKVAIARAL 151 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhh---------hhcCHHHHHHHHHHHHH
Confidence 99999998885 699999975321 1111 223445566666655544433 57999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEc
Q 020527 233 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 301 (325)
Q Consensus 233 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g 301 (325)
+.+|++|||||||++||+.+++.+.+.|+++++ +|+|+|++|||++.+.. ||++++|++|++++.|
T Consensus 152 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 152 VHDPPVLLLDEPTTGLDVMATRALREFIRQLRA---LGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred hcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999999999864 37899999999998864 9999999999998653
No 129
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-50 Score=372.22 Aligned_cols=216 Identities=32% Similarity=0.469 Sum_probs=184.2
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.|+++|++++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 11 ~l~i~~l~~~~~~~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPGR---TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECCE---EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 48999999999743 699999999999999999999999999999999999999999999999998766666677889
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCCC------C---CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 020527 159 GFVGQEPQLL-QMDIKSNIMYGCPKD------V---KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 228 (325)
Q Consensus 159 ~~v~Q~~~l~-~~tv~enl~~~~~~~------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 228 (325)
+|+||++.++ ..|+.||+.++.... . ..+.+..+++.+++.+.+++.+ .+||||||||++|
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~l 158 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV---------DSLSGGERQRAWI 158 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc---------ccCCHHHHHHHHH
Confidence 9999998776 579999998753110 0 1223444555666655444433 5799999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHh
Q 020527 229 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELL 307 (325)
Q Consensus 229 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~ 307 (325)
||||+.+|++|||||||++||+.+++.+.+.|.++.++ .|.|||++||+++.+. .||++++|++|++++.|+++++.
T Consensus 159 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~--~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 159 AMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQE--RGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 99999999999999999999999999999999998652 3789999999999986 59999999999999999998876
Q ss_pred h
Q 020527 308 H 308 (325)
Q Consensus 308 ~ 308 (325)
.
T Consensus 237 ~ 237 (265)
T PRK10575 237 R 237 (265)
T ss_pred C
Confidence 5
No 130
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=9.1e-51 Score=367.59 Aligned_cols=215 Identities=34% Similarity=0.548 Sum_probs=180.2
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCC--HHHHhcc
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD--IRWLREK 157 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~--~~~~r~~ 157 (325)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+ ...++++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 789999999974 35999999999999999999999999999999999999999999999999986532 2455778
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCC--CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 020527 158 IGFVGQEPQLL-QMDIKSNIMYGCP--KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 230 (325)
Q Consensus 158 i~~v~Q~~~l~-~~tv~enl~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 230 (325)
++|+||++.++ ..||+||+.++.. ..... +.+.++++..++.+.+++.+ ..||||||||++|||
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS~G~~qrv~la~ 149 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYP---------SELSGGQQQRVAIAR 149 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcCh---------hhcCHHHHHHHHHHH
Confidence 99999999887 4799999987521 11111 12333444444444433332 579999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhc
Q 020527 231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 309 (325)
Q Consensus 231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 309 (325)
||+.+|+++||||||++||+.++..+.+.|+++++ +|+|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 150 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 150 ALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE---EGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 99999999999999999999999999999999864 37899999999999865 999999999999999999988654
No 131
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-50 Score=381.64 Aligned_cols=228 Identities=24% Similarity=0.369 Sum_probs=182.5
Q ss_pred cccEEEEEEEEECCCCCC-CCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC----CCCCeEEECCEeCCCCCH
Q 020527 77 MGHVQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE----PSDGQIYIDGFPLTDLDI 151 (325)
Q Consensus 77 ~~~i~~~~v~~~y~~~~~-~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~----~~~G~I~i~g~~i~~~~~ 151 (325)
|..|+++||++.|+.+.. ..+|+||||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++..++.
T Consensus 1 m~~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~ 80 (326)
T PRK11022 1 MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE 80 (326)
T ss_pred CceEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCH
Confidence 335899999999975321 359999999999999999999999999999999999997 489999999999987765
Q ss_pred HHHh----cceEEEccCCc--Cc-cccHHHHHhcCCC--CCCC----HHHHHHHHHHcCHH---HHHHhCCCCcccccCC
Q 020527 152 RWLR----EKIGFVGQEPQ--LL-QMDIKSNIMYGCP--KDVK----NEDIEWAAKQAYVH---EFILSLPCGYETLVDD 215 (325)
Q Consensus 152 ~~~r----~~i~~v~Q~~~--l~-~~tv~enl~~~~~--~~~~----~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 215 (325)
+.++ +.|+|+||++. ++ ..|+.+++..... .... .+.+.++++.+++. ..+++. +
T Consensus 81 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~---------p 151 (326)
T PRK11022 81 KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVY---------P 151 (326)
T ss_pred HHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCC---------c
Confidence 4432 46999999984 44 3688777643210 0111 22334455555553 122322 3
Q ss_pred CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeC
Q 020527 216 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDD 294 (325)
Q Consensus 216 ~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~ 294 (325)
.+|||||||||+|||||+.+|++||+||||++||+.++.+++++|++++++ .|.|+|+||||++.+. .||||++|++
T Consensus 152 ~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~--~g~til~iTHdl~~~~~~adri~vm~~ 229 (326)
T PRK11022 152 HQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQK--ENMALVLITHDLALVAEAAHKIIVMYA 229 (326)
T ss_pred hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 679999999999999999999999999999999999999999999999753 4889999999999986 5999999999
Q ss_pred CEEEEEcChHHHhhc-CHHHHH
Q 020527 295 GRIIEVGNHAELLHK-GRLYAK 315 (325)
Q Consensus 295 G~i~~~g~~~~l~~~-~~~~~~ 315 (325)
|+|++.|++++++++ ...|.+
T Consensus 230 G~ive~g~~~~~~~~p~hpyt~ 251 (326)
T PRK11022 230 GQVVETGKAHDIFRAPRHPYTQ 251 (326)
T ss_pred CEEEEECCHHHHhhCCCChHHH
Confidence 999999999999865 334544
No 132
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-50 Score=373.01 Aligned_cols=216 Identities=28% Similarity=0.422 Sum_probs=178.7
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCC--CCHHHHhcc
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD--LDIRWLREK 157 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~--~~~~~~r~~ 157 (325)
|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .+...+++.
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 789999999974 359999999999999999999999999999999999999999999999999842 233456778
Q ss_pred eEEEccCCc--CccccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 020527 158 IGFVGQEPQ--LLQMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 230 (325)
Q Consensus 158 i~~v~Q~~~--l~~~tv~enl~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 230 (325)
++|+||++. ++..|+.+|+.++.. ..... +.+.++++..++.++.++. ..+||||||||++|||
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LSgG~~qrl~lar 149 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQP---------IQCLSHGQKKRVAIAG 149 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCC---------chhCCHHHHHHHHHHH
Confidence 999999986 346789999976421 11111 1223344444554433322 2579999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhc
Q 020527 231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 309 (325)
Q Consensus 231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 309 (325)
||+.+|++|||||||++||+.++..+.+.|+++.+ +|.|||++|||++.+.. ||++++|++|++++.|++++++..
T Consensus 150 aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 150 ALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA---QGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999864 37899999999999864 999999999999999999888664
Q ss_pred C
Q 020527 310 G 310 (325)
Q Consensus 310 ~ 310 (325)
.
T Consensus 227 ~ 227 (271)
T PRK13638 227 T 227 (271)
T ss_pred h
Confidence 3
No 133
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=8.9e-51 Score=363.08 Aligned_cols=208 Identities=31% Similarity=0.487 Sum_probs=170.8
Q ss_pred EEEEEEEEECCCCC-CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHH---Hh
Q 020527 80 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW---LR 155 (325)
Q Consensus 80 i~~~~v~~~y~~~~-~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~---~r 155 (325)
|+++||+++|++.. ..++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... ++
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999996421 135999999999999999999999999999999999999999999999999987665432 23
Q ss_pred -cceEEEccCCcCc-cccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 020527 156 -EKIGFVGQEPQLL-QMDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 228 (325)
Q Consensus 156 -~~i~~v~Q~~~l~-~~tv~enl~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 228 (325)
+.++|+||++.+| ..|++||+.++.. .... .+.+.+.++..++.+.+++. ...||||||||++|
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~~qrv~l 152 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHR---------PSELSGGERQRVAI 152 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC---------hhhCCHHHHHHHHH
Confidence 6799999999888 5799999976421 1111 11233344444444433332 25799999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEE
Q 020527 229 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRII 298 (325)
Q Consensus 229 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~ 298 (325)
||||+.+|++|||||||++||+.++..+.+.|++++++ .++|+|++|||++.+..||++++|++|+++
T Consensus 153 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 153 ARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRE--LNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999999998652 378999999999988779999999999975
No 134
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=6.4e-51 Score=362.02 Aligned_cols=206 Identities=33% Similarity=0.541 Sum_probs=173.1
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 159 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~ 159 (325)
|+++|++++|+++ ++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. +++++
T Consensus 1 i~~~~l~~~~~~~---~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGNV---TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECCe---eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 4789999999753 599999999999999999999999999999999999999999999999998654332 46799
Q ss_pred EEccCCcCc-cccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 020527 160 FVGQEPQLL-QMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 233 (325)
Q Consensus 160 ~v~Q~~~l~-~~tv~enl~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 233 (325)
|+||++.++ ..|++||+.++... ... .+.+.++++..++.+.+++.+ .+||||||||++|||||+
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qr~~laral~ 146 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKP---------KQLSGGQRQRVALGRAIV 146 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCCh---------hhCCHHHHHHHHHHHHHh
Confidence 999999888 57999999764211 111 122344555556655554443 579999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEc
Q 020527 234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 301 (325)
Q Consensus 234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g 301 (325)
.+|+++||||||++||+.++..+.+.|+++.++ .|+|||++|||++.+.. ||++++|++|++++.|
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 147 REPKVFLMDEPLSNLDAKLRVQMRAELKRLQQR--LGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999998753 37899999999998865 9999999999998765
No 135
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=1.1e-50 Score=368.75 Aligned_cols=214 Identities=33% Similarity=0.538 Sum_probs=178.7
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCC-----CCeEEECCEeCCCC--CHH
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-----DGQIYIDGFPLTDL--DIR 152 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~-----~G~I~i~g~~i~~~--~~~ 152 (325)
|+++||+++|++. .+++|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++... ...
T Consensus 2 l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGEK---EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECCe---eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 7899999999753 5999999999999999999999999999999999999998 99999999998653 234
Q ss_pred HHhcceEEEccCCcCccccHHHHHhcCCCC-C-CCH----HHHHHHHHHcCHH----HHHHhCCCCcccccCCCCCChHH
Q 020527 153 WLREKIGFVGQEPQLLQMDIKSNIMYGCPK-D-VKN----EDIEWAAKQAYVH----EFILSLPCGYETLVDDDLLSGGQ 222 (325)
Q Consensus 153 ~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~-~-~~~----~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~LSgGq 222 (325)
.+++.++|+||++.+|+.|++||+.++... . ... +.+..+++..++. +.+++ ...+|||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---------~~~~LSgG~ 149 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHD---------SALGLSGGQ 149 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhC---------CcccCCHHH
Confidence 567889999999988889999999864211 1 111 2233344444443 22222 236799999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEc
Q 020527 223 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 301 (325)
Q Consensus 223 ~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g 301 (325)
|||++|||||+.+|+++||||||++||+.++..+.++|+++++ ++|+|++|||++.+.. ||++++|++|++++.|
T Consensus 150 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~----~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~ 225 (247)
T TIGR00972 150 QQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK----KYTIVIVTHNMQQAARISDRTAFFYDGELVEYG 225 (247)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh----cCeEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999999864 3799999999998864 9999999999999999
Q ss_pred ChHHHhhc
Q 020527 302 NHAELLHK 309 (325)
Q Consensus 302 ~~~~l~~~ 309 (325)
++++++..
T Consensus 226 ~~~~~~~~ 233 (247)
T TIGR00972 226 PTEQIFTN 233 (247)
T ss_pred CHHHHHhC
Confidence 99998754
No 136
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-51 Score=361.80 Aligned_cols=229 Identities=27% Similarity=0.424 Sum_probs=191.4
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHH-hcc
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REK 157 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~-r~~ 157 (325)
.+++++++++|++ ..+++||||++++||+++||||||||||||+++|+|+|+|++|+|.++|+++..+++.+. |..
T Consensus 4 lL~v~~l~k~FGG---l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~G 80 (250)
T COG0411 4 LLEVRGLSKRFGG---LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLG 80 (250)
T ss_pred eeeeccceeecCC---EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhcc
Confidence 4789999999986 369999999999999999999999999999999999999999999999999999887654 667
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCCCC----------CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHH
Q 020527 158 IGFVGQEPQLL-QMDIKSNIMYGCPKD----------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 226 (325)
Q Consensus 158 i~~v~Q~~~l~-~~tv~enl~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv 226 (325)
|+--||.+.+| .+||.||++.+.... .......++. ....++++.+...........+||+|||+|+
T Consensus 81 i~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~--e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~L 158 (250)
T COG0411 81 IARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREAR--ERARELLEFVGLGELADRPAGNLSYGQQRRL 158 (250)
T ss_pred ceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHH--HHHHHHHHHcCCchhhcchhhcCChhHhHHH
Confidence 99999999999 689999998752111 0000111111 1234455555444444444468999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHH
Q 020527 227 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAE 305 (325)
Q Consensus 227 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~ 305 (325)
.|||||+.+|++||||||.+||.+.....+.+.+++++++ .|.||++|-|||+.+. .||||+||+.|+++++|+|++
T Consensus 159 EIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~--~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~e 236 (250)
T COG0411 159 EIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDR--GGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEE 236 (250)
T ss_pred HHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhc--CCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHH
Confidence 9999999999999999999999999999999999999863 4799999999999985 599999999999999999999
Q ss_pred HhhcCHHHH
Q 020527 306 LLHKGRLYA 314 (325)
Q Consensus 306 l~~~~~~~~ 314 (325)
+.+++...+
T Consensus 237 V~~dp~Vie 245 (250)
T COG0411 237 VRNNPRVIE 245 (250)
T ss_pred HhcCHHhHH
Confidence 988765543
No 137
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-50 Score=368.51 Aligned_cols=217 Identities=31% Similarity=0.452 Sum_probs=183.0
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
+|+++|++++|+++ .+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 2 ~l~~~~l~~~~~~~---~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i 78 (258)
T PRK13548 2 MLEARNLSVRLGGR---TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRR 78 (258)
T ss_pred eEEEEeEEEEeCCe---eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhhe
Confidence 38999999999753 599999999999999999999999999999999999999999999999998766666667789
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCCC-C----CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 020527 159 GFVGQEPQLL-QMDIKSNIMYGCPKD-V----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 232 (325)
Q Consensus 159 ~~v~Q~~~l~-~~tv~enl~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 232 (325)
+|+||++.++ ..|++||+.++.... . ....+.++++..++.+..++.+ .+||||||||++|||||
T Consensus 79 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgGe~qrv~la~al 149 (258)
T PRK13548 79 AVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDY---------PQLSGGEQQRVQLARVL 149 (258)
T ss_pred EEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCc---------ccCCHHHHHHHHHHHHH
Confidence 9999999874 689999998753211 1 1122344555555554443333 57999999999999999
Q ss_pred c------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHH
Q 020527 233 L------RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAE 305 (325)
Q Consensus 233 ~------~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~ 305 (325)
+ .+|++|||||||++||+.++..+.+.|+++.++ .|.|||++|||++.+. .||+|++|++|++++.|++++
T Consensus 150 ~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (258)
T PRK13548 150 AQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHE--RGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAE 227 (258)
T ss_pred hcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHH
Confidence 9 599999999999999999999999999998632 4789999999999986 599999999999999999988
Q ss_pred Hhhc
Q 020527 306 LLHK 309 (325)
Q Consensus 306 l~~~ 309 (325)
+...
T Consensus 228 ~~~~ 231 (258)
T PRK13548 228 VLTP 231 (258)
T ss_pred HhCh
Confidence 8653
No 138
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-50 Score=374.33 Aligned_cols=221 Identities=30% Similarity=0.527 Sum_probs=186.5
Q ss_pred cEEEEEEEEECCCCC---CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCC-HHHH
Q 020527 79 HVQFVNISFHYPSRP---TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-IRWL 154 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~---~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~-~~~~ 154 (325)
+|+++|++++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 489999999997421 246999999999999999999999999999999999999999999999999986533 3456
Q ss_pred hcceEEEccCCc--CccccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 020527 155 REKIGFVGQEPQ--LLQMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 227 (325)
Q Consensus 155 r~~i~~v~Q~~~--l~~~tv~enl~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~ 227 (325)
+++++|+||++. ++..|+.+|+.++... ... .+.+.++++.+++.++.++.+ .+||||||||++
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LS~G~~qrv~ 154 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP---------HLLSGGQKQRVA 154 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc---------ccCCHHHHHHHH
Confidence 788999999984 4567899999875211 111 233455666667666655544 579999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHh
Q 020527 228 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL 307 (325)
Q Consensus 228 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~ 307 (325)
|||||+.+|+++||||||++||+.++..+.+.|+++.++ .|.|||++|||++.+..||++++|++|++++.|+++++.
T Consensus 155 laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~--~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 155 IAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKK--YGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999652 488999999999998779999999999999999999987
Q ss_pred hcC
Q 020527 308 HKG 310 (325)
Q Consensus 308 ~~~ 310 (325)
...
T Consensus 233 ~~~ 235 (280)
T PRK13633 233 KEV 235 (280)
T ss_pred cCh
Confidence 643
No 139
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-50 Score=365.24 Aligned_cols=217 Identities=24% Similarity=0.418 Sum_probs=179.5
Q ss_pred ccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHH-Hhc
Q 020527 78 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LRE 156 (325)
Q Consensus 78 ~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~-~r~ 156 (325)
..++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (241)
T PRK10895 2 ATLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARR 78 (241)
T ss_pred ceEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHh
Confidence 35899999999974 36999999999999999999999999999999999999999999999999987665433 467
Q ss_pred ceEEEccCCcCcc-ccHHHHHhcCCCCC--CCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 020527 157 KIGFVGQEPQLLQ-MDIKSNIMYGCPKD--VKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 229 (325)
Q Consensus 157 ~i~~v~Q~~~l~~-~tv~enl~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA 229 (325)
.++|+||++.+++ .|++||+.+..... ... ..+.+.++..++.+..+ .....||||||||++||
T Consensus 79 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---------~~~~~LS~G~~qrv~la 149 (241)
T PRK10895 79 GIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRD---------SMGQSLSGGERRRVEIA 149 (241)
T ss_pred CeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhh---------cchhhCCHHHHHHHHHH
Confidence 8999999998885 79999998642111 111 11222333333332222 22357999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhh
Q 020527 230 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLH 308 (325)
Q Consensus 230 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~ 308 (325)
|||+.+|++|||||||++||+.++..+.+.++++++ +|+|+|++||+++.+. .||++++|++|++++.|+++++++
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 150 RALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD---SGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh---cCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 999999999999999999999999999999998864 3789999999998875 499999999999999999998875
Q ss_pred c
Q 020527 309 K 309 (325)
Q Consensus 309 ~ 309 (325)
.
T Consensus 227 ~ 227 (241)
T PRK10895 227 D 227 (241)
T ss_pred C
Confidence 4
No 140
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-50 Score=368.91 Aligned_cols=224 Identities=25% Similarity=0.451 Sum_probs=186.7
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
+|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 2 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 78 (255)
T PRK11231 2 TLRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRL 78 (255)
T ss_pred EEEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhhe
Confidence 4899999999974 3699999999999999999999999999999999999999999999999988766666667789
Q ss_pred EEEccCCcCcc-ccHHHHHhcCCCC-----C----CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 020527 159 GFVGQEPQLLQ-MDIKSNIMYGCPK-----D----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 228 (325)
Q Consensus 159 ~~v~Q~~~l~~-~tv~enl~~~~~~-----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 228 (325)
+|+||++.+++ .|++||+.++... . ...+.+..+++..++.+..+..+ ..|||||+||++|
T Consensus 79 ~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~l 149 (255)
T PRK11231 79 ALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL---------TDLSGGQRQRAFL 149 (255)
T ss_pred EEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc---------ccCCHHHHHHHHH
Confidence 99999998874 6999999875211 0 01122344455555554444332 5799999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHh
Q 020527 229 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 307 (325)
Q Consensus 229 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 307 (325)
|||++.+|++|||||||++||+.++..+.+.|+++.+ +|+|+|++||+++.+.. ||++++|++|+++..|+++++.
T Consensus 150 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~---~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 226 (255)
T PRK11231 150 AMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT---QGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM 226 (255)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhc
Confidence 9999999999999999999999999999999999864 37899999999999864 9999999999999999998886
Q ss_pred hcCHHHHHHHH
Q 020527 308 HKGRLYAKLVK 318 (325)
Q Consensus 308 ~~~~~~~~~~~ 318 (325)
.. ..+.+.+.
T Consensus 227 ~~-~~~~~~~~ 236 (255)
T PRK11231 227 TP-GLLRTVFD 236 (255)
T ss_pred CH-HHHHHHhC
Confidence 53 34455553
No 141
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-50 Score=379.49 Aligned_cols=227 Identities=30% Similarity=0.466 Sum_probs=185.0
Q ss_pred cEEEEEEEEECCCCC-------CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCH
Q 020527 79 HVQFVNISFHYPSRP-------TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI 151 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~-------~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~ 151 (325)
.|+++||++.|+.+. ...+|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 489999999996311 2469999999999999999999999999999999999999999999999999977654
Q ss_pred H---HHhcceEEEccCCc--Cc-cccHHHHHhcCCC--CCCC----HHHHHHHHHHcCHH-HHHHhCCCCcccccCCCCC
Q 020527 152 R---WLREKIGFVGQEPQ--LL-QMDIKSNIMYGCP--KDVK----NEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLL 218 (325)
Q Consensus 152 ~---~~r~~i~~v~Q~~~--l~-~~tv~enl~~~~~--~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L 218 (325)
. .+|++|+||||++. ++ ..|+.+++..+.. .... .+.+.++++.+++. ..+++. +.+|
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------p~~L 155 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRY---------PHMF 155 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCC---------CccC
Confidence 3 45678999999984 55 4799999864211 0111 12334445555543 233333 3679
Q ss_pred ChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEE
Q 020527 219 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 297 (325)
Q Consensus 219 SgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i 297 (325)
||||||||+|||||+.+|++||+||||++||+.++.+++++|.+++++ .|.|+|+||||++.+.. ||+|++|++|++
T Consensus 156 SgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~--~g~til~iTHdl~~~~~~adrv~vm~~G~i 233 (327)
T PRK11308 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQE--LGLSYVFISHDLSVVEHIADEVMVMYLGRC 233 (327)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999763 48899999999999975 999999999999
Q ss_pred EEEcChHHHhhc-CHHHHHH
Q 020527 298 IEVGNHAELLHK-GRLYAKL 316 (325)
Q Consensus 298 ~~~g~~~~l~~~-~~~~~~~ 316 (325)
++.|++++++++ ...|.+.
T Consensus 234 ve~g~~~~~~~~p~hpyt~~ 253 (327)
T PRK11308 234 VEKGTKEQIFNNPRHPYTQA 253 (327)
T ss_pred EEECCHHHHhcCCCCHHHHH
Confidence 999999999875 3345443
No 142
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-50 Score=369.98 Aligned_cols=217 Identities=24% Similarity=0.396 Sum_probs=184.4
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.|+++||+++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.+
T Consensus 7 ~l~i~~l~~~~~~~---~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 7 RLRGEQLTLGYGKY---TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred EEEEEEEEEEECCE---EEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 59999999999753 599999999999999999999999999999999999999999999999998776666667789
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCCC------CC---HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 020527 159 GFVGQEPQLL-QMDIKSNIMYGCPKD------VK---NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 228 (325)
Q Consensus 159 ~~v~Q~~~l~-~~tv~enl~~~~~~~------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 228 (325)
+|+||++.++ ..|++||+.++.... .. .+.+.++++..++.+..++.+ .+||||||||++|
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~Gq~qrv~l 154 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV---------DTLSGGQRQRAWI 154 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc---------ccCChHHHHHHHH
Confidence 9999999887 579999998752111 01 123344555555555444333 5799999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHh
Q 020527 229 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELL 307 (325)
Q Consensus 229 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~ 307 (325)
|||++.+|+++||||||++||+.++..+.+.|.++.++ .|.|||++|||++.+. .||++++|++|++++.|+++++.
T Consensus 155 aral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~--~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 155 AMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNRE--KGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred HHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999998652 3789999999999885 49999999999999999998876
Q ss_pred hc
Q 020527 308 HK 309 (325)
Q Consensus 308 ~~ 309 (325)
..
T Consensus 233 ~~ 234 (265)
T PRK10253 233 TA 234 (265)
T ss_pred hH
Confidence 53
No 143
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-50 Score=367.44 Aligned_cols=217 Identities=24% Similarity=0.416 Sum_probs=179.5
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHH-hcc
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REK 157 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~-r~~ 157 (325)
.++++|++++|++ .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... +..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 4899999999974 369999999999999999999999999999999999999999999999999876654443 456
Q ss_pred eEEEccCCcCcc-ccHHHHHhcCCCCCC----------------C----HHHHHHHHHHcCHHHHHHhCCCCcccccCCC
Q 020527 158 IGFVGQEPQLLQ-MDIKSNIMYGCPKDV----------------K----NEDIEWAAKQAYVHEFILSLPCGYETLVDDD 216 (325)
Q Consensus 158 i~~v~Q~~~l~~-~tv~enl~~~~~~~~----------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (325)
++|+||++.+|+ .|++||+.++..... . .+.+.+.++..++.+..++ ...
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~---------~~~ 152 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR---------QAG 152 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhC---------Chh
Confidence 999999999885 799999987521000 0 0112222333333333222 236
Q ss_pred CCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCC
Q 020527 217 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG 295 (325)
Q Consensus 217 ~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G 295 (325)
+||||||||++|||||+.+|++|||||||++||+.++..+.+.|.+++++ .|+|||++||+++.+.. ||++++|++|
T Consensus 153 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~--~~~tii~~sH~~~~~~~~~d~i~~l~~g 230 (255)
T PRK11300 153 NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNE--HNVTVLLIEHDMKLVMGISDRIYVVNQG 230 (255)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhh--cCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 79999999999999999999999999999999999999999999998652 37899999999999865 9999999999
Q ss_pred EEEEEcChHHHhhc
Q 020527 296 RIIEVGNHAELLHK 309 (325)
Q Consensus 296 ~i~~~g~~~~l~~~ 309 (325)
++++.|+++++.+.
T Consensus 231 ~i~~~~~~~~~~~~ 244 (255)
T PRK11300 231 TPLANGTPEEIRNN 244 (255)
T ss_pred eEEecCCHHHHhhC
Confidence 99999999988654
No 144
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-50 Score=373.18 Aligned_cols=219 Identities=33% Similarity=0.572 Sum_probs=185.8
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCC---CeEEECCEeCCCCCHHHHh
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD---GQIYIDGFPLTDLDIRWLR 155 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~---G~I~i~g~~i~~~~~~~~r 155 (325)
.|+++|++++|++. ..++++++||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++...+...++
T Consensus 5 ~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 5 IVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred eEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 48999999999642 2369999999999999999999999999999999999999998 8999999998766555667
Q ss_pred cceEEEccCCc--CccccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 020527 156 EKIGFVGQEPQ--LLQMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 228 (325)
Q Consensus 156 ~~i~~v~Q~~~--l~~~tv~enl~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 228 (325)
+++||+||++. +++.||+||+.++.. ..... +.+.++++.+++.++.++.+ .+|||||+||++|
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~LS~G~~qrv~l 154 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP---------ANLSGGQKQRVAI 154 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc---------ccCCHHHHHHHHH
Confidence 88999999984 447899999987521 11122 22444566666665555444 6799999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhh
Q 020527 229 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLH 308 (325)
Q Consensus 229 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 308 (325)
||||+.+|++|||||||++||+.++..+.+.|+++.++ .|+|||++||+++.+..||++++|++|++++.|++++++.
T Consensus 155 aral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~--~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 155 AGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKK--NNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998652 4789999999999987799999999999999999998765
Q ss_pred c
Q 020527 309 K 309 (325)
Q Consensus 309 ~ 309 (325)
.
T Consensus 233 ~ 233 (282)
T PRK13640 233 K 233 (282)
T ss_pred C
Confidence 3
No 145
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.1e-51 Score=374.14 Aligned_cols=215 Identities=34% Similarity=0.499 Sum_probs=181.1
Q ss_pred EEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHH----Hhc
Q 020527 81 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW----LRE 156 (325)
Q Consensus 81 ~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~----~r~ 156 (325)
.++|+++.|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++
T Consensus 26 ~~~~~~~~~~~~---~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQT---VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCCc---eEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 577999999753 6999999999999999999999999999999999999999999999999987654332 245
Q ss_pred ceEEEccCCcCc-cccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 020527 157 KIGFVGQEPQLL-QMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 230 (325)
Q Consensus 157 ~i~~v~Q~~~l~-~~tv~enl~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 230 (325)
+++|+||++.+| ..|++||+.++... ... .+.+.+.++.+++.+.+++.+ .+||||||||++|||
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~Gq~qrv~lAr 173 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP---------DELSGGMQQRVGLAR 173 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc---------ccCCHHHHHHHHHHH
Confidence 799999999888 57999999764210 111 123445556666655555544 579999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhc
Q 020527 231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 309 (325)
Q Consensus 231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 309 (325)
||+.+|++|||||||++||+.+++.+.+.|.++.++ .|+|+|++|||++.+.. ||++++|++|++++.|+++++++.
T Consensus 174 al~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~--~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 174 ALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAE--LQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999998642 47899999999998864 999999999999999999998754
No 146
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-50 Score=387.89 Aligned_cols=202 Identities=38% Similarity=0.577 Sum_probs=171.7
Q ss_pred ceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHH----hcceEEEccCCcCcc-cc
Q 020527 97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL----REKIGFVGQEPQLLQ-MD 171 (325)
Q Consensus 97 iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~----r~~i~~v~Q~~~l~~-~t 171 (325)
+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|.++...+...+ +++++|+||++.+|+ .|
T Consensus 43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~T 122 (400)
T PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMT 122 (400)
T ss_pred EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCC
Confidence 7999999999999999999999999999999999999999999999999977664432 467999999999884 79
Q ss_pred HHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCC
Q 020527 172 IKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATS 246 (325)
Q Consensus 172 v~enl~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts 246 (325)
|+||+.++... ... .+++.++++.+++.++.++.+ .+|||||||||+|||||+.+|++|||||||+
T Consensus 123 v~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~---------~~LSgGq~QRv~LArAL~~~P~iLLLDEPts 193 (400)
T PRK10070 123 VLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP---------DELSGGMRQRVGLARALAINPDILLMDEAFS 193 (400)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc---------ccCCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 99999875211 111 123344555555555444443 6799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhc
Q 020527 247 ALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 309 (325)
Q Consensus 247 ~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 309 (325)
+||+.++..+.+.|.+++++ .|+|||++|||++++.. ||++++|++|++++.|++++++..
T Consensus 194 ~LD~~~r~~l~~~L~~l~~~--~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~ 255 (400)
T PRK10070 194 ALDPLIRTEMQDELVKLQAK--HQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN 255 (400)
T ss_pred cCCHHHHHHHHHHHHHHHHH--CCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhC
Confidence 99999999999999998653 47899999999999864 999999999999999999998764
No 147
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.7e-51 Score=362.80 Aligned_cols=208 Identities=34% Similarity=0.525 Sum_probs=173.0
Q ss_pred EEEEEEEEECCCCC-CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 80 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 80 i~~~~v~~~y~~~~-~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
|+++|++++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 47899999997511 1369999999999999999999999999999999999999999999999998753 35679
Q ss_pred EEEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 020527 159 GFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 232 (325)
Q Consensus 159 ~~v~Q~~~l~~-~tv~enl~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 232 (325)
+|+||++.+|+ .|++||+.++.. .... .+.+.+.++..++.+.+++.+ .+||||||||++|||||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrl~la~al 146 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP---------HQLSGGMRQRVALARAL 146 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc---------ccCCHHHHHHHHHHHHH
Confidence 99999998885 799999976421 1111 123444555555555444433 57999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEe--CCEEEEEcCh
Q 020527 233 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVID--DGRIIEVGNH 303 (325)
Q Consensus 233 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~--~G~i~~~g~~ 303 (325)
+.+|+++||||||++||+.++..+.+.|+++.++ .|+|||++||+++.+. .||++++|+ +|++++.++.
T Consensus 147 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 147 AVDPDVLLLDEPFSALDALTREQLQEELLDIWRE--TGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH--cCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999999999998642 3789999999999875 499999999 7999988764
No 148
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-51 Score=369.94 Aligned_cols=221 Identities=37% Similarity=0.536 Sum_probs=193.5
Q ss_pred cEEEEEEEEECCCCC---------------------CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCC
Q 020527 79 HVQFVNISFHYPSRP---------------------TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 137 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~---------------------~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G 137 (325)
.|+++||+|-|+.+. ...-++|+||+|++||++.|.|-||||||||+|++.+|++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 588899998887521 12357899999999999999999999999999999999999999
Q ss_pred eEEECCEeCCCCCHHHH----hcceEEEccCCcCc-cccHHHHHhcCCC-----CCCCHHHHHHHHHHcCHHHHHHhCCC
Q 020527 138 QIYIDGFPLTDLDIRWL----REKIGFVGQEPQLL-QMDIKSNIMYGCP-----KDVKNEDIEWAAKQAYVHEFILSLPC 207 (325)
Q Consensus 138 ~I~i~g~~i~~~~~~~~----r~~i~~v~Q~~~l~-~~tv~enl~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (325)
+|+++|.++..++.+++ |+++++|||+..|+ +.||.||+.||.. .....++..++++.++++.+-+++|
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp- 162 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP- 162 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc-
Confidence 99999999998886543 46799999999998 5899999999853 1222344566788888888888877
Q ss_pred CcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-c
Q 020527 208 GYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-V 286 (325)
Q Consensus 208 ~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~ 286 (325)
++|||||||||.|||||+.+|+|||+|||||+|||--+.++.+.|.++.++ -++|||+||||++++-+ .
T Consensus 163 --------~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~--l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 163 --------NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAK--LKKTIVFITHDLDEALRIG 232 (386)
T ss_pred --------ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHH--hCCeEEEEecCHHHHHhcc
Confidence 679999999999999999999999999999999999999999999999775 47899999999999855 8
Q ss_pred CEEEEEeCCEEEEEcChHHHhhcC
Q 020527 287 DRIVVIDDGRIIEVGNHAELLHKG 310 (325)
Q Consensus 287 d~v~~l~~G~i~~~g~~~~l~~~~ 310 (325)
|||.+|++|+|+..|+|++++.++
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~P 256 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNP 256 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCc
Confidence 999999999999999999998753
No 149
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-50 Score=367.54 Aligned_cols=220 Identities=29% Similarity=0.486 Sum_probs=179.8
Q ss_pred ccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC-----CCCeEEECCEeCCCCCHH
Q 020527 78 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDLDIR 152 (325)
Q Consensus 78 ~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~-----~~G~I~i~g~~i~~~~~~ 152 (325)
..|+++||+++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+..
T Consensus 2 ~~l~~~~l~~~~~~~---~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 78 (250)
T PRK14247 2 NKIEIRDLKVSFGQV---EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVI 78 (250)
T ss_pred ceEEEEeeEEEECCe---eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHH
Confidence 358999999999753 599999999999999999999999999999999999974 699999999998776666
Q ss_pred HHhcceEEEccCCcCc-cccHHHHHhcCCCC-C--CCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHH
Q 020527 153 WLREKIGFVGQEPQLL-QMDIKSNIMYGCPK-D--VKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 224 (325)
Q Consensus 153 ~~r~~i~~v~Q~~~l~-~~tv~enl~~~~~~-~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~Q 224 (325)
.+++.|+|+||++.++ ..|++||+.++... . ... +.+.++++.+++.+.+.. .......+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~~~~LSgG~~q 153 (250)
T PRK14247 79 ELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKD-----RLDAPAGKLSGGQQQ 153 (250)
T ss_pred HHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhh-----hhcCCcccCCHHHHH
Confidence 7788999999999866 68999999865211 1 011 122333333333211100 011223679999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcCh
Q 020527 225 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNH 303 (325)
Q Consensus 225 Rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~ 303 (325)
|++|||||+.+|+++||||||++||+.++..+.+.|+++. +++|+|++|||++.+. .||++++|++|++++.|++
T Consensus 154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~----~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 229 (250)
T PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK----KDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPT 229 (250)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh----cCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCH
Confidence 9999999999999999999999999999999999999984 2679999999999885 5999999999999999999
Q ss_pred HHHhhc
Q 020527 304 AELLHK 309 (325)
Q Consensus 304 ~~l~~~ 309 (325)
+++.+.
T Consensus 230 ~~~~~~ 235 (250)
T PRK14247 230 REVFTN 235 (250)
T ss_pred HHHHcC
Confidence 998764
No 150
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1.1e-50 Score=360.74 Aligned_cols=203 Identities=36% Similarity=0.551 Sum_probs=169.9
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCH---HHHhc
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI---RWLRE 156 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~---~~~r~ 156 (325)
|+++|++++|+++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++
T Consensus 2 l~~~~l~~~~~~~--~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPGG--VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCCC--ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 7899999999522 369999999999999999999999999999999999999999999999999876543 23567
Q ss_pred ceEEEccCCcCc-cccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 020527 157 KIGFVGQEPQLL-QMDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 230 (325)
Q Consensus 157 ~i~~v~Q~~~l~-~~tv~enl~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 230 (325)
.++|+||++.+| ..|++||+.++.. .... .+.+.++++..++.+..++.+ .+||||||||++|||
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~la~ 150 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP---------EQLSGGEQQRVAIAR 150 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh---------hhCCHHHHHHHHHHH
Confidence 899999999888 4799999976421 0111 123344555555554444333 579999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCE
Q 020527 231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR 296 (325)
Q Consensus 231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~ 296 (325)
||+.+|++|||||||++||+.++..+.+.|+++++ +|+|+|++||+++.+.. ||++++|++|+
T Consensus 151 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 151 AIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK---RGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999999864 37899999999999875 99999999984
No 151
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-50 Score=366.55 Aligned_cols=219 Identities=32% Similarity=0.470 Sum_probs=178.3
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC-----CCCeEEECCEeCCC--CCH
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD--LDI 151 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~-----~~G~I~i~g~~i~~--~~~ 151 (325)
.|+++|++++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++.. ...
T Consensus 7 ~l~~~~l~~~~~~~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 7 IIETENLNLFYTDF---KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred eEEEeeeEEEeCCc---eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 59999999999743 599999999999999999999999999999999999997 48999999998753 233
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCC-C-CC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527 152 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-D-VK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 225 (325)
Q Consensus 152 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~-~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR 225 (325)
..+++.|+|+||++.+|..||+||+.++... . .. .+.+..+++.+++.+.+.. .......+||||||||
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-----~~~~~~~~LSgG~~qr 158 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKD-----KLNTNALSLSGGQQQR 158 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHH-----HHhCCcccCCHHHHHH
Confidence 4567889999999988889999999875311 1 11 1223334444433211110 0111236799999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChH
Q 020527 226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 304 (325)
Q Consensus 226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~ 304 (325)
++|||||+.+|++|||||||++||+.++..+.+.|+++++ +.|+|++||+++.+.. |||+++|++|++++.|+++
T Consensus 159 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~----~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 234 (254)
T PRK14273 159 LCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE----SYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTD 234 (254)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc----CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999842 5799999999999865 9999999999999999999
Q ss_pred HHhhc
Q 020527 305 ELLHK 309 (325)
Q Consensus 305 ~l~~~ 309 (325)
++.++
T Consensus 235 ~~~~~ 239 (254)
T PRK14273 235 ELFFN 239 (254)
T ss_pred HHHhC
Confidence 98754
No 152
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-50 Score=359.63 Aligned_cols=204 Identities=27% Similarity=0.481 Sum_probs=172.3
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 159 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~ 159 (325)
|+++|++++|+++ ++++|+||+|++| +++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..+++.++
T Consensus 1 i~~~~~~~~~~~~---~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGKK---RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECCE---EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 4789999999643 5999999999999 99999999999999999999999999999999999887654 56678899
Q ss_pred EEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 020527 160 FVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 233 (325)
Q Consensus 160 ~v~Q~~~l~~-~tv~enl~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 233 (325)
|+||++.+|. .|++||+.+... .... .+.+.++++..++.+..+..+ .+||||||||++|||||+
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~al~ 146 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKI---------GSLSGGMRRRVGIAQALV 146 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCch---------hhCCHHHHHHHHHHHHHh
Confidence 9999999885 699999976311 0111 223445566666655544333 579999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEc
Q 020527 234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVG 301 (325)
Q Consensus 234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g 301 (325)
.+|+++||||||++||+.+++.+.+.|+++++ +.|+|++|||++.+. .|||+++|++|++++.|
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~----~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 147 GDPSILIVDEPTAGLDPEERIRFRNLLSELGE----DRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC----CCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999863 479999999999986 49999999999998754
No 153
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-50 Score=371.11 Aligned_cols=216 Identities=28% Similarity=0.485 Sum_probs=179.4
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCC--CCHHHHhcc
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD--LDIRWLREK 157 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~--~~~~~~r~~ 157 (325)
|+++||+++|++. +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++.
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPDG--TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 7899999999632 359999999999999999999999999999999999999999999999999852 223456788
Q ss_pred eEEEccCC--cCccccHHHHHhcCCCC-CCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 020527 158 IGFVGQEP--QLLQMDIKSNIMYGCPK-DVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 230 (325)
Q Consensus 158 i~~v~Q~~--~l~~~tv~enl~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 230 (325)
|+|+||++ .++..|++||+.++... .... +.+.++++..++.++.++. ..+|||||+||++|||
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~---------~~~LS~Gq~qrv~lar 150 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKP---------PHHLSGGQKKRVAIAG 150 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCC---------hhhCCHHHHHHHHHHH
Confidence 99999997 35678999999875211 1111 2233344444444333322 3679999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhhc
Q 020527 231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 309 (325)
Q Consensus 231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~ 309 (325)
||+.+|+++||||||++||+.++..+.+.|.++.+ +|.|||++|||++.+. .||++++|++|++++.|++++++..
T Consensus 151 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~---~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 151 ILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK---EGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999864 3789999999999986 5999999999999999999988754
No 154
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=3.7e-50 Score=368.99 Aligned_cols=228 Identities=30% Similarity=0.410 Sum_probs=181.9
Q ss_pred cEEEEEEEEECCCC------CCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHH
Q 020527 79 HVQFVNISFHYPSR------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR 152 (325)
Q Consensus 79 ~i~~~~v~~~y~~~------~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~ 152 (325)
.|+++||+++|+.. .++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 38999999999631 124699999999999999999999999999999999999999999999999998765543
Q ss_pred ---HHhcceEEEccCCc--Cc-cccHHHHHhcCCC--CCCC----HHHHHHHHHHcCHH-HHHHhCCCCcccccCCCCCC
Q 020527 153 ---WLREKIGFVGQEPQ--LL-QMDIKSNIMYGCP--KDVK----NEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLS 219 (325)
Q Consensus 153 ---~~r~~i~~v~Q~~~--l~-~~tv~enl~~~~~--~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~LS 219 (325)
.+++.|+|+||++. ++ ..|++||+.++.. .... .+.+.++++..++. ...+ ....+||
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~---------~~~~~LS 152 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDAD---------KLPRQLS 152 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhh---------CChhhCC
Confidence 35678999999973 44 4799999965311 0111 11223333333332 1222 2235799
Q ss_pred hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEE
Q 020527 220 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRII 298 (325)
Q Consensus 220 gGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~ 298 (325)
||||||++|||||+.+|++|||||||++||+.++..+.+.|+++.++ .|+|||++|||++.+. .||++++|++|+++
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~--~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 230 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQA--FGTAYLFITHDLRLVQSFCQRVAVMDKGQIV 230 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCcEEEEEeCCHHHHHHHhcEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999998752 3789999999999986 49999999999999
Q ss_pred EEcChHHHhhcCH-HHHHHH
Q 020527 299 EVGNHAELLHKGR-LYAKLV 317 (325)
Q Consensus 299 ~~g~~~~l~~~~~-~~~~~~ 317 (325)
+.|+++++....+ .++.+.
T Consensus 231 ~~g~~~~~~~~~~~~~~~~~ 250 (265)
T TIGR02769 231 EECDVAQLLSFKHPAGRNLQ 250 (265)
T ss_pred EECCHHHHcCCCCHHHHHHH
Confidence 9999999987444 344343
No 155
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.1e-50 Score=359.93 Aligned_cols=203 Identities=37% Similarity=0.625 Sum_probs=169.2
Q ss_pred EEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 020527 81 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 160 (325)
Q Consensus 81 ~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~ 160 (325)
+++|++++|++. .+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 378999999752 1369999999999999999999999999999999999999999999999999876665667788999
Q ss_pred EccCCc--CccccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 020527 161 VGQEPQ--LLQMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 233 (325)
Q Consensus 161 v~Q~~~--l~~~tv~enl~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 233 (325)
+||++. ++..|++||+.++... ... ...+.+.++..++.+.+++.+ ..||||||||++|||||+
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~laral~ 150 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSP---------FTLSGGQKQRVAIAGVLA 150 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCc---------ccCCHHHHHHHHHHHHHh
Confidence 999984 4578999999764211 111 122334455555554444333 579999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCE
Q 020527 234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR 296 (325)
Q Consensus 234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~ 296 (325)
.+|++|||||||++||+.++..+.+.|.++++ +|+|||++|||++.+.. ||++++|++|+
T Consensus 151 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~---~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 151 MDPDILLLDEPTAGLDPAGRRELLELLKKLKA---EGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999999864 37899999999999876 99999999984
No 156
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=3.3e-50 Score=366.58 Aligned_cols=216 Identities=31% Similarity=0.493 Sum_probs=180.9
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCC---------
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD--------- 150 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~--------- 150 (325)
|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 478999999974 36999999999999999999999999999999999999999999999999886432
Q ss_pred ----HHHHhcceEEEccCCcCc-cccHHHHHhcCCC--CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCC
Q 020527 151 ----IRWLREKIGFVGQEPQLL-QMDIKSNIMYGCP--KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLS 219 (325)
Q Consensus 151 ----~~~~r~~i~~v~Q~~~l~-~~tv~enl~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LS 219 (325)
...+++.++|+||++.+| ..|+.||+.++.. .... .+.+.++++..++.+.+++.+ .+||
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS 148 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMP---------AQLS 148 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcCh---------hhcC
Confidence 134578899999999888 5899999986411 0111 122344455555554444433 5799
Q ss_pred hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEE
Q 020527 220 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRII 298 (325)
Q Consensus 220 gGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~ 298 (325)
||||||++|||||+.+|++|||||||++||+.++..+.+.|+++.++ .|.|+|++|||++.+. .|||+++|++|+++
T Consensus 149 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 149 GGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASE--HDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998653 3789999999999985 59999999999999
Q ss_pred EEcChHHHhhc
Q 020527 299 EVGNHAELLHK 309 (325)
Q Consensus 299 ~~g~~~~l~~~ 309 (325)
+.|+++++...
T Consensus 227 ~~g~~~~~~~~ 237 (252)
T TIGR03005 227 EQGKPDEIFRQ 237 (252)
T ss_pred EeCCHHHHhcC
Confidence 99999988754
No 157
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=2.3e-50 Score=360.81 Aligned_cols=206 Identities=28% Similarity=0.468 Sum_probs=171.8
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHH---HHhc
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLRE 156 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~---~~r~ 156 (325)
|+++|++++|++. +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+++
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLGG--RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecCC--CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 7899999999422 3699999999999999999999999999999999999999999999999998765432 3577
Q ss_pred ceEEEccCCcCc-cccHHHHHhcCCC-CCCCHH----HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 020527 157 KIGFVGQEPQLL-QMDIKSNIMYGCP-KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 230 (325)
Q Consensus 157 ~i~~v~Q~~~l~-~~tv~enl~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 230 (325)
.++|+||++.++ ..|++||+.++.. .....+ .+.++++..++.+..++.+ .+||||||||++|||
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~lar 150 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFP---------IQLSGGEQQRVGIAR 150 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCc---------hhCCHHHHHHHHHHH
Confidence 899999999875 6899999987521 111111 2334455555554444333 579999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEE
Q 020527 231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIE 299 (325)
Q Consensus 231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~ 299 (325)
||+.+|++|||||||++||+.+++.+.+.|.++++ ++.|+|++|||++.+.. ||++++|++|+++.
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 151 AVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR---VGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999999999999999864 37899999999999875 99999999999854
No 158
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-50 Score=369.65 Aligned_cols=219 Identities=31% Similarity=0.495 Sum_probs=182.7
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.|+++|++++|++. .+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++++
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 48999999999753 23599999999999999999999999999999999999999999999999998776666778899
Q ss_pred EEEccCCc-Cc-cccHHHHHhcCCCC-CCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 020527 159 GFVGQEPQ-LL-QMDIKSNIMYGCPK-DVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 231 (325)
Q Consensus 159 ~~v~Q~~~-l~-~~tv~enl~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 231 (325)
+|+||++. +| ..|+.+|+.++... .... +.+.++++..++.++.++. ..+||||||||++||||
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~~qrl~lara 156 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYE---------PNALSGGQKQRVAIAGV 156 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCC---------cccCCHHHHHHHHHHHH
Confidence 99999985 44 57899999875311 1111 1223344444444333322 35799999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhc
Q 020527 232 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK 309 (325)
Q Consensus 232 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 309 (325)
++.+|++|||||||++||+.++..+.+.|++++++ .|+|+|++||+++.+..|||+++|++|++++.|+++++...
T Consensus 157 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~--~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 157 LALNPSVIILDEATSMLDPDARQNLLDLVRKVKSE--HNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999998642 37899999999998867999999999999999999988664
No 159
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-50 Score=365.43 Aligned_cols=219 Identities=30% Similarity=0.456 Sum_probs=181.0
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC---CCCCeEEECCEeCCCCCHHHHh
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE---PSDGQIYIDGFPLTDLDIRWLR 155 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~---~~~G~I~i~g~~i~~~~~~~~r 155 (325)
.++++|+++.|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...+....+
T Consensus 2 ~~~~~~l~~~~~~~---~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGKK---QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECCE---eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 37899999999753 59999999999999999999999999999999999984 6999999999999776666677
Q ss_pred cceEEEccCCcCccccHHHHHhcCCCC-CC------CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 020527 156 EKIGFVGQEPQLLQMDIKSNIMYGCPK-DV------KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 228 (325)
Q Consensus 156 ~~i~~v~Q~~~l~~~tv~enl~~~~~~-~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 228 (325)
+.++|+||++.+|+.|++||+.++... .. ..+++.+.++.+++.+.+... ......+||||||||++|
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~~~~LS~G~~qrv~l 153 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDK-----LKQNALALSGGQQQRLCI 153 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHH-----hcCCcccCCHHHHHHHHH
Confidence 889999999999988999999875211 00 011233344444443221110 111235799999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHh
Q 020527 229 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELL 307 (325)
Q Consensus 229 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~ 307 (325)
||||+.+|+++||||||++||+.++..+.+.|.++. +++|+|++||+++.+. .||++++|++|++++.|++++++
T Consensus 154 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~----~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 154 ARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS----HNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFF 229 (246)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh----CCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999984 2689999999999886 59999999999999999999987
Q ss_pred hc
Q 020527 308 HK 309 (325)
Q Consensus 308 ~~ 309 (325)
+.
T Consensus 230 ~~ 231 (246)
T PRK14269 230 EN 231 (246)
T ss_pred hC
Confidence 64
No 160
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=4.6e-50 Score=360.24 Aligned_cols=211 Identities=28% Similarity=0.421 Sum_probs=174.6
Q ss_pred cEEEEEEEEECCCCCC-CCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHH---H
Q 020527 79 HVQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW---L 154 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~-~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~---~ 154 (325)
.|+++|++++|++... .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 4899999999975211 24999999999999999999999999999999999999999999999999987665432 2
Q ss_pred -hcceEEEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 020527 155 -REKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 227 (325)
Q Consensus 155 -r~~i~~v~Q~~~l~~-~tv~enl~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~ 227 (325)
++.++|+||++.+++ .|++||+.++.. .... .+++.++++..++.+.+++.+ ..||||||||++
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~Ge~qrl~ 156 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP---------AQLSGGEQQRVA 156 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh---------hhCCHHHHHHHH
Confidence 357999999998885 799999976421 1111 223444555555555444433 579999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEE
Q 020527 228 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEV 300 (325)
Q Consensus 228 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~ 300 (325)
|||||+.+|++|||||||++||+.++..+.+.|++++++ .|.|||++|||++.+..||++++|++|++++.
T Consensus 157 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 157 LARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNRE--HGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999998653 37899999999998877999999999999753
No 161
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=5.9e-50 Score=359.95 Aligned_cols=213 Identities=27% Similarity=0.439 Sum_probs=176.3
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHH-Hhcce
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREKI 158 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~-~r~~i 158 (325)
|+++||++.|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 1 l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQS---HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCCe---EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 4789999999743 6999999999999999999999999999999999999999999999999987665443 35689
Q ss_pred EEEccCCcCcc-ccHHHHHhcCCCCC-CC-HHHHHHHHHHcC-HHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 020527 159 GFVGQEPQLLQ-MDIKSNIMYGCPKD-VK-NEDIEWAAKQAY-VHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 234 (325)
Q Consensus 159 ~~v~Q~~~l~~-~tv~enl~~~~~~~-~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~ 234 (325)
+|+||++.+|+ .|+.||+.++.... .. .+...+.++..+ +.+..++ ...+||||||||++|||||+.
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~---------~~~~LS~G~~qrv~la~al~~ 148 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGR---------RGGDLSGGQQQQLAIARALVT 148 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhC---------ChhhCCHHHHHHHHHHHHHhc
Confidence 99999999885 69999998652211 11 111222333322 2222222 225799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHH
Q 020527 235 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL 306 (325)
Q Consensus 235 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l 306 (325)
+|+++||||||++||+.++..+.+.|.+++++ .++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAE--GGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHc--CCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999999998652 37899999999999875 999999999999999999887
No 162
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=2.5e-50 Score=376.52 Aligned_cols=213 Identities=22% Similarity=0.416 Sum_probs=179.4
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.++++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ....+++++
T Consensus 2 ~l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~i 77 (301)
T TIGR03522 2 SIRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNI 77 (301)
T ss_pred EEEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhce
Confidence 4899999999974 369999999999999999999999999999999999999999999999999865 344567889
Q ss_pred EEEccCCcCc-cccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 020527 159 GFVGQEPQLL-QMDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 232 (325)
Q Consensus 159 ~~v~Q~~~l~-~~tv~enl~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 232 (325)
||+||++.++ ..|+.||+.+... .... .+.+.++++.+++.+..++. ...||||||||++|||||
T Consensus 78 g~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~---------~~~LS~G~~qrv~la~al 148 (301)
T TIGR03522 78 GYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKK---------IGQLSKGYRQRVGLAQAL 148 (301)
T ss_pred EEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCc---------hhhCCHHHHHHHHHHHHH
Confidence 9999999988 4799999975311 1111 12233444444444433322 257999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527 233 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 308 (325)
Q Consensus 233 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 308 (325)
+.+|++|||||||+|||+.+++.+.+.++++++ ++|||++||+++++.. ||||++|++|+++..|+++++..
T Consensus 149 ~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~----~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 149 IHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK----DKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC----CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 999999999999999999999999999999842 5899999999998865 99999999999999999999854
No 163
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-50 Score=371.64 Aligned_cols=222 Identities=29% Similarity=0.463 Sum_probs=177.9
Q ss_pred EEEEEEEEECCCCC--CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCC----CHHH
Q 020527 80 VQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL----DIRW 153 (325)
Q Consensus 80 i~~~~v~~~y~~~~--~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~----~~~~ 153 (325)
|+++||+++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 89999999997421 13599999999999999999999999999999999999999999999999988653 2345
Q ss_pred HhcceEEEccCC--cCccccHHHHHhcCCC-CCCCHHHHHHHHHHcCHHHHHHhCCCC-cccccCCCCCChHHHHHHHHH
Q 020527 154 LREKIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCG-YETLVDDDLLSGGQKQRIAIA 229 (325)
Q Consensus 154 ~r~~i~~v~Q~~--~l~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~LSgGq~QRv~iA 229 (325)
+++.|+|+||++ .+|+.|++||+.++.. .....+.... .+.++++.+... ........+||||||||++||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la 157 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEA-----LAREKLALVGISESLFEKNPFELSGGQMRRVAIA 157 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHH
Confidence 678899999997 4677899999986421 1111211111 112233332221 011222367999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527 230 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 308 (325)
Q Consensus 230 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 308 (325)
|||+.+|++|||||||++||+.+++.+.+.|+++++ .|+|||++||+++.+.. ||++++|++|++++.|++++++.
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (280)
T PRK13649 158 GILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ---SGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234 (280)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999864 37899999999998864 99999999999999999988765
Q ss_pred c
Q 020527 309 K 309 (325)
Q Consensus 309 ~ 309 (325)
.
T Consensus 235 ~ 235 (280)
T PRK13649 235 D 235 (280)
T ss_pred C
Confidence 4
No 164
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-50 Score=363.19 Aligned_cols=216 Identities=28% Similarity=0.452 Sum_probs=178.5
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCC------CCHH
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD------LDIR 152 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~------~~~~ 152 (325)
.|+++|++++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ....
T Consensus 2 ~l~~~~l~~~~~~~---~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T PRK11124 2 SIQLNGINCFYGAH---QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred EEEEEeeEEEECCe---eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHH
Confidence 48999999999753 59999999999999999999999999999999999999999999999998731 1234
Q ss_pred HHhcceEEEccCCcCcc-ccHHHHHhcCCC--CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527 153 WLREKIGFVGQEPQLLQ-MDIKSNIMYGCP--KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 225 (325)
Q Consensus 153 ~~r~~i~~v~Q~~~l~~-~tv~enl~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR 225 (325)
.++++|+|+||++.+|+ .|++||+.+... .... ...+.+.++..++.+++++.+ .+||||||||
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS~G~~qr 149 (242)
T PRK11124 79 ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFP---------LHLSGGQQQR 149 (242)
T ss_pred HHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh---------hhCCHHHHHH
Confidence 55778999999999884 799999964211 0111 112333444445544444333 5799999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChH
Q 020527 226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 304 (325)
Q Consensus 226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~ 304 (325)
++|||||+.+|+++||||||++||+.++..+.+.|+++++ +|+|+|++|||++.+.. ||++++|++|++++.|+++
T Consensus 150 v~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~ 226 (242)
T PRK11124 150 VAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE---TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred HHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999864 37899999999999864 9999999999999999988
Q ss_pred HHhhc
Q 020527 305 ELLHK 309 (325)
Q Consensus 305 ~l~~~ 309 (325)
++...
T Consensus 227 ~~~~~ 231 (242)
T PRK11124 227 CFTQP 231 (242)
T ss_pred HhcCc
Confidence 87543
No 165
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-50 Score=372.46 Aligned_cols=226 Identities=28% Similarity=0.479 Sum_probs=178.4
Q ss_pred ccEEEEEEEEECCCCC--CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCC----C-C
Q 020527 78 GHVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD----L-D 150 (325)
Q Consensus 78 ~~i~~~~v~~~y~~~~--~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~----~-~ 150 (325)
+.|+++|++++|+++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. . +
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 3589999999997531 1259999999999999999999999999999999999999999999999998742 1 2
Q ss_pred HHHHhcceEEEccCCc--CccccHHHHHhcCCCC-CCCHHHHHHHHHHcCHHHHHHhCCC-CcccccCCCCCChHHHHHH
Q 020527 151 IRWLREKIGFVGQEPQ--LLQMDIKSNIMYGCPK-DVKNEDIEWAAKQAYVHEFILSLPC-GYETLVDDDLLSGGQKQRI 226 (325)
Q Consensus 151 ~~~~r~~i~~v~Q~~~--l~~~tv~enl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~LSgGq~QRv 226 (325)
...+++.|+|+||++. ++..|++||+.++... ....+.... .+.++++.+.. .........+||||||||+
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv 159 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYK-----KVPELLKLVQLPEDYVKRSPFELSGGQKRRV 159 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCChhHhcCChhhCCHHHHHHH
Confidence 3456778999999973 5677999999875211 111211111 11222332221 0011122367999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHH
Q 020527 227 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAE 305 (325)
Q Consensus 227 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~ 305 (325)
+|||||+.+|++|||||||++||+.+++.+.+.|+++.++ .|+|||++||+++.+. .||++++|++|++++.|++++
T Consensus 160 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 237 (289)
T PRK13645 160 ALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKE--YKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFE 237 (289)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999998652 3789999999999885 599999999999999999988
Q ss_pred HhhcC
Q 020527 306 LLHKG 310 (325)
Q Consensus 306 l~~~~ 310 (325)
+++..
T Consensus 238 ~~~~~ 242 (289)
T PRK13645 238 IFSNQ 242 (289)
T ss_pred HhcCH
Confidence 76543
No 166
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-50 Score=366.51 Aligned_cols=206 Identities=32% Similarity=0.445 Sum_probs=176.1
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.|+++|++++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+++.+
T Consensus 12 ~l~i~~l~~~~~~~---~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 12 PLLLNAVSKRYGER---TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred cEEEEEEEEEECCc---ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 48999999999753 6999999999999999999999999999999999999999999999998753 346789
Q ss_pred EEEccCCcCcc-ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC
Q 020527 159 GFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 237 (325)
Q Consensus 159 ~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ 237 (325)
+|+||++.+|+ .||+||+.++.. ....+++.++++..++.+..++.+ .+||||||||++|||||+.+|+
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGqkqrl~laraL~~~p~ 153 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLK-GQWRDAALQALAAVGLADRANEWP---------AALSGGQKQRVALARALIHRPG 153 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhccc-chHHHHHHHHHHHcCChhHhcCCh---------hhCCHHHHHHHHHHHHHhcCCC
Confidence 99999998885 799999987532 112334455666666655444433 5799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChH
Q 020527 238 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA 304 (325)
Q Consensus 238 llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~ 304 (325)
+|||||||++||+.++..+.+.|.++.++ .++|||++|||++.+. .||++++|++|++++.++.+
T Consensus 154 lllLDEPt~~LD~~~~~~l~~~L~~~~~~--~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 154 LLLLDEPLGALDALTRIEMQDLIESLWQQ--HGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999999999998643 4789999999999885 49999999999999887654
No 167
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=7.5e-50 Score=361.94 Aligned_cols=223 Identities=24% Similarity=0.419 Sum_probs=178.2
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHH-Hhcc
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREK 157 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~-~r~~ 157 (325)
.|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.
T Consensus 2 ~i~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T TIGR03411 2 ILYLEGLSVSFDGF---KALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG 78 (242)
T ss_pred eEEEEeeEEEcCCe---EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcC
Confidence 37999999999753 5999999999999999999999999999999999999999999999999887665443 3457
Q ss_pred eEEEccCCcCcc-ccHHHHHhcCCCCCCCH-HH---HHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 020527 158 IGFVGQEPQLLQ-MDIKSNIMYGCPKDVKN-ED---IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 232 (325)
Q Consensus 158 i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 232 (325)
++|+||++.+|+ .|++||+.++....... .. .........+.++++.+............|||||+||++||||+
T Consensus 79 i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral 158 (242)
T TIGR03411 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLL 158 (242)
T ss_pred eeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 999999999885 69999998752211000 00 00000111223344443322111222367999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527 233 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 308 (325)
Q Consensus 233 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 308 (325)
+.+|++|||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 159 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~----~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 159 MQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG----KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred hcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc----CCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 999999999999999999999999999999853 5799999999999865 99999999999999999998865
No 168
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-50 Score=366.26 Aligned_cols=219 Identities=32% Similarity=0.540 Sum_probs=178.2
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC-----CCCCeEEECCEeCCC--CCH
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LDI 151 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~-----~~~G~I~i~g~~i~~--~~~ 151 (325)
.|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 4899999999974 359999999999999999999999999999999999974 589999999998854 233
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCC-CCC-C----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527 152 RWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDV-K----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 225 (325)
Q Consensus 152 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~-~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR 225 (325)
..+++.++|+||++.+|+.|++||+.++.. ... . .+.+..+++..++.+.+... ......+||||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~~~~LSgGq~qr 157 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDR-----LHESALGLSGGQQQR 157 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHH-----hhCCcccCCHHHHHH
Confidence 456788999999998887899999987521 111 1 12233344444442211100 011235799999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChH
Q 020527 226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA 304 (325)
Q Consensus 226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~ 304 (325)
|+|||||+.+|++|||||||++||+.++..+.+.|+++.+ ++|||++|||++.+. .||++++|++|++++.|+++
T Consensus 158 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~----~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 233 (253)
T PRK14242 158 LCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA----RYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTE 233 (253)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc----CCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999842 579999999999986 49999999999999999999
Q ss_pred HHhhc
Q 020527 305 ELLHK 309 (325)
Q Consensus 305 ~l~~~ 309 (325)
++++.
T Consensus 234 ~~~~~ 238 (253)
T PRK14242 234 QIFTR 238 (253)
T ss_pred HHHcC
Confidence 98754
No 169
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1.7e-50 Score=377.78 Aligned_cols=206 Identities=26% Similarity=0.414 Sum_probs=171.6
Q ss_pred EECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCc
Q 020527 87 FHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQ 166 (325)
Q Consensus 87 ~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 166 (325)
|+|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ....+++++||+||++.
T Consensus 1 k~y~~---~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~ 76 (302)
T TIGR01188 1 KVYGD---FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYAS 76 (302)
T ss_pred CeeCC---eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCC
Confidence 35653 369999999999999999999999999999999999999999999999999865 34456788999999998
Q ss_pred Cc-cccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEE
Q 020527 167 LL-QMDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILL 240 (325)
Q Consensus 167 l~-~~tv~enl~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~lll 240 (325)
++ ..|++||+.+... .... .+.+.++++.+++.+..++. ..+||||||||++|||||+.+|++||
T Consensus 77 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LSgG~~qrv~la~al~~~p~lll 147 (302)
T TIGR01188 77 VDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRP---------VGTYSGGMRRRLDIAASLIHQPDVLF 147 (302)
T ss_pred CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCc---------hhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 88 4799999976321 1111 12233444444444333322 35799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527 241 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 308 (325)
Q Consensus 241 lDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 308 (325)
|||||+|||+.++..+.+.|+++++ +|+|||++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 148 LDEPt~gLD~~~~~~l~~~l~~~~~---~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 148 LDEPTTGLDPRTRRAIWDYIRALKE---EGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHh---CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 9999999999999999999999964 37899999999999865 99999999999999999998754
No 170
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-49 Score=358.78 Aligned_cols=214 Identities=32% Similarity=0.490 Sum_probs=182.0
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 159 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~ 159 (325)
|+++||+++|++. ..|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 2 l~~~~l~~~~~~~-----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHHL-----PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVS 74 (232)
T ss_pred eEEEEEEEEECCc-----cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEE
Confidence 7899999999642 239999999999999999999999999999999999999999999998865433 246799
Q ss_pred EEccCCcCcc-ccHHHHHhcCCCCC-----CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 020527 160 FVGQEPQLLQ-MDIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 233 (325)
Q Consensus 160 ~v~Q~~~l~~-~tv~enl~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 233 (325)
|+||++.+|+ .|+.||+.++.... ...+++.++++..++.+.+++.+ ..||||||||++||||++
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~laral~ 145 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP---------GQLSGGQRQRVALARCLV 145 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc---------ccCCHHHHHHHHHHHHHh
Confidence 9999998885 69999998753111 11233555666677766665555 579999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhcCH
Q 020527 234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKGR 311 (325)
Q Consensus 234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~~ 311 (325)
.+|+++||||||++||+.+++.+.+.|+++.++ .|+|+|++|||++.+.. ||++++|++|++++.|+++++.+...
T Consensus 146 ~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~~~ 222 (232)
T PRK10771 146 REQPILLLDEPFSALDPALRQEMLTLVSQVCQE--RQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGKA 222 (232)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhChh
Confidence 999999999999999999999999999998652 37899999999999865 99999999999999999999887653
No 171
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=4.5e-50 Score=366.57 Aligned_cols=214 Identities=27% Similarity=0.428 Sum_probs=181.1
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 159 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~ 159 (325)
|+++|++++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 2 l~~~~l~~~~~~~---~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGGR---LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECCE---EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 6899999999753 6999999999999999999999999999999999999999999999999987776666677899
Q ss_pred EEccCCcCc-cccHHHHHhcCCCCC------C---CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 020527 160 FVGQEPQLL-QMDIKSNIMYGCPKD------V---KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 229 (325)
Q Consensus 160 ~v~Q~~~l~-~~tv~enl~~~~~~~------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA 229 (325)
|+||++.++ ..||+||+.++.... . ..+.+.++++.+++.+..++. ...||||||||++||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~~qrl~la 149 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRD---------MSTLSGGERQRVHVA 149 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCC---------cccCCHHHHHHHHHH
Confidence 999998655 689999998752110 0 011233444444544433332 357999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhh
Q 020527 230 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLH 308 (325)
Q Consensus 230 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~ 308 (325)
||++.+|+++||||||++||+.++..+.+.|+++++ +|.|||++|||++.+. .||+|++|++|++++.|+++++..
T Consensus 150 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 150 RALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA---TGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 999999999999999999999999999999999864 3789999999999995 599999999999999999988765
No 172
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=2.7e-50 Score=358.07 Aligned_cols=204 Identities=32% Similarity=0.542 Sum_probs=170.8
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCH---HHHhc
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI---RWLRE 156 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~---~~~r~ 156 (325)
++++|++++|+++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4689999999642 359999999999999999999999999999999999999999999999999876543 23567
Q ss_pred ceEEEccCCcCcc-ccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 020527 157 KIGFVGQEPQLLQ-MDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 230 (325)
Q Consensus 157 ~i~~v~Q~~~l~~-~tv~enl~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 230 (325)
.++|+||++.+|+ .|++||+.++... ... .+.+.++++..++.+..++.+ .+||||||||++|||
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~lar 149 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALP---------AELSGGEQQRVAIAR 149 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh---------hhcCHHHHHHHHHHH
Confidence 8999999998885 7999999864211 111 123344555555555444433 579999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEE
Q 020527 231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 297 (325)
Q Consensus 231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i 297 (325)
||+.+|+++||||||++||+.+++.+.+.|+++.+ +|+|+|++||+++.+.. ||++++|++|++
T Consensus 150 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~---~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 150 AIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK---AGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999864 37899999999999875 999999999974
No 173
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-50 Score=365.11 Aligned_cols=219 Identities=31% Similarity=0.483 Sum_probs=177.7
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC-----CCCeEEECCEeCC--CCCH
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLT--DLDI 151 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~-----~~G~I~i~g~~i~--~~~~ 151 (325)
.|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++. ..+.
T Consensus 4 ~l~~~~l~~~~~~~---~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGSN---HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCCe---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 58999999999753 599999999999999999999999999999999999987 4999999999986 3344
Q ss_pred HHHhcceEEEccCCcCcc-ccHHHHHhcCCC-CCC--CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHH
Q 020527 152 RWLREKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDV--KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK 223 (325)
Q Consensus 152 ~~~r~~i~~v~Q~~~l~~-~tv~enl~~~~~-~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~ 223 (325)
..++++++|+||++.+|+ .|+.||+.++.. ... .. +.+.++++..++.+.+.. .......+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~~~~LS~G~~ 155 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKD-----RLNDYPSNLSGGQR 155 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhh-----hhccChhhCCHHHH
Confidence 456788999999999885 699999986421 110 11 122333333333211100 01112357999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcC
Q 020527 224 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 302 (325)
Q Consensus 224 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~ 302 (325)
||++|||||+.+|+++||||||++||+.++..+.+.|+++.+ ++|+|++|||++.+.. ||++++|++|++++.|+
T Consensus 156 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~----~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~ 231 (253)
T PRK14267 156 QRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK----EYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGP 231 (253)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh----CCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999999853 5799999999999865 99999999999999999
Q ss_pred hHHHhhc
Q 020527 303 HAELLHK 309 (325)
Q Consensus 303 ~~~l~~~ 309 (325)
+++++..
T Consensus 232 ~~~~~~~ 238 (253)
T PRK14267 232 TRKVFEN 238 (253)
T ss_pred HHHHHhC
Confidence 9998754
No 174
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=1.2e-50 Score=360.27 Aligned_cols=200 Identities=29% Similarity=0.554 Sum_probs=166.6
Q ss_pred EEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 020527 81 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 160 (325)
Q Consensus 81 ~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~ 160 (325)
+++||+++|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. .++++++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY 72 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence 36899999974 35999999999999999999999999999999999999999999999998763 35678999
Q ss_pred EccCCcC---ccccHHHHHhcCCCCC------C---CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 020527 161 VGQEPQL---LQMDIKSNIMYGCPKD------V---KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 228 (325)
Q Consensus 161 v~Q~~~l---~~~tv~enl~~~~~~~------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 228 (325)
+||++.+ ++.|++||+.++.... . ..+.+.++++..++.+..++.+ .+||||||||++|
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~l 143 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI---------GELSGGQQQRVLL 143 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc---------ccCCHHHHHHHHH
Confidence 9999876 4579999998753211 0 1123444555556655544433 5799999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEc
Q 020527 229 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 301 (325)
Q Consensus 229 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g 301 (325)
||||+.+|++|||||||++||+.++..+.+.|+++++ +|.|+|++|||++.+.. ||++++|++| +++.|
T Consensus 144 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 144 ARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR---EGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999999864 37899999999999865 9999999886 55543
No 175
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-50 Score=381.70 Aligned_cols=213 Identities=29% Similarity=0.490 Sum_probs=182.1
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCC----HHHHh
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRWLR 155 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~----~~~~r 155 (325)
|++ ||+++|++. .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ....+
T Consensus 2 l~~-~l~k~~~~~----~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGDL----CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCCE----EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 778 999999742 23 999999999999999999999999999999999999999999999875421 23456
Q ss_pred cceEEEccCCcCcc-ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 020527 156 EKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 234 (325)
Q Consensus 156 ~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~ 234 (325)
++++|+||++.+|+ .||+||+.++.. ....+++.+.++..++.+++++.+ .+|||||||||+|||||+.
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGq~qRvalaraL~~ 145 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMA-KSMVAQFDKIVALLGIEPLLDRYP---------GSLSGGEKQRVAIGRALLT 145 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhh-hhhHHHHHHHHHHcCCchhhhCCc---------ccCCHHHHHHHHHHHHHHc
Confidence 78999999999884 799999998642 222344556666666665555544 5799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhcC
Q 020527 235 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 310 (325)
Q Consensus 235 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~ 310 (325)
+|++|||||||++||+.++..+.+.|+++.++ .|+|+|+||||++++.. ||++++|++|++++.|++++++++.
T Consensus 146 ~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~--~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 146 APELLLMDEPLASLDLPRKRELLPYLERLARE--INIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220 (352)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence 99999999999999999999999999998753 47899999999998865 9999999999999999999998764
No 176
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.8e-50 Score=377.51 Aligned_cols=226 Identities=22% Similarity=0.350 Sum_probs=181.5
Q ss_pred cEEEEEEEEECCCC-CCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC----CCCCeEEECCEeCCCCCHHH
Q 020527 79 HVQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE----PSDGQIYIDGFPLTDLDIRW 153 (325)
Q Consensus 79 ~i~~~~v~~~y~~~-~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~----~~~G~I~i~g~~i~~~~~~~ 153 (325)
.|+++||+++|+.+ ....+++||||+|++||+++|+|+||||||||+++|+|+++ |++|+|+|+|+++...+...
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 58999999999532 12469999999999999999999999999999999999997 58999999999997766543
Q ss_pred H----hcceEEEccCCcC--c-cccHHHHHhcCCC---CC----CC----HHHHHHHHHHcCHHH---HHHhCCCCcccc
Q 020527 154 L----REKIGFVGQEPQL--L-QMDIKSNIMYGCP---KD----VK----NEDIEWAAKQAYVHE---FILSLPCGYETL 212 (325)
Q Consensus 154 ~----r~~i~~v~Q~~~l--~-~~tv~enl~~~~~---~~----~~----~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 212 (325)
+ ++.|+||||++.. + ..||.+|+.+... .. .. .+.+.+.++.+++.+ .+++.
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~------- 155 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSF------- 155 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCC-------
Confidence 3 3579999999863 3 4799999864210 00 00 122334444444431 22222
Q ss_pred cCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEE
Q 020527 213 VDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVV 291 (325)
Q Consensus 213 ~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~ 291 (325)
+.+|||||||||+|||||+.+|++||+||||++||+.++.++.++|+++.++ .|.|+|+||||++.+.. ||||++
T Consensus 156 --p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~--~g~tii~itHdl~~v~~~~dri~v 231 (330)
T PRK15093 156 --PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQN--NNTTILLISHDLQMLSQWADKINV 231 (330)
T ss_pred --chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh--cCCEEEEEECCHHHHHHhCCEEEE
Confidence 3679999999999999999999999999999999999999999999999753 48899999999999965 999999
Q ss_pred EeCCEEEEEcChHHHhhc-CHHHHH
Q 020527 292 IDDGRIIEVGNHAELLHK-GRLYAK 315 (325)
Q Consensus 292 l~~G~i~~~g~~~~l~~~-~~~~~~ 315 (325)
|++|+|++.|++++++.+ ...|.+
T Consensus 232 m~~G~ive~g~~~~i~~~p~~~y~~ 256 (330)
T PRK15093 232 LYCGQTVETAPSKELVTTPHHPYTQ 256 (330)
T ss_pred EECCEEEEECCHHHHHhCCCCHHHH
Confidence 999999999999998764 344544
No 177
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-49 Score=364.65 Aligned_cols=220 Identities=35% Similarity=0.551 Sum_probs=179.1
Q ss_pred ccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC-----CCCCeEEECCEeCCC--CC
Q 020527 78 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LD 150 (325)
Q Consensus 78 ~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~-----~~~G~I~i~g~~i~~--~~ 150 (325)
..|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+
T Consensus 12 ~~l~~~~l~~~~~~~---~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 12 SKIQVRNLNFYYGKF---HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred ceEEEEEEEEEeCCe---EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 359999999999743 59999999999999999999999999999999999986 589999999998853 33
Q ss_pred HHHHhcceEEEccCCcCccccHHHHHhcCCCC--CCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHH
Q 020527 151 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK--DVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 224 (325)
Q Consensus 151 ~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~Q 224 (325)
...++++|+|+||++.+|+.|++||+.++... .... +++.++++..++.+.+.. .......+|||||||
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~~~~LS~Gq~q 163 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKD-----KLHQSGYSLSGGQQQ 163 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH-----HHhcCCCCCCHHHHH
Confidence 45667889999999988889999999875211 1111 223334444443211100 001123579999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcCh
Q 020527 225 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNH 303 (325)
Q Consensus 225 Rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~ 303 (325)
|++|||||+.+|++|||||||++||+.+++.+.+.|+++++ +.|||++||+++.+. .||++++|++|++++.|++
T Consensus 164 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~----~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 239 (260)
T PRK10744 164 RLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ----DYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNT 239 (260)
T ss_pred HHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc----CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999852 579999999999986 4999999999999999999
Q ss_pred HHHhhc
Q 020527 304 AELLHK 309 (325)
Q Consensus 304 ~~l~~~ 309 (325)
+++++.
T Consensus 240 ~~~~~~ 245 (260)
T PRK10744 240 DTIFTK 245 (260)
T ss_pred HHHHhC
Confidence 998764
No 178
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=7.6e-50 Score=358.32 Aligned_cols=215 Identities=49% Similarity=0.802 Sum_probs=181.2
Q ss_pred ccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 020527 78 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 157 (325)
Q Consensus 78 ~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~ 157 (325)
+.++++|++++|+++...++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.
T Consensus 10 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 89 (226)
T cd03248 10 GIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSK 89 (226)
T ss_pred ceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhh
Confidence 35999999999975322369999999999999999999999999999999999999999999999998866555566788
Q ss_pred eEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCC
Q 020527 158 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRD 235 (325)
Q Consensus 158 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~ 235 (325)
++|+||++.+|+.|++||+.++... ..........+...+.++++.++.++.+... ..+||||||||++|||||+.+
T Consensus 90 i~~~~q~~~l~~~tv~~nl~~~~~~-~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~ 168 (226)
T cd03248 90 VSLVGQEPVLFARSLQDNIAYGLQS-CSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRN 168 (226)
T ss_pred EEEEecccHHHhhhHHHHhccccCC-CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 9999999988888999999876322 2223333344455677788877555544332 468999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEE
Q 020527 236 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRI 297 (325)
Q Consensus 236 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i 297 (325)
|+++||||||++||+.++..+.+.++++.+ ++|+|++|||++.+..||++++|++|++
T Consensus 169 p~llllDEPt~~LD~~~~~~l~~~l~~~~~----~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 169 PQVLILDEATSALDAESEQQVQQALYDWPE----RRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcC----CCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999853 4799999999999877999999999974
No 179
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=7.1e-50 Score=365.47 Aligned_cols=217 Identities=30% Similarity=0.450 Sum_probs=178.9
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCC---------
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL--------- 149 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~--------- 149 (325)
.|+++||++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (257)
T PRK10619 5 KLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKV 81 (257)
T ss_pred cEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccc
Confidence 4899999999974 3599999999999999999999999999999999999999999999999987531
Q ss_pred ----CHHHHhcceEEEccCCcCcc-ccHHHHHhcCCC--CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCC
Q 020527 150 ----DIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCP--KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLL 218 (325)
Q Consensus 150 ----~~~~~r~~i~~v~Q~~~l~~-~tv~enl~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 218 (325)
....++++++|+||++.+++ .|++||+.++.. ..... +++.++++..++.+.. ......+|
T Consensus 82 ~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--------~~~~~~~L 153 (257)
T PRK10619 82 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA--------QGKYPVHL 153 (257)
T ss_pred ccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh--------hhCCcccC
Confidence 12345778999999999885 799999976311 01111 1223333443333322 11223679
Q ss_pred ChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEE
Q 020527 219 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 297 (325)
Q Consensus 219 SgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i 297 (325)
|||||||++|||||+.+|++|||||||++||+.+++.+.+.|+++++ +|+|||++|||++.+.. |||+++|++|++
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~---~g~tiiivsH~~~~~~~~~d~i~~l~~G~i 230 (257)
T PRK10619 154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE---EGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230 (257)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999864 37899999999999875 999999999999
Q ss_pred EEEcChHHHhhc
Q 020527 298 IEVGNHAELLHK 309 (325)
Q Consensus 298 ~~~g~~~~l~~~ 309 (325)
++.|++++++..
T Consensus 231 ~~~~~~~~~~~~ 242 (257)
T PRK10619 231 EEEGAPEQLFGN 242 (257)
T ss_pred EEeCCHHHhhhC
Confidence 999999988754
No 180
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.4e-50 Score=354.45 Aligned_cols=204 Identities=34% Similarity=0.539 Sum_probs=172.0
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 159 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~ 159 (325)
|+++|++++|+++ . .|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 i~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGEQ---P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCCE---e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 4789999999642 2 39999999999999999999999999999999999999999999999875543 357899
Q ss_pred EEccCCcCcc-ccHHHHHhcCCCCC-----CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 020527 160 FVGQEPQLLQ-MDIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 233 (325)
Q Consensus 160 ~v~Q~~~l~~-~tv~enl~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 233 (325)
|+||++.+|+ .|++||+.++.... ..++.+.++++..++.+..++.+ .+||||||||++|||||+
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~ia~al~ 144 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP---------GELSGGERQRVALARVLV 144 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc---------ccCCHHHHHHHHHHHHHh
Confidence 9999999885 69999998753211 11233455666666665555544 579999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEc
Q 020527 234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 301 (325)
Q Consensus 234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g 301 (325)
.+|+++||||||++||+.++..+.+.|++++++ .++|+|++|||++.+.. ||++++|++|++++.|
T Consensus 145 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 145 RDKPVLLLDEPFAALDPALRAEMLDLVLDLHAE--TKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999998652 47899999999999865 9999999999998653
No 181
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.3e-50 Score=345.62 Aligned_cols=218 Identities=27% Similarity=0.426 Sum_probs=190.4
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
+|+.+|++++..++ .+|+++||++++||+++|+||||||||||||.|+|.+.|++|++.++|.+++++++.++.++-
T Consensus 1 mi~a~nls~~~~Gr---~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~r 77 (259)
T COG4559 1 MIRAENLSYSLAGR---RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHR 77 (259)
T ss_pred CeeeeeeEEEeecc---eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHh
Confidence 37899999998764 699999999999999999999999999999999999999999999999999999999998999
Q ss_pred EEEccCCcC-ccccHHHHHhcCCCCCC---C--HHH--HHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 020527 159 GFVGQEPQL-LQMDIKSNIMYGCPKDV---K--NED--IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 230 (325)
Q Consensus 159 ~~v~Q~~~l-~~~tv~enl~~~~~~~~---~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 230 (325)
+.+||+..+ |+.||+|.+.+|..+.. . ++. ..+++.++++..+..+.- ..|||||||||.+||
T Consensus 78 aVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y---------~~LSGGEqQRVqlAR 148 (259)
T COG4559 78 AVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDY---------RTLSGGEQQRVQLAR 148 (259)
T ss_pred hhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccch---------hhcCchHHHHHHHHH
Confidence 999999988 89999999999864321 1 112 455666666666554432 469999999999999
Q ss_pred HHcC------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcCh
Q 020527 231 AILR------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNH 303 (325)
Q Consensus 231 al~~------~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~ 303 (325)
.|++ ++++|+||||||+||+..+..++++.+++.++ |..|+.|-||++.+. +||||++|.+|++++.|+|
T Consensus 149 vLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~---g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p 225 (259)
T COG4559 149 VLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE---GGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSP 225 (259)
T ss_pred HHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc---CCcEEEEEccchHHHHhhheeeeeeCCeEeecCCH
Confidence 9975 45699999999999999999999999999864 689999999999985 5999999999999999999
Q ss_pred HHHhhcCH
Q 020527 304 AELLHKGR 311 (325)
Q Consensus 304 ~~l~~~~~ 311 (325)
+++++.+.
T Consensus 226 ~~vlt~Et 233 (259)
T COG4559 226 QDVLTDET 233 (259)
T ss_pred HHhcCHHH
Confidence 99998653
No 182
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.7e-50 Score=355.80 Aligned_cols=203 Identities=27% Similarity=0.523 Sum_probs=168.6
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 159 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~ 159 (325)
++++|++++|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 478999999974 359999999999999999999999999999999999999999999999987642 3567899
Q ss_pred EEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 020527 160 FVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 233 (325)
Q Consensus 160 ~v~Q~~~l~~-~tv~enl~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 233 (325)
|+||++.+++ .|++||+.+... .... .+.+.+.++..++.+..++. ..+||||||||++|||||+
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~~qrl~la~al~ 144 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKR---------VEELSKGNQQKVQFIAAVI 144 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCc---------HhhCCHHHHHHHHHHHHHh
Confidence 9999998885 799999976421 0111 12233344444444433332 2579999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEc
Q 020527 234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 301 (325)
Q Consensus 234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g 301 (325)
.+|+++||||||++||+.++..+.+.++++++ +++|||++|||++.+.. ||++++|++|++++.|
T Consensus 145 ~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~---~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 145 HDPELLILDEPFSGLDPVNVELLKDVIRELAR---AGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999999864 37899999999998865 9999999999998753
No 183
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=1.2e-49 Score=357.20 Aligned_cols=211 Identities=34% Similarity=0.492 Sum_probs=169.4
Q ss_pred EEEEEEEEECCCCC-CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCH---HHHh
Q 020527 80 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI---RWLR 155 (325)
Q Consensus 80 i~~~~v~~~y~~~~-~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~---~~~r 155 (325)
|+++||+++|+++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..++
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999996431 1259999999999999999999999999999999999999999999999999876553 4567
Q ss_pred cceEEEccCCc--Cc-cccHHHHHhcCCCC--CCCH-HHH----HHHHHHcCHH-HHHHhCCCCcccccCCCCCChHHHH
Q 020527 156 EKIGFVGQEPQ--LL-QMDIKSNIMYGCPK--DVKN-EDI----EWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQ 224 (325)
Q Consensus 156 ~~i~~v~Q~~~--l~-~~tv~enl~~~~~~--~~~~-~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~LSgGq~Q 224 (325)
+.++|+||++. ++ ..|++||+.++... .... +.. .+.++..++. ...+ ....+|||||||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~~LS~G~~q 152 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLN---------RYPHELSGGQRQ 152 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhh---------CCchhcCHHHHH
Confidence 88999999983 44 58999999754211 0111 111 1222333331 1222 223679999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEc
Q 020527 225 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVG 301 (325)
Q Consensus 225 Rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g 301 (325)
|++|||||+.+|++|||||||++||+.+++.+.+.|++++++ .|+|||++|||++.+. .||++++|++|++++.|
T Consensus 153 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 153 RVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEE--LGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999999998652 3789999999999987 59999999999998654
No 184
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-49 Score=365.75 Aligned_cols=220 Identities=31% Similarity=0.481 Sum_probs=179.6
Q ss_pred ccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC-----CCCeEEECCEeCCC--CC
Q 020527 78 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD--LD 150 (325)
Q Consensus 78 ~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~-----~~G~I~i~g~~i~~--~~ 150 (325)
..|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++.. .+
T Consensus 18 ~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~ 94 (267)
T PRK14235 18 IKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94 (267)
T ss_pred ceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccc
Confidence 36999999999974 3599999999999999999999999999999999999975 89999999999864 23
Q ss_pred HHHHhcceEEEccCCcCccccHHHHHhcCCC-CCC--C----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHH
Q 020527 151 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDV--K----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK 223 (325)
Q Consensus 151 ~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~-~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~ 223 (325)
...+++.++|+||++.+|+.|+.||+.++.. ... . .+.+.++++..++.+.+.. .......+||||||
T Consensus 95 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~~~~LSgGq~ 169 (267)
T PRK14235 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKD-----RLHEPGTGLSGGQQ 169 (267)
T ss_pred hHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhH-----HhhCCcccCCHHHH
Confidence 4456788999999999887799999987521 010 1 1223334444444321110 00112357999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcC
Q 020527 224 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 302 (325)
Q Consensus 224 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~ 302 (325)
||++|||||+.+|++|||||||++||+.++..+.+.|+++.+ +.|||++|||++.+.. ||++++|++|++++.|+
T Consensus 170 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~----~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~ 245 (267)
T PRK14235 170 QRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ----NYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGD 245 (267)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc----CCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999999853 5799999999999865 99999999999999999
Q ss_pred hHHHhhc
Q 020527 303 HAELLHK 309 (325)
Q Consensus 303 ~~~l~~~ 309 (325)
+++++.+
T Consensus 246 ~~~~~~~ 252 (267)
T PRK14235 246 TEKMFTN 252 (267)
T ss_pred HHHHHhC
Confidence 9998754
No 185
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=3.5e-49 Score=403.55 Aligned_cols=262 Identities=24% Similarity=0.353 Sum_probs=216.9
Q ss_pred CCcCHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcc-------ccc---c--------
Q 020527 13 GQVSPEQLTK-YVLY---CEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQF-------LSE---G-------- 70 (325)
Q Consensus 13 g~it~g~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-------~~~---~-------- 70 (325)
|.+|+|.+++ |..+ +..+..|+..+...+.+++++.++.+|+.++++.+++... .+. .
T Consensus 358 g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (659)
T TIGR00954 358 LEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSN 437 (659)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 7899998766 5554 5666899999999999999999999999999976432110 000 0
Q ss_pred -----ccccCCcccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEe
Q 020527 71 -----VKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 145 (325)
Q Consensus 71 -----~~~~~~~~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~ 145 (325)
.......+.|+++||+++|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 438 ~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-- 513 (659)
T TIGR00954 438 LVPGRGIVEYQDNGIKFENIPLVTPNG--DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-- 513 (659)
T ss_pred ccccccccccCCCeEEEEeeEEECCCC--CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC--
Confidence 0001122359999999999643 3699999999999999999999999999999999999999999998763
Q ss_pred CCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCC------CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC-CCCC
Q 020527 146 LTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP------KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD-DDLL 218 (325)
Q Consensus 146 i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L 218 (325)
+++++|+||+|.+|+.|++||+.++.. ....++++.++++.+++.+++++ +.|+++..+ ..+|
T Consensus 514 ---------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~~~~~L 583 (659)
T TIGR00954 514 ---------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQDWMDVL 583 (659)
T ss_pred ---------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccccccCC
Confidence 467999999999998899999998631 12345677888999999988877 667777655 3689
Q ss_pred ChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeC
Q 020527 219 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 294 (325)
Q Consensus 219 SgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~ 294 (325)
|||||||++|||||+++|+++||||||++||+.+++.+.+.+++. |+|+|+|||+++.+..||++++|+.
T Consensus 584 SgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~------~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 584 SGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF------GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc------CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 999999999999999999999999999999999999998888653 6799999999999888999999973
No 186
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-49 Score=364.38 Aligned_cols=220 Identities=30% Similarity=0.474 Sum_probs=177.4
Q ss_pred ccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC-----CCCeEEECCEeCCCCC--
Q 020527 78 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDLD-- 150 (325)
Q Consensus 78 ~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~-----~~G~I~i~g~~i~~~~-- 150 (325)
..|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++....
T Consensus 11 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 87 (258)
T PRK14268 11 PQIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87 (258)
T ss_pred eeEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccch
Confidence 35999999999974 3599999999999999999999999999999999999985 7999999999875432
Q ss_pred HHHHhcceEEEccCCcCccccHHHHHhcCCC-CCCCHH----HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527 151 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 225 (325)
Q Consensus 151 ~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR 225 (325)
...+++.++|+||++.+|+.|++||+.++.. .....+ .+.++++.+++.+.+. .........||||||||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~~~LSgG~~qr 162 (258)
T PRK14268 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS-----DRLKSPALSLSGGQQQR 162 (258)
T ss_pred HHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh-----hhhcCChhhCCHHHHHH
Confidence 3345778999999998888999999987421 111111 1223333333211100 00111235799999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChH
Q 020527 226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 304 (325)
Q Consensus 226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~ 304 (325)
++|||||+.+|++|||||||++||+.++..+.+.|+++.+ ++|||++|||++.+.. |||+++|++|++++.|+++
T Consensus 163 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~----~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 238 (258)
T PRK14268 163 LCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK----DYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTR 238 (258)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh----CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999842 6899999999999864 9999999999999999999
Q ss_pred HHhhc
Q 020527 305 ELLHK 309 (325)
Q Consensus 305 ~l~~~ 309 (325)
+++.+
T Consensus 239 ~~~~~ 243 (258)
T PRK14268 239 QIFHN 243 (258)
T ss_pred HHhcC
Confidence 98754
No 187
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=2.3e-49 Score=364.06 Aligned_cols=230 Identities=26% Similarity=0.444 Sum_probs=184.1
Q ss_pred cEEEEEEEEECCCC------CCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHH
Q 020527 79 HVQFVNISFHYPSR------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR 152 (325)
Q Consensus 79 ~i~~~~v~~~y~~~------~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~ 152 (325)
+|+++||+++|+.+ ...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++......
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999631 123699999999999999999999999999999999999999999999999998654444
Q ss_pred HHhcceEEEccCCc--Cc-cccHHHHHhcCCCC--CCC----HHHHHHHHHHcCH-HHHHHhCCCCcccccCCCCCChHH
Q 020527 153 WLREKIGFVGQEPQ--LL-QMDIKSNIMYGCPK--DVK----NEDIEWAAKQAYV-HEFILSLPCGYETLVDDDLLSGGQ 222 (325)
Q Consensus 153 ~~r~~i~~v~Q~~~--l~-~~tv~enl~~~~~~--~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~LSgGq 222 (325)
..++.++|+||++. ++ ..|+.+|+.++... ... .+.+.++++.+++ ....+.. ..+|||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~~LS~G~ 154 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYY---------PHMLAPGQ 154 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcC---------chhcCHHH
Confidence 45568999999985 34 36899998653110 111 1223344444444 2222222 25799999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEc
Q 020527 223 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 301 (325)
Q Consensus 223 ~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g 301 (325)
|||++|||||+.+|++|||||||++||+.+++.+.+.|.++.++ .|.|||++||+++.+.. ||++++|++|++++.|
T Consensus 155 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 155 KQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEK--QGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH--cCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999998653 37899999999999875 9999999999999999
Q ss_pred ChHHHhhcC--HHHHHHHHH
Q 020527 302 NHAELLHKG--RLYAKLVKR 319 (325)
Q Consensus 302 ~~~~l~~~~--~~~~~~~~~ 319 (325)
+++++.+.. ..+..++..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~ 252 (267)
T PRK15112 233 STADVLASPLHELTKRLIAG 252 (267)
T ss_pred CHHHHhcCCCCHHHHHHHHh
Confidence 999987652 445566654
No 188
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=6.2e-50 Score=355.54 Aligned_cols=203 Identities=37% Similarity=0.537 Sum_probs=169.2
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCC--CCHHHHhcc
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD--LDIRWLREK 157 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~--~~~~~~r~~ 157 (325)
++++|++++|+++ ++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .....+++.
T Consensus 1 l~~~~l~~~~~~~---~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGDF---HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECCe---EeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 4789999999753 59999999999999999999999999999999999999999999999998843 233456788
Q ss_pred eEEEccCCcCcc-ccHHHHHhcCCC--CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 020527 158 IGFVGQEPQLLQ-MDIKSNIMYGCP--KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 230 (325)
Q Consensus 158 i~~v~Q~~~l~~-~tv~enl~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 230 (325)
++|+||++.+|+ .|++||+.++.. ..... +.+.++++..++.+.+++.+ .+||||||||++|||
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~ 148 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYP---------AQLSGGQQQRVAIAR 148 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCc---------cccCHHHHHHHHHHH
Confidence 999999998885 799999976421 11111 12333444455544444433 579999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEE
Q 020527 231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 297 (325)
Q Consensus 231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i 297 (325)
||+.+|++|||||||++||+.+++.+.+.|+++++ .|+|+|++||+++.+.. ||++++|++|++
T Consensus 149 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 149 ALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE---EGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999974 37899999999999865 999999999974
No 189
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=2.2e-49 Score=363.19 Aligned_cols=224 Identities=27% Similarity=0.404 Sum_probs=182.0
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCC---CCeEEECCEeCCCC-----C
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDL-----D 150 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~---~G~I~i~g~~i~~~-----~ 150 (325)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... .
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 4899999999974 36999999999999999999999999999999999999986 49999999987543 2
Q ss_pred HHHHhcceEEEccCCcCcc-ccHHHHHhcCCCCC-------------CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCC
Q 020527 151 IRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKD-------------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD 216 (325)
Q Consensus 151 ~~~~r~~i~~v~Q~~~l~~-~tv~enl~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (325)
...++++++|+||++.+|+ .|++||+.++.... .....+.++++..++.+..++. ..
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~ 151 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQR---------VS 151 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCC---------cc
Confidence 2445678999999998885 79999998753110 0012234444445554443332 25
Q ss_pred CCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCC
Q 020527 217 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDG 295 (325)
Q Consensus 217 ~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G 295 (325)
+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|+++.++ .|+|||++|||++.+. .||++++|++|
T Consensus 152 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~g~tvii~tH~~~~~~~~~d~i~~l~~g 229 (262)
T PRK09984 152 TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQN--DGITVVVTLHQVDYALRYCERIVALRQG 229 (262)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 79999999999999999999999999999999999999999999999653 3789999999999875 59999999999
Q ss_pred EEEEEcChHHHhhcCHHHHHHHH
Q 020527 296 RIIEVGNHAELLHKGRLYAKLVK 318 (325)
Q Consensus 296 ~i~~~g~~~~l~~~~~~~~~~~~ 318 (325)
++++.|+++++ +. ....++|.
T Consensus 230 ~i~~~g~~~~~-~~-~~~~~~~~ 250 (262)
T PRK09984 230 HVFYDGSSQQF-DN-ERFDHLYR 250 (262)
T ss_pred EEEEeCCHHHh-cc-HHHHHHHh
Confidence 99999999886 32 23444443
No 190
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=2.1e-49 Score=374.24 Aligned_cols=229 Identities=26% Similarity=0.408 Sum_probs=181.3
Q ss_pred cEEEEEEEEECCCC-CCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCC---CCeEEECCEeCCCCCHHHH
Q 020527 79 HVQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLDIRWL 154 (325)
Q Consensus 79 ~i~~~~v~~~y~~~-~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~---~G~I~i~g~~i~~~~~~~~ 154 (325)
.|+++|+++.|+.. ....+++||||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.|+|+++..++..++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 59999999999632 1246999999999999999999999999999999999999996 9999999999987765543
Q ss_pred ---h-cceEEEccCC--cCc-cccHHHHHhcCCC--CCCCHH----HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChH
Q 020527 155 ---R-EKIGFVGQEP--QLL-QMDIKSNIMYGCP--KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGG 221 (325)
Q Consensus 155 ---r-~~i~~v~Q~~--~l~-~~tv~enl~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgG 221 (325)
| +.|+||||++ .++ ..|+.+|+..... ...... .+.+.++.+++.+... .....+.+||||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~------~~~~~p~~LSgG 165 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARK------RMKMYPHEFSGG 165 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHH------HhcCCcccCCHH
Confidence 3 4799999998 455 4788888754211 111111 2223333333321000 001224689999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEE
Q 020527 222 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEV 300 (325)
Q Consensus 222 q~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~ 300 (325)
|+|||+|||||+.+|++||+||||++||+.++..++++|++++++ .|.|+|+||||++.+.. ||||++|++|+|++.
T Consensus 166 ~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~--~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 166 MRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKRE--FNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH--cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999999763 48899999999999865 999999999999999
Q ss_pred cChHHHhhc-CHHHHH
Q 020527 301 GNHAELLHK-GRLYAK 315 (325)
Q Consensus 301 g~~~~l~~~-~~~~~~ 315 (325)
|++++++++ ...|.+
T Consensus 244 g~~~~i~~~p~~pyt~ 259 (330)
T PRK09473 244 GNARDVFYQPSHPYSI 259 (330)
T ss_pred CCHHHHHhCCCCHHHH
Confidence 999999864 334544
No 191
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=1.4e-49 Score=380.21 Aligned_cols=212 Identities=28% Similarity=0.419 Sum_probs=175.1
Q ss_pred EEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCE----eCCCCCHHH---Hh-
Q 020527 84 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF----PLTDLDIRW---LR- 155 (325)
Q Consensus 84 ~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~----~i~~~~~~~---~r- 155 (325)
++.++|+. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+ ++...+... .|
T Consensus 29 ~~~~~~g~---~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~ 105 (382)
T TIGR03415 29 EILDETGL---VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRT 105 (382)
T ss_pred HHHHhhCC---EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhc
Confidence 34455643 36899999999999999999999999999999999999999999999997 454444333 23
Q ss_pred cceEEEccCCcCcc-ccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 020527 156 EKIGFVGQEPQLLQ-MDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 229 (325)
Q Consensus 156 ~~i~~v~Q~~~l~~-~tv~enl~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA 229 (325)
++++|+||++.+|+ .||+||+.++... ... .+...++++.+++.++.++.+ .+|||||||||+||
T Consensus 106 ~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~---------~~LSgGq~QRV~LA 176 (382)
T TIGR03415 106 HRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKP---------GELSGGMQQRVGLA 176 (382)
T ss_pred CCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHHH
Confidence 57999999999985 8999999876311 111 123344555555555444433 57999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhh
Q 020527 230 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLH 308 (325)
Q Consensus 230 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~ 308 (325)
|||+.+|+||||||||++||+.++..+.+.|.+++++ .++|+|+||||++++. .||||++|++|++++.|++++++.
T Consensus 177 RALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~--~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~ 254 (382)
T TIGR03415 177 RAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAK--LNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVL 254 (382)
T ss_pred HHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 9999999999999999999999999999999999753 4789999999999985 599999999999999999999976
Q ss_pred c
Q 020527 309 K 309 (325)
Q Consensus 309 ~ 309 (325)
.
T Consensus 255 ~ 255 (382)
T TIGR03415 255 N 255 (382)
T ss_pred C
Confidence 4
No 192
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=1.1e-49 Score=357.28 Aligned_cols=212 Identities=25% Similarity=0.424 Sum_probs=174.9
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.|+++||+++|+++ ++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 7 ~i~~~~l~~~~~~~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGDA---KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCCc---eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 48999999999743 599999999999999999999999999999999999999999999999998776666677889
Q ss_pred EEEccCCcCccccHHHHHhcCCC--CC-CCHHHHHHHHHHcCHH-HHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 020527 159 GFVGQEPQLLQMDIKSNIMYGCP--KD-VKNEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 234 (325)
Q Consensus 159 ~~v~Q~~~l~~~tv~enl~~~~~--~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~ 234 (325)
+|+||++.+|+.|++||+.++.. .. ...+.+.+.++..++. ...+ ....+|||||+||++|||||+.
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILT---------KNIAELSGGEKQRISLIRNLQF 154 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhc---------CCcccCCHHHHHHHHHHHHHhc
Confidence 99999999888899999976421 11 1122233344444442 1222 2236799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEe-CCEEEEEcChH
Q 020527 235 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVID-DGRIIEVGNHA 304 (325)
Q Consensus 235 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~-~G~i~~~g~~~ 304 (325)
+|+++||||||++||+.++..+.+.|.++.++ .|.|||++||+++.+..||++++|+ ++..+++|+++
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVRE--QNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 99999999999999999999999999998653 3789999999999987799999995 55566667654
No 193
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-49 Score=359.11 Aligned_cols=221 Identities=32% Similarity=0.549 Sum_probs=178.3
Q ss_pred cccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC-----CCCeEEECCEeCCC--C
Q 020527 77 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD--L 149 (325)
Q Consensus 77 ~~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~-----~~G~I~i~g~~i~~--~ 149 (325)
|+.|+++||++.|+++ ++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .
T Consensus 1 ~~~l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 77 (250)
T PRK14240 1 MGKISVKDLDLFYGDF---QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDI 77 (250)
T ss_pred CCeEEEEEEEEEECCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 4569999999999753 599999999999999999999999999999999999863 69999999998864 2
Q ss_pred CHHHHhcceEEEccCCcCccccHHHHHhcCCC-CCC-C----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHH
Q 020527 150 DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDV-K----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK 223 (325)
Q Consensus 150 ~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~-~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~ 223 (325)
+...+|+.++|+||++.+|+.|++||+.++.. ... . .+.+.++++..++.+.+.. .......+||||||
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-----~~~~~~~~LS~G~~ 152 (250)
T PRK14240 78 DVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKD-----RLKKSALGLSGGQQ 152 (250)
T ss_pred chHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHH-----HHhcCCCCCCHHHH
Confidence 34456788999999998888999999987521 111 1 1222333333333211110 00112357999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcC
Q 020527 224 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 302 (325)
Q Consensus 224 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~ 302 (325)
||++|||||+.+|++|||||||++||+.++..+.+.|+++. +++|||++||+++.+.. ||++++|++|++++.|+
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~ 228 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK----KDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGD 228 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh----cCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999984 26799999999998865 99999999999999999
Q ss_pred hHHHhhc
Q 020527 303 HAELLHK 309 (325)
Q Consensus 303 ~~~l~~~ 309 (325)
+++++..
T Consensus 229 ~~~~~~~ 235 (250)
T PRK14240 229 TVDLFTN 235 (250)
T ss_pred HHHHHhC
Confidence 9988754
No 194
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=4.1e-49 Score=349.11 Aligned_cols=202 Identities=33% Similarity=0.544 Sum_probs=172.7
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.++++|++++|+.. ...+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.|
T Consensus 6 ~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 84 (207)
T cd03369 6 EIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSL 84 (207)
T ss_pred eEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 58999999999742 13699999999999999999999999999999999999999999999999998766666678899
Q ss_pred EEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCE
Q 020527 159 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI 238 (325)
Q Consensus 159 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~l 238 (325)
+|+||++.+|+.|++||+.+.. ....+.+.+.++ ++ .....|||||+||++||||++.+|++
T Consensus 85 ~~v~q~~~~~~~tv~~~l~~~~--~~~~~~~~~~l~-------~~---------~~~~~LS~G~~qrv~laral~~~p~l 146 (207)
T cd03369 85 TIIPQDPTLFSGTIRSNLDPFD--EYSDEEIYGALR-------VS---------EGGLNLSQGQRQLLCLARALLKRPRV 146 (207)
T ss_pred EEEecCCcccCccHHHHhcccC--CCCHHHHHHHhh-------cc---------CCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 9999999988889999997642 122222222221 11 12357999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcCh
Q 020527 239 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNH 303 (325)
Q Consensus 239 lllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~ 303 (325)
+||||||++||+.++..+.+.|+++. +|+|+|++||+++.+..||++++|++|++++.|++
T Consensus 147 lllDEP~~~LD~~~~~~l~~~l~~~~----~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 147 LVLDEATASIDYATDALIQKTIREEF----TNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhc----CCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 99999999999999999999999873 37899999999999877999999999999987764
No 195
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=3.1e-49 Score=351.46 Aligned_cols=205 Identities=32% Similarity=0.526 Sum_probs=174.1
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 159 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~ 159 (325)
++++||+++|+. .++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ .+++.++
T Consensus 1 ~~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVS 73 (213)
T ss_pred CeEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceE
Confidence 468999999962 568999999999999999999999999999999999999999999999886533 3567899
Q ss_pred EEccCCcCcc-ccHHHHHhcCCCCC-----CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 020527 160 FVGQEPQLLQ-MDIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 233 (325)
Q Consensus 160 ~v~Q~~~l~~-~tv~enl~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 233 (325)
|+||++.+|. .|++||+.++.... .....+.++++..++.+..++.+ .+||||||||++||||++
T Consensus 74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~laral~ 144 (213)
T TIGR01277 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP---------EQLSGGQRQRVALARCLV 144 (213)
T ss_pred EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc---------ccCCHHHHHHHHHHHHHh
Confidence 9999999885 79999997642111 11234455666667766655554 579999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcC
Q 020527 234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 302 (325)
Q Consensus 234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~ 302 (325)
.+|+++||||||++||+.++..+.+.|+++.++ .+.|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 145 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~--~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 145 RPNPILLLDEPFSALDPLLREEMLALVKQLCSE--RQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999999998652 37899999999998864 99999999999998875
No 196
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-49 Score=362.78 Aligned_cols=219 Identities=28% Similarity=0.458 Sum_probs=177.4
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC-----CCCCeEEECCEeCCC--CCH
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LDI 151 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~-----~~~G~I~i~g~~i~~--~~~ 151 (325)
.|+++||+++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 13 ~l~i~nl~~~~~~~---~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~ 89 (269)
T PRK14259 13 IISLQNVTISYGTF---EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDP 89 (269)
T ss_pred eEEEEeEEEEECCE---EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCH
Confidence 59999999999753 59999999999999999999999999999999999987 689999999998753 344
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCCC-CC---HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 020527 152 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD-VK---NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 227 (325)
Q Consensus 152 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~ 227 (325)
..+++.++|+||++.+|+.|++||+.++.... .. .+.+.++++.+++...+.. .......+||||||||++
T Consensus 90 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-----~~~~~~~~LS~G~~qrl~ 164 (269)
T PRK14259 90 VEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKD-----KLNESGYSLSGGQQQRLC 164 (269)
T ss_pred HHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhh-----hhCCCcccCCHHHHHHHH
Confidence 56678899999999988779999998753211 11 1222333333332211110 011123579999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeC-----------C
Q 020527 228 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD-----------G 295 (325)
Q Consensus 228 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~-----------G 295 (325)
|||||+.+|++|||||||++||+.++..+.++|+++++ +.|||++||+++.+.. ||++++|++ |
T Consensus 165 laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~----~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g 240 (269)
T PRK14259 165 IARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK----NFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVG 240 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc----CCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccc
Confidence 99999999999999999999999999999999999842 5799999999998864 999999996 6
Q ss_pred EEEEEcChHHHhhc
Q 020527 296 RIIEVGNHAELLHK 309 (325)
Q Consensus 296 ~i~~~g~~~~l~~~ 309 (325)
++++.|++++++..
T Consensus 241 ~~~~~~~~~~~~~~ 254 (269)
T PRK14259 241 YLVEFNETKKIFNS 254 (269)
T ss_pred eEEEeCCHHHHHhC
Confidence 79999999999764
No 197
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-49 Score=362.16 Aligned_cols=226 Identities=30% Similarity=0.465 Sum_probs=185.2
Q ss_pred EEEEEEEEECCCCC-CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC-C----CCCeEEECCEeCCCCCHHH
Q 020527 80 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-P----SDGQIYIDGFPLTDLDIRW 153 (325)
Q Consensus 80 i~~~~v~~~y~~~~-~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~-~----~~G~I~i~g~~i~~~~~~~ 153 (325)
++++|++..|.... ...+++||||+|++||++||||+|||||||+.++|+|+++ | .+|+|.|+|+++-.++.++
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 68999999996532 2579999999999999999999999999999999999998 4 5799999999998887654
Q ss_pred H----hcceEEEccCCcC-c-c-ccHHHHHhcCCC--CCC-C----HHHHHHHHHHcCHHH---HHHhCCCCcccccCCC
Q 020527 154 L----REKIGFVGQEPQL-L-Q-MDIKSNIMYGCP--KDV-K----NEDIEWAAKQAYVHE---FILSLPCGYETLVDDD 216 (325)
Q Consensus 154 ~----r~~i~~v~Q~~~l-~-~-~tv~enl~~~~~--~~~-~----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 216 (325)
+ .+.|+||||+|.- + + .||.+.+.-... ... . .++..+.++.+++.+ .++.+| +
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP---------h 152 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYP---------H 152 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC---------c
Confidence 3 2579999999853 3 3 577666643211 111 1 223455666666542 455555 6
Q ss_pred CCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCC
Q 020527 217 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG 295 (325)
Q Consensus 217 ~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G 295 (325)
+|||||||||.||.||+.+|++||+||||++||...+.+++++|++++++ .|.|+|+||||+..+.. ||||+||..|
T Consensus 153 elSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e--~~~aiilITHDl~vva~~aDri~VMYaG 230 (316)
T COG0444 153 ELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQRE--KGTALILITHDLGVVAEIADRVAVMYAG 230 (316)
T ss_pred ccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcceEEEEECc
Confidence 89999999999999999999999999999999999999999999999874 69999999999998865 9999999999
Q ss_pred EEEEEcChHHHhhc-CHHHHHH
Q 020527 296 RIIEVGNHAELLHK-GRLYAKL 316 (325)
Q Consensus 296 ~i~~~g~~~~l~~~-~~~~~~~ 316 (325)
+|+|.|+.++++.+ .+-|.+.
T Consensus 231 ~iVE~g~~~~i~~~P~HPYT~~ 252 (316)
T COG0444 231 RIVEEGPVEEIFKNPKHPYTRG 252 (316)
T ss_pred EEEEeCCHHHHhcCCCChHHHH
Confidence 99999999999876 3445443
No 198
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-50 Score=339.40 Aligned_cols=217 Identities=32% Similarity=0.475 Sum_probs=186.1
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCC---------
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL--------- 149 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~--------- 149 (325)
.|+++|+.|+|+.. .+|++||++-++|+++.|+|.|||||||+||||.-|..|+.|+|.++|+.+.-.
T Consensus 6 ~l~v~dlHK~~G~~---eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ 82 (256)
T COG4598 6 ALEVEDLHKRYGEH---EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP 82 (256)
T ss_pred ceehhHHHhhcccc---hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence 58999999999864 599999999999999999999999999999999999999999999999887421
Q ss_pred -C---HHHHhcceEEEccCCcCc-cccHHHHHhcC------CCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCC
Q 020527 150 -D---IRWLREKIGFVGQEPQLL-QMDIKSNIMYG------CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLL 218 (325)
Q Consensus 150 -~---~~~~r~~i~~v~Q~~~l~-~~tv~enl~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 218 (325)
+ ...+|.+.++|||+.+|+ .+||.||+.-. .++....++....+.++++.+..+.+| ..|
T Consensus 83 ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP---------~~L 153 (256)
T COG4598 83 ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYP---------AHL 153 (256)
T ss_pred CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCc---------ccc
Confidence 1 234688899999999998 69999999653 111111233344555666666555555 579
Q ss_pred ChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEE
Q 020527 219 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 297 (325)
Q Consensus 219 SgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i 297 (325)
||||+||++|||||+.+|+++|+|||||+|||+-.-++++.++++++ .|+|+++|||.|.+++. +.+|+++++|.|
T Consensus 154 SGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAe---EgrTMv~VTHEM~FAR~Vss~v~fLh~G~i 230 (256)
T COG4598 154 SGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAE---EGRTMVVVTHEMGFARDVSSHVIFLHQGKI 230 (256)
T ss_pred CchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHH---hCCeEEEEeeehhHHHhhhhheEEeeccee
Confidence 99999999999999999999999999999999999999999999986 48999999999999987 899999999999
Q ss_pred EEEcChHHHhhcC
Q 020527 298 IEVGNHAELLHKG 310 (325)
Q Consensus 298 ~~~g~~~~l~~~~ 310 (325)
-+.|+|++++.+.
T Consensus 231 EE~G~P~qvf~nP 243 (256)
T COG4598 231 EEEGPPEQVFGNP 243 (256)
T ss_pred cccCChHHHhcCC
Confidence 9999999999763
No 199
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-49 Score=363.05 Aligned_cols=216 Identities=28% Similarity=0.384 Sum_probs=180.6
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCC--------CCeEEECCEeCCCCCH
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS--------DGQIYIDGFPLTDLDI 151 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~--------~G~I~i~g~~i~~~~~ 151 (325)
|+++|++++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++...+.
T Consensus 2 l~~~nl~~~~~~~---~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRHR---AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECCE---eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 7899999999653 6999999999999999999999999999999999999998 9999999999876666
Q ss_pred HHHhcceEEEccCCcC-ccccHHHHHhcCCCCC------CC---HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChH
Q 020527 152 RWLREKIGFVGQEPQL-LQMDIKSNIMYGCPKD------VK---NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGG 221 (325)
Q Consensus 152 ~~~r~~i~~v~Q~~~l-~~~tv~enl~~~~~~~------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgG 221 (325)
..+++.++|+||++.+ +..|++||+.++.... .. .+.+.++++..++.+..++ ...+||||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LSgG 149 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGR---------DVTTLSGG 149 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcC---------CcccCCHH
Confidence 6667789999999864 5789999998753111 00 1123334444444443322 23679999
Q ss_pred HHHHHHHHHHHc---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEE
Q 020527 222 QKQRIAIARAIL---------RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVV 291 (325)
Q Consensus 222 q~QRv~iAral~---------~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~ 291 (325)
|||||+|||||+ .+|++|||||||++||+.++..+.+.|+++.++ .|+|||++|||++.+. .||++++
T Consensus 150 ~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tviiisH~~~~~~~~~d~i~~ 227 (272)
T PRK13547 150 ELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARD--WNLGVLAIVHDPNLAARHADRIAM 227 (272)
T ss_pred HHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHh--cCCEEEEEECCHHHHHHhCCEEEE
Confidence 999999999999 599999999999999999999999999998652 3789999999999986 5999999
Q ss_pred EeCCEEEEEcChHHHhhc
Q 020527 292 IDDGRIIEVGNHAELLHK 309 (325)
Q Consensus 292 l~~G~i~~~g~~~~l~~~ 309 (325)
|++|++++.|+++++.+.
T Consensus 228 l~~G~i~~~g~~~~~~~~ 245 (272)
T PRK13547 228 LADGAIVAHGAPADVLTP 245 (272)
T ss_pred EECCeEEEecCHHHHcCH
Confidence 999999999999988653
No 200
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-49 Score=361.94 Aligned_cols=219 Identities=29% Similarity=0.459 Sum_probs=176.4
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC-----CCCCeEEECCEeCCCC--CH
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTDL--DI 151 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~-----~~~G~I~i~g~~i~~~--~~ 151 (325)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++... +.
T Consensus 21 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 21 ILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred eEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 4899999999974 369999999999999999999999999999999999864 7999999999998642 23
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCC-CC-CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527 152 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 225 (325)
Q Consensus 152 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~-~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR 225 (325)
..++++++|+||++.+|+.|++||+.++... .. .. +.+..+++..++...+. ........+||||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~~~LSgGq~qr 172 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-----DRLHSSALSLSGGQQQR 172 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-----HHHhcCcccCCHHHHHH
Confidence 4567789999999998878999999865211 11 11 11222333333211000 00111236799999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChH
Q 020527 226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA 304 (325)
Q Consensus 226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~ 304 (325)
++|||||+.+|++|||||||++||+.++..+.+.|+++.+ +.|||++|||++.+. .|||+++|++|++++.|+++
T Consensus 173 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~----~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 248 (268)
T PRK14248 173 LCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE----EYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTE 248 (268)
T ss_pred HHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc----CCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999853 479999999999886 59999999999999999999
Q ss_pred HHhhc
Q 020527 305 ELLHK 309 (325)
Q Consensus 305 ~l~~~ 309 (325)
++++.
T Consensus 249 ~~~~~ 253 (268)
T PRK14248 249 QIFTS 253 (268)
T ss_pred HHHhC
Confidence 98764
No 201
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-49 Score=359.58 Aligned_cols=219 Identities=29% Similarity=0.463 Sum_probs=177.4
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC--C---CCCeEEECCEeCCC--CCH
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--P---SDGQIYIDGFPLTD--LDI 151 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~--~---~~G~I~i~g~~i~~--~~~ 151 (325)
.|+++|+++.|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++.. ...
T Consensus 12 ~l~i~~l~~~~~~~---~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQH---HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECCe---eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 59999999999743 59999999999999999999999999999999999997 3 59999999998853 233
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCC-C-CCHH----HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527 152 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-D-VKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 225 (325)
Q Consensus 152 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~-~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR 225 (325)
..+++.++|+||++.+|+.|++||+.++... . ...+ .+.++++..++.+.+.. .......+||||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~l~~~~~~LS~Gq~qr 163 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKD-----RLHTQALSLSGGQQQR 163 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhh-----hhhCCcccCCHHHHHH
Confidence 4567889999999998877999999875211 1 1111 12223333333221100 0011235799999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChH
Q 020527 226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA 304 (325)
Q Consensus 226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~ 304 (325)
++|||||+.+|+++||||||++||+.++..+.+.|.++++ ++|+|++||+++.+. .|||+++|++|++++.|+++
T Consensus 164 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~----~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 239 (259)
T PRK14274 164 LCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE----KYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTN 239 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc----CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999999999852 579999999999886 49999999999999999999
Q ss_pred HHhhc
Q 020527 305 ELLHK 309 (325)
Q Consensus 305 ~l~~~ 309 (325)
+++++
T Consensus 240 ~~~~~ 244 (259)
T PRK14274 240 KMFSN 244 (259)
T ss_pred HHhhC
Confidence 98754
No 202
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-49 Score=360.17 Aligned_cols=205 Identities=30% Similarity=0.446 Sum_probs=170.6
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 159 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~ 159 (325)
|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +..++
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERG 73 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEE
Confidence 789999999975 3599999999999999999999999999999999999999999999999987532 24689
Q ss_pred EEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 020527 160 FVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 233 (325)
Q Consensus 160 ~v~Q~~~l~~-~tv~enl~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 233 (325)
|+||++.+++ .|++||+.++.. .... .+.+.+.++..++.+..++. ..+||||||||++|||||+
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~---------~~~LSgGq~qrl~laral~ 144 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRY---------IWQLSGGQRQRVGIARALA 144 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCC---------hhhCCHHHHHHHHHHHHHh
Confidence 9999998885 799999986421 1111 12233444555554443332 2579999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEe--CCEEEEEcCh
Q 020527 234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID--DGRIIEVGNH 303 (325)
Q Consensus 234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~--~G~i~~~g~~ 303 (325)
.+|++|||||||++||+.++..+.+.|+++.++ .|+|||++|||++.+.. ||++++|+ +|++++.++.
T Consensus 145 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~--~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 145 ANPQLLLLDEPFGALDAFTREQMQTLLLKLWQE--TGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 999999999999999999999999999998542 37899999999999865 99999998 5999988654
No 203
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=3.7e-49 Score=376.21 Aligned_cols=211 Identities=32% Similarity=0.502 Sum_probs=176.3
Q ss_pred EEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCC----HHHHhcceE
Q 020527 84 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRWLREKIG 159 (325)
Q Consensus 84 ~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~----~~~~r~~i~ 159 (325)
|++++|++. .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ....++.++
T Consensus 4 ~l~~~~~~~----~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGDF----SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECCE----EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 899999742 35 999999999999999999999999999999999999999999999885432 224567899
Q ss_pred EEccCCcCcc-ccHHHHHhcCCCCCCC---HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 020527 160 FVGQEPQLLQ-MDIKSNIMYGCPKDVK---NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 235 (325)
Q Consensus 160 ~v~Q~~~l~~-~tv~enl~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~ 235 (325)
|+||++.+|+ .||+||+.++...... .+.+.+.++..++.+..++.+ .+|||||||||+|||||+.+
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LSgGqkqRvalAraL~~~ 149 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLP---------GRLSGGEKQRVAIGRALLSS 149 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCCh---------hhCCHHHHHHHHHHHHHHcC
Confidence 9999999885 7999999886321111 122344555555554444433 67999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhcC
Q 020527 236 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 310 (325)
Q Consensus 236 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~ 310 (325)
|++|||||||++||+.+++.+.+.|+++.++ .|+|+|++|||++.+.. ||++++|++|++++.|++++++...
T Consensus 150 p~lllLDEPts~LD~~~~~~l~~~L~~l~~~--~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 223 (354)
T TIGR02142 150 PRLLLMDEPLAALDDPRKYEILPYLERLHAE--FGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223 (354)
T ss_pred CCEEEEcCCCcCCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCc
Confidence 9999999999999999999999999998753 37899999999999865 9999999999999999999987653
No 204
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=2.1e-49 Score=385.87 Aligned_cols=230 Identities=33% Similarity=0.486 Sum_probs=191.3
Q ss_pred cEEEEEEEEECCCC--------CCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeC--CC
Q 020527 79 HVQFVNISFHYPSR--------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL--TD 148 (325)
Q Consensus 79 ~i~~~~v~~~y~~~--------~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i--~~ 148 (325)
.++++||++.|..+ ....+++||||++++||++||||+||||||||.|+|+|+++|++|+|.++|.++ ..
T Consensus 280 ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~ 359 (539)
T COG1123 280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTG 359 (539)
T ss_pred eeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccccc
Confidence 48899999999741 135789999999999999999999999999999999999999999999999873 21
Q ss_pred CCHHHHhcceEEEccCCcC--c-cccHHHHHhcCCC--CC----CCHHHHHHHHHHcCHHH-HHHhCCCCcccccCCCCC
Q 020527 149 LDIRWLREKIGFVGQEPQL--L-QMDIKSNIMYGCP--KD----VKNEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLL 218 (325)
Q Consensus 149 ~~~~~~r~~i~~v~Q~~~l--~-~~tv~enl~~~~~--~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L 218 (325)
-.....|+++-++||||+- . ..||.+++..... .. ...+++.+.++..++.+ ++++.| ++|
T Consensus 360 ~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP---------~el 430 (539)
T COG1123 360 GELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYP---------HEL 430 (539)
T ss_pred chhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCc---------hhc
Confidence 1234567899999999963 3 5899999975421 11 11223555566666654 556655 689
Q ss_pred ChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEE
Q 020527 219 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 297 (325)
Q Consensus 219 SgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i 297 (325)
||||||||||||||+.+|++|++|||||+||+..+.++.++|++++++ .|.|.|+||||++.++. ||||++|++|+|
T Consensus 431 SGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e--~g~t~lfISHDl~vV~~i~drv~vm~~G~i 508 (539)
T COG1123 431 SGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEE--LGLTYLFISHDLAVVRYIADRVAVMYDGRI 508 (539)
T ss_pred CcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHH--hCCEEEEEeCCHHHHHhhCceEEEEECCeE
Confidence 999999999999999999999999999999999999999999999875 58999999999999986 999999999999
Q ss_pred EEEcChHHHhhc-CHHHHHHHHH
Q 020527 298 IEVGNHAELLHK-GRLYAKLVKR 319 (325)
Q Consensus 298 ~~~g~~~~l~~~-~~~~~~~~~~ 319 (325)
++.|+.++++++ .+.|.+.+..
T Consensus 509 VE~G~~~~v~~~p~h~Ytr~L~~ 531 (539)
T COG1123 509 VEEGPTEKVFENPQHPYTRKLLA 531 (539)
T ss_pred EEeCCHHHHhcCCCChHHHHHHH
Confidence 999999999876 5567665543
No 205
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=3.1e-49 Score=357.83 Aligned_cols=217 Identities=24% Similarity=0.295 Sum_probs=172.3
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCC--CCCCCeEEECCEeCCCCCHHHH-hc
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY--EPSDGQIYIDGFPLTDLDIRWL-RE 156 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~--~~~~G~I~i~g~~i~~~~~~~~-r~ 156 (325)
|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|+++...+.... +.
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 478999999974 35999999999999999999999999999999999995 7999999999999876665443 44
Q ss_pred ceEEEccCCcCcc-ccHHHHHhcCCCCC--------CCHHHHHHHHHHcCHHHHHHhCCCCc-ccccCCC-CCChHHHHH
Q 020527 157 KIGFVGQEPQLLQ-MDIKSNIMYGCPKD--------VKNEDIEWAAKQAYVHEFILSLPCGY-ETLVDDD-LLSGGQKQR 225 (325)
Q Consensus 157 ~i~~v~Q~~~l~~-~tv~enl~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~LSgGq~QR 225 (325)
.++|+||++.+++ .|++||+.+..... ...... . ..+.+.++.+.... ....... .||||||||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qr 152 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDF---L--KLLKAKLALLGMDEEFLNRSVNEGFSGGEKKR 152 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHH---H--HHHHHHHHHcCCchhhcccccccCcCHHHHHH
Confidence 5999999998884 69999987531100 000000 0 11223333332210 0111223 499999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh--cCEEEEEeCCEEEEEcCh
Q 020527 226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIVVIDDGRIIEVGNH 303 (325)
Q Consensus 226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~--~d~v~~l~~G~i~~~g~~ 303 (325)
++|||||+.+|++|||||||++||+.+++.+.+.|+++++ +|+|||++|||++.+.. ||++++|++|++++.|++
T Consensus 153 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~ 229 (243)
T TIGR01978 153 NEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE---PDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDV 229 (243)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH---CCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCH
Confidence 9999999999999999999999999999999999999864 37899999999999864 799999999999999998
Q ss_pred HHHh
Q 020527 304 AELL 307 (325)
Q Consensus 304 ~~l~ 307 (325)
+++.
T Consensus 230 ~~~~ 233 (243)
T TIGR01978 230 ELAK 233 (243)
T ss_pred HHhc
Confidence 7553
No 206
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-49 Score=358.50 Aligned_cols=219 Identities=31% Similarity=0.503 Sum_probs=176.2
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcC---CCC--CCCeEEECCEeCCCCC--H
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL---YEP--SDGQIYIDGFPLTDLD--I 151 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl---~~~--~~G~I~i~g~~i~~~~--~ 151 (325)
.|+++|+++.|+. +.+|+|+||+|++||+++|+||||||||||+++|+|+ ++| ++|+|.++|+++...+ .
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 4899999999975 3599999999999999999999999999999999997 455 5899999999986432 3
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCC-CC-CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527 152 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 225 (325)
Q Consensus 152 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~-~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR 225 (325)
..+++.++|+||++.+|+.|++||+.++... .. .. +.+.++++.+++.+.+.. .......+||||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~~~~LS~G~~qr 154 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKD-----KLKESAFALSGGQQQR 154 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhh-----hhhCCcccCCHHHHHH
Confidence 4567789999999988878999999864211 11 11 112233333333211100 0111235799999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChH
Q 020527 226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA 304 (325)
Q Consensus 226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~ 304 (325)
++|||||+.+|++|||||||++||+.++..+.+.|+++. +++|||++|||++.+. .|||+++|++|++++.|+++
T Consensus 155 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~ 230 (250)
T PRK14245 155 LCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK----KDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTK 230 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh----cCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999984 2579999999999885 59999999999999999999
Q ss_pred HHhhc
Q 020527 305 ELLHK 309 (325)
Q Consensus 305 ~l~~~ 309 (325)
+++++
T Consensus 231 ~~~~~ 235 (250)
T PRK14245 231 KIFTN 235 (250)
T ss_pred HHhcC
Confidence 99764
No 207
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-49 Score=357.00 Aligned_cols=220 Identities=29% Similarity=0.485 Sum_probs=178.2
Q ss_pred ccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC-----CCCeEEECCEeCC-CCCH
Q 020527 78 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLT-DLDI 151 (325)
Q Consensus 78 ~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~-----~~G~I~i~g~~i~-~~~~ 151 (325)
..++++|+++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++. ..+.
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~ 78 (249)
T PRK14253 2 NKFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78 (249)
T ss_pred CeEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccch
Confidence 46899999999974 3599999999999999999999999999999999999986 5999999999875 3344
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCC-CC-CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527 152 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 225 (325)
Q Consensus 152 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~-~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR 225 (325)
..+++.++|+||++.+|+.|+.||+.++... .. .. +.+.++++..++.+.+.. .......+||||||||
T Consensus 79 ~~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~LS~G~~qr 153 (249)
T PRK14253 79 ADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKD-----RLKSHAFGLSGGQQQR 153 (249)
T ss_pred HHHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhH-----HhhcCcccCCHHHHHH
Confidence 5667889999999998889999999875211 11 11 112223333333211100 0011235799999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChH
Q 020527 226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 304 (325)
Q Consensus 226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~ 304 (325)
|+|||||+.+|+++||||||++||+.++..+.+.|+++.+ +.|||++||+++.+.. |||+++|++|++++.|+++
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~----~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~ 229 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK----NYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQ 229 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc----CCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999853 4799999999999865 9999999999999999998
Q ss_pred HHhhc
Q 020527 305 ELLHK 309 (325)
Q Consensus 305 ~l~~~ 309 (325)
++...
T Consensus 230 ~~~~~ 234 (249)
T PRK14253 230 VIFSN 234 (249)
T ss_pred HHHcC
Confidence 88653
No 208
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-49 Score=358.42 Aligned_cols=219 Identities=31% Similarity=0.482 Sum_probs=176.3
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC-----CCCCeEEECCEeCCC--CCH
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LDI 151 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~-----~~~G~I~i~g~~i~~--~~~ 151 (325)
.|+++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4899999999974 369999999999999999999999999999999999997 479999999998753 223
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCC-CC-CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527 152 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 225 (325)
Q Consensus 152 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~-~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR 225 (325)
..+++.++|++|++.+|+.|++||+.++... .. .. ..+..+++..+++.... ........+||||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~~~LS~Gq~qr 155 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETK-----DNLDRNAQAFSGGQQQR 155 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchH-----HHhccChhhCCHHHHHH
Confidence 4567789999999998888999999865211 11 11 11222333333310000 00111235799999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChH
Q 020527 226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 304 (325)
Q Consensus 226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~ 304 (325)
++|||||+.+|+++||||||++||+.++..+.+.|+++.+ +.|||++||+++.+.. ||++++|++|++++.|+++
T Consensus 156 ~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~----~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 231 (251)
T PRK14251 156 ICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH----QYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTE 231 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc----CCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999852 5799999999999865 9999999999999999999
Q ss_pred HHhhc
Q 020527 305 ELLHK 309 (325)
Q Consensus 305 ~l~~~ 309 (325)
+++..
T Consensus 232 ~~~~~ 236 (251)
T PRK14251 232 EMFIA 236 (251)
T ss_pred HHHhC
Confidence 98754
No 209
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=4.6e-49 Score=339.58 Aligned_cols=173 Identities=43% Similarity=0.731 Sum_probs=159.7
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 159 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~ 159 (325)
|+++|++++|++. ..++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 4789999999753 236999999999999999999999999999999999999999999999999988777667788999
Q ss_pred EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEE
Q 020527 160 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 239 (325)
Q Consensus 160 ~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ll 239 (325)
|++|++.+|+.|++||+ ||||||||++|||||+.+|+++
T Consensus 80 ~~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~l 118 (173)
T cd03246 80 YLPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRIL 118 (173)
T ss_pred EECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 99999988888999987 7999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEE
Q 020527 240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRI 297 (325)
Q Consensus 240 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i 297 (325)
||||||++||+.++..+.+.++++++ +|+|+|++|||++.+..||++++|++|++
T Consensus 119 llDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 119 VLDEPNSHLDVEGERALNQAIAALKA---AGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEECCccccCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 99999999999999999999999864 37899999999998877999999999974
No 210
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.8e-49 Score=357.00 Aligned_cols=219 Identities=33% Similarity=0.487 Sum_probs=176.2
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCC--CC---CCCeEEECCEeCCCC--CH
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY--EP---SDGQIYIDGFPLTDL--DI 151 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~--~~---~~G~I~i~g~~i~~~--~~ 151 (325)
.|+++|++++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+. +| ++|+|.++|+++... ..
T Consensus 5 ~l~~~~l~~~~~~~---~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNKK---KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECCe---eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 48999999999743 5999999999999999999999999999999999995 36 599999999988532 23
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCC-CCC-CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527 152 RWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDV-KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 225 (325)
Q Consensus 152 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~-~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR 225 (325)
..+++.++|+||++.+|+.|++||+.++.. ... .. +.+..+++..++.+.+.. .......+||||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~~~~LS~G~~qr 156 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKD-----RLHDSALGLSGGQQQR 156 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHH-----HHhcCcccCCHHHHHH
Confidence 456778999999999888999999986421 011 11 122233334333211110 0111235799999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChH
Q 020527 226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA 304 (325)
Q Consensus 226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~ 304 (325)
++|||||+.+|++|||||||++||+.++..+.+.|+++.+ ++|||++|||++.+. .|||+++|++|++++.|+++
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~----~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 232 (252)
T PRK14239 157 VCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD----DYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTK 232 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh----CCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999853 479999999999875 59999999999999999999
Q ss_pred HHhhc
Q 020527 305 ELLHK 309 (325)
Q Consensus 305 ~l~~~ 309 (325)
++++.
T Consensus 233 ~~~~~ 237 (252)
T PRK14239 233 QMFMN 237 (252)
T ss_pred HHHhC
Confidence 98764
No 211
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-48 Score=355.80 Aligned_cols=219 Identities=31% Similarity=0.509 Sum_probs=178.1
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC-----CCCeEEECCEeCCCC--CH
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDL--DI 151 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~-----~~G~I~i~g~~i~~~--~~ 151 (325)
.|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 5899999999974 3599999999999999999999999999999999999875 799999999998543 23
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCC-CC-CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527 152 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 225 (325)
Q Consensus 152 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~-~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR 225 (325)
...++.++|+||++.+|+.|++||+.++... .. .. +.+.++++.+++.+.+.. ........||||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~~~~LS~G~~qr 155 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD-----DLKKSALKLSGGQQQR 155 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhh-----HhhCCcccCCHHHHHH
Confidence 4557789999999998889999999875211 11 11 122334444433211110 0111235799999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChH
Q 020527 226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 304 (325)
Q Consensus 226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~ 304 (325)
++||||++.+|+++||||||++||+.++..+.+.|+++.+ +.|+|++||+++.+.. |||+++|++|++++.|+++
T Consensus 156 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~----~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 231 (251)
T PRK14270 156 LCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK----EYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTE 231 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh----CCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHH
Confidence 9999999999999999999999999999999999999863 4799999999998865 9999999999999999999
Q ss_pred HHhhc
Q 020527 305 ELLHK 309 (325)
Q Consensus 305 ~l~~~ 309 (325)
++++.
T Consensus 232 ~~~~~ 236 (251)
T PRK14270 232 KIFLE 236 (251)
T ss_pred HHhcC
Confidence 98764
No 212
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=9.6e-49 Score=358.16 Aligned_cols=221 Identities=27% Similarity=0.391 Sum_probs=177.7
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEe-----CCCCCHHH
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP-----LTDLDIRW 153 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~-----i~~~~~~~ 153 (325)
.|+++|++++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|++ +...+...
T Consensus 6 ~l~~~~l~~~~~~~---~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGPR---KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCCc---eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 48999999999753 59999999999999999999999999999999999999999999999998 76554433
Q ss_pred ----HhcceEEEccCCc--Cc-cccHHHHHhcCCC--CCCCHHHHHHHHHHcCHHHHHHhCCCCc-ccccCCCCCChHHH
Q 020527 154 ----LREKIGFVGQEPQ--LL-QMDIKSNIMYGCP--KDVKNEDIEWAAKQAYVHEFILSLPCGY-ETLVDDDLLSGGQK 223 (325)
Q Consensus 154 ----~r~~i~~v~Q~~~--l~-~~tv~enl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~LSgGq~ 223 (325)
.++.++|+||++. ++ ..|+.+|+.+... ......... ..+.++++.++... .......+||||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~ 157 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIR-----ATAGDWLERVEIDAARIDDLPTTFSGGMQ 157 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHH-----HHHHHHHHHcCCChhHHhCCCccCCHHHH
Confidence 3567999999984 33 4688999864311 001111111 11234445444321 11223468999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcC
Q 020527 224 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGN 302 (325)
Q Consensus 224 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~ 302 (325)
||++|||||+.+|++|||||||++||+.++..+.+.++++.++ .|.|||++|||++.+. .||++++|++|++++.|+
T Consensus 158 qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~ 235 (258)
T PRK11701 158 QRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRE--LGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGL 235 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999998652 4789999999999997 499999999999999999
Q ss_pred hHHHhhc
Q 020527 303 HAELLHK 309 (325)
Q Consensus 303 ~~~l~~~ 309 (325)
++++.++
T Consensus 236 ~~~~~~~ 242 (258)
T PRK11701 236 TDQVLDD 242 (258)
T ss_pred HHHHhcC
Confidence 9998754
No 213
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1e-49 Score=332.16 Aligned_cols=211 Identities=30% Similarity=0.439 Sum_probs=179.0
Q ss_pred cEEEEEEEEECCCCC-CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHH---HH
Q 020527 79 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WL 154 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~-~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~---~~ 154 (325)
.|+++++++..+... ...+|++|+|.|++||.++||||||||||||+-+++||..|++|+|.+.|+++..++.. .+
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 488999999886532 35799999999999999999999999999999999999999999999999999887743 33
Q ss_pred h-cceEEEccCCcCc-cccHHHHHhcCCCCC-----CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 020527 155 R-EKIGFVGQEPQLL-QMDIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 227 (325)
Q Consensus 155 r-~~i~~v~Q~~~l~-~~tv~enl~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~ 227 (325)
| +++|+|||.++|. ++|..||++.+.... .........++++++.+.+..+| .+|||||+|||+
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP---------~qLSGGEQQRVA 156 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYP---------AQLSGGEQQRVA 156 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCc---------cccCchHHHHHH
Confidence 3 6799999999987 699999998753211 11122334455555544444444 789999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEE
Q 020527 228 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEV 300 (325)
Q Consensus 228 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~ 300 (325)
||||++..|+||+.||||.+||..+-+++.+++..+.++ .|.|.|+||||...+.+|+|++.|.+|+++++
T Consensus 157 iARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre--~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 157 LARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRE--RGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred HHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhh--cCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 999999999999999999999999999999999999875 69999999999999999999999999999753
No 214
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-48 Score=357.73 Aligned_cols=219 Identities=29% Similarity=0.464 Sum_probs=176.5
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC-----CCCCeEEECCEeCCC--CCH
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LDI 151 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~-----~~~G~I~i~g~~i~~--~~~ 151 (325)
.|+++|++++|+++ ++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. ...
T Consensus 24 ~l~~~~l~~~~~~~---~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYGED---HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEECCc---ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 59999999999743 59999999999999999999999999999999999997 699999999998853 234
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCC-CCCHH-H----HHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527 152 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DVKNE-D----IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 225 (325)
Q Consensus 152 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~-~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR 225 (325)
..+++.++|+||++.+|..|++||+.++... ....+ . +.++++..++.+.+.. .......+||||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~-----~~~~~~~~LSgGe~qr 175 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKD-----RLHDNAYGLSGGQQQR 175 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHH-----HHhcCcccCCHHHHHH
Confidence 4567889999999998878999999864211 11111 1 1222222211110100 0011235799999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChH
Q 020527 226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 304 (325)
Q Consensus 226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~ 304 (325)
++|||||+.+|++|||||||++||+.++..+.+.|+++.+ ++|+|++|||++.+.. ||++++|++|++++.|+++
T Consensus 176 v~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~----~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~ 251 (271)
T PRK14238 176 LCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK----DYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTD 251 (271)
T ss_pred HHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc----CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999853 5799999999999865 9999999999999999999
Q ss_pred HHhhc
Q 020527 305 ELLHK 309 (325)
Q Consensus 305 ~l~~~ 309 (325)
++.++
T Consensus 252 ~~~~~ 256 (271)
T PRK14238 252 KIFSN 256 (271)
T ss_pred HHHcC
Confidence 98764
No 215
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=6.3e-49 Score=351.78 Aligned_cols=207 Identities=27% Similarity=0.407 Sum_probs=175.8
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 159 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~ 159 (325)
|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... . ++.++
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~---~-~~~~~ 73 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK---D-LHKIG 73 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccc---c-cccEE
Confidence 478999999974 3599999999999999999999999999999999999999999999999887532 1 25799
Q ss_pred EEccCCcCcc-ccHHHHHhcCCC-CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC
Q 020527 160 FVGQEPQLLQ-MDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 237 (325)
Q Consensus 160 ~v~Q~~~l~~-~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ 237 (325)
|+||++.++. .|++||+.++.. .......+.++++..++.+..++.+ .+|||||+||++||||++.+|+
T Consensus 74 ~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~~rv~laral~~~p~ 144 (223)
T TIGR03740 74 SLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKA---------KQFSLGMKQRLGIAIALLNHPK 144 (223)
T ss_pred EEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhH---------hhCCHHHHHHHHHHHHHhcCCC
Confidence 9999998874 799999975321 1122345556666666665544433 5799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHH
Q 020527 238 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAE 305 (325)
Q Consensus 238 llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~ 305 (325)
++||||||++||+.+++.+.+.|.++++ +|.|+|++|||++.+. .|||+++|++|++++.|++.+
T Consensus 145 llllDEP~~~LD~~~~~~l~~~L~~~~~---~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 145 LLILDEPTNGLDPIGIQELRELIRSFPE---QGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred EEEECCCccCCCHHHHHHHHHHHHHHHH---CCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999999999999999999864 3789999999999985 599999999999999998765
No 216
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-48 Score=354.29 Aligned_cols=219 Identities=29% Similarity=0.466 Sum_probs=177.6
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC--C---CCCeEEECCEeCCCC--CH
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--P---SDGQIYIDGFPLTDL--DI 151 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~--~---~~G~I~i~g~~i~~~--~~ 151 (325)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.++... ..
T Consensus 4 ~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 80 (252)
T PRK14256 4 KVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP 80 (252)
T ss_pred EEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCCh
Confidence 5899999999974 359999999999999999999999999999999999986 4 699999999998543 23
Q ss_pred HHHhcceEEEccCCcCcc-ccHHHHHhcCCCC-C-CCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHH
Q 020527 152 RWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPK-D-VKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 224 (325)
Q Consensus 152 ~~~r~~i~~v~Q~~~l~~-~tv~enl~~~~~~-~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~Q 224 (325)
..+++.++|+||++.+|+ .|++||+.++... . ... +.+.++++..++.+.+... ......+|||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~~~~LS~G~~q 155 (252)
T PRK14256 81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDR-----LKSNAMELSGGQQQ 155 (252)
T ss_pred HHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHH-----hhCCcCcCCHHHHH
Confidence 456788999999999885 7999999764211 1 111 1223334444432211100 01123679999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcCh
Q 020527 225 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNH 303 (325)
Q Consensus 225 Rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~ 303 (325)
|++|||||+.+|++|||||||++||+.++..+.+.|+++.+ ++|||++||+++.+. .||++++|++|++++.|++
T Consensus 156 rl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~----~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 231 (252)
T PRK14256 156 RLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE----KYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGET 231 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh----CCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999953 469999999999985 5999999999999999999
Q ss_pred HHHhhc
Q 020527 304 AELLHK 309 (325)
Q Consensus 304 ~~l~~~ 309 (325)
++++..
T Consensus 232 ~~~~~~ 237 (252)
T PRK14256 232 KKIFTT 237 (252)
T ss_pred HHHHhC
Confidence 998764
No 217
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=6.5e-49 Score=340.08 Aligned_cols=178 Identities=36% Similarity=0.660 Sum_probs=161.0
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 159 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~ 159 (325)
|+++|++++|+++ ..++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+++.++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 4789999999753 13599999999999999999999999999999999999999999999999987654 455678899
Q ss_pred EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEE
Q 020527 160 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 239 (325)
Q Consensus 160 ~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ll 239 (325)
|+||++.+++.|++||+ ...||||||||++||||++.+|++|
T Consensus 79 ~~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~l 120 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIV 120 (178)
T ss_pred EEccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999988888999987 1469999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEc
Q 020527 240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 301 (325)
Q Consensus 240 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g 301 (325)
||||||++||+.+++.+.+.++++. ++.|+|++||+++.+..||++++|++|++++.|
T Consensus 121 llDEP~~~LD~~~~~~l~~~l~~~~----~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 121 LLDEPTVGLDPITERQLLSLIFEVL----KDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHc----CCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999884 268999999999998779999999999998754
No 218
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-48 Score=356.02 Aligned_cols=219 Identities=31% Similarity=0.490 Sum_probs=177.0
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC-----CCCeEEECCEeCCCC--CH
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDL--DI 151 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~-----~~G~I~i~g~~i~~~--~~ 151 (325)
.|+++|+++.|++ .++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... ..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 5899999999974 3699999999999999999999999999999999999984 899999999987642 22
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCC-C-CCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527 152 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-D-VKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 225 (325)
Q Consensus 152 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~-~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR 225 (325)
..+++.++|+||++.+|+.|++||+.++... . ... +.+..+++..++.+.+.. .......+||||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~~~~LS~Gq~qr 154 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKS-----ELNKPGTRLSGGQQQR 154 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHH-----HHhCChhhcCHHHHHH
Confidence 3457789999999998889999999864211 1 111 112233333333211110 0111235799999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChH
Q 020527 226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA 304 (325)
Q Consensus 226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~ 304 (325)
++|||||+.+|++|||||||++||+.++..+.+.|.++.+ ++|+|++||+++.+. .||++++|++|+++..|+++
T Consensus 155 ~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~----~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (250)
T PRK14262 155 LCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE----NYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTR 230 (250)
T ss_pred HHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc----CcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHH
Confidence 9999999999999999999999999999999999999853 579999999999875 59999999999999999999
Q ss_pred HHhhc
Q 020527 305 ELLHK 309 (325)
Q Consensus 305 ~l~~~ 309 (325)
++...
T Consensus 231 ~~~~~ 235 (250)
T PRK14262 231 EIVER 235 (250)
T ss_pred HHHhC
Confidence 98754
No 219
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.6e-49 Score=358.17 Aligned_cols=219 Identities=30% Similarity=0.481 Sum_probs=176.3
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC-----CCCeEEECCEeCCC--CCH
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD--LDI 151 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~-----~~G~I~i~g~~i~~--~~~ 151 (325)
.++++|++++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. ...
T Consensus 4 ~l~i~~v~~~~~~~---~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGSF---HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECCE---eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 48999999999753 599999999999999999999999999999999999974 69999999998753 234
Q ss_pred HHHhcceEEEccCCcCcc-ccHHHHHhcCCCC-CC-CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHH
Q 020527 152 RWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPK-DV-KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 224 (325)
Q Consensus 152 ~~~r~~i~~v~Q~~~l~~-~tv~enl~~~~~~-~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~Q 224 (325)
..+++.++|+||++.+|+ .|++||+.++... .. .. +.+.++++..++.+.+.. .......+|||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~~~~LS~G~~q 155 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKD-----RLDKPGGGLSGGQQQ 155 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhh-----HhhCCcccCCHHHHH
Confidence 456788999999998885 7999999764211 11 11 122233333433211100 011123679999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEe------CCEE
Q 020527 225 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVID------DGRI 297 (325)
Q Consensus 225 Rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~------~G~i 297 (325)
||+|||||+.+|++|||||||++||+.++..+.+.|+++++ ++|||++||+++.+. .||++++|+ +|++
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~----~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i 231 (258)
T PRK14241 156 RLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ----DYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRL 231 (258)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc----CCEEEEEecCHHHHHHhCCEEEEEecccCCCCceE
Confidence 99999999999999999999999999999999999999852 479999999999885 599999997 7999
Q ss_pred EEEcChHHHhhc
Q 020527 298 IEVGNHAELLHK 309 (325)
Q Consensus 298 ~~~g~~~~l~~~ 309 (325)
++.|++++++..
T Consensus 232 ~~~~~~~~~~~~ 243 (258)
T PRK14241 232 VEIDDTEKIFSN 243 (258)
T ss_pred EecCCHHHHHhC
Confidence 999999998764
No 220
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-48 Score=357.71 Aligned_cols=219 Identities=29% Similarity=0.437 Sum_probs=178.4
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC-----CCCCeEEECCEeCCCC--CH
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTDL--DI 151 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~-----~~~G~I~i~g~~i~~~--~~ 151 (325)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++... +.
T Consensus 20 ~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 20 ALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred EEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 5999999999964 369999999999999999999999999999999999996 5899999999998532 34
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCC-C-CCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527 152 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-D-VKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 225 (325)
Q Consensus 152 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~-~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR 225 (325)
..+++.|+|+||++.+|+.|++||+.++... . ... +.+.++++..++.+.+.. .......+||||||||
T Consensus 97 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-----~~~~~~~~LS~G~~qr 171 (267)
T PRK14237 97 YEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKD-----DLHKSALTLSGGQQQR 171 (267)
T ss_pred HHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhh-----hhcCCcccCCHHHHHH
Confidence 4567889999999988888999999875211 1 111 122233344433211110 0112236799999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChH
Q 020527 226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA 304 (325)
Q Consensus 226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~ 304 (325)
++|||||+.+|++|||||||++||+.++..+.++|.++.+ +.|||++||+++.+. .||++++|++|++++.|+++
T Consensus 172 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~----~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 247 (267)
T PRK14237 172 LCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK----NYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTR 247 (267)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc----CCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999842 579999999999885 59999999999999999999
Q ss_pred HHhhc
Q 020527 305 ELLHK 309 (325)
Q Consensus 305 ~l~~~ 309 (325)
++...
T Consensus 248 ~~~~~ 252 (267)
T PRK14237 248 NIFTN 252 (267)
T ss_pred HHhcC
Confidence 98764
No 221
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-48 Score=354.85 Aligned_cols=219 Identities=26% Similarity=0.455 Sum_probs=178.3
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCC-----CCeEEECCEeCCCC--CH
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-----DGQIYIDGFPLTDL--DI 151 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~-----~G~I~i~g~~i~~~--~~ 151 (325)
.|+++|++++|++ +.+|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 4899999999974 35999999999999999999999999999999999999997 69999999988542 33
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCC-CC-CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527 152 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 225 (325)
Q Consensus 152 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~-~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR 225 (325)
..+++.++|+||++.+|+.|++||+.++... .. .. +.+..+++..++.+.+... ......+||||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-----~~~~~~~LS~Gq~qr 155 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDN-----LHKSGLALSGGQQQR 155 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhH-----hhCCcccCCHHHHHH
Confidence 4567889999999998888999999875211 11 11 1122233333332211110 111236799999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChH
Q 020527 226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 304 (325)
Q Consensus 226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~ 304 (325)
++|||||+.+|+++||||||++||+.++..+.++|+++. +++|||++||+++.+.. ||++++|++|++++.|+++
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~ 231 (251)
T PRK14249 156 LCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK----QNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTG 231 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh----cCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHH
Confidence 999999999999999999999999999999999999884 26799999999999865 8999999999999999999
Q ss_pred HHhhc
Q 020527 305 ELLHK 309 (325)
Q Consensus 305 ~l~~~ 309 (325)
++...
T Consensus 232 ~~~~~ 236 (251)
T PRK14249 232 EIFSR 236 (251)
T ss_pred HHHhC
Confidence 98754
No 222
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1.7e-48 Score=358.60 Aligned_cols=233 Identities=28% Similarity=0.415 Sum_probs=182.5
Q ss_pred ccEEEEEEEEECCCC------CCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCH
Q 020527 78 GHVQFVNISFHYPSR------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI 151 (325)
Q Consensus 78 ~~i~~~~v~~~y~~~------~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~ 151 (325)
..|+++||+++|+.. .++.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.
T Consensus 2 ~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~ 81 (268)
T PRK10419 2 TLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81 (268)
T ss_pred ceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccCh
Confidence 358999999999730 02469999999999999999999999999999999999999999999999998876543
Q ss_pred ---HHHhcceEEEccCCc--Cc-cccHHHHHhcCCC--CCCCHHHHHHHHHHcCHHHHHHhCCCC-cccccCCCCCChHH
Q 020527 152 ---RWLREKIGFVGQEPQ--LL-QMDIKSNIMYGCP--KDVKNEDIEWAAKQAYVHEFILSLPCG-YETLVDDDLLSGGQ 222 (325)
Q Consensus 152 ---~~~r~~i~~v~Q~~~--l~-~~tv~enl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~LSgGq 222 (325)
..+++.++|+||++. ++ ..|+.+|+.+... ...... .....+.++++.+... .........|||||
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~-----~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge 156 (268)
T PRK10419 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKA-----ERLARASEMLRAVDLDDSVLDKRPPQLSGGQ 156 (268)
T ss_pred hHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHH-----HHHHHHHHHHHHcCCChhHhhCCCccCChHH
Confidence 245778999999984 44 4799999864311 011111 1111223344443221 11122336799999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEc
Q 020527 223 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 301 (325)
Q Consensus 223 ~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g 301 (325)
|||++|||||+.+|++|||||||++||+.++..+.+.|+++.++ .+.|+|++||+++.+.. ||++++|++|++++.|
T Consensus 157 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~--~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g 234 (268)
T PRK10419 157 LQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQ--FGTACLFITHDLRLVERFCQRVMVMDNGQIVETQ 234 (268)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHH--cCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeC
Confidence 99999999999999999999999999999999999999998653 37899999999999875 9999999999999999
Q ss_pred ChHHHhhcCHHHHHHH
Q 020527 302 NHAELLHKGRLYAKLV 317 (325)
Q Consensus 302 ~~~~l~~~~~~~~~~~ 317 (325)
+++++.+....|...+
T Consensus 235 ~~~~~~~~~~~~~~~~ 250 (268)
T PRK10419 235 PVGDKLTFSSPAGRVL 250 (268)
T ss_pred ChhhccCCCCHHHHHH
Confidence 9999876544444433
No 223
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.8e-48 Score=350.45 Aligned_cols=213 Identities=31% Similarity=0.531 Sum_probs=180.5
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 159 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~ 159 (325)
|+++|++++|++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+. .++.++
T Consensus 1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~ 74 (235)
T cd03299 1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDIS 74 (235)
T ss_pred CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEE
Confidence 468999999964 38999999999999999999999999999999999999999999999999876443 357899
Q ss_pred EEccCCcCc-cccHHHHHhcCCCCC-CC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 020527 160 FVGQEPQLL-QMDIKSNIMYGCPKD-VK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 233 (325)
Q Consensus 160 ~v~Q~~~l~-~~tv~enl~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 233 (325)
|+||++.+| ..|+.||+.++.... .. .+.+.++++.+++.+++++.+ .+|||||+||++||||++
T Consensus 75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~laral~ 145 (235)
T cd03299 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP---------ETLSGGEQQRVAIARALV 145 (235)
T ss_pred EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCc---------ccCCHHHHHHHHHHHHHH
Confidence 999999888 589999998642111 11 122344555566655555444 579999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhc
Q 020527 234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 309 (325)
Q Consensus 234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 309 (325)
.+|++++|||||++||+.+++.+.+.++++.++ .|+|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 146 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~--~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 146 VNPKILLLDEPFSALDVRTKEKLREELKKIRKE--FGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 999999999999999999999999999998642 37899999999999864 999999999999999999888764
No 224
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.6e-49 Score=353.44 Aligned_cols=214 Identities=30% Similarity=0.489 Sum_probs=179.7
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 159 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~ 159 (325)
|+++|++++|+++ .+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. .++.++
T Consensus 1 l~~~~l~~~~~~~---~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGGF---VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVN 75 (232)
T ss_pred CEEEeEEEEeCCe---eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceE
Confidence 4689999999753 59999999999999999999999999999999999999999999999998875443 257899
Q ss_pred EEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 020527 160 FVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 233 (325)
Q Consensus 160 ~v~Q~~~l~~-~tv~enl~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 233 (325)
|+||++.+|. .|+.||+.++.. .... .+.+..+++..++.+++++.+ ..||+|||||++|||||+
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~lS~G~~qrl~laral~ 146 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP---------SQLSGGQQQRVAIARALV 146 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHHHHHHh
Confidence 9999999884 699999976421 1111 122334445555554444433 579999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhc
Q 020527 234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 309 (325)
Q Consensus 234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 309 (325)
.+|+++||||||++||+.+++.+.+.|+++.++ .|.|||++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 147 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~--~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 147 NEPKVLLLDEPLGALDLKLRKDMQLELKRLQKE--LGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 999999999999999999999999999998752 37899999999999864 999999999999999998888654
No 225
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-48 Score=357.11 Aligned_cols=219 Identities=30% Similarity=0.456 Sum_probs=178.3
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC-----CCCCeEEECCEeCCC--CCH
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LDI 151 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~-----~~~G~I~i~g~~i~~--~~~ 151 (325)
.|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 10 ~l~i~~v~~~~~~~---~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGSF---LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECCE---EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 48999999999743 59999999999999999999999999999999999986 489999999998742 234
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCCC-CC---HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 020527 152 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD-VK---NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 227 (325)
Q Consensus 152 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~ 227 (325)
..++++++|+||++.+|+.|++||+.++.... .. .+.+..+++..++.+.+... ......+||||||||++
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-----~~~~~~~LSgGq~qrv~ 161 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDK-----LKQSGLSLSGGQQQRLC 161 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHH-----hcCCcccCCHHHHHHHH
Confidence 55678899999999888779999998753211 11 12223334444443222111 11123579999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEe---------CCEE
Q 020527 228 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID---------DGRI 297 (325)
Q Consensus 228 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~---------~G~i 297 (325)
|||||+.+|++|||||||++||+.++..+.+.|.++.+ +.|||++||+++.+.. |||+++|+ +|++
T Consensus 162 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~----~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i 237 (264)
T PRK14243 162 IARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE----QYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYL 237 (264)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc----CCEEEEEecCHHHHHHhCCEEEEEecccccccccCceE
Confidence 99999999999999999999999999999999999853 4699999999998865 99999998 8999
Q ss_pred EEEcChHHHhhc
Q 020527 298 IEVGNHAELLHK 309 (325)
Q Consensus 298 ~~~g~~~~l~~~ 309 (325)
++.|+++++++.
T Consensus 238 ~~~~~~~~~~~~ 249 (264)
T PRK14243 238 VEFDRTEKIFNS 249 (264)
T ss_pred EEeCCHHHHHhC
Confidence 999999999764
No 226
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.1e-47 Score=420.41 Aligned_cols=289 Identities=25% Similarity=0.401 Sum_probs=240.3
Q ss_pred eehHHHHhcCCcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEEE
Q 020527 4 LLGGMSIMIGQVSPEQLTKYVLYCEWLIYATW-RMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQF 82 (325)
Q Consensus 4 ~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 82 (325)
.+++|.+..+ ++++.+++++.++..+..|+. .+...+..+.++.++++|+.+++..++...... . .....+++
T Consensus 322 ~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~---~--~~~~~i~~ 395 (1490)
T TIGR01271 322 SVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEY---N--LTTTEVEM 395 (1490)
T ss_pred HHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc---c--CCCCceEE
Confidence 3456666544 688888888888888877774 688899999999999999999997654321110 0 01124788
Q ss_pred EEEEEECCCC-------------------------------CCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcC
Q 020527 83 VNISFHYPSR-------------------------------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 83 ~~v~~~y~~~-------------------------------~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl 131 (325)
+|++|.|+.. ..+++|+|+||+|++||+++|+||||||||||+++|+|+
T Consensus 396 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~ 475 (1490)
T TIGR01271 396 VNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGE 475 (1490)
T ss_pred ecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 8888888421 013589999999999999999999999999999999999
Q ss_pred CCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccc
Q 020527 132 YEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET 211 (325)
Q Consensus 132 ~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (325)
++|++|+|.++| +|+|++|+|.+|++||+|||.|+.. ...+...++.+.+++.+.++.++.++.+
T Consensus 476 ~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~--~~~~~~~~~~~~~~L~~~l~~l~~g~~t 540 (1490)
T TIGR01271 476 LEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLS--YDEYRYTSVIKACQLEEDIALFPEKDKT 540 (1490)
T ss_pred CCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhccc--cchHHHHHHHHHHhHHHHHHhccccccc
Confidence 999999999988 4999999999999999999999843 2334455677778888999999999888
Q ss_pred ccC--CCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHH-HHHhhccCCCCeEEEEEecCchHHHhcCE
Q 020527 212 LVD--DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV-LHALRNDCKTKRTVIVIAHRLSTIKAVDR 288 (325)
Q Consensus 212 ~~~--~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~-l~~l~~~~~~g~tvi~vtH~~~~~~~~d~ 288 (325)
.++ +.+|||||||||+||||++.+|+++|||||||+||+.+++.+.+. +..+. +++|+|++||+++.+..||+
T Consensus 541 ~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~----~~~tvilvtH~~~~~~~ad~ 616 (1490)
T TIGR01271 541 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM----SNKTRILVTSKLEHLKKADK 616 (1490)
T ss_pred cccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh----cCCeEEEEeCChHHHHhCCE
Confidence 776 368999999999999999999999999999999999999999974 56653 37899999999999988999
Q ss_pred EEEEeCCEEEEEcChHHHhhcCHHHHHHH
Q 020527 289 IVVIDDGRIIEVGNHAELLHKGRLYAKLV 317 (325)
Q Consensus 289 v~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 317 (325)
|++|++|++++.|+++++......|.+.+
T Consensus 617 ii~l~~g~i~~~g~~~~l~~~~~~~~~~~ 645 (1490)
T TIGR01271 617 ILLLHEGVCYFYGTFSELQAKRPDFSSLL 645 (1490)
T ss_pred EEEEECCEEEEEcCHHHHHhcChHHHHHH
Confidence 99999999999999999987655565554
No 227
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-48 Score=357.10 Aligned_cols=221 Identities=32% Similarity=0.487 Sum_probs=178.5
Q ss_pred cccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC-----CCCeEEECCEeCCC--C
Q 020527 77 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD--L 149 (325)
Q Consensus 77 ~~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~-----~~G~I~i~g~~i~~--~ 149 (325)
+..|+++|++++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++.. .
T Consensus 5 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 81 (259)
T PRK14260 5 IPAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRI 81 (259)
T ss_pred cceEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEecccccc
Confidence 346999999999974 3599999999999999999999999999999999999985 48999999998853 2
Q ss_pred CHHHHhcceEEEccCCcCccccHHHHHhcCCCCC--CCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHH
Q 020527 150 DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD--VKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK 223 (325)
Q Consensus 150 ~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~ 223 (325)
....+++.++|+||++.+|+.|++||+.++.... ..+ +.+.++++..++.+.+.. .......+||||||
T Consensus 82 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-----~~~~~~~~LS~G~~ 156 (259)
T PRK14260 82 NINRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKD-----KLNKSALGLSGGQQ 156 (259)
T ss_pred chHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhh-----HhcCCcccCCHHHH
Confidence 3345677899999999988899999997642110 111 122334444444221111 01112357999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEe-----CCEE
Q 020527 224 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID-----DGRI 297 (325)
Q Consensus 224 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~-----~G~i 297 (325)
||++|||||+.+|+++||||||++||+.++..+.+.|+++++ ++|||++||+++.+.. ||++++|+ +|++
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~----~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i 232 (259)
T PRK14260 157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS----ELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQM 232 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc----CCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceE
Confidence 999999999999999999999999999999999999999853 4799999999999865 99999998 5999
Q ss_pred EEEcChHHHhhc
Q 020527 298 IEVGNHAELLHK 309 (325)
Q Consensus 298 ~~~g~~~~l~~~ 309 (325)
++.|+++++++.
T Consensus 233 ~~~~~~~~~~~~ 244 (259)
T PRK14260 233 VEFGVTTQIFSN 244 (259)
T ss_pred EEeCCHHHHhcC
Confidence 999999998754
No 228
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-48 Score=359.21 Aligned_cols=219 Identities=32% Similarity=0.453 Sum_probs=176.4
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC-----CCCCeEEECCEeCCCC--CH
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTDL--DI 151 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~-----~~~G~I~i~g~~i~~~--~~ 151 (325)
.|+++|++++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.++... ..
T Consensus 39 ~l~~~~l~~~~~~~---~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 39 HVVAKNFSIYYGEF---EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred EEEEeeeEEEECCE---EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 59999999999743 59999999999999999999999999999999999864 4999999999987542 22
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCC-CC-CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527 152 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 225 (325)
Q Consensus 152 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~-~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR 225 (325)
..++++++|+||++.+|+.|+.||+.++... .. .. +.+.++++..++.+.+. .........||||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-----~~~~~~~~~LSgGq~qr 190 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS-----DRLDKNALGLSGGQQQR 190 (286)
T ss_pred HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh-----hHhhCChhhCCHHHHHH
Confidence 3467889999999998877999999875211 11 11 12223333333211000 00111235799999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChH
Q 020527 226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 304 (325)
Q Consensus 226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~ 304 (325)
++|||||+.+|++|||||||++||+.++..+.+.|+++.+ ++|||++|||++.+.. |||+++|++|++++.|+++
T Consensus 191 v~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~----~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~ 266 (286)
T PRK14275 191 LCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG----SYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTA 266 (286)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc----CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999853 4799999999999865 9999999999999999999
Q ss_pred HHhhc
Q 020527 305 ELLHK 309 (325)
Q Consensus 305 ~l~~~ 309 (325)
++.+.
T Consensus 267 ~~~~~ 271 (286)
T PRK14275 267 QLFTN 271 (286)
T ss_pred HHHhC
Confidence 98764
No 229
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-48 Score=357.10 Aligned_cols=219 Identities=28% Similarity=0.491 Sum_probs=176.7
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC-----CCCCeEEECCEeCCC--CCH
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LDI 151 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~-----~~~G~I~i~g~~i~~--~~~ 151 (325)
.|+++|++++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 39 ~l~i~~l~~~~~~~---~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 39 VIEARDLNVFYGDE---QALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred eEEEEEEEEEECCE---eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence 59999999999743 59999999999999999999999999999999999997 689999999998753 234
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCC-CCC---HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 020527 152 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DVK---NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 227 (325)
Q Consensus 152 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~ 227 (325)
..++++++|+||++.+|+.|++||+.++... ... .+++.++++..++...+.. .......+||||||||++
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-----~~~~~~~~LSgGe~qrv~ 190 (285)
T PRK14254 116 VALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD-----QLDSSGLDLSGGQQQRLC 190 (285)
T ss_pred HhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHH-----HHhCCcccCCHHHHHHHH
Confidence 4567889999999988877999999764211 111 1223334444443211100 011123579999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEE-EEeCCEEEEEcChHH
Q 020527 228 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIV-VIDDGRIIEVGNHAE 305 (325)
Q Consensus 228 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~-~l~~G~i~~~g~~~~ 305 (325)
|||||+.+|+||||||||++||+.++..+.+.|+++++ +.|||++|||++.+.. |||++ +|++|++++.|++++
T Consensus 191 LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~----~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~ 266 (285)
T PRK14254 191 IARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE----EYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDK 266 (285)
T ss_pred HHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc----CCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHH
Confidence 99999999999999999999999999999999999964 3699999999999865 99975 579999999999998
Q ss_pred Hhhc
Q 020527 306 LLHK 309 (325)
Q Consensus 306 l~~~ 309 (325)
++.+
T Consensus 267 ~~~~ 270 (285)
T PRK14254 267 IFEN 270 (285)
T ss_pred HHhC
Confidence 8754
No 230
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-48 Score=355.60 Aligned_cols=218 Identities=33% Similarity=0.506 Sum_probs=175.4
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC-----CCCCeEEECCEeCCCCC--HH
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTDLD--IR 152 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~-----~~~G~I~i~g~~i~~~~--~~ 152 (325)
-+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...+ ..
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 478999999964 369999999999999999999999999999999999986 47999999999875432 23
Q ss_pred HHhcceEEEccCCcCccccHHHHHhcCCCC-CC--CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527 153 WLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV--KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 225 (325)
Q Consensus 153 ~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~-~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR 225 (325)
.+++.++|+||++.+|+.|++||+.++... .. .. +.+.++++..++.+.+.. .......+||||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~~~~LS~Gq~qr 157 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGD-----RLKDSAFELSGGQQQR 157 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhh-----HhhcChhhCCHHHHHH
Confidence 457789999999998878999999865211 11 11 112233343333221100 0011235799999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChH
Q 020527 226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 304 (325)
Q Consensus 226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~ 304 (325)
++|||||+.+|++|||||||++||+.++..+.+.|+++. +++|||++|||++.+.. ||++++|++|++++.|+++
T Consensus 158 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 233 (251)
T PRK14244 158 LCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK----KNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQ 233 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh----cCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999984 26899999999999865 9999999999999999999
Q ss_pred HHhhc
Q 020527 305 ELLHK 309 (325)
Q Consensus 305 ~l~~~ 309 (325)
+++..
T Consensus 234 ~~~~~ 238 (251)
T PRK14244 234 EIFKN 238 (251)
T ss_pred HHhcC
Confidence 98764
No 231
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-48 Score=353.46 Aligned_cols=219 Identities=28% Similarity=0.436 Sum_probs=176.9
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC-----CCCeEEECCEeCCCC--CH
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDL--DI 151 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~-----~~G~I~i~g~~i~~~--~~ 151 (325)
.|+++|++++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... +.
T Consensus 6 ~i~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGEK---HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECCe---eeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 58999999999743 599999999999999999999999999999999999763 489999999998654 33
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCC-CC-CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527 152 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 225 (325)
Q Consensus 152 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~-~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR 225 (325)
...++.++|+||++.+|+.||+||+.++... .. .. +.+.++++..++.+.+.. ........||||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-----~~~~~~~~LS~G~~qr 157 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKD-----RLHDSALSLSGGQQQR 157 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHH-----HhhcChhhCCHHHHHH
Confidence 4567789999999998878999999875321 10 11 112223333332211110 0111235799999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChH
Q 020527 226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA 304 (325)
Q Consensus 226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~ 304 (325)
++|||||+.+|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++++.|+++
T Consensus 158 v~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~----~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~ 233 (253)
T PRK14261 158 LCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK----EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTT 233 (253)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh----CceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHH
Confidence 9999999999999999999999999999999999999853 479999999999986 59999999999999999999
Q ss_pred HHhhc
Q 020527 305 ELLHK 309 (325)
Q Consensus 305 ~l~~~ 309 (325)
++...
T Consensus 234 ~~~~~ 238 (253)
T PRK14261 234 QIFEN 238 (253)
T ss_pred HHHhC
Confidence 98754
No 232
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=2.8e-48 Score=346.99 Aligned_cols=207 Identities=30% Similarity=0.470 Sum_probs=171.8
Q ss_pred EEEEEEEEECCCCC-CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHH---HHh
Q 020527 80 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLR 155 (325)
Q Consensus 80 i~~~~v~~~y~~~~-~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~---~~r 155 (325)
++++|+++.|+.+. .+.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 68999999996421 14699999999999999999999999999999999999999999999999988655432 356
Q ss_pred cceEEEccCCcCcc-ccHHHHHhcCCCC--CCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 020527 156 EKIGFVGQEPQLLQ-MDIKSNIMYGCPK--DVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 228 (325)
Q Consensus 156 ~~i~~v~Q~~~l~~-~tv~enl~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 228 (325)
+.++|+||++.+|. .|+.||+.++... .... +.+.++++..++.+..++.+ .+||+|||||++|
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~lS~G~~qrv~l 152 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP---------HNLSGGQKQRVAI 152 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh---------hhCCHHHHHHHHH
Confidence 78999999999885 7999999764211 1111 12344455555544444433 5799999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEE
Q 020527 229 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRI 297 (325)
Q Consensus 229 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i 297 (325)
||||+.+|+++||||||++||+.++..+.+.|+++.++ .++|+|++||+++....||+|++|++|++
T Consensus 153 aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 153 ARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLARE--QGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999999998753 47899999999997667999999999986
No 233
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-48 Score=356.50 Aligned_cols=219 Identities=31% Similarity=0.509 Sum_probs=178.1
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC-----CCCeEEECCEeCCC--CCH
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD--LDI 151 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~-----~~G~I~i~g~~i~~--~~~ 151 (325)
.|+++|++++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .+.
T Consensus 25 ~l~~~nl~~~~~~~---~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~ 101 (272)
T PRK14236 25 ALEVRNLNLFYGDK---QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDV 101 (272)
T ss_pred EEEEEEEEEEECCe---eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCH
Confidence 59999999999643 599999999999999999999999999999999999874 89999999999864 233
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCC-CCC-CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527 152 RWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDV-KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 225 (325)
Q Consensus 152 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~-~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR 225 (325)
..+++.++|+||++.+|+.|++||+.++.. ... .. +.+.++++..++.+.+.. .......+||||||||
T Consensus 102 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~~~~LS~Gq~qr 176 (272)
T PRK14236 102 AELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKD-----RLHENAFGLSGGQQQR 176 (272)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHH-----HhhCCcccCCHHHHHH
Confidence 456788999999999887799999976421 111 11 123333444443221110 0011235799999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChH
Q 020527 226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA 304 (325)
Q Consensus 226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~ 304 (325)
++|||||+.+|+++||||||++||+.++..+.+.|+++++ +.|+|++||+++.+. .||++++|++|++++.|+++
T Consensus 177 v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~----~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 252 (272)
T PRK14236 177 LVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS----KYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTD 252 (272)
T ss_pred HHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh----CCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHH
Confidence 9999999999999999999999999999999999999853 579999999999986 49999999999999999999
Q ss_pred HHhhc
Q 020527 305 ELLHK 309 (325)
Q Consensus 305 ~l~~~ 309 (325)
++...
T Consensus 253 ~~~~~ 257 (272)
T PRK14236 253 TLFTS 257 (272)
T ss_pred HHhcC
Confidence 98754
No 234
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-48 Score=354.73 Aligned_cols=221 Identities=29% Similarity=0.482 Sum_probs=179.3
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCC-----CCeEEECCEeCCC--CCH
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-----DGQIYIDGFPLTD--LDI 151 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~-----~G~I~i~g~~i~~--~~~ 151 (325)
.|+++|++++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+.
T Consensus 7 ~l~~~nl~~~~~~~---~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 7 AIKVNNLSFYYDTQ---KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred eEEEeeEEEEeCCe---eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 58999999999643 5999999999999999999999999999999999999985 8999999998742 233
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCC-CC-CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527 152 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 225 (325)
Q Consensus 152 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~-~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR 225 (325)
..+++.++|+||++.+|+.|++||+.++... .. .. +.+.++++..++.+.+.. .......+||||||||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~~~~LSgGq~qr 158 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKH-----KIHKSALDLSGGQQQR 158 (261)
T ss_pred HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhh-----HhcCCcccCCHHHHHH
Confidence 4567889999999988889999999764210 00 11 122334444443221111 0111235799999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeC-----CEEEE
Q 020527 226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD-----GRIIE 299 (325)
Q Consensus 226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~-----G~i~~ 299 (325)
++|||||+.+|++|||||||++||+.++..+.+.|++++++ .+.|+|++|||++.+.. ||+|++|++ |++++
T Consensus 159 v~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~--~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 236 (261)
T PRK14258 159 LCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLR--SELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE 236 (261)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEE
Confidence 99999999999999999999999999999999999998642 37899999999999865 999999999 99999
Q ss_pred EcChHHHhhc
Q 020527 300 VGNHAELLHK 309 (325)
Q Consensus 300 ~g~~~~l~~~ 309 (325)
.|+++++++.
T Consensus 237 ~~~~~~~~~~ 246 (261)
T PRK14258 237 FGLTKKIFNS 246 (261)
T ss_pred eCCHHHHHhC
Confidence 9999999765
No 235
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=4.6e-48 Score=341.69 Aligned_cols=199 Identities=35% Similarity=0.512 Sum_probs=170.7
Q ss_pred EEEEEEEEECCCCCC--CCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 020527 80 VQFVNISFHYPSRPT--VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 157 (325)
Q Consensus 80 i~~~~v~~~y~~~~~--~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~ 157 (325)
++++||+++|+++.. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 478999999975310 2699999999999999999999999999999999999999999999998 5
Q ss_pred eEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCC
Q 020527 158 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRD 235 (325)
Q Consensus 158 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~ 235 (325)
|+|+||++.+|+.|++||+.++.. ...+....+.+..++.+.+...+.++.+... ..+||+|||||++|||||+.+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~ 145 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKP--FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSD 145 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCC--cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999988632 2234455666677788888888776655443 467999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHH-HHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCE
Q 020527 236 PAILLLDEATSALDSESEHYVKG-VLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR 296 (325)
Q Consensus 236 p~llllDEPts~LD~~~~~~i~~-~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~ 296 (325)
|+++||||||++||+.+.+.+.+ +++++.+ +|.|||++||+++.+..||++++|++|+
T Consensus 146 p~llllDEP~~~LD~~~~~~l~~~ll~~~~~---~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 146 ADIYLLDDPLSAVDAHVGRHIFENCILGLLL---NNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHhcc---CCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 99999999999999999998888 4565543 3789999999999887799999999984
No 236
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-48 Score=354.90 Aligned_cols=219 Identities=27% Similarity=0.413 Sum_probs=177.2
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC-----CCCeEEECCEeCCCC--CH
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDL--DI 151 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~-----~~G~I~i~g~~i~~~--~~ 151 (325)
.|+++|++++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... ..
T Consensus 20 ~l~~~nl~~~~~~~---~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 20 VFEVEGVKVFYGGF---LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred eEEEeeEEEEeCCe---EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 59999999999753 599999999999999999999999999999999999863 699999999988532 23
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCCC-C---CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 020527 152 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD-V---KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 227 (325)
Q Consensus 152 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~ 227 (325)
..++++|+|+||++.+|+.|++||+.++.... . .++.+...++.+++.+.+.. .......+|||||||||+
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-----~~~~~~~~LSgGq~qrv~ 171 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD-----KLKEKGTALSGGQQQRLC 171 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHH-----HhcCCcccCCHHHHHHHH
Confidence 45678899999999988779999998752111 1 01122333344333221111 011123579999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEe---------CCEE
Q 020527 228 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID---------DGRI 297 (325)
Q Consensus 228 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~---------~G~i 297 (325)
|||||+.+|++|||||||++||+.++..+.+.|.++++ +.|||++|||++.+.. |||+++|+ +|++
T Consensus 172 LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~----~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~ 247 (274)
T PRK14265 172 IARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE----QYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKL 247 (274)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc----CCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceE
Confidence 99999999999999999999999999999999999853 5799999999999865 99999998 8999
Q ss_pred EEEcChHHHhhc
Q 020527 298 IEVGNHAELLHK 309 (325)
Q Consensus 298 ~~~g~~~~l~~~ 309 (325)
++.|++++++.+
T Consensus 248 ~~~g~~~~~~~~ 259 (274)
T PRK14265 248 VEFSPTEQMFGS 259 (274)
T ss_pred EEeCCHHHHHhC
Confidence 999999998764
No 237
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-48 Score=356.49 Aligned_cols=219 Identities=27% Similarity=0.480 Sum_probs=178.3
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC-----CCCeEEECCEeCCCCC-HH
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDLD-IR 152 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~-----~~G~I~i~g~~i~~~~-~~ 152 (325)
.|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+ ..
T Consensus 21 ~l~i~nl~~~~~~~---~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAGK---TVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECCE---EEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 58999999999753 699999999999999999999999999999999999986 7999999999886543 34
Q ss_pred HHhcceEEEccCCcCccccHHHHHhcCCCC--CCCHHHH----HHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHH
Q 020527 153 WLREKIGFVGQEPQLLQMDIKSNIMYGCPK--DVKNEDI----EWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 226 (325)
Q Consensus 153 ~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv 226 (325)
.+++.++|+||++.+|+.|++||+.++... ....... .+.++..++...+.. .......+||||||||+
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~l~~~~~~LSgGq~qrl 172 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKD-----RLSDSPFRLSGGQQQLL 172 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhh-----HhhCCcccCCHHHHHHH
Confidence 567889999999998889999999875211 1122221 122233333211100 00112357999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHH
Q 020527 227 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAE 305 (325)
Q Consensus 227 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~ 305 (325)
+|||||+.+|++|||||||++||+.+++.+.+.|+++.+ +.|||++||+++.+.. |||+++|++|++++.|++++
T Consensus 173 ~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~----~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~ 248 (276)
T PRK14271 173 CLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD----RLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQ 248 (276)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc----CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999853 3699999999998865 99999999999999999999
Q ss_pred Hhhc
Q 020527 306 LLHK 309 (325)
Q Consensus 306 l~~~ 309 (325)
+.+.
T Consensus 249 ~~~~ 252 (276)
T PRK14271 249 LFSS 252 (276)
T ss_pred HHhC
Confidence 8765
No 238
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=5e-48 Score=349.26 Aligned_cols=214 Identities=31% Similarity=0.500 Sum_probs=178.3
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 159 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~ 159 (325)
++++|++++|+++ ++|+|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..++.++
T Consensus 1 i~i~~l~~~~~~~---~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~--~~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGSF---QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVH--ARDRKIG 75 (237)
T ss_pred CEEEEEEEEECCe---eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC--hhhcCEE
Confidence 4789999999753 5999999999999999999999999999999999999999999999999886543 2367899
Q ss_pred EEccCCcCcc-ccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 020527 160 FVGQEPQLLQ-MDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 233 (325)
Q Consensus 160 ~v~Q~~~l~~-~tv~enl~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 233 (325)
|+||++.+|+ .|+.||+.+.... ... .+.+.++++..++.++.++. ..+||+||+||++|||||+
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~lS~G~~qrl~laral~ 146 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRY---------PNQLSGGQRQRVALARALA 146 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC---------hhhCCHHHHHHHHHHHHHh
Confidence 9999999885 6999999865321 111 11223344444444333332 2579999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhc
Q 020527 234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 309 (325)
Q Consensus 234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 309 (325)
.+|+++||||||++||+.+++.+.+.|.+++++ .++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 147 ~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~--~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 147 VEPQVLLLDEPFGALDAKVRKELRSWLRKLHDE--VHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 999999999999999999999999999998642 37899999999998865 999999999999999999988754
No 239
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-48 Score=345.80 Aligned_cols=204 Identities=31% Similarity=0.491 Sum_probs=166.5
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCC----HHHHh
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRWLR 155 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~----~~~~r 155 (325)
+++ ||+|+|+++ .+ |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++.... ....+
T Consensus 2 ~~~-~l~~~~~~~---~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 74 (214)
T cd03297 2 LCV-DIEKRLPDF---TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ 74 (214)
T ss_pred cee-eeeEecCCe---ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHh
Confidence 345 999999763 34 99999999 999999999999999999999999999999999999875321 23456
Q ss_pred cceEEEccCCcCc-cccHHHHHhcCCCCCC---CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 020527 156 EKIGFVGQEPQLL-QMDIKSNIMYGCPKDV---KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 231 (325)
Q Consensus 156 ~~i~~v~Q~~~l~-~~tv~enl~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 231 (325)
+.++|+||++.+| ..|++||+.++..... ..+++.+.++..++.+..++. ..+||||||||++||||
T Consensus 75 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~~qrv~la~a 145 (214)
T cd03297 75 RKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRY---------PAQLSGGEKQRVALARA 145 (214)
T ss_pred hcEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcC---------cccCCHHHHHHHHHHHH
Confidence 7899999999888 5799999986522111 112233344444444433332 36799999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEc
Q 020527 232 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVG 301 (325)
Q Consensus 232 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g 301 (325)
|+.+|+++||||||++||+.+++.+.+.+++++++ .|+|+|++|||++.+. .||++++|++|++++.|
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 146 LAAQPELLLLDEPFSALDRALRLQLLPELKQIKKN--LNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH--cCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999998653 3789999999999986 49999999999998764
No 240
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-48 Score=351.56 Aligned_cols=219 Identities=27% Similarity=0.449 Sum_probs=175.6
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCC-----CCeEEECCEeCCC--CCH
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-----DGQIYIDGFPLTD--LDI 151 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~-----~G~I~i~g~~i~~--~~~ 151 (325)
.++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. ...
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 4899999999974 36999999999999999999999999999999999999874 8999999998864 233
Q ss_pred HHHhcceEEEccCCcCcc-ccHHHHHhcCCC-CCC-CHHHHHH----HHHHcCHHHHHHhCCCCcccccCCCCCChHHHH
Q 020527 152 RWLREKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDV-KNEDIEW----AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 224 (325)
Q Consensus 152 ~~~r~~i~~v~Q~~~l~~-~tv~enl~~~~~-~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~Q 224 (325)
..+++.++|+||++.+|+ .|++||+.++.. ... ..+...+ .++..++...+.. . ......+|||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~---~--~~~~~~~LS~G~~q 155 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKD---R--LKTPATGLSGGQQQ 155 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhh---h--hcCCcccCCHHHHH
Confidence 456778999999998885 799999976421 111 1221111 1222222111100 0 01223679999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcCh
Q 020527 225 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 303 (325)
Q Consensus 225 Rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~ 303 (325)
|++|||||+.+|++|||||||++||+.++..+.+.|+++++ ++|+|++||+++.+.. |||+++|++|++++.|++
T Consensus 156 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~----~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 231 (252)
T PRK14272 156 RLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK----VTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPT 231 (252)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc----CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999852 5799999999999875 999999999999999999
Q ss_pred HHHhhc
Q 020527 304 AELLHK 309 (325)
Q Consensus 304 ~~l~~~ 309 (325)
++++..
T Consensus 232 ~~~~~~ 237 (252)
T PRK14272 232 DQLFTN 237 (252)
T ss_pred HHHHhC
Confidence 998764
No 241
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=3.8e-48 Score=386.02 Aligned_cols=215 Identities=28% Similarity=0.412 Sum_probs=179.3
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHH-hcc
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REK 157 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~-r~~ 157 (325)
.|+++|++++|+++ .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+...+ ++.
T Consensus 11 ~l~~~~l~~~~~~~---~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYSGV---EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeCCc---eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 59999999999753 59999999999999999999999999999999999999999999999999876655444 357
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCCCCC-CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 020527 158 IGFVGQEPQLL-QMDIKSNIMYGCPKDV-KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 235 (325)
Q Consensus 158 i~~v~Q~~~l~-~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~ 235 (325)
++|+||++.++ ..||+||+.++..... ..+.+.++++..++.+. ......+|||||||||+|||||+.+
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~---------~~~~~~~LSgG~~qrv~la~aL~~~ 158 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLD---------LDSSAGSLEVADRQIVEILRGLMRD 158 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCcc---------ccCChhhCCHHHHHHHHHHHHHHcC
Confidence 99999999887 5799999988632110 01222333333333222 2222367999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527 236 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 308 (325)
Q Consensus 236 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 308 (325)
|++|||||||++||+.++..+.+.|+++++ +|+|||++|||++.+.. ||++++|++|++++.|+++++..
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 159 SRILILDEPTASLTPAETERLFSRIRELLA---QGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 999999999999999999999999999864 37899999999999865 99999999999999999988754
No 242
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-48 Score=351.04 Aligned_cols=219 Identities=30% Similarity=0.492 Sum_probs=175.6
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC--C---CCCeEEECCEeCCCC--CH
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--P---SDGQIYIDGFPLTDL--DI 151 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~--~---~~G~I~i~g~~i~~~--~~ 151 (325)
+|+++||+++|+. +.+|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++... ..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 4899999999974 369999999999999999999999999999999999975 4 599999999988532 23
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCC-CC-CCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527 152 RWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KD-VKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 225 (325)
Q Consensus 152 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~-~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR 225 (325)
..+++.++|+||++.+|+.|+++|+.++.. .. ... +.+...++..++...+.. .......+||||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-----~~~~~~~~LS~Gq~qr 156 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKD-----HLHESALSLSGGQQQR 156 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhh-----HHhcCcccCCHHHHHH
Confidence 455778999999998888899999986421 11 111 112222333322111100 0111236799999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChH
Q 020527 226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 304 (325)
Q Consensus 226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~ 304 (325)
++|||||+.+|+++||||||++||+.++..+.+.|+++.+ +.|+|++||+++.+.. ||+|++|++|++++.|++.
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~----~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14255 157 VCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD----QYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTK 232 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh----CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999853 4699999999999864 9999999999999999999
Q ss_pred HHhhc
Q 020527 305 ELLHK 309 (325)
Q Consensus 305 ~l~~~ 309 (325)
+++.+
T Consensus 233 ~~~~~ 237 (252)
T PRK14255 233 QMFLN 237 (252)
T ss_pred HHhcC
Confidence 98765
No 243
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=9.8e-48 Score=350.40 Aligned_cols=221 Identities=27% Similarity=0.376 Sum_probs=175.3
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEe-----CCCCCHHH
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP-----LTDLDIRW 153 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~-----i~~~~~~~ 153 (325)
.|+++||+++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +...+...
T Consensus 3 ~l~~~~l~~~~~~~---~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 3 LLQVSGLSKSYGGG---KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred eEEEeeeEEEeCCc---eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 48999999999753 58999999999999999999999999999999999999999999999987 65544432
Q ss_pred ----HhcceEEEccCCcC--c-cccHHHHHhcCC--CCCCCHHHHHHHHHHcCHHHHHHhCCCCc-ccccCCCCCChHHH
Q 020527 154 ----LREKIGFVGQEPQL--L-QMDIKSNIMYGC--PKDVKNEDIEWAAKQAYVHEFILSLPCGY-ETLVDDDLLSGGQK 223 (325)
Q Consensus 154 ----~r~~i~~v~Q~~~l--~-~~tv~enl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~LSgGq~ 223 (325)
+++.++|+||++.. + ..|+.+|+.+.. ......... ...+.++++.++... ........||||||
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~ 154 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RAAAHDWLEEVEIDPTRIDDLPRAFSGGMQ 154 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHcCCChhhhhcCchhcCHHHH
Confidence 24579999999853 2 468888885421 000001010 112334455444321 11222367999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcC
Q 020527 224 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 302 (325)
Q Consensus 224 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~ 302 (325)
|||+|||||+.+|++|||||||++||+.+++.+.+.|+++.++ .|.|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 155 qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~ 232 (253)
T TIGR02323 155 QRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRD--LGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGL 232 (253)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999988642 47899999999999875 99999999999999999
Q ss_pred hHHHhhc
Q 020527 303 HAELLHK 309 (325)
Q Consensus 303 ~~~l~~~ 309 (325)
++++.+.
T Consensus 233 ~~~~~~~ 239 (253)
T TIGR02323 233 TDQVLDD 239 (253)
T ss_pred HHHHhcC
Confidence 9988754
No 244
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-47 Score=349.53 Aligned_cols=220 Identities=32% Similarity=0.491 Sum_probs=179.3
Q ss_pred ccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC-----CCCCeEEECCEeCCCC--C
Q 020527 78 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTDL--D 150 (325)
Q Consensus 78 ~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~-----~~~G~I~i~g~~i~~~--~ 150 (325)
..++++||++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.++... +
T Consensus 2 ~~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 78 (250)
T PRK14266 2 YRIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVD 78 (250)
T ss_pred cEEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccccccc
Confidence 45899999999974 359999999999999999999999999999999999864 4899999999988642 3
Q ss_pred HHHHhcceEEEccCCcCccccHHHHHhcCCC-CC-CCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHH
Q 020527 151 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KD-VKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 224 (325)
Q Consensus 151 ~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~-~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~Q 224 (325)
...++++++|+||++.+|+.|++||+.++.. .. ... +.+.++++..++.+.+... .......|||||||
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-----~~~~~~~LS~Gq~q 153 (250)
T PRK14266 79 VVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK-----LDKSALGLSGGQQQ 153 (250)
T ss_pred HHHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH-----HhCCcccCCHHHHH
Confidence 4456788999999999888899999986521 11 111 2233344554543322111 01123579999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcCh
Q 020527 225 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 303 (325)
Q Consensus 225 Rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~ 303 (325)
|++|||||+.+|++|||||||++||+.++..+.+.|+++++ +.|||++||+++.+.. ||++++|++|++++.|++
T Consensus 154 rv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~----~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~ 229 (250)
T PRK14266 154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE----DYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLT 229 (250)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc----CCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCH
Confidence 99999999999999999999999999999999999999852 6799999999998865 999999999999999999
Q ss_pred HHHhhc
Q 020527 304 AELLHK 309 (325)
Q Consensus 304 ~~l~~~ 309 (325)
+++...
T Consensus 230 ~~~~~~ 235 (250)
T PRK14266 230 DQIFIN 235 (250)
T ss_pred HHHHhC
Confidence 998654
No 245
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.3e-48 Score=354.68 Aligned_cols=212 Identities=25% Similarity=0.412 Sum_probs=172.8
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.|+++||+++|+++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...++.+
T Consensus 6 ~l~~~~l~~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i 80 (272)
T PRK15056 6 GIVVNDVTVTWRNG--HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLV 80 (272)
T ss_pred eEEEEeEEEEecCC--cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceE
Confidence 48999999999632 369999999999999999999999999999999999999999999999998742 1123469
Q ss_pred EEEccCCcC---ccccHHHHHhcCCCC------CC---CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHH
Q 020527 159 GFVGQEPQL---LQMDIKSNIMYGCPK------DV---KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 226 (325)
Q Consensus 159 ~~v~Q~~~l---~~~tv~enl~~~~~~------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv 226 (325)
+|+||++.+ +..++++|+.++... .. ..+.+.++++..++.+..++. ..+||||||||+
T Consensus 81 ~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~---------~~~LSgG~~qrv 151 (272)
T PRK15056 81 AYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQ---------IGELSGGQKKRV 151 (272)
T ss_pred EEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCC---------cccCCHHHHHHH
Confidence 999999865 245789998653210 00 112233445555555444332 257999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHH
Q 020527 227 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAE 305 (325)
Q Consensus 227 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~ 305 (325)
+|||||+.+|++|||||||++||+.+++.+.+.|.++++ +|+|||++|||++.+. .||+++++ +|++++.|++++
T Consensus 152 ~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~---~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~ 227 (272)
T PRK15056 152 FLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRD---EGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTET 227 (272)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHh
Confidence 999999999999999999999999999999999999864 3789999999999885 59999777 899999999998
Q ss_pred Hhh
Q 020527 306 LLH 308 (325)
Q Consensus 306 l~~ 308 (325)
+++
T Consensus 228 ~~~ 230 (272)
T PRK15056 228 TFT 230 (272)
T ss_pred ccC
Confidence 764
No 246
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.3e-47 Score=402.06 Aligned_cols=295 Identities=26% Similarity=0.392 Sum_probs=253.0
Q ss_pred ehHHH-HhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEEEE
Q 020527 5 LGGMS-IMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFV 83 (325)
Q Consensus 5 ~g~~~-v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 83 (325)
+++|. ...+.+|....++.+.++..+-.|+..+...+....++.++.+|+.+++..++.................++++
T Consensus 443 F~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~i~i~ 522 (1381)
T KOG0054|consen 443 FVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENAIEIK 522 (1381)
T ss_pred HHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCCCCceEEEe
Confidence 34444 44567788788888888999999999999999999999999999999998765432211100111122359999
Q ss_pred EEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEcc
Q 020527 84 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQ 163 (325)
Q Consensus 84 ~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q 163 (325)
|.+++++.....+.|+||||+|++|+.+||+||-|||||+||.+|+|.++..+|+|.++|. ++|+||
T Consensus 523 ~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs-------------iaYv~Q 589 (1381)
T KOG0054|consen 523 NGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS-------------VAYVPQ 589 (1381)
T ss_pred eeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe-------------EEEecc
Confidence 9999997633345999999999999999999999999999999999999999999999984 999999
Q ss_pred CCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEE
Q 020527 164 EPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLL 241 (325)
Q Consensus 164 ~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~llll 241 (325)
.|.++++||+|||.||.+ .++++.+++.+.+.+++.++.+|.|..|.+++ -+|||||||||+||||+.++++|+||
T Consensus 590 ~pWI~ngTvreNILFG~~--~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLL 667 (1381)
T KOG0054|consen 590 QPWIQNGTVRENILFGSP--YDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLL 667 (1381)
T ss_pred ccHhhCCcHHHhhhcCcc--ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEE
Confidence 999999999999999953 55778889999999999999999999999986 58999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHH-HHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHH
Q 020527 242 DEATSALDSESEHYVKGVL-HALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVK 318 (325)
Q Consensus 242 DEPts~LD~~~~~~i~~~l-~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 318 (325)
|.|+|++|....+.+++-. +.+ -+++|+|+|||.++.+..||.|++|++|+|.+.|+++++++....+.++..
T Consensus 668 DDplSAVDahvg~~if~~ci~~~----L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~~~~l~~ 741 (1381)
T KOG0054|consen 668 DDPLSAVDAHVGKHIFEECIRGL----LRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKSGGDFAELAH 741 (1381)
T ss_pred cCcchhhhHhhhHHHHHHHHHhh----hcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhcchhHHHHhh
Confidence 9999999999888877654 333 257899999999999999999999999999999999999987777777643
No 247
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-48 Score=391.92 Aligned_cols=226 Identities=30% Similarity=0.467 Sum_probs=184.2
Q ss_pred cEEEEEEEEECCCC--------CCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCC
Q 020527 79 HVQFVNISFHYPSR--------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 150 (325)
Q Consensus 79 ~i~~~~v~~~y~~~--------~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~ 150 (325)
.|+++||++.|+.. ....+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 59999999999621 0135999999999999999999999999999999999999999999999999987654
Q ss_pred HH---HHhcceEEEccCC--cCc-cccHHHHHhcCCC--CCCCH----HHHHHHHHHcCHH-HHHHhCCCCcccccCCCC
Q 020527 151 IR---WLREKIGFVGQEP--QLL-QMDIKSNIMYGCP--KDVKN----EDIEWAAKQAYVH-EFILSLPCGYETLVDDDL 217 (325)
Q Consensus 151 ~~---~~r~~i~~v~Q~~--~l~-~~tv~enl~~~~~--~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 217 (325)
.. .++++|+|+||++ .++ ..||.+|+.++.. ..... +++.+.++.+++. +..++.+ .+
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~---------~~ 463 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYP---------HE 463 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCc---------cc
Confidence 32 3567899999998 366 5799999976421 10111 2333445555552 3333333 67
Q ss_pred CChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCE
Q 020527 218 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR 296 (325)
Q Consensus 218 LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~ 296 (325)
|||||||||+|||||+.+|++|||||||++||+.++.++.++|++++++ .|.|||+||||++.+.. ||||++|++|+
T Consensus 464 LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~--~g~tvi~isHdl~~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 464 FSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRD--FGIAYLFISHDMAVVERISHRVAVMYLGQ 541 (623)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999999753 47899999999999865 99999999999
Q ss_pred EEEEcChHHHhhc-CHHHHH
Q 020527 297 IIEVGNHAELLHK-GRLYAK 315 (325)
Q Consensus 297 i~~~g~~~~l~~~-~~~~~~ 315 (325)
+++.|++++++.+ ...|.+
T Consensus 542 iv~~g~~~~i~~~p~~~~~~ 561 (623)
T PRK10261 542 IVEIGPRRAVFENPQHPYTR 561 (623)
T ss_pred EEEecCHHHHhcCCCCHHHH
Confidence 9999999999864 333433
No 248
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=1.6e-47 Score=349.32 Aligned_cols=224 Identities=24% Similarity=0.400 Sum_probs=177.7
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC----CCCeEEECCEeCCCCCHHHH
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP----SDGQIYIDGFPLTDLDIRWL 154 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~----~~G~I~i~g~~i~~~~~~~~ 154 (325)
.|+++|++++| + +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++... ...
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALR 77 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccc
Confidence 48999999999 3 2599999999999999999999999999999999999999 999999999988532 222
Q ss_pred hcceEEEccCCc-Cc--cccHHHHHhcCC---CCCCCHHHHHHHHHHcCHHH---HHHhCCCCcccccCCCCCChHHHHH
Q 020527 155 REKIGFVGQEPQ-LL--QMDIKSNIMYGC---PKDVKNEDIEWAAKQAYVHE---FILSLPCGYETLVDDDLLSGGQKQR 225 (325)
Q Consensus 155 r~~i~~v~Q~~~-l~--~~tv~enl~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~LSgGq~QR 225 (325)
++.++|+||++. .| ..|+.+|+.+.. ......+.+.+.++.+++.+ .+++ ...+||||||||
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~~LS~Gq~qr 148 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKL---------YPFEMSGGMLQR 148 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhc---------CCcccCHHHHHH
Confidence 467999999985 34 368888875421 11111223344444444432 1111 235799999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChH
Q 020527 226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA 304 (325)
Q Consensus 226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~ 304 (325)
++|||||+.+|++|||||||++||+.++..+.+.|+++.++ .|.|||++||+++.+. .||++++|++|++++.|+++
T Consensus 149 v~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~--~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 226 (254)
T PRK10418 149 MMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQK--RALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVE 226 (254)
T ss_pred HHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHh--cCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHH
Confidence 99999999999999999999999999999999999998653 4789999999999986 59999999999999999999
Q ss_pred HHhhcC--HHHHHHHHH
Q 020527 305 ELLHKG--RLYAKLVKR 319 (325)
Q Consensus 305 ~l~~~~--~~~~~~~~~ 319 (325)
++.+.. ...+.++..
T Consensus 227 ~~~~~~~~~~~~~~~~~ 243 (254)
T PRK10418 227 TLFNAPKHAVTRSLVSA 243 (254)
T ss_pred HHhhCCCCHHHHHHHHh
Confidence 987643 234444443
No 249
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=4.9e-48 Score=384.56 Aligned_cols=218 Identities=27% Similarity=0.390 Sum_probs=179.4
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHH-Hhcc
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREK 157 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~-~r~~ 157 (325)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+... .+++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999974 35999999999999999999999999999999999999999999999999986544433 3567
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCCCC-----CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 020527 158 IGFVGQEPQLL-QMDIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 231 (325)
Q Consensus 158 i~~v~Q~~~l~-~~tv~enl~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 231 (325)
++|+||++.++ ..||+||+.++.... ...... ...+.++++.+...........+|||||||||+||||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~a 155 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKM-----YAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKV 155 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHH-----HHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHH
Confidence 99999999887 579999998763211 111111 1123344555443322233346899999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHh
Q 020527 232 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 307 (325)
Q Consensus 232 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 307 (325)
|+.+|++|||||||++||+.++..+.+.|+++++ .|+|||++|||++.+.. ||+|++|++|+++..|+++++.
T Consensus 156 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 156 LSFESKVIIMDEPTDALTDTETESLFRVIRELKS---QGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred HhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 9999999999999999999999999999999864 37899999999999865 9999999999999999887764
No 250
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.8e-47 Score=341.17 Aligned_cols=209 Identities=28% Similarity=0.454 Sum_probs=175.0
Q ss_pred EEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCH----HHHhc
Q 020527 81 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI----RWLRE 156 (325)
Q Consensus 81 ~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~----~~~r~ 156 (325)
.+.|++++|+.. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ...|+
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 578999999753 469999999999999999999999999999999999999999999999998764431 23456
Q ss_pred ceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcC
Q 020527 157 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILR 234 (325)
Q Consensus 157 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~ 234 (325)
.++|+||++.+|+.|++||+.++.. ...+....+.+..++.+.++..+.++++... ...||||||||++|||||+.
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 157 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSP--FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQ 157 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCc--CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhh
Confidence 7999999998888899999987532 2234445566677777777766666555433 46799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHH--HHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCE
Q 020527 235 DPAILLLDEATSALDSESEHYVKG--VLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR 296 (325)
Q Consensus 235 ~p~llllDEPts~LD~~~~~~i~~--~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~ 296 (325)
+|+++||||||++||+.++..+.+ +++.+++ .|.|+|++||+++.+..||++++|++|.
T Consensus 158 ~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~---~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 158 NTNIVFLDDPFSALDIHLSDHLMQEGILKFLQD---DKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHHHhc---CCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 999999999999999999999988 6666643 4789999999999887799999999884
No 251
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-48 Score=385.78 Aligned_cols=224 Identities=25% Similarity=0.406 Sum_probs=180.5
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHH-Hhcc
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREK 157 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~-~r~~ 157 (325)
.|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+... .+++
T Consensus 5 ~l~~~~l~~~~~~~---~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFGPV---HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcCCe---EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 48999999999743 5999999999999999999999999999999999999999999999999987665543 3467
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCCCC---CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 020527 158 IGFVGQEPQLL-QMDIKSNIMYGCPKD---VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 233 (325)
Q Consensus 158 i~~v~Q~~~l~-~~tv~enl~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 233 (325)
++|+||++.++ ..||+||+.++.... ..............+.++++.+...........+|||||||||+|||||+
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~ 161 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLM 161 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHh
Confidence 99999999887 579999998753110 00000000000112334455444332222334689999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527 234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 308 (325)
Q Consensus 234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 308 (325)
.+|++|||||||++||+.++..+.++|+++++ .|+|||++|||++.+.. ||++++|++|+++..|+++++..
T Consensus 162 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (510)
T PRK09700 162 LDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK---EGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSN 234 (510)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCCH
Confidence 99999999999999999999999999999964 37899999999999865 99999999999999999888754
No 252
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.1e-48 Score=331.82 Aligned_cols=171 Identities=34% Similarity=0.662 Sum_probs=156.1
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 159 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~ 159 (325)
++++|++++|++. ++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..+++.++
T Consensus 1 l~~~~l~~~~~~~---~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (173)
T cd03230 1 IEVRNLSKRYGKK---TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIG 76 (173)
T ss_pred CEEEEEEEEECCe---eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEE
Confidence 4689999999743 5999999999999999999999999999999999999999999999999886544 45678899
Q ss_pred EEccCCcCcc-ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCE
Q 020527 160 FVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI 238 (325)
Q Consensus 160 ~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~l 238 (325)
|+||++.+|. .|+.||+. |||||+||++|||||+.+|++
T Consensus 77 ~~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~~p~i 116 (173)
T cd03230 77 YLPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLHDPEL 116 (173)
T ss_pred EEecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHcCCCE
Confidence 9999998875 69999973 799999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEE
Q 020527 239 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRI 297 (325)
Q Consensus 239 lllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i 297 (325)
+||||||++||+.++..+.+.|+++.+ +|.|+|++|||++.+. .||++++|++|++
T Consensus 117 lllDEPt~~LD~~~~~~l~~~l~~~~~---~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 117 LILDEPTSGLDPESRREFWELLRELKK---EGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHH---CCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 999999999999999999999999975 3789999999999887 5999999999964
No 253
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.1e-48 Score=332.96 Aligned_cols=174 Identities=45% Similarity=0.698 Sum_probs=158.0
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCC--HHHHhcc
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD--IRWLREK 157 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~--~~~~r~~ 157 (325)
|+++|++++|++ .++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.
T Consensus 1 i~~~~l~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (178)
T cd03229 1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR 77 (178)
T ss_pred CEEEEEEEEECC---eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhc
Confidence 468999999974 35999999999999999999999999999999999999999999999999987654 4556788
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 020527 158 IGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 236 (325)
Q Consensus 158 i~~v~Q~~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p 236 (325)
++|+||++.++ ..|++||+.+. ||||||||++|||||+.+|
T Consensus 78 i~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p 119 (178)
T cd03229 78 IGMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDP 119 (178)
T ss_pred EEEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHCCC
Confidence 99999999887 47999998652 7999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCE
Q 020527 237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGR 296 (325)
Q Consensus 237 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~ 296 (325)
+++||||||++||+.++..+.+.+++++++ .+.|+|++|||++.+. .||++++|++|+
T Consensus 120 ~llilDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 120 DVLLLDEPTSALDPITRREVRALLKSLQAQ--LGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 999999999999999999999999998752 3689999999999997 499999999884
No 254
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-48 Score=385.29 Aligned_cols=219 Identities=28% Similarity=0.433 Sum_probs=180.1
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC--CCCeEEECCEeCCCCCHHH-Hh
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP--SDGQIYIDGFPLTDLDIRW-LR 155 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~--~~G~I~i~g~~i~~~~~~~-~r 155 (325)
+|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|.++...+... .+
T Consensus 5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 4999999999974 3699999999999999999999999999999999999996 8999999999987655443 45
Q ss_pred cceEEEccCCcCc-cccHHHHHhcCCCCC----CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 020527 156 EKIGFVGQEPQLL-QMDIKSNIMYGCPKD----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 230 (325)
Q Consensus 156 ~~i~~v~Q~~~l~-~~tv~enl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 230 (325)
+.++|+||++.++ ..|++||+.++.... ...+.. ...+.++++.+...........+|||||||||+|||
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~ 156 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAM-----YLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAK 156 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHH-----HHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHH
Confidence 7899999999887 579999998763211 111111 112334455544332222334679999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527 231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 308 (325)
Q Consensus 231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 308 (325)
||+.+|++|||||||++||+.++..+.+.|.++++ +|+|||++|||++.+.. ||++++|++|+++..|+++++..
T Consensus 157 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 232 (506)
T PRK13549 157 ALNKQARLLILDEPTASLTESETAVLLDIIRDLKA---HGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMTE 232 (506)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCCH
Confidence 99999999999999999999999999999999964 47899999999999865 99999999999999999887643
No 255
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-47 Score=330.32 Aligned_cols=171 Identities=61% Similarity=0.951 Sum_probs=156.9
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 159 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~ 159 (325)
|+++|++++|+++ ...+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...++++++
T Consensus 1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 4789999999753 136999999999999999999999999999999999999999999999999987666666778899
Q ss_pred EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEE
Q 020527 160 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 239 (325)
Q Consensus 160 ~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ll 239 (325)
|+||++.+|+.|++||+ ||||||||++||||++.+|+++
T Consensus 80 ~~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~~p~ll 118 (171)
T cd03228 80 YVPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPIL 118 (171)
T ss_pred EEcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhcCCCEE
Confidence 99999988888999987 7999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCE
Q 020527 240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR 296 (325)
Q Consensus 240 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~ 296 (325)
||||||++||+.++..+.+.++++. +++|+|++|||++.+..||++++|++|+
T Consensus 119 llDEP~~gLD~~~~~~l~~~l~~~~----~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 119 ILDEATSALDPETEALILEALRALA----KGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHhc----CCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 9999999999999999999999884 2589999999999986799999999984
No 256
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-47 Score=350.31 Aligned_cols=218 Identities=30% Similarity=0.439 Sum_probs=176.7
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC-----CCCeEEECCEeCCC----C
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD----L 149 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~-----~~G~I~i~g~~i~~----~ 149 (325)
.|+++|++++|+++ ++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++.. .
T Consensus 16 ~l~~~~l~~~~~~~---~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~ 92 (265)
T PRK14252 16 KSEVNKLNFYYGGY---QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEV 92 (265)
T ss_pred eEEEEEEEEEECCe---eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccccc
Confidence 59999999999753 599999999999999999999999999999999999875 79999999987642 2
Q ss_pred CHHHHhcceEEEccCCcCccccHHHHHhcCCC-CCCC-----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHH
Q 020527 150 DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDVK-----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK 223 (325)
Q Consensus 150 ~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~ 223 (325)
....+++.++|+||++.+|+.|++||+.++.. .... ++.+..+++..++.+.+... ......+|||||+
T Consensus 93 ~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-----~~~~~~~LS~G~~ 167 (265)
T PRK14252 93 DPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDR-----LGDLAFNLSGGQQ 167 (265)
T ss_pred CHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHH-----HhCCcccCCHHHH
Confidence 23456788999999999887799999986521 0111 12233344444332111100 0111257999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcC
Q 020527 224 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGN 302 (325)
Q Consensus 224 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~ 302 (325)
||++|||||+.+|+++||||||++||+.++..+.+.|+++++ +.|+|++||+++.+. .|||+++|++|++++.|+
T Consensus 168 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~----~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~ 243 (265)
T PRK14252 168 QRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN----KVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243 (265)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh----CCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999999853 479999999999986 599999999999999999
Q ss_pred hHHHhh
Q 020527 303 HAELLH 308 (325)
Q Consensus 303 ~~~l~~ 308 (325)
++++..
T Consensus 244 ~~~~~~ 249 (265)
T PRK14252 244 TDTIFI 249 (265)
T ss_pred HHHHHh
Confidence 999875
No 257
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.1e-49 Score=334.79 Aligned_cols=224 Identities=26% Similarity=0.446 Sum_probs=197.7
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
+|+++||+|+|+++ .+++++|++|++|.+++|+|||||||||||.++++|+++++|+|+++|.++..++.+++.+++
T Consensus 1 MI~i~nv~K~y~~~---~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~l 77 (252)
T COG4604 1 MITIENVSKSYGTK---VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKL 77 (252)
T ss_pred CeeehhhhHhhCCE---EeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHH
Confidence 37899999999864 699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCCC-------CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 020527 159 GFVGQEPQLL-QMDIKSNIMYGCPKD-------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 230 (325)
Q Consensus 159 ~~v~Q~~~l~-~~tv~enl~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 230 (325)
+.+-|+.++- ..||+|-+.||+.+. .++..+.++++...++++-+++- .+||||||||.-||.
T Consensus 78 SILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryL---------d~LSGGQrQRAfIAM 148 (252)
T COG4604 78 SILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYL---------DELSGGQRQRAFIAM 148 (252)
T ss_pred HHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhH---------Hhcccchhhhhhhhe
Confidence 9999998875 789999999986431 12334566777666666655543 579999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhc
Q 020527 231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 309 (325)
Q Consensus 231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 309 (325)
.++++.+.++||||.++||.+...++++.|+++.++ -|+||++|-||++++.. +|+|+-|++|+++..|+|+++++.
T Consensus 149 VlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~e--l~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~ 226 (252)
T COG4604 149 VLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADE--LGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226 (252)
T ss_pred eeeccCcEEEecCcccccchHHHHHHHHHHHHHHHH--hCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH
Confidence 999999999999999999999999999999999875 58999999999999975 999999999999999999999875
Q ss_pred CHHHHHHH
Q 020527 310 GRLYAKLV 317 (325)
Q Consensus 310 ~~~~~~~~ 317 (325)
+ ...++|
T Consensus 227 ~-~L~eiy 233 (252)
T COG4604 227 E-ILSEIY 233 (252)
T ss_pred H-HHHHHh
Confidence 4 344443
No 258
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=5.9e-48 Score=341.11 Aligned_cols=196 Identities=33% Similarity=0.510 Sum_probs=161.4
Q ss_pred EEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCH----HHHhcc
Q 020527 82 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI----RWLREK 157 (325)
Q Consensus 82 ~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~----~~~r~~ 157 (325)
++|+++.|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... ...++.
T Consensus 1 i~~l~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 77 (206)
T TIGR03608 1 LKNISKKFGDK---IILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREK 77 (206)
T ss_pred CcceEEEECCE---EEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhC
Confidence 47899999743 59999999999999999999999999999999999999999999999998654321 234678
Q ss_pred eEEEccCCcCcc-ccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 020527 158 IGFVGQEPQLLQ-MDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 231 (325)
Q Consensus 158 i~~v~Q~~~l~~-~tv~enl~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 231 (325)
++|++|++.+|+ .|++||+.++... ... .+.+.++++..++.+..++.+ .+||||||||++||||
T Consensus 78 i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~lS~G~~qr~~lara 148 (206)
T TIGR03608 78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKI---------YELSGGEQQRVALARA 148 (206)
T ss_pred eeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCCh---------hhCCHHHHHHHHHHHH
Confidence 999999999885 7999999874211 111 223344555555544433332 5799999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEE
Q 020527 232 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 292 (325)
Q Consensus 232 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l 292 (325)
|+.+|++|||||||++||+.+++.+.+.|+++.+ .|.|+|++||+++.+..||++++|
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 149 ILKDPPLILADEPTGSLDPKNRDEVLDLLLELND---EGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHhhcCEEEeC
Confidence 9999999999999999999999999999999864 378999999999977779999875
No 259
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=2e-46 Score=346.58 Aligned_cols=239 Identities=28% Similarity=0.411 Sum_probs=189.7
Q ss_pred HHHHHhHhcCCCCccccccccccCCcccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcC
Q 020527 52 EKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 52 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl 131 (325)
+.+.+++..++++... .+.......|+++|+++. . +++|+++||+|++||+++|+||||||||||+++|+|+
T Consensus 15 ~~~~~~~~~~~~~~~~---~~~~~~~~~l~i~nls~~--~---~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl 86 (282)
T cd03291 15 EGFGELLEKAKQENND---RKHSSDDNNLFFSNLCLV--G---APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGE 86 (282)
T ss_pred HHHHHHHhcccccccc---cccCCCCCeEEEEEEEEe--c---ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4555666665543221 111222335999999985 2 2599999999999999999999999999999999999
Q ss_pred CCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccc
Q 020527 132 YEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET 211 (325)
Q Consensus 132 ~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (325)
++|++|+|.++| .|+|+||++.+++.|++||+.++.. .........++..++.+.+..++.+..+
T Consensus 87 ~~p~~G~I~i~g-------------~i~yv~q~~~l~~~tv~enl~~~~~--~~~~~~~~~l~~~~l~~~l~~~~~~~~~ 151 (282)
T cd03291 87 LEPSEGKIKHSG-------------RISFSSQFSWIMPGTIKENIIFGVS--YDEYRYKSVVKACQLEEDITKFPEKDNT 151 (282)
T ss_pred CCCCCcEEEECC-------------EEEEEeCcccccccCHHHHhhcccc--cCHHHHHHHHHHhCCHHHHHhccccccc
Confidence 999999999988 3999999999888899999987632 1223344555666777777777665544
Q ss_pred ccC--CCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHH-HHhhccCCCCeEEEEEecCchHHHhcCE
Q 020527 212 LVD--DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL-HALRNDCKTKRTVIVIAHRLSTIKAVDR 288 (325)
Q Consensus 212 ~~~--~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l-~~l~~~~~~g~tvi~vtH~~~~~~~~d~ 288 (325)
... ...||||||||++|||||+.+|++|||||||++||+.++..+.+.+ ..+. .+.|||++||+++.+..||+
T Consensus 152 ~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~----~~~tIiiisH~~~~~~~~d~ 227 (282)
T cd03291 152 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM----ANKTRILVTSKMEHLKKADK 227 (282)
T ss_pred eecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh----CCCEEEEEeCChHHHHhCCE
Confidence 332 3689999999999999999999999999999999999999898754 5553 36799999999998877999
Q ss_pred EEEEeCCEEEEEcChHHHhhcCHHHHHHH
Q 020527 289 IVVIDDGRIIEVGNHAELLHKGRLYAKLV 317 (325)
Q Consensus 289 v~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 317 (325)
+++|++|++++.|+++++......|.+.+
T Consensus 228 i~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 256 (282)
T cd03291 228 ILILHEGSSYFYGTFSELQSLRPDFSSKL 256 (282)
T ss_pred EEEEECCEEEEECCHHHHHhcchHHHHHH
Confidence 99999999999999999876544444333
No 260
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.1e-47 Score=381.06 Aligned_cols=213 Identities=23% Similarity=0.283 Sum_probs=180.9
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
+|+++|++++|+++ .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+...+++.+
T Consensus 3 ~l~~~~l~~~~~~~---~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i 79 (490)
T PRK10938 3 SLQISQGTFRLSDT---KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLV 79 (490)
T ss_pred eEEEEeEEEEcCCe---eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHh
Confidence 59999999999753 599999999999999999999999999999999999999999999999887655555566779
Q ss_pred EEEccCCcC--c-------cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 020527 159 GFVGQEPQL--L-------QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 229 (325)
Q Consensus 159 ~~v~Q~~~l--~-------~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA 229 (325)
+|+||++.+ + ..|+++|+.++. ...+++.++++..++.+..++.+ .+|||||||||+||
T Consensus 80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~la 147 (490)
T PRK10938 80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEV---KDPARCEQLAQQFGITALLDRRF---------KYLSTGETRKTLLC 147 (490)
T ss_pred ceeccCcchhhcccchhhccccHHHhcccch---hHHHHHHHHHHHcCCHhhhhCCc---------ccCCHHHHHHHHHH
Confidence 999998753 1 358888876531 12334555666666655544443 57999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527 230 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 308 (325)
Q Consensus 230 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 308 (325)
|||+.+|++|||||||++||+.+++.+.+.|+++++ +|+|||++|||++.+.. ||++++|++|+++..|+++++++
T Consensus 148 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 224 (490)
T PRK10938 148 QALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQ---SGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ 224 (490)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh---cCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999864 37899999999999865 99999999999999999988765
Q ss_pred c
Q 020527 309 K 309 (325)
Q Consensus 309 ~ 309 (325)
.
T Consensus 225 ~ 225 (490)
T PRK10938 225 Q 225 (490)
T ss_pred c
Confidence 3
No 261
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-47 Score=348.41 Aligned_cols=218 Identities=28% Similarity=0.410 Sum_probs=178.9
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC-----CCCeEEECCEeCCCC--CHH
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDL--DIR 152 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~-----~~G~I~i~g~~i~~~--~~~ 152 (325)
+.++++++.|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... ...
T Consensus 9 ~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 9 MDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred EEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 789999999964 3699999999999999999999999999999999999986 799999999988542 233
Q ss_pred HHhcceEEEccCCcCccccHHHHHhcCCCCCC----CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 020527 153 WLREKIGFVGQEPQLLQMDIKSNIMYGCPKDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 228 (325)
Q Consensus 153 ~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 228 (325)
.+++.++|+||++.+|..|++||+.++..... ..+.+.++++..++.+.+... ......+|||||+||++|
T Consensus 86 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~-----~~~~~~~LS~G~~qrv~l 160 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDK-----LKVSGLSLSGGQQQRLCI 160 (261)
T ss_pred hhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhh-----hhCCcccCCHHHHHHHHH
Confidence 56778999999999888999999987532111 112334455555443322111 011235799999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEe--------CCEEEE
Q 020527 229 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVID--------DGRIIE 299 (325)
Q Consensus 229 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~--------~G~i~~ 299 (325)
||||+.+|++|||||||++||+.++..+.+.|+++. ++.|+|++||+++.+. .|||+++|+ +|++++
T Consensus 161 aral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~----~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~ 236 (261)
T PRK14263 161 ARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK----KDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVE 236 (261)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh----cCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEE
Confidence 999999999999999999999999999999999984 2579999999999885 599999996 899999
Q ss_pred EcChHHHhhc
Q 020527 300 VGNHAELLHK 309 (325)
Q Consensus 300 ~g~~~~l~~~ 309 (325)
.|+++++++.
T Consensus 237 ~g~~~~~~~~ 246 (261)
T PRK14263 237 MGPTAQIFQN 246 (261)
T ss_pred eCCHHHHHhC
Confidence 9999998764
No 262
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=1e-47 Score=344.67 Aligned_cols=207 Identities=29% Similarity=0.450 Sum_probs=167.0
Q ss_pred EEEEEEEEECCCCC-CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC---CCCCeEEECCEeCCCCCHHHHh
Q 020527 80 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE---PSDGQIYIDGFPLTDLDIRWLR 155 (325)
Q Consensus 80 i~~~~v~~~y~~~~-~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~---~~~G~I~i~g~~i~~~~~~~~r 155 (325)
+.++||+++|++.+ .+++++|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++. ...++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 67999999997531 2579999999999999999999999999999999999999 99999999999874 23567
Q ss_pred cceEEEccCCcCcc-ccHHHHHhcCCCC---C-CCHH----HHHH-HHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527 156 EKIGFVGQEPQLLQ-MDIKSNIMYGCPK---D-VKNE----DIEW-AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 225 (325)
Q Consensus 156 ~~i~~v~Q~~~l~~-~tv~enl~~~~~~---~-~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR 225 (325)
+.++|+||++.+|+ .|++||+.++... . .... .... .++..++.+..+ .....|||||+||
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---------~~~~~LS~G~~qr 151 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGG---------NLVKGISGGERRR 151 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhc---------ccccCcCHHHHHH
Confidence 88999999998885 6999999864210 0 0111 0111 222222222211 1235799999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCc-hHH-HhcCEEEEEeCCEEEEEc
Q 020527 226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL-STI-KAVDRIVVIDDGRIIEVG 301 (325)
Q Consensus 226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~-~~~-~~~d~v~~l~~G~i~~~g 301 (325)
++|||||+.+|+++||||||++||+.++..+.+.++++.+ .+.|+|++||++ +.+ ..||++++|++|++++.|
T Consensus 152 l~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~---~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 152 VSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR---RNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999999999999999999999999999864 378999999998 466 459999999999998764
No 263
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=5.4e-47 Score=345.33 Aligned_cols=210 Identities=27% Similarity=0.463 Sum_probs=177.2
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.|+++||+++|+++ .+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +..+
T Consensus 4 ~l~~~~l~~~~~~~---~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i 69 (251)
T PRK09544 4 LVSLENVSVSFGQR---RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRI 69 (251)
T ss_pred EEEEeceEEEECCc---eEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCE
Confidence 48999999999753 599999999999999999999999999999999999999999999986 2369
Q ss_pred EEEccCCcCcc---ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 020527 159 GFVGQEPQLLQ---MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 235 (325)
Q Consensus 159 ~~v~Q~~~l~~---~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~ 235 (325)
+|+||++.++. .|+.+|+.+. .....+++.++++..++.+.+++.+ ..||||||||++|||||+.+
T Consensus 70 ~~v~q~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGq~qrv~laral~~~ 138 (251)
T PRK09544 70 GYVPQKLYLDTTLPLTVNRFLRLR--PGTKKEDILPALKRVQAGHLIDAPM---------QKLSGGETQRVLLARALLNR 138 (251)
T ss_pred EEeccccccccccChhHHHHHhcc--ccccHHHHHHHHHHcCChHHHhCCh---------hhCCHHHHHHHHHHHHHhcC
Confidence 99999987753 4889988653 1223455666777777776665543 56999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhhcCHHHH
Q 020527 236 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHKGRLYA 314 (325)
Q Consensus 236 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~ 314 (325)
|+++||||||++||+.++..+.+.|+++.++ .|+|||++|||++.+. .||++++|++ ++++.|+++++.+. ..+.
T Consensus 139 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~--~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~~-~~~~ 214 (251)
T PRK09544 139 PQLLVLDEPTQGVDVNGQVALYDLIDQLRRE--LDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSLH-PEFI 214 (251)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhCC-HHHH
Confidence 9999999999999999999999999998652 3789999999999986 4999999965 79999999988653 3344
Q ss_pred HHH
Q 020527 315 KLV 317 (325)
Q Consensus 315 ~~~ 317 (325)
+++
T Consensus 215 ~~~ 217 (251)
T PRK09544 215 SMF 217 (251)
T ss_pred HHh
Confidence 444
No 264
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=8.4e-48 Score=374.66 Aligned_cols=229 Identities=29% Similarity=0.419 Sum_probs=183.9
Q ss_pred cEEEEEEEEECCCCCC-CCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCC----CCeEEECCEeCCCCCHHH
Q 020527 79 HVQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS----DGQIYIDGFPLTDLDIRW 153 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~-~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~----~G~I~i~g~~i~~~~~~~ 153 (325)
.|+++|+++.|..... ..+++||||+|.+||++||+|+|||||||+.++|.|++++. +|+|.|+|+++..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 5999999999975422 36999999999999999999999999999999999999987 899999999887776544
Q ss_pred H----hcceEEEccCCc-Cc-c-ccHHHHHhcCC--CCCC----CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCCh
Q 020527 154 L----REKIGFVGQEPQ-LL-Q-MDIKSNIMYGC--PKDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSG 220 (325)
Q Consensus 154 ~----r~~i~~v~Q~~~-l~-~-~tv~enl~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSg 220 (325)
+ .+.|+|+||+|. .+ + +||.+.|.-.. .... ..++..+.++.+++.+-... ...+++|||
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~-------~~yPheLSG 157 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR-------DRYPHQLSG 157 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh-------ccCCcccCc
Confidence 3 267999999984 34 4 67777764321 1111 12223334444444332221 123478999
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEE
Q 020527 221 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIE 299 (325)
Q Consensus 221 Gq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~ 299 (325)
||||||.||+||+.+|++||+||||++||+.++.+|+++|+++.++ .|.++|+||||++.+.. ||||+||++|++++
T Consensus 158 G~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e--~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 158 GMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRE--LGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred hHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHH--cCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999874 69999999999999875 99999999999999
Q ss_pred EcChHHHhhcC-HHHHHH
Q 020527 300 VGNHAELLHKG-RLYAKL 316 (325)
Q Consensus 300 ~g~~~~l~~~~-~~~~~~ 316 (325)
.|++++++++. +-|.+.
T Consensus 236 ~G~~~~i~~~p~hpYT~~ 253 (539)
T COG1123 236 TGPTEEILSNPQHPYTRG 253 (539)
T ss_pred ecCHHHHHhccCCcccHH
Confidence 99999999763 345443
No 265
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=3.8e-47 Score=345.76 Aligned_cols=209 Identities=23% Similarity=0.371 Sum_probs=172.9
Q ss_pred EEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 020527 81 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 160 (325)
Q Consensus 81 ~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~ 160 (325)
+++||++. .+|+|+||+|++||+++|+||||||||||+++|+|++++ +|+|.++|+++...+...+++.++|
T Consensus 2 ~~~~l~~~-------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~ 73 (248)
T PRK03695 2 QLNDVAVS-------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAY 73 (248)
T ss_pred cccccchh-------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEE
Confidence 56788774 179999999999999999999999999999999999964 9999999999877666666778999
Q ss_pred EccCCcCc-cccHHHHHhcCCCCCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC-
Q 020527 161 VGQEPQLL-QMDIKSNIMYGCPKDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR- 234 (325)
Q Consensus 161 v~Q~~~l~-~~tv~enl~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~- 234 (325)
+||++.++ ..|+++|+.++...... .+.+.++++..++.+.+++. ...||||||||++|||||+.
T Consensus 74 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~~qrv~la~al~~~ 144 (248)
T PRK03695 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRS---------VNQLSGGEWQRVRLAAVVLQV 144 (248)
T ss_pred ecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCC---------cccCCHHHHHHHHHHHHHhcc
Confidence 99998665 68999999875321111 12233444445544433332 25799999999999999997
Q ss_pred ------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHh
Q 020527 235 ------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELL 307 (325)
Q Consensus 235 ------~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~ 307 (325)
+|++|||||||++||+.++..+.++|+++++ +|.|||++||+++.+. .||++++|++|++++.|+++++.
T Consensus 145 ~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~---~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 145 WPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ---QGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVL 221 (248)
T ss_pred ccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 6799999999999999999999999999864 3789999999999875 59999999999999999998886
Q ss_pred hc
Q 020527 308 HK 309 (325)
Q Consensus 308 ~~ 309 (325)
..
T Consensus 222 ~~ 223 (248)
T PRK03695 222 TP 223 (248)
T ss_pred Cc
Confidence 53
No 266
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-47 Score=354.89 Aligned_cols=219 Identities=29% Similarity=0.479 Sum_probs=176.5
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC-----CCCCeEEECCEeCCCC--CH
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTDL--DI 151 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~-----~~~G~I~i~g~~i~~~--~~ 151 (325)
.|+++||+++|+++ .+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++... +.
T Consensus 45 ~l~i~nl~~~~~~~---~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~ 121 (305)
T PRK14264 45 KLSVEDLDVYYGDD---HALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNL 121 (305)
T ss_pred eEEEEEEEEEeCCe---eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccH
Confidence 59999999999753 59999999999999999999999999999999999986 6899999999988542 34
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCCC-------------CC-----HHHHHHHHHHcCHHHHHHhCCCCccccc
Q 020527 152 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD-------------VK-----NEDIEWAAKQAYVHEFILSLPCGYETLV 213 (325)
Q Consensus 152 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~-------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (325)
..+++.++|+||++.+|+.||+||+.++.... .. .+.+..+++.+++.+.+.. ....
T Consensus 122 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~ 196 (305)
T PRK14264 122 VELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVND-----RLDD 196 (305)
T ss_pred HHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhH-----HhcC
Confidence 45678899999999988889999998752110 00 1112223333333211110 0111
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEE-EE
Q 020527 214 DDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRI-VV 291 (325)
Q Consensus 214 ~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v-~~ 291 (325)
...+|||||||||+|||||+++|+||||||||++||+.++..+.+.|+++++ ++|+|++||+++.+.. ||++ ++
T Consensus 197 ~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~----~~tiiivtH~~~~i~~~~d~i~~~ 272 (305)
T PRK14264 197 NALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE----EYTVVVVTHNMQQAARISDQTAVF 272 (305)
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc----CCEEEEEEcCHHHHHHhcCEEEEE
Confidence 2367999999999999999999999999999999999999999999999864 3699999999999865 9997 57
Q ss_pred EeCCEEEEEcChHHHhhc
Q 020527 292 IDDGRIIEVGNHAELLHK 309 (325)
Q Consensus 292 l~~G~i~~~g~~~~l~~~ 309 (325)
|++|++++.|+++++++.
T Consensus 273 l~~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 273 LTGGELVEYDDTDKIFEN 290 (305)
T ss_pred ecCCEEEEeCCHHHHHhC
Confidence 899999999999988754
No 267
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=5.1e-47 Score=345.39 Aligned_cols=219 Identities=23% Similarity=0.291 Sum_probs=171.6
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcC--CCCCCCeEEECCEeCCCCCHHHHhc
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWLRE 156 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl--~~~~~G~I~i~g~~i~~~~~~~~r~ 156 (325)
.|+++||+++|+++ .+|+|+||+|++||+++|+|+||||||||+++|+|+ ++|++|+|+++|.++...+....++
T Consensus 7 ~l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 7 ILEIKNLHASVNEN---EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred eEEEEeEEEEeCCE---EeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 48999999999743 599999999999999999999999999999999998 6899999999999987765544443
Q ss_pred -ceEEEccCCcCcc-ccHHHHHhcCCCCC-----CCHHHHHHHHHHcCHHHHHHhCCCC-cccccCCC-CCChHHHHHHH
Q 020527 157 -KIGFVGQEPQLLQ-MDIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLPCG-YETLVDDD-LLSGGQKQRIA 227 (325)
Q Consensus 157 -~i~~v~Q~~~l~~-~tv~enl~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~LSgGq~QRv~ 227 (325)
.++|+||++.+++ .|+.+|+.++.... .......+.. ..+.++++.+... ........ .||||||||++
T Consensus 84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~ 161 (252)
T CHL00131 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFL--EIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNE 161 (252)
T ss_pred eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHH--HHHHHHHHHcCCchhhhccccccCCCHHHHHHHH
Confidence 5899999998885 68999987542110 0000000000 1122233332221 00111123 49999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh--cCEEEEEeCCEEEEEcChHH
Q 020527 228 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIVVIDDGRIIEVGNHAE 305 (325)
Q Consensus 228 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~--~d~v~~l~~G~i~~~g~~~~ 305 (325)
|||||+.+|+++||||||++||+.++..+.+.|+++.+ +|+|||++|||++.+.. ||++++|++|++++.|+++.
T Consensus 162 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 238 (252)
T CHL00131 162 ILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMT---SENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAEL 238 (252)
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999999999999999999864 37899999999998864 89999999999999999873
No 268
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-47 Score=347.27 Aligned_cols=219 Identities=27% Similarity=0.472 Sum_probs=175.8
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECC------EeCCCCCHH
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG------FPLTDLDIR 152 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g------~~i~~~~~~ 152 (325)
.|.++|++++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++...+..
T Consensus 10 ~i~~~~~~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 10 VFNISRLYLYINDK---AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred heeeeeEEEecCCc---eeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 49999999999753 599999999999999999999999999999999999999997776665 455444555
Q ss_pred HHhcceEEEccCCcCcc-ccHHHHHhcCCCC-C-CCHHH----HHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527 153 WLREKIGFVGQEPQLLQ-MDIKSNIMYGCPK-D-VKNED----IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 225 (325)
Q Consensus 153 ~~r~~i~~v~Q~~~l~~-~tv~enl~~~~~~-~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR 225 (325)
.+++.++|+||++.+|+ .|++||+.++... . ...+. +..+++..++...+.. ........||+|||||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~LS~G~~qr 161 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYD-----RLNSPASQLSGGQQQR 161 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchh-----hhcCCcccCCHHHHHH
Confidence 67888999999999885 6999999875211 1 11111 2233333333211100 0011235799999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChH
Q 020527 226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA 304 (325)
Q Consensus 226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~ 304 (325)
++|||||+.+|+++||||||++||+.++..+.+.|.++.+ +.|||++||+++.+. .||++++|++|++++.|+++
T Consensus 162 l~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~----~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~ 237 (257)
T PRK14246 162 LTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN----EIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSN 237 (257)
T ss_pred HHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc----CcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999999998852 579999999999985 59999999999999999999
Q ss_pred HHhhc
Q 020527 305 ELLHK 309 (325)
Q Consensus 305 ~l~~~ 309 (325)
++.+.
T Consensus 238 ~~~~~ 242 (257)
T PRK14246 238 EIFTS 242 (257)
T ss_pred HHHhC
Confidence 98765
No 269
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=2.3e-47 Score=344.79 Aligned_cols=195 Identities=29% Similarity=0.458 Sum_probs=157.5
Q ss_pred CCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEc-cCCcCc-cccH
Q 020527 95 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG-QEPQLL-QMDI 172 (325)
Q Consensus 95 ~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~-Q~~~l~-~~tv 172 (325)
+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++|+| |++.++ ..|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 3699999999999999999999999999999999999999999999999886442 234567899998 556666 5899
Q ss_pred HHHHhcCCC-CCCCHH----HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCC
Q 020527 173 KSNIMYGCP-KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSA 247 (325)
Q Consensus 173 ~enl~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~ 247 (325)
+||+.+... .....+ .+...++..++.+..+.. ...||||||||++|||||+.+|+++||||||++
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~---------~~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 183 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTP---------VRQLSLGQRMRAEIAAALLHEPEILFLDEPTIG 183 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCC---------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 999865321 111111 122333333443333222 257999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEc
Q 020527 248 LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 301 (325)
Q Consensus 248 LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g 301 (325)
||+.+++.+.+.|.+++++ .+.|||++||+++.+.. ||++++|++|++++.|
T Consensus 184 LD~~~~~~l~~~l~~~~~~--~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 184 LDVVAQENIRNFLKEYNRE--RGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCHHHHHHHHHHHHHHHhc--CCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999998653 47899999999998865 9999999999998754
No 270
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.5e-47 Score=335.49 Aligned_cols=197 Identities=22% Similarity=0.332 Sum_probs=166.6
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 159 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~ 159 (325)
++++|++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ...+++++
T Consensus 2 l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~ 77 (204)
T PRK13538 2 LEARNLACERDER---ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLL 77 (204)
T ss_pred eEEEEEEEEECCE---EEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheE
Confidence 7899999999753 5999999999999999999999999999999999999999999999999886543 34567899
Q ss_pred EEccCCcCc-cccHHHHHhcCCCC-C-CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 020527 160 FVGQEPQLL-QMDIKSNIMYGCPK-D-VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 236 (325)
Q Consensus 160 ~v~Q~~~l~-~~tv~enl~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p 236 (325)
|++|++.++ ..|++||+.++... . ...+.+..+++..++.+..++.+ ..||||||||++|||||+++|
T Consensus 78 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS~G~~qrl~la~al~~~p 148 (204)
T PRK13538 78 YLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPV---------RQLSAGQQRRVALARLWLTRA 148 (204)
T ss_pred EeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCCh---------hhcCHHHHHHHHHHHHHhcCC
Confidence 999999887 47999999765211 1 22344556677777765554433 579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhc-CEEEEE
Q 020527 237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVI 292 (325)
Q Consensus 237 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~-d~v~~l 292 (325)
+++||||||++||+.++..+.++|+++++ ++.|+|++|||++.+..| +|++++
T Consensus 149 ~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 149 PLWILDEPFTAIDKQGVARLEALLAQHAE---QGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHH---CCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999999999999864 377999999999999775 677766
No 271
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=8.5e-47 Score=333.04 Aligned_cols=196 Identities=23% Similarity=0.360 Sum_probs=165.7
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 159 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~ 159 (325)
|+++|+++.|+++ .+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.... ..++++++
T Consensus 1 l~i~~l~~~~~~~---~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (201)
T cd03231 1 LEADELTCERDGR---ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLL 76 (201)
T ss_pred CEEEEEEEEeCCc---eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheE
Confidence 4789999999753 5999999999999999999999999999999999999999999999999875432 45678899
Q ss_pred EEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCE
Q 020527 160 FVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI 238 (325)
Q Consensus 160 ~v~Q~~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~l 238 (325)
|+||++.++ ..|++||+.+... ....+.+.++++..++.+..++. ..+||||||||++|||||+.+|++
T Consensus 77 ~~~q~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 77 YLGHAPGIKTTLSVLENLRFWHA-DHSDEQVEEALARVGLNGFEDRP---------VAQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred EeccccccCCCcCHHHHHHhhcc-cccHHHHHHHHHHcCChhhhcCc---------hhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999876 5899999987532 22344555666666665544332 257999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEE
Q 020527 239 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVI 292 (325)
Q Consensus 239 lllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l 292 (325)
+||||||++||+.+++.+.+.|+++.+ +|.|+|++|||..... .|++++++
T Consensus 147 lllDEPt~~LD~~~~~~l~~~l~~~~~---~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 147 WILDEPTTALDKAGVARFAEAMAGHCA---RGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCchhhhhccceeEec
Confidence 999999999999999999999998864 3789999999988765 58999877
No 272
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-47 Score=385.45 Aligned_cols=220 Identities=25% Similarity=0.417 Sum_probs=176.7
Q ss_pred cEEEEEEEEECCCCC-CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCC----------
Q 020527 79 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT---------- 147 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~-~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~---------- 147 (325)
.|+++|++++|+... ..++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 599999999996321 236999999999999999999999999999999999999999999999997552
Q ss_pred CCCHH---HHh-cceEEEccCC--cCcc-ccHHHHHhcCCCC--CCCH----HHHHHHHHHcCHH---HHHHhCCCCccc
Q 020527 148 DLDIR---WLR-EKIGFVGQEP--QLLQ-MDIKSNIMYGCPK--DVKN----EDIEWAAKQAYVH---EFILSLPCGYET 211 (325)
Q Consensus 148 ~~~~~---~~r-~~i~~v~Q~~--~l~~-~tv~enl~~~~~~--~~~~----~~~~~~~~~~~~~---~~~~~~~~~~~~ 211 (325)
..+.. .+| ++||||||+| .+++ .||+||+.++... .... +++.++++.+++. ..+++
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~------- 164 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSR------- 164 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhC-------
Confidence 11222 233 5799999998 5664 7999999875211 1111 2233334444442 12222
Q ss_pred ccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEE
Q 020527 212 LVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIV 290 (325)
Q Consensus 212 ~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~ 290 (325)
...+|||||||||+|||||+.+|++|||||||++||+.++.++.+++++++++ .|+|||+||||++.+.. ||||+
T Consensus 165 --~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~--~g~tvi~itHdl~~~~~~adri~ 240 (623)
T PRK10261 165 --YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKE--MSMGVIFITHDMGVVAEIADRVL 240 (623)
T ss_pred --CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHh--cCCEEEEEcCCHHHHHHhCCEEE
Confidence 23679999999999999999999999999999999999999999999999753 48899999999999865 99999
Q ss_pred EEeCCEEEEEcChHHHhhc
Q 020527 291 VIDDGRIIEVGNHAELLHK 309 (325)
Q Consensus 291 ~l~~G~i~~~g~~~~l~~~ 309 (325)
+|++|++++.|++++++..
T Consensus 241 vl~~G~i~~~g~~~~~~~~ 259 (623)
T PRK10261 241 VMYQGEAVETGSVEQIFHA 259 (623)
T ss_pred EeeCCeecccCCHHHhhcC
Confidence 9999999999999988753
No 273
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9e-47 Score=333.19 Aligned_cols=193 Identities=24% Similarity=0.389 Sum_probs=161.4
Q ss_pred cEEEEEEEEECCCC-CCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC---CCCCeEEECCEeCCCCCHHHH
Q 020527 79 HVQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE---PSDGQIYIDGFPLTDLDIRWL 154 (325)
Q Consensus 79 ~i~~~~v~~~y~~~-~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~---~~~G~I~i~g~~i~~~~~~~~ 154 (325)
.+.++||+|.|+.. .++.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.... ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 47899999999753 23579999999999999999999999999999999999999 89999999999987543 345
Q ss_pred hcceEEEccCCcCcc-ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 020527 155 REKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 233 (325)
Q Consensus 155 r~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 233 (325)
++.++|+||++.+++ .||+||+.++... . .+. ....||||||||++|||||+
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------~-----------~~~---------~~~~LS~Ge~qrl~laral~ 134 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRC-------K-----------GNE---------FVRGISGGERKRVSIAEALV 134 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhh-------c-----------ccc---------chhhCCHHHHHHHHHHHHHh
Confidence 778999999988875 7999999874210 0 111 12469999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEe-cCchHHH-hcCEEEEEeCCEEEEEc
Q 020527 234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIA-HRLSTIK-AVDRIVVIDDGRIIEVG 301 (325)
Q Consensus 234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vt-H~~~~~~-~~d~v~~l~~G~i~~~g 301 (325)
.+|+++||||||++||+.+++.+.+.++++.++ .+.|+|+++ |+.+.+. .||++++|++|++++.|
T Consensus 135 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~--~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 135 SRASVLCWDNSTRGLDSSTALEILKCIRTMADV--LKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred hCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh--CCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 999999999999999999999999999998653 255666654 5567765 59999999999998754
No 274
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=5e-47 Score=334.18 Aligned_cols=196 Identities=22% Similarity=0.380 Sum_probs=161.6
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 159 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~ 159 (325)
|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.. ....++++++
T Consensus 2 l~~~~l~~~~~~~---~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~ 77 (200)
T PRK13540 2 LDVIELDFDYHDQ---PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLC 77 (200)
T ss_pred EEEEEEEEEeCCe---eEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheE
Confidence 7899999999753 59999999999999999999999999999999999999999999999998764 3345678899
Q ss_pred EEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCE
Q 020527 160 FVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI 238 (325)
Q Consensus 160 ~v~Q~~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~l 238 (325)
|+||++.++ ..||+||+.++.........+.+.++..++.+..++ ...+|||||+||++||||++.+|++
T Consensus 78 ~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~~rv~laral~~~p~~ 148 (200)
T PRK13540 78 FVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDY---------PCGLLSSGQKRQVALLRLWMSKAKL 148 (200)
T ss_pred EeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhC---------ChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 999999886 589999998752111112233334444433332221 2257999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEE
Q 020527 239 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVV 291 (325)
Q Consensus 239 lllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~ 291 (325)
|||||||++||+.+++.+.+.|+++++ .|.|+|++||+.+.+..||.-.+
T Consensus 149 lilDEP~~~LD~~~~~~l~~~l~~~~~---~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 149 WLLDEPLVALDELSLLTIITKIQEHRA---KGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred EEEeCCCcccCHHHHHHHHHHHHHHHH---cCCEEEEEeCCchhccccchhhc
Confidence 999999999999999999999999854 37899999999999988987543
No 275
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=5.9e-47 Score=332.35 Aligned_cols=184 Identities=34% Similarity=0.559 Sum_probs=161.0
Q ss_pred cEEEEEEEEECCCC---CCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCC--CCCCCeEEECCEeCCCCCHHH
Q 020527 79 HVQFVNISFHYPSR---PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY--EPSDGQIYIDGFPLTDLDIRW 153 (325)
Q Consensus 79 ~i~~~~v~~~y~~~---~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~--~~~~G~I~i~g~~i~~~~~~~ 153 (325)
.|+++||+++|++. ...++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|+++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 38999999999741 0146999999999999999999999999999999999999 9999999999998763 25
Q ss_pred HhcceEEEccCCcCcc-ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 020527 154 LREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 232 (325)
Q Consensus 154 ~r~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 232 (325)
+++.++|+||++.+|+ .|++||+.++.. . . .||||||||++|||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~-------~-------~-------------------~LS~G~~qrv~laral 126 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAK-------L-------R-------------------GLSGGERKRVSIALEL 126 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHH-------h-------c-------------------cCCHHHHHHHHHHHHH
Confidence 5778999999998875 799999975310 0 0 4999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCch-HHH-hcCEEEEEeCCEEEEEc
Q 020527 233 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS-TIK-AVDRIVVIDDGRIIEVG 301 (325)
Q Consensus 233 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~-~~~-~~d~v~~l~~G~i~~~g 301 (325)
+.+|+++||||||++||+.+++.+.+.|+++.+ +|+|+|++||+++ .+. .||++++|++|++++.|
T Consensus 127 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~---~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD---TGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999864 3789999999996 564 59999999999997653
No 276
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=5.9e-47 Score=329.05 Aligned_cols=173 Identities=30% Similarity=0.558 Sum_probs=155.9
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCH-HHHhcc
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREK 157 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~-~~~r~~ 157 (325)
.|+++|++++| +++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ...+++
T Consensus 4 ~l~~~~l~~~~-------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 4 VLEVRGLSVKG-------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred EEEEeccEEEe-------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 48999999988 7999999999999999999999999999999999999999999999999877653 345778
Q ss_pred eEEEccCC---cCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 020527 158 IGFVGQEP---QLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 233 (325)
Q Consensus 158 i~~v~Q~~---~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 233 (325)
++|+||++ .++ ..|++||+.++.. ||||||||++|||||+
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------LS~G~~qrl~la~al~ 120 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVVLARWLA 120 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHhh------------------------------------cCHHHHHHHHHHHHHc
Confidence 99999995 344 5799999976410 7999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEE
Q 020527 234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 297 (325)
Q Consensus 234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i 297 (325)
.+|+++||||||++||+.+++.+.+.++++++ ++.|+|++||+++.+.. ||++++|++|++
T Consensus 121 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 121 RDPRVLILDEPTRGVDVGAKAEIYRLIRELAD---AGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999999864 37899999999998865 999999999974
No 277
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3e-47 Score=314.86 Aligned_cols=216 Identities=30% Similarity=0.478 Sum_probs=184.0
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCC--CCC----HH
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT--DLD----IR 152 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~--~~~----~~ 152 (325)
.|+++|+++.|+.. ++|.||+|+.++||.+.++||||+|||||+|.+.-+.-|.+|+..|-|.... ..+ ..
T Consensus 2 sirv~~in~~yg~~---q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~ 78 (242)
T COG4161 2 SIQLNGINCFYGAH---QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred ceEEcccccccccc---hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHH
Confidence 48999999999864 6999999999999999999999999999999999999999999999886542 221 34
Q ss_pred HHhcceEEEccCCcCc-cccHHHHHhcC------CCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527 153 WLREKIGFVGQEPQLL-QMDIKSNIMYG------CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 225 (325)
Q Consensus 153 ~~r~~i~~v~Q~~~l~-~~tv~enl~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR 225 (325)
++|+.+|+|||+.+++ .+||.||+.-. ........+..+.+++..+.++.+++| -.|||||+||
T Consensus 79 ~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~p---------lhlsggqqqr 149 (242)
T COG4161 79 DLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYP---------LHLSGGQQQR 149 (242)
T ss_pred HHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCc---------eecccchhhh
Confidence 6899999999999998 58999998643 111111223445566666677777776 3599999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChH
Q 020527 226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 304 (325)
Q Consensus 226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~ 304 (325)
|+|||||+.+|++|++||||++|||+-..++.++++++.. .|.|-++|||..+.++. +.||++|++|+|++.|+..
T Consensus 150 vaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~---tgitqvivthev~va~k~as~vvyme~g~ive~g~a~ 226 (242)
T COG4161 150 VAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAE---TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred HHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHh---cCceEEEEEeehhHHHhhhhheEeeecCeeEeecchh
Confidence 9999999999999999999999999999999999999975 59999999999999976 9999999999999999988
Q ss_pred HHhhc
Q 020527 305 ELLHK 309 (325)
Q Consensus 305 ~l~~~ 309 (325)
.+-+.
T Consensus 227 ~ft~p 231 (242)
T COG4161 227 CFTEP 231 (242)
T ss_pred hccCc
Confidence 76544
No 278
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=8.2e-47 Score=378.14 Aligned_cols=220 Identities=30% Similarity=0.449 Sum_probs=176.9
Q ss_pred cEEEEEEEEECCCC-CCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC-----CCCeEEECCEeCCCCCHH
Q 020527 79 HVQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDLDIR 152 (325)
Q Consensus 79 ~i~~~~v~~~y~~~-~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~-----~~G~I~i~g~~i~~~~~~ 152 (325)
+|+++|++++|++. ..+++|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999631 123699999999999999999999999999999999999987 799999999998765533
Q ss_pred H---Hh-cceEEEccCCc--Cc-cccHHHHHhcCC--CCCCC----HHHHHHHHHHcCHHH---HHHhCCCCcccccCCC
Q 020527 153 W---LR-EKIGFVGQEPQ--LL-QMDIKSNIMYGC--PKDVK----NEDIEWAAKQAYVHE---FILSLPCGYETLVDDD 216 (325)
Q Consensus 153 ~---~r-~~i~~v~Q~~~--l~-~~tv~enl~~~~--~~~~~----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 216 (325)
. +| +++||+||++. ++ ..|+.+|+.+.. ..... .+++.++++.+++.+ ..++ ...
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---------~~~ 155 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTD---------YPH 155 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhh---------CCc
Confidence 2 33 57999999985 44 368999986421 00111 122333444444422 1222 236
Q ss_pred CCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCC
Q 020527 217 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG 295 (325)
Q Consensus 217 ~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G 295 (325)
+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++++++ .|+|||+||||++.+.. ||||++|++|
T Consensus 156 ~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tvi~vtHd~~~~~~~~dri~~l~~G 233 (529)
T PRK15134 156 QLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQE--LNMGLLFITHNLSIVRKLADRVAVMQNG 233 (529)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHh--cCCeEEEEcCcHHHHHHhcCEEEEEECC
Confidence 79999999999999999999999999999999999999999999998653 37899999999999864 9999999999
Q ss_pred EEEEEcChHHHhhc
Q 020527 296 RIIEVGNHAELLHK 309 (325)
Q Consensus 296 ~i~~~g~~~~l~~~ 309 (325)
++++.|++++++..
T Consensus 234 ~i~~~g~~~~~~~~ 247 (529)
T PRK15134 234 RCVEQNRAATLFSA 247 (529)
T ss_pred EEEEeCCHHHHhhC
Confidence 99999999988653
No 279
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=5e-47 Score=341.30 Aligned_cols=193 Identities=32% Similarity=0.466 Sum_probs=160.1
Q ss_pred eeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCcc-ccHHHHH
Q 020527 98 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNI 176 (325)
Q Consensus 98 L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~tv~enl 176 (325)
|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+||++.+|+ .|++||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 579999999999999999999999999999999999999999999999865432 2489999998885 7999999
Q ss_pred hcCCC---CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCC
Q 020527 177 MYGCP---KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD 249 (325)
Q Consensus 177 ~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD 249 (325)
.++.. ..... +.+.+.++..++.+..++.+ .+||||||||++|||||+.+|++|||||||++||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD 146 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRP---------GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALD 146 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCCh---------hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCC
Confidence 76421 11111 12334455555544443332 5799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHH
Q 020527 250 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL 306 (325)
Q Consensus 250 ~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l 306 (325)
+.+++.+.+.|.++.++ .|+|||++|||++.+.. ||++++|++|++++.|++.++
T Consensus 147 ~~~~~~l~~~l~~~~~~--~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 147 ALTRGNLQEELMQIWEE--HRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 99999999999998653 47899999999998865 999999999999998877555
No 280
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-47 Score=376.54 Aligned_cols=215 Identities=26% Similarity=0.382 Sum_probs=175.8
Q ss_pred EEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCH-HHHhcceEE
Q 020527 82 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREKIGF 160 (325)
Q Consensus 82 ~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~-~~~r~~i~~ 160 (325)
++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+++.++|
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 3689999974 359999999999999999999999999999999999999999999999999865543 345678999
Q ss_pred EccCCcCc-cccHHHHHhcCCCC--C--CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 020527 161 VGQEPQLL-QMDIKSNIMYGCPK--D--VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 235 (325)
Q Consensus 161 v~Q~~~l~-~~tv~enl~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~ 235 (325)
+||++.++ ..||+||+.++... . ...... ...+.++++.+...........+|||||||||+|||||+.+
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~ 152 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKM-----YRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYN 152 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHH-----HHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhC
Confidence 99999876 57999999875321 1 011111 11233445554332222223467999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHh
Q 020527 236 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 307 (325)
Q Consensus 236 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 307 (325)
|++|||||||++||+.++..+.+.|+++++ .|+|||++|||++.+.. ||++++|++|++++.|+++++.
T Consensus 153 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 153 AKIVIMDEPTSSLTEKEVNHLFTIIRKLKE---RGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 999999999999999999999999999864 47899999999999865 9999999999999999988763
No 281
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=8.3e-46 Score=406.28 Aligned_cols=295 Identities=22% Similarity=0.342 Sum_probs=238.9
Q ss_pred eehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCc----c--c---------c
Q 020527 4 LLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQ----F--L---------S 68 (325)
Q Consensus 4 ~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~----~--~---------~ 68 (325)
.+++|.+..|.+|++.+++++.++..+..|+..+...+..+.++.++++|+.++++.++... . . .
T Consensus 487 ~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~ 566 (1560)
T PTZ00243 487 VFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCSTVQDMEEYWREQREHST 566 (1560)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccchhhccccccccc
Confidence 45778888999999999999999999999999999999999999999999999997654100 0 0 0
Q ss_pred --c------c--------cc---------------------------ccCCcccEEEEEEEEECCC--------------
Q 020527 69 --E------G--------VK---------------------------LQRLMGHVQFVNISFHYPS-------------- 91 (325)
Q Consensus 69 --~------~--------~~---------------------------~~~~~~~i~~~~v~~~y~~-------------- 91 (325)
. + .+ .......+.++|+++.++.
T Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (1560)
T PTZ00243 567 ACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPSSASRHIVEGGTGGG 646 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccchhhcccccccccccccccccccccccccccccccccccccccccc
Confidence 0 0 00 0000013556666654320
Q ss_pred -----------------------CCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCC
Q 020527 92 -----------------------RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD 148 (325)
Q Consensus 92 -----------------------~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~ 148 (325)
..++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+.
T Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~------ 720 (1560)
T PTZ00243 647 HEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE------ 720 (1560)
T ss_pred ccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC------
Confidence 012358999999999999999999999999999999999999999999862
Q ss_pred CCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHH
Q 020527 149 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRI 226 (325)
Q Consensus 149 ~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~LSgGq~QRv 226 (325)
++|+|+||+|.+|++|++||+.++.. ...+...++.+.+++++.++.+|.|+.+.++ +.+|||||||||
T Consensus 721 -------~~i~yv~Q~~~l~~~Tv~enI~~~~~--~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRv 791 (1560)
T PTZ00243 721 -------RSIAYVPQQAWIMNATVRGNILFFDE--EDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARV 791 (1560)
T ss_pred -------CeEEEEeCCCccCCCcHHHHHHcCCh--hhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHH
Confidence 46999999999999999999998732 2344566677778888999999888887665 468999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHH-HHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHH
Q 020527 227 AIARAILRDPAILLLDEATSALDSESEHYVKGVL-HALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAE 305 (325)
Q Consensus 227 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l-~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~ 305 (325)
+|||||+.+|+++||||||++||+.+.+.+++.+ .... .|+|+|++||+++.+..||+|++|++|++++.|++++
T Consensus 792 aLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~----~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~ 867 (1560)
T PTZ00243 792 SLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGAL----AGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSAD 867 (1560)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhh----CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999988887643 3222 3789999999999998899999999999999999999
Q ss_pred HhhcCHHHHHHHH
Q 020527 306 LLHKGRLYAKLVK 318 (325)
Q Consensus 306 l~~~~~~~~~~~~ 318 (325)
++... .|.++..
T Consensus 868 l~~~~-~~~~~~~ 879 (1560)
T PTZ00243 868 FMRTS-LYATLAA 879 (1560)
T ss_pred HHhCh-HHHHHHH
Confidence 98653 4666554
No 282
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-46 Score=374.40 Aligned_cols=214 Identities=28% Similarity=0.413 Sum_probs=175.5
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCH-HHHhcc
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREK 157 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~-~~~r~~ 157 (325)
.|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..++++
T Consensus 4 ~l~~~~l~~~~~~~---~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPGV---KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECCE---EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 48999999999753 59999999999999999999999999999999999999999999999999865443 345778
Q ss_pred eEEEccCCcCcc-ccHHHHHhcCCCCC----CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 020527 158 IGFVGQEPQLLQ-MDIKSNIMYGCPKD----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 232 (325)
Q Consensus 158 i~~v~Q~~~l~~-~tv~enl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 232 (325)
|+|+||++.+++ .||+||+.++.... ...... ...+.++++.+...........+||||||||++|||||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral 155 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLL-----NYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKAL 155 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHH-----HHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHH
Confidence 999999998874 79999998753211 111111 11233455554433222233467999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcCh
Q 020527 233 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 303 (325)
Q Consensus 233 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~ 303 (325)
+.+|++|||||||++||+.++..+.+.|+++++ +|+|||++|||++.+.. ||++++|++|+++..+++
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 156 ARNARVIAFDEPTSSLSAREIEQLFRVIRELRA---EGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 999999999999999999999999999999864 47899999999999865 999999999999877654
No 283
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=7.3e-47 Score=327.88 Aligned_cols=178 Identities=37% Similarity=0.571 Sum_probs=155.4
Q ss_pred EEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 020527 81 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 160 (325)
Q Consensus 81 ~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~ 160 (325)
+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 77 (180)
T cd03214 1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAY 77 (180)
T ss_pred CeeEEEEEECC---eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhH
Confidence 47899999975 359999999999999999999999999999999999999999999999999987776667778999
Q ss_pred EccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEE
Q 020527 161 VGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILL 240 (325)
Q Consensus 161 v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~lll 240 (325)
+|| +++..++.+.+++.+ ..||||||||++|||||+.+|+++|
T Consensus 78 ~~q----------------------------~l~~~gl~~~~~~~~---------~~LS~G~~qrl~laral~~~p~lll 120 (180)
T cd03214 78 VPQ----------------------------ALELLGLAHLADRPF---------NELSGGERQRVLLARALAQEPPILL 120 (180)
T ss_pred HHH----------------------------HHHHcCCHhHhcCCc---------ccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 998 333444444443322 5699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEE
Q 020527 241 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEV 300 (325)
Q Consensus 241 lDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~ 300 (325)
|||||++||+.++..+.+.+.+++++ .+.|+|++||+++.+. .||++++|++|++++.
T Consensus 121 lDEP~~~LD~~~~~~~~~~l~~~~~~--~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~ 179 (180)
T cd03214 121 LDEPTSHLDIAHQIELLELLRRLARE--RGKTVVMVLHDLNLAARYADRVILLKDGRIVAQ 179 (180)
T ss_pred EeCCccCCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEec
Confidence 99999999999999999999998642 2689999999999985 5999999999999764
No 284
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=6.7e-47 Score=378.75 Aligned_cols=219 Identities=30% Similarity=0.500 Sum_probs=177.7
Q ss_pred cEEEEEEEEECCCC--------CCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCC
Q 020527 79 HVQFVNISFHYPSR--------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 150 (325)
Q Consensus 79 ~i~~~~v~~~y~~~--------~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~ 150 (325)
.|+++|++++|+.. ..+.+|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|+++|+++...+
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccc
Confidence 48999999999521 02469999999999999999999999999999999999995 8999999999986554
Q ss_pred HH---HHhcceEEEccCC--cCc-cccHHHHHhcCCCCC---CC----HHHHHHHHHHcCHH-HHHHhCCCCcccccCCC
Q 020527 151 IR---WLREKIGFVGQEP--QLL-QMDIKSNIMYGCPKD---VK----NEDIEWAAKQAYVH-EFILSLPCGYETLVDDD 216 (325)
Q Consensus 151 ~~---~~r~~i~~v~Q~~--~l~-~~tv~enl~~~~~~~---~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 216 (325)
.. .++++++|+||++ .++ ..||+||+.++.... .. .+.+.++++..++. +..++ ...
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~ 424 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHR---------YPA 424 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhc---------CCc
Confidence 32 2467899999997 356 479999998742100 11 11223334444442 22222 236
Q ss_pred CCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCC
Q 020527 217 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG 295 (325)
Q Consensus 217 ~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G 295 (325)
+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++++++ .|+|||+||||++.+.. ||++++|++|
T Consensus 425 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tvi~vsHd~~~~~~~~d~i~~l~~G 502 (529)
T PRK15134 425 EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQK--HQLAYLFISHDLHVVRALCHQVIVLRQG 502 (529)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHh--hCCEEEEEeCCHHHHHHhcCeEEEEECC
Confidence 79999999999999999999999999999999999999999999999753 37899999999999865 9999999999
Q ss_pred EEEEEcChHHHhhc
Q 020527 296 RIIEVGNHAELLHK 309 (325)
Q Consensus 296 ~i~~~g~~~~l~~~ 309 (325)
++++.|+++++++.
T Consensus 503 ~i~~~~~~~~~~~~ 516 (529)
T PRK15134 503 EVVEQGDCERVFAA 516 (529)
T ss_pred EEEEEcCHHHHhcC
Confidence 99999999998764
No 285
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=2.1e-46 Score=330.29 Aligned_cols=184 Identities=31% Similarity=0.466 Sum_probs=160.9
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcC--CCCCCCeEEECCEeCCCCCHHHH-hc
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWL-RE 156 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl--~~~~~G~I~i~g~~i~~~~~~~~-r~ 156 (325)
++++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...+.... +.
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (200)
T cd03217 1 LEIKDLHVSVGG---KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARL 77 (200)
T ss_pred CeEEEEEEEeCC---EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhC
Confidence 468999999974 3599999999999999999999999999999999999 58999999999999987665443 45
Q ss_pred ceEEEccCCcCcc-ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 020527 157 KIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 235 (325)
Q Consensus 157 ~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~ 235 (325)
.++|+||++.+++ .++++++ ...+ .+|||||+||++|||||+.+
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~l--------------------------~~~~---------~~LS~G~~qrv~laral~~~ 122 (200)
T cd03217 78 GIFLAFQYPPEIPGVKNADFL--------------------------RYVN---------EGFSGGEKKRNEILQLLLLE 122 (200)
T ss_pred cEEEeecChhhccCccHHHHH--------------------------hhcc---------ccCCHHHHHHHHHHHHHhcC
Confidence 6999999998875 5666665 0111 35999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH--hcCEEEEEeCCEEEEEcChH
Q 020527 236 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK--AVDRIVVIDDGRIIEVGNHA 304 (325)
Q Consensus 236 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~--~~d~v~~l~~G~i~~~g~~~ 304 (325)
|+++||||||++||+.++..+.+.|.++++ +++|+|++||+++.+. .||++++|++|++++.|+.+
T Consensus 123 p~illlDEPt~~LD~~~~~~l~~~L~~~~~---~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~~~ 190 (200)
T cd03217 123 PDLAILDEPDSGLDIDALRLVAEVINKLRE---EGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKE 190 (200)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHH---CCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEccHH
Confidence 999999999999999999999999999864 3789999999999886 69999999999999998443
No 286
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.9e-48 Score=320.65 Aligned_cols=205 Identities=27% Similarity=0.468 Sum_probs=172.3
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 159 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~ 159 (325)
++++++.+.-++ .++|+|+||++.+||+++|+||||||||||+|+++-|.+|++|+++|.|++++.+++..+|++|+
T Consensus 4 le~kq~~y~a~~---a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~Vs 80 (223)
T COG4619 4 LELKQVGYLAGD---AKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVS 80 (223)
T ss_pred hHHHHHHhhcCC---CeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHH
Confidence 456666544433 47999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCcCccccHHHHHhcCCC---CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 020527 160 FVGQEPQLLQMDIKSNIMYGCP---KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 236 (325)
Q Consensus 160 ~v~Q~~~l~~~tv~enl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p 236 (325)
|+.|.|.||..||+||+.|+.. .+.+.......+.++++.+..-.. ...+||||||||++|+|-|.--|
T Consensus 81 Y~~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k--------~it~lSGGE~QriAliR~Lq~~P 152 (223)
T COG4619 81 YCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTK--------NITELSGGEKQRIALIRNLQFMP 152 (223)
T ss_pred HHHcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcc--------hhhhccchHHHHHHHHHHhhcCC
Confidence 9999999999999999998631 222233333344444443322111 12579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHH-HhcCEEEEEeCCEE
Q 020527 237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRI 297 (325)
Q Consensus 237 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~-~~~d~v~~l~~G~i 297 (325)
+|||||||||+||+.+++.+.+++.++.++ +..++++||||.+.. +.+|+++.+..|++
T Consensus 153 ~ILLLDE~TsALD~~nkr~ie~mi~~~v~~--q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 153 KILLLDEITSALDESNKRNIEEMIHRYVRE--QNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred ceEEecCchhhcChhhHHHHHHHHHHHhhh--hceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 999999999999999999999999999763 688999999999985 67999999999976
No 287
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.7e-47 Score=330.72 Aligned_cols=183 Identities=25% Similarity=0.472 Sum_probs=159.7
Q ss_pred cEEEEEEEEECCCCC-CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCC--CCCCCeEEECCEeCCCCCHHHHh
Q 020527 79 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY--EPSDGQIYIDGFPLTDLDIRWLR 155 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~-~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~--~~~~G~I~i~g~~i~~~~~~~~r 155 (325)
.|+++|+++.|++.. .+++|+++||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|+++. ..++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 489999999996411 136999999999999999999999999999999999986 489999999999874 3456
Q ss_pred cceEEEccCCcCcc-ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 020527 156 EKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 234 (325)
Q Consensus 156 ~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~ 234 (325)
+.++|++|++.+++ .|++||+.++. . .+ +|||||+||++||||++.
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~-------~----~~----------------------~LSgGe~qrv~la~al~~ 125 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSA-------L----LR----------------------GLSVEQRKRLTIGVELAA 125 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHH-------H----Hh----------------------cCCHHHhHHHHHHHHHhc
Confidence 78999999998875 79999998631 0 00 499999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchH-H-HhcCEEEEEeC-CEEEEEc
Q 020527 235 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST-I-KAVDRIVVIDD-GRIIEVG 301 (325)
Q Consensus 235 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~-~-~~~d~v~~l~~-G~i~~~g 301 (325)
+|+++|+||||++||+.++..+.+.++++++ .|+|+|++||+++. + ..||++++|++ |++++.|
T Consensus 126 ~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~---~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 126 KPSILFLDEPTSGLDSQAAYNIVRFLKKLAD---SGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHH---cCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 9999999999999999999999999999864 37899999999984 5 56999999999 9998754
No 288
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=2.3e-46 Score=340.20 Aligned_cols=221 Identities=25% Similarity=0.313 Sum_probs=168.2
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCC--CCCCCeEEECCEeCCCCCHHHH-hc
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY--EPSDGQIYIDGFPLTDLDIRWL-RE 156 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~--~~~~G~I~i~g~~i~~~~~~~~-r~ 156 (325)
|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++...+.... ++
T Consensus 2 i~~~nl~~~~~~~---~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (248)
T PRK09580 2 LSIKDLHVSVEDK---AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE 78 (248)
T ss_pred eEEEEEEEEeCCe---eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence 7899999999753 5999999999999999999999999999999999995 6999999999998876655443 35
Q ss_pred ceEEEccCCcCcc-ccHHHHHhcCCC--CCC-CHHHHHHHHHHcCHHHHHHhCCC--CcccccCCCCCChHHHHHHHHHH
Q 020527 157 KIGFVGQEPQLLQ-MDIKSNIMYGCP--KDV-KNEDIEWAAKQAYVHEFILSLPC--GYETLVDDDLLSGGQKQRIAIAR 230 (325)
Q Consensus 157 ~i~~v~Q~~~l~~-~tv~enl~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~LSgGq~QRv~iAr 230 (325)
.++|++|++.+++ .|..+++.+... ... .............+.+.++.+.. ++.+......||||||||++|||
T Consensus 79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~lar 158 (248)
T PRK09580 79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQ 158 (248)
T ss_pred ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHH
Confidence 7999999988764 465555432110 000 00000000000112223333222 11111111369999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh--cCEEEEEeCCEEEEEcChHHH
Q 020527 231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIVVIDDGRIIEVGNHAEL 306 (325)
Q Consensus 231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~--~d~v~~l~~G~i~~~g~~~~l 306 (325)
|++.+|++|||||||++||+.+++.+.+.|+++++ .++|||++|||++.+.. ||++++|++|++++.|+++.+
T Consensus 159 al~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~---~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 159 MAVLEPELCILDESDSGLDIDALKIVADGVNSLRD---GKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 233 (248)
T ss_pred HHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence 99999999999999999999999999999999864 37899999999999865 899999999999999988754
No 289
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-46 Score=363.68 Aligned_cols=219 Identities=31% Similarity=0.426 Sum_probs=180.6
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHH-Hhcc
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREK 157 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~-~r~~ 157 (325)
.++++|++|+|++ .++|++|||++.+||++||+|.||||||||+|+|+|.|+|++|+|+++|+++.-.++.+ ....
T Consensus 8 ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 8 LLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred eeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 4899999999986 47999999999999999999999999999999999999999999999999988666654 4567
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 020527 158 IGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 236 (325)
Q Consensus 158 i~~v~Q~~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p 236 (325)
|+.|+|+..|+ ++||.||+.+|..+.....-+++..-.....++++++...........+||.||||.|+||||+..++
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~a 164 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDA 164 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCC
Confidence 99999999998 68999999988543221000111111112334455544332222223679999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcCh
Q 020527 237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 303 (325)
Q Consensus 237 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~ 303 (325)
+|+|||||||+|+....+.++++++++++ +|.++|+|||+++++.. ||||.||++|+.+...+.
T Consensus 165 rllIlDEPTaaLt~~E~~~Lf~~ir~Lk~---~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~ 229 (500)
T COG1129 165 RVLILDEPTAALTVKETERLFDLIRRLKA---QGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPT 229 (500)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeeccc
Confidence 99999999999999999999999999985 59999999999999865 999999999999988773
No 290
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.8e-46 Score=373.28 Aligned_cols=217 Identities=26% Similarity=0.432 Sum_probs=177.4
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC--CCCeEEECCEeCCCCCHHH-Hhc
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP--SDGQIYIDGFPLTDLDIRW-LRE 156 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~--~~G~I~i~g~~i~~~~~~~-~r~ 156 (325)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++...+... .++
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 789999999964 3599999999999999999999999999999999999987 7999999999987665443 456
Q ss_pred ceEEEccCCcCc-cccHHHHHhcCCCCC-----CCHHHHHHHHHHcCHHHHHHhCCCCccc-ccCCCCCChHHHHHHHHH
Q 020527 157 KIGFVGQEPQLL-QMDIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLPCGYET-LVDDDLLSGGQKQRIAIA 229 (325)
Q Consensus 157 ~i~~v~Q~~~l~-~~tv~enl~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~LSgGq~QRv~iA 229 (325)
.++|+||++.++ ..|++||+.++.... ...+.. ...+.++++.+...... .....+|||||||||+||
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA 153 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAM-----YLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIA 153 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHH-----HHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHH
Confidence 799999999877 579999998753211 111111 11233455554432111 122467999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHh
Q 020527 230 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 307 (325)
Q Consensus 230 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 307 (325)
|||+.+|++|||||||++||+.++..+.+.|+++++ +|+|||+||||++.+.. ||+|++|++|+++..++++++.
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (500)
T TIGR02633 154 KALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA---HGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMS 229 (500)
T ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccCC
Confidence 999999999999999999999999999999999964 47899999999999865 9999999999999998877653
No 291
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=1.5e-46 Score=337.99 Aligned_cols=200 Identities=31% Similarity=0.439 Sum_probs=161.6
Q ss_pred ceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC----CCCeEEECCEeCCCCCHHHHhcceEEEccCCc-Cc--c
Q 020527 97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP----SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQ-LL--Q 169 (325)
Q Consensus 97 iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~----~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~-l~--~ 169 (325)
+++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... ...++.++|+||++. .| .
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 57999999999999999999999999999999999999 899999999988643 222357999999985 34 3
Q ss_pred ccHHHHHhcCCCC-CC-C---HHHHHHHHHHcCHH---HHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEE
Q 020527 170 MDIKSNIMYGCPK-DV-K---NEDIEWAAKQAYVH---EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLL 241 (325)
Q Consensus 170 ~tv~enl~~~~~~-~~-~---~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llll 241 (325)
.|+++|+.+.... .. . .+.+.+.++..++. ...++ ....|||||||||+|||||+.+|++|||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~~LS~G~~qrv~laral~~~p~vllL 149 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKK---------YPFQLSGGMLQRVMIALALLLEPPFLIA 149 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhC---------ChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 6999998653110 01 1 11233334443332 11221 2357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhc
Q 020527 242 DEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 309 (325)
Q Consensus 242 DEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 309 (325)
||||++||+.++..+.+.|++++++ .|+|||++||+++.+.. ||++++|++|++++.|++++++..
T Consensus 150 DEPt~~LD~~~~~~l~~~l~~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 216 (230)
T TIGR02770 150 DEPTTDLDVVNQARVLKLLRELRQL--FGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN 216 (230)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999998652 37899999999999864 999999999999999999998754
No 292
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.4e-47 Score=323.18 Aligned_cols=210 Identities=30% Similarity=0.453 Sum_probs=173.3
Q ss_pred cccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhc
Q 020527 77 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 156 (325)
Q Consensus 77 ~~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~ 156 (325)
|.++.+++++.+|++++ ..+|+|+|++|.+||.++++|||||||||||++++|+.+|+.|+|.+||+++..-..
T Consensus 1 M~~l~~~~~sl~y~g~~-~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga----- 74 (259)
T COG4525 1 MCMLNVSHLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA----- 74 (259)
T ss_pred CceeehhheEEecCCcc-hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc-----
Confidence 34588999999998763 569999999999999999999999999999999999999999999999999875432
Q ss_pred ceEEEccCCcCc-cccHHHHHhcCCCCC-CCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 020527 157 KIGFVGQEPQLL-QMDIKSNIMYGCPKD-VKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 230 (325)
Q Consensus 157 ~i~~v~Q~~~l~-~~tv~enl~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 230 (325)
.-|.|||++.|+ ..|+.||++||.... ..+ +...+.+..+++.++-++. .-+|||||||||.|||
T Consensus 75 ergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~---------i~qLSGGmrQRvGiAR 145 (259)
T COG4525 75 ERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKY---------IWQLSGGMRQRVGIAR 145 (259)
T ss_pred cceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccc---------eEeecchHHHHHHHHH
Confidence 248999999998 589999999985321 111 1222333344444332222 2479999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEe--CCEEEEEcCh
Q 020527 231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID--DGRIIEVGNH 303 (325)
Q Consensus 231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~--~G~i~~~g~~ 303 (325)
||+.+|++|+||||+++||.-+++++.++|.++-++ .|+.+++||||++++-. ++|+++|. .|+|++.-++
T Consensus 146 ALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~--tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 146 ALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQE--TGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred HhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHH--hCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCC
Confidence 999999999999999999999999999999887654 58999999999999865 99999998 5789876544
No 293
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.3e-46 Score=375.95 Aligned_cols=215 Identities=26% Similarity=0.425 Sum_probs=173.4
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCC--CCCCCeEEEC---------------
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY--EPSDGQIYID--------------- 142 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~--~~~~G~I~i~--------------- 142 (325)
|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|++ +|++|+|.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 478999999964 36999999999999999999999999999999999997 7999999997
Q ss_pred --------CEeCC-------CCC---HHHHhcceEEEccC-CcCc-cccHHHHHhcCCC-CCCC----HHHHHHHHHHcC
Q 020527 143 --------GFPLT-------DLD---IRWLREKIGFVGQE-PQLL-QMDIKSNIMYGCP-KDVK----NEDIEWAAKQAY 197 (325)
Q Consensus 143 --------g~~i~-------~~~---~~~~r~~i~~v~Q~-~~l~-~~tv~enl~~~~~-~~~~----~~~~~~~~~~~~ 197 (325)
|.++. ... ...+|+.++|+||+ +.+| ..|++||+.++.. .... .+++.++++.++
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 157 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ 157 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 22221 111 12346789999998 5676 4799999986421 1111 123344455555
Q ss_pred HHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEe
Q 020527 198 VHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIA 277 (325)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vt 277 (325)
+.+..++.+ .+|||||||||+|||||+.+|++|||||||++||+.++..+.++|+++.++ .|+|||+||
T Consensus 158 l~~~~~~~~---------~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tviivt 226 (520)
T TIGR03269 158 LSHRITHIA---------RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKA--SGISMVLTS 226 (520)
T ss_pred ChhhhhcCc---------ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHh--cCcEEEEEe
Confidence 544444333 679999999999999999999999999999999999999999999998653 478999999
Q ss_pred cCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527 278 HRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 308 (325)
Q Consensus 278 H~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 308 (325)
||++.+.. ||++++|++|+++..|++++++.
T Consensus 227 Hd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 258 (520)
T TIGR03269 227 HWPEVIEDLSDKAIWLENGEIKEEGTPDEVVA 258 (520)
T ss_pred CCHHHHHHhcCEEEEEeCCEEeeecCHHHHHH
Confidence 99999864 99999999999999999888754
No 294
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.7e-46 Score=375.13 Aligned_cols=223 Identities=25% Similarity=0.423 Sum_probs=174.1
Q ss_pred cEEEEEEEEECCC--CCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEEC-CEe---CCCCC--
Q 020527 79 HVQFVNISFHYPS--RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID-GFP---LTDLD-- 150 (325)
Q Consensus 79 ~i~~~~v~~~y~~--~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~-g~~---i~~~~-- 150 (325)
.|+++|++++|++ ....++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++ |.+ +...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 5999999999953 112369999999999999999999999999999999999999999999996 643 22222
Q ss_pred -HHHHhcceEEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCc-----ccccCCCCCChHHH
Q 020527 151 -IRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGY-----ETLVDDDLLSGGQK 223 (325)
Q Consensus 151 -~~~~r~~i~~v~Q~~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~LSgGq~ 223 (325)
...++++++|+||++.++ ..||+||+.++.......... ...+.++++.+.... .......+||||||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~ 433 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELA-----RMKAVITLKMVGFDEEKAEEILDKYPDELSEGER 433 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHH-----HHHHHHHHHhCCCCCccchhhhhCChhhCCHHHH
Confidence 123466799999999887 479999997632111111110 011223344333211 01122367999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcC
Q 020527 224 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 302 (325)
Q Consensus 224 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~ 302 (325)
|||+|||||+.+|++|||||||++||+.+++.+.+.|++++++ .|.|||+||||++.+.. |||+++|++|++++.|+
T Consensus 434 qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~ 511 (520)
T TIGR03269 434 HRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREE--MEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGD 511 (520)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH--cCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999998653 47899999999999865 99999999999999999
Q ss_pred hHHHhh
Q 020527 303 HAELLH 308 (325)
Q Consensus 303 ~~~l~~ 308 (325)
+++++.
T Consensus 512 ~~~~~~ 517 (520)
T TIGR03269 512 PEEIVE 517 (520)
T ss_pred HHHHHh
Confidence 887753
No 295
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.6e-47 Score=376.08 Aligned_cols=226 Identities=24% Similarity=0.409 Sum_probs=177.6
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC-CCCCeEEECCEeCCCCCH-HHHhc
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-PSDGQIYIDGFPLTDLDI-RWLRE 156 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~-~~~G~I~i~g~~i~~~~~-~~~r~ 156 (325)
.|+++|++++|+.....++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...+. ...++
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 4899999999952112369999999999999999999999999999999999998 599999999998864433 34567
Q ss_pred ceEEEccCC---cCc-cccHHHHHhcCCCCCCCH-HHHHHHHHHcCHHHHHHhCCCC-cccccCCCCCChHHHHHHHHHH
Q 020527 157 KIGFVGQEP---QLL-QMDIKSNIMYGCPKDVKN-EDIEWAAKQAYVHEFILSLPCG-YETLVDDDLLSGGQKQRIAIAR 230 (325)
Q Consensus 157 ~i~~v~Q~~---~l~-~~tv~enl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~LSgGq~QRv~iAr 230 (325)
.++|+||++ .++ ..|+.||+.++....... ...........+.++++.+... ........+|||||||||+|||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~ 418 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAK 418 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHH
Confidence 899999996 355 579999998752100000 0000001112234455555432 1222334689999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHh
Q 020527 231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 307 (325)
Q Consensus 231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 307 (325)
||+.+|++|||||||++||+.+++.+.++|.++++ +|+|||++|||++.+.. ||++++|++|+++..|+++++.
T Consensus 419 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 493 (506)
T PRK13549 419 CLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQ---QGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNLT 493 (506)
T ss_pred HHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHH---CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccccCC
Confidence 99999999999999999999999999999999875 38899999999999865 9999999999999999888763
No 296
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.2e-47 Score=334.36 Aligned_cols=215 Identities=23% Similarity=0.480 Sum_probs=181.9
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.+++++|+|+|+++ .+++|+||++++|+++|++|||||||||.+|+|+|+++|++|+|.|+|.+++. ..+.+|
T Consensus 2 ~L~ie~vtK~Fg~k---~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rI 74 (300)
T COG4152 2 ALEIEGVTKSFGDK---KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRI 74 (300)
T ss_pred ceEEecchhccCce---eeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhc
Confidence 48999999999864 69999999999999999999999999999999999999999999999998753 346789
Q ss_pred EEEccCCcCc-cccHHHHHhcCC-CCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 020527 159 GFVGQEPQLL-QMDIKSNIMYGC-PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 236 (325)
Q Consensus 159 ~~v~Q~~~l~-~~tv~enl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p 236 (325)
||+|.+.-|+ .+||.|.+.|-. .......++ +..+..|++++...........+||.|.+|++.+..|++++|
T Consensus 75 GyLPEERGLy~k~tv~dql~yla~LkGm~~~e~-----~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHeP 149 (300)
T COG4152 75 GYLPEERGLYPKMTVEDQLKYLAELKGMPKAEI-----QKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEP 149 (300)
T ss_pred ccChhhhccCccCcHHHHHHHHHHhcCCcHHHH-----HHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCC
Confidence 9999999999 589999997631 111222222 123445666655433222223579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527 237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 308 (325)
Q Consensus 237 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 308 (325)
+++|||||||||||.+.+.+.+.+.++++ +|+|||++||.|+.++. ||++++|++|+.|-+|+.+++.+
T Consensus 150 eLlILDEPFSGLDPVN~elLk~~I~~lk~---~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~ 219 (300)
T COG4152 150 ELLILDEPFSGLDPVNVELLKDAIFELKE---EGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRR 219 (300)
T ss_pred CEEEecCCccCCChhhHHHHHHHHHHHHh---cCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHH
Confidence 99999999999999999999999999975 59999999999999976 99999999999999999998865
No 297
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.5e-46 Score=332.18 Aligned_cols=198 Identities=24% Similarity=0.320 Sum_probs=163.5
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.|+++|++++|+++ .+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ..++.+
T Consensus 11 ~l~~~~l~~~~~~~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i 84 (214)
T PRK13543 11 LLAAHALAFSRNEE---PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFM 84 (214)
T ss_pred eEEEeeEEEecCCc---eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhce
Confidence 48999999999753 599999999999999999999999999999999999999999999999988642 235679
Q ss_pred EEEccCCcCcc-ccHHHHHhcCCC--CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 020527 159 GFVGQEPQLLQ-MDIKSNIMYGCP--KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 235 (325)
Q Consensus 159 ~~v~Q~~~l~~-~tv~enl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~ 235 (325)
+|++|++.+++ .|++||+.+... .....+...+.++..++.+..+.. ...||||||||++||||++.+
T Consensus 85 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~~qrv~laral~~~ 155 (214)
T PRK13543 85 AYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTL---------VRQLSAGQKKRLALARLWLSP 155 (214)
T ss_pred EEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCC---------hhhCCHHHHHHHHHHHHHhcC
Confidence 99999998875 699999976421 111122233444444444333222 257999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeC
Q 020527 236 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD 294 (325)
Q Consensus 236 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~ 294 (325)
|+++||||||++||+.+++.+.+.++++.+ +|.|+|++|||++.+.. ||++++++.
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 156 APLWLLDEPYANLDLEGITLVNRMISAHLR---GGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEecChhhhhhhcceEEEEee
Confidence 999999999999999999999999999864 37899999999999865 999999864
No 298
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=4.5e-46 Score=318.96 Aligned_cols=164 Identities=36% Similarity=0.537 Sum_probs=147.8
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 159 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~ 159 (325)
|+++|++++|+++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++++
T Consensus 1 i~~~~~~~~~~~~--~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 67 (166)
T cd03223 1 IELENLSLATPDG--RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLL 67 (166)
T ss_pred CEEEEEEEEcCCC--CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEE
Confidence 4689999999642 36999999999999999999999999999999999999999999999873 5799
Q ss_pred EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEE
Q 020527 160 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 239 (325)
Q Consensus 160 ~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ll 239 (325)
|++|++.+++.|++||+.++ . ..+||||||||++|||||+.+|+++
T Consensus 68 ~~~q~~~~~~~tv~~nl~~~-------------------------~---------~~~LS~G~~~rv~laral~~~p~~l 113 (166)
T cd03223 68 FLPQRPYLPLGTLREQLIYP-------------------------W---------DDVLSGGEQQRLAFARLLLHKPKFV 113 (166)
T ss_pred EECCCCccccccHHHHhhcc-------------------------C---------CCCCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999988888999999763 0 1469999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCE
Q 020527 240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR 296 (325)
Q Consensus 240 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~ 296 (325)
||||||++||+.+++.+.+.++++ +.|+|++|||++....||++++|+++-
T Consensus 114 llDEPt~~LD~~~~~~l~~~l~~~------~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 114 FLDEATSALDEESEDRLYQLLKEL------GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred EEECCccccCHHHHHHHHHHHHHh------CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 999999999999999999999876 469999999998777799999998763
No 299
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=7.6e-46 Score=316.63 Aligned_cols=160 Identities=36% Similarity=0.559 Sum_probs=147.1
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHH-HHhcce
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR-WLREKI 158 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~-~~r~~i 158 (325)
|+++|++++|+++ ++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..++.+
T Consensus 1 l~~~~l~~~~~~~---~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i 77 (163)
T cd03216 1 LELRGITKRFGGV---KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGI 77 (163)
T ss_pred CEEEEEEEEECCe---EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCe
Confidence 4789999999753 599999999999999999999999999999999999999999999999998766543 456789
Q ss_pred EEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCE
Q 020527 159 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI 238 (325)
Q Consensus 159 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~l 238 (325)
+|+|| ||||||||++||||++.+|++
T Consensus 78 ~~~~q------------------------------------------------------LS~G~~qrl~laral~~~p~i 103 (163)
T cd03216 78 AMVYQ------------------------------------------------------LSVGERQMVEIARALARNARL 103 (163)
T ss_pred EEEEe------------------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 99998 799999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEE
Q 020527 239 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIE 299 (325)
Q Consensus 239 lllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~ 299 (325)
+||||||++||+.+++.+.+.++++++ ++.|+|++|||++.+.. ||++++|++|++++
T Consensus 104 lllDEP~~~LD~~~~~~l~~~l~~~~~---~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 104 LILDEPTAALTPAEVERLFKVIRRLRA---QGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999864 37899999999998865 99999999999875
No 300
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-46 Score=374.37 Aligned_cols=221 Identities=17% Similarity=0.319 Sum_probs=174.1
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCH-HHHhcc
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREK 157 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~-~~~r~~ 157 (325)
.|+++|+++.|. .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+. ..++++
T Consensus 265 ~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 339 (510)
T PRK09700 265 VFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339 (510)
T ss_pred EEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCC
Confidence 499999998762 38999999999999999999999999999999999999999999999998865443 345678
Q ss_pred eEEEccCC---cCc-cccHHHHHhcCCCCC---CCH-HHH-HHHHHHcCHHHHHHhCCCC-cccccCCCCCChHHHHHHH
Q 020527 158 IGFVGQEP---QLL-QMDIKSNIMYGCPKD---VKN-EDI-EWAAKQAYVHEFILSLPCG-YETLVDDDLLSGGQKQRIA 227 (325)
Q Consensus 158 i~~v~Q~~---~l~-~~tv~enl~~~~~~~---~~~-~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~LSgGq~QRv~ 227 (325)
++|+||++ .++ ..||+||+.++.... ... ... ........+.++++.+... ........+|||||||||+
T Consensus 340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~ 419 (510)
T PRK09700 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVL 419 (510)
T ss_pred cEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHH
Confidence 99999984 466 579999998752100 000 000 0000111234455554432 2223334689999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHH
Q 020527 228 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL 306 (325)
Q Consensus 228 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l 306 (325)
|||||+.+|++|||||||++||+.+++.+.++|+++++ +|.|||++|||++.+.. |||+++|++|+++..++..+.
T Consensus 420 lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 496 (510)
T PRK09700 420 ISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLAD---DGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTNRDD 496 (510)
T ss_pred HHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHH---CCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecCccc
Confidence 99999999999999999999999999999999999864 37899999999998865 999999999999988876443
Q ss_pred h
Q 020527 307 L 307 (325)
Q Consensus 307 ~ 307 (325)
+
T Consensus 497 ~ 497 (510)
T PRK09700 497 M 497 (510)
T ss_pred C
Confidence 3
No 301
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=5.9e-46 Score=329.12 Aligned_cols=197 Identities=23% Similarity=0.338 Sum_probs=165.1
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.|+++|++++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .. .++++
T Consensus 2 ~l~~~~l~~~~~~~---~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~-~~~~~ 75 (207)
T PRK13539 2 MLEGEDLACVRGGR---VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--PD-VAEAC 75 (207)
T ss_pred EEEEEeEEEEECCe---EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--hh-hHhhc
Confidence 48999999999743 59999999999999999999999999999999999999999999999988642 22 67789
Q ss_pred EEEccCCcCc-cccHHHHHhcCCC-CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 020527 159 GFVGQEPQLL-QMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 236 (325)
Q Consensus 159 ~~v~Q~~~l~-~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p 236 (325)
+|++|++.++ ..|++||+.+... .....+.+.++++..++.++.+..+ .+||||||||++||||++.+|
T Consensus 76 ~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~la~al~~~p 146 (207)
T PRK13539 76 HYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPF---------GYLSAGQKRRVALARLLVSNR 146 (207)
T ss_pred EEecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCCh---------hhcCHHHHHHHHHHHHHhcCC
Confidence 9999988776 6899999976321 1122334556666666655433222 579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeC
Q 020527 237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 294 (325)
Q Consensus 237 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~ 294 (325)
+++||||||++||+.++..+.+.|+++.+ +|+|+|++||+++.+.. |+++.++.
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 147 PIWILDEPTAALDAAAVALFAELIRAHLA---QGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCchhhcc-CcEEeecC
Confidence 99999999999999999999999998864 37899999999999877 99988754
No 302
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=6.7e-46 Score=332.32 Aligned_cols=202 Identities=28% Similarity=0.416 Sum_probs=158.3
Q ss_pred EEEEEEEEECCCC---C-CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEEC--CE--eCCCCCH
Q 020527 80 VQFVNISFHYPSR---P-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID--GF--PLTDLDI 151 (325)
Q Consensus 80 i~~~~v~~~y~~~---~-~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~--g~--~i~~~~~ 151 (325)
|+++|++++|+.+ . ...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |. ++...+.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 7899999999631 0 1369999999999999999999999999999999999999999999998 43 5544443
Q ss_pred HH---H-hcceEEEccCCcCc-cccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChH
Q 020527 152 RW---L-REKIGFVGQEPQLL-QMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGG 221 (325)
Q Consensus 152 ~~---~-r~~i~~v~Q~~~l~-~~tv~enl~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgG 221 (325)
.. . +++++|+||++.++ ..|++||+.+... ..... +.+.++++..++.+.. ......+||||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------~~~~~~~LS~G 153 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERL--------WHLPPATFSGG 153 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh--------hhCCcccCCHH
Confidence 32 2 45799999999887 5799999976321 11111 1222233333332211 11223679999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEE
Q 020527 222 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVI 292 (325)
Q Consensus 222 q~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l 292 (325)
||||++|||||+.+|+++||||||++||+.+++.+.+.|+++++ +|+|+|++||+++.+. .||+++.+
T Consensus 154 ~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 154 EQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKA---RGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHhcceeEec
Confidence 99999999999999999999999999999999999999999864 3789999999999886 59999876
No 303
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=9.7e-46 Score=343.45 Aligned_cols=225 Identities=31% Similarity=0.488 Sum_probs=191.1
Q ss_pred cEEEEEEEEECCCCC--------CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCC
Q 020527 79 HVQFVNISFHYPSRP--------TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 150 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~--------~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~ 150 (325)
.++.++|.+.|+-+. ...+++++||++++||.+||||+||||||||-++|.+|+++. |+|.|+|+++..++
T Consensus 276 ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~ 354 (534)
T COG4172 276 LLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLS 354 (534)
T ss_pred eEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccC
Confidence 589999999986432 246899999999999999999999999999999999999876 99999999998877
Q ss_pred HHH---HhcceEEEccCCc--Cc-cccHHHHHhcCCCC---C----CCHHHHHHHHHHcCHHHH-HHhCCCCcccccCCC
Q 020527 151 IRW---LREKIGFVGQEPQ--LL-QMDIKSNIMYGCPK---D----VKNEDIEWAAKQAYVHEF-ILSLPCGYETLVDDD 216 (325)
Q Consensus 151 ~~~---~r~~i~~v~Q~~~--l~-~~tv~enl~~~~~~---~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 216 (325)
.++ +|+++..|||||+ |- .+||.+-|.-|..- . ..++++.++++.++++.. ..++| +
T Consensus 355 ~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYP---------h 425 (534)
T COG4172 355 RKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYP---------H 425 (534)
T ss_pred hhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCC---------c
Confidence 654 5789999999996 33 58999999876421 1 123445666777766542 44444 6
Q ss_pred CCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCC
Q 020527 217 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG 295 (325)
Q Consensus 217 ~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G 295 (325)
++|||||||++||||++.+|++++||||||+||..-+.++.++|+++.++ .|.+-++||||+..++. ||+|+||++|
T Consensus 426 EFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k--~~LsYLFISHDL~VvrAl~~~viVm~~G 503 (534)
T COG4172 426 EFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQK--HGLSYLFISHDLAVVRALCHRVIVMRDG 503 (534)
T ss_pred ccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHH--hCCeEEEEeccHHHHHHhhceEEEEeCC
Confidence 79999999999999999999999999999999999999999999999874 68999999999999975 9999999999
Q ss_pred EEEEEcChHHHhhc-CHHHHH
Q 020527 296 RIIEVGNHAELLHK-GRLYAK 315 (325)
Q Consensus 296 ~i~~~g~~~~l~~~-~~~~~~ 315 (325)
+|+|.|+.++++++ ...|.+
T Consensus 504 kiVE~G~~~~if~~P~~~YT~ 524 (534)
T COG4172 504 KIVEQGPTEAVFANPQHEYTR 524 (534)
T ss_pred EEeeeCCHHHHhcCCCcHHHH
Confidence 99999999999986 345644
No 304
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4e-46 Score=333.97 Aligned_cols=197 Identities=34% Similarity=0.535 Sum_probs=170.8
Q ss_pred cEEEEEEEEECCCCC------CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHH
Q 020527 79 HVQFVNISFHYPSRP------TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR 152 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~------~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~ 152 (325)
.++++|+++.|+.+. ...+++||||+|++||+++|||+||||||||-|+|+||++|++|+|+|+|+++..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 589999999996432 147999999999999999999999999999999999999999999999999976543
Q ss_pred HHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHH-HHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 020527 153 WLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQKQRIAIARA 231 (325)
Q Consensus 153 ~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 231 (325)
.....+++.+.++.+++.+ ++.+.| ++|||||+||++||||
T Consensus 82 -----------------------------~~~~~~~v~elL~~Vgl~~~~~~ryP---------helSGGQrQRi~IARA 123 (268)
T COG4608 82 -----------------------------KEERRERVLELLEKVGLPEEFLYRYP---------HELSGGQRQRIGIARA 123 (268)
T ss_pred -----------------------------hhHHHHHHHHHHHHhCCCHHHhhcCC---------cccCchhhhhHHHHHH
Confidence 0112345667777777644 666666 6799999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhc-
Q 020527 232 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK- 309 (325)
Q Consensus 232 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~- 309 (325)
|+.+|+++++|||+|+||...+.+++++|.+++++ .|.|.++||||++.++. ||||.+|..|+|++.|+.++++.+
T Consensus 124 Lal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~--~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p 201 (268)
T COG4608 124 LALNPKLIVADEPVSALDVSVQAQILNLLKDLQEE--LGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNP 201 (268)
T ss_pred HhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHH--hCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCC
Confidence 99999999999999999999999999999999875 58999999999999987 999999999999999999999875
Q ss_pred CHHHHHHH
Q 020527 310 GRLYAKLV 317 (325)
Q Consensus 310 ~~~~~~~~ 317 (325)
.+-|.+.+
T Consensus 202 ~HpYTk~L 209 (268)
T COG4608 202 LHPYTKAL 209 (268)
T ss_pred CCHHHHHH
Confidence 44565543
No 305
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=7.9e-46 Score=326.01 Aligned_cols=195 Identities=24% Similarity=0.338 Sum_probs=161.1
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 159 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~ 159 (325)
|+++|++++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..+++.++
T Consensus 1 l~~~~l~~~~~~~---~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (198)
T TIGR01189 1 LAARNLACSRGER---MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNIL 76 (198)
T ss_pred CEEEEEEEEECCE---EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheE
Confidence 4789999999753 5999999999999999999999999999999999999999999999999886553 34567899
Q ss_pred EEccCCcCcc-ccHHHHHhcCCCC-CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC
Q 020527 160 FVGQEPQLLQ-MDIKSNIMYGCPK-DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 237 (325)
Q Consensus 160 ~v~Q~~~l~~-~tv~enl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ 237 (325)
|+||++.+++ .|+.||+.+.... ......+.++++..++.+..++.+ .+||||||||++||||++.+|+
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~al~~~p~ 147 (198)
T TIGR01189 77 YLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPA---------AQLSAGQQRRLALARLWLSRAP 147 (198)
T ss_pred EeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCCh---------hhcCHHHHHHHHHHHHHhcCCC
Confidence 9999988874 8999999764211 111234556666667766554433 5799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEE
Q 020527 238 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVV 291 (325)
Q Consensus 238 llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~ 291 (325)
++||||||++||+.++..+.+.|.++++ +|.|+|++||+...+ .|++++.
T Consensus 148 llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~sH~~~~~-~~~~~~~ 197 (198)
T TIGR01189 148 LWILDEPTTALDKAGVALLAGLLRAHLA---RGGIVLLTTHQDLGL-VEARELR 197 (198)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHh---CCCEEEEEEcccccc-cceEEee
Confidence 9999999999999999999999999864 378999999998432 3466553
No 306
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=5.6e-46 Score=353.62 Aligned_cols=217 Identities=27% Similarity=0.444 Sum_probs=184.0
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCH-HHHhcc
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREK 157 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~-~~~r~~ 157 (325)
.+++++++|.|++ ..++++|||+|++||+.||+|+||||||||+++|.|+|+|++|+|+++|+++.-.++ +..+..
T Consensus 4 ~l~~~~itK~f~~---~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 4 ALEMRGITKRFPG---VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred eEEEeccEEEcCC---EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence 4899999999984 479999999999999999999999999999999999999999999999999875555 456788
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 020527 158 IGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 236 (325)
Q Consensus 158 i~~v~Q~~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p 236 (325)
||+|+|++.|+ ..||.|||.+|...... ..+........+.++.++++...+......+||-||||||.|-+||+++|
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~-~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a 159 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSKG-GLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGA 159 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCccccc-cccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCC
Confidence 99999999998 58999999998532110 01111122233456666666555555555789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcC
Q 020527 237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 302 (325)
Q Consensus 237 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~ 302 (325)
++||||||||-|-|...+++++.++.+++ .|+|||+|||.++++.. |||+-||++|+++...+
T Consensus 160 ~iLILDEPTaVLTP~E~~~lf~~l~~l~~---~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 160 RLLILDEPTAVLTPQEADELFEILRRLAA---EGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 99999999999999999999999999986 49999999999999965 99999999999876655
No 307
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.3e-45 Score=367.21 Aligned_cols=224 Identities=22% Similarity=0.379 Sum_probs=175.3
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC-CCCeEEECCEeCCCCCH-HHHhc
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYIDGFPLTDLDI-RWLRE 156 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~-~~G~I~i~g~~i~~~~~-~~~r~ 156 (325)
.|+++|++++|++.....+|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++...+. ..+++
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 49999999999421123599999999999999999999999999999999999985 89999999999864433 45577
Q ss_pred ceEEEccCC---cCc-cccHHHHHhcCCCCCCCH-HHHHHHHHHcCHHHHHHhCCCCc-ccccCCCCCChHHHHHHHHHH
Q 020527 157 KIGFVGQEP---QLL-QMDIKSNIMYGCPKDVKN-EDIEWAAKQAYVHEFILSLPCGY-ETLVDDDLLSGGQKQRIAIAR 230 (325)
Q Consensus 157 ~i~~v~Q~~---~l~-~~tv~enl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~LSgGq~QRv~iAr 230 (325)
+++|+||++ .++ ..|+++|+.++....... ...........+.++++++.... ........|||||||||+|||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~ 416 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAK 416 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHH
Confidence 899999996 366 579999998752110000 00000111122344555554321 122334689999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHH
Q 020527 231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAE 305 (325)
Q Consensus 231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~ 305 (325)
||+.+|++|||||||++||+.++..+.++++++++ +|.|||++|||++++.. ||++++|++|+++..++.++
T Consensus 417 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 489 (500)
T TIGR02633 417 MLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQ---EGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHA 489 (500)
T ss_pred HHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHh---CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999975 37899999999999865 99999999999998876554
No 308
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=8.6e-46 Score=323.62 Aligned_cols=176 Identities=31% Similarity=0.478 Sum_probs=145.0
Q ss_pred CCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCC--CCHHHHhcceEEEccCCc--Cccc
Q 020527 95 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD--LDIRWLREKIGFVGQEPQ--LLQM 170 (325)
Q Consensus 95 ~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~--~~~~~~r~~i~~v~Q~~~--l~~~ 170 (325)
+.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .....+++.++|+||++. +|..
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 369999999999999999999999999999999999999999999999998742 123355778999999983 5678
Q ss_pred cHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCC
Q 020527 171 DIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEAT 245 (325)
Q Consensus 171 tv~enl~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPt 245 (325)
|++||+.++.. ..... +.+.++++..++.+..++.+ .+||||||||++|||||+.+|+++||||||
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~laral~~~p~llllDEPt 155 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPT---------HCLSGGEKKRVAIAGAVAMRPDVLLLDEPT 155 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCCh---------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999987421 11111 22344555555555444433 579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchH
Q 020527 246 SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST 282 (325)
Q Consensus 246 s~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~ 282 (325)
++||+.+++.+.+.|+++++ +|+|||++|||+++
T Consensus 156 ~~LD~~~~~~~~~~l~~~~~---~~~tili~sH~~~~ 189 (190)
T TIGR01166 156 AGLDPAGREQMLAILRRLRA---EGMTVVISTHDVDL 189 (190)
T ss_pred ccCCHHHHHHHHHHHHHHHH---cCCEEEEEeecccc
Confidence 99999999999999999864 37899999999875
No 309
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-45 Score=334.34 Aligned_cols=214 Identities=22% Similarity=0.358 Sum_probs=169.7
Q ss_pred cEEEEEEEEECCCC-----------------CCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEE
Q 020527 79 HVQFVNISFHYPSR-----------------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 141 (325)
Q Consensus 79 ~i~~~~v~~~y~~~-----------------~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i 141 (325)
+++++||++.|... ..+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 47888888877431 1245999999999999999999999999999999999999999999999
Q ss_pred CCEeCCCCCHHHHhcceEEEccCCcCc-cccHHHHHhcCCC-CCCCHHHH----HHHHHHcCHHHHHHhCCCCcccccCC
Q 020527 142 DGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCP-KDVKNEDI----EWAAKQAYVHEFILSLPCGYETLVDD 215 (325)
Q Consensus 142 ~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~enl~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (325)
+|. +++++|++.++ ..|+.+|+.++.. .....+.. ..+++..++.+.++. ..
T Consensus 84 ~g~-------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~ 141 (264)
T PRK13546 84 NGE-------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQ---------PV 141 (264)
T ss_pred CCE-------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcC---------Cc
Confidence 984 35677777665 5799999975311 11112222 122333333333322 23
Q ss_pred CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeC
Q 020527 216 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD 294 (325)
Q Consensus 216 ~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~ 294 (325)
.+|||||+||++||||++.+|++|||||||++||+.++..+.+.+.++++ .|+|+|++||+++.+.. ||++++|++
T Consensus 142 ~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~---~g~tiIiisH~~~~i~~~~d~i~~l~~ 218 (264)
T PRK13546 142 KKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKE---QNKTIFFVSHNLGQVRQFCTKIAWIEG 218 (264)
T ss_pred ccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHH---CCCEEEEEcCCHHHHHHHcCEEEEEEC
Confidence 67999999999999999999999999999999999999999999999864 47899999999999865 999999999
Q ss_pred CEEEEEcChHHHhhcCHHHHHHH
Q 020527 295 GRIIEVGNHAELLHKGRLYAKLV 317 (325)
Q Consensus 295 G~i~~~g~~~~l~~~~~~~~~~~ 317 (325)
|++++.|+++++.+....|.+.+
T Consensus 219 G~i~~~g~~~~~~~~~~~~~~~~ 241 (264)
T PRK13546 219 GKLKDYGELDDVLPKYEAFLNDF 241 (264)
T ss_pred CEEEEeCCHHHHHHHhHHHHHHH
Confidence 99999999999887644444433
No 310
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.3e-46 Score=330.70 Aligned_cols=202 Identities=28% Similarity=0.511 Sum_probs=179.9
Q ss_pred ceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCC----HHHHhcceEEEccCCcCc-ccc
Q 020527 97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRWLREKIGFVGQEPQLL-QMD 171 (325)
Q Consensus 97 iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~----~~~~r~~i~~v~Q~~~l~-~~t 171 (325)
.-=+++|+.+.-.++||.|+||||||||+|+|+|+.+|++|+|.+||.-+.+.. ...-+++|||||||..|| .+|
T Consensus 13 ~~l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 13 FALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred eEEEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 345789999886799999999999999999999999999999999998775432 233467899999999999 589
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH
Q 020527 172 IKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 251 (325)
Q Consensus 172 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~ 251 (325)
|+.|+.||.. ........+.....++..+++++| ..|||||||||+|+|||+..|++||+|||.|+||..
T Consensus 93 VrgNL~YG~~-~~~~~~fd~iv~lLGI~hLL~R~P---------~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~ 162 (352)
T COG4148 93 VRGNLRYGMW-KSMRAQFDQLVALLGIEHLLDRYP---------GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLP 162 (352)
T ss_pred Eecchhhhhc-ccchHhHHHHHHHhCcHHHHhhCC---------CccCcchhhHHHHHHHHhcCCCeeeecCchhhcccc
Confidence 9999999964 344566778888899999999998 569999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhcC
Q 020527 252 SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 310 (325)
Q Consensus 252 ~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~ 310 (325)
.+++++-.+++++++ .+.-|++|||.++++.+ ||+|++|++|++.++|..++++...
T Consensus 163 RK~EilpylERL~~e--~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 163 RKREILPYLERLRDE--INIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred hhhHHHHHHHHHHHh--cCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence 999999999999875 57899999999999865 9999999999999999999998643
No 311
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=3.6e-45 Score=327.76 Aligned_cols=196 Identities=26% Similarity=0.448 Sum_probs=158.3
Q ss_pred EEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcC---ccccHHHHHhcC
Q 020527 103 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQL---LQMDIKSNIMYG 179 (325)
Q Consensus 103 l~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l---~~~tv~enl~~~ 179 (325)
|+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. ..+++++|+||++.+ ++.|+.+|+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998753 245789999999876 347999999765
Q ss_pred CCC------CC---CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCH
Q 020527 180 CPK------DV---KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 250 (325)
Q Consensus 180 ~~~------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~ 250 (325)
... .. ..+.+.++++..++.+..+.. ..+||||||||++|||||+.+|+++|+||||++||+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~ 146 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELADRP---------VGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDM 146 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCchhhcCC---------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 210 00 112233344444444333222 257999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhcCHHHHHHH
Q 020527 251 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV 317 (325)
Q Consensus 251 ~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 317 (325)
.+++.+.+.++++++ +|+|+|++|||++.+.. ||+++++ +|+++..|+++++.+++ .+.+.+
T Consensus 147 ~~~~~l~~~l~~~~~---~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~~-~~~~~~ 209 (223)
T TIGR03771 147 PTQELLTELFIELAG---AGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDPA-PWMTTF 209 (223)
T ss_pred HHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcChH-HHHHHh
Confidence 999999999999864 37899999999998865 9999999 89999999999986643 344443
No 312
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=6.5e-45 Score=399.00 Aligned_cols=216 Identities=18% Similarity=0.375 Sum_probs=183.2
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.|+++|++|+|+++ .+.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.. .....+++|
T Consensus 1937 ~L~v~nLsK~Y~~~-~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~I 2014 (2272)
T TIGR01257 1937 ILRLNELTKVYSGT-SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNM 2014 (2272)
T ss_pred eEEEEEEEEEECCC-CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhhE
Confidence 59999999999752 2469999999999999999999999999999999999999999999999999864 344567889
Q ss_pred EEEccCCcCc-cccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 020527 159 GFVGQEPQLL-QMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 232 (325)
Q Consensus 159 ~~v~Q~~~l~-~~tv~enl~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 232 (325)
||+||++.++ .+|++||+.+... ..... +.+.+.++..++.+..++.+ .+||||||||++|||||
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~---------~~LSGGqKqRLslA~AL 2085 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLA---------GTYSGGNKRKLSTAIAL 2085 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCCh---------hhCCHHHHHHHHHHHHH
Confidence 9999999888 5899999975311 11111 22334455566655544433 57999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527 233 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 308 (325)
Q Consensus 233 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 308 (325)
+.+|+|+||||||+|||+.+++.+.+.|+++++ +|+|||++||++++++. |||+++|++|++++.|+++++.+
T Consensus 2086 i~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~---~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~ 2159 (2272)
T TIGR01257 2086 IGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIR---EGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKS 2159 (2272)
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 999999999999999999999999999999864 37899999999999975 99999999999999999998854
No 313
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-44 Score=352.25 Aligned_cols=212 Identities=25% Similarity=0.360 Sum_probs=170.5
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
+++++|+++.|++...+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 58999999999764334699999999999999999999999999999999999999999999999751
Q ss_pred EEEccCCcCc-cccHHHHHhcCCC-CCCCHHH----HHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 020527 159 GFVGQEPQLL-QMDIKSNIMYGCP-KDVKNED----IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 232 (325)
Q Consensus 159 ~~v~Q~~~l~-~~tv~enl~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 232 (325)
++++.+.++ ..|++||+.+... ....... +..+++.+++.+++++.+ ..||||||||++|||||
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~---------~~LSGGQrQRVaLArAL 158 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPV---------KTYSSGMKSRLGFAISV 158 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCc---------ccCCHHHHHHHHHHHHH
Confidence 122233344 4799999976321 1111221 233445555554444433 57999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhcCH
Q 020527 233 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKGR 311 (325)
Q Consensus 233 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~~ 311 (325)
+.+|++|||||||++||+.++..+.+.|.++++ .|+|||++|||++.+.. ||++++|++|++++.|+++++.....
T Consensus 159 ~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~---~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~~~ 235 (549)
T PRK13545 159 HINPDILVIDEALSVGDQTFTKKCLDKMNEFKE---QGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYD 235 (549)
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhhHH
Confidence 999999999999999999999999999999864 47899999999999865 99999999999999999999876544
Q ss_pred HHHH
Q 020527 312 LYAK 315 (325)
Q Consensus 312 ~~~~ 315 (325)
.|.+
T Consensus 236 ~~~~ 239 (549)
T PRK13545 236 EFLK 239 (549)
T ss_pred HHHH
Confidence 4443
No 314
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=2.3e-45 Score=329.17 Aligned_cols=198 Identities=25% Similarity=0.342 Sum_probs=157.0
Q ss_pred cccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhc
Q 020527 77 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 156 (325)
Q Consensus 77 ~~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~ 156 (325)
|..+.++|++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... .
T Consensus 20 ~~~l~~~~~~~~~~~~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-----~- 90 (224)
T cd03220 20 LKKLGILGRKGEVGEF---WALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-----G- 90 (224)
T ss_pred hhhhhhhhhhhhcCCe---EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----c-
Confidence 3347899999999753 699999999999999999999999999999999999999999999999875311 1
Q ss_pred ceEEEccCCcC-ccccHHHHHhcCCC-CCCCHH----HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 020527 157 KIGFVGQEPQL-LQMDIKSNIMYGCP-KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 230 (325)
Q Consensus 157 ~i~~v~Q~~~l-~~~tv~enl~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 230 (325)
+...+ ...||+||+.++.. ...... ...++++..++.+.+++. ..+||||||||++|||
T Consensus 91 ------~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LSgG~~qrv~lar 155 (224)
T cd03220 91 ------LGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLP---------VKTYSSGMKARLAFAI 155 (224)
T ss_pred ------ccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCC---------hhhCCHHHHHHHHHHH
Confidence 11122 25799999976421 111111 122333333433333222 2579999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEc
Q 020527 231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 301 (325)
Q Consensus 231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g 301 (325)
||+.+|+++||||||++||+.++..+.+.|.++++ +|+|||++||+++.+.. ||++++|++|++++.|
T Consensus 156 al~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~---~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 156 ATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLK---QGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999864 37899999999999864 9999999999998754
No 315
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=7.5e-45 Score=319.10 Aligned_cols=190 Identities=22% Similarity=0.372 Sum_probs=156.5
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 159 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~ 159 (325)
|+++|++++|+++ .++ ++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ++.++
T Consensus 2 l~~~~l~~~~~~~---~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~ 73 (195)
T PRK13541 2 LSLHQLQFNIEQK---NLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCT 73 (195)
T ss_pred eEEEEeeEEECCc---EEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEE
Confidence 7899999999642 345 599999999999999999999999999999999999999999999875432 34699
Q ss_pred EEccCCcC-ccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCE
Q 020527 160 FVGQEPQL-LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI 238 (325)
Q Consensus 160 ~v~Q~~~l-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~l 238 (325)
|++|++.+ +..|++||+.+........+.+..+++..++.+..++.+ .+||||||||++||||++.+|++
T Consensus 74 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~~rl~la~al~~~p~~ 144 (195)
T PRK13541 74 YIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKC---------YSLSSGMQKIVAIARLIACQSDL 144 (195)
T ss_pred eccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccCh---------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 99998765 478999999874221112334455556666655444332 57999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEE
Q 020527 239 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI 289 (325)
Q Consensus 239 lllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v 289 (325)
+||||||++||+.++..+.+.+++..+ .+.|+|++||+++.+..+|-+
T Consensus 145 lllDEP~~~LD~~~~~~l~~~l~~~~~---~~~tiii~sh~~~~i~~~~~~ 192 (195)
T PRK13541 145 WLLDEVETNLSKENRDLLNNLIVMKAN---SGGIVLLSSHLESSIKSAQIL 192 (195)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCccccchhhee
Confidence 999999999999999999999986543 478999999999998888865
No 316
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=5.8e-45 Score=362.55 Aligned_cols=218 Identities=23% Similarity=0.415 Sum_probs=172.8
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCH-HHHhcc
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREK 157 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~-~~~r~~ 157 (325)
.++++|+++ .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. ..++++
T Consensus 257 ~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 328 (501)
T PRK10762 257 RLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG 328 (501)
T ss_pred EEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence 488888873 27999999999999999999999999999999999999999999999999876554 345678
Q ss_pred eEEEccCC---cCc-cccHHHHHhcCCCCCCCH--HHHHHHHHHcCHHHHHHhCCCC-cccccCCCCCChHHHHHHHHHH
Q 020527 158 IGFVGQEP---QLL-QMDIKSNIMYGCPKDVKN--EDIEWAAKQAYVHEFILSLPCG-YETLVDDDLLSGGQKQRIAIAR 230 (325)
Q Consensus 158 i~~v~Q~~---~l~-~~tv~enl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~LSgGq~QRv~iAr 230 (325)
+||+||++ .++ ..|++||+.++....... ...........+.++++.+... ........+|||||||||+|||
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~ 408 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIAR 408 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHH
Confidence 99999997 355 589999998742100000 0000000111234455554431 1223334689999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHh
Q 020527 231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 307 (325)
Q Consensus 231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 307 (325)
||+.+|++|||||||++||+.+++.+.++|+++.+ +|.|||++|||++.+.. ||++++|++|+++..++++++.
T Consensus 409 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 483 (501)
T PRK10762 409 GLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKA---EGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQAT 483 (501)
T ss_pred HHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHH---CCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccCC
Confidence 99999999999999999999999999999999964 37899999999999865 9999999999999999888764
No 317
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.9e-44 Score=395.36 Aligned_cols=215 Identities=24% Similarity=0.407 Sum_probs=180.7
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.|+++||+|.|+++ ++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .....|+.+
T Consensus 928 ~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~I 1005 (2272)
T TIGR01257 928 GVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSL 1005 (2272)
T ss_pred eEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcE
Confidence 59999999999632 2469999999999999999999999999999999999999999999999999864 345667889
Q ss_pred EEEccCCcCc-cccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 020527 159 GFVGQEPQLL-QMDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 232 (325)
Q Consensus 159 ~~v~Q~~~l~-~~tv~enl~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 232 (325)
||+||++.++ ..||+||+.+... .... ++++.+.++..++.+..++. ..+||||||||++|||||
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~---------~~~LSGGqKQRLsLArAL 1076 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEE---------AQDLSGGMQRKLSVAIAF 1076 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCC---------hhhCCHHHHHHHHHHHHH
Confidence 9999999888 5899999987421 1111 12233344444444333322 367999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527 233 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 308 (325)
Q Consensus 233 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 308 (325)
+.+|+++||||||+|||+.+++.+.++|++++ +|+|||++||+++++.. ||||++|++|++++.|+++.+.+
T Consensus 1077 i~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~----~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~ 1149 (2272)
T TIGR01257 1077 VGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR----SGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKN 1149 (2272)
T ss_pred HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh----CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999999999999999984 37899999999999975 99999999999999999998854
No 318
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-45 Score=362.41 Aligned_cols=219 Identities=23% Similarity=0.340 Sum_probs=172.9
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCH-HHHhcc
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREK 157 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~-~~~r~~ 157 (325)
.++++|+++. .+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+. ...++.
T Consensus 257 ~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 257 RLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred EEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence 4888888731 38999999999999999999999999999999999999999999999998864433 345678
Q ss_pred eEEEccCCc---Cc-cccHHHHHhcCCCCCCCH-H-HHHHHHHHcCHHHHHHhCCCC-cccccCCCCCChHHHHHHHHHH
Q 020527 158 IGFVGQEPQ---LL-QMDIKSNIMYGCPKDVKN-E-DIEWAAKQAYVHEFILSLPCG-YETLVDDDLLSGGQKQRIAIAR 230 (325)
Q Consensus 158 i~~v~Q~~~---l~-~~tv~enl~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~LSgGq~QRv~iAr 230 (325)
++|+||++. +| ..|++||+.++....... . ..........+.++++.+... ........+|||||||||+|||
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~ 409 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGR 409 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHH
Confidence 999999973 55 589999998753111000 0 000000111233455554431 1223334689999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHh
Q 020527 231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 307 (325)
Q Consensus 231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 307 (325)
||+.+|++|||||||+|||+.++..+.++|.++++ .|.|||++|||++.+.. ||++++|++|++++.|++++..
T Consensus 410 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 484 (501)
T PRK11288 410 WLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAA---QGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQAT 484 (501)
T ss_pred HHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHh---CCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccCC
Confidence 99999999999999999999999999999999975 47899999999999865 9999999999999999887654
No 319
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-44 Score=358.24 Aligned_cols=209 Identities=24% Similarity=0.435 Sum_probs=165.6
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 159 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~ 159 (325)
|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|. ..|+
T Consensus 2 l~i~~ls~~~~~~---~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 67 (530)
T PRK15064 2 LSTANITMQFGAK---PLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLG 67 (530)
T ss_pred EEEEEEEEEeCCc---EeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEE
Confidence 7899999999753 6999999999999999999999999999999999999999999999872 3599
Q ss_pred EEccCCcCc-cccHHHHHhcCCCCC------------CC----HH--HHHHH----------HHHcCHHHHHHhCCCCcc
Q 020527 160 FVGQEPQLL-QMDIKSNIMYGCPKD------------VK----NE--DIEWA----------AKQAYVHEFILSLPCGYE 210 (325)
Q Consensus 160 ~v~Q~~~l~-~~tv~enl~~~~~~~------------~~----~~--~~~~~----------~~~~~~~~~~~~~~~~~~ 210 (325)
|+||++.++ ..|++||+.++.... .. .. ...+. .....+.++++.+.....
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~ 147 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEE 147 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChh
Confidence 999999877 579999998642100 00 00 00000 001123345555443211
Q ss_pred c-ccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCE
Q 020527 211 T-LVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDR 288 (325)
Q Consensus 211 ~-~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~ 288 (325)
. .....+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|.+ .|.|||+||||++.+.. ||+
T Consensus 148 ~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~------~~~tiiivsHd~~~~~~~~d~ 221 (530)
T PRK15064 148 QHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE------RNSTMIIISHDRHFLNSVCTH 221 (530)
T ss_pred HhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh------CCCeEEEEeCCHHHHHhhcce
Confidence 1 122367999999999999999999999999999999999999999998863 26799999999999865 999
Q ss_pred EEEEeCCEE-EEEcChHHHhh
Q 020527 289 IVVIDDGRI-IEVGNHAELLH 308 (325)
Q Consensus 289 v~~l~~G~i-~~~g~~~~l~~ 308 (325)
|++|++|++ ++.|+++++++
T Consensus 222 i~~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 222 MADLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred EEEEeCCEEEEecCCHHHHHH
Confidence 999999999 47899887764
No 320
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=6.4e-44 Score=364.38 Aligned_cols=217 Identities=35% Similarity=0.491 Sum_probs=181.3
Q ss_pred cEEEEEEEEECCCC-CCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHH---
Q 020527 79 HVQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL--- 154 (325)
Q Consensus 79 ~i~~~~v~~~y~~~-~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~--- 154 (325)
.|+++|++++|++. ..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.+++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 48999999999632 12369999999999999999999999999999999999999999999999999987765443
Q ss_pred -hcceEEEccCCcCcc-ccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 020527 155 -REKIGFVGQEPQLLQ-MDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 227 (325)
Q Consensus 155 -r~~i~~v~Q~~~l~~-~tv~enl~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~ 227 (325)
++.++|+||++.+|+ .|+.||+.++... ... .++..+.++..++.+.++..+ .+|||||+||++
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~---------~~LS~Gq~qrv~ 154 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQP---------SQLSGGQQQRVS 154 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCc---------ccCCHHHHHHHH
Confidence 568999999999884 7999999763210 111 112333444444444433333 579999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHh
Q 020527 228 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL 307 (325)
Q Consensus 228 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~ 307 (325)
|||||+.+|+++||||||++||+.+++.+.++++++++ +|+|+|++||+++.+..|||+++|++|++++.|++++..
T Consensus 155 LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~---~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 155 IARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRD---RGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---cCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 99999999999999999999999999999999999864 378999999999988779999999999999999988775
No 321
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-44 Score=357.42 Aligned_cols=202 Identities=22% Similarity=0.377 Sum_probs=168.1
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.|+++|++++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. +++
T Consensus 319 ~l~~~~l~~~~~~~---~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i 384 (530)
T PRK15064 319 ALEVENLTKGFDNG---PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANI 384 (530)
T ss_pred eEEEEeeEEeeCCc---eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEE
Confidence 59999999999753 5999999999999999999999999999999999999999999999872 469
Q ss_pred EEEccCCc--Cc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCH-HHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 020527 159 GFVGQEPQ--LL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYV-HEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 234 (325)
Q Consensus 159 ~~v~Q~~~--l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~ 234 (325)
||+||++. ++ ..|+++|+.+........+.+...++..++ .+..++. ..+||||||||++|||||+.
T Consensus 385 ~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~~LSgGq~qrv~la~al~~ 455 (530)
T PRK15064 385 GYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKS---------VKVLSGGEKGRMLFGKLMMQ 455 (530)
T ss_pred EEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCc---------ccccCHHHHHHHHHHHHHhc
Confidence 99999974 44 479999986421111223344555555555 2333332 26799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEE-EEcChHHHhhc
Q 020527 235 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII-EVGNHAELLHK 309 (325)
Q Consensus 235 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~-~~g~~~~l~~~ 309 (325)
+|++|||||||++||+.++..+.+.|+++ +.|||+||||++.+.. ||++++|++|+++ ..|+++++++.
T Consensus 456 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~------~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 456 KPNVLVMDEPTNHMDMESIESLNMALEKY------EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 99999999999999999999999999876 2399999999999865 9999999999998 77888887654
No 322
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=2.7e-44 Score=358.34 Aligned_cols=215 Identities=19% Similarity=0.337 Sum_probs=172.7
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHH-Hhcc
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREK 157 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~-~r~~ 157 (325)
.|+++|+++ .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+... .+++
T Consensus 268 ~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 339 (510)
T PRK15439 268 VLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARG 339 (510)
T ss_pred eEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 489999983 1699999999999999999999999999999999999999999999999987655443 4568
Q ss_pred eEEEccCC---cCc-cccHHHHHhcCCC---C-CCCHHHHHHHHHHcCHHHHHHhCCCC-cccccCCCCCChHHHHHHHH
Q 020527 158 IGFVGQEP---QLL-QMDIKSNIMYGCP---K-DVKNEDIEWAAKQAYVHEFILSLPCG-YETLVDDDLLSGGQKQRIAI 228 (325)
Q Consensus 158 i~~v~Q~~---~l~-~~tv~enl~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~LSgGq~QRv~i 228 (325)
|+|+||++ .+| ..|+.+|+..... . ...... ....+.++++.+... .........|||||||||+|
T Consensus 340 i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~l 414 (510)
T PRK15439 340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPAR-----ENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLI 414 (510)
T ss_pred cEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHH-----HHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHH
Confidence 99999985 366 4799999853210 0 001110 111234455554432 12222346899999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHh
Q 020527 229 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 307 (325)
Q Consensus 229 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 307 (325)
||||+.+|++|||||||++||+.+++.+.+.|+++++ +|.|||++|||++++.. |||+++|++|+++..|+++++.
T Consensus 415 a~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~---~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 491 (510)
T PRK15439 415 AKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAA---QNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAIN 491 (510)
T ss_pred HHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHh---CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCC
Confidence 9999999999999999999999999999999999975 37899999999999865 9999999999999999988775
Q ss_pred hc
Q 020527 308 HK 309 (325)
Q Consensus 308 ~~ 309 (325)
.+
T Consensus 492 ~~ 493 (510)
T PRK15439 492 VD 493 (510)
T ss_pred HH
Confidence 43
No 323
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=9.7e-44 Score=357.71 Aligned_cols=210 Identities=27% Similarity=0.423 Sum_probs=166.6
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
+|+++||+++|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ ..+|
T Consensus 6 ~l~i~~l~~~y~~~--~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i 72 (556)
T PRK11819 6 IYTMNRVSKVVPPK--KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKV 72 (556)
T ss_pred EEEEeeEEEEeCCC--CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 59999999999721 3699999999999999999999999999999999999999999999974 1469
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCC---------------CCCHH----------HHHHHHH-------HcCHHHHHHhC
Q 020527 159 GFVGQEPQLL-QMDIKSNIMYGCPK---------------DVKNE----------DIEWAAK-------QAYVHEFILSL 205 (325)
Q Consensus 159 ~~v~Q~~~l~-~~tv~enl~~~~~~---------------~~~~~----------~~~~~~~-------~~~~~~~~~~~ 205 (325)
||+||++.++ ..|+.||+.++... ..... .+.+..+ ...+.++++.+
T Consensus 73 ~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (556)
T PRK11819 73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL 152 (556)
T ss_pred EEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC
Confidence 9999999887 47999999875210 00000 0000010 11233445554
Q ss_pred CCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh
Q 020527 206 PCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA 285 (325)
Q Consensus 206 ~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~ 285 (325)
.... ......+|||||||||+|||||+.+|++|||||||++||+.+...+.+.|+++ +.|||+||||++.+..
T Consensus 153 gl~~-~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~------~~tviiisHd~~~~~~ 225 (556)
T PRK11819 153 RCPP-WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY------PGTVVAVTHDRYFLDN 225 (556)
T ss_pred CCCc-ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC------CCeEEEEeCCHHHHHh
Confidence 4321 22234689999999999999999999999999999999999999999999876 2399999999999875
Q ss_pred -cCEEEEEeCCEEE-EEcChHHHhh
Q 020527 286 -VDRIVVIDDGRII-EVGNHAELLH 308 (325)
Q Consensus 286 -~d~v~~l~~G~i~-~~g~~~~l~~ 308 (325)
||+|++|++|+++ ..|+++++..
T Consensus 226 ~~d~i~~l~~g~i~~~~g~~~~~~~ 250 (556)
T PRK11819 226 VAGWILELDRGRGIPWEGNYSSWLE 250 (556)
T ss_pred hcCeEEEEeCCEEEEecCCHHHHHH
Confidence 9999999999986 6788877644
No 324
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=5.9e-44 Score=336.73 Aligned_cols=184 Identities=32% Similarity=0.500 Sum_probs=153.4
Q ss_pred EEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCcc-ccHHHHHhcCCCC-CCCH----
Q 020527 113 IVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPK-DVKN---- 186 (325)
Q Consensus 113 iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~tv~enl~~~~~~-~~~~---- 186 (325)
|+||||||||||+++|+|+++|++|+|.++|+++...+. .+++++|+||++.+|+ .||+||+.++... ....
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999999876543 3578999999999884 7999999876321 1111
Q ss_pred HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcc
Q 020527 187 EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 266 (325)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~ 266 (325)
+++.++++..++.++.++.+ .+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++.++
T Consensus 79 ~~~~~~l~~~~l~~~~~~~~---------~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~ 149 (325)
T TIGR01187 79 PRVLEALRLVQLEEFADRKP---------HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQ 149 (325)
T ss_pred HHHHHHHHHcCCcchhcCCh---------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 22333444444444333333 679999999999999999999999999999999999999999999998753
Q ss_pred CCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhc
Q 020527 267 CKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 309 (325)
Q Consensus 267 ~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 309 (325)
.|+|+|+||||++++.. |||+++|++|++++.|+++++++.
T Consensus 150 --~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~ 191 (325)
T TIGR01187 150 --LGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE 191 (325)
T ss_pred --cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 47899999999998865 999999999999999999999765
No 325
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.9e-43 Score=319.72 Aligned_cols=196 Identities=25% Similarity=0.373 Sum_probs=155.6
Q ss_pred EECCCCCCCCceeeeeEEee-----CCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 020527 87 FHYPSRPTVPILNHVCLTIE-----ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 161 (325)
Q Consensus 87 ~~y~~~~~~~iL~~isl~i~-----~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v 161 (325)
|+|++. .+.+++++|+++ +||+++|+||||||||||+++|+|+++|++|+|.++|. .|+|+
T Consensus 1 ~~y~~~--~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~ 66 (246)
T cd03237 1 YTYPTM--KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYK 66 (246)
T ss_pred CCCccc--ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEe
Confidence 356542 347788888876 79999999999999999999999999999999999884 59999
Q ss_pred ccCCcC-ccccHHHHHhcCCCCC-CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEE
Q 020527 162 GQEPQL-LQMDIKSNIMYGCPKD-VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 239 (325)
Q Consensus 162 ~Q~~~l-~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ll 239 (325)
||++.. +..||+||+.+..... .......++++..++.+.+++.+ .+||||||||++|||||+.+|+++
T Consensus 67 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~---------~~LSgGe~qrv~iaraL~~~p~ll 137 (246)
T cd03237 67 PQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREV---------PELSGGELQRVAIAACLSKDADIY 137 (246)
T ss_pred cccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCCHHHhhCCh---------hhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999875 4789999997532111 11122344555555555444333 579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEE--EEcChHHHh
Q 020527 240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII--EVGNHAELL 307 (325)
Q Consensus 240 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~--~~g~~~~l~ 307 (325)
||||||++||+.++..+.+.|+++.++ .++|||+||||++.+.. ||++++|+++..+ ..++|+++.
T Consensus 138 llDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 138 LLDEPSAYLDVEQRLMASKVIRRFAEN--NEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 999999999999999999999998653 47899999999999875 9999999765433 445666654
No 326
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=9.3e-44 Score=353.05 Aligned_cols=209 Identities=22% Similarity=0.317 Sum_probs=164.0
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC-CCCeEEECCEeCCC-CCHHHHhc
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYIDGFPLTD-LDIRWLRE 156 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~-~~G~I~i~g~~i~~-~~~~~~r~ 156 (325)
.|+++|++++|+++ .+|+|+||+|++||+++|+||||||||||+|+|+|+.+| ++|+|+++|+++.. ......++
T Consensus 260 ~l~~~~l~~~~~~~---~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 336 (490)
T PRK10938 260 RIVLNNGVVSYNDR---PILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKK 336 (490)
T ss_pred eEEEeceEEEECCe---eEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHh
Confidence 59999999999753 599999999999999999999999999999999999876 69999999987632 22234567
Q ss_pred ceEEEccCCcCc-c--ccHHHHHhcCCCC------CCCH---HHHHHHHHHcCHHH-HHHhCCCCcccccCCCCCChHHH
Q 020527 157 KIGFVGQEPQLL-Q--MDIKSNIMYGCPK------DVKN---EDIEWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQK 223 (325)
Q Consensus 157 ~i~~v~Q~~~l~-~--~tv~enl~~~~~~------~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~LSgGq~ 223 (325)
+|+|+||++.++ . .++.+++.++... .... +.+.+.++..++.+ .. .....+||||||
T Consensus 337 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---------~~~~~~LSgGq~ 407 (490)
T PRK10938 337 HIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTA---------DAPFHSLSWGQQ 407 (490)
T ss_pred hceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhc---------cCchhhCCHHHH
Confidence 899999998654 2 4677776543110 0111 12223333333322 22 222367999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-h-cCEEEEEeCCEEEEEc
Q 020527 224 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-A-VDRIVVIDDGRIIEVG 301 (325)
Q Consensus 224 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~-~d~v~~l~~G~i~~~g 301 (325)
|||+|||||+.+|++|||||||++||+.+++.+.+.|++++++ .+.|||++|||++.+. . ||++++|++|++++.-
T Consensus 408 qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~--~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 408 RLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISE--GETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred HHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhc--CCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence 9999999999999999999999999999999999999999753 2357999999999985 3 8999999999998754
No 327
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=8.3e-43 Score=350.78 Aligned_cols=210 Identities=27% Similarity=0.415 Sum_probs=166.6
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
+++++||+++|++. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +..|
T Consensus 4 ~i~~~nls~~~~~~--~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 70 (552)
T TIGR03719 4 IYTMNRVSKVVPPK--KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKV 70 (552)
T ss_pred EEEEeeEEEecCCC--CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 48999999999722 3699999999999999999999999999999999999999999999875 2469
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCC----------------CCCH---------HHHHHHHHHcC-------HHHHHHhC
Q 020527 159 GFVGQEPQLL-QMDIKSNIMYGCPK----------------DVKN---------EDIEWAAKQAY-------VHEFILSL 205 (325)
Q Consensus 159 ~~v~Q~~~l~-~~tv~enl~~~~~~----------------~~~~---------~~~~~~~~~~~-------~~~~~~~~ 205 (325)
||+||++.++ ..||+||+.++... .... .++.+.++..+ +.++++.+
T Consensus 71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (552)
T TIGR03719 71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150 (552)
T ss_pred EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence 9999999887 57999999875210 0000 01112222222 22344444
Q ss_pred CCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh
Q 020527 206 PCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA 285 (325)
Q Consensus 206 ~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~ 285 (325)
.... ......+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++.+..
T Consensus 151 ~l~~-~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~------~~tvIiisHd~~~~~~ 223 (552)
T TIGR03719 151 RCPP-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY------PGTVVAVTHDRYFLDN 223 (552)
T ss_pred CCCc-ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC------CCeEEEEeCCHHHHHh
Confidence 3321 12234679999999999999999999999999999999999999999998876 2499999999999875
Q ss_pred -cCEEEEEeCCEEE-EEcChHHHhh
Q 020527 286 -VDRIVVIDDGRII-EVGNHAELLH 308 (325)
Q Consensus 286 -~d~v~~l~~G~i~-~~g~~~~l~~ 308 (325)
||++++|++|+++ ..|+++++..
T Consensus 224 ~~d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 224 VAGWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred hcCeEEEEECCEEEEecCCHHHHHH
Confidence 9999999999976 6788887654
No 328
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.5e-43 Score=360.96 Aligned_cols=201 Identities=27% Similarity=0.441 Sum_probs=162.5
Q ss_pred CCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCC--CCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-ccc
Q 020527 95 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS--DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMD 171 (325)
Q Consensus 95 ~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~--~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~t 171 (325)
+.+|+|+|+++++||++||+||||||||||+++|+|+.+|+ +|+|.+||+++.. ..++++|||+|++.++ ..|
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~----~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK----QILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch----hhccceEEECcccccCCcCC
Confidence 46999999999999999999999999999999999999885 8999999998742 3456799999999988 579
Q ss_pred HHHHHhcCCC----CCCCHHHHHHHHHHcCHHHHHHhCCCCc--ccccC---CCCCChHHHHHHHHHHHHcCCCCEEEEe
Q 020527 172 IKSNIMYGCP----KDVKNEDIEWAAKQAYVHEFILSLPCGY--ETLVD---DDLLSGGQKQRIAIARAILRDPAILLLD 242 (325)
Q Consensus 172 v~enl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~LSgGq~QRv~iAral~~~p~llllD 242 (325)
|+||+.+... .....++.. ..++++++.+.... ++.++ ...||||||||++|||||+.+|+||+||
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLD 231 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKI-----LVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 231 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHH-----HHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEe
Confidence 9999987421 111221111 11223333332211 22222 2579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchH-H-HhcCEEEEEeCCEEEEEcChHHHh
Q 020527 243 EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST-I-KAVDRIVVIDDGRIIEVGNHAELL 307 (325)
Q Consensus 243 EPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~-~-~~~d~v~~l~~G~i~~~g~~~~l~ 307 (325)
|||+|||+.++..+.+.|+++++ +|+|||++||+++. + +.||++++|++|++++.|+++++.
T Consensus 232 EPtsgLD~~~~~~l~~~L~~l~~---~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~ 295 (659)
T PLN03211 232 EPTSGLDATAAYRLVLTLGSLAQ---KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAM 295 (659)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHh---CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHH
Confidence 99999999999999999999975 48899999999984 5 559999999999999999998875
No 329
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-43 Score=352.40 Aligned_cols=215 Identities=22% Similarity=0.389 Sum_probs=169.3
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHH-HHhcc
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR-WLREK 157 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~-~~r~~ 157 (325)
.|+++|++++| + .+|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++...+.. .+++.
T Consensus 250 ~i~~~~l~~~~--~---~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 324 (491)
T PRK10982 250 ILEVRNLTSLR--Q---PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHG 324 (491)
T ss_pred EEEEeCccccc--C---cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCC
Confidence 59999999874 2 499999999999999999999999999999999999999999999999998765543 34677
Q ss_pred eEEEccCCc---Cc-cccHHHHHhcC-----CCC-C-CCHHHHHHHHHHcCHHHHHHhCCCC-cccccCCCCCChHHHHH
Q 020527 158 IGFVGQEPQ---LL-QMDIKSNIMYG-----CPK-D-VKNEDIEWAAKQAYVHEFILSLPCG-YETLVDDDLLSGGQKQR 225 (325)
Q Consensus 158 i~~v~Q~~~---l~-~~tv~enl~~~-----~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~LSgGq~QR 225 (325)
++|+||++. +| ..|+.+|..+. ... . ...... ...+.++++.+... ........+||||||||
T Consensus 325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qr 399 (491)
T PRK10982 325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRM-----KSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQK 399 (491)
T ss_pred CEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHH-----HHHHHHHHHhcCccCCCcccccccCCcHHHHH
Confidence 999999863 55 46777663221 110 0 011111 11223344444332 11233346899999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChH
Q 020527 226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 304 (325)
Q Consensus 226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~ 304 (325)
|+||||++.+|+||||||||+|||+.++..+.+.+.++.+ .|.|||++|||++++.. |||+++|++|+++..++++
T Consensus 400 v~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~---~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 400 VIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAK---KDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTK 476 (491)
T ss_pred HHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHH---CCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEccc
Confidence 9999999999999999999999999999999999999865 37899999999999865 9999999999999888765
Q ss_pred HH
Q 020527 305 EL 306 (325)
Q Consensus 305 ~l 306 (325)
+.
T Consensus 477 ~~ 478 (491)
T PRK10982 477 TT 478 (491)
T ss_pred cC
Confidence 33
No 330
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=7.2e-43 Score=324.38 Aligned_cols=228 Identities=30% Similarity=0.439 Sum_probs=186.1
Q ss_pred cEEEEEEEEECCCC-CCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC-----CCCeEEECCEeCCCCCHH
Q 020527 79 HVQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDLDIR 152 (325)
Q Consensus 79 ~i~~~~v~~~y~~~-~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~-----~~G~I~i~g~~i~~~~~~ 152 (325)
.+.++|+++.|... ....++++|||+|++||.+||||+||||||-..+.++||++. .+|+|.|+|.++-..+..
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 58999999998632 235799999999999999999999999999999999999974 479999999999877766
Q ss_pred HHh----cceEEEccCCcC--cc-ccHHHHHh----cC--CCCCCCHHHHHHHHHHcCHHH---HHHhCCCCcccccCCC
Q 020527 153 WLR----EKIGFVGQEPQL--LQ-MDIKSNIM----YG--CPKDVKNEDIEWAAKQAYVHE---FILSLPCGYETLVDDD 216 (325)
Q Consensus 153 ~~r----~~i~~v~Q~~~l--~~-~tv~enl~----~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 216 (325)
++| .+|+++||+|.- -+ .|+...+. +- ......++++.+.++.+++.+ .++.+| +
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yP---------H 156 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYP---------H 156 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCC---------c
Confidence 665 369999999953 33 36655543 31 111122344555566665533 334444 7
Q ss_pred CCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCC
Q 020527 217 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG 295 (325)
Q Consensus 217 ~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G 295 (325)
+|||||||||+||.||+.+|++||.||||.+||...+.+|+++|++++++ .|.++++||||++.++. ||||+||.+|
T Consensus 157 eLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~--~gMa~lfITHDL~iVr~~ADrV~VM~~G 234 (534)
T COG4172 157 ELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAE--LGMAILFITHDLGIVRKFADRVYVMQHG 234 (534)
T ss_pred ccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHH--hCcEEEEEeccHHHHHHhhhhEEEEecc
Confidence 89999999999999999999999999999999999999999999999875 69999999999999976 9999999999
Q ss_pred EEEEEcChHHHhhc-CHHHHHHH
Q 020527 296 RIIEVGNHAELLHK-GRLYAKLV 317 (325)
Q Consensus 296 ~i~~~g~~~~l~~~-~~~~~~~~ 317 (325)
++++.|+.++++.. .+-|.+.+
T Consensus 235 ~ivE~~~t~~lF~~PqHpYTr~L 257 (534)
T COG4172 235 EIVETGTTETLFAAPQHPYTRKL 257 (534)
T ss_pred EEeecCcHHHHhhCCCChHHHHH
Confidence 99999999999975 45565544
No 331
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-43 Score=310.59 Aligned_cols=211 Identities=25% Similarity=0.423 Sum_probs=174.3
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCH-HHHhcc
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREK 157 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~-~~~r~~ 157 (325)
.|+++||+++|+++ ++|+|+|++|++||.++|+|||||||||||++++|.++|++|.+.+.|+.....+. .++|++
T Consensus 31 li~l~~v~v~r~gk---~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~ 107 (257)
T COG1119 31 LIELKNVSVRRNGK---KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKR 107 (257)
T ss_pred eEEecceEEEECCE---eeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHH
Confidence 59999999999864 69999999999999999999999999999999999999999999999999876665 789999
Q ss_pred eEEEccCCcC-c--cccHHHHHhcCC------CC-CCCHHH---HHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHH
Q 020527 158 IGFVGQEPQL-L--QMDIKSNIMYGC------PK-DVKNED---IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 224 (325)
Q Consensus 158 i~~v~Q~~~l-~--~~tv~enl~~~~------~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~Q 224 (325)
||||+-.-.. | +.+|+|-+.-|. +. ..++++ ....++..++.++.++ ....||-||||
T Consensus 108 IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r---------~~~~LS~Ge~r 178 (257)
T COG1119 108 IGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADR---------PFGSLSQGEQR 178 (257)
T ss_pred hCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccC---------chhhcCHhHHH
Confidence 9999865432 3 467888875432 22 222222 2333444444443332 23579999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcC
Q 020527 225 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 302 (325)
Q Consensus 225 Rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~ 302 (325)
||.|||||+.+|++|||||||+|||...++.+.+.|.++... ..+.++|+|||+.+++.. .++++.+++|+++..|.
T Consensus 179 rvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~-~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 179 RVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAAS-PGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcC-CCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 999999999999999999999999999999999999999754 347899999999999976 69999999999998763
No 332
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.2e-43 Score=321.97 Aligned_cols=202 Identities=24% Similarity=0.287 Sum_probs=156.5
Q ss_pred EEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEE-----------ECCEeCCCCCH
Q 020527 83 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY-----------IDGFPLTDLDI 151 (325)
Q Consensus 83 ~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~-----------i~g~~i~~~~~ 151 (325)
.||+|+|+.+ ..+|+|+|+ +++||+++|+||||||||||+++|+|+++|++|+|. ++|.++.....
T Consensus 4 ~~~~~~y~~~--~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~ 80 (255)
T cd03236 4 DEPVHRYGPN--SFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFT 80 (255)
T ss_pred cCcceeecCc--chhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhH
Confidence 4788999643 259999994 999999999999999999999999999999999996 78887754422
Q ss_pred HHHh--cceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 020527 152 RWLR--EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 229 (325)
Q Consensus 152 ~~~r--~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA 229 (325)
...+ ..++|++|++.+++.++.+|+.+........+...++++..++.+..++ ...+||||||||++||
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~---------~~~~LS~G~~qrv~la 151 (255)
T cd03236 81 KLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDR---------NIDQLSGGELQRVAIA 151 (255)
T ss_pred HhhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcC---------ChhhCCHHHHHHHHHH
Confidence 2222 2478999988777666667665432111112233444444444333322 2257999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEE
Q 020527 230 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEV 300 (325)
Q Consensus 230 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~ 300 (325)
||++.+|+++||||||++||+.++..+.+.++++.+ .++|||++|||++.+.. ||+|++|+ |++.+.
T Consensus 152 ral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~---~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~ 219 (255)
T cd03236 152 AALARDADFYFFDEPSSYLDIKQRLNAARLIRELAE---DDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAY 219 (255)
T ss_pred HHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---cCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcc
Confidence 999999999999999999999999999999999875 37899999999999875 99999995 556543
No 333
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.7e-42 Score=349.20 Aligned_cols=195 Identities=25% Similarity=0.300 Sum_probs=164.6
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.++++|++++|++ ..|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++ ..+
T Consensus 340 ~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i 402 (590)
T PRK13409 340 LVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKI 402 (590)
T ss_pred EEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeE
Confidence 4999999999964 25999999999999999999999999999999999999999999985 149
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC
Q 020527 159 GFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 237 (325)
Q Consensus 159 ~~v~Q~~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ 237 (325)
+|+||++.++ ..||+||+.++...........++++..++.+..++.+ .+|||||||||+|||||+.+|+
T Consensus 403 ~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~---------~~LSGGe~QRvaiAraL~~~p~ 473 (590)
T PRK13409 403 SYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNV---------KDLSGGELQRVAIAACLSRDAD 473 (590)
T ss_pred EEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCc---------ccCCHHHHHHHHHHHHHhcCCC
Confidence 9999998765 68999999875211111223445666666665555443 6799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcC
Q 020527 238 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 302 (325)
Q Consensus 238 llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~ 302 (325)
+|||||||++||+.++..+.++|++++++ .|+|+|+||||++++.. |||+++|++ ++...|.
T Consensus 474 llLLDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 474 LYLLDEPSAHLDVEQRLAVAKAIRRIAEE--REATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 99999999999999999999999999753 47899999999999865 999999964 7777665
No 334
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=9.8e-43 Score=295.93 Aligned_cols=227 Identities=23% Similarity=0.429 Sum_probs=187.9
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECC-EeCCCCCHHHH-hc
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG-FPLTDLDIRWL-RE 156 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g-~~i~~~~~~~~-r~ 156 (325)
.++++||+++|++- .+|+++||++.+||.-+|||||||||||++..|+|-.+|++|+++++| .++..++...+ |.
T Consensus 5 iL~~~~vsVsF~GF---~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~ 81 (249)
T COG4674 5 ILYLDGVSVSFGGF---KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA 81 (249)
T ss_pred eEEEeceEEEEcce---eeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHh
Confidence 48999999999864 699999999999999999999999999999999999999999999999 89988876544 66
Q ss_pred ceEEEccCCcCc-cccHHHHHhcCCCCCCCHHH----HHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 020527 157 KIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNED----IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 231 (325)
Q Consensus 157 ~i~~v~Q~~~l~-~~tv~enl~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 231 (325)
.||--||.|..| ..||+||+.+....+..-.. -....++..+++.+.....+....+....||.||||++.|+..
T Consensus 82 GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMl 161 (249)
T COG4674 82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGML 161 (249)
T ss_pred ccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhhee
Confidence 799999999999 68999999765322111100 0012222334455554444443344446799999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhcC
Q 020527 232 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 310 (325)
Q Consensus 232 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~ 310 (325)
++++|++|++|||++|+-.....+.-++|+.++. +++|++|.|||.+++. +++|-||+.|.+.+.|+.+++-+++
T Consensus 162 l~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~----~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~~dp 237 (249)
T COG4674 162 LAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG----KHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQNDP 237 (249)
T ss_pred eccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc----CceEEEEeccHHHHHHhhheeEEEeccceeecccHHHhhcCc
Confidence 9999999999999999999999999999999974 5699999999999976 9999999999999999999997765
Q ss_pred HH
Q 020527 311 RL 312 (325)
Q Consensus 311 ~~ 312 (325)
..
T Consensus 238 ~V 239 (249)
T COG4674 238 KV 239 (249)
T ss_pred ce
Confidence 43
No 335
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=3.2e-42 Score=288.37 Aligned_cols=143 Identities=35% Similarity=0.612 Sum_probs=132.9
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 159 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~ 159 (325)
++++|++++|++. ++++++||++++||+++|+||||||||||+++|+|+++|++|+|+++|. ..++
T Consensus 1 l~~~~l~~~~~~~---~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 66 (144)
T cd03221 1 IELENLSKTYGGK---LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIG 66 (144)
T ss_pred CEEEEEEEEECCc---eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEE
Confidence 4689999999753 5999999999999999999999999999999999999999999999984 3699
Q ss_pred EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEE
Q 020527 160 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 239 (325)
Q Consensus 160 ~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ll 239 (325)
|+|| ||+||+||++|||||+.+|+++
T Consensus 67 ~~~~------------------------------------------------------lS~G~~~rv~laral~~~p~il 92 (144)
T cd03221 67 YFEQ------------------------------------------------------LSGGEKMRLALAKLLLENPNLL 92 (144)
T ss_pred EEcc------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEE
Confidence 9998 7999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCE
Q 020527 240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR 296 (325)
Q Consensus 240 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~ 296 (325)
|+||||++||+.++..+.+.++++ +.|++++||+++.+.. ||++++|++|+
T Consensus 93 llDEP~~~LD~~~~~~l~~~l~~~------~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 93 LLDEPTNHLDLESIEALEEALKEY------PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHc------CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999876 3599999999999865 99999999985
No 336
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=5.8e-42 Score=304.92 Aligned_cols=186 Identities=19% Similarity=0.255 Sum_probs=146.4
Q ss_pred ceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEE-ECCEeCCCCCHHHHhcceEEEccCCcCcc-ccHHH
Q 020527 97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY-IDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKS 174 (325)
Q Consensus 97 iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~-i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~tv~e 174 (325)
+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|. ++|..+. +.+.+.+|+ .|++|
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~-------------~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALP-------------LGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceec-------------cccccccCCcCcHHH
Confidence 79999999999999999999999999999999999999999997 7775321 234566664 79999
Q ss_pred HHhcCCC-CCCCHHHHHH-HHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHH
Q 020527 175 NIMYGCP-KDVKNEDIEW-AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 252 (325)
Q Consensus 175 nl~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~ 252 (325)
|+.+... ......+... ..+..++.+..+.. ...||||||||++||||++.+|+++||||||+++|+.+
T Consensus 69 nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~ 139 (213)
T PRK15177 69 NARMMASLYGLDGDEFSHFCYQLTQLEQCYTDR---------VSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNAT 139 (213)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhChhHHhhch---------HhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHH
Confidence 9976421 1122222221 22223333332222 25699999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhh
Q 020527 253 EHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLH 308 (325)
Q Consensus 253 ~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~ 308 (325)
+..+.+.+.+..+ ++|+|++||+++.+. .||++++|++|++++.++.++..+
T Consensus 140 ~~~~~~~l~~~~~----~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 192 (213)
T PRK15177 140 QLRMQAALACQLQ----QKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATA 192 (213)
T ss_pred HHHHHHHHHHHhh----CCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHH
Confidence 9999998765432 358999999999986 599999999999999999887753
No 337
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=9.8e-42 Score=343.19 Aligned_cols=203 Identities=22% Similarity=0.335 Sum_probs=162.6
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.|+++||+++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ + .+|
T Consensus 324 ~l~~~~l~~~~~~~---~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~i 389 (556)
T PRK11819 324 VIEAENLSKSFGDR---LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T----------VKL 389 (556)
T ss_pred EEEEEeEEEEECCe---eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c----------eEE
Confidence 59999999999753 599999999999999999999999999999999999999999999954 2 159
Q ss_pred EEEccCC-cCc-cccHHHHHhcCCCCC-C--CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 020527 159 GFVGQEP-QLL-QMDIKSNIMYGCPKD-V--KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 233 (325)
Q Consensus 159 ~~v~Q~~-~l~-~~tv~enl~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 233 (325)
||+||++ .++ ..|++||+.++.... . ........++..++.. ........+||||||||++|||||+
T Consensus 390 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~--------~~~~~~~~~LSgG~~qrv~la~al~ 461 (556)
T PRK11819 390 AYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKG--------GDQQKKVGVLSGGERNRLHLAKTLK 461 (556)
T ss_pred EEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCCh--------hHhcCchhhCCHHHHHHHHHHHHHh
Confidence 9999997 555 579999998753111 1 1111222333333211 1112223679999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeC-CEEE-EEcChHHHhhc
Q 020527 234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD-GRII-EVGNHAELLHK 309 (325)
Q Consensus 234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~-G~i~-~~g~~~~l~~~ 309 (325)
.+|++|||||||++||+.++..+.+.|.++ .+ |||+||||++.+.. ||++++|++ |++. ..|+.++++++
T Consensus 462 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-----~~-tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 462 QGGNVLLLDEPTNDLDVETLRALEEALLEF-----PG-CAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-----CC-eEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 999999999999999999999999999887 24 89999999999865 999999986 7876 46788777654
No 338
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=9.8e-42 Score=342.98 Aligned_cols=202 Identities=21% Similarity=0.319 Sum_probs=160.6
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.++++|++++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ + .+|
T Consensus 322 ~l~~~~l~~~~~~~---~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~----------~~i 387 (552)
T TIGR03719 322 VIEAENLSKGFGDK---LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T----------VKL 387 (552)
T ss_pred EEEEeeEEEEECCe---eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c----------eEE
Confidence 59999999999753 599999999999999999999999999999999999999999999954 2 159
Q ss_pred EEEccCCc-Cc-cccHHHHHhcCCCC-CCC--HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 020527 159 GFVGQEPQ-LL-QMDIKSNIMYGCPK-DVK--NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 233 (325)
Q Consensus 159 ~~v~Q~~~-l~-~~tv~enl~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 233 (325)
||+||++. ++ ..|++||+.++... ... .......++..++.. ........+|||||||||+|||||+
T Consensus 388 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~--------~~~~~~~~~LSgGe~qrv~la~al~ 459 (552)
T TIGR03719 388 AYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKG--------SDQQKKVGQLSGGERNRVHLAKTLK 459 (552)
T ss_pred EEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCCh--------hHhcCchhhCCHHHHHHHHHHHHHh
Confidence 99999974 55 57999999875321 111 111222233333211 1112223679999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeC-CEEE-EEcChHHHhh
Q 020527 234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD-GRII-EVGNHAELLH 308 (325)
Q Consensus 234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~-G~i~-~~g~~~~l~~ 308 (325)
.+|++|||||||++||+.++..+.+.|.++. + |||+||||++.+.. ||++++|++ |+++ ..|+.+++..
T Consensus 460 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-----~-~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 460 SGGNVLLLDEPTNDLDVETLRALEEALLEFA-----G-CAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC-----C-eEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 9999999999999999999999999999872 3 89999999999865 999999987 5876 4577666543
No 339
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=8.9e-42 Score=287.53 Aligned_cols=233 Identities=27% Similarity=0.447 Sum_probs=185.0
Q ss_pred cEEEEEEEEECCCC------CCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHH
Q 020527 79 HVQFVNISFHYPSR------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR 152 (325)
Q Consensus 79 ~i~~~~v~~~y~~~------~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~ 152 (325)
-++++|++|+|..+ ....+++.|||++++|+.+||+|.||||||||.|+|+|.++|++|+|.+||.++.-.+..
T Consensus 4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~ 83 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYS 83 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchH
Confidence 47899999887532 124699999999999999999999999999999999999999999999999998765555
Q ss_pred HHhcceEEEccCCcC-c--cccHHHHHhcCCC--CC----CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHH
Q 020527 153 WLREKIGFVGQEPQL-L--QMDIKSNIMYGCP--KD----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK 223 (325)
Q Consensus 153 ~~r~~i~~v~Q~~~l-~--~~tv~enl~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~ 223 (325)
...++|-++||||+- | ...+-.-+..+.. .. ...+++.+.++.+++. | ..+...+..||-|||
T Consensus 84 ~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~------P--dhan~~~~~la~~QK 155 (267)
T COG4167 84 FRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLL------P--DHANYYPHMLAPGQK 155 (267)
T ss_pred hhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccC------c--cccccchhhcCchhH
Confidence 556789999999964 3 2344444433321 11 1123344455554432 2 122333467999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcC
Q 020527 224 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 302 (325)
Q Consensus 224 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~ 302 (325)
||||+||||+.+|+|+|.||+.++||...+.++.+++.++.++ .|.+.|+|+.++..++. +|.|+||++|++++.|+
T Consensus 156 QRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek--~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~ 233 (267)
T COG4167 156 QRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEK--QGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGS 233 (267)
T ss_pred HHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHH--hCceEEEEechhhHhhhhcccEEEEecCceeecCC
Confidence 9999999999999999999999999999999999999999864 69999999999999987 99999999999999999
Q ss_pred hHHHhhcC--HHHHHHHHHhh
Q 020527 303 HAELLHKG--RLYAKLVKRQT 321 (325)
Q Consensus 303 ~~~l~~~~--~~~~~~~~~~~ 321 (325)
+.++++.. .+-.+++.+.+
T Consensus 234 t~~v~a~P~~~~TkRlieShF 254 (267)
T COG4167 234 TADVLASPLHELTKRLIESHF 254 (267)
T ss_pred hhhhhcCCccHHHHHHHHHHh
Confidence 99998753 34455555543
No 340
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.1e-42 Score=298.08 Aligned_cols=221 Identities=26% Similarity=0.405 Sum_probs=177.9
Q ss_pred EEEEEEEEECCCC--CCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 020527 80 VQFVNISFHYPSR--PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 157 (325)
Q Consensus 80 i~~~~v~~~y~~~--~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~ 157 (325)
+.+.|+.+.|... .++++|+++|++|++|+++.|+|.||||||||+++|+|-++|++|+|.++|.+++.++.......
T Consensus 2 i~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~ 81 (263)
T COG1101 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANL 81 (263)
T ss_pred cccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhH
Confidence 4567777766422 13679999999999999999999999999999999999999999999999999999988777778
Q ss_pred eEEEccCCcC--c-cccHHHHHhcCCCCC--CCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHH
Q 020527 158 IGFVGQEPQL--L-QMDIKSNIMYGCPKD--VKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIAR 230 (325)
Q Consensus 158 i~~v~Q~~~l--~-~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAr 230 (325)
++-|||+|.. + ++||.||+.+...+. ...........+....+.+..++.|+...... .-|||||||-++++.
T Consensus 82 larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~M 161 (263)
T COG1101 82 LARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLM 161 (263)
T ss_pred HHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHH
Confidence 9999999953 4 689999997642210 00000011112223334566666666655542 469999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcC
Q 020527 231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGN 302 (325)
Q Consensus 231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~ 302 (325)
|.++.|+||+|||-|++|||.+...+++.=.++.++ .+.|.+||||+|+.+- +.+|.++|++|+|+.+-+
T Consensus 162 Atl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~--~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~ 232 (263)
T COG1101 162 ATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEE--HKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVT 232 (263)
T ss_pred HhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHh--cCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEcc
Confidence 999999999999999999999999999999888764 4789999999999875 579999999999997643
No 341
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.1e-41 Score=292.21 Aligned_cols=157 Identities=29% Similarity=0.368 Sum_probs=137.2
Q ss_pred EEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEc
Q 020527 83 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG 162 (325)
Q Consensus 83 ~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~ 162 (325)
.|++++|++. .++++ +|+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ++|+|
T Consensus 4 ~~l~~~~~~~---~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------------i~~~~ 67 (177)
T cd03222 4 PDCVKRYGVF---FLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------------PVYKP 67 (177)
T ss_pred CCeEEEECCE---EEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------------EEEEc
Confidence 5889999753 58888 49999999999999999999999999999999999999999853 78888
Q ss_pred cCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEe
Q 020527 163 QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLD 242 (325)
Q Consensus 163 Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllD 242 (325)
|++. ||||||||++||||++.+|+++|||
T Consensus 68 q~~~---------------------------------------------------LSgGq~qrv~laral~~~p~lllLD 96 (177)
T cd03222 68 QYID---------------------------------------------------LSGGELQRVAIAAALLRNATFYLFD 96 (177)
T ss_pred ccCC---------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 8542 7999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEE--cChHHHhh
Q 020527 243 EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEV--GNHAELLH 308 (325)
Q Consensus 243 EPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~--g~~~~l~~ 308 (325)
|||++||+.+++.+.+.+.+++++ .+.|+|++||+++.+.. ||++++|+++-.+.. |.|....+
T Consensus 97 EPts~LD~~~~~~l~~~l~~~~~~--~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~~ 163 (177)
T cd03222 97 EPSAYLDIEQRLNAARAIRRLSEE--GKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPKGTRE 163 (177)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHc--CCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCcchhH
Confidence 999999999999999999998642 24799999999999875 999999998766533 56654443
No 342
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-41 Score=343.31 Aligned_cols=199 Identities=22% Similarity=0.347 Sum_probs=161.4
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.|+++||+++|+++ .+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++. .++
T Consensus 312 ~l~~~~l~~~y~~~---~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 377 (638)
T PRK10636 312 LLKMEKVSAGYGDR---IILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL 377 (638)
T ss_pred eEEEEeeEEEeCCe---eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence 59999999999753 5999999999999999999999999999999999999999999999741 269
Q ss_pred EEEccCC--cCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHH-HHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 020527 159 GFVGQEP--QLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 234 (325)
Q Consensus 159 ~~v~Q~~--~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~ 234 (325)
||++|++ .+. ..|+.+++... ........+...+..+++.. ..++ ....|||||||||+|||+|+.
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~l~~~~~~~---------~~~~LSgGekqRl~La~~l~~ 447 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARL-APQELEQKLRDYLGGFGFQGDKVTE---------ETRRFSGGEKARLVLALIVWQ 447 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHh-CchhhHHHHHHHHHHcCCChhHhcC---------chhhCCHHHHHHHHHHHHHhc
Confidence 9999985 233 35888876421 11112233344444444421 2222 236799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEE-EEcChHHHh
Q 020527 235 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII-EVGNHAELL 307 (325)
Q Consensus 235 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~-~~g~~~~l~ 307 (325)
+|++|||||||++||+.+...+.+.|.++ .| |||+||||++++.. ||+|++|++|+++ ..|++++..
T Consensus 448 ~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-----~g-tvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 448 RPNLLLLDEPTNHLDLDMRQALTEALIDF-----EG-ALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHc-----CC-eEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 99999999999999999999999999887 24 99999999999865 9999999999997 678887763
No 343
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=1.5e-41 Score=345.25 Aligned_cols=203 Identities=28% Similarity=0.477 Sum_probs=166.8
Q ss_pred CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCC---CCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-c
Q 020527 94 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-Q 169 (325)
Q Consensus 94 ~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~ 169 (325)
++++|+|+|+++++||+++|+|||||||||||++|+|..+|. +|+|.+||.++. ...+++.+||++|++.++ .
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~---~~~~~~~i~yv~Q~~~~~~~ 113 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID---AKEMRAISAYVQQDDLFIPT 113 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC---HHHHhhhceeeccccccCcc
Confidence 357999999999999999999999999999999999999885 899999999874 345678899999999888 5
Q ss_pred ccHHHHHhcCCCC----CCCHHHHHHHHHHcCHHHHHHhCCC--CcccccCC----CCCChHHHHHHHHHHHHcCCCCEE
Q 020527 170 MDIKSNIMYGCPK----DVKNEDIEWAAKQAYVHEFILSLPC--GYETLVDD----DLLSGGQKQRIAIARAILRDPAIL 239 (325)
Q Consensus 170 ~tv~enl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----~~LSgGq~QRv~iAral~~~p~ll 239 (325)
+||+||+.|+... ....++ +...++++++.++. ..++.++. ..|||||||||+|||||+.+|+++
T Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~-----~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vl 188 (617)
T TIGR00955 114 LTVREHLMFQAHLRMPRRVTKKE-----KRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLL 188 (617)
T ss_pred CcHHHHHHHHHhcCCCCCCCHHH-----HHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEE
Confidence 7999999875321 111111 11223444444433 22444442 369999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCch-HH-HhcCEEEEEeCCEEEEEcChHHHh
Q 020527 240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS-TI-KAVDRIVVIDDGRIIEVGNHAELL 307 (325)
Q Consensus 240 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~l~ 307 (325)
+|||||+|||+.++..+.+.++++++ +|+|+|+++|+++ .+ ..||++++|++|++++.|+++++.
T Consensus 189 llDEPtsgLD~~~~~~l~~~L~~l~~---~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~ 255 (617)
T TIGR00955 189 FCDEPTSGLDSFMAYSVVQVLKGLAQ---KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAV 255 (617)
T ss_pred EeeCCCcchhHHHHHHHHHHHHHHHh---CCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHH
Confidence 99999999999999999999999974 4889999999996 44 569999999999999999998874
No 344
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-41 Score=340.63 Aligned_cols=209 Identities=24% Similarity=0.350 Sum_probs=156.4
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 159 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~ 159 (325)
|+++||+++|+++ .+|+|+||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|.. .++
T Consensus 2 i~i~nls~~~g~~---~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~ 67 (638)
T PRK10636 2 IVFSSLQIRRGVR---VLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLA 67 (638)
T ss_pred EEEEEEEEEeCCc---eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEE
Confidence 7899999999753 59999999999999999999999999999999999999999999998731 377
Q ss_pred EEccCCcCccccHHHHHhcCCCC-------------CCCHHHH---HHHH-------HHcCHHHHHHhCCCC-cccccCC
Q 020527 160 FVGQEPQLLQMDIKSNIMYGCPK-------------DVKNEDI---EWAA-------KQAYVHEFILSLPCG-YETLVDD 215 (325)
Q Consensus 160 ~v~Q~~~l~~~tv~enl~~~~~~-------------~~~~~~~---~~~~-------~~~~~~~~~~~~~~~-~~~~~~~ 215 (325)
|++|++..+..++.+++.-.... ....... .... ....+.++++.+... .......
T Consensus 68 ~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~ 147 (638)
T PRK10636 68 WVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPV 147 (638)
T ss_pred EEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCch
Confidence 78776433334554444211000 0000000 0000 011233455554432 1122234
Q ss_pred CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeC
Q 020527 216 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD 294 (325)
Q Consensus 216 ~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~ 294 (325)
.+|||||||||+|||||+.+|++|||||||++||+.+...+.+.|.++ +.|||+||||++++.. ||++++|++
T Consensus 148 ~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~------~~tviivsHd~~~l~~~~d~i~~L~~ 221 (638)
T PRK10636 148 SDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY------QGTLILISHDRDFLDPIVDKIIHIEQ 221 (638)
T ss_pred hhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC------CCeEEEEeCCHHHHHHhcCEEEEEeC
Confidence 679999999999999999999999999999999999999999988775 3599999999999865 999999999
Q ss_pred CEEEE-EcChHHHhh
Q 020527 295 GRIIE-VGNHAELLH 308 (325)
Q Consensus 295 G~i~~-~g~~~~l~~ 308 (325)
|++.. .|+.+....
T Consensus 222 G~i~~~~g~~~~~~~ 236 (638)
T PRK10636 222 QSLFEYTGNYSSFEV 236 (638)
T ss_pred CEEEEecCCHHHHHH
Confidence 99964 677766543
No 345
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=7.5e-41 Score=341.35 Aligned_cols=199 Identities=22% Similarity=0.420 Sum_probs=159.3
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.|+++||+++|+++ ++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+ |.++ .|
T Consensus 319 ~l~~~~l~~~~~~~---~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i 384 (635)
T PRK11147 319 VFEMENVNYQIDGK---QLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EV 384 (635)
T ss_pred eEEEeeeEEEECCe---EEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EE
Confidence 59999999999753 5999999999999999999999999999999999999999999998 4321 59
Q ss_pred EEEccCC-cCc-cccHHHHHhcCCCCC-CC--HHHHHHHHHHcCHH-HHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 020527 159 GFVGQEP-QLL-QMDIKSNIMYGCPKD-VK--NEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 232 (325)
Q Consensus 159 ~~v~Q~~-~l~-~~tv~enl~~~~~~~-~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 232 (325)
||++|++ .++ ..||.||+.++.... .. ...+...+...++. +..+ .....|||||||||+|||||
T Consensus 385 ~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~~LSgGekqRl~la~al 455 (635)
T PRK11147 385 AYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAM---------TPVKALSGGERNRLLLARLF 455 (635)
T ss_pred EEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHh---------ChhhhCCHHHHHHHHHHHHH
Confidence 9999986 455 579999998753211 01 12222333333331 1111 22367999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEe-CCEEEEE-cChHHH
Q 020527 233 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID-DGRIIEV-GNHAEL 306 (325)
Q Consensus 233 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~-~G~i~~~-g~~~~l 306 (325)
+.+|++|||||||++||+.+...+.++++++ +.|||+||||.+++.. ||++++|+ +|++... |+.++.
T Consensus 456 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~------~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 456 LKPSNLLILDEPTNDLDVETLELLEELLDSY------QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC------CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 9999999999999999999999999988876 2399999999999865 99999998 8998764 565554
No 346
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=3.8e-41 Score=366.67 Aligned_cols=212 Identities=24% Similarity=0.426 Sum_probs=172.2
Q ss_pred cEEEEEEEEECCCC-CCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC---CCCCeEEECCEeCCCCCHHHH
Q 020527 79 HVQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE---PSDGQIYIDGFPLTDLDIRWL 154 (325)
Q Consensus 79 ~i~~~~v~~~y~~~-~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~---~~~G~I~i~g~~i~~~~~~~~ 154 (325)
.++++||+++|+.+ ..+.+|+|||+++++||+++|+||||||||||+++|+|+.+ |++|+|.+||+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 47999999999522 13469999999999999999999999999999999999997 78899999999874 246
Q ss_pred hcceEEEccCCcCc-cccHHHHHhcCCC----CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHH
Q 020527 155 REKIGFVGQEPQLL-QMDIKSNIMYGCP----KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQK 223 (325)
Q Consensus 155 r~~i~~v~Q~~~l~-~~tv~enl~~~~~----~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~LSgGq~ 223 (325)
|+.+|||+|++.++ ..||+||+.++.. ....+ +.+.++++..++.+..+. .++ ...||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~-------~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADA-------VVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCC-------eeCCCCCCCCHHHh
Confidence 78899999997665 6899999987421 11122 123344444444433222 222 136999999
Q ss_pred HHHHHHHHHcCCCC-EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHH--HhcCEEEEEeCC-EEEE
Q 020527 224 QRIAIARAILRDPA-ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI--KAVDRIVVIDDG-RIIE 299 (325)
Q Consensus 224 QRv~iAral~~~p~-llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~--~~~d~v~~l~~G-~i~~ 299 (325)
||++|||||+.+|+ ||+|||||+|||+.++..+.+.|+++++ +|+|||+++|+++.. ..||++++|++| ++++
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~---~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~ 984 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD---HGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVY 984 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHH---cCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEE
Confidence 99999999999997 9999999999999999999999999964 488999999999863 569999999997 9999
Q ss_pred EcChH
Q 020527 300 VGNHA 304 (325)
Q Consensus 300 ~g~~~ 304 (325)
.|++.
T Consensus 985 ~G~~~ 989 (1394)
T TIGR00956 985 FGDLG 989 (1394)
T ss_pred ECCcc
Confidence 99874
No 347
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-40 Score=281.81 Aligned_cols=155 Identities=45% Similarity=0.749 Sum_probs=143.1
Q ss_pred EEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 020527 82 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 161 (325)
Q Consensus 82 ~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v 161 (325)
++|+++.|+++ .+++++||+|++|++++|+||||||||||+++|+|+++|++|+|+++|.++.......+++.++|+
T Consensus 2 ~~~~~~~~~~~---~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~ 78 (157)
T cd00267 2 IENLSFRYGGR---TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYV 78 (157)
T ss_pred eEEEEEEeCCe---eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEE
Confidence 68999999753 599999999999999999999999999999999999999999999999988765556667889999
Q ss_pred ccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEE
Q 020527 162 GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLL 241 (325)
Q Consensus 162 ~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llll 241 (325)
|| ||+||+||++||||++.+|++++|
T Consensus 79 ~q------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~il 104 (157)
T cd00267 79 PQ------------------------------------------------------LSGGQRQRVALARALLLNPDLLLL 104 (157)
T ss_pred ee------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99 799999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCE
Q 020527 242 DEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR 296 (325)
Q Consensus 242 DEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~ 296 (325)
||||++||+.++..+.+.+.++.+ .++|++++||+++.+.. ||++++|++|+
T Consensus 105 DEp~~~lD~~~~~~l~~~l~~~~~---~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 105 DEPTSGLDPASRERLLELLRELAE---EGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 999999999999999999999864 26799999999999976 79999999874
No 348
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=1.6e-40 Score=340.73 Aligned_cols=199 Identities=27% Similarity=0.433 Sum_probs=157.5
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.|+++||+++|+++ ..+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++ +.+|
T Consensus 508 ~L~~~~ls~~y~~~--~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 508 IISFSDASFGYPGG--PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred eEEEEeeEEEeCCC--CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 59999999999642 3599999999999999999999999999999999999999999999865 2469
Q ss_pred EEEccCCcCccccHHHHHh--cC-CCCCCCHHHHHHHHHHcCHHH-HHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 020527 159 GFVGQEPQLLQMDIKSNIM--YG-CPKDVKNEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 234 (325)
Q Consensus 159 ~~v~Q~~~l~~~tv~enl~--~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~ 234 (325)
||+||++. ...++.+|.. +. .......+.+..+++.+++.. ...+ ....|||||||||+|||||+.
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~---------~~~~LSgGqkqRvaLAraL~~ 644 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQ---------PMYTLSGGQKSRVAFAKITFK 644 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcC---------CccccCHHHHHHHHHHHHHhc
Confidence 99999862 2234444422 11 011223444555555555532 2222 236799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEE-EEcChHHH
Q 020527 235 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII-EVGNHAEL 306 (325)
Q Consensus 235 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~-~~g~~~~l 306 (325)
+|++|||||||++||+.+...+.+.+.++ .+ |||+||||++++.. ||++++|++|+++ ..|++++.
T Consensus 645 ~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-----~g-tvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 645 KPHILLLDEPSNHLDLDAVEALIQGLVLF-----QG-GVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHc-----CC-EEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 99999999999999999999888887664 24 99999999999975 9999999999998 56776653
No 349
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=4.3e-40 Score=335.82 Aligned_cols=209 Identities=27% Similarity=0.417 Sum_probs=156.7
Q ss_pred ccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 020527 78 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 157 (325)
Q Consensus 78 ~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~ 157 (325)
.+|+++||+++|+++ .+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.. .
T Consensus 2 ~~l~i~~ls~~~~~~---~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~-----------~ 67 (635)
T PRK11147 2 SLISIHGAWLSFSDA---PLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL-----------I 67 (635)
T ss_pred cEEEEeeEEEEeCCc---eeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC-----------E
Confidence 359999999999753 69999999999999999999999999999999999999999999998631 2
Q ss_pred eEEEccCCcCc-cccHHHHHhcCC-----------------CCCCCHHHHHH---H---H-------HHcCHHHHHHhCC
Q 020527 158 IGFVGQEPQLL-QMDIKSNIMYGC-----------------PKDVKNEDIEW---A---A-------KQAYVHEFILSLP 206 (325)
Q Consensus 158 i~~v~Q~~~l~-~~tv~enl~~~~-----------------~~~~~~~~~~~---~---~-------~~~~~~~~~~~~~ 206 (325)
+++++|.+... ..++.+++..+. ......+.+.. . . ....+.++++.+.
T Consensus 68 ~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 147 (635)
T PRK11147 68 VARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLG 147 (635)
T ss_pred EEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCC
Confidence 56666654321 244555432110 00000000000 0 0 0112344555544
Q ss_pred CCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-
Q 020527 207 CGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA- 285 (325)
Q Consensus 207 ~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~- 285 (325)
.. .......|||||||||+|||||+.+|+||||||||++||+.+...+.+.|.++ +.|||+||||..++..
T Consensus 148 l~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~------~~tvlivsHd~~~l~~~ 219 (635)
T PRK11147 148 LD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF------QGSIIFISHDRSFIRNM 219 (635)
T ss_pred CC--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC------CCEEEEEeCCHHHHHHh
Confidence 32 22334679999999999999999999999999999999999999999999877 2499999999999965
Q ss_pred cCEEEEEeCCEEEE-EcChHHHhh
Q 020527 286 VDRIVVIDDGRIIE-VGNHAELLH 308 (325)
Q Consensus 286 ~d~v~~l~~G~i~~-~g~~~~l~~ 308 (325)
||+|++|++|+++. .|++++.+.
T Consensus 220 ~d~i~~L~~G~i~~~~g~~~~~~~ 243 (635)
T PRK11147 220 ATRIVDLDRGKLVSYPGNYDQYLL 243 (635)
T ss_pred cCeEEEEECCEEEEecCCHHHHHH
Confidence 99999999999975 588776654
No 350
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-40 Score=285.59 Aligned_cols=218 Identities=28% Similarity=0.390 Sum_probs=179.9
Q ss_pred cccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcC--CCCCCCeEEECCEeCCCCCHHHH
Q 020527 77 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWL 154 (325)
Q Consensus 77 ~~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl--~~~~~G~I~i~g~~i~~~~~~~~ 154 (325)
|..++++|++.+..++ +.+|++|||+|++||+.+|+||||||||||.++|+|. |++++|+|.++|+++.++++.+.
T Consensus 1 m~~L~I~dLhv~v~~~--keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ER 78 (251)
T COG0396 1 MMMLEIKDLHVEVEGK--KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDER 78 (251)
T ss_pred CceeEEeeeEEEecCc--hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHH
Confidence 3469999999998753 3699999999999999999999999999999999998 47899999999999999987654
Q ss_pred -hcceEEEccCCcCcc-ccHHHHHhcCCCC--C------CCHHHHHHHHHHcCHHH-HHHhCCCCcccccCCCCCChHHH
Q 020527 155 -REKIGFVGQEPQLLQ-MDIKSNIMYGCPK--D------VKNEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQK 223 (325)
Q Consensus 155 -r~~i~~v~Q~~~l~~-~tv~enl~~~~~~--~------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~LSgGq~ 223 (325)
|..|..-||.|.=++ .++.+.+..+... . .....+.+.++..++++ ++++.-. ..+|||||
T Consensus 79 Ar~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN--------~GFSGGEk 150 (251)
T COG0396 79 ARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVN--------EGFSGGEK 150 (251)
T ss_pred HhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccC--------CCcCcchH
Confidence 677999999998776 4888888643211 1 11223344455555444 3332211 35999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh--cCEEEEEeCCEEEEEc
Q 020527 224 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIVVIDDGRIIEVG 301 (325)
Q Consensus 224 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~--~d~v~~l~~G~i~~~g 301 (325)
+|..|+.+++.+|++.|||||-||||..+-+.+.+.+.+++. .|.++++|||.-..+.. .|+|.+|-+|+|+.+|
T Consensus 151 KR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~---~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG 227 (251)
T COG0396 151 KRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALRE---EGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSG 227 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhc---CCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999975 48899999999999876 4999999999999999
Q ss_pred ChHHHhh
Q 020527 302 NHAELLH 308 (325)
Q Consensus 302 ~~~~l~~ 308 (325)
.+ ++..
T Consensus 228 ~~-el~~ 233 (251)
T COG0396 228 DP-ELAE 233 (251)
T ss_pred CH-HHHH
Confidence 99 5543
No 351
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.5e-40 Score=269.71 Aligned_cols=198 Identities=25% Similarity=0.434 Sum_probs=167.9
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCC---CCeEEECCEeCCCCCHHHHh
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLDIRWLR 155 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~---~G~I~i~g~~i~~~~~~~~r 155 (325)
.+.++||+.+.+++ ..|-++||+|.+||++.|+||||||||||+.-+.|.+.++ +|++++|+++++.++.. +
T Consensus 2 ~l~l~nvsl~l~g~---cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~--q 76 (213)
T COG4136 2 MLCLKNVSLRLPGS---CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--Q 76 (213)
T ss_pred ceeeeeeeecCCCc---eEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh--h
Confidence 47899999888764 5899999999999999999999999999999999999875 89999999999877644 6
Q ss_pred cceEEEccCCcCc-cccHHHHHhcCCCCCC----CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 020527 156 EKIGFVGQEPQLL-QMDIKSNIMYGCPKDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 230 (325)
Q Consensus 156 ~~i~~v~Q~~~l~-~~tv~enl~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 230 (325)
+++|++|||+.+| ..+|.+|+.|..+... .+.....++++.++.++..+.| .+||||||-||++-|
T Consensus 77 Rq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP---------~tlSGGQrARvaL~R 147 (213)
T COG4136 77 RQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDP---------ATLSGGQRARVALLR 147 (213)
T ss_pred hheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcCh---------hhcCcchHHHHHHHH
Confidence 7899999999999 5899999998764322 2233455777778877777766 579999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEE
Q 020527 231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 292 (325)
Q Consensus 231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l 292 (325)
+|+.+|+.++||||+|.||..-+.++.+..-.-.+ ..|..+|+||||...+..-.||+-|
T Consensus 148 ~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r--~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 148 ALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVR--AAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred HHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHH--hcCCCeEEEecccccCCCCCeeeee
Confidence 99999999999999999999999999887644333 3589999999999988765676655
No 352
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=1.4e-39 Score=321.55 Aligned_cols=211 Identities=32% Similarity=0.497 Sum_probs=165.2
Q ss_pred cccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhc
Q 020527 77 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 156 (325)
Q Consensus 77 ~~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~ 156 (325)
|..|+++|++++|+++ ++|+|+||+|.+|+++||||+||||||||||+|+|...|++|+|...+. .
T Consensus 1 m~~i~~~~ls~~~g~~---~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~ 66 (530)
T COG0488 1 MSMITLENLSLAYGDR---PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------L 66 (530)
T ss_pred CceEEEeeeEEeeCCc---eeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------c
Confidence 3469999999999754 6999999999999999999999999999999999999999999987641 2
Q ss_pred ceEEEccCCcCcc-ccHHHHHhcCCCCCCC-HHHHHHHH------------------H-------HcCHHHHHHhCCCCc
Q 020527 157 KIGFVGQEPQLLQ-MDIKSNIMYGCPKDVK-NEDIEWAA------------------K-------QAYVHEFILSLPCGY 209 (325)
Q Consensus 157 ~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~-~~~~~~~~------------------~-------~~~~~~~~~~~~~~~ 209 (325)
+++|++|++.+.+ .||.+.+..+...... ..+...+. . ...+...+..++...
T Consensus 67 ~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~ 146 (530)
T COG0488 67 RVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPD 146 (530)
T ss_pred eEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCc
Confidence 5999999999884 6999998765311000 00000000 0 012233444433322
Q ss_pred ccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCE
Q 020527 210 ETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDR 288 (325)
Q Consensus 210 ~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~ 288 (325)
. .....+||||||.||+|||||+.+|++|||||||++||..+...+.+.|..+ .| |+|+||||-.++.. |++
T Consensus 147 ~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-----~g-tviiVSHDR~FLd~V~t~ 219 (530)
T COG0488 147 E-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-----PG-TVIVVSHDRYFLDNVATH 219 (530)
T ss_pred c-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-----CC-cEEEEeCCHHHHHHHhhh
Confidence 2 2233679999999999999999999999999999999999999999998876 46 99999999999976 999
Q ss_pred EEEEeCCEEEE-EcChHHHhh
Q 020527 289 IVVIDDGRIIE-VGNHAELLH 308 (325)
Q Consensus 289 v~~l~~G~i~~-~g~~~~l~~ 308 (325)
|+.++.|++.. .|+.+..+.
T Consensus 220 I~~ld~g~l~~y~Gny~~~~~ 240 (530)
T COG0488 220 ILELDRGKLTPYKGNYSSYLE 240 (530)
T ss_pred eEEecCCceeEecCCHHHHHH
Confidence 99999999865 456665544
No 353
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7.7e-40 Score=291.06 Aligned_cols=202 Identities=27% Similarity=0.441 Sum_probs=157.4
Q ss_pred CCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEc-cCCcCc-cccH
Q 020527 95 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG-QEPQLL-QMDI 172 (325)
Q Consensus 95 ~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~-Q~~~l~-~~tv 172 (325)
.++++|+||+|++|++++++|||||||||++|+|.|++.|++|.|.++|.+.-. ..++.-+++++|+ |..++. ...+
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~-~~~~~~~~~~~v~gqk~ql~Wdlp~ 115 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR-RREEYLRSIGLVMGQKLQLWWDLPA 115 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcch-hHHHHHHHHHHHhhhhheeeeechh
Confidence 458999999999999999999999999999999999999999999999987543 2334445677776 444443 3334
Q ss_pred HHHHh-----cCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCC
Q 020527 173 KSNIM-----YGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSA 247 (325)
Q Consensus 173 ~enl~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~ 247 (325)
.|-+. +..+.....++.....+..+++.++... ...||-|||.|+.||.||+++|+||+|||||-|
T Consensus 116 ~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~---------vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvg 186 (325)
T COG4586 116 LDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWP---------VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVG 186 (325)
T ss_pred hhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhh---------hhhccchHHHHHHHHHHhcCCCcEEEecCCccC
Confidence 33332 1111111122333333444444443322 256999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527 248 LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 308 (325)
Q Consensus 248 LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 308 (325)
||..++..+.+.+++..++ .+.||+++||+++.+.. ||||+.|+.|+++.+|+..++..
T Consensus 187 LDV~aq~~ir~Flke~n~~--~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~ 246 (325)
T COG4586 187 LDVNAQANIREFLKEYNEE--RQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQE 246 (325)
T ss_pred cchhHHHHHHHHHHHHHHh--hCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHH
Confidence 9999999999999999874 58999999999998865 99999999999999999888754
No 354
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=5e-39 Score=277.21 Aligned_cols=155 Identities=30% Similarity=0.417 Sum_probs=125.9
Q ss_pred CCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHH
Q 020527 95 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 174 (325)
Q Consensus 95 ~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~e 174 (325)
+++|+|+||+|++|++++|+||||||||||||++. +++|++.++|.. ... .++.++|++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~-~~~----~~~~~~~~~q----------- 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL-PKF----SRNKLIFIDQ----------- 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc-ccc----ccccEEEEhH-----------
Confidence 46999999999999999999999999999999985 379999998762 111 1345888877
Q ss_pred HHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcc-cccCCCCCChHHHHHHHHHHHHcCC--CCEEEEeCCCCCCCHH
Q 020527 175 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYE-TLVDDDLLSGGQKQRIAIARAILRD--PAILLLDEATSALDSE 251 (325)
Q Consensus 175 nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~LSgGq~QRv~iAral~~~--p~llllDEPts~LD~~ 251 (325)
.+.++..+ .+.. ......+||||||||++||||++.+ |+++||||||++||+.
T Consensus 68 ---------------~~~l~~~~---------L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~ 123 (176)
T cd03238 68 ---------------LQFLIDVG---------LGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQ 123 (176)
T ss_pred ---------------HHHHHHcC---------CCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHH
Confidence 01222222 2211 1122367999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCE
Q 020527 252 SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR 296 (325)
Q Consensus 252 ~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~ 296 (325)
+++.+.+.++++++ .|+|||++||+++.+..||++++|++|+
T Consensus 124 ~~~~l~~~l~~~~~---~g~tvIivSH~~~~~~~~d~i~~l~~g~ 165 (176)
T cd03238 124 DINQLLEVIKGLID---LGNTVILIEHNLDVLSSADWIIDFGPGS 165 (176)
T ss_pred HHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHhCCEEEEECCCC
Confidence 99999999999864 4889999999999887799999997654
No 355
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=5e-39 Score=349.66 Aligned_cols=216 Identities=25% Similarity=0.420 Sum_probs=172.0
Q ss_pred cEEEEEEEEECCCC----------CCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC--CCCeEEECCEeC
Q 020527 79 HVQFVNISFHYPSR----------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP--SDGQIYIDGFPL 146 (325)
Q Consensus 79 ~i~~~~v~~~y~~~----------~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~--~~G~I~i~g~~i 146 (325)
.+.++||++..+.+ ..+.+|+|||+++++|++++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 48999999987421 123699999999999999999999999999999999999763 789999999875
Q ss_pred CCCCHHHHhcceEEEccCCcCc-cccHHHHHhcCC----CCCCCHH----HHHHHHHHcCHHHHHHhCCCCcccccCCCC
Q 020527 147 TDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGC----PKDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDL 217 (325)
Q Consensus 147 ~~~~~~~~r~~i~~v~Q~~~l~-~~tv~enl~~~~----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (325)
. ...+++.+||++|++.++ ..||+||+.++. +.....+ .+.+.++..++.+..+... |. .....
T Consensus 947 ~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~v-g~---~~~~~ 1019 (1470)
T PLN03140 947 K---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIV-GL---PGVTG 1019 (1470)
T ss_pred C---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCcc-CC---CCCCC
Confidence 4 234567899999998777 589999998742 1111211 2344555555544433221 10 01246
Q ss_pred CChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchH-H-HhcCEEEEEeC-
Q 020527 218 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST-I-KAVDRIVVIDD- 294 (325)
Q Consensus 218 LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~-~-~~~d~v~~l~~- 294 (325)
|||||||||+|||+|+.+|++|+|||||+|||+.++..+++.|+++++ .|+|||+++|+++. + ..||++++|++
T Consensus 1020 LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~---~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140 1020 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD---TGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence 999999999999999999999999999999999999999999999975 48899999999984 4 56999999996
Q ss_pred CEEEEEcChH
Q 020527 295 GRIIEVGNHA 304 (325)
Q Consensus 295 G~i~~~g~~~ 304 (325)
|+++..|++.
T Consensus 1097 G~~v~~G~~~ 1106 (1470)
T PLN03140 1097 GQVIYSGPLG 1106 (1470)
T ss_pred CEEEEECCcc
Confidence 8999999864
No 356
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=9.4e-40 Score=329.37 Aligned_cols=191 Identities=23% Similarity=0.264 Sum_probs=153.4
Q ss_pred EEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEE-----------ECCEeCCCCCHH-
Q 020527 85 ISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY-----------IDGFPLTDLDIR- 152 (325)
Q Consensus 85 v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~-----------i~g~~i~~~~~~- 152 (325)
++++|+.+ ..+|++++ .+++||++||+||||||||||+|+|+|+++|++|+|. ++|+++..+...
T Consensus 79 ~~~~yg~~--~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~ 155 (590)
T PRK13409 79 PVHRYGVN--GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL 155 (590)
T ss_pred ceEEecCC--ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence 88999753 35999999 8999999999999999999999999999999999998 899887543211
Q ss_pred -HHhcceEEEcc----CCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 020527 153 -WLREKIGFVGQ----EPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 227 (325)
Q Consensus 153 -~~r~~i~~v~Q----~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~ 227 (325)
..+.++++.+| .|.+|.+||.||+... ...+.+.++++..++....++.. .+|||||||||+
T Consensus 156 ~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~----~~~~~~~~~l~~l~l~~~~~~~~---------~~LSgGe~qrv~ 222 (590)
T PRK13409 156 YNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV----DERGKLDEVVERLGLENILDRDI---------SELSGGELQRVA 222 (590)
T ss_pred hccCcceeecccchhhhhhhhcchHHHHHHhh----hHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHH
Confidence 11233555555 4555667999999742 11234455555555544433332 579999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCC
Q 020527 228 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG 295 (325)
Q Consensus 228 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G 295 (325)
|||||+.+|++|||||||++||+.++..+.+.|+++. + |+|||+||||++.+.. ||+|++|+++
T Consensus 223 ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~---~-g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 223 IAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELA---E-GKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH---C-CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999999985 3 7899999999999865 9999999873
No 357
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.6e-38 Score=278.71 Aligned_cols=192 Identities=27% Similarity=0.417 Sum_probs=158.7
Q ss_pred CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHH
Q 020527 94 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIK 173 (325)
Q Consensus 94 ~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~ 173 (325)
..++|+||||++++||.+||+|+||||||||+|+|+|.++|++|+|.++|+--.-+. -..|+- .+.|.+
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~-----lg~Gf~------pelTGr 107 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIE-----LGAGFD------PELTGR 107 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhh-----cccCCC------cccchH
Confidence 357999999999999999999999999999999999999999999999996421111 112221 247999
Q ss_pred HHHhc-----CCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCC
Q 020527 174 SNIMY-----GCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSAL 248 (325)
Q Consensus 174 enl~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~L 248 (325)
||+.+ |......++...+..+-+.+.++++..- .++|.||+-|+++|-|...+|+|||+||..+..
T Consensus 108 eNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~Pv---------ktYSSGM~aRLaFsia~~~~pdILllDEvlavG 178 (249)
T COG1134 108 ENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPV---------KTYSSGMYARLAFSVATHVEPDILLLDEVLAVG 178 (249)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCch---------hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcC
Confidence 99854 3222223444555666667777766533 569999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527 249 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 308 (325)
Q Consensus 249 D~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 308 (325)
|+.-+++-.+.+.++.+ +++|+|+||||++.++. |||+++|++|++...|+++++..
T Consensus 179 D~~F~~K~~~rl~e~~~---~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~ 236 (249)
T COG1134 179 DAAFQEKCLERLNELVE---KNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236 (249)
T ss_pred CHHHHHHHHHHHHHHHH---cCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHH
Confidence 99999999999999864 36899999999999975 99999999999999999999875
No 358
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=7.4e-39 Score=348.77 Aligned_cols=205 Identities=21% Similarity=0.286 Sum_probs=161.8
Q ss_pred CCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCC----CCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-c
Q 020527 95 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY----EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-Q 169 (325)
Q Consensus 95 ~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~----~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~ 169 (325)
+++|+|+|+++++||+++|+||||||||||||+|+|+. +|.+|+|.+||+++.+.. ...|+.++|++|++.++ .
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence 46999999999999999999999999999999999986 579999999999875432 33566799999998877 5
Q ss_pred ccHHHHHhcCCC----C----CCCHHHHHHHHHHcCHHHHHHhCCCC--cccccC---CCCCChHHHHHHHHHHHHcCCC
Q 020527 170 MDIKSNIMYGCP----K----DVKNEDIEWAAKQAYVHEFILSLPCG--YETLVD---DDLLSGGQKQRIAIARAILRDP 236 (325)
Q Consensus 170 ~tv~enl~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~LSgGq~QRv~iAral~~~p 236 (325)
.||+||+.|+.. . ....++..+. ..+..++.+... .++.++ ...|||||||||+|||||+.+|
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p 228 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKH----IADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGA 228 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHH----HHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCC
Confidence 899999987521 0 1111111100 011223332221 122222 2569999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCc-hHH-HhcCEEEEEeCCEEEEEcChHHH
Q 020527 237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL-STI-KAVDRIVVIDDGRIIEVGNHAEL 306 (325)
Q Consensus 237 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~-~~~-~~~d~v~~l~~G~i~~~g~~~~l 306 (325)
++++|||||+|||+.++..+.+.|++++++ .|+|+|+++|++ +.+ ..+|+|++|++|+++..|+++++
T Consensus 229 ~vlllDEPTsgLD~~~~~~i~~~L~~la~~--~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~ 298 (1394)
T TIGR00956 229 KIQCWDNATRGLDSATALEFIRALKTSANI--LDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKA 298 (1394)
T ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHHHHHh--cCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHH
Confidence 999999999999999999999999999753 488999999997 455 45999999999999999999876
No 359
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=3.4e-38 Score=323.63 Aligned_cols=221 Identities=22% Similarity=0.297 Sum_probs=159.3
Q ss_pred ccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCC---CCCCCeEEECCEeCCCC--CH-
Q 020527 78 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY---EPSDGQIYIDGFPLTDL--DI- 151 (325)
Q Consensus 78 ~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~---~~~~G~I~i~g~~i~~~--~~- 151 (325)
..|+++|++|+|+++ .+|+|+||+|++|+++||+||||||||||||+|+|.. .|++|+|.+.++++... +.
T Consensus 176 ~~I~i~nls~~y~~~---~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~ 252 (718)
T PLN03073 176 KDIHMENFSISVGGR---DLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTAL 252 (718)
T ss_pred eeEEEceEEEEeCCC---EEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHH
Confidence 359999999999753 5999999999999999999999999999999999864 57899998766543211 11
Q ss_pred -----------HHHhcceEEEccCCcCccccHHHHHhcCCCCCCC----HHHHHHHHHHcC----------HHHHHHhCC
Q 020527 152 -----------RWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVK----NEDIEWAAKQAY----------VHEFILSLP 206 (325)
Q Consensus 152 -----------~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~----~~~~~~~~~~~~----------~~~~~~~~~ 206 (325)
..+++.+++++|++.+...++.+|.......... .+++.++.+..+ +...+..+.
T Consensus 253 ~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lg 332 (718)
T PLN03073 253 QCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLS 332 (718)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCC
Confidence 1124458889988765433333333221110001 112222222221 223344433
Q ss_pred CC-cccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh
Q 020527 207 CG-YETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA 285 (325)
Q Consensus 207 ~~-~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~ 285 (325)
.. ........+|||||||||+|||||+.+|++|||||||++||+.+...+.+.|+++ +.|+|+||||++.+..
T Consensus 333 l~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~------~~tviivsHd~~~l~~ 406 (718)
T PLN03073 333 FTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW------PKTFIVVSHAREFLNT 406 (718)
T ss_pred CChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc------CCEEEEEECCHHHHHH
Confidence 21 1112223679999999999999999999999999999999999999999999876 4699999999999865
Q ss_pred -cCEEEEEeCCEEE-EEcChHHHh
Q 020527 286 -VDRIVVIDDGRII-EVGNHAELL 307 (325)
Q Consensus 286 -~d~v~~l~~G~i~-~~g~~~~l~ 307 (325)
||++++|++|++. ..|+.+.+.
T Consensus 407 ~~d~i~~l~~g~i~~~~g~~~~~~ 430 (718)
T PLN03073 407 VVTDILHLHGQKLVTYKGDYDTFE 430 (718)
T ss_pred hCCEEEEEECCEEEEeCCCHHHHH
Confidence 9999999999996 567766544
No 360
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-38 Score=264.63 Aligned_cols=227 Identities=25% Similarity=0.418 Sum_probs=173.4
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCE-----eCCCCCHHH
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF-----PLTDLDIRW 153 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~-----~i~~~~~~~ 153 (325)
-+++.++++.|++. ...+||||++.|||+.+|+|+|||||||||++|++-+.|++|+|.+.-. ++-.++..+
T Consensus 6 LL~V~~lsk~Yg~~---~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 6 LLSVSGLSKLYGPG---KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred ceeehhhhhhhCCC---cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence 48999999999864 5899999999999999999999999999999999999999999999652 222333222
Q ss_pred ----HhcceEEEccCCcC-cc------ccHHHHHh-cCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccc-cCCCCCCh
Q 020527 154 ----LREKIGFVGQEPQL-LQ------MDIKSNIM-YGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETL-VDDDLLSG 220 (325)
Q Consensus 154 ----~r~~i~~v~Q~~~l-~~------~tv~enl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~LSg 220 (325)
+|...|+|.|+|.- +. .+|-|-++ .|. ++.. .+.. ...+++++........ -.+..+||
T Consensus 83 RR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~-RHYG--~iR~-----~a~~WL~~VEI~~~RiDD~PrtFSG 154 (258)
T COG4107 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGA-RHYG--NIRA-----EAQDWLEEVEIDLDRIDDLPRTFSG 154 (258)
T ss_pred HHHHhhhccceeecCccccceeeeccCCccchhHHhhhh-hhhh--hHHH-----HHHHHHHhcccCcccccCcccccch
Confidence 35569999999942 22 23333332 221 1111 1111 1123343332221111 11357999
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEE
Q 020527 221 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIE 299 (325)
Q Consensus 221 Gq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~ 299 (325)
|++||+.|||-|+..|+++++||||.|||...+.+++++++.+..+ -+.++++||||+..++. +||.++|++|++++
T Consensus 155 GMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~--l~la~viVTHDl~VarLla~rlmvmk~g~vve 232 (258)
T COG4107 155 GMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRE--LGLAVVIVTHDLAVARLLADRLMVMKQGQVVE 232 (258)
T ss_pred HHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHh--cCceEEEEechhHHHHHhhhcceeecCCCEec
Confidence 9999999999999999999999999999999999999999999875 58899999999999986 99999999999999
Q ss_pred EcChHHHhhc-CHHHHHHHH
Q 020527 300 VGNHAELLHK-GRLYAKLVK 318 (325)
Q Consensus 300 ~g~~~~l~~~-~~~~~~~~~ 318 (325)
.|-.+.++.. ..-|.+++-
T Consensus 233 ~GLTDrvLDDP~hPYTQLLV 252 (258)
T COG4107 233 SGLTDRVLDDPHHPYTQLLV 252 (258)
T ss_pred cccccccccCCCCchHHHHH
Confidence 9999988875 445766654
No 361
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=4.3e-38 Score=342.36 Aligned_cols=208 Identities=22% Similarity=0.371 Sum_probs=164.6
Q ss_pred CCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCC---CCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cc
Q 020527 95 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QM 170 (325)
Q Consensus 95 ~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~ 170 (325)
+.+|+|+|+.|++||+++|+||||||||||||+|+|+++|+ +|+|.+||.++.+.. .++.++|++|++.++ .+
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEecccccCCCcC
Confidence 46999999999999999999999999999999999999998 999999999886542 267899999998777 58
Q ss_pred cHHHHHhcCCCCC-----------CCHHH----------HHHHHHH---------cCHHHHHHhCCCCc--ccccC---C
Q 020527 171 DIKSNIMYGCPKD-----------VKNED----------IEWAAKQ---------AYVHEFILSLPCGY--ETLVD---D 215 (325)
Q Consensus 171 tv~enl~~~~~~~-----------~~~~~----------~~~~~~~---------~~~~~~~~~~~~~~--~~~~~---~ 215 (325)
||+||+.|+.... ...++ +....+. ...+..++.+.... ++.++ .
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 9999998742100 00000 0000000 01234555544322 23232 2
Q ss_pred CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCch-HH-HhcCEEEEEe
Q 020527 216 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS-TI-KAVDRIVVID 293 (325)
Q Consensus 216 ~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~-~~-~~~d~v~~l~ 293 (325)
..|||||||||+||++|+.+|+++++||||+|||+.++.++.+.|+++++. .|+|+|+++|++. .+ ..||+|++|+
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~--~g~Tviis~Hqp~~~i~~lfD~vilL~ 412 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHL--TEATVLMSLLQPAPETFDLFDDIILLS 412 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHh--cCCEEEEEecCCCHHHHHHhheEEEee
Confidence 579999999999999999999999999999999999999999999999753 4789999999974 55 4599999999
Q ss_pred CCEEEEEcChHHHh
Q 020527 294 DGRIIEVGNHAELL 307 (325)
Q Consensus 294 ~G~i~~~g~~~~l~ 307 (325)
+|+++..|+++++.
T Consensus 413 ~G~ivy~G~~~~~~ 426 (1470)
T PLN03140 413 EGQIVYQGPRDHIL 426 (1470)
T ss_pred CceEEEeCCHHHHH
Confidence 99999999988775
No 362
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.7e-37 Score=311.35 Aligned_cols=219 Identities=32% Similarity=0.499 Sum_probs=177.3
Q ss_pred cEEEEEEEEECCCCC--CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC---CCCeEEECCEeCCCCCHHH
Q 020527 79 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP---SDGQIYIDGFPLTDLDIRW 153 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~--~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~---~~G~I~i~g~~i~~~~~~~ 153 (325)
.+.++|++...+++. .+++|+|||.++++||++||+|||||||||||++|+|-.+. .+|+|.+||++. +.+.
T Consensus 25 ~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~---~~~~ 101 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPR---DSRS 101 (613)
T ss_pred eeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccC---chhh
Confidence 488999998876542 36899999999999999999999999999999999999874 799999999653 3466
Q ss_pred HhcceEEEccCCcCc-cccHHHHHhcCC----CCCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHH
Q 020527 154 LREKIGFVGQEPQLL-QMDIKSNIMYGC----PKDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 224 (325)
Q Consensus 154 ~r~~i~~v~Q~~~l~-~~tv~enl~~~~----~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~Q 224 (325)
+++.+|||.|+..++ ..||+|++.|.. +.... ++++++..+..++....+....+. ....+|||||+
T Consensus 102 ~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~----~~rgiSGGErk 177 (613)
T KOG0061|consen 102 FRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNP----GIRGLSGGERK 177 (613)
T ss_pred hhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCC----CCCccccchhh
Confidence 788999999999988 589999997642 21111 233444444444443322221100 01469999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchH-H-HhcCEEEEEeCCEEEEEcC
Q 020527 225 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST-I-KAVDRIVVIDDGRIIEVGN 302 (325)
Q Consensus 225 Rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~-~-~~~d~v~~l~~G~i~~~g~ 302 (325)
||+||.-|+.+|.||++||||+|||..++.++.+.|+++++ +|+|||++-|.++. + ...|++++|.+|+++..|+
T Consensus 178 Rvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~---~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~ 254 (613)
T KOG0061|consen 178 RVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLAR---SGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGS 254 (613)
T ss_pred HHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHh---CCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecC
Confidence 99999999999999999999999999999999999999986 39999999999973 3 5699999999999999999
Q ss_pred hHHHh
Q 020527 303 HAELL 307 (325)
Q Consensus 303 ~~~l~ 307 (325)
++++.
T Consensus 255 ~~~~~ 259 (613)
T KOG0061|consen 255 PRELL 259 (613)
T ss_pred HHHHH
Confidence 98764
No 363
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-38 Score=264.37 Aligned_cols=189 Identities=24% Similarity=0.391 Sum_probs=157.3
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 159 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~ 159 (325)
++.+|++...+. ..++.++||++.+||.+-|.||||||||||||+|+|+.+|++|+|+|+|.++.... +..++.+-
T Consensus 3 L~a~~L~~~R~e---~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~-~~~~~~l~ 78 (209)
T COG4133 3 LEAENLSCERGE---RTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ESYHQALL 78 (209)
T ss_pred chhhhhhhccCc---ceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccch-hhHHHHHH
Confidence 678899887764 36999999999999999999999999999999999999999999999999887543 33467788
Q ss_pred EEccCCcCc-cccHHHHHhcCCC--CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 020527 160 FVGQEPQLL-QMDIKSNIMYGCP--KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 236 (325)
Q Consensus 160 ~v~Q~~~l~-~~tv~enl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p 236 (325)
|+-..+-+- .+|++||+.|... .......+.+++..+++..+.+ +| ..+||-|||+||+|||-++..+
T Consensus 79 yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~d-lp--------~~~LSAGQqRRvAlArL~ls~~ 149 (209)
T COG4133 79 YLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLED-LP--------VGQLSAGQQRRVALARLWLSPA 149 (209)
T ss_pred HhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccc-cc--------hhhcchhHHHHHHHHHHHcCCC
Confidence 998888775 6899999987421 1123566777888877765433 23 2579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH
Q 020527 237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK 284 (325)
Q Consensus 237 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~ 284 (325)
+++||||||++||......+-.++....+ +|-.||.+||....+.
T Consensus 150 pLWiLDEP~taLDk~g~a~l~~l~~~H~~---~GGiVllttHq~l~~~ 194 (209)
T COG4133 150 PLWILDEPFTALDKEGVALLTALMAAHAA---QGGIVLLTTHQPLPIA 194 (209)
T ss_pred CceeecCcccccCHHHHHHHHHHHHHHhc---CCCEEEEecCCccCCC
Confidence 99999999999999999999999988765 4668999999875543
No 364
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=1e-35 Score=293.46 Aligned_cols=268 Identities=22% Similarity=0.292 Sum_probs=217.8
Q ss_pred hHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCC----CCccccccc-cc---cCCc
Q 020527 6 GGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLP----SNQFLSEGV-KL---QRLM 77 (325)
Q Consensus 6 g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~----~~~~~~~~~-~~---~~~~ 77 (325)
++-..+.|+++.|.+......+..+...+.-+...+..+..-.+...|+.++...-. +...+.+.. .. ....
T Consensus 311 ~ap~~f~g~i~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~ 390 (604)
T COG4178 311 AAPRYFSGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNAD 390 (604)
T ss_pred ccHhhhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCccccccccccccc
Confidence 344567899999999988888889999999999999999999999999998864321 110111100 00 1012
Q ss_pred ccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 020527 78 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 157 (325)
Q Consensus 78 ~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~ 157 (325)
..|+++|++..-++. ...+++.||+|++||.+.|.||||||||||+|+|+|+.|.-+|+|.+-. -..
T Consensus 391 ~~i~~~nl~l~~p~~--~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~ 457 (604)
T COG4178 391 HGITLENLSLRTPDG--QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSA 457 (604)
T ss_pred ceeEEeeeeEECCCC--CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCc
Confidence 469999999998764 3799999999999999999999999999999999999999999886531 135
Q ss_pred eEEEccCCcCccccHHHHHhcCCCC-CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 020527 158 IGFVGQEPQLLQMDIKSNIMYGCPK-DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 236 (325)
Q Consensus 158 i~~v~Q~~~l~~~tv~enl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p 236 (325)
+-|+||.|++..+|.+|-|+++... ...++++.+++.++++.++.+++.... . -...||+|||||+++||.|+++|
T Consensus 458 ~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~-~--W~~vLS~GEqQRlafARilL~kP 534 (604)
T COG4178 458 LLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEED-R--WDRVLSGGEQQRLAFARLLLHKP 534 (604)
T ss_pred eEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccC-c--HhhhcChhHHHHHHHHHHHHcCC
Confidence 8999999999999999999998644 367888999999999999998865221 1 12469999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEe
Q 020527 237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVID 293 (325)
Q Consensus 237 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~ 293 (325)
++++|||.||+||+.++..+.+.+++-. .+.|||-|.|+.......++.+-+.
T Consensus 535 ~~v~LDEATsALDe~~e~~l~q~l~~~l----p~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 535 KWVFLDEATSALDEETEDRLYQLLKEEL----PDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred CEEEEecchhccChHHHHHHHHHHHhhC----CCCEEEEeccchhhHHHHhhheeec
Confidence 9999999999999999999999997742 4789999999998877766655553
No 365
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=2.2e-36 Score=317.44 Aligned_cols=215 Identities=22% Similarity=0.406 Sum_probs=181.5
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCC-CHHHHhcc
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL-DIRWLREK 157 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~-~~~~~r~~ 157 (325)
.+.++|+++.|+.+. .+++++|+.|++||+.|+.|+|||||||++++|.|..+|++|+++++|.++... +....++.
T Consensus 564 ~~~~~~L~k~y~~~~--~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~ 641 (885)
T KOG0059|consen 564 ALVLNNLSKVYGGKD--GAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQ 641 (885)
T ss_pred eEEEcceeeeecchh--hhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhh
Confidence 589999999998652 299999999999999999999999999999999999999999999999998653 23347889
Q ss_pred eEEEccCCcCc-cccHHHHHhcC-CCCCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 020527 158 IGFVGQEPQLL-QMDIKSNIMYG-CPKDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 231 (325)
Q Consensus 158 i~~v~Q~~~l~-~~tv~enl~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 231 (325)
+||+||...++ .+|.+|.+.+- +-+... .+.+...++..++.+..+. ..+.+|||+|+|+++|-|
T Consensus 642 iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~---------~~~~ySgG~kRkLs~aia 712 (885)
T KOG0059|consen 642 LGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANK---------QVRTYSGGNKRRLSFAIA 712 (885)
T ss_pred cccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhcc---------chhhCCCcchhhHHHHHH
Confidence 99999999988 58999999652 111111 2223444444444443333 236799999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHh
Q 020527 232 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 307 (325)
Q Consensus 232 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 307 (325)
++.+|++++|||||+|+||.+++.+.+++.++++ .|+++|++||.+++++. |||+.+|.+|++.+.|+++++-
T Consensus 713 lig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k---~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LK 786 (885)
T KOG0059|consen 713 LIGDPSVILLDEPSTGLDPKARRHLWDIIARLRK---NGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELK 786 (885)
T ss_pred HhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHh---cCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHH
Confidence 9999999999999999999999999999999986 35699999999999986 9999999999999999999884
No 366
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-35 Score=274.47 Aligned_cols=266 Identities=26% Similarity=0.299 Sum_probs=210.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEEEEEEEEECCCCCCCCcee
Q 020527 20 LTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILN 99 (325)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~iL~ 99 (325)
.+.+.+..-.+-.|+.+++..+..+..+.+|++++.++-..|+....+. .... +....|+++||.|.|.... -=+.
T Consensus 265 a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~~~~-~q~~-p~~~~lelrnvrfay~~~~--Fhvg 340 (546)
T COG4615 265 AATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFPR-PQAF-PDWKTLELRNVRFAYQDNA--FHVG 340 (546)
T ss_pred HHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccccCCC-CCcC-CcccceeeeeeeeccCccc--ceec
Confidence 3345555556678899999999999999999999998766544332221 1111 1234699999999997542 4578
Q ss_pred eeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcC
Q 020527 100 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYG 179 (325)
Q Consensus 100 ~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~ 179 (325)
.||++|++||++-|+|.||||||||++++.|+++|++|+|++||+++..-+++++|+-++-||-|.++|+.++ +
T Consensus 341 PiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~ 414 (546)
T COG4615 341 PINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------G 414 (546)
T ss_pred ceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------C
Confidence 9999999999999999999999999999999999999999999999998888999999999999999996543 2
Q ss_pred CCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHH
Q 020527 180 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV 259 (325)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~ 259 (325)
.......+.+...+++..+.....-.. + ....-.||.|||+|+++--|++-+.+|+++||=-+--||.-++.+...
T Consensus 415 ~e~~as~q~i~~~LqrLel~~ktsl~d-~---~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~ 490 (546)
T COG4615 415 PEGKASPQLIEKWLQRLELAHKTSLND-G---RFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQV 490 (546)
T ss_pred CccCCChHHHHHHHHHHHHhhhhcccC-C---cccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHH
Confidence 112244556666666655544322111 1 111235999999999999999999999999999999999999999887
Q ss_pred HHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEc
Q 020527 260 LHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 301 (325)
Q Consensus 260 l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g 301 (325)
+.-+-++ .|+||+.||||-.-...|||++.|++|++++..
T Consensus 491 lLp~LK~--qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 491 LLPLLKE--QGKTIFAISHDDHYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred HhHHHHH--hCCeEEEEecCchhhhhHHHHHHHhcCceeecc
Confidence 6555443 699999999998888899999999999998854
No 367
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=8.7e-35 Score=287.55 Aligned_cols=200 Identities=29% Similarity=0.441 Sum_probs=163.3
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.++++|++++|++. +.+++++||.|.+|+.+||+||||+|||||||+|+|...|.+|+|.+.-. -++
T Consensus 321 vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-----------v~i 387 (530)
T COG0488 321 VLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-----------VKI 387 (530)
T ss_pred eEEEeccccccCCC--ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-----------eEE
Confidence 59999999999753 47999999999999999999999999999999999999999999987531 259
Q ss_pred EEEccCCc-Cc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 020527 159 GFVGQEPQ-LL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 236 (325)
Q Consensus 159 ~~v~Q~~~-l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p 236 (325)
||++|+.. ++ ..|+.|++.-..+ ......+...+..+++..-....+ ...||||||-|+.||+.++.+|
T Consensus 388 gyf~Q~~~~l~~~~t~~d~l~~~~~-~~~e~~~r~~L~~f~F~~~~~~~~--------v~~LSGGEk~Rl~La~ll~~~p 458 (530)
T COG0488 388 GYFDQHRDELDPDKTVLEELSEGFP-DGDEQEVRAYLGRFGFTGEDQEKP--------VGVLSGGEKARLLLAKLLLQPP 458 (530)
T ss_pred EEEEehhhhcCccCcHHHHHHhhCc-cccHHHHHHHHHHcCCChHHHhCc--------hhhcCHhHHHHHHHHHHhccCC
Confidence 99999983 44 4699999975422 222445555665555433222222 2569999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEE-cChHHHh
Q 020527 237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEV-GNHAELL 307 (325)
Q Consensus 237 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~-g~~~~l~ 307 (325)
.+|||||||+.||..+...+.+.|..+ .| |||+||||..++.. |++++.+++ ++... |+.++..
T Consensus 459 NvLiLDEPTNhLDi~s~~aLe~aL~~f-----~G-tvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~ 524 (530)
T COG0488 459 NLLLLDEPTNHLDIESLEALEEALLDF-----EG-TVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYL 524 (530)
T ss_pred CEEEEcCCCccCCHHHHHHHHHHHHhC-----CC-eEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHH
Confidence 999999999999999999999999988 24 99999999999976 999999998 66555 6665543
No 368
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=4.9e-35 Score=262.67 Aligned_cols=192 Identities=26% Similarity=0.351 Sum_probs=126.6
Q ss_pred CCceeeeeEEeeCCcEEEEEcCCCChHHHHH-HHHHcCCCCCCCeEEECC-------EeCCCC---CHHHHh-cceEEEc
Q 020527 95 VPILNHVCLTIEANEVVAIVGLSGSGKSTFV-NLLLRLYEPSDGQIYIDG-------FPLTDL---DIRWLR-EKIGFVG 162 (325)
Q Consensus 95 ~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl-~~l~gl~~~~~G~I~i~g-------~~i~~~---~~~~~r-~~i~~v~ 162 (325)
..+|+++||+|++||+++|+||||||||||+ ..+. .+|++.+.. ..+... .....+ ...++..
T Consensus 8 ~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (226)
T cd03270 8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAI 82 (226)
T ss_pred hhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCceEEe
Confidence 4699999999999999999999999999996 4443 134432211 000000 001111 2244555
Q ss_pred cCCcC-c-c-ccHH---HHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCc-ccccCCCCCChHHHHHHHHHHHHcCC
Q 020527 163 QEPQL-L-Q-MDIK---SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGY-ETLVDDDLLSGGQKQRIAIARAILRD 235 (325)
Q Consensus 163 Q~~~l-~-~-~tv~---enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~LSgGq~QRv~iAral~~~ 235 (325)
|++.. + + .++. +...+.... ...... .+. .+.++.+.... .......+||||||||++|||||+.+
T Consensus 83 ~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~---~~~---~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~ 155 (226)
T cd03270 83 DQKTTSRNPRSTVGTVTEIYDYLRLL-FARVGI---RER---LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSG 155 (226)
T ss_pred cCCCCCCCCCccHHHHHHHHHHHHHH-hhhhhH---HHH---HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhC
Confidence 54432 1 1 2332 221110000 000000 011 12344443322 12233468999999999999999999
Q ss_pred C--CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEE------eCCEEEEEc
Q 020527 236 P--AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI------DDGRIIEVG 301 (325)
Q Consensus 236 p--~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l------~~G~i~~~g 301 (325)
| ++|||||||++||+.++..+.+.++++++ .|.|+|++|||++.+..||++++| ++|+|+++|
T Consensus 156 p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~---~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 156 LTGVLYVLDEPSIGLHPRDNDRLIETLKRLRD---LGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CCCCEEEEeCCccCCCHHHHHHHHHHHHHHHh---CCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 8 59999999999999999999999999864 478999999999988779999999 999999875
No 369
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-35 Score=246.79 Aligned_cols=205 Identities=29% Similarity=0.436 Sum_probs=153.6
Q ss_pred cEEEEEEEEECCC----CCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCE----eCCCCC
Q 020527 79 HVQFVNISFHYPS----RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF----PLTDLD 150 (325)
Q Consensus 79 ~i~~~~v~~~y~~----~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~----~i~~~~ 150 (325)
.+.++|++|+|.- ...-++++++||+++.||++++-||||||||||||+|.|-|.|++|+|++.-. |+....
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 4789999998831 11247999999999999999999999999999999999999999999998532 222222
Q ss_pred HH----HHhcceEEEccCCcCc-cccHHHHHhc-----CCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCCh
Q 020527 151 IR----WLREKIGFVGQEPQLL-QMDIKSNIMY-----GCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSG 220 (325)
Q Consensus 151 ~~----~~r~~i~~v~Q~~~l~-~~tv~enl~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSg 220 (325)
+. -.|+.||||+|.-... ..+..|.++- |.+......+....+.+..+.+.+-.+ .+..+||
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~L--------aPaTFSG 155 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSL--------APATFSG 155 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcC--------CCcccCC
Confidence 22 2356799999975443 4455555543 222111112222233333333333222 2467999
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeC
Q 020527 221 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD 294 (325)
Q Consensus 221 Gq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~ 294 (325)
||+|||.|||.++.+-+||||||||++||..++..+.+++.+.+. +|.++|=|-||-+.-+. |||++.|..
T Consensus 156 GEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka---~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 156 GEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKA---RGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred chheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHh---cCceEEEeeccHHHHHHHhhheeeccc
Confidence 999999999999999999999999999999999999999998864 58999999999887765 999988753
No 370
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=100.00 E-value=4.3e-35 Score=242.19 Aligned_cols=136 Identities=43% Similarity=0.679 Sum_probs=113.4
Q ss_pred eeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCcc-ccHHHHH
Q 020527 98 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNI 176 (325)
Q Consensus 98 L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~tv~enl 176 (325)
|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+....++.++|++|++.+++ .|++||.
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~ 80 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENE 80 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 789999999999999999999999999999999999999999999999988666778899999999988884 6799991
Q ss_pred hcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCC
Q 020527 177 MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATS 246 (325)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts 246 (325)
..+++.++++..++.++..... ......||+|||||++|||||+.+|+++|||||||
T Consensus 81 --------~~~~~~~~l~~l~~~~~~~~~~-----~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 81 --------SDERIEEVLKKLGLEDLLDRKI-----GQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp --------HHHHHHHHHHHTTHGGGTGSBG-----TSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred --------cccccccccccccccccccccc-----ccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 1344555666665544322211 11125799999999999999999999999999997
No 371
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=7e-36 Score=250.17 Aligned_cols=212 Identities=22% Similarity=0.365 Sum_probs=173.8
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.++++||...- -|-.+|.++..||++-+|||||||||||+-.++|+.+ .+|+|.++|.++..++..++.++-
T Consensus 3 l~qln~v~~~t-------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~-~sGsi~~~G~~l~~~~~~eLArhR 74 (248)
T COG4138 3 LMQLNDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAGQPLEAWSATELARHR 74 (248)
T ss_pred eeeeccccccc-------cccccccccccceEEEEECCCCccHHHHHHHHhCCCC-CCceEEECCcchhHHhHhHHHHHH
Confidence 36788887542 4778899999999999999999999999999999985 799999999999998888888889
Q ss_pred EEEccCCc-CccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC---
Q 020527 159 GFVGQEPQ-LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR--- 234 (325)
Q Consensus 159 ~~v~Q~~~-l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~--- 234 (325)
+|+.|+.. .|.+.|+.++.+..+.......+.+.....++.+.+- +..++|||||.|||-+|-..++
T Consensus 75 AYLsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~---------Rs~~qLSGGEWQRVRLAav~LQv~P 145 (248)
T COG4138 75 AYLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLG---------RSTNQLSGGEWQRVRLAAVVLQITP 145 (248)
T ss_pred HHHhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccchhh---------hhhhhcCcccceeeEEeEEEEEecC
Confidence 99998764 5789999999886443222223333333333333222 2236799999999999988875
Q ss_pred --C--CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchH-HHhcCEEEEEeCCEEEEEcChHHHhhc
Q 020527 235 --D--PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST-IKAVDRIVVIDDGRIIEVGNHAELLHK 309 (325)
Q Consensus 235 --~--p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~-~~~~d~v~~l~~G~i~~~g~~~~l~~~ 309 (325)
| .++||+|||.++||...+..+-.++.++++ .|.+|||++||++. ++.+|+++.++.|++...|..+++++.
T Consensus 146 d~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~---~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 146 DANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQ---QGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred CCCccceeEEecCCCcchhHHHHHHHHHHHHHHHh---CCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 3 469999999999999999999999999975 59999999999985 577999999999999999999999876
Q ss_pred C
Q 020527 310 G 310 (325)
Q Consensus 310 ~ 310 (325)
+
T Consensus 223 ~ 223 (248)
T COG4138 223 P 223 (248)
T ss_pred H
Confidence 4
No 372
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=100.00 E-value=2.2e-34 Score=253.16 Aligned_cols=164 Identities=24% Similarity=0.333 Sum_probs=127.7
Q ss_pred eeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCC---------CeEEECCEeCCCCCHHHHhcceEEEccCCcCcc
Q 020527 99 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD---------GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ 169 (325)
Q Consensus 99 ~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~---------G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~ 169 (325)
+++++++++| +++|+||||||||||+++|+|+.+|.. |++.++|.++.. ...+++|+|+||++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~vfq~~~~~- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK---PANFAEVTLTFDNSDGR- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC---CCceEEEEEEEEcCCCc-
Confidence 6789999999 999999999999999999999987653 467777776543 12357899999999776
Q ss_pred ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc----CCCCEEEEeCCC
Q 020527 170 MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL----RDPAILLLDEAT 245 (325)
Q Consensus 170 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~----~~p~llllDEPt 245 (325)
|+.. ..+++.++++. . +. .......||||||||++|||+++ .+|+++||||||
T Consensus 89 --------~~~~---~~~~~~~~l~~----------~-~~-~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~ 145 (197)
T cd03278 89 --------YSII---SQGDVSEIIEA----------P-GK-KVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVD 145 (197)
T ss_pred --------eeEE---ehhhHHHHHhC----------C-Cc-cccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCc
Confidence 2210 11223333332 1 11 11223579999999999999996 567999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeC
Q 020527 246 SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 294 (325)
Q Consensus 246 s~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~ 294 (325)
++||+.....+.+.++++++ +.|||++||+++.+..||+++.+..
T Consensus 146 ~~LD~~~~~~l~~~l~~~~~----~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 146 AALDDANVERFARLLKEFSK----ETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred ccCCHHHHHHHHHHHHHhcc----CCEEEEEECCHHHHhhcceEEEEEe
Confidence 99999999999999999853 5799999999998878999999864
No 373
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=9.6e-34 Score=258.29 Aligned_cols=195 Identities=27% Similarity=0.401 Sum_probs=139.4
Q ss_pred CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHH-----c-CC----CCCCC-----------eEEECCEeCCCCC---H
Q 020527 96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL-----R-LY----EPSDG-----------QIYIDGFPLTDLD---I 151 (325)
Q Consensus 96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~-----g-l~----~~~~G-----------~I~i~g~~i~~~~---~ 151 (325)
.-|+|+|++|+.|..++|+|+||||||||++.+. . +. .|..+ -|.+|..++..-+ +
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 3699999999999999999999999999998652 1 11 12211 3666666664321 1
Q ss_pred -------HHHhc----------------ceEEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCC
Q 020527 152 -------RWLRE----------------KIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPC 207 (325)
Q Consensus 152 -------~~~r~----------------~i~~v~Q~~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (325)
..+|+ .+.|..++...+ .+|+.|++.|.... ....+.. ++++.+..
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~-~~~~~~~---------~~L~~vgL 158 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENI-PKIARKL---------QTLCDVGL 158 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhh-hhHHHHH---------HHHHHcCC
Confidence 11111 144555444333 67888887653211 1112222 23344333
Q ss_pred Ccc-cccCCCCCChHHHHHHHHHHHHcCC---CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHH
Q 020527 208 GYE-TLVDDDLLSGGQKQRIAIARAILRD---PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 283 (325)
Q Consensus 208 ~~~-~~~~~~~LSgGq~QRv~iAral~~~---p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~ 283 (325)
++. ......+|||||+||++|||+|+.+ |+++||||||++||+.....+.+.|+++.+ .|.|+|++||+++.+
T Consensus 159 ~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~---~g~tvIiitH~~~~i 235 (261)
T cd03271 159 GYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVD---KGNTVVVIEHNLDVI 235 (261)
T ss_pred chhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHH
Confidence 321 1222367999999999999999996 799999999999999999999999999874 478999999999998
Q ss_pred HhcCEEEEE------eCCEEEEEcCh
Q 020527 284 KAVDRIVVI------DDGRIIEVGNH 303 (325)
Q Consensus 284 ~~~d~v~~l------~~G~i~~~g~~ 303 (325)
..||++++| ++|+|++.|+|
T Consensus 236 ~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 236 KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 889999999 89999999875
No 374
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-32 Score=266.40 Aligned_cols=216 Identities=26% Similarity=0.439 Sum_probs=171.5
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHH-HHhcce
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR-WLREKI 158 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~-~~r~~i 158 (325)
++++|++.. ..++|+||++++||++||.|-=|||+|-|+++|.|..++.+|+|.++|+++.-.++. ..+..|
T Consensus 264 l~v~~l~~~-------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi 336 (500)
T COG1129 264 LEVRNLSGG-------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGI 336 (500)
T ss_pred EEEecCCCC-------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCC
Confidence 566666432 258999999999999999999999999999999999999999999999998766654 678899
Q ss_pred EEEccCCc---Cc-cccHHHHHhcCCCCCCCHH-HHHHHHHHcCHHHHHHhCCCCcccc-cCCCCCChHHHHHHHHHHHH
Q 020527 159 GFVGQEPQ---LL-QMDIKSNIMYGCPKDVKNE-DIEWAAKQAYVHEFILSLPCGYETL-VDDDLLSGGQKQRIAIARAI 232 (325)
Q Consensus 159 ~~v~Q~~~---l~-~~tv~enl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~LSgGq~QRv~iAral 232 (325)
+|||.|.. ++ ..+|.+|+.+......... -+....++...+++..++....... .....||||.+|||.|||.|
T Consensus 337 ~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL 416 (500)
T COG1129 337 AYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWL 416 (500)
T ss_pred EeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHH
Confidence 99999863 55 7899999977521110000 1223333334445555544322111 12357999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHH
Q 020527 233 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAE 305 (325)
Q Consensus 233 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~ 305 (325)
+.+|++|||||||.|.|.-++.+|.++++++++ +|++||++|-++.++. .||||+||++|+++..-+.++
T Consensus 417 ~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~---~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~ 487 (500)
T COG1129 417 ATDPKVLILDEPTRGIDVGAKAEIYRLIRELAA---EGKAILMISSELPELLGLSDRILVMREGRIVGELDREE 487 (500)
T ss_pred hcCCCEEEECCCCcCcccchHHHHHHHHHHHHH---CCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecccc
Confidence 999999999999999999999999999999986 4999999999999885 699999999999988666555
No 375
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.98 E-value=5.3e-32 Score=240.86 Aligned_cols=191 Identities=20% Similarity=0.198 Sum_probs=135.0
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEee-CCcEEEEEcCCCChHHHHHHHHHc-CCCCCCCeEEECCEeCCCCCHHHHhc
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIE-ANEVVAIVGLSGSGKSTFVNLLLR-LYEPSDGQIYIDGFPLTDLDIRWLRE 156 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~-~Ge~~~iiG~nGsGKSTLl~~l~g-l~~~~~G~I~i~g~~i~~~~~~~~r~ 156 (325)
.|+++|+. +|.+. ++++|+.. +|++++|+||||||||||+++|++ ++.+..+....+ .....+.....+.
T Consensus 5 ~i~l~nf~-~y~~~------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~ 76 (213)
T cd03279 5 KLELKNFG-PFREE------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTA 76 (213)
T ss_pred EEEEECCc-CcCCc------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccE
Confidence 48899997 77532 56677654 589999999999999999999995 555555555443 1111122223356
Q ss_pred ceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHH--HHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 020527 157 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEW--AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 234 (325)
Q Consensus 157 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~ 234 (325)
.|+++||++.... ++.. +. ....+.... .+...++.+++++.+ ..|||||+||++||||++.
T Consensus 77 ~v~~~f~~~~~~~-~~~r---~~---gl~~~~~~~~~~l~~g~l~~~l~~~~---------~~lS~G~~~r~~la~al~~ 140 (213)
T cd03279 77 EVSFTFQLGGKKY-RVER---SR---GLDYDQFTRIVLLPQGEFDRFLARPV---------STLSGGETFLASLSLALAL 140 (213)
T ss_pred EEEEEEEECCeEE-EEEE---ec---CCCHHHHHHhhhhhhcchHHHhcCCc---------cccCHHHHHHHHHHHHHHh
Confidence 7999999874321 1111 11 122222222 123333444444333 5799999999999999984
Q ss_pred ----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCE
Q 020527 235 ----------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR 296 (325)
Q Consensus 235 ----------~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~ 296 (325)
+|+++||||||++||+.+...+.+.+.++++ ++.|+|+|||+++.+.. ||+++++++|.
T Consensus 141 ~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~---~~~tii~itH~~~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 141 SEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRT---ENRMVGVISHVEELKERIPQRLEVIKTPG 210 (213)
T ss_pred HHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEECchHHHHhhCcEEEEEecCC
Confidence 6789999999999999999999999999864 37899999999998865 89999999884
No 376
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.98 E-value=2.2e-30 Score=250.13 Aligned_cols=267 Identities=24% Similarity=0.337 Sum_probs=205.8
Q ss_pred CCcCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCC-------------cc--------c
Q 020527 13 GQVSPEQLTKYV----LYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSN-------------QF--------L 67 (325)
Q Consensus 13 g~it~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-------------~~--------~ 67 (325)
+.+|..++...+ .++..+++++..++....++....+-..|+.++.+.-.+. .. .
T Consensus 342 ~~~s~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~ 421 (659)
T KOG0060|consen 342 DDLSPAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLP 421 (659)
T ss_pred CCcCHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCC
Confidence 456666654333 3345556667777777777777777778887765431110 00 0
Q ss_pred cccccccCCcccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCC
Q 020527 68 SEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT 147 (325)
Q Consensus 68 ~~~~~~~~~~~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~ 147 (325)
+...+..+....|++++|+..-|.+ ...+++|+||+|+.|+.+.|.||||||||+|+|.++||.+..+|.+..-.+.-
T Consensus 422 ~G~~~~~~~Dn~i~~e~v~l~tPt~-g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~- 499 (659)
T KOG0060|consen 422 PGSGKAEPADNAIEFEEVSLSTPTN-GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG- 499 (659)
T ss_pred CCCcccccccceEEeeeeeecCCCC-CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC-
Confidence 1001111122359999999998864 34688999999999999999999999999999999999999999997543221
Q ss_pred CCCHHHHhcceEEEccCCcCccccHHHHHhcCCC------CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC---CCCC
Q 020527 148 DLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP------KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD---DDLL 218 (325)
Q Consensus 148 ~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~L 218 (325)
-+.+-|+||.|+.--+|.+|.+.|+.. ....++++.+.++.+++.+++++.. |+++... ...|
T Consensus 500 -------~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~g-gld~~~~~dW~dvL 571 (659)
T KOG0060|consen 500 -------PKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREG-GLDQQVDWDWMDVL 571 (659)
T ss_pred -------CCceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhC-CCCchhhccHHhhc
Confidence 145899999999878999999988731 2345778889999999999998875 6664443 2579
Q ss_pred ChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCC
Q 020527 219 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDG 295 (325)
Q Consensus 219 SgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G 295 (325)
|+||+||+++||-++++|++-+|||.||++|.+.+..+.+.+++. |.|.|-|+|+.+..+.-|.++.|+.+
T Consensus 572 S~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~------giT~iSVgHRkSL~kfHd~~L~~~g~ 642 (659)
T KOG0060|consen 572 SPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM------GITFISVGHRKSLWKFHDYVLRMDGR 642 (659)
T ss_pred CHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc------CCeEEEeccHHHHHhhhhEEEEecCC
Confidence 999999999999999999999999999999999999888888765 89999999999999999999999753
No 377
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.97 E-value=5.6e-32 Score=245.02 Aligned_cols=195 Identities=21% Similarity=0.289 Sum_probs=129.8
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHH----------------cCCCCCCC-----
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL----------------RLYEPSDG----- 137 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~----------------gl~~~~~G----- 137 (325)
.|+++|. ++|++. .++++++ |++++|+||||||||||+++|+ +++.+.+|
T Consensus 3 ~i~~~nf-ksy~~~---~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~ 73 (243)
T cd03272 3 QVIIQGF-KSYKDQ---TVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMS 73 (243)
T ss_pred EEEEeCc-cCcccC---cccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCce
Confidence 3677776 467543 5788876 7899999999999999999998 44556666
Q ss_pred ---eEEECCEeCC-CC--CHHHHhcceEEEccCCcCcc--ccHHHHHhc----CCCCCCCHHHHHHHHHHcCHHHHHHhC
Q 020527 138 ---QIYIDGFPLT-DL--DIRWLREKIGFVGQEPQLLQ--MDIKSNIMY----GCPKDVKNEDIEWAAKQAYVHEFILSL 205 (325)
Q Consensus 138 ---~I~i~g~~i~-~~--~~~~~r~~i~~v~Q~~~l~~--~tv~enl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (325)
+|.+++.+-. .. .....++.+++++|++.++. .|..|...+ +....... . ....-.+.++...
T Consensus 74 ~~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~-~---~~~qg~i~~l~~l- 148 (243)
T cd03272 74 AYVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPY-Y---IVPQGKINSLTNM- 148 (243)
T ss_pred EEEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCc-E---EEEcCchHHhhhc-
Confidence 6666553211 00 11234667899998887764 355554322 11110000 0 0000001111110
Q ss_pred CCCcccccCCCCCChHHHHHHHHHHHHc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCch
Q 020527 206 PCGYETLVDDDLLSGGQKQRIAIARAIL----RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS 281 (325)
Q Consensus 206 ~~~~~~~~~~~~LSgGq~QRv~iAral~----~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~ 281 (325)
. .........||||||||++||||++ .+|+++|+||||++||+.+++.+.+.++++.+ +.++|++||+.+
T Consensus 149 ~--~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~----~~~ii~~~h~~~ 222 (243)
T cd03272 149 K--QDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD----GAQFITTTFRPE 222 (243)
T ss_pred c--ccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC----CCEEEEEecCHH
Confidence 0 0011123579999999999999996 36899999999999999999999999998842 678888899877
Q ss_pred HHHhcCEEEEEe
Q 020527 282 TIKAVDRIVVID 293 (325)
Q Consensus 282 ~~~~~d~v~~l~ 293 (325)
....||++++|.
T Consensus 223 ~~~~~d~i~~l~ 234 (243)
T cd03272 223 LLEVADKFYGVK 234 (243)
T ss_pred HHhhCCEEEEEE
Confidence 666799999985
No 378
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.97 E-value=3.9e-31 Score=240.97 Aligned_cols=199 Identities=15% Similarity=0.233 Sum_probs=137.1
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCC-CCeEEECCE-eCCCCC-H-HHH
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYIDGF-PLTDLD-I-RWL 154 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~-~G~I~i~g~-~i~~~~-~-~~~ 154 (325)
.|+++|. ++|... .++. .+. ..+++|+||||||||||+++|++++.+. .|++.+.+. ++-... . ...
T Consensus 5 ~~~~~~f-~~~~~~---~~~~----~~~-~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~ 75 (251)
T cd03273 5 EIILDGF-KSYATR---TVIS----GFD-PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGIT 75 (251)
T ss_pred EEEEeCc-cccCcC---Eeec----cCC-CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCc
Confidence 3667776 556421 1111 233 4599999999999999999999999886 468888776 432111 1 122
Q ss_pred hcceEEEccCCc---------Cc-cccHHHHHhcCCCC-------CCCHHHHHHHHHHcCHH--------------HHHH
Q 020527 155 REKIGFVGQEPQ---------LL-QMDIKSNIMYGCPK-------DVKNEDIEWAAKQAYVH--------------EFIL 203 (325)
Q Consensus 155 r~~i~~v~Q~~~---------l~-~~tv~enl~~~~~~-------~~~~~~~~~~~~~~~~~--------------~~~~ 203 (325)
+.+|++++|++. +. ..||.+|+..+... ....+++...++.+++. ++++
T Consensus 76 ~~~v~~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~ 155 (251)
T cd03273 76 KASVTIVFDNSDKSQSPIGFENYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLN 155 (251)
T ss_pred EEEEEEEEEcCCcccCcccccCCceEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHH
Confidence 457999999852 22 46888887654211 11223344444444432 0000
Q ss_pred hCCCCcccccCCCCCChHHHHHHHHHHHHc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecC
Q 020527 204 SLPCGYETLVDDDLLSGGQKQRIAIARAIL----RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHR 279 (325)
Q Consensus 204 ~~~~~~~~~~~~~~LSgGq~QRv~iAral~----~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~ 279 (325)
. .........+||+|||||++|||||+ .+|+++|+||||++||+.++..+.+.|+++. +|.|+|++||+
T Consensus 156 ~---~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~----~g~~ii~iSH~ 228 (251)
T cd03273 156 M---GGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF----KGSQFIVVSLK 228 (251)
T ss_pred h---HHhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc----CCCEEEEEECC
Confidence 0 00011223679999999999999997 5889999999999999999999999999884 37799999999
Q ss_pred chHHHhcCEEEEEe
Q 020527 280 LSTIKAVDRIVVID 293 (325)
Q Consensus 280 ~~~~~~~d~v~~l~ 293 (325)
.+..+.||+++-+.
T Consensus 229 ~~~~~~~d~v~~~~ 242 (251)
T cd03273 229 EGMFNNANVLFRTR 242 (251)
T ss_pred HHHHHhCCEEEEEE
Confidence 77778899998775
No 379
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.97 E-value=1.1e-30 Score=231.02 Aligned_cols=165 Identities=22% Similarity=0.311 Sum_probs=127.7
Q ss_pred eEEeeCCcEEEEEcCCCChHHHHHHHHH----cCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCC-----cCc-ccc
Q 020527 102 CLTIEANEVVAIVGLSGSGKSTFVNLLL----RLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEP-----QLL-QMD 171 (325)
Q Consensus 102 sl~i~~Ge~~~iiG~nGsGKSTLl~~l~----gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~-----~l~-~~t 171 (325)
++++.+| +++|+||||||||||+++|. |..+|.+|.+..+...+.. ...+..|+++||++ .+. ..|
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~---~~~~~~v~~~f~~~~~~~~~v~r~~~ 92 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE---GEVRAQVKLAFENANGKKYTITRSLA 92 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhC---CCCcEEEEEEEEeCCCCEEEEEEEhh
Confidence 4566777 99999999999999999995 9989888877622222221 12356799999998 233 359
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH------HHHHHHHcCCCCEEEEeCCC
Q 020527 172 IKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR------IAIARAILRDPAILLLDEAT 245 (325)
Q Consensus 172 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR------v~iAral~~~p~llllDEPt 245 (325)
+++|+.+.. .+++. +.+++.+ ..||+||+|| ++||||++.+|+++|+||||
T Consensus 93 ~~~~~~~~~-----~~~~~---------~~~~~~~---------~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~ 149 (204)
T cd03240 93 ILENVIFCH-----QGESN---------WPLLDMR---------GRCSGGEKVLASLIIRLALAETFGSNCGILALDEPT 149 (204)
T ss_pred Hhhceeeec-----hHHHH---------HHHhcCc---------cccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCc
Confidence 999997741 12211 2223322 5699999996 78999999999999999999
Q ss_pred CCCCHHHHH-HHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCC
Q 020527 246 SALDSESEH-YVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDG 295 (325)
Q Consensus 246 s~LD~~~~~-~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G 295 (325)
++||+.... .+.+.+.+++++ .+.|+|++||+++.+..||+++.|++.
T Consensus 150 ~~LD~~~~~~~l~~~l~~~~~~--~~~~iiiitH~~~~~~~~d~i~~l~~~ 198 (204)
T cd03240 150 TNLDEENIEESLAEIIEERKSQ--KNFQLIVITHDEELVDAADHIYRVEKD 198 (204)
T ss_pred cccCHHHHHHHHHHHHHHHHhc--cCCEEEEEEecHHHHhhCCEEEEEeeC
Confidence 999999999 999999998642 267999999999988789999999653
No 380
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.97 E-value=1e-30 Score=250.77 Aligned_cols=199 Identities=26% Similarity=0.396 Sum_probs=158.4
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.+.++||+|.|.++. .++++++|-|..++.+++|||||||||||||++.|.+.|..|.|.-.-. .++
T Consensus 389 vi~~~nv~F~y~~~~--~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-----------~~~ 455 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDNP--MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-----------NKL 455 (614)
T ss_pred eEEEeccccCCCCcc--hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-----------ccc
Confidence 489999999998753 7999999999999999999999999999999999999999998864321 234
Q ss_pred EEEccCCc--C-ccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 020527 159 GFVGQEPQ--L-LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 235 (325)
Q Consensus 159 ~~v~Q~~~--l-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~ 235 (325)
++..|+.. + +..+..|+++-..+.....+.+...+.++++....+..| ..+||+|||.||++||.++.+
T Consensus 456 ~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p--------~~~LS~Gqr~rVlFa~l~~kq 527 (614)
T KOG0927|consen 456 PRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVP--------MSQLSDGQRRRVLFARLAVKQ 527 (614)
T ss_pred hhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccc--------hhhcccccchhHHHHHHHhcC
Confidence 45556542 2 467888887532222234555666666666654333333 267999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEE-EcChH
Q 020527 236 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIE-VGNHA 304 (325)
Q Consensus 236 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~-~g~~~ 304 (325)
|.+|||||||++||..+...+.+.|.++ .| +||+||||..++.. ++++++..+|.+.. .|+..
T Consensus 528 P~lLlLDEPtnhLDi~tid~laeaiNe~-----~G-gvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~ 592 (614)
T KOG0927|consen 528 PHLLLLDEPTNHLDIETIDALAEAINEF-----PG-GVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIE 592 (614)
T ss_pred CcEEEecCCCcCCCchhHHHHHHHHhcc-----CC-ceeeeechhhHHHHHHHHhHhhccCceeecCccHH
Confidence 9999999999999999999999999887 24 89999999999975 99999999988754 45443
No 381
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.96 E-value=4.9e-31 Score=234.44 Aligned_cols=179 Identities=22% Similarity=0.242 Sum_probs=127.2
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.|+++|.. +|++. .+++++++ ++++|+||||||||||+++|. +++|.+.. ...++++
T Consensus 5 ~l~l~nfk-~~~~~---~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~----~~~~~~i 61 (212)
T cd03274 5 KLVLENFK-SYAGE---QVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRAS----KMRQKKL 61 (212)
T ss_pred EEEEECcc-cCCCC---eeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHH----HhhhhhH
Confidence 47888885 78643 58999987 899999999999999999997 33454321 1113579
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCCCCCHHHH----------------HHHHHHcCHHHHHHhCCCCcccccCCCCCChH
Q 020527 159 GFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDI----------------EWAAKQAYVHEFILSLPCGYETLVDDDLLSGG 221 (325)
Q Consensus 159 ~~v~Q~~~l~-~~tv~enl~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgG 221 (325)
++++|+..++ ..|+.+++.+..... ..... .+..+..++ +...++ ....||+|
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L-------~~~~~~--~~~~lS~G 131 (212)
T cd03274 62 SDLIHNSAGHPNLDSCSVEVHFQEII-DKPLLKSKGIDLDHNRFLILQGEVEQIAQM-------PKKSWK--NISNLSGG 131 (212)
T ss_pred HHHhcCCCCCCCCceEEEEEEEEeCC-CHHHHHHCCcCCCCCceEEcCCcEEEeecc-------cccccc--chhhcCHH
Confidence 9999988766 457777664421100 00000 001111111 111111 12469999
Q ss_pred HHHHHHHHHHHcC----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeC
Q 020527 222 QKQRIAIARAILR----DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 294 (325)
Q Consensus 222 q~QRv~iAral~~----~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~ 294 (325)
||||++||||++. +|+++++||||++||+.++..+.+.++++++ +.|+|++||+.+....||++++|..
T Consensus 132 ~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~----~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 132 EKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTK----NAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC----CCEEEEEECcHHHHHhCCEEEEEEe
Confidence 9999999999963 5899999999999999999999999999853 5689999999766677999999964
No 382
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.96 E-value=1e-29 Score=218.94 Aligned_cols=228 Identities=23% Similarity=0.355 Sum_probs=176.3
Q ss_pred cEEEEEEEEECCCC-CCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC----CCCeEEECCEeCCCCCHHH
Q 020527 79 HVQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP----SDGQIYIDGFPLTDLDIRW 153 (325)
Q Consensus 79 ~i~~~~v~~~y~~~-~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~----~~G~I~i~g~~i~~~~~~~ 153 (325)
-+.++|++..+... +..++++++|+++.+||+-++||+||||||-..|.|+|..+- +.-+..+++.++-.+++++
T Consensus 3 LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~ 82 (330)
T COG4170 3 LLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred cccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHH
Confidence 46778888777432 235799999999999999999999999999999999999763 4567788888887787776
Q ss_pred Hhc----ceEEEccCCcC-c--cccH----HHHHhcCCC-------CCCCHHHHHHHHHHcCHHH---HHHhCCCCcccc
Q 020527 154 LRE----KIGFVGQEPQL-L--QMDI----KSNIMYGCP-------KDVKNEDIEWAAKQAYVHE---FILSLPCGYETL 212 (325)
Q Consensus 154 ~r~----~i~~v~Q~~~l-~--~~tv----~enl~~~~~-------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 212 (325)
.|+ .|+++||+|.- + +.+| .+||-+... ....+.+..+.+.++++.+ .+...|
T Consensus 83 RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP------ 156 (330)
T COG4170 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYP------ 156 (330)
T ss_pred hhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCc------
Confidence 554 58899999953 2 3344 344422110 0111223334455555533 233333
Q ss_pred cCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEE
Q 020527 213 VDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVV 291 (325)
Q Consensus 213 ~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~ 291 (325)
.+|-.||-|+|+||.|++.+|++||.||||+++|+.++.+++++|.++.+. +|.||++++||+..+.. ||++-|
T Consensus 157 ---~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn--~~TtILL~s~Dl~~is~W~d~i~V 231 (330)
T COG4170 157 ---YELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQN--SNTTILLISHDLQMISQWADKINV 231 (330)
T ss_pred ---chhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhcc--CCceEEEEcccHHHHHHHhhheEE
Confidence 579999999999999999999999999999999999999999999999764 68999999999999865 999999
Q ss_pred EeCCEEEEEcChHHHhhc-CHHHHHHH
Q 020527 292 IDDGRIIEVGNHAELLHK-GRLYAKLV 317 (325)
Q Consensus 292 l~~G~i~~~g~~~~l~~~-~~~~~~~~ 317 (325)
|..|+-++++..+++++. ..-|.+.+
T Consensus 232 lYCGQ~~ESa~~e~l~~~PhHPYTqAL 258 (330)
T COG4170 232 LYCGQTVESAPSEELVTMPHHPYTQAL 258 (330)
T ss_pred EEecccccccchhHHhcCCCCchHHHH
Confidence 999999999999999875 34465543
No 383
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.96 E-value=1.1e-28 Score=267.92 Aligned_cols=213 Identities=21% Similarity=0.314 Sum_probs=147.0
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHH---------HHHcCCCCCCC----e----EEE
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVN---------LLLRLYEPSDG----Q----IYI 141 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~---------~l~gl~~~~~G----~----I~i 141 (325)
.++++|++. ..|+++||+|++||+++|+|+||||||||++ .+.|..++..+ . |.+
T Consensus 600 ~L~l~~~~~--------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~i 671 (1809)
T PRK00635 600 TLTLSKATK--------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHI 671 (1809)
T ss_pred eEEEecccc--------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEe
Confidence 377777751 2799999999999999999999999999999 55564332111 1 234
Q ss_pred CCEeCCCCC----H------HHHh---------c-----ceEEEccC------------------C--------------
Q 020527 142 DGFPLTDLD----I------RWLR---------E-----KIGFVGQE------------------P-------------- 165 (325)
Q Consensus 142 ~g~~i~~~~----~------~~~r---------~-----~i~~v~Q~------------------~-------------- 165 (325)
|-.++...+ . ..+| + ...|.|+. +
T Consensus 672 dQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy 751 (1809)
T PRK00635 672 TRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRF 751 (1809)
T ss_pred cCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCccc
Confidence 433332110 0 0122 1 12233432 0
Q ss_pred ------cCc-cccHHHHHhcCCCCC----CCHHHHHHHHHHcCHHHHHHhCCCCcc-cccCCCCCChHHHHHHHHHHHHc
Q 020527 166 ------QLL-QMDIKSNIMYGCPKD----VKNEDIEWAAKQAYVHEFILSLPCGYE-TLVDDDLLSGGQKQRIAIARAIL 233 (325)
Q Consensus 166 ------~l~-~~tv~enl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~LSgGq~QRv~iAral~ 233 (325)
..+ ..||.|++.++.... ..... ..+. + +.++.+..++. ......+|||||+||++|||||+
T Consensus 752 ~~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~---i~~~--l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~ 825 (1809)
T PRK00635 752 LPQVLEVRYKGKNIADILEMTAYEAEKFFLDEPS---IHEK--I-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELL 825 (1809)
T ss_pred CHHHHhhccCCCCHHHHHHcCHHHHHHcccChHH---HHHH--H-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHh
Confidence 023 357888887752100 00111 1111 1 23444443322 22234679999999999999997
Q ss_pred ---CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEe------CCEEEEEcChH
Q 020527 234 ---RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVID------DGRIIEVGNHA 304 (325)
Q Consensus 234 ---~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~------~G~i~~~g~~~ 304 (325)
.+|+++||||||++||+.+.+.+++.|+++++ .|.|||+|||+++.+..||++++|. +|++++.|+++
T Consensus 826 ~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~---~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpe 902 (1809)
T PRK00635 826 APSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTH---QGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPE 902 (1809)
T ss_pred hcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHH
Confidence 69999999999999999999999999999974 4889999999999997799999996 79999999999
Q ss_pred HHhh
Q 020527 305 ELLH 308 (325)
Q Consensus 305 ~l~~ 308 (325)
++..
T Consensus 903 el~~ 906 (1809)
T PRK00635 903 ELIH 906 (1809)
T ss_pred HHHh
Confidence 9875
No 384
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.96 E-value=2.4e-28 Score=233.27 Aligned_cols=222 Identities=26% Similarity=0.448 Sum_probs=175.2
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeC-CCCCHHHHh-c
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL-TDLDIRWLR-E 156 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i-~~~~~~~~r-~ 156 (325)
.++++|++..-... ...+++|||+|++||++||.|-.|-|-+-|+.+|+|+.+|.+|+|.++|+++ ...++.++| .
T Consensus 257 vL~V~~L~v~~~~~--~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~ 334 (501)
T COG3845 257 VLEVEDLSVKDRRG--VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRL 334 (501)
T ss_pred EEEEeeeEeecCCC--CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhc
Confidence 59999999875432 4689999999999999999999999999999999999999999999999997 566666554 5
Q ss_pred ceEEEccCCc---C-ccccHHHHHhcCCCCC---CCHHHHHHHHHHcCHHHHHHhCCCCc-ccccCCCCCChHHHHHHHH
Q 020527 157 KIGFVGQEPQ---L-LQMDIKSNIMYGCPKD---VKNEDIEWAAKQAYVHEFILSLPCGY-ETLVDDDLLSGGQKQRIAI 228 (325)
Q Consensus 157 ~i~~v~Q~~~---l-~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~LSgGq~QRv~i 228 (325)
.++|||.|.+ + ..+|+.||+.++.... .....+..-.-.....+.++++...- ........||||.+||+-+
T Consensus 335 G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~Il 414 (501)
T COG3845 335 GLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLIL 414 (501)
T ss_pred CCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhh
Confidence 7999999873 3 4789999997753221 01100111111111233444443221 1112235799999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHH
Q 020527 229 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAE 305 (325)
Q Consensus 229 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~ 305 (325)
||-|.++|++||+.+||-|||..+.+.+.+.|.+.++ .|++|+++|-|++++. .||||.||.+|+++...++++
T Consensus 415 aREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~---~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~~ 489 (501)
T COG3845 415 ARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRD---AGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEE 489 (501)
T ss_pred hhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHh---cCCEEEEEehhHHHHHHhhheeeeeeCCceeccccccc
Confidence 9999999999999999999999999999999999875 5999999999999985 599999999999998877765
No 385
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.96 E-value=1.1e-28 Score=257.78 Aligned_cols=111 Identities=31% Similarity=0.483 Sum_probs=94.6
Q ss_pred HHHHhCCCCcc-cccCCCCCChHHHHHHHHHHHHcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEE
Q 020527 200 EFILSLPCGYE-TLVDDDLLSGGQKQRIAIARAILRDP---AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIV 275 (325)
Q Consensus 200 ~~~~~~~~~~~-~~~~~~~LSgGq~QRv~iAral~~~p---~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~ 275 (325)
+.++.+..++. .......|||||+||+.|||+|+.+| +++||||||+|||+.....+.+.|+++.+ .|.|||+
T Consensus 812 ~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~---~G~TVIi 888 (943)
T PRK00349 812 QTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVD---KGNTVVV 888 (943)
T ss_pred HHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEE
Confidence 34555555442 22234679999999999999999999 99999999999999999999999999864 4789999
Q ss_pred EecCchHHHhcCEEEEE------eCCEEEEEcChHHHhhcCHHH
Q 020527 276 IAHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLHKGRLY 313 (325)
Q Consensus 276 vtH~~~~~~~~d~v~~l------~~G~i~~~g~~~~l~~~~~~~ 313 (325)
|||+++.+..||+|+.| ++|++++.|+++++......+
T Consensus 889 itH~~~~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~s~ 932 (943)
T PRK00349 889 IEHNLDVIKTADWIIDLGPEGGDGGGEIVATGTPEEVAKVEASY 932 (943)
T ss_pred EecCHHHHHhCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcccH
Confidence 99999999889999999 799999999999998765433
No 386
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=4.2e-29 Score=260.16 Aligned_cols=215 Identities=27% Similarity=0.477 Sum_probs=169.3
Q ss_pred EEEEEEEEECCCC-CCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC--CCCCeEEECCEeCCCCCHHHHhc
Q 020527 80 VQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--PSDGQIYIDGFPLTDLDIRWLRE 156 (325)
Q Consensus 80 i~~~~v~~~y~~~-~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~--~~~G~I~i~g~~i~~~~~~~~r~ 156 (325)
...+|+.+.-+.+ ..+++|+|||=-++||-.+||+|+|||||||||++|+|=.. ..+|+|+++|.+..+ ...+|
T Consensus 788 ~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R 864 (1391)
T KOG0065|consen 788 FYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFAR 864 (1391)
T ss_pred EEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhcc
Confidence 4455555544222 23679999999999999999999999999999999998542 347999999998653 45678
Q ss_pred ceEEEccCC-cCccccHHHHHhcCC----CCCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 020527 157 KIGFVGQEP-QLLQMDIKSNIMYGC----PKDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 227 (325)
Q Consensus 157 ~i~~v~Q~~-~l~~~tv~enl~~~~----~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~ 227 (325)
.+|||-|+. ++...||+|-|.|.. +...+. +.++++.+..+++++.+.+. |. .+..||..||+|+.
T Consensus 865 ~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiV-G~----~G~GLs~eQRKrLT 939 (1391)
T KOG0065|consen 865 VSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALV-GL----PGSGLSTEQRKRLT 939 (1391)
T ss_pred ccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhc-cC----CCCCCCHHHhceee
Confidence 899999987 455789999997642 222222 33556666666665544432 11 12569999999999
Q ss_pred HHHHHcCCC-CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchH--HHhcCEEEEEe-CCEEEEEcCh
Q 020527 228 IARAILRDP-AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST--IKAVDRIVVID-DGRIIEVGNH 303 (325)
Q Consensus 228 iAral~~~p-~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~--~~~~d~v~~l~-~G~i~~~g~~ 303 (325)
||--|+.+| .||+|||||||||..++..+++.++++++ .|.||+++-|.++. .+..|+++.|+ +|+.|..|+.
T Consensus 940 IgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~---tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~l 1016 (1391)
T KOG0065|consen 940 IGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLAD---TGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPL 1016 (1391)
T ss_pred EEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHh---cCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCc
Confidence 999999999 89999999999999999999999999985 59999999999984 36799999997 5788999886
Q ss_pred HH
Q 020527 304 AE 305 (325)
Q Consensus 304 ~~ 305 (325)
.+
T Consensus 1017 G~ 1018 (1391)
T KOG0065|consen 1017 GE 1018 (1391)
T ss_pred cc
Confidence 53
No 387
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.95 E-value=1.2e-27 Score=225.76 Aligned_cols=165 Identities=28% Similarity=0.381 Sum_probs=133.7
Q ss_pred EeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcC-ccccHHHHHhcCCCC
Q 020527 104 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQL-LQMDIKSNIMYGCPK 182 (325)
Q Consensus 104 ~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l-~~~tv~enl~~~~~~ 182 (325)
+|..||+++++||||-||||++++|+|.++|++|. ..+ -+|+|=||--.- |.+||.+.+.-..+.
T Consensus 363 ~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~----------~~vSyKPQyI~~~~~gtV~~~l~~~~~~ 428 (591)
T COG1245 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED----------LKVSYKPQYISPDYDGTVEDLLRSAIRS 428 (591)
T ss_pred eeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc----------ceEeecceeecCCCCCcHHHHHHHhhhh
Confidence 45667889999999999999999999999999997 111 258888886433 689999988643221
Q ss_pred -CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 020527 183 -DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLH 261 (325)
Q Consensus 183 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~ 261 (325)
..+.....+..+-..++.++++.- .+|||||.|||+||.||.++++++|||||+|.||.+.+-.+-+.++
T Consensus 429 ~~~~s~~~~ei~~pl~l~~i~e~~v---------~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIR 499 (591)
T COG1245 429 AFGSSYFKTEIVKPLNLEDLLERPV---------DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIR 499 (591)
T ss_pred hcccchhHHhhcCccchHHHHhccc---------ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHH
Confidence 111222334555667777776644 4699999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCeEEEEEecCchHHHh-cCEEEEEe
Q 020527 262 ALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID 293 (325)
Q Consensus 262 ~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~ 293 (325)
++... .++|.++|-||+-.+.. +||+++++
T Consensus 500 R~~e~--~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 500 RFIEN--NEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred HHHhh--cCceEEEEecceehhhhhhceEEEEe
Confidence 99764 57899999999999986 99999996
No 388
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.95 E-value=6e-28 Score=219.53 Aligned_cols=202 Identities=19% Similarity=0.215 Sum_probs=130.9
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEe-C-CC-----CCH
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP-L-TD-----LDI 151 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~-i-~~-----~~~ 151 (325)
.|+++|. ++|.+. . ++...++ +++|+||||||||||+.+|++++.+..|++...+.+ + .. .+.
T Consensus 3 ~i~l~nf-~~~~~~---~-----~~~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~ 72 (247)
T cd03275 3 RLELENF-KSYKGR---H-----VIGPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDS 72 (247)
T ss_pred EEEEECc-cccCCC---e-----eecCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCC
Confidence 3778886 566421 1 2223344 999999999999999999999998888887654421 1 10 011
Q ss_pred HHHhcceEEEccCCc--CccccHHHHH-hcCC-CCCCCHHHHHHHHHHcCHH--------------HHHHhCCCCccccc
Q 020527 152 RWLREKIGFVGQEPQ--LLQMDIKSNI-MYGC-PKDVKNEDIEWAAKQAYVH--------------EFILSLPCGYETLV 213 (325)
Q Consensus 152 ~~~r~~i~~v~Q~~~--l~~~tv~enl-~~~~-~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~ 213 (325)
....-.+.|..|++. .+..++.+.. .+.. ........+.+.++..++. ++.+..|.+. ...
T Consensus 73 ~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~-~~~ 151 (247)
T cd03275 73 NSAYVTAVYEDDDGEEKTFRRIITGGSSSYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGK-RFR 151 (247)
T ss_pred ceEEEEEEEEcCCCcEEEEEEEEECCceEEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcch-hhh
Confidence 122223445445432 2333333321 1111 1122344445555555542 2222222110 011
Q ss_pred CCCCCChHHHHHHHHHHHHcCC----CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEE
Q 020527 214 DDDLLSGGQKQRIAIARAILRD----PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI 289 (325)
Q Consensus 214 ~~~~LSgGq~QRv~iAral~~~----p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v 289 (325)
...+||+|||||++||||++.+ |+++|+||||++||+..+..+.+.+.++++ .|.++|+|||+.+.+..||++
T Consensus 152 ~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~---~g~~vi~isH~~~~~~~~d~i 228 (247)
T cd03275 152 DMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAG---PNFQFIVISLKEEFFSKADAL 228 (247)
T ss_pred hHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhcc---CCcEEEEEECCHHHHhhCCeE
Confidence 1256999999999999999864 899999999999999999999999999864 378999999998888789999
Q ss_pred EEEeC
Q 020527 290 VVIDD 294 (325)
Q Consensus 290 ~~l~~ 294 (325)
++|..
T Consensus 229 ~~~~~ 233 (247)
T cd03275 229 VGVYR 233 (247)
T ss_pred EEEEe
Confidence 88864
No 389
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.95 E-value=2.8e-27 Score=227.31 Aligned_cols=219 Identities=20% Similarity=0.314 Sum_probs=138.0
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEEC--CEeCCCCCHHHHhc
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID--GFPLTDLDIRWLRE 156 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~--g~~i~~~~~~~~r~ 156 (325)
.+.++|++++|.+. .+++|+.|++.+|+.+||+|+|||||||+|++|.|-..|..-++-+. .+++..-....+..
T Consensus 75 dvk~~sls~s~~g~---~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~ 151 (614)
T KOG0927|consen 75 DVKIESLSLSFHGV---ELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQA 151 (614)
T ss_pred cceeeeeeeccCCc---eeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHH
Confidence 59999999999764 69999999999999999999999999999999999988865544332 11111100000100
Q ss_pred ceEEEccCCcCccccHHHHHhcCCCCCCCHH---HHHHHHHHcC-------HHHHHHhCCCCc-ccccCCCCCChHHHHH
Q 020527 157 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNE---DIEWAAKQAY-------VHEFILSLPCGY-ETLVDDDLLSGGQKQR 225 (325)
Q Consensus 157 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~---~~~~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~LSgGq~QR 225 (325)
-+-..++...-+. --.|.+.-... ....+ .+...+...+ +...+..+...- ........||||+|.|
T Consensus 152 v~~~~~~e~~rle-~~~E~l~~~~d-~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR 229 (614)
T KOG0927|consen 152 VVMETDHERKRLE-YLAEDLAQACD-DKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMR 229 (614)
T ss_pred HhhhhHHHHHHHH-HHHHHHHhhcc-chhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHH
Confidence 0000000000000 00111111000 00000 0111111111 111111111100 0011125799999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEE-EEEcCh
Q 020527 226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI-IEVGNH 303 (325)
Q Consensus 226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i-~~~g~~ 303 (325)
++|||||..+|++|||||||++||+++...+.+.|.++. .+ ++|+++|+-+++.. |.+|+.|++++. .+.|+.
T Consensus 230 ~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d----~~-~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gny 304 (614)
T KOG0927|consen 230 AALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYD----RI-ILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNY 304 (614)
T ss_pred HHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhcc----Cc-eEEEEecchhhhhhHhhhhheecccceeeecCCH
Confidence 999999999999999999999999999999998888773 12 89999999999965 999999999995 556676
Q ss_pred HHHh
Q 020527 304 AELL 307 (325)
Q Consensus 304 ~~l~ 307 (325)
+...
T Consensus 305 dqy~ 308 (614)
T KOG0927|consen 305 DQYV 308 (614)
T ss_pred HHHh
Confidence 6654
No 390
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=4.2e-27 Score=245.51 Aligned_cols=104 Identities=31% Similarity=0.474 Sum_probs=88.6
Q ss_pred HHHHhCCCCcc-cccCCCCCChHHHHHHHHHHHHcC---CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEE
Q 020527 200 EFILSLPCGYE-TLVDDDLLSGGQKQRIAIARAILR---DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIV 275 (325)
Q Consensus 200 ~~~~~~~~~~~-~~~~~~~LSgGq~QRv~iAral~~---~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~ 275 (325)
+.++.+..++. ......+|||||+||+.|||+|+. +|+++||||||++||+.....+.+.|+++.+ .|.|||+
T Consensus 810 ~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~---~G~TVIv 886 (924)
T TIGR00630 810 QTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVD---QGNTVVV 886 (924)
T ss_pred HHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEE
Confidence 34445444432 222346799999999999999997 5999999999999999999999999999964 4889999
Q ss_pred EecCchHHHhcCEEEEE------eCCEEEEEcChHHH
Q 020527 276 IAHRLSTIKAVDRIVVI------DDGRIIEVGNHAEL 306 (325)
Q Consensus 276 vtH~~~~~~~~d~v~~l------~~G~i~~~g~~~~l 306 (325)
+||+++.+..||++++| ++|++++.|+++++
T Consensus 887 i~H~~~~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 887 IEHNLDVIKTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EeCCHHHHHhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999998889999999 79999999998875
No 391
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.95 E-value=2.1e-27 Score=209.02 Aligned_cols=177 Identities=20% Similarity=0.204 Sum_probs=118.8
Q ss_pred ceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCC-CHHHHhcceEEEccCCcCccccHHHH
Q 020527 97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL-DIRWLREKIGFVGQEPQLLQMDIKSN 175 (325)
Q Consensus 97 iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~-~~~~~r~~i~~v~Q~~~l~~~tv~en 175 (325)
.++++++++.+| +.+|+||||||||||+.+|...+..... ....|..+..+ ....-...|.+.+|+..++. |
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~ 83 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----N 83 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccC-----C
Confidence 357788888887 8899999999999999999754332211 11112211110 00011345788888765544 1
Q ss_pred HhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH----cCCCCEEEEeCCCCCCCHH
Q 020527 176 IMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI----LRDPAILLLDEATSALDSE 251 (325)
Q Consensus 176 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral----~~~p~llllDEPts~LD~~ 251 (325)
+ ..... ...+.++++. .........+||+|||||++||+|+ +.+|+++||||||++||+.
T Consensus 84 -----~--~~~~~------~~~~~~~l~~---~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~ 147 (198)
T cd03276 84 -----P--LCVLS------QDMARSFLTS---NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMV 147 (198)
T ss_pred -----c--CCHHH------HHHHHHHhcc---ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHH
Confidence 1 10110 1112233332 1111222367999999999999999 6999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCE
Q 020527 252 SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR 296 (325)
Q Consensus 252 ~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~ 296 (325)
+...+.+.|.++.++...+.||+++||+++.+..+|+|.+|+.++
T Consensus 148 ~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 148 NRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 999999999887542112468999999999998889999998753
No 392
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1.8e-27 Score=227.49 Aligned_cols=199 Identities=23% Similarity=0.300 Sum_probs=139.7
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.|...+++..|+++ .+|++-++++..|..+||+|+||+|||||||+|+. |.|.....+ .+.|-
T Consensus 80 Di~~~~fdLa~G~k---~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~ve------qE~~g-- 142 (582)
T KOG0062|consen 80 DIHIDNFDLAYGGK---ILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVE------QEVRG-- 142 (582)
T ss_pred ceeeeeeeeeecch---hhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCch------hheec--
Confidence 58999999999865 69999999999999999999999999999999998 555433321 00110
Q ss_pred EEEccCC-cCcc-ccHHHHHhcCC--CCCCCHHHHHH-HHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 020527 159 GFVGQEP-QLLQ-MDIKSNIMYGC--PKDVKNEDIEW-AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 233 (325)
Q Consensus 159 ~~v~Q~~-~l~~-~tv~enl~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 233 (325)
-+++-.- .+-. .++.+-+.-.. ......+++.. ++.-.+..+-+...|. ..||||-|-|++|||||.
T Consensus 143 ~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt--------~slSGGWrMrlaLARAlf 214 (582)
T KOG0062|consen 143 DDTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPT--------KSLSGGWRMRLALARALF 214 (582)
T ss_pred cchHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccc--------cccCcchhhHHHHHHHHh
Confidence 0111111 1112 23333332110 00001122222 3334444443433332 579999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEE-EEEcChHHHhh
Q 020527 234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI-IEVGNHAELLH 308 (325)
Q Consensus 234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i-~~~g~~~~l~~ 308 (325)
.+|+||||||||+.||..+...+.+.|..+ +.|+|+||||-+++.. |..|+.+++-++ .+.|+.+++..
T Consensus 215 ~~pDlLLLDEPTNhLDv~av~WLe~yL~t~------~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk 285 (582)
T KOG0062|consen 215 AKPDLLLLDEPTNHLDVVAVAWLENYLQTW------KITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVK 285 (582)
T ss_pred cCCCEEeecCCcccchhHHHHHHHHHHhhC------CceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHH
Confidence 999999999999999999999888888776 4699999999999976 999999988777 34577776654
No 393
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.94 E-value=1e-25 Score=215.71 Aligned_cols=194 Identities=25% Similarity=0.363 Sum_probs=159.0
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.|.++||-.--|.. ..++..++|+|++|-.+.|+||||||||+|+|+|.|+.|...|...+ ++ +.++
T Consensus 481 gI~lenIpvItP~~--~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~--------P~---~~~m 547 (728)
T KOG0064|consen 481 GIILENIPVITPAG--DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSI--------PR---PNNI 547 (728)
T ss_pred ceEEecCceeccCc--ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeec--------CC---Ccce
Confidence 38899998877653 35889999999999999999999999999999999999987776543 11 2459
Q ss_pred EEEccCCcCccccHHHHHhcCC------CCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC-CCCChHHHHHHHHHHH
Q 020527 159 GFVGQEPQLLQMDIKSNIMYGC------PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSGGQKQRIAIARA 231 (325)
Q Consensus 159 ~~v~Q~~~l~~~tv~enl~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~LSgGq~QRv~iAra 231 (325)
-|+||.|+.--+|.+|.|.++. .+...+.++...++.+.++..+++-. |.+....- ..||||||||+++||.
T Consensus 548 FYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~-g~da~~dWkd~LsgGekQR~~mARm 626 (728)
T KOG0064|consen 548 FYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREG-GWDAVRDWKDVLSGGEKQRMGMARM 626 (728)
T ss_pred EeccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhcc-ChhhhccHHhhccchHHHHHHHHHH
Confidence 9999999876789999988753 12345667778888888887776643 55555442 4699999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEE
Q 020527 232 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 292 (325)
Q Consensus 232 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l 292 (325)
+.++|+.-+|||.||+..++.+..+.+..+.. |.+.+-|||+++....-.+++-+
T Consensus 627 ~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~------gi~llsithrpslwk~h~~ll~~ 681 (728)
T KOG0064|consen 627 FYHRPKYALLDECTSAVSIDVEGKIFQAAKDA------GISLLSITHRPSLWKYHTHLLEF 681 (728)
T ss_pred HhcCcchhhhhhhhcccccchHHHHHHHHHhc------CceEEEeecCccHHHHHHHHHhc
Confidence 99999999999999999999999898888765 89999999999998765555544
No 394
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=2.4e-26 Score=219.71 Aligned_cols=195 Identities=23% Similarity=0.330 Sum_probs=161.2
Q ss_pred ccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 020527 78 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 157 (325)
Q Consensus 78 ~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~ 157 (325)
+.+++.+|+|.|.... -+.+.++++.++.-+.++++|+||+||||++|++.+-..|..|.+.+.+ |.+
T Consensus 361 p~l~i~~V~f~y~p~~-y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSE-YQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CeeEEEeeeccCCCcc-hhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 3699999999997542 2699999999999999999999999999999999999999999887654 567
Q ss_pred eEEEccCCcC-ccc--cHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 020527 158 IGFVGQEPQL-LQM--DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 234 (325)
Q Consensus 158 i~~v~Q~~~l-~~~--tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~ 234 (325)
|+|.+|...= +.. +..|.++-. .+...++++...+..+|+..-+...+. ..||||||=||++|.....
T Consensus 429 i~~f~Qhhvd~l~~~v~~vd~~~~~-~pG~~~ee~r~hl~~~Gl~g~la~~si--------~~LSGGQKsrvafA~~~~~ 499 (582)
T KOG0062|consen 429 IKYFAQHHVDFLDKNVNAVDFMEKS-FPGKTEEEIRRHLGSFGLSGELALQSI--------ASLSGGQKSRVAFAACTWN 499 (582)
T ss_pred ecchhHhhhhHHHHHhHHHHHHHHh-CCCCCHHHHHHHHHhcCCCchhhhccc--------cccCCcchhHHHHHHHhcC
Confidence 9999998643 343 344444322 223467788888888887655443332 4699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEE
Q 020527 235 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIE 299 (325)
Q Consensus 235 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~ 299 (325)
+|.+|+|||||+.||.++-..+-+.|+.+ +| .||+||||.+++.. |+.+++.++|++..
T Consensus 500 ~PhlLVLDEPTNhLD~dsl~AL~~Al~~F-----~G-GVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 500 NPHLLVLDEPTNHLDRDSLGALAKALKNF-----NG-GVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred CCcEEEecCCCccccHHHHHHHHHHHHhc-----CC-cEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 99999999999999999998888888877 23 79999999999976 99999999999965
No 395
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=2e-26 Score=216.45 Aligned_cols=198 Identities=26% Similarity=0.414 Sum_probs=152.6
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.+-+.||+|.|++. .+.+.+++|-|.-...+|||||||.||||||++|.|-+.|+.|+.+=+ .|-+|
T Consensus 586 vLGlH~VtFgy~gq--kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn-----------hrL~i 652 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQ--KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN-----------HRLRI 652 (807)
T ss_pred eeecccccccCCCC--CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc-----------ceeee
Confidence 48899999999875 579999999999999999999999999999999999999999976532 24579
Q ss_pred EEEccCCc--Cc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 020527 159 GFVGQEPQ--LL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 235 (325)
Q Consensus 159 ~~v~Q~~~--l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~ 235 (325)
||..|+.. |- ..|..|.+.-.. ....+.....+-.+++....... ....|||||+-||++|-.-+..
T Consensus 653 G~FdQh~~E~L~~Eetp~EyLqr~F--Nlpyq~ARK~LG~fGL~sHAHTi--------kikdLSGGQKaRValaeLal~~ 722 (807)
T KOG0066|consen 653 GWFDQHANEALNGEETPVEYLQRKF--NLPYQEARKQLGTFGLASHAHTI--------KIKDLSGGQKARVALAELALGG 722 (807)
T ss_pred echhhhhHHhhccccCHHHHHHHhc--CCChHHHHHHhhhhhhhhccceE--------eeeecCCcchHHHHHHHHhcCC
Confidence 99999863 32 458888875332 23344445555555554322111 1246999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEE-EcChHH
Q 020527 236 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIE-VGNHAE 305 (325)
Q Consensus 236 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~-~g~~~~ 305 (325)
|+||||||||++||.++...+-+.|.++. | .|||||||-.++.. --..+|+++..|-+ .|+.++
T Consensus 723 PDvlILDEPTNNLDIESIDALaEAIney~-----G-gVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeD 788 (807)
T KOG0066|consen 723 PDVLILDEPTNNLDIESIDALAEAINEYN-----G-GVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFED 788 (807)
T ss_pred CCEEEecCCCCCcchhhHHHHHHHHHhcc-----C-cEEEEecccceeeecCceEEEEccCChhhccccHHH
Confidence 99999999999999999999999998872 3 79999999998865 33566776655533 344443
No 396
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.92 E-value=1.9e-24 Score=185.76 Aligned_cols=205 Identities=20% Similarity=0.295 Sum_probs=152.5
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCC-CC-------
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD-LD------- 150 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~-~~------- 150 (325)
.|++.++.|+|+.. -+++-|+|++++.|....++|.||||||||||+|+|-.-.-.|.|.++|.+.-. -+
T Consensus 13 aievsgl~f~y~~~--dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl 90 (291)
T KOG2355|consen 13 AIEVSGLQFKYKVS--DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDL 90 (291)
T ss_pred eEEEeccEEecccC--CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCce
Confidence 49999999999865 379999999999999999999999999999999999877777999999976422 00
Q ss_pred ---HHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 020527 151 ---IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 227 (325)
Q Consensus 151 ---~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~ 227 (325)
-.+|++.+++--.-|.--..++.+-| |+.. ....++-+...+.. . .+..-+.+.+|-|||+||.
T Consensus 91 ~YLGgeW~~~~~~agevplq~D~sae~mi-fgV~-g~dp~Rre~LI~iL---------D--Idl~WRmHkvSDGqrRRVQ 157 (291)
T KOG2355|consen 91 SYLGGEWSKTVGIAGEVPLQGDISAEHMI-FGVG-GDDPERREKLIDIL---------D--IDLRWRMHKVSDGQRRRVQ 157 (291)
T ss_pred eEecccccccccccccccccccccHHHHH-hhcc-CCChhHhhhhhhhe---------e--ccceEEEeeccccchhhhH
Confidence 11233433333322222234555443 3321 11122222222211 1 1111223569999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEE
Q 020527 228 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEV 300 (325)
Q Consensus 228 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~ 300 (325)
|+..|++.=++|||||-|--||..++..+++.+++-.++ +|.||++.||-.+=++. ..+++.|++|+++..
T Consensus 158 icMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~--RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~ 229 (291)
T KOG2355|consen 158 ICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQ--RGATIVYATHIFDGLETWPTHLVYIKSGKLVDN 229 (291)
T ss_pred HHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhh--cCcEEEEEeeeccchhhcchhEEEecCCeeeec
Confidence 999999999999999999999999999999999988765 58999999999987754 999999999999874
No 397
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.91 E-value=5e-24 Score=187.77 Aligned_cols=147 Identities=17% Similarity=0.120 Sum_probs=108.1
Q ss_pred ceeeeeEEeeCCc-EEEEEcCCCChHHHHHHHHH--------cCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcC
Q 020527 97 ILNHVCLTIEANE-VVAIVGLSGSGKSTFVNLLL--------RLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQL 167 (325)
Q Consensus 97 iL~~isl~i~~Ge-~~~iiG~nGsGKSTLl~~l~--------gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 167 (325)
.+.++||++.+|+ +++|+||||||||||+|+|+ |.+-|.... ..++|+.|....
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~-----------------~~~~~~~~~~~~ 78 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEG-----------------SSLPVFENIFAD 78 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcccccc-----------------ccCcCccEEEEe
Confidence 4568999999995 79999999999999999998 443332110 123444443211
Q ss_pred ccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCC
Q 020527 168 LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSA 247 (325)
Q Consensus 168 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~ 247 (325)
+ + . . +.+... ...+|+||||++.+++++ .+|+++++||||++
T Consensus 79 l----------g----~-~-------------~~l~~~---------~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~g 120 (200)
T cd03280 79 I----------G----D-E-------------QSIEQS---------LSTFSSHMKNIARILQHA-DPDSLVLLDELGSG 120 (200)
T ss_pred c----------C----c-h-------------hhhhcC---------cchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCC
Confidence 0 0 0 0 001100 035899999999999885 89999999999999
Q ss_pred CCHHHHHHHH-HHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEc
Q 020527 248 LDSESEHYVK-GVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 301 (325)
Q Consensus 248 LD~~~~~~i~-~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g 301 (325)
+|+.....+. ..++.+.+ .+.++|++||+.+....||+++.|++|++..++
T Consensus 121 lD~~~~~~i~~~~l~~l~~---~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 121 TDPVEGAALAIAILEELLE---RGALVIATTHYGELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CCHHHHHHHHHHHHHHHHh---cCCEEEEECCHHHHHHHHhcCCCeEEEEEEEec
Confidence 9999998886 46777754 378999999996666679999999999998763
No 398
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.91 E-value=1.3e-23 Score=181.85 Aligned_cols=74 Identities=24% Similarity=0.374 Sum_probs=68.2
Q ss_pred CChHHHHHHHHHHHHc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEe
Q 020527 218 LSGGQKQRIAIARAIL----RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVID 293 (325)
Q Consensus 218 LSgGq~QRv~iAral~----~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~ 293 (325)
||+||+||++|||+++ .+|+++|+|||+++||+.....+.+.+.++.+ .|.++|++||+++.+..+|+++.+.
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~---~g~tiIiiSH~~~~~~~adrvi~i~ 171 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAK---HTSQFIVITLKKEMFENADKLIGVL 171 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEECCHHHHhhCCeEEEEE
Confidence 8999999999999996 69999999999999999999999999998864 3689999999999888899999987
Q ss_pred C
Q 020527 294 D 294 (325)
Q Consensus 294 ~ 294 (325)
+
T Consensus 172 ~ 172 (178)
T cd03239 172 F 172 (178)
T ss_pred E
Confidence 5
No 399
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.90 E-value=6.8e-23 Score=182.26 Aligned_cols=183 Identities=15% Similarity=0.128 Sum_probs=110.3
Q ss_pred eeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHH-Hh-----cceEEEccCCcCcccc
Q 020527 98 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LR-----EKIGFVGQEPQLLQMD 171 (325)
Q Consensus 98 L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~-~r-----~~i~~v~Q~~~l~~~t 171 (325)
++++.+++.+| +.+|+||||||||||+.+|.-.+-...... .... ...+ ++ ..|-..++...- .=
T Consensus 14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~-~r~~-----~~~~~i~~g~~~~~v~~~~~~~~~--~~ 84 (213)
T cd03277 14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLL-GRAK-----KVGEFVKRGCDEGTIEIELYGNPG--NI 84 (213)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCcccc-cccc-----CHHHHhhCCCCcEEEEEEEEeCCC--cc
Confidence 45667777665 778999999999999999876553221100 0000 0011 11 112222211100 00
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcc-cccCCCCCChHHHHHHHHHHHH----cCCCCEEEEeCCCC
Q 020527 172 IKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYE-TLVDDDLLSGGQKQRIAIARAI----LRDPAILLLDEATS 246 (325)
Q Consensus 172 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~LSgGq~QRv~iAral----~~~p~llllDEPts 246 (325)
..+|+.+. .......+.... .-.+.+..++.+.. ......+||+|||||+.+|+++ +.+|+++|+||||+
T Consensus 85 ~~~n~~~~----~~q~~~~~~~~~-~~~e~l~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~ 159 (213)
T cd03277 85 QVDNLCQF----LPQDRVGEFAKL-SPIELLVKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQ 159 (213)
T ss_pred ccCCceEE----EchHHHHHHHhC-ChHhHheeeecCCCccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccc
Confidence 22333221 112222233222 22234444443322 1223468999999999877554 58999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhccCCCC-eEEEEEecCchHH-HhcC--EEEEEeCCE
Q 020527 247 ALDSESEHYVKGVLHALRNDCKTK-RTVIVIAHRLSTI-KAVD--RIVVIDDGR 296 (325)
Q Consensus 247 ~LD~~~~~~i~~~l~~l~~~~~~g-~tvi~vtH~~~~~-~~~d--~v~~l~~G~ 296 (325)
+||+.++..+.+.+.++.++ .| .|+|++||++... ..|| +|++|++|+
T Consensus 160 ~LD~~~~~~i~~~l~~~~~~--~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 160 GMDPTNERKVFDMLVETACK--EGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred cCCHHHHHHHHHHHHHHhhc--CCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 99999999999999998642 24 5899999998765 4455 889999886
No 400
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.90 E-value=8.2e-24 Score=199.95 Aligned_cols=187 Identities=25% Similarity=0.313 Sum_probs=134.6
Q ss_pred EEEEECCCCCCCCceeeeeE-EeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCC-------H----
Q 020527 84 NISFHYPSRPTVPILNHVCL-TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-------I---- 151 (325)
Q Consensus 84 ~v~~~y~~~~~~~iL~~isl-~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~-------~---- 151 (325)
++..+|+.+ -++=..+ ..++|+++||+||||-||||-+|+|+|.+.|.=|+- ++.+ +++ -
T Consensus 79 e~vHRYg~N----gFkL~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~--~~pp--~wdeVi~~FrGtELq 150 (591)
T COG1245 79 EVVHRYGVN----GFKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY--EDPP--SWDEVIKRFRGTELQ 150 (591)
T ss_pred cceeeccCC----ceEEecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC--CCCC--CHHHHHHHhhhhHHH
Confidence 366788754 2333333 357899999999999999999999999999987753 2211 111 0
Q ss_pred ---HHHh---cceEEEccC----CcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChH
Q 020527 152 ---RWLR---EKIGFVGQE----PQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGG 221 (325)
Q Consensus 152 ---~~~r---~~i~~v~Q~----~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgG 221 (325)
+.+. -++..=||- |..+.++|.|-+.-.. ......+..++.++.+.+++-. .+||||
T Consensus 151 ~YF~~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~d----e~g~~devve~l~L~nvl~r~v---------~~LSGG 217 (591)
T COG1245 151 NYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVD----ERGKFDEVVERLGLENVLDRDV---------SELSGG 217 (591)
T ss_pred HHHHHHHcCCcceecchHHHHHHHHHhcchHHHHHHhhh----hcCcHHHHHHHhcchhhhhhhh---------hhcCch
Confidence 1111 112333332 3334577777664310 0112345566666666665533 579999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeC
Q 020527 222 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD 294 (325)
Q Consensus 222 q~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~ 294 (325)
|.||++||.|++++++++++|||||-||...+-..-+.++++.+ .+++||+|.||+..+.. +|-|.++..
T Consensus 218 ELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~---~~k~ViVVEHDLavLD~lsD~vhI~YG 288 (591)
T COG1245 218 ELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAE---DGKYVIVVEHDLAVLDYLSDFVHILYG 288 (591)
T ss_pred HHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhc---cCCeEEEEechHHHHHHhhheeEEEec
Confidence 99999999999999999999999999999999999999999975 37899999999999976 899988863
No 401
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=5.1e-23 Score=190.12 Aligned_cols=76 Identities=21% Similarity=0.330 Sum_probs=68.5
Q ss_pred CCChHHHHHHHHHHHHcC----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEE
Q 020527 217 LLSGGQKQRIAIARAILR----DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 292 (325)
Q Consensus 217 ~LSgGq~QRv~iAral~~----~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l 292 (325)
.|||||+||+++|++++. +|+++|+||||++||+.....+.+.+.++.+ +.|+|++||+++....||++++|
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~----~~tii~isH~~~~~~~~d~~~~l 245 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR----SHQVLCITHLPQVAAMADNHFLV 245 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC----CCEEEEEechHHHHHhcCcEEEE
Confidence 499999999999997653 9999999999999999999999999998853 57999999999977779999999
Q ss_pred eCCE
Q 020527 293 DDGR 296 (325)
Q Consensus 293 ~~G~ 296 (325)
.+|.
T Consensus 246 ~~~~ 249 (276)
T cd03241 246 EKEV 249 (276)
T ss_pred EEec
Confidence 8874
No 402
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.88 E-value=1.1e-22 Score=212.55 Aligned_cols=201 Identities=23% Similarity=0.406 Sum_probs=161.0
Q ss_pred CCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC---CCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cc
Q 020527 95 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP---SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QM 170 (325)
Q Consensus 95 ~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~---~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~ 170 (325)
..+|+|+|.-+++|+.+.++||.|||||||+++++|-.+- ..|+|.+||.+.++... ++.++|++|+..-+ .+
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEecccccccccee
Confidence 4699999999999999999999999999999999998753 35799999999877644 67899999987666 69
Q ss_pred cHHHHHhcCCC--------CCCCHHH-----HHHHHHHcCHHHHHHhCCCCcccccCC---CCCChHHHHHHHHHHHHcC
Q 020527 171 DIKSNIMYGCP--------KDVKNED-----IEWAAKQAYVHEFILSLPCGYETLVDD---DLLSGGQKQRIAIARAILR 234 (325)
Q Consensus 171 tv~enl~~~~~--------~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~LSgGq~QRv~iAral~~ 234 (325)
||+|-+.|... ....+.+ .+..++..|++ +..++.++. ...|||||+||.+|-+++.
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~-------~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~ 277 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLD-------HCADTLVGNDMVRGVSGGERKRVSIGEMLVG 277 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCch-------hhccceecccccccccCcccceeeeeeeeec
Confidence 99999976421 0111111 11222333332 234455542 4589999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchH--HHhcCEEEEEeCCEEEEEcChHHHh
Q 020527 235 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST--IKAVDRIVVIDDGRIIEVGNHAELL 307 (325)
Q Consensus 235 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~--~~~~d~v~~l~~G~i~~~g~~~~l~ 307 (325)
+|+++++||+|.|||..+.-++.+.++++.+. .+.|.+++-|..+. ....|.|++|.+|+++..|+.++.+
T Consensus 278 ~~~~~~~De~t~GLDSsTal~iik~lr~~a~~--~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~ 350 (1391)
T KOG0065|consen 278 PASILFWDEITRGLDSSTAFQIIKALRQLAHI--TGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVL 350 (1391)
T ss_pred CcceeeeecccccccHHHHHHHHHHHHHHHhh--hcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHH
Confidence 99999999999999999999999999999764 47788888888764 3569999999999999999998875
No 403
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.87 E-value=4.3e-22 Score=169.79 Aligned_cols=138 Identities=23% Similarity=0.276 Sum_probs=101.9
Q ss_pred eeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEE-EccCCcCccccHHHHHhc
Q 020527 100 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF-VGQEPQLLQMDIKSNIMY 178 (325)
Q Consensus 100 ~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~-v~Q~~~l~~~tv~enl~~ 178 (325)
..++.+.++.++.|+|||||||||+++.+....-..+|.+.... +. +.++ +++...-| .+
T Consensus 13 ~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~----------~~g~~~~~~~~~~--------i~ 73 (162)
T cd03227 13 PNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV----------KAGCIVAAVSAEL--------IF 73 (162)
T ss_pred ccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc----------cCCCcceeeEEEE--------eh
Confidence 33445556679999999999999999998877655555443310 00 1111 11111000 00
Q ss_pred CCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC----CCCEEEEeCCCCCCCHHHHH
Q 020527 179 GCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR----DPAILLLDEATSALDSESEH 254 (325)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~----~p~llllDEPts~LD~~~~~ 254 (325)
. ..+||+||+||+++||+|.. +|+++|+|||++++|+....
T Consensus 74 ------------------------~-----------~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~ 118 (162)
T cd03227 74 ------------------------T-----------RLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQ 118 (162)
T ss_pred ------------------------h-----------eeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHH
Confidence 0 01389999999999999986 78999999999999999999
Q ss_pred HHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeC
Q 020527 255 YVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 294 (325)
Q Consensus 255 ~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~ 294 (325)
.+.+.+.++.++ +.++|++||+.+....+|+++.|+.
T Consensus 119 ~l~~~l~~~~~~---~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 119 ALAEAILEHLVK---GAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred HHHHHHHHHHhc---CCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 999999887642 6799999999999988999999964
No 404
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.86 E-value=2.5e-21 Score=181.36 Aligned_cols=180 Identities=26% Similarity=0.394 Sum_probs=137.4
Q ss_pred CCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcC--------CCCCCCeEEECCEeCCCCCHHHHhcceEEEccC--
Q 020527 95 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--------YEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQE-- 164 (325)
Q Consensus 95 ~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl--------~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~-- 164 (325)
..+|+|+||+|++|++++|+|+|||||||+|++|+|. |+|++|.|.+--..+ -+++|-.
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~-----------~a~iPge~E 464 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV-----------SALIPGEYE 464 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccch-----------hhccCcccc
Confidence 4689999999999999999999999999999999996 578999887643221 2344443
Q ss_pred CcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCC
Q 020527 165 PQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEA 244 (325)
Q Consensus 165 ~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEP 244 (325)
|.+-..|+.|.+.-- ..+-....+.+..+++.+..-. .....+||-|||.|.-||+++...|.+++.||-
T Consensus 465 p~f~~~tilehl~s~---tGD~~~AveILnraGlsDAvly-------Rr~f~ELStGQKeR~KLAkllaerpn~~~iDEF 534 (593)
T COG2401 465 PEFGEVTILEHLRSK---TGDLNAAVEILNRAGLSDAVLY-------RRKFSELSTGQKERAKLAKLLAERPNVLLIDEF 534 (593)
T ss_pred cccCchhHHHHHhhc---cCchhHHHHHHHhhccchhhhh-------hccHhhcCcchHHHHHHHHHHhcCCCcEEhhhh
Confidence 222245777776531 1111223345666666543211 111257999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh--cCEEEEEeCCEE
Q 020527 245 TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIVVIDDGRI 297 (325)
Q Consensus 245 ts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~--~d~v~~l~~G~i 297 (325)
-|.||+.+..++.+-+.+++++ .|.|++++||+.+.... -|.++.+.=|..
T Consensus 535 ~AhLD~~TA~rVArkiselaRe--~giTlivvThrpEv~~AL~PD~li~vgYg~v 587 (593)
T COG2401 535 AAHLDELTAVRVARKISELARE--AGITLIVVTHRPEVGNALRPDTLILVGYGKV 587 (593)
T ss_pred hhhcCHHHHHHHHHHHHHHHHH--hCCeEEEEecCHHHHhccCCceeEEeecccc
Confidence 9999999999999999999874 58999999999999864 599988876654
No 405
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.86 E-value=8.7e-22 Score=176.21 Aligned_cols=152 Identities=18% Similarity=0.199 Sum_probs=110.3
Q ss_pred CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE-EEccCCcCccccHHH
Q 020527 96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG-FVGQEPQLLQMDIKS 174 (325)
Q Consensus 96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~-~v~Q~~~l~~~tv~e 174 (325)
.+.+|++++++++++++|.||||+|||||+++++- ..+..++| |||.+...+ .+.+
T Consensus 18 ~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~---------------------~~~la~~g~~vpa~~~~~--~~~~ 74 (222)
T cd03285 18 FIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV---------------------IVLMAQIGCFVPCDSADI--PIVD 74 (222)
T ss_pred eEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH---------------------HHHHHHhCCCcCcccEEE--eccc
Confidence 58999999999999999999999999999999982 11233455 677664322 1222
Q ss_pred HHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH--cCCCCEEEEeCC---CCCCC
Q 020527 175 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI--LRDPAILLLDEA---TSALD 249 (325)
Q Consensus 175 nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral--~~~p~llllDEP---ts~LD 249 (325)
.+. ...++.+.+ ...+|.|++|+..+++++ +.+|+++||||| |+++|
T Consensus 75 ~il----------------~~~~l~d~~------------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD 126 (222)
T cd03285 75 CIL----------------ARVGASDSQ------------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYD 126 (222)
T ss_pred eeE----------------eeeccccch------------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHH
Confidence 211 111111111 135899999999999999 899999999999 99999
Q ss_pred HHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcC
Q 020527 250 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGN 302 (325)
Q Consensus 250 ~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~ 302 (325)
+..... ..++.+.++ .+.++|++||+.+....||++..+++|++...++
T Consensus 127 ~~~~~~--~il~~l~~~--~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 127 GFGLAW--AIAEYIATQ--IKCFCLFATHFHELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred HHHHHH--HHHHHHHhc--CCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEe
Confidence 987753 333444431 3789999999755556699999999999876653
No 406
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.86 E-value=3.7e-21 Score=209.61 Aligned_cols=111 Identities=24% Similarity=0.331 Sum_probs=95.7
Q ss_pred HHHHhCCCCcccccC-CCCCChHHHHHHHHHHHHcCC---CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEE
Q 020527 200 EFILSLPCGYETLVD-DDLLSGGQKQRIAIARAILRD---PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIV 275 (325)
Q Consensus 200 ~~~~~~~~~~~~~~~-~~~LSgGq~QRv~iAral~~~---p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~ 275 (325)
+.+...+.||.+.=. ...|||||.||+-||.-|..+ +.+++|||||.||++...+++++.|+++.. .|.|||+
T Consensus 1681 ~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~---~g~tviv 1757 (1809)
T PRK00635 1681 QALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVS---LGHSVIY 1757 (1809)
T ss_pred HHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHh---cCCeEEE
Confidence 456667777765433 357999999999999999875 789999999999999999999999999975 5889999
Q ss_pred EecCchHHHhcCEEEEE------eCCEEEEEcChHHHhhcCHHH
Q 020527 276 IAHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLHKGRLY 313 (325)
Q Consensus 276 vtH~~~~~~~~d~v~~l------~~G~i~~~g~~~~l~~~~~~~ 313 (325)
|.||++.++.||+|+-| +.|+|++.|+|+++...+..+
T Consensus 1758 ieH~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~~~~S~ 1801 (1809)
T PRK00635 1758 IDHDPALLKQADYLIEMGPGSGKTGGKILFSGPPKDISASKDSL 1801 (1809)
T ss_pred EeCCHHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhhCCCCc
Confidence 99999999999999999 458999999999998765433
No 407
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.85 E-value=1.4e-20 Score=188.45 Aligned_cols=111 Identities=32% Similarity=0.508 Sum_probs=94.0
Q ss_pred HHhCCCCcccccC-CCCCChHHHHHHHHHHHHcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEe
Q 020527 202 ILSLPCGYETLVD-DDLLSGGQKQRIAIARAILRDP---AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIA 277 (325)
Q Consensus 202 ~~~~~~~~~~~~~-~~~LSgGq~QRv~iAral~~~p---~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vt 277 (325)
+.....+|-+.=. ...|||||.|||=||.-|.+.. -++||||||.||-....+++++.|.++.. .|.|||+|-
T Consensus 806 L~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd---~GnTViVIE 882 (935)
T COG0178 806 LVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVD---KGNTVIVIE 882 (935)
T ss_pred HHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEe
Confidence 3344455443222 2579999999999999999877 89999999999999999999999999975 588999999
Q ss_pred cCchHHHhcCEEEEE------eCCEEEEEcChHHHhhcCHHHHH
Q 020527 278 HRLSTIKAVDRIVVI------DDGRIIEVGNHAELLHKGRLYAK 315 (325)
Q Consensus 278 H~~~~~~~~d~v~~l------~~G~i~~~g~~~~l~~~~~~~~~ 315 (325)
|+++.++.||+|+-| +.|+|++.|+|+++.+....|..
T Consensus 883 HNLdVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~~~~S~Tg 926 (935)
T COG0178 883 HNLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAKVKASYTG 926 (935)
T ss_pred cccceEeecCEEEEcCCCCCCCCceEEEecCHHHHHhCccchhH
Confidence 999999999999999 46899999999999876555543
No 408
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.85 E-value=1.3e-21 Score=172.30 Aligned_cols=144 Identities=19% Similarity=0.246 Sum_probs=101.0
Q ss_pred CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHHH
Q 020527 96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKS 174 (325)
Q Consensus 96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~e 174 (325)
.+++|++++. |++++|+||||||||||+|+|+|... +.+.|.++... .+++|...+| ..|+.|
T Consensus 15 ~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~---------~~~~q~~~l~~~~~~~d 78 (199)
T cd03283 15 RVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCAS---------SFELPPVKIFTSIRVSD 78 (199)
T ss_pred eecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecC---------ccCcccceEEEeccchh
Confidence 4788887765 79999999999999999999988553 22355554321 3567755566 689999
Q ss_pred HHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHH
Q 020527 175 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 254 (325)
Q Consensus 175 nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~ 254 (325)
|+.++... ...+. ..+.+.++... + .+|+++|+||||+++|+....
T Consensus 79 ~l~~~~s~--~~~e~------~~~~~iL~~~~-----------~---------------~~p~llllDEp~~glD~~~~~ 124 (199)
T cd03283 79 DLRDGISY--FYAEL------RRLKEIVEKAK-----------K---------------GEPVLFLLDEIFKGTNSRERQ 124 (199)
T ss_pred ccccccCh--HHHHH------HHHHHHHHhcc-----------C---------------CCCeEEEEecccCCCCHHHHH
Confidence 99886321 11111 12344444332 1 799999999999999999887
Q ss_pred HHH-HHHHHhhccCCCCeEEEEEecCchHHHh---cCEEEEE
Q 020527 255 YVK-GVLHALRNDCKTKRTVIVIAHRLSTIKA---VDRIVVI 292 (325)
Q Consensus 255 ~i~-~~l~~l~~~~~~g~tvi~vtH~~~~~~~---~d~v~~l 292 (325)
.+. .+++.+.+ .+.++|++||+++.+.. .++|-.+
T Consensus 125 ~l~~~ll~~l~~---~~~tiiivTH~~~~~~~~~~~~~v~~~ 163 (199)
T cd03283 125 AASAAVLKFLKN---KNTIGIISTHDLELADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHHHHHH---CCCEEEEEcCcHHHHHhhhcCCCeEEE
Confidence 765 46777754 37899999999998754 3455443
No 409
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.84 E-value=2.8e-21 Score=170.53 Aligned_cols=155 Identities=12% Similarity=0.104 Sum_probs=104.9
Q ss_pred eeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcC-CCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHh
Q 020527 99 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL-YEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIM 177 (325)
Q Consensus 99 ~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl-~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~ 177 (325)
-..++++.+|++++|+||||||||||+++|++. +.+..|.... . .+..+++..|... .....+++.
T Consensus 20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~----------~-~~~~i~~~dqi~~--~~~~~d~i~ 86 (202)
T cd03243 20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP----------A-ESASIPLVDRIFT--RIGAEDSIS 86 (202)
T ss_pred EeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc----------c-cccccCCcCEEEE--EecCccccc
Confidence 444556678999999999999999999999953 3333332110 0 1223444333221 111111111
Q ss_pred cCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHH
Q 020527 178 YGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 257 (325)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~ 257 (325)
.+ ...+|.+++| +..+.+++.+|+++|+||||+++|+.....+.
T Consensus 87 ~~-----------------------------------~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~ 130 (202)
T cd03243 87 DG-----------------------------------RSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIA 130 (202)
T ss_pred CC-----------------------------------ceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHH
Confidence 00 0235666665 66667888999999999999999999887775
Q ss_pred H-HHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHH
Q 020527 258 G-VLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAE 305 (325)
Q Consensus 258 ~-~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~ 305 (325)
. +++.+.+ .+.++|++||+.+.+..|+++..++.|++...++..+
T Consensus 131 ~~ll~~l~~---~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 131 YAVLEHLLE---KGCRTLFATHFHELADLPEQVPGVKNLHMEELITTGG 176 (202)
T ss_pred HHHHHHHHh---cCCeEEEECChHHHHHHhhcCCCeEEEEEEEEecCCe
Confidence 5 4566653 3789999999998888899999999999988776533
No 410
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=2.2e-19 Score=165.38 Aligned_cols=74 Identities=22% Similarity=0.327 Sum_probs=62.2
Q ss_pred CCChHHHHHHHHHHHHc---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hc
Q 020527 217 LLSGGQKQRIAIARAIL---------RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AV 286 (325)
Q Consensus 217 ~LSgGq~QRv~iAral~---------~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~ 286 (325)
.+|+||+|+++|||+|+ .+|+++|+||||++||+..+..+.+.+.++ + .+++++|+...+. .|
T Consensus 183 ~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~------~-q~ii~~~~~~~~~~~~ 255 (270)
T cd03242 183 FGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR------V-QTFVTTTDLADFDALW 255 (270)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC------C-CEEEEeCCchhccchh
Confidence 48999999999999985 799999999999999999999998888765 2 3566666666554 36
Q ss_pred ---CEEEEEeCCEE
Q 020527 287 ---DRIVVIDDGRI 297 (325)
Q Consensus 287 ---d~v~~l~~G~i 297 (325)
++++.+++|++
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 78999999986
No 411
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=8.4e-21 Score=178.78 Aligned_cols=203 Identities=19% Similarity=0.339 Sum_probs=134.8
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHc--CCCCCCCeEEECCEeCCCCCHHH---
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR--LYEPSDGQIYIDGFPLTDLDIRW--- 153 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~g--l~~~~~G~I~i~g~~i~~~~~~~--- 153 (325)
.|.++|.+.+-.++ ..+.|.|+.|-.|..+++|||||-||||||+-|+. +--|..=.|.+..+.+..-+...
T Consensus 264 DIKiEnF~ISA~Gk---~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~t 340 (807)
T KOG0066|consen 264 DIKIENFDISAQGK---LLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDT 340 (807)
T ss_pred cceeeeeeeecccc---eeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHH
Confidence 48999999887654 58999999999999999999999999999999873 32344445666665553221110
Q ss_pred -H---hcceEEEccCCcC---c---cccHHHHHhcCCCCCCCHHHHHHHHHHc-------CHHHHHHhCCCCccc-ccCC
Q 020527 154 -L---REKIGFVGQEPQL---L---QMDIKSNIMYGCPKDVKNEDIEWAAKQA-------YVHEFILSLPCGYET-LVDD 215 (325)
Q Consensus 154 -~---r~~i~~v~Q~~~l---~---~~tv~enl~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~-~~~~ 215 (325)
+ .++..++-....| + ..|+.|-+.- +..-++.. .....+..++..-.. .+..
T Consensus 341 vl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~----------v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt 410 (807)
T KOG0066|consen 341 VLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKE----------VADELRAIGADSAEARARRILAGLGFSKEMQERPT 410 (807)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHH----------HHHHHHHhccccchhHHHHHHhhcCCChhHhcCCc
Confidence 0 1122222221111 1 1233332210 00011111 111222222211111 1112
Q ss_pred CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeC
Q 020527 216 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD 294 (325)
Q Consensus 216 ~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~ 294 (325)
..+|||-|-||+|||||..+|-+|.|||||+.||......+-+.|..| .+|+++||||-.++.. |..|+.+++
T Consensus 411 ~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW------kKTLLIVSHDQgFLD~VCtdIIHLD~ 484 (807)
T KOG0066|consen 411 TKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW------KKTLLIVSHDQGFLDSVCTDIIHLDN 484 (807)
T ss_pred cccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh------hheeEEEecccchHHHHHHHHhhhhh
Confidence 469999999999999999999999999999999999988888888777 3599999999999975 999999999
Q ss_pred CEEEEE
Q 020527 295 GRIIEV 300 (325)
Q Consensus 295 G~i~~~ 300 (325)
.++..+
T Consensus 485 qkLhyY 490 (807)
T KOG0066|consen 485 QKLHYY 490 (807)
T ss_pred hhhhhh
Confidence 887543
No 412
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.80 E-value=2.7e-19 Score=187.53 Aligned_cols=106 Identities=30% Similarity=0.465 Sum_probs=92.7
Q ss_pred HHHhCCCCcc-cccCCCCCChHHHHHHHHHHHHcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEe
Q 020527 201 FILSLPCGYE-TLVDDDLLSGGQKQRIAIARAILRDP--AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIA 277 (325)
Q Consensus 201 ~~~~~~~~~~-~~~~~~~LSgGq~QRv~iAral~~~p--~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vt 277 (325)
+++.+..++. ......+|||||+|||+|||||+.+| +++||||||++||+.....+.++|+++++ .|.|||+|+
T Consensus 472 ~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~---~G~TVIvVe 548 (943)
T PRK00349 472 FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRD---LGNTLIVVE 548 (943)
T ss_pred HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHh---CCCEEEEEe
Confidence 4566555433 23445789999999999999999997 99999999999999999999999999964 488999999
Q ss_pred cCchHHHhcCEEEEE------eCCEEEEEcChHHHhhc
Q 020527 278 HRLSTIKAVDRIVVI------DDGRIIEVGNHAELLHK 309 (325)
Q Consensus 278 H~~~~~~~~d~v~~l------~~G~i~~~g~~~~l~~~ 309 (325)
||++.+..||+|++| ++|+++..|+++++...
T Consensus 549 H~~~~i~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~~ 586 (943)
T PRK00349 549 HDEDTIRAADYIVDIGPGAGVHGGEVVASGTPEEIMKN 586 (943)
T ss_pred CCHHHHHhCCEEEEeccccCCCCCEEeeccCHHHHhcC
Confidence 999998789999999 99999999999998654
No 413
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.79 E-value=4.3e-19 Score=185.76 Aligned_cols=105 Identities=30% Similarity=0.452 Sum_probs=90.9
Q ss_pred HHhCCCCcc-cccCCCCCChHHHHHHHHHHHHcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEec
Q 020527 202 ILSLPCGYE-TLVDDDLLSGGQKQRIAIARAILRDP--AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH 278 (325)
Q Consensus 202 ~~~~~~~~~-~~~~~~~LSgGq~QRv~iAral~~~p--~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH 278 (325)
+..+..++. ......+|||||+|||.|||||+.+| +++||||||+|||+.....+.++|+++++ +|.|||+|+|
T Consensus 471 L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~---~G~TVIvVeH 547 (924)
T TIGR00630 471 LIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRD---LGNTVIVVEH 547 (924)
T ss_pred HhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHh---CCCEEEEEEC
Confidence 444444433 23345789999999999999999986 89999999999999999999999999974 4889999999
Q ss_pred CchHHHhcCEEEEE------eCCEEEEEcChHHHhhc
Q 020527 279 RLSTIKAVDRIVVI------DDGRIIEVGNHAELLHK 309 (325)
Q Consensus 279 ~~~~~~~~d~v~~l------~~G~i~~~g~~~~l~~~ 309 (325)
|++.+..||+|++| ++|+|+..|+++++...
T Consensus 548 d~~~i~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~~~ 584 (924)
T TIGR00630 548 DEETIRAADYVIDIGPGAGIHGGEVVASGTPEEILAN 584 (924)
T ss_pred CHHHHhhCCEEEEecccccCCCCEEeeccCHHHHhcC
Confidence 99998889999999 99999999999998643
No 414
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.79 E-value=1.6e-18 Score=163.11 Aligned_cols=197 Identities=22% Similarity=0.359 Sum_probs=143.6
Q ss_pred EECCCCCCCCceeeeeEEeeCCc-----EEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 020527 87 FHYPSRPTVPILNHVCLTIEANE-----VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 161 (325)
Q Consensus 87 ~~y~~~~~~~iL~~isl~i~~Ge-----~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v 161 (325)
++|++- +.-+.+..|.|+.|+ ++..+|+||.|||||+++++|.++|++| .++..+ .|+|=
T Consensus 343 y~Yp~m--~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~------~e~p~l-------nVSyk 407 (592)
T KOG0063|consen 343 YSYPKM--KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEG------GEIPVL-------NVSYK 407 (592)
T ss_pred eccCcc--eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCcc------Cccccc-------ceecc
Confidence 346542 457889999999986 5789999999999999999999999977 122222 47787
Q ss_pred ccCCcC-ccccHHHHHhcCC-CCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEE
Q 020527 162 GQEPQL-LQMDIKSNIMYGC-PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 239 (325)
Q Consensus 162 ~Q~~~l-~~~tv~enl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ll 239 (325)
||...- +.+||++-+.--. ........+.+..+-..+++.+++-. .+|||||.|||++|-+|=..++++
T Consensus 408 pqkispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~ie~i~dqev---------q~lSggelQRval~KOGGKpAdvY 478 (592)
T KOG0063|consen 408 PQKISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPLQIENIIDQEV---------QGLSGGELQRVALALCLGKPADVY 478 (592)
T ss_pred ccccCccccchHHHHHHHHhHhhhcCHHHHHhhhhhhhHHHHHhHHh---------hcCCchhhHHHHHHHhcCCCCceE
Confidence 887544 5678887653210 01122334455566666666665433 469999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCC--EEEEEcChHHHhhc
Q 020527 240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG--RIIEVGNHAELLHK 309 (325)
Q Consensus 240 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G--~i~~~g~~~~l~~~ 309 (325)
+.|||.+-||.+.+...-..++++-= ..++|-.+|.||.-.+.. +|||++.+.- .....-+|..++..
T Consensus 479 liDEpsAylDSeQRi~AskvikRfil--hakktafvVEhdfImaTYladrvivf~G~ps~~~~a~~p~~Ll~g 549 (592)
T KOG0063|consen 479 LIDEPSAYLDSEQRIIASKVIKRFIL--HAKKTAFVVEHDFIMATYLADRVIVFEGQPSVNTVANSPQSLLAG 549 (592)
T ss_pred EecCchhhcChHHHHHHHHHHHHHHH--hccchhhhhhhHHHHHHhhcceeEEEecCcccccccCChhHHHHH
Confidence 99999999999998877777777643 246799999999988876 9999999742 22333455555544
No 415
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.79 E-value=4.3e-19 Score=156.71 Aligned_cols=139 Identities=19% Similarity=0.235 Sum_probs=98.9
Q ss_pred CCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHH
Q 020527 95 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIK 173 (325)
Q Consensus 95 ~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~ 173 (325)
..+.+|++|++++|++++|+||||+||||++++++++. +..++|+-. |..+ ..++.
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~---------------------~la~~G~~v--pa~~~~l~~~ 72 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA---------------------IMAQIGCFV--PAEYATLPIF 72 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH---------------------HHHHcCCCc--chhhcCccCh
Confidence 36899999999999999999999999999999999874 122333211 2222 45777
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHH
Q 020527 174 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 253 (325)
Q Consensus 174 enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~ 253 (325)
|+|...... .+... .+.+.+|+|++|+ ..+-+++.+|+++|+|||++|+|+...
T Consensus 73 d~I~~~~~~---~d~~~----------------------~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~ 126 (204)
T cd03282 73 NRLLSRLSN---DDSME----------------------RNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADG 126 (204)
T ss_pred hheeEecCC---ccccc----------------------hhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHH
Confidence 777542110 00000 0013589999976 455668899999999999999999765
Q ss_pred HHH-HHHHHHhhccCCCCeEEEEEecCchHHHh
Q 020527 254 HYV-KGVLHALRNDCKTKRTVIVIAHRLSTIKA 285 (325)
Q Consensus 254 ~~i-~~~l~~l~~~~~~g~tvi~vtH~~~~~~~ 285 (325)
..+ ..+++.+.+ .+.++|++||+.+.+..
T Consensus 127 ~~l~~~il~~l~~---~~~~~i~~TH~~~l~~~ 156 (204)
T cd03282 127 FAISLAILECLIK---KESTVFFATHFRDIAAI 156 (204)
T ss_pred HHHHHHHHHHHHh---cCCEEEEECChHHHHHH
Confidence 554 455666654 37899999999998765
No 416
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.77 E-value=2.9e-18 Score=157.27 Aligned_cols=142 Identities=21% Similarity=0.289 Sum_probs=102.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCC-HHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHH
Q 020527 109 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNE 187 (325)
Q Consensus 109 e~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~-~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~ 187 (325)
..++|+||||||||||+++|+|+++|++|+|.++|+++...+ ..++...++++||+......+|.||.. +
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~--------k- 182 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCP--------K- 182 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccch--------H-
Confidence 578999999999999999999999999999999999987553 456667788999965322445554410 0
Q ss_pred HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccC
Q 020527 188 DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 267 (325)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~ 267 (325)
..| ..+++|+ .+|+++|+|||++ .+.+..+++.+.
T Consensus 183 -------------------------------~~~---~~~~i~~--~~P~villDE~~~------~e~~~~l~~~~~--- 217 (270)
T TIGR02858 183 -------------------------------AEG---MMMLIRS--MSPDVIVVDEIGR------EEDVEALLEALH--- 217 (270)
T ss_pred -------------------------------HHH---HHHHHHh--CCCCEEEEeCCCc------HHHHHHHHHHHh---
Confidence 011 1333344 5999999999974 233455555553
Q ss_pred CCCeEEEEEecCchH--H------------HhcCEEEEEeCCEEEEEcChHHHh
Q 020527 268 KTKRTVIVIAHRLST--I------------KAVDRIVVIDDGRIIEVGNHAELL 307 (325)
Q Consensus 268 ~~g~tvi~vtH~~~~--~------------~~~d~v~~l~~G~i~~~g~~~~l~ 307 (325)
.|.++|++||+.+. + ..+||+++|++|+ ..|++++++
T Consensus 218 -~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i~ 268 (270)
T TIGR02858 218 -AGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAVY 268 (270)
T ss_pred -CCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeecc
Confidence 48899999998765 3 2279999999886 667766654
No 417
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.77 E-value=1.4e-18 Score=154.89 Aligned_cols=155 Identities=17% Similarity=0.209 Sum_probs=102.5
Q ss_pred CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHHH
Q 020527 96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKS 174 (325)
Q Consensus 96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~e 174 (325)
.+.+|++++.++ ++++|+|||||||||++|+++++.-.. + .|..+ +. .+..+++++| +| ..++.|
T Consensus 19 ~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~--~---~g~~v---p~--~~~~i~~~~~---i~~~~~~~~ 84 (216)
T cd03284 19 FVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLA--Q---IGSFV---PA--SKAEIGVVDR---IFTRIGASD 84 (216)
T ss_pred eEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHh--c---cCCee---cc--ccceecceee---EeccCCchh
Confidence 588999999887 999999999999999999998754221 1 11111 11 1345777754 34 456666
Q ss_pred HHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH--cCCCCEEEEeCC---CCCCC
Q 020527 175 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI--LRDPAILLLDEA---TSALD 249 (325)
Q Consensus 175 nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral--~~~p~llllDEP---ts~LD 249 (325)
|+..+. |.=...+..+++++ +.+|+++|+||| |+++|
T Consensus 85 ~ls~g~--------------------------------------s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD 126 (216)
T cd03284 85 DLAGGR--------------------------------------STFMVEMVETANILNNATERSLVLLDEIGRGTSTYD 126 (216)
T ss_pred hhccCc--------------------------------------chHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHH
Confidence 665441 11122223344333 579999999999 99999
Q ss_pred HHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHH
Q 020527 250 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAEL 306 (325)
Q Consensus 250 ~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l 306 (325)
.... ...+++.+.+. .+.++|++||+.+....+|++..+.+|++...++.+++
T Consensus 127 ~~~~--~~~il~~l~~~--~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 127 GLSI--AWAIVEYLHEK--IGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred HHHH--HHHHHHHHHhc--cCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 8652 23344444431 26799999999876667888777788887766655554
No 418
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.72 E-value=7.3e-18 Score=132.77 Aligned_cols=76 Identities=22% Similarity=0.177 Sum_probs=69.2
Q ss_pred CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHH
Q 020527 96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSN 175 (325)
Q Consensus 96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~en 175 (325)
.+|+++||++++|++++|+||||||||||++++. +|++.++|.++..++....++.++++||+ +|..|++||
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~N 74 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRLN 74 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHhh
Confidence 5899999999999999999999999999999986 89999999999887777777778888888 889999999
Q ss_pred HhcC
Q 020527 176 IMYG 179 (325)
Q Consensus 176 l~~~ 179 (325)
|.+.
T Consensus 75 i~~~ 78 (107)
T cd00820 75 IFLI 78 (107)
T ss_pred ceee
Confidence 9763
No 419
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.70 E-value=1.2e-17 Score=151.53 Aligned_cols=190 Identities=19% Similarity=0.261 Sum_probs=116.6
Q ss_pred EEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeE--EECCEeCCCCCHHHHhcce---EEEc--cCCcCccc-----
Q 020527 103 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI--YIDGFPLTDLDIRWLREKI---GFVG--QEPQLLQM----- 170 (325)
Q Consensus 103 l~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I--~i~g~~i~~~~~~~~r~~i---~~v~--Q~~~l~~~----- 170 (325)
+.+.+||.++|+||+|+|||||++.+++......+++ ++....-...+..++.+.+ -++. +.|.....
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~ 90 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEM 90 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHH
Confidence 4789999999999999999999999999887654433 2221111113344433332 1111 11111000
Q ss_pred --cHHHHHh-cCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHH--------HHHHHHHHHHcCCCC
Q 020527 171 --DIKSNIM-YGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQ--------KQRIAIARAILRDPA 237 (325)
Q Consensus 171 --tv~enl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~LSgGq--------~QRv~iAral~~~p~ 237 (325)
+..++.. .|.. ..-+-+-+.+++.+++.... +..+|||+ +||+++||++..+++
T Consensus 91 ~~~~a~~~~~~G~~-------------vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gs 157 (249)
T cd01128 91 VLEKAKRLVEHGKD-------------VVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGS 157 (249)
T ss_pred HHHHHHHHHHCCCC-------------EEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCc
Confidence 1111110 0000 00000112233333333332 34689999 999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHH-HHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHH
Q 020527 238 ILLLDEATSALDSESEHY-VKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKL 316 (325)
Q Consensus 238 llllDEPts~LD~~~~~~-i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~ 316 (325)
|++| ||+.+|+.+... +. +.+++. .+.|.|++||++.....+|.|.+|+.|++ +++++..++.|+.+
T Consensus 158 It~l--~T~~~d~~~~~~~~i--~~~~~~---~~~~~ivls~~la~~~~~paI~vl~s~sr-----~~~ll~~~~~~~~~ 225 (249)
T cd01128 158 LTII--ATALVDTGSRMDDVI--FEEFKG---TGNMELVLDRRLAERRIFPAIDILKSGTR-----KEELLLDPEELQRM 225 (249)
T ss_pred eEEe--eeheecCCCcccchH--HHHHhc---CCCcEEEEchHHhhCCCCCeEEEcCCCCc-----cchhhCCHHHHHHH
Confidence 9999 999999755543 33 444432 36799999999999999999999999997 45555545455554
Q ss_pred H
Q 020527 317 V 317 (325)
Q Consensus 317 ~ 317 (325)
+
T Consensus 226 ~ 226 (249)
T cd01128 226 W 226 (249)
T ss_pred H
Confidence 3
No 420
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.69 E-value=2.7e-16 Score=139.89 Aligned_cols=135 Identities=18% Similarity=0.221 Sum_probs=92.5
Q ss_pred ceeeeeEEeeCC--cEEEEEcCCCChHHHHHHHHHc--CCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc--cc
Q 020527 97 ILNHVCLTIEAN--EVVAIVGLSGSGKSTFVNLLLR--LYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL--QM 170 (325)
Q Consensus 97 iL~~isl~i~~G--e~~~iiG~nGsGKSTLl~~l~g--l~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~--~~ 170 (325)
+-+|+++ .++ .+++|+||||+|||||||.++. ++ +..|...... ...++|..|...-+ ..
T Consensus 18 vpnd~~l--~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-----------~~~~~~~d~i~~~l~~~~ 83 (213)
T cd03281 18 VPNDTEI--GGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-----------SATIGLVDKIFTRMSSRE 83 (213)
T ss_pred EcceEEe--cCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-----------CcEEeeeeeeeeeeCCcc
Confidence 4455555 444 7899999999999999999984 33 5667654421 12477777754322 11
Q ss_pred cHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCH
Q 020527 171 DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 250 (325)
Q Consensus 171 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~ 250 (325)
++.+++ ..+ .-+.||+++|++++.+|+++|+|||++|+|+
T Consensus 84 si~~~~----------------------S~f------------------~~el~~l~~~l~~~~~~slvllDE~~~gtd~ 123 (213)
T cd03281 84 SVSSGQ----------------------SAF------------------MIDLYQVSKALRLATRRSLVLIDEFGKGTDT 123 (213)
T ss_pred Chhhcc----------------------chH------------------HHHHHHHHHHHHhCCCCcEEEeccccCCCCH
Confidence 222111 000 3456999999999999999999999999999
Q ss_pred HHH-HHHHHHHHHhhccCCCCeEEEEEecCchHHHh
Q 020527 251 ESE-HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA 285 (325)
Q Consensus 251 ~~~-~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~ 285 (325)
... ..+..+++.+.+....+.++|++||+.+.+..
T Consensus 124 ~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~ 159 (213)
T cd03281 124 EDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNR 159 (213)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHh
Confidence 754 44456788875421123589999999998764
No 421
>PRK00064 recF recombination protein F; Reviewed
Probab=99.68 E-value=9.7e-16 Score=146.71 Aligned_cols=75 Identities=25% Similarity=0.395 Sum_probs=65.0
Q ss_pred CCChHHHHHHHHHHHHc---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh--
Q 020527 217 LLSGGQKQRIAIARAIL---------RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-- 285 (325)
Q Consensus 217 ~LSgGq~QRv~iAral~---------~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-- 285 (325)
.+|.||+|+++||++|+ .+|+|+|+|||+++||+..+..+.+.+.++ +..++++||+.+.+..
T Consensus 273 ~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~------~~qv~it~~~~~~~~~~~ 346 (361)
T PRK00064 273 FGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL------GAQVFITTTDLEDLADLL 346 (361)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc------CCEEEEEcCChhhhhhhh
Confidence 49999999999999986 799999999999999999999998888654 3478999999876643
Q ss_pred -cCEEEEEeCCEE
Q 020527 286 -VDRIVVIDDGRI 297 (325)
Q Consensus 286 -~d~v~~l~~G~i 297 (325)
.++++.+++|++
T Consensus 347 ~~~~i~~v~~G~i 359 (361)
T PRK00064 347 ENAKIFHVEQGKI 359 (361)
T ss_pred ccCcEEEEeCCEE
Confidence 358999999987
No 422
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.64 E-value=2e-15 Score=156.53 Aligned_cols=152 Identities=18% Similarity=0.211 Sum_probs=99.7
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCC-cEEEEEcCCCChHHHHHHHHHcC-CCCCCCeEEECCEeCCCCCHHHHhc
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEAN-EVVAIVGLSGSGKSTFVNLLLRL-YEPSDGQIYIDGFPLTDLDIRWLRE 156 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~G-e~~~iiG~nGsGKSTLl~~l~gl-~~~~~G~I~i~g~~i~~~~~~~~r~ 156 (325)
.+.++++...+-.. .-.-.+|+++.++ ++++|+||||+|||||||+++|. +.+..|-
T Consensus 295 ~i~l~~~rhPll~~---~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~------------------ 353 (771)
T TIGR01069 295 KIILENARHPLLKE---PKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI------------------ 353 (771)
T ss_pred CEEEccccCceecC---CceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCC------------------
Confidence 46777665422110 0122478888877 89999999999999999999987 3344441
Q ss_pred ceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 020527 157 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 236 (325)
Q Consensus 157 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p 236 (325)
+||..... ...+.+++... ...+. ...+. ...+|+|++|++.+++++ .+|
T Consensus 354 ---~Vpa~~~~-~~~~~d~i~~~----i~~~~-----------si~~~----------LStfS~~m~~~~~il~~~-~~~ 403 (771)
T TIGR01069 354 ---PIPANEHS-EIPYFEEIFAD----IGDEQ-----------SIEQN----------LSTFSGHMKNISAILSKT-TEN 403 (771)
T ss_pred ---CccCCccc-cccchhheeee----cChHh-----------HHhhh----------hhHHHHHHHHHHHHHHhc-CCC
Confidence 33332210 01112222110 00100 00111 035899999999999887 789
Q ss_pred CEEEEeCCCCCCCHHHHHHH-HHHHHHhhccCCCCeEEEEEecCchHHH
Q 020527 237 AILLLDEATSALDSESEHYV-KGVLHALRNDCKTKRTVIVIAHRLSTIK 284 (325)
Q Consensus 237 ~llllDEPts~LD~~~~~~i-~~~l~~l~~~~~~g~tvi~vtH~~~~~~ 284 (325)
+++|+|||++|+|+.....+ ..++..+.+ .|.++|++||+.+...
T Consensus 404 sLvLlDE~g~GtD~~eg~ala~aiLe~l~~---~g~~viitTH~~eL~~ 449 (771)
T TIGR01069 404 SLVLFDELGAGTDPDEGSALAISILEYLLK---QNAQVLITTHYKELKA 449 (771)
T ss_pred cEEEecCCCCCCCHHHHHHHHHHHHHHHHh---cCCEEEEECChHHHHH
Confidence 99999999999999999888 467777754 4789999999988643
No 423
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.64 E-value=2.4e-16 Score=137.24 Aligned_cols=70 Identities=17% Similarity=0.175 Sum_probs=50.9
Q ss_pred CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHH-HHHHHhhccCCCCeEEEEEecCchHHHhcCE
Q 020527 216 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK-GVLHALRNDCKTKRTVIVIAHRLSTIKAVDR 288 (325)
Q Consensus 216 ~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~-~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~ 288 (325)
+.+|+|++|...+++. +.+|+++|+|||++++|+.....+. .+++.+.++ .+.++|++||+++....||+
T Consensus 60 s~fs~~~~~l~~~l~~-~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~--~~~~iii~TH~~~l~~~~~~ 130 (185)
T smart00534 60 STFMVEMKETANILKN-ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEK--IGALTLFATHYHELTKLADE 130 (185)
T ss_pred cHHHHHHHHHHHHHHh-CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhc--CCCeEEEEecHHHHHHHhhc
Confidence 3478887774333332 3499999999999999999777664 556666531 36799999999976666764
No 424
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.62 E-value=1.2e-15 Score=136.14 Aligned_cols=72 Identities=26% Similarity=0.516 Sum_probs=56.7
Q ss_pred CCChHHHHHHHHHHHH----cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEE
Q 020527 217 LLSGGQKQRIAIARAI----LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 292 (325)
Q Consensus 217 ~LSgGq~QRv~iAral----~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l 292 (325)
.||||||.+++||--| ..+++++|||||.++||...+..+.++|.++.+ +.-+|++||+...+..||+.+.+
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~----~~Q~ii~Th~~~~~~~a~~~~~v 211 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK----QSQFIITTHNPEMFEDADKLIGV 211 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT----TSEEEEE-S-HHHHTT-SEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc----ccccccccccccccccccccccc
Confidence 6999999999998655 468899999999999999999999999998853 45799999999999999987655
No 425
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.59 E-value=4.6e-14 Score=137.46 Aligned_cols=171 Identities=22% Similarity=0.262 Sum_probs=118.1
Q ss_pred CCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEe---CCC-----CCHHHHhcceEEEccCCc
Q 020527 95 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP---LTD-----LDIRWLREKIGFVGQEPQ 166 (325)
Q Consensus 95 ~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~---i~~-----~~~~~~r~~i~~v~Q~~~ 166 (325)
..+++++ |.+.+|++++|+|+||+|||||+++|+|+.+|+.|.|.+.|++ +.+ ++...+++.|.++.+...
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~ 224 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQ 224 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCC
Confidence 3589999 9999999999999999999999999999999999999996544 332 233446778898875431
Q ss_pred --Cc-------cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCC-hHHHHH-HHHHHHHcCC
Q 020527 167 --LL-------QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLS-GGQKQR-IAIARAILRD 235 (325)
Q Consensus 167 --l~-------~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LS-gGq~QR-v~iAral~~~ 235 (325)
+. ..|+.|+.+ . .|.+..+-..+|+ --|-|| +++ .+.+
T Consensus 225 ~~~~r~~~~~~a~~iAEyfr--------------------------~--~g~~Vll~~Dsltr~A~A~rEisl---~~ge 273 (438)
T PRK07721 225 PALMRIKGAYTATAIAEYFR--------------------------D--QGLNVMLMMDSVTRVAMAQREIGL---AVGE 273 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHH--------------------------H--CCCcEEEEEeChHHHHHHHHHHHH---hcCC
Confidence 11 112222221 1 1222111112222 112222 111 1244
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCe-----EEEEEecCchHHHhcCEEEEEeCCEEEEEcChHH
Q 020527 236 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR-----TVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAE 305 (325)
Q Consensus 236 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~-----tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~ 305 (325)
|+ .|+|+||.....+.++++++.+. ..|. ||++.+||++. ..||++..+.+|+|+.+++..+
T Consensus 274 ~P------~~~G~dp~~~~~l~~ller~~~~-~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 274 PP------TTKGYTPSVFAILPKLLERTGTN-ASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred CC------ccccCCHHHHHHHHHHHHHhcCC-CCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEeccHHH
Confidence 54 57899999999999999998642 2575 99999999985 5699999999999999887643
No 426
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.57 E-value=2.3e-15 Score=141.97 Aligned_cols=172 Identities=25% Similarity=0.329 Sum_probs=113.4
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCC----CCHHHHhc--------------ceEEEccCCcC
Q 020527 106 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD----LDIRWLRE--------------KIGFVGQEPQL 167 (325)
Q Consensus 106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~----~~~~~~r~--------------~i~~v~Q~~~l 167 (325)
++|+..+++|.||-||||-+++++|-++|.-|.-- ++-+..+ ....++.. +..||.|-|..
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~-~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~ 176 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYD-NPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRA 176 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCC-CCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHH
Confidence 67999999999999999999999999999877431 1111110 00000000 01111111111
Q ss_pred ccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCC
Q 020527 168 LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSA 247 (325)
Q Consensus 168 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~ 247 (325)
..++|.+++.-- .......++.+...+...+++ ...+||||+-||.+||.+.++++++.++|||.+.
T Consensus 177 ~k~~v~~~l~~~----~~r~~~~~~~~~~~L~~~~~r---------e~~~lsggelqrfaia~~~vq~advyMFDEpSsY 243 (592)
T KOG0063|consen 177 VKGTVGSLLDRK----DERDNKEEVCDQLDLNNLLDR---------EVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSY 243 (592)
T ss_pred HHHHHHHHHHHH----hhcccHHHHHHHHHHhhHHHh---------hhhhcccchhhhhhhhhhhhhhcceeEecCCccc
Confidence 123444433211 001112223333333333332 1256999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeC
Q 020527 248 LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD 294 (325)
Q Consensus 248 LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~ 294 (325)
||.+.+.+--..++.+.. ...-||+|.||++.+.. .|-+.++..
T Consensus 244 LDVKQRLkaA~~IRsl~~---p~~YiIVVEHDLsVLDylSDFiCcLYG 288 (592)
T KOG0063|consen 244 LDVKQRLKAAITIRSLIN---PDRYIIVVEHDLSVLDYLSDFICCLYG 288 (592)
T ss_pred chHHHhhhHHHHHHHhhC---CCCeEEEEEeechHHHhhhcceeEEec
Confidence 999999888888888864 35689999999999976 888888863
No 427
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.56 E-value=2.2e-14 Score=157.39 Aligned_cols=122 Identities=21% Similarity=0.249 Sum_probs=96.4
Q ss_pred CccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC-CCCCChHHHH------HHHHHHHHcCCCCEE
Q 020527 167 LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD-DDLLSGGQKQ------RIAIARAILRDPAIL 239 (325)
Q Consensus 167 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~LSgGq~Q------Rv~iAral~~~p~ll 239 (325)
.|.+|+.|||.+ .+ ..+++ ..+....+...++..++.| ++..+ ...||||||| |++||||++.+|++|
T Consensus 1153 ~~~~~~~~~i~~-~~-~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il 1227 (1311)
T TIGR00606 1153 TYRGQDIEYIEI-RS-DADEN--VSASDKRRNYNYRVVMLKG-DTALDMRGRCSAGQKVLASLIIRLALAETFCLNCGII 1227 (1311)
T ss_pred HcCccHHHHhhc-CC-CCChH--HHHHHHcCchHHHhccCCC-CeecCCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEE
Confidence 378999999998 33 33333 4566777888888888877 55554 3689999999 999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhhccC--CCCeEEEEEecCchHHHh------cCEEEEEe
Q 020527 240 LLDEATSALDSESEHYVKGVLHALRNDC--KTKRTVIVIAHRLSTIKA------VDRIVVID 293 (325)
Q Consensus 240 llDEPts~LD~~~~~~i~~~l~~l~~~~--~~g~tvi~vtH~~~~~~~------~d~v~~l~ 293 (325)
+|||||++||+.+...+.+.|..+...+ ..|.+||+||||++++.. |++.+-+.
T Consensus 1228 ~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~~~~~~~~~~ 1289 (1311)
T TIGR00606 1228 ALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRLK 1289 (1311)
T ss_pred EeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhccccceeeeee
Confidence 9999999999999999999888874211 137899999999998742 46666554
No 428
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.56 E-value=2.3e-14 Score=128.13 Aligned_cols=135 Identities=18% Similarity=0.213 Sum_probs=90.3
Q ss_pred CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHc-CCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHH
Q 020527 96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR-LYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIK 173 (325)
Q Consensus 96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~g-l~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~ 173 (325)
.+.+|+++++++|++++|+||||+||||+++++++ .+.++.|...+.. . -.++|..| +| .....
T Consensus 19 ~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~----------~~~~~~~~---i~~~~~~~ 84 (222)
T cd03287 19 FVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-S----------ATLSIFDS---VLTRMGAS 84 (222)
T ss_pred EEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-c----------eEEeccce---EEEEecCc
Confidence 58999999999999999999999999999999999 6778888765432 1 12444333 22 22222
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCCh--HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH
Q 020527 174 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSG--GQKQRIAIARAILRDPAILLLDEATSALDSE 251 (325)
Q Consensus 174 enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSg--Gq~QRv~iAral~~~p~llllDEPts~LD~~ 251 (325)
|++.-+ +|- .|-+|+.-+-.-+.+|+++|+|||.+|.|+.
T Consensus 85 d~~~~~--------------------------------------~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~ 126 (222)
T cd03287 85 DSIQHG--------------------------------------MSTFMVELSETSHILSNCTSRSLVILDELGRGTSTH 126 (222)
T ss_pred cccccc--------------------------------------cchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCChh
Confidence 222111 111 1223333222335689999999998888866
Q ss_pred HHHHH-HHHHHHhhccCCCCeEEEEEecCchHHH
Q 020527 252 SEHYV-KGVLHALRNDCKTKRTVIVIAHRLSTIK 284 (325)
Q Consensus 252 ~~~~i-~~~l~~l~~~~~~g~tvi~vtH~~~~~~ 284 (325)
....+ ..+++.+.+. .+.++|++||+.+...
T Consensus 127 d~~~i~~~il~~l~~~--~~~~~i~~TH~~~l~~ 158 (222)
T cd03287 127 DGIAIAYATLHYLLEE--KKCLVLFVTHYPSLGE 158 (222)
T ss_pred hHHHHHHHHHHHHHhc--cCCeEEEEcccHHHHH
Confidence 55553 4566666542 3789999999998754
No 429
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.54 E-value=4.8e-15 Score=131.68 Aligned_cols=44 Identities=23% Similarity=0.335 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHhhc
Q 020527 222 QKQRIAIARAILRDPAILLLDEAT-----SALDSESEHYVKGVLHALRN 265 (325)
Q Consensus 222 q~QRv~iAral~~~p~llllDEPt-----s~LD~~~~~~i~~~l~~l~~ 265 (325)
|++++.|||+++.+|+++++|||| ++||+.+++.+.+.++++++
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999 99999999999999999853
No 430
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.53 E-value=2.4e-14 Score=144.63 Aligned_cols=76 Identities=18% Similarity=0.334 Sum_probs=69.9
Q ss_pred CCChHHHHHHHHHHHHcCC----CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEE
Q 020527 217 LLSGGQKQRIAIARAILRD----PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 292 (325)
Q Consensus 217 ~LSgGq~QRv~iAral~~~----p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l 292 (325)
.|||||+||++|||+++.. |+++||||||+|||+.+...+.+.|.++.+ +.+||+|||++..+..||++++|
T Consensus 440 ~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~----~~~vi~iTH~~~~~~~ad~~~~l 515 (563)
T TIGR00634 440 VASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE----RHQVLCVTHLPQVAAHADAHFKV 515 (563)
T ss_pred hcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc----CCEEEEEEChHHHHHhcCeEEEE
Confidence 5899999999999999985 699999999999999999999999999852 68999999999988889999999
Q ss_pred eCCE
Q 020527 293 DDGR 296 (325)
Q Consensus 293 ~~G~ 296 (325)
++|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 9864
No 431
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.52 E-value=1.1e-13 Score=144.06 Aligned_cols=77 Identities=18% Similarity=0.229 Sum_probs=61.5
Q ss_pred CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHH-HHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEe
Q 020527 216 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG-VLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID 293 (325)
Q Consensus 216 ~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~-~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~ 293 (325)
+.+|+|++|++.|++++ .+|+++|+|||++|+||.....+.. ++..+.+ .|.++|++||+.+.... +++..++
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~---~~~~vIitTH~~el~~~~~~~~~v~- 463 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRK---RGAKIIATTHYKELKALMYNREGVE- 463 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHH---CCCEEEEECChHHHHHHHhcCCCeE-
Confidence 45899999999999999 8999999999999999998887754 5666653 47899999999888765 5554443
Q ss_pred CCEE
Q 020527 294 DGRI 297 (325)
Q Consensus 294 ~G~i 297 (325)
++.+
T Consensus 464 ~~~~ 467 (782)
T PRK00409 464 NASV 467 (782)
T ss_pred EEEE
Confidence 3444
No 432
>PRK10869 recombination and repair protein; Provisional
Probab=99.49 E-value=9.7e-14 Score=139.56 Aligned_cols=75 Identities=20% Similarity=0.339 Sum_probs=68.9
Q ss_pred CChHHHHHHHHHHHHcC----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEe
Q 020527 218 LSGGQKQRIAIARAILR----DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVID 293 (325)
Q Consensus 218 LSgGq~QRv~iAral~~----~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~ 293 (325)
|||||+||++||++++. +|+++|||||++|||+.+...+.+.|+++.+ +.+||+|||++..+..||+++.+.
T Consensus 431 lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~----~~qvi~iTH~~~~~~~ad~~~~v~ 506 (553)
T PRK10869 431 ASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE----STQVMCVTHLPQVAGCGHQHFFVS 506 (553)
T ss_pred CCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc----CCEEEEEecCHHHHHhCCEEEEEe
Confidence 79999999999999996 6899999999999999999999999999853 579999999999888899999998
Q ss_pred CCE
Q 020527 294 DGR 296 (325)
Q Consensus 294 ~G~ 296 (325)
++.
T Consensus 507 k~~ 509 (553)
T PRK10869 507 KET 509 (553)
T ss_pred ccc
Confidence 753
No 433
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.47 E-value=6.6e-14 Score=141.47 Aligned_cols=77 Identities=32% Similarity=0.498 Sum_probs=68.5
Q ss_pred CCCChHHHHHHHHHHHHc----------CCCCEEEEeCCC-CCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH
Q 020527 216 DLLSGGQKQRIAIARAIL----------RDPAILLLDEAT-SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK 284 (325)
Q Consensus 216 ~~LSgGq~QRv~iAral~----------~~p~llllDEPt-s~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~ 284 (325)
..|||||+||++|||||+ .+|+++|||||| ++||+.+...+.+.|.++ + +.|||+|||+.+...
T Consensus 467 ~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~-~----~~~iiiish~~~~~~ 541 (562)
T PHA02562 467 ASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL-K----DTNVFVISHKDHDPQ 541 (562)
T ss_pred hhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC-C----CCeEEEEECchhchh
Confidence 469999999999999987 599999999998 789999999999999887 2 679999999988777
Q ss_pred hcCEEEEEeC-CEE
Q 020527 285 AVDRIVVIDD-GRI 297 (325)
Q Consensus 285 ~~d~v~~l~~-G~i 297 (325)
.||++++|.+ |+.
T Consensus 542 ~~d~~~~l~~~~~~ 555 (562)
T PHA02562 542 KFDRHLKMEKVGRF 555 (562)
T ss_pred hhhcEEEEEEECCe
Confidence 8999999986 544
No 434
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.44 E-value=1.6e-12 Score=116.95 Aligned_cols=158 Identities=14% Similarity=0.240 Sum_probs=93.5
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHH-HHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTF-VNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTL-l~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
+.++++.+.+++ .+++|++++|.|+|||||||| ++++.++.++....+++.... ++.++
T Consensus 8 ~~~~~ld~~l~g------------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~----~~~~~---- 67 (230)
T PRK08533 8 LSRDELHKRLGG------------GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQL----TTTEF---- 67 (230)
T ss_pred EEEeeeehhhCC------------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC----CHHHH----
Confidence 567777777654 278999999999999999999 699998876544444443211 11111
Q ss_pred EEEccCCcCccccHHHHH-hcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc----
Q 020527 159 GFVGQEPQLLQMDIKSNI-MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL---- 233 (325)
Q Consensus 159 ~~v~Q~~~l~~~tv~enl-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~---- 233 (325)
.++. .+|. . +......-.+ . + ... ...+|+++.++-.+++.+-
T Consensus 68 --------------~~~~~~~g~--~-----~~~~~~~~~l----~-----~-~~~-~~~~~~~~~~~~~l~~il~~~~~ 115 (230)
T PRK08533 68 --------------IKQMMSLGY--D-----INKKLISGKL----L-----Y-IPV-YPLLSGNSEKRKFLKKLMNTRRF 115 (230)
T ss_pred --------------HHHHHHhCC--c-----hHHHhhcCcE----E-----E-EEe-cccccChHHHHHHHHHHHHHHHh
Confidence 1111 1110 0 0000000000 0 0 000 0125666655555555443
Q ss_pred CCCCEEEEeCCCCCC----CHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHH--------Hh-cCEEEEEe
Q 020527 234 RDPAILLLDEATSAL----DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI--------KA-VDRIVVID 293 (325)
Q Consensus 234 ~~p~llllDEPts~L----D~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~--------~~-~d~v~~l~ 293 (325)
.+|+++++||||+++ |+...+.+.+.++.+++ .|.|+ ++||+.... .. ||-|+.|+
T Consensus 116 ~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~---~g~tv-i~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 116 YEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISS---LNKVI-ILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred cCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHh---CCCEE-EEEecccccccccceeEEEeeeEEEEEE
Confidence 369999999999999 88878888998888864 36655 556665432 22 67788776
No 435
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.44 E-value=8.8e-13 Score=133.04 Aligned_cols=111 Identities=34% Similarity=0.501 Sum_probs=96.3
Q ss_pred HHHHhCCCCcccccCC-CCCChHHHHHHHHHHHHcCC--CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEE
Q 020527 200 EFILSLPCGYETLVDD-DLLSGGQKQRIAIARAILRD--PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVI 276 (325)
Q Consensus 200 ~~~~~~~~~~~~~~~~-~~LSgGq~QRv~iAral~~~--p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~v 276 (325)
.++.....+|.+.-+. ..|||||.||+-||.-+=.. -=+++||||+.||-+..-.++++.|+.++. .|-|+|+|
T Consensus 463 ~fL~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRD---lGNTviVV 539 (935)
T COG0178 463 GFLVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRD---LGNTVIVV 539 (935)
T ss_pred HHHHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHh---cCCeEEEE
Confidence 3566677788776654 68999999999999999764 458999999999999999999999999975 58899999
Q ss_pred ecCchHHHhcCEEEEE------eCCEEEEEcChHHHhhcCHHH
Q 020527 277 AHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLHKGRLY 313 (325)
Q Consensus 277 tH~~~~~~~~d~v~~l------~~G~i~~~g~~~~l~~~~~~~ 313 (325)
.||.+.+..||+|+-| +.|+|++.|+|+++++++...
T Consensus 540 EHDedti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~~Sl 582 (935)
T COG0178 540 EHDEDTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLANPESL 582 (935)
T ss_pred ecCHHHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHhCCcch
Confidence 9999999999999998 578999999999999876433
No 436
>PRK13695 putative NTPase; Provisional
Probab=99.44 E-value=1.7e-13 Score=117.96 Aligned_cols=77 Identities=19% Similarity=0.270 Sum_probs=61.8
Q ss_pred CCChHHHHHHHHHHHHcCCCCEEEEeC--CCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeC
Q 020527 217 LLSGGQKQRIAIARAILRDPAILLLDE--ATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 294 (325)
Q Consensus 217 ~LSgGq~QRv~iAral~~~p~llllDE--Pts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~ 294 (325)
.+||+++-++.+++..+.+|+++++|| |+..+|+.. .+.+.++.+ .+.++|+++|+-.....+|++..+.+
T Consensus 78 ~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~----~~~l~~~~~---~~~~~i~v~h~~~~~~~~~~i~~~~~ 150 (174)
T PRK13695 78 NLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKF----VKAVEEVLD---SEKPVIATLHRRSVHPFVQEIKSRPG 150 (174)
T ss_pred ehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHH----HHHHHHHHh---CCCeEEEEECchhhHHHHHHHhccCC
Confidence 489999999999999999999999999 555566544 455555442 37799999999655566999999999
Q ss_pred CEEEEE
Q 020527 295 GRIIEV 300 (325)
Q Consensus 295 G~i~~~ 300 (325)
|+|.+.
T Consensus 151 ~~i~~~ 156 (174)
T PRK13695 151 GRVYEL 156 (174)
T ss_pred cEEEEE
Confidence 999775
No 437
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.43 E-value=4.1e-13 Score=144.64 Aligned_cols=78 Identities=26% Similarity=0.336 Sum_probs=71.2
Q ss_pred CCCCChHHHHHHHHHHHHcC----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH
Q 020527 215 DDLLSGGQKQRIAIARAILR----------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK 284 (325)
Q Consensus 215 ~~~LSgGq~QRv~iAral~~----------~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~ 284 (325)
...|||||++||+||+||+. +|++||+||||++||+.+...+++.|..+.. .|++|++|||++++..
T Consensus 948 ~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~---~g~~i~iisH~~~~~~ 1024 (1042)
T TIGR00618 948 SATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIRE---GSKMIGIISHVPEFRE 1024 (1042)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCcHHHHH
Confidence 36799999999999999985 7999999999999999999999999999974 4889999999999986
Q ss_pred h-cCEEEEEeCC
Q 020527 285 A-VDRIVVIDDG 295 (325)
Q Consensus 285 ~-~d~v~~l~~G 295 (325)
. ||+|.|++.|
T Consensus 1025 ~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1025 RIPHRILVKKTN 1036 (1042)
T ss_pred hhCCEEEEEECC
Confidence 5 9999999754
No 438
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.40 E-value=2.8e-12 Score=114.34 Aligned_cols=138 Identities=16% Similarity=0.181 Sum_probs=89.0
Q ss_pred CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCC-CCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHH
Q 020527 96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIK 173 (325)
Q Consensus 96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~-~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~ 173 (325)
.+-+|++|++++|++++|.||||+||||+++++++..-.. .|- .+. .+ ..+++++ ..+| .....
T Consensus 18 ~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~------~vp---a~--~~~i~~~---~~i~~~~~~~ 83 (218)
T cd03286 18 FVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGM------DVP---AK--SMRLSLV---DRIFTRIGAR 83 (218)
T ss_pred eEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCC------ccC---cc--ccEeccc---cEEEEecCcc
Confidence 5889999999999999999999999999999998864321 121 111 00 1112222 1222 23333
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHH
Q 020527 174 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 253 (325)
Q Consensus 174 enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~ 253 (325)
|++..+... + .-|-+++.-.-..+.+|+++|+|||++|+|+...
T Consensus 84 d~~~~~~St-----------------------------------F-~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg 127 (218)
T cd03286 84 DDIMKGEST-----------------------------------F-MVELSETANILRHATPDSLVILDELGRGTSTHDG 127 (218)
T ss_pred cccccCcch-----------------------------------H-HHHHHHHHHHHHhCCCCeEEEEecccCCCCchHH
Confidence 444322100 0 0122333222233468999999999999999988
Q ss_pred HHHHHH-HHHhhccCCCCeEEEEEecCchHHHh
Q 020527 254 HYVKGV-LHALRNDCKTKRTVIVIAHRLSTIKA 285 (325)
Q Consensus 254 ~~i~~~-l~~l~~~~~~g~tvi~vtH~~~~~~~ 285 (325)
..+... ++.+.+. .+.++|++||+++.+..
T Consensus 128 ~~la~ail~~L~~~--~~~~~i~~TH~~el~~~ 158 (218)
T cd03286 128 YAIAHAVLEYLVKK--VKCLTLFSTHYHSLCDE 158 (218)
T ss_pred HHHHHHHHHHHHHh--cCCcEEEEeccHHHHHH
Confidence 887777 6666542 37899999999998754
No 439
>PRK03918 chromosome segregation protein; Provisional
Probab=99.38 E-value=1.1e-12 Score=139.19 Aligned_cols=76 Identities=25% Similarity=0.409 Sum_probs=66.9
Q ss_pred CCCChHHHH------HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEE
Q 020527 216 DLLSGGQKQ------RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI 289 (325)
Q Consensus 216 ~~LSgGq~Q------Rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v 289 (325)
..|||||+| |++||++++.+|+++|+||||++||+..+..+.++|..+.+ .+.+||+||||+++...||++
T Consensus 787 ~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~---~~~~iiiith~~~~~~~~d~~ 863 (880)
T PRK03918 787 TFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLR---KIPQVIIVSHDEELKDAADYV 863 (880)
T ss_pred hhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHh---cCCEEEEEECCHHHHHhCCeE
Confidence 469999999 55666788999999999999999999999999999988754 357999999999877779999
Q ss_pred EEEeC
Q 020527 290 VVIDD 294 (325)
Q Consensus 290 ~~l~~ 294 (325)
++|..
T Consensus 864 ~~l~~ 868 (880)
T PRK03918 864 IRVSL 868 (880)
T ss_pred EEEEe
Confidence 99983
No 440
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.37 E-value=1.1e-12 Score=123.09 Aligned_cols=144 Identities=15% Similarity=0.189 Sum_probs=99.2
Q ss_pred eeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCC
Q 020527 101 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC 180 (325)
Q Consensus 101 isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~ 180 (325)
+++.+++|+.++|+||+|||||||+++|++++++..|.+.+.+ ..++.... +..+.++.+..
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied--~~El~~~~-~~~~~l~~~~~--------------- 198 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIED--TREIFLPH-PNYVHLFYSKG--------------- 198 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcC--ccccCCCC-CCEEEEEecCC---------------
Confidence 4567889999999999999999999999999999999888853 22222111 11222211100
Q ss_pred CCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 020527 181 PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL 260 (325)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l 260 (325)
. . + . ...|- .-.++.+|-.+|+++++|||.+ .+..+++
T Consensus 199 ---~-~----------~------~-----------~~~~~----~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l 236 (308)
T TIGR02788 199 ---G-Q----------G------L-----------AKVTP----KDLLQSCLRMRPDRIILGELRG-------DEAFDFI 236 (308)
T ss_pred ---C-C----------C------c-----------CccCH----HHHHHHHhcCCCCeEEEeccCC-------HHHHHHH
Confidence 0 0 0 0 00111 2246667888999999999996 2345666
Q ss_pred HHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHh
Q 020527 261 HALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL 307 (325)
Q Consensus 261 ~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~ 307 (325)
+.+.. .+.+++.++|..+.....+|+..|..|++...|.+.+.+
T Consensus 237 ~a~~~---g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 237 RAVNT---GHPGSITTLHAGSPEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHhc---CCCeEEEEEeCCCHHHHHHHHHHHhhccccccCCCHHHH
Confidence 66642 133569999999977779999999999998888888776
No 441
>PRK01156 chromosome segregation protein; Provisional
Probab=99.36 E-value=2.7e-12 Score=136.54 Aligned_cols=78 Identities=28% Similarity=0.441 Sum_probs=67.2
Q ss_pred CCCCChHHHHHHHH------HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCC-eEEEEEecCchHHHhcC
Q 020527 215 DDLLSGGQKQRIAI------ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTK-RTVIVIAHRLSTIKAVD 287 (325)
Q Consensus 215 ~~~LSgGq~QRv~i------Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g-~tvi~vtH~~~~~~~~d 287 (325)
...|||||++|++| ||+++.+|++++|||||++||+.....+.+++....+. ..+ .++|+||||+..+..||
T Consensus 799 ~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~-~~~~~~ii~ish~~~~~~~~d 877 (895)
T PRK01156 799 IDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKD-SSDIPQVIMISHHRELLSVAD 877 (895)
T ss_pred cccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEECchHHHHhcC
Confidence 35799999999975 59999999999999999999999999999998764432 123 48999999999888899
Q ss_pred EEEEEe
Q 020527 288 RIVVID 293 (325)
Q Consensus 288 ~v~~l~ 293 (325)
+++.+.
T Consensus 878 ~ii~~~ 883 (895)
T PRK01156 878 VAYEVK 883 (895)
T ss_pred eEEEEE
Confidence 999997
No 442
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.34 E-value=1.1e-12 Score=116.80 Aligned_cols=65 Identities=25% Similarity=0.380 Sum_probs=52.9
Q ss_pred CCCChHHHHHHHHHHHHcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHH
Q 020527 216 DLLSGGQKQRIAIARAILRDP---AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 283 (325)
Q Consensus 216 ~~LSgGq~QRv~iAral~~~p---~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~ 283 (325)
..+|.|++|.+.|+.++...+ .++++|||-++|.|..++.+.+.|.+..+ .+.-+|++||.+..+
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~---~~~QviitTHSp~il 302 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSK---KNIQVIITTHSPFIL 302 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGG---GSSEEEEEES-GGG-
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCc---cCCEEEEeCccchhc
Confidence 347999999999998887766 89999999999999999999999988764 257899999998764
No 443
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.32 E-value=2.4e-11 Score=105.11 Aligned_cols=75 Identities=13% Similarity=0.169 Sum_probs=61.2
Q ss_pred CCCChHHHH------HHHHHHHHcCCCCEEEEeCCCCCCC---HHHHHHHHHHHHHhhccCCCCeEEEEEecCchH----
Q 020527 216 DLLSGGQKQ------RIAIARAILRDPAILLLDEATSALD---SESEHYVKGVLHALRNDCKTKRTVIVIAHRLST---- 282 (325)
Q Consensus 216 ~~LSgGq~Q------Rv~iAral~~~p~llllDEPts~LD---~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~---- 282 (325)
..+|+|++| +...+.+...+|+++++|||++.+| ......+.+.+..+++ .|.|+|+++|+...
T Consensus 70 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~---~g~tvi~v~~~~~~~~~~ 146 (187)
T cd01124 70 DEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKR---FGVTTLLTSEQSGLEGTG 146 (187)
T ss_pred cccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHH---CCCEEEEEeccccCCCcc
Confidence 468999998 5555555677999999999999999 7778888888888865 48899999998764
Q ss_pred -----HHh-cCEEEEEe
Q 020527 283 -----IKA-VDRIVVID 293 (325)
Q Consensus 283 -----~~~-~d~v~~l~ 293 (325)
+.. ||.|+.|+
T Consensus 147 ~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 147 FGGGDVEYLVDGVIRLR 163 (187)
T ss_pred cCcCceeEeeeEEEEEE
Confidence 444 89999987
No 444
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.31 E-value=1e-12 Score=127.46 Aligned_cols=67 Identities=16% Similarity=0.203 Sum_probs=55.8
Q ss_pred CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCC-eEEECCEeCCCCCHHHHhcceEEEccCC
Q 020527 96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-QIYIDGFPLTDLDIRWLREKIGFVGQEP 165 (325)
Q Consensus 96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G-~I~i~g~~i~~~~~~~~r~~i~~v~Q~~ 165 (325)
.+|++||+++++||+++|+|||||||||||+ +|+.+|++| +|.++|+++...+..++.. .-+|+|+.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~-LR~VFQ~f 87 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMET-LDEIFDGF 87 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHH-HHHHHHhh
Confidence 5899999999999999999999999999999 788888888 7999999997755433211 11888864
No 445
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.28 E-value=6.1e-11 Score=101.32 Aligned_cols=79 Identities=19% Similarity=0.246 Sum_probs=65.8
Q ss_pred CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeC
Q 020527 216 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD 294 (325)
Q Consensus 216 ~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~ 294 (325)
+..|.||-=---+.+.+- ..-++|||||-|+|.|.-+-.++..|+++.+ .|.-+||+||.+=.+.. --.|+.++.
T Consensus 128 h~~SHGEsf~~i~~~rf~-~~GiYiLDEPEa~LSp~RQlella~l~~la~---sGaQ~IiATHSPiLlAiP~A~I~~~~~ 203 (233)
T COG3910 128 HHMSHGESFLAIFHNRFN-GQGIYILDEPEAALSPSRQLELLAILRDLAD---SGAQIIIATHSPILLAIPGAEIYEISE 203 (233)
T ss_pred hhhccchHHHHHHHHHhc-cCceEEecCccccCCHHHHHHHHHHHHHHHh---cCCeEEEEecChhheeCCCcEEEEEec
Confidence 347999987777777765 4589999999999999999999999999975 47899999999877765 688999988
Q ss_pred CEEE
Q 020527 295 GRII 298 (325)
Q Consensus 295 G~i~ 298 (325)
+.+.
T Consensus 204 ~g~~ 207 (233)
T COG3910 204 SGIE 207 (233)
T ss_pred CCcc
Confidence 7653
No 446
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.27 E-value=3.2e-11 Score=126.70 Aligned_cols=69 Identities=20% Similarity=0.355 Sum_probs=59.5
Q ss_pred HcCCCCEEEEeCCCCCC-CHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH----------hcCEEEEEeCCEEEEE
Q 020527 232 ILRDPAILLLDEATSAL-DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK----------AVDRIVVIDDGRIIEV 300 (325)
Q Consensus 232 l~~~p~llllDEPts~L-D~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~----------~~d~v~~l~~G~i~~~ 300 (325)
+..+|+++++|||+.+| |+...+.+.+.++.+++ .|.+++++||+++.+. .|+++++|.+|++...
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK---~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~ 725 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRK---ANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREP 725 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCcccccc
Confidence 35799999999999999 79999999999999875 4779999999998763 5999999999998766
Q ss_pred cCh
Q 020527 301 GNH 303 (325)
Q Consensus 301 g~~ 303 (325)
+..
T Consensus 726 ~~~ 728 (818)
T PRK13830 726 GTR 728 (818)
T ss_pred chH
Confidence 543
No 447
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.27 E-value=1.4e-11 Score=132.47 Aligned_cols=78 Identities=31% Similarity=0.308 Sum_probs=68.7
Q ss_pred CCCCCChHHHHHHHHHHHHcC--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh
Q 020527 214 DDDLLSGGQKQRIAIARAILR--------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA 285 (325)
Q Consensus 214 ~~~~LSgGq~QRv~iAral~~--------~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~ 285 (325)
....|||||+++++||+||+. +|++||+||||++||+.+...+++.|..+++ .|+||++|||......+
T Consensus 946 ~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~---~g~~v~iisH~~~l~~~ 1022 (1047)
T PRK10246 946 DTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNA---SGKTIGVISHVEAMKER 1022 (1047)
T ss_pred CcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH---CCCEEEEEecHHHHHHh
Confidence 346799999999999999995 8999999999999999999999999999974 48999999998777766
Q ss_pred -cCEEEEEeC
Q 020527 286 -VDRIVVIDD 294 (325)
Q Consensus 286 -~d~v~~l~~ 294 (325)
..+|.|-..
T Consensus 1023 i~~qi~V~k~ 1032 (1047)
T PRK10246 1023 IPVQIKVKKI 1032 (1047)
T ss_pred ccceEEEEEC
Confidence 567777654
No 448
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.27 E-value=1.4e-11 Score=119.37 Aligned_cols=167 Identities=17% Similarity=0.167 Sum_probs=114.8
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 159 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~ 159 (325)
++-+.++..|... ..+++++ |.+.+|++++|+|+||+|||||+++|++..+|+.|.|.+.|+.-.
T Consensus 131 ~~r~~i~~~l~TG--iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg~------------ 195 (432)
T PRK06793 131 FEREEITDVFETG--IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGR------------ 195 (432)
T ss_pred hheechhhccCCC--CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCcc------------
Confidence 5667777777542 4688885 999999999999999999999999999999999888877665421
Q ss_pred EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc------
Q 020527 160 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL------ 233 (325)
Q Consensus 160 ~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~------ 233 (325)
+|.|.+..- +...++... --.....+-|.|+|+|++.+.+.+
T Consensus 196 -----------ev~e~~~~~-------------l~~~gl~~t--------vvv~~tsd~s~~~r~ra~~~a~~iAEyfr~ 243 (432)
T PRK06793 196 -----------EVKDFIRKE-------------LGEEGMRKS--------VVVVATSDESHLMQLRAAKLATSIAEYFRD 243 (432)
T ss_pred -----------cHHHHHHHH-------------hhhccccee--------EEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 222222100 000000000 000112457999999999998887
Q ss_pred -CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEc
Q 020527 234 -RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 301 (325)
Q Consensus 234 -~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g 301 (325)
.++-++++|+||...|+. +++-..+.+... .|.+..+.||-...++++.+ .++|.|....
T Consensus 244 ~G~~VLlilDslTr~a~A~--reisl~~~e~p~---~G~~~~~~s~l~~L~ERag~---~~~GSiT~~~ 304 (432)
T PRK06793 244 QGNNVLLMMDSVTRFADAR--RSVDIAVKELPI---GGKTLLMESYMKKLLERSGK---TQKGSITGIY 304 (432)
T ss_pred cCCcEEEEecchHHHHHHH--HHHHHHhcCCCC---CCeeeeeeccchhHHHHhcc---CCCcceEEEE
Confidence 789999999999999996 444445555432 37888888885445566544 3688875543
No 449
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.27 E-value=7.3e-12 Score=136.10 Aligned_cols=74 Identities=27% Similarity=0.433 Sum_probs=65.9
Q ss_pred CCCChHHHHHHHHHHHHc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEE
Q 020527 216 DLLSGGQKQRIAIARAIL----RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVV 291 (325)
Q Consensus 216 ~~LSgGq~QRv~iAral~----~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~ 291 (325)
..|||||+||++||++++ .+|+++||||||++||+.+...+.++|..+.+ +.++|+|||++..+..||+++.
T Consensus 1088 ~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~----~~~~i~~sh~~~~~~~~d~~~~ 1163 (1179)
T TIGR02168 1088 SLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK----NTQFIVITHNKGTMEVADQLYG 1163 (1179)
T ss_pred cccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc----CCEEEEEEcChhHHHHhhhHee
Confidence 579999999999999984 67899999999999999999999999998853 4689999999998878999865
Q ss_pred Ee
Q 020527 292 ID 293 (325)
Q Consensus 292 l~ 293 (325)
+.
T Consensus 1164 ~~ 1165 (1179)
T TIGR02168 1164 VT 1165 (1179)
T ss_pred ee
Confidence 53
No 450
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.23 E-value=7.5e-11 Score=98.73 Aligned_cols=130 Identities=18% Similarity=0.137 Sum_probs=77.8
Q ss_pred EEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 189 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~ 189 (325)
+++|.||||+||||+++.+++...+..|.+.+.+.+... ...+ ++.... ....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~---~~~~------------------~~~~~~-~~~~----- 53 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI---EELT------------------ERLIGE-SLKG----- 53 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch---HHHH------------------HHHhhh-hhcc-----
Confidence 368999999999999999999887766666554432111 1000 000000 0000
Q ss_pred HHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCC----------CCHHHHHHHHHH
Q 020527 190 EWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSA----------LDSESEHYVKGV 259 (325)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~----------LD~~~~~~i~~~ 259 (325)
..+... +. .......+..+.++++.+++...+|+++++|||++- .|....+.+.++
T Consensus 54 --~~~~~~---~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l 119 (165)
T cd01120 54 --ALDNLI---IV---------FATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELREL 119 (165)
T ss_pred --ccccEE---EE---------EcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 000000 00 000122355666788899999999999999999954 444555666666
Q ss_pred HHHhhccCCCCeEEEEEecCchHH
Q 020527 260 LHALRNDCKTKRTVIVIAHRLSTI 283 (325)
Q Consensus 260 l~~l~~~~~~g~tvi~vtH~~~~~ 283 (325)
+...++ .+.|+|+++|.....
T Consensus 120 ~~~~~~---~~~~vv~~~~~~~~~ 140 (165)
T cd01120 120 LERARK---GGVTVIFTLQVPSGD 140 (165)
T ss_pred HHHHhc---CCceEEEEEecCCcc
Confidence 555542 489999999977543
No 451
>PRK02224 chromosome segregation protein; Provisional
Probab=99.16 E-value=7.3e-11 Score=125.44 Aligned_cols=77 Identities=30% Similarity=0.491 Sum_probs=67.2
Q ss_pred CCCChHHHH------HHHHHHHHcCC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCC-eEEEEEecCchH
Q 020527 216 DLLSGGQKQ------RIAIARAILRD-----P-AILLLDEATSALDSESEHYVKGVLHALRNDCKTK-RTVIVIAHRLST 282 (325)
Q Consensus 216 ~~LSgGq~Q------Rv~iAral~~~-----p-~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g-~tvi~vtH~~~~ 282 (325)
..||||||| |+++|++++.+ | +++|+||||++||+.....+.++|..+.. .| .+||+||||.+.
T Consensus 780 ~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~---~~~~qviiish~~~~ 856 (880)
T PRK02224 780 EQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRR---LGVEQIVVVSHDDEL 856 (880)
T ss_pred hhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHh---cCCCeEEEEECChHH
Confidence 579999999 99999999863 2 67999999999999999999999999863 24 479999999999
Q ss_pred HHhcCEEEEEeCC
Q 020527 283 IKAVDRIVVIDDG 295 (325)
Q Consensus 283 ~~~~d~v~~l~~G 295 (325)
+..||+++.|...
T Consensus 857 ~~~ad~~~~~~~~ 869 (880)
T PRK02224 857 VGAADDLVRVEKD 869 (880)
T ss_pred HHhcCeeEEeecC
Confidence 8889999999744
No 452
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.16 E-value=7.4e-11 Score=128.41 Aligned_cols=75 Identities=21% Similarity=0.301 Sum_probs=66.8
Q ss_pred CCCChHHHHHHHHHHHHc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEE
Q 020527 216 DLLSGGQKQRIAIARAIL----RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVV 291 (325)
Q Consensus 216 ~~LSgGq~QRv~iAral~----~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~ 291 (325)
..||||||++++||++++ .+|+++|||||+++||+.+...+.++|.++.+ +.++|+|||+...+..||+++.
T Consensus 1073 ~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~----~~~~i~~t~~~~~~~~~d~~~~ 1148 (1164)
T TIGR02169 1073 EAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG----EAQFIVVSLRSPMIEYADRAIG 1148 (1164)
T ss_pred hhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC----CCeEEEEECcHHHHHhcceeEe
Confidence 469999999999999998 47899999999999999999999999998853 4689999999988888999987
Q ss_pred EeC
Q 020527 292 IDD 294 (325)
Q Consensus 292 l~~ 294 (325)
+..
T Consensus 1149 ~~~ 1151 (1164)
T TIGR02169 1149 VTM 1151 (1164)
T ss_pred EEE
Confidence 753
No 453
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=99.11 E-value=3.8e-10 Score=99.29 Aligned_cols=118 Identities=27% Similarity=0.384 Sum_probs=72.9
Q ss_pred EEEEEcCCCChHHHHHHHHHcCCCCC-CCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHH
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 188 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~~~~-~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~ 188 (325)
.+.|+||+||||||+++.+++.+++. .|.|.....++. +.. ....+++.|.. .+. .
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E-~~~---~~~~~~i~q~~------------vg~--~----- 59 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIE-FVH---ESKRSLINQRE------------VGL--D----- 59 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcc-ccc---cCccceeeecc------------cCC--C-----
Confidence 68899999999999999999888643 567666544431 100 00111221110 000 0
Q ss_pred HHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCC
Q 020527 189 IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCK 268 (325)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~ 268 (325)
. ..++. +++++|..+|+++++|||. |+++...+ ++.. .
T Consensus 60 -----------------~---------~~~~~------~i~~aLr~~pd~ii~gEir---d~e~~~~~---l~~a-~--- 97 (198)
T cd01131 60 -----------------T---------LSFEN------ALKAALRQDPDVILVGEMR---DLETIRLA---LTAA-E--- 97 (198)
T ss_pred -----------------c---------cCHHH------HHHHHhcCCcCEEEEcCCC---CHHHHHHH---HHHH-H---
Confidence 0 01111 4889999999999999996 66554333 3322 2
Q ss_pred CCeEEEEEecCchHHHhcCEEEEE
Q 020527 269 TKRTVIVIAHRLSTIKAVDRIVVI 292 (325)
Q Consensus 269 ~g~tvi~vtH~~~~~~~~d~v~~l 292 (325)
.|..++.++|..+....+||++.|
T Consensus 98 ~G~~v~~t~Ha~~~~~~~~Rl~~l 121 (198)
T cd01131 98 TGHLVMSTLHTNSAAKTIDRIIDV 121 (198)
T ss_pred cCCEEEEEecCCcHHHHHhHHHhh
Confidence 478899999998766556666554
No 454
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=99.10 E-value=4.8e-10 Score=101.03 Aligned_cols=73 Identities=11% Similarity=0.166 Sum_probs=53.0
Q ss_pred CChHHHHHHHHHHHHcC--CCCEEEEeCCCCCCC---HHHHHHHHHHHHHhhccCCCCeEEEEEecCchH-------HHh
Q 020527 218 LSGGQKQRIAIARAILR--DPAILLLDEATSALD---SESEHYVKGVLHALRNDCKTKRTVIVIAHRLST-------IKA 285 (325)
Q Consensus 218 LSgGq~QRv~iAral~~--~p~llllDEPts~LD---~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~-------~~~ 285 (325)
.|.++.+.+..++.++. +|+++++||||+.+| ......+++.++.+++ ++.|+++++|+... +..
T Consensus 101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~---~g~tvllt~~~~~~~~~~~~~~~~ 177 (234)
T PRK06067 101 NSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVD---LGKTILITLHPYAFSEELLSRIRS 177 (234)
T ss_pred CcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHh---CCCEEEEEecCCcCCHHHHHHHHh
Confidence 57788999999999987 999999999996544 4444444444555443 47899999997653 333
Q ss_pred -cCEEEEEe
Q 020527 286 -VDRIVVID 293 (325)
Q Consensus 286 -~d~v~~l~ 293 (325)
+|-++.|+
T Consensus 178 l~DgvI~L~ 186 (234)
T PRK06067 178 ICDVYLKLR 186 (234)
T ss_pred heEEEEEEE
Confidence 67777776
No 455
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=99.03 E-value=4.3e-10 Score=109.36 Aligned_cols=85 Identities=18% Similarity=0.206 Sum_probs=69.7
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECC---EeCCCCCHH---
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG---FPLTDLDIR--- 152 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g---~~i~~~~~~--- 152 (325)
.++.+++++.|... ..+++.++ .|.+||+++|+||||||||||+++|+++.+|+.|.|.+.| .++..+...
T Consensus 139 ~~~r~~v~~~l~TG--i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~ 215 (450)
T PRK06002 139 AMTRARVETGLRTG--VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLA 215 (450)
T ss_pred CeEeecceEEcCCC--cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHHH
Confidence 48999999999643 57999996 9999999999999999999999999999999999998864 555443322
Q ss_pred -HHhcceEEEccCCc
Q 020527 153 -WLREKIGFVGQEPQ 166 (325)
Q Consensus 153 -~~r~~i~~v~Q~~~ 166 (325)
.+++.|+|++|...
T Consensus 216 ~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 216 DNLKKAVAVVATSDE 230 (450)
T ss_pred HhhCCeEEEEEcCCC
Confidence 23467999999753
No 456
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.01 E-value=1.9e-08 Score=80.94 Aligned_cols=119 Identities=35% Similarity=0.437 Sum_probs=78.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCCCCCC-CeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCC
Q 020527 107 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVK 185 (325)
Q Consensus 107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~-G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~ 185 (325)
++..+.|+||+|+||||+++.++..+.... +-+.++.............
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------------------------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------------------------------
Confidence 367899999999999999999999887654 4555554433221111100
Q ss_pred HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHH-----H
Q 020527 186 NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV-----L 260 (325)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~-----l 260 (325)
....... ....++++..+..+++|-..+|.++++||+..-.+.......... .
T Consensus 51 -------------~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~ 108 (148)
T smart00382 51 -------------LIIVGGK---------KASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLL 108 (148)
T ss_pred -------------hhhhhcc---------CCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHH
Confidence 0000000 023678888888899888888999999999999999877655431 1
Q ss_pred HHhhccCCCCeEEEEEecC
Q 020527 261 HALRNDCKTKRTVIVIAHR 279 (325)
Q Consensus 261 ~~l~~~~~~g~tvi~vtH~ 279 (325)
..... ..+..+|.++|.
T Consensus 109 ~~~~~--~~~~~~i~~~~~ 125 (148)
T smart00382 109 LLLKS--EKNLTVILTTND 125 (148)
T ss_pred HHHHh--cCCCEEEEEeCC
Confidence 22211 246788888884
No 457
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.99 E-value=4.1e-11 Score=119.15 Aligned_cols=157 Identities=11% Similarity=0.152 Sum_probs=98.4
Q ss_pred EeeCCcEEEEEcCCCChHHHHHHHH--HcCCCCCCCeEEECCEeCCCCCHHHH---hcceEEEccCCcCccccHHHHHhc
Q 020527 104 TIEANEVVAIVGLSGSGKSTFVNLL--LRLYEPSDGQIYIDGFPLTDLDIRWL---REKIGFVGQEPQLLQMDIKSNIMY 178 (325)
Q Consensus 104 ~i~~Ge~~~iiG~nGsGKSTLl~~l--~gl~~~~~G~I~i~g~~i~~~~~~~~---r~~i~~v~Q~~~l~~~tv~enl~~ 178 (325)
-+++|..+.|.||+|||||||..-+ .|..++.+.-+++.... ++.++ .+.+||-+++..- . +++.+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE----~~~~l~~~~~~~G~~~~~~~~-~----g~l~~ 87 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE----SPQDIIKNARSFGWDLQKLVD-E----GKLFI 87 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec----CHHHHHHHHHHcCCCHHHHhh-c----CceEE
Confidence 3789999999999999999999765 46665556667776532 23332 3456766654310 0 00110
Q ss_pred CCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH--HHHcCCCCEEEEeCCCCCCCHHHHHHH
Q 020527 179 GCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA--RAILRDPAILLLDEATSALDSESEHYV 256 (325)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA--ral~~~p~llllDEPts~LD~~~~~~i 256 (325)
-... .........+..++.+++++.. ..+|+|++|||.|+ .++...|+.. ...++.+
T Consensus 88 ~~~~--~~~~~~~~~~~~~l~~~l~~i~---------~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l 146 (484)
T TIGR02655 88 LDAS--PDPEGQDVVGGFDLSALIERIN---------YAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREI 146 (484)
T ss_pred EecC--chhccccccccCCHHHHHHHHH---------HHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHH
Confidence 0000 0000011223334445554443 35899999999999 6666665543 4677788
Q ss_pred HHHHHHhhccCCCCeEEEEEecCchH--------H-Hh-cCEEEEEe
Q 020527 257 KGVLHALRNDCKTKRTVIVIAHRLST--------I-KA-VDRIVVID 293 (325)
Q Consensus 257 ~~~l~~l~~~~~~g~tvi~vtH~~~~--------~-~~-~d~v~~l~ 293 (325)
.++++.+++ .|+|+|+++|+.+. + +. ||.|+.|+
T Consensus 147 ~~Li~~L~~---~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 147 FRLVARLKQ---IGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHHHHHHH---CCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 888888864 48999999998764 2 43 89999887
No 458
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.93 E-value=7.7e-10 Score=107.48 Aligned_cols=82 Identities=18% Similarity=0.181 Sum_probs=63.1
Q ss_pred CCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCC---eEEECCEeCCCCCHHH------HhcceEEEccCC
Q 020527 95 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG---QIYIDGFPLTDLDIRW------LREKIGFVGQEP 165 (325)
Q Consensus 95 ~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G---~I~i~g~~i~~~~~~~------~r~~i~~v~Q~~ 165 (325)
..+++++ |++.+|++++|+|+||||||||+++|+|+.+++.+ .|-.++.++.++.... .|..+++++|+.
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~ 221 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE 221 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence 4699999 99999999999999999999999999999998864 3333444443322121 245699999998
Q ss_pred cCc-cccHHHHHh
Q 020527 166 QLL-QMDIKSNIM 177 (325)
Q Consensus 166 ~l~-~~tv~enl~ 177 (325)
..+ ..++.+++.
T Consensus 222 s~~~rl~a~e~a~ 234 (434)
T PRK07196 222 SPLMRIKATELCH 234 (434)
T ss_pred ChhhhHHHHHHHH
Confidence 776 678888864
No 459
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.92 E-value=9.9e-09 Score=100.37 Aligned_cols=177 Identities=21% Similarity=0.216 Sum_probs=106.5
Q ss_pred CCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCH---H-----HHhcceEEEccCCc
Q 020527 95 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI---R-----WLREKIGFVGQEPQ 166 (325)
Q Consensus 95 ~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~---~-----~~r~~i~~v~Q~~~ 166 (325)
..+++++ |.+.+|++++|+|+||+|||||+++|+++.+++.|.+...|..-.+... . .+++.+-++.+...
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d~ 229 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQ 229 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCCC
Confidence 4699999 9999999999999999999999999999999998887776654333210 0 01122222222110
Q ss_pred CccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCCh-HHHHHHHHHHHHcCCCCEEEEeCC-
Q 020527 167 LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSG-GQKQRIAIARAILRDPAILLLDEA- 244 (325)
Q Consensus 167 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSg-Gq~QRv~iAral~~~p~llllDEP- 244 (325)
+. ..+...+.-...+.+.... .|.+..+-..+|+- -|-+| .++ +.+.||
T Consensus 230 ----~p-------------~~r~~~~~~a~t~AE~frd--~G~~Vll~~DslTr~A~A~R-Eis---------l~~ge~P 280 (440)
T TIGR01026 230 ----SP-------------LLRLKGAYVATAIAEYFRD--QGKDVLLLMDSVTRFAMAQR-EIG---------LAAGEPP 280 (440)
T ss_pred ----CH-------------HHHHHHHHHHHHHHHHHHH--CCCCEEEEEeChHHHHHHHH-HHH---------HhcCCCC
Confidence 00 1111111111112222221 13322222233432 22233 222 123443
Q ss_pred -CCCCCHHHHHHHHHHHHHhhccCCCCe-------EEEEEecCchHHHhcCEEEEEeCCEEEEEcChHH
Q 020527 245 -TSALDSESEHYVKGVLHALRNDCKTKR-------TVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAE 305 (325)
Q Consensus 245 -ts~LD~~~~~~i~~~l~~l~~~~~~g~-------tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~ 305 (325)
+.|+||.....+.+++++... .+. ||++.+||+. -..+|++..+.+|+|+.+....+
T Consensus 281 ~~~Gypp~~~~~l~~l~ERag~---~~~GSIT~i~tVl~~~~d~~-dpi~d~~~~i~dG~ivLsr~la~ 345 (440)
T TIGR01026 281 ATKGYTPSVFSTLPRLLERAGA---SGKGSITAFYTVLVEGDDMN-EPIADSVRGILDGHIVLSRALAQ 345 (440)
T ss_pred cccccChhHHHHHHHHHHHhcc---CCCCeeeEEEEEEccCcCCC-cchhhhhccccceEEEEecchhh
Confidence 569999999999999988863 356 8888999983 12489999999999998766543
No 460
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.91 E-value=3.1e-09 Score=96.13 Aligned_cols=46 Identities=15% Similarity=0.288 Sum_probs=38.7
Q ss_pred HcCCCCEEEEeCCCCC------CCHHHHHHHHHHHHHhhccCCCCeEEEEEecCc
Q 020527 232 ILRDPAILLLDEATSA------LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL 280 (325)
Q Consensus 232 l~~~p~llllDEPts~------LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~ 280 (325)
...+|+++++| |+++ +|+.....+++.|.+++++ .|.|+++++|..
T Consensus 108 ~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~--~g~avl~v~H~~ 159 (239)
T cd01125 108 LIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQ--TGAAILLVHHVR 159 (239)
T ss_pred HhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHH--hCCEEEEEeccC
Confidence 35799999999 7764 6999888899999888764 588999999976
No 461
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.89 E-value=2.5e-09 Score=102.61 Aligned_cols=61 Identities=31% Similarity=0.448 Sum_probs=55.1
Q ss_pred CCChHHHHHHHHHHHHcC---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHH
Q 020527 217 LLSGGQKQRIAIARAILR---------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 283 (325)
Q Consensus 217 ~LSgGq~QRv~iAral~~---------~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~ 283 (325)
.+|.||+|+++||.+|+. +|+|+|||||+++||+..+..+.+.+.+. |.+++++||+++.+
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~------~~qv~it~~~~~~~ 344 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL------GVQVFVTAISLDHL 344 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc------CCEEEEEecChhhc
Confidence 499999999999999999 99999999999999999999998888643 45899999998764
No 462
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.89 E-value=3.8e-09 Score=104.02 Aligned_cols=63 Identities=17% Similarity=0.282 Sum_probs=51.1
Q ss_pred ceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHH
Q 020527 97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI 176 (325)
Q Consensus 97 iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl 176 (325)
++++.++.+++|++++++||||+||||++..|++.+.+..|. ++|+++++|+ |..++.|++
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~-----------------~kV~LI~~Dt--~RigA~EQL 305 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA-----------------SKVALLTTDS--YRIGGHEQL 305 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC-----------------CeEEEEeCCc--cchhHHHHH
Confidence 456677778889999999999999999999999987666653 2578898887 567788888
Q ss_pred hc
Q 020527 177 MY 178 (325)
Q Consensus 177 ~~ 178 (325)
.+
T Consensus 306 r~ 307 (484)
T PRK06995 306 RI 307 (484)
T ss_pred HH
Confidence 54
No 463
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.85 E-value=2.8e-09 Score=92.81 Aligned_cols=79 Identities=23% Similarity=0.295 Sum_probs=58.1
Q ss_pred ceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCc--Cc-cccHH
Q 020527 97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQ--LL-QMDIK 173 (325)
Q Consensus 97 iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~--l~-~~tv~ 173 (325)
..+-+.+.+++|+.++|+||||||||||+++|+|+++|+.|.|.+.+..- +... .+..+++++|... .+ ..+..
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E--~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 90 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAE--LQLP-HPNWVRLVTRPGNVEGSGEVTMA 90 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccc--cCCC-CCCEEEEEEecCCCCCCCccCHH
Confidence 45556677899999999999999999999999999999999999977432 2111 1345677766543 23 35777
Q ss_pred HHHhc
Q 020527 174 SNIMY 178 (325)
Q Consensus 174 enl~~ 178 (325)
+.+..
T Consensus 91 ~~l~~ 95 (186)
T cd01130 91 DLLRS 95 (186)
T ss_pred HHHHH
Confidence 77643
No 464
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.84 E-value=9.2e-09 Score=98.54 Aligned_cols=81 Identities=20% Similarity=0.230 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhHhcCCCCccccccccccCCcccEEEEEEEEECCCCCCCCcee-----------eeeEEeeCCcEEEEEc
Q 020527 47 SIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILN-----------HVCLTIEANEVVAIVG 115 (325)
Q Consensus 47 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~iL~-----------~isl~i~~Ge~~~iiG 115 (325)
+..+.+|++++++.++....++ ....+.+.++||++.|++. +.+|+ |+++.|.+|+.++|+|
T Consensus 103 ~~~~~ER~~~Ll~v~~vn~~~~-----e~~~~ri~Fe~LTf~YP~e--r~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG 175 (415)
T TIGR00767 103 SPKEGERYFALLKVESVNGDDP-----EKAKNRVLFENLTPLYPNE--RLRLETSTEDLSTRVLDLFAPIGKGQRGLIVA 175 (415)
T ss_pred ccccHhHHHHHhCCCccCCCCc-----cccCCCeEEEEeeecCCCc--cceeecCccccceeeeeeEEEeCCCCEEEEEC
Confidence 4456799999999876532211 1123469999999999864 36897 9999999999999999
Q ss_pred CCCChHHHHHHHHHcCCCC
Q 020527 116 LSGSGKSTFVNLLLRLYEP 134 (325)
Q Consensus 116 ~nGsGKSTLl~~l~gl~~~ 134 (325)
|+|||||||++.|+..+..
T Consensus 176 ~~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 176 PPKAGKTVLLQKIAQAITR 194 (415)
T ss_pred CCCCChhHHHHHHHHhhcc
Confidence 9999999999999998753
No 465
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.82 E-value=1.1e-07 Score=100.52 Aligned_cols=136 Identities=21% Similarity=0.216 Sum_probs=83.7
Q ss_pred CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCC-CCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHH
Q 020527 96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY-EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 174 (325)
Q Consensus 96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~-~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~e 174 (325)
.+-+|+++. +.+.++.|.|||.+||||+||.++-.. -..-|. |||-.. ...++.|
T Consensus 596 ~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G~---------------------~VPa~~--a~i~~~d 651 (854)
T PRK05399 596 FVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQIGS---------------------FVPAES--ARIGIVD 651 (854)
T ss_pred eEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcCC---------------------ceeccc--eEecccC
Confidence 466788887 667899999999999999999986432 112221 222111 0111111
Q ss_pred HHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC--CCCEEEEeCC---CCCCC
Q 020527 175 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR--DPAILLLDEA---TSALD 249 (325)
Q Consensus 175 nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~--~p~llllDEP---ts~LD 249 (325)
.|.. + .+..+ .+. ..+|--+.....++++|-. ++.++|+||| |+.+|
T Consensus 652 ~I~t----r------------iga~d---~i~---------~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~d 703 (854)
T PRK05399 652 RIFT----R------------IGASD---DLA---------SGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYD 703 (854)
T ss_pred eeee----c------------cCccc---ccc---------cCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcch
Confidence 1110 0 00000 000 2367777777778877755 8999999999 99999
Q ss_pred HHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcC
Q 020527 250 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVD 287 (325)
Q Consensus 250 ~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d 287 (325)
..+ ....+++.+.+. .+.+++++||+.+....++
T Consensus 704 g~a--ia~aile~l~~~--~~~~~l~aTH~~el~~l~~ 737 (854)
T PRK05399 704 GLS--IAWAVAEYLHDK--IGAKTLFATHYHELTELEE 737 (854)
T ss_pred hHH--HHHHHHHHHHhc--CCceEEEEechHHHHHHhh
Confidence 554 345566666542 2578999999966654444
No 466
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.79 E-value=1.8e-08 Score=107.53 Aligned_cols=79 Identities=24% Similarity=0.324 Sum_probs=68.8
Q ss_pred CCCCCChHHHHHHHHHHHHc------CC--CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh
Q 020527 214 DDDLLSGGQKQRIAIARAIL------RD--PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA 285 (325)
Q Consensus 214 ~~~~LSgGq~QRv~iAral~------~~--p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~ 285 (325)
+...|||||+=.++||-+|+ .+ -++++|||||..||+.+...+.++|..+.. .+.+|+||||+.++...
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~---~~~qiiIISH~eel~e~ 888 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLS---DGRQIIIISHVEELKER 888 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHh---cCCeEEEEeChHHHHHh
Confidence 34679999999888877764 45 699999999999999999999999999975 37899999999999999
Q ss_pred cCEEEEEeCC
Q 020527 286 VDRIVVIDDG 295 (325)
Q Consensus 286 ~d~v~~l~~G 295 (325)
+|+++.++..
T Consensus 889 ~~~~i~V~k~ 898 (908)
T COG0419 889 ADVRIRVKKD 898 (908)
T ss_pred CCeEEEEEec
Confidence 9999888753
No 467
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.78 E-value=2.9e-07 Score=97.52 Aligned_cols=54 Identities=30% Similarity=0.411 Sum_probs=48.4
Q ss_pred HHHHHcCCCCEEEEeCCCCCC-CHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH
Q 020527 228 IARAILRDPAILLLDEATSAL-DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK 284 (325)
Q Consensus 228 iAral~~~p~llllDEPts~L-D~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~ 284 (325)
|+|++..+|+++++|||+.+| |+..++.+.+.++.+++ .|.+++++||+++.+.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK---~g~~vil~TQs~~d~~ 734 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRK---ANCLVLMATQSLSDAA 734 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHh
Confidence 678889999999999999999 79999999999999875 4779999999998764
No 468
>PRK14079 recF recombination protein F; Provisional
Probab=98.78 E-value=1.3e-08 Score=97.25 Aligned_cols=75 Identities=17% Similarity=0.276 Sum_probs=60.0
Q ss_pred CChHHHHHHHHHHHHc---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCE
Q 020527 218 LSGGQKQRIAIARAIL---------RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDR 288 (325)
Q Consensus 218 LSgGq~QRv~iAral~---------~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~ 288 (325)
+|+||++++++|+.|+ .+|+++|||||+++||+..+..+.+.+.... .++|-.| +....||+
T Consensus 264 ~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~------q~~it~t---~~~~~~~~ 334 (349)
T PRK14079 264 ASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP------QAIVAGT---EAPPGAAL 334 (349)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC------cEEEEcC---CCCCCCce
Confidence 8999999999999998 8999999999999999999999888875431 1333322 23345999
Q ss_pred EEEEeCCEEEEEc
Q 020527 289 IVVIDDGRIIEVG 301 (325)
Q Consensus 289 v~~l~~G~i~~~g 301 (325)
++.+++|++....
T Consensus 335 ~~~~~~~~~~~~~ 347 (349)
T PRK14079 335 TLRIEAGVFTPEA 347 (349)
T ss_pred EEEEeccEecCCC
Confidence 9999999875443
No 469
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.75 E-value=8.9e-09 Score=90.29 Aligned_cols=109 Identities=15% Similarity=0.207 Sum_probs=59.3
Q ss_pred EEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHH-----hcCCCCCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI-----MYGCPKDV 184 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl-----~~~~~~~~ 184 (325)
+++|+||||||||||.++|.+++ ..|.+.+-+.+ ......+..+.. .+..+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D-------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQD-------------------SYYKDLSHEELEERKNNNYDHPDAF 59 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEec-------------------ccccccccccHHHhccCCCCCCCcc
Confidence 48999999999999999999988 33444443332 111111111110 11111111
Q ss_pred CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH
Q 020527 185 KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 251 (325)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~ 251 (325)
..+... +.+..+..+........+.|.|++++..+ .+.+|+++|+|.|+...++.
T Consensus 60 ~~~~~~---------~~l~~l~~~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~ 114 (198)
T cd02023 60 DFDLLI---------SHLQDLKNGKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDKE 114 (198)
T ss_pred cHHHHH---------HHHHHHHCCCCEeccccccccCcccCCce---ecCCCCEEEEechhhccchh
Confidence 111111 11221111222222234678888776555 57889999999999999863
No 470
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.72 E-value=1.4e-08 Score=88.22 Aligned_cols=55 Identities=22% Similarity=0.247 Sum_probs=45.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCC
Q 020527 108 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEP 165 (325)
Q Consensus 108 Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~ 165 (325)
|++++|+||||||||||+++|++...| .+.+.+..+........+..+++++|++
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQEF 56 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHHH
Confidence 789999999999999999999998876 5888888776544444556788888875
No 471
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.72 E-value=2.1e-08 Score=110.47 Aligned_cols=60 Identities=28% Similarity=0.402 Sum_probs=53.0
Q ss_pred CCCChHHHHHHH----HHHH--------HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCch
Q 020527 216 DLLSGGQKQRIA----IARA--------ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS 281 (325)
Q Consensus 216 ~~LSgGq~QRv~----iAra--------l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~ 281 (325)
..||||||||++ +|++ +..+|++++|||||++||+.+...+++++.++ +.++||+||++-
T Consensus 1246 ~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l------~~~~i~~s~~~W 1317 (1353)
T TIGR02680 1246 GPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL------DLDFVMTSEREW 1317 (1353)
T ss_pred cCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh------CCCEEEEccchh
Confidence 579999999996 5755 55899999999999999999999999999887 568999999864
No 472
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.71 E-value=1.3e-08 Score=87.84 Aligned_cols=66 Identities=26% Similarity=0.360 Sum_probs=47.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHh-cceEEEccCCcCc-cccHHHHHhc
Q 020527 107 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR-EKIGFVGQEPQLL-QMDIKSNIMY 178 (325)
Q Consensus 107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r-~~i~~v~Q~~~l~-~~tv~enl~~ 178 (325)
+||+++|+|+||||||||+++|++++.+ +.++|.++... ...+ ...++.+|+...+ ..++.+|+.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~--~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPA--KNIDKMSQGIPLTDEDRLPWLERLNDASY 69 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCH--hHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence 5999999999999999999999999877 68899887432 2222 2356666665433 4556555544
No 473
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.70 E-value=6.9e-08 Score=92.02 Aligned_cols=114 Identities=25% Similarity=0.328 Sum_probs=70.7
Q ss_pred eeCCcEEEEEcCCCChHHHHHHHHHcCCC-CCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCC
Q 020527 105 IEANEVVAIVGLSGSGKSTFVNLLLRLYE-PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD 183 (325)
Q Consensus 105 i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~-~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~ 183 (325)
..++..+.|.||+||||||+++.+.+.++ +..|.|.....++.-. ......++.|.. .+
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~----~~~~~~~i~q~e------------vg---- 178 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV----HRNKRSLINQRE------------VG---- 178 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh----ccCccceEEccc------------cC----
Confidence 35688999999999999999999998765 4467776654332110 000011111100 00
Q ss_pred CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q 020527 184 VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 263 (325)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l 263 (325)
. ...+ -.-++++||-++|+++++||+. |+++....++. .
T Consensus 179 -------------------------~------~~~~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~a---a 217 (343)
T TIGR01420 179 -------------------------L------DTLS----FANALRAALREDPDVILIGEMR---DLETVELALTA---A 217 (343)
T ss_pred -------------------------C------CCcC----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHHH---H
Confidence 0 0001 1224677888999999999997 88876543332 2
Q ss_pred hccCCCCeEEEEEecCchHH
Q 020527 264 RNDCKTKRTVIVIAHRLSTI 283 (325)
Q Consensus 264 ~~~~~~g~tvi~vtH~~~~~ 283 (325)
..|.+++.+.|..+..
T Consensus 218 ----~tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 218 ----ETGHLVFGTLHTNSAA 233 (343)
T ss_pred ----HcCCcEEEEEcCCCHH
Confidence 2488999999986543
No 474
>PRK08149 ATP synthase SpaL; Validated
Probab=98.69 E-value=1.9e-08 Score=97.72 Aligned_cols=70 Identities=26% Similarity=0.316 Sum_probs=58.8
Q ss_pred CCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCC---CeEEECCEeCCCCCHHHH----hcceEEEccCC
Q 020527 95 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD---GQIYIDGFPLTDLDIRWL----REKIGFVGQEP 165 (325)
Q Consensus 95 ~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~---G~I~i~g~~i~~~~~~~~----r~~i~~v~Q~~ 165 (325)
..+++++ +++.+||+++|+|+||+|||||+++|+++..++. |.|-.+|.++..+....+ ++++++|+...
T Consensus 139 i~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 139 VRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred cEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 4699999 9999999999999999999999999999999887 889999988865543332 35688887654
No 475
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.67 E-value=7.5e-09 Score=91.09 Aligned_cols=65 Identities=26% Similarity=0.347 Sum_probs=48.3
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHcCCC------------CCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHH
Q 020527 106 EANEVVAIVGLSGSGKSTFVNLLLRLYE------------PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIK 173 (325)
Q Consensus 106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~------------~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~ 173 (325)
++|++++|+||||||||||+++|++.++ |..|+ ++|.++...+...+++. +.++..++..++.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 77 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDYFFVSKEEFEEM---IENGEFLEWAEVF 77 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCeeEEcCHHHHHHH---HHcCCcEEEEEEC
Confidence 5899999999999999999999999985 77788 57877665565555443 2344444456666
Q ss_pred HH
Q 020527 174 SN 175 (325)
Q Consensus 174 en 175 (325)
+|
T Consensus 78 ~~ 79 (205)
T PRK00300 78 GN 79 (205)
T ss_pred Cc
Confidence 65
No 476
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.65 E-value=1.1e-08 Score=91.81 Aligned_cols=61 Identities=21% Similarity=0.259 Sum_probs=39.2
Q ss_pred EeeCCcEEEEEcCCCChHHHHHHHHH-cCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCC
Q 020527 104 TIEANEVVAIVGLSGSGKSTFVNLLL-RLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEP 165 (325)
Q Consensus 104 ~i~~Ge~~~iiG~nGsGKSTLl~~l~-gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~ 165 (325)
-+++|+.++|.||+|||||||...++ ....+..+-+++......+ ......+.+++.+|+.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~~~-~i~~~~~~~g~~~~~~ 77 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEESRE-SIIRQAAQFGMDFEKA 77 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCCHH-HHHHHHHHhCCCHHHH
Confidence 48899999999999999999987654 2334455567776532110 1111234567766654
No 477
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.64 E-value=9.9e-08 Score=104.28 Aligned_cols=44 Identities=30% Similarity=0.391 Sum_probs=36.7
Q ss_pred eeeEEeeCCcEEEEEcCCCChHHHHHHHHHcC-CCCCCCeEEECC
Q 020527 100 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL-YEPSDGQIYIDG 143 (325)
Q Consensus 100 ~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl-~~~~~G~I~i~g 143 (325)
-+++..+++++++|+|++|+|||||++.+.+- ....+|.+++++
T Consensus 199 lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~ 243 (1153)
T PLN03210 199 LLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDR 243 (1153)
T ss_pred HHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeec
Confidence 34677888999999999999999999999544 455689998876
No 478
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.63 E-value=1.4e-07 Score=96.34 Aligned_cols=110 Identities=25% Similarity=0.261 Sum_probs=64.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCCCCCCC--------eEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhc
Q 020527 107 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG--------QIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMY 178 (325)
Q Consensus 107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G--------~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~ 178 (325)
..+.++|+||||+|||||++++.++.++..| -+.+++..+. ++...+ .|-.+
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~-~d~~~i-------------------~~~ll 233 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR-WDPREV-------------------TNPLL 233 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc-CCHHHH-------------------hHHhc
Confidence 3567999999999999999999998865444 4777765542 222111 11112
Q ss_pred CCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHH
Q 020527 179 GCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG 258 (325)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~ 258 (325)
+.............+...++.+....+ ...+||| +|++|| +..||+..+..+++
T Consensus 234 g~~~~~~~~~a~~~l~~~gl~~~~~g~---------v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~ 287 (615)
T TIGR02903 234 GSVHDPIYQGARRDLAETGVPEPKTGL---------VTDAHGG----------------VLFIDE-IGELDPLLQNKLLK 287 (615)
T ss_pred CCccHHHHHHHHHHHHHcCCCchhcCc---------hhhcCCC----------------eEEEec-cccCCHHHHHHHHH
Confidence 210000000111122222222111111 1357888 999999 79999999999999
Q ss_pred HHHH
Q 020527 259 VLHA 262 (325)
Q Consensus 259 ~l~~ 262 (325)
.+++
T Consensus 288 ~Le~ 291 (615)
T TIGR02903 288 VLED 291 (615)
T ss_pred HHhh
Confidence 8875
No 479
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.60 E-value=1e-07 Score=91.25 Aligned_cols=72 Identities=19% Similarity=0.258 Sum_probs=50.7
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHcCCCC--CCC-eEEECCEeCCCCCHHHHhcceEEEccCCc-----CccccHHHHHh
Q 020527 106 EANEVVAIVGLSGSGKSTFVNLLLRLYEP--SDG-QIYIDGFPLTDLDIRWLREKIGFVGQEPQ-----LLQMDIKSNIM 177 (325)
Q Consensus 106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~--~~G-~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~-----l~~~tv~enl~ 177 (325)
++|..++|+||+||||||++++|++.+.+ ..+ .|.....++ ++....++...++++|... -|...+++.+.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi-E~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR 210 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI-EFVYDEIETISASVCQSEIPRHLNNFAAGVRNALR 210 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc-eEeccccccccceeeeeeccccccCHHHHHHHHhc
Confidence 47899999999999999999999999843 334 565554444 3544444555678888642 24567777765
Q ss_pred c
Q 020527 178 Y 178 (325)
Q Consensus 178 ~ 178 (325)
.
T Consensus 211 ~ 211 (358)
T TIGR02524 211 R 211 (358)
T ss_pred c
Confidence 4
No 480
>PRK01889 GTPase RsgA; Reviewed
Probab=98.59 E-value=6.5e-08 Score=92.58 Aligned_cols=80 Identities=21% Similarity=0.167 Sum_probs=64.6
Q ss_pred ceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHH
Q 020527 97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI 176 (325)
Q Consensus 97 iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl 176 (325)
-++.+.-.+++|++++|+|+||+|||||++.|+|..++..|+|.+++..-.. ...++++.+++|+..+++.+...++
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~---tt~~~~l~~l~~~~~l~DtpG~~~~ 260 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH---TTTHRELHPLPSGGLLIDTPGMREL 260 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc---hhhhccEEEecCCCeecCCCchhhh
Confidence 4566666788999999999999999999999999999999999998754322 1235679999999888876667776
Q ss_pred hcC
Q 020527 177 MYG 179 (325)
Q Consensus 177 ~~~ 179 (325)
.+.
T Consensus 261 ~l~ 263 (356)
T PRK01889 261 QLW 263 (356)
T ss_pred ccc
Confidence 653
No 481
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.54 E-value=4.5e-08 Score=86.57 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=27.1
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHcCCCC
Q 020527 106 EANEVVAIVGLSGSGKSTFVNLLLRLYEP 134 (325)
Q Consensus 106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~ 134 (325)
++|++++|+||||||||||++.|++++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 57999999999999999999999999875
No 482
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.50 E-value=2.7e-07 Score=79.47 Aligned_cols=60 Identities=18% Similarity=0.210 Sum_probs=42.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEE-----------CCEeCCCCCHHHH-----hcceEEEccCCcCc
Q 020527 108 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI-----------DGFPLTDLDIRWL-----REKIGFVGQEPQLL 168 (325)
Q Consensus 108 Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i-----------~g~~i~~~~~~~~-----r~~i~~v~Q~~~l~ 168 (325)
|++++|+||||||||||++.|++.+.+. |.+.+ +|.+....+...+ .+.++.++|.+.++
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLS 76 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCcc
Confidence 6789999999999999999999987654 65555 4444433333322 23477778876554
No 483
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.49 E-value=7.1e-06 Score=86.64 Aligned_cols=49 Identities=24% Similarity=0.350 Sum_probs=42.9
Q ss_pred HHcCCCCEEEEeCCCCCCC-HHHHHHHHHHHHHhhccCCCCeEEEEEecCchH
Q 020527 231 AILRDPAILLLDEATSALD-SESEHYVKGVLHALRNDCKTKRTVIVIAHRLST 282 (325)
Q Consensus 231 al~~~p~llllDEPts~LD-~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~ 282 (325)
.+..+|.++++|||...|| +...+.+.+.++.+++ .|..++++||+++.
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK---~~~~~i~~TQ~~~d 687 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRK---LNTFVIFATQSVED 687 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHH
Confidence 4567899999999999999 8888899999999875 47799999999865
No 484
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.46 E-value=1.3e-07 Score=93.94 Aligned_cols=63 Identities=11% Similarity=0.120 Sum_probs=56.8
Q ss_pred EEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCC
Q 020527 82 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT 147 (325)
Q Consensus 82 ~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~ 147 (325)
+.|+++.|+.. .+++++++.+..|+.++|+||||||||||++.|.|+++|.+|++.++...+.
T Consensus 187 ~~d~~~v~Gq~---~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~ 249 (506)
T PRK09862 187 QHDLSDVIGQE---QGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAIL 249 (506)
T ss_pred ccCeEEEECcH---HHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhh
Confidence 45888888653 5999999999999999999999999999999999999999999999887764
No 485
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.46 E-value=1.1e-07 Score=67.32 Aligned_cols=39 Identities=23% Similarity=0.422 Sum_probs=30.9
Q ss_pred eeeeeEEeeC-CcEEEEEcCCCChHHHHHHHHHcCCCCCC
Q 020527 98 LNHVCLTIEA-NEVVAIVGLSGSGKSTFVNLLLRLYEPSD 136 (325)
Q Consensus 98 L~~isl~i~~-Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~ 136 (325)
+++-++++.+ |+++.|.||||||||||+.++.=++-+..
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 4456677775 57999999999999999999886665543
No 486
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.45 E-value=1.3e-07 Score=92.09 Aligned_cols=64 Identities=19% Similarity=0.213 Sum_probs=55.9
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEe
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 145 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~ 145 (325)
.++.++++..|... ..+++++ |++.+||+++|+|+||+|||||+++|+++.+++.|.+.+.|..
T Consensus 129 ~~~r~~v~~~l~tG--i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeR 192 (433)
T PRK07594 129 AMVRQPITQPLMTG--IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER 192 (433)
T ss_pred ceeccCHhheeCCC--ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCC
Confidence 36777888777542 5799999 9999999999999999999999999999999999988877754
No 487
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=98.45 E-value=2.5e-06 Score=82.23 Aligned_cols=172 Identities=24% Similarity=0.342 Sum_probs=115.4
Q ss_pred EEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHH-cCCCCCCCeEEECCEeCCCCCHHHHhcceEEEcc
Q 020527 85 ISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL-RLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQ 163 (325)
Q Consensus 85 v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~-gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q 163 (325)
+++..+.+ ..+.+. -|++| ++.|+|.+=-||||||++|. |.|..--| ||.+.. --
T Consensus 227 ve~~LP~~---g~v~GM--GIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnHipG----DGRE~V--------------VT 282 (448)
T PF09818_consen 227 VEIELPNG---GTVTGM--GIPKG-VTLIVGGGYHGKSTLLEALERGVYNHIPG----DGREFV--------------VT 282 (448)
T ss_pred EEEECCCC---CEEEEE--eeCCc-EEEEECCCCccHHHHHHHHHhcccCCCCC----CCceEE--------------EE
Confidence 55655543 245554 57999 99999999999999999997 78765444 343211 00
Q ss_pred CCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC-CCCChHHHHHHHHHHHHcCCCCEEEEe
Q 020527 164 EPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSGGQKQRIAIARAILRDPAILLLD 242 (325)
Q Consensus 164 ~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~LSgGq~QRv~iAral~~~p~llllD 242 (325)
++.-. .|+ ..+. .....+.+..|+..+|.|.++.... .+=||-.-|=..|..||=..+++||+|
T Consensus 283 ~~~av--kir---------AEDG----R~V~~vDISpFI~~LP~g~dT~~FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiD 347 (448)
T PF09818_consen 283 DPDAV--KIR---------AEDG----RSVEGVDISPFINNLPGGKDTTCFSTENASGSTSQAANIMEALEAGARLLLID 347 (448)
T ss_pred CCCce--EEE---------ecCC----ceEeCccchHHHhhCCCCCCCCcccccCCCchHHHHHHHHHHHHcCCCEEEEc
Confidence 11000 000 0000 0123345677899999888776432 467999999999999999999999999
Q ss_pred CCCCCCCH-----HHHHHH----------HHHHHHhhccCCCCeEEEEEecCchHH-HhcCEEEEEeCCEE
Q 020527 243 EATSALDS-----ESEHYV----------KGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRI 297 (325)
Q Consensus 243 EPts~LD~-----~~~~~i----------~~~l~~l~~~~~~g~tvi~vtH~~~~~-~~~d~v~~l~~G~i 297 (325)
|=||+-.. ..+..+ .+.++.+.++ .|.+.|+|+=-.... ..||+|+.|++-+-
T Consensus 348 EDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~--~GvStIlV~Ggsgdy~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 348 EDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEK--LGVSTILVVGGSGDYFDVADRVIMMDEYRP 416 (448)
T ss_pred CcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHH--cCceEEEEeccchhhHhhCCEEEEecCccc
Confidence 99998543 333333 3445566543 588888888777665 56999999998764
No 488
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.44 E-value=1.7e-07 Score=88.34 Aligned_cols=72 Identities=17% Similarity=0.171 Sum_probs=53.6
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCC------CHHHHhcceEEEccCCcCcc-ccHHHHHh
Q 020527 106 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL------DIRWLREKIGFVGQEPQLLQ-MDIKSNIM 177 (325)
Q Consensus 106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~------~~~~~r~~i~~v~Q~~~l~~-~tv~enl~ 177 (325)
++|++++++|||||||||++..|++.+.+..++|.+.+.|.... .....+..+.+++|.....+ .++++++.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~ 190 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQ 190 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHH
Confidence 57899999999999999999999999998888999988776321 11223566889888654332 34555553
No 489
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.44 E-value=2.9e-07 Score=86.62 Aligned_cols=50 Identities=26% Similarity=0.313 Sum_probs=45.9
Q ss_pred CCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEe
Q 020527 95 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 145 (325)
Q Consensus 95 ~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~ 145 (325)
..+++++ +.+.+|++++|+|+||+|||||+++|+|+.+|+.|.+..-|.+
T Consensus 57 i~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer 106 (326)
T cd01136 57 VRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGER 106 (326)
T ss_pred cEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecC
Confidence 4699999 9999999999999999999999999999999999888776654
No 490
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.42 E-value=2.8e-07 Score=82.84 Aligned_cols=55 Identities=29% Similarity=0.492 Sum_probs=40.0
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCe----EEECCEeCCCCCHHHHhcceEEEccC
Q 020527 106 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ----IYIDGFPLTDLDIRWLREKIGFVGQE 164 (325)
Q Consensus 106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~----I~i~g~~i~~~~~~~~r~~i~~v~Q~ 164 (325)
.+..++||.||||||||||++.|++++++.+|. |.+|+.. .+ ...+...+++++.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~---~~-~~~~~~~g~~~~~ 89 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFH---LD-NAVLDAHGLRPRK 89 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEeccccc---CC-HHHHHhccccccc
Confidence 346799999999999999999999999999998 4444422 12 2223345666653
No 491
>PLN02796 D-glycerate 3-kinase
Probab=98.40 E-value=9.5e-08 Score=90.13 Aligned_cols=60 Identities=25% Similarity=0.307 Sum_probs=48.6
Q ss_pred CceeeeeEEe---eCCcE-----EEEEcCCCChHHHHHHHHHcCCCCC---CCeEEECCEeCCCCCHHHHh
Q 020527 96 PILNHVCLTI---EANEV-----VAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLDIRWLR 155 (325)
Q Consensus 96 ~iL~~isl~i---~~Ge~-----~~iiG~nGsGKSTLl~~l~gl~~~~---~G~I~i~g~~i~~~~~~~~r 155 (325)
.+++++++.+ ++|+. +||+|+||||||||++.|.+++++. .|.|.+||..+.......++
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~ 150 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLA 150 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHH
Confidence 4788888877 67776 9999999999999999999999874 68899999887554444444
No 492
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.40 E-value=2e-07 Score=90.97 Aligned_cols=82 Identities=23% Similarity=0.262 Sum_probs=57.7
Q ss_pred CCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC-CCCeEEECC---EeCCCCCHHHHh---cceEEE-----c
Q 020527 95 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYIDG---FPLTDLDIRWLR---EKIGFV-----G 162 (325)
Q Consensus 95 ~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~-~~G~I~i~g---~~i~~~~~~~~r---~~i~~v-----~ 162 (325)
..+++++ |.+.+|++++|+|+||||||||+++|+|+.++ +.|.|.+.| .++.++....++ .+.+++ +
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~ 230 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSD 230 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCC
Confidence 4588988 99999999999999999999999999999854 446666644 555443333332 335555 8
Q ss_pred cCCcC-c-----cccHHHHHh
Q 020527 163 QEPQL-L-----QMDIKSNIM 177 (325)
Q Consensus 163 Q~~~l-~-----~~tv~enl~ 177 (325)
|+|.. + ..++.|.+.
T Consensus 231 q~p~~rlnp~~va~~IAE~~r 251 (442)
T PRK06315 231 QSSQLRLNAAYVGTAIAEYFR 251 (442)
T ss_pred CCHHHHhhHHHHHHHHHHHHH
Confidence 88742 1 235566654
No 493
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.37 E-value=9.7e-06 Score=85.74 Aligned_cols=61 Identities=25% Similarity=0.337 Sum_probs=48.5
Q ss_pred HcCCCCEEEEeCCCCCCC-HHHHHHHHHHHHHhhccCCCCeEEEEEecCchHH----------HhcCEEEEEeCC
Q 020527 232 ILRDPAILLLDEATSALD-SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI----------KAVDRIVVIDDG 295 (325)
Q Consensus 232 l~~~p~llllDEPts~LD-~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~----------~~~d~v~~l~~G 295 (325)
+-.+|+++++|||+..|| +..+..+.+.++.+++ .|.+++++||+++.+ ..|+-.++|.+.
T Consensus 632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK---~~~~~i~~TQ~~~d~~~s~~~~~il~n~~t~i~L~~~ 703 (811)
T PRK13873 632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRK---KNVSVIFATQSLADIDGSAIAPAIIESCPTRIFLPNE 703 (811)
T ss_pred hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHH---cCCEEEEEECCHHHHhcCchHHHHHHhCCeeEEcCCc
Confidence 445899999999999999 7788899999999875 477999999998743 235656666554
No 494
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.37 E-value=9.7e-07 Score=87.10 Aligned_cols=42 Identities=24% Similarity=0.320 Sum_probs=33.0
Q ss_pred EeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCe-EEECCEe
Q 020527 104 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ-IYIDGFP 145 (325)
Q Consensus 104 ~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~-I~i~g~~ 145 (325)
-+.+|+++.|.|++|+|||||+..++.......+. +++.+.+
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EE 132 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEE 132 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcC
Confidence 48999999999999999999999887765444444 4666643
No 495
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=98.36 E-value=2.8e-07 Score=89.82 Aligned_cols=69 Identities=22% Similarity=0.239 Sum_probs=54.8
Q ss_pred CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCC---CeEEECCEeCCCCCH---HHHhcceEEEccCC
Q 020527 96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD---GQIYIDGFPLTDLDI---RWLREKIGFVGQEP 165 (325)
Q Consensus 96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~---G~I~i~g~~i~~~~~---~~~r~~i~~v~Q~~ 165 (325)
.+++.+ |++.+|++++|+|+||+|||||+++|+|+.+|+. |.|-+.|.++.++-. ..-....++|+|+.
T Consensus 164 raID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~ 238 (455)
T PRK07960 164 RAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAP 238 (455)
T ss_pred eeeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEEC
Confidence 466666 9999999999999999999999999999999985 899999998754211 11124577888765
No 496
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.36 E-value=3.9e-06 Score=68.05 Aligned_cols=58 Identities=22% Similarity=0.248 Sum_probs=41.1
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccC--CCCeEEEEEecCch
Q 020527 223 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC--KTKRTVIVIAHRLS 281 (325)
Q Consensus 223 ~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~--~~g~tvi~vtH~~~ 281 (325)
.+......+...++.++++||.-.. ++.....+.+.+..+.... ..+..+|+++++..
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 4556666677889999999998665 5666677777777764310 14678999998654
No 497
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.35 E-value=4.8e-07 Score=88.37 Aligned_cols=51 Identities=24% Similarity=0.284 Sum_probs=47.5
Q ss_pred CCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeC
Q 020527 95 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL 146 (325)
Q Consensus 95 ~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i 146 (325)
..+++++ +.+.+|++++|+|+||+|||||+++|+++.+++.|.|.+.|+.-
T Consensus 151 i~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGer~ 201 (441)
T PRK09099 151 VRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGERG 201 (441)
T ss_pred ceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccCh
Confidence 4699999 99999999999999999999999999999999999999888654
No 498
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.34 E-value=4.8e-07 Score=83.99 Aligned_cols=51 Identities=18% Similarity=0.135 Sum_probs=38.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCCC--CCCCeEEECCEeCCCCCHHHHhcceEE
Q 020527 109 EVVAIVGLSGSGKSTFVNLLLRLYE--PSDGQIYIDGFPLTDLDIRWLREKIGF 160 (325)
Q Consensus 109 e~~~iiG~nGsGKSTLl~~l~gl~~--~~~G~I~i~g~~i~~~~~~~~r~~i~~ 160 (325)
.++||.||||||||||+++|.+++. |.+|.|.+-+.|--..+... ++..++
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~-l~~~g~ 115 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQV-LKERNL 115 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHH-HHHcCC
Confidence 4899999999999999999999997 77888887665543333333 333454
No 499
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.34 E-value=1.8e-06 Score=82.97 Aligned_cols=41 Identities=24% Similarity=0.349 Sum_probs=33.1
Q ss_pred EeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEE-ECCE
Q 020527 104 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY-IDGF 144 (325)
Q Consensus 104 ~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~-i~g~ 144 (325)
-+.+|+++.|.|++|+|||||+..++.......+.+. +.+.
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E 119 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE 119 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 4789999999999999999999998877665556654 4553
No 500
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.33 E-value=1.1e-06 Score=67.39 Aligned_cols=47 Identities=40% Similarity=0.500 Sum_probs=35.2
Q ss_pred CCCChHHHHH-HHHHHH------HcC------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 020527 216 DLLSGGQKQR-IAIARA------ILR------DPAILLLDEATSALDSESEHYVKGVLHA 262 (325)
Q Consensus 216 ~~LSgGq~QR-v~iAra------l~~------~p~llllDEPts~LD~~~~~~i~~~l~~ 262 (325)
..+||||||. +.+|-+ +-. .|++++|||||++||+.....+++++++
T Consensus 31 ~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 31 GTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 5699999954 333332 223 3799999999999999999999988863
Done!