BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020528
(325 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ISQ|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From
Arabidopsis Thaliana In Complex With C-Terminal Peptide
From Arabidopsis Serine Acetyltransferase
Length = 320
Score = 501 bits (1289), Expect = e-142, Method: Compositional matrix adjust.
Identities = 241/319 (75%), Positives = 272/319 (85%)
Query: 6 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGL 65
S IAKDVTELIG TPLVYLN + +GCV R+AAKLEMMEPCSSVKDRIG+SMI+DAE+KGL
Sbjct: 1 SRIAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGL 60
Query: 66 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA 125
I+PGESVLIEPTSGNTG+GLAF AAAKGY+LIITMPASMS ERR++LLAFG ELVLTDPA
Sbjct: 61 IKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 120
Query: 126 RGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXX 185
+GMKGA+ KAEEI KTPN Y+LQQFENPANPKIHYETTGPEIWKGTGGKID VS
Sbjct: 121 KGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGT 180
Query: 186 XXXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDE 245
KYLKE N +KLYGVEPVESA+LSGGKPGPHKIQGIGAGFIP VL+V+L+DE
Sbjct: 181 GGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDE 240
Query: 246 TVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIVVVFPSFGERY 305
VQ+SS+E+I+ A+ LALKEGLLVGISSG +RPENAGKL V +FPSFGERY
Sbjct: 241 VVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENAGKLFVAIFPSFGERY 300
Query: 306 LSSVLFESVKKEAESMVFE 324
LS+VLF++ +KEAE+M FE
Sbjct: 301 LSTVLFDATRKEAEAMTFE 319
>pdb|1Z7W|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From
Arabidopsis Thaliana
Length = 322
Score = 500 bits (1288), Expect = e-142, Method: Compositional matrix adjust.
Identities = 241/319 (75%), Positives = 272/319 (85%)
Query: 6 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGL 65
S IAKDVTELIG TPLVYLN + +GCV R+AAKLEMMEPCSSVKDRIG+SMI+DAE+KGL
Sbjct: 3 SRIAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGL 62
Query: 66 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA 125
I+PGESVLIEPTSGNTG+GLAF AAAKGY+LIITMPASMS ERR++LLAFG ELVLTDPA
Sbjct: 63 IKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 122
Query: 126 RGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXX 185
+GMKGA+ KAEEI KTPN Y+LQQFENPANPKIHYETTGPEIWKGTGGKID VS
Sbjct: 123 KGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGT 182
Query: 186 XXXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDE 245
KYLKE N +KLYGVEPVESA+LSGGKPGPHKIQGIGAGFIP VL+V+L+DE
Sbjct: 183 GGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDE 242
Query: 246 TVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIVVVFPSFGERY 305
VQ+SS+E+I+ A+ LALKEGLLVGISSG +RPENAGKL V +FPSFGERY
Sbjct: 243 VVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENAGKLFVAIFPSFGERY 302
Query: 306 LSSVLFESVKKEAESMVFE 324
LS+VLF++ +KEAE+M FE
Sbjct: 303 LSTVLFDATRKEAEAMTFE 321
>pdb|1Z7Y|A Chain A, Crystal Structure Of The Arabidopsis Thaliana
O-Acetylserine Sulfhydrylase K46a Mutant
Length = 322
Score = 499 bits (1284), Expect = e-141, Method: Compositional matrix adjust.
Identities = 240/319 (75%), Positives = 271/319 (84%)
Query: 6 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGL 65
S IAKDVTELIG TPLVYLN + +GCV R+AAKLEMMEPCSSV DRIG+SMI+DAE+KGL
Sbjct: 3 SRIAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVADRIGFSMISDAEKKGL 62
Query: 66 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA 125
I+PGESVLIEPTSGNTG+GLAF AAAKGY+LIITMPASMS ERR++LLAFG ELVLTDPA
Sbjct: 63 IKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 122
Query: 126 RGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXX 185
+GMKGA+ KAEEI KTPN Y+LQQFENPANPKIHYETTGPEIWKGTGGKID VS
Sbjct: 123 KGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGT 182
Query: 186 XXXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDE 245
KYLKE N +KLYGVEPVESA+LSGGKPGPHKIQGIGAGFIP VL+V+L+DE
Sbjct: 183 GGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDE 242
Query: 246 TVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIVVVFPSFGERY 305
VQ+SS+E+I+ A+ LALKEGLLVGISSG +RPENAGKL V +FPSFGERY
Sbjct: 243 VVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENAGKLFVAIFPSFGERY 302
Query: 306 LSSVLFESVKKEAESMVFE 324
LS+VLF++ +KEAE+M FE
Sbjct: 303 LSTVLFDATRKEAEAMTFE 321
>pdb|4AEC|A Chain A, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl-
Serine-(Thiol)-Lyase C
pdb|4AEC|B Chain B, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl-
Serine-(Thiol)-Lyase C
Length = 430
Score = 457 bits (1176), Expect = e-129, Method: Compositional matrix adjust.
Identities = 218/314 (69%), Positives = 257/314 (81%)
Query: 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIR 67
IA +V++LIGKTP+VYLN I GCVA IAAKLE+MEPC SVKDRIGYSM+ DAE+KG I
Sbjct: 113 IADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFIS 172
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 127
PG+SVL+EPTSGNTGIGLAF+AA++GYRLI+TMPASMS+ERR++L AFGAELVLTDPA+G
Sbjct: 173 PGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKG 232
Query: 128 MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXXXX 187
M GAVQKAEEI TP++Y+LQQF+NPANPKIHYETTGPEIW T GK+D V+
Sbjct: 233 MTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGIGTGG 292
Query: 188 XXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETV 247
+++KE NP+ ++ GVEP ES +LSGGKPGPHKIQGIGAGFIP LD ++DE +
Sbjct: 293 TITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFIPKNLDQKIMDEVI 352
Query: 248 QISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIVVVFPSFGERYLS 307
ISSEEAIETAK LALKEGL+VGISSG KRPENAGKLI VVFPSFGERYLS
Sbjct: 353 AISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRPENAGKLIAVVFPSFGERYLS 412
Query: 308 SVLFESVKKEAESM 321
+ LF+S+++E E M
Sbjct: 413 TPLFQSIREEVEKM 426
>pdb|3VBE|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|B Chain B, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|C Chain C, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|D Chain D, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
Length = 344
Score = 392 bits (1008), Expect = e-109, Method: Compositional matrix adjust.
Identities = 180/314 (57%), Positives = 240/314 (76%)
Query: 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIR 67
I K V++LIG+TPLVYLN++ +GC A +A K EMM+P +S+KDR Y+MI DAEEK LI
Sbjct: 25 IKKHVSQLIGRTPLVYLNKVTEGCGAYVAVKQEMMQPTASIKDRPAYAMITDAEEKNLIT 84
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 127
PG++ LIEPTSGN GI +AFMAA KGY++++TMP+ SLERR+ + AFGAEL+LTDPA+G
Sbjct: 85 PGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPAKG 144
Query: 128 MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXXXX 187
M G V+KA E+ + TPN+++LQQF NPAN ++H+ETTGPEIW+ T G++D V
Sbjct: 145 MGGTVKKAYELLENTPNAHMLQQFSNPANTQVHFETTGPEIWEDTNGQVDIFVMGIGSGG 204
Query: 188 XXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETV 247
+YLK NP +K+YGVEP ES VL+GGKPGPH I G G GF P +LD++++++ +
Sbjct: 205 TVSGVGQYLKSKNPNVKIYGVEPSESNVLNGGKPGPHHITGNGVGFKPDILDLDVMEKVL 264
Query: 248 QISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIVVVFPSFGERYLS 307
++SSE+A+ A++LALKEGL+VGISSG + PEN GKLIV V PSFGERYLS
Sbjct: 265 EVSSEDAVNMARVLALKEGLMVGISSGANTVAALRLAQLPENKGKLIVTVHPSFGERYLS 324
Query: 308 SVLFESVKKEAESM 321
SVLF+ +++EAE+M
Sbjct: 325 SVLFQELRQEAENM 338
>pdb|3VC3|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|B Chain B, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|C Chain C, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|D Chain D, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|E Chain E, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|F Chain F, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
Length = 344
Score = 390 bits (1002), Expect = e-109, Method: Compositional matrix adjust.
Identities = 179/314 (57%), Positives = 239/314 (76%)
Query: 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIR 67
I K V++LIG+TPLVYLN++ +GC A +A K EMM+P +S+ DR Y+MI DAEEK LI
Sbjct: 25 IKKHVSQLIGRTPLVYLNKVTEGCGAYVAVKQEMMQPTASIADRPAYAMITDAEEKNLIT 84
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 127
PG++ LIEPTSGN GI +AFMAA KGY++++TMP+ SLERR+ + AFGAEL+LTDPA+G
Sbjct: 85 PGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPAKG 144
Query: 128 MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXXXX 187
M G V+KA E+ + TPN+++LQQF NPAN ++H+ETTGPEIW+ T G++D V
Sbjct: 145 MGGTVKKAYELLENTPNAHMLQQFSNPANTQVHFETTGPEIWEDTNGQVDIFVMGIGSGG 204
Query: 188 XXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETV 247
+YLK NP +K+YGVEP ES VL+GGKPGPH I G G GF P +LD++++++ +
Sbjct: 205 TVSGVGQYLKSKNPNVKIYGVEPSESNVLNGGKPGPHHITGNGVGFKPDILDLDVMEKVL 264
Query: 248 QISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIVVVFPSFGERYLS 307
++SSE+A+ A++LALKEGL+VGISSG + PEN GKLIV V PSFGERYLS
Sbjct: 265 EVSSEDAVNMARVLALKEGLMVGISSGANTVAALRLAQLPENKGKLIVTVHPSFGERYLS 324
Query: 308 SVLFESVKKEAESM 321
SVLF+ +++EAE+M
Sbjct: 325 SVLFQELRQEAENM 338
>pdb|2Q3D|A Chain A, 2.2 A Resolution Crystal Structure Of O-acetylserine
Sulfhydrylase (oass) From Mycobacterium Tuberculosis In
Complex With The Reaction Intermediate
Alpha-aminoacrylate
Length = 313
Score = 344 bits (883), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 169/307 (55%), Positives = 216/307 (70%), Gaps = 1/307 (0%)
Query: 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIR 67
IA+D+T+LIG+TPLV L R+ DG VA I AKLE P +SVKDRIG +M+ AE+ GLI+
Sbjct: 6 IAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGLIK 65
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 127
P +++++EPTSGNTGI LA + AA+GYR ++TMP +MSLERRM+L A+GAEL+LT A G
Sbjct: 66 P-DTIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGADG 124
Query: 128 MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXXXX 187
M GA+ KAEE+ +V QQFENPANP IH TT E+W+ T GK+D +V+
Sbjct: 125 MSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGTGG 184
Query: 188 XXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETV 247
+ +KE P + VEP S VLSGG+ GPH IQGIGAGF+P VLD +L+DE +
Sbjct: 185 TITGVAQVIKERKPSARFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDQDLVDEII 244
Query: 248 QISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIVVVFPSFGERYLS 307
+ +E+A+ A+ LA +EGLLVGISSG +RPENAGKLIVVV P FGERYLS
Sbjct: 245 TVGNEDALNVARRLAREEGLLVGISSGAATVAALQVARRPENAGKLIVVVLPDFGERYLS 304
Query: 308 SVLFESV 314
+ LF V
Sbjct: 305 TPLFADV 311
>pdb|2Q3B|A Chain A, 1.8 A Resolution Crystal Structure Of O-Acetylserine
Sulfhydrylase (Oass) Holoenzyme From Mycobacterium
Tuberculosis
pdb|2Q3C|A Chain A, 2.1 A Resolution Crystal Structure Of O-Acetylserine
Sulfhydrylase (Oass) Holoenzyme From Mycobacterium
Tuberculosis In Complex With The Inhibitory Peptide Dfsi
Length = 313
Score = 342 bits (877), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 168/307 (54%), Positives = 215/307 (70%), Gaps = 1/307 (0%)
Query: 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIR 67
IA+D+T+LIG+TPLV L R+ DG VA I AKLE P +SV DRIG +M+ AE+ GLI+
Sbjct: 6 IAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVXDRIGVAMLQAAEQAGLIK 65
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 127
P +++++EPTSGNTGI LA + AA+GYR ++TMP +MSLERRM+L A+GAEL+LT A G
Sbjct: 66 P-DTIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGADG 124
Query: 128 MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXXXX 187
M GA+ KAEE+ +V QQFENPANP IH TT E+W+ T GK+D +V+
Sbjct: 125 MSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGTGG 184
Query: 188 XXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETV 247
+ +KE P + VEP S VLSGG+ GPH IQGIGAGF+P VLD +L+DE +
Sbjct: 185 TITGVAQVIKERKPSARFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDQDLVDEII 244
Query: 248 QISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIVVVFPSFGERYLS 307
+ +E+A+ A+ LA +EGLLVGISSG +RPENAGKLIVVV P FGERYLS
Sbjct: 245 TVGNEDALNVARRLAREEGLLVGISSGAATVAALQVARRPENAGKLIVVVLPDFGERYLS 304
Query: 308 SVLFESV 314
+ LF V
Sbjct: 305 TPLFADV 311
>pdb|3RR2|A Chain A, Structure Of A Cysteine Synthase (O-Acetylserine
Sulfhydrylase (Oass)) From Mycobacterium Marinum Atcc
Baa-535 M
Length = 314
Score = 333 bits (854), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 162/309 (52%), Positives = 215/309 (69%), Gaps = 1/309 (0%)
Query: 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIR 67
IA+++T+LIG TPLV L R+ DG A + AKLE P S+KDRIG +MI AE+ GLI+
Sbjct: 7 IAENITQLIGGTPLVRLRRVTDGAAADVVAKLESFNPAGSIKDRIGVAMIDAAEKAGLIK 66
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 127
P +++++EPTSGNTGI LA ++AA+GY+ ++TMP +MS+ERRM+L A+GAELVLT A G
Sbjct: 67 P-DTIILEPTSGNTGIALAMVSAARGYKCVLTMPDTMSIERRMLLRAYGAELVLTPGAEG 125
Query: 128 MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXXXX 187
M GA+ KAEE+ ++ QQFENPANP +H TT E+W+ T GK+D VS
Sbjct: 126 MAGAIAKAEELAKTDDRYFIPQQFENPANPAVHAVTTAEEVWRDTDGKVDIFVSGVGTGG 185
Query: 188 XXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETV 247
+ +K+ P + VEP S VLSGG+ GPH IQGIGAGF+P VLD+ L+DE +
Sbjct: 186 TITGVAQVIKQRRPSAQFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDLALVDEVI 245
Query: 248 QISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIVVVFPSFGERYLS 307
+ +++A+E A+ +A +EGLLVGISSG RPENAGKLIVVV P FGERYLS
Sbjct: 246 TVGNDDALELARRMATEEGLLVGISSGAAVWAARELAHRPENAGKLIVVVLPDFGERYLS 305
Query: 308 SVLFESVKK 316
+VLF + +
Sbjct: 306 TVLFADLSE 314
>pdb|4I1Y|A Chain A, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|B Chain B, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|C Chain C, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|D Chain D, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
Length = 314
Score = 329 bits (843), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 160/309 (51%), Positives = 213/309 (68%), Gaps = 1/309 (0%)
Query: 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIR 67
IA+++ +LIG TPLV L R+ DG A + AKLE P S+KDRIG +MI AE+ GLI+
Sbjct: 7 IAENIAQLIGGTPLVRLRRVTDGAAADVVAKLESFNPAGSIKDRIGVAMIDAAEKAGLIK 66
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 127
P +++++EPTSGNTGI LA ++AA+GY+ ++TMP +MS+ERRM+L A+GAELVLT A G
Sbjct: 67 P-DTIILEPTSGNTGIALAMVSAARGYKCVLTMPDTMSIERRMLLRAYGAELVLTPGAEG 125
Query: 128 MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXXXX 187
M GA+ KAEE+ ++ QQFENPANP +H TT E+W+ T GK+D VS
Sbjct: 126 MAGAIAKAEELAKTDDRYFIPQQFENPANPAVHAVTTAEEVWRDTDGKVDIFVSGVGTGG 185
Query: 188 XXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETV 247
+ +K+ P + VEP S VLSGG+ GPH IQGIGAGF+P VLD+ L+DE +
Sbjct: 186 TITGVAQVIKQRRPSAQFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDLALVDEVI 245
Query: 248 QISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIVVVFPSFGERYLS 307
+ +++A+E A+ +A +EGLL GISSG RPENAGKLIVVV P FGERYLS
Sbjct: 246 TVGNDDALELARRMATEEGLLFGISSGAAVWAARELAHRPENAGKLIVVVLPDFGERYLS 305
Query: 308 SVLFESVKK 316
+VLF + +
Sbjct: 306 TVLFADLSE 314
>pdb|1OAS|A Chain A, O-Acetylserine Sulfhydrylase From Salmonella Typhimurium
pdb|1OAS|B Chain B, O-Acetylserine Sulfhydrylase From Salmonella Typhimurium
pdb|1FCJ|A Chain A, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|B Chain B, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|C Chain C, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|D Chain D, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
Length = 322
Score = 296 bits (758), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 165/323 (51%), Positives = 213/323 (65%), Gaps = 13/323 (4%)
Query: 6 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGL 65
S I +D + IG TPLV LNRI +G RI AK+E P SVK RIG +MI DAE++G+
Sbjct: 1 SKIYEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVKCRIGANMIWDAEKRGV 57
Query: 66 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA 125
++PG L+EPT+GNTGI LA++AAA+GY+L +TMP +MS+ERR +L A GA LVLT+ A
Sbjct: 58 LKPGVE-LVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGA 116
Query: 126 RGMKGAVQKAEEIRDKTPNSY-VLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXX 184
+GMKGA+QKAEEI P Y +LQQF NPANP+IH +TTGPEIW+ T G++D +S
Sbjct: 117 KGMKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVG 176
Query: 185 XXXXXXXXXKYLKEHNPEIKL--YGVEPVESAVLSGG------KPGPHKIQGIGAGFIPG 236
+Y+K + L VEP +S V++ KPGPHKIQGIGAGFIPG
Sbjct: 177 TGGTLTGVTRYIKGTKGKTDLITVAVEPTDSPVIAQALAGEEIKPGPHKIQGIGAGFIPG 236
Query: 237 VLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIVV 296
LD+ L+D+ V I++EEAI TA+ L +EG+L GISSG + K IVV
Sbjct: 237 NLDLKLIDKVVGITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQEDESFTNKNIVV 296
Query: 297 VFPSFGERYLSSVLFESVKKEAE 319
+ PS GERYLS+ LF + E E
Sbjct: 297 ILPSSGERYLSTALFADLFTEKE 319
>pdb|1D6S|A Chain A, Crystal Structure Of The K41a Mutant Of O-Acetylserine
Sulfhydrylase Complexed In External Aldimine Linkage
With Methionine
pdb|1D6S|B Chain B, Crystal Structure Of The K41a Mutant Of O-Acetylserine
Sulfhydrylase Complexed In External Aldimine Linkage
With Methionine
Length = 322
Score = 294 bits (752), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 164/323 (50%), Positives = 212/323 (65%), Gaps = 13/323 (4%)
Query: 6 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGL 65
S I +D + IG TPLV LNRI +G RI AK+E P SV RIG +MI DAE++G+
Sbjct: 1 SKIYEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVACRIGANMIWDAEKRGV 57
Query: 66 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA 125
++PG L+EPT+GNTGI LA++AAA+GY+L +TMP +MS+ERR +L A GA LVLT+ A
Sbjct: 58 LKPGVE-LVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGA 116
Query: 126 RGMKGAVQKAEEIRDKTPNSY-VLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXX 184
+GMKGA+QKAEEI P Y +LQQF NPANP+IH +TTGPEIW+ T G++D +S
Sbjct: 117 KGMKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVG 176
Query: 185 XXXXXXXXXKYLKEHNPEIKL--YGVEPVESAVLSGG------KPGPHKIQGIGAGFIPG 236
+Y+K + L VEP +S V++ KPGPHKIQGIGAGFIPG
Sbjct: 177 TGGTLTGVTRYIKGTKGKTDLITVAVEPTDSPVIAQALAGEEIKPGPHKIQGIGAGFIPG 236
Query: 237 VLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIVV 296
LD+ L+D+ V I++EEAI TA+ L +EG+L GISSG + K IVV
Sbjct: 237 NLDLKLIDKVVGITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQEDESFTNKNIVV 296
Query: 297 VFPSFGERYLSSVLFESVKKEAE 319
+ PS GERYLS+ LF + E E
Sbjct: 297 ILPSSGERYLSTALFADLFTEKE 319
>pdb|3T4P|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From
Leishmania Donovani In Complex With Designed
Tetrapeptide
pdb|3TBH|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase In
Complex With Octapeptide Derived From Serine Acetyl
Transferase Of Leishmania Donovani
pdb|3SPX|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From
Leishmania Donovani
Length = 334
Score = 290 bits (742), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 144/314 (45%), Positives = 204/314 (64%), Gaps = 1/314 (0%)
Query: 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIR 67
+A+ + +LIG+TP +YLN++ + A++ K+E P +SV DR+G+++ AE++G +
Sbjct: 11 VAQSIDQLIGQTPALYLNKL-NNTKAKVVLKMECENPMASVXDRLGFAIYDKAEKEGKLI 69
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 127
PG+S+++E +SGNTG+ LA + A +GY++IITMP SMSLERR +L FGAE++LT A G
Sbjct: 70 PGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAALG 129
Query: 128 MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXXXX 187
MKGAV A++I PN+ + QF N IH ETTGPEIW+ T +D ++
Sbjct: 130 MKGAVAMAKKIVAANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDCFIAGVGTGG 189
Query: 188 XXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETV 247
+ LK+ ++ VEP ES VLSGGKPGPHKIQGIG GF+P VLD +L+DE +
Sbjct: 190 TLTGVARALKKMGSHARIVAVEPTESPVLSGGKPGPHKIQGIGPGFVPDVLDRSLIDEVL 249
Query: 248 QISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIVVVFPSFGERYLS 307
++ ++AIETA L +G+ G S G +RPE GK IV V PSFGERYLS
Sbjct: 250 CVAGDDAIETALKLTRSDGVFCGFSGGANVYAALKIAERPEMEGKTIVTVIPSFGERYLS 309
Query: 308 SVLFESVKKEAESM 321
+ L+ SV+ E S+
Sbjct: 310 TTLYRSVRDEVSSL 323
>pdb|4AIR|A Chain A, Leishmania Major Cysteine Synthase
pdb|4AIR|B Chain B, Leishmania Major Cysteine Synthase
Length = 354
Score = 289 bits (739), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 144/314 (45%), Positives = 204/314 (64%), Gaps = 1/314 (0%)
Query: 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIR 67
+A+ + +LIG+TP +YLN++ + A++ K+E P +SVKDR+G+++ AE++G +
Sbjct: 32 VAQSIDQLIGQTPALYLNKL-NNTKAKVVLKMECENPMASVKDRLGFAIYDKAEKEGKLI 90
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 127
PG+SV++E +SGNTG+ LA + A +GY++IITMP SMSLERR +L FGAE++LT A G
Sbjct: 91 PGKSVVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAALG 150
Query: 128 MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXXXX 187
MKGAV A++I PN+ + QF N IH ETTGPEIW+ T +D ++
Sbjct: 151 MKGAVTMAKKIVTANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDCFIAGVGTGG 210
Query: 188 XXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETV 247
+ LK+ ++ VEP+ES VLSGGKPG HKIQGIG GF+P VLD +L+DE
Sbjct: 211 TLTGVARALKKMGSHARIVAVEPMESPVLSGGKPGAHKIQGIGPGFVPDVLDRSLIDEVF 270
Query: 248 QISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIVVVFPSFGERYLS 307
++ ++AIETA L +G+ G S G +RPE GK IV + PSFGERYLS
Sbjct: 271 CVAGDDAIETALKLTRSDGVFCGFSGGANVYAALKIAERPEMEGKTIVTIIPSFGERYLS 330
Query: 308 SVLFESVKKEAESM 321
+ L+ SV+ E S+
Sbjct: 331 TALYRSVRDEVSSL 344
>pdb|2EGU|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrase From
Geobacillus Kaustophilus Hta426
Length = 308
Score = 275 bits (703), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 155/301 (51%), Positives = 205/301 (68%), Gaps = 3/301 (0%)
Query: 12 VTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGES 71
+TELIG TP V LNRIVD A + KLE M P SSVKDRI +MI AE+ G ++PG++
Sbjct: 8 ITELIGDTPAVKLNRIVDEDSADVYLKLEFMNPGSSVKDRIALAMIEAAEKAGKLKPGDT 67
Query: 72 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGA 131
+ +EPTSGNTGIGLA +AAAKGY+ ++ MP +MSLERR +L A+GAELVLT A+GM+GA
Sbjct: 68 I-VEPTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGAQGMRGA 126
Query: 132 VQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXXXXXXXX 191
+ KAEE+ + ++ QQF+N ANP+IH TTG EI + G ++DA V+
Sbjct: 127 IAKAEELV-REHGYFMPQQFKNEANPEIHRLTTGKEIVEQMGDQLDAFVAGVGTGGTITG 185
Query: 192 XXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISS 251
K L+E P IK+Y VEP +S VLSGGKPGPHKIQGIGAGF+P +LD ++ D + +++
Sbjct: 186 AGKVLREAYPNIKIYAVEPADSPVLSGGKPGPHKIQGIGAGFVPDILDTSIYDGVITVTT 245
Query: 252 EEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIVVVFPSFGERYLSSVLF 311
EEA A+ A +EG+L GISSG K GK ++ + PS GERYLS+ L+
Sbjct: 246 EEAFAAARRAAREEGILGGISSGAAIHAALKVAKE-LGKGKKVLAIIPSNGERYLSTPLY 304
Query: 312 E 312
+
Sbjct: 305 Q 305
>pdb|1VE1|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase
pdb|2ECO|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Methylvalerate
pdb|2ECQ|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 3-Hydroxylactate
pdb|2EFY|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Acetylbutyric Acid
pdb|2EFY|B Chain B, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Acetylbutyric Acid
Length = 304
Score = 266 bits (679), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 143/297 (48%), Positives = 195/297 (65%), Gaps = 3/297 (1%)
Query: 16 IGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGE-SVLI 74
IGKTP+V L ++V+ +A + KLE + P S+KDR + MI DAEE+G++RPG V++
Sbjct: 7 IGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSGQVIV 66
Query: 75 EPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQK 134
EPTSGNTGIGLA +AA++GYRLI+TMPA MS ER+ VL AFGAELVLTDP R M A ++
Sbjct: 67 EPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLAAREE 126
Query: 135 AEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXXXXXXXXXXK 194
A ++++ +++ QF+NPAN + HYETTGPE+++ G+IDA V +
Sbjct: 127 ALRLKEEL-GAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTITGVGR 185
Query: 195 YLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEA 254
YLKE P +K+ VEP S VLSGGK G H QG+G GFIP LD++LLD +Q+ E+A
Sbjct: 186 YLKERIPHVKVIAVEPARSNVLSGGKMGQHGFQGMGPGFIPENLDLSLLDGVIQVWEEDA 245
Query: 255 IETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIVVVFPSFGERYLSSVLF 311
A+ LA +EGL +G+SSG R GK + + P G +YLS+ L+
Sbjct: 246 FPLARRLAREEGLFLGMSSGGIVWAALQVA-RELGPGKRVACISPDGGWKYLSTPLY 301
>pdb|1Y7L|A Chain A, O-Acetylserine Sulfhydrylase Complex
pdb|3IQG|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex With
Peptide Mnwni
pdb|3IQH|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex With
Peptide Mnydi
pdb|3IQI|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex With
Peptide Mneni
Length = 316
Score = 257 bits (656), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 151/316 (47%), Positives = 199/316 (62%), Gaps = 11/316 (3%)
Query: 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIR 67
I D + IG TPLV L G + K+E P SV RIG +M+ AE+ G +
Sbjct: 3 IYADNSYSIGNTPLVRLKHF--GHNGNVVVKIEGRNPSYSVXCRIGANMVWQAEKDGTLT 60
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 127
G+ + ++ TSGNTGI LA++AAA+GY++ +TMP +MSLER+ +L G LVLT+ A+G
Sbjct: 61 KGKEI-VDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKG 119
Query: 128 MKGAVQKAEEIRDKTPNSYV-LQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXXX 186
MKGA+ KAEEI P+ YV L+QFENPANP+IH ETTGPEIWK T GK+D +V+
Sbjct: 120 MKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGTG 179
Query: 187 XXXXXXXKYLK-EHNPEIKLYGVEPVESAVLSGG------KPGPHKIQGIGAGFIPGVLD 239
+ +K + +I VEPVES V+S KPGPHKIQGIGAGFIP LD
Sbjct: 180 GSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGEEVKPGPHKIQGIGAGFIPKNLD 239
Query: 240 VNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIVVVFP 299
++++D + S+ A+ TA+ L +EG+L GISSG K PE A KLIVV+ P
Sbjct: 240 LSIIDRVETVDSDTALATARRLMAEEGILAGISSGAAVAAADRLAKLPEFADKLIVVILP 299
Query: 300 SFGERYLSSVLFESVK 315
S ERYLS+ LFE ++
Sbjct: 300 SASERYLSTALFEGIE 315
>pdb|3FCA|A Chain A, Genetic Incorporation Of A Metal-Ion Chelating Amino Acid
Into Proteins As Biophysical Probe
pdb|3FCA|B Chain B, Genetic Incorporation Of A Metal-Ion Chelating Amino Acid
Into Proteins As Biophysical Probe
Length = 291
Score = 234 bits (598), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 141/295 (47%), Positives = 181/295 (61%), Gaps = 10/295 (3%)
Query: 14 ELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVL 73
LIG TP+V L D +RI KLE P SVKDR MI DAE++GL++ G +
Sbjct: 4 RLIGSTPIVRL----DSIDSRIXLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNG---I 56
Query: 74 IEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQ 133
+EPTSGN GI +A + A +G+R+I+TMP +MS+ERR VL GAELVLT GMKGAV+
Sbjct: 57 VEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAVE 116
Query: 134 KAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXXXXXXXXXX 193
KA EI +T +++L QFENP N H TTGPEI K +IDA V+
Sbjct: 117 KALEISRET-GAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVG 175
Query: 194 KYLKEH-NPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSE 252
+ LK +K+ VEP +S VLSGG+PG H IQGIGAGF+P +LD +++DE + + E
Sbjct: 176 RVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGIGAGFVPKILDRSVIDEVITVEDE 235
Query: 253 EAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIVVVFPSFGERYLS 307
EA E A+ LA KEGLLVGISSG ++ + +V V P ERYLS
Sbjct: 236 EAYEMARYLAKKEGLLVGISSGANVAAALKVAQKLGPDAR-VVTVAPDHAERYLS 289
>pdb|1O58|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|B Chain B, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|C Chain C, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|D Chain D, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
Length = 303
Score = 234 bits (598), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 141/295 (47%), Positives = 181/295 (61%), Gaps = 10/295 (3%)
Query: 14 ELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVL 73
LIG TP+V L D +RI KLE P SVKDR MI DAE++GL++ G +
Sbjct: 16 RLIGSTPIVRL----DSIDSRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNG---I 68
Query: 74 IEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQ 133
+EPTSGN GI +A + A +G+R+I+TMP +MS+ERR VL GAELVLT GMKGAV+
Sbjct: 69 VEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAVE 128
Query: 134 KAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXXXXXXXXXX 193
KA EI +T +++L QFENP N H TTGPEI K +IDA V+
Sbjct: 129 KALEISRET-GAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVG 187
Query: 194 KYLKEH-NPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSE 252
+ LK +K+ VEP +S VLSGG+PG H IQGIGAGF+P +LD +++DE + + E
Sbjct: 188 RVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGIGAGFVPKILDRSVIDEVITVEDE 247
Query: 253 EAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIVVVFPSFGERYLS 307
EA E A+ LA KEGLLVGISSG ++ + +V V P ERYLS
Sbjct: 248 EAYEMARYLAKKEGLLVGISSGANVAAALKVAQKLGPDAR-VVTVAPDHAERYLS 301
>pdb|3BM5|A Chain A, Crystal Structure Of O-Acetyl-Serine Sulfhydrylase From
Entamoeba Histolytica In Complex With Cysteine
pdb|3BM5|B Chain B, Crystal Structure Of O-Acetyl-Serine Sulfhydrylase From
Entamoeba Histolytica In Complex With Cysteine
Length = 338
Score = 226 bits (576), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 134/312 (42%), Positives = 189/312 (60%), Gaps = 11/312 (3%)
Query: 8 IAKDVTELIGKTPLVYLN------RIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAE 61
I ++ E IG TPLV L+ RI G RI KLE P SSVKDR+G++++ A
Sbjct: 12 IYHNILETIGGTPLVELHGVTEHPRIKKG--TRILVKLEYFNPMSSVKDRVGFNIVYQAI 69
Query: 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121
+ G ++PG + IE TSGNTGI L A GYR+ I MP++MS+ER+M++ AFGAEL+L
Sbjct: 70 KDGRLKPGMEI-IESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELIL 128
Query: 122 TDPARGMKGAVQKAEEIRDKTPNSY-VLQQFENPANPKIHYETTGPEIWKGTGGKIDALV 180
T+ +GM GA+++ ++ + P Y V QF NP N H+ T EIW+ T G++D +V
Sbjct: 129 TEGKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHHYTAN-EIWEDTDGEVDIVV 187
Query: 181 SXXXXXXXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDV 240
S + LKE IK+ VEP ESAVL G GPH IQGIGAGFIP +
Sbjct: 188 SAVGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKGPHGIQGIGAGFIPDIYKK 247
Query: 241 NLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIVVVFPS 300
+DE + I +++A + A+ + +G++ G+SSG ++PEN GK IV++ PS
Sbjct: 248 EFVDEIIPIKTQDAWKMARAVVKYDGIMCGMSSGAAILAGLKEAEKPENEGKTIVIIVPS 307
Query: 301 FGERYLSSVLFE 312
GERYLS+ L++
Sbjct: 308 CGERYLSTDLYK 319
>pdb|2PQM|A Chain A, Crystal Structure Of Cysteine Synthase (Oass) From
Entamoeba Histolytica At 1.86 A Resolution
pdb|2PQM|B Chain B, Crystal Structure Of Cysteine Synthase (Oass) From
Entamoeba Histolytica At 1.86 A Resolution
Length = 343
Score = 226 bits (576), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 134/312 (42%), Positives = 189/312 (60%), Gaps = 11/312 (3%)
Query: 8 IAKDVTELIGKTPLVYLN------RIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAE 61
I ++ E IG TPLV L+ RI G RI KLE P SSVKDR+G++++ A
Sbjct: 13 IYHNILETIGGTPLVELHGVTEHPRIKKG--TRILVKLEYFNPMSSVKDRVGFNIVYQAI 70
Query: 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121
+ G ++PG + IE TSGNTGI L A GYR+ I MP++MS+ER+M++ AFGAEL+L
Sbjct: 71 KDGRLKPGMEI-IESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELIL 129
Query: 122 TDPARGMKGAVQKAEEIRDKTPNSY-VLQQFENPANPKIHYETTGPEIWKGTGGKIDALV 180
T+ +GM GA+++ ++ + P Y V QF NP N H+ T EIW+ T G++D +V
Sbjct: 130 TEGKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHHYTAN-EIWEDTDGEVDIVV 188
Query: 181 SXXXXXXXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDV 240
S + LKE IK+ VEP ESAVL G GPH IQGIGAGFIP +
Sbjct: 189 SAVGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKGPHGIQGIGAGFIPDIYKK 248
Query: 241 NLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIVVVFPS 300
+DE + I +++A + A+ + +G++ G+SSG ++PEN GK IV++ PS
Sbjct: 249 EFVDEIIPIKTQDAWKMARAVVKYDGIMCGMSSGAAILAGLKEAEKPENEGKTIVIIVPS 308
Query: 301 FGERYLSSVLFE 312
GERYLS+ L++
Sbjct: 309 CGERYLSTDLYK 320
>pdb|2BHT|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|B Chain B, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|C Chain C, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|D Chain D, Crystal Structure Of O-Acetylserine Sulfhydrylase B
Length = 303
Score = 211 bits (537), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 117/298 (39%), Positives = 173/298 (58%), Gaps = 11/298 (3%)
Query: 14 ELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVL 73
+ IG TPLV L R+ + + KLE P SV DR SMI +AE++G I+PG+ VL
Sbjct: 6 QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVXDRAALSMIVEAEKRGRIKPGD-VL 64
Query: 74 IEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQ 133
IE TSGNTGI LA +AA KGYR+ + MP +MS ERR + A+GAEL+L +GM+GA
Sbjct: 65 IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARD 124
Query: 134 KAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXXXXXXXXXX 193
A E+ ++ +L QF NP NPK HY TTGPEIW+ TGG+I VS
Sbjct: 125 LALEMANRGEGK-LLDQFNNPDNPKAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVS 183
Query: 194 KYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEE 253
++++E + + + G++P E + + G + P + ++PG+ + +L+DE + I +
Sbjct: 184 EFMREQSKPVTIVGLQPEEGSSIPGIRRWPTE-------YLPGIFNASLVDEVLDIHQRD 236
Query: 254 AIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIVVVFPSFGERYLSSVLF 311
A T + LA++EG+ G+SSG K N ++V + G+RYLS+ +F
Sbjct: 237 AENTMRELAVREGIFCGVSSGGAVAGALRVAK--ANPDAVVVAIICDRGDRYLSTGVF 292
>pdb|2BHS|A Chain A, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|B Chain B, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|C Chain C, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|D Chain D, Crystal Structure Of Cysteine Synthase B
Length = 303
Score = 211 bits (536), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 117/298 (39%), Positives = 173/298 (58%), Gaps = 11/298 (3%)
Query: 14 ELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVL 73
+ IG TPLV L R+ + + KLE P SVKDR SMI +AE++G I+PG+ VL
Sbjct: 6 QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGD-VL 64
Query: 74 IEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQ 133
IE TSGNTGI LA +AA KGYR+ + MP +MS ERR + A+GAEL+L +GM+GA
Sbjct: 65 IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARD 124
Query: 134 KAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXXXXXXXXXX 193
A E+ ++ +L QF NP NP HY TTGPEIW+ TGG+I VS
Sbjct: 125 LALEMANRGEGK-LLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVS 183
Query: 194 KYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEE 253
++++E + + + G++P E + + G + P + ++PG+ + +L+DE + I +
Sbjct: 184 RFMREQSKPVTIVGLQPEEGSSIPGIRRWPTE-------YLPGIFNASLVDEVLDIHQRD 236
Query: 254 AIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIVVVFPSFGERYLSSVLF 311
A T + LA++EG+ G+SSG K N ++V + G+RYLS+ +F
Sbjct: 237 AENTMRELAVREGIFCGVSSGGAVAGALRVAK--ANPDAVVVAIICDRGDRYLSTGVF 292
>pdb|2JC3|A Chain A, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|B Chain B, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|C Chain C, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|D Chain D, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|E Chain E, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|F Chain F, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|G Chain G, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|H Chain H, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
Length = 303
Score = 209 bits (531), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 118/298 (39%), Positives = 170/298 (57%), Gaps = 11/298 (3%)
Query: 14 ELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVL 73
+ IG TPLV L RI + I KLE P SVKDR SMI +AE++G I+PG+ VL
Sbjct: 6 QTIGNTPLVKLQRIGPDNGSEIWVKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGD-VL 64
Query: 74 IEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQ 133
IE TSGNTGI LA +AA KGYR+ + MP +MS ERR + A+GAEL+L +GM+GA
Sbjct: 65 IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARD 124
Query: 134 KAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXXXXXXXXXX 193
A + ++ +L QF NP NP HY TTGPEIW+ T G+I VS
Sbjct: 125 LALAMSERGEGK-LLDQFNNPDNPYAHYTTTGPEIWRQTSGRITHFVSSMGTTGTITGVS 183
Query: 194 KYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEE 253
++L+E + + G++P E + + G + P A ++PG+ + +L+DE + I +
Sbjct: 184 RFLREQEKPVTIVGLQPEEGSSIPGIRRWP-------AEYMPGIFNASLVDEVLDIHQND 236
Query: 254 AIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIVVVFPSFGERYLSSVLF 311
A T + LA++EG+ G+SSG + G ++V + G+RYLS+ +F
Sbjct: 237 AENTMRELAVREGIFCGVSSGGAVAGALRVAR--ATPGAIVVAIICDRGDRYLSTGVF 292
>pdb|2V03|A Chain A, High Resolution Structure And Catalysis Of An O-
Acetylserine Sulfhydrylase
Length = 303
Score = 206 bits (525), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 115/298 (38%), Positives = 171/298 (57%), Gaps = 11/298 (3%)
Query: 14 ELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVL 73
+ IG TPLV L R+ + + KLE P SV DR SMI +AE++G I+PG+ VL
Sbjct: 6 QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVXDRAALSMIVEAEKRGEIKPGD-VL 64
Query: 74 IEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQ 133
IE TSGNTGI LA +AA KGYR+ + MP +MS ERR + A+GAEL+L +GM+GA
Sbjct: 65 IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARD 124
Query: 134 KAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXXXXXXXXXX 193
A E+ ++ +L QF NP NP HY TTGPEIW+ TGG+I VS
Sbjct: 125 LALEMANRGEGK-LLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVS 183
Query: 194 KYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEE 253
++++E + + + G++P E + + G + P + ++PG+ + +L+DE + I +
Sbjct: 184 RFMREQSKPVTIVGLQPEEGSSIPGIRRWPTE-------YLPGIFNASLVDEVLDIHQRD 236
Query: 254 AIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIVVVFPSFGERYLSSVLF 311
A T + LA++EG+ G+SSG N ++V + G+RYLS+ +F
Sbjct: 237 AENTMRELAVREGIFCGVSSGGAVAGALRVAA--ANPDAVVVAIICDRGDRYLSTGVF 292
>pdb|1M54|A Chain A, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|B Chain B, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|C Chain C, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|D Chain D, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|E Chain E, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|F Chain F, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
Length = 363
Score = 192 bits (489), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 119/314 (37%), Positives = 171/314 (54%), Gaps = 14/314 (4%)
Query: 8 IAKDVTELIGKTPLVYLNRIVD--GCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGL 65
I D+ + IG TP+V +N+I G + AK E SVKDRI MI DAE G
Sbjct: 33 ILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGT 92
Query: 66 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA 125
++PG+++ IEPTSGNTGIGLA AA +GYR II MP MS E+ VL A GAE+V T P
Sbjct: 93 LKPGDTI-IEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRT-PT 150
Query: 126 RGM----KGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVS 181
+ V A ++++ PNS++L Q+ N +NP HY+TT EI + GK+D LV+
Sbjct: 151 NARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVA 210
Query: 182 XXXXXXXXXXXXKYLKEHNPEIKLYGVEP-----VESAVLSGGKPGPHKIQGIGAGFIPG 236
+ LKE P ++ GV+P E L+ + ++++GIG FIP
Sbjct: 211 SVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTTYEVEGIGYDFIPT 270
Query: 237 VLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIVV 296
VLD ++D+ + + EEA A++L +EGLL G S+G + + G+ VV
Sbjct: 271 VLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKAAQELQE-GQRCVV 329
Query: 297 VFPSFGERYLSSVL 310
+ P Y++ L
Sbjct: 330 ILPDSVRNYMTKFL 343
>pdb|1JBQ|A Chain A, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|B Chain B, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|C Chain C, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|D Chain D, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|E Chain E, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|F Chain F, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
Length = 435
Score = 191 bits (484), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 119/314 (37%), Positives = 171/314 (54%), Gaps = 14/314 (4%)
Query: 8 IAKDVTELIGKTPLVYLNRIVD--GCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGL 65
I D+ + IG TP+V +N+I G + AK E SVKDRI MI DAE G
Sbjct: 98 ILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGT 157
Query: 66 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA 125
++PG+++ IEPTSGNTGIGLA AA +GYR II MP MS E+ VL A GAE+V T P
Sbjct: 158 LKPGDTI-IEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRT-PT 215
Query: 126 RGM----KGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVS 181
+ V A ++++ PNS++L Q+ N +NP HY+TT EI + GK+D LV+
Sbjct: 216 NARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVA 275
Query: 182 XXXXXXXXXXXXKYLKEHNPEIKLYGVEP-----VESAVLSGGKPGPHKIQGIGAGFIPG 236
+ LKE P ++ GV+P E L+ + ++++GIG FIP
Sbjct: 276 SVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTTYEVEGIGYDFIPT 335
Query: 237 VLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIVV 296
VLD ++D+ + + EEA A++L +EGLL G S+G + + G+ VV
Sbjct: 336 VLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKAAQELQE-GQRCVV 394
Query: 297 VFPSFGERYLSSVL 310
+ P Y++ L
Sbjct: 395 ILPDSVRNYMTKFL 408
>pdb|3PC2|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila
pdb|3PC3|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Aminoacrylate
pdb|3PC4|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Serine
Length = 527
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 115/323 (35%), Positives = 171/323 (52%), Gaps = 14/323 (4%)
Query: 2 VEEKSVIAKDVTELIGKTPLVYLNRI--VDGCVARIAAKLEMMEPCSSVKDRIGYSMIAD 59
+ + I ++ E+IG TPLV LN I DG + AK E + P SVKDRIGY M+ D
Sbjct: 44 IAHRQQITPNILEVIGCTPLVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQD 103
Query: 60 AEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119
AEE+GL++PG ++ IEPTSGNTGIGLA A KGY+ II MP MS E+ L GA++
Sbjct: 104 AEEQGLLKPGYTI-IEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKI 162
Query: 120 VLTDPARGM----KGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGK 175
+ T P +G + A++++ +TPNS VL Q+ N NP HY+ T EI K
Sbjct: 163 IRT-PTEAAYDSPEGLIYVAQQLQRETPNSIVLDQYRNAGNPLAHYDGTAAEILWQLDNK 221
Query: 176 IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGVEPVES-----AVLSGGKPGPHKIQGIG 230
+D +V + +KE P ++ GV+P S A L+ ++++GIG
Sbjct: 222 VDMIVVSAGTAGTISGIGRKIKEQVPSCQIVGVDPYGSILARPAELNKTDVQFYEVEGIG 281
Query: 231 AGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENA 290
F P V D ++D +I + ++ L +EGLL G SSG ++ +
Sbjct: 282 YDFPPTVFDDTVVDVWTKIGDSDCFPMSRRLNAEEGLLCGGSSGGAMHAALEHARKLKK- 340
Query: 291 GKLIVVVFPSFGERYLSSVLFES 313
G+ VV+ P Y++ + ++
Sbjct: 341 GQRCVVILPDGIRNYMTKFVSDN 363
>pdb|3DWG|A Chain A, Crystal Structure Of A Sulfur Carrier Protein Complex
Found In The Cysteine Biosynthetic Pathway Of
Mycobacterium Tuberculosis
pdb|3DWG|B Chain B, Crystal Structure Of A Sulfur Carrier Protein Complex
Found In The Cysteine Biosynthetic Pathway Of
Mycobacterium Tuberculosis
Length = 325
Score = 157 bits (397), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 106/318 (33%), Positives = 157/318 (49%), Gaps = 18/318 (5%)
Query: 14 ELIGKTPLVYLNRIV-------DGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLI 66
+ +G TPLV L R+ DG R+ AKLE P S+KDR MI AE GL+
Sbjct: 11 QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLL 70
Query: 67 RPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPAR 126
RPG ++L EPTSGNTGI LA A KGYRLI MP + S+ERR +L +GA+++ +
Sbjct: 71 RPGATIL-EPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEG 129
Query: 127 GMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXXX 186
G AV A+E+ P+ +L Q+ NPAN HY TGPE+ +I V+
Sbjct: 130 GSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PEITHFVAGLGTT 188
Query: 187 XXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDET 246
++L+EH +K+ EP G + ++ + GF+P + D +L
Sbjct: 189 GTLMGTGRFLREHVANVKIVAAEPRYG-------EGVYALRNMDEGFVPELYDPEILTAR 241
Query: 247 VQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKL--IVVVFPSFGER 304
+ + +A+ + L EG+ GIS+G AG+ I +V G +
Sbjct: 242 YSVGAVDAVRRTRELVHTEGIFAGISTGAVLHAALGVGAGALAAGERADIALVVADAGWK 301
Query: 305 YLSSVLFESVKKEAESMV 322
YLS+ + +AE+ +
Sbjct: 302 YLSTGAYAGSLDDAETAL 319
>pdb|3DWI|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cysm, The
Cysteine Synthase B
pdb|3DWI|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Cysm, The
Cysteine Synthase B
Length = 323
Score = 155 bits (393), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 105/318 (33%), Positives = 156/318 (49%), Gaps = 18/318 (5%)
Query: 14 ELIGKTPLVYLNRIV-------DGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLI 66
+ +G TPLV L R+ DG R+ AKLE P S+KDR MI AE GL+
Sbjct: 9 QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLL 68
Query: 67 RPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPAR 126
RPG ++L EPTSGNTGI LA A KGYRLI MP + S+ERR +L +GA+++ +
Sbjct: 69 RPGATIL-EPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEG 127
Query: 127 GMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXXX 186
G AV A+E+ P+ +L Q+ NPAN HY TGPE+ +I V+
Sbjct: 128 GSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PEITHFVAGLGTT 186
Query: 187 XXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDET 246
++L+EH + + EP G + ++ + GF+P + D +L
Sbjct: 187 GTLMGTGRFLREHVANVAIVAAEPRYG-------EGVYALRNMDEGFVPELYDPEILTAR 239
Query: 247 VQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKL--IVVVFPSFGER 304
+ + +A+ + L EG+ GIS+G AG+ I +V G +
Sbjct: 240 YSVGAVDAVRRTRELVHTEGIFAGISTGAVLHAALGVGAGALAAGERADIALVVADAGWK 299
Query: 305 YLSSVLFESVKKEAESMV 322
YLS+ + +AE+ +
Sbjct: 300 YLSTGAYAGSLDDAETAL 317
>pdb|3DKI|A Chain A, 2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobacterium
Tuberculosis An O-Phosphoserine Dependent Cysteine
Synthase
pdb|3DKI|B Chain B, 2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobacterium
Tuberculosis An O-Phosphoserine Dependent Cysteine
Synthase
pdb|3FGP|A Chain A, 2.05 A Crystal Structure Of Cysm From Mycobacterium
Tuberculosis - Open And Closed Conformations
pdb|3FGP|B Chain B, 2.05 A Crystal Structure Of Cysm From Mycobacterium
Tuberculosis - Open And Closed Conformations
Length = 326
Score = 155 bits (392), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 105/318 (33%), Positives = 156/318 (49%), Gaps = 18/318 (5%)
Query: 14 ELIGKTPLVYLNRIV-------DGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLI 66
+ +G TPLV L R+ DG R+ AKLE P S+ DR MI AE GL+
Sbjct: 12 QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIXDRPAVRMIEQAEADGLL 71
Query: 67 RPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPAR 126
RPG ++L EPTSGNTGI LA A KGYRLI MP + S+ERR +L +GA+++ +
Sbjct: 72 RPGATIL-EPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEG 130
Query: 127 GMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXXX 186
G AV A+E+ P+ +L Q+ NPAN HY TGPE+ +I V+
Sbjct: 131 GSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PEITHFVAGLGTT 189
Query: 187 XXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDET 246
++L+EH +K+ EP G + ++ + GF+P + D +L
Sbjct: 190 GTLMGTGRFLREHVANVKIVAAEPRYG-------EGVYALRNMDEGFVPELYDPEILTAR 242
Query: 247 VQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKL--IVVVFPSFGER 304
+ + +A+ + L EG+ GIS+G AG+ I +V G +
Sbjct: 243 YSVGAVDAVRRTRELVHTEGIFAGISTGAVLHAALGVGAGALAAGERADIALVVADAGWK 302
Query: 305 YLSSVLFESVKKEAESMV 322
YLS+ + +AE+ +
Sbjct: 303 YLSTGAYAGSLDDAETAL 320
>pdb|1WKV|A Chain A, Crystal Structure Of O-Phosphoserine Sulfhydrylase
pdb|1WKV|B Chain B, Crystal Structure Of O-Phosphoserine Sulfhydrylase
pdb|3VSA|A Chain A, Crystal Structure Of O-Phosphoserine Sulfhydrylase Without
Acetate
pdb|3VSA|B Chain B, Crystal Structure Of O-Phosphoserine Sulfhydrylase Without
Acetate
Length = 389
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 78/302 (25%), Positives = 133/302 (44%), Gaps = 31/302 (10%)
Query: 19 TPLVYLNRIVDGCVARIAAKLEMMEPCS-SVKDRIGYSMIADAE---EKGLIRPGESVLI 74
TPLV +R+ R+ KLE P S SVKDR +I+ EKG S++
Sbjct: 97 TPLVR-SRLQLPNGVRVWLKLEWYNPFSLSVKDRPAVEIISRLSRRVEKG------SLVA 149
Query: 75 EPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQK 134
+ TS N G+ L+ +A GYR + +P + +++ GA++++ A + +
Sbjct: 150 DATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAPSTVHLLPR 209
Query: 135 AEEIRDKTPNSYV-LQQFENPANPKIHYETTGPEIW---KGTGGKIDALVSXXXXXXXXX 190
++D +V + QF N AN + H T EI+ + G + +
Sbjct: 210 V--MKDSKNEGFVHVNQFYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTSGHMS 267
Query: 191 XXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDET---V 247
YL+ +P I+ V+P + + PG +++ G+L +N+LD +
Sbjct: 268 AAAFYLQSVDPSIRAVLVQPAQGDSI----PGIRRVE-------TGMLWINMLDISYTLA 316
Query: 248 QISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIVVVFPSFGERYLS 307
+++ EEA+E +A +GL++G S G + VVV P G +YLS
Sbjct: 317 EVTLEEAMEAVVEVARSDGLVIGPSGGAAVKALAKKAAEGDLEPGDYVVVVPDTGFKYLS 376
Query: 308 SV 309
V
Sbjct: 377 LV 378
>pdb|3VSC|A Chain A, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Phospho-L-Serine
pdb|3VSC|B Chain B, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Phospho-L-Serine
pdb|3VSD|A Chain A, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Acetyl-L-Serine
pdb|3VSD|B Chain B, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Acetyl-L-Serine
Length = 389
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 131/302 (43%), Gaps = 31/302 (10%)
Query: 19 TPLVYLNRIVDGCVARIAAKLEMMEPCS-SVKDRIGYSMIADAE---EKGLIRPGESVLI 74
TPLV +R+ R+ KLE P S SV DR +I+ EKG S++
Sbjct: 97 TPLVR-SRLQLPNGVRVWLKLEWYNPFSLSVADRPAVEIISRLSRRVEKG------SLVA 149
Query: 75 EPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQK 134
+ TS N G+ L+ +A GYR + +P + +++ GA++++ A + +
Sbjct: 150 DATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAPSTVHLLPR 209
Query: 135 AEEIRDKTPNSYV-LQQFENPANPKIHYETTGPEIW---KGTGGKIDALVSXXXXXXXXX 190
++D +V + QF N AN + H T EI+ + G + +
Sbjct: 210 V--MKDSKNEGFVHVNQFYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTSGHMS 267
Query: 191 XXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLD---ETV 247
YL+ +P I+ V+P + + PG +++ G+L +N+LD
Sbjct: 268 AAAFYLQSVDPSIRAVLVQPAQGDSI----PGIRRVE-------TGMLWINMLDISYTLA 316
Query: 248 QISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIVVVFPSFGERYLS 307
+++ EEA+E +A +GL++G S G + VVV P G +YLS
Sbjct: 317 EVTLEEAMEAVVEVARSDGLVIGPSGGAAVKALAKKAAEGDLEPGDYVVVVPDTGFKYLS 376
Query: 308 SV 309
V
Sbjct: 377 LV 378
>pdb|1TDJ|A Chain A, Threonine Deaminase (Biosynthetic) From E. Coli
Length = 514
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 102/249 (40%), Gaps = 10/249 (4%)
Query: 5 KSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKG 64
++V+ V E TPL + ++ I K E +P S K R Y+M+A E+
Sbjct: 18 RAVLRAPVYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEE- 76
Query: 65 LIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 124
+ V I ++GN G+AF +A G + +I MP + + + + FG E++L
Sbjct: 77 --QKAHGV-ITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLH-- 131
Query: 125 ARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXX 184
A KA E+ + ++V F++P I + T +D +
Sbjct: 132 GANFDEAKAKAIELSQQQGFTWV-PPFDHPM--VIAGQGTLALELLQQDAHLDRVFVPVG 188
Query: 185 XXXXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAG-FIPGVLDVNLL 243
+K+ P+IK+ VE +SA L H + G F GV +
Sbjct: 189 GGGLAAGVAVLIKQLMPQIKVIAVEAEDSACLKAALDAGHPVDLPRVGLFAEGVAVKRIG 248
Query: 244 DETVQISSE 252
DET ++ E
Sbjct: 249 DETFRLCQE 257
>pdb|4D9M|A Chain A, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With Aminoacrylate-Plp
Azomethine Reaction Intermediate
pdb|4D9M|B Chain B, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With Aminoacrylate-Plp
Azomethine Reaction Intermediate
Length = 398
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 77 TSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 123
T GN G G+A+ A G +I MP + ER +L GAE ++TD
Sbjct: 119 TDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTD 165
>pdb|4D9K|A Chain A, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|D Chain D, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|B Chain B, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|C Chain C, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
Length = 398
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 77 TSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 123
T GN G G+A+ A G +I MP + ER +L GAE ++TD
Sbjct: 119 TDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTD 165
>pdb|4D9I|A Chain A, Crystal Structure Of Holo Diaminopropionate Ammonia Lyase
From Escherichia Coli
pdb|4D9I|B Chain B, Crystal Structure Of Holo Diaminopropionate Ammonia Lyase
From Escherichia Coli
pdb|4D9N|A Chain A, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With D-Serine
pdb|4D9N|B Chain B, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With D-Serine
Length = 398
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 77 TSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 123
T GN G G+A+ A G +I MP + ER +L GAE ++TD
Sbjct: 119 TDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTD 165
>pdb|4D9G|A Chain A, Crystal Structure Of Selenomethionine Incorporated Holo
Diaminopropionate Ammonia Lyase From Escherichia Coli
pdb|4D9G|B Chain B, Crystal Structure Of Selenomethionine Incorporated Holo
Diaminopropionate Ammonia Lyase From Escherichia Coli
Length = 398
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 77 TSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 123
T GN G G+A+ A G +I P + ER +L GAE ++TD
Sbjct: 119 TDGNHGRGVAWAAQQLGQNAVIYXPKGSAQERVDAILNLGAECIVTD 165
>pdb|3R0Z|A Chain A, Crystal Structure Of Apo D-Serine Deaminase From
Salmonella Typhimurium
Length = 448
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 62/143 (43%), Gaps = 24/143 (16%)
Query: 47 SVKDRIG-YSMIADAE----EKGLIRPGE--SVLIEP--------------TSGNTGIGL 85
S+K R G Y ++ AE E GL+ + SVL+ P ++GN G+ +
Sbjct: 114 SIKARGGIYEVLTHAEKLALEAGLLTTDDDYSVLLSPEFKQFFSQYSIAVGSTGNLGLSI 173
Query: 86 AFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNS 145
M+A G+++ + M A ++ L + G +V + G+ AV++ + PN
Sbjct: 174 GIMSACIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEDDYGV--AVEQGRKAAQSDPNC 231
Query: 146 YVLQQFENPANPKIHYETTGPEI 168
+ + EN + Y G +
Sbjct: 232 FFIDD-ENSRTLFLGYAVAGQRL 253
>pdb|3L6B|A Chain A, X-Ray Crystal Structure Of Human Serine Racemase In
Complex Malonate A Potent Inhibitor
Length = 346
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 38 KLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLI 97
K E+ + S K R + + L R ++V+ +SGN G L + A +G
Sbjct: 45 KCELFQKTGSFKIRGALNAVRSLVPDALERKPKAVVTH-SSGNHGQALTYAAKLEGIPAY 103
Query: 98 ITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQK 134
I +P + +++ + A+GA +V +P+ + V K
Sbjct: 104 IVVPQTAPDCKKLAIQAYGASIVYCEPSDESRENVAK 140
>pdb|3L6R|A Chain A, The Structure Of Mammalian Serine Racemase: Evidence For
Conformational Changes Upon Inhibitor Binding
Length = 346
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 55 SMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLA 114
S++ DA E+ +P ++ +SGN G L + A +G I +P + +++ + A
Sbjct: 66 SLVPDALER---KP--KAVVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQA 120
Query: 115 FGAELVLTDPARGMKGAVQK 134
+GA +V +P+ + V K
Sbjct: 121 YGASIVYCEPSDESRENVAK 140
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 33.1 bits (74), Expect = 0.21, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 54 YSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLL 113
YS++ +G ++PGESVLI SG G +A ++G R+ T+ S E+R L
Sbjct: 1657 YSLVV----RGRMQPGESVLIHSGSGGVGQAAIAIALSRGCRVFTTVG---SAEKRAYLQ 1709
Query: 114 A 114
A
Sbjct: 1710 A 1710
>pdb|3HMK|A Chain A, Crystal Structure Of Serine Racemase
pdb|3HMK|B Chain B, Crystal Structure Of Serine Racemase
pdb|3L6C|A Chain A, X-Ray Crystal Structure Of Rat Serine Racemase In Complex
Wi Malonate A Potent Inhibitor
pdb|3L6C|B Chain B, X-Ray Crystal Structure Of Rat Serine Racemase In Complex
Wi Malonate A Potent Inhibitor
Length = 339
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 13/94 (13%)
Query: 38 KLEMMEPCSSVKDRIGYSMIADAEEKGLI------RPGESVLIEPTSGNTGIGLAFMAAA 91
K E+ + S K R + I +GLI +P ++ +SGN G L + A
Sbjct: 45 KCELFQKTGSFKIRGALNAI-----RGLIPDTLEGKP--KAVVTHSSGNHGQALTYAAKL 97
Query: 92 KGYRLIITMPASMSLERRMVLLAFGAELVLTDPA 125
+G I +P + +++ + A+GA +V ++P+
Sbjct: 98 EGIPAYIVVPQTAPNCKKLAIQAYGASIVYSEPS 131
>pdb|1ZSY|A Chain A, The Structure Of Human Mitochondrial 2-Enoyl Thioester
Reductase (Cgi- 63)
Length = 357
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 18/87 (20%)
Query: 42 MEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAF--MAAAKGYRLIIT 99
+ PC++ Y M+ D E+ ++PG+SV+ + N+G+G A +AAA G R I
Sbjct: 150 VNPCTA------YRMLMDFEQ---LQPGDSVI--QNASNSGVGQAVIQIAAALGLRTINV 198
Query: 100 M---PASMSLERRMVLLAFGAELVLTD 123
+ P L R L + GAE V+T+
Sbjct: 199 VRDRPDIQKLSDR--LKSLGAEHVITE 223
>pdb|2VCY|A Chain A, Crystal Structure Of 2-Enoyl Thioester Reductase Of Human
Fas Ii
pdb|2VCY|B Chain B, Crystal Structure Of 2-Enoyl Thioester Reductase Of Human
Fas Ii
Length = 344
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 18/87 (20%)
Query: 42 MEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAF--MAAAKGYRLIIT 99
+ PC++ Y M+ D E+ ++PG+SV+ + N+G+G A +AAA G R I
Sbjct: 137 VNPCTA------YRMLMDFEQ---LQPGDSVI--QNASNSGVGQAVIQIAAALGLRTINV 185
Query: 100 M---PASMSLERRMVLLAFGAELVLTD 123
+ P L R L + GAE V+T+
Sbjct: 186 VRDRPDIQKLSDR--LKSLGAEHVITE 210
>pdb|3SS7|X Chain X, Crystal Structure Of Holo D-Serine Dehydratase From
Escherichia Coli At 1.55 A Resolution
pdb|3SS9|X Chain X, Crystal Structure Of Holo D-Serine Dehydratase From
Escherichia Coli At 1.97 A Resolution
Length = 442
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 62/143 (43%), Gaps = 24/143 (16%)
Query: 47 SVKDRIG-YSMIADAE----EKGLIRPGE--SVLIEP--------------TSGNTGIGL 85
S+K R G Y ++A AE E GL+ + S L+ P ++GN G+ +
Sbjct: 116 SIKARGGIYEVLAHAEKLALEAGLLTLDDDYSKLLSPEFKQFFSQYSIAVGSTGNLGLSI 175
Query: 86 AFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNS 145
M+A G+++ + M A ++ L + G +V + G+ AV++ + PN
Sbjct: 176 GIMSARIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEQDYGV--AVEEGRKAAQSDPNC 233
Query: 146 YVLQQFENPANPKIHYETTGPEI 168
+ + EN + Y G +
Sbjct: 234 FFIDD-ENSRTLFLGYSVAGQRL 255
>pdb|1VE5|A Chain A, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|B Chain B, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|C Chain C, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|D Chain D, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
Length = 311
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 73 LIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAV 132
L+ +SGN G+A+ A G + ++ MP S ++ A+GAE+V D K
Sbjct: 68 LLAVSSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVV--DRGVTAKNRE 125
Query: 133 QKAEEIRDKTPNSYVLQQFENP 154
+ A ++++T ++ F++P
Sbjct: 126 EVARALQEET-GYALIHPFDDP 146
>pdb|2D1F|A Chain A, Structure Of Mycobacterium Tuberculosis Threonine Synthase
pdb|2D1F|B Chain B, Structure Of Mycobacterium Tuberculosis Threonine Synthase
Length = 360
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 58/147 (39%), Gaps = 12/147 (8%)
Query: 12 VTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGES 71
VT L G TPL+ + I K+E + P S KDR + DA + G+
Sbjct: 32 VTLLEGGTPLIAATNLSKQTGCTIHLKVEGLNPTGSFKDRGMTMAVTDA-----LAHGQR 86
Query: 72 VLIEPTSGNTGIGLAFMAAAKGYRLIITMP-ASMSLERRMVLLAFGAELVLTDPARGMKG 130
++ ++GNT A AA G + +P +++ + + GA+++ D G
Sbjct: 87 AVLCASTGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQID------G 140
Query: 131 AVQKAEEIRDKTPNSYVLQQFENPANP 157
E+ K + N NP
Sbjct: 141 NFDDCLELARKMAADFPTISLVNSVNP 167
>pdb|3UOG|A Chain A, Crystal Structure Of Putative Alcohol Dehydrogenase From
Sinorhizobium Meliloti 1021
pdb|3UOG|B Chain B, Crystal Structure Of Putative Alcohol Dehydrogenase From
Sinorhizobium Meliloti 1021
Length = 363
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLA 114
EKG +R G+ V+++ T G GL +A A G +I+T + L+R L A
Sbjct: 183 EKGHLRAGDRVVVQGTGGVALFGLQ-IAKATGAEVIVTSSSREKLDRAFALGA 234
>pdb|3R0X|A Chain A, Crystal Structure Of Selenomethionine Incorporated Apo
D-Serine Deaminase From Salmonella Tyhimurium
Length = 448
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 60/143 (41%), Gaps = 24/143 (16%)
Query: 47 SVKDRIG-YSMIADAE----EKGLIRPGE--SVLIEP--------------TSGNTGIGL 85
S+K R G Y ++ AE E GL+ + SVL+ P ++GN G+ +
Sbjct: 114 SIKARGGIYEVLTHAEKLALEAGLLTTDDDYSVLLSPEFKQFFSQYSIAVGSTGNLGLSI 173
Query: 86 AFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNS 145
+A G+++ + A ++ L + G +V + G+ AV++ + PN
Sbjct: 174 GIXSACIGFKVTVHXSADARAWKKAKLRSHGVTVVEYEDDYGV--AVEQGRKAAQSDPNC 231
Query: 146 YVLQQFENPANPKIHYETTGPEI 168
+ + EN + Y G +
Sbjct: 232 FFIDD-ENSRTLFLGYAVAGQRL 253
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
pdb|3KTT|B Chain B, Atomic Model Of Bovine Tric Cct2(Beta) Subunit Derived
From A 4.0 Angstrom Cryo-Em Map
pdb|4A0O|A Chain A, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|B Chain B, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|C Chain C, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|D Chain D, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|E Chain E, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|F Chain F, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|G Chain G, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|H Chain H, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|I Chain I, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|J Chain J, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|K Chain K, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|L Chain L, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|M Chain M, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|N Chain N, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|O Chain O, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|P Chain P, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0V|A Chain A, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|B Chain B, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|C Chain C, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|D Chain D, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|E Chain E, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|F Chain F, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|G Chain G, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|H Chain H, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|I Chain I, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|J Chain J, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|K Chain K, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|L Chain L, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|M Chain M, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|N Chain N, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|O Chain O, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|P Chain P, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0W|A Chain A, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|B Chain B, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|C Chain C, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|D Chain D, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|E Chain E, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|F Chain F, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|G Chain G, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|H Chain H, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|I Chain I, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|J Chain J, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|K Chain K, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|L Chain L, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|M Chain M, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|N Chain N, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|O Chain O, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|P Chain P, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A13|A Chain A, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|B Chain B, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|C Chain C, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|D Chain D, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|E Chain E, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|F Chain F, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|G Chain G, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|H Chain H, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|I Chain I, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|J Chain J, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|K Chain K, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|L Chain L, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|M Chain M, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|N Chain N, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|O Chain O, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|P Chain P, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
Length = 513
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 194 KYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVN-LLDETVQISSE 252
K L H VE V SG H I+ +G LD LLD+ + ++
Sbjct: 157 KLLTHHKDHFTKLAVEAVLRLKGSGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVNQP 216
Query: 253 EAIETAKLLALKEGL 267
+ IE AK+L G+
Sbjct: 217 KRIENAKILIANTGM 231
>pdb|1YB5|A Chain A, Crystal Structure Of Human Zeta-crystallin With Bound Nadp
pdb|1YB5|B Chain B, Crystal Structure Of Human Zeta-crystallin With Bound Nadp
Length = 351
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 66 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVL 112
++ GESVL+ SG G+GLA A+ Y L I A +++VL
Sbjct: 168 VKAGESVLVHGASG--GVGLAACQIARAYGLKILGTAGTEEGQKIVL 212
>pdb|2DH5|A Chain A, Crystal Structure Of E. Coli Holo-Trpb
pdb|2DH6|A Chain A, Crystal Structure Of E. Coli Apo-trpb
Length = 397
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 31/65 (47%)
Query: 245 ETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXXKRPENAGKLIVVVFPSFGER 304
+ V I+ +EA+E K L L EG++ + S + + +L+VV G++
Sbjct: 323 DYVSITDDEALEAFKTLCLHEGIIPALESSHALAHALKMMRENPDKEQLLVVNLSGRGDK 382
Query: 305 YLSSV 309
+ +V
Sbjct: 383 DIFTV 387
>pdb|1PQW|A Chain A, Putative Enoyl Reductase Domain Of Polyketide Synthase
pdb|1PQW|B Chain B, Putative Enoyl Reductase Domain Of Polyketide Synthase
Length = 198
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Query: 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121
E G + PGE VLI +G G+ +A G R+ T + S +R +L G E V
Sbjct: 32 EVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTT---AGSDAKREMLSRLGVEYV- 87
Query: 122 TDPARGMKGAVQKAEEIRDKT 142
G +V A+EI + T
Sbjct: 88 -----GDSRSVDFADEILELT 103
>pdb|3IAU|A Chain A, The Structure Of The Processed Form Of Threonine Deaminase
Isoform 2 From Solanum Lycopersicum
pdb|3IAU|B Chain B, The Structure Of The Processed Form Of Threonine Deaminase
Isoform 2 From Solanum Lycopersicum
Length = 366
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 54/257 (21%), Positives = 100/257 (38%), Gaps = 9/257 (3%)
Query: 6 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGL 65
++A V ++ ++PL ++ D K E + S R Y+M+++ + L
Sbjct: 48 DILASPVYDVAIESPLELAEKLSDRLGVNFYIKREDKQRVFSFXLRGAYNMMSNLSREEL 107
Query: 66 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA 125
+ +I ++GN G+A I MP + + + A G ++VL
Sbjct: 108 ----DKGVITASAGNHAQGVALAGQRLNCVAKIVMPTTTPQIKIDAVRALGGDVVLY--G 161
Query: 126 RGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSXXXX 185
+ A A E+ +K Y+ F++P K T G EI + I A+
Sbjct: 162 KTFDEAQTHALELSEKDGLKYI-PPFDDPGVIKGQ-GTIGTEINRQLK-DIHAVFIPVGG 218
Query: 186 XXXXXXXXKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDE 245
+ K+ P K+ GVEP +A ++ H+++ + V L+ E
Sbjct: 219 GGLIAGVATFFKQIAPNTKIIGVEPYGAASMTLSLHEGHRVKLSNVDTFADGVAVALVGE 278
Query: 246 TVQISSEEAIETAKLLA 262
+E I+ L+A
Sbjct: 279 YTFAKCQELIDGMVLVA 295
>pdb|2Z1T|A Chain A, Crystal Structure Of Hydrogenase Maturation Protein Hype
pdb|2Z1U|A Chain A, Crystal Structure Of Hydrogenase Maturation Protein Hype
In Complex With Atp
Length = 343
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 52 IGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRL---IITMPASMSLER 108
IG ++ A RPG+++LI + G+ GL ++ +G + + AS++
Sbjct: 148 IGEILVDPAPSGDRARPGDAILISGSMGDH--GLTILSQRQGLNFAADVCSDSASLNRVV 205
Query: 109 RMVLLAFGAELVLTDPARG 127
++L G VL DP RG
Sbjct: 206 EKLVLEVGDIHVLRDPTRG 224
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.135 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,859,826
Number of Sequences: 62578
Number of extensions: 335485
Number of successful extensions: 664
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 546
Number of HSP's gapped (non-prelim): 65
length of query: 325
length of database: 14,973,337
effective HSP length: 99
effective length of query: 226
effective length of database: 8,778,115
effective search space: 1983853990
effective search space used: 1983853990
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)