Query 020527
Match_columns 325
No_of_seqs 330 out of 2552
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 04:20:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020527.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020527hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qf4_A ABC transporter, ATP-bi 100.0 1.2E-66 4.3E-71 525.4 36.9 315 2-322 264-580 (587)
2 4a82_A Cystic fibrosis transme 100.0 5.3E-67 1.8E-71 527.5 33.9 313 2-320 262-576 (578)
3 3b5x_A Lipid A export ATP-bind 100.0 1.2E-65 4E-70 518.1 38.4 313 2-321 266-580 (582)
4 4f4c_A Multidrug resistance pr 100.0 1.1E-65 3.7E-70 558.0 38.4 315 2-321 337-654 (1321)
5 2yl4_A ATP-binding cassette SU 100.0 1.4E-65 4.7E-70 518.9 35.9 315 3-321 264-584 (595)
6 3b60_A Lipid A export ATP-bind 100.0 1.5E-65 5E-70 517.4 35.7 312 3-321 267-580 (582)
7 3qf4_B Uncharacterized ABC tra 100.0 3.4E-66 1.2E-70 523.4 28.4 312 3-322 279-592 (598)
8 3nh6_A ATP-binding cassette SU 100.0 1.3E-65 4.5E-70 478.1 27.7 274 41-321 15-290 (306)
9 4f4c_A Multidrug resistance pr 100.0 3.9E-66 1.3E-70 561.5 27.6 316 3-322 998-1318(1321)
10 3g5u_A MCG1178, multidrug resi 100.0 9E-62 3.1E-66 526.1 31.8 314 2-320 309-625 (1284)
11 3g5u_A MCG1178, multidrug resi 100.0 1.6E-60 5.4E-65 516.4 26.8 316 3-322 953-1272(1284)
12 2ff7_A Alpha-hemolysin translo 100.0 3.4E-59 1.1E-63 423.4 31.1 236 79-320 7-245 (247)
13 2ixe_A Antigen peptide transpo 100.0 5.4E-59 1.8E-63 427.5 30.0 241 79-321 16-258 (271)
14 2ghi_A Transport protein; mult 100.0 5.6E-58 1.9E-62 418.3 29.4 237 79-321 17-255 (260)
15 1mv5_A LMRA, multidrug resista 100.0 2.6E-59 9E-64 423.2 20.3 235 80-320 2-238 (243)
16 3tui_C Methionine import ATP-b 100.0 1E-58 3.5E-63 439.5 22.9 221 78-309 23-254 (366)
17 3gfo_A Cobalt import ATP-bindi 100.0 2.8E-58 9.7E-63 423.1 21.9 223 79-314 7-239 (275)
18 4g1u_C Hemin import ATP-bindin 100.0 1.8E-57 6.3E-62 416.1 22.8 217 79-309 11-238 (266)
19 3fvq_A Fe(3+) IONS import ATP- 100.0 2.5E-57 8.5E-62 429.6 24.3 218 79-310 4-230 (359)
20 3tif_A Uncharacterized ABC tra 100.0 5E-58 1.7E-62 412.8 18.5 221 80-307 2-233 (235)
21 3rlf_A Maltose/maltodextrin im 100.0 2.7E-57 9.2E-62 432.2 21.8 217 77-309 1-224 (381)
22 2olj_A Amino acid ABC transpor 100.0 1.1E-56 3.7E-61 410.2 23.0 216 79-309 24-249 (263)
23 1ji0_A ABC transporter; ATP bi 100.0 3.1E-56 1.1E-60 402.3 25.1 216 79-309 6-229 (240)
24 1b0u_A Histidine permease; ABC 100.0 4.5E-56 1.6E-60 406.2 24.6 216 79-309 6-243 (262)
25 2yyz_A Sugar ABC transporter, 100.0 4.2E-56 1.4E-60 422.0 25.0 217 78-310 2-225 (359)
26 1vpl_A ABC transporter, ATP-bi 100.0 3.4E-56 1.1E-60 405.5 23.3 217 76-308 12-235 (256)
27 3gd7_A Fusion complex of cysti 100.0 5.7E-56 1.9E-60 425.4 25.7 226 76-309 16-243 (390)
28 1g6h_A High-affinity branched- 100.0 3.5E-56 1.2E-60 405.9 22.7 216 79-305 7-239 (257)
29 2cbz_A Multidrug resistance-as 100.0 1.3E-55 4.3E-60 397.6 24.8 228 78-322 2-231 (237)
30 2pcj_A ABC transporter, lipopr 100.0 2.9E-56 9.9E-61 398.6 20.3 213 79-302 4-222 (224)
31 2it1_A 362AA long hypothetical 100.0 4E-56 1.4E-60 422.7 22.1 221 78-310 2-225 (362)
32 1v43_A Sugar-binding transport 100.0 1E-55 3.6E-60 421.2 24.5 218 77-310 9-233 (372)
33 1oxx_K GLCV, glucose, ABC tran 100.0 4.2E-56 1.4E-60 421.9 21.4 219 78-310 2-232 (353)
34 1z47_A CYSA, putative ABC-tran 100.0 1E-55 3.4E-60 418.6 23.0 216 79-310 14-237 (355)
35 2pze_A Cystic fibrosis transme 100.0 9.7E-55 3.3E-59 389.9 26.7 218 79-316 6-226 (229)
36 1g29_1 MALK, maltose transport 100.0 9.8E-56 3.3E-60 421.8 21.0 217 78-310 2-231 (372)
37 3d31_A Sulfate/molybdate ABC t 100.0 2.5E-55 8.5E-60 415.4 22.8 214 80-310 2-219 (348)
38 2yz2_A Putative ABC transporte 100.0 4.9E-55 1.7E-59 400.2 23.9 216 79-309 2-228 (266)
39 2ihy_A ABC transporter, ATP-bi 100.0 1.7E-55 5.8E-60 405.6 19.0 219 79-309 21-253 (279)
40 2onk_A Molybdate/tungstate ABC 100.0 2.9E-55 1E-59 395.8 20.0 215 80-310 2-218 (240)
41 2qi9_C Vitamin B12 import ATP- 100.0 1.7E-54 5.9E-59 392.7 22.2 210 79-308 4-222 (249)
42 2d2e_A SUFC protein; ABC-ATPas 100.0 1.9E-54 6.3E-59 393.0 18.5 216 79-305 3-230 (250)
43 2zu0_C Probable ATP-dependent 100.0 1.6E-53 5.4E-58 390.4 18.3 218 79-307 20-253 (267)
44 2nq2_C Hypothetical ABC transp 100.0 4.5E-53 1.5E-57 384.4 20.4 203 79-309 4-218 (253)
45 2pjz_A Hypothetical protein ST 100.0 2E-52 6.8E-57 382.0 18.3 208 80-308 2-215 (263)
46 2bbs_A Cystic fibrosis transme 100.0 2.7E-51 9.3E-56 379.4 24.9 211 79-314 40-253 (290)
47 1sgw_A Putative ABC transporte 100.0 8.7E-52 3E-56 366.8 12.8 196 79-297 10-210 (214)
48 3bk7_A ABC transporter ATP-bin 100.0 4.3E-44 1.5E-48 361.2 15.0 203 79-309 357-564 (607)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 3.9E-44 1.3E-48 357.5 13.2 203 79-309 287-494 (538)
50 3ozx_A RNAse L inhibitor; ATP 100.0 2.3E-43 7.9E-48 351.5 17.1 202 79-307 269-476 (538)
51 3j16_B RLI1P; ribosome recycli 100.0 1.3E-41 4.4E-46 342.8 14.3 202 83-310 350-561 (608)
52 3ux8_A Excinuclease ABC, A sub 100.0 2.9E-41 1E-45 345.4 15.6 209 96-311 32-301 (670)
53 3bk7_A ABC transporter ATP-bin 100.0 1E-41 3.5E-46 343.8 11.7 198 79-295 83-304 (607)
54 1yqt_A RNAse L inhibitor; ATP- 100.0 8.9E-42 3E-46 340.5 9.7 197 80-295 21-234 (538)
55 2iw3_A Elongation factor 3A; a 100.0 1.3E-40 4.5E-45 347.6 18.6 197 79-302 671-981 (986)
56 2iw3_A Elongation factor 3A; a 100.0 2.8E-38 9.5E-43 330.1 27.7 196 79-308 435-635 (986)
57 3ux8_A Excinuclease ABC, A sub 100.0 3.3E-39 1.1E-43 330.2 12.1 201 96-310 336-642 (670)
58 3j16_B RLI1P; ribosome recycli 100.0 9.1E-39 3.1E-43 322.0 12.7 197 84-297 82-299 (608)
59 3ozx_A RNAse L inhibitor; ATP 100.0 7.7E-39 2.6E-43 318.9 7.2 192 84-296 4-214 (538)
60 3pih_A Uvrabc system protein A 100.0 7.1E-36 2.4E-40 311.4 16.8 209 96-317 598-911 (916)
61 2v9p_A Replication protein E1; 100.0 1E-40 3.4E-45 309.8 -20.5 241 7-319 32-274 (305)
62 2r6f_A Excinuclease ABC subuni 100.0 9.8E-36 3.3E-40 309.0 14.1 212 79-311 629-945 (972)
63 2vf7_A UVRA2, excinuclease ABC 100.0 1.9E-35 6.5E-40 305.9 14.4 214 79-311 502-830 (842)
64 2ygr_A Uvrabc system protein A 100.0 5.9E-35 2E-39 304.1 15.5 216 79-315 647-967 (993)
65 4aby_A DNA repair protein RECN 100.0 9.2E-34 3.1E-38 273.7 18.4 199 97-301 50-381 (415)
66 2npi_A Protein CLP1; CLP1-PCF1 100.0 3E-37 1E-41 301.9 -9.1 195 79-308 118-338 (460)
67 1e69_A Chromosome segregation 100.0 3.7E-30 1.3E-34 241.2 14.7 202 99-305 16-310 (322)
68 3b85_A Phosphate starvation-in 100.0 2.6E-33 8.7E-38 247.2 -6.5 157 96-296 14-171 (208)
69 3qf7_A RAD50; ABC-ATPase, ATPa 100.0 1.7E-29 5.8E-34 240.7 15.1 81 216-299 278-364 (365)
70 4gp7_A Metallophosphoesterase; 100.0 1.4E-30 4.9E-35 222.4 5.7 149 100-289 1-168 (171)
71 2pt7_A CAG-ALFA; ATPase, prote 99.9 1.3E-32 4.3E-37 258.9 -19.1 214 6-296 62-291 (330)
72 1ye8_A Protein THEP1, hypothet 99.9 5E-29 1.7E-33 214.5 3.3 147 110-299 2-159 (178)
73 1tq4_A IIGP1, interferon-induc 99.9 5.4E-31 1.8E-35 253.9 -10.1 176 96-295 37-254 (413)
74 1znw_A Guanylate kinase, GMP k 99.9 3.5E-30 1.2E-34 226.3 -9.3 171 95-293 9-202 (207)
75 2dpy_A FLII, flagellum-specifi 99.9 5.2E-30 1.8E-34 249.4 -11.4 197 79-307 131-343 (438)
76 3b9q_A Chloroplast SRP recepto 99.9 5.9E-29 2E-33 231.1 -4.0 176 97-297 89-284 (302)
77 1z6g_A Guanylate kinase; struc 99.9 4.2E-30 1.4E-34 228.0 -14.3 171 96-283 11-197 (218)
78 2og2_A Putative signal recogni 99.9 1.1E-27 3.9E-32 226.9 -2.6 174 99-297 148-341 (359)
79 3sop_A Neuronal-specific septi 99.9 7.6E-28 2.6E-32 220.3 -4.4 147 110-283 4-153 (270)
80 2o5v_A DNA replication and rep 99.9 1.7E-24 5.7E-29 205.4 17.0 81 217-306 265-354 (359)
81 3aez_A Pantothenate kinase; tr 99.9 3.8E-29 1.3E-33 233.4 -16.7 202 49-296 16-246 (312)
82 2o8b_B DNA mismatch repair pro 99.9 1.2E-24 4E-29 230.2 12.9 171 79-303 750-937 (1022)
83 2obl_A ESCN; ATPase, hydrolase 99.9 2.3E-26 7.8E-31 217.5 -1.6 194 79-306 45-253 (347)
84 1tf7_A KAIC; homohexamer, hexa 99.9 5E-27 1.7E-31 233.7 -7.1 179 80-294 13-209 (525)
85 3qkt_A DNA double-strand break 99.9 3.2E-23 1.1E-27 195.4 15.7 75 216-293 247-327 (339)
86 1cr0_A DNA primase/helicase; R 99.9 2.2E-24 7.6E-29 199.1 6.9 183 96-297 23-237 (296)
87 4ad8_A DNA repair protein RECN 99.9 1.4E-23 4.9E-28 208.4 12.9 76 216-295 395-473 (517)
88 3pih_A Uvrabc system protein A 99.9 1.7E-23 5.7E-28 218.4 11.6 164 124-310 384-562 (916)
89 3thx_A DNA mismatch repair pro 99.9 2.1E-22 7.3E-27 210.8 17.2 168 79-306 631-811 (934)
90 2ehv_A Hypothetical protein PH 99.9 1.6E-24 5.6E-29 193.8 0.8 182 79-293 6-206 (251)
91 1tf7_A KAIC; homohexamer, hexa 99.9 6E-23 2.1E-27 204.3 8.1 153 102-296 275-444 (525)
92 2eyu_A Twitching motility prot 99.9 1.5E-23 5E-28 190.9 2.7 130 96-292 15-145 (261)
93 4a74_A DNA repair and recombin 99.9 2.7E-23 9.1E-28 183.6 3.2 149 104-295 21-200 (231)
94 1ewq_A DNA mismatch repair pro 99.9 1.5E-22 5.1E-27 208.5 8.2 147 79-286 550-704 (765)
95 2r6f_A Excinuclease ABC subuni 99.9 7.2E-22 2.5E-26 205.4 10.4 136 168-309 450-601 (972)
96 2jeo_A Uridine-cytidine kinase 99.9 3.5E-23 1.2E-27 186.3 0.2 169 95-308 12-187 (245)
97 2qnr_A Septin-2, protein NEDD5 99.9 1.7E-23 5.8E-28 194.3 -2.5 164 83-281 2-168 (301)
98 1w1w_A Structural maintenance 99.9 9E-22 3.1E-26 191.1 9.4 74 217-293 333-410 (430)
99 2vf7_A UVRA2, excinuclease ABC 99.9 2.4E-22 8.3E-27 208.1 5.4 181 116-309 270-476 (842)
100 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 6.1E-21 2.1E-25 159.1 11.1 80 215-297 55-142 (148)
101 3szr_A Interferon-induced GTP- 99.8 4.4E-24 1.5E-28 215.8 -9.7 191 79-305 10-234 (608)
102 2i3b_A HCR-ntpase, human cance 99.8 1.9E-23 6.6E-28 181.2 -5.6 170 108-318 1-182 (189)
103 3thx_B DNA mismatch repair pro 99.8 1.1E-21 3.7E-26 205.0 6.4 151 79-287 640-803 (918)
104 2ygr_A Uvrabc system protein A 99.8 1.3E-20 4.6E-25 196.5 13.8 136 168-309 467-618 (993)
105 2w0m_A SSO2452; RECA, SSPF, un 99.8 5.3E-22 1.8E-26 175.1 2.2 167 95-295 9-192 (235)
106 1pzn_A RAD51, DNA repair and r 99.8 2.6E-22 8.8E-27 190.0 -0.2 164 96-302 118-309 (349)
107 2gza_A Type IV secretion syste 99.8 9.2E-25 3.2E-29 207.7 -17.3 228 2-295 51-302 (361)
108 1rj9_A FTSY, signal recognitio 99.8 1.7E-22 5.9E-27 187.6 -1.8 165 107-296 101-284 (304)
109 3asz_A Uridine kinase; cytidin 99.8 1E-23 3.5E-28 184.8 -12.2 143 105-280 3-161 (211)
110 1wb9_A DNA mismatch repair pro 99.8 8E-21 2.7E-25 196.6 5.2 167 79-298 577-748 (800)
111 1pui_A ENGB, probable GTP-bind 99.8 2E-22 7E-27 175.5 -6.8 170 79-265 3-198 (210)
112 3jvv_A Twitching mobility prot 99.8 1.2E-20 4E-25 178.9 3.8 146 83-294 92-245 (356)
113 1lw7_A Transcriptional regulat 99.8 3.8E-22 1.3E-26 189.8 -7.5 177 97-306 157-353 (365)
114 2qag_C Septin-7; cell cycle, c 99.8 1.2E-20 4.3E-25 182.1 0.3 164 79-282 11-179 (418)
115 2f1r_A Molybdopterin-guanine d 99.8 9.2E-22 3.1E-26 168.0 -7.6 137 109-265 3-161 (171)
116 1nlf_A Regulatory protein REPA 99.8 6.6E-19 2.2E-23 161.1 7.9 153 104-283 26-184 (279)
117 1s96_A Guanylate kinase, GMP k 99.7 7.2E-20 2.5E-24 162.3 -0.5 142 103-307 11-159 (219)
118 2qag_B Septin-6, protein NEDD5 99.7 2.6E-19 8.8E-24 172.6 2.2 179 79-279 16-218 (427)
119 3kta_B Chromosome segregation 99.7 1.3E-17 4.3E-22 142.5 10.7 78 216-297 63-146 (173)
120 2cvh_A DNA repair and recombin 99.7 4.5E-17 1.5E-21 142.5 13.0 152 96-295 7-185 (220)
121 2ewv_A Twitching motility prot 99.7 9.3E-19 3.2E-23 166.9 2.2 126 97-289 127-253 (372)
122 1lvg_A Guanylate kinase, GMP k 99.7 1.6E-20 5.6E-25 163.6 -9.3 158 106-294 2-173 (198)
123 1zp6_A Hypothetical protein AT 99.7 6.8E-20 2.3E-24 157.6 -7.9 141 104-264 5-148 (191)
124 1nij_A Hypothetical protein YJ 99.7 6E-20 2.1E-24 171.6 -11.7 152 109-281 5-190 (318)
125 1n0w_A DNA repair protein RAD5 99.7 5.1E-17 1.8E-21 144.3 7.7 147 104-295 20-209 (243)
126 2qm8_A GTPase/ATPase; G protei 99.7 1.9E-20 6.4E-25 176.4 -16.4 179 79-265 29-260 (337)
127 2yhs_A FTSY, cell division pro 99.7 3.4E-18 1.2E-22 167.0 -1.9 156 98-278 283-447 (503)
128 2bbw_A Adenylate kinase 4, AK4 99.7 6E-19 2.1E-23 158.4 -7.5 139 107-265 26-198 (246)
129 2bdt_A BH3686; alpha-beta prot 99.7 7.3E-20 2.5E-24 157.6 -13.1 171 108-307 2-183 (189)
130 1htw_A HI0065; nucleotide-bind 99.6 5E-18 1.7E-22 142.9 -2.5 89 81-178 9-97 (158)
131 3e70_C DPA, signal recognition 99.6 2.9E-17 1E-21 153.9 -0.9 166 104-298 125-307 (328)
132 3lda_A DNA repair protein RAD5 99.6 5.6E-16 1.9E-20 148.8 7.1 148 104-295 174-363 (400)
133 1odf_A YGR205W, hypothetical 3 99.6 5.2E-18 1.8E-22 156.5 -7.7 131 106-252 29-169 (290)
134 2rcn_A Probable GTPase ENGC; Y 99.6 9.5E-17 3.2E-21 151.7 -1.5 122 96-232 204-328 (358)
135 3auy_A DNA double-strand break 99.6 6.7E-15 2.3E-19 140.1 10.6 74 216-293 279-359 (371)
136 3ec2_A DNA replication protein 99.5 6.1E-16 2.1E-20 131.9 1.5 112 102-281 32-144 (180)
137 1sxj_E Activator 1 40 kDa subu 99.5 6E-15 2.1E-19 138.5 8.4 138 110-283 38-177 (354)
138 2yv5_A YJEQ protein; hydrolase 99.5 6E-16 2.1E-20 143.4 0.7 115 104-230 161-300 (302)
139 2kjq_A DNAA-related protein; s 99.5 7.7E-15 2.6E-19 122.1 6.7 92 97-279 30-124 (149)
140 2oap_1 GSPE-2, type II secreti 99.5 2.7E-17 9.4E-22 162.6 -11.9 174 96-287 248-458 (511)
141 1p9r_A General secretion pathw 99.5 7.9E-17 2.7E-21 155.6 -8.9 129 97-240 158-314 (418)
142 2x8a_A Nuclear valosin-contain 99.5 1.2E-17 4.2E-22 152.7 -14.3 129 96-246 34-164 (274)
143 3c8u_A Fructokinase; YP_612366 99.5 6.9E-17 2.4E-21 141.4 -9.3 141 105-288 19-168 (208)
144 1u0l_A Probable GTPase ENGC; p 99.4 5.6E-15 1.9E-19 136.8 -0.9 103 103-206 164-289 (301)
145 1udx_A The GTP-binding protein 99.4 5E-15 1.7E-19 142.8 -1.7 156 98-278 147-306 (416)
146 1sq5_A Pantothenate kinase; P- 99.3 8.1E-15 2.8E-19 136.1 -7.3 137 79-250 37-199 (308)
147 3euj_A Chromosome partition pr 99.3 5E-13 1.7E-17 130.7 4.9 52 96-148 18-69 (483)
148 1in4_A RUVB, holliday junction 99.3 1.9E-16 6.4E-21 148.7 -19.8 176 80-288 19-211 (334)
149 3tr0_A Guanylate kinase, GMP k 99.3 2E-13 6.8E-18 118.1 0.5 72 102-177 1-73 (205)
150 1t9h_A YLOQ, probable GTPase E 99.3 1.1E-13 3.6E-18 128.4 -1.8 73 103-177 168-248 (307)
151 1vma_A Cell division protein F 99.3 7E-13 2.4E-17 122.9 3.1 99 100-246 96-197 (306)
152 2px0_A Flagellar biosynthesis 99.3 5E-12 1.7E-16 116.7 8.4 143 106-300 103-247 (296)
153 2dr3_A UPF0273 protein PH0284; 99.3 1.9E-12 6.3E-17 114.9 5.1 171 96-294 10-196 (247)
154 1ls1_A Signal recognition part 99.2 2.5E-11 8.6E-16 111.9 9.9 143 80-278 77-220 (295)
155 1iy2_A ATP-dependent metallopr 99.2 3.9E-15 1.3E-19 135.8 -15.8 139 80-245 50-195 (278)
156 1ixz_A ATP-dependent metallopr 99.2 4.5E-15 1.5E-19 133.4 -15.6 140 80-246 26-172 (254)
157 1qhl_A Protein (cell division 99.2 2.8E-13 9.6E-18 120.3 -4.1 75 79-164 9-91 (227)
158 2zr9_A Protein RECA, recombina 99.2 4.4E-11 1.5E-15 112.8 10.6 144 104-301 57-236 (349)
159 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 4E-15 1.4E-19 142.3 -17.6 170 104-303 16-208 (392)
160 1oix_A RAS-related protein RAB 99.2 7.9E-13 2.7E-17 113.6 -1.7 141 110-262 31-188 (191)
161 2ius_A DNA translocase FTSK; n 99.2 1.3E-12 4.4E-17 128.7 -0.6 169 99-281 158-343 (512)
162 2r6a_A DNAB helicase, replicat 99.1 7.5E-12 2.6E-16 122.1 1.2 179 96-297 191-401 (454)
163 3k1j_A LON protease, ATP-depen 99.1 2.1E-12 7.1E-17 130.4 -3.6 156 96-262 48-227 (604)
164 3lnc_A Guanylate kinase, GMP k 99.0 4.8E-11 1.7E-15 105.5 1.9 183 96-296 15-212 (231)
165 4e22_A Cytidylate kinase; P-lo 99.0 1.8E-11 6.2E-16 110.1 -1.6 72 106-177 25-114 (252)
166 2f9l_A RAB11B, member RAS onco 99.0 7.8E-11 2.7E-15 101.4 1.0 36 226-263 130-165 (199)
167 2dy1_A Elongation factor G; tr 98.9 6.7E-10 2.3E-14 113.2 4.3 134 102-282 3-138 (665)
168 4eun_A Thermoresistant glucoki 98.9 2.1E-10 7.2E-15 99.2 -0.1 70 102-176 23-93 (200)
169 1svm_A Large T antigen; AAA+ f 98.8 6.1E-12 2.1E-16 119.8 -11.7 137 96-246 157-312 (377)
170 3hr8_A Protein RECA; alpha and 98.8 5.6E-09 1.9E-13 98.5 8.2 61 104-167 57-118 (356)
171 1cke_A CK, MSSA, protein (cyti 98.8 2.5E-11 8.6E-16 106.6 -7.5 69 108-176 5-91 (227)
172 3kta_A Chromosome segregation 98.8 2E-09 6.7E-14 91.3 3.8 69 97-166 14-90 (182)
173 3t34_A Dynamin-related protein 98.8 2.2E-09 7.4E-14 101.4 3.9 174 96-278 25-212 (360)
174 3nwj_A ATSK2; P loop, shikimat 98.8 4.7E-10 1.6E-14 101.0 -1.3 52 79-132 17-72 (250)
175 2ce7_A Cell division protein F 98.8 1.1E-08 3.9E-13 100.0 8.3 118 96-283 39-167 (476)
176 3a00_A Guanylate kinase, GMP k 98.8 1.6E-09 5.3E-14 92.7 1.9 26 108-133 1-26 (186)
177 2j41_A Guanylate kinase; GMP, 98.8 2E-09 6.8E-14 92.7 2.5 63 103-168 1-63 (207)
178 2dhr_A FTSH; AAA+ protein, hex 98.7 4.8E-11 1.7E-15 117.4 -9.6 140 81-247 42-188 (499)
179 1zu4_A FTSY; GTPase, signal re 98.7 2.4E-09 8.2E-14 99.7 2.3 79 98-176 95-184 (320)
180 1kgd_A CASK, peripheral plasma 98.7 7.5E-10 2.6E-14 94.2 -1.4 35 107-141 4-39 (180)
181 3ney_A 55 kDa erythrocyte memb 98.7 2E-09 6.9E-14 93.3 0.8 71 103-179 14-97 (197)
182 3uie_A Adenylyl-sulfate kinase 98.7 5.3E-10 1.8E-14 96.6 -3.1 61 83-147 3-65 (200)
183 2qtf_A Protein HFLX, GTP-bindi 98.7 7.9E-09 2.7E-13 97.9 4.7 146 107-264 177-352 (364)
184 3vaa_A Shikimate kinase, SK; s 98.6 2.2E-08 7.6E-13 86.3 3.6 45 88-132 5-49 (199)
185 1jjv_A Dephospho-COA kinase; P 98.6 1.5E-08 5.1E-13 87.6 1.8 70 218-294 60-132 (206)
186 4a1f_A DNAB helicase, replicat 98.5 1.4E-07 4.7E-12 88.4 7.8 129 97-278 35-164 (338)
187 2xau_A PRE-mRNA-splicing facto 98.5 7.4E-08 2.5E-12 99.7 6.3 68 217-287 190-260 (773)
188 2e87_A Hypothetical protein PH 98.5 2E-07 6.9E-12 87.8 7.4 61 216-281 230-293 (357)
189 1knq_A Gluconate kinase; ALFA/ 98.4 1.8E-08 6E-13 84.7 -0.6 38 106-147 6-43 (175)
190 1rz3_A Hypothetical protein rb 98.4 5.8E-08 2E-12 83.9 1.8 45 105-149 19-63 (201)
191 2vp4_A Deoxynucleoside kinase; 98.4 7.2E-08 2.5E-12 85.1 2.3 62 103-168 15-86 (230)
192 1fnn_A CDC6P, cell division co 98.4 2.2E-06 7.4E-11 80.5 12.1 49 234-283 124-172 (389)
193 2qt1_A Nicotinamide riboside k 98.3 4.2E-07 1.4E-11 78.4 4.6 45 103-170 16-60 (207)
194 3tau_A Guanylate kinase, GMP k 98.3 3.8E-07 1.3E-11 79.2 4.0 29 106-134 6-34 (208)
195 3cr8_A Sulfate adenylyltranfer 98.3 2E-07 6.7E-12 92.8 2.3 61 104-164 365-437 (552)
196 3tqc_A Pantothenate kinase; bi 98.3 8.7E-08 3E-12 89.1 -0.8 44 96-139 74-125 (321)
197 1v5w_A DMC1, meiotic recombina 98.2 5.5E-07 1.9E-11 84.4 4.2 28 104-131 118-145 (343)
198 2z43_A DNA repair and recombin 98.2 4.2E-07 1.4E-11 84.5 2.8 28 104-131 103-130 (324)
199 3m6a_A ATP-dependent protease 98.2 2.1E-07 7E-12 92.7 -0.2 60 82-145 86-145 (543)
200 1ega_A Protein (GTP-binding pr 98.2 6.4E-07 2.2E-11 82.4 3.1 145 108-283 8-162 (301)
201 2qby_A CDC6 homolog 1, cell di 98.1 2.1E-06 7.3E-11 80.1 5.9 31 106-136 43-73 (386)
202 3ice_A Transcription terminati 98.1 3.4E-07 1.2E-11 86.7 -0.2 53 78-132 132-198 (422)
203 1ypw_A Transitional endoplasmi 98.1 2.8E-07 9.4E-12 95.9 -1.0 31 103-133 233-263 (806)
204 3b9p_A CG5977-PA, isoform A; A 98.1 2.3E-05 7.9E-10 71.1 11.8 75 219-293 97-187 (297)
205 2p67_A LAO/AO transport system 98.1 3.4E-07 1.2E-11 85.7 -0.6 51 96-146 44-94 (341)
206 3kl4_A SRP54, signal recogniti 98.1 7.3E-06 2.5E-10 79.1 8.6 40 107-146 96-135 (433)
207 3bh0_A DNAB-like replicative h 98.1 9.2E-06 3.2E-10 75.1 8.9 130 96-278 56-189 (315)
208 1kag_A SKI, shikimate kinase I 98.1 1.5E-06 5.1E-11 72.5 2.8 33 107-143 3-35 (173)
209 2z4s_A Chromosomal replication 98.1 5.5E-06 1.9E-10 80.2 7.1 44 234-280 193-237 (440)
210 1mky_A Probable GTP-binding pr 98.0 2.3E-06 7.9E-11 82.8 4.2 67 110-176 182-261 (439)
211 2pez_A Bifunctional 3'-phospho 98.0 9.4E-07 3.2E-11 74.4 0.6 40 106-146 3-44 (179)
212 2www_A Methylmalonic aciduria 98.0 1.8E-06 6E-11 81.2 1.7 42 106-147 72-113 (349)
213 1f2t_A RAD50 ABC-ATPase; DNA d 98.0 4.4E-06 1.5E-10 68.8 3.8 32 98-130 14-45 (149)
214 3lxx_A GTPase IMAP family memb 97.9 6.8E-05 2.3E-09 65.9 11.4 28 110-137 31-58 (239)
215 4eaq_A DTMP kinase, thymidylat 97.9 4.5E-06 1.5E-10 73.7 3.4 45 97-142 12-59 (229)
216 3cf0_A Transitional endoplasmi 97.9 2.4E-05 8.3E-10 71.6 7.2 29 104-132 45-73 (301)
217 1m7g_A Adenylylsulfate kinase; 97.8 2.6E-06 9E-11 73.8 0.5 43 103-145 20-64 (211)
218 2ffh_A Protein (FFH); SRP54, s 97.8 5.5E-06 1.9E-10 79.8 2.1 60 81-147 78-137 (425)
219 1f6b_A SAR1; gtpases, N-termin 97.8 4.6E-06 1.6E-10 71.3 1.0 56 87-145 7-70 (198)
220 1m2o_B GTP-binding protein SAR 97.8 1.7E-05 5.8E-10 67.2 4.3 34 96-130 12-45 (190)
221 2gj8_A MNME, tRNA modification 97.7 1.8E-05 6.1E-10 66.0 4.1 27 106-132 2-28 (172)
222 1l8q_A Chromosomal replication 97.7 4.8E-05 1.6E-09 70.0 7.0 43 234-279 97-140 (324)
223 3llm_A ATP-dependent RNA helic 97.7 3.9E-05 1.3E-09 67.5 6.0 128 105-260 73-202 (235)
224 1j8m_F SRP54, signal recogniti 97.7 4.6E-06 1.6E-10 76.6 -0.5 61 81-147 76-137 (297)
225 1u94_A RECA protein, recombina 97.7 0.00032 1.1E-08 65.9 11.9 28 105-132 60-87 (356)
226 3qks_A DNA double-strand break 97.7 2.5E-05 8.6E-10 67.5 3.8 31 98-129 14-44 (203)
227 3h4m_A Proteasome-activating n 97.6 0.00012 4.2E-09 65.7 8.2 28 105-132 48-75 (285)
228 1sxj_C Activator 1 40 kDa subu 97.6 1.4E-06 4.6E-11 81.2 -5.0 50 96-145 32-83 (340)
229 2yvu_A Probable adenylyl-sulfa 97.6 1.7E-05 5.9E-10 66.9 2.3 36 105-140 10-45 (186)
230 1y63_A LMAJ004144AAA protein; 97.6 2.7E-05 9.3E-10 65.8 3.3 32 100-131 2-33 (184)
231 3bos_A Putative DNA replicatio 97.6 2.9E-05 1E-09 67.4 3.2 27 107-133 51-77 (242)
232 2qor_A Guanylate kinase; phosp 97.5 2.9E-05 9.8E-10 66.8 2.5 30 104-133 8-37 (204)
233 2wji_A Ferrous iron transport 97.5 7.9E-05 2.7E-09 61.3 4.8 24 110-133 5-28 (165)
234 2qag_A Septin-2, protein NEDD5 97.5 5E-06 1.7E-10 78.4 -3.1 56 79-143 17-72 (361)
235 2if2_A Dephospho-COA kinase; a 97.5 4.4E-05 1.5E-09 65.2 3.1 22 110-131 3-24 (204)
236 2ohf_A Protein OLA1, GTP-bindi 97.5 4.4E-05 1.5E-09 72.7 3.4 41 104-144 18-69 (396)
237 2wjg_A FEOB, ferrous iron tran 97.5 5.3E-05 1.8E-09 63.3 3.5 22 110-131 9-30 (188)
238 2q6t_A DNAB replication FORK h 97.5 0.0004 1.4E-08 67.0 10.1 176 96-293 188-396 (444)
239 1sxj_D Activator 1 41 kDa subu 97.4 2E-05 6.7E-10 73.0 -0.0 43 235-282 133-175 (353)
240 3t61_A Gluconokinase; PSI-biol 97.4 3.2E-05 1.1E-09 66.1 1.0 34 108-145 18-51 (202)
241 1np6_A Molybdopterin-guanine d 97.4 6.2E-05 2.1E-09 63.6 2.5 37 109-145 7-46 (174)
242 2zej_A Dardarin, leucine-rich 97.4 8.9E-05 3E-09 62.2 3.2 26 110-135 4-29 (184)
243 1lv7_A FTSH; alpha/beta domain 97.4 8.6E-05 2.9E-09 65.9 3.2 45 97-145 36-80 (257)
244 2p5t_B PEZT; postsegregational 97.3 5.2E-05 1.8E-09 67.6 1.7 41 104-146 28-68 (253)
245 2ga8_A Hypothetical 39.9 kDa p 97.3 2.9E-05 1E-09 72.8 -0.2 37 96-132 10-48 (359)
246 3auy_A DNA double-strand break 97.3 0.00014 4.8E-09 68.6 4.2 32 97-129 15-46 (371)
247 1njg_A DNA polymerase III subu 97.3 0.00023 7.8E-09 61.1 4.9 45 234-283 125-169 (250)
248 3cm0_A Adenylate kinase; ATP-b 97.3 0.00012 4.2E-09 61.3 2.9 26 106-131 2-27 (186)
249 3r20_A Cytidylate kinase; stru 97.2 6.3E-05 2.2E-09 66.6 0.4 32 108-139 9-43 (233)
250 1q3t_A Cytidylate kinase; nucl 97.2 0.00019 6.4E-09 63.1 3.5 35 105-139 13-50 (236)
251 1qhx_A CPT, protein (chloramph 97.1 0.00025 8.4E-09 59.0 3.7 26 108-133 3-28 (178)
252 3kb2_A SPBC2 prophage-derived 97.1 0.00023 7.8E-09 58.6 3.3 23 110-132 3-25 (173)
253 1xp8_A RECA protein, recombina 97.0 0.0027 9.4E-08 59.7 10.2 27 104-130 70-96 (366)
254 2v1u_A Cell division control p 97.0 0.00031 1.1E-08 65.4 3.4 28 106-133 42-69 (387)
255 1kht_A Adenylate kinase; phosp 97.0 0.00037 1.3E-08 58.4 3.5 25 108-132 3-27 (192)
256 3ihw_A Centg3; RAS, centaurin, 97.0 0.00065 2.2E-08 57.0 5.0 35 110-144 22-65 (184)
257 4ag6_A VIRB4 ATPase, type IV s 97.0 0.00027 9.3E-09 66.9 2.9 59 234-295 261-335 (392)
258 1uf9_A TT1252 protein; P-loop, 97.0 0.00034 1.2E-08 59.3 3.2 32 108-144 8-39 (203)
259 2rhm_A Putative kinase; P-loop 97.0 0.00036 1.2E-08 58.6 3.1 27 106-132 3-29 (193)
260 1gtv_A TMK, thymidylate kinase 97.0 0.0001 3.5E-09 63.2 -0.4 26 110-135 2-27 (214)
261 1vht_A Dephospho-COA kinase; s 97.0 0.0004 1.4E-08 59.9 3.4 24 107-130 3-26 (218)
262 1jal_A YCHF protein; nucleotid 97.0 0.00065 2.2E-08 63.9 5.0 36 108-143 2-48 (363)
263 3lw7_A Adenylate kinase relate 96.9 0.0004 1.4E-08 56.9 3.1 19 110-128 3-21 (179)
264 1fzq_A ADP-ribosylation factor 96.9 0.00046 1.6E-08 57.6 3.2 22 110-131 18-39 (181)
265 3trf_A Shikimate kinase, SK; a 96.9 0.00052 1.8E-08 57.4 3.5 26 107-132 4-29 (185)
266 3bgw_A DNAB-like replicative h 96.9 0.0037 1.3E-07 60.4 10.0 34 97-130 186-219 (444)
267 1ex7_A Guanylate kinase; subst 96.9 0.00044 1.5E-08 59.0 3.0 21 111-131 4-24 (186)
268 3d8b_A Fidgetin-like protein 1 96.9 0.0046 1.6E-07 57.7 10.3 27 106-132 115-141 (357)
269 1gvn_B Zeta; postsegregational 96.9 0.00051 1.7E-08 62.5 3.6 36 106-143 31-66 (287)
270 3iij_A Coilin-interacting nucl 96.9 0.0003 1E-08 58.8 1.9 26 106-131 9-34 (180)
271 2ze6_A Isopentenyl transferase 96.9 0.00045 1.5E-08 61.6 3.1 23 110-132 3-25 (253)
272 2jaq_A Deoxyguanosine kinase; 96.9 0.00049 1.7E-08 58.2 3.2 23 110-132 2-24 (205)
273 4dcu_A GTP-binding protein ENG 96.8 0.00046 1.6E-08 66.9 2.9 56 221-283 88-144 (456)
274 2v54_A DTMP kinase, thymidylat 96.8 0.00072 2.5E-08 57.3 3.8 26 107-132 3-28 (204)
275 3cmw_A Protein RECA, recombina 96.8 0.0054 1.9E-07 67.9 11.6 35 105-139 729-763 (1706)
276 1via_A Shikimate kinase; struc 96.8 0.00049 1.7E-08 57.3 2.7 23 110-132 6-28 (175)
277 1ly1_A Polynucleotide kinase; 96.8 0.00069 2.4E-08 56.1 3.3 22 109-130 3-24 (181)
278 2c95_A Adenylate kinase 1; tra 96.8 0.00074 2.5E-08 56.8 3.3 27 106-132 7-33 (196)
279 2wwf_A Thymidilate kinase, put 96.8 0.0008 2.7E-08 57.4 3.5 27 106-132 8-34 (212)
280 2plr_A DTMP kinase, probable t 96.7 0.00079 2.7E-08 57.3 3.4 28 107-134 3-30 (213)
281 1ko7_A HPR kinase/phosphatase; 96.7 0.0012 4E-08 60.9 4.6 34 96-130 133-166 (314)
282 1xjc_A MOBB protein homolog; s 96.7 0.00059 2E-08 57.3 2.3 26 109-134 5-30 (169)
283 1nn5_A Similar to deoxythymidy 96.7 0.00091 3.1E-08 57.1 3.5 28 105-132 6-33 (215)
284 3k53_A Ferrous iron transport 96.7 0.0008 2.7E-08 60.3 3.2 45 244-290 144-189 (271)
285 4fcw_A Chaperone protein CLPB; 96.7 0.00066 2.2E-08 61.6 2.6 32 108-139 47-78 (311)
286 1tev_A UMP-CMP kinase; ploop, 96.7 0.00097 3.3E-08 55.8 3.3 24 108-131 3-26 (196)
287 1nks_A Adenylate kinase; therm 96.6 0.00095 3.3E-08 55.8 3.2 24 110-133 3-26 (194)
288 2qp9_X Vacuolar protein sortin 96.6 0.0062 2.1E-07 56.8 9.0 27 106-132 82-108 (355)
289 3ake_A Cytidylate kinase; CMP 96.6 0.001 3.5E-08 56.5 3.2 23 110-132 4-26 (208)
290 2z0h_A DTMP kinase, thymidylat 96.6 0.0012 4.1E-08 55.5 3.2 23 110-132 2-24 (197)
291 2bwj_A Adenylate kinase 5; pho 96.5 0.00098 3.4E-08 56.2 2.6 28 105-132 9-36 (199)
292 2vli_A Antibiotic resistance p 96.5 0.00092 3.2E-08 55.6 2.4 26 107-132 4-29 (183)
293 2ged_A SR-beta, signal recogni 96.5 0.0013 4.4E-08 55.0 3.2 24 109-132 49-72 (193)
294 1aky_A Adenylate kinase; ATP:A 96.5 0.0015 5.2E-08 56.3 3.7 26 107-132 3-28 (220)
295 1z2a_A RAS-related protein RAB 96.5 0.0015 5E-08 52.9 3.2 22 110-131 7-28 (168)
296 3fb4_A Adenylate kinase; psych 96.5 0.0015 5.1E-08 56.1 3.2 22 110-131 2-23 (216)
297 1zd8_A GTP:AMP phosphotransfer 96.4 0.0016 5.5E-08 56.6 3.4 27 106-132 5-31 (227)
298 3q72_A GTP-binding protein RAD 96.4 0.0014 4.7E-08 53.2 2.8 23 110-132 4-26 (166)
299 2w58_A DNAI, primosome compone 96.4 0.0016 5.3E-08 55.3 3.2 26 109-134 55-80 (202)
300 2ce2_X GTPase HRAS; signaling 96.4 0.0016 5.3E-08 52.4 3.1 22 110-131 5-26 (166)
301 2dyk_A GTP-binding protein; GT 96.4 0.0017 5.7E-08 52.3 3.2 23 110-132 3-25 (161)
302 2nzj_A GTP-binding protein REM 96.4 0.0017 5.9E-08 53.0 3.3 23 110-132 6-28 (175)
303 2erx_A GTP-binding protein DI- 96.4 0.0018 6E-08 52.6 3.3 22 110-131 5-26 (172)
304 1kao_A RAP2A; GTP-binding prot 96.4 0.0017 5.9E-08 52.3 3.2 22 110-131 5-26 (167)
305 3cbq_A GTP-binding protein REM 96.4 0.0013 4.4E-08 55.7 2.5 22 110-131 25-46 (195)
306 1zuh_A Shikimate kinase; alpha 96.4 0.0018 6.3E-08 53.2 3.4 23 109-131 8-30 (168)
307 2cdn_A Adenylate kinase; phosp 96.4 0.002 7E-08 54.7 3.7 26 107-132 19-44 (201)
308 1e6c_A Shikimate kinase; phosp 96.4 0.0015 5.1E-08 53.8 2.7 24 109-132 3-26 (173)
309 3q85_A GTP-binding protein REM 96.4 0.0019 6.4E-08 52.5 3.3 23 110-132 4-26 (169)
310 1u8z_A RAS-related protein RAL 96.4 0.0018 6.2E-08 52.2 3.2 22 110-131 6-27 (168)
311 3b1v_A Ferrous iron uptake tra 96.4 0.0017 6E-08 58.5 3.3 23 110-132 5-27 (272)
312 2pbr_A DTMP kinase, thymidylat 96.4 0.0018 6.2E-08 54.2 3.2 23 110-132 2-24 (195)
313 3dl0_A Adenylate kinase; phosp 96.4 0.0018 6.1E-08 55.6 3.2 23 110-132 2-24 (216)
314 2pt5_A Shikimate kinase, SK; a 96.4 0.0019 6.5E-08 52.9 3.3 23 110-132 2-24 (168)
315 1z0j_A RAB-22, RAS-related pro 96.4 0.0019 6.5E-08 52.3 3.2 23 110-132 8-30 (170)
316 1z08_A RAS-related protein RAB 96.4 0.0019 6.5E-08 52.4 3.2 22 110-131 8-29 (170)
317 1g16_A RAS-related protein SEC 96.3 0.0019 6.4E-08 52.4 3.1 23 110-132 5-27 (170)
318 1ky3_A GTP-binding protein YPT 96.3 0.002 6.8E-08 52.9 3.2 23 110-132 10-32 (182)
319 1zak_A Adenylate kinase; ATP:A 96.3 0.0017 5.7E-08 56.2 2.9 26 107-132 4-29 (222)
320 3lxw_A GTPase IMAP family memb 96.3 0.0019 6.5E-08 57.2 3.3 24 110-133 23-46 (247)
321 1ek0_A Protein (GTP-binding pr 96.3 0.002 6.8E-08 52.1 3.2 23 110-132 5-27 (170)
322 2lkc_A Translation initiation 96.3 0.0024 8.4E-08 52.3 3.8 25 107-131 7-31 (178)
323 1c1y_A RAS-related protein RAP 96.3 0.002 6.9E-08 52.0 3.2 22 110-131 5-26 (167)
324 1svi_A GTP-binding protein YSX 96.3 0.0019 6.3E-08 54.0 3.0 23 109-131 24-46 (195)
325 1qf9_A UMP/CMP kinase, protein 96.3 0.002 6.8E-08 53.8 3.1 25 108-132 6-30 (194)
326 2iyv_A Shikimate kinase, SK; t 96.3 0.0017 5.8E-08 54.2 2.7 24 109-132 3-26 (184)
327 1wms_A RAB-9, RAB9, RAS-relate 96.3 0.0021 7.2E-08 52.6 3.2 22 110-131 9-30 (177)
328 2fn4_A P23, RAS-related protei 96.3 0.002 7E-08 52.7 3.1 22 110-131 11-32 (181)
329 3pqc_A Probable GTP-binding pr 96.3 0.0019 6.6E-08 53.7 3.0 23 110-132 25-47 (195)
330 1ukz_A Uridylate kinase; trans 96.3 0.0021 7E-08 54.6 3.2 25 108-132 15-39 (203)
331 3tw8_B RAS-related protein RAB 96.3 0.0019 6.5E-08 52.9 2.9 22 110-131 11-32 (181)
332 1ypw_A Transitional endoplasmi 96.3 0.00017 5.9E-09 74.8 -4.6 45 101-147 504-548 (806)
333 2grj_A Dephospho-COA kinase; T 96.2 0.0023 7.9E-08 54.6 3.2 23 109-131 13-35 (192)
334 1uj2_A Uridine-cytidine kinase 96.2 0.0023 7.7E-08 56.7 3.2 24 109-132 23-46 (252)
335 2cxx_A Probable GTP-binding pr 96.2 0.0022 7.4E-08 53.2 2.9 23 110-132 3-25 (190)
336 2qmh_A HPR kinase/phosphorylas 96.2 0.0037 1.3E-07 53.8 4.4 35 96-131 23-57 (205)
337 1r2q_A RAS-related protein RAB 96.2 0.0025 8.4E-08 51.6 3.2 22 110-131 8-29 (170)
338 3t1o_A Gliding protein MGLA; G 96.2 0.0026 8.8E-08 52.9 3.4 24 110-133 16-39 (198)
339 3a4m_A L-seryl-tRNA(SEC) kinas 96.2 0.0025 8.5E-08 56.8 3.4 25 107-131 3-27 (260)
340 3clv_A RAB5 protein, putative; 96.2 0.0025 8.4E-08 53.1 3.2 23 110-132 9-31 (208)
341 4dsu_A GTPase KRAS, isoform 2B 96.2 0.0025 8.6E-08 52.6 3.2 23 110-132 6-28 (189)
342 1upt_A ARL1, ADP-ribosylation 96.2 0.0026 8.9E-08 51.7 3.2 22 109-130 8-29 (171)
343 3bc1_A RAS-related protein RAB 96.2 0.0026 8.8E-08 52.7 3.2 22 110-131 13-34 (195)
344 2oil_A CATX-8, RAS-related pro 96.2 0.0026 8.8E-08 53.2 3.2 22 110-131 27-48 (193)
345 2hxs_A RAB-26, RAS-related pro 96.2 0.0029 9.9E-08 51.8 3.4 22 110-131 8-29 (178)
346 1moz_A ARL1, ADP-ribosylation 96.2 0.0016 5.5E-08 53.8 1.8 23 108-130 18-40 (183)
347 1r8s_A ADP-ribosylation factor 96.2 0.0028 9.4E-08 51.2 3.2 21 110-130 2-22 (164)
348 2y8e_A RAB-protein 6, GH09086P 96.1 0.0027 9.2E-08 51.9 3.1 22 110-131 16-37 (179)
349 1wf3_A GTP-binding protein; GT 96.1 0.0027 9.1E-08 58.1 3.3 25 106-131 6-30 (301)
350 3tlx_A Adenylate kinase 2; str 96.1 0.0028 9.7E-08 55.9 3.3 25 107-131 28-52 (243)
351 1a7j_A Phosphoribulokinase; tr 96.1 0.0013 4.5E-08 59.8 1.1 26 107-132 4-29 (290)
352 3t5d_A Septin-7; GTP-binding p 96.1 0.0024 8.3E-08 57.3 2.8 23 110-132 10-32 (274)
353 2g6b_A RAS-related protein RAB 96.1 0.003 1E-07 51.8 3.2 23 110-132 12-34 (180)
354 2a9k_A RAS-related protein RAL 96.1 0.003 1E-07 52.0 3.2 22 110-131 20-41 (187)
355 1z0f_A RAB14, member RAS oncog 96.1 0.003 1E-07 51.6 3.2 23 110-132 17-39 (179)
356 3con_A GTPase NRAS; structural 96.1 0.003 1E-07 52.5 3.2 22 110-131 23-44 (190)
357 2f6r_A COA synthase, bifunctio 96.1 0.0029 9.9E-08 57.2 3.2 23 108-130 75-97 (281)
358 1sky_E F1-ATPase, F1-ATP synth 96.1 0.0017 5.9E-08 63.0 1.7 45 96-141 140-184 (473)
359 3euj_A Chromosome partition pr 96.1 0.0095 3.3E-07 58.0 6.9 70 216-293 378-464 (483)
360 2efe_B Small GTP-binding prote 96.1 0.0033 1.1E-07 51.6 3.2 23 110-132 14-36 (181)
361 3vfd_A Spastin; ATPase, microt 96.1 0.031 1.1E-06 52.5 10.4 25 107-131 147-171 (389)
362 2xb4_A Adenylate kinase; ATP-b 96.1 0.0032 1.1E-07 54.6 3.3 23 110-132 2-24 (223)
363 2bme_A RAB4A, RAS-related prot 96.0 0.0032 1.1E-07 52.0 3.1 23 110-132 12-34 (186)
364 1q57_A DNA primase/helicase; d 96.0 0.081 2.8E-06 51.5 13.6 34 97-130 231-264 (503)
365 3tqf_A HPR(Ser) kinase; transf 96.0 0.0049 1.7E-07 51.9 4.1 34 96-130 5-38 (181)
366 3iby_A Ferrous iron transport 96.0 0.0032 1.1E-07 56.2 3.2 23 110-132 3-25 (256)
367 1jbk_A CLPB protein; beta barr 96.0 0.0039 1.3E-07 51.3 3.5 27 107-133 42-68 (195)
368 2xtp_A GTPase IMAP family memb 96.0 0.0033 1.1E-07 55.6 3.2 23 110-132 24-46 (260)
369 3iev_A GTP-binding protein ERA 96.0 0.0033 1.1E-07 57.6 3.3 22 110-131 12-33 (308)
370 1nrj_B SR-beta, signal recogni 96.0 0.0033 1.1E-07 53.6 3.2 23 110-132 14-36 (218)
371 1vg8_A RAS-related protein RAB 96.0 0.0036 1.2E-07 52.7 3.2 23 110-132 10-32 (207)
372 4dhe_A Probable GTP-binding pr 96.0 0.0022 7.5E-08 54.9 1.9 24 109-132 30-53 (223)
373 1m7b_A RND3/RHOE small GTP-bin 96.0 0.0035 1.2E-07 52.1 3.1 22 110-131 9-30 (184)
374 2dby_A GTP-binding protein; GD 96.0 0.0031 1.1E-07 59.4 3.0 22 110-131 3-24 (368)
375 2bov_A RAla, RAS-related prote 96.0 0.0037 1.3E-07 52.6 3.2 22 110-131 16-37 (206)
376 2fg5_A RAB-22B, RAS-related pr 96.0 0.0036 1.2E-07 52.4 3.1 23 110-132 25-47 (192)
377 3kkq_A RAS-related protein M-R 96.0 0.0037 1.3E-07 51.5 3.2 22 110-131 20-41 (183)
378 2gf9_A RAS-related protein RAB 96.0 0.0037 1.3E-07 52.1 3.2 23 110-132 24-46 (189)
379 3tkl_A RAS-related protein RAB 96.0 0.0038 1.3E-07 52.0 3.2 23 110-132 18-40 (196)
380 2gf0_A GTP-binding protein DI- 96.0 0.0037 1.3E-07 52.2 3.1 22 110-131 10-31 (199)
381 1e4v_A Adenylate kinase; trans 96.0 0.0037 1.3E-07 53.7 3.1 23 110-132 2-24 (214)
382 3be4_A Adenylate kinase; malar 96.0 0.0039 1.3E-07 53.8 3.3 26 107-132 4-29 (217)
383 1ksh_A ARF-like protein 2; sma 95.9 0.0037 1.3E-07 51.8 3.0 24 108-131 18-41 (186)
384 1mh1_A RAC1; GTP-binding, GTPa 95.9 0.0041 1.4E-07 51.2 3.2 22 110-131 7-28 (186)
385 1z06_A RAS-related protein RAB 95.9 0.0042 1.4E-07 51.7 3.2 22 110-131 22-43 (189)
386 3oes_A GTPase rhebl1; small GT 95.9 0.004 1.4E-07 52.6 3.1 23 110-132 26-48 (201)
387 3cmu_A Protein RECA, recombina 95.9 0.04 1.4E-06 62.0 11.7 29 105-133 380-408 (2050)
388 2cjw_A GTP-binding protein GEM 95.9 0.0041 1.4E-07 52.4 3.2 22 110-131 8-29 (192)
389 3t5g_A GTP-binding protein RHE 95.9 0.0041 1.4E-07 51.2 3.1 21 110-130 8-28 (181)
390 3dz8_A RAS-related protein RAB 95.9 0.0041 1.4E-07 51.9 3.1 23 110-132 25-47 (191)
391 1zbd_A Rabphilin-3A; G protein 95.9 0.0045 1.5E-07 52.1 3.3 23 110-132 10-32 (203)
392 2wsm_A Hydrogenase expression/ 95.9 0.0041 1.4E-07 53.2 3.1 24 109-132 31-54 (221)
393 3i8s_A Ferrous iron transport 95.9 0.0043 1.5E-07 55.8 3.2 23 110-132 5-27 (274)
394 2a5j_A RAS-related protein RAB 95.9 0.0045 1.5E-07 51.7 3.2 22 110-131 23-44 (191)
395 3cnl_A YLQF, putative uncharac 95.8 0.0049 1.7E-07 55.2 3.5 30 109-138 100-129 (262)
396 1zj6_A ADP-ribosylation factor 95.8 0.0047 1.6E-07 51.4 3.2 22 109-130 17-38 (187)
397 3a1s_A Iron(II) transport prot 95.8 0.0046 1.6E-07 55.1 3.3 23 110-132 7-29 (258)
398 2ew1_A RAS-related protein RAB 95.8 0.0044 1.5E-07 52.7 3.1 22 110-131 28-49 (201)
399 2il1_A RAB12; G-protein, GDP, 95.8 0.0042 1.4E-07 52.1 2.9 22 110-131 28-49 (192)
400 2o52_A RAS-related protein RAB 95.8 0.0047 1.6E-07 52.2 3.2 22 110-131 27-48 (200)
401 2h57_A ADP-ribosylation factor 95.8 0.0035 1.2E-07 52.3 2.3 23 110-132 23-45 (190)
402 1jwy_B Dynamin A GTPase domain 95.8 0.0046 1.6E-07 56.2 3.2 23 110-132 26-48 (315)
403 3reg_A RHO-like small GTPase; 95.8 0.0049 1.7E-07 51.6 3.2 23 110-132 25-47 (194)
404 2qu8_A Putative nucleolar GTP- 95.8 0.0046 1.6E-07 53.5 3.0 22 110-131 31-52 (228)
405 2bcg_Y Protein YP2, GTP-bindin 95.8 0.0047 1.6E-07 52.2 3.1 22 110-131 10-31 (206)
406 1zd9_A ADP-ribosylation factor 95.8 0.005 1.7E-07 51.3 3.2 22 110-131 24-45 (188)
407 3d3q_A TRNA delta(2)-isopenten 95.8 0.0047 1.6E-07 57.5 3.2 25 109-133 8-32 (340)
408 2atv_A RERG, RAS-like estrogen 95.8 0.0051 1.7E-07 51.6 3.2 22 110-131 30-51 (196)
409 1ltq_A Polynucleotide kinase; 95.8 0.0048 1.7E-07 55.7 3.3 22 109-130 3-24 (301)
410 2h17_A ADP-ribosylation factor 95.8 0.0043 1.5E-07 51.3 2.7 22 110-131 23-44 (181)
411 1ak2_A Adenylate kinase isoenz 95.8 0.0058 2E-07 53.3 3.6 26 107-132 15-40 (233)
412 1x3s_A RAS-related protein RAB 95.8 0.0051 1.7E-07 51.1 3.2 22 110-131 17-38 (195)
413 3n70_A Transport activator; si 95.8 0.0054 1.9E-07 49.4 3.2 29 106-134 22-50 (145)
414 3v9p_A DTMP kinase, thymidylat 95.8 0.0042 1.4E-07 54.5 2.7 28 106-133 23-50 (227)
415 4bas_A ADP-ribosylation factor 95.8 0.0047 1.6E-07 51.6 2.9 22 110-131 19-40 (199)
416 2p5s_A RAS and EF-hand domain 95.8 0.0051 1.8E-07 51.8 3.2 23 110-132 30-52 (199)
417 3cph_A RAS-related protein SEC 95.7 0.0052 1.8E-07 52.0 3.2 23 109-131 21-43 (213)
418 4edh_A DTMP kinase, thymidylat 95.7 0.0055 1.9E-07 53.1 3.4 29 106-134 4-32 (213)
419 2fv8_A H6, RHO-related GTP-bin 95.7 0.0051 1.8E-07 52.2 3.1 23 110-132 27-49 (207)
420 2iwr_A Centaurin gamma 1; ANK 95.7 0.0042 1.4E-07 51.0 2.5 22 110-131 9-30 (178)
421 2p65_A Hypothetical protein PF 95.7 0.0048 1.6E-07 50.7 2.8 28 107-134 42-69 (187)
422 3a8t_A Adenylate isopentenyltr 95.7 0.0062 2.1E-07 56.6 3.8 26 107-132 39-64 (339)
423 3bwd_D RAC-like GTP-binding pr 95.7 0.0064 2.2E-07 49.9 3.5 23 109-131 9-31 (182)
424 3lv8_A DTMP kinase, thymidylat 95.7 0.0061 2.1E-07 53.8 3.5 27 107-133 26-52 (236)
425 2f7s_A C25KG, RAS-related prot 95.7 0.0058 2E-07 52.0 3.3 22 110-131 27-48 (217)
426 2h92_A Cytidylate kinase; ross 95.7 0.0043 1.5E-07 53.3 2.4 25 108-132 3-27 (219)
427 3llu_A RAS-related GTP-binding 95.7 0.006 2.1E-07 51.3 3.3 24 110-133 22-45 (196)
428 1gwn_A RHO-related GTP-binding 95.7 0.0054 1.8E-07 52.3 3.1 22 110-131 30-51 (205)
429 3c5c_A RAS-like protein 12; GD 95.7 0.0059 2E-07 51.0 3.2 22 110-131 23-44 (187)
430 3zvl_A Bifunctional polynucleo 95.7 0.0056 1.9E-07 58.5 3.4 26 106-131 256-281 (416)
431 2j1l_A RHO-related GTP-binding 95.7 0.0059 2E-07 52.2 3.2 22 110-131 36-57 (214)
432 2q3h_A RAS homolog gene family 95.7 0.0061 2.1E-07 51.2 3.3 23 109-131 21-43 (201)
433 3def_A T7I23.11 protein; chlor 95.7 0.0058 2E-07 54.3 3.2 23 110-132 38-60 (262)
434 2i1q_A DNA repair and recombin 95.6 0.0065 2.2E-07 55.7 3.6 27 104-130 94-120 (322)
435 2fh5_B SR-beta, signal recogni 95.6 0.0061 2.1E-07 51.8 3.2 23 110-132 9-31 (214)
436 3exa_A TRNA delta(2)-isopenten 95.6 0.0064 2.2E-07 56.0 3.4 25 108-132 3-27 (322)
437 2qz4_A Paraplegin; AAA+, SPG7, 95.6 0.0068 2.3E-07 53.2 3.5 26 107-132 38-63 (262)
438 2gco_A H9, RHO-related GTP-bin 95.6 0.0061 2.1E-07 51.4 3.1 22 110-131 27-48 (201)
439 1h65_A Chloroplast outer envel 95.6 0.0061 2.1E-07 54.4 3.2 23 110-132 41-63 (270)
440 4tmk_A Protein (thymidylate ki 95.6 0.0074 2.5E-07 52.4 3.5 27 107-133 2-28 (213)
441 2aka_B Dynamin-1; fusion prote 95.6 0.0057 2E-07 55.0 2.9 23 110-132 28-50 (299)
442 2fu5_C RAS-related protein RAB 95.6 0.0042 1.4E-07 51.2 1.8 22 110-131 10-31 (183)
443 3cmw_A Protein RECA, recombina 95.5 0.061 2.1E-06 59.7 11.3 35 97-131 370-406 (1706)
444 2b6h_A ADP-ribosylation factor 95.5 0.0061 2.1E-07 51.2 2.8 22 109-130 30-51 (192)
445 2atx_A Small GTP binding prote 95.5 0.007 2.4E-07 50.5 3.1 22 110-131 20-41 (194)
446 3tmk_A Thymidylate kinase; pho 95.5 0.008 2.7E-07 52.3 3.5 29 106-134 3-31 (216)
447 3crm_A TRNA delta(2)-isopenten 95.5 0.0068 2.3E-07 56.0 3.3 24 109-132 6-29 (323)
448 2ocp_A DGK, deoxyguanosine kin 95.5 0.0074 2.5E-07 52.8 3.3 26 108-133 2-27 (241)
449 3umf_A Adenylate kinase; rossm 95.5 0.0061 2.1E-07 53.1 2.7 29 104-132 25-53 (217)
450 2zts_A Putative uncharacterize 95.5 0.0099 3.4E-07 51.6 4.0 59 233-293 133-206 (251)
451 3pxi_A Negative regulator of g 95.4 0.031 1.1E-06 57.3 8.3 23 110-132 523-545 (758)
452 2g3y_A GTP-binding protein GEM 95.4 0.0082 2.8E-07 51.8 3.3 22 110-131 39-60 (211)
453 2hf9_A Probable hydrogenase ni 95.4 0.0075 2.6E-07 51.8 3.1 23 110-132 40-62 (226)
454 3ld9_A DTMP kinase, thymidylat 95.4 0.0085 2.9E-07 52.4 3.4 28 106-133 19-46 (223)
455 2r62_A Cell division protease 95.4 0.0019 6.6E-08 57.3 -0.8 32 98-131 36-67 (268)
456 2hup_A RAS-related protein RAB 95.3 0.0087 3E-07 50.6 3.1 22 110-131 31-52 (201)
457 4gzl_A RAS-related C3 botulinu 95.3 0.0089 3E-07 50.7 3.1 21 110-130 32-52 (204)
458 4djt_A GTP-binding nuclear pro 95.3 0.0039 1.3E-07 53.2 0.7 22 110-131 13-34 (218)
459 2x77_A ADP-ribosylation factor 95.3 0.006 2E-07 50.7 1.8 22 109-130 23-44 (189)
460 3cpj_B GTP-binding protein YPT 95.2 0.01 3.4E-07 51.0 3.2 23 110-132 15-37 (223)
461 3foz_A TRNA delta(2)-isopenten 95.2 0.01 3.5E-07 54.5 3.4 25 108-132 10-34 (316)
462 1p5z_B DCK, deoxycytidine kina 95.2 0.006 2E-07 54.2 1.8 28 106-133 22-49 (263)
463 2v3c_C SRP54, signal recogniti 95.2 0.0025 8.4E-08 61.4 -0.9 37 109-145 100-136 (432)
464 3q3j_B RHO-related GTP-binding 95.2 0.01 3.6E-07 50.7 3.2 22 110-131 29-50 (214)
465 2yc2_C IFT27, small RAB-relate 95.2 0.0043 1.5E-07 52.2 0.6 22 110-131 22-43 (208)
466 3dm5_A SRP54, signal recogniti 95.2 0.0095 3.2E-07 57.4 3.1 35 107-141 99-133 (443)
467 2orw_A Thymidine kinase; TMTK, 95.2 0.0094 3.2E-07 50.3 2.7 52 234-293 75-137 (184)
468 2j0v_A RAC-like GTP-binding pr 95.1 0.011 3.9E-07 50.0 3.1 22 110-131 11-32 (212)
469 3sr0_A Adenylate kinase; phosp 95.0 0.013 4.6E-07 50.4 3.2 23 110-132 2-24 (206)
470 3eph_A TRNA isopentenyltransfe 94.9 0.013 4.6E-07 55.6 3.3 24 109-132 3-26 (409)
471 3syl_A Protein CBBX; photosynt 94.9 0.015 5.3E-07 52.3 3.6 27 107-133 66-92 (309)
472 3uk6_A RUVB-like 2; hexameric 94.8 0.014 4.9E-07 54.0 3.3 39 106-144 68-106 (368)
473 2chg_A Replication factor C sm 94.8 0.014 4.9E-07 49.0 3.0 44 234-282 101-144 (226)
474 1puj_A YLQF, conserved hypothe 94.8 0.019 6.5E-07 51.9 3.8 27 109-135 121-147 (282)
475 3p32_A Probable GTPase RV1496/ 94.7 0.015 5.3E-07 54.1 3.0 26 108-133 79-104 (355)
476 1xwi_A SKD1 protein; VPS4B, AA 94.6 0.019 6.4E-07 52.8 3.4 27 106-132 43-69 (322)
477 3gj0_A GTP-binding nuclear pro 94.5 0.013 4.6E-07 50.0 2.1 40 225-264 166-210 (221)
478 4hlc_A DTMP kinase, thymidylat 94.5 0.021 7.1E-07 49.1 3.3 26 108-133 2-27 (205)
479 3r7w_A Gtpase1, GTP-binding pr 94.5 0.021 7E-07 52.1 3.4 24 108-131 3-26 (307)
480 2bjv_A PSP operon transcriptio 94.5 0.029 1E-06 49.5 4.4 28 107-134 28-55 (265)
481 1lw7_A Transcriptional regulat 94.5 0.014 4.7E-07 54.6 2.3 30 216-245 295-329 (365)
482 1wxq_A GTP-binding protein; st 94.5 0.019 6.4E-07 54.6 3.2 23 110-132 2-24 (397)
483 3t15_A Ribulose bisphosphate c 94.5 0.021 7.1E-07 51.7 3.4 26 107-132 35-60 (293)
484 2vhj_A Ntpase P4, P4; non- hyd 94.5 0.021 7.2E-07 52.7 3.4 27 104-130 119-145 (331)
485 2hjg_A GTP-binding protein ENG 94.5 0.016 5.6E-07 55.5 2.8 22 110-131 5-26 (436)
486 3pvs_A Replication-associated 94.5 0.01 3.5E-07 57.3 1.3 36 100-135 40-77 (447)
487 2qgz_A Helicase loader, putati 94.5 0.023 7.8E-07 51.9 3.6 26 108-133 152-177 (308)
488 1d2n_A N-ethylmaleimide-sensit 94.4 0.018 6.3E-07 51.1 2.9 26 106-131 62-87 (272)
489 3ec1_A YQEH GTPase; atnos1, at 94.4 0.019 6.4E-07 54.0 3.0 25 107-131 161-185 (369)
490 3th5_A RAS-related C3 botulinu 93.4 0.007 2.4E-07 51.0 0.0 21 110-130 32-52 (204)
491 1ofh_A ATP-dependent HSL prote 94.4 0.021 7.2E-07 51.2 3.1 25 108-132 50-74 (310)
492 3hws_A ATP-dependent CLP prote 94.3 0.021 7.2E-07 53.1 3.1 25 108-132 51-75 (363)
493 1knx_A Probable HPR(Ser) kinas 94.3 0.036 1.2E-06 50.9 4.5 34 96-130 136-169 (312)
494 2x2e_A Dynamin-1; nitration, h 94.3 0.014 4.9E-07 54.2 1.8 23 110-132 33-55 (353)
495 3eie_A Vacuolar protein sortin 94.3 0.026 8.8E-07 51.7 3.5 25 107-131 50-74 (322)
496 3gmt_A Adenylate kinase; ssgci 94.2 0.026 8.8E-07 49.6 3.3 24 109-132 9-32 (230)
497 2ck3_D ATP synthase subunit be 94.2 0.029 9.8E-07 54.4 3.8 30 103-132 148-177 (482)
498 3geh_A MNME, tRNA modification 94.2 0.016 5.3E-07 56.3 2.0 26 106-131 222-247 (462)
499 3l0o_A Transcription terminati 94.2 0.026 8.9E-07 53.4 3.4 33 100-132 167-199 (427)
500 3h2y_A GTPase family protein; 94.2 0.02 6.8E-07 53.8 2.6 26 107-132 159-184 (368)
No 1
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.2e-66 Score=525.42 Aligned_cols=315 Identities=30% Similarity=0.539 Sum_probs=281.8
Q ss_pred EeeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEE
Q 020527 2 AVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQ 81 (325)
Q Consensus 2 ~~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 81 (325)
++|+|++++..|.+|+|.++++..|...+..|+..+...+..+.++..+++|+.++++.+++..........++..+.|+
T Consensus 264 vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~ 343 (587)
T 3qf4_A 264 VLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADNALALPNVEGSVS 343 (587)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCTTCBCCSCCCCCEE
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCccccCCCCCcEE
Confidence 35678999999999999999999999999999999999999999999999999999998765332211111122234699
Q ss_pred EEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 020527 82 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 161 (325)
Q Consensus 82 ~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v 161 (325)
++||+|+|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+...+|++|+||
T Consensus 344 ~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v 422 (587)
T 3qf4_A 344 FENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAV 422 (587)
T ss_dssp EEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEE
T ss_pred EEEEEEEcCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEE
Confidence 99999999753 35799999999999999999999999999999999999999999999999999988888899999999
Q ss_pred ccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEE
Q 020527 162 GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAIL 239 (325)
Q Consensus 162 ~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~ll 239 (325)
||++.+|++||+||+.++.+ ...++++.++++.+++.++++.+|.|+++.++. .+||||||||++|||||+++|++|
T Consensus 423 ~Q~~~lf~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~il 501 (587)
T 3qf4_A 423 PQETVLFSGTIKENLKWGRE-DATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVL 501 (587)
T ss_dssp CSSCCCCSEEHHHHHTTTCS-SCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEE
T ss_pred CCCCcCcCccHHHHHhccCC-CCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999843 456777888999999999999999999988764 689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHHH
Q 020527 240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKR 319 (325)
Q Consensus 240 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 319 (325)
|||||||+||+.+++.+.+.++++. +|+|+|+||||++.+..||||++|++|++++.|++++++++++.|++++..
T Consensus 502 llDEpts~LD~~~~~~i~~~l~~~~----~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~ 577 (587)
T 3qf4_A 502 ILDDCTSSVDPITEKRILDGLKRYT----KGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCKPYREIYES 577 (587)
T ss_dssp EEESCCTTSCHHHHHHHHHHHHHHS----TTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHHCHHHHHHHHH
T ss_pred EEECCcccCCHHHHHHHHHHHHHhC----CCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHH
Confidence 9999999999999999999999873 478999999999999889999999999999999999999999999999987
Q ss_pred hhh
Q 020527 320 QTE 322 (325)
Q Consensus 320 ~~~ 322 (325)
|..
T Consensus 578 ~~~ 580 (587)
T 3qf4_A 578 QFG 580 (587)
T ss_dssp HC-
T ss_pred Hhc
Confidence 753
No 2
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=5.3e-67 Score=527.47 Aligned_cols=313 Identities=42% Similarity=0.641 Sum_probs=281.3
Q ss_pred EeeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEE
Q 020527 2 AVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQ 81 (325)
Q Consensus 2 ~~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 81 (325)
++++|++++..|.+|+|.++++..|...+..|+..+...+..+.++..+++|+.++++.+++........+.+...+.|+
T Consensus 262 v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~ 341 (578)
T 4a82_A 262 VIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRID 341 (578)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCCTTCCCCCCCSCCEE
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCccccCCCCCeEE
Confidence 35679999999999999999999999999999999999999999999999999999998765432111111122234699
Q ss_pred EEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 020527 82 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 161 (325)
Q Consensus 82 ~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v 161 (325)
++||+|+|++. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+...+|++||||
T Consensus 342 ~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v 420 (578)
T 4a82_A 342 IDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLV 420 (578)
T ss_dssp EEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEE
T ss_pred EEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEE
Confidence 99999999753 34799999999999999999999999999999999999999999999999999988888899999999
Q ss_pred ccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEE
Q 020527 162 GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAIL 239 (325)
Q Consensus 162 ~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~ll 239 (325)
||+|.+|+.||+||+.++.+ ...++++.++++.+++.++++.+|.|+++.++. .+||||||||++|||||+++|+++
T Consensus 421 ~Q~~~l~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~il 499 (578)
T 4a82_A 421 QQDNILFSDTVKENILLGRP-TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPIL 499 (578)
T ss_dssp CSSCCCCSSBHHHHHGGGCS-SCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEE
T ss_pred eCCCccCcccHHHHHhcCCC-CCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999853 455777888999999999999999999998874 689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHHH
Q 020527 240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKR 319 (325)
Q Consensus 240 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 319 (325)
|||||||+||+.+++.+.+.++++. +++|+|+||||++.+..||||++|++|++++.|++++++++++.|+++++.
T Consensus 500 llDEpts~LD~~~~~~i~~~l~~~~----~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~~~~ 575 (578)
T 4a82_A 500 ILDEATSALDLESESIIQEALDVLS----KDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYSI 575 (578)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHT----TTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHHHHHHTT
T ss_pred EEECccccCCHHHHHHHHHHHHHHc----CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHh
Confidence 9999999999999999999999884 367999999999999889999999999999999999999988899999876
Q ss_pred h
Q 020527 320 Q 320 (325)
Q Consensus 320 ~ 320 (325)
|
T Consensus 576 q 576 (578)
T 4a82_A 576 Q 576 (578)
T ss_dssp T
T ss_pred h
Confidence 5
No 3
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1.2e-65 Score=518.12 Aligned_cols=313 Identities=38% Similarity=0.596 Sum_probs=280.3
Q ss_pred EeeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEE
Q 020527 2 AVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQ 81 (325)
Q Consensus 2 ~~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 81 (325)
++++|+|++..|.+|+|.++++..+...+..|+..+...+..++++..+++|+.++++.+++.... ..+.++..+.|+
T Consensus 266 i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~--~~~~~~~~~~i~ 343 (582)
T 3b5x_A 266 VLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNG--KYEAERVNGEVD 343 (582)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCC--CCCCCCCCCeEE
Confidence 356789999999999999999999999999999999999999999999999999999876653211 111111234699
Q ss_pred EEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 020527 82 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 161 (325)
Q Consensus 82 ~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v 161 (325)
++||+|+|+++ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+||+++.+.+...+|++|+||
T Consensus 344 ~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v 422 (582)
T 3b5x_A 344 VKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALV 422 (582)
T ss_pred EEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEE
Confidence 99999999742 24699999999999999999999999999999999999999999999999999888888889999999
Q ss_pred ccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEE
Q 020527 162 GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAIL 239 (325)
Q Consensus 162 ~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~ll 239 (325)
||+|.+|+.||+||+.++......++++.++++.++++++++++|.|+++.++. .+||||||||++|||||+++|++|
T Consensus 423 ~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~il 502 (582)
T 3b5x_A 423 SQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVL 502 (582)
T ss_pred cCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999999999999997422355677889999999999999999999998874 689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHHH
Q 020527 240 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKR 319 (325)
Q Consensus 240 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 319 (325)
|||||||+||+.+++.+.+.++++. +|+|+|+||||++.+..||+|++|++|++++.|++++++++++.|+++++.
T Consensus 503 llDEpts~LD~~~~~~i~~~l~~~~----~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 578 (582)
T 3b5x_A 503 ILDEATSALDTESERAIQAALDELQ----KNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQLHRI 578 (582)
T ss_pred EEECccccCCHHHHHHHHHHHHHHc----CCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHH
Confidence 9999999999999999999999884 378999999999998889999999999999999999999988899999987
Q ss_pred hh
Q 020527 320 QT 321 (325)
Q Consensus 320 ~~ 321 (325)
|.
T Consensus 579 q~ 580 (582)
T 3b5x_A 579 QF 580 (582)
T ss_pred hh
Confidence 74
No 4
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.1e-65 Score=558.04 Aligned_cols=315 Identities=42% Similarity=0.612 Sum_probs=288.7
Q ss_pred EeeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccc-cccccCCcccE
Q 020527 2 AVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSE-GVKLQRLMGHV 80 (325)
Q Consensus 2 ~~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~i 80 (325)
++|+|++++..|.+|+|.+++++.++..+..|+..+...+..++++..+++|+.++++.+|+...... ........+.|
T Consensus 337 ~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I 416 (1321)
T 4f4c_A 337 AFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDI 416 (1321)
T ss_dssp HHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCE
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccccCCCCCCcE
Confidence 35789999999999999999999999999999999999999999999999999999998776432221 11122234579
Q ss_pred EEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 020527 81 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 160 (325)
Q Consensus 81 ~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~ 160 (325)
+++||+|+|+++++.++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.+++..++|++|||
T Consensus 417 ~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~ 496 (1321)
T 4f4c_A 417 TVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAV 496 (1321)
T ss_dssp EEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEE
T ss_pred EEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccc
Confidence 99999999986555689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCE
Q 020527 161 VGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAI 238 (325)
Q Consensus 161 v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~l 238 (325)
|+|+|.+|++||+|||.||. +..+++++.++++.++++++++.+|.|++|.+++ .+||||||||++||||++++|+|
T Consensus 497 v~Q~~~Lf~~TI~eNI~~g~-~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~I 575 (1321)
T 4f4c_A 497 VSQEPALFNCTIEENISLGK-EGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKI 575 (1321)
T ss_dssp ECSSCCCCSEEHHHHHHTTC-TTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSE
T ss_pred cCCcceeeCCchhHHHhhhc-ccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCE
Confidence 99999999999999999995 3567889999999999999999999999999985 58999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHH
Q 020527 239 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVK 318 (325)
Q Consensus 239 lllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 318 (325)
||||||||+||+++++.+.+.|.++. +|+|+|+|||+++.++.||+|++|++|+|++.|+|++++++++.|+++++
T Consensus 576 liLDE~tSaLD~~te~~i~~~l~~~~----~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL~~~~g~y~~l~~ 651 (1321)
T 4f4c_A 576 LLLDEATSALDAESEGIVQQALDKAA----KGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQGLYYDLVT 651 (1321)
T ss_dssp EEEESTTTTSCTTTHHHHHHHHHHHH----TTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHHHHTTTCHHHHHHH
T ss_pred EEEecccccCCHHHHHHHHHHHHHHh----CCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHHHHhhhHHHHHHH
Confidence 99999999999999999999999886 37899999999999999999999999999999999999999999999998
Q ss_pred Hhh
Q 020527 319 RQT 321 (325)
Q Consensus 319 ~~~ 321 (325)
.|.
T Consensus 652 ~q~ 654 (1321)
T 4f4c_A 652 AQT 654 (1321)
T ss_dssp HHH
T ss_pred hhh
Confidence 763
No 5
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.4e-65 Score=518.86 Aligned_cols=315 Identities=43% Similarity=0.712 Sum_probs=267.1
Q ss_pred eeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCccc-EE
Q 020527 3 VLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGH-VQ 81 (325)
Q Consensus 3 ~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-i~ 81 (325)
+++|++++..|.+|+|.++++..+...+..|+..+...+..++++..+++|+.++++.+++..............+. |+
T Consensus 264 ~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 343 (595)
T 2yl4_A 264 LYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALE 343 (595)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCSSCSBCCCTTTCCCCEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCCCCCcCCCCCeEE
Confidence 56789999999999999999999999999999999999999999999999999999887653221111111112346 99
Q ss_pred EEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 020527 82 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 161 (325)
Q Consensus 82 ~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v 161 (325)
++||+|+|+++.+.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+...+|++|+||
T Consensus 344 ~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v 423 (595)
T 2yl4_A 344 FKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTV 423 (595)
T ss_dssp EEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEE
T ss_pred EEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEE
Confidence 99999999753224699999999999999999999999999999999999999999999999999888888889999999
Q ss_pred ccCCcCccccHHHHHhcCCCC--CCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCCC
Q 020527 162 GQEPQLLQMDIKSNIMYGCPK--DVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPA 237 (325)
Q Consensus 162 ~Q~~~l~~~tv~enl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p~ 237 (325)
||++.+|+.||+||+.++.+. ...++++.++++.++++++++++|.++++.++ +.+||||||||++|||||+++|+
T Consensus 424 ~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~ 503 (595)
T 2yl4_A 424 SQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPK 503 (595)
T ss_dssp CSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCS
T ss_pred ccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCC
Confidence 999999999999999997532 14577888999999999999999999998876 36899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhc-CHHHHHH
Q 020527 238 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK-GRLYAKL 316 (325)
Q Consensus 238 llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~~~~~ 316 (325)
+||||||||+||+.+++.+.+.++++.+ ++|+|+||||++.+..||+|++|++|++++.|++++++++ ++.|+++
T Consensus 504 illlDEpts~LD~~~~~~i~~~l~~~~~----~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 579 (595)
T 2yl4_A 504 ILLLDEATSALDAENEYLVQEALDRLMD----GRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKL 579 (595)
T ss_dssp EEEEECCCSSCCHHHHHHHHHHHHHHHT----TSEEEEECCCHHHHHHSSEEEEEETTEEEEEECSCC------C-----
T ss_pred EEEEECcccCCCHHHHHHHHHHHHHHhc----CCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCChHHHHH
Confidence 9999999999999999999999999853 6799999999999888999999999999999999999874 7788888
Q ss_pred HHHhh
Q 020527 317 VKRQT 321 (325)
Q Consensus 317 ~~~~~ 321 (325)
++.|.
T Consensus 580 ~~~q~ 584 (595)
T 2yl4_A 580 MNKQS 584 (595)
T ss_dssp -----
T ss_pred HHHhh
Confidence 87664
No 6
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.5e-65 Score=517.41 Aligned_cols=312 Identities=38% Similarity=0.598 Sum_probs=279.7
Q ss_pred eeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEEE
Q 020527 3 VLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQF 82 (325)
Q Consensus 3 ~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 82 (325)
+++|++++..|.+|+|.++++..+...+..|+..+...+..+..+..+++|+.++++.+++.... ..+.++..+.|++
T Consensus 267 ~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~--~~~~~~~~~~i~~ 344 (582)
T 3b60_A 267 LYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEG--KRVIDRATGDLEF 344 (582)
T ss_dssp HHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCCC--CBCCSCCCCCEEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC--CCCCCCCCCcEEE
Confidence 46788999999999999999999999999999999999999999999999999999987653211 1111122346999
Q ss_pred EEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEc
Q 020527 83 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG 162 (325)
Q Consensus 83 ~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~ 162 (325)
+||+|+|+++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+...+|++|+|||
T Consensus 345 ~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 423 (582)
T 3b60_A 345 RNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVS 423 (582)
T ss_dssp EEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEEC
T ss_pred EEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEc
Confidence 9999999742 146999999999999999999999999999999999999999999999999998888888899999999
Q ss_pred cCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEE
Q 020527 163 QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILL 240 (325)
Q Consensus 163 Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~lll 240 (325)
|+|.+|+.||+||+.++......++++.++++.++++++++++|.|+++.++. .+||||||||++|||||+++|++||
T Consensus 424 Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~ill 503 (582)
T 3b60_A 424 QNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILI 503 (582)
T ss_dssp SSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEE
T ss_pred cCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEE
Confidence 99999999999999997423455778889999999999999999999998874 6899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHh
Q 020527 241 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQ 320 (325)
Q Consensus 241 lDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 320 (325)
||||||+||+.+++.+.+.++++. +|+|+|+||||++.++.||+|++|++|++++.|++++++++++.|+++++.|
T Consensus 504 lDEpts~LD~~~~~~i~~~l~~~~----~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~q 579 (582)
T 3b60_A 504 LDEATSALDTESERAIQAALDELQ----KNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHKMQ 579 (582)
T ss_dssp EETTTSSCCHHHHHHHHHHHHHHH----TTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSHHHHHHHT
T ss_pred EECccccCCHHHHHHHHHHHHHHh----CCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHHHHh
Confidence 999999999999999999999985 2789999999999988899999999999999999999998888899999876
Q ss_pred h
Q 020527 321 T 321 (325)
Q Consensus 321 ~ 321 (325)
.
T Consensus 580 ~ 580 (582)
T 3b60_A 580 F 580 (582)
T ss_dssp C
T ss_pred c
Confidence 4
No 7
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.4e-66 Score=523.38 Aligned_cols=312 Identities=35% Similarity=0.610 Sum_probs=281.1
Q ss_pred eeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEEE
Q 020527 3 VLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQF 82 (325)
Q Consensus 3 ~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 82 (325)
+++|+|++..|.+|+|.+++++.|...+..|+..+...+..++.+..+++|+.++++.+++...+ .....++..+.|++
T Consensus 279 ~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~-~~~~~~~~~~~i~~ 357 (598)
T 3qf4_B 279 SGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDP-DAVELREVRGEIEF 357 (598)
T ss_dssp HHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCS-SCCCCCSCCCCEEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-CCCCCCCCCCeEEE
Confidence 56789999999999999999999999999999999999999999999999999999987654221 11111223346999
Q ss_pred EEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEc
Q 020527 83 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG 162 (325)
Q Consensus 83 ~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~ 162 (325)
+||+|+|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+...+|++|+|||
T Consensus 358 ~~v~~~y~~~--~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~ 435 (598)
T 3qf4_B 358 KNVWFSYDKK--KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVL 435 (598)
T ss_dssp EEEECCSSSS--SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEEC
T ss_pred EEEEEECCCC--CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEe
Confidence 9999999753 46999999999999999999999999999999999999999999999999999988888999999999
Q ss_pred cCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEE
Q 020527 163 QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILL 240 (325)
Q Consensus 163 Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~lll 240 (325)
|+|.+|++||+||+.++.+ ...++++.++++.++++++++.+|.|+++.++. .+||||||||++|||||+++|++||
T Consensus 436 Q~~~lf~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~ill 514 (598)
T 3qf4_B 436 QDTILFSTTVKENLKYGNP-GATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILI 514 (598)
T ss_dssp TTCCCCSSBHHHHHHSSST-TCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred CCCccccccHHHHHhcCCC-CCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999999843 345567788888999999999999999988863 6899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHh
Q 020527 241 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQ 320 (325)
Q Consensus 241 lDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 320 (325)
||||||+||+.++..+.+.++++. +|+|+|+||||++.+..||+|++|++|++++.|++++++++++.|++++..|
T Consensus 515 lDEpts~LD~~~~~~i~~~l~~~~----~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 590 (598)
T 3qf4_B 515 LDEATSNVDTKTEKSIQAAMWKLM----EGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYELFTSQ 590 (598)
T ss_dssp ECCCCTTCCHHHHHHHHHHHHHHH----TTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHHTTCHHHHHHHHH
T ss_pred EECCccCCCHHHHHHHHHHHHHHc----CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHH
Confidence 999999999999999999999985 3789999999999998899999999999999999999999999999999887
Q ss_pred hh
Q 020527 321 TE 322 (325)
Q Consensus 321 ~~ 322 (325)
..
T Consensus 591 ~~ 592 (598)
T 3qf4_B 591 YG 592 (598)
T ss_dssp HG
T ss_pred hh
Confidence 54
No 8
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1.3e-65 Score=478.06 Aligned_cols=274 Identities=40% Similarity=0.597 Sum_probs=238.6
Q ss_pred HHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCCh
Q 020527 41 LSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSG 120 (325)
Q Consensus 41 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsG 120 (325)
...++.+..+++|++++++.+++..............+.|+++||+|+|++. .++|+||||+|++||++||+||||||
T Consensus 15 ~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~--~~vL~~isl~i~~Ge~vaivG~sGsG 92 (306)
T 3nh6_A 15 VPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADG--RETLQDVSFTVMPGQTLALVGPSGAG 92 (306)
T ss_dssp ----CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESSTT--CEEEEEEEEEECTTCEEEEESSSCHH
T ss_pred chhHHHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCCC--CceeeeeeEEEcCCCEEEEECCCCch
Confidence 3456678888999999998765432211111111223469999999999643 46999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHH
Q 020527 121 KSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHE 200 (325)
Q Consensus 121 KSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~ 200 (325)
||||+++|+|+++|++|+|.++|+++..++...+|++||||||++.+|++||+|||.++.. ....+++.++++.+++.+
T Consensus 93 KSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~-~~~~~~~~~~~~~~~l~~ 171 (306)
T 3nh6_A 93 KSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRV-TAGNDEVEAAAQAAGIHD 171 (306)
T ss_dssp HHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTST-TCCHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcc-cCCHHHHHHHHHHhCcHH
Confidence 9999999999999999999999999999988889999999999999999999999999853 345677888999999999
Q ss_pred HHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEec
Q 020527 201 FILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH 278 (325)
Q Consensus 201 ~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH 278 (325)
+++.+|.|+++.++. .+|||||||||+|||||+++|+|||||||||+||+.++..+++.|.++.+ ++|+|+|||
T Consensus 172 ~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~----~~Tvi~itH 247 (306)
T 3nh6_A 172 AIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA----NRTTIVVAH 247 (306)
T ss_dssp HHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT----TSEEEEECC
T ss_pred HHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC----CCEEEEEEc
Confidence 999999999988764 68999999999999999999999999999999999999999999999853 679999999
Q ss_pred CchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHhh
Q 020527 279 RLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQT 321 (325)
Q Consensus 279 ~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 321 (325)
|++.+..||+|++|++|+|++.|+++++++..+.|++++..|.
T Consensus 248 ~l~~~~~aD~i~vl~~G~iv~~G~~~el~~~~~~y~~l~~~q~ 290 (306)
T 3nh6_A 248 RLSTVVNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQQ 290 (306)
T ss_dssp SHHHHHTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHHHH
T ss_pred ChHHHHcCCEEEEEECCEEEEECCHHHHHhcChHHHHHHHHHH
Confidence 9999988999999999999999999999999999999998764
No 9
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=3.9e-66 Score=561.48 Aligned_cols=316 Identities=40% Similarity=0.587 Sum_probs=267.7
Q ss_pred eeehHHHHhcCCcCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccE
Q 020527 3 VLLGGMSIMIGQVSPEQLTK--YVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHV 80 (325)
Q Consensus 3 ~~~g~~~v~~g~it~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i 80 (325)
+++|++++..|..+++.+.. ++.+......++..+...+..+..+..+++|+.++++.+++..........++..+.|
T Consensus 998 ~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~g~I 1077 (1321)
T 4f4c_A 998 YRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLSLAGEKKKLYGKV 1077 (1321)
T ss_dssp HHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCTTCCCSBCCCCCCCE
T ss_pred HHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCCccCCCCCCCCCCeE
Confidence 46688888888877665533 3333444445666777888899999999999999999877643322222223445679
Q ss_pred EEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 020527 81 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 160 (325)
Q Consensus 81 ~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~ 160 (325)
+++||+|+|+++++.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+.+++...+|++|+|
T Consensus 1078 ~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~ 1157 (1321)
T 4f4c_A 1078 IFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAI 1157 (1321)
T ss_dssp EEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEE
T ss_pred EEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEE
Confidence 99999999986655679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCcCccccHHHHHhcCC-CCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCC
Q 020527 161 VGQEPQLLQMDIKSNIMYGC-PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPA 237 (325)
Q Consensus 161 v~Q~~~l~~~tv~enl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~ 237 (325)
|||+|.+|++||+|||.||. +...++++++++++.+++++++..+|.|+++.+++ .+||||||||+||||||+++|+
T Consensus 1158 V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ 1237 (1321)
T 4f4c_A 1158 VSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPK 1237 (1321)
T ss_dssp ECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCS
T ss_pred ECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999985 34567889999999999999999999999999974 6899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHH
Q 020527 238 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV 317 (325)
Q Consensus 238 llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 317 (325)
|||||||||+||+++++.+++.|+++. +|+|+|+|+|+++.+..||||+||++|+|+|.|+|++|+++++.|++++
T Consensus 1238 ILiLDEaTSaLD~~tE~~Iq~~l~~~~----~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~~~g~y~~L~ 1313 (1321)
T 4f4c_A 1238 ILLLDEATSALDTESEKVVQEALDRAR----EGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKGAYYKLT 1313 (1321)
T ss_dssp EEEEESCCCSTTSHHHHHHHHHHTTTS----SSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHHCC-------
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHc----CCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHH
Confidence 999999999999999999999998774 4789999999999999999999999999999999999999999999999
Q ss_pred HHhhh
Q 020527 318 KRQTE 322 (325)
Q Consensus 318 ~~~~~ 322 (325)
+.|..
T Consensus 1314 ~~Q~~ 1318 (1321)
T 4f4c_A 1314 QKQMT 1318 (1321)
T ss_dssp -----
T ss_pred HHHHh
Confidence 98753
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=9e-62 Score=526.15 Aligned_cols=314 Identities=45% Similarity=0.660 Sum_probs=280.4
Q ss_pred EeeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcccc-ccccccCCcccE
Q 020527 2 AVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS-EGVKLQRLMGHV 80 (325)
Q Consensus 2 ~~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~i 80 (325)
++|+|++++..|.+|+|.+++++.+...+..|+..+...+..++.+..+++|+.++++.+++..... .........+.|
T Consensus 309 ~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i 388 (1284)
T 3g5u_A 309 AFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNL 388 (1284)
T ss_dssp HHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeE
Confidence 4678999999999999999988888878888999999999999999999999999998876532211 111112234579
Q ss_pred EEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 020527 81 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 160 (325)
Q Consensus 81 ~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~ 160 (325)
+++||+|+|+++.+.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++..++..++|++|||
T Consensus 389 ~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 468 (1284)
T 3g5u_A 389 EFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGV 468 (1284)
T ss_dssp EEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEE
T ss_pred EEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEE
Confidence 99999999986433579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCE
Q 020527 161 VGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAI 238 (325)
Q Consensus 161 v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~l 238 (325)
|||+|.+|++||+|||.++.+ ...++++.++++.+++.++++++|.|+++.++. .+|||||||||+|||||+++|+|
T Consensus 469 v~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~i 547 (1284)
T 3g5u_A 469 VSQEPVLFATTIAENIRYGRE-DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKI 547 (1284)
T ss_dssp ECSSCCCCSSCHHHHHHHHCS-SCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSE
T ss_pred EcCCCccCCccHHHHHhcCCC-CCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999843 456788889999999999999999999998874 68999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHH
Q 020527 239 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVK 318 (325)
Q Consensus 239 lllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 318 (325)
||||||||+||+.+++.+.+.++.+. +|+|+|+||||++.+..||+|++|++|++++.|++++++++++.|.+++.
T Consensus 548 liLDEpts~LD~~~~~~i~~~l~~~~----~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~ 623 (1284)
T 3g5u_A 548 LLLDEATSALDTESEAVVQAALDKAR----EGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVM 623 (1284)
T ss_dssp EEEESTTCSSCHHHHHHHHHHHHHHH----TTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHHHHHHTTSHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHc----CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHH
Confidence 99999999999999999999998875 37899999999999988999999999999999999999999889988886
Q ss_pred Hh
Q 020527 319 RQ 320 (325)
Q Consensus 319 ~~ 320 (325)
.+
T Consensus 624 ~~ 625 (1284)
T 3g5u_A 624 TQ 625 (1284)
T ss_dssp HT
T ss_pred Hh
Confidence 65
No 11
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.6e-60 Score=516.42 Aligned_cols=316 Identities=41% Similarity=0.639 Sum_probs=279.1
Q ss_pred eeehHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccc-cccccCCcccEE
Q 020527 3 VLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSE-GVKLQRLMGHVQ 81 (325)
Q Consensus 3 ~~~g~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~i~ 81 (325)
+|+|++++..|.++++.++++..+......++..+...+..+.++..+++|+.++++.+++...... ....+...+.|+
T Consensus 953 ~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~ 1032 (1284)
T 3g5u_A 953 FRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQ 1032 (1284)
T ss_dssp HHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCCSSSSCCSSCCCTTTTSCCEE
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCcEE
Confidence 5678899999999999999888888888888888877778888999999999999998765432111 111122235699
Q ss_pred EEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 020527 82 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 161 (325)
Q Consensus 82 ~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v 161 (325)
++||+|+|+++.+.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++...+...+|++|+||
T Consensus 1033 ~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 1112 (1284)
T 3g5u_A 1033 FSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIV 1112 (1284)
T ss_dssp EEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEE
T ss_pred EEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEE
Confidence 99999999754334699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcCccccHHHHHhcCCCC-CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCE
Q 020527 162 GQEPQLLQMDIKSNIMYGCPK-DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAI 238 (325)
Q Consensus 162 ~Q~~~l~~~tv~enl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~l 238 (325)
||+|.+|++||+||+.++.+. ...++++.++++.++++++++++|.|+++.++. .+|||||||||+|||||+++|+|
T Consensus 1113 ~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~i 1192 (1284)
T 3g5u_A 1113 SQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHI 1192 (1284)
T ss_dssp ESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSS
T ss_pred CCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCE
Confidence 999999999999999997532 345778888999999999999999999998874 68999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHH
Q 020527 239 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVK 318 (325)
Q Consensus 239 lllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 318 (325)
||||||||+||+.+++.+.+.++++. .|+|+|+||||++.+..||||++|++|++++.|+|++++++++.|+++++
T Consensus 1193 LiLDEpTs~lD~~~~~~i~~~l~~~~----~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~~~~l~~~~g~y~~l~~ 1268 (1284)
T 3g5u_A 1193 LLLDEATSALDTESEKVVQEALDKAR----EGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVS 1268 (1284)
T ss_dssp EEEESCSSSCCHHHHHHHHHHHHHHS----SSSCEEEECSCTTGGGSCSEEEEEETBEEEEEECHHHHHHSCSHHHHHHH
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhC----CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHH
Confidence 99999999999999999999998863 47899999999999988999999999999999999999999999999998
Q ss_pred Hhhh
Q 020527 319 RQTE 322 (325)
Q Consensus 319 ~~~~ 322 (325)
.|..
T Consensus 1269 ~q~~ 1272 (1284)
T 3g5u_A 1269 VQAG 1272 (1284)
T ss_dssp HHC-
T ss_pred HHhh
Confidence 8753
No 12
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=3.4e-59 Score=423.40 Aligned_cols=236 Identities=48% Similarity=0.745 Sum_probs=210.6
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.|+++||+|+|++. ..++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...+|++|
T Consensus 7 ~~~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i 85 (247)
T 2ff7_A 7 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 85 (247)
T ss_dssp EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred ceeEEEEEEEeCCC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcE
Confidence 48999999999321 13699999999999999999999999999999999999999999999999999877777778889
Q ss_pred EEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCC
Q 020527 159 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDP 236 (325)
Q Consensus 159 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p 236 (325)
+|+||++.+|+.||+||+.++.. ....+.+.++++.+++.++++++|.++.+... ..+|||||||||+|||||+.+|
T Consensus 86 ~~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p 164 (247)
T 2ff7_A 86 GVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP 164 (247)
T ss_dssp EEECSSCCCTTSBHHHHHTTTCT-TCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred EEEeCCCccccccHHHHHhccCC-CCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999988899999998742 33456677888889999999998877777665 3689999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhc-CHHHHH
Q 020527 237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK-GRLYAK 315 (325)
Q Consensus 237 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~~~~ 315 (325)
++|||||||++||+.++..+.+.|+++. +|+|||+||||++.+..||++++|++|++++.|++++++.. ...|.+
T Consensus 165 ~lllLDEPts~LD~~~~~~i~~~l~~~~----~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~ 240 (247)
T 2ff7_A 165 KILIFDEATSALDYESEHVIMRNMHKIC----KGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSY 240 (247)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHH----TTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHc----CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHH
Confidence 9999999999999999999999999984 27899999999998877999999999999999999999877 677888
Q ss_pred HHHHh
Q 020527 316 LVKRQ 320 (325)
Q Consensus 316 ~~~~~ 320 (325)
++..+
T Consensus 241 l~~~~ 245 (247)
T 2ff7_A 241 LYQLQ 245 (247)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 87654
No 13
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=5.4e-59 Score=427.46 Aligned_cols=241 Identities=38% Similarity=0.659 Sum_probs=207.6
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.|+++||+++|++....++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...++++|
T Consensus 16 ~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 95 (271)
T 2ixe_A 16 LVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQV 95 (271)
T ss_dssp CEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHE
T ss_pred eEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccE
Confidence 59999999999751124699999999999999999999999999999999999999999999999998776666678889
Q ss_pred EEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCC
Q 020527 159 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDP 236 (325)
Q Consensus 159 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p 236 (325)
+||||++.+|+.||+||+.++.......+.+....+..++.++++.++.++.+... ..+|||||||||+|||||+.+|
T Consensus 96 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p 175 (271)
T 2ixe_A 96 AAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKP 175 (271)
T ss_dssp EEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCC
T ss_pred EEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999988899999998743222214455566667788888888766655443 4689999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHH
Q 020527 237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKL 316 (325)
Q Consensus 237 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~ 316 (325)
++|||||||++||+.++..+.+.|+++.++ .|+|||+||||++.+..||+|++|++|++++.|++++++.....|.++
T Consensus 176 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~--~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~ 253 (271)
T 2ixe_A 176 RLLILDNATSALDAGNQLRVQRLLYESPEW--ASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSM 253 (271)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHCTTT--TTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHH
T ss_pred CEEEEECCccCCCHHHHHHHHHHHHHHHhh--cCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCcHHHHHH
Confidence 999999999999999999999999998542 488999999999988779999999999999999999998877788888
Q ss_pred HHHhh
Q 020527 317 VKRQT 321 (325)
Q Consensus 317 ~~~~~ 321 (325)
+..+.
T Consensus 254 ~~~~~ 258 (271)
T 2ixe_A 254 VEALA 258 (271)
T ss_dssp HHC--
T ss_pred HHHhh
Confidence 76653
No 14
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=5.6e-58 Score=418.35 Aligned_cols=237 Identities=40% Similarity=0.667 Sum_probs=208.7
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.|+++||+++|++....++|+|+||+|++||+++|+||||||||||+|+|+|+++| +|+|.++|+++...+...+|++|
T Consensus 17 ~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i 95 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSII 95 (260)
T ss_dssp CEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTE
T ss_pred eEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccE
Confidence 59999999999753223699999999999999999999999999999999999987 89999999998776667778899
Q ss_pred EEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCC
Q 020527 159 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDP 236 (325)
Q Consensus 159 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p 236 (325)
+|+||++.+|+.||+||+.++.. ....+++.++++..++.++++.++.++++..+ ..+|||||||||+|||||+.+|
T Consensus 96 ~~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 96 GIVPQDTILFNETIKYNILYGKL-DATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp EEECSSCCCCSEEHHHHHHTTCT-TCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEcCCCcccccCHHHHHhccCC-CCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 99999999998899999998642 23455667778888888888888877666443 4689999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHH
Q 020527 237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKL 316 (325)
Q Consensus 237 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~ 316 (325)
++|||||||++||+.++..+.+.|+++. +++|||+||||++.+..||++++|++|++++.|++++++.....|.++
T Consensus 175 ~lllLDEPts~LD~~~~~~i~~~l~~l~----~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 250 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKTEYLFQKAVEDLR----KNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEM 250 (260)
T ss_dssp SEEEEECCCCTTCHHHHHHHHHHHHHHT----TTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhc----CCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHHH
Confidence 9999999999999999999999999984 268999999999988779999999999999999999998877788888
Q ss_pred HHHhh
Q 020527 317 VKRQT 321 (325)
Q Consensus 317 ~~~~~ 321 (325)
+..+.
T Consensus 251 ~~~~~ 255 (260)
T 2ghi_A 251 WNMQS 255 (260)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 87654
No 15
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=2.6e-59 Score=423.17 Aligned_cols=235 Identities=42% Similarity=0.670 Sum_probs=207.5
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 159 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~ 159 (325)
|+++||+|+|+++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...+|++|+
T Consensus 2 l~~~~l~~~y~~~--~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSSSS--SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeCCC--CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 7899999999422 46999999999999999999999999999999999999999999999999997665556678899
Q ss_pred EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCCC
Q 020527 160 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPA 237 (325)
Q Consensus 160 ~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p~ 237 (325)
|+||++.+|+.||+||+.++.......+.+.++++..++.++++++|.++.+..+ ..+|||||||||+|||||+++|+
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 159 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999998899999998732234456677788888888888888777766554 36899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHH
Q 020527 238 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV 317 (325)
Q Consensus 238 llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 317 (325)
+|||||||++||+.+++.+.+.|+++. +|+|||++|||++.+..||++++|++|++++.|++++++.....|.+++
T Consensus 160 lllLDEPts~LD~~~~~~i~~~l~~~~----~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 235 (243)
T 1mv5_A 160 ILMLDEATASLDSESESMVQKALDSLM----KGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYV 235 (243)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHH----TTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHhc----CCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhccHHHHHHH
Confidence 999999999999999999999999985 2789999999999887799999999999999999999988777788887
Q ss_pred HHh
Q 020527 318 KRQ 320 (325)
Q Consensus 318 ~~~ 320 (325)
..+
T Consensus 236 ~~~ 238 (243)
T 1mv5_A 236 SEQ 238 (243)
T ss_dssp HCC
T ss_pred Hhh
Confidence 654
No 16
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1e-58 Score=439.49 Aligned_cols=221 Identities=30% Similarity=0.451 Sum_probs=187.5
Q ss_pred ccEEEEEEEEECCCCC-CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHH---
Q 020527 78 GHVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW--- 153 (325)
Q Consensus 78 ~~i~~~~v~~~y~~~~-~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~--- 153 (325)
.+|+++||+|+|+++. ..++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..++..+
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 3699999999996431 236999999999999999999999999999999999999999999999999998877543
Q ss_pred HhcceEEEccCCcCc-cccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 020527 154 LREKIGFVGQEPQLL-QMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 227 (325)
Q Consensus 154 ~r~~i~~v~Q~~~l~-~~tv~enl~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~ 227 (325)
+|++||||||++.+| ..||+||+.++.. ..... +++.++++.+++.+..++. +.+|||||||||+
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~---------~~~LSGGqkQRVa 173 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSY---------PSNLSGGQKQRVA 173 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCC---------TTTSCHHHHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCC---------hhhCCHHHHHHHH
Confidence 478899999999988 5799999987521 11122 2234444544444433333 3689999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHH
Q 020527 228 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL 306 (325)
Q Consensus 228 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l 306 (325)
|||||+.+|++||||||||+||+.++..++++|++++++ .|+|||+||||++.+.. ||||++|++|++++.|+++++
T Consensus 174 IArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~--~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev 251 (366)
T 3tui_C 174 IARALASNPKVLLCDQATSALDPATTRSILELLKDINRR--LGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251 (366)
T ss_dssp HHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH--SCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHH
T ss_pred HHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHh--CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999999753 48999999999999865 999999999999999999999
Q ss_pred hhc
Q 020527 307 LHK 309 (325)
Q Consensus 307 ~~~ 309 (325)
+++
T Consensus 252 ~~~ 254 (366)
T 3tui_C 252 FSH 254 (366)
T ss_dssp HSS
T ss_pred HhC
Confidence 875
No 17
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=2.8e-58 Score=423.11 Aligned_cols=223 Identities=28% Similarity=0.469 Sum_probs=183.7
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCC--CCHHHHhc
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD--LDIRWLRE 156 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~--~~~~~~r~ 156 (325)
.|+++||+|+|+++ ..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. .+...+|+
T Consensus 7 ~l~i~~ls~~y~~~--~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 7 ILKVEELNYNYSDG--THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEECTTS--CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred EEEEEEEEEEECCC--CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 49999999999753 359999999999999999999999999999999999999999999999999852 22345678
Q ss_pred ceEEEccCC--cCccccHHHHHhcCCC-CCCCHH----HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 020527 157 KIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 229 (325)
Q Consensus 157 ~i~~v~Q~~--~l~~~tv~enl~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA 229 (325)
+||||||+| .+|..||+||+.++.. ...... ++.++++.+++.++.+ ....+|||||||||+||
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~---------~~~~~LSgGqkQRv~iA 155 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKD---------KPTHCLSFGQKKRVAIA 155 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTT---------SBGGGSCHHHHHHHHHH
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc---------CCcccCCHHHHHHHHHH
Confidence 999999997 4568899999987531 112222 2333444444333222 22367999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527 230 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 308 (325)
Q Consensus 230 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 308 (325)
|||+.+|++|||||||++||+.++..++++|++++++ .|+|||+||||++.+.. ||||++|++|++++.|+++++++
T Consensus 156 raL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~--~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 156 GVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKE--LGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp HHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHH--HCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhh--CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999999999999632 38899999999999865 99999999999999999999987
Q ss_pred cCHHHH
Q 020527 309 KGRLYA 314 (325)
Q Consensus 309 ~~~~~~ 314 (325)
....+.
T Consensus 234 ~~~~~~ 239 (275)
T 3gfo_A 234 EKEVIR 239 (275)
T ss_dssp HHHHHH
T ss_pred CHHHHH
Confidence 654443
No 18
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.8e-57 Score=416.12 Aligned_cols=217 Identities=27% Similarity=0.420 Sum_probs=186.0
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.|+++||+++|++ .++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...+++.+
T Consensus 11 ~l~~~~l~~~~~~---~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 11 LLEASHLHYHVQQ---QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred eEEEEeEEEEeCC---eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 5999999999975 3699999999999999999999999999999999999999999999999999888887788889
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCCC---CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 020527 159 GFVGQEPQLL-QMDIKSNIMYGCPKD---VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 234 (325)
Q Consensus 159 ~~v~Q~~~l~-~~tv~enl~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~ 234 (325)
+|+||++.++ ..||+||+.++.... ...+.+.++++.+++.++. .....+|||||||||+|||||++
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---------~~~~~~LSgGq~QRv~iAraL~~ 158 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALA---------QRDYRVLSGGEQQRVQLARVLAQ 158 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTT---------TSBGGGCCHHHHHHHHHHHHHHH
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHh---------cCCcccCCHHHHHHHHHHHHHhc
Confidence 9999999874 789999998864221 1123334444444432222 22235799999999999999999
Q ss_pred ------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHh
Q 020527 235 ------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELL 307 (325)
Q Consensus 235 ------~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~ 307 (325)
+|++|||||||+|||+.++..+.+.|++++++ .++|||+||||++.+. .||||++|++|++++.|++++++
T Consensus 159 ~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~--~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 159 LWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQ--EPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp TCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHH--SSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred ccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHc--CCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99999999999999999999999999999753 3689999999999986 59999999999999999999987
Q ss_pred hc
Q 020527 308 HK 309 (325)
Q Consensus 308 ~~ 309 (325)
+.
T Consensus 237 ~~ 238 (266)
T 4g1u_C 237 NA 238 (266)
T ss_dssp CH
T ss_pred Cc
Confidence 64
No 19
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=2.5e-57 Score=429.63 Aligned_cols=218 Identities=28% Similarity=0.491 Sum_probs=184.5
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCC--CHHHHhc
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL--DIRWLRE 156 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~--~~~~~r~ 156 (325)
.|+++||+|+|++ .++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... .....++
T Consensus 4 ~l~i~~ls~~y~~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQN---TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 5999999999975 3699999999999999999999999999999999999999999999999998321 1223467
Q ss_pred ceEEEccCCcCc-cccHHHHHhcCCCCC-CC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 020527 157 KIGFVGQEPQLL-QMDIKSNIMYGCPKD-VK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 230 (325)
Q Consensus 157 ~i~~v~Q~~~l~-~~tv~enl~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 230 (325)
+||||||++.+| .+||+||+.|+.... .. .+++.++++.+++.++.++.+ .+|||||||||+|||
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~---------~~LSGGq~QRValAr 151 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYP---------HELSGGQQQRAALAR 151 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCG---------GGSCHHHHHHHHHHH
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCCh---------hhCCHHHHHHHHHHH
Confidence 899999999998 589999999975321 11 223445555555554444433 679999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhhc
Q 020527 231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 309 (325)
Q Consensus 231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~ 309 (325)
||+.+|++||||||||+||+..+..+++.+.++.++ .|+|+|+||||++++. .||||++|++|++++.|+++++++.
T Consensus 152 AL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~--~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 152 ALAPDPELILLDEPFSALDEQLRRQIREDMIAALRA--NGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH--TTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence 999999999999999999999999999988877653 4899999999999986 4999999999999999999999875
Q ss_pred C
Q 020527 310 G 310 (325)
Q Consensus 310 ~ 310 (325)
.
T Consensus 230 p 230 (359)
T 3fvq_A 230 P 230 (359)
T ss_dssp C
T ss_pred c
Confidence 3
No 20
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=5e-58 Score=412.82 Aligned_cols=221 Identities=32% Similarity=0.467 Sum_probs=177.1
Q ss_pred EEEEEEEEECCCCC-CCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHH----
Q 020527 80 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL---- 154 (325)
Q Consensus 80 i~~~~v~~~y~~~~-~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~---- 154 (325)
|+++||+|+|+++. ..++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999997431 1359999999999999999999999999999999999999999999999999988775542
Q ss_pred hcceEEEccCCcCcc-ccHHHHHhcCCC----CCCCHHHHHHHHHHcCHHHHHHhCCCCcc-cccCCCCCChHHHHHHHH
Q 020527 155 REKIGFVGQEPQLLQ-MDIKSNIMYGCP----KDVKNEDIEWAAKQAYVHEFILSLPCGYE-TLVDDDLLSGGQKQRIAI 228 (325)
Q Consensus 155 r~~i~~v~Q~~~l~~-~tv~enl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~LSgGq~QRv~i 228 (325)
+++|||+||++.+|+ .||+||+.++.. .....+... ..+.+.++.+..... ....+.+|||||||||+|
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~i 156 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERR-----KRALECLKMAELEERFANHKPNQLSGGQQQRVAI 156 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHH-----HHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHH-----HHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHH
Confidence 456999999999885 699999987421 011221111 112233333332211 122346899999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHh
Q 020527 229 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL 307 (325)
Q Consensus 229 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~ 307 (325)
||||+.+|++|||||||++||+.++..+.+.+++++++ .|+|||+||||++.+..||||++|++|++++.++++++.
T Consensus 157 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~--~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 233 (235)
T 3tif_A 157 ARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEE--DGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGFD 233 (235)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC---
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH--cCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhhhc
Confidence 99999999999999999999999999999999999653 388999999999977679999999999999999877653
No 21
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=2.7e-57 Score=432.20 Aligned_cols=217 Identities=29% Similarity=0.468 Sum_probs=184.8
Q ss_pred cccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhc
Q 020527 77 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 156 (325)
Q Consensus 77 ~~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~ 156 (325)
|..|+++||+|+|++ ..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.. ++
T Consensus 1 M~~l~~~~l~~~yg~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r 75 (381)
T 3rlf_A 1 MASVQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ER 75 (381)
T ss_dssp -CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GS
T ss_pred CCEEEEEeEEEEECC---EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HC
Confidence 345999999999975 3699999999999999999999999999999999999999999999999999876654 46
Q ss_pred ceEEEccCCcCc-cccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 020527 157 KIGFVGQEPQLL-QMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 230 (325)
Q Consensus 157 ~i~~v~Q~~~l~-~~tv~enl~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 230 (325)
.||||||++.+| .+||+||+.|+.. ..... +++.++++.+++.++.++. +.+|||||||||+|||
T Consensus 76 ~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~---------p~~LSGGqrQRVaiAr 146 (381)
T 3rlf_A 76 GVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRK---------PKALSGGQRQRVAIGR 146 (381)
T ss_dssp CEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCC---------GGGSCHHHHHHHHHHH
T ss_pred CEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCC---------hhHCCHHHHHHHHHHH
Confidence 799999999998 5799999988632 11122 2233444444444333333 3679999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhhc
Q 020527 231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 309 (325)
Q Consensus 231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~ 309 (325)
||+.+|++||||||||+||+..+.++++.|++++++ .|+|+|+||||++++. .||||++|++|++++.|+++++++.
T Consensus 147 AL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~--~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~ 224 (381)
T 3rlf_A 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR--LGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (381)
T ss_dssp HHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhC
Confidence 999999999999999999999999999999999753 4899999999999886 5999999999999999999999875
No 22
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.1e-56 Score=410.16 Aligned_cols=216 Identities=34% Similarity=0.490 Sum_probs=180.7
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCC--CCCHHHHhc
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT--DLDIRWLRE 156 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~--~~~~~~~r~ 156 (325)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. ......+++
T Consensus 24 ~l~i~~l~~~y~~---~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 5999999999964 36999999999999999999999999999999999999999999999999985 223445677
Q ss_pred ceEEEccCCcCcc-ccHHHHHhcCC--CCCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 020527 157 KIGFVGQEPQLLQ-MDIKSNIMYGC--PKDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 229 (325)
Q Consensus 157 ~i~~v~Q~~~l~~-~tv~enl~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA 229 (325)
+|+||||++.+|+ .||+||+.++. ...... +++.++++.+++.+..+ ....+|||||||||+||
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~---------~~~~~LSgGqkQRv~lA 171 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAH---------AYPDSLSGGQAQRVAIA 171 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTT---------SCGGGSCHHHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc---------CChhhCCHHHHHHHHHH
Confidence 8999999998884 69999998742 111121 12233333333332222 22367999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527 230 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 308 (325)
Q Consensus 230 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 308 (325)
|||+.+|++|||||||++||+.++..+.+.|+++++ +|+|||++|||++.+.. ||++++|++|++++.|+++++++
T Consensus 172 raL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~---~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
T 2olj_A 172 RALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN---EGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 248 (263)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999999965 37899999999999864 99999999999999999999986
Q ss_pred c
Q 020527 309 K 309 (325)
Q Consensus 309 ~ 309 (325)
.
T Consensus 249 ~ 249 (263)
T 2olj_A 249 R 249 (263)
T ss_dssp S
T ss_pred C
Confidence 5
No 23
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.1e-56 Score=402.33 Aligned_cols=216 Identities=22% Similarity=0.394 Sum_probs=180.6
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHH-hcc
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REK 157 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~-r~~ 157 (325)
+|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...+ +++
T Consensus 6 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 4899999999975 369999999999999999999999999999999999999999999999999977665543 556
Q ss_pred eEEEccCCcCcc-ccHHHHHhcCCCCCCCH----HHHHHHHHHcC-HHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 020527 158 IGFVGQEPQLLQ-MDIKSNIMYGCPKDVKN----EDIEWAAKQAY-VHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 231 (325)
Q Consensus 158 i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 231 (325)
|+|+||++.+|+ .||+||+.++....... +.+.+.++..+ +.+..++ ...+|||||||||+||||
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~---------~~~~LSgGq~qrv~lAra 153 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQ---------LGGTLSGGEQQMLAIGRA 153 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTS---------BSSSSCHHHHHHHHHHHH
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcC---------ChhhCCHHHHHHHHHHHH
Confidence 999999998885 69999998863111111 12233333332 3322221 236799999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhhc
Q 020527 232 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 309 (325)
Q Consensus 232 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~ 309 (325)
|+.+|++|||||||++||+.++..+.+.|+++++ .|+|||++|||++.+. .||++++|++|++++.|+++++++.
T Consensus 154 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~---~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 229 (240)
T 1ji0_A 154 LMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ---EGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp HTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH---TTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 9999999999999999999999999999999864 3789999999998875 5999999999999999999998764
No 24
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=4.5e-56 Score=406.18 Aligned_cols=216 Identities=31% Similarity=0.465 Sum_probs=182.6
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCC----------
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD---------- 148 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~---------- 148 (325)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..
T Consensus 6 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 4999999999964 369999999999999999999999999999999999999999999999999851
Q ss_pred CCH---HHHhcceEEEccCCcCc-cccHHHHHhcCC--CCCCC----HHHHHHHHHHcCHHHH-HHhCCCCcccccCCCC
Q 020527 149 LDI---RWLREKIGFVGQEPQLL-QMDIKSNIMYGC--PKDVK----NEDIEWAAKQAYVHEF-ILSLPCGYETLVDDDL 217 (325)
Q Consensus 149 ~~~---~~~r~~i~~v~Q~~~l~-~~tv~enl~~~~--~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 217 (325)
.+. ..++++||||||++.+| ..||+||+.++. ..... .+.+.++++.+++.+. .++.+ .+
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~---------~~ 153 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP---------VH 153 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG---------GG
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCc---------cc
Confidence 332 24567899999999888 479999998742 11111 1233445555555554 44333 67
Q ss_pred CChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCE
Q 020527 218 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGR 296 (325)
Q Consensus 218 LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~ 296 (325)
|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++++ +|+|||+||||++.+. .||+|++|++|+
T Consensus 154 LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~---~g~tvi~vtHd~~~~~~~~d~v~~l~~G~ 230 (262)
T 1b0u_A 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE---EGKTMVVVTHEMGFARHVSSHVIFLHQGK 230 (262)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH---TTCCEEEECSCHHHHHHHCSEEEEEETTE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999965 3789999999999986 499999999999
Q ss_pred EEEEcChHHHhhc
Q 020527 297 IIEVGNHAELLHK 309 (325)
Q Consensus 297 i~~~g~~~~l~~~ 309 (325)
+++.|+++++++.
T Consensus 231 i~~~g~~~~~~~~ 243 (262)
T 1b0u_A 231 IEEEGDPEQVFGN 243 (262)
T ss_dssp EEEEECHHHHHHS
T ss_pred EEEeCCHHHHHhC
Confidence 9999999999864
No 25
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=4.2e-56 Score=422.05 Aligned_cols=217 Identities=26% Similarity=0.471 Sum_probs=185.1
Q ss_pred ccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 020527 78 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 157 (325)
Q Consensus 78 ~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~ 157 (325)
..|+++||+|+|++ ..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+.. +++
T Consensus 2 ~~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ 76 (359)
T 2yyz_A 2 PSIRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YRE 76 (359)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTT
T ss_pred cEEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCc
Confidence 35899999999964 3699999999999999999999999999999999999999999999999999766543 578
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCCCCC-C----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 020527 158 IGFVGQEPQLL-QMDIKSNIMYGCPKDV-K----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 231 (325)
Q Consensus 158 i~~v~Q~~~l~-~~tv~enl~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 231 (325)
||||||++.+| .+||+||+.|+..... . .+++.++++.+++.++.++. +.+|||||||||+||||
T Consensus 77 ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~---------~~~LSgGq~QRvalArA 147 (359)
T 2yyz_A 77 VGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRK---------PTQLSGGQQQRVALARA 147 (359)
T ss_dssp EEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSC---------GGGSCHHHHHHHHHHHH
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCC---------hhhCCHHHHHHHHHHHH
Confidence 99999999998 5799999998743211 1 12344455555544443333 36799999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhhcC
Q 020527 232 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHKG 310 (325)
Q Consensus 232 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~~ 310 (325)
|+.+|++||||||||+||+.++..+.+.|+++.++ .|+|+|+||||++++. .||||++|++|++++.|++++++++.
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p 225 (359)
T 2yyz_A 148 LVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQE--LGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSP 225 (359)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 99999999999999999999999999999998653 3789999999999885 59999999999999999999998753
No 26
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.4e-56 Score=405.53 Aligned_cols=217 Identities=26% Similarity=0.395 Sum_probs=182.2
Q ss_pred CcccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHh
Q 020527 76 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 155 (325)
Q Consensus 76 ~~~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r 155 (325)
.|+.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ....++
T Consensus 12 ~~~~l~i~~l~~~y~~---~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~ 87 (256)
T 1vpl_A 12 HMGAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVR 87 (256)
T ss_dssp --CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHH
T ss_pred cCCeEEEEEEEEEECC---EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHh
Confidence 4667999999999964 369999999999999999999999999999999999999999999999999865 345667
Q ss_pred cceEEEccCCcCcc-ccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 020527 156 EKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 229 (325)
Q Consensus 156 ~~i~~v~Q~~~l~~-~tv~enl~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA 229 (325)
++|||+||++.+|+ .||+||+.++.. ..... +.+.++++.+++.+..++ ...+|||||||||+||
T Consensus 88 ~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~---------~~~~LSgGq~qRv~lA 158 (256)
T 1vpl_A 88 KLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKD---------RVSTYSKGMVRKLLIA 158 (256)
T ss_dssp TTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGS---------BGGGCCHHHHHHHHHH
T ss_pred hcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcC---------ChhhCCHHHHHHHHHH
Confidence 88999999998874 699999987421 01111 223344444444333322 2357999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527 230 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 308 (325)
Q Consensus 230 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 308 (325)
|||+.+|++|||||||++||+.++..+.+.|+++++ .|+|||++|||++.+.. ||++++|++|++++.|+++++.+
T Consensus 159 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~---~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ---EGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh---CCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 999999999999999999999999999999999964 37899999999999876 99999999999999999999864
No 27
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.7e-56 Score=425.42 Aligned_cols=226 Identities=25% Similarity=0.425 Sum_probs=203.3
Q ss_pred CcccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHh
Q 020527 76 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 155 (325)
Q Consensus 76 ~~~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r 155 (325)
....|+++||+|+|+.. ...+|+|+||+|++||+++|+||||||||||||+|+|+++ ++|+|.++|+++...+...+|
T Consensus 16 ~~~~i~~~~l~~~y~~~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~r 93 (390)
T 3gd7_A 16 SGGQMTVKDLTAKYTEG-GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWR 93 (390)
T ss_dssp SSCCEEEEEEEEESSSS-SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHH
T ss_pred CCCeEEEEEEEEEecCC-CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHh
Confidence 34569999999999532 2469999999999999999999999999999999999998 999999999999988888888
Q ss_pred cceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHc
Q 020527 156 EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAIL 233 (325)
Q Consensus 156 ~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~ 233 (325)
+.||||||++.+|++||+||+.+.. ....+++.++++.+++.+++++.|..+++.... .+|||||||||+|||||+
T Consensus 94 r~ig~v~Q~~~lf~~tv~enl~~~~--~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~ 171 (390)
T 3gd7_A 94 KAFGVIPQKVFIFSGTFRKNLDPNA--AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVL 171 (390)
T ss_dssp HTEEEESCCCCCCSEEHHHHHCTTC--CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCcccCccCHHHHhhhcc--ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHh
Confidence 9999999999999999999998542 345677888999999999999999877776653 469999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhc
Q 020527 234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK 309 (325)
Q Consensus 234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 309 (325)
.+|++||||||||+||+.++.++++.|+++. .++|+|++|||++.+..||||++|++|+|++.|+++++++.
T Consensus 172 ~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~----~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~ 243 (390)
T 3gd7_A 172 SKAKILLLDEPSAHLDPVTYQIIRRTLKQAF----ADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHY 243 (390)
T ss_dssp TTCCEEEEESHHHHSCHHHHHHHHHHHHTTT----TTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHC
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHh----CCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999998763 37899999999987777999999999999999999999875
No 28
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=3.5e-56 Score=405.93 Aligned_cols=216 Identities=25% Similarity=0.375 Sum_probs=179.0
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHH-HHhcc
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR-WLREK 157 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~-~~r~~ 157 (325)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.. .++++
T Consensus 7 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 5999999999964 3699999999999999999999999999999999999999999999999998765543 35678
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCCC---C-----------CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHH
Q 020527 158 IGFVGQEPQLL-QMDIKSNIMYGCPK---D-----------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ 222 (325)
Q Consensus 158 i~~v~Q~~~l~-~~tv~enl~~~~~~---~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq 222 (325)
|+|+||++.+| ..||+||+.++... . ..... ....+.++++.+...........+|||||
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGq 158 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEE-----MVEKAFKILEFLKLSHLYDRKAGELSGGQ 158 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHH-----HHHHHHHHHHHTTCGGGTTSBGGGSCHHH
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHH-----HHHHHHHHHHHcCCchhhCCCchhCCHHH
Confidence 99999999888 58999999886321 1 11111 01122344444432221222236799999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEc
Q 020527 223 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVG 301 (325)
Q Consensus 223 ~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g 301 (325)
||||+|||||+.+|++|||||||++||+.++..+.+.|+++++ +|+|||++|||++.+. .||++++|++|++++.|
T Consensus 159 kQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~---~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g 235 (257)
T 1g6h_A 159 MKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA---KGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235 (257)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH---CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEe
Confidence 9999999999999999999999999999999999999999964 3889999999999886 59999999999999999
Q ss_pred ChHH
Q 020527 302 NHAE 305 (325)
Q Consensus 302 ~~~~ 305 (325)
++++
T Consensus 236 ~~~~ 239 (257)
T 1g6h_A 236 RGEE 239 (257)
T ss_dssp ESHH
T ss_pred CHHH
Confidence 9998
No 29
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.3e-55 Score=397.64 Aligned_cols=228 Identities=27% Similarity=0.471 Sum_probs=190.8
Q ss_pred ccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 020527 78 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 157 (325)
Q Consensus 78 ~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~ 157 (325)
..|+++||+++|++. +.++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| +
T Consensus 2 ~~l~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~ 67 (237)
T 2cbz_A 2 NSITVRNATFTWARS-DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------S 67 (237)
T ss_dssp CCEEEEEEEEESCTT-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------C
T ss_pred CeEEEEEEEEEeCCC-CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------E
Confidence 358999999999732 24699999999999999999999999999999999999999999999998 3
Q ss_pred eEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCC
Q 020527 158 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRD 235 (325)
Q Consensus 158 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~ 235 (325)
|+|+||++.++..||+||+.++... ..+...++.+..++.+.+...+.++.+... ..+|||||||||+|||||+.+
T Consensus 68 i~~v~Q~~~~~~~tv~enl~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~ 145 (237)
T 2cbz_A 68 VAYVPQQAWIQNDSLRENILFGCQL--EEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSN 145 (237)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTSCC--CTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred EEEEcCCCcCCCcCHHHHhhCcccc--CHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcC
Confidence 9999999988889999999986422 122344555666666666655555443332 468999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHH
Q 020527 236 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAK 315 (325)
Q Consensus 236 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~ 315 (325)
|++|||||||++||+.++..+.+.+.+..+. .+|+|||++|||++.+..||++++|++|++++.|+++++++....|.+
T Consensus 146 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~-~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~ 224 (237)
T 2cbz_A 146 ADIYLFDDPLSAVDAHVGKHIFENVIGPKGM-LKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAE 224 (237)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHTTSTTST-TTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHHTSHHHH
T ss_pred CCEEEEeCcccccCHHHHHHHHHHHHHHHhh-cCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhccHHHHH
Confidence 9999999999999999999999988532111 237899999999998877999999999999999999999888888888
Q ss_pred HHHHhhh
Q 020527 316 LVKRQTE 322 (325)
Q Consensus 316 ~~~~~~~ 322 (325)
++..|..
T Consensus 225 ~~~~~~~ 231 (237)
T 2cbz_A 225 FLRTYAS 231 (237)
T ss_dssp HHHHTCC
T ss_pred HHHHHHh
Confidence 8877653
No 30
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=2.9e-56 Score=398.55 Aligned_cols=213 Identities=26% Similarity=0.406 Sum_probs=174.9
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHH---Hh
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW---LR 155 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~---~r 155 (325)
+|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+... ++
T Consensus 4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 4899999999974 36999999999999999999999999999999999999999999999999987665432 33
Q ss_pred -cceEEEccCCcCc-cccHHHHHhcCCC-CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 020527 156 -EKIGFVGQEPQLL-QMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 232 (325)
Q Consensus 156 -~~i~~v~Q~~~l~-~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 232 (325)
++|+|+||++.+| ..||+||+.++.. ........ ...+.++++.+...........+|||||||||+|||||
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral 155 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEA-----KERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARAL 155 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHH-----HHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHT
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHH-----HHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 6799999999888 4799999987421 11111111 11123344444332222233467999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcC
Q 020527 233 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGN 302 (325)
Q Consensus 233 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~ 302 (325)
+.+|++|||||||++||+.++..+.+.|+++++ +|+|||++|||++.+..||++++|++|++++.|+
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~---~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 156 ANEPILLFADEPTGNLDSANTKRVMDIFLKINE---GGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 999999999999999999999999999999965 3789999999999886699999999999999875
No 31
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=4e-56 Score=422.67 Aligned_cols=221 Identities=33% Similarity=0.483 Sum_probs=182.7
Q ss_pred ccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 020527 78 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 157 (325)
Q Consensus 78 ~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~ 157 (325)
..|+++|++|+|++ .++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+.. +++
T Consensus 2 ~~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ 76 (362)
T 2it1_A 2 VEIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRN 76 (362)
T ss_dssp CCEEEEEEEEESSS---SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTT
T ss_pred cEEEEEeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCc
Confidence 35999999999964 3699999999999999999999999999999999999999999999999999766543 578
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCC-CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 020527 158 IGFVGQEPQLL-QMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 235 (325)
Q Consensus 158 i~~v~Q~~~l~-~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~ 235 (325)
||||||++.+| .+||+||+.|+.. ......... ..+.++++.+.........+.+|||||||||+|||||+.+
T Consensus 77 ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~-----~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~ 151 (362)
T 2it1_A 77 VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEID-----KKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKE 151 (362)
T ss_dssp EEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHH-----HHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTC
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcC
Confidence 99999999998 4799999988631 111121111 1122334433332222223468999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhhcC
Q 020527 236 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHKG 310 (325)
Q Consensus 236 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~~ 310 (325)
|++||||||||+||+.++..+.+.|+++.++ .|+|+|+||||++++. .||||++|++|++++.|++++++++.
T Consensus 152 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p 225 (362)
T 2it1_A 152 PEVLLLDEPLSNLDALLRLEVRAELKRLQKE--LGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKP 225 (362)
T ss_dssp CSEEEEESGGGGSCHHHHHHHHHHHHHHHHH--HTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHHHh--CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 9999999999999999999999999998653 3789999999999885 59999999999999999999998753
No 32
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1e-55 Score=421.17 Aligned_cols=218 Identities=29% Similarity=0.492 Sum_probs=180.7
Q ss_pred cccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhc
Q 020527 77 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 156 (325)
Q Consensus 77 ~~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~ 156 (325)
|..|+++||+|+|++ ..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+.. ++
T Consensus 9 M~~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r 83 (372)
T 1v43_A 9 MVEVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DR 83 (372)
T ss_dssp CCCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GG
T ss_pred eeeEEEEEEEEEECC---EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hC
Confidence 446999999999964 3699999999999999999999999999999999999999999999999999766543 56
Q ss_pred ceEEEccCCcCc-cccHHHHHhcCCCC-CCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 020527 157 KIGFVGQEPQLL-QMDIKSNIMYGCPK-DVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 230 (325)
Q Consensus 157 ~i~~v~Q~~~l~-~~tv~enl~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 230 (325)
+||||||++.+| .+||+||+.|+... .... +++.++++.+++.++.++. +.+|||||||||+|||
T Consensus 84 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~---------~~~LSGGq~QRvalAr 154 (372)
T 1v43_A 84 NISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRY---------PAQLSGGQRQRVAVAR 154 (372)
T ss_dssp TEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSC---------TTTCCSSCHHHHHHHH
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCC---------hhhCCHHHHHHHHHHH
Confidence 899999999998 58999999997432 1122 2233444444444333333 3689999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhhc
Q 020527 231 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 309 (325)
Q Consensus 231 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~ 309 (325)
||+.+|++||||||||+||+..+..+.+.|++++++ .|.|+|+||||++++. .||||++|++|++++.|+++++++.
T Consensus 155 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 232 (372)
T 1v43_A 155 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQK--LKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 232 (372)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999998653 3789999999999885 5999999999999999999999875
Q ss_pred C
Q 020527 310 G 310 (325)
Q Consensus 310 ~ 310 (325)
.
T Consensus 233 p 233 (372)
T 1v43_A 233 P 233 (372)
T ss_dssp C
T ss_pred c
Confidence 3
No 33
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=4.2e-56 Score=421.87 Aligned_cols=219 Identities=29% Similarity=0.450 Sum_probs=183.7
Q ss_pred ccEEEEEEEEECCCCCCCC--ceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCC---HH
Q 020527 78 GHVQFVNISFHYPSRPTVP--ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD---IR 152 (325)
Q Consensus 78 ~~i~~~~v~~~y~~~~~~~--iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~---~~ 152 (325)
.+|+++||+|+|++ .+ +|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++.... ..
T Consensus 2 ~~l~i~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~ 78 (353)
T 1oxx_K 2 VRIIVKNVSKVFKK---GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVP 78 (353)
T ss_dssp CCEEEEEEEEEEGG---GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSC
T ss_pred cEEEEEeEEEEECC---EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCC
Confidence 35999999999964 36 999999999999999999999999999999999999999999999999885411 12
Q ss_pred HHhcceEEEccCCcCcc-ccHHHHHhcCCCC-CCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHH
Q 020527 153 WLREKIGFVGQEPQLLQ-MDIKSNIMYGCPK-DVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 226 (325)
Q Consensus 153 ~~r~~i~~v~Q~~~l~~-~tv~enl~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv 226 (325)
..+++||||||++.+|+ +||+||+.|+... .... +++.++++.+++.++.++. +.+|||||||||
T Consensus 79 ~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~---------~~~LSGGq~QRv 149 (353)
T 1oxx_K 79 PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHF---------PRELSGAQQQRV 149 (353)
T ss_dssp GGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSC---------GGGSCHHHHHHH
T ss_pred hhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCC---------hhhCCHHHHHHH
Confidence 34678999999999984 7999999987432 1122 2233444444444333333 367999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHH
Q 020527 227 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAE 305 (325)
Q Consensus 227 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~ 305 (325)
+|||||+.+|++||||||||+||+.++..+.+.|+++.++ .|+|+|+||||++++. .||||++|++|++++.|++++
T Consensus 150 alAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~ 227 (353)
T 1oxx_K 150 ALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSR--LGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPED 227 (353)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHH--HCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999999999998653 3789999999999886 499999999999999999999
Q ss_pred HhhcC
Q 020527 306 LLHKG 310 (325)
Q Consensus 306 l~~~~ 310 (325)
++++.
T Consensus 228 l~~~p 232 (353)
T 1oxx_K 228 LYDNP 232 (353)
T ss_dssp HHHSC
T ss_pred HHhCc
Confidence 98753
No 34
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1e-55 Score=418.64 Aligned_cols=216 Identities=28% Similarity=0.491 Sum_probs=183.4
Q ss_pred cEEEEEEEEEC-CCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 020527 79 HVQFVNISFHY-PSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 157 (325)
Q Consensus 79 ~i~~~~v~~~y-~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~ 157 (325)
.|+++||+|+| ++ .++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+. .+++
T Consensus 14 ~l~~~~l~~~y~g~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 88 (355)
T 1z47_A 14 TIEFVGVEKIYPGG---ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRN 88 (355)
T ss_dssp EEEEEEEEECCTTS---TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSS
T ss_pred eEEEEEEEEEEcCC---CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCc
Confidence 59999999999 54 369999999999999999999999999999999999999999999999999876543 3678
Q ss_pred eEEEccCCcCcc-ccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 020527 158 IGFVGQEPQLLQ-MDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 231 (325)
Q Consensus 158 i~~v~Q~~~l~~-~tv~enl~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 231 (325)
||||||++.+|+ +||+||+.|+.. ..... +++.++++.+++.++.++. +.+|||||||||+||||
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~---------~~~LSGGq~QRvalArA 159 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRF---------PHELSGGQQQRVALARA 159 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSC---------GGGSCHHHHHHHHHHHH
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCC---------cccCCHHHHHHHHHHHH
Confidence 999999999984 799999988631 11111 2334444444444433333 36799999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHhhcC
Q 020527 232 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 310 (325)
Q Consensus 232 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~ 310 (325)
|+.+|++||||||||+||+.++..+.+.|+++.++ .|+|+|+||||++++.. ||||++|++|++++.|++++++++.
T Consensus 160 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 237 (355)
T 1z47_A 160 LAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDE--MGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKP 237 (355)
T ss_dssp HTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHH--HTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999999999999999998653 37899999999999864 9999999999999999999998753
No 35
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=9.7e-55 Score=389.93 Aligned_cols=218 Identities=25% Similarity=0.426 Sum_probs=185.0
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.|+++||+++|++. ..++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| +|
T Consensus 6 ~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~i 71 (229)
T 2pze_A 6 EVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI 71 (229)
T ss_dssp EEEEEEEEECSSTT-SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------CE
T ss_pred eEEEEEEEEEeCCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------EE
Confidence 59999999999632 24699999999999999999999999999999999999999999999998 49
Q ss_pred EEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCC
Q 020527 159 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDP 236 (325)
Q Consensus 159 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p 236 (325)
+|+||++.+|+.||+||+.++.. ..........+..++.+.++.++.+.++..+ ..+|||||||||+|||||+.+|
T Consensus 72 ~~v~q~~~~~~~tv~enl~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p 149 (229)
T 2pze_A 72 SFCSQFSWIMPGTIKENIIFGVS--YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA 149 (229)
T ss_dssp EEECSSCCCCSBCHHHHHHTTSC--CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCC
T ss_pred EEEecCCcccCCCHHHHhhccCC--cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999988899999998732 2233444566667788888887766555443 3689999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHH-HHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHH
Q 020527 237 AILLLDEATSALDSESEHYVKGVL-HALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAK 315 (325)
Q Consensus 237 ~llllDEPts~LD~~~~~~i~~~l-~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~ 315 (325)
++|||||||++||+.++..+.+.+ .++. .++|||++|||++.+..||++++|++|++++.|+++++......|.+
T Consensus 150 ~lllLDEPts~LD~~~~~~i~~~l~~~~~----~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~ 225 (229)
T 2pze_A 150 DLYLLDSPFGYLDVLTEKEIFESCVCKLM----ANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSS 225 (229)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHCCCCCT----TTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC--CHHH
T ss_pred CEEEEECcccCCCHHHHHHHHHHHHHHhh----CCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHH
Confidence 999999999999999999998863 4442 37899999999998877999999999999999999999876444544
Q ss_pred H
Q 020527 316 L 316 (325)
Q Consensus 316 ~ 316 (325)
+
T Consensus 226 ~ 226 (229)
T 2pze_A 226 K 226 (229)
T ss_dssp H
T ss_pred H
Confidence 4
No 36
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=9.8e-56 Score=421.85 Aligned_cols=217 Identities=29% Similarity=0.438 Sum_probs=183.4
Q ss_pred ccEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCC------CCH
Q 020527 78 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD------LDI 151 (325)
Q Consensus 78 ~~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~------~~~ 151 (325)
..|+++||+|+|++ .++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++.. .+.
T Consensus 2 ~~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~ 78 (372)
T 1g29_1 2 AGVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78 (372)
T ss_dssp EEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG
T ss_pred CEEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH
Confidence 35899999999964 369999999999999999999999999999999999999999999999999864 333
Q ss_pred HHHhcceEEEccCCcCc-cccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527 152 RWLREKIGFVGQEPQLL-QMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 225 (325)
Q Consensus 152 ~~~r~~i~~v~Q~~~l~-~~tv~enl~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR 225 (325)
.+++||||||++.+| .+||+||+.|+.. ..... +++.++++.+++.++.++. +.+||||||||
T Consensus 79 --~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~---------~~~LSGGq~QR 147 (372)
T 1g29_1 79 --KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRK---------PRELSGGQRQR 147 (372)
T ss_dssp --GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCC---------GGGSCHHHHHH
T ss_pred --hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCC---------cccCCHHHHHH
Confidence 257899999999998 5899999988631 11112 2334445555544433333 36799999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChH
Q 020527 226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA 304 (325)
Q Consensus 226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~ 304 (325)
|+|||||+.+|++||||||||+||+.++..+.+.|+++.++ .|+|+|+||||++++. .||||++|++|++++.|+++
T Consensus 148 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~ 225 (372)
T 1g29_1 148 VALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQ--LGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPD 225 (372)
T ss_dssp HHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHh--cCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHH
Confidence 99999999999999999999999999999999999998653 3789999999999986 59999999999999999999
Q ss_pred HHhhcC
Q 020527 305 ELLHKG 310 (325)
Q Consensus 305 ~l~~~~ 310 (325)
++++..
T Consensus 226 ~l~~~p 231 (372)
T 1g29_1 226 EVYDKP 231 (372)
T ss_dssp HHHHSC
T ss_pred HHHhCc
Confidence 998753
No 37
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=2.5e-55 Score=415.38 Aligned_cols=214 Identities=33% Similarity=0.544 Sum_probs=183.1
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 159 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~ 159 (325)
|+++||+|+|++ . +|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+. .+++||
T Consensus 2 l~~~~l~~~y~~---~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 75 (348)
T 3d31_A 2 IEIESLSRKWKN---F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIA 75 (348)
T ss_dssp EEEEEEEEECSS---C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCE
T ss_pred EEEEEEEEEECC---E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEE
Confidence 789999999963 4 9999999999999999999999999999999999999999999999999876543 367899
Q ss_pred EEccCCcCcc-ccHHHHHhcCCC--CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 020527 160 FVGQEPQLLQ-MDIKSNIMYGCP--KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 236 (325)
Q Consensus 160 ~v~Q~~~l~~-~tv~enl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p 236 (325)
||||++.+|+ +||+||+.|+.. .....+++.++++.+++.++.++. +.+|||||||||+|||||+.+|
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~---------~~~LSgGq~QRvalAraL~~~P 146 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRN---------PLTLSGGEQQRVALARALVTNP 146 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSC---------GGGSCHHHHHHHHHHHHTTSCC
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCC---------hhhCCHHHHHHHHHHHHHHcCC
Confidence 9999999984 799999988631 011124445555555544433333 3679999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhhcC
Q 020527 237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHKG 310 (325)
Q Consensus 237 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~~ 310 (325)
++||||||||+||+.++..+.+.|++++++ .|+|+|+||||++++. .||||++|++|++++.|+++++++..
T Consensus 147 ~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~--~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p 219 (348)
T 3d31_A 147 KILLLDEPLSALDPRTQENAREMLSVLHKK--NKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219 (348)
T ss_dssp SEEEEESSSTTSCHHHHHHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 999999999999999999999999999753 4889999999999885 59999999999999999999998653
No 38
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=4.9e-55 Score=400.20 Aligned_cols=216 Identities=30% Similarity=0.488 Sum_probs=184.1
Q ss_pred cEEEEEEEEECCCCCC--CCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhc
Q 020527 79 HVQFVNISFHYPSRPT--VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 156 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~--~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~ 156 (325)
+|+++||+++|+.... +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... .+++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~ 78 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRR 78 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGG
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhh
Confidence 4899999999962111 3599999999999999999999999999999999999999999999999987532 5678
Q ss_pred ceEEEccCC--cCccccHHHHHhcCCCC----CCCHHHHHHHHHHcCHH--HHHHhCCCCcccccCCCCCChHHHHHHHH
Q 020527 157 KIGFVGQEP--QLLQMDIKSNIMYGCPK----DVKNEDIEWAAKQAYVH--EFILSLPCGYETLVDDDLLSGGQKQRIAI 228 (325)
Q Consensus 157 ~i~~v~Q~~--~l~~~tv~enl~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 228 (325)
+|||+||++ .++..||+||+.++... ....+++.++++.+++. ++.++.+ .+|||||||||+|
T Consensus 79 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---------~~LSgGq~qRv~l 149 (266)
T 2yz2_A 79 NIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP---------FFLSGGEKRRVAI 149 (266)
T ss_dssp GEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCG---------GGSCHHHHHHHHH
T ss_pred hEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCCh---------hhCCHHHHHHHHH
Confidence 899999996 34578999999886321 12234566677777765 5554443 5799999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcChHHHh
Q 020527 229 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 307 (325)
Q Consensus 229 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 307 (325)
||||+.+|++|||||||++||+.++..+.+.|+++++ +|+|||++|||++.+.. ||++++|++|++++.|++++++
T Consensus 150 AraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~---~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 226 (266)
T 2yz2_A 150 ASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKT---LGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFL 226 (266)
T ss_dssp HHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999965 37899999999999875 9999999999999999999887
Q ss_pred hc
Q 020527 308 HK 309 (325)
Q Consensus 308 ~~ 309 (325)
..
T Consensus 227 ~~ 228 (266)
T 2yz2_A 227 EK 228 (266)
T ss_dssp HH
T ss_pred cC
Confidence 54
No 39
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.7e-55 Score=405.63 Aligned_cols=219 Identities=25% Similarity=0.389 Sum_probs=179.2
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCC--CCCHHHHhc
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT--DLDIRWLRE 156 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~--~~~~~~~r~ 156 (325)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. ..+...+++
T Consensus 21 ~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 21 LIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred eEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 5999999999974 36999999999999999999999999999999999999999999999999986 556666788
Q ss_pred ceEEEccCCcC-cc--ccHHHHHhcCCCCC------CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 020527 157 KIGFVGQEPQL-LQ--MDIKSNIMYGCPKD------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 227 (325)
Q Consensus 157 ~i~~v~Q~~~l-~~--~tv~enl~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~ 227 (325)
+|+|+||++.+ +. .||+||+.++.... ...+. ...+.++++.+...........+|||||||||+
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~ 171 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEI------RNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVM 171 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHH------HHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHH------HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHH
Confidence 99999999865 43 49999998863110 11111 011223344433221112223679999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEE--EEEecCchHHH-hcCEEEEEeCCEEEEEcChH
Q 020527 228 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTV--IVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA 304 (325)
Q Consensus 228 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tv--i~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~ 304 (325)
|||||+.+|++|||||||++||+.+++.+.++|++++++ |+|| |+||||++.+. .||+|++|++|++++.|+++
T Consensus 172 lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~---g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 248 (279)
T 2ihy_A 172 IARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS---YPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVE 248 (279)
T ss_dssp HHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH---CTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHH
T ss_pred HHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC---CCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999653 7899 99999999985 59999999999999999999
Q ss_pred HHhhc
Q 020527 305 ELLHK 309 (325)
Q Consensus 305 ~l~~~ 309 (325)
++++.
T Consensus 249 ~~~~~ 253 (279)
T 2ihy_A 249 DILTS 253 (279)
T ss_dssp HHCSH
T ss_pred HHhcc
Confidence 98754
No 40
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=2.9e-55 Score=395.80 Aligned_cols=215 Identities=28% Similarity=0.427 Sum_probs=178.2
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 159 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~ 159 (325)
|+++|++++|++ +|+|+||+|++ |+++|+||||||||||+|+|+|+++|++|+|.++|+++.... ..+++||
T Consensus 2 l~~~~l~~~y~~-----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~ 73 (240)
T 2onk_A 2 FLKVRAEKRLGN-----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIG 73 (240)
T ss_dssp CEEEEEEEEETT-----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCB
T ss_pred EEEEEEEEEeCC-----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEE
Confidence 789999999952 59999999999 999999999999999999999999999999999999986532 2467899
Q ss_pred EEccCCcCcc-ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCE
Q 020527 160 FVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI 238 (325)
Q Consensus 160 ~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~l 238 (325)
|+||++.+|+ .||+||+.++... ..... . ...+.++++.+...........+|||||||||+|||||+.+|++
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~~-~~~~~---~--~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~l 147 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLRN-VERVE---R--DRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRL 147 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTT-SCHHH---H--HHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSS
T ss_pred EEcCCCccCCCCcHHHHHHHHHHH-cCCch---H--HHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 9999998885 6999999986421 11111 0 11233445554432222233467999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhhcC
Q 020527 239 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHKG 310 (325)
Q Consensus 239 lllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~~ 310 (325)
|||||||++||+.+++.+.+.|++++++ .|+|||++|||++.+. .||++++|++|++++.|+++++++..
T Consensus 148 llLDEPts~LD~~~~~~~~~~l~~l~~~--~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 218 (240)
T 2onk_A 148 LLLDEPLSAVDLKTKGVLMEELRFVQRE--FDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp BEEESTTSSCCHHHHHHHHHHHHHHHHH--HTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 9999999999999999999999998642 3789999999999885 59999999999999999999987653
No 41
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=1.7e-54 Score=392.72 Aligned_cols=210 Identities=21% Similarity=0.325 Sum_probs=181.9
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
+|+++||+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|+ |+|.++|+++...+...+++++
T Consensus 4 ~l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i 75 (249)
T 2qi9_C 4 VMQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHR 75 (249)
T ss_dssp EEEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHE
T ss_pred EEEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceE
Confidence 4899999986 3899999999999999999999999999999999999999 9999999998777777778889
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC
Q 020527 159 GFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 237 (325)
Q Consensus 159 ~~v~Q~~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ 237 (325)
+|+||++.+| ..||+||+.++.......+.+.++++.+++.+++++. ..+|||||||||+|||||+.+|+
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LSgGq~qrv~lAraL~~~p~ 146 (249)
T 2qi9_C 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRS---------TNQLSGGEWQRVRLAAVVLQITP 146 (249)
T ss_dssp EEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSB---------GGGCCHHHHHHHHHHHHHHHHCT
T ss_pred EEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCC---------hhhCCHHHHHHHHHHHHHHcCCC
Confidence 9999999887 4799999998632222244455566665554433322 35799999999999999999999
Q ss_pred -------EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHHhh
Q 020527 238 -------ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLH 308 (325)
Q Consensus 238 -------llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~ 308 (325)
+|||||||++||+.++..+.+.|+++++ +|+|||++|||++.+. .||++++|++|++++.|+++++++
T Consensus 147 ~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~---~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 147 QANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQ---QGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp TTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred cCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999964 3789999999999985 599999999999999999999875
No 42
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=1.9e-54 Score=392.98 Aligned_cols=216 Identities=24% Similarity=0.305 Sum_probs=170.0
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcC--CCCCCCeEEECCEeCCCCCHHHH-h
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWL-R 155 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl--~~~~~G~I~i~g~~i~~~~~~~~-r 155 (325)
+|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++...+.... +
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~ 79 (250)
T 2d2e_A 3 QLEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERAR 79 (250)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHh
Confidence 5899999999964 3699999999999999999999999999999999999 89999999999999977665543 4
Q ss_pred cceEEEccCCcCcc-ccHHHHHhcCCC---C-CCCHHHHHHHHHHcCHHHHHHhCCCC-cccccCCCC-CChHHHHHHHH
Q 020527 156 EKIGFVGQEPQLLQ-MDIKSNIMYGCP---K-DVKNEDIEWAAKQAYVHEFILSLPCG-YETLVDDDL-LSGGQKQRIAI 228 (325)
Q Consensus 156 ~~i~~v~Q~~~l~~-~tv~enl~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-LSgGq~QRv~i 228 (325)
..++|+||++.+|+ .||+||+.++.. . ........ ..+.++++.+... ........+ |||||||||+|
T Consensus 80 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~i 154 (250)
T 2d2e_A 80 KGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFW-----TKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEI 154 (250)
T ss_dssp TTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHH-----HHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHH
T ss_pred CcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHH-----HHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHH
Confidence 56999999999885 799999976421 0 01111100 1122333333221 111222356 99999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh--cCEEEEEeCCEEEEEcChHH
Q 020527 229 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIVVIDDGRIIEVGNHAE 305 (325)
Q Consensus 229 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~--~d~v~~l~~G~i~~~g~~~~ 305 (325)
||||+.+|++|||||||++||+.++..+.+.|+++++ .|+|||+||||++.+.. ||++++|++|++++.|+++.
T Consensus 155 AraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~---~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 155 LQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG---PNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp HHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS---TTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred HHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh---cCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 9999999999999999999999999999999999853 48899999999999875 59999999999999999873
No 43
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.6e-53 Score=390.35 Aligned_cols=218 Identities=26% Similarity=0.316 Sum_probs=176.5
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcC--CCCCCCeEEECCEeCCCCCHHHH-h
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWL-R 155 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl--~~~~~G~I~i~g~~i~~~~~~~~-r 155 (325)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++...+.... +
T Consensus 20 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 20 MLSIKDLHVSVED---KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 5999999999964 3699999999999999999999999999999999999 57899999999999876665444 4
Q ss_pred cceEEEccCCcCc-cccHHHHHhcCC--------CCCCCHHHHHHHHHHcCHHHHHHhCCCC-cccccCCC-CCChHHHH
Q 020527 156 EKIGFVGQEPQLL-QMDIKSNIMYGC--------PKDVKNEDIEWAAKQAYVHEFILSLPCG-YETLVDDD-LLSGGQKQ 224 (325)
Q Consensus 156 ~~i~~v~Q~~~l~-~~tv~enl~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~LSgGq~Q 224 (325)
+.|+|+||++.+| ..|+.||+.++. ......+.. ...+.++++.+... ........ +|||||||
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~Q 171 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDF-----QDLMEEKIALLKMPEDLLTRSVNVGFSGGEKK 171 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHH-----HHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHH
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHH-----HHHHHHHHHHcCCChhHhcCCcccCCCHHHHH
Confidence 5699999999888 479999986531 000111111 11233455554332 11122233 59999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh--cCEEEEEeCCEEEEEcC
Q 020527 225 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIVVIDDGRIIEVGN 302 (325)
Q Consensus 225 Rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~--~d~v~~l~~G~i~~~g~ 302 (325)
||+|||||+.+|++|||||||++||+.++..+.+.|+++++ +|+|||++|||++.+.. ||++++|++|++++.|+
T Consensus 172 Rv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~---~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~ 248 (267)
T 2zu0_C 172 RNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD---GKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGD 248 (267)
T ss_dssp HHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC---SSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---cCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcC
Confidence 99999999999999999999999999999999999998853 48899999999998864 89999999999999999
Q ss_pred hHHHh
Q 020527 303 HAELL 307 (325)
Q Consensus 303 ~~~l~ 307 (325)
++++.
T Consensus 249 ~~~~~ 253 (267)
T 2zu0_C 249 FTLVK 253 (267)
T ss_dssp TTHHH
T ss_pred HHHHh
Confidence 98764
No 44
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=4.5e-53 Score=384.40 Aligned_cols=203 Identities=26% Similarity=0.409 Sum_probs=170.3
Q ss_pred cEEEEEEEEECC-CCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 020527 79 HVQFVNISFHYP-SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 157 (325)
Q Consensus 79 ~i~~~~v~~~y~-~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~ 157 (325)
+|+++||+++|+ + .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|. ++++
T Consensus 4 ~l~i~~l~~~y~~~---~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~ 67 (253)
T 2nq2_C 4 ALSVENLGFYYQAE---NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQS 67 (253)
T ss_dssp EEEEEEEEEEETTT---TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSC
T ss_pred eEEEeeEEEEeCCC---CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------Eecc
Confidence 489999999997 4 3699999999999999999999999999999999999999999998 2467
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCCCC------CCH---HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 020527 158 IGFVGQEPQLL-QMDIKSNIMYGCPKD------VKN---EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 227 (325)
Q Consensus 158 i~~v~Q~~~l~-~~tv~enl~~~~~~~------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~ 227 (325)
|+|+||++.++ ..||+||+.++.... ... +.+.++++.+++.++.++ ...+|||||||||+
T Consensus 68 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LSgGq~qrv~ 138 (253)
T 2nq2_C 68 IGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKR---------EFTSLSGGQRQLIL 138 (253)
T ss_dssp EEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTS---------BGGGSCHHHHHHHH
T ss_pred EEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcC---------ChhhCCHHHHHHHH
Confidence 99999999887 689999998863110 111 223334444443332222 23679999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcCEEEEEeCCEEEEEcChHHH
Q 020527 228 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAEL 306 (325)
Q Consensus 228 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l 306 (325)
|||||+.+|++|||||||++||+.++..+.+.|++++++ .|+|||++|||++.+. .||++++|++|+ ++.|+++++
T Consensus 139 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~--~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~ 215 (253)
T 2nq2_C 139 IARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQS--QNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNI 215 (253)
T ss_dssp HHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHT--SCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHH
Confidence 999999999999999999999999999999999999753 3789999999999985 599999999999 999999998
Q ss_pred hhc
Q 020527 307 LHK 309 (325)
Q Consensus 307 ~~~ 309 (325)
++.
T Consensus 216 ~~~ 218 (253)
T 2nq2_C 216 LTS 218 (253)
T ss_dssp CCH
T ss_pred hCc
Confidence 653
No 45
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2e-52 Score=381.99 Aligned_cols=208 Identities=21% Similarity=0.299 Sum_probs=174.2
Q ss_pred EEEEEEEEECCCC-CCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 80 VQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 80 i~~~~v~~~y~~~-~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
|+++|++++|++. ..+++|+|+||+|+ ||+++|+||||||||||+|+|+|++ |++|+|.++|+++... .. ++++
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999641 00359999999999 9999999999999999999999999 9999999999988643 23 6789
Q ss_pred E-EEccCCcCccccHHHHHhcCCC-CCCCHHHHHHHHHHcCHH-HHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 020527 159 G-FVGQEPQLLQMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 235 (325)
Q Consensus 159 ~-~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~ 235 (325)
+ |+||++.+ ..||+||+.++.. .....+.+.++++..++. +..++ ...+||||||||++|||||+.+
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~---------~~~~LSgGqkqRv~lAraL~~~ 146 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRR---------KLYKLSAGQSVLVRTSLALASQ 146 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGS---------BGGGSCHHHHHHHHHHHHHHTC
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcC---------ChhhCCHHHHHHHHHHHHHHhC
Confidence 9 99999988 8999999987421 122234444555554443 32222 2367999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHH-hcC-EEEEEeCCEEEEEcChHHHhh
Q 020527 236 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVD-RIVVIDDGRIIEVGNHAELLH 308 (325)
Q Consensus 236 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~-~~d-~v~~l~~G~i~~~g~~~~l~~ 308 (325)
|++|||||||++||+.++..+.+.|++++ . |||++|||++.+. .|| ++++|++|++++.|+++++++
T Consensus 147 p~lllLDEPts~LD~~~~~~l~~~L~~~~-----~-tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 147 PEIVGLDEPFENVDAARRHVISRYIKEYG-----K-EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHSC-----S-EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred CCEEEEECCccccCHHHHHHHHHHHHHhc-----C-cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999999998873 2 9999999999986 499 999999999999999999874
No 46
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=2.7e-51 Score=379.37 Aligned_cols=211 Identities=27% Similarity=0.445 Sum_probs=170.4
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.|+++||++.+ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| +|
T Consensus 40 ~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~i 101 (290)
T 2bbs_A 40 SLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI 101 (290)
T ss_dssp ----------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------CE
T ss_pred eEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------EE
Confidence 59999999864 2599999999999999999999999999999999999999999999988 49
Q ss_pred EEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCC
Q 020527 159 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDP 236 (325)
Q Consensus 159 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p 236 (325)
+|+||++.+|+.||+||+. +.. .........++..++.+.++.++.+..+..+ ..+||||||||++|||||+.+|
T Consensus 102 ~~v~Q~~~l~~~tv~enl~-~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p 178 (290)
T 2bbs_A 102 SFCSQNSWIMPGTIKENII-GVS--YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA 178 (290)
T ss_dssp EEECSSCCCCSSBHHHHHH-TTC--CCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCC
T ss_pred EEEeCCCccCcccHHHHhh-Ccc--cchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCC
Confidence 9999999998889999998 532 2233444566667888888887766554443 3689999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHH-HHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHH
Q 020527 237 AILLLDEATSALDSESEHYVKGVL-HALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYA 314 (325)
Q Consensus 237 ~llllDEPts~LD~~~~~~i~~~l-~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~ 314 (325)
++|||||||++||+.++..+.+.+ +++. .|+|||++|||++.+..||++++|++|++++.|++++++.....|.
T Consensus 179 ~lllLDEPts~LD~~~~~~i~~~ll~~~~----~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 253 (290)
T 2bbs_A 179 DLYLLDSPFGYLDVLTEKEIFESCVCKLM----ANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPDFS 253 (290)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHCCCCCT----TTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHHHCHHHH
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHhh----CCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhhhcHHHH
Confidence 999999999999999999998864 4442 3789999999999887799999999999999999999876443343
No 47
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=8.7e-52 Score=366.82 Aligned_cols=196 Identities=23% Similarity=0.371 Sum_probs=161.5
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.|+++||+++|++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. .+++.|
T Consensus 10 ~l~~~~ls~~y~~----~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i 80 (214)
T 1sgw_A 10 KLEIRDLSVGYDK----PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 80 (214)
T ss_dssp EEEEEEEEEESSS----EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred eEEEEEEEEEeCC----eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcE
Confidence 5999999999963 5999999999999999999999999999999999999999999999999875 257789
Q ss_pred EEEccCCcCcc-ccHHHHHhcCCC--C-CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 020527 159 GFVGQEPQLLQ-MDIKSNIMYGCP--K-DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 234 (325)
Q Consensus 159 ~~v~Q~~~l~~-~tv~enl~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~ 234 (325)
+|+||++.+|+ .||+||+.++.. . ....+.+.++++.+++.+. .....+||||||||++|||||+.
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~LSgGqkqrv~laraL~~ 150 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL----------KKKLGELSQGTIRRVQLASTLLV 150 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT----------TSBGGGSCHHHHHHHHHHHHTTS
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC----------CCChhhCCHHHHHHHHHHHHHHh
Confidence 99999998885 699999987421 1 1123344444444433221 22236799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEE
Q 020527 235 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 297 (325)
Q Consensus 235 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i 297 (325)
+|++|||||||++||+.++..+.+.|+++++ .|+|||++|||++.+.. ||+++++ +|+|
T Consensus 151 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~---~g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 151 NAEIYVLDDPVVAIDEDSKHKVLKSILEILK---EKGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp CCSEEEEESTTTTSCTTTHHHHHHHHHHHHH---HHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 9999999999999999999999999999864 27899999999999876 7887644 5655
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=4.3e-44 Score=361.19 Aligned_cols=203 Identities=27% Similarity=0.292 Sum_probs=164.8
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.++++|++++|++ ..|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+ +.+|
T Consensus 357 ~l~~~~l~~~~~~----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i 419 (607)
T 3bk7_A 357 LVEYPRLVKDYGS----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTV 419 (607)
T ss_dssp EEEECCEEEECSS----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCE
T ss_pred EEEEeceEEEecc----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEE
Confidence 5999999999964 3799999999999999999999999999999999999999999976 2469
Q ss_pred EEEccCCcCc-cccHHHHHhcC-CCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 020527 159 GFVGQEPQLL-QMDIKSNIMYG-CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 236 (325)
Q Consensus 159 ~~v~Q~~~l~-~~tv~enl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p 236 (325)
+|+||++.++ ..||.||+... .......+.+.++ ++.+...........+|||||||||+|||||+++|
T Consensus 420 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~---------l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p 490 (607)
T 3bk7_A 420 AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTEL---------LKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDA 490 (607)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHT---------HHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCC
T ss_pred EEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHH---------HHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 9999998764 68999998652 0000011122223 33322221122223679999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeC--CEEEEEcChHHHhhc
Q 020527 237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD--GRIIEVGNHAELLHK 309 (325)
Q Consensus 237 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~--G~i~~~g~~~~l~~~ 309 (325)
++|||||||++||+.++..+.++|+++.++ .|.|||+||||++++.. ||||++|++ |+++..|+|+++++.
T Consensus 491 ~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~~ 564 (607)
T 3bk7_A 491 DIYLLDEPSAYLDVEQRLAVSRAIRHLMEK--NEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMREG 564 (607)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHH
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHhh
Confidence 999999999999999999999999998643 47899999999999865 999999986 888889999888753
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=3.9e-44 Score=357.50 Aligned_cols=203 Identities=28% Similarity=0.313 Sum_probs=163.9
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.++++|+++.|++ ..|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+ +.+|
T Consensus 287 ~l~~~~l~~~~~~----~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i 349 (538)
T 1yqt_A 287 LVTYPRLVKDYGS----FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTV 349 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCE
T ss_pred EEEEeeEEEEECC----EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceE
Confidence 5999999999964 3799999999999999999999999999999999999999999975 2369
Q ss_pred EEEccCCcC-ccccHHHHHhcC-CCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 020527 159 GFVGQEPQL-LQMDIKSNIMYG-CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 236 (325)
Q Consensus 159 ~~v~Q~~~l-~~~tv~enl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p 236 (325)
+|+||++.. +..||.|++... .......+.+ .++++.+...........+|||||||||+|||||+.+|
T Consensus 350 ~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~---------~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p 420 (538)
T 1yqt_A 350 AYKPQYIKADYEGTVYELLSKIDASKLNSNFYK---------TELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDA 420 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHH---------HHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCC
T ss_pred EEEecCCcCCCCCcHHHHHHhhhccCCCHHHHH---------HHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 999999876 468999987642 0000011112 22333332221112223679999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeC--CEEEEEcChHHHhhc
Q 020527 237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD--GRIIEVGNHAELLHK 309 (325)
Q Consensus 237 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~--G~i~~~g~~~~l~~~ 309 (325)
++|||||||++||+.++..+.++|+++.++ .|.|||+||||++++.. ||||++|++ |+++..|+|+++++.
T Consensus 421 ~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~--~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~~ 494 (538)
T 1yqt_A 421 DIYLLDEPSAYLDVEQRLAVSRAIRHLMEK--NEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMREG 494 (538)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHHH--HTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHhh
Confidence 999999999999999999999999998642 37899999999999865 999999986 788889999888753
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.3e-43 Score=351.51 Aligned_cols=202 Identities=20% Similarity=0.277 Sum_probs=163.8
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.++++|+++.|++ ..|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ +.+
T Consensus 269 ~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~i 332 (538)
T 3ozx_A 269 KMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QIL 332 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CCE
T ss_pred eEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------eee
Confidence 5899999999964 368899999999999999999999999999999999999999998754 358
Q ss_pred EEEccCCcC-ccccHHHHHhcCCCCC--CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 020527 159 GFVGQEPQL-LQMDIKSNIMYGCPKD--VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 235 (325)
Q Consensus 159 ~~v~Q~~~l-~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~ 235 (325)
+|+||+... +..||++|+.+..... .......++++..++.+..++ ...+|||||||||+|||||+.+
T Consensus 333 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LSGGq~QRv~iAraL~~~ 403 (538)
T 3ozx_A 333 SYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLES---------NVNDLSGGELQKLYIAATLAKE 403 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTS---------BGGGCCHHHHHHHHHHHHHHSC
T ss_pred EeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcC---------ChhhCCHHHHHHHHHHHHHHcC
Confidence 999999765 4789999997632111 112223334444444332222 2367999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeC--CEEEEEcChHHHh
Q 020527 236 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD--GRIIEVGNHAELL 307 (325)
Q Consensus 236 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~--G~i~~~g~~~~l~ 307 (325)
|++|||||||++||+.++..+.++|+++.++ .|+|||+||||++++.. ||||++|++ |.+...+++.++.
T Consensus 404 p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~--~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 404 ADLYVLDQPSSYLDVEERYIVAKAIKRVTRE--RKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 9999999999999999999999999999753 48899999999999875 999999986 5566667766554
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-41 Score=342.79 Aligned_cols=202 Identities=22% Similarity=0.321 Sum_probs=161.7
Q ss_pred EEEEEECCCCCCCCceeeeeEEeeCC-----cEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 020527 83 VNISFHYPSRPTVPILNHVCLTIEAN-----EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 157 (325)
Q Consensus 83 ~~v~~~y~~~~~~~iL~~isl~i~~G-----e~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~ 157 (325)
++++++|++. ..+++++||++.+| |+++|+||||||||||+|+|+|+++|++|+. +. +..
T Consensus 350 ~~~~~~y~~~--~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~ 414 (608)
T 3j16_B 350 ASRAFSYPSL--KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLN 414 (608)
T ss_dssp SSSCCEECCE--EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCC
T ss_pred cceeEEecCc--ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCc
Confidence 5567778642 35889999999999 8899999999999999999999999999962 11 346
Q ss_pred eEEEccCCcC-ccccHHHHHhcCCCC-CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 020527 158 IGFVGQEPQL-LQMDIKSNIMYGCPK-DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 235 (325)
Q Consensus 158 i~~v~Q~~~l-~~~tv~enl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~ 235 (325)
++|+||+... |..||++|+...... ........++++..++.+. ......+|||||||||+|||||+.+
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~---------~~~~~~~LSGGqkQRv~iAraL~~~ 485 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDI---------IDQEVQHLSGGELQRVAIVLALGIP 485 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTT---------SSSBSSSCCHHHHHHHHHHHHTTSC
T ss_pred EEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhh---------hcCChhhCCHHHHHHHHHHHHHHhC
Confidence 9999999765 578999998643211 1223333334444443322 2223468999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeC--CEEEEEcChHHHhhcC
Q 020527 236 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD--GRIIEVGNHAELLHKG 310 (325)
Q Consensus 236 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~--G~i~~~g~~~~l~~~~ 310 (325)
|++|||||||+|||+.++..+.++|+++.++ .|+|||+||||++++.. ||||++|++ |+++..|+|+++++..
T Consensus 486 p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~--~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~ 561 (608)
T 3j16_B 486 ADIYLIDEPSAYLDSEQRIICSKVIRRFILH--NKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTGC 561 (608)
T ss_dssp CSEEEECCTTTTCCHHHHHHHHHHHHHHHHH--HTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhhh
Confidence 9999999999999999999999999998642 48899999999999865 999999996 8999999999998763
No 52
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=2.9e-41 Score=345.37 Aligned_cols=209 Identities=23% Similarity=0.352 Sum_probs=137.3
Q ss_pred CceeeeeEEeeCCcEEEEEcCCCChHHHHH---------------------HHHHcCCCCC-------CCeEEECCEeCC
Q 020527 96 PILNHVCLTIEANEVVAIVGLSGSGKSTFV---------------------NLLLRLYEPS-------DGQIYIDGFPLT 147 (325)
Q Consensus 96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl---------------------~~l~gl~~~~-------~G~I~i~g~~i~ 147 (325)
.+|+||||+|++||+++|+||||||||||+ +++.|+.+|+ .|.|.++|.+..
T Consensus 32 ~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~ 111 (670)
T 3ux8_A 32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTS 111 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC--
T ss_pred cceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhh
Confidence 599999999999999999999999999998 9999999998 455666665443
Q ss_pred CCCHHHHhcceEEEccCCcC-------------------c-cccHHHHHhcCCCCCCC--HHHHHHH-HH-HcCHHHHHH
Q 020527 148 DLDIRWLREKIGFVGQEPQL-------------------L-QMDIKSNIMYGCPKDVK--NEDIEWA-AK-QAYVHEFIL 203 (325)
Q Consensus 148 ~~~~~~~r~~i~~v~Q~~~l-------------------~-~~tv~enl~~~~~~~~~--~~~~~~~-~~-~~~~~~~~~ 203 (325)
.. .++.+++++|.+.+ + .+||+||+.+....... ....... .+ .....++++
T Consensus 112 ~~----~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 187 (670)
T 3ux8_A 112 RN----PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQ 187 (670)
T ss_dssp -------CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHH
T ss_pred cc----chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHH
Confidence 21 23445555554322 2 46899999764211100 0000000 00 001112345
Q ss_pred hCCCCcc-cccCCCCCChHHHHHHHHHHHHcCCCC--EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCc
Q 020527 204 SLPCGYE-TLVDDDLLSGGQKQRIAIARAILRDPA--ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL 280 (325)
Q Consensus 204 ~~~~~~~-~~~~~~~LSgGq~QRv~iAral~~~p~--llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~ 280 (325)
.+..... ......+|||||||||+|||||+.+|+ +|||||||++||+.++..+.++|+++++ .|.|||+||||+
T Consensus 188 ~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~---~g~tvi~vtHd~ 264 (670)
T 3ux8_A 188 NVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD---LGNTLIVVEHDE 264 (670)
T ss_dssp HTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHH---TTCEEEEECCCH
T ss_pred HcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCH
Confidence 4443321 123346799999999999999999998 9999999999999999999999999975 388999999999
Q ss_pred hHHHhcCEEEEE------eCCEEEEEcChHHHhhcCH
Q 020527 281 STIKAVDRIVVI------DDGRIIEVGNHAELLHKGR 311 (325)
Q Consensus 281 ~~~~~~d~v~~l------~~G~i~~~g~~~~l~~~~~ 311 (325)
+.+..||+|++| ++|++++.|+++++.+...
T Consensus 265 ~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~ 301 (670)
T 3ux8_A 265 DTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPN 301 (670)
T ss_dssp HHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHTCTT
T ss_pred HHHhhCCEEEEecccccccCCEEEEecCHHHHhcCch
Confidence 988779999999 8999999999999987643
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1e-41 Score=343.85 Aligned_cols=198 Identities=25% Similarity=0.265 Sum_probs=155.8
Q ss_pred cEEE--------EEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeE---------EE
Q 020527 79 HVQF--------VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI---------YI 141 (325)
Q Consensus 79 ~i~~--------~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I---------~i 141 (325)
.|++ +||+++|++. ..+|+++| +|++||+++|+||||||||||+|+|+|+++|++|++ .+
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~ 159 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVN--AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAF 159 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHT
T ss_pred eEEEecCCccccCCeEEEECCC--CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhhee
Confidence 4788 8999999753 24899999 999999999999999999999999999999999996 34
Q ss_pred CCEeCCCCCHH--HHhcceEEEccCCcC----ccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC
Q 020527 142 DGFPLTDLDIR--WLREKIGFVGQEPQL----LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD 215 (325)
Q Consensus 142 ~g~~i~~~~~~--~~r~~i~~v~Q~~~l----~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (325)
+|.++...... ..+..+++++|.... +..|++||+.... ..+.+.++++.+++.+..++. .
T Consensus 160 ~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~----~~~~~~~~L~~lgL~~~~~~~---------~ 226 (607)
T 3bk7_A 160 RGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD----EVGKFEEVVKELELENVLDRE---------L 226 (607)
T ss_dssp TTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTC----CSSCHHHHHHHTTCTTGGGSB---------G
T ss_pred CCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhH----HHHHHHHHHHHcCCCchhCCC---------h
Confidence 55443211111 123468899997543 3359999986521 112344455555554333332 3
Q ss_pred CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeC
Q 020527 216 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD 294 (325)
Q Consensus 216 ~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~ 294 (325)
.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|+++.+ .|.|||+||||++.+.. ||||++|++
T Consensus 227 ~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~---~g~tvIivsHdl~~~~~~adri~vl~~ 303 (607)
T 3bk7_A 227 HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN---EGKAVLVVEHDLAVLDYLSDVIHVVYG 303 (607)
T ss_dssp GGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHCSEEEEEES
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh---cCCEEEEEecChHHHHhhCCEEEEECC
Confidence 67999999999999999999999999999999999999999999999975 38899999999999865 999999986
Q ss_pred C
Q 020527 295 G 295 (325)
Q Consensus 295 G 295 (325)
+
T Consensus 304 ~ 304 (607)
T 3bk7_A 304 E 304 (607)
T ss_dssp C
T ss_pred C
Confidence 4
No 54
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=8.9e-42 Score=340.52 Aligned_cols=197 Identities=24% Similarity=0.255 Sum_probs=150.2
Q ss_pred EEE-EEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeE---------EECCEeCCCC
Q 020527 80 VQF-VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI---------YIDGFPLTDL 149 (325)
Q Consensus 80 i~~-~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I---------~i~g~~i~~~ 149 (325)
.++ +||+|+|++. ..+|+++| +|++||+++|+||||||||||+|+|+|+++|++|++ .++|.++...
T Consensus 21 ~~~~~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~ 97 (538)
T 1yqt_A 21 EQLEEDCVHRYGVN--AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNY 97 (538)
T ss_dssp ---CCCEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHH
T ss_pred hhHhcCcEEEECCc--cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHH
Confidence 355 5999999753 24899999 999999999999999999999999999999999995 3455443211
Q ss_pred CHH--HHhcceEEEccCCcCc----cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHH
Q 020527 150 DIR--WLREKIGFVGQEPQLL----QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK 223 (325)
Q Consensus 150 ~~~--~~r~~i~~v~Q~~~l~----~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~ 223 (325)
... ..+..+++++|...++ ..|+.+|+..... .+++.++++.+++... ......+||||||
T Consensus 98 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~----~~~~~~~l~~lgl~~~---------~~~~~~~LSgGek 164 (538)
T 1yqt_A 98 FEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADE----TGKLEEVVKALELENV---------LEREIQHLSGGEL 164 (538)
T ss_dssp HHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCS----SSCHHHHHHHTTCTTT---------TTSBGGGCCHHHH
T ss_pred HHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhH----HHHHHHHHHHcCCChh---------hhCChhhCCHHHH
Confidence 011 1124689999976443 2489998854210 1223344444444322 1222367999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCC
Q 020527 224 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG 295 (325)
Q Consensus 224 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G 295 (325)
|||+|||||+.+|++|||||||++||+.++..+.+.|+++++ .|+|||+||||++++.. ||||++|++|
T Consensus 165 QRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~---~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 165 QRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE---EGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 999999999999999999999999999999999999999975 38899999999999865 9999999864
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=1.3e-40 Score=347.57 Aligned_cols=197 Identities=25% Similarity=0.426 Sum_probs=146.9
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.|+++|++|+|++. .+++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|. .+|
T Consensus 671 mL~v~nLs~~Y~g~-~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I 738 (986)
T 2iw3_A 671 IVKVTNMEFQYPGT-SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRI 738 (986)
T ss_dssp EEEEEEEEECCTTC-SSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCE
T ss_pred eEEEEeeEEEeCCC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cce
Confidence 59999999999752 246999999999999999999999999999999999999999999999862 135
Q ss_pred EEEccCCcC-----ccccHHHHHh--------------------------------------------------------
Q 020527 159 GFVGQEPQL-----LQMDIKSNIM-------------------------------------------------------- 177 (325)
Q Consensus 159 ~~v~Q~~~l-----~~~tv~enl~-------------------------------------------------------- 177 (325)
+|++|++.. +..|+.+++.
T Consensus 739 ~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e 818 (986)
T 2iw3_A 739 AYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYE 818 (986)
T ss_dssp EEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEE
T ss_pred EeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhh
Confidence 666665421 1223333332
Q ss_pred ----------cCC----------------------------------------CCCCCHHHHHHHHHHcCHHHHHHhCCC
Q 020527 178 ----------YGC----------------------------------------PKDVKNEDIEWAAKQAYVHEFILSLPC 207 (325)
Q Consensus 178 ----------~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (325)
++. ......+. +.+.++.+..
T Consensus 819 ~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~---------i~~~Le~lGL 889 (986)
T 2iw3_A 819 CSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKE---------IEEHCSMLGL 889 (986)
T ss_dssp EEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHH---------HHHHHHHTTC
T ss_pred hhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHH---------HHHHHHHcCC
Confidence 110 00001112 2333444332
Q ss_pred Ccc--cccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh
Q 020527 208 GYE--TLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA 285 (325)
Q Consensus 208 ~~~--~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~ 285 (325)
... ......+|||||||||+|||||+.+|++|||||||++||+.+...+.+.|+++ +.|||+||||++++..
T Consensus 890 ~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~------g~tVIiISHD~e~v~~ 963 (986)
T 2iw3_A 890 DPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF------EGGVIIITHSAEFTKN 963 (986)
T ss_dssp CHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC------SSEEEEECSCHHHHTT
T ss_pred CchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh------CCEEEEEECCHHHHHH
Confidence 111 11223579999999999999999999999999999999999999888888654 4599999999999865
Q ss_pred -cCEEEEEeCCEEEEEcC
Q 020527 286 -VDRIVVIDDGRIIEVGN 302 (325)
Q Consensus 286 -~d~v~~l~~G~i~~~g~ 302 (325)
||++++|++|+++..|+
T Consensus 964 l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 964 LTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp TCCEEECCBTTBCCC---
T ss_pred hCCEEEEEECCEEEEeCC
Confidence 99999999999987664
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=2.8e-38 Score=330.08 Aligned_cols=196 Identities=27% Similarity=0.378 Sum_probs=160.9
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.+...|++++|+++ .+|+|+||+|++||+++|+||||||||||+|+|+| |+| +|.+... +.++
T Consensus 435 ~L~~~~ls~~yg~~---~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~~ 497 (986)
T 2iw3_A 435 DLCNCEFSLAYGAK---ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECRT 497 (986)
T ss_dssp EEEEEEEEEEETTE---EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSCE
T ss_pred eeEEeeEEEEECCE---EeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------ceeE
Confidence 47788999999753 69999999999999999999999999999999996 544 4543211 1247
Q ss_pred EEEccCC-cCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCH-HHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 020527 159 GFVGQEP-QLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYV-HEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 235 (325)
Q Consensus 159 ~~v~Q~~-~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~ 235 (325)
+|++|++ .++ ..|+.||+.+. .... .+++.+.++..++ .+..++.+ .+||||||||++|||||+.+
T Consensus 498 ~~v~q~~~~~~~~ltv~e~l~~~-~~~~-~~~v~~~L~~lgL~~~~~~~~~---------~~LSGGqkQRvaLArAL~~~ 566 (986)
T 2iw3_A 498 VYVEHDIDGTHSDTSVLDFVFES-GVGT-KEAIKDKLIEFGFTDEMIAMPI---------SALSGGWKMKLALARAVLRN 566 (986)
T ss_dssp EETTCCCCCCCTTSBHHHHHHTT-CSSC-HHHHHHHHHHTTCCHHHHHSBG---------GGCCHHHHHHHHHHHHHHTT
T ss_pred EEEcccccccccCCcHHHHHHHh-hcCH-HHHHHHHHHHcCCChhhhcCCc---------ccCCHHHHHHHHHHHHHhcC
Confidence 8999985 444 67999999862 1112 5566677777777 44555443 56999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEE-EEcChHHHhh
Q 020527 236 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII-EVGNHAELLH 308 (325)
Q Consensus 236 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~-~~g~~~~l~~ 308 (325)
|++|||||||++||+.++..+.+.|++ .|.|+|+||||++++.. ||+|++|++|+++ ..|++++++.
T Consensus 567 P~lLLLDEPTs~LD~~~~~~l~~~L~~------~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 567 ADILLLDEPTNHLDTVNVAWLVNYLNT------CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHH------SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHh------CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 999999999999999999999999986 16799999999999865 9999999999997 5899988764
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=3.3e-39 Score=330.16 Aligned_cols=201 Identities=31% Similarity=0.421 Sum_probs=146.1
Q ss_pred CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHH----------------------cCCCCCCCeEEECCEeCCCCCHHH
Q 020527 96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL----------------------RLYEPSDGQIYIDGFPLTDLDIRW 153 (325)
Q Consensus 96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~----------------------gl~~~~~G~I~i~g~~i~~~~~~~ 153 (325)
.+|+||||+|++||+++|+||||||||||+++|+ |+.+ .+|.|.+++.++...+...
T Consensus 336 ~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~-~~~~i~~~~~~~~~~~~~~ 414 (670)
T 3ux8_A 336 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEH-LDKVIDIDQSPIGRTPRSN 414 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGG-CSEEEECCSSCSCSSTTCC
T ss_pred cccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccc-cCceeEeccccCCCCCCcc
Confidence 5899999999999999999999999999998754 3333 3568889888775432100
Q ss_pred Hh-----------------------------------------cceEEEccCCcC-------------------------
Q 020527 154 LR-----------------------------------------EKIGFVGQEPQL------------------------- 167 (325)
Q Consensus 154 ~r-----------------------------------------~~i~~v~Q~~~l------------------------- 167 (325)
.. ...|+++|+..+
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (670)
T 3ux8_A 415 PATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTY 494 (670)
T ss_dssp HHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCB
T ss_pred hhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhheee
Confidence 00 011233332211
Q ss_pred --------ccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcc-cccCCCCCChHHHHHHHHHHHHcCCC--
Q 020527 168 --------LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYE-TLVDDDLLSGGQKQRIAIARAILRDP-- 236 (325)
Q Consensus 168 --------~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~LSgGq~QRv~iAral~~~p-- 236 (325)
+.+||+||+.+... . . .... ..+.+..+..... ......+|||||||||+|||||+.+|
T Consensus 495 ~~~~~~~~~~ltv~e~l~~~~~--~-~-~~~~------~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~ 564 (670)
T 3ux8_A 495 KGKNIAEVLDMTVEDALDFFAS--I-P-KIKR------KLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNG 564 (670)
T ss_dssp TTBCHHHHHTSBHHHHHHHTTT--C-H-HHHH------HHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCS
T ss_pred cCCCHHHHhhCCHHHHHHHHHH--h-h-hHHH------HHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCC
Confidence 14688888877521 1 1 1111 1123334333221 12234679999999999999999886
Q ss_pred -CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEE------eCCEEEEEcChHHHhhc
Q 020527 237 -AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLHK 309 (325)
Q Consensus 237 -~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l------~~G~i~~~g~~~~l~~~ 309 (325)
++|||||||++||+.++..+.++|+++++ .|+|||+||||++.+..||||++| ++|+|++.|+++++.+.
T Consensus 565 p~llllDEPt~~LD~~~~~~i~~~l~~l~~---~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~ 641 (670)
T 3ux8_A 565 RTLYILDEPTTGLHVDDIARLLDVLHRLVD---NGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEV 641 (670)
T ss_dssp CEEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHTC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHhC
Confidence 59999999999999999999999999975 388999999999988779999999 89999999999999765
Q ss_pred C
Q 020527 310 G 310 (325)
Q Consensus 310 ~ 310 (325)
.
T Consensus 642 ~ 642 (670)
T 3ux8_A 642 K 642 (670)
T ss_dssp T
T ss_pred C
Confidence 4
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.1e-39 Score=322.02 Aligned_cols=197 Identities=22% Similarity=0.297 Sum_probs=144.6
Q ss_pred EEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEE-----------ECCEeCCCCCHH
Q 020527 84 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY-----------IDGFPLTDLDIR 152 (325)
Q Consensus 84 ~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~-----------i~g~~i~~~~~~ 152 (325)
|++++|+.. ...|++++ .+++||+++|+||||||||||+|+|+|+++|++|+|. +.|.++..+...
T Consensus 82 ~~~~~Y~~~--~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~ 158 (608)
T 3j16_B 82 HVTHRYSAN--SFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTK 158 (608)
T ss_dssp TEEEECSTT--SCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHH
T ss_pred CeEEEECCC--ceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhH
Confidence 467888753 34677777 6999999999999999999999999999999999982 333222111111
Q ss_pred HHhcce--EEEccCCcCc-------cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHH
Q 020527 153 WLREKI--GFVGQEPQLL-------QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK 223 (325)
Q Consensus 153 ~~r~~i--~~v~Q~~~l~-------~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~ 223 (325)
.+.+.+ .+.+|....+ ..++.+++... .....+.+.++++.+++....++.+ .+||||||
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~--~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGe~ 227 (608)
T 3j16_B 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLR--MEKSPEDVKRYIKILQLENVLKRDI---------EKLSGGEL 227 (608)
T ss_dssp HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHH--CCSCHHHHHHHHHHHTCTGGGGSCT---------TTCCHHHH
T ss_pred HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhh--hhhHHHHHHHHHHHcCCcchhCCCh---------HHCCHHHH
Confidence 122222 2334432211 12566665442 1223455556666666544444333 67999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEE
Q 020527 224 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 297 (325)
Q Consensus 224 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i 297 (325)
|||+|||||+.+|++||||||||+||+.++..+.++++++++ .|+|||+||||++++.. ||||++|++|..
T Consensus 228 Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~---~g~tvi~vtHdl~~~~~~~drv~vl~~~~~ 299 (608)
T 3j16_B 228 QRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLA---PTKYVICVEHDLSVLDYLSDFVCIIYGVPS 299 (608)
T ss_dssp HHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGT---TTCEEEEECSCHHHHHHHCSEEEEEESCTT
T ss_pred HHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEeCCcc
Confidence 999999999999999999999999999999999999999974 47899999999999865 999999987653
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=7.7e-39 Score=318.93 Aligned_cols=192 Identities=20% Similarity=0.273 Sum_probs=142.2
Q ss_pred EEEEECCCCCCCCceeeeeEE-eeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeE-----------EECCEeCCCCCH
Q 020527 84 NISFHYPSRPTVPILNHVCLT-IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI-----------YIDGFPLTDLDI 151 (325)
Q Consensus 84 ~v~~~y~~~~~~~iL~~isl~-i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I-----------~i~g~~i~~~~~ 151 (325)
+++.+|+.+ -++-..+. +++||++||+||||||||||+|+|+|+++|++|+| .++|.++..+..
T Consensus 4 ~~~~~~~~~----~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~ 79 (538)
T 3ozx_A 4 EVIHRYKVN----GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFK 79 (538)
T ss_dssp CEEEESSTT----SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHH
T ss_pred CCceecCCC----ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHH
Confidence 567889754 35555554 45899999999999999999999999999999998 567765532111
Q ss_pred HHHh--cceEEEcc----CCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527 152 RWLR--EKIGFVGQ----EPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 225 (325)
Q Consensus 152 ~~~r--~~i~~v~Q----~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR 225 (325)
.... ..+...+| .+.++.+++.+++..... .+...++++..++....++ ...+||||||||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~----~~~~~~~l~~l~l~~~~~~---------~~~~LSgGe~Qr 146 (538)
T 3ozx_A 80 ELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDE----RGKKDEVKELLNMTNLWNK---------DANILSGGGLQR 146 (538)
T ss_dssp HHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHCC----SSCHHHHHHHTTCGGGTTS---------BGGGCCHHHHHH
T ss_pred HHhhcccchhhccchhhhhhhhccCcHHHHhhcchh----HHHHHHHHHHcCCchhhcC---------ChhhCCHHHHHH
Confidence 1111 12333343 344455688887753211 1223445555554333222 235799999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCE
Q 020527 226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR 296 (325)
Q Consensus 226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~ 296 (325)
|+|||||+.+|++||||||||+||+.++..+.++|++++ +|+|||+||||++++.. ||+|++|++|.
T Consensus 147 v~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~----~g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 147 LLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL----KNKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHC----TTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHh----CCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 999999999999999999999999999999999999984 27899999999999865 99999998753
No 60
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=7.1e-36 Score=311.38 Aligned_cols=209 Identities=30% Similarity=0.423 Sum_probs=149.7
Q ss_pred CceeeeeEEeeCCcEEEEEcCCCChHHHHH---------HHHHcCCCCC------CC------eEEECCEeCCCCC---H
Q 020527 96 PILNHVCLTIEANEVVAIVGLSGSGKSTFV---------NLLLRLYEPS------DG------QIYIDGFPLTDLD---I 151 (325)
Q Consensus 96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl---------~~l~gl~~~~------~G------~I~i~g~~i~~~~---~ 151 (325)
..|+||||+|++|++++|+||||||||||+ +++.+...+. +| .+.++..++.... +
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 479999999999999999999999999997 4444443333 23 2455554443211 0
Q ss_pred H-------HH-------------------------------hcceEEEccCCcCcc------------------------
Q 020527 152 R-------WL-------------------------------REKIGFVGQEPQLLQ------------------------ 169 (325)
Q Consensus 152 ~-------~~-------------------------------r~~i~~v~Q~~~l~~------------------------ 169 (325)
. .. .+..|+++++..+++
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 0 00 123577777665432
Q ss_pred ---------ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccc-ccCCCCCChHHHHHHHHHHHHcCCC---
Q 020527 170 ---------MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET-LVDDDLLSGGQKQRIAIARAILRDP--- 236 (325)
Q Consensus 170 ---------~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~LSgGq~QRv~iAral~~~p--- 236 (325)
+||.|++.|... . . .. ....+.++.+..++.. .....+|||||||||+|||||+++|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~--~-~-~~------~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p 827 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKN--I-P-SI------KRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGR 827 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTT--C-H-HH------HHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSS
T ss_pred cCCHHHHhhCCHHHHHHHHhc--c-h-hH------HHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCC
Confidence 345555544211 0 0 00 1122344444444322 2234689999999999999999875
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEE------eCCEEEEEcChHHHhhcC
Q 020527 237 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLHKG 310 (325)
Q Consensus 237 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l------~~G~i~~~g~~~~l~~~~ 310 (325)
+||||||||+|||+.+++.+++.|+++.+ .|.|||+||||++++..||+|++| ++|+|++.|+|+++++..
T Consensus 828 ~LLILDEPTsGLD~~~~~~L~~lL~~L~~---~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~ 904 (916)
T 3pih_A 828 TLYILDEPTVGLHFEDVRKLVEVLHRLVD---RGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNP 904 (916)
T ss_dssp EEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSCT
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhCC
Confidence 79999999999999999999999999975 488999999999999889999999 899999999999999876
Q ss_pred HHHHHHH
Q 020527 311 RLYAKLV 317 (325)
Q Consensus 311 ~~~~~~~ 317 (325)
..|...+
T Consensus 905 ~syt~~~ 911 (916)
T 3pih_A 905 HSYTGRF 911 (916)
T ss_dssp TCHHHHH
T ss_pred chHHHHH
Confidence 6665443
No 61
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=100.00 E-value=1e-40 Score=309.84 Aligned_cols=241 Identities=14% Similarity=0.154 Sum_probs=188.1
Q ss_pred HHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccccCCcccEEEEEEE
Q 020527 7 GMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNIS 86 (325)
Q Consensus 7 ~~~v~~g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~ 86 (325)
+|-+..+..+-+.+++|+.+..+ ..++..++..+..++++..+.+|+.++++.+++..... .......+.|+++||+
T Consensus 32 a~~~a~~~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~--~~~~~~~~~i~~~~vs 108 (305)
T 2v9p_A 32 AYEYALAAGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGE--GSWKSILTFFNYQNIE 108 (305)
T ss_dssp HHHHHHTTTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSS--CCTHHHHHHHHHTTCC
T ss_pred HHHHHHhcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC--CcccccCCeEEEEEEE
Confidence 34556667778888889888666 47899999999999999999999999998754321111 1111112248899999
Q ss_pred EECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCc
Q 020527 87 FHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQ 166 (325)
Q Consensus 87 ~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 166 (325)
|+|+ .++|+++||+|++|++++|+||||||||||+++|+|++ +|+| ++|++|++.
T Consensus 109 ~~y~----~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~ 163 (305)
T 2v9p_A 109 LITF----INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSH 163 (305)
T ss_dssp HHHH----HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSG
T ss_pred EEcC----hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCccc
Confidence 9996 25999999999999999999999999999999999999 8988 356899999
Q ss_pred CccccHHH-HHhcCCCCCCCHHHHHHHHHHcCHHHHHHh-CCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCC
Q 020527 167 LLQMDIKS-NIMYGCPKDVKNEDIEWAAKQAYVHEFILS-LPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEA 244 (325)
Q Consensus 167 l~~~tv~e-nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEP 244 (325)
+|..|+++ |+.++. ...+ .++++++. ++.+++ +..|||||||| ||||+++|+|||
T Consensus 164 lf~~ti~~~ni~~~~--~~~~----------~~~~~i~~~L~~gld----g~~LSgGqkQR---ARAll~~p~iLl---- 220 (305)
T 2v9p_A 164 FWLASLADTRAALVD--DATH----------ACWRYFDTYLRNALD----GYPVSIDRKHK---AAVQIKAPPLLV---- 220 (305)
T ss_dssp GGGGGGTTCSCEEEE--EECH----------HHHHHHHHTTTGGGG----TCCEECCCSSC---CCCEECCCCEEE----
T ss_pred cccccHHHHhhccCc--cccH----------HHHHHHHHHhHccCC----ccCcCHHHHHH---HHHHhCCCCEEE----
Confidence 99999997 998852 1221 22344554 554444 46799999999 999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHHH
Q 020527 245 TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKR 319 (325)
Q Consensus 245 ts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 319 (325)
||+||+.++..+.. +||+++.+..||+| +|++|++++.|+++++ +..|++++..
T Consensus 221 Ts~LD~~~~~~i~~-----------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el---~~~y~~l~~~ 274 (305)
T 2v9p_A 221 TSNIDVQAEDRYLY-----------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW---KSFFVRLWGR 274 (305)
T ss_dssp EESSCSTTCGGGGG-----------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH---HHHHHHSTTT
T ss_pred ECCCCHHHHHHHHH-----------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH---HHHHHHHHHH
Confidence 99999998866631 28999988889999 9999999999999998 5567777654
No 62
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=9.8e-36 Score=308.96 Aligned_cols=212 Identities=28% Similarity=0.406 Sum_probs=155.5
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHH-cCC-------CCCCC-------------
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL-RLY-------EPSDG------------- 137 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~-gl~-------~~~~G------------- 137 (325)
.|+++|++. .+|+||||+|++||+++|+|+||||||||+++|+ |.+ .+..|
T Consensus 629 ~L~v~~l~~--------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 700 (972)
T 2r6f_A 629 WLEVVGARE--------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDK 700 (972)
T ss_dssp EEEEEEECS--------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSE
T ss_pred EEEEecCcc--------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccce
Confidence 488888851 3799999999999999999999999999999854 221 12333
Q ss_pred eEEECCEeCCCCC---HH-------HH---------hcceEEEccCCcCc------------------------------
Q 020527 138 QIYIDGFPLTDLD---IR-------WL---------REKIGFVGQEPQLL------------------------------ 168 (325)
Q Consensus 138 ~I~i~g~~i~~~~---~~-------~~---------r~~i~~v~Q~~~l~------------------------------ 168 (325)
.|.+++.++.... +. .. .+.+||++|.+.+.
T Consensus 701 ~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce 780 (972)
T 2r6f_A 701 VIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCE 780 (972)
T ss_dssp EEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECT
T ss_pred EEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccc
Confidence 3788888774321 11 11 13468887753220
Q ss_pred -------------------------cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCc-ccccCCCCCChHH
Q 020527 169 -------------------------QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGY-ETLVDDDLLSGGQ 222 (325)
Q Consensus 169 -------------------------~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~LSgGq 222 (325)
.+|+.|++.+... . . ... ...+.++.+..++ .......+|||||
T Consensus 781 ~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~--~-~-~~~------~~~~~L~~~gL~~~~l~~~~~~LSGGe 850 (972)
T 2r6f_A 781 VCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFAS--I-P-KIK------RKLETLYDVGLGYMKLGQPATTLSGGE 850 (972)
T ss_dssp TTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCS--C-H-HHH------HHHHHHHHTTCSSSBTTCCGGGCCHHH
T ss_pred ccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhc--c-h-hHH------HHHHHHHHcCCCcccccCchhhCCHHH
Confidence 2355555554311 1 1 111 1234556555443 2223346799999
Q ss_pred HHHHHHHHHHcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEE------e
Q 020527 223 KQRIAIARAILRDP---AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI------D 293 (325)
Q Consensus 223 ~QRv~iAral~~~p---~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l------~ 293 (325)
||||+|||+|+.+| +||||||||+|||+.+...+.+.|+++.+ .|.|||+||||++++..||||++| +
T Consensus 851 kQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~---~G~TVIvisHdl~~i~~aDrIivL~p~gG~~ 927 (972)
T 2r6f_A 851 AQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD---NGDTVLVIEHNLDVIKTADYIIDLGPEGGDR 927 (972)
T ss_dssp HHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECCCHHHHTTCSEEEEECSSSTTS
T ss_pred HHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEcCCHHHHHhCCEEEEEcCCCCCC
Confidence 99999999999875 99999999999999999999999999975 488999999999998779999999 7
Q ss_pred CCEEEEEcChHHHhhcCH
Q 020527 294 DGRIIEVGNHAELLHKGR 311 (325)
Q Consensus 294 ~G~i~~~g~~~~l~~~~~ 311 (325)
+|++++.|+++++.....
T Consensus 928 ~G~Iv~~g~~~el~~~~~ 945 (972)
T 2r6f_A 928 GGQIVAVGTPEEVAEVKE 945 (972)
T ss_dssp CCSEEEEESHHHHHTCTT
T ss_pred CCEEEEecCHHHHHhCch
Confidence 899999999999987543
No 63
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=1.9e-35 Score=305.92 Aligned_cols=214 Identities=24% Similarity=0.355 Sum_probs=154.9
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHH-HHcCC-------CC----------------
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNL-LLRLY-------EP---------------- 134 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~-l~gl~-------~~---------------- 134 (325)
.|+++|+++ .+|+||||+|++||+++|+|+||||||||+++ |+|++ +|
T Consensus 502 ~L~v~~l~~--------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~ 573 (842)
T 2vf7_A 502 WLELNGVTR--------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGS 573 (842)
T ss_dssp EEEEEEEEE--------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CC
T ss_pred eEEEEeeee--------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccc
Confidence 499999975 16999999999999999999999999999996 77654 23
Q ss_pred --CCC-------eEEECCEeCCCCCH----------HHHhc---------ceEEEccCC---------------------
Q 020527 135 --SDG-------QIYIDGFPLTDLDI----------RWLRE---------KIGFVGQEP--------------------- 165 (325)
Q Consensus 135 --~~G-------~I~i~g~~i~~~~~----------~~~r~---------~i~~v~Q~~--------------------- 165 (325)
.+| .|.+++.++...+. ..+|+ ..||.++..
T Consensus 574 ~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~ 653 (842)
T 2vf7_A 574 ARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVE 653 (842)
T ss_dssp CEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEET
T ss_pred ccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchh
Confidence 356 68899887753221 11221 122322211
Q ss_pred -cCc-------------------------cccHHHHHhcCC------CCCCCHHHHHHHHHHcCHHHHHHhCCCCcc-cc
Q 020527 166 -QLL-------------------------QMDIKSNIMYGC------PKDVKNEDIEWAAKQAYVHEFILSLPCGYE-TL 212 (325)
Q Consensus 166 -~l~-------------------------~~tv~enl~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 212 (325)
.++ ..++.||+.+.. ... .. .. ....+.++.+..++. ..
T Consensus 654 ~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~-~~-~~------~~~~~~L~~~gL~~~~l~ 725 (842)
T 2vf7_A 654 LLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFAD-ES-AI------FRALDTLREVGLGYLRLG 725 (842)
T ss_dssp TCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTT-SH-HH------HHHHHHHHHTTCTTSBTT
T ss_pred hhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhc-ch-HH------HHHHHHHHHcCCCccccc
Confidence 111 134555543320 000 00 00 123455666655442 12
Q ss_pred cCCCCCChHHHHHHHHHHHHcCC---CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEE
Q 020527 213 VDDDLLSGGQKQRIAIARAILRD---PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI 289 (325)
Q Consensus 213 ~~~~~LSgGq~QRv~iAral~~~---p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v 289 (325)
....+|||||||||+|||+|+.+ |+||||||||+|||+.+...+.++|+++.+ .|.|||+||||++++..||||
T Consensus 726 ~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~---~G~tVIvisHdl~~i~~aDri 802 (842)
T 2vf7_A 726 QPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD---AGNTVIAVEHKMQVVAASDWV 802 (842)
T ss_dssp CCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECCCHHHHTTCSEE
T ss_pred CCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEcCCHHHHHhCCEE
Confidence 33468999999999999999996 799999999999999999999999999975 488999999999999679999
Q ss_pred EEE------eCCEEEEEcChHHHhhcCH
Q 020527 290 VVI------DDGRIIEVGNHAELLHKGR 311 (325)
Q Consensus 290 ~~l------~~G~i~~~g~~~~l~~~~~ 311 (325)
++| ++|+|++.|++++++....
T Consensus 803 i~L~p~~g~~~G~Iv~~g~~~el~~~~~ 830 (842)
T 2vf7_A 803 LDIGPGAGEDGGRLVAQGTPAEVAQAAG 830 (842)
T ss_dssp EEECSSSGGGCCSEEEEECHHHHTTCTT
T ss_pred EEECCCCCCCCCEEEEEcCHHHHHhCch
Confidence 999 7999999999999987543
No 64
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=5.9e-35 Score=304.06 Aligned_cols=216 Identities=24% Similarity=0.368 Sum_probs=153.3
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHH-c----CCC---CCCCe------------
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL-R----LYE---PSDGQ------------ 138 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~-g----l~~---~~~G~------------ 138 (325)
.|+++|++. .+|+||||+|++||+++|+|+||||||||+++|+ | .+. +..|.
T Consensus 647 ~L~v~~l~~--------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 718 (993)
T 2ygr_A 647 QLTVVGARE--------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDK 718 (993)
T ss_dssp EEEEEEECS--------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSE
T ss_pred eEEEecCcc--------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccce
Confidence 489999851 2799999999999999999999999999999853 2 221 23443
Q ss_pred -EEECCEeCCCC---CHH-------HH---------hcceEEEccCCcC---------------------c---------
Q 020527 139 -IYIDGFPLTDL---DIR-------WL---------REKIGFVGQEPQL---------------------L--------- 168 (325)
Q Consensus 139 -I~i~g~~i~~~---~~~-------~~---------r~~i~~v~Q~~~l---------------------~--------- 168 (325)
|.+++.++... ++. .. .+..||++|.+.+ |
T Consensus 719 ~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce 798 (993)
T 2ygr_A 719 LVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCE 798 (993)
T ss_dssp EECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECT
T ss_pred EEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeeh
Confidence 45555555321 111 01 2346777775321 0
Q ss_pred -------------------------cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCc-ccccCCCCCChHH
Q 020527 169 -------------------------QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGY-ETLVDDDLLSGGQ 222 (325)
Q Consensus 169 -------------------------~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~LSgGq 222 (325)
.+|+.|++.+... . . ... ...+.++.+..++ .......+|||||
T Consensus 799 ~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~--~-~-~~~------~~~~~L~~lgL~~~~l~~~~~~LSGGe 868 (993)
T 2ygr_A 799 VCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEP--I-A-GVH------RYLRTLVDVGLGYVRLGQPAPTLSGGE 868 (993)
T ss_dssp TTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTT--C-H-HHH------HHHHHHHHTTGGGSBTTCCGGGSCHHH
T ss_pred hccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhc--c-h-HHH------HHHHHHHHcCCCcccccCccccCCHHH
Confidence 1244555544211 1 1 111 1123455544333 1222346799999
Q ss_pred HHHHHHHHHHcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEE------e
Q 020527 223 KQRIAIARAILRDP---AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI------D 293 (325)
Q Consensus 223 ~QRv~iAral~~~p---~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l------~ 293 (325)
||||+|||+|+.+| +||||||||+|||+.+...+.++|+++.+ .|.|||+||||++++..||+|++| +
T Consensus 869 kQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~---~G~TVIvisHdl~~i~~aDrIivL~p~gg~~ 945 (993)
T 2ygr_A 869 AQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVD---KGNTVIVIEHNLDVIKTSDWIIDLGPEGGAG 945 (993)
T ss_dssp HHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECCCHHHHTTCSEEEEEESSSTTS
T ss_pred HHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEcCCHHHHHhCCEEEEECCCcCCC
Confidence 99999999999875 99999999999999999999999999975 488999999999998779999999 6
Q ss_pred CCEEEEEcChHHHhhcCHHHHH
Q 020527 294 DGRIIEVGNHAELLHKGRLYAK 315 (325)
Q Consensus 294 ~G~i~~~g~~~~l~~~~~~~~~ 315 (325)
+|++++.|+++++......|..
T Consensus 946 ~G~Iv~~G~~~el~~~~~~~t~ 967 (993)
T 2ygr_A 946 GGTVVAQGTPEDVAAVPASYTG 967 (993)
T ss_dssp CSEEEEEECHHHHHHCTTCHHH
T ss_pred CCEEEEecCHHHHHhCCHHHHH
Confidence 8999999999999876444433
No 65
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=100.00 E-value=9.2e-34 Score=273.69 Aligned_cols=199 Identities=17% Similarity=0.197 Sum_probs=142.4
Q ss_pred ceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC--------------------------------------CCCCe
Q 020527 97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--------------------------------------PSDGQ 138 (325)
Q Consensus 97 iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~--------------------------------------~~~G~ 138 (325)
+++++||++.+| +++|+||||||||||+++|.++.. +.+|+
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~ 128 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence 799999999999 999999999999999999987764 45789
Q ss_pred EEECCEeCCCCCHHHHhcc-eEEEccCCcCccccHHHHHhcCCCCCCCH--H----------------------------
Q 020527 139 IYIDGFPLTDLDIRWLREK-IGFVGQEPQLLQMDIKSNIMYGCPKDVKN--E---------------------------- 187 (325)
Q Consensus 139 I~i~g~~i~~~~~~~~r~~-i~~v~Q~~~l~~~tv~enl~~~~~~~~~~--~---------------------------- 187 (325)
+++||+++...+...+.+. +++++|++.++..+..++..+-.. .... .
T Consensus 129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~-~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~ 207 (415)
T 4aby_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDR-RVTKEAQAYAAAHAAWREAVSRLERLQASESSKHP 207 (415)
T ss_dssp EEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred EEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHH-HhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence 9999999865444555554 899999987764333322221000 0000 0
Q ss_pred -------HH---HHHH---------------H--HcCHHHHHHhCCCCc------------------cc---cc--CCCC
Q 020527 188 -------DI---EWAA---------------K--QAYVHEFILSLPCGY------------------ET---LV--DDDL 217 (325)
Q Consensus 188 -------~~---~~~~---------------~--~~~~~~~~~~~~~~~------------------~~---~~--~~~~ 217 (325)
.+ ...+ . ...+.+.+..+.... +. .. ++.+
T Consensus 208 ~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 287 (415)
T 4aby_A 208 TSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGE 287 (415)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCC
Confidence 00 0000 0 001112223222110 00 00 0111
Q ss_pred --------CChHHHHHHHHHHHHcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcC
Q 020527 218 --------LSGGQKQRIAIARAILRDP--AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVD 287 (325)
Q Consensus 218 --------LSgGq~QRv~iAral~~~p--~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d 287 (325)
||||||||++|||+|+.+| ++|||||||++||+.+...+.+.|+++. +|.|||+||||++++..||
T Consensus 288 ~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~----~~~~vi~itH~~~~~~~~d 363 (415)
T 4aby_A 288 ELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA----DTRQVLVVTHLAQIAARAH 363 (415)
T ss_dssp CCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT----TTSEEEEECSCHHHHTTCS
T ss_pred cccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh----CCCEEEEEeCcHHHHhhcC
Confidence 7999999999999999999 9999999999999999999999999985 3789999999998887799
Q ss_pred EEEEE----eCCEEEEEc
Q 020527 288 RIVVI----DDGRIIEVG 301 (325)
Q Consensus 288 ~v~~l----~~G~i~~~g 301 (325)
++++| ++|+++...
T Consensus 364 ~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 364 HHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEEEEEEETTEEEEEE
T ss_pred eEEEEEEeccCCceEEEE
Confidence 99999 999987653
No 66
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-37 Score=301.91 Aligned_cols=195 Identities=15% Similarity=0.133 Sum_probs=149.2
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCC-e-EEECCEeCCCCCHHHHhc
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-Q-IYIDGFPLTDLDIRWLRE 156 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G-~-I~i~g~~i~~~~~~~~r~ 156 (325)
+++++||+|+|+ ++||++++|++++|+||||||||||+|+|+|+++|++| + |+++|. .++
T Consensus 118 mi~~~nl~~~y~---------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~---------~~~ 179 (460)
T 2npi_A 118 MKYIYNLHFMLE---------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD---------PQQ 179 (460)
T ss_dssp HHHHHHHHHHHH---------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC---------TTS
T ss_pred hhhhhhhhehhh---------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC---------ccC
Confidence 467778877762 79999999999999999999999999999999999999 9 999981 257
Q ss_pred ceEEEccCCcCc----cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH-
Q 020527 157 KIGFVGQEPQLL----QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA- 231 (325)
Q Consensus 157 ~i~~v~Q~~~l~----~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra- 231 (325)
.++|+||++.+| ..|++||+ ++........ ....+.++++.+ ++.......+|||||||||+||||
T Consensus 180 ~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~------~~~~~~~ll~~~--gl~~~~~~~~LSgGq~qrlalAra~ 250 (460)
T 2npi_A 180 PIFTVPGCISATPISDILDAQLPT-WGQSLTSGAT------LLHNKQPMVKNF--GLERINENKDLYLECISQLGQVVGQ 250 (460)
T ss_dssp CSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCC------SSCCBCCEECCC--CSSSGGGCHHHHHHHHHHHHHHHHH
T ss_pred Ceeeeccchhhcccccccchhhhh-cccccccCcc------hHHHHHHHHHHh--CCCcccchhhhhHHHHHHHHHHHHH
Confidence 899999998654 25899998 7532100000 000111122222 222222235799999999999999
Q ss_pred -HcCCCCE----EEEeC-CCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCch------HHH-hcCE-----EEEEe
Q 020527 232 -ILRDPAI----LLLDE-ATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS------TIK-AVDR-----IVVID 293 (325)
Q Consensus 232 -l~~~p~l----lllDE-Pts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~------~~~-~~d~-----v~~l~ 293 (325)
|+.+|++ ||||| ||++||+. ...+.++++++ ++|+|+||||.+ ++. .||+ |++|+
T Consensus 251 rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~------~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~ 323 (460)
T 2npi_A 251 RLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL------NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIP 323 (460)
T ss_dssp HHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT------TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEEC
T ss_pred HhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh------CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEe
Confidence 9999999 99999 99999999 55566665544 678999999988 554 4999 99999
Q ss_pred -CCEEEEEcChHHHhh
Q 020527 294 -DGRIIEVGNHAELLH 308 (325)
Q Consensus 294 -~G~i~~~g~~~~l~~ 308 (325)
+|+++ .|+++++.+
T Consensus 324 k~G~iv-~g~~~~~~~ 338 (460)
T 2npi_A 324 KLDGVS-AVDDVYKRS 338 (460)
T ss_dssp CCTTCC-CCCHHHHHH
T ss_pred CCCcEE-ECCHHHHhh
Confidence 99999 899987743
No 67
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.97 E-value=3.7e-30 Score=241.24 Aligned_cols=202 Identities=23% Similarity=0.278 Sum_probs=136.5
Q ss_pred eeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCC----------------------------------------------
Q 020527 99 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY---------------------------------------------- 132 (325)
Q Consensus 99 ~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~---------------------------------------------- 132 (325)
+++++++.+| +++|+||||||||||+.+|..++
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 4678899999 99999999999999999999654
Q ss_pred ----CCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHHHHHhcCCCCC--C------------CHHHHHHHH
Q 020527 133 ----EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKD--V------------KNEDIEWAA 193 (325)
Q Consensus 133 ----~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~enl~~~~~~~--~------------~~~~~~~~~ 193 (325)
.+.+|.+++||.++...+.......+++.||+..++ .+++.+++....... . ..+++.+..
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 234578899998874333445556788889888766 688988886531100 0 000111111
Q ss_pred HHc------------CHH-HHHHhCCCCcccc--------cCCCCCChHHHHHHHHHHHHc----CCCCEEEEeCCCCCC
Q 020527 194 KQA------------YVH-EFILSLPCGYETL--------VDDDLLSGGQKQRIAIARAIL----RDPAILLLDEATSAL 248 (325)
Q Consensus 194 ~~~------------~~~-~~~~~~~~~~~~~--------~~~~~LSgGq~QRv~iAral~----~~p~llllDEPts~L 248 (325)
... .+. ...+.++.++... .....||||||||++|||||+ .+|+++||||||++|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L 254 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL 254 (322)
T ss_dssp HHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred HHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence 100 000 0001111122111 112479999999999999997 689999999999999
Q ss_pred CHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEE--EEEeCCEE-EEEcChHH
Q 020527 249 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI--VVIDDGRI-IEVGNHAE 305 (325)
Q Consensus 249 D~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v--~~l~~G~i-~~~g~~~~ 305 (325)
|+..+..+.+.++++. .+.++|++||+++....||++ ++|.+|.. +...+.++
T Consensus 255 D~~~~~~l~~~l~~~~----~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 255 DDYNAERFKRLLKENS----KHTQFIVITHNKIVMEAADLLHGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp CHHHHHHHHHHHHHHT----TTSEEEEECCCTTGGGGCSEEEEEEESSSCEEEEECCC--
T ss_pred CHHHHHHHHHHHHHhc----CCCeEEEEECCHHHHhhCceEEEEEEeCCEEEEEEEEcch
Confidence 9999999999999883 367999999998776779986 88888864 33444444
No 68
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.97 E-value=2.6e-33 Score=247.18 Aligned_cols=157 Identities=18% Similarity=0.223 Sum_probs=100.8
Q ss_pred CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHH
Q 020527 96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSN 175 (325)
Q Consensus 96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~en 175 (325)
.+|+|+ ++||+++|+||||||||||+++|+|+ +|++|+|.. .++.. +....++++||+||++ +||
T Consensus 14 ~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~--~~~~~-~~~~~~~~ig~v~q~~-------~en 78 (208)
T 3b85_A 14 HYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR--IILTR-PAVEAGEKLGFLPGTL-------NEK 78 (208)
T ss_dssp HHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE--EEEEE-CSCCTTCCCCSSCC------------
T ss_pred HHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee--EEecC-CchhhhcceEEecCCH-------HHH
Confidence 588885 89999999999999999999999999 999999943 33221 1123467899999987 444
Q ss_pred H-hcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHH
Q 020527 176 I-MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 254 (325)
Q Consensus 176 l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~ 254 (325)
+ .+... .............+.++++. + | |||||++|||||+.+|++|||||||++ ++.
T Consensus 79 l~~~~~~---~~~~~~~~~~~~~~~~~l~~---g---------l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~ 137 (208)
T 3b85_A 79 IDPYLRP---LHDALRDMVEPEVIPKLMEA---G---------I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPA 137 (208)
T ss_dssp -CTTTHH---HHHHHTTTSCTTHHHHHHHT---T---------S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHH
T ss_pred HHHHHHH---HHHHHHHhccHHHHHHHHHh---C---------C--chHHHHHHHHHHhcCCCEEEEeCCccc----cHH
Confidence 4 22100 00000000001112333432 1 2 999999999999999999999999999 788
Q ss_pred HHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCE
Q 020527 255 YVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR 296 (325)
Q Consensus 255 ~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~ 296 (325)
.+.+.|+++ + .|+||| +|||++.+.. ....++|.
T Consensus 138 ~l~~~l~~l-~---~g~tii-vtHd~~~~~~---~~~~~~G~ 171 (208)
T 3b85_A 138 QMKMFLTRL-G---FGSKMV-VTGDITQVDL---PGGQKSGL 171 (208)
T ss_dssp HHHHHHTTB-C---TTCEEE-EEEC---------------CC
T ss_pred HHHHHHHHh-c---CCCEEE-EECCHHHHhC---cCCCCCcH
Confidence 889998887 3 378999 9999987654 33345653
No 69
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.96 E-value=1.7e-29 Score=240.72 Aligned_cols=81 Identities=28% Similarity=0.449 Sum_probs=75.1
Q ss_pred CCCChHHHHHHHHHHHHc------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEE
Q 020527 216 DLLSGGQKQRIAIARAIL------RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI 289 (325)
Q Consensus 216 ~~LSgGq~QRv~iAral~------~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v 289 (325)
.+|||||||||+|||||+ .+|++|||||||++||+.+...+.+.|+++.+ .|+|||+||||++.+..||++
T Consensus 278 ~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~---~g~tvi~itH~~~~~~~~d~~ 354 (365)
T 3qf7_A 278 RGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER---LNKVIVFITHDREFSEAFDRK 354 (365)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG---SSSEEEEEESCHHHHTTCSCE
T ss_pred hhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh---CCCEEEEEecchHHHHhCCEE
Confidence 579999999999999999 79999999999999999999999999999964 488999999999987779999
Q ss_pred EEEeCCEEEE
Q 020527 290 VVIDDGRIIE 299 (325)
Q Consensus 290 ~~l~~G~i~~ 299 (325)
++|++|++++
T Consensus 355 ~~l~~G~i~~ 364 (365)
T 3qf7_A 355 LRITGGVVVN 364 (365)
T ss_dssp EEEETTEEC-
T ss_pred EEEECCEEEe
Confidence 9999999875
No 70
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.96 E-value=1.4e-30 Score=222.37 Aligned_cols=149 Identities=19% Similarity=0.241 Sum_probs=106.2
Q ss_pred eeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcC--ccccHHHHHh
Q 020527 100 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQL--LQMDIKSNIM 177 (325)
Q Consensus 100 ~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l--~~~tv~enl~ 177 (325)
|+||++++||+++|+||||||||||+|++.+ |...+ +...++ ++++|++.- +..++++++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~--------~~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVI--------SSDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEE--------EHHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEE--------ccHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 6899999999999999999999999999642 21111 122232 677787632 2334444332
Q ss_pred cCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC-CCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH-----
Q 020527 178 YGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD-DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE----- 251 (325)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~----- 251 (325)
.. . . ..+. .++..... ....|||||||++||||++.+|++|+|||||++||+.
T Consensus 64 ~~---------~-~--------~~~~---~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 64 YI---------V-S--------KRLQ---LGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRT 122 (171)
T ss_dssp HH---------H-H--------HHHH---TTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCS
T ss_pred HH---------H-H--------HHHh---CCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhccc
Confidence 10 0 0 0011 12222111 2347999999999999999999999999999999999
Q ss_pred -----------HHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEE
Q 020527 252 -----------SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI 289 (325)
Q Consensus 252 -----------~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v 289 (325)
....+.+.++++++ +|.|+|++|||++++..++++
T Consensus 123 ~~~~~~~vi~~~~~~l~~~l~~l~~---~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 123 DRQVEEYVIRKHTQQMKKSIKGLQR---EGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp SCCCCHHHHHHHHHHHHHHSTTHHH---HTCSEEEEECSHHHHHHEEEE
T ss_pred CCCCCHHHHHHHHHHhhhhhhhHHh---cCCcEEEEeCCHHHhhhhhhc
Confidence 55888888888765 388999999999999877665
No 71
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.95 E-value=1.3e-32 Score=258.94 Aligned_cols=214 Identities=13% Similarity=0.158 Sum_probs=143.2
Q ss_pred hH-HHHhcC----CcCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHhcCCCCccccccccc-cCCcc
Q 020527 6 GG-MSIMIG----QVSPEQLTKYVLYCEWLIYATWRMVD-NLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKL-QRLMG 78 (325)
Q Consensus 6 g~-~~v~~g----~it~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~ 78 (325)
|. |....+ .+|.+.+.+++.+...+..+ .+.. ....+..+..+..|+..+++.|..... ...... .....
T Consensus 62 g~~~~~~~~~~~~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~Ri~~~l~~p~~~~~-~~~~~ir~~~~~ 138 (330)
T 2pt7_A 62 NGEWQPFDVRDRKAFSLSRLMHFARCCASFKKK--TIDNYENPILSSNLANGERVQIVLSPVTVNDE-TISISIRIPSKT 138 (330)
T ss_dssp TSCEEEEECTTCGGGSHHHHHHHHHHHHHHTTC--CCCSSSCCEEEEECTTSCEEEEECTTTSSSTT-CCEEEEECCCCC
T ss_pred CceEEEecCCcccCCCHHHHHHHHHHHHHHhCC--CCCCCCCeeEEEEcCCCcEEEEEEcCCccCCC-CceEEEeCCCCC
Confidence 55 555554 79999999888777665443 1111 111222223344566665543321100 000000 00001
Q ss_pred cEE---------EEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCC
Q 020527 79 HVQ---------FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL 149 (325)
Q Consensus 79 ~i~---------~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~ 149 (325)
.++ +++++| | . ++++++||++++|++++|+||||||||||+++|+|+++|++|.|.++|.+. +
T Consensus 139 ~i~l~~l~~~g~~~~v~f-y--~---~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e--~ 210 (330)
T 2pt7_A 139 TYPHSFFEEQGFYNLLDN-K--E---QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE--I 210 (330)
T ss_dssp CCCHHHHHHTTTTTTSTT-H--H---HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCC--C
T ss_pred CCCHHHHHhCCCcCchhh-H--H---HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeec--c
Confidence 122 333333 3 1 279999999999999999999999999999999999999999999998652 2
Q ss_pred CHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 020527 150 DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 229 (325)
Q Consensus 150 ~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA 229 (325)
.....++.++++++ |||+||++||
T Consensus 211 ~~~~~~~~i~~~~g--------------------------------------------------------gg~~~r~~la 234 (330)
T 2pt7_A 211 VFKHHKNYTQLFFG--------------------------------------------------------GNITSADCLK 234 (330)
T ss_dssp CCSSCSSEEEEECB--------------------------------------------------------TTBCHHHHHH
T ss_pred ccccchhEEEEEeC--------------------------------------------------------CChhHHHHHH
Confidence 21122344554430 8999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCE
Q 020527 230 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR 296 (325)
Q Consensus 230 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~ 296 (325)
|||..+|+++|+||||+. ++.+.|+.+.. .+.|+|+++|+.+....|||+++|.+|.
T Consensus 235 ~aL~~~p~ilildE~~~~-------e~~~~l~~~~~---g~~tvi~t~H~~~~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 235 SCLRMRPDRIILGELRSS-------EAYDFYNVLCS---GHKGTLTTLHAGSSEEAFIRLANMSSSN 291 (330)
T ss_dssp HHTTSCCSEEEECCCCST-------HHHHHHHHHHT---TCCCEEEEEECSSHHHHHHHHHHHHHTS
T ss_pred HHhhhCCCEEEEcCCChH-------HHHHHHHHHhc---CCCEEEEEEcccHHHHHhhhheehhcCC
Confidence 999999999999999982 34567777653 2457999999999667799999998885
No 72
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.95 E-value=5e-29 Score=214.50 Aligned_cols=147 Identities=16% Similarity=0.142 Sum_probs=102.4
Q ss_pred EEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 189 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~ 189 (325)
+++|+||||||||||+++|+|++. |.++|.+.........++++||++|++ ++.+|+. +.. ....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~-~~~-~~~~--- 66 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIF-SSK-FFTS--- 66 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEEE-EET-TCCC---
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHHH-Hhh-cCCc---
Confidence 689999999999999999999985 556676543221113467899999986 2223321 100 0000
Q ss_pred HHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH-----HcCCCCEEEEeC--CCCCCCHHHHHHHHHHHHH
Q 020527 190 EWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA-----ILRDPAILLLDE--ATSALDSESEHYVKGVLHA 262 (325)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra-----l~~~p~llllDE--Pts~LD~~~~~~i~~~l~~ 262 (325)
.........+||||||||++|||| ++.+|+++|||| ||++||+...+.+.+.+++
T Consensus 67 ------------------~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~ 128 (178)
T 1ye8_A 67 ------------------KKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD 128 (178)
T ss_dssp ------------------SSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC
T ss_pred ------------------cccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc
Confidence 000011124699999999999996 999999999999 9999999999888887754
Q ss_pred hhccCCCCeEEEEEec---CchHHHh-cCEEEEEeCCEEEE
Q 020527 263 LRNDCKTKRTVIVIAH---RLSTIKA-VDRIVVIDDGRIIE 299 (325)
Q Consensus 263 l~~~~~~g~tvi~vtH---~~~~~~~-~d~v~~l~~G~i~~ 299 (325)
.+.|+|++|| |.+.+.. ||| .+|++++
T Consensus 129 ------~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 129 ------PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp ------TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred ------CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 2567888885 8888865 888 5667665
No 73
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.95 E-value=5.4e-31 Score=253.90 Aligned_cols=176 Identities=19% Similarity=0.168 Sum_probs=134.7
Q ss_pred CceeeeeEEeeCCc--------------------EEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHh
Q 020527 96 PILNHVCLTIEANE--------------------VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 155 (325)
Q Consensus 96 ~iL~~isl~i~~Ge--------------------~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r 155 (325)
.+|++|||+|++|+ +++|+||||||||||+|+|+|+++|++|+|.++|.++. +
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------~ 109 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------M 109 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------C
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------e
Confidence 58999999999999 99999999999999999999999999999999997642 1
Q ss_pred cceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChH--HHHHHHHHHHHc
Q 020527 156 EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGG--QKQRIAIARAIL 233 (325)
Q Consensus 156 ~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgG--q~QRv~iAral~ 233 (325)
.++++|++.....|++||+.++.. ...+.+.++..++.+. +.. .. ||+| |+||++|||||+
T Consensus 110 --~~~v~q~~~~~~ltv~D~~g~~~~----~~~~~~~L~~~~L~~~--------~~~--~~-lS~G~~~kqrv~la~aL~ 172 (413)
T 1tq4_A 110 --ERHPYKHPNIPNVVFWDLPGIGST----NFPPDTYLEKMKFYEY--------DFF--II-ISATRFKKNDIDIAKAIS 172 (413)
T ss_dssp --CCEEEECSSCTTEEEEECCCGGGS----SCCHHHHHHHTTGGGC--------SEE--EE-EESSCCCHHHHHHHHHHH
T ss_pred --eEEeccccccCCeeehHhhcccch----HHHHHHHHHHcCCCcc--------CCe--EE-eCCCCccHHHHHHHHHHH
Confidence 278999875446899999876522 1123344444443221 111 12 8999 999999999999
Q ss_pred C----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc----c--CCCCeEEEEEecCchH--HHh-cCEEE-EEe
Q 020527 234 R----------DPAILLLDEATSALDSESEHYVKGVLHALRN----D--CKTKRTVIVIAHRLST--IKA-VDRIV-VID 293 (325)
Q Consensus 234 ~----------~p~llllDEPts~LD~~~~~~i~~~l~~l~~----~--~~~g~tvi~vtH~~~~--~~~-~d~v~-~l~ 293 (325)
. +|+++++||||++||+.++.++.+.++++.+ + .....+++++||+++. ++. ||++. .|.
T Consensus 173 ~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lp 252 (413)
T 1tq4_A 173 MMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP 252 (413)
T ss_dssp HTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred hcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCc
Confidence 9 9999999999999999999999999998842 1 1123678899999886 654 88874 444
Q ss_pred CC
Q 020527 294 DG 295 (325)
Q Consensus 294 ~G 295 (325)
.|
T Consensus 253 eg 254 (413)
T 1tq4_A 253 IY 254 (413)
T ss_dssp GG
T ss_pred cc
Confidence 44
No 74
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.94 E-value=3.5e-30 Score=226.32 Aligned_cols=171 Identities=15% Similarity=0.113 Sum_probs=112.7
Q ss_pred CCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHH
Q 020527 95 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIK 173 (325)
Q Consensus 95 ~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~ 173 (325)
.++++| .+|++||+++|+||||||||||+|+|+|+++ .|.+++...........++.++|+||++.+| ..|+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 357888 7899999999999999999999999999986 3555542221111112356799999999877 46787
Q ss_pred HHHhcCC-------CCCCCHHHHHHH----------HHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 020527 174 SNIMYGC-------PKDVKNEDIEWA----------AKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 236 (325)
Q Consensus 174 enl~~~~-------~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p 236 (325)
+|+.... ..........+. ++..++.++.++.+ ..|| ||+.+|
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~lS-----------~l~~~p 142 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP---------EAVT-----------VFLAPP 142 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT---------TSEE-----------EEEECS
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC---------CcEE-----------EEEECC
Confidence 7763210 000112222221 22233444444443 3456 899999
Q ss_pred CEEEEeCCCCCC----CHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEe
Q 020527 237 AILLLDEATSAL----DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID 293 (325)
Q Consensus 237 ~llllDEPts~L----D~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~ 293 (325)
++++|||||+++ |+..++++.+.++++.++ .|.|+|+||||++++.. ||||++|.
T Consensus 143 ~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~--~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 143 SWQDLQARLIGRGTETADVIQRRLDTARIELAAQ--GDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp CHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGG--GGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhh--ccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 999999999998 788999999999998753 47899999999999865 99999984
No 75
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.94 E-value=5.2e-30 Score=249.39 Aligned_cols=197 Identities=18% Similarity=0.123 Sum_probs=152.5
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCE---eCCCC-----C
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF---PLTDL-----D 150 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~---~i~~~-----~ 150 (325)
.++++|+++.|+.. ..+|+++ |+|.+||+++|+||||||||||+++|+|+.+|++|.|.++|+ ++..+ .
T Consensus 131 ~l~~~~v~~~~~tg--~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~ 207 (438)
T 2dpy_A 131 PLQRTPIEHVLDTG--VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILG 207 (438)
T ss_dssp TTTSCCCCSBCCCS--CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTH
T ss_pred ceEEeccceecCCC--ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhcc
Confidence 47899999999632 4699999 999999999999999999999999999999999999999998 44322 1
Q ss_pred HHHHhcceEEEccC-CcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 020527 151 IRWLREKIGFVGQE-PQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 228 (325)
Q Consensus 151 ~~~~r~~i~~v~Q~-~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 228 (325)
...+++.++|++|+ ..++ ..|+.+|+.+.. +. ... ....+..+++ ....||+|| |||+|
T Consensus 208 ~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a------e~-~~~-~~~~v~~~ld----------~l~~lS~g~-qrvsl 268 (438)
T 2dpy_A 208 PDGRARSVVIAAPADVSPLLRMQGAAYATRIA------ED-FRD-RGQHVLLIMD----------SLTRYAMAQ-REIAL 268 (438)
T ss_dssp HHHHHTEEEEEECTTSCHHHHHHHHHHHHHHH------HH-HHT-TTCEEEEEEE----------CHHHHHHHH-HHHHH
T ss_pred ccccCceEEEEECCCCCHHHHHHHHHHHHHHH------HH-HHh-CCCCHHHHHH----------hHHHHHHHH-HHHHH
Confidence 23467889999995 3444 689999987631 00 000 0000000000 013589999 99999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccC-CCCe-----EEEEEecCchHHHhcCEEEEEeCCEEEEEcC
Q 020527 229 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC-KTKR-----TVIVIAHRLSTIKAVDRIVVIDDGRIIEVGN 302 (325)
Q Consensus 229 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~-~~g~-----tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~ 302 (325)
| +.+|++ |+|||+.+...+.++++++.+.. +.|. ||+++|||++ ...||++++|.+|+++.+++
T Consensus 269 A---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~~~ 338 (438)
T 2dpy_A 269 A---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLSRR 338 (438)
T ss_dssp H---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEECHH
T ss_pred H---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEeCC
Confidence 9 899998 99999999999999998885410 1264 9999999999 55699999999999999998
Q ss_pred hHHHh
Q 020527 303 HAELL 307 (325)
Q Consensus 303 ~~~l~ 307 (325)
+.++.
T Consensus 339 ~~~~~ 343 (438)
T 2dpy_A 339 LAEAG 343 (438)
T ss_dssp HHHTT
T ss_pred HHHcc
Confidence 87764
No 76
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.94 E-value=5.9e-29 Score=231.10 Aligned_cols=176 Identities=14% Similarity=0.137 Sum_probs=126.7
Q ss_pred ceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCC----HHHH--hcceEEEccCCc-Cc-
Q 020527 97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRWL--REKIGFVGQEPQ-LL- 168 (325)
Q Consensus 97 iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~----~~~~--r~~i~~v~Q~~~-l~- 168 (325)
.++++||++++|++++|+||||||||||++.|+|+++|++|+|.++|.++.... ...+ +..|+|++|++. ++
T Consensus 89 ~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~ 168 (302)
T 3b9q_A 89 SKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 168 (302)
T ss_dssp CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCH
T ss_pred cccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCH
Confidence 346789999999999999999999999999999999999999999998875432 1222 457999999987 76
Q ss_pred cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC--EEEEeCCCC
Q 020527 169 QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA--ILLLDEATS 246 (325)
Q Consensus 169 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~--llllDEPts 246 (325)
..|++||+.++...... . .+++..+..........+|| |||++||||++.+|+ +|+|| ||+
T Consensus 169 ~~~v~e~l~~~~~~~~d----------~---~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pts 231 (302)
T 3b9q_A 169 ATVLSKAVKRGKEEGYD----------V---VLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNT 231 (302)
T ss_dssp HHHHHHHHHHHHHTTCS----------E---EEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGG
T ss_pred HHHHHHHHHHHHHcCCc----------c---hHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCC
Confidence 57999999764111000 0 01111111100000113588 999999999999999 99999 999
Q ss_pred CCCHHHHHHHHHHHHHhhccCCCCeEEEEEec---------CchHHHh-cCEEEEEeCCEE
Q 020527 247 ALDSESEHYVKGVLHALRNDCKTKRTVIVIAH---------RLSTIKA-VDRIVVIDDGRI 297 (325)
Q Consensus 247 ~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH---------~~~~~~~-~d~v~~l~~G~i 297 (325)
|||+..+. +++.+. .|.|+|++|| .++.+.. .+.|.++..|+.
T Consensus 232 glD~~~~~------~~~~~~--~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 232 GLNMLPQA------REFNEV--VGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp GGGGHHHH------HHHHHH--TCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CcCHHHHH------HHHHHh--cCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 99998642 334322 3789999999 3344443 689999999965
No 77
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.93 E-value=4.2e-30 Score=228.00 Aligned_cols=171 Identities=14% Similarity=0.154 Sum_probs=108.8
Q ss_pred CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCH-HHHhcceEEEccCCcCcc-cc-H
Q 020527 96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREKIGFVGQEPQLLQ-MD-I 172 (325)
Q Consensus 96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~-~~~r~~i~~v~Q~~~l~~-~t-v 172 (325)
.-|+||||+|++|++++|+||||||||||+++|+|++ | |+|.+ |.++..... ...++.++|+||++.+|+ .+ .
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 4799999999999999999999999999999999999 5 99999 877643321 224568999999987763 32 2
Q ss_pred HHHHhcC---CC-CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH-----HHHHcCCCCEEEEeC
Q 020527 173 KSNIMYG---CP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI-----ARAILRDPAILLLDE 243 (325)
Q Consensus 173 ~enl~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i-----Aral~~~p~llllDE 243 (325)
.+++.++ .. .......+.++++.. . .... ..+|||||+||++| ||+++.+|++++|||
T Consensus 87 ~~~l~~~~~~~~~~g~~~~~i~~~l~~~---------~---~~il-~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde 153 (218)
T 1z6g_A 87 EDFLEYDNYANNFYGTLKSEYDKAKEQN---------K---ICLF-EMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLS 153 (218)
T ss_dssp TCEEEEEEETTEEEEEEHHHHHHHHHTT---------C---EEEE-EECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHH
T ss_pred cchhhhhhcccccCCCcHHHHHHHHhCC---------C---cEEE-EecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHH
Confidence 2233211 00 001122222232221 1 0000 13589999999999 899999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhhccCC----CCeEEEEEecCchHH
Q 020527 244 ATSALDSESEHYVKGVLHALRNDCK----TKRTVIVIAHRLSTI 283 (325)
Q Consensus 244 Pts~LD~~~~~~i~~~l~~l~~~~~----~g~tvi~vtH~~~~~ 283 (325)
||+++|..++..+.+.+.++.++.. ...+.|+++||++.+
T Consensus 154 ~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea 197 (218)
T 1z6g_A 154 RLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLT 197 (218)
T ss_dssp HHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHH
Confidence 9999999999999888877653210 123455555555543
No 78
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.92 E-value=1.1e-27 Score=226.92 Aligned_cols=174 Identities=14% Similarity=0.146 Sum_probs=127.0
Q ss_pred eeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCC----HHHH--hcceEEEccCCc-Cc-cc
Q 020527 99 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRWL--REKIGFVGQEPQ-LL-QM 170 (325)
Q Consensus 99 ~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~----~~~~--r~~i~~v~Q~~~-l~-~~ 170 (325)
..+||++++|++++|+||||||||||++.|+|+++|++|+|.++|.++.... ...+ +..|+|++|++. ++ ..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 4688999999999999999999999999999999999999999998875432 1122 457999999987 66 57
Q ss_pred cHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC--EEEEeCCCCCC
Q 020527 171 DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA--ILLLDEATSAL 248 (325)
Q Consensus 171 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~--llllDEPts~L 248 (325)
|++||+.++...... . .+++..+..........+|| |||++||||++.+|+ +|+|| ||+||
T Consensus 228 tv~e~l~~~~~~~~d----------~---~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttgl 290 (359)
T 2og2_A 228 VLSKAVKRGKEEGYD----------V---VLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGL 290 (359)
T ss_dssp HHHHHHHHHHHTTCS----------E---EEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGG
T ss_pred hHHHHHHHHHhCCCH----------H---HHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCC
Confidence 999999764211000 0 01111111000000113588 999999999999999 99999 99999
Q ss_pred CHHHHHHHHHHHHHhhccCCCCeEEEEEec---------CchHHHh-cCEEEEEeCCEE
Q 020527 249 DSESEHYVKGVLHALRNDCKTKRTVIVIAH---------RLSTIKA-VDRIVVIDDGRI 297 (325)
Q Consensus 249 D~~~~~~i~~~l~~l~~~~~~g~tvi~vtH---------~~~~~~~-~d~v~~l~~G~i 297 (325)
|+.++. +++.+. .|.|+|++|| .++.+.. ++.|.++..|+.
T Consensus 291 D~~~~~------~~~~~~--~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 291 NMLPQA------REFNEV--VGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp GGHHHH------HHHHHH--TCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CHHHHH------HHHHHh--cCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 998652 333322 3789999999 3344443 789999999964
No 79
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.92 E-value=7.6e-28 Score=220.28 Aligned_cols=147 Identities=19% Similarity=0.205 Sum_probs=94.9
Q ss_pred EEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHHHHHhcCCCCC--CCH
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKD--VKN 186 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~enl~~~~~~~--~~~ 186 (325)
.++|+||||||||||+|+|+|+.+|++|+|.++|.++... ..++.++|++|++.++ ..||.||+.|+.... ...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~---~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKT---VEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCC---CSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcc---eeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 4899999999999999999999999999999999887432 2357899999999887 679999998874321 112
Q ss_pred HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcc
Q 020527 187 EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 266 (325)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~ 266 (325)
+.+..... ..+.+.++ .+||||||||+++|||++. ++++|||+++||+.. .+.++.+++
T Consensus 81 ~~i~~~~~----~~~~~~~~---------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~- 139 (270)
T 3sop_A 81 EPIEKYIN----EQYEKFLK---------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK- 139 (270)
T ss_dssp HHHHHHHH----HHHHHHHH---------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT-
T ss_pred HHHHHHHH----HHHHhhhH---------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh-
Confidence 22333222 22222222 3599999999999999886 999999999999987 355566643
Q ss_pred CCCCeEEEEEecCchHH
Q 020527 267 CKTKRTVIVIAHRLSTI 283 (325)
Q Consensus 267 ~~~g~tvi~vtH~~~~~ 283 (325)
. .++|+|.|..+.+
T Consensus 140 --~-~~vI~Vi~K~D~l 153 (270)
T 3sop_A 140 --V-VNIIPVIAKADTM 153 (270)
T ss_dssp --T-SEEEEEETTGGGS
T ss_pred --c-CcEEEEEeccccC
Confidence 2 6889998877643
No 80
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.92 E-value=1.7e-24 Score=205.36 Aligned_cols=81 Identities=19% Similarity=0.303 Sum_probs=74.6
Q ss_pred CCChHHHHHHHHHHHHc---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcC
Q 020527 217 LLSGGQKQRIAIARAIL---------RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVD 287 (325)
Q Consensus 217 ~LSgGq~QRv~iAral~---------~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d 287 (325)
.||||||||++||++|+ .+|+||||||||++||+..+..+.+.+.++. .|+|++||. +. .||
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~------qt~i~~th~-~~--~~~ 335 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP------QAIVTGTEL-AP--GAA 335 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS------EEEEEESSC-CT--TCS
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC------cEEEEEEec-cc--cCC
Confidence 59999999999999999 8999999999999999999999999998762 599999994 44 899
Q ss_pred EEEEEeCCEEEEEcChHHH
Q 020527 288 RIVVIDDGRIIEVGNHAEL 306 (325)
Q Consensus 288 ~v~~l~~G~i~~~g~~~~l 306 (325)
++++|++|++++.|+++++
T Consensus 336 ~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 336 LTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp EEEEEETTEEEECCCTTTS
T ss_pred EEEEEECCEEEecCCHHHH
Confidence 9999999999999998876
No 81
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.92 E-value=3.8e-29 Score=233.39 Aligned_cols=202 Identities=17% Similarity=0.186 Sum_probs=136.9
Q ss_pred HHHHHHHHhHhcCCCCccccccccccCCcccEEEEEEEEECCCCCCCCceeeeeEE-----------------------e
Q 020527 49 GATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLT-----------------------I 105 (325)
Q Consensus 49 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~iL~~isl~-----------------------i 105 (325)
.++.++.+.+..+.++.. ..........|+++||++.|. ++++++++. +
T Consensus 16 ~~~~~l~~~~~~~~~~~~---~~~l~~~~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 87 (312)
T 3aez_A 16 RQWRALRMSTPLALTEEE---LVGLRGLGEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDR 87 (312)
T ss_dssp HHHHGGGTTCCCCCCHHH---HHTTCCTTCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSS
T ss_pred HHHHHHHhcCCCCCCHHH---HHhccCCCCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCC
Confidence 455666555554433211 111112233589999999994 477777764 8
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCC--
Q 020527 106 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD-- 183 (325)
Q Consensus 106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~-- 183 (325)
++|+++||+||||||||||+++|+|+++|+.|. +++++|+|++.+++.|++||+.+.....
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~ 150 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFP 150 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSG
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCC
Confidence 999999999999999999999999999998663 4699999999888669999987531111
Q ss_pred --CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 020527 184 --VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLH 261 (325)
Q Consensus 184 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~ 261 (325)
...+.+. ++++.+..+.. ......|||||+||+++|||++.+|+|||+|||++.+|+.. ..+.
T Consensus 151 ~~~d~~~~~---------~~L~~l~~~~~-~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~ 215 (312)
T 3aez_A 151 ESYNRRALM---------RFVTSVKSGSD-YACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVS 215 (312)
T ss_dssp GGBCHHHHH---------HHHHHHHTTCS-CEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGG
T ss_pred hHHHHHHHH---------HHHHHhCCCcc-cCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHH
Confidence 1112222 22322221221 11124699999999999999999999999999999998622 1122
Q ss_pred HhhccCCCCeEEEEEecCchHH-Hh-cCEEEEEeCCE
Q 020527 262 ALRNDCKTKRTVIVIAHRLSTI-KA-VDRIVVIDDGR 296 (325)
Q Consensus 262 ~l~~~~~~g~tvi~vtH~~~~~-~~-~d~v~~l~~G~ 296 (325)
++ .+ ..|+|+|+.+.. .+ ++|.+.+.+++
T Consensus 216 ~~-----~D-~~I~V~a~~~~~~~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 216 DL-----FD-FSLYVDARIEDIEQWYVSRFLAMRTTA 246 (312)
T ss_dssp GG-----CS-EEEEEEECHHHHHHHHHHHHHHHTTTG
T ss_pred Hh-----cC-cEEEEECCHHHHHHHHHHHHHHHHhcc
Confidence 22 23 458888888765 33 77776666653
No 82
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.91 E-value=1.2e-24 Score=230.25 Aligned_cols=171 Identities=16% Similarity=0.171 Sum_probs=123.2
Q ss_pred cEEEEE-----EEEECCCCCCCCceeeeeEEeeC-------CcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeC
Q 020527 79 HVQFVN-----ISFHYPSRPTVPILNHVCLTIEA-------NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL 146 (325)
Q Consensus 79 ~i~~~~-----v~~~y~~~~~~~iL~~isl~i~~-------Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i 146 (325)
.|+++| |++.|.+. ..+++|++|++++ |++++|+||||||||||||++ |++.+
T Consensus 750 ~l~i~~~rHP~l~~~~~~~--~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~------------ 814 (1022)
T 2o8b_B 750 FLELKGSRHPCITKTFFGD--DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV------------ 814 (1022)
T ss_dssp CEEEEEECCCC------CC--CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH------------
T ss_pred eEEEEeccccEEEEEecCC--ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH------------
Confidence 599999 99999432 3699999999987 999999999999999999999 99863
Q ss_pred CCCCHHHHhcceE-EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 020527 147 TDLDIRWLREKIG-FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 225 (325)
Q Consensus 147 ~~~~~~~~r~~i~-~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QR 225 (325)
..++| ||||++. ..|+.|+|.... ++.+.+.. + ...+|+++++
T Consensus 815 --------~aqiG~~Vpq~~~--~l~v~d~I~~ri----------------g~~d~~~~---~------~stf~~em~~- 858 (1022)
T 2o8b_B 815 --------MAQMGCYVPAEVC--RLTPIDRVFTRL----------------GASDRIMS---G------ESTFFVELSE- 858 (1022)
T ss_dssp --------HHTTTCCEESSEE--EECCCSBEEEEC----------------C------------------CHHHHHHHH-
T ss_pred --------HhheeEEeccCcC--CCCHHHHHHHHc----------------CCHHHHhh---c------hhhhHHHHHH-
Confidence 23566 9999873 567777764210 11111110 1 1346777665
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHH-HHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEE--EEc
Q 020527 226 IAIARAILRDPAILLLDEATSALDSESE-HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII--EVG 301 (325)
Q Consensus 226 v~iAral~~~p~llllDEPts~LD~~~~-~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~--~~g 301 (325)
+++|++++.+|+++||||||+|+|+... ..+.++++.+.+. .|+++|++||+++.+.. ||++.++ +|++. +.|
T Consensus 859 ~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~--~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~ 935 (1022)
T 2o8b_B 859 TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAET--IKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVEN 935 (1022)
T ss_dssp HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHT--SCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC---
T ss_pred HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhc--CCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEec
Confidence 9999999999999999999999999874 5578888888652 37899999999999875 8998887 48876 444
Q ss_pred Ch
Q 020527 302 NH 303 (325)
Q Consensus 302 ~~ 303 (325)
.+
T Consensus 936 ~~ 937 (1022)
T 2o8b_B 936 EC 937 (1022)
T ss_dssp --
T ss_pred Cc
Confidence 44
No 83
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.91 E-value=2.3e-26 Score=217.49 Aligned_cols=194 Identities=16% Similarity=0.133 Sum_probs=141.0
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCC-------CCH
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD-------LDI 151 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~-------~~~ 151 (325)
.++++++++.|+.. ..+++++ |+|.+||+++|+||||||||||+++|+|+.+|+.|.|.+.|++..+ ...
T Consensus 45 ~i~~~~l~~~~~tg--~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 45 PLLRQVIDQPFILG--VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp STTCCCCCSEECCS--CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred CeeecccceecCCC--CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 47899999999732 4699999 9999999999999999999999999999999999999998865211 111
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccc---cCCCCCChHHHHHHHH
Q 020527 152 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETL---VDDDLLSGGQKQRIAI 228 (325)
Q Consensus 152 ~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~LSgGq~QRv~i 228 (325)
..+++.+.+++|... +.. .++........+.+..... +.+.. .....||+|| ||+++
T Consensus 122 ~~~~~~v~~~~~~~~----~~~-------------~r~~~~~~~~~~ae~~~~~--~~~vl~~ld~~~~lS~g~-r~v~l 181 (347)
T 2obl_A 122 STLSKCVLVVTTSDR----PAL-------------ERMKAAFTATTIAEYFRDQ--GKNVLLMMDSVTRYARAA-RDVGL 181 (347)
T ss_dssp HHHTTEEEEEECTTS----CHH-------------HHHHHHHHHHHHHHHHHTT--TCEEEEEEETHHHHHHHH-HHHHH
T ss_pred hhhhceEEEEECCCC----CHH-------------HHHHHHHHHHHHHHHHHhc--cccHHHHHhhHHHHHHHH-HHHHH
Confidence 223445666666432 111 1111222222222222111 11110 0124689999 99999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCe-----EEEEEecCchHHHhcCEEEEEeCCEEEEEcCh
Q 020527 229 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR-----TVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNH 303 (325)
Q Consensus 229 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~-----tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~ 303 (325)
| +.+|++ |+|||+.....+.++++++.+. +.|. ||+++|||++ ...||++++|.+|+|+.++++
T Consensus 182 a---l~~p~~------t~Gldp~~~~~l~~ller~~~~-~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l 250 (347)
T 2obl_A 182 A---SGEPDV------RGGFPPSVFSSLPKLLERAGPA-PKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTREL 250 (347)
T ss_dssp H---TTCCCC------BTTBCHHHHHHHHHHHTTCEEC-SSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHH
T ss_pred H---cCCCCc------ccCCCHHHHHHHHHHHHHHhCC-CCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCH
Confidence 9 688887 9999999999999999988641 2477 9999999999 445999999999999999887
Q ss_pred HHH
Q 020527 304 AEL 306 (325)
Q Consensus 304 ~~l 306 (325)
.++
T Consensus 251 ~~~ 253 (347)
T 2obl_A 251 AEE 253 (347)
T ss_dssp HTT
T ss_pred HHc
Confidence 765
No 84
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.91 E-value=5e-27 Score=233.73 Aligned_cols=179 Identities=12% Similarity=0.091 Sum_probs=124.5
Q ss_pred EEEEEEEEECCCCCCCCceeeeeE-EeeCCcEEEEEcCCCChHHHHHHH--HHcCCCCCCCeEEECCEeCCCCCHHHHhc
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCL-TIEANEVVAIVGLSGSGKSTFVNL--LLRLYEPSDGQIYIDGFPLTDLDIRWLRE 156 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl-~i~~Ge~~~iiG~nGsGKSTLl~~--l~gl~~~~~G~I~i~g~~i~~~~~~~~r~ 156 (325)
++.+++.+..++ .++|+++|| .|++|++++|+||||||||||+++ ++|+++|++|.|+++|.+.. ......++
T Consensus 13 ~~~~~~~~~~~g---~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~-~~~~~~~~ 88 (525)
T 1tf7_A 13 SEHQAIAKMRTM---IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETP-QDIIKNAR 88 (525)
T ss_dssp -CCSSCCEECCC---CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCH-HHHHHHHG
T ss_pred ccccccccccCC---chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCH-HHHHHHHH
Confidence 334445443332 469999999 999999999999999999999999 78999999999999998731 12234457
Q ss_pred ceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 020527 157 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 236 (325)
Q Consensus 157 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p 236 (325)
.+||++|++... +|+.+..... .. ...++++..++.+++++.+ ..|||| +|
T Consensus 89 ~~g~~~q~~~~~-----~~l~~~~~~~-~~-~~~~~l~~~~l~~~~~~~~---------~~LS~g-------------~~ 139 (525)
T 1tf7_A 89 SFGWDLAKLVDE-----GKLFILDASP-DP-EGQEVVGGFDLSALIERIN---------YAIQKY-------------RA 139 (525)
T ss_dssp GGTCCHHHHHHT-----TSEEEEECCC-CS-SCCSCCSSHHHHHHHHHHH---------HHHHHH-------------TC
T ss_pred HcCCChHHhhcc-----CcEEEEecCc-cc-chhhhhcccCHHHHHHHHH---------HHHHHc-------------CC
Confidence 899999986521 1111100000 00 0001111222233333222 235666 48
Q ss_pred CEEEEeCCCC-----CCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHH---------Hh-cCEEEEEeC
Q 020527 237 AILLLDEATS-----ALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI---------KA-VDRIVVIDD 294 (325)
Q Consensus 237 ~llllDEPts-----~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~---------~~-~d~v~~l~~ 294 (325)
+++++||||+ +||+..++.+.++++.+++ .|+|+|++||+++.+ .. ||+|++|++
T Consensus 140 ~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~---~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 140 RRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQ---IGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp SEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHH---HTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred CEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHH---CCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 8999999998 4699999999999999975 389999999999874 45 999999998
No 85
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.90 E-value=3.2e-23 Score=195.42 Aligned_cols=75 Identities=27% Similarity=0.441 Sum_probs=67.4
Q ss_pred CCCChHHHH------HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEE
Q 020527 216 DLLSGGQKQ------RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI 289 (325)
Q Consensus 216 ~~LSgGq~Q------Rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v 289 (325)
..||||||| |+++|||++.+|++|||||||++||+..+..+.+.|+++.+ .|.|||+||||.+....||++
T Consensus 247 ~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~---~~~~vi~~sH~~~~~~~~d~~ 323 (339)
T 3qkt_A 247 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK---KIPQVILVSHDEELKDAADHV 323 (339)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGG---GSSEEEEEESCGGGGGGCSEE
T ss_pred HHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---cCCEEEEEEChHHHHHhCCEE
Confidence 569999999 67888999999999999999999999999999999999864 367999999997766679999
Q ss_pred EEEe
Q 020527 290 VVID 293 (325)
Q Consensus 290 ~~l~ 293 (325)
++|+
T Consensus 324 ~~l~ 327 (339)
T 3qkt_A 324 IRIS 327 (339)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9985
No 86
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.90 E-value=2.2e-24 Score=199.09 Aligned_cols=183 Identities=16% Similarity=0.149 Sum_probs=120.5
Q ss_pred CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCC-eEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHH
Q 020527 96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-QIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 174 (325)
Q Consensus 96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G-~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~e 174 (325)
++|+++++.+++|++++|+||||||||||++.|+|...|++| .|.+.+.+. +..++++++..++|+..+ ++.+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~---~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE---SVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS---CHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC---CHHHHHHHHHHHHcCCCh---hhcc
Confidence 489999999999999999999999999999999999999888 776654332 344555555444444322 2233
Q ss_pred HHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHH-HHHHHHHHHHcCCCCEEEEeCCCC---C---
Q 020527 175 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ-KQRIAIARAILRDPAILLLDEATS---A--- 247 (325)
Q Consensus 175 nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq-~QRv~iAral~~~p~llllDEPts---~--- 247 (325)
++..+. ...+...+. +.++++..+..... ....+|.+| +||+. |+++..+|+++|+||||+ +
T Consensus 97 ~l~~~~---~~~~~~~~~-----~~~~l~~~~l~i~~--~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~ 165 (296)
T 1cr0_A 97 SLKREI---IENGKFDQW-----FDELFGNDTFHLYD--SFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGE 165 (296)
T ss_dssp HHHHHH---HHHTHHHHH-----HHHHHSSSCEEEEC--CCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--------
T ss_pred ccccCC---CCHHHHHHH-----HHHHhccCCEEEEC--CCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCC
Confidence 333210 001111111 11222221211110 113589999 67777 999999999999999999 5
Q ss_pred CCH-HHHHHHHHHHHHhhccCCCCeEEEEEecCc--h--------------------HHH-hcCEEEEEeCCEE
Q 020527 248 LDS-ESEHYVKGVLHALRNDCKTKRTVIVIAHRL--S--------------------TIK-AVDRIVVIDDGRI 297 (325)
Q Consensus 248 LD~-~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~--~--------------------~~~-~~d~v~~l~~G~i 297 (325)
+|. .....+.+.|++++++ .|+|||++||+. + .+. .||+|++|++|+.
T Consensus 166 ~d~~~~~~~i~~~L~~la~~--~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 166 SDERKMIDNLMTKLKGFAKS--TGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ---CHHHHHHHHHHHHHHHH--HCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCHHHHHHHHHHHHHHHHHH--hCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 455 6667788888888753 488999999995 4 554 4999999998875
No 87
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.90 E-value=1.4e-23 Score=208.44 Aligned_cols=76 Identities=18% Similarity=0.299 Sum_probs=70.3
Q ss_pred CCC-ChHHHHHHHHHHHHcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEE
Q 020527 216 DLL-SGGQKQRIAIARAILRDP--AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 292 (325)
Q Consensus 216 ~~L-SgGq~QRv~iAral~~~p--~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l 292 (325)
..| ||||+|||+|||||+.+| ++|||||||+|||+.+...+.+.|+++++ |.|||+|||+++.+..||++++|
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~----~~~vi~itH~~~~~~~~d~~~~~ 470 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD----TRQVLVVTHLAQIAARAHHHYKV 470 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH----HSEEEEECCCHHHHHHSSEEEEE
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC----CCEEEEEecCHHHHHhCCEEEEE
Confidence 346 999999999999999999 99999999999999999999999999963 67999999999988889999999
Q ss_pred eCC
Q 020527 293 DDG 295 (325)
Q Consensus 293 ~~G 295 (325)
+++
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 654
No 88
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.89 E-value=1.7e-23 Score=218.41 Aligned_cols=164 Identities=25% Similarity=0.321 Sum_probs=119.9
Q ss_pred HHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCC----CC--CCCHHHHHHHHHHcC
Q 020527 124 FVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC----PK--DVKNEDIEWAAKQAY 197 (325)
Q Consensus 124 Ll~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~----~~--~~~~~~~~~~~~~~~ 197 (325)
...|..+.+.|..|+|.|+|+++..+ ..+++.+++.|.. .. ...........+ .
T Consensus 384 C~~C~g~rl~~~~~~V~i~G~~i~~~------------------~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~--~ 443 (916)
T 3pih_A 384 CSVCGGRRLNREALSVKINGLNIHEF------------------TELSISEELEFLKNLNLTEREREIVGELLKEIE--K 443 (916)
T ss_dssp CTTTCSCCBCTTGGGEEETTEEHHHH------------------HHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHH--H
T ss_pred chhcccccCChHhcCcEECCccHHHh------------------hhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHH--H
Confidence 44555667889999999999987432 1234444443210 00 000111111111 1
Q ss_pred HHHHHHhCCCCccc-ccCCCCCChHHHHHHHHHHHHcCCCC--EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEE
Q 020527 198 VHEFILSLPCGYET-LVDDDLLSGGQKQRIAIARAILRDPA--ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 274 (325)
Q Consensus 198 ~~~~~~~~~~~~~~-~~~~~~LSgGq~QRv~iAral~~~p~--llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi 274 (325)
..+++..+..++.. .....+|||||||||+|||||+++|+ +|||||||++||+.....++++|+++++ .|.|||
T Consensus 444 ~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~---~G~Tvi 520 (916)
T 3pih_A 444 RLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRD---LGNTVI 520 (916)
T ss_dssp HHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTT---TTCEEE
T ss_pred HHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHh---cCCEEE
Confidence 22455665554332 33346899999999999999999887 9999999999999999999999999964 489999
Q ss_pred EEecCchHHHhcCEEEEE------eCCEEEEEcChHHHhhcC
Q 020527 275 VIAHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLHKG 310 (325)
Q Consensus 275 ~vtH~~~~~~~~d~v~~l------~~G~i~~~g~~~~l~~~~ 310 (325)
+||||++++..||+|++| ++|++++.|+++++++..
T Consensus 521 vVtHd~~~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~~~ 562 (916)
T 3pih_A 521 VVEHDEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLKNP 562 (916)
T ss_dssp EECCCHHHHHTCSEEEEEESSSGGGCSEEEEEECHHHHHHSC
T ss_pred EEeCCHHHHHhCCEEEEEcCCcccCCCEEEEeechhhhhcCc
Confidence 999999998889999999 899999999999998753
No 89
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.88 E-value=2.1e-22 Score=210.83 Aligned_cols=168 Identities=13% Similarity=0.151 Sum_probs=119.3
Q ss_pred cEEEEEEEEECCCC--CCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHH--------HcCCCCCCCeEEECCEeCCC
Q 020527 79 HVQFVNISFHYPSR--PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLL--------LRLYEPSDGQIYIDGFPLTD 148 (325)
Q Consensus 79 ~i~~~~v~~~y~~~--~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l--------~gl~~~~~G~I~i~g~~i~~ 148 (325)
.+.+++....+-.. ....+++|++|++++|++++|+||||||||||||++ .|.+-|.++..
T Consensus 631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~--------- 701 (934)
T 3thx_A 631 RIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE--------- 701 (934)
T ss_dssp EEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE---------
T ss_pred ceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc---------
Confidence 47888876544221 124689999999999999999999999999999999 44433332211
Q ss_pred CCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 020527 149 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 228 (325)
Q Consensus 149 ~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 228 (325)
++++. .+|. .++ +.+.+. ..+|+|++++..+
T Consensus 702 ---------~~~~d---~i~~-------~ig------------------~~d~l~------------~~lStf~~e~~~~ 732 (934)
T 3thx_A 702 ---------VSIVD---CILA-------RVG------------------AGDSQL------------KGVSTFMAEMLET 732 (934)
T ss_dssp ---------EECCS---EEEE-------ECC---------------------------------------CHHHHHHHHH
T ss_pred ---------chHHH---HHHH-------hcC------------------chhhHH------------HhHhhhHHHHHHH
Confidence 11000 0110 011 001010 2378999888888
Q ss_pred HHHH--cCCCCEEEEeCCCCCCCHHHHHHH-HHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHH
Q 020527 229 ARAI--LRDPAILLLDEATSALDSESEHYV-KGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAE 305 (325)
Q Consensus 229 Aral--~~~p~llllDEPts~LD~~~~~~i-~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~ 305 (325)
|+++ +.+|+++||||||+|+|+.....+ ..+++.+.++ .|+++|++||+.+....||++..+++|++...+++++
T Consensus 733 a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~--~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~ 810 (934)
T 3thx_A 733 ASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATK--IGAFCMFATHFHELTALANQIPTVNNLHVTALTTEET 810 (934)
T ss_dssp HHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHT--TCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTE
T ss_pred HHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc--CCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCc
Confidence 8888 999999999999999999988777 6667777642 4889999999988888899999999999987766655
Q ss_pred H
Q 020527 306 L 306 (325)
Q Consensus 306 l 306 (325)
+
T Consensus 811 l 811 (934)
T 3thx_A 811 L 811 (934)
T ss_dssp E
T ss_pred E
Confidence 4
No 90
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.88 E-value=1.6e-24 Score=193.81 Aligned_cols=182 Identities=13% Similarity=0.116 Sum_probs=115.4
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHH--cCCCCCCCeEEECCEeCCCCCHHHHhc
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL--RLYEPSDGQIYIDGFPLTDLDIRWLRE 156 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~--gl~~~~~G~I~i~g~~i~~~~~~~~r~ 156 (325)
++++++++..+++- ..++.+ .|++|++++|+||||||||||+++|+ |+.++.+|.+++++.+... ......+
T Consensus 6 ~~~~~~i~tg~~~l--D~~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 79 (251)
T 2ehv_A 6 YQPVRRVKSGIPGF--DELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREMA 79 (251)
T ss_dssp --CCCEECCSCTTT--GGGTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHHH
T ss_pred ccccceeecCCHhH--HHHhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHHH
Confidence 46677777666421 123332 68999999999999999999999999 7756778888887754221 1223345
Q ss_pred ceEEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 020527 157 KIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 235 (325)
Q Consensus 157 ~i~~v~Q~~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~ 235 (325)
.++|.+|+...+ ..++.++..... .... . . ..... ...+-++..+...+..-..+
T Consensus 80 ~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~-----~-~---~~~~~-------------~~~~~~~~~~~~~~~l~~~~ 135 (251)
T 2ehv_A 80 SFGWDFEKYEKEGKIAIVDGVSSVV--GLPS-----E-E---KFVLE-------------DRFNVDNFLRYIYRVVKAIN 135 (251)
T ss_dssp TTTCCHHHHHHTTSEEEEC-------------------------------------------CCHHHHHHHHHHHHHHTT
T ss_pred HcCCChHHHhhcCCEEEEEcccccc--cccc-----c-c---ceecc-------------CcccHHHHHHHHHHHHHhhC
Confidence 688888876433 244444432210 0000 0 0 00000 11344555555555555689
Q ss_pred CCEEEEeCCCCCCC-----HHHHHHHHHHHHHhhccCCCCeEEEEEecCchHH---------H-hc-CEEEEEe
Q 020527 236 PAILLLDEATSALD-----SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI---------K-AV-DRIVVID 293 (325)
Q Consensus 236 p~llllDEPts~LD-----~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~---------~-~~-d~v~~l~ 293 (325)
|+++++||||++|| +..++.+.++++.+++ .|+|||++||+++.+ . .| |+|++|+
T Consensus 136 p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~---~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 136 AKRLVIDSIPSIALRLEEERKIREVLLKLNTILLE---MGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp CSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHH---HCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred CCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHH---CCCeEEEEECCCCCCcccccccChhhEeeeEEEEEe
Confidence 99999999999997 6677778899988865 389999999999886 4 47 9999995
No 91
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.87 E-value=6e-23 Score=204.29 Aligned_cols=153 Identities=17% Similarity=0.152 Sum_probs=113.2
Q ss_pred eEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHh-cCC
Q 020527 102 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIM-YGC 180 (325)
Q Consensus 102 sl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~-~~~ 180 (325)
+..|++|++++|+||||||||||++.++|+.+|. |+ +.+.|++|++. ..+.++.. ++.
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~~~~ee~~---~~l~~~~~~~g~ 333 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAILFAYEESR---AQLLRNAYSWGM 333 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEEEESSSCH---HHHHHHHHTTSC
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEEEEEeCCH---HHHHHHHHHcCC
Confidence 3478999999999999999999999999998874 53 11455566542 13333331 221
Q ss_pred CCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH-----HHHH
Q 020527 181 PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE-----SEHY 255 (325)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~-----~~~~ 255 (325)
..+ +. ...++ -......+..|||||+||+++|+++..+|+++|+| ||++||+. .+..
T Consensus 334 ----~~~---~~-~~~g~---------~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~ 395 (525)
T 1tf7_A 334 ----DFE---EM-ERQNL---------LKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQF 395 (525)
T ss_dssp ----CHH---HH-HHTTS---------EEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHH
T ss_pred ----CHH---HH-HhCCC---------EEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHH
Confidence 111 11 01110 00011123569999999999999999999999999 99999999 8999
Q ss_pred HHHHHHHhhccCCCCeEEEEEecCc----------hHHHh-cCEEEEEeCCE
Q 020527 256 VKGVLHALRNDCKTKRTVIVIAHRL----------STIKA-VDRIVVIDDGR 296 (325)
Q Consensus 256 i~~~l~~l~~~~~~g~tvi~vtH~~----------~~~~~-~d~v~~l~~G~ 296 (325)
+.++++.+++ .|+|+|++||+. ..+.. ||+|++|++|+
T Consensus 396 i~~ll~~l~~---~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 396 VIGVTGYAKQ---EEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHH---TTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHh---CCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 9999998865 489999999998 66654 99999999886
No 92
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.87 E-value=1.5e-23 Score=190.92 Aligned_cols=130 Identities=25% Similarity=0.337 Sum_probs=97.0
Q ss_pred CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCC-CCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHH
Q 020527 96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 174 (325)
Q Consensus 96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~-~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~e 174 (325)
++|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.... +..+++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~v~q~---------- 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSIVNQR---------- 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSEEEEE----------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcceeeeHH----------
Confidence 3899999 9999999999999999999999999999998 999999987653221 1122233321
Q ss_pred HHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHH
Q 020527 175 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 254 (325)
Q Consensus 175 nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~ 254 (325)
.. +... ..| |++|||||..+|+++++|||| |+.+..
T Consensus 79 --------------------~~-----------gl~~----~~l------~~~la~aL~~~p~illlDEp~---D~~~~~ 114 (261)
T 2eyu_A 79 --------------------EV-----------GEDT----KSF------ADALRAALREDPDVIFVGEMR---DLETVE 114 (261)
T ss_dssp --------------------EB-----------TTTB----SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHH
T ss_pred --------------------Hh-----------CCCH----HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHH
Confidence 00 1000 112 899999999999999999999 998865
Q ss_pred HHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEE
Q 020527 255 YVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 292 (325)
Q Consensus 255 ~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l 292 (325)
.+ ++.. + .|.+|++++|+.+....|||+++|
T Consensus 115 ~~---l~~~-~---~g~~vl~t~H~~~~~~~~dri~~l 145 (261)
T 2eyu_A 115 TA---LRAA-E---TGHLVFGTLHTNTAIDTIHRIVDI 145 (261)
T ss_dssp HH---HHHH-H---TTCEEEEEECCSSHHHHHHHHHHT
T ss_pred HH---HHHH-c---cCCEEEEEeCcchHHHHHHHHhhh
Confidence 43 3333 2 378999999998865567776544
No 93
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.87 E-value=2.7e-23 Score=183.62 Aligned_cols=149 Identities=22% Similarity=0.215 Sum_probs=102.0
Q ss_pred EeeCCcEEEEEcCCCChHHHHHHHHHcCCCC-------CCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHH
Q 020527 104 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-------SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI 176 (325)
Q Consensus 104 ~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~-------~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl 176 (325)
-|++|++++|+||||||||||+++|+|++.+ ..|.+++++.+. .. ++++++++|...+++.++.+|+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence 6899999999999999999999999996554 444788877542 11 2346777888777766899998
Q ss_pred hcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH-------cCCCCEEEEeCCCCCCC
Q 020527 177 MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI-------LRDPAILLLDEATSALD 249 (325)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral-------~~~p~llllDEPts~LD 249 (325)
.+.... .... +++.+..++++ ..+|+++++||||+.+|
T Consensus 95 ~~~~~~--~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~ 139 (231)
T 4a74_A 95 YVARAF--NSNH---------------------------------QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR 139 (231)
T ss_dssp EEEECC--SHHH---------------------------------HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHH
T ss_pred EEEecC--ChHH---------------------------------HHHHHHHHHHHHHHhcccCCceeEEEECChHHHhc
Confidence 764211 1111 11112222222 45999999999999999
Q ss_pred HHH------------HHHHHHHHHHhhccCCCCeEEEEEecCch----HHHh-cCEEEEEeCC
Q 020527 250 SES------------EHYVKGVLHALRNDCKTKRTVIVIAHRLS----TIKA-VDRIVVIDDG 295 (325)
Q Consensus 250 ~~~------------~~~i~~~l~~l~~~~~~g~tvi~vtH~~~----~~~~-~d~v~~l~~G 295 (325)
+.. ...+++.|.++.++ .|+|||++||... .+.. ||++++|++|
T Consensus 140 ~~~~~~~~~~~r~~~~~~~~~~l~~~~~~--~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 140 SEYIGRGALAERQQKLAKHLADLHRLANL--YDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHSCSTTHHHHHHHHHHHHHHHHHHHHHH--HTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred cccCCCcchhHHHHHHHHHHHHHHHHHHH--CCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 842 22566777776543 4899999999554 4765 9999999875
No 94
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.86 E-value=1.5e-22 Score=208.48 Aligned_cols=147 Identities=19% Similarity=0.185 Sum_probs=110.0
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC-CCCCeEEECCEeCCCCCHHHHhcc
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-PSDGQIYIDGFPLTDLDIRWLREK 157 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~-~~~G~I~i~g~~i~~~~~~~~r~~ 157 (325)
.+++++.....-...+..+++|+||+ |++++|+||||||||||+|+++|+.. ++.|.+. .. .+..
T Consensus 550 ~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v------pa-----~~~~ 615 (765)
T 1ewq_A 550 RLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV------PA-----EEAH 615 (765)
T ss_dssp SEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB------SS-----SEEE
T ss_pred cEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee------eh-----hccc
Confidence 58888874332100124699999999 99999999999999999999999974 6778642 11 1346
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH--cC
Q 020527 158 IGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI--LR 234 (325)
Q Consensus 158 i~~v~Q~~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral--~~ 234 (325)
+++++| +| ..++.||+.. .+|+|++|++.+|+++ +.
T Consensus 616 i~~v~~---i~~~~~~~d~l~~--------------------------------------g~S~~~~e~~~la~il~~a~ 654 (765)
T 1ewq_A 616 LPLFDG---IYTRIGASDDLAG--------------------------------------GKSTFMVEMEEVALILKEAT 654 (765)
T ss_dssp ECCCSE---EEEECCC--------------------------------------------CCSHHHHHHHHHHHHHHHCC
T ss_pred eeeHHH---hhccCCHHHHHHh--------------------------------------cccHHHHHHHHHHHHHHhcc
Confidence 888877 45 4566666532 2689999999999999 99
Q ss_pred CCCEEEEeCC---CCCCCHHHH-HHHHHHHHHhhccCCCCeEEEEEecCchHHHhc
Q 020527 235 DPAILLLDEA---TSALDSESE-HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV 286 (325)
Q Consensus 235 ~p~llllDEP---ts~LD~~~~-~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~ 286 (325)
+|+++||||| |++||+.+. ..+.+.+.+ .|.++|++||+.+....|
T Consensus 655 ~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~------~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 655 ENSLVLLDEVGRGTSSLDGVAIATAVAEALHE------RRAYTLFATHYFELTALG 704 (765)
T ss_dssp TTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH------HTCEEEEECCCHHHHTCC
T ss_pred CCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh------CCCEEEEEeCCHHHHHhh
Confidence 9999999999 999999875 457777765 267999999998876544
No 95
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.85 E-value=7.2e-22 Score=205.36 Aligned_cols=136 Identities=21% Similarity=0.354 Sum_probs=105.4
Q ss_pred ccccHHHHHhcCCCCCCCHH-------HHHHHHHHcCHHHHHHhCCCCcc-cccCCCCCChHHHHHHHHHHHHcCCC--C
Q 020527 168 LQMDIKSNIMYGCPKDVKNE-------DIEWAAKQAYVHEFILSLPCGYE-TLVDDDLLSGGQKQRIAIARAILRDP--A 237 (325)
Q Consensus 168 ~~~tv~enl~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~LSgGq~QRv~iAral~~~p--~ 237 (325)
..+||.|++.|......... .+.+..++ + +++..+..++. ..+...+|||||+|||+||++|..+| +
T Consensus 450 ~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~R--l-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~ 526 (972)
T 2r6f_A 450 TAMSVTEALAFFDGLELTEKEAQIARLILREIRDR--L-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGV 526 (972)
T ss_dssp HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHH--H-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSC
T ss_pred hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH--H-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCC
Confidence 36899999887421112221 11222222 2 34555555543 23344689999999999999999985 9
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEE------eCCEEEEEcChHHHhhc
Q 020527 238 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLHK 309 (325)
Q Consensus 238 llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l------~~G~i~~~g~~~~l~~~ 309 (325)
+|||||||++||+...+.+++.|+++++ .|.|||+|+||++++..||+|++| ++|++++.|+++++...
T Consensus 527 llILDEPTagLdp~~~~~L~~~L~~Lr~---~G~TVIvVeHdl~~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~~ 601 (972)
T 2r6f_A 527 LYVLDEPSIGLHQRDNDRLIATLKSMRD---LGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMND 601 (972)
T ss_dssp EEEEECTTTTCCGGGHHHHHHHHHHHHT---TTCEEEEECCCHHHHHSCSEEEEECSSSGGGCCSEEEEECTTTTTTC
T ss_pred EEEEeCcccCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCHHHHHhCCEEEEeCCCccCCCCEEEEecCHHHHHhh
Confidence 9999999999999999999999999964 589999999999998889999999 79999999999998764
No 96
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.85 E-value=3.5e-23 Score=186.26 Aligned_cols=169 Identities=12% Similarity=0.172 Sum_probs=103.4
Q ss_pred CCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHH
Q 020527 95 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIK 173 (325)
Q Consensus 95 ~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~ 173 (325)
.++|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ ..++.++|++|+. ++ ..|+.
T Consensus 12 ~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~-~~~~l~~~ 76 (245)
T 2jeo_A 12 DLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDR-FYKVLTAE 76 (245)
T ss_dssp -----------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGG-GBCCCCHH
T ss_pred ceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCc-CccccCHh
Confidence 46999999999999999999999999999999999976 555544 2467899999996 44 57999
Q ss_pred HHHhcCCCC-CC-CHH--HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCC
Q 020527 174 SNIMYGCPK-DV-KNE--DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD 249 (325)
Q Consensus 174 enl~~~~~~-~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD 249 (325)
+|+.+.... .. ..+ ......+ .++.+..... .....||+||+||+++ ++++.+|+++|+|||....|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~------~L~~l~~~~~--~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~ 147 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMHR------TLKNIVEGKT--VEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYS 147 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHHH------HHHHHHTTCC--EEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTS
T ss_pred HhhhhhccCCCCCCcccccHHHHHH------HHHHHHCCCC--eecccccccccCccCc-eEEecCCCEEEEeCcccccc
Confidence 987643211 00 010 0111111 1111111111 1125699999999988 68899999999999988887
Q ss_pred HHHHHHHHHHHHHhhccCCCCeEEEEEecCchHH-Hh-cCEEEEEeCCEEEEEcChHHHhh
Q 020527 250 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KA-VDRIVVIDDGRIIEVGNHAELLH 308 (325)
Q Consensus 250 ~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~-~~-~d~v~~l~~G~i~~~g~~~~l~~ 308 (325)
.. +.++ .+.+|+++||+...+ +. ++++ ++|+ +++++..
T Consensus 148 ~~--------l~~~-----~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~ 187 (245)
T 2jeo_A 148 QE--------IRDM-----FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILT 187 (245)
T ss_dssp HH--------HHTT-----CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHH
T ss_pred HH--------HHHh-----cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHH
Confidence 63 2222 267999999974444 44 4444 6664 5666653
No 97
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.85 E-value=1.7e-23 Score=194.29 Aligned_cols=164 Identities=16% Similarity=0.118 Sum_probs=83.9
Q ss_pred EEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcC-CCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 020527 83 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL-YEPSDGQIYIDGFPLTDLDIRWLREKIGFV 161 (325)
Q Consensus 83 ~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl-~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v 161 (325)
+||+++|+++ .++++++|+| +|+||||||||||+++|+|. ..|++| |.++|.++.. . .. .+.++++
T Consensus 2 ~~l~~~~~~~---~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t-~~-~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVHRK---SVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-T-VQ-IEASTVE 68 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEE
T ss_pred CCCcceECCE---EEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-c-ce-EeeEEEE
Confidence 4788999753 6999999998 99999999999999999998 889999 8888877643 1 11 3568999
Q ss_pred ccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEE
Q 020527 162 GQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILL 240 (325)
Q Consensus 162 ~Q~~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~lll 240 (325)
+|...++ ..|++|+..++.... ..+......+. +.+..+... .++|||||||+.+|||++ +++
T Consensus 69 ~q~~~~~~~ltv~Dt~g~~~~~~-~~e~~~~l~~~--l~~~~~~~~---------~~~sgg~rqrv~~ara~~----ll~ 132 (301)
T 2qnr_A 69 IEERGVKLRLTVVDTPGYGDAIN-CRDCFKTIISY--IDEQFERYL---------HDESGLNRRHIIDNRVHC----CFY 132 (301)
T ss_dssp EC---CCEEEEEEEEC------------CTTHHHH--HHHHHHHHH---------HHHTSSCCTTCCCCCCCE----EEE
T ss_pred ecCCCcccCcchhhhhhhhhhcC-cHHHHHHHHHH--HHHHHHHHH---------HHhCHHhhhhhhhhhhhh----eee
Confidence 9987765 689999887652210 00000001110 111111111 348999999999999986 999
Q ss_pred EeCCCCC-CCHHHHHHHHHHHHHhhccCCCCeEEEEEecCch
Q 020527 241 LDEATSA-LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS 281 (325)
Q Consensus 241 lDEPts~-LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~ 281 (325)
+||||++ ||+... +.++++.+ ..+.++|+++||+.
T Consensus 133 ldePt~~~Ld~~~~----~~l~~l~~--~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 133 FISPFGHGLKPLDV----AFMKAIHN--KVNIVPVIAKADTL 168 (301)
T ss_dssp EECSSSSSCCHHHH----HHHHHHTT--TSCEEEEECCGGGS
T ss_pred eecCcccCCCHHHH----HHHHHHHh--cCCEEEEEEeCCCC
Confidence 9999985 999863 55666643 24789999999974
No 98
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.85 E-value=9e-22 Score=191.12 Aligned_cols=74 Identities=27% Similarity=0.372 Sum_probs=67.3
Q ss_pred CCChHHHHHHHHHHHHc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEE
Q 020527 217 LLSGGQKQRIAIARAIL----RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 292 (325)
Q Consensus 217 ~LSgGq~QRv~iAral~----~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l 292 (325)
.||||||||++||++|+ .+|+++||||||++||+..+..+.+.+.++.+ .+.++|++||+...+..||+++++
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~---~~~~~ii~th~~~~~~~~d~~~~~ 409 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN---PDLQFIVISLKNTMFEKSDALVGV 409 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB---TTBEEEEECSCHHHHTTCSEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc---CCCEEEEEECCHHHHHhCCEEEEE
Confidence 39999999999999999 68999999999999999999999999998853 367999999998777779999988
Q ss_pred e
Q 020527 293 D 293 (325)
Q Consensus 293 ~ 293 (325)
.
T Consensus 410 ~ 410 (430)
T 1w1w_A 410 Y 410 (430)
T ss_dssp E
T ss_pred E
Confidence 6
No 99
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.85 E-value=2.4e-22 Score=208.10 Aligned_cols=181 Identities=20% Similarity=0.267 Sum_probs=128.6
Q ss_pred CCCChHHHHHHHHHcC---------CCCCCCeEEECCEeCCC---CCHHHHhcceEEEccCCcCccccHHHHHhcCCCCC
Q 020527 116 LSGSGKSTFVNLLLRL---------YEPSDGQIYIDGFPLTD---LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD 183 (325)
Q Consensus 116 ~nGsGKSTLl~~l~gl---------~~~~~G~I~i~g~~i~~---~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~ 183 (325)
.+..||+++.+.+... +.|.+|+|.++|+++.+ ++..+...-+.-+||++.... + +...+.
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~~-~--~~~~~~---- 342 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGH-A--ERVKNR---- 342 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSCS-T--TSSSSC----
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhcc-c--chhhcc----
Confidence 4667999999988774 34678999999998865 333333222333333332111 1 111121
Q ss_pred CCHHHHH-----HHHHHcCHHHHHHhCCCCcc-cccCCCCCChHHHHHHHHHHHHcCCC--CEEEEeCCCCCCCHHHHHH
Q 020527 184 VKNEDIE-----WAAKQAYVHEFILSLPCGYE-TLVDDDLLSGGQKQRIAIARAILRDP--AILLLDEATSALDSESEHY 255 (325)
Q Consensus 184 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~LSgGq~QRv~iAral~~~p--~llllDEPts~LD~~~~~~ 255 (325)
.....+. +..++ +. .+..+..++. ......+|||||||||+||++|..+| ++|||||||++||+...+.
T Consensus 343 ~~~~~i~~~i~~ei~~r--l~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~ 419 (842)
T 2vf7_A 343 PEQAIALQRMAADLVKR--LD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEA 419 (842)
T ss_dssp SSHHHHHHHHHHHHHHH--HH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHH
T ss_pred hhhHHHHHHHHHHHHHH--HH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHH
Confidence 1111111 12222 22 4555555533 23334689999999999999999999 5999999999999999999
Q ss_pred HHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEE------eCCEEEEEcChHHHhhc
Q 020527 256 VKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLHK 309 (325)
Q Consensus 256 i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l------~~G~i~~~g~~~~l~~~ 309 (325)
+.++++++++ .|.|||+|+||++++..||+|++| ++|++++.|+++++...
T Consensus 420 L~~~l~~L~~---~G~TVIvVeHdl~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~~ 476 (842)
T 2vf7_A 420 LLSALENLKR---GGNSLFVVEHDLDVIRRADWLVDVGPEAGEKGGEILYSGPPEGLKHV 476 (842)
T ss_dssp HHHHHHHHHT---TTCEEEEECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECGGGGGGC
T ss_pred HHHHHHHHHH---cCCEEEEEcCCHHHHHhCCEEEEeCCCcccCCCEEEEecCHHHHHhc
Confidence 9999999974 488999999999988779999999 79999999999998765
No 100
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.84 E-value=6.1e-21 Score=159.08 Aligned_cols=80 Identities=25% Similarity=0.411 Sum_probs=70.3
Q ss_pred CCCCChHHHHHHHHH------HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCE
Q 020527 215 DDLLSGGQKQRIAIA------RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDR 288 (325)
Q Consensus 215 ~~~LSgGq~QRv~iA------ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~ 288 (325)
..+||||||||++|| |||+.+|+++||||||++||+.++..+.+.+.++.+ .|.|||++|||++....||+
T Consensus 55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiiivsH~~~~~~~~d~ 131 (148)
T 1f2t_B 55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK---KIPQVILVSHDEELKDAADH 131 (148)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGG---GSSEEEEEESCGGGGGGCSE
T ss_pred hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHc---cCCEEEEEEChHHHHHhCCE
Confidence 357999999999876 999999999999999999999999999999999864 37899999999965566999
Q ss_pred EEEE--eCCEE
Q 020527 289 IVVI--DDGRI 297 (325)
Q Consensus 289 v~~l--~~G~i 297 (325)
+++| ++|..
T Consensus 132 ii~l~~~~g~s 142 (148)
T 1f2t_B 132 VIRISLENGSS 142 (148)
T ss_dssp EEEEEEETTEE
T ss_pred EEEEEcCCCeE
Confidence 9999 46643
No 101
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.84 E-value=4.4e-24 Score=215.77 Aligned_cols=191 Identities=16% Similarity=0.243 Sum_probs=120.8
Q ss_pred cEEEEEEEEECCCCCCCCceeee----------eEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC-CCCeEEECCEeCC
Q 020527 79 HVQFVNISFHYPSRPTVPILNHV----------CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYIDGFPLT 147 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~i----------sl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~-~~G~I~i~g~~i~ 147 (325)
.++++|+++.|+.+ .+++|+.+ +++++. ++|+||||||||||+++|+|++.| ++|.|+++|.++.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 47899999999642 12355544 366664 999999999999999999999988 7999999999862
Q ss_pred --CC-CHHHHhcceEEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHH
Q 020527 148 --DL-DIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK 223 (325)
Q Consensus 148 --~~-~~~~~r~~i~~v~Q~~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~ 223 (325)
.. ....+++.++|+||++.++ ..||++|+.+.. .. ..... ..+| +
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~-------------~~------~~~~~---------~~~s---~ 134 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ-------------NA------IAGEG---------MGIS---H 134 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH-------------HH------HHCSS---------SCCC---S
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHH-------------HH------hcCCc---------cccc---h
Confidence 11 1235678899999999887 579999986520 00 00000 0112 2
Q ss_pred HHHHHHHHHcCCCCEEEEeCC------CCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHH--------Hh----
Q 020527 224 QRIAIARAILRDPAILLLDEA------TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI--------KA---- 285 (325)
Q Consensus 224 QRv~iAral~~~p~llllDEP------ts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~--------~~---- 285 (325)
+++.++.+....|+++|+||| |++||+..+.++.+++.++.++ ..+.+++++||+++.+ ..
T Consensus 135 ~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~-~~~iil~vvt~~~d~a~~~~l~la~~v~~~ 213 (608)
T 3szr_A 135 ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQR-QETISLVVVPSNVDIATTEALSMAQEVDPE 213 (608)
T ss_dssp CCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTS-SSCCEEEEEESSSCTTTCHHHHHHHHHCSS
T ss_pred HHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhc-CCCCceEEEeccchhccHHHHHHHHHHhhc
Confidence 334444455668999999999 9999999999999999997543 3578999999998632 22
Q ss_pred -cCEEEEEeCCEEEEEcChHH
Q 020527 286 -VDRIVVIDDGRIIEVGNHAE 305 (325)
Q Consensus 286 -~d~v~~l~~G~i~~~g~~~~ 305 (325)
+..|.++.++.++..|+.++
T Consensus 214 g~rtI~VlTK~Dlv~~g~~~~ 234 (608)
T 3szr_A 214 GDRTIGILTKPDLVDKGTEDK 234 (608)
T ss_dssp CCSEEEEEECGGGSSSSSTTC
T ss_pred CCceEEEecchhhcCcccHHH
Confidence 24689999988877776543
No 102
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.84 E-value=1.9e-23 Score=181.25 Aligned_cols=170 Identities=18% Similarity=0.234 Sum_probs=112.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHH
Q 020527 108 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNE 187 (325)
Q Consensus 108 Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~ 187 (325)
|++++|+||||||||||+++|+|+++ ++| |.++|.+..++ ..+++++||++|+.. ++ ++++..- .....
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~--~~~~~~ig~~~~~~~---g~-~~~l~~~-~~~~~-- 69 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEV--RQGGRRIGFDVVTLS---GT-RGPLSRV-GLEPP-- 69 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEE--ETTSSEEEEEEEETT---SC-EEEEEEC-CCCCC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchh--HhhhceEEEEEEecc---cc-eehhhcc-cccCC--
Confidence 78999999999999999999999999 999 99999887543 345788999999862 11 1122110 00000
Q ss_pred HHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHH-HHHH---HHcCCCCEEEEeC--CCCCCCHHHHHHHHHH
Q 020527 188 DIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRI-AIAR---AILRDPAILLLDE--ATSALDSESEHYVKGV 259 (325)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~LSgGq~QRv-~iAr---al~~~p~llllDE--Pts~LD~~~~~~i~~~ 259 (325)
.......++ ...+|+|||+++ ++++ |++.+|+++|+|| |+..+|+...+.+.++
T Consensus 70 ------------------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~ 131 (189)
T 2i3b_A 70 ------------------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQT 131 (189)
T ss_dssp ------------------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHH
T ss_pred ------------------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHH
Confidence 000000111 135899999998 5555 6899999999999 8999999876666666
Q ss_pred HHHhhccCCCCeEEEE----EecCchHHHhcCEEEEEeCCEEEEEcChHHHhhcCHHHHHHHH
Q 020527 260 LHALRNDCKTKRTVIV----IAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVK 318 (325)
Q Consensus 260 l~~l~~~~~~g~tvi~----vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 318 (325)
+.. ..++|+ ++||.+ ...+|+|..+++|+|+..... +.+.++.++++
T Consensus 132 l~~-------~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~~~----nr~~~~~~i~~ 182 (189)
T 2i3b_A 132 LST-------PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVTKE----NRNHLLPDIVT 182 (189)
T ss_dssp HHC-------SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECCSS----SGGGHHHHHHH
T ss_pred HhC-------CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeChH----hHHHHHHHHHH
Confidence 542 224443 349875 334666666688888764321 12344555544
No 103
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.84 E-value=1.1e-21 Score=205.01 Aligned_cols=151 Identities=15% Similarity=0.194 Sum_probs=104.3
Q ss_pred cEEEEEEEEECC----CCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHH
Q 020527 79 HVQFVNISFHYP----SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL 154 (325)
Q Consensus 79 ~i~~~~v~~~y~----~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~ 154 (325)
.+.+++.....= ......+++|+||++++|++++|+||||||||||||+++++.-..
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a------------------- 700 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA------------------- 700 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH-------------------
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh-------------------
Confidence 477777654320 111246999999999999999999999999999999998642110
Q ss_pred hcceEEEccCC-------cCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHH
Q 020527 155 REKIGFVGQEP-------QLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 226 (325)
Q Consensus 155 r~~i~~v~Q~~-------~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv 226 (325)
+.-.++|+.. .+| ...+.+++ .. +...+|+|++|++
T Consensus 701 -q~g~~vpa~~~~i~~~d~i~~~ig~~d~l--------------------------~~---------~~stfs~em~~~~ 744 (918)
T 3thx_B 701 -QIGSYVPAEEATIGIVDGIFTRMGAADNI--------------------------YK---------GRSTFMEELTDTA 744 (918)
T ss_dssp -HHTCCBSSSEEEEECCSEEEEEC---------------------------------------------CCHHHHHHHHH
T ss_pred -hcCccccchhhhhhHHHHHHHhCChHHHH--------------------------HH---------hHHHhhHHHHHHH
Confidence 0011222221 111 11111111 11 0145899999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHH-HHHHHhhccCCCCeEEEEEecCchHHHhcC
Q 020527 227 AIARAILRDPAILLLDEATSALDSESEHYVK-GVLHALRNDCKTKRTVIVIAHRLSTIKAVD 287 (325)
Q Consensus 227 ~iAral~~~p~llllDEPts~LD~~~~~~i~-~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d 287 (325)
.++++ +.+|+++||||||+|||+.....+. .+++.+.++ .|+|+|++||+++.+..||
T Consensus 745 ~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~--~g~tvl~vTH~~el~~l~~ 803 (918)
T 3thx_B 745 EIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRD--VKSLTLFVTHYPPVCELEK 803 (918)
T ss_dssp HHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHT--TCCEEEEECSCGGGGGHHH
T ss_pred HHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHh--cCCeEEEEeCcHHHHHHHh
Confidence 99999 8999999999999999999888887 677777542 4889999999998765444
No 104
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.83 E-value=1.3e-20 Score=196.45 Aligned_cols=136 Identities=28% Similarity=0.376 Sum_probs=104.9
Q ss_pred ccccHHHHHhcCCCCCCCHHH--H-----HHHHHHcCHHHHHHhCCCCcc-cccCCCCCChHHHHHHHHHHHHcCC--CC
Q 020527 168 LQMDIKSNIMYGCPKDVKNED--I-----EWAAKQAYVHEFILSLPCGYE-TLVDDDLLSGGQKQRIAIARAILRD--PA 237 (325)
Q Consensus 168 ~~~tv~enl~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~LSgGq~QRv~iAral~~~--p~ 237 (325)
+.+||.|++.|.......... + .+..++ + +++..+..++. ..+...+|||||+|||+||++|..+ |+
T Consensus 467 ~~ltV~e~l~f~enl~l~~~~~~i~~~i~~ei~~R--l-~~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~ 543 (993)
T 2ygr_A 467 CELSIADCADFLNALTLGPREQAIAGQVLKEIRSR--L-GFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGV 543 (993)
T ss_dssp SHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHH--H-HHHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSC
T ss_pred hhCCHHHHHHHHHhcCCCHHHhHHHHHHHHHHHHH--H-HHHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCc
Confidence 468999999884322222211 1 111222 2 23454444432 2333468999999999999999998 59
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEE------eCCEEEEEcChHHHhhc
Q 020527 238 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLHK 309 (325)
Q Consensus 238 llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l------~~G~i~~~g~~~~l~~~ 309 (325)
+|||||||++||+...+.+.+.|+++++ .|.|||+|+||++++..||+|++| ++|++++.|+++++...
T Consensus 544 llILDEPTagLdp~~~~~L~~~L~~Lr~---~G~TVIvVeHdl~~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~~ 618 (993)
T 2ygr_A 544 LYVLDEPSIGLHQRDNRRLIETLTRLRD---LGNTLIVVEHDEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLRN 618 (993)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECCCHHHHHTCSEEEEECSSSGGGCCSCCEEECHHHHHHC
T ss_pred EEEEeCcccCCCHHHHHHHHHHHHHHHH---cCCEEEEECCCHHHHHhCCEEEEecCccccCCCEEEEeeCHHHhhhh
Confidence 9999999999999999999999999975 489999999999998889999999 79999999999999874
No 105
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.83 E-value=5.3e-22 Score=175.11 Aligned_cols=167 Identities=10% Similarity=0.024 Sum_probs=116.2
Q ss_pred CCceeeeeE-EeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHh---cceEEEccCCcCccc
Q 020527 95 VPILNHVCL-TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR---EKIGFVGQEPQLLQM 170 (325)
Q Consensus 95 ~~iL~~isl-~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r---~~i~~v~Q~~~l~~~ 170 (325)
.+.|+++.. .+++|++++|+||||||||||++.|++...+..|.|.+.+.+. +...++ ..+++.+|+....
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-- 83 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYIEK-- 83 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGBTT--
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHhhC--
Confidence 357888887 8999999999999999999999999998888888888866543 222221 2344444432110
Q ss_pred cHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC--EEEEeCCCCCC
Q 020527 171 DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA--ILLLDEATSAL 248 (325)
Q Consensus 171 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~--llllDEPts~L 248 (325)
++.+- ..... . .. +. + . ....|.++.++...+.+...+|+ ++++||||+.+
T Consensus 84 ----~~~~~--~~~~~-~-------------~~--~~-~---~-~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~ 136 (235)
T 2w0m_A 84 ----KLIII--DALMK-E-------------KE--DQ-W---S-LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALF 136 (235)
T ss_dssp ----TEEEE--ECCC--------------------CT-T---B-CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGS
T ss_pred ----CEEEE--ecccc-c-------------cC--ce-e---e-ecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhh
Confidence 11110 00000 0 00 00 0 0 02359999999888888888999 99999999888
Q ss_pred --CHHHHHHHHHHHHHhhccCCCCeEEEEEecCc--------hHHHh-cCEEEEEeCC
Q 020527 249 --DSESEHYVKGVLHALRNDCKTKRTVIVIAHRL--------STIKA-VDRIVVIDDG 295 (325)
Q Consensus 249 --D~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~--------~~~~~-~d~v~~l~~G 295 (325)
|+.....+.+.|+++.++ .|.|||++||+. ..+.. ||+|++|+..
T Consensus 137 ~~d~~~~~~~~~~l~~~~~~--~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 137 LDKPAMARKISYYLKRVLNK--WNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp SSCGGGHHHHHHHHHHHHHH--TTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHh--CCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 998889999999988654 489999999998 44654 9999999854
No 106
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.83 E-value=2.6e-22 Score=190.02 Aligned_cols=164 Identities=23% Similarity=0.231 Sum_probs=111.2
Q ss_pred Cceeee-eEEeeCCcEEEEEcCCCChHHHHHHHHHcCC--CCCC----Ce-EEECCEeCCCCCHHHHhcceEEEccCCcC
Q 020527 96 PILNHV-CLTIEANEVVAIVGLSGSGKSTFVNLLLRLY--EPSD----GQ-IYIDGFPLTDLDIRWLREKIGFVGQEPQL 167 (325)
Q Consensus 96 ~iL~~i-sl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~--~~~~----G~-I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 167 (325)
+.|+.+ ++.|++|++++|+||||||||||++.+++.. +|++ |. |+|++.+. . .++++++++|.+.+
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~--~----~~~~i~~i~q~~~~ 191 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--F----RPERIREIAQNRGL 191 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC--C----CHHHHHHHHHTTTC
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC--C----CHHHHHHHHHHcCC
Confidence 356666 6899999999999999999999999999998 6666 67 89988664 1 13568889999887
Q ss_pred ccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc-------CCCCEEE
Q 020527 168 LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL-------RDPAILL 240 (325)
Q Consensus 168 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~-------~~p~lll 240 (325)
+..++.+|+.+... .. |.+|+|++.++++++ .+|+++|
T Consensus 192 ~~~~v~~ni~~~~~--~~---------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llI 236 (349)
T 1pzn_A 192 DPDEVLKHIYVARA--FN---------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLI 236 (349)
T ss_dssp CHHHHGGGEEEEEC--CS---------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEE
T ss_pred CHHHHhhCEEEEec--CC---------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEE
Confidence 76689999877421 11 233444444444444 7899999
Q ss_pred EeCCCCCCCHHH------------HHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEEEEeCCEEEEEcC
Q 020527 241 LDEATSALDSES------------EHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 302 (325)
Q Consensus 241 lDEPts~LD~~~------------~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~ 302 (325)
+||||+++|+.. ..+++..|.++.++ .++|||+++|....... ++...+...|++++.+.
T Consensus 237 lDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~--~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 237 VDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANL--YDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp EETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHH--TTCEEEEEEECC---------------CCCCCTTC
T ss_pred EeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHH--cCcEEEEEcccccccccccCCccccCCcceEeecC
Confidence 999999999862 34555666666543 48899999998765432 33444555565554433
No 107
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.83 E-value=9.2e-25 Score=207.73 Aligned_cols=228 Identities=13% Similarity=0.129 Sum_probs=150.8
Q ss_pred EeeehHHHHhc-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccccccccc-cCCccc
Q 020527 2 AVLLGGMSIMI-GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKL-QRLMGH 79 (325)
Q Consensus 2 ~~~~g~~~v~~-g~it~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~ 79 (325)
+.+.|+|++.. |.+|.+.+.+|+.+...+..+ .+......+..+..+.+|+..++ +|........... ......
T Consensus 51 v~~~G~~~~~~~~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl--~p~~~~~~~~~~ir~~~~~~ 126 (361)
T 2gza_A 51 CERASAWEYYAVPNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR--PPACEHGTISVTIRKPSFTR 126 (361)
T ss_dssp EEETTEEEEEECTTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC--TTTBCTTCCEEEEECCCCCC
T ss_pred EEECCeEEEeCCCCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe--cCccCCCCeEEEEEecCCCC
Confidence 34557888876 899999999998887776554 22222222233344556777766 3321110000000 001112
Q ss_pred E---------EEEEEEEE---CCCCCCCCce---------eeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCe
Q 020527 80 V---------QFVNISFH---YPSRPTVPIL---------NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 138 (325)
Q Consensus 80 i---------~~~~v~~~---y~~~~~~~iL---------~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~ 138 (325)
+ ++++++|+ |+.. +.++| +++||++++|++++|+||||||||||+++|+|+++|++|.
T Consensus 127 itl~~l~~~g~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~ 205 (361)
T 2gza_A 127 RTLEDYAQQGFFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRL 205 (361)
T ss_dssp CCHHHHHHTTTTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCE
T ss_pred CCHHHHHhcCCcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceE
Confidence 4 78888888 7531 12355 9999999999999999999999999999999999999999
Q ss_pred EEECCEeCCCCCHHHHhcceEEEc-cCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCC
Q 020527 139 IYIDGFPLTDLDIRWLREKIGFVG-QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL 217 (325)
Q Consensus 139 I~i~g~~i~~~~~~~~r~~i~~v~-Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (325)
|.++|.. ++.....++.++|++ |++.+ +
T Consensus 206 I~ie~~~--e~~~~~~~~~v~~v~~q~~~~----------------------------------------~--------- 234 (361)
T 2gza_A 206 ITIEDVP--ELFLPDHPNHVHLFYPSEAKE----------------------------------------E--------- 234 (361)
T ss_dssp EEEESSS--CCCCTTCSSEEEEECC-------------------------------------------------------
T ss_pred EEECCcc--ccCccccCCEEEEeecCcccc----------------------------------------c---------
Confidence 9999852 333333567789988 55421 0
Q ss_pred CChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCC
Q 020527 218 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDG 295 (325)
Q Consensus 218 LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G 295 (325)
++++..+|-.|++++..+|+.+++|||... .+.+.+..+.. ...|++.++|..+....+||+..+..+
T Consensus 235 ~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~-------~~~~~l~~l~~---g~~~~l~t~H~~~~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 235 ENAPVTAATLLRSCLRMKPTRILLAELRGG-------EAYDFINVAAS---GHGGSITSCHAGSCELTFERLALMVLQ 302 (361)
T ss_dssp ----CCHHHHHHHHTTSCCSEEEESCCCST-------HHHHHHHHHHT---TCCSCEEEEECSSHHHHHHHHHHHHTT
T ss_pred cccccCHHHHHHHHHhcCCCEEEEcCchHH-------HHHHHHHHHhc---CCCeEEEEECCCCHHHHHHHHHHHHhc
Confidence 123345788899999999999999999862 34556666643 234789999998755568888777665
No 108
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.83 E-value=1.7e-22 Score=187.64 Aligned_cols=165 Identities=19% Similarity=0.136 Sum_probs=111.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCH----HHH--hcceEEEccCCcCc-cccHHHHHhcC
Q 020527 107 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI----RWL--REKIGFVGQEPQLL-QMDIKSNIMYG 179 (325)
Q Consensus 107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~----~~~--r~~i~~v~Q~~~l~-~~tv~enl~~~ 179 (325)
+|++++|+||||||||||+++|+|+++|++|+|.++|.++..... ..+ +..++|++|++.++ ..++++|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 699999999999999999999999999999999999998765431 222 45799999999877 46899998653
Q ss_pred CCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC--EEEEeCCCCCCCHHHHHHHH
Q 020527 180 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA--ILLLDEATSALDSESEHYVK 257 (325)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~--llllDEPts~LD~~~~~~i~ 257 (325)
.. ..... .+++.. |.. ......++..++||++||||++.+|+ ++.|| |+++ ..+.
T Consensus 181 ~~------------~~~d~-~llDt~--G~~-~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~------~~~~ 237 (304)
T 1rj9_A 181 KA------------RGYDL-LFVDTA--GRL-HTKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTG------QNGL 237 (304)
T ss_dssp HH------------HTCSE-EEECCC--CCC-TTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBC------THHH
T ss_pred Hh------------CCCCE-EEecCC--CCC-CchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHH------HHHH
Confidence 10 00000 011111 110 00001246666999999999999999 44555 4444 4445
Q ss_pred HHHHHhhccCCCCeEEEEEecCchHHH---------h-cCEEEEEeCCE
Q 020527 258 GVLHALRNDCKTKRTVIVIAHRLSTIK---------A-VDRIVVIDDGR 296 (325)
Q Consensus 258 ~~l~~l~~~~~~g~tvi~vtH~~~~~~---------~-~d~v~~l~~G~ 296 (325)
+.++++.+. .+.|+|++||+.+..+ . --.|.++-.|+
T Consensus 238 ~~~~~~~~~--~~~t~iivTh~d~~a~gg~~l~i~~~~~~pi~~ig~Ge 284 (304)
T 1rj9_A 238 EQAKKFHEA--VGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGE 284 (304)
T ss_dssp HHHHHHHHH--HCCSEEEEECTTSSCCCTTHHHHHHHHCCCEEEEECSS
T ss_pred HHHHHHHHH--cCCcEEEEECCcccccccHHHHHHHHHCCCeEEEeCCC
Confidence 556665432 3789999999854321 1 13677777775
No 109
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.82 E-value=1e-23 Score=184.78 Aligned_cols=143 Identities=11% Similarity=0.098 Sum_probs=105.1
Q ss_pred eeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc---cccHHHHHhcCC-
Q 020527 105 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL---QMDIKSNIMYGC- 180 (325)
Q Consensus 105 i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~---~~tv~enl~~~~- 180 (325)
.++|++++|+||||||||||+++|+|+++| .++|++|++.++ ..|+++++.+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999999875 589999998776 357888876532
Q ss_pred -CCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHH----HHHHHHHHHHcCCCCEEEEeCCCCC-------C
Q 020527 181 -PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ----KQRIAIARAILRDPAILLLDEATSA-------L 248 (325)
Q Consensus 181 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq----~QRv~iAral~~~p~llllDEPts~-------L 248 (325)
+.....+.+.+.++..++.+. .......+|+|| +||+++||+++.+|+++++||||++ |
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~---------~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~l 131 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALLRGLP---------VEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFV 131 (211)
T ss_dssp SGGGBCHHHHHHHHHHHHTTCC---------EEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEE
T ss_pred ChhhhhHHHHHHHHHHHHcCCC---------cCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEE
Confidence 111223333344333221111 111234689996 5789999999999999999999999 9
Q ss_pred CHHHHHHHHHHHHHhhccCCCCeEEEEEecCc
Q 020527 249 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRL 280 (325)
Q Consensus 249 D~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~ 280 (325)
|+....++.+.+.+..++ .|.|++.++|+.
T Consensus 132 d~~~~~~~~r~l~r~~~~--~g~t~~~~~~~~ 161 (211)
T 3asz_A 132 DADADERFIRRLKRDVLE--RGRSLEGVVAQY 161 (211)
T ss_dssp ECCHHHHHHHHHHHHHHH--SCCCHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 999999899988775332 478999999985
No 110
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.81 E-value=8e-21 Score=196.60 Aligned_cols=167 Identities=13% Similarity=0.122 Sum_probs=109.7
Q ss_pred cEEEEEEEEECCCC--CCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC-CCCeEEECCEeCCCCCHHHHh
Q 020527 79 HVQFVNISFHYPSR--PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYIDGFPLTDLDIRWLR 155 (325)
Q Consensus 79 ~i~~~~v~~~y~~~--~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~-~~G~I~i~g~~i~~~~~~~~r 155 (325)
.+.+++...-.=.. ++..+++|+||+ ++|++++|+||||||||||+|+++|+..+ ..| ..+.. .+
T Consensus 577 ~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~vpa-----~~ 644 (800)
T 1wb9_A 577 GIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYVPA-----QK 644 (800)
T ss_dssp CEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCBSS-----SE
T ss_pred CEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------cccch-----hc
Confidence 37777754222000 123689999999 99999999999999999999999997532 233 11111 12
Q ss_pred cceEEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 020527 156 EKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 234 (325)
Q Consensus 156 ~~i~~v~Q~~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~ 234 (325)
..+++++| +| ..++.||+..+. ..+|+++++ ++.+...+.
T Consensus 645 ~~i~~~~~---i~~~~~~~d~l~~~~-----------------------------------stf~~e~~~-~~~il~~a~ 685 (800)
T 1wb9_A 645 VEIGPIDR---IFTRVGAADDLASGR-----------------------------------STFMVEMTE-TANILHNAT 685 (800)
T ss_dssp EEECCCCE---EEEEEC----------------------------------------------CHHHHHH-HHHHHHHCC
T ss_pred ccceeHHH---HHhhCCHHHHHHhhh-----------------------------------hhhhHHHHH-HHHHHHhcc
Confidence 34666665 44 456666653320 125677664 444455689
Q ss_pred CCCEEEEeCCCCCCCHHHHHHH-HHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEE
Q 020527 235 DPAILLLDEATSALDSESEHYV-KGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRII 298 (325)
Q Consensus 235 ~p~llllDEPts~LD~~~~~~i-~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~ 298 (325)
+|+++|||||++|+|+.....+ .++++.+.++ .|.++|++||+.+....||++..+.+|++.
T Consensus 686 ~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~--~g~~vl~~TH~~el~~l~d~~~~v~n~~~~ 748 (800)
T 1wb9_A 686 EYSLVLMDEIGRGTSTYDGLSLAWACAENLANK--IKALTLFATHYFELTQLPEKMEGVANVHLD 748 (800)
T ss_dssp TTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHT--TCCEEEEECSCGGGGGHHHHSTTEEEEEEE
T ss_pred CCCEEEEECCCCCCChhHHHHHHHHHHHHHHhc--cCCeEEEEeCCHHHHHHhhhhhceEEEEEE
Confidence 9999999999999999766664 6778877642 378999999999877778776555666554
No 111
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.80 E-value=2e-22 Score=175.53 Aligned_cols=170 Identities=20% Similarity=0.227 Sum_probs=96.4
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCC-----CCCCCeEEEC-------CEeC
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY-----EPSDGQIYID-------GFPL 146 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~-----~~~~G~I~i~-------g~~i 146 (325)
.|+++|++|.|+. .++++ |.+++|..++|+|+||||||||++.|+|.. .|+.|.+.+. +..+
T Consensus 3 ~l~~~~~~~~~~~----~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l 76 (210)
T 1pui_A 3 NLNYQQTHFVMSA----PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRL 76 (210)
T ss_dssp --------CEEEE----SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEE
T ss_pred chhhhhhhheeec----CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEE
Confidence 4789999999962 47888 889999999999999999999999999998 7888877642 2222
Q ss_pred C---CCC--------HHHHhcceEEEccCCcCcc-ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccc-cc
Q 020527 147 T---DLD--------IRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET-LV 213 (325)
Q Consensus 147 ~---~~~--------~~~~r~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 213 (325)
. ... ...+++.+++++|....+. ..+..++..+ ..... .+ +.+++......... .-
T Consensus 77 ~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~----~~~~~-~~------~~~~~~~~~~~~~~v~n 145 (210)
T 1pui_A 77 VDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHP----LKDLD-QQ------MIEWAVDSNIAVLVLLT 145 (210)
T ss_dssp EECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSC----CCHHH-HH------HHHHHHHTTCCEEEEEE
T ss_pred EECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCC----CchhH-HH------HHHHHHHcCCCeEEEEe
Confidence 1 110 0122333444444322221 1222222221 11111 01 11122221111000 00
Q ss_pred CCCCCChHHHHH-HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc
Q 020527 214 DDDLLSGGQKQR-IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRN 265 (325)
Q Consensus 214 ~~~~LSgGq~QR-v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~ 265 (325)
....+|+||+|| +..+++++.+|+++++|||||++|+.....+++.|.++.+
T Consensus 146 K~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 146 KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred cccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 124589999999 8999999999999999999999999999999999988764
No 112
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.80 E-value=1.2e-20 Score=178.88 Aligned_cols=146 Identities=23% Similarity=0.267 Sum_probs=100.9
Q ss_pred EEEEEECCCCCCCCceeeeeE-------EeeCCcEEEEEcCCCChHHHHHHHHHcCCCCC-CCeEEECCEeCCCCCHHHH
Q 020527 83 VNISFHYPSRPTVPILNHVCL-------TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYIDGFPLTDLDIRWL 154 (325)
Q Consensus 83 ~~v~~~y~~~~~~~iL~~isl-------~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~-~G~I~i~g~~i~~~~~~~~ 154 (325)
.+++++|... ..+.|+++.+ .+.+|++++|+||||||||||+++|+|+++|+ .|.|...+.++ ++. .
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~ 166 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---H 166 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---C
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---h
Confidence 4566665332 2356777766 67889999999999999999999999999987 56665444333 221 1
Q ss_pred hcceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 020527 155 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 234 (325)
Q Consensus 155 r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~ 234 (325)
+...++++|...... . ++-.+ +|||||.+
T Consensus 167 ~~~~~~v~q~~~~~~-------------~----------------------------------~~~~~----~La~aL~~ 195 (356)
T 3jvv_A 167 ESKKCLVNQREVHRD-------------T----------------------------------LGFSE----ALRSALRE 195 (356)
T ss_dssp CCSSSEEEEEEBTTT-------------B----------------------------------SCHHH----HHHHHTTS
T ss_pred hccccceeeeeeccc-------------c----------------------------------CCHHH----HHHHHhhh
Confidence 233455665432110 0 01111 99999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeC
Q 020527 235 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 294 (325)
Q Consensus 235 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~ 294 (325)
+|++|++|||| |+++...+. ++.. .|+++++++|+.+.+..|||++.|..
T Consensus 196 ~PdvillDEp~---d~e~~~~~~----~~~~---~G~~vl~t~H~~~~~~~~dRli~l~~ 245 (356)
T 3jvv_A 196 DPDIILVGEMR---DLETIRLAL----TAAE---TGHLVFGTLHTTSAAKTIDRVVDVFP 245 (356)
T ss_dssp CCSEEEESCCC---SHHHHHHHH----HHHH---TTCEEEEEESCSSHHHHHHHHHHTSC
T ss_pred CcCEEecCCCC---CHHHHHHHH----HHHh---cCCEEEEEEccChHHHHHHHHhhhcC
Confidence 99999999999 766644333 3332 48899999999998877899887744
No 113
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.79 E-value=3.8e-22 Score=189.79 Aligned_cols=177 Identities=16% Similarity=0.106 Sum_probs=125.8
Q ss_pred ceeeeeEEeeC--CcEEEEEcCCCChHHHHHHHHHcCCCCCC----CeEEEC----CEeCCCCCHHHHhcceEEEccCCc
Q 020527 97 ILNHVCLTIEA--NEVVAIVGLSGSGKSTFVNLLLRLYEPSD----GQIYID----GFPLTDLDIRWLREKIGFVGQEPQ 166 (325)
Q Consensus 97 iL~~isl~i~~--Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~----G~I~i~----g~~i~~~~~~~~r~~i~~v~Q~~~ 166 (325)
+.+.|+++|++ |++++|+||||||||||+++|+|+++|++ |+|+++ |.++ .....++ ++|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 45779999999 99999999999999999999999999999 999873 5444 3333444 45999999888
Q ss_pred CccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc-CCCCEEEEeC--
Q 020527 167 LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL-RDPAILLLDE-- 243 (325)
Q Consensus 167 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~-~~p~llllDE-- 243 (325)
+|..|+.+|+.++.. .... . . .. .+|+|++||..+++++. .+|++++|||
T Consensus 235 ~~~~t~~~nl~~~~~---~~~~--~---~-----~~--------------~~~~~~~~~~~i~~~~~~~~~~lllLdE~~ 287 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDT---DFIT--T---Q-----AF--------------CIQYEGKAHPFLDSMIKEYPFDVTILLKNN 287 (365)
T ss_dssp HHHHHHCSSEEEESS---CHHH--H---H-----HH--------------HHHHHSCCCHHHHHHHHHSCCSEEEEEECC
T ss_pred HHHHhccCCEEEEeC---CchH--H---H-----HH--------------HHHHcCCCCHHHHHHHhhcCCCEEEECCCC
Confidence 788899999987521 1110 0 0 00 13567788888888874 6999999999
Q ss_pred -CC------CCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHH
Q 020527 244 -AT------SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAEL 306 (325)
Q Consensus 244 -Pt------s~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l 306 (325)
|+ +++|+..+..+.+.|.++.++ .+.++++++|.-...+.++++..+++ ++..++++++
T Consensus 288 ~p~~~~g~~~sld~~~r~~l~~~l~~l~~~--~~~~ililde~~~~~r~~~~i~~i~~--~l~~~~~~~~ 353 (365)
T 1lw7_A 288 TEWVDDGLRSLGSQKQRQQFQQLLKKLLDK--YKVPYIEIESPSYLDRYNQVKAVIEK--VLNEEEISEL 353 (365)
T ss_dssp CC-----------CCSHHHHHHHHHHHHHG--GGCCCEEEECSSHHHHHHHHHHHHHH--HTSCCCCSSC
T ss_pred CCcccCCCcCCccHHHHHHHHHHHHHHHHH--cCCCEEEeCCCCHHHHHHHHHHHHHH--HhcccchhHh
Confidence 65 589999999999999887542 36799999986333334666655543 3334455544
No 114
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.78 E-value=1.2e-20 Score=182.08 Aligned_cols=164 Identities=20% Similarity=0.157 Sum_probs=99.7
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 158 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i 158 (325)
.|.++||+++|+++ .+++++||+| +|+||||||||||+++|+|+..|..| .+|..+... ....+..+
T Consensus 11 ~l~~~~l~~~y~~~---~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~-~t~~~~~i 77 (418)
T 2qag_C 11 YVGFANLPNQVYRK---SVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIK-KTVQVEQS 77 (418)
T ss_dssp ----CCCCCCTTTT---TCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEEE
T ss_pred cEEEEecceeECCE---EEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCc-cceeeeeE
Confidence 58999999999753 6999999998 99999999999999999999886665 233322211 11123568
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC
Q 020527 159 GFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 237 (325)
Q Consensus 159 ~~v~Q~~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ 237 (325)
++++|++.++ ..||+||+.++... ........ +.++++. .++.+++||++||||++.+|+
T Consensus 78 ~~v~q~~~~~~~Ltv~Dt~g~~~~~--~~~~~~~~-----i~~~i~~------------~~~~~l~qr~~IaRal~~d~~ 138 (418)
T 2qag_C 78 KVLIKEGGVQLLLTIVDTPGFGDAV--DNSNCWQP-----VIDYIDS------------KFEDYLNAESRVNRRQMPDNR 138 (418)
T ss_dssp ECC------CEEEEEEECC-------------CHH-----HHHHHHH------------HHHHHTTTSCC-CCCCCCCC-
T ss_pred EEEEecCCcccceeeeechhhhhhc--cchhhHHH-----HHHHHHH------------HHHHHHHHHHHHHHHhccCCC
Confidence 9999988776 68999998876321 11110011 1122221 256778899999999999999
Q ss_pred ---EEEEeCCC-CCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchH
Q 020527 238 ---ILLLDEAT-SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST 282 (325)
Q Consensus 238 ---llllDEPt-s~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~ 282 (325)
++++|||| ++||+... ++++.+. .+.++|+|.|..+.
T Consensus 139 ~~vlL~ldePt~~~L~~~d~----~~lk~L~----~~v~iIlVinK~Dl 179 (418)
T 2qag_C 139 VQCCLYFIAPSGHGLKPLDI----EFMKRLH----EKVNIIPLIAKADT 179 (418)
T ss_dssp CCEEEEECCC-CCSCCHHHH----HHHHHHT----TTSEEEEEEESTTS
T ss_pred eeEEEEEecCcccCCCHHHH----HHHHHHh----ccCcEEEEEEcccC
Confidence 99999999 69998763 4455553 25677888776553
No 115
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.78 E-value=9.2e-22 Score=167.97 Aligned_cols=137 Identities=15% Similarity=0.195 Sum_probs=95.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCCCCC---CCeEEECCEeCCCCC---HHHHh-cceE----EEccCCcCccccHHHHHh
Q 020527 109 EVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLD---IRWLR-EKIG----FVGQEPQLLQMDIKSNIM 177 (325)
Q Consensus 109 e~~~iiG~nGsGKSTLl~~l~gl~~~~---~G~I~i~g~~i~~~~---~~~~r-~~i~----~v~Q~~~l~~~tv~enl~ 177 (325)
++++|+|+||||||||+++|+|+++|+ .|.|.++|.++.+++ ...+| ++++ +++|++.+| +.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 589999999999999999999999998 899999999876654 44566 4677 889988766 111
Q ss_pred cCCCCCCCHHHHHHHHHHcCHHHHHHh-CCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEE-------EEeCCCC---
Q 020527 178 YGCPKDVKNEDIEWAAKQAYVHEFILS-LPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL-------LLDEATS--- 246 (325)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ll-------llDEPts--- 246 (325)
+ .. .. .+++.+++.+ ++ ++++.+.+. |||||+||++||||++.+|++. .=|.|..
T Consensus 77 -~-----~~-~~-----~a~l~~~i~~~l~-g~dt~i~Eg-lSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~ 142 (171)
T 2f1r_A 77 -V-----SE-EE-----GNDLDWIYERYLS-DYDLVITEG-FSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHK 142 (171)
T ss_dssp -C-----CH-HH-----HTCHHHHHHHHTT-TCSEEEEES-CGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSC
T ss_pred -C-----Ch-hh-----hhCHHHHHHhhCC-CCCEEEECC-cCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCc
Confidence 1 11 11 5688889988 88 888888764 9999999999999999999873 2244432
Q ss_pred CCCHHHHHHHHHHHHHhhc
Q 020527 247 ALDSESEHYVKGVLHALRN 265 (325)
Q Consensus 247 ~LD~~~~~~i~~~l~~l~~ 265 (325)
-+|......+.+.+.+..+
T Consensus 143 ~f~~~~~~~~a~~i~~~~~ 161 (171)
T 2f1r_A 143 WFRRDEVERIAEFILSLLR 161 (171)
T ss_dssp EECTTCHHHHHHHHHHHHT
T ss_pred ccCcccHHHHHHHHHHHHh
Confidence 2334445667777755543
No 116
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.76 E-value=6.6e-19 Score=161.15 Aligned_cols=153 Identities=15% Similarity=0.163 Sum_probs=97.1
Q ss_pred EeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHH-hcCCCC
Q 020527 104 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI-MYGCPK 182 (325)
Q Consensus 104 ~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl-~~~~~~ 182 (325)
.+++|++++|+||||||||||++.+++... .|.+. .|.+... ...+.|+..+... ..+...+ .++.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~-- 92 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGA-- 92 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHT--
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC------CccEEEEECCCCH--HHHHHHHHHHHh--
Confidence 478999999999999999999999998664 57663 3543321 2357777655432 1122222 1221
Q ss_pred CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCC--CCCHHHH---HHHH
Q 020527 183 DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATS--ALDSESE---HYVK 257 (325)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts--~LD~~~~---~~i~ 257 (325)
...........+...+.+ ........||+||+|++ ++++.+|+++++||||+ ++|+... .+++
T Consensus 93 ~~~~~~~~~~~~~l~l~~---------~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~ 160 (279)
T 1nlf_A 93 HLSAEERQAVADGLLIQP---------LIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVI 160 (279)
T ss_dssp TSCHHHHHHHHHHEEECC---------CTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHH
T ss_pred hcChhhhhhccCceEEee---------cCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHH
Confidence 112222222223222111 11122357999998865 68889999999999999 9998544 7777
Q ss_pred HHHHHhhccCCCCeEEEEEecCchHH
Q 020527 258 GVLHALRNDCKTKRTVIVIAHRLSTI 283 (325)
Q Consensus 258 ~~l~~l~~~~~~g~tvi~vtH~~~~~ 283 (325)
+.|.++.++ .|+|||+++|+....
T Consensus 161 ~~L~~l~~~--~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 161 GRMEAIAAD--TGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHH--HCCEEEEEEEC----
T ss_pred HHHHHHHHH--cCCEEEEEecCCCcc
Confidence 888887643 488999999998654
No 117
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.75 E-value=7.2e-20 Score=162.29 Aligned_cols=142 Identities=11% Similarity=0.098 Sum_probs=99.7
Q ss_pred EEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC--CCCeEEECCEeCCCCCHHHHhcceEEEccCCcCcc-ccH----HHH
Q 020527 103 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP--SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDI----KSN 175 (325)
Q Consensus 103 l~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~--~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~tv----~en 175 (325)
-..++|++++|+||||||||||+++|+|+++| .+|.|.+.+.+... ..+..++|+||++..|. .++ .||
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~ 86 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEH 86 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHH
Confidence 35789999999999999999999999999986 68999988866432 12567999999988774 566 455
Q ss_pred HhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHH
Q 020527 176 IMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHY 255 (325)
Q Consensus 176 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~ 255 (325)
+.+...... .| +++ ++.++..++++||| ||+.+..+
T Consensus 87 ~~~~~~~yg---------------------------------~~---~~~---v~~~l~~G~illLD-----LD~~~~~~ 122 (219)
T 1s96_A 87 AEVFGNYYG---------------------------------TS---REA---IEQVLATGVDVFLD-----IDWQGAQQ 122 (219)
T ss_dssp EEETTEEEE---------------------------------EE---HHH---HHHHHTTTCEEEEE-----CCHHHHHH
T ss_pred HHHHhccCC---------------------------------CC---HHH---HHHHHhcCCeEEEE-----ECHHHHHH
Confidence 543210000 01 111 22333457999999 99999988
Q ss_pred HHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeCCEEEEEcChHHHh
Q 020527 256 VKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL 307 (325)
Q Consensus 256 i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~ 307 (325)
+.+.+. .+.||+++||+++.+.. |+ +.+| .++++++.
T Consensus 123 i~~~l~-------~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~ 159 (219)
T 1s96_A 123 IRQKMP-------HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIA 159 (219)
T ss_dssp HHHHCT-------TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHH
T ss_pred HHHHcc-------CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHH
Confidence 887764 37899999999998754 22 5666 46777664
No 118
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.74 E-value=2.6e-19 Score=172.60 Aligned_cols=179 Identities=16% Similarity=0.169 Sum_probs=114.4
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcE--EEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhc
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEV--VAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 156 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~--~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~ 156 (325)
.+++++ +++|++. + |+++||++++|++ ++|+||||||||||+++|+|+. ++|.++........++
T Consensus 16 ~l~~~~-~~~y~~~---~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~ 82 (427)
T 2qag_B 16 TVPLAG-HVGFDSL---P-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQ 82 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEE
T ss_pred eEEEee-EEEECCe---e-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEe
Confidence 366677 8889642 5 9999999999999 9999999999999999999984 3444443322223356
Q ss_pred ceEEEccCCcCc-cccHHHHHhcCCCCCCCHHH----HHHHHHHcCHHHHHHhC-C------CCcccc----c---C--C
Q 020527 157 KIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNED----IEWAAKQAYVHEFILSL-P------CGYETL----V---D--D 215 (325)
Q Consensus 157 ~i~~v~Q~~~l~-~~tv~enl~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~------~~~~~~----~---~--~ 215 (325)
.++|++|++.++ ..||.||+.++.. ..... +...++ ..+.+++... . ...+.. + . .
T Consensus 83 ~i~~v~Q~~~l~~~ltv~D~~~~g~~--~~~~~~~~~i~~~i~-~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~ 159 (427)
T 2qag_B 83 SNTYDLQESNVRLKLTIVSTVGFGDQ--INKEDSYKPIVEFID-AQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTG 159 (427)
T ss_dssp EEEEEEEC--CEEEEEEEEEECCCC---CCHHHHSHHHHHHHH-HHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC
T ss_pred eEEEEeecCccccccchhhhhhhhhc--cccchhhhHHHHHHH-HHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCC
Confidence 799999999887 6899999988742 22211 111111 1122333332 1 111111 1 1 1
Q ss_pred CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH-hhccCCCCeEEEEEecC
Q 020527 216 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHA-LRNDCKTKRTVIVIAHR 279 (325)
Q Consensus 216 ~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~-l~~~~~~g~tvi~vtH~ 279 (325)
..|+-.. +.++++|..+++++++|||+..|.+.....+.+.+++ +.. .|.+|+.++.|
T Consensus 160 ~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~---~gi~I~~is~~ 218 (427)
T 2qag_B 160 HSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVS---NGVQIYQFPTD 218 (427)
T ss_dssp ---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBT---TBCCCCCCC--
T ss_pred CCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHH---cCCcEEecCCC
Confidence 2466555 7999999999999999999999999888888888876 643 58899999865
No 119
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.73 E-value=1.3e-17 Score=142.48 Aligned_cols=78 Identities=26% Similarity=0.389 Sum_probs=68.0
Q ss_pred CCCChHHHHHHHHHHHHc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEE
Q 020527 216 DLLSGGQKQRIAIARAIL----RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVV 291 (325)
Q Consensus 216 ~~LSgGq~QRv~iAral~----~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~ 291 (325)
..||||||||++|||+|+ .+|+++||||||++||+.+...+.+.|+++.+ +.++|+|||+...+..||+++.
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~----~~~~ivith~~~~~~~ad~i~~ 138 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK----ESQFIVITLRDVMMANADKIIG 138 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT----TSEEEEECSCHHHHTTCSEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc----CCEEEEEEecHHHHHhCCEEEE
Confidence 469999999999999997 45799999999999999999999999998853 4589999999888778999985
Q ss_pred E--eCCEE
Q 020527 292 I--DDGRI 297 (325)
Q Consensus 292 l--~~G~i 297 (325)
+ .+|..
T Consensus 139 v~~~~g~s 146 (173)
T 3kta_B 139 VSMRDGVS 146 (173)
T ss_dssp EEEETTEE
T ss_pred EEecCCEE
Confidence 5 56753
No 120
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.72 E-value=4.5e-17 Score=142.52 Aligned_cols=152 Identities=17% Similarity=0.118 Sum_probs=97.3
Q ss_pred CceeeeeE-EeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHH
Q 020527 96 PILNHVCL-TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 174 (325)
Q Consensus 96 ~iL~~isl-~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~e 174 (325)
+.|+.+.. .+++|++++|+||||||||||++.+++ ++..+.++++..+ ..+.. .+.+
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~------------------~~~~ 64 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPE------------------RLVQ 64 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHH------------------HHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHH------------------HHHH
Confidence 45666665 689999999999999999999999999 3333334433221 01111 1111
Q ss_pred HHh-cCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHH--HHHHHHHHHHcCC-CCEEEEeCCCCCCCH
Q 020527 175 NIM-YGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ--KQRIAIARAILRD-PAILLLDEATSALDS 250 (325)
Q Consensus 175 nl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq--~QRv~iAral~~~-p~llllDEPts~LD~ 250 (325)
... ++ ...+ ++.+.+.. ..+|+++ +|+++.+++++.+ |+++++||||+.+|+
T Consensus 65 ~~~~~~----~~~~------------~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~ 120 (220)
T 2cvh_A 65 MAETRG----LNPE------------EALSRFIL--------FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRA 120 (220)
T ss_dssp HHHTTT----CCHH------------HHHHHEEE--------ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTG
T ss_pred HHHhcC----CChH------------HHhhcEEE--------EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhh
Confidence 111 11 1111 11111110 1245553 6788899999986 999999999999997
Q ss_pred HHH--------HHHHHHHHHhhccCCCCeEEEEEecCch-------------HHHh-cCEEEEEeCC
Q 020527 251 ESE--------HYVKGVLHALRNDCKTKRTVIVIAHRLS-------------TIKA-VDRIVVIDDG 295 (325)
Q Consensus 251 ~~~--------~~i~~~l~~l~~~~~~g~tvi~vtH~~~-------------~~~~-~d~v~~l~~G 295 (325)
... ..+.+.|+++.++ .++|+|+++|... .+.. ||++++|+..
T Consensus 121 ~~~~~~~~~~~~~~~~~L~~l~~~--~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 121 EENRSGLIAELSRQLQVLLWIARK--HNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGGSSTTHHHHHHHHHHHHHHHHH--HTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred cCchHHHHHHHHHHHHHHHHHHHH--cCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 432 3355556666543 3789999999865 3444 9999999854
No 121
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.72 E-value=9.3e-19 Score=166.93 Aligned_cols=126 Identities=23% Similarity=0.334 Sum_probs=94.2
Q ss_pred ceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCC-CCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHH
Q 020527 97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSN 175 (325)
Q Consensus 97 iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~-~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~en 175 (325)
+|++++ +++|++++|+||||||||||+++|+|+++|+ +|+|.+.+.++. + .++..+++++|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~---------- 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQRE---------- 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEE----------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeee----------
Confidence 566655 7899999999999999999999999999998 899988776553 2 2456788998851
Q ss_pred HhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHH
Q 020527 176 IMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHY 255 (325)
Q Consensus 176 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~ 255 (325)
++ .. + ..| +.+|+++|..+|+++++|||+ |+++..
T Consensus 191 --~g------------------~~------~---------~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~- 225 (372)
T 2ewv_A 191 --VG------------------ED------T---------KSF------ADALRAALREDPDVIFVGEMR---DLETVE- 225 (372)
T ss_dssp --BT------------------TT------B---------SCS------HHHHHHHTTSCCSEEEESCCC---SHHHHH-
T ss_pred --cC------------------CC------H---------HHH------HHHHHHHhhhCcCEEEECCCC---CHHHHH-
Confidence 11 00 0 124 469999999999999999999 776543
Q ss_pred HHHHHHHhhccCCCCeEEEEEecCchHHHhcCEE
Q 020527 256 VKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI 289 (325)
Q Consensus 256 i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v 289 (325)
..++.. ..|.+++.++|+.+....|||+
T Consensus 226 --~~l~~~----~~g~~vi~t~H~~~~~~~~~rl 253 (372)
T 2ewv_A 226 --TALRAA----ETGHLVFGTLHTNTAIDTIHRI 253 (372)
T ss_dssp --HHHHHH----TTTCEEEECCCCCSHHHHHHHH
T ss_pred --HHHHHH----hcCCEEEEEECcchHHHHHHHH
Confidence 344443 2478999999997744446664
No 122
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.72 E-value=1.6e-20 Score=163.64 Aligned_cols=158 Identities=19% Similarity=0.289 Sum_probs=106.1
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHcCCC-------------CCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccH
Q 020527 106 EANEVVAIVGLSGSGKSTFVNLLLRLYE-------------PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDI 172 (325)
Q Consensus 106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~-------------~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv 172 (325)
++|++++|+||||||||||+++|+|+++ |..|+ ++|.++...+...+++.+ +|+..++..++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~~ 76 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAEF 76 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeeee
Confidence 5799999999999999999999999886 78887 578777666777777654 68888888888
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH-HHcCCCCEEEEeCCCCCCCHH
Q 020527 173 KSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR-AILRDPAILLLDEATSALDSE 251 (325)
Q Consensus 173 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr-al~~~p~llllDEPts~LD~~ 251 (325)
.+|+ +|. ..+.+.++++..... +.+..+.|+.+.. + +++ .|| +++.+|++++|||||+++|..
T Consensus 77 ~~n~-~g~----~~~~i~~~~~~~~~~-~~~~~~~g~~~~~--------~-~~~-~~~~~~l~~p~~~ilde~~~~~d~~ 140 (198)
T 1lvg_A 77 SGNL-YGT----SKEAVRAVQAMNRIC-VLDVDLQGVRSIK--------K-TDL-CPIYIFVQPPSLDVLEQRLRLRNTE 140 (198)
T ss_dssp TTEE-EEE----EHHHHHHHHHTTCEE-EEECCHHHHHHHT--------T-SSC-CCEEEEEECSCHHHHHHHHHHHTCS
T ss_pred cCcc-CCC----CHHHHHHHHHcCCcE-EEECCHHHHHHHH--------h-cCC-CcEEEEEeCCCHHHHHHHHHhcCCC
Confidence 8887 652 244455554431100 0000000000000 0 012 566 788899999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCEEEEEeC
Q 020527 252 SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 294 (325)
Q Consensus 252 ~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~v~~l~~ 294 (325)
+.+.+.+.|....++ +.++| +. ..+|+|+++++
T Consensus 141 ~e~~i~~~l~~~~~~-------~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 141 TEESLAKRLAAARTD-------MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp CHHHHHHHHHHHHHH-------TTGGG--ST-TTCSEEEECSS
T ss_pred CHHHHHHHHHHHHHH-------HHHhh--cc-CCceEEEECCC
Confidence 999999988877542 23456 22 56999887763
No 123
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.70 E-value=6.8e-20 Score=157.59 Aligned_cols=141 Identities=16% Similarity=0.063 Sum_probs=90.3
Q ss_pred EeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCC-
Q 020527 104 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK- 182 (325)
Q Consensus 104 ~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~- 182 (325)
.+++|++++|+||||||||||+++|+|. |+.|.|.++|.++.... ..++.++|++|++. ...++.+|+.+....
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~--~~~~~~~~~~~~~~-~~~~v~~~l~~~~~~~ 79 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYI--KHGRIDPWLPQSHQ-QNRMIMQIAADVAGRY 79 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTC--CSSCCCTTSSSHHH-HHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhh--hcccccCCccchhh-hhHHHHHHHHHHHHHH
Confidence 4789999999999999999999999998 78999999987653211 11234678888654 356888887542000
Q ss_pred --CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 020527 183 --DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL 260 (325)
Q Consensus 183 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l 260 (325)
......+........+..+.. . ......+|+|++||+++||++.++|+++ +|+...+.+.+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~l~~~~~-~------~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~ 144 (191)
T 1zp6_A 80 AKEGYFVILDGVVRPDWLPAFTA-L------ARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQF 144 (191)
T ss_dssp HHTSCEEEECSCCCTTTTHHHHT-T------CSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHT
T ss_pred hccCCeEEEeccCcHHHHHHHHh-c------CCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHH
Confidence 000000000000001111110 0 0011359999999999999999999876 6888777777776
Q ss_pred HHhh
Q 020527 261 HALR 264 (325)
Q Consensus 261 ~~l~ 264 (325)
..+.
T Consensus 145 ~~l~ 148 (191)
T 1zp6_A 145 ADLG 148 (191)
T ss_dssp TCCG
T ss_pred hccC
Confidence 6553
No 124
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.68 E-value=6e-20 Score=171.58 Aligned_cols=152 Identities=16% Similarity=0.145 Sum_probs=103.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCC--------CCCCCeEEECCEeCCCCC---------------HHHHhcceEEE---c
Q 020527 109 EVVAIVGLSGSGKSTFVNLLLRLY--------EPSDGQIYIDGFPLTDLD---------------IRWLREKIGFV---G 162 (325)
Q Consensus 109 e~~~iiG~nGsGKSTLl~~l~gl~--------~~~~G~I~i~g~~i~~~~---------------~~~~r~~i~~v---~ 162 (325)
++++|+|+||||||||+|.|+|+. .|+.|+|.+||.++...+ ..++++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999997 789999999999886542 23456678888 6
Q ss_pred cCCcC-ccccHHHHHhcCCCCCCCHHHHHHH-------HHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 020527 163 QEPQL-LQMDIKSNIMYGCPKDVKNEDIEWA-------AKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 234 (325)
Q Consensus 163 Q~~~l-~~~tv~enl~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~ 234 (325)
|++.+ +..++.||..++.+ ..+... .....+...+...... .......+||+||+||+..+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p-----~~~~~~~~~~~~~~~~~~l~~~l~~vd~~-~~~~~~~~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADP-----GPIIQTFFSHEVLCQRYLLDGVIALVDAV-HADEQMNQFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCH-----HHHHHHHHHSHHHHHHEEEEEEEEEEETT-THHHHHHHCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCH-----HHHHHHHhcCccccCeEEECCEEEEEEHH-HHHHHHhhchHHHHHHHhCCEEEEE
Confidence 87765 47889998876521 111111 1111110000000000 0000001489999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCch
Q 020527 235 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS 281 (325)
Q Consensus 235 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~ 281 (325)
+|+++ ||| ..+.+.++++. .+.+|+++||+..
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~----~~~~ii~~sh~~~ 190 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARIN----ARAPVYTVTHGDI 190 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHC----SSSCEEECCSSCC
T ss_pred CcccC--CHH---------HHHHHHHHHhC----CCCeEEEecccCC
Confidence 99987 998 56778887773 3789999999643
No 125
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.67 E-value=5.1e-17 Score=144.33 Aligned_cols=147 Identities=18% Similarity=0.276 Sum_probs=88.6
Q ss_pred EeeCCcEEEEEcCCCChHHHHHHHHHc--CCCC-----CCCeEEECCEeCCCC-CHHHHhcceEEEccCCcCccccHHHH
Q 020527 104 TIEANEVVAIVGLSGSGKSTFVNLLLR--LYEP-----SDGQIYIDGFPLTDL-DIRWLREKIGFVGQEPQLLQMDIKSN 175 (325)
Q Consensus 104 ~i~~Ge~~~iiG~nGsGKSTLl~~l~g--l~~~-----~~G~I~i~g~~i~~~-~~~~~r~~i~~v~Q~~~l~~~tv~en 175 (325)
-|++|++++|+||||||||||++.+++ +.+| ..|.+++++.+.... ....+.+++++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 489999999999999999999999999 5665 577888887652110 112233345554432 3444
Q ss_pred HhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHH-HHHHHHHHc--CCCCEEEEeCCCCCCCHH-
Q 020527 176 IMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ-RIAIARAIL--RDPAILLLDEATSALDSE- 251 (325)
Q Consensus 176 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~Q-Rv~iAral~--~~p~llllDEPts~LD~~- 251 (325)
+.+... .+..+.. .+.-++.++ .+|+++++|||++.+|+.
T Consensus 93 ~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~ 136 (243)
T 1n0w_A 93 VAYARA------------------------------------FNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDY 136 (243)
T ss_dssp EEEEEC------------------------------------CSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC---
T ss_pred eEEEec------------------------------------CCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHh
Confidence 433211 1222211 111111222 689999999999999985
Q ss_pred ------H-----HHHHHHHHHHhhccCCCCeEEEEEecCchHH-------------------H-hcCEEEEEeCC
Q 020527 252 ------S-----EHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-------------------K-AVDRIVVIDDG 295 (325)
Q Consensus 252 ------~-----~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~-------------------~-~~d~v~~l~~G 295 (325)
. ...+...|.++.++ .|+|||+++|..... . .||.+++|+.|
T Consensus 137 ~~~~~~~~r~~~~~~~~~~l~~~~~~--~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 137 SGRGELSARQMHLARFLRMLLRLADE--FGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHH--HCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHH--cCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 3 23444555555443 488999999965432 2 48999999865
No 126
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.67 E-value=1.9e-20 Score=176.41 Aligned_cols=179 Identities=12% Similarity=0.117 Sum_probs=118.0
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCC----HHHH
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRWL 154 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~----~~~~ 154 (325)
.++++|+++.|+. ..+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++.... ....
T Consensus 29 ~ie~~~~~~~~~~---~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~ 105 (337)
T 2qm8_A 29 LAESRRADHRAAV---RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGD 105 (337)
T ss_dssp HHTCSSHHHHHHH---HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCC
T ss_pred HHeeCCcccccCh---HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHH
Confidence 4677788888853 25999999999999999999999999999999999999999999999998874321 1224
Q ss_pred hcceEEEccCCcCccc-------------cHHHHHh-c---CCC--------CCCCHHHHHH---------------HHH
Q 020527 155 REKIGFVGQEPQLLQM-------------DIKSNIM-Y---GCP--------KDVKNEDIEW---------------AAK 194 (325)
Q Consensus 155 r~~i~~v~Q~~~l~~~-------------tv~enl~-~---~~~--------~~~~~~~~~~---------------~~~ 194 (325)
++++++++|++.+|.. ++.|.+. + +.. .......+.+ ..+
T Consensus 106 ~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~ 185 (337)
T 2qm8_A 106 KTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQ 185 (337)
T ss_dssp GGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC-----
T ss_pred hhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHH
Confidence 6779999999987731 1222220 0 000 0000000000 000
Q ss_pred H--cCHHHHHHhCCCCcccc-cCCCCCChHHHHHHHHHHHHcC------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc
Q 020527 195 Q--AYVHEFILSLPCGYETL-VDDDLLSGGQKQRIAIARAILR------DPAILLLDEATSALDSESEHYVKGVLHALRN 265 (325)
Q Consensus 195 ~--~~~~~~~~~~~~~~~~~-~~~~~LSgGq~QRv~iAral~~------~p~llllDEPts~LD~~~~~~i~~~l~~l~~ 265 (325)
. ..+.+....+.. .... .....+|+|++|++..|++++. +|+++. ||++|......+.+.+.++.+
T Consensus 186 ~i~~~i~~~~~ivvl-NK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 186 GIKKGIFELADMIAV-NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp -CCTTHHHHCSEEEE-ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHhccccEEEE-EchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 0 011111000000 0001 0113478999999999999987 688876 999999999999999988653
No 127
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.66 E-value=3.4e-18 Score=167.02 Aligned_cols=156 Identities=15% Similarity=0.167 Sum_probs=104.0
Q ss_pred eeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCC----HHH--HhcceEEEccCCcCc-cc
Q 020527 98 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRW--LREKIGFVGQEPQLL-QM 170 (325)
Q Consensus 98 L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~----~~~--~r~~i~~v~Q~~~l~-~~ 170 (325)
-+++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.+..... ... .|++|+|++|++.++ ..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 46899999999999999999999999999999999999999999887764321 112 367899999998766 57
Q ss_pred cHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc-CCC-CEEEEeCCCCCC
Q 020527 171 DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL-RDP-AILLLDEATSAL 248 (325)
Q Consensus 171 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~-~~p-~llllDEPts~L 248 (325)
++++|+.++.....+ .. +++.. |.... ...|-.--+|++.++|++. ..| +++|..+|+++.
T Consensus 363 tV~e~l~~a~~~~~D---------vV----LIDTa--Grl~~--~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq 425 (503)
T 2yhs_A 363 VIFDAIQAAKARNID---------VL----IADTA--GRLQN--KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ 425 (503)
T ss_dssp HHHHHHHHHHHTTCS---------EE----EECCC--CSCCC--HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTH
T ss_pred HHHHHHHHHHhcCCC---------EE----EEeCC--Cccch--hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccH
Confidence 999999764211100 00 00100 00000 0011122358889999775 446 466666688886
Q ss_pred CHHHHHHHHHHHHHhhccCCCCeEEEEEec
Q 020527 249 DSESEHYVKGVLHALRNDCKTKRTVIVIAH 278 (325)
Q Consensus 249 D~~~~~~i~~~l~~l~~~~~~g~tvi~vtH 278 (325)
|.. +.++.+.+. .+.|.+++||
T Consensus 426 ~al------~~ak~f~~~--~~itgvIlTK 447 (503)
T 2yhs_A 426 NAV------SQAKLFHEA--VGLTGITLTK 447 (503)
T ss_dssp HHH------HHHHHHHHH--TCCSEEEEEC
T ss_pred HHH------HHHHHHHhh--cCCCEEEEEc
Confidence 654 233344332 3779999999
No 128
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.65 E-value=6e-19 Score=158.42 Aligned_cols=139 Identities=17% Similarity=0.133 Sum_probs=95.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHH---cCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHHHHHhcCC--
Q 020527 107 ANEVVAIVGLSGSGKSTFVNLLL---RLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGC-- 180 (325)
Q Consensus 107 ~Ge~~~iiG~nGsGKSTLl~~l~---gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~enl~~~~-- 180 (325)
++++++|+||||||||||+++|+ |+..|++|+|.++|.+.. ......+++++|+..++ ..++.+++....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 999999999988876532 12334466677877665 468888885310
Q ss_pred ---------CCCCCHHHHHHHHH--HcC------------HHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH-cCCC
Q 020527 181 ---------PKDVKNEDIEWAAK--QAY------------VHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI-LRDP 236 (325)
Q Consensus 181 ---------~~~~~~~~~~~~~~--~~~------------~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral-~~~p 236 (325)
.............. ..+ +.....+. ...||| |+ ||+ +.+|
T Consensus 102 ~~~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~---------~~~lSg----rv---~al~~~~P 165 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRW---------IHPPSG----RV---YNLDFNPP 165 (246)
T ss_dssp CTTSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE---------EETTTT----EE---EETTTSCC
T ss_pred cCCCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCC---------CcCCCC----Cc---cccccCCC
Confidence 00011111111110 011 11111111 246899 66 788 9999
Q ss_pred CEEEEe----CCCCCCCHHHHHHHHHHHHHhhc
Q 020527 237 AILLLD----EATSALDSESEHYVKGVLHALRN 265 (325)
Q Consensus 237 ~llllD----EPts~LD~~~~~~i~~~l~~l~~ 265 (325)
+++++| |||++||+.+...+.+.+.++.+
T Consensus 166 ~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 166 HVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp SSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred cccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence 999999 99999999999999999988864
No 129
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.65 E-value=7.3e-20 Score=157.55 Aligned_cols=171 Identities=16% Similarity=0.047 Sum_probs=107.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHHHHHhcCCCCCCCH
Q 020527 108 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKN 186 (325)
Q Consensus 108 Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~enl~~~~~~~~~~ 186 (325)
|++++|+||||||||||+++|++ |.+|.++++|.++... ..+++++|....+ ..++++|+.+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~------ 66 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDLT------ 66 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHHH------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHHH------
Confidence 68999999999999999999997 6789999988654321 2467777766433 468888875420
Q ss_pred HHHHHHHHHcCHHHHHHhCCCCcccccCCCCC--ChHHHHHHHHHH------HHcCCCCEEEEeCCCCCCCHHHHHHHHH
Q 020527 187 EDIEWAAKQAYVHEFILSLPCGYETLVDDDLL--SGGQKQRIAIAR------AILRDPAILLLDEATSALDSESEHYVKG 258 (325)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L--SgGq~QRv~iAr------al~~~p~llllDEPts~LD~~~~~~i~~ 258 (325)
...... +...+++.. ...........+ |+|++|++.++. +++.+|+...+|+ ++|+..... .+
T Consensus 67 ---~~~~~~-~~~~ild~~-~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~ 137 (189)
T 2bdt_A 67 ---VNFLLA-QNDVVLDYI-AFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VE 137 (189)
T ss_dssp ---HHHHHT-TCEEEEESC-CCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HH
T ss_pred ---HHHHhc-CCcEEEeec-cCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HH
Confidence 000000 000000000 000000000124 888888888888 8888888887884 899988777 77
Q ss_pred HHHHhhccCCCCeEEEEEecC-chHHHh-cCEEEEEeCCEEEEEcChHHHh
Q 020527 259 VLHALRNDCKTKRTVIVIAHR-LSTIKA-VDRIVVIDDGRIIEVGNHAELL 307 (325)
Q Consensus 259 ~l~~l~~~~~~g~tvi~vtH~-~~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 307 (325)
.+..+.+ .+.++|.+||. ++.++. ||+|+ ++|+++..|+++-+-
T Consensus 138 ~~~~~~~---~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 138 EFESKGI---DERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp HHHHTTC---CTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred HHhhcCC---CccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence 7777743 36799999998 998865 99998 999999999887653
No 130
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.64 E-value=5e-18 Score=142.91 Aligned_cols=89 Identities=13% Similarity=0.066 Sum_probs=72.8
Q ss_pred EEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 020527 81 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 160 (325)
Q Consensus 81 ~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~ 160 (325)
+.+|+++.|++ ..+++++||+|++|++++|+||||||||||+|+|+|++ |++|+|.++|.++... ...+ + +
T Consensus 9 ~~~~~~~~~g~---~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~-~--~ 79 (158)
T 1htw_A 9 PDEFSMLRFGK---KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA-G--K 79 (158)
T ss_dssp CSHHHHHHHHH---HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET-T--E
T ss_pred CCHHHHHHHHH---HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC-C--c
Confidence 34456777754 35899999999999999999999999999999999999 9999999999876421 1111 2 7
Q ss_pred EccCCcCccccHHHHHhc
Q 020527 161 VGQEPQLLQMDIKSNIMY 178 (325)
Q Consensus 161 v~Q~~~l~~~tv~enl~~ 178 (325)
++|++.+|..|+.||+.+
T Consensus 80 ~~q~~~l~~ltv~e~l~~ 97 (158)
T 1htw_A 80 MIYHFDLYRLADPEELEF 97 (158)
T ss_dssp EEEEEECTTCSCTTHHHH
T ss_pred ceeccccccCCcHHHHHH
Confidence 999988888899999853
No 131
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.61 E-value=2.9e-17 Score=153.89 Aligned_cols=166 Identities=14% Similarity=0.042 Sum_probs=110.5
Q ss_pred EeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHH----HHhc--ceEEEccCCcCc-cccHHHHH
Q 020527 104 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR----WLRE--KIGFVGQEPQLL-QMDIKSNI 176 (325)
Q Consensus 104 ~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~----~~r~--~i~~v~Q~~~l~-~~tv~enl 176 (325)
..++|++++|+||||||||||++.|+|+++|++|+|.+.|.++...... .+++ .+.+++|.+.++ ..++++|+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 3478999999999999999999999999999999999999998665432 2233 466999998887 57999999
Q ss_pred hcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHH
Q 020527 177 MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 256 (325)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i 256 (325)
.++.. ..... -+++..+ .. ..-..=..+.-.++|++..+++++++|.++. . .+
T Consensus 205 ~~~~~------------~~~d~-vliDtaG--~~-----~~~~~l~~eL~~i~ral~~de~llvLDa~t~-~------~~ 257 (328)
T 3e70_C 205 QHAKA------------RGIDV-VLIDTAG--RS-----ETNRNLMDEMKKIARVTKPNLVIFVGDALAG-N------AI 257 (328)
T ss_dssp HHHHH------------HTCSE-EEEEECC--SC-----CTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-T------HH
T ss_pred HHHHh------------ccchh-hHHhhcc--ch-----hHHHHHHHHHHHHHHHhcCCCCEEEEecHHH-H------HH
Confidence 76410 00000 0011111 00 0011122344459999999999999996654 3 33
Q ss_pred HHHHHHhhccCCCCeEEEEEecCchH---------HHh-cCEEEEEeCCEEE
Q 020527 257 KGVLHALRNDCKTKRTVIVIAHRLST---------IKA-VDRIVVIDDGRII 298 (325)
Q Consensus 257 ~~~l~~l~~~~~~g~tvi~vtH~~~~---------~~~-~d~v~~l~~G~i~ 298 (325)
.+.++.+.+. .+.|+|++||.-+. +.. .-.|.++..|+-+
T Consensus 258 ~~~~~~~~~~--~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 258 VEQARQFNEA--VKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp HHHHHHHHHH--SCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred HHHHHHHHHh--cCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 4455555432 37899999994321 222 4578888888754
No 132
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.60 E-value=5.6e-16 Score=148.81 Aligned_cols=148 Identities=14% Similarity=0.205 Sum_probs=95.0
Q ss_pred EeeCCcEEEEEcCCCChHHHHHHH--HHcCCCCCCC-----eEEECCEeCCC-CCHHHHhcceEEEccCCcCccccHHHH
Q 020527 104 TIEANEVVAIVGLSGSGKSTFVNL--LLRLYEPSDG-----QIYIDGFPLTD-LDIRWLREKIGFVGQEPQLLQMDIKSN 175 (325)
Q Consensus 104 ~i~~Ge~~~iiG~nGsGKSTLl~~--l~gl~~~~~G-----~I~i~g~~i~~-~~~~~~r~~i~~v~Q~~~l~~~tv~en 175 (325)
-|++|++++|+||||||||||++. +.++.+++.| .++|++.+... .....+++++++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 589999999999999999999994 4577776544 88888865311 111223445555444 56677
Q ss_pred HhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH--cCCCCEEEEeCCCCCCCHHHH
Q 020527 176 IMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI--LRDPAILLLDEATSALDSESE 253 (325)
Q Consensus 176 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral--~~~p~llllDEPts~LD~~~~ 253 (325)
+.+... ...+. +.+.+.-++.+ ..+|+++++|||++.+|+...
T Consensus 247 i~~~~~--~~~~~---------------------------------~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~s 291 (400)
T 3lda_A 247 VAYARA--YNADH---------------------------------QLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFS 291 (400)
T ss_dssp EEEEEC--CSHHH---------------------------------HHHHHHHHHHHHHHSCEEEEEEETGGGGCC----
T ss_pred EEEecc--CChHH---------------------------------HHHHHHHHHHHHHhcCCceEEecchhhhCchhhc
Confidence 665421 11111 11111111121 257999999999999997543
Q ss_pred ------------HHHHHHHHHhhccCCCCeEEEEEecCc-------------------hHHHh-cCEEEEEeCC
Q 020527 254 ------------HYVKGVLHALRNDCKTKRTVIVIAHRL-------------------STIKA-VDRIVVIDDG 295 (325)
Q Consensus 254 ------------~~i~~~l~~l~~~~~~g~tvi~vtH~~-------------------~~~~~-~d~v~~l~~G 295 (325)
.++++.|++++++ .|.|||+++|.. ..+.. +|.+++|+++
T Consensus 292 g~g~l~~Rq~~l~~il~~L~~lake--~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 292 GRGELSARQMHLAKFMRALQRLADQ--FGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHH--HCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred CccchHHHHHHHHHHHHHHHHHHHH--cCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 5577778877654 489999999982 22344 8999999876
No 133
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.60 E-value=5.2e-18 Score=156.49 Aligned_cols=131 Identities=13% Similarity=0.099 Sum_probs=87.0
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCC--
Q 020527 106 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD-- 183 (325)
Q Consensus 106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~-- 183 (325)
+++.+++|+|++|||||||.+.|.+++++. | . . ++.+.+|+|+.++++.++++|+.++.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccch
Confidence 457899999999999999999999999763 2 0 1 34566669999988889999987642100
Q ss_pred CCHHHHHHHHHHcCHHHHHHhCCCCcccc------cC--CCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHH
Q 020527 184 VKNEDIEWAAKQAYVHEFILSLPCGYETL------VD--DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 252 (325)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~ 252 (325)
........+.+...+.+++..++.++++. .+ ...+||||+||+++|++...+|+|+|+||||+++|+..
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCCC
T ss_pred hhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCccc
Confidence 00000000111223345566666564321 22 35799999999999843333999999999999999853
No 134
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.57 E-value=9.5e-17 Score=151.68 Aligned_cols=122 Identities=17% Similarity=0.120 Sum_probs=77.0
Q ss_pred CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCC-CCCCeEEEC-CEeCCCCCHHHHhcceEEEccCCcCc-cccH
Q 020527 96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-PSDGQIYID-GFPLTDLDIRWLREKIGFVGQEPQLL-QMDI 172 (325)
Q Consensus 96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~-~~~G~I~i~-g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv 172 (325)
.-++++++. .+|++++|+||||||||||+++|+|+.+ |.+|+|.++ |.... ...++.++++||++.++ ..++
T Consensus 204 ~gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv 278 (358)
T 2rcn_A 204 DGLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGV 278 (358)
T ss_dssp BTHHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHH
T ss_pred cCHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccH
Confidence 357788875 4799999999999999999999999999 999999987 75532 12356799999998887 4688
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 020527 173 KSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 232 (325)
Q Consensus 173 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 232 (325)
+++... ....+.+.. .+.++++.+...........+|| ||+||++||+++
T Consensus 279 ~e~~l~----~l~~~e~~~-----~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 279 REFGLW----HLEPEQITQ-----GFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp HTCCCC----CCCHHHHHH-----TSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred HHhhhc----CCCHHHHHH-----HHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 885322 222322211 22233333322111122235799 999999999875
No 135
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.57 E-value=6.7e-15 Score=140.05 Aligned_cols=74 Identities=27% Similarity=0.447 Sum_probs=65.6
Q ss_pred CCCChHHHHHH------HHHHHHcCC-CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHhcCE
Q 020527 216 DLLSGGQKQRI------AIARAILRD-PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDR 288 (325)
Q Consensus 216 ~~LSgGq~QRv------~iAral~~~-p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~~d~ 288 (325)
..|||||+||+ ++||+++.+ |++|||||||++||+..+..+.+.|.++.+ +.+||++||+++....||+
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~----~~~vi~~th~~~~~~~~d~ 354 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS----IPQMIIITHHRELEDVADV 354 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS----CSEEEEEESCGGGGGGCSE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc----CCeEEEEEChHHHHhhCCE
Confidence 46999999988 567999999 999999999999999999999999988732 4589999999986566999
Q ss_pred EEEEe
Q 020527 289 IVVID 293 (325)
Q Consensus 289 v~~l~ 293 (325)
+++|+
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
No 136
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.55 E-value=6.1e-16 Score=131.94 Aligned_cols=112 Identities=17% Similarity=0.167 Sum_probs=75.2
Q ss_pred eEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCC
Q 020527 102 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP 181 (325)
Q Consensus 102 sl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~ 181 (325)
+|++++|+.++|+||||||||||++++++.+.|.+|.. +.| .+..+.+.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~------------------~~~---------~~~~~~~~---- 80 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR------------------GYF---------FDTKDLIF---- 80 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC------------------CCE---------EEHHHHHH----
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe------------------EEE---------EEHHHHHH----
Confidence 45678899999999999999999999999987766621 001 11222110
Q ss_pred CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCC-CCCHHHHHHHHHHH
Q 020527 182 KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATS-ALDSESEHYVKGVL 260 (325)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts-~LD~~~~~~i~~~l 260 (325)
.+... .... ... -+...+.+|++|++|||++ ++|+..+..+.+++
T Consensus 81 ------~~~~~---------~~~~-----------~~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll 126 (180)
T 3ec2_A 81 ------RLKHL---------MDEG-----------KDT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYII 126 (180)
T ss_dssp ------HHHHH---------HHHT-----------CCS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHH
T ss_pred ------HHHHH---------hcCc-----------hHH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHH
Confidence 00000 0000 011 0112234999999999995 99999999999999
Q ss_pred HHhhccCCCCeEEEEEecCch
Q 020527 261 HALRNDCKTKRTVIVIAHRLS 281 (325)
Q Consensus 261 ~~l~~~~~~g~tvi~vtH~~~ 281 (325)
....+ .|+++|++||...
T Consensus 127 ~~~~~---~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 127 TYRYN---NLKSTIITTNYSL 144 (180)
T ss_dssp HHHHH---TTCEEEEECCCCS
T ss_pred HHHHH---cCCCEEEEcCCCh
Confidence 88754 3789999999763
No 137
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.55 E-value=6e-15 Score=138.48 Aligned_cols=138 Identities=18% Similarity=0.221 Sum_probs=77.3
Q ss_pred EEEEEcCCCChHHHHHHHHHc-CCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHHHHHhcCCCCCCCHH
Q 020527 110 VVAIVGLSGSGKSTFVNLLLR-LYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNE 187 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~g-l~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~enl~~~~~~~~~~~ 187 (325)
.+.|.||||+|||||++++++ ++.|+.|.+.++|.++... ...+..+++++|.+.+. ..+- .+ .....
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-----~~---~~~~~ 107 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTA--SNRKLELNVVSSPYHLEITPSD-----MG---NNDRI 107 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC------------CCHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccc--ccccceeeeecccceEEecHhh-----cC---CcchH
Confidence 389999999999999999999 8999999999999876432 22256789999987542 2110 01 01111
Q ss_pred HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccC
Q 020527 188 DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 267 (325)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~ 267 (325)
.+.+..+ ++....+. ... ..||| +..+|+++|+|||++ ||+.+...+++.+.+..
T Consensus 108 ~~~~~i~-----~~~~~~~~--~~~---~~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~--- 162 (354)
T 1sxj_E 108 VIQELLK-----EVAQMEQV--DFQ---DSKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS--- 162 (354)
T ss_dssp HHHHHHH-----HHTTTTC----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST---
T ss_pred HHHHHHH-----HHHHhccc--ccc---ccccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc---
Confidence 1222111 11111110 000 03566 778999999999999 99999999999998863
Q ss_pred CCCeEEEEEecCchHH
Q 020527 268 KTKRTVIVIAHRLSTI 283 (325)
Q Consensus 268 ~~g~tvi~vtH~~~~~ 283 (325)
.+.++|++||+++.+
T Consensus 163 -~~~~~Il~t~~~~~l 177 (354)
T 1sxj_E 163 -KNIRLIMVCDSMSPI 177 (354)
T ss_dssp -TTEEEEEEESCSCSS
T ss_pred -CCCEEEEEeCCHHHH
Confidence 368999999998643
No 138
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.54 E-value=6e-16 Score=143.43 Aligned_cols=115 Identities=17% Similarity=0.133 Sum_probs=78.4
Q ss_pred EeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEE---CCEeCCCCCHHHHh-cceEEEccCCcC------ccccHH
Q 020527 104 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI---DGFPLTDLDIRWLR-EKIGFVGQEPQL------LQMDIK 173 (325)
Q Consensus 104 ~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i---~g~~i~~~~~~~~r-~~i~~v~Q~~~l------~~~tv~ 173 (325)
++.+|++++|+||||||||||+|+|+ +.+|++|+|.+ +|+++..... ..+ +.+||++|+|.+ ...|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 45679999999999999999999999 99999999999 9988765322 222 369999999854 24688
Q ss_pred HHH--hcC--------C----CCCCCHHHHHHHHHHcCHHH-HHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 020527 174 SNI--MYG--------C----PKDVKNEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQKQRIAIAR 230 (325)
Q Consensus 174 enl--~~~--------~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 230 (325)
||+ .|+ . ........+.++++..++.+ ..++.+ ..|||.+++++.|||
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~---------~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL---------KIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH---------HHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH---------HHHHHHHHHHHHHhc
Confidence 887 443 0 11112344666777777654 444443 458998899999987
No 139
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.53 E-value=7.7e-15 Score=122.08 Aligned_cols=92 Identities=18% Similarity=0.320 Sum_probs=69.7
Q ss_pred ceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCC--eEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHH
Q 020527 97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG--QIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 174 (325)
Q Consensus 97 iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G--~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~e 174 (325)
+|+++ +|+.++|+||||||||||++++++.+.+ +| .+++++.++...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~------------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT------------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-------------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-------------------------
Confidence 55555 8999999999999999999999999886 46 444443221100
Q ss_pred HHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHH
Q 020527 175 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 254 (325)
Q Consensus 175 nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~ 254 (325)
+++.+|++|++|||++ +|...++
T Consensus 79 --------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~ 101 (149)
T 2kjq_A 79 --------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQA 101 (149)
T ss_dssp --------------------------------------------------------GGGGGCSEEEEESTTC-CCSHHHH
T ss_pred --------------------------------------------------------HHHhCCCEEEEeCccc-cChHHHH
Confidence 2356899999999998 6666688
Q ss_pred HHHHHHHHhhccCCCCeE-EEEEecC
Q 020527 255 YVKGVLHALRNDCKTKRT-VIVIAHR 279 (325)
Q Consensus 255 ~i~~~l~~l~~~~~~g~t-vi~vtH~ 279 (325)
.+++++..+.++ |++ +|++||.
T Consensus 102 ~l~~li~~~~~~---g~~~iiits~~ 124 (149)
T 2kjq_A 102 LLFSIFNRFRNS---GKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHHHH---TCCEEEEEESS
T ss_pred HHHHHHHHHHHc---CCcEEEEECCC
Confidence 899999887653 667 8888884
No 140
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.51 E-value=2.7e-17 Score=162.65 Aligned_cols=174 Identities=15% Similarity=0.173 Sum_probs=110.2
Q ss_pred CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHHH
Q 020527 96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKS 174 (325)
Q Consensus 96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~e 174 (325)
.+++++++.+++|+.++|+||||||||||+++|+|+++|++|.|.++|.+--..+ -...+++..|..... ..|..+
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~---~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLY---HENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCC---CSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCC---CCCeEEEEeecccccCCcCHHH
Confidence 4788999999999999999999999999999999999999999999886522221 134567777654422 246666
Q ss_pred HHhcCCC--------CCCCHHHHHHHHHHc-------------CHHHHHHhCC---CCcccc----cC-----CCCCChH
Q 020527 175 NIMYGCP--------KDVKNEDIEWAAKQA-------------YVHEFILSLP---CGYETL----VD-----DDLLSGG 221 (325)
Q Consensus 175 nl~~~~~--------~~~~~~~~~~~~~~~-------------~~~~~~~~~~---~~~~~~----~~-----~~~LSgG 221 (325)
++..... ......+...+.... ...+.+.++. .+.... +. ...+|+|
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G 404 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGN 404 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSS
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCC
Confidence 6532210 011111222222211 1233333321 111110 01 1247999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEE--EecCchHHHh-cC
Q 020527 222 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIV--IAHRLSTIKA-VD 287 (325)
Q Consensus 222 q~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~--vtH~~~~~~~-~d 287 (325)
|+||.++|. + | |+|||+.....+.+.+.++.+ .+.|+++ +||+++.+.. |+
T Consensus 405 ~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~---~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 405 TRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDP---KEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp CEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEET---TTTEEEECSCCTHHHHHHHHHT
T ss_pred CceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcc---cCCEEEEcccHHHHHHHHHHcC
Confidence 999987751 1 7 999999877666666666643 4778875 8999998864 64
No 141
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.50 E-value=7.9e-17 Score=155.57 Aligned_cols=129 Identities=16% Similarity=0.178 Sum_probs=87.3
Q ss_pred ceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCC-C---HHHHhcceEEEc---------c
Q 020527 97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL-D---IRWLREKIGFVG---------Q 163 (325)
Q Consensus 97 iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~-~---~~~~r~~i~~v~---------Q 163 (325)
+|+++ + .++|++++|+||||||||||+++|+|+++|++|+|.+.+.++... + ...+++++++.| |
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq 235 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQ 235 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGG
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhcc
Confidence 45555 3 378999999999999999999999999999999999998876421 1 112344566655 9
Q ss_pred CCcCc---c----ccHHHHHhcCCC--------CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 020527 164 EPQLL---Q----MDIKSNIMYGCP--------KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 228 (325)
Q Consensus 164 ~~~l~---~----~tv~enl~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 228 (325)
+|.++ . .|+.+++.++.. ...........+...++.... ....|||||+|| |
T Consensus 236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~-----------~~~~LSgg~~QR--L 302 (418)
T 1p9r_A 236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL-----------ISSSLLGVLAQR--L 302 (418)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH-----------HHHHEEEEEEEE--E
T ss_pred CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH-----------HHHHHHHHHHHH--h
Confidence 88653 2 488998865310 011112222233333333221 114599999999 9
Q ss_pred HHHHcCCCCEEE
Q 020527 229 ARAILRDPAILL 240 (325)
Q Consensus 229 Aral~~~p~lll 240 (325)
||+|+.+|++..
T Consensus 303 araL~~~p~~~~ 314 (418)
T 1p9r_A 303 VRTLCPDCKEPY 314 (418)
T ss_dssp EEEECTTTCEEE
T ss_pred hhhhcCCCCccC
Confidence 999999999875
No 142
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.50 E-value=1.2e-17 Score=152.72 Aligned_cols=129 Identities=17% Similarity=0.172 Sum_probs=93.1
Q ss_pred CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCC-cCc-cccHH
Q 020527 96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEP-QLL-QMDIK 173 (325)
Q Consensus 96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~-~l~-~~tv~ 173 (325)
.+++++++++++| ++|+||||||||||+++|+|...+ |.|.++|.++........++.++++||.+ ..+ ..++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 4889999999999 999999999999999999999876 79999998876544445566799999986 333 46778
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCC
Q 020527 174 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATS 246 (325)
Q Consensus 174 enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts 246 (325)
|++....... ..... .. ......++. .+|||||+||+.+++|+.++|++| |||+.
T Consensus 110 Deid~~~~~r-~~~~~-~~-----~~~~~~~~l---------~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 110 DEVDALCPRR-SDRET-GA-----SVRVVNQLL---------TEMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp ETCTTTCC----------------CTTHHHHHH---------HHHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred ehhhhhhccc-CCCcc-hH-----HHHHHHHHH---------HhhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 8876532211 11000 00 011111111 248999999999999999999985 99975
No 143
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.49 E-value=6.9e-17 Score=141.40 Aligned_cols=141 Identities=18% Similarity=0.146 Sum_probs=83.3
Q ss_pred eeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhc----CC
Q 020527 105 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMY----GC 180 (325)
Q Consensus 105 i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~----~~ 180 (325)
.++|++++|+||||||||||+++|+|+++|+ | ..+++++++...+..+..+|+.. +.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 4789999999999999999999999999875 4 23566666665554444444321 10
Q ss_pred CCCCCHHHHHHHHHHcCHHHHHHhCCCCccccc--CCCCCChHHHHHHHHH-HHHcCCCCEEEEeCCCCCCCHHHHHHHH
Q 020527 181 PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLV--DDDLLSGGQKQRIAIA-RAILRDPAILLLDEATSALDSESEHYVK 257 (325)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~LSgGq~QRv~iA-ral~~~p~llllDEPts~LD~~~~~~i~ 257 (325)
+...........+. .+... ....... ....+|+||+||+++| ++++.++.++++|||.-
T Consensus 80 ~~~~~~~~~~~~l~-----~l~~~--~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~----------- 141 (208)
T 3c8u_A 80 PETFDFEGFQRLCH-----ALKHQ--ERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW----------- 141 (208)
T ss_dssp GGGBCHHHHHHHHH-----HHHHC--SCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------
T ss_pred CchhhHHHHHHHHH-----HHhcC--CceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchh-----------
Confidence 00011111111111 11111 0111111 1235899999999998 88888888888888731
Q ss_pred HHHHHhhccCCCCeEEEEEecCchH-HHh-cCE
Q 020527 258 GVLHALRNDCKTKRTVIVIAHRLST-IKA-VDR 288 (325)
Q Consensus 258 ~~l~~l~~~~~~g~tvi~vtH~~~~-~~~-~d~ 288 (325)
.++.+. . -.+++++++.+. +.+ +.|
T Consensus 142 ---~~l~~~--~-d~~i~vd~~~~~~~~R~~~R 168 (208)
T 3c8u_A 142 ---RDLTAI--W-DVSIRLEVPMADLEARLVQR 168 (208)
T ss_dssp ---GGGGGT--C-SEEEEECCCHHHHHHHHHHH
T ss_pred ---HHHHHh--c-CEEEEEeCCHHHHHHHHHHH
Confidence 111111 1 267888888876 333 555
No 144
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.44 E-value=5.6e-15 Score=136.76 Aligned_cols=103 Identities=15% Similarity=0.122 Sum_probs=67.4
Q ss_pred EEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEE---CCEeCCCCCHHHHhcceEEEccCCc-------------
Q 020527 103 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI---DGFPLTDLDIRWLREKIGFVGQEPQ------------- 166 (325)
Q Consensus 103 l~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i---~g~~i~~~~~~~~r~~i~~v~Q~~~------------- 166 (325)
|++.+|++++|+||||||||||+|+|+|+.+|++|+|.+ +|+++.........+.+||++|.|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456789999999999999999999999999999999999 8988765432111246899999984
Q ss_pred ---Cc-cccHHHHHhcCCCC--CCCHHHHHHHHHHcCH-HHHHHhCC
Q 020527 167 ---LL-QMDIKSNIMYGCPK--DVKNEDIEWAAKQAYV-HEFILSLP 206 (325)
Q Consensus 167 ---l~-~~tv~enl~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~ 206 (325)
+| ..|+ +|+.|+... ......+.++++..++ .+..++.|
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~ 289 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYV 289 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHH
Confidence 34 4688 898875321 2223456778888887 45555554
No 145
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.44 E-value=5e-15 Score=142.84 Aligned_cols=156 Identities=19% Similarity=0.173 Sum_probs=93.5
Q ss_pred eeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHh
Q 020527 98 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIM 177 (325)
Q Consensus 98 L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~ 177 (325)
-++++|+++.|+.++|+|+||||||||+++|+|..+ .+.+.+...+ ...+++++++.. ...++.|+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl-----~p~~G~V~~~~~-~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTL-----SPNLGVVEVSEE-ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSS-----CCEEEEEECSSS-CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCccccee-----cceeeEEEecCc-ceEEEEeccc
Confidence 479999999999999999999999999999999854 3445444332 345778877641 1122333221
Q ss_pred cCC----CCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHH
Q 020527 178 YGC----PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 253 (325)
Q Consensus 178 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~ 253 (325)
+.. ......... ...+. .+.++..+... .....+||+|++|++++|++|+.+|.++++ +.+|+...
T Consensus 215 li~~a~~~~~L~~~fl-~~~er--a~~lL~vvDls---~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~ 284 (416)
T 1udx_A 215 IIEGASEGKGLGLEFL-RHIAR--TRVLLYVLDAA---DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE 284 (416)
T ss_dssp CCCCGGGSCCSCHHHH-HHHTS--SSEEEEEEETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH
T ss_pred cccchhhhhhhhHHHH-HHHHH--HHhhhEEeCCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH
Confidence 100 001111111 11110 00011111000 001135899999999999999999999999 99999876
Q ss_pred HHHHHHHHHhhccCCCCeEEEEEec
Q 020527 254 HYVKGVLHALRNDCKTKRTVIVIAH 278 (325)
Q Consensus 254 ~~i~~~l~~l~~~~~~g~tvi~vtH 278 (325)
...+.+.+..++ .+.+++++|.
T Consensus 285 -~~~~~l~~~l~~--~g~~vi~iSA 306 (416)
T 1udx_A 285 -EAVKALADALAR--EGLAVLPVSA 306 (416)
T ss_dssp -HHHHHHHHHHHT--TTSCEEECCT
T ss_pred -HHHHHHHHHHHh--cCCeEEEEEC
Confidence 334444443322 3667777663
No 146
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.34 E-value=8.1e-15 Score=136.09 Aligned_cols=137 Identities=18% Similarity=0.221 Sum_probs=96.1
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEe-------------------eCCcEEEEEcCCCChHHHHHHHHHcCCC--CCCC
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTI-------------------EANEVVAIVGLSGSGKSTFVNLLLRLYE--PSDG 137 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i-------------------~~Ge~~~iiG~nGsGKSTLl~~l~gl~~--~~~G 137 (325)
.|+++||++.|. ++++++|+.+ ++|+++||+||||||||||+++|+|+++ |++|
T Consensus 37 ~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G 111 (308)
T 1sq5_A 37 DLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHR 111 (308)
T ss_dssp TCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCC
T ss_pred ccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCC
Confidence 589999999993 4899999988 8999999999999999999999999998 9999
Q ss_pred eEEE---CCEeCCCCCHHHHhcceEEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcc-cc
Q 020527 138 QIYI---DGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYE-TL 212 (325)
Q Consensus 138 ~I~i---~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 212 (325)
+|.+ ||.... . ..++.++++ |...++ ..++.+|+.+... +. . +.. ..
T Consensus 112 ~i~vi~~d~~~~~---~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~-----------l~--~----------~~~~i~ 163 (308)
T 1sq5_A 112 RVELITTDGFLHP---N-QVLKERGLM-KKKGFPESYDMHRLVKFVSD-----------LK--S----------GVPNVT 163 (308)
T ss_dssp CEEEEEGGGGBCC---H-HHHHHHTCT-TCTTSGGGBCHHHHHHHHHH-----------HT--T----------TCSCEE
T ss_pred eEEEEecCCccCc---H-HHHHhCCEe-ecCCCCCCccHHHHHHHHHH-----------Hh--C----------CCCcee
Confidence 9999 887642 2 235568888 776665 5688888754200 00 0 000 00
Q ss_pred cCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCH
Q 020527 213 VDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 250 (325)
Q Consensus 213 ~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~ 250 (325)
......+.+ +|+..+.+.+.+|+++|+|.|....+.
T Consensus 164 ~P~~~~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 164 APVYSHLIY--DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp ECCEETTTT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred ccccccccc--CcccccceecCCCCEEEECchhhCCCc
Confidence 000011222 333333345678999999999988773
No 147
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.33 E-value=5e-13 Score=130.72 Aligned_cols=52 Identities=15% Similarity=0.119 Sum_probs=49.5
Q ss_pred CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCC
Q 020527 96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD 148 (325)
Q Consensus 96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~ 148 (325)
.+|+++||+|++ ++++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ 69 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAG 69 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCS
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEccc
Confidence 489999999999 9999999999999999999999999999999999988764
No 148
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.32 E-value=1.9e-16 Score=148.67 Aligned_cols=176 Identities=14% Similarity=0.175 Sum_probs=108.9
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCC-------cEEEEEcCCCChHHHHHHHHHcCC----CCCCCeEEECCEeCCC
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEAN-------EVVAIVGLSGSGKSTFVNLLLRLY----EPSDGQIYIDGFPLTD 148 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~G-------e~~~iiG~nGsGKSTLl~~l~gl~----~~~~G~I~i~g~~i~~ 148 (325)
++.++++..|++. .+++++++.+++| +.++|+||||+|||||+++|+|.+ .+.+|.+..++.++..
T Consensus 19 lr~~~l~~~~g~~---~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~ 95 (334)
T 1in4_A 19 LRPKSLDEFIGQE---NVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAA 95 (334)
T ss_dssp TSCSSGGGCCSCH---HHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHH
T ss_pred cCCccHHHccCcH---HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHH
Confidence 4555666667542 5899999999877 899999999999999999999998 6778877766554421
Q ss_pred CCHHHHhcceEEEccCCcCccccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHH
Q 020527 149 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK 223 (325)
Q Consensus 149 ~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~ 223 (325)
......+..|.+++|...++. ++.|++..... .... ... ..+ .+...+..+..-. .......||+|++
T Consensus 96 ~~~~~~~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~---~~~--~i~~~l~~~~li~-at~~~~~Ls~~l~ 168 (334)
T 1in4_A 96 ILTSLERGDVLFIDEIHRLNK-AVEELLYSAIEDFQIDIMIGKGP---SAK--SIRIDIQPFTLVG-ATTRSGLLSSPLR 168 (334)
T ss_dssp HHHHCCTTCEEEEETGGGCCH-HHHHHHHHHHHTSCCCC--------------------CCCEEEE-EESCGGGSCHHHH
T ss_pred HHHHccCCCEEEEcchhhcCH-HHHHHHHHHHHhcccceeeccCc---ccc--cccccCCCeEEEE-ecCCcccCCHHHH
Confidence 101111456999999877665 77777742100 0000 000 000 0111111111100 1111246999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCE
Q 020527 224 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDR 288 (325)
Q Consensus 224 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~ 288 (325)
||++++ .+||+.+...+.+++++..+. .+ ++|+.+.+.. |++
T Consensus 169 sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~--~~-----~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 169 SRFGII----------------LELDFYTVKELKEIIKRAASL--MD-----VEIEDAAAEMIAKR 211 (334)
T ss_dssp TTCSEE----------------EECCCCCHHHHHHHHHHHHHH--TT-----CCBCHHHHHHHHHT
T ss_pred HhcCce----------------eeCCCCCHHHHHHHHHHHHHH--cC-----CCcCHHHHHHHHHh
Confidence 998655 788998888999999887653 23 3677776543 443
No 149
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.31 E-value=2e-13 Score=118.10 Aligned_cols=72 Identities=17% Similarity=0.174 Sum_probs=55.7
Q ss_pred eEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHHHHHh
Q 020527 102 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIM 177 (325)
Q Consensus 102 sl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~enl~ 177 (325)
|+++++|++++|+||||||||||+++|+|+++ .+.+++..+........+..++|+||++..| ..++.+|+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 57788999999999999999999999999974 6888887776544333466799999999877 467777664
No 150
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.30 E-value=1.1e-13 Score=128.39 Aligned_cols=73 Identities=18% Similarity=0.227 Sum_probs=44.0
Q ss_pred EEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEE---CCEeCCCCCHHHHhcceEEEccCCcCc-----cccHHH
Q 020527 103 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI---DGFPLTDLDIRWLREKIGFVGQEPQLL-----QMDIKS 174 (325)
Q Consensus 103 l~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i---~g~~i~~~~~~~~r~~i~~v~Q~~~l~-----~~tv~e 174 (325)
+++.+|++++|+||||||||||+|+|+|+.+|.+|+|.+ +|+.+.... ...+..++|++|.|.+. ..|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 456789999999999999999999999999999999999 887765432 11222389999999664 3578 8
Q ss_pred HHh
Q 020527 175 NIM 177 (325)
Q Consensus 175 nl~ 177 (325)
|+.
T Consensus 246 ~l~ 248 (307)
T 1t9h_A 246 ELG 248 (307)
T ss_dssp HHG
T ss_pred HHH
Confidence 883
No 151
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.29 E-value=7e-13 Score=122.94 Aligned_cols=99 Identities=16% Similarity=0.262 Sum_probs=72.3
Q ss_pred eeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcC
Q 020527 100 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYG 179 (325)
Q Consensus 100 ~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~ 179 (325)
.++++.++|++++|+|||||||||+++.|++.+.+..|+|.+.+.|... .. ..+++
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r--~~-------------------a~eqL--- 151 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR--AA-------------------AIEQL--- 151 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC--HH-------------------HHHHH---
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc--HH-------------------HHHHH---
Confidence 3456678899999999999999999999999999988999988766421 10 01111
Q ss_pred CCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHH---HHHHHHcCCCCEEEEeCCCC
Q 020527 180 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI---AIARAILRDPAILLLDEATS 246 (325)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv---~iAral~~~p~llllDEPts 246 (325)
..+.+..++ + . ...+|+|+.|++ ++++|+..+|+++|+|||..
T Consensus 152 ----------~~~~~~~gl-------~--~-----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 152 ----------KIWGERVGA-------T--V-----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp ----------HHHHHHHTC-------E--E-----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred ----------HHHHHHcCC-------c--E-----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 111111111 1 0 024689999999 99999999999999999974
No 152
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.29 E-value=5e-12 Score=116.70 Aligned_cols=143 Identities=13% Similarity=0.207 Sum_probs=89.1
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCC
Q 020527 106 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVK 185 (325)
Q Consensus 106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~ 185 (325)
++|++++++|||||||||+++.|++.+.+++| ++|.++.+++ +..+..+++..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~--~r~~a~eqL~~------- 155 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDT--YRIAAVEQLKT------- 155 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCC--SSTTHHHHHHH-------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCc--ccchHHHHHHH-------
Confidence 47999999999999999999999999988778 2466666665 23333333321
Q ss_pred HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc
Q 020527 186 NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRN 265 (325)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~ 265 (325)
..+..+ .+. . ...+ +..-+.++++ +.+|+++|+| |+|+|+.....+.++.+-+..
T Consensus 156 ------~~~~~g-------l~~----~---~~~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~ 210 (296)
T 2px0_A 156 ------YAELLQ-------APL----E---VCYT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPF 210 (296)
T ss_dssp ------HHTTTT-------CCC----C---BCSS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCC
T ss_pred ------HHHhcC-------CCe----E---ecCC-HHHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhh
Confidence 000000 110 0 0112 3344666765 4899999999 899998776555554443321
Q ss_pred cCCCCeEEEE-EecCchHHHh-cCEEEEEeCCEEEEE
Q 020527 266 DCKTKRTVIV-IAHRLSTIKA-VDRIVVIDDGRIIEV 300 (325)
Q Consensus 266 ~~~~g~tvi~-vtH~~~~~~~-~d~v~~l~~G~i~~~ 300 (325)
....+..+++ +||+.+.+.. ++++..++.+.++..
T Consensus 211 ~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 211 ESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp CTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred cCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 1112334444 4899877754 777666667777654
No 153
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.28 E-value=1.9e-12 Score=114.85 Aligned_cols=171 Identities=16% Similarity=0.214 Sum_probs=91.2
Q ss_pred Cceeee-eEEeeCCcEEEEEcCCCChHHHHH-HHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccH
Q 020527 96 PILNHV-CLTIEANEVVAIVGLSGSGKSTFV-NLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDI 172 (325)
Q Consensus 96 ~iL~~i-sl~i~~Ge~~~iiG~nGsGKSTLl-~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv 172 (325)
+.|+.+ .--+++|++++|.||||||||||+ +++.+..+...+.++++... .........+.+++.+|+.... ..++
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~-~~~~~~~~~~~~g~~~~~~~~~~~l~~ 88 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE-HPVQVRQNMAQFGWDVKPYEEKGMFAM 88 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS-CHHHHHHHHHTTTCCCHHHHHHTSEEE
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC-CHHHHHHHHHHcCCCHHHHhhCCcEEE
Confidence 356666 557899999999999999999995 45555555544555555432 1101111223456655543110 1111
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc--CCCCEEEEeCCCCCC--
Q 020527 173 KSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL--RDPAILLLDEATSAL-- 248 (325)
Q Consensus 173 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~--~~p~llllDEPts~L-- 248 (325)
.+. +. ..... ..... ........+ ..+....++.++ .+|+++++|+|++.+
T Consensus 89 ~~~--~~--~~~~~---------------~~~~~----~~~~~~~~~--~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~ 143 (247)
T 2dr3_A 89 VDA--FT--AGIGK---------------SKEYE----KYIVHDLTD--IREFIEVLRQAIRDINAKRVVVDSVTTLYIN 143 (247)
T ss_dssp EEC--ST--TTTCC-----------------CCC----SCBCSCCSS--HHHHHHHHHHHHHHHTCCEEEEETSGGGTTT
T ss_pred Eec--ch--hhccc---------------ccccc----cccccCccC--HHHHHHHHHHHHHHhCCCEEEECCchHhhcC
Confidence 110 00 00000 00000 000001112 222233333333 479999999999988
Q ss_pred CHHHHHHHHHHHHHhhccCCCCeEEEEEecCchH--------H-HhcCEEEEEeC
Q 020527 249 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST--------I-KAVDRIVVIDD 294 (325)
Q Consensus 249 D~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~--------~-~~~d~v~~l~~ 294 (325)
|+....+++..+.++.++ .|+|||+++|.... + ..||.|+.|+.
T Consensus 144 ~~~~~~~~l~~l~~~~~~--~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 144 KPAMARSIILQLKRVLAG--TGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp CGGGHHHHHHHHHHHHHH--TTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHH--CCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 654445555555555443 48899999998764 3 34899999964
No 154
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.23 E-value=2.5e-11 Score=111.91 Aligned_cols=143 Identities=18% Similarity=0.155 Sum_probs=97.3
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 159 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~ 159 (325)
+.++++++.|+.. . ++++|+ +|++++++|+||+||||+++.|++++.+..|+|.+.+.++.. .....
T Consensus 77 ~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~--~~~~~---- 143 (295)
T 1ls1_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR--PAARE---- 143 (295)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC--HHHHH----
T ss_pred HHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc--HhHHH----
Confidence 5677788888642 2 788888 899999999999999999999999999999999998876532 11100
Q ss_pred EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEE
Q 020527 160 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 239 (325)
Q Consensus 160 ~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ll 239 (325)
| +. ++ .+..+ ++ ........+-.+.+|.+++++...+++++
T Consensus 144 ---q---l~--~~--------------------~~~~~-------l~----~~~~~~~~~p~~l~~~~l~~~~~~~~D~v 184 (295)
T 1ls1_A 144 ---Q---LR--LL--------------------GEKVG-------VP----VLEVMDGESPESIRRRVEEKARLEARDLI 184 (295)
T ss_dssp ---H---HH--HH--------------------HHHHT-------CC----EEECCTTCCHHHHHHHHHHHHHHHTCCEE
T ss_pred ---H---HH--Hh--------------------cccCC-------eE----EEEcCCCCCHHHHHHHHHHHHHhCCCCEE
Confidence 0 00 00 00000 10 00000112344567899999988999999
Q ss_pred EEeCC-CCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEec
Q 020527 240 LLDEA-TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH 278 (325)
Q Consensus 240 llDEP-ts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH 278 (325)
|+||| ++++|......+.++...+. ...+++++..
T Consensus 185 iiDtpp~~~~d~~~~~~l~~~~~~~~----~~~~~lv~~~ 220 (295)
T 1ls1_A 185 LVDTAGRLQIDEPLMGELARLKEVLG----PDEVLLVLDA 220 (295)
T ss_dssp EEECCCCSSCCHHHHHHHHHHHHHHC----CSEEEEEEEG
T ss_pred EEeCCCCccccHHHHHHHHHHhhhcC----CCEEEEEEeC
Confidence 99999 99999988887777776663 2345554443
No 155
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.23 E-value=3.9e-15 Score=135.85 Aligned_cols=139 Identities=16% Similarity=0.175 Sum_probs=95.3
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 159 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~ 159 (325)
-+++++.+.|.. ..+++++++++++| ++|+||||||||||+++|++... .|.|.+++.++........++.++
T Consensus 50 ~~l~~l~~~~~~---~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~ 122 (278)
T 1iy2_A 50 EELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 122 (278)
T ss_dssp HHHHHHHHHHHC---HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHH
T ss_pred HHHHHHHHHHHC---HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHH
Confidence 345666666743 35899999999999 99999999999999999999885 899999987664332233345678
Q ss_pred EEccCCc-Cc-cccHHHHH-hcCCCCCC----CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 020527 160 FVGQEPQ-LL-QMDIKSNI-MYGCPKDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 232 (325)
Q Consensus 160 ~v~Q~~~-l~-~~tv~enl-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 232 (325)
+++|... .+ ..++.|++ .++..... ..+..... +..++. .|||||+||+.+++|+
T Consensus 123 ~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~-----~~~ll~-------------~lsgg~~~~~~i~~a~ 184 (278)
T 1iy2_A 123 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT-----LNQLLV-------------EMDGFEKDTAIVVMAA 184 (278)
T ss_dssp HHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHH-----HHHHHH-------------HHTTCCTTCCEEEEEE
T ss_pred HHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHH-----HHHHHH-------------HHhCCCCCCCEEEEEe
Confidence 8888764 33 45777777 34321110 00111111 122222 3799999999999999
Q ss_pred cCCCCEEEEeCCC
Q 020527 233 LRDPAILLLDEAT 245 (325)
Q Consensus 233 ~~~p~llllDEPt 245 (325)
.++|++ +|++.
T Consensus 185 t~~p~~--ld~~l 195 (278)
T 1iy2_A 185 TNRPDI--LDPAL 195 (278)
T ss_dssp ESCTTS--SCHHH
T ss_pred cCCchh--CCHhH
Confidence 999987 57664
No 156
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.22 E-value=4.5e-15 Score=133.42 Aligned_cols=140 Identities=16% Similarity=0.169 Sum_probs=95.8
Q ss_pred EEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 020527 80 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 159 (325)
Q Consensus 80 i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~ 159 (325)
.+++++.+.|.. ..+++++++++++| ++|+||||||||||+++|++... .|.+.+++.++........++.++
T Consensus 26 ~~l~~l~~~~~~---~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~ 98 (254)
T 1ixz_A 26 EELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 98 (254)
T ss_dssp HHHHHHHHHHHC---HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHH
T ss_pred HHHHHHHHHHHC---HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHH
Confidence 456677766743 25899999999999 99999999999999999999875 889999987654332233345677
Q ss_pred EEccCCc-Cc-cccHHHHH-hcCCCCCC----CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 020527 160 FVGQEPQ-LL-QMDIKSNI-MYGCPKDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 232 (325)
Q Consensus 160 ~v~Q~~~-l~-~~tv~enl-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 232 (325)
+++|... .+ ..++.|++ .++..... ..+..... +..++. .|||||+||+.+++|+
T Consensus 99 ~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~-----~~~ll~-------------~l~g~~~~~~~i~~a~ 160 (254)
T 1ixz_A 99 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT-----LNQLLV-------------EMDGFEKDTAIVVMAA 160 (254)
T ss_dssp HHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHH-----HHHHHH-------------HHHTCCTTCCEEEEEE
T ss_pred HHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHH-----HHHHHH-------------HHhCCCCCCCEEEEEc
Confidence 8888764 33 45677777 34321110 01111111 122222 3799999999999999
Q ss_pred cCCCCEEEEeCCCC
Q 020527 233 LRDPAILLLDEATS 246 (325)
Q Consensus 233 ~~~p~llllDEPts 246 (325)
.++|++ +|++.-
T Consensus 161 t~~p~~--ld~~l~ 172 (254)
T 1ixz_A 161 TNRPDI--LDPALL 172 (254)
T ss_dssp ESCGGG--SCGGGG
T ss_pred cCCchh--CCHHHc
Confidence 999987 687764
No 157
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=99.21 E-value=2.8e-13 Score=120.34 Aligned_cols=75 Identities=13% Similarity=0.193 Sum_probs=51.7
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCH-------
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI------- 151 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~------- 151 (325)
.|+++|++..|+ . ++++.+ ++++|+||||||||||+++|+|++.|++|+|.++|.++...++
T Consensus 9 ~l~l~~~~~~~~---------~-~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (227)
T 1qhl_A 9 SLTLINWNGFFA---------R-TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGL 77 (227)
T ss_dssp EEEEEEETTEEE---------E-EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------C
T ss_pred EEEEEeeecccC---------C-EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccch
Confidence 488888865442 1 566777 8999999999999999999999999999999999988743221
Q ss_pred -HHHhcceEEEccC
Q 020527 152 -RWLREKIGFVGQE 164 (325)
Q Consensus 152 -~~~r~~i~~v~Q~ 164 (325)
...+..++|++|+
T Consensus 78 ~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 78 HGKLKAGVCYSMLD 91 (227)
T ss_dssp GGGBCSSEEEEEEE
T ss_pred hhHhhcCcEEEEEe
Confidence 1235679999985
No 158
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=99.21 E-value=4.4e-11 Score=112.79 Aligned_cols=144 Identities=20% Similarity=0.246 Sum_probs=83.0
Q ss_pred EeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEE-CCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCC
Q 020527 104 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI-DGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK 182 (325)
Q Consensus 104 ~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i-~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~ 182 (325)
-+++|+++.|.||+|||||||+..++.......|.+.| +... ..+. .+.+++|+-+++.. +.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~--~~~~-~~a~~lG~~~~~l~-----------i~--- 119 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH--ALDP-EYAKKLGVDTDSLL-----------VS--- 119 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCH-HHHHHTTCCGGGCE-----------EE---
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CcCH-HHHHHcCCCHHHeE-----------Ee---
Confidence 47899999999999999999988777554433444333 3221 1111 11111222111110 00
Q ss_pred CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC--CCEEEEeCCCCCC----------CH
Q 020527 183 DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD--PAILLLDEATSAL----------DS 250 (325)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~--p~llllDEPts~L----------D~ 250 (325)
...+. .|-+.++++++.+ |+++++|||++.+ |+
T Consensus 120 ---------------------------------~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~ 164 (349)
T 2zr9_A 120 ---------------------------------QPDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDS 164 (349)
T ss_dssp ---------------------------------CCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----
T ss_pred ---------------------------------cCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccc
Confidence 00122 2334577777754 9999999999998 32
Q ss_pred ---HHHHHHHHHHHHhh---ccCCCCeEEEEEecCch----------------HHHh-cCEEEEEeCCEEEEEc
Q 020527 251 ---ESEHYVKGVLHALR---NDCKTKRTVIVIAHRLS----------------TIKA-VDRIVVIDDGRIIEVG 301 (325)
Q Consensus 251 ---~~~~~i~~~l~~l~---~~~~~g~tvi~vtH~~~----------------~~~~-~d~v~~l~~G~i~~~g 301 (325)
...+.+.+.++++. ++ .++|||+++|-.. .++. ||.++.++.++++..|
T Consensus 165 ~~~~q~r~~~~~l~~L~~~a~~--~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g 236 (349)
T 2zr9_A 165 HVGLQARLMSQALRKMTGALNN--SGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDG 236 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH--HTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSS
T ss_pred hhhHHHHHHHHHHHHHHHHHHH--hCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecC
Confidence 12223444444442 32 4889999999543 1444 8999999877655443
No 159
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.20 E-value=4e-15 Score=142.30 Aligned_cols=170 Identities=14% Similarity=0.131 Sum_probs=106.2
Q ss_pred EeeCCcEEEEEcCCCChHHHHHHHHHc------------CCCCCCCeEEECCEeCCCCCH-HHHhcce---EEEccCCcC
Q 020527 104 TIEANEVVAIVGLSGSGKSTFVNLLLR------------LYEPSDGQIYIDGFPLTDLDI-RWLREKI---GFVGQEPQL 167 (325)
Q Consensus 104 ~i~~Ge~~~iiG~nGsGKSTLl~~l~g------------l~~~~~G~I~i~g~~i~~~~~-~~~r~~i---~~v~Q~~~l 167 (325)
++++|..++|+|+||||||||+++|+| ...|++|.+.++|..+..+.. ..-++.+ .++.+.|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 467899999999999999999999999 667999999998854321100 0001222 355666655
Q ss_pred cc-ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC--CEEEEeCC
Q 020527 168 LQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP--AILLLDEA 244 (325)
Q Consensus 168 ~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p--~llllDEP 244 (325)
+. .+..+++ ... .....+.+. ..+.-.....+ .....+||+. +| +++++|||
T Consensus 96 ~~~~s~~e~L--------~~~-fl~~ir~~d--~il~Vvd~~~d--~~i~~v~~~~------------dP~~di~ildee 150 (392)
T 1ni3_A 96 TKGASTGVGL--------GNA-FLSHVRAVD--AIYQVVRAFDD--AEIIHVEGDV------------DPIRDLSIIVDE 150 (392)
T ss_dssp CCCCCSSSSS--------CHH-HHHHHTTCS--EEEEEEECCCT--TCSSCCSSSS------------CHHHHHHHHHHH
T ss_pred ccCCcHHHHH--------HHH-HHHHHHHHH--HHHHHHhcccc--ceeeeecccc------------Ccchhhhhchhh
Confidence 42 2332221 111 111111110 00000000000 0011255542 89 99999999
Q ss_pred CCCCCHHHHHHHHHHHHHh-hccCCCCeEEEEEecCchHHHh-cCEEE-EEeCC-EEEEEcCh
Q 020527 245 TSALDSESEHYVKGVLHAL-RNDCKTKRTVIVIAHRLSTIKA-VDRIV-VIDDG-RIIEVGNH 303 (325)
Q Consensus 245 ts~LD~~~~~~i~~~l~~l-~~~~~~g~tvi~vtH~~~~~~~-~d~v~-~l~~G-~i~~~g~~ 303 (325)
++.+|+....+.++.+... .+ .|.|++ +|++..+.. ||++. +|++| +++..|+.
T Consensus 151 l~~~D~~~~~k~~~~l~~~~~~---~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 151 LLIKDAEFVEKHLEGLRKITSR---GANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCC---SSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHh---cCCccc--cccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 9999999999888888887 43 366753 999988764 99998 99999 87765543
No 160
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.20 E-value=7.9e-13 Score=113.56 Aligned_cols=141 Identities=19% Similarity=0.113 Sum_probs=76.9
Q ss_pred EEEEEcCCCChHHHHHHHHHcCCCC-----------CCCeEEECCEeCCC--CCHHHHhcceEEEccCCcCc--cccHHH
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLYEP-----------SDGQIYIDGFPLTD--LDIRWLREKIGFVGQEPQLL--QMDIKS 174 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~~~-----------~~G~I~i~g~~i~~--~~~~~~r~~i~~v~Q~~~l~--~~tv~e 174 (325)
.++|+|+||||||||++.++|...+ .+|+|.++|+++.- ++....++..++++|...-. ...|+|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 6899999999999999999998765 57899999976521 11111112233333321100 112222
Q ss_pred HHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcc--cccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHH
Q 020527 175 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYE--TLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 252 (325)
Q Consensus 175 nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~ 252 (325)
+.... ..+.+..... ++......... .......|..-..+.+.+|++++.+|+++++| ||++|..+
T Consensus 111 ~~~~~-----s~~~~~~~~~-----~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~ 178 (191)
T 1oix_A 111 IAKHL-----TYENVERWLK-----ELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTN 178 (191)
T ss_dssp TTCHH-----HHHTHHHHHH-----HHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTT
T ss_pred CcCHH-----HHHHHHHHHH-----HHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEE--EeCCCCCC
Confidence 11000 0000111111 01110000000 00001123332234578899999999999999 99999999
Q ss_pred HHHHHHHHHH
Q 020527 253 EHYVKGVLHA 262 (325)
Q Consensus 253 ~~~i~~~l~~ 262 (325)
...+++.+.+
T Consensus 179 v~~l~~~l~~ 188 (191)
T 1oix_A 179 VEAAFQTILT 188 (191)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988888754
No 161
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=99.20 E-value=1.3e-12 Score=128.71 Aligned_cols=169 Identities=15% Similarity=0.132 Sum_probs=95.9
Q ss_pred eeeeEEeeCCcEEEEEcCCCChHHHHHHHHHc--CCCCCCCeEEECCEeCCCCCHHHHhc--c-eEEEccCCcCccccHH
Q 020527 99 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR--LYEPSDGQIYIDGFPLTDLDIRWLRE--K-IGFVGQEPQLLQMDIK 173 (325)
Q Consensus 99 ~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~g--l~~~~~G~I~i~g~~i~~~~~~~~r~--~-i~~v~Q~~~l~~~tv~ 173 (325)
+.+++++.++..++|.|++||||||+++.|.. ++.++.|++.+.+.|.+......+.. + .+.|.+++. -+.
T Consensus 158 ~pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~lPhl~~~Vvtd~~----~a~ 233 (512)
T 2ius_A 158 EPVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMK----DAA 233 (512)
T ss_dssp CEEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTTCTTBSSSCBCSHH----HHH
T ss_pred CEEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhccCCcccceeecCHH----HHH
Confidence 35788899999999999999999999999886 67777899988888766432222210 0 001111110 011
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHH----------HHHHHHcCCCC-EEEEe
Q 020527 174 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI----------AIARAILRDPA-ILLLD 242 (325)
Q Consensus 174 enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv----------~iAral~~~p~-llllD 242 (325)
+.+... ... .++..+.+...++.++.. +... ....+|+||+|+. ++|+++...|. ++++|
T Consensus 234 ~~L~~~--~~E-merR~~ll~~~Gv~~i~~-----yn~~-~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvID 304 (512)
T 2ius_A 234 NALRWC--VNE-MERRYKLMSALGVRNLAG-----YNEK-IAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVD 304 (512)
T ss_dssp HHHHHH--HHH-HHHHHHHHHHTTCSSHHH-----HHHH-HHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEE
T ss_pred HHHHHH--HHH-HHHHHHHHHHcCCccHHH-----HHHH-HHHHhhcCCcccccccccccchhccccccccCCcEEEEEe
Confidence 111110 000 000011122222111100 0000 0013678887752 46677788898 89999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhccC-CCCeEEEEEecCch
Q 020527 243 EATSALDSESEHYVKGVLHALRNDC-KTKRTVIVIAHRLS 281 (325)
Q Consensus 243 EPts~LD~~~~~~i~~~l~~l~~~~-~~g~tvi~vtH~~~ 281 (325)
|+++-+|.. ...+.+.+.++.+.. ..|.++|++||+++
T Consensus 305 E~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 305 EFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp THHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred CHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 999988843 345666666664432 23899999999987
No 162
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=99.13 E-value=7.5e-12 Score=122.09 Aligned_cols=179 Identities=13% Similarity=0.158 Sum_probs=108.8
Q ss_pred CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCC-eEEECCEeCCCCCHHHHhcce-EEEccCCcCccccHH
Q 020527 96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-QIYIDGFPLTDLDIRWLREKI-GFVGQEPQLLQMDIK 173 (325)
Q Consensus 96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G-~I~i~g~~i~~~~~~~~r~~i-~~v~Q~~~l~~~tv~ 173 (325)
+.|+++..-+++|+++.|.|++|+|||||+..+++...+..| .|.+.+.+ .+..++.+++ +.... .. .
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E---~s~~~l~~r~~~~~~~------~~-~ 260 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE---MSAQQLVMRMLCAEGN------IN-A 260 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS---SCHHHHHHHHHHHHHT------CC-H
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC---CCHHHHHHHHHHHHcC------CC-H
Confidence 578888878999999999999999999999999987766555 56665433 2333333221 10000 00 1
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc--CCCCEEEEeCCCCCCCH-
Q 020527 174 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL--RDPAILLLDEATSALDS- 250 (325)
Q Consensus 174 enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~--~~p~llllDEPts~LD~- 250 (325)
+.+..| ....+......+. .+.+...+.- ......+|.+|.+ +.+|.+. .+|+++++|+++.-.+.
T Consensus 261 ~~l~~g---~l~~~~~~~~~~a---~~~l~~~~l~---i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~ 329 (454)
T 2r6a_A 261 QNLRTG---KLTPEDWGKLTMA---MGSLSNAGIY---IDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSG 329 (454)
T ss_dssp HHHHTS---CCCHHHHHHHHHH---HHHHHSSCEE---EECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSC
T ss_pred HHHhcC---CCCHHHHHHHHHH---HHHHhcCCEE---EECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCC
Confidence 122222 1223222222111 1112222211 1112468999876 5667666 68999999999997743
Q ss_pred -------HHHHHHHHHHHHhhccCCCCeEEEEEec---------C--ch--------HHH-hcCEEEEEeCCEE
Q 020527 251 -------ESEHYVKGVLHALRNDCKTKRTVIVIAH---------R--LS--------TIK-AVDRIVVIDDGRI 297 (325)
Q Consensus 251 -------~~~~~i~~~l~~l~~~~~~g~tvi~vtH---------~--~~--------~~~-~~d~v~~l~~G~i 297 (325)
.....+.+.|+.++++ .+++||+++| + +. .+. .||.|++|..++.
T Consensus 330 ~~~~~~~~~i~~i~~~Lk~lAke--~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 330 RSKENRQQEVSEISRSLKALARE--LEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp C----CHHHHHHHHHHHHHHHHH--HTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHH--hCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 2335566667777654 4889999999 3 32 344 4999999986654
No 163
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.11 E-value=2.1e-12 Score=130.38 Aligned_cols=156 Identities=13% Similarity=0.138 Sum_probs=102.1
Q ss_pred CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCC-CeEEECCEeCCCCCHHHHhcceEEEccCCc--------
Q 020527 96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-GQIYIDGFPLTDLDIRWLREKIGFVGQEPQ-------- 166 (325)
Q Consensus 96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~-G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~-------- 166 (325)
.+++++++.+.+|+.++|+||||+|||||+++|++++++.. |.+.+++.+.... ...++++|+...
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHHHH
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHHHH
Confidence 58999999999999999999999999999999999999887 7888888665432 345888876541
Q ss_pred --------------Cc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 020527 167 --------------LL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 231 (325)
Q Consensus 167 --------------l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 231 (325)
.+ ..++.+|+............+.. ......++..... +... ....+|+|++|++..++.
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~--~~~~~~~L~G~~~--~~~~-~~g~~~~g~~~~i~~g~~ 197 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA--TGAHAGALLGDVR--HDPF-QSGGLGTPAHERVEPGMI 197 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC--TTCCHHHHHCEEC--CCCC-----CCCCGGGGEECCHH
T ss_pred HhhccchhhhhhcccccccccccceeeccccCCCCCEEEc--CCCCHHhcCceEE--echh-hcCCccccccccccCcee
Confidence 11 23334444322110000000000 0011112221111 0000 013589999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 020527 232 ILRDPAILLLDEATSALDSESEHYVKGVLHA 262 (325)
Q Consensus 232 l~~~p~llllDEPts~LD~~~~~~i~~~l~~ 262 (325)
...++.+|++||... |++.....+++.|++
T Consensus 198 ~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 198 HRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 999999999999987 899999988888875
No 164
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.03 E-value=4.8e-11 Score=105.53 Aligned_cols=183 Identities=13% Similarity=0.133 Sum_probs=72.0
Q ss_pred CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHH-cCCCCCCCeEEECCEeCCCCCHH-HHhcceEEEccCCcCc-cccH
Q 020527 96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL-RLYEPSDGQIYIDGFPLTDLDIR-WLREKIGFVGQEPQLL-QMDI 172 (325)
Q Consensus 96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~-gl~~~~~G~I~i~g~~i~~~~~~-~~r~~i~~v~Q~~~l~-~~tv 172 (325)
+..+++||++++|++++|+||||||||||+++|+ |++++ + +++.++....+. .....+.|.++++..| ..+.
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~----~-~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~ 89 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN----I-VKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCS 89 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----C----E-EECCCEESSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC----c-ccccccCCCCCCccccCCCeEEEecHHHhhhhhh
Confidence 4678999999999999999999999999999999 99854 1 223222111110 0112345666666544 2344
Q ss_pred HHHHhcC----C-CCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCCh--HHHHHH-HHH-HHHcCCCCEEEEeC
Q 020527 173 KSNIMYG----C-PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSG--GQKQRI-AIA-RAILRDPAILLLDE 243 (325)
Q Consensus 173 ~enl~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSg--Gq~QRv-~iA-ral~~~p~llllDE 243 (325)
.+++... . ......+.+.+..+... ..... -.+.| .-+++. .-+ ..++..|+..++||
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------~vild-~~~~g~~~~~~~~~~~~~~v~v~~~~~~~l~~ 156 (231)
T 3lnc_A 90 NGEIIEHAEVFGNFYGVPRKNLEDNVDKGV------------STLLV-IDWQGAFKFMEMMREHVVSIFIMPPSMEELRR 156 (231)
T ss_dssp TTCEEEEEEETTEEEEEECTTHHHHHHHTC------------EEEEE-CCHHHHHHHHHHSGGGEEEEEEECSCHHHHHH
T ss_pred cCceehhhhhccccCCCCHHHHHHHHHcCC------------eEEEE-cCHHHHHHHHHhcCCCeEEEEEECCcHHHHHH
Confidence 4443210 0 00000111222222100 00000 00111 113332 111 23356777778889
Q ss_pred CCCCCCHHHHHHHHHHHHHhhccC--CCCeEEEEEecCchHHH-hcCEEEEEeCCE
Q 020527 244 ATSALDSESEHYVKGVLHALRNDC--KTKRTVIVIAHRLSTIK-AVDRIVVIDDGR 296 (325)
Q Consensus 244 Pts~LD~~~~~~i~~~l~~l~~~~--~~g~tvi~vtH~~~~~~-~~d~v~~l~~G~ 296 (325)
++.+.|..+.+.+.+.+.....+. .....+++++|+++.+. .+++++...+++
T Consensus 157 Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i~~~~~~ 212 (231)
T 3lnc_A 157 RLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNILRAEQMK 212 (231)
T ss_dssp C--------------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHHHHHHTB
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHHHHHhhc
Confidence 999998877777766665432210 12346777788777653 355554433444
No 165
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.01 E-value=1.8e-11 Score=110.14 Aligned_cols=72 Identities=21% Similarity=0.242 Sum_probs=59.6
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHH---cCCCCCCCeEE--------ECCEeCC-CCCHHHHhcceEEEccCC------cC
Q 020527 106 EANEVVAIVGLSGSGKSTFVNLLL---RLYEPSDGQIY--------IDGFPLT-DLDIRWLREKIGFVGQEP------QL 167 (325)
Q Consensus 106 ~~Ge~~~iiG~nGsGKSTLl~~l~---gl~~~~~G~I~--------i~g~~i~-~~~~~~~r~~i~~v~Q~~------~l 167 (325)
++|++++|+|||||||||++++|+ |+..|++|.++ .+|.++. ......+++.+++++|.+ .+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL 104 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence 789999999999999999999999 99999999999 9998884 334567888999999754 23
Q ss_pred ccccHHHHHh
Q 020527 168 LQMDIKSNIM 177 (325)
Q Consensus 168 ~~~tv~enl~ 177 (325)
+..++.+|+.
T Consensus 105 ~~~~v~~~i~ 114 (252)
T 4e22_A 105 EGEDVSNEIR 114 (252)
T ss_dssp TTEECTTGGG
T ss_pred CCeehhHHHH
Confidence 3456766654
No 166
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.97 E-value=7.8e-11 Score=101.36 Aligned_cols=36 Identities=25% Similarity=0.191 Sum_probs=31.3
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q 020527 226 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 263 (325)
Q Consensus 226 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l 263 (325)
...|++++.+|+++++| ||++|......+++.+.+.
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTE 165 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHH
Confidence 45689999999999999 9999999998888877554
No 167
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.89 E-value=6.7e-10 Score=113.18 Aligned_cols=134 Identities=19% Similarity=0.189 Sum_probs=89.8
Q ss_pred eEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCC--CCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcC
Q 020527 102 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP--SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYG 179 (325)
Q Consensus 102 sl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~--~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~ 179 (325)
|+++++|..++|+|++|+|||||++.|++...+ ..|+| .+|..+.++...+.++.+++.+|...++..++..|+.-.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 456788999999999999999999999977654 67988 788888777777778889999998877655555554321
Q ss_pred CCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHH
Q 020527 180 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV 259 (325)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~ 259 (325)
+... + ++ .+ .....-..++-++++| |+.++++.+...+ +.
T Consensus 82 -pG~~-~-------------------------------f~-~~----~~~~l~~ad~~ilVvD-~~~g~~~qt~~~~-~~ 121 (665)
T 2dy1_A 82 -PGYG-D-------------------------------FV-GE----IRGALEAADAALVAVS-AEAGVQVGTERAW-TV 121 (665)
T ss_dssp -CCSG-G-------------------------------GH-HH----HHHHHHHCSEEEEEEE-TTTCSCHHHHHHH-HH
T ss_pred -CCcc-c-------------------------------hH-HH----HHHHHhhcCcEEEEEc-CCcccchhHHHHH-HH
Confidence 1010 0 00 00 1111123567788888 9999998776332 22
Q ss_pred HHHhhccCCCCeEEEEEecCchH
Q 020527 260 LHALRNDCKTKRTVIVIAHRLST 282 (325)
Q Consensus 260 l~~l~~~~~~g~tvi~vtH~~~~ 282 (325)
+.+ .+..+|++.|.++.
T Consensus 122 ---~~~---~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 122 ---AER---LGLPRMVVVTKLDK 138 (665)
T ss_dssp ---HHH---TTCCEEEEEECGGG
T ss_pred ---HHH---ccCCEEEEecCCch
Confidence 222 25678888888764
No 168
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.87 E-value=2.1e-10 Score=99.22 Aligned_cols=70 Identities=17% Similarity=0.156 Sum_probs=49.1
Q ss_pred eEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHHHHH
Q 020527 102 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNI 176 (325)
Q Consensus 102 sl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~enl 176 (325)
.++-++|++++|+||||||||||+++|++.+ |.+.++|.++... ....+..+++++|++..+ ..++.+|+
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~ 93 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDEDRWPWLRSLAEW 93 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCcccccHHHHHHHH
Confidence 3566789999999999999999999999987 8999999876421 112233578888886554 34555554
No 169
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.85 E-value=6.1e-12 Score=119.78 Aligned_cols=137 Identities=13% Similarity=0.113 Sum_probs=83.2
Q ss_pred CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc--cccHH
Q 020527 96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL--QMDIK 173 (325)
Q Consensus 96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~--~~tv~ 173 (325)
.+++++|+.+++|++++|+||||||||||+++|+|. .+|++..-+ ... ..++..++++||.+.++ ..+..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~--~~~---~~~~~~lg~~~q~~~~l~dd~~~~ 228 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVN--LPL---DRLNFELGVAIDQFLVVFEDVKGT 228 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCS--SCT---TTHHHHHGGGTTCSCEEETTCCCS
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEe--ccc---hhHHHHHHHhcchhHHHHHHHHHH
Confidence 589999999999999999999999999999999995 467776511 111 11222477888887542 22221
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhC---------CCCccc-------ccCCCCCChHHHHHHHHHHHHcCCCC
Q 020527 174 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSL---------PCGYET-------LVDDDLLSGGQKQRIAIARAILRDPA 237 (325)
Q Consensus 174 enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~-------~~~~~~LSgGq~QRv~iAral~~~p~ 237 (325)
.++.-... ... ... ....+.+.++.. +..... ......+++|++||+..+.+++.+|+
T Consensus 229 ~~~~r~l~--~~~-~~~---~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pD 302 (377)
T 1svm_A 229 GGESRDLP--SGQ-GIN---NLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDY 302 (377)
T ss_dssp TTTTTTCC--CCS-HHH---HHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHH
T ss_pred HHHHhhcc--ccC-cch---HHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCC
Confidence 11100000 001 100 111223333210 000000 01124589999999999888899999
Q ss_pred EEE-EeCCCC
Q 020527 238 ILL-LDEATS 246 (325)
Q Consensus 238 lll-lDEPts 246 (325)
+++ ||+|+.
T Consensus 303 LliyLd~~~~ 312 (377)
T 1svm_A 303 LKHCLERSEF 312 (377)
T ss_dssp HHHHHHTCTH
T ss_pred eEEEEeCCHH
Confidence 988 999987
No 170
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.83 E-value=5.6e-09 Score=98.50 Aligned_cols=61 Identities=20% Similarity=0.209 Sum_probs=45.3
Q ss_pred EeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeE-EECCEeCCCCCHHHHhcceEEEccCCcC
Q 020527 104 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI-YIDGFPLTDLDIRWLREKIGFVGQEPQL 167 (325)
Q Consensus 104 ~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I-~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 167 (325)
-+++|+++.|.||+|||||||+..+++...+..|.+ ++++.... +. .+.+++++.+|+..+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~--~~-~ra~rlgv~~~~l~i 118 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL--DP-VYAKNLGVDLKSLLI 118 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--CH-HHHHHHTCCGGGCEE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc--ch-HHHHHcCCchhhhhh
Confidence 378999999999999999999999999888777866 55554322 22 244567777766443
No 171
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.83 E-value=2.5e-11 Score=106.56 Aligned_cols=69 Identities=22% Similarity=0.253 Sum_probs=52.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCC---CCCCCeEEE--------CCEeCCC-CCHHHHhcceEEEccCCc------Ccc
Q 020527 108 NEVVAIVGLSGSGKSTFVNLLLRLY---EPSDGQIYI--------DGFPLTD-LDIRWLREKIGFVGQEPQ------LLQ 169 (325)
Q Consensus 108 Ge~~~iiG~nGsGKSTLl~~l~gl~---~~~~G~I~i--------~g~~i~~-~~~~~~r~~i~~v~Q~~~------l~~ 169 (325)
+.+++|+|||||||||+.++|++.+ .+++|++.. +|.++.. ....++++++++++|++. +..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 5689999999999999999999876 778899887 6766542 223457788999998752 234
Q ss_pred ccHHHHH
Q 020527 170 MDIKSNI 176 (325)
Q Consensus 170 ~tv~enl 176 (325)
.++.+++
T Consensus 85 ~~v~~~~ 91 (227)
T 1cke_A 85 EDVSGEI 91 (227)
T ss_dssp EECHHHH
T ss_pred eeCchhh
Confidence 4666665
No 172
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.81 E-value=2e-09 Score=91.25 Aligned_cols=69 Identities=17% Similarity=0.140 Sum_probs=49.4
Q ss_pred ce--eeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCE--eCCCCCH----HHHhcceEEEccCCc
Q 020527 97 IL--NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF--PLTDLDI----RWLREKIGFVGQEPQ 166 (325)
Q Consensus 97 iL--~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~--~i~~~~~----~~~r~~i~~v~Q~~~ 166 (325)
.+ +++++++.+| +++|+||||||||||+++|.+++.+..|...-.+. ++..... ...+..|.+++|++.
T Consensus 14 ~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~ 90 (182)
T 3kta_A 14 SYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNED 90 (182)
T ss_dssp GGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTT
T ss_pred eecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCC
Confidence 56 7899999999 99999999999999999999998887775432221 1111110 012456999999863
No 173
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.79 E-value=2.2e-09 Score=101.36 Aligned_cols=174 Identities=16% Similarity=0.180 Sum_probs=85.9
Q ss_pred CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHc--CCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcC-c-c-c
Q 020527 96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR--LYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQL-L-Q-M 170 (325)
Q Consensus 96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~g--l~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l-~-~-~ 170 (325)
.+|++++++++ .++|+|++|||||||++.|.| ++++.+|.+.-....+.-.....-....+..++.+.. | . .
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFA 101 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHH
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHH
Confidence 58999999998 899999999999999999999 6788888765443322100000001223333332211 1 1 0
Q ss_pred cHHH-----HHhc-CCCCCCCHHHHH-HHH--HHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEE
Q 020527 171 DIKS-----NIMY-GCPKDVKNEDIE-WAA--KQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLL 241 (325)
Q Consensus 171 tv~e-----nl~~-~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llll 241 (325)
.+.+ +... +.........+. ... ....+ .++ ..| |+.......+.++.++|+..++++.+.+|+++|+
T Consensus 102 ~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l-~lv-DtP-G~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iil 178 (360)
T 3t34_A 102 AVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNL-TLI-DLP-GLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIIL 178 (360)
T ss_dssp HHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSE-EEE-ECC-CBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEE
T ss_pred HHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCe-EEE-ECC-CCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEE
Confidence 1111 1111 000000000000 000 00000 000 111 2111111134678899999999999999998888
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEec
Q 020527 242 DEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH 278 (325)
Q Consensus 242 DEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH 278 (325)
.-..+..|..+ ....++++.+... ...+++++|.
T Consensus 179 vv~~~~~~~~~-~~~~~l~~~~~~~--~~~~i~V~nK 212 (360)
T 3t34_A 179 AISPANQDLAT-SDAIKISREVDPS--GDRTFGVLTK 212 (360)
T ss_dssp EEEETTSCGGG-CHHHHHHHHSCTT--CTTEEEEEEC
T ss_pred EeecccCCcCC-HHHHHHHHHhccc--CCCEEEEEeC
Confidence 74444455544 3445666666432 2357777776
No 174
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.77 E-value=4.7e-10 Score=100.97 Aligned_cols=52 Identities=19% Similarity=0.316 Sum_probs=35.7
Q ss_pred cEEEEEE-EEECCCCCCCCceeeeeEEeeC---CcEEEEEcCCCChHHHHHHHHHcCC
Q 020527 79 HVQFVNI-SFHYPSRPTVPILNHVCLTIEA---NEVVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 79 ~i~~~~v-~~~y~~~~~~~iL~~isl~i~~---Ge~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.++++|+ +|+|++ ..++|+++||+|++ |++++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~~--~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE--EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC--cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 999932 24699999999999 9999999999999999999999854
No 175
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.77 E-value=1.1e-08 Score=99.97 Aligned_cols=118 Identities=18% Similarity=0.274 Sum_probs=77.2
Q ss_pred CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHH
Q 020527 96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSN 175 (325)
Q Consensus 96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~en 175 (325)
..++++++.+++| +.|+||+|+|||||++++++... .. ++..+..+.
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~----------------------~~---------f~~is~~~~ 85 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEAN----------------------VP---------FFHISGSDF 85 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHT----------------------CC---------EEEEEGGGT
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcC----------------------CC---------eeeCCHHHH
Confidence 3677788888887 88999999999999999998321 00 011111111
Q ss_pred HhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCC----------
Q 020527 176 IMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEAT---------- 245 (325)
Q Consensus 176 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPt---------- 245 (325)
+.. +. + +|++++|-.+++|....|.+|++||+.
T Consensus 86 ~~~--------------------------~~-g----------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~ 128 (476)
T 2ce7_A 86 VEL--------------------------FV-G----------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGL 128 (476)
T ss_dssp TTC--------------------------CT-T----------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC-----
T ss_pred HHH--------------------------Hh-c----------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhccccc
Confidence 000 00 1 367889999999999999999999994
Q ss_pred CCCCHHHHHHHHHHHHHhhcc-CCCCeEEEEEecCchHH
Q 020527 246 SALDSESEHYVKGVLHALRND-CKTKRTVIVIAHRLSTI 283 (325)
Q Consensus 246 s~LD~~~~~~i~~~l~~l~~~-~~~g~tvi~vtH~~~~~ 283 (325)
++.|......+.+++..+..- ...+..||.+||+++.+
T Consensus 129 ~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 129 GGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp ----CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred CcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 466776666666666655310 02367899999998643
No 176
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.77 E-value=1.6e-09 Score=92.67 Aligned_cols=26 Identities=38% Similarity=0.606 Sum_probs=24.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCCC
Q 020527 108 NEVVAIVGLSGSGKSTFVNLLLRLYE 133 (325)
Q Consensus 108 Ge~~~iiG~nGsGKSTLl~~l~gl~~ 133 (325)
|++++|+||||||||||+++|+|+++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 67899999999999999999999998
No 177
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.76 E-value=2e-09 Score=92.74 Aligned_cols=63 Identities=14% Similarity=0.160 Sum_probs=41.2
Q ss_pred EEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc
Q 020527 103 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL 168 (325)
Q Consensus 103 l~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~ 168 (325)
++|++|++++|+|||||||||++++|++++.|+.| +.+ +....... ......++|+||++..|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~~~ 63 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRDAF 63 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHHHH
Confidence 46889999999999999999999999999977655 112 12211111 11123478888876443
No 178
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.74 E-value=4.8e-11 Score=117.44 Aligned_cols=140 Identities=16% Similarity=0.172 Sum_probs=95.3
Q ss_pred EEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 020527 81 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 160 (325)
Q Consensus 81 ~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~ 160 (325)
+++++...|.. ..+++++++.+++| +.|+||||+|||||+++|++... .+.+.+++.++.........+++..
T Consensus 42 ~l~~lv~~l~~---~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~ 114 (499)
T 2dhr_A 42 ELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 114 (499)
T ss_dssp HHHHHHHHHHC---GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHH
T ss_pred HHHHHHHHhhc---hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHH
Confidence 34455444532 25889999999999 99999999999999999999875 7899999988755433333456778
Q ss_pred EccCCc-Cc-cccHHHHH-hcCCCCCC----CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 020527 161 VGQEPQ-LL-QMDIKSNI-MYGCPKDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 233 (325)
Q Consensus 161 v~Q~~~-l~-~~tv~enl-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 233 (325)
+||... .. ...+.|++ .++..... ..+..... +..++. .||||++|+..+++|..
T Consensus 115 lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~-----l~~LL~-------------~Ldg~~~~~~viviAat 176 (499)
T 2dhr_A 115 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT-----LNQLLV-------------EMDGFEKDTAIVVMAAT 176 (499)
T ss_dssp HTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHH-----HHHHHH-------------HGGGCCSSCCCEEEECC
T ss_pred HHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHH-----HHHHHH-------------HhcccccCccEEEEEec
Confidence 888764 23 34667777 34321110 11111111 122232 27899999999999999
Q ss_pred CCCCEEEEeCCCCC
Q 020527 234 RDPAILLLDEATSA 247 (325)
Q Consensus 234 ~~p~llllDEPts~ 247 (325)
++|++ ||||.-.
T Consensus 177 n~p~~--LD~aLlr 188 (499)
T 2dhr_A 177 NRPDI--LDPALLR 188 (499)
T ss_dssp SCGGG--SCTTTSS
T ss_pred CChhh--cCccccc
Confidence 99987 7998763
No 179
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.74 E-value=2.4e-09 Score=99.72 Aligned_cols=79 Identities=14% Similarity=0.162 Sum_probs=60.0
Q ss_pred eeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCH----HHH-----hcceEEE-ccCCcC
Q 020527 98 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI----RWL-----REKIGFV-GQEPQL 167 (325)
Q Consensus 98 L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~----~~~-----r~~i~~v-~Q~~~l 167 (325)
++++||++++|++++++|+||+||||++..|++.+.+..|+|.+.+.|+..... ..+ +..+.++ +|....
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~ 174 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNA 174 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCC
Confidence 478999999999999999999999999999999999999999998877643221 233 5578899 665443
Q ss_pred cc-ccHHHHH
Q 020527 168 LQ-MDIKSNI 176 (325)
Q Consensus 168 ~~-~tv~enl 176 (325)
.+ .++++++
T Consensus 175 ~p~~~~~~~l 184 (320)
T 1zu4_A 175 DPASVVFDAI 184 (320)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 32 2444444
No 180
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.73 E-value=7.5e-10 Score=94.23 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=29.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCCCC-CCCeEEE
Q 020527 107 ANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYI 141 (325)
Q Consensus 107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~~~-~~G~I~i 141 (325)
+|++++|+||||||||||+++|++++++ ..|.|..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 6899999999999999999999998874 4566544
No 181
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.71 E-value=2e-09 Score=93.32 Aligned_cols=71 Identities=24% Similarity=0.360 Sum_probs=54.7
Q ss_pred EEeeCCcEEEEEcCCCChHHHHHHHHHcCCC-------------CCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCcc
Q 020527 103 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-------------PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ 169 (325)
Q Consensus 103 l~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~-------------~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~ 169 (325)
+...+|++++|+||||||||||++.|++.++ |..|+ ++|.+..-.+...+++.+ .|+..++.
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle~ 88 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLEF 88 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEEE
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhhh
Confidence 3445899999999999999999999999876 67787 688776656666666554 56666777
Q ss_pred ccHHHHHhcC
Q 020527 170 MDIKSNIMYG 179 (325)
Q Consensus 170 ~tv~enl~~~ 179 (325)
.++.+| .||
T Consensus 89 ~~~~~n-~YG 97 (197)
T 3ney_A 89 GSYQGN-MFG 97 (197)
T ss_dssp EEETTE-EEE
T ss_pred hhhhce-ecc
Confidence 888888 466
No 182
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.70 E-value=5.3e-10 Score=96.64 Aligned_cols=61 Identities=33% Similarity=0.428 Sum_probs=46.8
Q ss_pred EEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeE--EECCEeCC
Q 020527 83 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI--YIDGFPLT 147 (325)
Q Consensus 83 ~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I--~i~g~~i~ 147 (325)
+|+++.++. ..+.+..++..++|++++|+|||||||||++++|++.+. ..|.+ +++|.++.
T Consensus 3 ~~~~~~~~~---~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 3 TNIKWHECS---VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp -------CC---CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CCCcccccc---cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 456666543 357888899899999999999999999999999999988 78988 88876653
No 183
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.70 E-value=7.9e-09 Score=97.90 Aligned_cols=146 Identities=17% Similarity=0.239 Sum_probs=81.0
Q ss_pred CCcE-EEEEcCCCChHHHHHHHHHcCCC-----------CCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-c--cc
Q 020527 107 ANEV-VAIVGLSGSGKSTFVNLLLRLYE-----------PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-Q--MD 171 (325)
Q Consensus 107 ~Ge~-~~iiG~nGsGKSTLl~~l~gl~~-----------~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~--~t 171 (325)
.|-. ++|+|++|||||||++.|+|... |..|.|.++|.++. +....|++.+.|.-. . .+
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~ 250 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFV 250 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHH
Confidence 3444 99999999999999999999876 56799999987652 123456666544211 1 11
Q ss_pred HHHHH------hcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccc---cC-CCCCChHHHHHHHHH----HHH-cCCC
Q 020527 172 IKSNI------MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETL---VD-DDLLSGGQKQRIAIA----RAI-LRDP 236 (325)
Q Consensus 172 v~enl------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~LSgGq~QRv~iA----ral-~~~p 236 (325)
..+.+ .+...............+ ...+.+..+....... .+ ...+|+|++||+.++ +++ ..+|
T Consensus 251 tl~~~~~aD~il~VvD~s~~~~~~~~~~~--~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~ 328 (364)
T 2qtf_A 251 TLSEAKYSDALILVIDSTFSENLLIETLQ--SSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIF 328 (364)
T ss_dssp HHHGGGGSSEEEEEEETTSCHHHHHHHHH--HHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEE
T ss_pred HHHHHHhCCEEEEEEECCCCcchHHHHHH--HHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 12222 111110111100111111 1122232221110000 01 134788888988877 666 5455
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhh
Q 020527 237 AILLLDEATSALDSESEHYVKGVLHALR 264 (325)
Q Consensus 237 ~llllDEPts~LD~~~~~~i~~~l~~l~ 264 (325)
++ +|+|++|......+++.|.++.
T Consensus 329 ~~----~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 329 DV----IPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp EE----EECBTTTTBSHHHHHHHHHHHH
T ss_pred cE----EEEECCCCcCHHHHHHHHHHHh
Confidence 55 7999999999999998887754
No 184
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.58 E-value=2.2e-08 Score=86.26 Aligned_cols=45 Identities=20% Similarity=0.186 Sum_probs=24.9
Q ss_pred ECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527 88 HYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 88 ~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
+|+..+...+++|+||++++|++++|+|++||||||+.+.|++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 343333457999999999999999999999999999999999765
No 185
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.55 E-value=1.5e-08 Score=87.56 Aligned_cols=70 Identities=20% Similarity=0.196 Sum_probs=42.8
Q ss_pred CChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHH---HhcCEEEEEeC
Q 020527 218 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI---KAVDRIVVIDD 294 (325)
Q Consensus 218 LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~---~~~d~v~~l~~ 294 (325)
.|.|+.+|..+++.+..+|+.+..+ .+.++|.....+.+.+... .+.++|+.+|.+... ..||.+++++.
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-----~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-----TAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-----CSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-----CCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 3688999999999888887644332 3455666665555544432 244788888987654 35899999864
No 186
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.53 E-value=1.4e-07 Score=88.36 Aligned_cols=129 Identities=12% Similarity=0.126 Sum_probs=80.8
Q ss_pred ceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHH
Q 020527 97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI 176 (325)
Q Consensus 97 iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl 176 (325)
-|+.+.--+.+|+.+.|.|++|+|||||+.-++.-.....+. +.|+.= .++..+-.
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~-------------------Vl~fSl-----Ems~~ql~ 90 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRG-------------------VAVFSL-----EMSAEQLA 90 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCE-------------------EEEEES-----SSCHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCe-------------------EEEEeC-----CCCHHHHH
Confidence 455555468999999999999999999998887643322222 333221 12221111
Q ss_pred hcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHH
Q 020527 177 MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 256 (325)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i 256 (325)
.++........+..+.. ..||.+++||+..|...+.+++++|.|+|...+| .+
T Consensus 91 ----------~Rlls~~~~v~~~~l~~------------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~-----~i 143 (338)
T 4a1f_A 91 ----------LRALSDLTSINMHDLES------------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE-----QI 143 (338)
T ss_dssp ----------HHHHHHHHCCCHHHHHH------------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH-----HH
T ss_pred ----------HHHHHHhhCCCHHHHhc------------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH-----HH
Confidence 01111111222223222 2489999999999999999999999999875533 45
Q ss_pred HHHHHHhhccCCC-CeEEEEEec
Q 020527 257 KGVLHALRNDCKT-KRTVIVIAH 278 (325)
Q Consensus 257 ~~~l~~l~~~~~~-g~tvi~vtH 278 (325)
...++++.++ . |..+|+|-|
T Consensus 144 ~~~ir~l~~~--~gg~~lIVIDy 164 (338)
T 4a1f_A 144 RLQLRKLKSQ--HKELGIAFIDY 164 (338)
T ss_dssp HHHHHHHHHH--CTTEEEEEEEE
T ss_pred HHHHHHHHHh--cCCCCEEEEec
Confidence 5566666543 3 678888854
No 187
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.53 E-value=7.4e-08 Score=99.71 Aligned_cols=68 Identities=16% Similarity=0.168 Sum_probs=52.4
Q ss_pred CCChHHHHHHHHHHHHcCCCCEEEEeCCCC-CCCHHHHHHHHHHHHHhhccCCCCeEEEE-EecCchHHH-hcC
Q 020527 217 LLSGGQKQRIAIARAILRDPAILLLDEATS-ALDSESEHYVKGVLHALRNDCKTKRTVIV-IAHRLSTIK-AVD 287 (325)
Q Consensus 217 ~LSgGq~QRv~iAral~~~p~llllDEPts-~LD~~~~~~i~~~l~~l~~~~~~g~tvi~-vtH~~~~~~-~~d 287 (325)
-+|.|+.+|..++++++.+++++|+|||.. +||......+++.+.... ...+++++ +||+.+.+. .++
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~---~~~~iIl~SAT~~~~~l~~~~~ 260 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR---PDLKIIIMSATLDAEKFQRYFN 260 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC---TTCEEEEEESCSCCHHHHHHTT
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhC---CCceEEEEeccccHHHHHHHhc
Confidence 379999999999999999999999999997 999876655555554443 23467777 499988764 354
No 188
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.48 E-value=2e-07 Score=87.75 Aligned_cols=61 Identities=16% Similarity=0.121 Sum_probs=47.5
Q ss_pred CCCChHHHHHHHHHHHHcCCCCEEEEe-CCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEe--cCch
Q 020527 216 DLLSGGQKQRIAIARAILRDPAILLLD-EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIA--HRLS 281 (325)
Q Consensus 216 ~~LSgGq~QRv~iAral~~~p~llllD-EPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vt--H~~~ 281 (325)
..+|+|++|++. +.+...++-++++| +|++++|......+++.+.... .++.+|+|. ||+.
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~----~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF----KDLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT----TTSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc----CCCCEEEEEECcccC
Confidence 357999999886 66666778899999 9999999988877777666553 256788888 8874
No 189
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.45 E-value=1.8e-08 Score=84.74 Aligned_cols=38 Identities=26% Similarity=0.442 Sum_probs=33.5
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCC
Q 020527 106 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT 147 (325)
Q Consensus 106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~ 147 (325)
.+|++++|+|+|||||||++++|++.+ |.+.+++.++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence 468999999999999999999999875 88999887654
No 190
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.41 E-value=5.8e-08 Score=83.86 Aligned_cols=45 Identities=24% Similarity=0.214 Sum_probs=39.1
Q ss_pred eeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCC
Q 020527 105 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL 149 (325)
Q Consensus 105 i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~ 149 (325)
.++|++++|+|+||||||||+++|++++++..|.|.+.+.+....
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~ 63 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIV 63 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccC
Confidence 567999999999999999999999999998899998876665433
No 191
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.41 E-value=7.2e-08 Score=85.11 Aligned_cols=62 Identities=23% Similarity=0.158 Sum_probs=47.5
Q ss_pred EEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCC------CHHH----HhcceEEEccCCcCc
Q 020527 103 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL------DIRW----LREKIGFVGQEPQLL 168 (325)
Q Consensus 103 l~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~------~~~~----~r~~i~~v~Q~~~l~ 168 (325)
.+.++|++++|.|+||||||||+++|+|+ .|+|.+.+.+.... .... .++.+++++|.+.++
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~ 86 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTL 86 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHH
Confidence 35588999999999999999999999997 78999998765321 1111 135688889887654
No 192
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.39 E-value=2.2e-06 Score=80.48 Aligned_cols=49 Identities=10% Similarity=0.078 Sum_probs=35.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHH
Q 020527 234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 283 (325)
Q Consensus 234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~ 283 (325)
.+|.++++||+... |+.....+.+.+.++......+.++|++||+.+..
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 45889999999876 88877777777655532101367899999988543
No 193
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.30 E-value=4.2e-07 Score=78.43 Aligned_cols=45 Identities=18% Similarity=0.235 Sum_probs=38.1
Q ss_pred EEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccc
Q 020527 103 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQM 170 (325)
Q Consensus 103 l~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ 170 (325)
-++++|++++|+|++||||||+++.|++.++ .+.+++|++.+++.
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~ 60 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE 60 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH
Confidence 3678899999999999999999999999874 37788888776643
No 194
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.29 E-value=3.8e-07 Score=79.20 Aligned_cols=29 Identities=28% Similarity=0.382 Sum_probs=27.5
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHcCCCC
Q 020527 106 EANEVVAIVGLSGSGKSTFVNLLLRLYEP 134 (325)
Q Consensus 106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~ 134 (325)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 57999999999999999999999999986
No 195
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.28 E-value=2e-07 Score=92.83 Aligned_cols=61 Identities=30% Similarity=0.343 Sum_probs=47.0
Q ss_pred EeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCC-eEE-ECCEeCCC-------CCHH---HHhcceEEEccC
Q 020527 104 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-QIY-IDGFPLTD-------LDIR---WLREKIGFVGQE 164 (325)
Q Consensus 104 ~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G-~I~-i~g~~i~~-------~~~~---~~r~~i~~v~Q~ 164 (325)
.+++|++++|+|+||||||||+++|++.+.|++| ++. ++|.++.. ++.. ..++++++++|+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~ 437 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASE 437 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999987 785 88866521 1211 233457777775
No 196
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.26 E-value=8.7e-08 Score=89.10 Aligned_cols=44 Identities=23% Similarity=0.358 Sum_probs=36.2
Q ss_pred CceeeeeEEeeCCc------EEEEEcCCCChHHHHHHHHHcCCC--CCCCeE
Q 020527 96 PILNHVCLTIEANE------VVAIVGLSGSGKSTFVNLLLRLYE--PSDGQI 139 (325)
Q Consensus 96 ~iL~~isl~i~~Ge------~~~iiG~nGsGKSTLl~~l~gl~~--~~~G~I 139 (325)
..|++++..+.+++ ++||+||||||||||+++|.+++. |++|.+
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v 125 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNV 125 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCE
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeE
Confidence 46777777777766 999999999999999999999987 345543
No 197
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.24 E-value=5.5e-07 Score=84.45 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=25.6
Q ss_pred EeeCCcEEEEEcCCCChHHHHHHHHHcC
Q 020527 104 TIEANEVVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 104 ~i~~Ge~~~iiG~nGsGKSTLl~~l~gl 131 (325)
-+++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999988874
No 198
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.21 E-value=4.2e-07 Score=84.48 Aligned_cols=28 Identities=29% Similarity=0.354 Sum_probs=25.3
Q ss_pred EeeCCcEEEEEcCCCChHHHHHHHHHcC
Q 020527 104 TIEANEVVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 104 ~i~~Ge~~~iiG~nGsGKSTLl~~l~gl 131 (325)
-+++|+++.|.||+|||||||+..++.-
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5799999999999999999999888754
No 199
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.18 E-value=2.1e-07 Score=92.68 Aligned_cols=60 Identities=10% Similarity=0.208 Sum_probs=47.7
Q ss_pred EEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEe
Q 020527 82 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 145 (325)
Q Consensus 82 ~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~ 145 (325)
++++.+.|.. ..++.++++++ +|+.++|+||||+|||||+++|++.+.+..|+|.++|..
T Consensus 86 ~~~vk~~i~~---~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~ 145 (543)
T 3m6a_A 86 LEKVKERILE---YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVR 145 (543)
T ss_dssp CHHHHHHHHH---HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--
T ss_pred HHHHHHHHHH---HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccc
Confidence 3444444432 24778888888 799999999999999999999999999999999887743
No 200
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.18 E-value=6.4e-07 Score=82.43 Aligned_cols=145 Identities=19% Similarity=0.173 Sum_probs=76.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEEC-CEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCH
Q 020527 108 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID-GFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKN 186 (325)
Q Consensus 108 Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~-g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~ 186 (325)
+.+++|+|++|+|||||++.|.|.. +.+. +.+-. ...+..++++++..-+ ++.|. -| ...
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~~t-----Tr~~~~gi~~~~~~~i--~~iDT--pG----~~~ 68 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKAQT-----TRHRIVGIHTEGAYQA--IYVDT--PG----LHM 68 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCSSC-----CSSCEEEEEEETTEEE--EEESS--SS----CCH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCCCc-----ceeeEEEEEEECCeeE--EEEEC--cC----CCc
Confidence 3489999999999999999999963 2221 11111 1134467777764311 11110 01 110
Q ss_pred HHHHHHHHHcCHHHHHHhCCC---Cccc---ccCCCCCChHHHHHHHHHHHHc--CCCCEEEEeCCCCCCCHHH-HHHHH
Q 020527 187 EDIEWAAKQAYVHEFILSLPC---GYET---LVDDDLLSGGQKQRIAIARAIL--RDPAILLLDEATSALDSES-EHYVK 257 (325)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~LSgGq~QRv~iAral~--~~p~llllDEPts~LD~~~-~~~i~ 257 (325)
.. ...+.. .+...... ..+. ......+|+|++ .+++++. ..|.++++ +.+|... ...+.
T Consensus 69 ~~-~~~l~~----~~~~~~~~~l~~~D~vl~Vvd~~~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~ 136 (301)
T 1ega_A 69 EE-KRAINR----LMNKAASSSIGDVELVIFVVEGTRWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLL 136 (301)
T ss_dssp HH-HHHHHH----HHTCCTTSCCCCEEEEEEEEETTCCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHH
T ss_pred cc-hhhHHH----HHHHHHHHHHhcCCEEEEEEeCCCCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHH
Confidence 00 011110 01000000 0010 011223898886 5566666 78899998 7899876 66677
Q ss_pred HHHHHhhccCCCCeEEEEEecCchHH
Q 020527 258 GVLHALRNDCKTKRTVIVIAHRLSTI 283 (325)
Q Consensus 258 ~~l~~l~~~~~~g~tvi~vtH~~~~~ 283 (325)
+.+.++.+.......+.+++|+-.-+
T Consensus 137 ~~l~~l~~~~~~~~~i~iSA~~g~~v 162 (301)
T 1ega_A 137 PHLQFLASQMNFLDIVPISAETGLNV 162 (301)
T ss_dssp HHHHHHHTTSCCSEEEECCTTTTTTH
T ss_pred HHHHHHHHhcCcCceEEEECCCCCCH
Confidence 88888765321123566677765443
No 201
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.14 E-value=2.1e-06 Score=80.12 Aligned_cols=31 Identities=29% Similarity=0.453 Sum_probs=26.6
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHcCCCCCC
Q 020527 106 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 136 (325)
Q Consensus 106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~ 136 (325)
..+..+.|.||+|+|||||++.+++..++..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~ 73 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKF 73 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 4577899999999999999999998776543
No 202
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.11 E-value=3.4e-07 Score=86.68 Aligned_cols=53 Identities=13% Similarity=0.148 Sum_probs=47.8
Q ss_pred ccEEEEEEEEECCCCCCCCcee--------------eeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527 78 GHVQFVNISFHYPSRPTVPILN--------------HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 78 ~~i~~~~v~~~y~~~~~~~iL~--------------~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
+.+.++|+++.|+.. +..|+ |+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 132 ~ri~Fe~ltp~yP~e--r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 132 NKILFENLTPLHANS--RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TSCCTTTSCEESCCS--BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCceeccccccCCCC--ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 358899999999864 56888 899999999999999999999999999999875
No 203
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.10 E-value=2.8e-07 Score=95.86 Aligned_cols=31 Identities=13% Similarity=0.265 Sum_probs=28.4
Q ss_pred EEeeCCcEEEEEcCCCChHHHHHHHHHcCCC
Q 020527 103 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYE 133 (325)
Q Consensus 103 l~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~ 133 (325)
|.+++|+.++|+||||||||||+++|++.+.
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 3678999999999999999999999999864
No 204
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.10 E-value=2.3e-05 Score=71.10 Aligned_cols=75 Identities=19% Similarity=0.246 Sum_probs=46.5
Q ss_pred ChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHhhccC-CCCeEEEEEecCchH-----
Q 020527 219 SGGQKQRIAIARAILRDPAILLLDEATSALDSE----------SEHYVKGVLHALRNDC-KTKRTVIVIAHRLST----- 282 (325)
Q Consensus 219 SgGq~QRv~iAral~~~p~llllDEPts~LD~~----------~~~~i~~~l~~l~~~~-~~g~tvi~vtH~~~~----- 282 (325)
+++++.|..++++...+|.+|++||+.+-++.. ....++..+....... ..+..+|.+|++++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 467778888888888999999999998776532 2223444444432110 124567778887542
Q ss_pred HHhcCEEEEEe
Q 020527 283 IKAVDRIVVID 293 (325)
Q Consensus 283 ~~~~d~v~~l~ 293 (325)
..++++++.+.
T Consensus 177 ~~R~~~~i~~~ 187 (297)
T 3b9p_A 177 LRRFTKRVYVS 187 (297)
T ss_dssp HHHCCEEEECC
T ss_pred HhhCCeEEEeC
Confidence 23577766554
No 205
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.09 E-value=3.4e-07 Score=85.73 Aligned_cols=51 Identities=18% Similarity=0.216 Sum_probs=45.9
Q ss_pred CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeC
Q 020527 96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL 146 (325)
Q Consensus 96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i 146 (325)
.+++++++.+.+|.+++|+|++|||||||++.|++.+.+..|+|.+-+.+.
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 478899999999999999999999999999999999988888888866655
No 206
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.08 E-value=7.3e-06 Score=79.07 Aligned_cols=40 Identities=23% Similarity=0.336 Sum_probs=35.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeC
Q 020527 107 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL 146 (325)
Q Consensus 107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i 146 (325)
++.+++++||+||||||++..|++.+.+..++|.+-+.|.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 5789999999999999999999999998888898866664
No 207
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.08 E-value=9.2e-06 Score=75.10 Aligned_cols=130 Identities=14% Similarity=0.212 Sum_probs=76.4
Q ss_pred CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHH
Q 020527 96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSN 175 (325)
Q Consensus 96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~en 175 (325)
+.|+.+.--+++|+++.|.|++|+|||||+..++.-.-. .| ..+.|+.-+ ++..+-
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g------------------~~vl~~slE-----~s~~~l 111 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND------------------DVVNLHSLE-----MGKKEN 111 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT------------------CEEEEEESS-----SCHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC------------------CeEEEEECC-----CCHHHH
Confidence 356776656899999999999999999999877742210 11 124443321 222111
Q ss_pred HhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCC--CChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHH
Q 020527 176 IMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 253 (325)
Q Consensus 176 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~ 253 (325)
. .++........+..+.. .. ||.++++|+..|...+.++++++.|+|...+
T Consensus 112 ~----------~R~~~~~~~i~~~~l~~------------~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~----- 164 (315)
T 3bh0_A 112 I----------KRLIVTAGSINAQKIKA------------ARRDFASEDWGKLSMAIGEISNSNINIFDKAGQSV----- 164 (315)
T ss_dssp H----------HHHHHHHTTCCHHHHHS------------CHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBH-----
T ss_pred H----------HHHHHHHcCCCHHHHhc------------CCCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCH-----
Confidence 1 00000111111222210 12 7899999999999888889999999886442
Q ss_pred HHHHHHHHHhhccCCCCeE--EEEEec
Q 020527 254 HYVKGVLHALRNDCKTKRT--VIVIAH 278 (325)
Q Consensus 254 ~~i~~~l~~l~~~~~~g~t--vi~vtH 278 (325)
..+.+.++++.++ .+.. +|+|-|
T Consensus 165 ~~i~~~i~~l~~~--~~~~~~lVVID~ 189 (315)
T 3bh0_A 165 NYIWSKTRQTKRK--NPGKRVIVMIDY 189 (315)
T ss_dssp HHHHHHHHHHHHT--SSSCCEEEEEEC
T ss_pred HHHHHHHHHHHHh--cCCCCeEEEEeC
Confidence 2345555655443 3555 777754
No 208
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.06 E-value=1.5e-06 Score=72.47 Aligned_cols=33 Identities=27% Similarity=0.360 Sum_probs=27.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECC
Q 020527 107 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 143 (325)
Q Consensus 107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g 143 (325)
.|++++|+|||||||||++++|++.+.+ +++++
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4788999999999999999999998753 45553
No 209
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.05 E-value=5.5e-06 Score=80.22 Aligned_cols=44 Identities=14% Similarity=0.313 Sum_probs=35.5
Q ss_pred CCCCEEEEeCCCCCCCH-HHHHHHHHHHHHhhccCCCCeEEEEEecCc
Q 020527 234 RDPAILLLDEATSALDS-ESEHYVKGVLHALRNDCKTKRTVIVIAHRL 280 (325)
Q Consensus 234 ~~p~llllDEPts~LD~-~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~ 280 (325)
.+|++|++||+..-.+. .++..++..+..+.+ .|+.+|++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~---~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHD---SGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT---TTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHH---CCCeEEEEECCC
Confidence 48999999999877664 677778888888764 477899999974
No 210
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.04 E-value=2.3e-06 Score=82.75 Aligned_cols=67 Identities=31% Similarity=0.394 Sum_probs=40.4
Q ss_pred EEEEEcCCCChHHHHHHHHHcCCC------------CCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCcc-ccHHHHH
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLYE------------PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNI 176 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~~------------~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~tv~enl 176 (325)
.++|+|+||+|||||++.|+|... +.+|.+.++|.++.-++..-.++..++.+|....|. .+..+++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i 261 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI 261 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence 799999999999999999999854 678999999987643333223444455556554442 3444444
No 211
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.01 E-value=9.4e-07 Score=74.43 Aligned_cols=40 Identities=30% Similarity=0.314 Sum_probs=32.8
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHcCCCCCCC--eEEECCEeC
Q 020527 106 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG--QIYIDGFPL 146 (325)
Q Consensus 106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G--~I~i~g~~i 146 (325)
++|++++|+|++||||||+.++|++.+++ .| .+.+++..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 46899999999999999999999998866 56 666665443
No 212
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.97 E-value=1.8e-06 Score=81.19 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=36.5
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCC
Q 020527 106 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT 147 (325)
Q Consensus 106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~ 147 (325)
+++.+++|+|++|||||||++.|+|.+.+..|+|.+.+.+..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence 457899999999999999999999999888999988776553
No 213
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.96 E-value=4.4e-06 Score=68.75 Aligned_cols=32 Identities=25% Similarity=0.504 Sum_probs=26.2
Q ss_pred eeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHc
Q 020527 98 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR 130 (325)
Q Consensus 98 L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~g 130 (325)
+++.++++.+| +.+|+|||||||||++.+|.-
T Consensus 14 ~~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred CcceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 34556667665 899999999999999999873
No 214
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.93 E-value=6.8e-05 Score=65.90 Aligned_cols=28 Identities=32% Similarity=0.389 Sum_probs=24.0
Q ss_pred EEEEEcCCCChHHHHHHHHHcCCCCCCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLYEPSDG 137 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~~~~~G 137 (325)
.++|+|++|+|||||++.|+|...+.++
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 5899999999999999999997766555
No 215
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.92 E-value=4.5e-06 Score=73.71 Aligned_cols=45 Identities=22% Similarity=0.298 Sum_probs=32.5
Q ss_pred ceeeeeEEee---CCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEEC
Q 020527 97 ILNHVCLTIE---ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 142 (325)
Q Consensus 97 iL~~isl~i~---~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~ 142 (325)
-|.++|+.+. +|.+++|.|++||||||+++.|+..+.+ .+.+...
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 4666666665 8999999999999999999999999887 6666554
No 216
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.85 E-value=2.4e-05 Score=71.59 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=26.2
Q ss_pred EeeCCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527 104 TIEANEVVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 104 ~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.++++..+.|.||+|+|||||++++++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 46788899999999999999999999865
No 217
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.84 E-value=2.6e-06 Score=73.78 Aligned_cols=43 Identities=28% Similarity=0.247 Sum_probs=37.2
Q ss_pred EEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCC--eEEECCEe
Q 020527 103 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG--QIYIDGFP 145 (325)
Q Consensus 103 l~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G--~I~i~g~~ 145 (325)
+.+++|.+++|+|++||||||+.+.|++.+.|..| .+.+++..
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 44678999999999999999999999999987888 78887543
No 218
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.80 E-value=5.5e-06 Score=79.78 Aligned_cols=60 Identities=18% Similarity=0.196 Sum_probs=50.2
Q ss_pred EEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCC
Q 020527 81 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT 147 (325)
Q Consensus 81 ~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~ 147 (325)
..+++++.|+.. . ++++|+ +|++++++|+|||||||++..|++.+.+..|+|.+.+.|+.
T Consensus 78 v~~~L~~~~~~~---~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 78 VYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (425)
T ss_dssp HHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSS
T ss_pred HHHHHHHHhCCC---c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecccc
Confidence 345677778642 1 678887 89999999999999999999999999999999999887754
No 219
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.78 E-value=4.6e-06 Score=71.32 Aligned_cols=56 Identities=21% Similarity=0.444 Sum_probs=38.2
Q ss_pred EECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcC--------CCCCCCeEEECCEe
Q 020527 87 FHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--------YEPSDGQIYIDGFP 145 (325)
Q Consensus 87 ~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl--------~~~~~G~I~i~g~~ 145 (325)
++|++- ..+++++|+..+++ .++++|++|+|||||++.+.+- ..++.+.+.++|..
T Consensus 7 ~~~~~~--~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 70 (198)
T 1f6b_A 7 WIYSGF--SSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT 70 (198)
T ss_dssp --------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEE
T ss_pred HHHHHH--HHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEE
Confidence 456543 35899999998887 5789999999999999999862 22344566666543
No 220
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.76 E-value=1.7e-05 Score=67.17 Aligned_cols=34 Identities=24% Similarity=0.416 Sum_probs=20.6
Q ss_pred CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHc
Q 020527 96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR 130 (325)
Q Consensus 96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~g 130 (325)
.+++++|++.++. .++++|++|+|||||++.+.+
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 3789999988877 678999999999999999997
No 221
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.75 E-value=1.8e-05 Score=66.01 Aligned_cols=27 Identities=30% Similarity=0.332 Sum_probs=23.4
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527 106 EANEVVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
++|..++|+|++|+|||||++.+++..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999999864
No 222
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.73 E-value=4.8e-05 Score=70.05 Aligned_cols=43 Identities=16% Similarity=0.274 Sum_probs=30.2
Q ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHHHHHhhccCCCCeEEEEEecC
Q 020527 234 RDPAILLLDEATS-ALDSESEHYVKGVLHALRNDCKTKRTVIVIAHR 279 (325)
Q Consensus 234 ~~p~llllDEPts-~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~ 279 (325)
.+|++|++||+-. .-+...+..+...+..+.+ .+..+|++++.
T Consensus 97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~---~~~~iii~~~~ 140 (324)
T 1l8q_A 97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL---LEKQIILASDR 140 (324)
T ss_dssp HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH---TTCEEEEEESS
T ss_pred cCCCEEEEcCcccccCChHHHHHHHHHHHHHHH---CCCeEEEEecC
Confidence 4699999999865 2344677788888887654 35566666653
No 223
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.71 E-value=3.9e-05 Score=67.51 Aligned_cols=128 Identities=17% Similarity=0.157 Sum_probs=67.5
Q ss_pred eeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHHHHHhcCCCCC
Q 020527 105 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKD 183 (325)
Q Consensus 105 i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~enl~~~~~~~ 183 (325)
+.+|+.+++.||+||||||++.++........|. ...++++++.|... ..++.+++.......
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 3568999999999999999988764321111110 13467788877654 457777775321111
Q ss_pred CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCC-CCCHHHHHHHHHHH
Q 020527 184 VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATS-ALDSESEHYVKGVL 260 (325)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts-~LD~~~~~~i~~~l 260 (325)
.. ...+.....+.........+ ---+.|...+.. +..+.+-+++++||+-. ++|........+.+
T Consensus 137 ~~--------~~~g~~~~~~~~~~~~~~~I--vv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i 202 (235)
T 3llm_A 137 PG--------KSCGYSVRFESILPRPHASI--MFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDV 202 (235)
T ss_dssp TT--------SSEEEEETTEEECCCSSSEE--EEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHH
T ss_pred cC--------ceEEEeechhhccCCCCCeE--EEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHH
Confidence 00 00000000000000000000 003456665553 34689999999999976 57776653333333
No 224
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.69 E-value=4.6e-06 Score=76.63 Aligned_cols=61 Identities=20% Similarity=0.248 Sum_probs=49.8
Q ss_pred EEEEEEEECCCCCCCCceee-eeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCC
Q 020527 81 QFVNISFHYPSRPTVPILNH-VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT 147 (325)
Q Consensus 81 ~~~~v~~~y~~~~~~~iL~~-isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~ 147 (325)
..+++.+.|++. . ++ ++++.+ |++++++|+||+||||++..|++.+.+..|+|.+.+.+..
T Consensus 76 ~~~~l~~~~~~~---~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 76 VYDELSNLFGGD---K--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp HHHHHHHHTTCS---C--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred HHHHHHHHhccc---c--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 455666677643 1 56 788876 9999999999999999999999999988899999877754
No 225
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.67 E-value=0.00032 Score=65.89 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=24.9
Q ss_pred eeCCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527 105 IEANEVVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 105 i~~Ge~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
+++|+++.|.|++|+|||||...++.-.
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999997777543
No 226
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.66 E-value=2.5e-05 Score=67.50 Aligned_cols=31 Identities=26% Similarity=0.542 Sum_probs=25.5
Q ss_pred eeeeeEEeeCCcEEEEEcCCCChHHHHHHHHH
Q 020527 98 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 129 (325)
Q Consensus 98 L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~ 129 (325)
+.+.++++.+| +.+|+|||||||||++.+|.
T Consensus 14 ~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ccceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 34556677765 99999999999999999886
No 227
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.64 E-value=0.00012 Score=65.73 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=24.1
Q ss_pred eeCCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527 105 IEANEVVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 105 i~~Ge~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
+.++..+.|.||+|+|||||++.++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3566779999999999999999998754
No 228
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.63 E-value=1.4e-06 Score=81.24 Aligned_cols=50 Identities=14% Similarity=0.201 Sum_probs=42.2
Q ss_pred CceeeeeEEeeCCcE--EEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEe
Q 020527 96 PILNHVCLTIEANEV--VAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 145 (325)
Q Consensus 96 ~iL~~isl~i~~Ge~--~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~ 145 (325)
.+++.++..++.|++ +.+.||+|+||||+++++++.+.+..+.+.+.+.+
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~ 83 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN 83 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEc
Confidence 589999999999998 99999999999999999999987776654444433
No 229
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.63 E-value=1.7e-05 Score=66.95 Aligned_cols=36 Identities=36% Similarity=0.461 Sum_probs=31.5
Q ss_pred eeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEE
Q 020527 105 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY 140 (325)
Q Consensus 105 i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~ 140 (325)
..+|.+++|+|++||||||+.+.|+..+.+..+.+.
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~ 45 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVE 45 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 457899999999999999999999998887777664
No 230
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.61 E-value=2.7e-05 Score=65.84 Aligned_cols=32 Identities=16% Similarity=0.285 Sum_probs=26.5
Q ss_pred eeeEEeeCCcEEEEEcCCCChHHHHHHHHHcC
Q 020527 100 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 100 ~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl 131 (325)
++|++..+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888899999999999999999999999875
No 231
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.58 E-value=2.9e-05 Score=67.38 Aligned_cols=27 Identities=11% Similarity=0.180 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCCC
Q 020527 107 ANEVVAIVGLSGSGKSTFVNLLLRLYE 133 (325)
Q Consensus 107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~~ 133 (325)
++..+.|.||+|+|||||++.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999987554
No 232
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.55 E-value=2.9e-05 Score=66.79 Aligned_cols=30 Identities=23% Similarity=0.418 Sum_probs=26.3
Q ss_pred EeeCCcEEEEEcCCCChHHHHHHHHHcCCC
Q 020527 104 TIEANEVVAIVGLSGSGKSTFVNLLLRLYE 133 (325)
Q Consensus 104 ~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~ 133 (325)
...+|.+++|+||||||||||.+.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 357899999999999999999999998664
No 233
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.52 E-value=7.9e-05 Score=61.33 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=21.8
Q ss_pred EEEEEcCCCChHHHHHHHHHcCCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLYE 133 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~~ 133 (325)
.++|+|++|+|||||++.++|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999998654
No 234
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.51 E-value=5e-06 Score=78.43 Aligned_cols=56 Identities=27% Similarity=0.278 Sum_probs=36.5
Q ss_pred cEEEEEEEEECCCCCCCCceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECC
Q 020527 79 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 143 (325)
Q Consensus 79 ~i~~~~v~~~y~~~~~~~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g 143 (325)
.+.++|++..|+.+ .++++++|+| +|+|+||+|||||++.|.+...+..+.+..++
T Consensus 17 ~v~~~~l~~~~~~k---~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~ 72 (361)
T 2qag_A 17 YVGFANLPNQVHRK---SVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA 72 (361)
T ss_dssp ----CCHHHHHHTH---HHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred eEEeccchHHhCCe---eecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence 58888998888643 5889999877 99999999999999999987666666554444
No 235
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.50 E-value=4.4e-05 Score=65.24 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
+++|+|+|||||||+.+.|+++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHHHC
Confidence 6899999999999999999993
No 236
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.50 E-value=4.4e-05 Score=72.70 Aligned_cols=41 Identities=29% Similarity=0.490 Sum_probs=33.8
Q ss_pred EeeCCcEEEEEcCCCChHHHHHHHHHcC-----------CCCCCCeEEECCE
Q 020527 104 TIEANEVVAIVGLSGSGKSTFVNLLLRL-----------YEPSDGQIYIDGF 144 (325)
Q Consensus 104 ~i~~Ge~~~iiG~nGsGKSTLl~~l~gl-----------~~~~~G~I~i~g~ 144 (325)
.+..|..++|+|+||+|||||++.|+|. ..|..|.+.+.+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 3567889999999999999999999998 6678888887663
No 237
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.50 E-value=5.3e-05 Score=63.33 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++|+|++|+|||||++.+++-
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 238
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.49 E-value=0.0004 Score=67.03 Aligned_cols=176 Identities=16% Similarity=0.176 Sum_probs=91.6
Q ss_pred CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCC-eEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHH
Q 020527 96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-QIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 174 (325)
Q Consensus 96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G-~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~e 174 (325)
+.|+.+.--+++|+++.|.|++|+|||||+.-++.-.....| .|.+... +.+..++..++- .+...+-...+
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl---E~~~~~l~~R~~--~~~~~i~~~~l-- 260 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL---EMPAAQLTLRMM--CSEARIDMNRV-- 260 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES---SSCHHHHHHHHH--HHHTTCCTTTC--
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC---CCCHHHHHHHHH--HHHcCCCHHHH--
Confidence 456777655899999999999999999999888765433223 3333211 123333322210 00000000000
Q ss_pred HHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc--CCCCEEEEeCCCCCCCH--
Q 020527 175 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL--RDPAILLLDEATSALDS-- 250 (325)
Q Consensus 175 nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~--~~p~llllDEPts~LD~-- 250 (325)
.-+ ....+........ .+.+...+.-. .....+|..+. .+.+|.+. .+|+++++|..+.-.+.
T Consensus 261 --~~g---~l~~~~~~~~~~a---~~~l~~~~l~i---~d~~~~s~~~l--~~~~~~l~~~~~~~lIvID~l~~~~~~~~ 327 (444)
T 2q6t_A 261 --RLG---QLTDRDFSRLVDV---ASRLSEAPIYI---DDTPDLTLMEV--RARARRLVSQNQVGLIIIDYLQLMSGPGS 327 (444)
T ss_dssp --CGG---GCCHHHHHHHHHH---HHHHHTSCEEE---ECCTTCBHHHH--HHHHHHHHHHSCCCEEEEECGGGCBCC--
T ss_pred --hCC---CCCHHHHHHHHHH---HHHHhcCCEEE---ECCCCCCHHHH--HHHHHHHHHHcCCCEEEEcChhhcCCCcC
Confidence 001 1122222221111 11222222111 11234676654 44556665 58999999999865433
Q ss_pred ----HH----HHHHHHHHHHhhccCCCCeEEEEEecC-------------ch------HHH-hcCEEEEEe
Q 020527 251 ----ES----EHYVKGVLHALRNDCKTKRTVIVIAHR-------------LS------TIK-AVDRIVVID 293 (325)
Q Consensus 251 ----~~----~~~i~~~l~~l~~~~~~g~tvi~vtH~-------------~~------~~~-~~d~v~~l~ 293 (325)
.+ ...+.+.|+.++++ .+++||+++|- ++ .++ .||.|++|.
T Consensus 328 ~~~~~~r~~~i~~i~~~Lk~lAke--~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~ 396 (444)
T 2q6t_A 328 GKSGENRQQEIAAISRGLKALARE--LGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIY 396 (444)
T ss_dssp -----CHHHHHHHHHHHHHHHHHH--HTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHH--hCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEe
Confidence 11 23455666776654 48899999981 11 233 389999985
No 239
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.43 E-value=2e-05 Score=73.01 Aligned_cols=43 Identities=12% Similarity=0.301 Sum_probs=32.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchH
Q 020527 235 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST 282 (325)
Q Consensus 235 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~ 282 (325)
+++++++|| ...+++.....+.+.+.+.. ....+|+++++...
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~----~~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYS----GVTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTT----TTEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcC----CCceEEEEeCchhh
Confidence 667999999 78899988888888887763 24567777776653
No 240
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.40 E-value=3.2e-05 Score=66.14 Aligned_cols=34 Identities=29% Similarity=0.505 Sum_probs=27.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEe
Q 020527 108 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 145 (325)
Q Consensus 108 Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~ 145 (325)
..+++|+|++||||||+.+.|++.+ |...+++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~ 51 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDA 51 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCc
Confidence 4689999999999999999998865 445555433
No 241
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.38 E-value=6.2e-05 Score=63.60 Aligned_cols=37 Identities=24% Similarity=0.331 Sum_probs=29.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCCCCC---CCeEEECCEe
Q 020527 109 EVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFP 145 (325)
Q Consensus 109 e~~~iiG~nGsGKSTLl~~l~gl~~~~---~G~I~i~g~~ 145 (325)
.+++|+|+||||||||++.|.+.+++. -|.|..++.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 589999999999999999999876543 3667776544
No 242
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.36 E-value=8.9e-05 Score=62.18 Aligned_cols=26 Identities=35% Similarity=0.585 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHcCCCCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLYEPS 135 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~~~~ 135 (325)
.++|+|++|+|||||++.+++...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 58999999999999999999975443
No 243
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.35 E-value=8.6e-05 Score=65.93 Aligned_cols=45 Identities=20% Similarity=0.239 Sum_probs=29.3
Q ss_pred ceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEe
Q 020527 97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 145 (325)
Q Consensus 97 iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~ 145 (325)
.++++++.+++| +.|.||+|+|||||++++++..... -+.+++.+
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~ 80 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSD 80 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCS
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHH
Confidence 455555555555 8899999999999999999876421 35555433
No 244
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.35 E-value=5.2e-05 Score=67.61 Aligned_cols=41 Identities=22% Similarity=0.380 Sum_probs=33.3
Q ss_pred EeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeC
Q 020527 104 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL 146 (325)
Q Consensus 104 ~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i 146 (325)
..+++.++.|+|++||||||+.+.|+..+. .+.+.+++..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 456788999999999999999999998764 35677777554
No 245
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.32 E-value=2.9e-05 Score=72.79 Aligned_cols=37 Identities=38% Similarity=0.445 Sum_probs=33.3
Q ss_pred CceeeeeEEeeCCcE--EEEEcCCCChHHHHHHHHHcCC
Q 020527 96 PILNHVCLTIEANEV--VAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 96 ~iL~~isl~i~~Ge~--~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.+++.+++.+++|++ ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 377888888999998 9999999999999999999864
No 246
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.30 E-value=0.00014 Score=68.55 Aligned_cols=32 Identities=31% Similarity=0.493 Sum_probs=28.2
Q ss_pred ceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHH
Q 020527 97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 129 (325)
Q Consensus 97 iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~ 129 (325)
.+++..+++.+| +.+|+|||||||||++.+|.
T Consensus 15 ~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 15 SHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp TEEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred cccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 457888888875 89999999999999999886
No 247
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.27 E-value=0.00023 Score=61.13 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=32.5
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHH
Q 020527 234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 283 (325)
Q Consensus 234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~ 283 (325)
.+|.++++||.-. +|+.....+.+.+.+. ..+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~----~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP----PEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC----CTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC----CCceEEEEEeCChHhC
Confidence 4688999999765 7887777776666543 2467888889876643
No 248
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.25 E-value=0.00012 Score=61.33 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=22.7
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHcC
Q 020527 106 EANEVVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999853
No 249
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.19 E-value=6.3e-05 Score=66.58 Aligned_cols=32 Identities=31% Similarity=0.342 Sum_probs=25.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHH---cCCCCCCCeE
Q 020527 108 NEVVAIVGLSGSGKSTFVNLLL---RLYEPSDGQI 139 (325)
Q Consensus 108 Ge~~~iiG~nGsGKSTLl~~l~---gl~~~~~G~I 139 (325)
.-+++|.||+||||||+.+.|+ |+...+.|.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~ 43 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAM 43 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcH
Confidence 4589999999999999999998 5544555555
No 250
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.19 E-value=0.00019 Score=63.07 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=27.2
Q ss_pred eeCCcEEEEEcCCCChHHHHHHHHHc---CCCCCCCeE
Q 020527 105 IEANEVVAIVGLSGSGKSTFVNLLLR---LYEPSDGQI 139 (325)
Q Consensus 105 i~~Ge~~~iiG~nGsGKSTLl~~l~g---l~~~~~G~I 139 (325)
=.+|.+++|+|++||||||+.+.|++ +..++.|.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~ 50 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAM 50 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCe
Confidence 36789999999999999999999986 333444444
No 251
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.15 E-value=0.00025 Score=59.01 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCCC
Q 020527 108 NEVVAIVGLSGSGKSTFVNLLLRLYE 133 (325)
Q Consensus 108 Ge~~~iiG~nGsGKSTLl~~l~gl~~ 133 (325)
|.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999998654
No 252
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.14 E-value=0.00023 Score=58.59 Aligned_cols=23 Identities=22% Similarity=0.150 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
No 253
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.04 E-value=0.0027 Score=59.73 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=23.8
Q ss_pred EeeCCcEEEEEcCCCChHHHHHHHHHc
Q 020527 104 TIEANEVVAIVGLSGSGKSTFVNLLLR 130 (325)
Q Consensus 104 ~i~~Ge~~~iiG~nGsGKSTLl~~l~g 130 (325)
-+++|+++.|.||+|+|||||...++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 378999999999999999999976654
No 254
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.02 E-value=0.00031 Score=65.37 Aligned_cols=28 Identities=36% Similarity=0.589 Sum_probs=24.1
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHcCCC
Q 020527 106 EANEVVAIVGLSGSGKSTFVNLLLRLYE 133 (325)
Q Consensus 106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~ 133 (325)
..+..+.|.||+|+|||||++.++....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999987653
No 255
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.01 E-value=0.00037 Score=58.35 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCC
Q 020527 108 NEVVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 108 Ge~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
|.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998744
No 256
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.00 E-value=0.00065 Score=56.95 Aligned_cols=35 Identities=43% Similarity=0.587 Sum_probs=25.6
Q ss_pred EEEEEcCCCChHHHHHHHHHc-C----CCCCCC----eEEECCE
Q 020527 110 VVAIVGLSGSGKSTFVNLLLR-L----YEPSDG----QIYIDGF 144 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~g-l----~~~~~G----~I~i~g~ 144 (325)
.++|+|++|+|||||++.+.+ - +.|+.| .+.++|.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 65 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQ 65 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCE
Confidence 589999999999999976554 3 456655 4555554
No 257
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.00 E-value=0.00027 Score=66.91 Aligned_cols=59 Identities=19% Similarity=0.390 Sum_probs=45.9
Q ss_pred CCCCEEEEeCCCCCCC---HHHHHHHHHHHHHhhccCCCCeEEEEEecCchHH-------------HhcCEEEEEeCC
Q 020527 234 RDPAILLLDEATSALD---SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-------------KAVDRIVVIDDG 295 (325)
Q Consensus 234 ~~p~llllDEPts~LD---~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~-------------~~~d~v~~l~~G 295 (325)
..|.++++||.=.-++ +.....+.+.+++.++ .|..++++||+++.+ ..|+..+++...
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk---~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~~ 335 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRK---YNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQG 335 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGG---GTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSCC
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhh---hCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCCC
Confidence 3588999999988884 6677788888888865 488999999998754 236777777654
No 258
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.00 E-value=0.00034 Score=59.28 Aligned_cols=32 Identities=38% Similarity=0.385 Sum_probs=26.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCE
Q 020527 108 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF 144 (325)
Q Consensus 108 Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~ 144 (325)
..+++|+|++||||||+.+.|+.. |-..++..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d 39 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDLD 39 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEccc
Confidence 357999999999999999999985 66666543
No 259
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.97 E-value=0.00036 Score=58.61 Aligned_cols=27 Identities=19% Similarity=0.350 Sum_probs=23.4
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527 106 EANEVVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
+++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 457789999999999999999998643
No 260
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.97 E-value=0.0001 Score=63.22 Aligned_cols=26 Identities=35% Similarity=0.627 Sum_probs=23.1
Q ss_pred EEEEEcCCCChHHHHHHHHHcCCCCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLYEPS 135 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~~~~ 135 (325)
+++|.|++||||||+++.|+..+.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999877643
No 261
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.97 E-value=0.0004 Score=59.91 Aligned_cols=24 Identities=42% Similarity=0.488 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHc
Q 020527 107 ANEVVAIVGLSGSGKSTFVNLLLR 130 (325)
Q Consensus 107 ~Ge~~~iiG~nGsGKSTLl~~l~g 130 (325)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999998
No 262
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.96 E-value=0.00065 Score=63.92 Aligned_cols=36 Identities=36% Similarity=0.508 Sum_probs=30.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHHc-----------CCCCCCCeEEECC
Q 020527 108 NEVVAIVGLSGSGKSTFVNLLLR-----------LYEPSDGQIYIDG 143 (325)
Q Consensus 108 Ge~~~iiG~nGsGKSTLl~~l~g-----------l~~~~~G~I~i~g 143 (325)
|-.++|+|.+|+|||||++.|++ -..|..|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 45789999999999999999998 3457788888766
No 263
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.95 E-value=0.0004 Score=56.89 Aligned_cols=19 Identities=58% Similarity=0.976 Sum_probs=18.2
Q ss_pred EEEEEcCCCChHHHHHHHH
Q 020527 110 VVAIVGLSGSGKSTFVNLL 128 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l 128 (325)
+++|.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 264
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.91 E-value=0.00046 Score=57.61 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++++|++|+|||||++.+.+-
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999875
No 265
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.90 E-value=0.00052 Score=57.44 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527 107 ANEVVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998644
No 266
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.90 E-value=0.0037 Score=60.37 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=27.8
Q ss_pred ceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHc
Q 020527 97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR 130 (325)
Q Consensus 97 iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~g 130 (325)
-|+.+.--+.+|+.+.|.|++|+|||||+.-++.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 4555543589999999999999999999876664
No 267
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.90 E-value=0.00044 Score=58.95 Aligned_cols=21 Identities=43% Similarity=0.642 Sum_probs=18.6
Q ss_pred EEEEcCCCChHHHHHHHHHcC
Q 020527 111 VAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 111 ~~iiG~nGsGKSTLl~~l~gl 131 (325)
+.|+||||||||||++.|..-
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999988643
No 268
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.90 E-value=0.0046 Score=57.72 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=23.2
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527 106 EANEVVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.+...+.|.||+|+|||||++.++...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 346679999999999999999998754
No 269
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.89 E-value=0.00051 Score=62.48 Aligned_cols=36 Identities=25% Similarity=0.391 Sum_probs=28.6
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECC
Q 020527 106 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 143 (325)
Q Consensus 106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g 143 (325)
..+..+.|.|||||||||+.+.|+.-++ .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 3467899999999999999999986443 35677765
No 270
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.89 E-value=0.0003 Score=58.80 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=22.9
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHcC
Q 020527 106 EANEVVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl 131 (325)
..+.++.|+|++||||||+.+.|+..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 45778999999999999999999843
No 271
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.88 E-value=0.00045 Score=61.56 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
+++|+||||||||||.+.|++-+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998754
No 272
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.88 E-value=0.00049 Score=58.24 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999844
No 273
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.83 E-value=0.00046 Score=66.86 Aligned_cols=56 Identities=14% Similarity=0.189 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeCCCC-CCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHH
Q 020527 221 GQKQRIAIARAILRDPAILLLDEATS-ALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 283 (325)
Q Consensus 221 Gq~QRv~iAral~~~p~llllDEPts-~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~ 283 (325)
.|.+....+...+.+++++|+..... ++.... ..+.+.+++ .++.+|++.+..+..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~~------~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILYR------TKKPVVLAVNKLDNT 144 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHTT------CCSCEEEEEECC---
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHHH------cCCCEEEEEECccch
Confidence 46677777888888888777765544 455443 344444432 366788888766654
No 274
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.83 E-value=0.00072 Score=57.33 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527 107 ANEVVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
+|-+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999876
No 275
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.83 E-value=0.0054 Score=67.93 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=29.0
Q ss_pred eeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeE
Q 020527 105 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139 (325)
Q Consensus 105 i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I 139 (325)
+++|+.+.|.||+|+|||||+..++.......|.+
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~V 763 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTC 763 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCe
Confidence 89999999999999999999998887654443443
No 276
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.83 E-value=0.00049 Score=57.26 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998654
No 277
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.78 E-value=0.00069 Score=56.08 Aligned_cols=22 Identities=32% Similarity=0.650 Sum_probs=20.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHc
Q 020527 109 EVVAIVGLSGSGKSTFVNLLLR 130 (325)
Q Consensus 109 e~~~iiG~nGsGKSTLl~~l~g 130 (325)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999987
No 278
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.76 E-value=0.00074 Score=56.81 Aligned_cols=27 Identities=30% Similarity=0.553 Sum_probs=23.6
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527 106 EANEVVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.++.+++|+|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998643
No 279
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.75 E-value=0.0008 Score=57.41 Aligned_cols=27 Identities=33% Similarity=0.482 Sum_probs=23.8
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527 106 EANEVVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.+|.+++|.|+.||||||+.+.|+..+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998643
No 280
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.74 E-value=0.00079 Score=57.27 Aligned_cols=28 Identities=36% Similarity=0.480 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCCCC
Q 020527 107 ANEVVAIVGLSGSGKSTFVNLLLRLYEP 134 (325)
Q Consensus 107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~~~ 134 (325)
+|.+++|.|+.||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999876543
No 281
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.72 E-value=0.0012 Score=60.88 Aligned_cols=34 Identities=32% Similarity=0.307 Sum_probs=30.3
Q ss_pred CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHc
Q 020527 96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR 130 (325)
Q Consensus 96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~g 130 (325)
..+++..+.+ .|.-++|.|+||+|||||...+.+
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 4778888888 688999999999999999998887
No 282
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.71 E-value=0.00059 Score=57.29 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=22.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCCCC
Q 020527 109 EVVAIVGLSGSGKSTFVNLLLRLYEP 134 (325)
Q Consensus 109 e~~~iiG~nGsGKSTLl~~l~gl~~~ 134 (325)
.+++|+|++|||||||+..|++.++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 37899999999999999999987653
No 283
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.70 E-value=0.00091 Score=57.12 Aligned_cols=28 Identities=21% Similarity=0.340 Sum_probs=24.0
Q ss_pred eeCCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527 105 IEANEVVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 105 i~~Ge~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.++|-+++|.|+.||||||+.+.|+..+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3568899999999999999999998643
No 284
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.69 E-value=0.0008 Score=60.31 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=31.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchHHHh-cCEEE
Q 020527 244 ATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIV 290 (325)
Q Consensus 244 Pts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~~~~-~d~v~ 290 (325)
|||+.+......+++.+.+..+. ...+..+..|..+.++. ++++.
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~--~~~~~~~~~~~~~~~e~~~~~l~ 189 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEG--KVTTNPIIPRYDEDIEREIKHIS 189 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHT--CCCCCCCCCCCCHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhc--cccCCCCCcCCCHHHHHHHHHHH
Confidence 99999999988888888777543 23444566777776654 55543
No 285
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.68 E-value=0.00066 Score=61.56 Aligned_cols=32 Identities=16% Similarity=0.244 Sum_probs=27.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCCCCCCCeE
Q 020527 108 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 139 (325)
Q Consensus 108 Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I 139 (325)
...+.|.||+|+||||++++|++...+..|.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 35799999999999999999999887666643
No 286
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.66 E-value=0.00097 Score=55.83 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcC
Q 020527 108 NEVVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 108 Ge~~~iiG~nGsGKSTLl~~l~gl 131 (325)
+.+++|.|++||||||+.+.|+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999998753
No 287
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.64 E-value=0.00095 Score=55.78 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHHcCCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLYE 133 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~~ 133 (325)
++.|.|++||||||+.+.|+.-+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987554
No 288
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.62 E-value=0.0062 Score=56.85 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=22.6
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527 106 EANEVVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.+..-+.|.||.|+|||||.+.++...
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 344558899999999999999999754
No 289
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.60 E-value=0.001 Score=56.45 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998754
No 290
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.55 E-value=0.0012 Score=55.51 Aligned_cols=23 Identities=39% Similarity=0.661 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
+++|.|+.||||||+.+.|.-.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998765
No 291
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.55 E-value=0.00098 Score=56.17 Aligned_cols=28 Identities=32% Similarity=0.541 Sum_probs=24.3
Q ss_pred eeCCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527 105 IEANEVVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 105 i~~Ge~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
++.+.+++|.|+.||||||+.+.|+..+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567799999999999999999998644
No 292
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.54 E-value=0.00092 Score=55.62 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=18.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527 107 ANEVVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998543
No 293
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.53 E-value=0.0013 Score=55.01 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCC
Q 020527 109 EVVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 109 e~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
=.++++|++|||||||++.+.+-.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999864
No 294
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.50 E-value=0.0015 Score=56.33 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527 107 ANEVVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
+|-++.|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999998644
No 295
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.47 E-value=0.0015 Score=52.91 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++++|+.|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4889999999999999999874
No 296
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.45 E-value=0.0015 Score=56.07 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
+++|+|++||||||+.+.|+.-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999653
No 297
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.45 E-value=0.0016 Score=56.55 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=22.3
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527 106 EANEVVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.++.+++|.|+.||||||+.+.|+.-+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998543
No 298
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.44 E-value=0.0014 Score=53.17 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.++++|++|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 47899999999999999998754
No 299
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.43 E-value=0.0016 Score=55.33 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=22.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCCCC
Q 020527 109 EVVAIVGLSGSGKSTFVNLLLRLYEP 134 (325)
Q Consensus 109 e~~~iiG~nGsGKSTLl~~l~gl~~~ 134 (325)
..+.|.||+|+|||||++.++.....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999986543
No 300
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.43 E-value=0.0016 Score=52.37 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999875
No 301
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.42 E-value=0.0017 Score=52.25 Aligned_cols=23 Identities=43% Similarity=0.543 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.++++|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 302
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.42 E-value=0.0017 Score=52.96 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.++|+|++|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 48999999999999999998754
No 303
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.41 E-value=0.0018 Score=52.56 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999873
No 304
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.41 E-value=0.0017 Score=52.25 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998854
No 305
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.40 E-value=0.0013 Score=55.73 Aligned_cols=22 Identities=45% Similarity=0.533 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++|+|++|+|||||++.+.|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999764
No 306
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.40 E-value=0.0018 Score=53.23 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=21.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHcC
Q 020527 109 EVVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 109 e~~~iiG~nGsGKSTLl~~l~gl 131 (325)
++++|.|+.||||||+.+.|+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999764
No 307
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.39 E-value=0.002 Score=54.66 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527 107 ANEVVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.+-+++|+|+.||||||+.+.|+..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998643
No 308
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.38 E-value=0.0015 Score=53.78 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=20.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCC
Q 020527 109 EVVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 109 e~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998643
No 309
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.37 E-value=0.0019 Score=52.49 Aligned_cols=23 Identities=43% Similarity=0.485 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.++++|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 47899999999999999998754
No 310
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.37 E-value=0.0018 Score=52.16 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++++|+.|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 311
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.37 E-value=0.0017 Score=58.47 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.++|+|++|+|||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
No 312
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.37 E-value=0.0018 Score=54.17 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
No 313
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.37 E-value=0.0018 Score=55.61 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.++|+|++||||||+.+.|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997543
No 314
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.36 E-value=0.0019 Score=52.93 Aligned_cols=23 Identities=39% Similarity=0.478 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998643
No 315
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.36 E-value=0.0019 Score=52.33 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.++++|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
No 316
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.36 E-value=0.0019 Score=52.43 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++++|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999865
No 317
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.35 E-value=0.0019 Score=52.40 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.++++|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998743
No 318
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.34 E-value=0.002 Score=52.87 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.++++|+.|+|||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999988743
No 319
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.33 E-value=0.0017 Score=56.16 Aligned_cols=26 Identities=35% Similarity=0.382 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527 107 ANEVVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.+.++.|+|++||||||+.+.|+.-+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999999998644
No 320
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.33 E-value=0.0019 Score=57.16 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHHcCCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLYE 133 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~~ 133 (325)
.++|+|++|+|||||++.|.|--.
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 589999999999999999998543
No 321
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.33 E-value=0.002 Score=52.14 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.++++|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998643
No 322
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.33 E-value=0.0024 Score=52.26 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcC
Q 020527 107 ANEVVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 107 ~Ge~~~iiG~nGsGKSTLl~~l~gl 131 (325)
+.-.++++|++|+|||||++.+.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4457999999999999999999874
No 323
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.32 E-value=0.002 Score=52.00 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++++|+.|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 324
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.31 E-value=0.0019 Score=54.01 Aligned_cols=23 Identities=39% Similarity=0.612 Sum_probs=20.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHcC
Q 020527 109 EVVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 109 e~~~iiG~nGsGKSTLl~~l~gl 131 (325)
-.++|+|+.|+|||||++.+.+-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999874
No 325
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.31 E-value=0.002 Score=53.76 Aligned_cols=25 Identities=36% Similarity=0.507 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCC
Q 020527 108 NEVVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 108 Ge~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
..+++|.|+.||||||+.+.|+..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999997643
No 326
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.31 E-value=0.0017 Score=54.23 Aligned_cols=24 Identities=42% Similarity=0.537 Sum_probs=20.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCC
Q 020527 109 EVVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 109 e~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999997643
No 327
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.31 E-value=0.0021 Score=52.62 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++++|+.|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 328
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.30 E-value=0.002 Score=52.73 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++++|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 329
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.30 E-value=0.0019 Score=53.66 Aligned_cols=23 Identities=43% Similarity=0.525 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 68999999999999999998754
No 330
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.29 E-value=0.0021 Score=54.60 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCC
Q 020527 108 NEVVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 108 Ge~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
..+++|.|+.||||||+.+.|+..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999998543
No 331
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.29 E-value=0.0019 Score=52.93 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++++|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999864
No 332
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.25 E-value=0.00017 Score=74.84 Aligned_cols=45 Identities=20% Similarity=0.268 Sum_probs=36.6
Q ss_pred eeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEeCC
Q 020527 101 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT 147 (325)
Q Consensus 101 isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~ 147 (325)
.++.+.+++.++|.||+|+|||||.++|++... .+-+.+++.++.
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l~ 548 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPELL 548 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT--CCCCCCCCSSST
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC--CCEEEEechHhh
Confidence 356778999999999999999999999999874 456666666553
No 333
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.25 E-value=0.0023 Score=54.62 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=21.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHcC
Q 020527 109 EVVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 109 e~~~iiG~nGsGKSTLl~~l~gl 131 (325)
-+++|+|+.||||||+.+.|+..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999874
No 334
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.24 E-value=0.0023 Score=56.67 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCC
Q 020527 109 EVVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 109 e~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999998743
No 335
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.23 E-value=0.0022 Score=53.18 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.++++|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999998753
No 336
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.23 E-value=0.0037 Score=53.83 Aligned_cols=35 Identities=31% Similarity=0.244 Sum_probs=28.8
Q ss_pred CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcC
Q 020527 96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl 131 (325)
..++...+.+ .|..++|+||+|||||||...|+.-
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3677777666 4788999999999999999988754
No 337
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.22 E-value=0.0025 Score=51.57 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++++|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999863
No 338
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.22 E-value=0.0026 Score=52.93 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=21.5
Q ss_pred EEEEEcCCCChHHHHHHHHHcCCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLYE 133 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~~ 133 (325)
.++|+|+.|+|||||++.+.|-..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 478999999999999999998654
No 339
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.22 E-value=0.0025 Score=56.80 Aligned_cols=25 Identities=36% Similarity=0.601 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcC
Q 020527 107 ANEVVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 107 ~Ge~~~iiG~nGsGKSTLl~~l~gl 131 (325)
++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4668999999999999999999864
No 340
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.22 E-value=0.0025 Score=53.13 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999999853
No 341
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.21 E-value=0.0025 Score=52.64 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.++++|+.|+|||||++.+.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48899999999999999998643
No 342
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.19 E-value=0.0026 Score=51.65 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=20.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHc
Q 020527 109 EVVAIVGLSGSGKSTFVNLLLR 130 (325)
Q Consensus 109 e~~~iiG~nGsGKSTLl~~l~g 130 (325)
=.++++|++|+|||||++.+.+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999976
No 343
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.19 E-value=0.0026 Score=52.71 Aligned_cols=22 Identities=23% Similarity=0.218 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 344
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.19 E-value=0.0026 Score=53.19 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++|+|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999874
No 345
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.18 E-value=0.0029 Score=51.81 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++++|+.|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 346
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.17 E-value=0.0016 Score=53.75 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=20.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHHc
Q 020527 108 NEVVAIVGLSGSGKSTFVNLLLR 130 (325)
Q Consensus 108 Ge~~~iiG~nGsGKSTLl~~l~g 130 (325)
.=.++++|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34699999999999999999874
No 347
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.16 E-value=0.0028 Score=51.19 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=19.1
Q ss_pred EEEEEcCCCChHHHHHHHHHc
Q 020527 110 VVAIVGLSGSGKSTFVNLLLR 130 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~g 130 (325)
.++++|++|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999999975
No 348
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.15 E-value=0.0027 Score=51.88 Aligned_cols=22 Identities=14% Similarity=0.329 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 349
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.14 E-value=0.0027 Score=58.09 Aligned_cols=25 Identities=48% Similarity=0.591 Sum_probs=22.0
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHcC
Q 020527 106 EANEVVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl 131 (325)
+.| +++|+|++|+|||||++.+.|-
T Consensus 6 ~~g-~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 6 YSG-FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEE-EEEEECSTTSSHHHHHHHHHTS
T ss_pred cCC-EEEEECCCCCCHHHHHHHHhCC
Confidence 344 6999999999999999999985
No 350
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.14 E-value=0.0028 Score=55.87 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcC
Q 020527 107 ANEVVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 107 ~Ge~~~iiG~nGsGKSTLl~~l~gl 131 (325)
++-+++|.||+||||||+.+.|+--
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999753
No 351
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.13 E-value=0.0013 Score=59.83 Aligned_cols=26 Identities=23% Similarity=0.542 Sum_probs=19.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527 107 ANEVVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
++-+++|.|++||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998744
No 352
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.12 E-value=0.0024 Score=57.26 Aligned_cols=23 Identities=43% Similarity=0.567 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.++|+|++|+|||||++.|.+--
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999987643
No 353
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.11 E-value=0.003 Score=51.85 Aligned_cols=23 Identities=30% Similarity=0.303 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.++++|+.|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998643
No 354
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.11 E-value=0.003 Score=52.03 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++++|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5899999999999999999864
No 355
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.10 E-value=0.003 Score=51.57 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.++++|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998743
No 356
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.10 E-value=0.003 Score=52.53 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++++|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 357
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.08 E-value=0.0029 Score=57.17 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHHc
Q 020527 108 NEVVAIVGLSGSGKSTFVNLLLR 130 (325)
Q Consensus 108 Ge~~~iiG~nGsGKSTLl~~l~g 130 (325)
.-+++|.|++||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999984
No 358
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.08 E-value=0.0017 Score=62.98 Aligned_cols=45 Identities=16% Similarity=0.327 Sum_probs=34.8
Q ss_pred CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEE
Q 020527 96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 141 (325)
Q Consensus 96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i 141 (325)
.+++.+ +.+-+|+..+|+|++|+|||||++.|++-.....+.+.+
T Consensus 140 r~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V 184 (473)
T 1sky_E 140 KVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISV 184 (473)
T ss_dssp HHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEE
T ss_pred hHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEE
Confidence 356666 567889999999999999999999998765544444443
No 359
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.06 E-value=0.0095 Score=58.05 Aligned_cols=70 Identities=17% Similarity=0.199 Sum_probs=52.5
Q ss_pred CCCChHHHHHHHHHHH--HcC---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEec
Q 020527 216 DLLSGGQKQRIAIARA--ILR---------------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH 278 (325)
Q Consensus 216 ~~LSgGq~QRv~iAra--l~~---------------~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH 278 (325)
..+||||+|-.-+|.+ +++ .=.++++||+ +-+|.+..+..+++++++ |.-+|++|=
T Consensus 378 g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l------glQliiatP 450 (483)
T 3euj_A 378 SALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL------DMQLLIAAP 450 (483)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT------TCEEEEEES
T ss_pred CCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc------CCEEEEECc
Confidence 4599999996444333 222 2258999999 999999999999999987 667889998
Q ss_pred CchHHHhcCEEEEEe
Q 020527 279 RLSTIKAVDRIVVID 293 (325)
Q Consensus 279 ~~~~~~~~d~v~~l~ 293 (325)
+ .....+|.++.+-
T Consensus 451 ~-~i~p~v~~~~~~~ 464 (483)
T 3euj_A 451 E-NISPERGTTYKLV 464 (483)
T ss_dssp S-SCCCSSSEEEECC
T ss_pred c-hhhhccCceEEEE
Confidence 7 3334578887764
No 360
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.06 E-value=0.0033 Score=51.64 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.++++|+.|+|||||++.+.+-.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 361
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.06 E-value=0.031 Score=52.50 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcC
Q 020527 107 ANEVVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 107 ~Ge~~~iiG~nGsGKSTLl~~l~gl 131 (325)
++..+.|.||+|+|||+|++.++..
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999875
No 362
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.05 E-value=0.0032 Score=54.61 Aligned_cols=23 Identities=43% Similarity=0.544 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
+++|.|++||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999997543
No 363
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.05 E-value=0.0032 Score=52.03 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.++|+|+.|+|||||++.+.+-.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
No 364
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.04 E-value=0.081 Score=51.51 Aligned_cols=34 Identities=29% Similarity=0.234 Sum_probs=27.1
Q ss_pred ceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHc
Q 020527 97 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR 130 (325)
Q Consensus 97 iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~g 130 (325)
-|+.+.--+.+|+++.|.|++|+|||||+.-++-
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 4555433589999999999999999999866653
No 365
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.04 E-value=0.0049 Score=51.88 Aligned_cols=34 Identities=26% Similarity=0.266 Sum_probs=26.7
Q ss_pred CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHc
Q 020527 96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR 130 (325)
Q Consensus 96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~g 130 (325)
..++...+.+. |.-+.|.|+||+|||||...+..
T Consensus 5 ~~lHas~v~v~-G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 5 QTWHANFLVID-KMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEESEEEEET-TEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEEEEC-CEEEEEEcCCCCCHHHHHHHHHH
Confidence 35566666554 88899999999999999987764
No 366
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.04 E-value=0.0032 Score=56.16 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.++|+|++|||||||++.+.|-.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999874
No 367
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.03 E-value=0.0039 Score=51.31 Aligned_cols=27 Identities=22% Similarity=0.318 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCCC
Q 020527 107 ANEVVAIVGLSGSGKSTFVNLLLRLYE 133 (325)
Q Consensus 107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~~ 133 (325)
.+..+.|.||.|+|||||++.++..+.
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 356789999999999999999987653
No 368
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.03 E-value=0.0033 Score=55.63 Aligned_cols=23 Identities=39% Similarity=0.537 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.++|+|++|||||||++.|.|-.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999753
No 369
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.02 E-value=0.0033 Score=57.58 Aligned_cols=22 Identities=55% Similarity=0.625 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
+++|+|+.|+|||||++.|.|-
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7999999999999999999985
No 370
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.02 E-value=0.0033 Score=53.62 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.++++|++|+|||||++.+.+-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999754
No 371
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.00 E-value=0.0036 Score=52.73 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 372
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.00 E-value=0.0022 Score=54.91 Aligned_cols=24 Identities=38% Similarity=0.450 Sum_probs=21.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCC
Q 020527 109 EVVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 109 e~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
-.++|+|+.|+|||||++.+.+-.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999854
No 373
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.99 E-value=0.0035 Score=52.06 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++++|++|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 374
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.99 E-value=0.0031 Score=59.44 Aligned_cols=22 Identities=55% Similarity=0.715 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++|+|++|+|||||++.|++.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999985
No 375
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.98 E-value=0.0037 Score=52.57 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 376
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.98 E-value=0.0036 Score=52.41 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998643
No 377
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.98 E-value=0.0037 Score=51.53 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999854
No 378
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.98 E-value=0.0037 Score=52.07 Aligned_cols=23 Identities=22% Similarity=0.275 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.++|+|+.|+|||||++.+.+-.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
No 379
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.96 E-value=0.0038 Score=52.04 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.++|+|+.|+|||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998743
No 380
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.96 E-value=0.0037 Score=52.22 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999873
No 381
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.95 E-value=0.0037 Score=53.67 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998643
No 382
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.95 E-value=0.0039 Score=53.77 Aligned_cols=26 Identities=27% Similarity=0.533 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527 107 ANEVVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
+|-++.|+|+.||||||+.+.|+.-+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999998644
No 383
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.95 E-value=0.0037 Score=51.75 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcC
Q 020527 108 NEVVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 108 Ge~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.=.++++|+.|+|||||++.+.+-
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999864
No 384
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.93 E-value=0.0041 Score=51.22 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++++|++|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998753
No 385
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.91 E-value=0.0042 Score=51.71 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999863
No 386
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.91 E-value=0.004 Score=52.57 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.++|+|+.|+|||||++.+.+-.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 68999999999999999998754
No 387
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.91 E-value=0.04 Score=62.01 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=25.2
Q ss_pred eeCCcEEEEEcCCCChHHHHHHHHHcCCC
Q 020527 105 IEANEVVAIVGLSGSGKSTFVNLLLRLYE 133 (325)
Q Consensus 105 i~~Ge~~~iiG~nGsGKSTLl~~l~gl~~ 133 (325)
+++|+++.|.||+|+|||||...++.-..
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~a 408 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 408 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999999877765443
No 388
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.90 E-value=0.0041 Score=52.36 Aligned_cols=22 Identities=36% Similarity=0.634 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999863
No 389
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.89 E-value=0.0041 Score=51.16 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHHc
Q 020527 110 VVAIVGLSGSGKSTFVNLLLR 130 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~g 130 (325)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 588999999999999999984
No 390
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.89 E-value=0.0041 Score=51.93 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 48899999999999999998643
No 391
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.88 E-value=0.0045 Score=52.12 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998753
No 392
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.87 E-value=0.0041 Score=53.22 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCC
Q 020527 109 EVVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 109 e~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
-.++|+|+.|||||||++.+++-.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 368999999999999999988753
No 393
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.86 E-value=0.0043 Score=55.77 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.++|+|++|||||||++.+.|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 394
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.86 E-value=0.0045 Score=51.71 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999874
No 395
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.85 E-value=0.0049 Score=55.22 Aligned_cols=30 Identities=40% Similarity=0.464 Sum_probs=22.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCCCCCCCe
Q 020527 109 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 138 (325)
Q Consensus 109 e~~~iiG~nGsGKSTLl~~l~gl~~~~~G~ 138 (325)
-.++++|.+|+|||||++.|.|-..+..|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 489999999999999999999876544443
No 396
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.84 E-value=0.0047 Score=51.35 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=20.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHc
Q 020527 109 EVVAIVGLSGSGKSTFVNLLLR 130 (325)
Q Consensus 109 e~~~iiG~nGsGKSTLl~~l~g 130 (325)
=.++++|+.|+|||||++.+.+
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999985
No 397
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.84 E-value=0.0046 Score=55.10 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.++|+|++|+|||||++.+.|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999854
No 398
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.83 E-value=0.0044 Score=52.74 Aligned_cols=22 Identities=23% Similarity=0.452 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++|+|++|+|||||++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999988754
No 399
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.82 E-value=0.0042 Score=52.07 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 400
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.82 E-value=0.0047 Score=52.19 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 401
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.81 E-value=0.0035 Score=52.27 Aligned_cols=23 Identities=39% Similarity=0.460 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.++++|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 402
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.80 E-value=0.0046 Score=56.19 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.++|+|+.|||||||++.|+|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
No 403
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.80 E-value=0.0049 Score=51.55 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.++++|++|+|||||++.+.+-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 404
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.80 E-value=0.0046 Score=53.48 Aligned_cols=22 Identities=32% Similarity=0.625 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++|+|++|+|||||++.+.+-
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999874
No 405
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.79 E-value=0.0047 Score=52.18 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 406
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.79 E-value=0.005 Score=51.35 Aligned_cols=22 Identities=45% Similarity=0.644 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 407
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.78 E-value=0.0047 Score=57.49 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=22.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCCC
Q 020527 109 EVVAIVGLSGSGKSTFVNLLLRLYE 133 (325)
Q Consensus 109 e~~~iiG~nGsGKSTLl~~l~gl~~ 133 (325)
.+++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3799999999999999999987653
No 408
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.78 E-value=0.0051 Score=51.60 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 409
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.78 E-value=0.0048 Score=55.69 Aligned_cols=22 Identities=32% Similarity=0.650 Sum_probs=20.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHc
Q 020527 109 EVVAIVGLSGSGKSTFVNLLLR 130 (325)
Q Consensus 109 e~~~iiG~nGsGKSTLl~~l~g 130 (325)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
No 410
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.78 E-value=0.0043 Score=51.34 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++++|+.|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 411
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.78 E-value=0.0058 Score=53.27 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527 107 ANEVVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.+..+.|+|+.||||||+.+.|+.-+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998654
No 412
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.78 E-value=0.0051 Score=51.11 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 413
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.77 E-value=0.0054 Score=49.39 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=24.1
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHcCCCC
Q 020527 106 EANEVVAIVGLSGSGKSTFVNLLLRLYEP 134 (325)
Q Consensus 106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~ 134 (325)
..+.-+.|.||+|+|||++.+.|......
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~ 50 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRN 50 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence 34566899999999999999999886543
No 414
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.76 E-value=0.0042 Score=54.51 Aligned_cols=28 Identities=18% Similarity=0.438 Sum_probs=22.1
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHcCCC
Q 020527 106 EANEVVAIVGLSGSGKSTFVNLLLRLYE 133 (325)
Q Consensus 106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~ 133 (325)
.+|-++.+.|++||||||+.+.|.-.+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999987654
No 415
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.76 E-value=0.0047 Score=51.59 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 416
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.76 E-value=0.0051 Score=51.77 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.++|+|+.|+|||||++.+.+-.
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 68999999999999999998743
No 417
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.75 E-value=0.0052 Score=51.99 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHcC
Q 020527 109 EVVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 109 e~~~iiG~nGsGKSTLl~~l~gl 131 (325)
=.++|+|+.|+|||||++.+.+-
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999864
No 418
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.75 E-value=0.0055 Score=53.11 Aligned_cols=29 Identities=28% Similarity=0.299 Sum_probs=24.8
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHcCCCC
Q 020527 106 EANEVVAIVGLSGSGKSTFVNLLLRLYEP 134 (325)
Q Consensus 106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~ 134 (325)
-+|.++.+.|+.||||||+++.|.-.+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999876653
No 419
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.74 E-value=0.0051 Score=52.18 Aligned_cols=23 Identities=17% Similarity=0.288 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.++++|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998743
No 420
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.74 E-value=0.0042 Score=50.98 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++++|++|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 421
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.73 E-value=0.0048 Score=50.73 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCCCC
Q 020527 107 ANEVVAIVGLSGSGKSTFVNLLLRLYEP 134 (325)
Q Consensus 107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~~~ 134 (325)
.+..+.|.||.|+|||||++.++.....
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3567889999999999999999876543
No 422
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.73 E-value=0.0062 Score=56.61 Aligned_cols=26 Identities=23% Similarity=0.465 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527 107 ANEVVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
++.++.|+||+|||||||...|+.-+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 45689999999999999999999765
No 423
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.72 E-value=0.0064 Score=49.86 Aligned_cols=23 Identities=17% Similarity=0.092 Sum_probs=20.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHcC
Q 020527 109 EVVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 109 e~~~iiG~nGsGKSTLl~~l~gl 131 (325)
=.++++|+.|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999864
No 424
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.70 E-value=0.0061 Score=53.80 Aligned_cols=27 Identities=30% Similarity=0.577 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCCC
Q 020527 107 ANEVVAIVGLSGSGKSTFVNLLLRLYE 133 (325)
Q Consensus 107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~~ 133 (325)
+|.++.|.|++||||||+++.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987664
No 425
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.70 E-value=0.0058 Score=52.04 Aligned_cols=22 Identities=32% Similarity=0.375 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999874
No 426
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.70 E-value=0.0043 Score=53.26 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCC
Q 020527 108 NEVVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 108 Ge~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
+-+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999998754
No 427
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.69 E-value=0.006 Score=51.26 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHcCCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLYE 133 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~~ 133 (325)
.++++|++|+|||||++.+.+-..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 589999999999999999988543
No 428
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.69 E-value=0.0054 Score=52.30 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++|+|++|+|||||++.+.+-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 429
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.68 E-value=0.0059 Score=50.97 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 5899999999999999888753
No 430
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.67 E-value=0.0056 Score=58.52 Aligned_cols=26 Identities=46% Similarity=0.623 Sum_probs=22.9
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHcC
Q 020527 106 EANEVVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl 131 (325)
....++.|+|++||||||+.+.|+.-
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999999998763
No 431
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.67 E-value=0.0059 Score=52.22 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++++|++|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 432
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.66 E-value=0.0061 Score=51.16 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=19.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHcC
Q 020527 109 EVVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 109 e~~~iiG~nGsGKSTLl~~l~gl 131 (325)
=.++++|+.|+|||||++.+.+-
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 433
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.65 E-value=0.0058 Score=54.33 Aligned_cols=23 Identities=39% Similarity=0.512 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.++++|++|+|||||++.+.|-.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999843
No 434
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.65 E-value=0.0065 Score=55.68 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=24.6
Q ss_pred EeeCCcEEEEEcCCCChHHHHHHHHHc
Q 020527 104 TIEANEVVAIVGLSGSGKSTFVNLLLR 130 (325)
Q Consensus 104 ~i~~Ge~~~iiG~nGsGKSTLl~~l~g 130 (325)
-+++|+++.|.||+|+|||||...++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999987774
No 435
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.64 E-value=0.0061 Score=51.81 Aligned_cols=23 Identities=39% Similarity=0.423 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.++|+|++|+|||||++.+.+-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998643
No 436
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.62 E-value=0.0064 Score=56.01 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCC
Q 020527 108 NEVVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 108 Ge~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
+.+++|+||+|||||||...|+--+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999998754
No 437
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.61 E-value=0.0068 Score=53.22 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527 107 ANEVVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
...-+.|.||+|+|||||++.++...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34558899999999999999998743
No 438
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.61 E-value=0.0061 Score=51.43 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++++|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
No 439
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.60 E-value=0.0061 Score=54.41 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.++++|++|+|||||++.|.|-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999754
No 440
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.59 E-value=0.0074 Score=52.36 Aligned_cols=27 Identities=33% Similarity=0.564 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCCC
Q 020527 107 ANEVVAIVGLSGSGKSTFVNLLLRLYE 133 (325)
Q Consensus 107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~~ 133 (325)
+|.++.+-|++||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999987665
No 441
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.58 E-value=0.0057 Score=54.96 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.++|+|+.|+|||||++.|.|-.
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999864
No 442
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.57 E-value=0.0042 Score=51.25 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=9.2
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999988753
No 443
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.54 E-value=0.061 Score=59.70 Aligned_cols=35 Identities=23% Similarity=0.270 Sum_probs=27.1
Q ss_pred ceeeeeE--EeeCCcEEEEEcCCCChHHHHHHHHHcC
Q 020527 97 ILNHVCL--TIEANEVVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 97 iL~~isl--~i~~Ge~~~iiG~nGsGKSTLl~~l~gl 131 (325)
-|+.+-= -+++|+++.|.||+|+|||||..-++.-
T Consensus 370 ~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~ 406 (1706)
T 3cmw_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 406 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 4555421 2889999999999999999998766543
No 444
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.54 E-value=0.0061 Score=51.20 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=19.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHc
Q 020527 109 EVVAIVGLSGSGKSTFVNLLLR 130 (325)
Q Consensus 109 e~~~iiG~nGsGKSTLl~~l~g 130 (325)
=.++|+|+.|+|||||++.+.+
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCS
T ss_pred cEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999865
No 445
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.53 E-value=0.007 Score=50.50 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++++|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 446
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.53 E-value=0.008 Score=52.29 Aligned_cols=29 Identities=31% Similarity=0.567 Sum_probs=26.0
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHcCCCC
Q 020527 106 EANEVVAIVGLSGSGKSTFVNLLLRLYEP 134 (325)
Q Consensus 106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~ 134 (325)
.+|.++.+-|+.||||||+.+.|.-.+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 36899999999999999999999987764
No 447
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.52 E-value=0.0068 Score=56.01 Aligned_cols=24 Identities=17% Similarity=0.328 Sum_probs=21.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCC
Q 020527 109 EVVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 109 e~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
..+.|+||+|||||||.+.|+.-+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999755
No 448
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.51 E-value=0.0074 Score=52.80 Aligned_cols=26 Identities=42% Similarity=0.576 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCCC
Q 020527 108 NEVVAIVGLSGSGKSTFVNLLLRLYE 133 (325)
Q Consensus 108 Ge~~~iiG~nGsGKSTLl~~l~gl~~ 133 (325)
|.+++|.|+.||||||+.+.|+..++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 56899999999999999999997653
No 449
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.50 E-value=0.0061 Score=53.11 Aligned_cols=29 Identities=28% Similarity=0.496 Sum_probs=24.2
Q ss_pred EeeCCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527 104 TIEANEVVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 104 ~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.+++..++.|+||.||||+|..+.|+--+
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34667789999999999999999998543
No 450
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.48 E-value=0.0099 Score=51.58 Aligned_cols=59 Identities=15% Similarity=0.130 Sum_probs=37.9
Q ss_pred cCCCCEEEEeCCCC----CCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCch----------HHH-hcCEEEEEe
Q 020527 233 LRDPAILLLDEATS----ALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS----------TIK-AVDRIVVID 293 (325)
Q Consensus 233 ~~~p~llllDEPts----~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~----------~~~-~~d~v~~l~ 293 (325)
-.+|+++++|--+. .-|.....++...|..+.++ .+.++++++|-.. ..+ .||-|+.|.
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~--~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLE--MGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHH--HCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHH--cCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 45899999996432 11444455566666666654 4889999988432 123 389888875
No 451
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.44 E-value=0.031 Score=57.32 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.+.+.||+|+|||++.+.|+...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 452
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.44 E-value=0.0082 Score=51.79 Aligned_cols=22 Identities=36% Similarity=0.634 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 453
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.44 E-value=0.0075 Score=51.75 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.++|+|+.|+|||||++-++.-.
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 68999999999999998887643
No 454
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.43 E-value=0.0085 Score=52.41 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=24.6
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHcCCC
Q 020527 106 EANEVVAIVGLSGSGKSTFVNLLLRLYE 133 (325)
Q Consensus 106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~ 133 (325)
.+|.++.+.|++||||||+.+.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4588999999999999999999987654
No 455
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.42 E-value=0.0019 Score=57.27 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=24.6
Q ss_pred eeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHcC
Q 020527 98 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 98 L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl 131 (325)
+.++++..+.| +.|.||+|+|||||++.++..
T Consensus 36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred HHHCCCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 33444444555 789999999999999999974
No 456
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.35 E-value=0.0087 Score=50.60 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 4899999999999999999764
No 457
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.31 E-value=0.0089 Score=50.65 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHHc
Q 020527 110 VVAIVGLSGSGKSTFVNLLLR 130 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~g 130 (325)
.++++|+.|+|||||++.+.+
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 689999999999999988874
No 458
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=95.30 E-value=0.0039 Score=53.21 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999998854
No 459
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.26 E-value=0.006 Score=50.69 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=19.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHc
Q 020527 109 EVVAIVGLSGSGKSTFVNLLLR 130 (325)
Q Consensus 109 e~~~iiG~nGsGKSTLl~~l~g 130 (325)
=.++++|+.|+|||||++.+.+
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3699999999999999999854
No 460
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.24 E-value=0.01 Score=51.02 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.++|+|+.|+|||||++.+.+-.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 461
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.23 E-value=0.01 Score=54.47 Aligned_cols=25 Identities=20% Similarity=0.398 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCC
Q 020527 108 NEVVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 108 Ge~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
...++|+||+|||||||...|+.-+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3578999999999999999998654
No 462
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.22 E-value=0.006 Score=54.21 Aligned_cols=28 Identities=43% Similarity=0.568 Sum_probs=24.1
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHcCCC
Q 020527 106 EANEVVAIVGLSGSGKSTFVNLLLRLYE 133 (325)
Q Consensus 106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~ 133 (325)
+++-+++|.|+.||||||+.+.|+..+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5678999999999999999999987653
No 463
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.20 E-value=0.0025 Score=61.41 Aligned_cols=37 Identities=27% Similarity=0.332 Sum_probs=29.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCEe
Q 020527 109 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 145 (325)
Q Consensus 109 e~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~~ 145 (325)
.+++++|++|+||||++..|++.+.....+|.+-..|
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 5899999999999999999999876444456554433
No 464
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.19 E-value=0.01 Score=50.72 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999998864
No 465
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=95.18 E-value=0.0043 Score=52.15 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=4.3
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999988764
No 466
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.18 E-value=0.0095 Score=57.41 Aligned_cols=35 Identities=29% Similarity=0.501 Sum_probs=28.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEE
Q 020527 107 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 141 (325)
Q Consensus 107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i 141 (325)
++.+++++|++|+||||++.-|+..+....-+|.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 46799999999999999999999877654345544
No 467
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.17 E-value=0.0094 Score=50.32 Aligned_cols=52 Identities=15% Similarity=0.232 Sum_probs=35.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCch-----------HHHhcCEEEEEe
Q 020527 234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS-----------TIKAVDRIVVID 293 (325)
Q Consensus 234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~-----------~~~~~d~v~~l~ 293 (325)
.+++++++||.-- +++. +.+.+..+.+ .|..|++..++.+ .+..||.|.-|+
T Consensus 75 ~~~dvviIDE~Q~-~~~~----~~~~l~~l~~---~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 75 EDTRGVFIDEVQF-FNPS----LFEVVKDLLD---RGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TTEEEEEECCGGG-SCTT----HHHHHHHHHH---TTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCCEEEEECccc-CCHH----HHHHHHHHHH---CCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 3678999999854 5543 3455555554 2778888888555 234589997775
No 468
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.09 E-value=0.011 Score=49.99 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998853
No 469
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.98 E-value=0.013 Score=50.40 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
++.|+||.||||+|..+.|+--+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998643
No 470
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.93 E-value=0.013 Score=55.64 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=20.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCC
Q 020527 109 EVVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 109 e~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.+++|+||+|||||||.+.|+--+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999988544
No 471
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.90 E-value=0.015 Score=52.35 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCCC
Q 020527 107 ANEVVAIVGLSGSGKSTFVNLLLRLYE 133 (325)
Q Consensus 107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~~ 133 (325)
++..+.|.||+|+|||||.+.++..+.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 456799999999999999998887653
No 472
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.85 E-value=0.014 Score=53.96 Aligned_cols=39 Identities=26% Similarity=0.314 Sum_probs=29.7
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHcCCCCCCCeEEECCE
Q 020527 106 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF 144 (325)
Q Consensus 106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~~~~~G~I~i~g~ 144 (325)
.+|..+.|.||+|+|||||++.++..+......+.+++.
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~ 106 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGS 106 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccch
Confidence 346789999999999999999999877544344555443
No 473
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.84 E-value=0.014 Score=49.03 Aligned_cols=44 Identities=20% Similarity=0.304 Sum_probs=31.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchH
Q 020527 234 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST 282 (325)
Q Consensus 234 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~vtH~~~~ 282 (325)
.++.++++||. ..+++.....+.+.+.... .+..+|++|.....
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~~----~~~~~i~~~~~~~~ 144 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMYS----KSCRFILSCNYVSR 144 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHTT----TTEEEEEEESCGGG
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhcC----CCCeEEEEeCChhh
Confidence 36889999996 5577777777777776642 35667777776653
No 474
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=94.77 E-value=0.019 Score=51.88 Aligned_cols=27 Identities=30% Similarity=0.389 Sum_probs=22.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCCCCC
Q 020527 109 EVVAIVGLSGSGKSTFVNLLLRLYEPS 135 (325)
Q Consensus 109 e~~~iiG~nGsGKSTLl~~l~gl~~~~ 135 (325)
-.++++|.+|+|||||++.|.|-....
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~~~~ 147 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKNIAK 147 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCC-
T ss_pred ceEEEEecCCCchHHHHHHHhcCceee
Confidence 368999999999999999999865433
No 475
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.66 E-value=0.015 Score=54.12 Aligned_cols=26 Identities=35% Similarity=0.369 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCCC
Q 020527 108 NEVVAIVGLSGSGKSTFVNLLLRLYE 133 (325)
Q Consensus 108 Ge~~~iiG~nGsGKSTLl~~l~gl~~ 133 (325)
.-+++|+|+.|+|||||++.|++.+.
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34799999999999999999987653
No 476
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.63 E-value=0.019 Score=52.82 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=23.4
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527 106 EANEVVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.+..-+.|.||.|+|||||++.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 445678999999999999999999865
No 477
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=94.53 E-value=0.013 Score=50.01 Aligned_cols=40 Identities=15% Similarity=0.222 Sum_probs=27.9
Q ss_pred HHHHHHHHcCCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHhh
Q 020527 225 RIAIARAILRDPAILLLDEATS-----ALDSESEHYVKGVLHALR 264 (325)
Q Consensus 225 Rv~iAral~~~p~llllDEPts-----~LD~~~~~~i~~~l~~l~ 264 (325)
.-.|++.+..+|.+...++|+. .+|+...+++...++..+
T Consensus 166 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
T 3gj0_A 166 FLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQ 210 (221)
T ss_dssp HHHHHHHHHTCTTCCEEECCCBCCCSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccccCCCCCCCCCCcchhhhhhhHHHHhhhh
Confidence 3467777888888777777765 677777777776666543
No 478
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.52 E-value=0.021 Score=49.08 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCCC
Q 020527 108 NEVVAIVGLSGSGKSTFVNLLLRLYE 133 (325)
Q Consensus 108 Ge~~~iiG~nGsGKSTLl~~l~gl~~ 133 (325)
|.+++|=|+-||||||+++.|.-.+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999987664
No 479
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=94.52 E-value=0.021 Score=52.11 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcC
Q 020527 108 NEVVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 108 Ge~~~iiG~nGsGKSTLl~~l~gl 131 (325)
+-.++|+|+.|+|||||++.+.+-
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999998765
No 480
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.52 E-value=0.029 Score=49.48 Aligned_cols=28 Identities=29% Similarity=0.377 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCCCC
Q 020527 107 ANEVVAIVGLSGSGKSTFVNLLLRLYEP 134 (325)
Q Consensus 107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~~~ 134 (325)
.+..+.|.||+|+|||+|++.+......
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~~ 55 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSSR 55 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTSTT
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcCc
Confidence 4567889999999999999999987653
No 481
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.51 E-value=0.014 Score=54.56 Aligned_cols=30 Identities=20% Similarity=0.237 Sum_probs=22.7
Q ss_pred CCCChHHHHHHHHHHHH---cC--CCCEEEEeCCC
Q 020527 216 DLLSGGQKQRIAIARAI---LR--DPAILLLDEAT 245 (325)
Q Consensus 216 ~~LSgGq~QRv~iAral---~~--~p~llllDEPt 245 (325)
..+|+||+||.+++|+| +. +++++++|||+
T Consensus 295 ~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 295 LRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp ------CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred CcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 35899999999999999 76 89999999997
No 482
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=94.51 E-value=0.019 Score=54.57 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.++|+|.+++|||||++.|.|--
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999853
No 483
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.50 E-value=0.021 Score=51.71 Aligned_cols=26 Identities=31% Similarity=0.394 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527 107 ANEVVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
+...+.|.||+|+|||+|.+.++..+
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 33467888999999999999999755
No 484
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.48 E-value=0.021 Score=52.72 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=24.3
Q ss_pred EeeCCcEEEEEcCCCChHHHHHHHHHc
Q 020527 104 TIEANEVVAIVGLSGSGKSTFVNLLLR 130 (325)
Q Consensus 104 ~i~~Ge~~~iiG~nGsGKSTLl~~l~g 130 (325)
-+.+|..+.|.||.|+|||||...++.
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 577888899999999999999998875
No 485
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=94.48 E-value=0.016 Score=55.48 Aligned_cols=22 Identities=50% Similarity=0.543 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.++|+|++|+|||||++.|+|-
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 486
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.48 E-value=0.01 Score=57.30 Aligned_cols=36 Identities=25% Similarity=0.434 Sum_probs=27.7
Q ss_pred eeeEEeeCCcE--EEEEcCCCChHHHHHHHHHcCCCCC
Q 020527 100 HVCLTIEANEV--VAIVGLSGSGKSTFVNLLLRLYEPS 135 (325)
Q Consensus 100 ~isl~i~~Ge~--~~iiG~nGsGKSTLl~~l~gl~~~~ 135 (325)
.+.-.++.|.. +.|.||+|+|||||+++|+......
T Consensus 40 ~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~ 77 (447)
T 3pvs_A 40 PLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANAD 77 (447)
T ss_dssp HHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred HHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 33344555554 8999999999999999999887543
No 487
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.47 E-value=0.023 Score=51.94 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCCC
Q 020527 108 NEVVAIVGLSGSGKSTFVNLLLRLYE 133 (325)
Q Consensus 108 Ge~~~iiG~nGsGKSTLl~~l~gl~~ 133 (325)
+..+.|.||+|+|||+|+++|+....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999986543
No 488
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.45 E-value=0.018 Score=51.08 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=22.2
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHcC
Q 020527 106 EANEVVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl 131 (325)
.+...+.|.||+|+|||||++.++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34457889999999999999999875
No 489
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=94.44 E-value=0.019 Score=53.98 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcC
Q 020527 107 ANEVVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 107 ~Ge~~~iiG~nGsGKSTLl~~l~gl 131 (325)
++..++++|++|+|||||++.|.|-
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 4667999999999999999999986
No 490
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=93.44 E-value=0.007 Score=51.05 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=18.9
Q ss_pred EEEEEcCCCChHHHHHHHHHc
Q 020527 110 VVAIVGLSGSGKSTFVNLLLR 130 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~g 130 (325)
.++++|+.|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 589999999999999988764
No 491
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.35 E-value=0.021 Score=51.19 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCC
Q 020527 108 NEVVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 108 Ge~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
+..+.|.||+|+||||+++.++..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3458899999999999999999865
No 492
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.32 E-value=0.021 Score=53.10 Aligned_cols=25 Identities=32% Similarity=0.592 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCC
Q 020527 108 NEVVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 108 Ge~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
+..+.|.||+|+||||+.+.|+..+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4468899999999999999999876
No 493
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=94.30 E-value=0.036 Score=50.89 Aligned_cols=34 Identities=29% Similarity=0.285 Sum_probs=27.3
Q ss_pred CceeeeeEEeeCCcEEEEEcCCCChHHHHHHHHHc
Q 020527 96 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR 130 (325)
Q Consensus 96 ~iL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~g 130 (325)
..++..-+.+. |.-+.|.|+||+||||+...+..
T Consensus 136 ~~~H~~~v~~~-g~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 136 AQIHGVLLEVF-GVGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp EEEEEEEEEET-TEEEEEEESSSSSHHHHHHHHHT
T ss_pred ceeEEEEEEEC-CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46777666664 77899999999999999877653
No 494
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=94.28 E-value=0.014 Score=54.25 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC
Q 020527 110 VVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 110 ~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
.++|+|+.|+|||||++.|.|.-
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
No 495
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.27 E-value=0.026 Score=51.68 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcC
Q 020527 107 ANEVVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 107 ~Ge~~~iiG~nGsGKSTLl~~l~gl 131 (325)
+..-+.|.||+|+|||+|++.++..
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4556899999999999999999875
No 496
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.24 E-value=0.026 Score=49.57 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=20.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCC
Q 020527 109 EVVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 109 e~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
-.+||+|+.||||||+.+.|+--+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999997543
No 497
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.23 E-value=0.029 Score=54.40 Aligned_cols=30 Identities=17% Similarity=0.285 Sum_probs=26.7
Q ss_pred EEeeCCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527 103 LTIEANEVVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 103 l~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
+.+.+|+..+|+|++|+|||||+..|+.-.
T Consensus 148 ~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~ 177 (482)
T 2ck3_D 148 APYAKGGKIGLFGGAGVGKTVLIMELINNV 177 (482)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred cccccCCeeeeecCCCCChHHHHHHHHHhh
Confidence 478999999999999999999998887644
No 498
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=94.22 E-value=0.016 Score=56.25 Aligned_cols=26 Identities=35% Similarity=0.396 Sum_probs=22.5
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHHcC
Q 020527 106 EANEVVAIVGLSGSGKSTFVNLLLRL 131 (325)
Q Consensus 106 ~~Ge~~~iiG~nGsGKSTLl~~l~gl 131 (325)
++|=.++|+|++|+|||||++.++|-
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 34556999999999999999999874
No 499
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.21 E-value=0.026 Score=53.44 Aligned_cols=33 Identities=18% Similarity=0.170 Sum_probs=28.3
Q ss_pred eeeEEeeCCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527 100 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 100 ~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
|.=+.|.+|+..+|+|++|+|||||+..|+...
T Consensus 167 D~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 167 DLFAPIGKGQRGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp HHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred hhcccccCCceEEEecCCCCChhHHHHHHHHHH
Confidence 344578999999999999999999999888754
No 500
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=94.21 E-value=0.02 Score=53.78 Aligned_cols=26 Identities=35% Similarity=0.638 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCC
Q 020527 107 ANEVVAIVGLSGSGKSTFVNLLLRLY 132 (325)
Q Consensus 107 ~Ge~~~iiG~nGsGKSTLl~~l~gl~ 132 (325)
++..++++|++|+|||||++.|.|-.
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhhh
Confidence 56789999999999999999999863
Done!