Query 020528
Match_columns 325
No_of_seqs 163 out of 1230
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 03:06:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020528.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020528hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02565 cysteine synthase 100.0 3.1E-72 6.8E-77 515.1 38.2 321 5-325 2-322 (322)
2 COG0031 CysK Cysteine synthase 100.0 1.6E-70 3.5E-75 486.4 34.8 295 10-307 3-299 (300)
3 PLN02556 cysteine synthase/L-3 100.0 8.4E-70 1.8E-74 505.9 36.9 318 8-325 49-366 (368)
4 PLN00011 cysteine synthase 100.0 1.3E-67 2.7E-72 486.1 39.2 318 7-324 6-323 (323)
5 PLN03013 cysteine synthase 100.0 9.8E-68 2.1E-72 494.1 34.4 302 8-309 113-415 (429)
6 TIGR01136 cysKM cysteine synth 100.0 1.5E-65 3.2E-70 468.7 35.7 297 13-310 2-298 (299)
7 PRK11761 cysM cysteine synthas 100.0 2.6E-65 5.7E-70 465.0 34.0 294 8-312 2-295 (296)
8 PLN02356 phosphateglycerate ki 100.0 5.4E-65 1.2E-69 475.6 36.0 316 5-323 40-413 (423)
9 PRK10717 cysteine synthase A; 100.0 1.2E-64 2.5E-69 468.6 37.0 310 8-319 3-325 (330)
10 TIGR01139 cysK cysteine syntha 100.0 2.1E-64 4.4E-69 461.1 35.5 294 13-309 2-296 (298)
11 KOG1252 Cystathionine beta-syn 100.0 6.4E-66 1.4E-70 454.0 24.5 314 8-321 42-360 (362)
12 TIGR01138 cysM cysteine syntha 100.0 5.6E-64 1.2E-68 455.2 34.6 288 12-310 2-289 (290)
13 TIGR01137 cysta_beta cystathio 100.0 1.4E-62 3E-67 474.2 35.0 307 10-318 3-318 (454)
14 cd01561 CBS_like CBS_like: Thi 100.0 4.2E-62 9.1E-67 444.5 36.0 289 17-307 1-291 (291)
15 COG1171 IlvA Threonine dehydra 100.0 1.9E-61 4.1E-66 435.8 27.0 301 6-317 13-326 (347)
16 PRK12483 threonine dehydratase 100.0 9.7E-60 2.1E-64 453.0 32.3 297 10-317 29-337 (521)
17 PLN02970 serine racemase 100.0 5.1E-60 1.1E-64 436.4 28.9 294 5-308 14-321 (328)
18 PRK08638 threonine dehydratase 100.0 1.4E-59 3E-64 433.2 29.2 299 5-316 14-325 (333)
19 PRK08526 threonine dehydratase 100.0 9.4E-60 2E-64 443.8 28.5 299 5-316 7-317 (403)
20 PRK06352 threonine synthase; V 100.0 6.1E-60 1.3E-64 439.2 26.7 289 10-309 20-324 (351)
21 PRK06608 threonine dehydratase 100.0 9.5E-60 2.1E-64 435.2 27.2 290 5-305 10-311 (338)
22 cd06448 L-Ser-dehyd Serine deh 100.0 6.3E-59 1.4E-63 426.8 30.2 293 18-316 1-314 (316)
23 PRK08197 threonine synthase; V 100.0 3.6E-59 7.8E-64 440.9 28.8 289 11-308 72-386 (394)
24 PRK07048 serine/threonine dehy 100.0 4.2E-59 9E-64 430.0 27.8 292 5-308 11-314 (321)
25 PRK06382 threonine dehydratase 100.0 3.9E-59 8.4E-64 442.0 28.3 290 6-307 13-314 (406)
26 PLN02550 threonine dehydratase 100.0 9.4E-59 2E-63 448.4 31.1 293 11-314 102-406 (591)
27 PRK06110 hypothetical protein; 100.0 5.4E-59 1.2E-63 429.0 27.2 298 6-317 9-318 (322)
28 PRK07476 eutB threonine dehydr 100.0 8.7E-59 1.9E-63 427.7 28.4 299 5-317 6-318 (322)
29 PRK08198 threonine dehydratase 100.0 1.3E-58 2.9E-63 439.3 30.1 291 6-308 10-312 (404)
30 TIGR02079 THD1 threonine dehyd 100.0 1.1E-58 2.4E-63 438.4 28.8 299 6-317 4-317 (409)
31 PRK06721 threonine synthase; R 100.0 2.5E-58 5.4E-63 428.8 30.6 296 8-314 18-329 (352)
32 PRK07591 threonine synthase; V 100.0 1.5E-58 3.2E-63 439.0 29.2 290 11-308 82-396 (421)
33 TIGR01124 ilvA_2Cterm threonin 100.0 2.7E-58 5.9E-63 443.4 31.3 296 9-315 8-315 (499)
34 PRK07334 threonine dehydratase 100.0 6.2E-59 1.3E-63 440.5 26.2 297 5-315 10-316 (403)
35 PRK08639 threonine dehydratase 100.0 1.5E-58 3.2E-63 439.6 28.4 301 5-316 12-327 (420)
36 TIGR02991 ectoine_eutB ectoine 100.0 3.3E-58 7.1E-63 422.3 29.6 285 6-302 7-305 (317)
37 PRK06815 hypothetical protein; 100.0 1.4E-58 3.1E-63 425.4 27.1 289 5-304 7-308 (317)
38 PRK07409 threonine synthase; V 100.0 4E-58 8.7E-63 428.3 29.5 289 9-308 22-327 (353)
39 PRK02991 D-serine dehydratase; 100.0 5.6E-58 1.2E-62 433.7 30.2 300 15-319 72-438 (441)
40 PRK08813 threonine dehydratase 100.0 7.2E-58 1.6E-62 420.9 30.1 284 6-317 27-321 (349)
41 PLN02569 threonine synthase 100.0 7.3E-58 1.6E-62 437.5 30.9 292 10-308 125-444 (484)
42 PRK09224 threonine dehydratase 100.0 1.6E-57 3.5E-62 439.9 31.7 297 9-316 11-319 (504)
43 TIGR01127 ilvA_1Cterm threonin 100.0 6.1E-58 1.3E-62 431.7 27.8 284 19-316 1-296 (380)
44 cd01562 Thr-dehyd Threonine de 100.0 6E-58 1.3E-62 420.1 27.0 288 4-302 3-302 (304)
45 PRK08329 threonine synthase; V 100.0 2E-57 4.3E-62 422.0 30.6 278 11-306 57-347 (347)
46 PRK06260 threonine synthase; V 100.0 2.8E-57 6.1E-62 428.4 29.0 288 10-308 59-373 (397)
47 PRK08246 threonine dehydratase 100.0 3.3E-57 7.1E-62 414.6 27.7 286 5-307 10-307 (310)
48 cd01563 Thr-synth_1 Threonine 100.0 5.9E-57 1.3E-61 416.7 29.4 286 10-305 14-324 (324)
49 PRK06450 threonine synthase; V 100.0 1.4E-56 2.9E-61 413.5 28.4 266 11-306 51-338 (338)
50 TIGR02035 D_Ser_am_lyase D-ser 100.0 8.1E-56 1.8E-60 417.4 31.9 287 15-304 67-422 (431)
51 cd06447 D-Ser-dehyd D-Serine d 100.0 4.8E-56 1E-60 415.7 29.9 269 16-287 50-375 (404)
52 PRK06381 threonine synthase; V 100.0 5.2E-56 1.1E-60 409.4 29.7 280 13-301 10-317 (319)
53 KOG1250 Threonine/serine dehyd 100.0 4E-56 8.7E-61 397.9 25.0 290 8-307 56-357 (457)
54 PRK05638 threonine synthase; V 100.0 2.5E-55 5.3E-60 420.3 30.4 283 11-306 59-359 (442)
55 PRK08206 diaminopropionate amm 100.0 1.3E-55 2.8E-60 415.9 27.7 307 6-319 30-397 (399)
56 KOG1481 Cysteine synthase [Ami 100.0 3.5E-55 7.5E-60 375.3 23.2 313 8-323 39-379 (391)
57 TIGR00260 thrC threonine synth 100.0 2.5E-54 5.5E-59 399.8 27.7 289 9-307 14-328 (328)
58 cd00640 Trp-synth-beta_II Tryp 100.0 5E-53 1.1E-57 375.7 31.3 243 19-301 1-244 (244)
59 KOG1251 Serine racemase [Signa 100.0 2.1E-54 4.6E-59 364.2 20.3 294 3-308 10-315 (323)
60 cd06446 Trp-synth_B Tryptophan 100.0 4E-53 8.6E-58 395.7 30.2 294 8-308 23-364 (365)
61 PRK13028 tryptophan synthase s 100.0 8.6E-53 1.9E-57 393.6 32.0 294 10-309 53-393 (402)
62 PRK04346 tryptophan synthase s 100.0 1.9E-52 4.2E-57 390.6 30.7 293 10-308 49-388 (397)
63 TIGR00263 trpB tryptophan synt 100.0 2E-52 4.4E-57 392.8 30.5 293 10-308 41-380 (385)
64 PLN02618 tryptophan synthase, 100.0 3.4E-52 7.4E-57 389.5 30.7 296 8-309 55-402 (410)
65 TIGR01415 trpB_rel pyridoxal-p 100.0 9E-52 1.9E-56 389.9 33.3 297 8-315 58-416 (419)
66 TIGR03844 cysteate_syn cysteat 100.0 8.7E-53 1.9E-57 395.2 25.0 287 13-308 57-385 (398)
67 TIGR01747 diampropi_NH3ly diam 100.0 8.3E-52 1.8E-56 386.2 27.1 297 7-308 12-369 (376)
68 PRK12391 tryptophan synthase s 100.0 1E-50 2.2E-55 383.3 32.6 295 13-315 72-425 (427)
69 PRK13802 bifunctional indole-3 100.0 9.5E-51 2.1E-55 399.1 32.4 295 10-309 317-669 (695)
70 TIGR03528 2_3_DAP_am_ly diamin 100.0 9.4E-51 2E-55 381.5 27.1 290 15-308 38-388 (396)
71 cd06449 ACCD Aminocyclopropane 100.0 6.1E-51 1.3E-55 373.6 23.8 277 19-301 1-307 (307)
72 TIGR01275 ACC_deam_rel pyridox 100.0 5.2E-51 1.1E-55 374.9 23.1 281 15-302 4-301 (311)
73 PRK12390 1-aminocyclopropane-1 100.0 8.1E-51 1.8E-55 377.1 23.8 288 9-301 6-324 (337)
74 PRK03910 D-cysteine desulfhydr 100.0 8.9E-51 1.9E-55 375.9 23.1 288 9-303 6-319 (331)
75 PF00291 PALP: Pyridoxal-phosp 100.0 2.7E-50 5.9E-55 369.6 24.7 277 12-300 1-306 (306)
76 TIGR01274 ACC_deam 1-aminocycl 100.0 6.5E-50 1.4E-54 370.9 25.0 287 9-301 5-323 (337)
77 PRK13803 bifunctional phosphor 100.0 8.3E-49 1.8E-53 386.3 30.9 293 10-308 262-600 (610)
78 PRK14045 1-aminocyclopropane-1 100.0 4.8E-48 1E-52 357.1 22.4 286 8-302 11-315 (329)
79 COG0498 ThrC Threonine synthas 100.0 2.7E-47 5.9E-52 354.3 24.9 288 11-308 69-378 (411)
80 COG0133 TrpB Tryptophan syntha 100.0 1.3E-37 2.7E-42 272.0 24.0 294 10-309 47-386 (396)
81 cd01560 Thr-synth_2 Threonine 100.0 1.2E-36 2.7E-41 289.3 26.7 273 19-308 88-421 (460)
82 PRK09225 threonine synthase; V 100.0 1E-36 2.2E-41 289.8 25.2 274 18-309 88-418 (462)
83 COG2515 Acd 1-aminocyclopropan 100.0 1.3E-34 2.7E-39 252.9 19.2 289 8-302 5-313 (323)
84 COG1350 Predicted alternative 100.0 2.4E-33 5.2E-38 245.7 23.6 295 14-317 73-428 (432)
85 KOG1395 Tryptophan synthase be 100.0 7.2E-33 1.6E-37 244.6 20.9 294 9-308 112-453 (477)
86 COG3048 DsdA D-serine dehydrat 100.0 6.9E-28 1.5E-32 209.7 17.8 287 14-304 74-430 (443)
87 KOG2616 Pyridoxalphosphate-dep 96.3 0.007 1.5E-07 51.6 4.9 63 246-309 148-210 (266)
88 PF05368 NmrA: NmrA-like famil 87.4 11 0.00024 32.5 11.5 50 73-123 2-51 (233)
89 KOG0025 Zn2+-binding dehydroge 86.6 6 0.00013 35.9 9.0 86 34-123 124-216 (354)
90 PF03808 Glyco_tran_WecB: Glyc 85.2 8.1 0.00018 32.1 9.0 120 81-208 12-133 (172)
91 TIGR03201 dearomat_had 6-hydro 84.6 14 0.0003 34.3 11.3 59 60-122 158-216 (349)
92 PRK03562 glutathione-regulated 84.3 17 0.00037 36.9 12.4 96 71-208 401-497 (621)
93 PRK03659 glutathione-regulated 84.3 18 0.00039 36.6 12.6 97 71-209 401-498 (601)
94 cd08230 glucose_DH Glucose deh 84.2 8 0.00017 35.9 9.5 52 67-119 171-222 (355)
95 cd08294 leukotriene_B4_DH_like 84.0 17 0.00038 32.9 11.6 57 62-121 137-193 (329)
96 COG0604 Qor NADPH:quinone redu 83.4 14 0.00031 34.1 10.6 58 62-122 136-193 (326)
97 TIGR02819 fdhA_non_GSH formald 83.0 18 0.00038 34.4 11.4 56 61-119 178-233 (393)
98 PRK10669 putative cation:proto 82.4 24 0.00053 35.2 12.6 97 71-209 418-515 (558)
99 TIGR00670 asp_carb_tr aspartat 82.0 9.4 0.0002 35.0 8.7 61 62-123 144-208 (301)
100 PRK09424 pntA NAD(P) transhydr 80.7 40 0.00087 33.3 13.0 50 71-123 166-215 (509)
101 PRK12823 benD 1,6-dihydroxycyc 80.0 19 0.0004 31.5 9.9 72 70-141 9-81 (260)
102 cd06533 Glyco_transf_WecG_TagA 79.9 17 0.00037 30.2 9.0 120 81-208 10-131 (171)
103 TIGR03366 HpnZ_proposed putati 79.5 15 0.00033 32.7 9.3 57 60-119 112-168 (280)
104 COG1063 Tdh Threonine dehydrog 79.3 55 0.0012 30.5 14.4 50 72-123 171-221 (350)
105 COG2085 Predicted dinucleotide 79.2 41 0.00089 29.0 13.5 33 71-103 2-34 (211)
106 cd01075 NAD_bind_Leu_Phe_Val_D 79.2 24 0.00052 30.1 9.9 50 50-99 6-57 (200)
107 cd08274 MDR9 Medium chain dehy 78.4 22 0.00048 32.6 10.2 56 60-119 169-224 (350)
108 PF00070 Pyr_redox: Pyridine n 77.7 19 0.00042 25.3 7.6 49 73-121 2-59 (80)
109 cd08295 double_bond_reductase_ 77.1 36 0.00078 31.2 11.2 55 62-119 145-200 (338)
110 COG0800 Eda 2-keto-3-deoxy-6-p 76.7 49 0.0011 28.6 11.4 90 52-153 26-115 (211)
111 TIGR02825 B4_12hDH leukotriene 76.7 20 0.00044 32.6 9.4 57 62-121 132-188 (325)
112 PF00106 adh_short: short chai 75.7 26 0.00057 28.0 9.0 54 71-124 2-59 (167)
113 PRK13656 trans-2-enoyl-CoA red 75.6 54 0.0012 31.3 11.7 57 41-100 14-73 (398)
114 PF01210 NAD_Gly3P_dh_N: NAD-d 75.6 6.7 0.00014 32.0 5.2 42 73-117 2-43 (157)
115 cd08256 Zn_ADH2 Alcohol dehydr 75.1 43 0.00093 30.8 11.2 57 61-120 167-223 (350)
116 cd08293 PTGR2 Prostaglandin re 75.0 47 0.001 30.3 11.4 57 62-121 146-206 (345)
117 TIGR03451 mycoS_dep_FDH mycoth 74.8 34 0.00074 31.7 10.5 56 61-119 169-224 (358)
118 PLN03154 putative allyl alcoho 74.6 48 0.001 30.7 11.4 57 62-121 152-209 (348)
119 COG0078 ArgF Ornithine carbamo 74.6 20 0.00042 32.8 8.2 56 69-124 153-214 (310)
120 cd08233 butanediol_DH_like (2R 74.4 46 0.001 30.6 11.2 57 61-120 165-221 (351)
121 COG2130 Putative NADP-dependen 74.0 31 0.00067 31.6 9.2 57 61-120 143-200 (340)
122 PF01041 DegT_DnrJ_EryC1: DegT 73.8 7.6 0.00017 36.4 5.8 55 71-125 41-95 (363)
123 COG1064 AdhP Zn-dependent alco 73.6 22 0.00048 33.1 8.5 61 59-123 157-217 (339)
124 PRK09880 L-idonate 5-dehydroge 73.3 33 0.00073 31.6 10.0 58 61-121 162-219 (343)
125 cd08281 liver_ADH_like1 Zinc-d 73.1 41 0.00088 31.4 10.6 55 62-119 185-239 (371)
126 cd08292 ETR_like_2 2-enoyl thi 73.0 44 0.00094 30.1 10.6 55 61-118 132-186 (324)
127 TIGR01064 pyruv_kin pyruvate k 72.8 94 0.002 30.4 13.2 123 85-213 262-407 (473)
128 PRK12481 2-deoxy-D-gluconate 3 72.7 34 0.00074 29.8 9.5 71 70-141 9-80 (251)
129 PRK08703 short chain dehydroge 72.5 46 0.00099 28.6 10.2 31 70-100 7-37 (239)
130 TIGR02822 adh_fam_2 zinc-bindi 72.0 23 0.00049 32.6 8.5 57 60-120 157-213 (329)
131 PRK08993 2-deoxy-D-gluconate 3 71.8 48 0.001 28.9 10.2 54 70-124 11-64 (253)
132 PRK08628 short chain dehydroge 71.7 36 0.00077 29.6 9.4 55 70-124 8-62 (258)
133 PRK12743 oxidoreductase; Provi 71.5 32 0.0007 30.0 9.1 71 71-141 4-77 (256)
134 PRK06935 2-deoxy-D-gluconate 3 71.5 37 0.0008 29.6 9.4 72 70-141 16-88 (258)
135 PF00107 ADH_zinc_N: Zinc-bind 71.4 17 0.00037 28.0 6.5 32 175-209 58-89 (130)
136 PF00185 OTCace: Aspartate/orn 71.1 22 0.00047 29.1 7.2 45 79-123 13-65 (158)
137 KOG0023 Alcohol dehydrogenase, 71.0 25 0.00054 32.5 8.0 62 59-124 173-234 (360)
138 PF00107 ADH_zinc_N: Zinc-bind 70.6 23 0.00049 27.3 7.1 42 81-125 2-43 (130)
139 TIGR01832 kduD 2-deoxy-D-gluco 70.3 44 0.00096 28.8 9.6 54 70-124 6-59 (248)
140 PRK07109 short chain dehydroge 70.2 29 0.00063 32.0 8.7 55 70-124 9-64 (334)
141 PRK06182 short chain dehydroge 70.1 67 0.0015 28.3 10.9 68 70-141 4-71 (273)
142 PRK13394 3-hydroxybutyrate deh 70.0 40 0.00087 29.3 9.3 55 70-124 8-63 (262)
143 PF02826 2-Hacid_dh_C: D-isome 69.8 58 0.0013 27.0 9.7 105 71-198 37-143 (178)
144 PRK08589 short chain dehydroge 69.7 32 0.0007 30.4 8.7 54 70-123 7-60 (272)
145 PRK08226 short chain dehydroge 69.7 36 0.00078 29.7 9.0 54 70-123 7-60 (263)
146 PRK07523 gluconate 5-dehydroge 69.5 37 0.00081 29.5 9.0 55 70-124 11-66 (255)
147 PRK14030 glutamate dehydrogena 69.0 34 0.00073 33.2 9.0 53 49-102 207-260 (445)
148 cd08296 CAD_like Cinnamyl alco 68.8 60 0.0013 29.6 10.6 50 65-118 160-209 (333)
149 PRK05993 short chain dehydroge 68.7 60 0.0013 28.7 10.3 65 70-138 5-69 (277)
150 PF00764 Arginosuc_synth: Argi 68.4 72 0.0016 30.3 10.8 127 73-207 1-138 (388)
151 cd08289 MDR_yhfp_like Yhfp put 67.8 46 0.001 30.0 9.5 47 69-118 147-193 (326)
152 PTZ00354 alcohol dehydrogenase 67.6 81 0.0018 28.4 11.1 55 64-121 136-190 (334)
153 PRK06114 short chain dehydroge 67.5 63 0.0014 28.1 10.1 55 70-124 9-65 (254)
154 PRK10309 galactitol-1-phosphat 67.2 48 0.001 30.5 9.6 56 61-119 153-208 (347)
155 PF02254 TrkA_N: TrkA-N domain 67.2 51 0.0011 24.8 12.3 93 74-208 2-95 (116)
156 cd08287 FDH_like_ADH3 formalde 67.0 78 0.0017 28.9 11.0 53 63-118 163-215 (345)
157 PRK12937 short chain dehydroge 66.3 56 0.0012 28.0 9.4 55 70-124 6-62 (245)
158 PF04127 DFP: DNA / pantothena 66.3 49 0.0011 27.9 8.5 63 71-142 21-83 (185)
159 PRK08063 enoyl-(acyl carrier p 66.3 57 0.0012 28.1 9.5 55 70-124 5-61 (250)
160 PRK05557 fabG 3-ketoacyl-(acyl 66.1 59 0.0013 27.8 9.5 55 70-124 6-62 (248)
161 cd08231 MDR_TM0436_like Hypoth 66.0 97 0.0021 28.6 11.5 52 63-118 172-224 (361)
162 cd08239 THR_DH_like L-threonin 65.8 72 0.0016 29.1 10.5 56 61-119 156-211 (339)
163 PRK06139 short chain dehydroge 65.8 36 0.00079 31.4 8.4 54 70-123 8-62 (330)
164 PRK05786 fabG 3-ketoacyl-(acyl 65.8 45 0.00097 28.5 8.6 33 70-102 6-38 (238)
165 PRK07097 gluconate 5-dehydroge 65.6 46 0.001 29.2 8.8 55 70-124 11-66 (265)
166 PRK12771 putative glutamate sy 65.4 14 0.00031 36.9 6.0 55 67-122 135-207 (564)
167 KOG0024 Sorbitol dehydrogenase 65.2 67 0.0014 29.8 9.5 64 58-124 159-222 (354)
168 PRK08277 D-mannonate oxidoredu 64.2 55 0.0012 28.9 9.1 55 70-124 11-66 (278)
169 PRK11891 aspartate carbamoyltr 64.1 43 0.00094 32.3 8.6 45 79-123 253-300 (429)
170 cd08297 CAD3 Cinnamyl alcohol 64.1 92 0.002 28.3 10.9 51 65-118 162-212 (341)
171 cd08285 NADP_ADH NADP(H)-depen 64.0 85 0.0018 28.8 10.6 55 61-118 159-213 (351)
172 cd08288 MDR_yhdh Yhdh putative 63.9 55 0.0012 29.5 9.2 50 68-120 146-195 (324)
173 PRK10754 quinone oxidoreductas 63.8 1.1E+02 0.0025 27.5 11.5 54 62-118 134-187 (327)
174 cd08185 Fe-ADH1 Iron-containin 63.7 53 0.0011 31.0 9.2 89 95-189 4-96 (380)
175 PRK15454 ethanol dehydrogenase 63.6 39 0.00085 32.2 8.3 91 93-190 25-120 (395)
176 TIGR02818 adh_III_F_hyde S-(hy 63.3 59 0.0013 30.3 9.5 55 62-119 179-233 (368)
177 cd08187 BDH Butanol dehydrogen 63.2 1.4E+02 0.003 28.3 11.9 90 95-190 7-100 (382)
178 cd08242 MDR_like Medium chain 63.1 67 0.0015 28.9 9.6 55 61-119 148-202 (319)
179 PRK06172 short chain dehydroge 63.0 55 0.0012 28.4 8.7 55 70-124 8-63 (253)
180 cd08269 Zn_ADH9 Alcohol dehydr 62.8 1.1E+02 0.0024 27.1 11.3 53 62-117 123-175 (312)
181 PRK05396 tdh L-threonine 3-deh 62.7 52 0.0011 30.1 8.9 50 67-119 162-211 (341)
182 PF08659 KR: KR domain; Inter 62.7 52 0.0011 27.3 8.1 54 71-124 2-60 (181)
183 TIGR01751 crot-CoA-red crotony 62.5 56 0.0012 30.8 9.3 56 64-122 185-240 (398)
184 KOG1201 Hydroxysteroid 17-beta 62.4 1.3E+02 0.0027 27.6 10.8 74 69-143 38-113 (300)
185 cd08258 Zn_ADH4 Alcohol dehydr 62.4 1.1E+02 0.0023 27.6 10.8 54 63-118 159-212 (306)
186 PRK12779 putative bifunctional 62.3 52 0.0011 35.3 9.7 32 70-101 306-337 (944)
187 PRK12939 short chain dehydroge 62.2 61 0.0013 27.8 8.9 55 70-124 8-63 (250)
188 PRK12828 short chain dehydroge 62.2 82 0.0018 26.7 9.6 55 70-124 8-63 (239)
189 PRK06128 oxidoreductase; Provi 62.1 85 0.0018 28.2 10.1 71 70-140 56-130 (300)
190 cd00401 AdoHcyase S-adenosyl-L 62.1 47 0.001 31.9 8.5 53 64-120 197-249 (413)
191 cd08277 liver_alcohol_DH_like 62.1 56 0.0012 30.4 9.1 54 62-118 178-231 (365)
192 PRK07666 fabG 3-ketoacyl-(acyl 62.0 69 0.0015 27.4 9.1 54 71-124 9-63 (239)
193 cd05211 NAD_bind_Glu_Leu_Phe_V 61.9 43 0.00092 29.1 7.6 53 51-103 4-56 (217)
194 cd08300 alcohol_DH_class_III c 61.9 49 0.0011 30.8 8.6 56 62-120 180-235 (368)
195 PRK08261 fabG 3-ketoacyl-(acyl 61.9 93 0.002 29.9 10.8 56 69-124 210-265 (450)
196 COG1751 Uncharacterized conser 61.8 81 0.0018 25.8 8.4 75 44-123 7-90 (186)
197 cd08246 crotonyl_coA_red croto 61.8 35 0.00075 32.1 7.7 55 64-121 189-243 (393)
198 PRK07791 short chain dehydroge 61.7 88 0.0019 28.0 10.0 72 70-141 7-89 (286)
199 PRK12938 acetyacetyl-CoA reduc 61.7 75 0.0016 27.3 9.4 54 70-123 4-59 (246)
200 PRK07792 fabG 3-ketoacyl-(acyl 61.7 93 0.002 28.1 10.3 55 70-124 13-69 (306)
201 PLN02342 ornithine carbamoyltr 61.6 49 0.0011 31.0 8.4 61 62-123 188-251 (348)
202 cd08291 ETR_like_1 2-enoyl thi 61.6 67 0.0014 29.1 9.3 48 71-121 145-193 (324)
203 cd08284 FDH_like_2 Glutathione 61.3 56 0.0012 29.8 8.9 53 64-119 163-215 (344)
204 PRK09134 short chain dehydroge 61.3 86 0.0019 27.2 9.7 54 70-123 10-65 (258)
205 PRK08217 fabG 3-ketoacyl-(acyl 61.0 66 0.0014 27.6 8.9 55 70-124 6-61 (253)
206 PRK12935 acetoacetyl-CoA reduc 60.9 78 0.0017 27.2 9.3 55 70-124 7-63 (247)
207 TIGR00696 wecB_tagA_cpsF bacte 60.8 97 0.0021 25.9 9.3 116 82-208 13-132 (177)
208 PRK08643 acetoin reductase; Va 60.8 74 0.0016 27.6 9.2 54 71-124 4-58 (256)
209 TIGR00692 tdh L-threonine 3-de 60.6 70 0.0015 29.2 9.4 50 66-118 159-208 (340)
210 PRK08278 short chain dehydroge 60.6 90 0.002 27.6 9.8 55 70-124 7-69 (273)
211 PLN02740 Alcohol dehydrogenase 60.5 52 0.0011 30.8 8.6 55 62-119 192-246 (381)
212 PRK08862 short chain dehydroge 60.5 66 0.0014 27.7 8.7 53 70-122 6-59 (227)
213 PRK08192 aspartate carbamoyltr 60.4 49 0.0011 30.9 8.1 45 79-123 171-218 (338)
214 PRK00779 ornithine carbamoyltr 60.3 55 0.0012 30.0 8.4 61 62-123 146-209 (304)
215 PTZ00079 NADP-specific glutama 60.2 64 0.0014 31.4 9.0 53 50-102 217-269 (454)
216 PRK06181 short chain dehydroge 60.1 65 0.0014 28.1 8.8 54 71-124 3-57 (263)
217 cd08243 quinone_oxidoreductase 59.9 1.3E+02 0.0027 26.8 11.3 54 63-119 137-190 (320)
218 PRK05876 short chain dehydroge 59.8 75 0.0016 28.2 9.2 72 70-141 7-80 (275)
219 PRK08936 glucose-1-dehydrogena 59.8 82 0.0018 27.5 9.3 54 70-123 8-63 (261)
220 PRK07478 short chain dehydroge 59.7 69 0.0015 27.8 8.8 72 70-141 7-80 (254)
221 PRK12429 3-hydroxybutyrate deh 59.2 78 0.0017 27.3 9.1 55 70-124 5-60 (258)
222 PRK07806 short chain dehydroge 58.9 98 0.0021 26.6 9.6 55 70-124 7-63 (248)
223 PRK10083 putative oxidoreducta 58.8 1E+02 0.0023 27.9 10.2 58 60-120 152-210 (339)
224 cd08301 alcohol_DH_plants Plan 58.8 74 0.0016 29.6 9.3 57 62-121 181-237 (369)
225 PRK08303 short chain dehydroge 58.6 85 0.0018 28.5 9.4 72 70-141 9-92 (305)
226 PRK12745 3-ketoacyl-(acyl-carr 58.1 94 0.002 26.8 9.4 54 71-124 4-59 (256)
227 PRK07035 short chain dehydroge 58.1 87 0.0019 27.0 9.1 54 70-123 9-63 (252)
228 PRK05653 fabG 3-ketoacyl-(acyl 58.0 99 0.0021 26.3 9.4 55 70-124 6-61 (246)
229 TIGR01316 gltA glutamate synth 57.9 41 0.00088 32.6 7.5 53 71-123 273-330 (449)
230 cd08298 CAD2 Cinnamyl alcohol 57.8 71 0.0015 28.9 8.8 54 61-118 160-213 (329)
231 cd05313 NAD_bind_2_Glu_DH NAD( 57.5 57 0.0012 29.1 7.7 53 50-102 18-70 (254)
232 PRK06194 hypothetical protein; 57.2 96 0.0021 27.4 9.4 55 70-124 7-62 (287)
233 cd05282 ETR_like 2-enoyl thioe 57.2 95 0.0021 27.8 9.5 53 62-117 132-184 (323)
234 PRK08017 oxidoreductase; Provi 57.1 1.1E+02 0.0025 26.3 9.8 51 71-124 4-54 (256)
235 PRK05866 short chain dehydroge 57.1 74 0.0016 28.6 8.7 54 71-124 42-96 (293)
236 PRK08085 gluconate 5-dehydroge 57.1 89 0.0019 27.0 9.1 55 70-124 10-65 (254)
237 PRK06124 gluconate 5-dehydroge 56.9 83 0.0018 27.2 8.8 55 69-123 11-66 (256)
238 PRK07454 short chain dehydroge 56.8 77 0.0017 27.2 8.5 71 71-141 8-80 (241)
239 PRK06197 short chain dehydroge 56.6 1.5E+02 0.0033 26.6 11.0 32 70-101 17-48 (306)
240 PRK07231 fabG 3-ketoacyl-(acyl 56.5 1.1E+02 0.0023 26.3 9.5 33 70-102 6-38 (251)
241 PF01262 AlaDh_PNT_C: Alanine 56.3 46 0.001 27.3 6.6 51 71-124 21-71 (168)
242 PRK07890 short chain dehydroge 56.1 85 0.0019 27.1 8.8 55 70-124 6-61 (258)
243 PRK05867 short chain dehydroge 55.9 87 0.0019 27.1 8.8 54 70-123 10-64 (253)
244 cd08259 Zn_ADH5 Alcohol dehydr 55.8 1.1E+02 0.0023 27.6 9.7 52 64-118 158-209 (332)
245 TIGR02415 23BDH acetoin reduct 55.8 93 0.002 26.8 9.0 54 71-124 2-56 (254)
246 PRK12826 3-ketoacyl-(acyl-carr 55.7 91 0.002 26.7 8.9 55 70-124 7-62 (251)
247 PRK09860 putative alcohol dehy 55.4 82 0.0018 29.8 9.0 90 94-190 8-102 (383)
248 TIGR00658 orni_carb_tr ornithi 55.3 77 0.0017 29.0 8.5 61 62-123 142-208 (304)
249 cd08245 CAD Cinnamyl alcohol d 55.2 1E+02 0.0022 27.8 9.5 54 63-120 157-210 (330)
250 TIGR00730 conserved hypothetic 55.1 1.3E+02 0.0027 25.3 9.8 114 161-299 17-134 (178)
251 PRK07814 short chain dehydroge 55.1 92 0.002 27.2 8.8 54 70-123 11-65 (263)
252 PRK06077 fabG 3-ketoacyl-(acyl 55.1 98 0.0021 26.6 9.0 55 70-124 7-63 (252)
253 PRK06701 short chain dehydroge 55.0 1.4E+02 0.003 26.8 10.1 55 70-124 47-103 (290)
254 PRK06949 short chain dehydroge 55.0 83 0.0018 27.2 8.5 32 70-101 10-41 (258)
255 PRK07677 short chain dehydroge 54.9 92 0.002 27.0 8.8 54 70-123 2-56 (252)
256 PRK06500 short chain dehydroge 54.9 1.2E+02 0.0026 25.9 9.5 51 70-123 7-58 (249)
257 PRK12744 short chain dehydroge 54.8 89 0.0019 27.1 8.7 55 70-124 9-68 (257)
258 KOG1176 Acyl-CoA synthetase [L 54.8 2.3E+02 0.005 28.3 12.6 71 54-124 56-127 (537)
259 TIGR03206 benzo_BadH 2-hydroxy 54.7 96 0.0021 26.6 8.8 55 70-124 4-59 (250)
260 COG0300 DltE Short-chain dehyd 54.7 94 0.002 27.9 8.6 72 70-141 7-81 (265)
261 COG1587 HemD Uroporphyrinogen- 54.7 1.5E+02 0.0032 26.0 10.2 120 82-210 86-212 (248)
262 PLN02918 pyridoxine (pyridoxam 54.5 95 0.0021 31.0 9.3 49 71-119 137-192 (544)
263 cd08250 Mgc45594_like Mgc45594 54.5 1.6E+02 0.0036 26.4 11.3 52 63-117 134-185 (329)
264 PRK06198 short chain dehydroge 54.2 1.2E+02 0.0027 26.2 9.5 55 70-124 7-63 (260)
265 PRK08213 gluconate 5-dehydroge 54.2 98 0.0021 26.9 8.9 55 70-124 13-68 (259)
266 PRK12825 fabG 3-ketoacyl-(acyl 54.2 1.1E+02 0.0025 25.9 9.2 55 70-124 7-63 (249)
267 TIGR03325 BphB_TodD cis-2,3-di 54.2 1.2E+02 0.0026 26.5 9.4 51 70-123 6-57 (262)
268 PRK12775 putative trifunctiona 54.2 73 0.0016 34.4 9.2 31 71-101 431-461 (1006)
269 TIGR01963 PHB_DH 3-hydroxybuty 54.1 92 0.002 26.8 8.6 54 71-124 3-57 (255)
270 cd08244 MDR_enoyl_red Possible 54.0 1.6E+02 0.0035 26.2 11.1 54 61-117 135-188 (324)
271 PRK06113 7-alpha-hydroxysteroi 53.8 97 0.0021 26.9 8.7 54 70-123 12-66 (255)
272 PF13460 NAD_binding_10: NADH( 53.8 34 0.00073 28.0 5.5 46 73-123 2-47 (183)
273 TIGR02824 quinone_pig3 putativ 53.8 1.6E+02 0.0035 26.1 11.0 54 61-117 132-185 (325)
274 PRK06720 hypothetical protein; 53.6 1.3E+02 0.0027 24.8 9.7 30 70-99 17-46 (169)
275 cd08282 PFDH_like Pseudomonas 53.5 94 0.002 29.0 9.1 54 62-118 170-223 (375)
276 cd05281 TDH Threonine dehydrog 53.5 89 0.0019 28.5 8.8 49 67-118 162-210 (341)
277 cd06324 PBP1_ABC_sugar_binding 53.5 1.7E+02 0.0036 26.2 18.3 43 164-209 192-238 (305)
278 PLN02527 aspartate carbamoyltr 53.4 1.4E+02 0.0031 27.3 9.9 45 79-123 163-210 (306)
279 PRK12809 putative oxidoreducta 53.3 46 0.001 33.9 7.3 77 46-122 279-380 (639)
280 PF13561 adh_short_C2: Enoyl-( 53.3 95 0.0021 26.7 8.6 64 77-141 4-69 (241)
281 KOG3857 Alcohol dehydrogenase, 53.3 54 0.0012 30.6 6.8 28 159-189 113-140 (465)
282 cd05286 QOR2 Quinone oxidoredu 53.3 1.6E+02 0.0034 25.9 11.0 52 63-117 131-182 (320)
283 cd05288 PGDH Prostaglandin deh 53.2 1.7E+02 0.0037 26.2 11.1 53 63-118 140-193 (329)
284 cd08261 Zn_ADH7 Alcohol dehydr 53.1 1.8E+02 0.0038 26.4 10.9 52 62-117 153-204 (337)
285 cd05188 MDR Medium chain reduc 53.0 1.5E+02 0.0032 25.5 9.9 52 63-118 129-180 (271)
286 PRK10537 voltage-gated potassi 53.0 2.1E+02 0.0046 27.3 11.8 95 71-209 241-336 (393)
287 cd08278 benzyl_alcohol_DH Benz 53.0 1.5E+02 0.0034 27.4 10.4 53 63-118 181-233 (365)
288 PRK02255 putrescine carbamoylt 52.8 94 0.002 29.0 8.7 53 71-123 156-214 (338)
289 cd08264 Zn_ADH_like2 Alcohol d 52.7 89 0.0019 28.2 8.6 38 62-99 156-193 (325)
290 cd08267 MDR1 Medium chain dehy 52.5 1.1E+02 0.0023 27.3 9.0 51 63-117 138-188 (319)
291 PRK05693 short chain dehydroge 52.5 1.6E+02 0.0035 25.8 10.7 66 71-140 3-68 (274)
292 PRK06463 fabG 3-ketoacyl-(acyl 52.4 1.6E+02 0.0034 25.5 10.9 69 70-141 8-76 (255)
293 PRK09730 putative NAD(P)-bindi 52.3 1.2E+02 0.0026 25.9 9.1 54 71-124 3-58 (247)
294 PRK05565 fabG 3-ketoacyl-(acyl 52.3 1.4E+02 0.003 25.5 9.4 54 71-124 7-62 (247)
295 PRK08265 short chain dehydroge 52.3 1.4E+02 0.0031 25.9 9.7 52 70-123 7-58 (261)
296 TIGR01831 fabG_rel 3-oxoacyl-( 52.2 1.3E+02 0.0029 25.6 9.3 52 73-124 2-55 (239)
297 PRK13376 pyrB bifunctional asp 52.1 1.5E+02 0.0033 29.5 10.3 45 79-123 186-233 (525)
298 PRK09422 ethanol-active dehydr 51.9 1.6E+02 0.0036 26.6 10.3 56 61-120 155-211 (338)
299 PRK08416 7-alpha-hydroxysteroi 51.8 1.6E+02 0.0034 25.7 9.8 72 70-141 9-84 (260)
300 cd08170 GlyDH Glycerol dehydro 51.8 54 0.0012 30.5 7.0 93 110-211 16-110 (351)
301 PRK06138 short chain dehydroge 51.8 1.2E+02 0.0027 25.9 9.1 54 70-124 6-60 (252)
302 PLN02702 L-idonate 5-dehydroge 51.8 1.3E+02 0.0029 27.7 9.8 56 62-120 175-230 (364)
303 PRK06079 enoyl-(acyl carrier p 51.8 94 0.002 27.1 8.3 32 70-101 8-41 (252)
304 PRK12831 putative oxidoreducta 51.8 59 0.0013 31.6 7.6 53 71-123 282-339 (464)
305 PRK07832 short chain dehydroge 51.7 1.7E+02 0.0036 25.7 11.0 30 71-100 2-31 (272)
306 CHL00194 ycf39 Ycf39; Provisio 51.6 63 0.0014 29.4 7.4 32 71-102 2-33 (317)
307 PF00670 AdoHcyase_NAD: S-aden 51.6 76 0.0017 26.2 7.0 53 64-120 18-70 (162)
308 PRK06841 short chain dehydroge 51.6 1.3E+02 0.0027 26.0 9.1 32 70-101 16-47 (255)
309 PLN02827 Alcohol dehydrogenase 51.6 1.2E+02 0.0026 28.4 9.5 55 62-119 187-241 (378)
310 cd08176 LPO Lactadehyde:propan 51.2 84 0.0018 29.6 8.3 95 94-196 5-104 (377)
311 PRK07904 short chain dehydroge 51.1 1.5E+02 0.0033 25.8 9.6 53 70-122 9-65 (253)
312 PRK02102 ornithine carbamoyltr 51.1 1.6E+02 0.0035 27.4 9.9 60 62-123 149-216 (331)
313 PRK08264 short chain dehydroge 50.8 76 0.0016 27.1 7.5 32 70-101 7-39 (238)
314 TIGR00561 pntA NAD(P) transhyd 50.8 62 0.0013 32.0 7.4 51 71-124 165-215 (511)
315 PRK06947 glucose-1-dehydrogena 50.8 1.1E+02 0.0025 26.2 8.7 54 71-124 4-59 (248)
316 TIGR02823 oxido_YhdH putative 50.5 1.3E+02 0.0028 27.0 9.3 50 66-118 142-192 (323)
317 PRK10538 malonic semialdehyde 50.5 1.4E+02 0.0031 25.7 9.3 50 71-123 2-52 (248)
318 cd08299 alcohol_DH_class_I_II_ 50.2 1.2E+02 0.0026 28.3 9.2 54 62-118 184-237 (373)
319 PF07279 DUF1442: Protein of u 50.2 1E+02 0.0022 26.8 7.7 56 59-117 34-94 (218)
320 cd08551 Fe-ADH iron-containing 50.0 2.2E+02 0.0048 26.6 11.0 85 99-190 5-94 (370)
321 KOG2862 Alanine-glyoxylate ami 49.9 1.1E+02 0.0023 28.4 8.1 84 71-154 69-154 (385)
322 cd05280 MDR_yhdh_yhfp Yhdh and 49.7 1.5E+02 0.0032 26.6 9.5 46 71-119 149-194 (325)
323 cd05285 sorbitol_DH Sorbitol d 49.6 1.5E+02 0.0033 27.0 9.7 55 61-118 155-209 (343)
324 PRK05717 oxidoreductase; Valid 49.4 1.6E+02 0.0035 25.5 9.4 53 70-124 11-63 (255)
325 COG1454 EutG Alcohol dehydroge 49.2 1.4E+02 0.003 28.3 9.3 100 95-199 7-108 (377)
326 COG0623 FabI Enoyl-[acyl-carri 49.1 1.2E+02 0.0025 26.9 7.9 17 69-85 6-22 (259)
327 PF11760 CbiG_N: Cobalamin syn 48.9 40 0.00086 24.6 4.4 50 167-216 3-52 (84)
328 PRK06505 enoyl-(acyl carrier p 48.9 1.6E+02 0.0035 26.0 9.5 71 70-141 8-82 (271)
329 cd08253 zeta_crystallin Zeta-c 48.8 1.9E+02 0.0041 25.5 11.0 51 64-117 140-190 (325)
330 PRK08306 dipicolinate synthase 48.7 1.7E+02 0.0036 26.6 9.6 46 71-119 153-198 (296)
331 cd08251 polyketide_synthase po 48.7 1.9E+02 0.004 25.3 11.2 55 61-118 113-167 (303)
332 PRK07775 short chain dehydroge 48.7 1.5E+02 0.0033 26.1 9.2 55 70-124 11-66 (274)
333 PRK05826 pyruvate kinase; Prov 48.6 2.7E+02 0.0059 27.2 11.6 124 85-213 264-407 (465)
334 PRK14804 ornithine carbamoyltr 48.6 96 0.0021 28.5 8.0 37 69-105 153-189 (311)
335 cd08262 Zn_ADH8 Alcohol dehydr 48.6 1.6E+02 0.0035 26.7 9.7 55 61-118 154-208 (341)
336 PRK08594 enoyl-(acyl carrier p 48.6 1.7E+02 0.0037 25.5 9.5 72 70-141 8-84 (257)
337 KOG1205 Predicted dehydrogenas 48.6 52 0.0011 29.8 6.1 72 71-142 14-89 (282)
338 PRK04148 hypothetical protein; 48.4 81 0.0018 25.2 6.5 50 71-124 18-67 (134)
339 cd00288 Pyruvate_Kinase Pyruva 48.2 1.6E+02 0.0034 29.0 9.7 68 48-124 359-427 (480)
340 PRK07985 oxidoreductase; Provi 48.1 1.5E+02 0.0032 26.7 9.2 54 70-123 50-106 (294)
341 PRK07774 short chain dehydroge 48.1 1.6E+02 0.0034 25.3 9.1 54 70-123 7-61 (250)
342 PRK07326 short chain dehydroge 48.1 1.7E+02 0.0037 24.8 9.5 32 70-101 7-38 (237)
343 PLN03050 pyridoxine (pyridoxam 48.0 1.6E+02 0.0035 26.1 9.0 33 71-103 62-97 (246)
344 PRK06483 dihydromonapterin red 48.0 1.7E+02 0.0038 24.8 10.4 65 71-138 4-68 (236)
345 cd08550 GlyDH-like Glycerol_de 48.0 1E+02 0.0022 28.7 8.3 93 110-211 16-110 (349)
346 TIGR02638 lactal_redase lactal 47.6 1.1E+02 0.0024 28.8 8.5 15 174-189 85-99 (379)
347 PRK09291 short chain dehydroge 47.6 75 0.0016 27.5 7.0 53 71-123 4-57 (257)
348 cd05279 Zn_ADH1 Liver alcohol 47.5 2E+02 0.0043 26.6 10.2 54 62-118 177-230 (365)
349 COG0399 WecE Predicted pyridox 47.4 1.7E+02 0.0037 27.7 9.5 55 71-125 50-104 (374)
350 PRK14031 glutamate dehydrogena 47.4 87 0.0019 30.4 7.7 52 50-102 208-260 (444)
351 PRK14805 ornithine carbamoyltr 47.3 87 0.0019 28.7 7.4 49 75-123 153-207 (302)
352 cd08249 enoyl_reductase_like e 47.3 1.2E+02 0.0025 27.8 8.5 48 67-118 153-200 (339)
353 PRK09072 short chain dehydroge 47.3 1.3E+02 0.0028 26.2 8.6 32 70-101 6-37 (263)
354 cd05278 FDH_like Formaldehyde 47.2 1.3E+02 0.0029 27.3 8.9 54 62-118 161-214 (347)
355 cd08181 PPD-like 1,3-propanedi 47.1 1.4E+02 0.0031 27.8 9.1 22 167-189 74-96 (357)
356 cd06268 PBP1_ABC_transporter_L 46.9 1.9E+02 0.0041 25.0 15.9 150 53-213 55-227 (298)
357 cd08248 RTN4I1 Human Reticulon 46.9 1.2E+02 0.0026 27.6 8.6 46 69-118 163-208 (350)
358 PRK06200 2,3-dihydroxy-2,3-dih 46.8 1.7E+02 0.0038 25.4 9.3 69 70-141 7-77 (263)
359 cd08290 ETR 2-enoyl thioester 46.6 1.3E+02 0.0028 27.3 8.7 57 64-120 142-199 (341)
360 smart00822 PKS_KR This enzymat 46.6 1.4E+02 0.0031 23.4 8.5 53 71-123 2-59 (180)
361 PRK08642 fabG 3-ketoacyl-(acyl 46.6 1.9E+02 0.0041 24.8 9.5 33 70-102 6-38 (253)
362 PRK08251 short chain dehydroge 46.3 1.6E+02 0.0034 25.2 8.9 31 71-101 4-34 (248)
363 PRK05854 short chain dehydroge 46.3 1.6E+02 0.0036 26.6 9.3 73 70-142 15-91 (313)
364 TIGR02817 adh_fam_1 zinc-bindi 46.1 1.7E+02 0.0037 26.4 9.4 47 69-118 149-196 (336)
365 cd08235 iditol_2_DH_like L-idi 46.1 2.3E+02 0.005 25.7 11.4 53 62-117 159-211 (343)
366 PF12000 Glyco_trans_4_3: Gkyc 46.1 43 0.00094 27.9 4.8 40 163-208 55-94 (171)
367 TIGR00936 ahcY adenosylhomocys 46.0 1.4E+02 0.0031 28.6 8.9 52 64-119 190-241 (406)
368 PRK12810 gltD glutamate syntha 45.9 85 0.0018 30.6 7.7 76 46-121 112-212 (471)
369 PRK04284 ornithine carbamoyltr 45.9 2E+02 0.0043 26.8 9.6 45 79-123 166-216 (332)
370 PRK10624 L-1,2-propanediol oxi 45.9 1.2E+02 0.0026 28.7 8.4 15 175-190 87-101 (382)
371 PRK09242 tropinone reductase; 45.9 1.7E+02 0.0036 25.3 9.0 55 70-124 10-67 (257)
372 PRK12859 3-ketoacyl-(acyl-carr 45.9 1.3E+02 0.0029 26.1 8.3 55 70-124 7-75 (256)
373 cd08283 FDH_like_1 Glutathione 45.9 2.2E+02 0.0047 26.7 10.3 55 62-119 178-233 (386)
374 PRK02610 histidinol-phosphate 45.8 1.5E+02 0.0033 27.6 9.2 53 72-124 93-145 (374)
375 cd01011 nicotinamidase Nicotin 45.7 1.6E+02 0.0034 24.8 8.5 62 55-120 128-196 (196)
376 cd08260 Zn_ADH6 Alcohol dehydr 45.7 2.1E+02 0.0046 26.0 10.0 51 63-117 160-210 (345)
377 PLN02586 probable cinnamyl alc 45.6 1.1E+02 0.0024 28.5 8.1 53 64-119 179-231 (360)
378 PLN02253 xanthoxin dehydrogena 45.6 1.3E+02 0.0027 26.6 8.2 32 70-101 19-50 (280)
379 PRK09414 glutamate dehydrogena 45.5 94 0.002 30.2 7.6 53 50-102 212-264 (445)
380 PRK09423 gldA glycerol dehydro 45.3 1.4E+02 0.0031 28.0 8.8 43 166-211 74-117 (366)
381 PF01494 FAD_binding_3: FAD bi 45.1 33 0.00072 31.1 4.5 32 71-102 2-33 (356)
382 PF13450 NAD_binding_8: NAD(P) 45.1 36 0.00078 23.4 3.6 27 77-103 3-29 (68)
383 cd01078 NAD_bind_H4MPT_DH NADP 44.9 1.8E+02 0.004 24.2 11.0 31 69-99 28-58 (194)
384 PRK05650 short chain dehydroge 44.9 1.6E+02 0.0034 25.8 8.7 54 71-124 2-56 (270)
385 PRK08340 glucose-1-dehydrogena 44.7 1.3E+02 0.0028 26.1 8.1 30 71-100 2-31 (259)
386 PRK08945 putative oxoacyl-(acy 44.7 1.9E+02 0.0041 24.8 9.1 33 69-101 12-44 (247)
387 PRK07576 short chain dehydroge 44.1 1.8E+02 0.0039 25.4 9.0 54 70-123 10-64 (264)
388 cd08240 6_hydroxyhexanoate_dh_ 44.0 2.5E+02 0.0055 25.6 10.7 49 67-118 174-222 (350)
389 TIGR01318 gltD_gamma_fam gluta 43.9 89 0.0019 30.4 7.4 51 71-121 142-210 (467)
390 cd08270 MDR4 Medium chain dehy 43.9 2.2E+02 0.0047 25.2 9.6 48 68-118 132-179 (305)
391 PRK07062 short chain dehydroge 43.7 2E+02 0.0043 25.0 9.2 33 70-102 9-41 (265)
392 PRK07067 sorbitol dehydrogenas 43.7 2E+02 0.0044 24.8 9.2 32 70-101 7-38 (257)
393 cd08255 2-desacetyl-2-hydroxye 43.7 1.8E+02 0.0038 25.5 8.9 51 62-116 91-142 (277)
394 PRK12746 short chain dehydroge 43.5 1.9E+02 0.0042 24.8 9.0 54 70-123 7-62 (254)
395 PLN02178 cinnamyl-alcohol dehy 43.5 79 0.0017 29.7 6.8 50 67-119 177-226 (375)
396 PRK12747 short chain dehydroge 43.2 1.4E+02 0.003 25.7 8.0 54 70-123 5-60 (252)
397 PRK06101 short chain dehydroge 43.2 2E+02 0.0044 24.6 9.0 48 71-121 3-50 (240)
398 cd01455 vWA_F11C1-5a_type Von 43.1 79 0.0017 26.9 6.0 35 268-303 88-123 (191)
399 PF03853 YjeF_N: YjeF-related 43.1 1.9E+02 0.0041 23.8 9.9 31 70-100 26-59 (169)
400 PF02887 PK_C: Pyruvate kinase 42.9 72 0.0016 24.4 5.4 44 164-213 7-50 (117)
401 PRK12769 putative oxidoreducta 42.9 43 0.00094 34.2 5.3 51 71-121 328-396 (654)
402 PF13478 XdhC_C: XdhC Rossmann 42.8 36 0.00079 27.1 3.8 31 73-103 1-31 (136)
403 PLN02583 cinnamoyl-CoA reducta 42.8 1.8E+02 0.0038 26.1 8.8 33 70-102 7-39 (297)
404 TIGR02095 glgA glycogen/starch 42.5 1.5E+02 0.0032 28.7 8.7 29 76-104 17-45 (473)
405 COG0159 TrpA Tryptophan syntha 42.4 2.2E+02 0.0049 25.5 9.0 84 49-136 77-167 (265)
406 cd08279 Zn_ADH_class_III Class 42.4 2.8E+02 0.006 25.6 10.9 53 62-117 176-228 (363)
407 PRK06924 short chain dehydroge 42.4 1.8E+02 0.0039 24.9 8.7 52 71-123 3-54 (251)
408 cd08191 HHD 6-hydroxyhexanoate 42.1 3E+02 0.0066 25.9 12.4 15 174-189 78-92 (386)
409 cd05283 CAD1 Cinnamyl alcohol 42.1 2.1E+02 0.0046 26.0 9.4 51 66-120 167-217 (337)
410 PRK07063 short chain dehydroge 42.1 2.2E+02 0.0047 24.7 9.1 32 70-101 8-39 (260)
411 PRK07023 short chain dehydroge 42.0 1.4E+02 0.0031 25.5 7.9 50 71-124 3-52 (243)
412 PRK12562 ornithine carbamoyltr 42.0 1.5E+02 0.0031 27.7 8.1 44 80-123 168-217 (334)
413 cd05284 arabinose_DH_like D-ar 41.9 2.6E+02 0.0057 25.2 10.5 50 65-118 164-214 (340)
414 cd08182 HEPD Hydroxyethylphosp 41.9 1.7E+02 0.0036 27.5 8.7 14 175-189 77-90 (367)
415 PRK05872 short chain dehydroge 41.7 2.2E+02 0.0047 25.5 9.3 31 70-100 10-40 (296)
416 PRK11609 nicotinamidase/pyrazi 41.7 2.1E+02 0.0045 24.3 8.7 59 60-122 137-204 (212)
417 cd08238 sorbose_phosphate_red 41.5 1E+02 0.0022 29.3 7.3 51 63-115 170-222 (410)
418 TIGR01829 AcAcCoA_reduct aceto 41.3 2.1E+02 0.0045 24.3 8.8 54 71-124 2-57 (242)
419 PRK08220 2,3-dihydroxybenzoate 41.2 1.9E+02 0.0041 24.8 8.6 33 70-102 9-41 (252)
420 PF13580 SIS_2: SIS domain; PD 41.1 55 0.0012 25.9 4.6 35 66-100 101-137 (138)
421 PRK13984 putative oxidoreducta 41.0 95 0.0021 31.3 7.4 51 71-121 284-352 (604)
422 PRK12742 oxidoreductase; Provi 40.9 2.2E+02 0.0048 24.1 8.9 53 70-124 7-60 (237)
423 PRK06123 short chain dehydroge 40.8 2.1E+02 0.0046 24.4 8.8 53 71-123 4-58 (248)
424 cd08192 Fe-ADH7 Iron-containin 40.8 1.8E+02 0.0039 27.2 8.8 22 167-189 72-94 (370)
425 TIGR03590 PseG pseudaminic aci 40.8 2.7E+02 0.0058 24.9 10.2 81 35-124 2-88 (279)
426 KOG0022 Alcohol dehydrogenase, 40.7 3.1E+02 0.0066 25.6 11.5 113 64-214 188-301 (375)
427 cd08171 GlyDH-like2 Glycerol d 40.7 1E+02 0.0022 28.6 7.0 35 174-211 77-111 (345)
428 PRK07370 enoyl-(acyl carrier p 40.5 2.4E+02 0.0051 24.6 9.1 71 70-141 7-84 (258)
429 PRK06953 short chain dehydroge 40.4 2.2E+02 0.0049 23.9 9.2 51 71-124 3-53 (222)
430 TIGR01830 3oxo_ACP_reduc 3-oxo 40.3 2E+02 0.0044 24.2 8.5 52 73-124 2-55 (239)
431 cd08186 Fe-ADH8 Iron-containin 40.2 2E+02 0.0043 27.1 9.0 14 175-189 84-97 (383)
432 cd05289 MDR_like_2 alcohol deh 40.2 2.5E+02 0.0055 24.5 10.0 50 64-117 140-189 (309)
433 PRK06847 hypothetical protein; 40.2 40 0.00086 31.3 4.2 31 71-101 5-35 (375)
434 PRK09126 hypothetical protein; 40.1 36 0.00078 31.9 4.0 30 72-101 5-34 (392)
435 PRK05370 argininosuccinate syn 40.1 3.6E+02 0.0078 26.2 12.6 131 69-208 11-156 (447)
436 PRK08339 short chain dehydroge 40.0 1.9E+02 0.0041 25.4 8.4 32 70-101 9-40 (263)
437 PRK11706 TDP-4-oxo-6-deoxy-D-g 39.9 89 0.0019 29.3 6.6 55 71-125 47-101 (375)
438 PRK05868 hypothetical protein; 39.8 41 0.00089 31.5 4.3 30 72-101 3-32 (372)
439 PRK06180 short chain dehydroge 39.8 2.2E+02 0.0048 25.0 8.9 32 70-101 5-36 (277)
440 cd08265 Zn_ADH3 Alcohol dehydr 39.7 2E+02 0.0044 26.8 9.0 53 64-119 199-251 (384)
441 KOG0634 Aromatic amino acid am 39.6 1.6E+02 0.0034 28.4 7.9 104 74-182 127-242 (472)
442 COG1010 CobJ Precorrin-3B meth 39.6 2.7E+02 0.0058 24.6 9.4 70 109-182 39-110 (249)
443 PRK07060 short chain dehydroge 39.5 1.6E+02 0.0034 25.1 7.7 52 70-124 10-62 (245)
444 cd08183 Fe-ADH2 Iron-containin 39.5 2.2E+02 0.0047 26.8 9.1 22 167-189 66-88 (374)
445 PRK04523 N-acetylornithine car 39.5 3.1E+02 0.0068 25.5 9.9 45 79-123 185-236 (335)
446 cd08286 FDH_like_ADH2 formalde 39.3 1.8E+02 0.004 26.4 8.5 51 63-117 161-212 (345)
447 COG0836 {ManC} Mannose-1-phosp 39.3 91 0.002 28.8 6.1 55 72-142 80-138 (333)
448 PF02737 3HCDH_N: 3-hydroxyacy 39.2 54 0.0012 27.4 4.5 30 73-102 2-31 (180)
449 PRK12749 quinate/shikimate deh 39.1 1.6E+02 0.0035 26.6 7.9 32 72-103 126-157 (288)
450 COG1433 Uncharacterized conser 39.1 1.9E+02 0.0041 22.6 7.3 51 82-135 54-104 (121)
451 PRK07856 short chain dehydroge 39.0 1.9E+02 0.0041 24.9 8.2 32 70-101 7-38 (252)
452 PLN02514 cinnamyl-alcohol dehy 38.9 2.4E+02 0.0053 26.0 9.3 54 63-119 175-228 (357)
453 PLN03049 pyridoxine (pyridoxam 38.7 2.3E+02 0.0051 27.6 9.3 33 71-103 61-96 (462)
454 cd08254 hydroxyacyl_CoA_DH 6-h 38.6 2.9E+02 0.0063 24.7 10.8 54 62-119 159-212 (338)
455 TIGR02853 spore_dpaA dipicolin 38.5 3E+02 0.0065 24.9 10.4 64 52-118 133-196 (287)
456 PF00465 Fe-ADH: Iron-containi 38.5 1.1E+02 0.0025 28.5 7.0 108 97-213 3-132 (366)
457 PRK06482 short chain dehydroge 38.5 2.1E+02 0.0046 25.0 8.6 32 71-102 4-35 (276)
458 PF02558 ApbA: Ketopantoate re 38.0 1.6E+02 0.0035 23.1 7.1 46 74-123 2-47 (151)
459 PF12831 FAD_oxidored: FAD dep 37.8 41 0.00089 32.3 4.0 31 73-103 2-32 (428)
460 PRK12827 short chain dehydroge 37.7 2.5E+02 0.0055 23.8 9.4 55 70-124 7-66 (249)
461 PRK10490 sensor protein KdpD; 37.4 3.5E+02 0.0075 28.9 11.1 107 71-184 252-375 (895)
462 PRK11749 dihydropyrimidine deh 37.4 1.3E+02 0.0029 29.0 7.5 52 71-122 274-331 (457)
463 PF02887 PK_C: Pyruvate kinase 37.2 1.8E+02 0.004 22.0 7.5 81 54-142 6-87 (117)
464 PRK07533 enoyl-(acyl carrier p 37.1 2.8E+02 0.006 24.1 9.0 31 71-101 12-44 (258)
465 PRK12748 3-ketoacyl-(acyl-carr 37.1 2.7E+02 0.0059 24.0 9.2 54 71-124 7-74 (256)
466 KOG1197 Predicted quinone oxid 37.0 2.9E+02 0.0062 25.0 8.6 99 61-199 139-238 (336)
467 KOG1177 Long chain fatty acid 37.0 4.3E+02 0.0093 26.2 10.9 91 34-125 68-158 (596)
468 TIGR02379 ECA_wecE TDP-4-keto- 36.8 2.7E+02 0.0058 26.2 9.3 55 71-125 47-101 (376)
469 PF03446 NAD_binding_2: NAD bi 36.7 1.3E+02 0.0028 24.4 6.4 45 72-119 3-47 (163)
470 PRK09853 putative selenate red 36.7 1.2E+02 0.0026 32.7 7.5 51 71-121 540-608 (1019)
471 PRK06125 short chain dehydroge 36.6 2E+02 0.0043 24.9 8.0 32 70-101 8-39 (259)
472 PRK06753 hypothetical protein; 36.4 49 0.0011 30.7 4.2 30 73-102 3-32 (373)
473 TIGR03865 PQQ_CXXCW PQQ-depend 36.4 1.7E+02 0.0038 23.9 7.0 41 68-108 115-156 (162)
474 PF11814 DUF3335: Peptidase_C3 36.3 93 0.002 26.8 5.4 25 79-103 53-77 (207)
475 PRK07200 aspartate/ornithine c 36.3 2.3E+02 0.005 27.1 8.6 45 79-123 204-254 (395)
476 PF13380 CoA_binding_2: CoA bi 36.2 1.4E+02 0.003 22.9 6.1 49 72-120 58-106 (116)
477 COG2518 Pcm Protein-L-isoaspar 36.2 2.2E+02 0.0048 24.6 7.7 108 55-184 59-170 (209)
478 PRK05875 short chain dehydroge 36.2 2.7E+02 0.0057 24.3 8.8 32 70-101 8-39 (276)
479 PRK07550 hypothetical protein; 36.0 3.6E+02 0.0079 25.1 11.4 76 45-124 67-143 (386)
480 PF04122 CW_binding_2: Putativ 36.0 1.7E+02 0.0036 21.1 9.9 55 71-126 26-83 (92)
481 PRK11658 UDP-4-amino-4-deoxy-L 36.0 2.9E+02 0.0062 25.9 9.4 52 73-124 51-102 (379)
482 cd08276 MDR7 Medium chain dehy 35.8 3.2E+02 0.0069 24.4 11.3 52 64-119 156-207 (336)
483 cd08194 Fe-ADH6 Iron-containin 35.7 3.8E+02 0.0082 25.2 11.5 16 174-190 79-94 (375)
484 COG2242 CobL Precorrin-6B meth 35.5 2.8E+02 0.006 23.5 8.4 131 68-210 57-187 (187)
485 PRK12770 putative glutamate sy 35.4 1.5E+02 0.0032 27.4 7.3 52 71-122 173-230 (352)
486 PLN02477 glutamate dehydrogena 35.2 1.7E+02 0.0037 28.1 7.6 52 50-102 186-238 (410)
487 PRK12814 putative NADPH-depend 35.2 1.5E+02 0.0032 30.4 7.7 52 71-122 194-263 (652)
488 PF02310 B12-binding: B12 bind 35.1 1.7E+02 0.0038 21.9 6.6 56 83-138 18-75 (121)
489 PRK05479 ketol-acid reductoiso 35.0 3.8E+02 0.0082 24.9 11.3 47 71-119 18-64 (330)
490 cd08177 MAR Maleylacetate redu 34.9 2.2E+02 0.0048 26.3 8.3 43 166-211 67-110 (337)
491 PRK03515 ornithine carbamoyltr 34.9 2.1E+02 0.0046 26.6 8.0 44 80-123 168-217 (336)
492 TIGR01425 SRP54_euk signal rec 34.9 4.3E+02 0.0093 25.6 10.4 79 42-125 106-191 (429)
493 PF00208 ELFV_dehydrog: Glutam 34.7 1.2E+02 0.0026 26.8 6.1 52 51-102 12-64 (244)
494 PRK13243 glyoxylate reductase; 34.6 3E+02 0.0065 25.5 9.1 104 71-198 151-256 (333)
495 cd08272 MDR6 Medium chain dehy 34.5 3.2E+02 0.007 24.1 10.7 54 62-119 138-191 (326)
496 PRK04870 histidinol-phosphate 34.5 2.8E+02 0.006 25.5 9.0 82 72-155 83-166 (356)
497 PF03807 F420_oxidored: NADP o 34.4 1.7E+02 0.0038 20.9 6.7 44 76-121 5-52 (96)
498 PRK08013 oxidoreductase; Provi 34.2 98 0.0021 29.2 5.9 31 72-102 5-35 (400)
499 cd08234 threonine_DH_like L-th 34.1 3.5E+02 0.0075 24.3 11.0 54 62-118 153-206 (334)
500 PRK12384 sorbitol-6-phosphate 34.1 3.1E+02 0.0066 23.6 9.4 31 71-101 4-34 (259)
No 1
>PLN02565 cysteine synthase
Probab=100.00 E-value=3.1e-72 Score=515.05 Aligned_cols=321 Identities=92% Similarity=1.371 Sum_probs=297.4
Q ss_pred ccchhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHH
Q 020528 5 KSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIG 84 (325)
Q Consensus 5 ~~~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a 84 (325)
++...++++..+|+|||++++.++...+.+||+|+|++|||||||||+|.+++..+.++|.+.+|++.||++|+||||.|
T Consensus 2 ~~~~~~~~~~~ig~TPLv~l~~l~~~~~~~i~~K~E~~nPtGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~a 81 (322)
T PLN02565 2 KSSIAKDVTELIGKTPLVYLNNVVDGCVARIAAKLEMMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIG 81 (322)
T ss_pred cchhhhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccchHHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHH
Confidence 34566789999999999999888766667999999999999999999999999999999998888778999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhch
Q 020528 85 LAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETT 164 (325)
Q Consensus 85 lA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~ 164 (325)
+|++|+.+|++|+||||++++..|+++++.+||+|+.+++..+++++.+.+++++++.+++|+++||+|+.|+..||+|+
T Consensus 82 lA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~n~~n~~~~~~t~ 161 (322)
T PLN02565 82 LAFMAAAKGYKLIITMPASMSLERRIILLAFGAELVLTDPAKGMKGAVQKAEEILAKTPNSYILQQFENPANPKIHYETT 161 (322)
T ss_pred HHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCCcHHHHHHHHHHHHhCCCcEeecccCCHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999875556888899999988766789999999999988899999
Q ss_pred HHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCCCcccccCCCCCCccccccccCC
Q 020528 165 GPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLD 244 (325)
Q Consensus 165 ~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d 244 (325)
++||++|+.+.||+||+|+|+||+++|++++||+.+|++|||+|||++++++..+++.++.+++++.+..|..+..+.+|
T Consensus 162 a~Ei~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep~~s~~~~~g~~~~~~~~glg~~~~~~~~~~~~vd 241 (322)
T PLN02565 162 GPEIWKGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVDLLD 241 (322)
T ss_pred HHHHHHhcCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEecCCCccccCCCCCCccCCCCCCCCCCCcCCHhHCC
Confidence 99999999768999999999999999999999999999999999999999988777777888999887777777778899
Q ss_pred eEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhHHHHHHhcCCCCC
Q 020528 245 ETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFESVKKEAESMVFE 324 (325)
Q Consensus 245 ~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~~~~~~~~~~~~~ 324 (325)
+.+.|+|+|+++++++|++++|+++||+||+++++++++++....++++||+|+||+|.||+++++|+.+..+..|++|+
T Consensus 242 ~~v~V~d~ea~~a~~~l~~~~gi~vg~ssga~laaa~~~a~~~~~~~~~vV~v~~d~G~ky~~~~~~~~~~~~~~~~~~~ 321 (322)
T PLN02565 242 EVVQVSSDEAIETAKLLALKEGLLVGISSGAAAAAAIKIAKRPENAGKLIVVIFPSFGERYLSSVLFESVKKEAENMVFE 321 (322)
T ss_pred EEEEECHHHHHHHHHHHHHHhCcEEeccHHHHHHHHHHHHHhcCCCCCeEEEEECCCccccCCchhhHHHHHHHhcCccC
Confidence 99999999999999999999999999999999999999987664568899999999999999999999999999999998
Q ss_pred C
Q 020528 325 P 325 (325)
Q Consensus 325 ~ 325 (325)
|
T Consensus 322 ~ 322 (322)
T PLN02565 322 P 322 (322)
T ss_pred C
Confidence 7
No 2
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-70 Score=486.40 Aligned_cols=295 Identities=60% Similarity=0.969 Sum_probs=280.2
Q ss_pred HHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHH
Q 020528 10 KDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMA 89 (325)
Q Consensus 10 ~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a 89 (325)
+.+.+.+|+|||+++.+++...+++||+|+|++||+||.|||.|.+++.+|+++|.++|| .+||++||||+|++||+.|
T Consensus 3 ~~~~~~iG~TPlvrL~~~~~~~~~~i~~KlE~~NP~gSvKDR~A~~mI~~Ae~~G~l~pG-~tIVE~TSGNTGI~LA~va 81 (300)
T COG0031 3 ESILDLIGNTPLVRLNRLSPGTGVEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLLKPG-GTIVEATSGNTGIALAMVA 81 (300)
T ss_pred cchHHHhCCCCcEeecccCCCCCceEEEEhhhcCCCCchhHHHHHHHHHHHHHcCCCCCC-CEEEEcCCChHHHHHHHHH
Confidence 457888999999999999887788999999999999999999999999999999999999 5799999999999999999
Q ss_pred HHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCC-hhHHHHHHHHHHHhCCC-eEEeCCCCCCcchHhHHhchHHH
Q 020528 90 AAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG-MKGAVQKAEEIRDKTPN-SYVLQQFENPANPKIHYETTGPE 167 (325)
Q Consensus 90 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~-~~~~~~~a~~~~~~~~~-~~~~~~~~n~~~~~~g~~t~~~E 167 (325)
+.+|++++++||++++.+|+++|++|||+|+.++...+ +..+.+++++++++.++ .++.+||+||.||.+|+.+++.|
T Consensus 82 a~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~~~g~~~~a~~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~~tT~~E 161 (300)
T COG0031 82 AAKGYRLIIVMPETMSQERRKLLRALGAEVILTPGAPGNMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTGPE 161 (300)
T ss_pred HHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCCCCCchHHHHHHHHHHHHhCCCceEchhhcCCCccHHHHHhhhHHH
Confidence 99999999999999999999999999999999998444 78899999999999887 77888999999999999999999
Q ss_pred HHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCCCcccccCCCCCCccccccccCCeEE
Q 020528 168 IWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETV 247 (325)
Q Consensus 168 i~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~ 247 (325)
|++|+++.+|+||+++|||||++|++++||+.+|++|+++|||++|+.+..|. .++.++||+.+++|..++.+++|+++
T Consensus 162 I~~~~~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S~~~~~G~-g~~~i~GIG~~~ip~~~~~~~iD~v~ 240 (300)
T COG0031 162 IWQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLSGGE-GPHKIEGIGAGFVPENLDLDLIDEVI 240 (300)
T ss_pred HHHHhCCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCCcccCCCC-CCcccCCCCCCcCCcccccccCceEE
Confidence 99999888999999999999999999999999999999999999999887666 88999999999999889999999999
Q ss_pred EeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcc
Q 020528 248 QISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLS 307 (325)
Q Consensus 248 ~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~ 307 (325)
.|+|+|+++.+++|+++||+++++|||++++++++++++.. ++++||+|+||+|+||+|
T Consensus 241 ~V~d~~A~~~~r~La~~eGilvG~SsGA~~~aa~~~a~~~~-~g~~IVti~pD~G~RYls 299 (300)
T COG0031 241 RVSDEEAIATARRLAREEGLLVGISSGAALAAALKLAKELP-AGKTIVTILPDSGERYLS 299 (300)
T ss_pred EECHHHHHHHHHHHHHHhCeeecccHHHHHHHHHHHHHhcC-CCCeEEEEECCCcccccC
Confidence 99999999999999999999999999999999999988764 689999999999999987
No 3
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=100.00 E-value=8.4e-70 Score=505.85 Aligned_cols=318 Identities=62% Similarity=1.036 Sum_probs=294.0
Q ss_pred hhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHH
Q 020528 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAF 87 (325)
Q Consensus 8 ~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~ 87 (325)
+.+++.+.+|+|||+++++++...|++||+|+|++|||||||||++.+++.+++++|.+.||.++||++|+||||+|+|+
T Consensus 49 ~~~~v~~~ig~TPl~~l~~l~~~~g~~I~~KlE~~nPtGS~KdR~A~~~l~~a~~~G~i~pG~~~vV~aSsGN~G~alA~ 128 (368)
T PLN02556 49 IKTDASQLIGKTPLVYLNKVTEGCGAYIAAKQEMFQPTSSIKDRPALAMIEDAEKKNLITPGKTTLIEPTSGNMGISLAF 128 (368)
T ss_pred hhhhHHHhcCCCccEEccccccccCCEEEEEecccCCccchHHHHHHHHHHHHHHcCCcCCCCCEEEEeCCchHHHHHHH
Confidence 45788999999999999999877788999999999999999999999999999999999999888999999999999999
Q ss_pred HHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHH
Q 020528 88 MAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPE 167 (325)
Q Consensus 88 ~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~E 167 (325)
+|+.+|++|+|+||++++..|+++++.+||+|+.++...++...++.+++++++.+++++++||+|+.|+..||.++++|
T Consensus 129 ~a~~~G~~~~ivvp~~~~~~k~~~lr~~GA~Vi~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~np~~~~~g~~ttg~E 208 (368)
T PLN02556 129 MAAMKGYKMILTMPSYTSLERRVTMRAFGAELVLTDPTKGMGGTVKKAYELLESTPDAFMLQQFSNPANTQVHFETTGPE 208 (368)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCccHHHHHHHHHHHhcCCCCccCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999864445678888888888877889999999999966799999999
Q ss_pred HHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCCCcccccCCCCCCccccccccCCeEE
Q 020528 168 IWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETV 247 (325)
Q Consensus 168 i~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~ 247 (325)
|++|+.+.+|+||+|+|+||+++|+++++|+.+|++|||+|||++++.+..+.+..+.+.+++.+..|+.++.+.+|+++
T Consensus 209 I~eq~~~~~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVigVep~~~~~~~~g~~~~~~i~g~g~~~~p~~~~~~~~d~~v 288 (368)
T PLN02556 209 IWEDTLGQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVEPAESNVLNGGKPGPHHITGNGVGFKPDILDMDVMEKVL 288 (368)
T ss_pred HHHhcCCCCCEEEEcCCcchHHHHHHHHHHHhCCCCEEEEEeeCCCccccCCCCCCeeeeeccCCCCccccchhhCCeEE
Confidence 99998668999999999999999999999999999999999999998887777777777888877767778888899999
Q ss_pred EeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhHHHHHHhcCCCCCC
Q 020528 248 QISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFESVKKEAESMVFEP 325 (325)
Q Consensus 248 ~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~~~~~~~~~~~~~~ 325 (325)
.|+|+|+++++++|++++|+++||+||++++++++++++...++++||+|+||+|.||+|+++|++|.++..+++|+|
T Consensus 289 ~Vsd~ea~~a~r~l~~~eGi~vg~ssgA~~~aal~~a~~~~~~~~~IV~v~~d~g~kY~~~~~~~~~~~~~~~~~~~~ 366 (368)
T PLN02556 289 EVSSEDAVNMARELALKEGLMVGISSGANTVAALRLAKMPENKGKLIVTVHPSFGERYLSSVLFQELRKEAENMQPVS 366 (368)
T ss_pred EECHHHHHHHHHHHHHHcCCEEecCHHHHHHHHHHHhhhccCCcCEEEEEECCCCcccCChhhhHHHHHHHHhcCCcC
Confidence 999999999999999999999999999999999988776544688999999999999999999999999999999986
No 4
>PLN00011 cysteine synthase
Probab=100.00 E-value=1.3e-67 Score=486.10 Aligned_cols=318 Identities=71% Similarity=1.119 Sum_probs=289.3
Q ss_pred chhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHH
Q 020528 7 VIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLA 86 (325)
Q Consensus 7 ~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA 86 (325)
.+.+++.+.+++|||+++++++...+.+||+|+|++|||||||||++.+++..++++|.+.||.++||++|+||||+|+|
T Consensus 6 ~~~~~~~~~~g~TPl~~l~~l~~~~g~~i~~K~E~~nPtGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~alA 85 (323)
T PLN00011 6 LIKNDVTELIGNTPMVYLNNIVDGCVARIAAKLEMMEPCSSVKDRIAYSMIKDAEDKGLITPGKSTLIEATAGNTGIGLA 85 (323)
T ss_pred hHHhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccccchHHHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHH
Confidence 35567888999999999999886666799999999999999999999999999999999988877899999999999999
Q ss_pred HHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHH
Q 020528 87 FMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGP 166 (325)
Q Consensus 87 ~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~ 166 (325)
++|+.+|++|+||||++++..|+++++.+||+|+.++...+.+++.+.+++++++.+++++++||+|+.|+..||.++++
T Consensus 86 ~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~n~~n~~~~~~t~~~ 165 (323)
T PLN00011 86 CIGAARGYKVILVMPSTMSLERRIILRALGAEVHLTDQSIGLKGMLEKAEEILSKTPGGYIPQQFENPANPEIHYRTTGP 165 (323)
T ss_pred HHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCcChHHHHHHHHHHHHhCCCeEEeccccCCccHHHHHHHHHH
Confidence 99999999999999999999999999999999999997544556788888888876678999999999988789999999
Q ss_pred HHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCCCcccccCCCCCCccccccccCCeE
Q 020528 167 EIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDET 246 (325)
Q Consensus 167 Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~ 246 (325)
||++|+.++||+||+|+|+||+++|+++++|+.+|++|||+|||++++++..+++..+.+++++.+..|..+....+|+.
T Consensus 166 EI~~q~~~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvigVe~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~ 245 (323)
T PLN00011 166 EIWRDSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVESAVLSGGQPGPHLIQGIGSGIIPFNLDLTIVDEI 245 (323)
T ss_pred HHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEEEecCCCcccCCCCCCCCCCCCCCCCCCCcccChhhCCeE
Confidence 99999866899999999999999999999999999999999999999988877777777889988766777777889999
Q ss_pred EEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhHHHHHHhcCCCCC
Q 020528 247 VQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFESVKKEAESMVFE 324 (325)
Q Consensus 247 ~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~~~~~~~~~~~~~ 324 (325)
+.|+|+|++++++++++++|+++||+||++++++++++++...++++||+|+||+|+||+|+.+|+.|..+.++++.+
T Consensus 246 v~V~d~e~~~a~~~l~~~~Gi~~~~ssga~laaa~~~~~~~~~~~~~vv~i~~d~G~ky~~~~~~~~~~~~~~~~~~~ 323 (323)
T PLN00011 246 IQVTGEEAIETAKLLALKEGLLVGISSGAAAAAALKVAKRPENAGKLIVVIFPSGGERYLSTKLFESVRYEAENLPIE 323 (323)
T ss_pred EEECHHHHHHHHHHHHHhcCCeEcccHHHHHHHHHHHHHhccCCCCeEEEEECCCccccCChhhhHHHHHhhhcCCCC
Confidence 999999999999999999999999999999999999877643467899999999999999999999988877887653
No 5
>PLN03013 cysteine synthase
Probab=100.00 E-value=9.8e-68 Score=494.10 Aligned_cols=302 Identities=73% Similarity=1.167 Sum_probs=279.6
Q ss_pred hhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHH
Q 020528 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAF 87 (325)
Q Consensus 8 ~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~ 87 (325)
+.+++.+.+|+|||++++.++...+++||+|+|++|||||||||+|.+++.+++++|.+.+|+.+||++|+||||+|+|+
T Consensus 113 ~~~~i~~~iG~TPLv~l~~l~~~~g~~Iy~KlE~lNPtGSfKdR~A~~~l~~a~~~G~l~pG~~~VVeaSSGN~G~ALA~ 192 (429)
T PLN03013 113 IADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAF 192 (429)
T ss_pred HHHHHHhcCCCCCeEECcccccccCCeEEEEeccCCCccccHHHHHHHHHHHHHHcCCcCCCCcEEEEECCcHHHHHHHH
Confidence 56889999999999999999877778999999999999999999999999999999999998778999999999999999
Q ss_pred HHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHH
Q 020528 88 MAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPE 167 (325)
Q Consensus 88 ~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~E 167 (325)
+|+.+|++++||||++++..|+++|+.+||+|+.+++..+++++.+.+++++++.++++|++||+|+.|+..||+++|+|
T Consensus 193 ~a~~~G~~~~VvvP~~~s~~K~~~ira~GAeVi~v~~~~~~~~a~~~A~ela~~~~g~~~~~qy~Np~n~~ah~~ttg~E 272 (429)
T PLN03013 193 IAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPE 272 (429)
T ss_pred HHHHcCCCEEEEECCCCcHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHhhcCCeEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999876557788999999988866789999999999977899999999
Q ss_pred HHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCCCcccccCCCCCCccccccccCCeEE
Q 020528 168 IWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETV 247 (325)
Q Consensus 168 i~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~ 247 (325)
|++|+.++||+||+|+|+||+++|++++||+.+|++|||+|||++++.+..+++.++.++|++.+.+|+.++++.+|+++
T Consensus 273 I~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVep~gs~~l~~g~~~~~~i~Glg~~~ip~~~~~~~vD~vv 352 (429)
T PLN03013 273 IWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFIPKNLDQKIMDEVI 352 (429)
T ss_pred HHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEEeCCCchhhCCCCCCcccCcccCCcCCHhHHHHhccEEE
Confidence 99999778999999999999999999999999999999999999999887777778888999988888888888999999
Q ss_pred EeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEE-EEEeCCCCCCCcchh
Q 020528 248 QISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLI-VVVFPSFGERYLSSV 309 (325)
Q Consensus 248 ~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~v-v~i~t~~g~~~~~~~ 309 (325)
.|+|+|+++++++|++++|+++||++|++++++++++++...++++| |++.+++|++|+++.
T Consensus 353 ~VsD~ea~~a~r~La~~eGi~vG~SSGAalaAalkla~~~~~~g~~IVv~i~~d~g~~Y~~~~ 415 (429)
T PLN03013 353 AISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRPENAGKLIAVSLFASGRDIYTPRC 415 (429)
T ss_pred EECHHHHHHHHHHHHHHcCCEEecCHHHHHHHHHHHhhhccCCCCEEEEEEcCCCchhchhhh
Confidence 99999999999999999999999999999999999877544456665 667788899999983
No 6
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=100.00 E-value=1.5e-65 Score=468.67 Aligned_cols=297 Identities=65% Similarity=1.040 Sum_probs=271.6
Q ss_pred hhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHc
Q 020528 13 TELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAK 92 (325)
Q Consensus 13 ~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~ 92 (325)
...+++|||++++.|+...+.+||+|+|++|||||||+|++.+++..+.++|.+.+| .+|+++|+||||+|+|++|+.+
T Consensus 2 ~~~vg~TPL~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~~ 80 (299)
T TIGR01136 2 EELIGNTPLVRLNRLAPGCDARVLAKLEGRNPSGSVKDRIALSMIEDAEKRGLLKPG-DTIIEATSGNTGIALAMVAAAK 80 (299)
T ss_pred ccccCCCceEEccccCCCCCceEEEEEcccCCCCCccHHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHHHHHHHc
Confidence 356899999999999987788999999999999999999999999999999987776 4689999999999999999999
Q ss_pred CCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHHHHhhh
Q 020528 93 GYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGT 172 (325)
Q Consensus 93 g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~ql 172 (325)
|++|+||||++++..|+++++.+||+|+.++++.+++++.+.+++++++.+++++++||+|+.|++.||+++++||++|+
T Consensus 81 G~~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql 160 (299)
T TIGR01136 81 GYKLILTMPETMSLERRKLLRAYGAELILTPAEEGMKGAIDKAEELAAETNKYVMLDQFENPANPEAHYKTTGPEIWRDT 160 (299)
T ss_pred CCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhhCCCeEecCCCCCchhHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999997655788999999998886568899999999988889999999999999
Q ss_pred CCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCCCcccccCCCCCCccccccccCCeEEEeCHH
Q 020528 173 GGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSE 252 (325)
Q Consensus 173 ~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~v~d~ 252 (325)
++.||+||+|+|+||+++|++.+||+.+|.+||++|||++++++..+.+....+.+++.+..|+.+.++++|+.+.|+|+
T Consensus 161 ~~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~d~~~~V~d~ 240 (299)
T TIGR01136 161 DGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEPAESPVLSGGEPGPHKIQGIGAGFIPKILDLSLIDEVITVSDE 240 (299)
T ss_pred CCCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEEecCCCccccCCCCCCccCCCCCCCCCCccCChhhCCEEEEECHH
Confidence 66799999999999999999999999999999999999999888766665566777877767878888889999999999
Q ss_pred HHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhh
Q 020528 253 EAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVL 310 (325)
Q Consensus 253 e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~ 310 (325)
|+++++++|++++|+++||+||+++++++++.++...++++||+|+||+|.||+|+..
T Consensus 241 e~~~a~~~l~~~~gi~~e~ssaa~~a~~~~~~~~~~~~~~~vv~i~~d~g~ky~~~~~ 298 (299)
T TIGR01136 241 DAIETARRLAREEGILVGISSGAAVAAALKLAKRLENADKVIVAILPDTGERYLSTGL 298 (299)
T ss_pred HHHHHHHHHHHHhCceEcchHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccCccc
Confidence 9999999999999999999999999999998876434588999999999999999743
No 7
>PRK11761 cysM cysteine synthase B; Provisional
Probab=100.00 E-value=2.6e-65 Score=464.97 Aligned_cols=294 Identities=45% Similarity=0.741 Sum_probs=262.3
Q ss_pred hhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHH
Q 020528 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAF 87 (325)
Q Consensus 8 ~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~ 87 (325)
.+++|...+++|||+++++|+...|.+||+|+|++|||||||||++.+++.++.++|.+.+| .+||++|+||||+|+|+
T Consensus 2 ~~~~i~~~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g-~~vv~aSsGN~g~alA~ 80 (296)
T PRK11761 2 AYPTLEDTIGNTPLVKLQRLPPDRGNTILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPG-DTLIEATSGNTGIALAM 80 (296)
T ss_pred ccccHHHhcCCCceEeccccccCCCCEEEEEEcccCCCCCchhHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHHH
Confidence 46778889999999999999877778999999999999999999999999999999988777 56999999999999999
Q ss_pred HHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHH
Q 020528 88 MAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPE 167 (325)
Q Consensus 88 ~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~E 167 (325)
+|+.+|++|+||||++++..|+++++.+||+|+.++...+++++.+.+++++++. +++|++||+|+.|+..||+++++|
T Consensus 81 ~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~n~~~~~~~~~t~~~E 159 (296)
T PRK11761 81 IAAIKGYRMKLIMPENMSQERRAAMRAYGAELILVPKEQGMEGARDLALQMQAEG-EGKVLDQFANPDNPLAHYETTGPE 159 (296)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhcc-CCEecCCCCChhhHHHHhhchHHH
Confidence 9999999999999999999999999999999999996546788888888888776 789999999999988899999999
Q ss_pred HHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCCCcccccCCCCCCccccccccCCeEE
Q 020528 168 IWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETV 247 (325)
Q Consensus 168 i~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~ 247 (325)
|++|+.+.+|+||+|+|+||+++|++++||+.+|.+|||+|||++++++.+ +.++.....+..++...+|+++
T Consensus 160 i~eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVep~~~~~i~g-------~~~~~~~~~~~~~~~~~vd~~v 232 (296)
T PRK11761 160 IWRQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPEEGSSIPG-------IRRWPEEYLPKIFDASRVDRVL 232 (296)
T ss_pred HHHhcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEecCCCCcCcC-------CCCCCCCcCCcccChhhCCEEE
Confidence 999996679999999999999999999999999999999999998876632 1122122234455567889999
Q ss_pred EeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhH
Q 020528 248 QISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFE 312 (325)
Q Consensus 248 ~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~ 312 (325)
.|+|+|+++++++|++++|+++||+||+++++++++++. .++++||+|+||+|.||+++..|+
T Consensus 233 ~V~d~e~~~a~~~l~~~~gi~ve~ssga~laaa~~~~~~--~~~~~vV~v~~d~g~ky~~~~~~~ 295 (296)
T PRK11761 233 DVSQQEAENTMRRLAREEGIFCGVSSGGAVAAALRIARE--NPNAVIVAIICDRGDRYLSTGVFP 295 (296)
T ss_pred EECHHHHHHHHHHHHHHhCceEchhHHHHHHHHHHHHHH--CCCCeEEEEECCCCcccCChhccc
Confidence 999999999999999999999999999999999998765 367899999999999999985553
No 8
>PLN02356 phosphateglycerate kinase
Probab=100.00 E-value=5.4e-65 Score=475.58 Aligned_cols=316 Identities=33% Similarity=0.524 Sum_probs=270.4
Q ss_pred ccchhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHH
Q 020528 5 KSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIG 84 (325)
Q Consensus 5 ~~~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a 84 (325)
+.+....+.+.+|+|||+++++|+...|.+||+|+|++|||||||||++.+++..+.++|.+.++ ..|+++||||||+|
T Consensus 40 ~~~~~~~~~~~ig~TPLv~~~~l~~~~g~~v~~KlE~~nPtGS~KdR~A~~~i~~a~~~g~~~~~-g~VveaSSGN~g~a 118 (423)
T PLN02356 40 KKKPRNGLIDAIGNTPLIRINSLSEATGCEILGKCEFLNPGGSVKDRVAVKIIEEALESGQLFPG-GVVTEGSAGSTAIS 118 (423)
T ss_pred ccchhhhHHhhcCCCceEECcccccccCCEEEEEeccCCCCCCHHHHHHHHHHHHHHhCCccCCC-CEEEEeCCHHHHHH
Confidence 45567788899999999999999887788999999999999999999999999999999987676 45788999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC-----CChh-HHH---HHHHHHHHh--------------
Q 020528 85 LAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA-----RGMK-GAV---QKAEEIRDK-------------- 141 (325)
Q Consensus 85 lA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~-----~~~~-~~~---~~a~~~~~~-------------- 141 (325)
+|++|+.+|++|+||||+++++.|+++|+.|||+|+.+++. .++. .+. +.+.+++++
T Consensus 119 lA~~aa~~G~~~~ivvP~~~s~~K~~~ir~~GAeVi~v~~~~~~~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~~~~~~~ 198 (423)
T PLN02356 119 LATVAPAYGCKCHVVIPDDVAIEKSQILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDGIHLEK 198 (423)
T ss_pred HHHHHHHcCCcEEEEECCCCcHHHHHHHHHcCCEEEEECCccCCCcchhHHHHHHHHHHHHHHHHHhhhccccccccccc
Confidence 99999999999999999999999999999999999999641 1221 111 234444433
Q ss_pred ------------------CCCeEEeCCCCCCcchHhHHhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCc
Q 020528 142 ------------------TPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEI 203 (325)
Q Consensus 142 ------------------~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~ 203 (325)
.++++|++||+|+.|+..|+..+|+||++|++++||+||+|+|+||+++|++++||+.+|++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~n~~n~~ahg~gTg~EI~eQl~g~~D~vVv~vGtGGti~Gva~~lK~~~P~v 278 (423)
T PLN02356 199 TNGCISEEEKENSLFSSSCTGGFFADQFENLANFRAHYEGTGPEIWEQTQGNLDAFVAAAGTGGTLAGVSRFLQEKNPNI 278 (423)
T ss_pred cccccccccccccccccCCCCcEecCccCCcchHHHHHhhHHHHHHHhcCCCCCEEEeCCCchHHHHHHHHHHHHhCCCC
Confidence 14678999999999977776667999999997689999999999999999999999999999
Q ss_pred EEEEEecCCCcccc-------------CCC----CCCcccccCCCCCCccccccccCCeEEEeCHHHHHHHHHHHHHHcC
Q 020528 204 KLYGVEPVESAVLS-------------GGK----PGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEG 266 (325)
Q Consensus 204 ~vigV~~~~~~~~~-------------~~~----~~~~~~~gl~~~~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~g 266 (325)
||++|||.+++.+. .|. +.++.++|++.+.+|..++...+|+++.|+|+|++++++++++++|
T Consensus 279 kVigVep~~s~~~~~~~~~~~~~~s~~~G~~~~~~~~tia~Gig~~~~~~~~~~~~vD~~v~Vsd~ea~~a~r~L~~~~G 358 (423)
T PLN02356 279 KCFLIDPPGSGLFNKVTRGVMYTREEAEGRRLKNPFDTITEGIGINRLTQNFLMAKLDGAFRGTDKEAVEMSRYLLKNDG 358 (423)
T ss_pred EEEEEecCCCccccccccchhhhhhhhcCCccCCCCCeecCcCcCCCCChhHhHHhCCcEEEECHHHHHHHHHHHHHHCC
Confidence 99999999986332 122 2256789999888888888889999999999999999999999999
Q ss_pred CeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhHHHHHHhcCCCC
Q 020528 267 LLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFESVKKEAESMVF 323 (325)
Q Consensus 267 i~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~~~~~~~~~~~~ 323 (325)
+++||+||+++++++++++.. .++++||+|+||+|.||+++++.++|+.+ +++.+
T Consensus 359 l~vg~Ssaa~laaa~~la~~~-~~g~~VV~Il~d~G~kyl~~~~~~~w~~~-~~~~~ 413 (423)
T PLN02356 359 LFVGSSSAMNCVGAVRVAQSL-GPGHTIVTILCDSGMRHLSKFHDPQYLSQ-HGLTP 413 (423)
T ss_pred eeEeECHHHHHHHHHHHHHHh-CCCCeEEEEECCCCcchhhhhcCHHHHHh-cCCCC
Confidence 999999999999999987652 36789999999999999999777776664 55543
No 9
>PRK10717 cysteine synthase A; Provisional
Probab=100.00 E-value=1.2e-64 Score=468.62 Aligned_cols=310 Identities=44% Similarity=0.700 Sum_probs=270.2
Q ss_pred hhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHH
Q 020528 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAF 87 (325)
Q Consensus 8 ~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~ 87 (325)
.++++.+.+++|||+++++|+...|.+||+|+|++|||||||||++.+++..++++|.+.+| .+||++|+||||+|+|+
T Consensus 3 ~~~~~~~~~g~TPL~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~v~~a~~~g~~~~g-~~vv~aSsGN~g~alA~ 81 (330)
T PRK10717 3 IFEDVSDTIGNTPLIRLNRASEATGCEILGKAEFLNPGGSVKDRAALNIIWDAEKRGLLKPG-GTIVEGTAGNTGIGLAL 81 (330)
T ss_pred hhhhHHHHhCCCceEEccccCCCCCCeEEEEeeccCCCCCchHHHHHHHHHHHHHcCCCCCC-CEEEEeCCcHHHHHHHH
Confidence 46788999999999999999988888999999999999999999999999999999988776 56999999999999999
Q ss_pred HHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCC------ChhHHHHHHHHHHHhC-CCeEEeCCCCCCcchHhH
Q 020528 88 MAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPAR------GMKGAVQKAEEIRDKT-PNSYVLQQFENPANPKIH 160 (325)
Q Consensus 88 ~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~------~~~~~~~~a~~~~~~~-~~~~~~~~~~n~~~~~~g 160 (325)
+|+++|++|+||||+.+++.|+++++.+||+|+.+++.. ..+.+.+.+.++.++. .+++|++||+||.++..|
T Consensus 82 ~a~~~G~~~~vv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g 161 (330)
T PRK10717 82 VAAARGYKTVIVMPETQSQEKKDLLRALGAELVLVPAAPYANPNNYVKGAGRLAEELVASEPNGAIWANQFDNPANREAH 161 (330)
T ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCcccccccchHHHHHHHHHHHHhhCCCCeEecCCCCChhhHHHH
Confidence 999999999999999999999999999999999998631 1122334444444443 278999999999887789
Q ss_pred HhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc---CCC---CCCcccccCCCCCC
Q 020528 161 YETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS---GGK---PGPHKIQGIGAGFI 234 (325)
Q Consensus 161 ~~t~~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~---~~~---~~~~~~~gl~~~~~ 234 (325)
|.++++||++|++..+|+||+|+|+||+++|++++||+.+|++|||+|||++++.+. .+. ...+.+++++.+..
T Consensus 162 ~~t~a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~Vep~~~~~~~~~~~g~~~~~~~~~~~gl~~~~~ 241 (330)
T PRK10717 162 YETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLADPTGSALYSYYKTGELKAEGSSITEGIGQGRI 241 (330)
T ss_pred HHhHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEcCCCCccccccccCCcCCCCCcccCcCCCCcC
Confidence 999999999999767999999999999999999999999999999999999985432 122 23467788887776
Q ss_pred ccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhHHH
Q 020528 235 PGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFESV 314 (325)
Q Consensus 235 ~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~~~ 314 (325)
++.+....+|+++.|+|+|++++++++++++|+++||+||+++++++++++.. .++++||+|+||+|+||+++++.|+|
T Consensus 242 ~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~vepssga~laa~~~l~~~~-~~~~~Vv~v~~g~g~ky~~~~~~d~~ 320 (330)
T PRK10717 242 TANLEGAPIDDAIRIPDEEALSTAYRLLEEEGLCLGGSSGINVAAALRLAREL-GPGHTIVTILCDSGERYQSKLFNPDF 320 (330)
T ss_pred CcccChhhCCEEEEECHHHHHHHHHHHHHhcCCeEeecHHHHHHHHHHHHHhc-CCCCEEEEEECCCchhhcccccCHHH
Confidence 77666667899999999999999999999999999999999999999987653 46789999999999999999888888
Q ss_pred HHHhc
Q 020528 315 KKEAE 319 (325)
Q Consensus 315 ~~~~~ 319 (325)
..+..
T Consensus 321 ~~~~~ 325 (330)
T PRK10717 321 LREKG 325 (330)
T ss_pred HHhcC
Confidence 87653
No 10
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=100.00 E-value=2.1e-64 Score=461.05 Aligned_cols=294 Identities=65% Similarity=1.048 Sum_probs=266.5
Q ss_pred hhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHc
Q 020528 13 TELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAK 92 (325)
Q Consensus 13 ~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~ 92 (325)
...+++|||+++++ ....+.+||+|+|++|||||||||++.+++..+.++|.+.+| .+|+++|+||||+|+|++|+++
T Consensus 2 ~~~~g~TPl~~~~~-~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~~ 79 (298)
T TIGR01139 2 SELIGNTPLVRLNR-IEGCNANVFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPG-KTIVEPTSGNTGIALAMVAAAR 79 (298)
T ss_pred ccccCCCceEEccc-cCCCCceEEEEEcccCCCCcchHHHHHHHHHHHHHcCCCCCC-CEEEEeCCChhHHHHHHHHHHc
Confidence 45789999999998 445678999999999999999999999999999999987776 5689999999999999999999
Q ss_pred CCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCC-eEEeCCCCCCcchHhHHhchHHHHHhh
Q 020528 93 GYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPN-SYVLQQFENPANPKIHYETTGPEIWKG 171 (325)
Q Consensus 93 g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~n~~~~~~g~~t~~~Ei~~q 171 (325)
|++|+||+|+++++.|+++++.+||+|+.++++.+++++.+.+++++++.++ +++++||+|+.|++.||+++++||++|
T Consensus 80 Gl~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q 159 (298)
T TIGR01139 80 GYKLILTMPETMSIERRKLLKAYGAELVLTPGAEGMKGAIAKAEEIAASTPNSYFMLQQFENPANPEIHRKTTGPEIWRD 159 (298)
T ss_pred CCeEEEEeCCccCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCcEEcccccCCcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999754456788889988887743 568999999998889999999999999
Q ss_pred hCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCCCcccccCCCCCCccccccccCCeEEEeCH
Q 020528 172 TGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISS 251 (325)
Q Consensus 172 l~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~v~d 251 (325)
+++.||+||+|+|+||+++|++++|++.+|++|||+|||.+++.+...++..+.+++++.+..|..+++..+|+++.|+|
T Consensus 160 ~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~V~d 239 (298)
T TIGR01139 160 TDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEPAESPVLSGGKPGPHKIQGIGAGFIPKNLNRSVIDEVITVSD 239 (298)
T ss_pred hCCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEEecCCCcccCCCCCCCCCCCCCCCCCCCCccChhhCCEEEEECH
Confidence 96679999999999999999999999999999999999999988876666667778888777777777888999999999
Q ss_pred HHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchh
Q 020528 252 EEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSV 309 (325)
Q Consensus 252 ~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~ 309 (325)
+|+++++++|++++|+++||+||+++++++++.+.. .++++||+++||+|.||+|+.
T Consensus 240 ~e~~~a~~~l~~~~gi~~~pssga~laa~~~~~~~~-~~~~~vv~v~~d~G~ky~~~~ 296 (298)
T TIGR01139 240 EEAIETARRLAAEEGILVGISSGAAVAAALKLAKRP-EPDKLIVVILPSTGERYLSTP 296 (298)
T ss_pred HHHHHHHHHHHHhcCceEcccHHHHHHHHHHHHHhc-CCCCEEEEEECCCCccccCcc
Confidence 999999999999999999999999999999987753 267899999999999999974
No 11
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=100.00 E-value=6.4e-66 Score=454.00 Aligned_cols=314 Identities=68% Similarity=1.098 Sum_probs=296.0
Q ss_pred hhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHH
Q 020528 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAF 87 (325)
Q Consensus 8 ~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~ 87 (325)
....+.+.+|+|||++++++..++.++||+|+|.+||+||.|||.++.|+..|+++|.+.||+++|+++||||+|.++|+
T Consensus 42 ~~~~~~~liG~TPlv~ln~i~~g~~~~i~~K~E~~~p~~SvKdRia~sMi~~Ae~~G~i~pg~stliEpTSGNtGigLA~ 121 (362)
T KOG1252|consen 42 ILWDVRDLIGNTPLVKLNKIAGGCVARIAAKLEYMNPGGSVKDRIAWSMIEDAEKKGLITPGKSTLIEPTSGNTGIGLAY 121 (362)
T ss_pred hhhhHHHHhCCCceEEeccccCCccceEEEEeeecCCcccHHHHHHHHHHHHHHHcCCccCCceEEEecCCCchHHHHHH
Confidence 55778899999999999999888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhH---HHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhch
Q 020528 88 MAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKG---AVQKAEEIRDKTPNSYVLQQFENPANPKIHYETT 164 (325)
Q Consensus 88 ~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~ 164 (325)
+|+..|++|+++||+.++.+|+.+|+++||+|+.++....++. +...+.++..+.++.+.++||.||.|+..||.++
T Consensus 122 ~~a~~Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii~tp~a~~~~~~e~ai~~a~~l~~~~pna~~l~Qf~np~Np~~hy~tt 201 (362)
T KOG1252|consen 122 MAALRGYKCIITMPEKMSKEKRILLRALGAEIILTPPAAGMKGPESAIGKAEELLNKTPNAYILDQFHNPGNPLAHYETT 201 (362)
T ss_pred HHHHcCceEEEEechhhhHHHHHHHHHcCCEEEecChHHccCChHHHHHHHHHHHHhCCChHHHHHhcCCCCcccccccc
Confidence 9999999999999999999999999999999999997655665 8889999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCCC--cccccCCCCCCcccccccc
Q 020528 165 GPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGP--HKIQGIGAGFIPGVLDVNL 242 (325)
Q Consensus 165 ~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~~~--~~~~gl~~~~~~~~~~~~~ 242 (325)
+.||++|+.+++|.+|.++|||||++|+.+++|+.+|+++|++|+|..|..+..+.+.+ +.++||+.++.|..++.+.
T Consensus 202 g~EI~~q~~g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~~~~~~~g~~~~~I~GIGyg~~p~~ld~~~ 281 (362)
T KOG1252|consen 202 GPEIWRQLDGKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIVLSGGKPGPTFHKIQGIGYGFIPTTLDTKL 281 (362)
T ss_pred cHHHHHHhcCCCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCcceeccCCCCCCCccceeccccCcCccccchHH
Confidence 99999999999999999999999999999999999999999999999998888777777 8899999999999999999
Q ss_pred CCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhHHHHHHhcCC
Q 020528 243 LDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFESVKKEAESM 321 (325)
Q Consensus 243 ~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~~~~~~~~~~ 321 (325)
+|+.+.+.++|++.++++++.+||++++.|||++++++++++++.+..++-+|++++|+|++|+++++||+|.++..++
T Consensus 282 vd~~~~~~~d~A~~~Ar~La~eeGll~G~SSGan~~aAl~~a~~~en~~kliV~~~pd~ge~Y~st~L~d~w~~e~~~~ 360 (362)
T KOG1252|consen 282 VDEVLKVSSDEAIEMARRLALEEGLLVGISSGANVAAALKLAKRPENAGKLIVVTFPDFGERYLSTFLFDEWREEAEKL 360 (362)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhhCeeecccchHHHHHHHHHHhccccCCcEEEEECCCcchhhhhhhhHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999998877666666666599999999999999999887664
No 12
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=100.00 E-value=5.6e-64 Score=455.23 Aligned_cols=288 Identities=43% Similarity=0.756 Sum_probs=257.8
Q ss_pred HhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHHHH
Q 020528 12 VTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAA 91 (325)
Q Consensus 12 i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~ 91 (325)
|...+|+|||+++++|+...|.+||+|+|++|||||||||++.+++..+.++|.+.++ ..||++|+||||+|+|++|+.
T Consensus 2 i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~ 80 (290)
T TIGR01138 2 IEQTVGNTPLVRLQRMGPENGSEVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKPG-DVLIEATSGNTGIALAMIAAL 80 (290)
T ss_pred hHHhCCCCceEEccccccCCCCeEEEEEccCCCCccHHHHHHHHHHHHHHHcCCCCCC-CEEEEECCChHHHHHHHHHHH
Confidence 5667999999999999877778999999999999999999999999999999988777 569999999999999999999
Q ss_pred cCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHHHHhh
Q 020528 92 KGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKG 171 (325)
Q Consensus 92 ~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q 171 (325)
+|++|+||||++.+..|+++++.+||+|+.++...+++++.+.+++++++. +.+|++||+|+.|+..||+++++||++|
T Consensus 81 ~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~~~~~~~~~~~t~~~Ei~~q 159 (290)
T TIGR01138 81 KGYRMKLLMPDNMSQERKAAMRAYGAELILVTKEEGMEGARDLALELANRG-EGKLLDQFNNPDNPYAHYTSTGPEIWQQ 159 (290)
T ss_pred cCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhC-CCCCCCccCCcccHHHHhHhHHHHHHHH
Confidence 999999999999999999999999999999987556888889999998887 4468899999999877899999999999
Q ss_pred hCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCCCcccccCCCCCCccccccccCCeEEEeCH
Q 020528 172 TGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISS 251 (325)
Q Consensus 172 l~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~v~d 251 (325)
+.+.+|+||+|+|+||+++|++++||+.+|++|||+|||.+++.+.+ +.+++.+..|..++...+|+++.|+|
T Consensus 160 ~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Vep~~~~~~~g-------~~~~~~~~~~~~~~~~~~d~~v~V~d 232 (290)
T TIGR01138 160 TGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPEEGSSIPG-------IRRWPTEYLPGIFDASLVDRVLDIHQ 232 (290)
T ss_pred cCCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccC-------CCCCCCCcCCcccChhhCcEEEEECH
Confidence 97689999999999999999999999999999999999999866532 12233333444556677899999999
Q ss_pred HHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhh
Q 020528 252 EEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVL 310 (325)
Q Consensus 252 ~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~ 310 (325)
+|+++++++|++++|+++||+||++++++++++++ .++++||+|+||+|.||+|+.+
T Consensus 233 ~e~~~a~~~l~~~~gi~~g~ssga~laa~~~~~~~--~~~~~vv~v~~d~g~ky~~~~~ 289 (290)
T TIGR01138 233 RDAENTMRELAVREGIFCGVSSGGAVAAALRLARE--LPDAVVVAIICDRGDRYLSTGV 289 (290)
T ss_pred HHHHHHHHHHHHHhCceEcHhHHHHHHHHHHHHHH--CCCCeEEEEECCCCccccCccc
Confidence 99999999999999999999999999999998765 3668999999999999999744
No 13
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=100.00 E-value=1.4e-62 Score=474.18 Aligned_cols=307 Identities=43% Similarity=0.711 Sum_probs=270.9
Q ss_pred HHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHH
Q 020528 10 KDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMA 89 (325)
Q Consensus 10 ~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a 89 (325)
+.+...+++|||+++++|+...+.+||+|+|++|||||||+|+|.+++.++.++|++.+| ++||++|+||||+|+|++|
T Consensus 3 ~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g-~~vv~~ssGN~g~alA~~a 81 (454)
T TIGR01137 3 DNIIDLIGNTPLVRLNKVSKGIKCELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLKPG-DTIIEPTSGNTGIGLALVA 81 (454)
T ss_pred cchHHhcCCCceEEccccCCCCCceEEEEEhhcCCCcchHHHHHHHHHHHHHHcCCCCCC-CEEEEeCCcHHHHHHHHHH
Confidence 456778999999999999987778999999999999999999999999999999998887 6699999999999999999
Q ss_pred HHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChh---HHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHH
Q 020528 90 AAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMK---GAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGP 166 (325)
Q Consensus 90 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~ 166 (325)
+.+|++|+||||++++..|+.+++.+||+|+.+++...++ ...+.+.+++++.++.+|++||+|+.|+..||.++++
T Consensus 82 ~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 161 (454)
T TIGR01137 82 AIKGYKCIIVLPEKMSNEKVDVLKALGAEIVRTPTAAAFDSPESHIGVAKRLVREIPGAHILDQYNNPSNPLAHYDGTGP 161 (454)
T ss_pred HHcCCeEEEEeCCCcCHHHHHHHHHCCCEEEEcCCccCCCchHHHHHHHHHHHHhCCCcEecccCCChhhHHHHHHhhHH
Confidence 9999999999999999999999999999999998642233 2356677777775567889999999998889999999
Q ss_pred HHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCC------CCCcccccCCCCCCcccccc
Q 020528 167 EIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGK------PGPHKIQGIGAGFIPGVLDV 240 (325)
Q Consensus 167 Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~------~~~~~~~gl~~~~~~~~~~~ 240 (325)
||++|+++.||+||+|+|+||+++|+++++|+.+|.+||++|||++++.. .+. ..++.++|++.+..|..+..
T Consensus 162 Ei~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ve~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 240 (454)
T TIGR01137 162 EILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADPEGSILA-QPENLNKTGRTPYKVEGIGYDFIPTVLDR 240 (454)
T ss_pred HHHHHhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEEecCCCccc-CCCcccCCCCCCccCCCCCCCCCCCcCCc
Confidence 99999976899999999999999999999999999999999999998633 221 12345678876666777778
Q ss_pred ccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhHHHHHHh
Q 020528 241 NLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFESVKKEA 318 (325)
Q Consensus 241 ~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~~~~~~~ 318 (325)
+.+|+.+.|+|+|++++++++++++|+++||+||++++++++++++...++++||+++||+|.||++++++++|..+.
T Consensus 241 ~~~d~~~~V~~~e~~~a~~~l~~~~gi~~~~ssg~~~aa~~~~~~~~~~~~~~vv~~~~d~g~~y~~~~~~~~w~~~~ 318 (454)
T TIGR01137 241 KVVDEWIKTDDKESFKMARRLIKEEGLLVGGSSGSAVVAALKAAEDELTEDQVIVVLLPDSIRNYMTKFLNDEWMKDN 318 (454)
T ss_pred hhCCeEEEECHHHHHHHHHHHHHHhCccCcHHHHHHHHHHHHHHHhhcCCCCEEEEEECCCCccccCcccChHHHHhc
Confidence 889999999999999999999999999999999999999999877422467899999999999999998888987764
No 14
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=100.00 E-value=4.2e-62 Score=444.52 Aligned_cols=289 Identities=62% Similarity=0.994 Sum_probs=261.3
Q ss_pred CCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeE
Q 020528 17 GKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRL 96 (325)
Q Consensus 17 ~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~ 96 (325)
|+|||+++++|+...|.+||+|+|++|||||||+|++.+++..+.++|++.++ .+|+++|+||||+|+|++|+++|++|
T Consensus 1 g~TPl~~~~~l~~~~g~~i~~K~E~~~ptgS~K~R~a~~~l~~a~~~g~~~~~-~~vv~~SsGN~g~alA~~a~~~G~~~ 79 (291)
T cd01561 1 GNTPLVRLNRLSPGTGAEIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPG-TTIIEPTSGNTGIGLAMVAAAKGYRF 79 (291)
T ss_pred CCCCEEEccccCCCCCCeEEEEecccCCCCcchHHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHHHHHHHcCCeE
Confidence 68999999999987888999999999999999999999999999999986655 56999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHHHHcCCEEEEeCCCC--ChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHHHHhhhCC
Q 020528 97 IITMPASMSLERRMVLLAFGAELVLTDPAR--GMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGG 174 (325)
Q Consensus 97 ~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~ql~~ 174 (325)
+||||.+++..|+++++.+||+|+.++... +.+++.+.+++++++.++++|++||+||.++..|++++++||.+|+.+
T Consensus 80 ~i~vp~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~g~~~t~~~Ei~~ql~~ 159 (291)
T cd01561 80 IIVMPETMSEEKRKLLRALGAEVILTPEAEADGMKGAIAKARELAAETPNAFWLNQFENPANPEAHYETTAPEIWEQLDG 159 (291)
T ss_pred EEEECCCCCHHHHHHHHHcCCEEEEeCCCCcCCHHHHHHHHHHHHhhCCCcEEecCCCCchHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999743 347888888888877657999999999998544455999999999966
Q ss_pred CCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCCCcccccCCCCCCccccccccCCeEEEeCHHHH
Q 020528 175 KIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEA 254 (325)
Q Consensus 175 ~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~v~d~e~ 254 (325)
.||+||+|+|+||+++|++.+|+...|.+|||+|||++++++.......+.+++|+.+..+..+...++|+++.|+|+|+
T Consensus 160 ~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~V~d~e~ 239 (291)
T cd01561 160 KVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPVGSVLFSGGPPGPHKIEGIGAGFIPENLDRSLIDEVVRVSDEEA 239 (291)
T ss_pred CCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEEecCCCcccCCCCCCCCcCCCCCCCCCCCccCchhCceeEEECHHHH
Confidence 89999999999999999999999999999999999999988854445566778988876677777778999999999999
Q ss_pred HHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcc
Q 020528 255 IETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLS 307 (325)
Q Consensus 255 ~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~ 307 (325)
+++++.+++++|+++||++|++++++++++++.. ++++||+|+||+|.||+|
T Consensus 240 ~~a~~~l~~~~gi~~epssa~a~a~~~~~~~~~~-~~~~vv~v~~~~g~ky~~ 291 (291)
T cd01561 240 FAMARRLAREEGLLVGGSSGAAVAAALKLAKRLG-PGKTIVTILPDSGERYLS 291 (291)
T ss_pred HHHHHHHHHHhCeeEcccHHHHHHHHHHHHHhcC-CCCeEEEEECCCccccCC
Confidence 9999999999999999999999999999877643 678999999999999986
No 15
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-61 Score=435.81 Aligned_cols=301 Identities=24% Similarity=0.310 Sum_probs=265.5
Q ss_pred cchhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHH
Q 020528 6 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGL 85 (325)
Q Consensus 6 ~~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~al 85 (325)
....+++...+.+|||.+++.|++.+|++||+|+|++||+||||.|||++.+..+.+++.. ..+||++|+||||+++
T Consensus 13 ~~A~~ri~~~~~~TPL~~s~~Ls~~~g~~v~lK~E~lQ~~gSFK~RGA~n~i~~Ls~e~~~---~~gViaaSaGNHaQGv 89 (347)
T COG1171 13 LAAAARLKGVVNPTPLQRSPSLSERLGAEIYLKRENLQPVGSFKIRGAYNKLSSLSEEEER---AAGVIAASAGNHAQGV 89 (347)
T ss_pred HHHHHHHhCcccCCCcccchhhHHhhCceEEEeeccCcccccchhhhHHHHHHhcChhhhh---cCceEEecCCcHHHHH
Confidence 3456888899999999999999988999999999999999999999999999987644321 2579999999999999
Q ss_pred HHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchH
Q 020528 86 AFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTG 165 (325)
Q Consensus 86 A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~ 165 (325)
|++|+++|++++||||.++|..|++.++.|||+|+.++. +|+++.+.++++++++ ++.+++||++|+. ++||+|++
T Consensus 90 A~aa~~lGi~a~IvMP~~tp~~Kv~a~r~~GaeVil~g~--~~dda~~~a~~~a~~~-G~~~i~pfD~p~v-iAGQGTi~ 165 (347)
T COG1171 90 AYAAKRLGIKATIVMPETTPKIKVDATRGYGAEVILHGD--NFDDAYAAAEELAEEE-GLTFVPPFDDPDV-IAGQGTIA 165 (347)
T ss_pred HHHHHHhCCCEEEEecCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHHc-CCEEeCCCCCcce-eecccHHH
Confidence 999999999999999999999999999999999999995 7999999999999998 8999999999997 89999999
Q ss_pred HHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCC-C-----CCcccccCCCCC--
Q 020528 166 PEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGK-P-----GPHKIQGIGAGF-- 233 (325)
Q Consensus 166 ~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~----~~~-~-----~~~~~~gl~~~~-- 233 (325)
+||++|+...||+||||+|+||+++|++.++|...|.+|||||||+++++|. .|. + ..++++|+++..
T Consensus 166 lEileq~~~~~d~v~vpvGGGGLisGia~~~k~~~p~~~vIGVEp~~a~~~~~Sl~~G~~~~~~~~~~tiaDG~av~~~g 245 (347)
T COG1171 166 LEILEQLPDLPDAVFVPVGGGGLISGIATALKALSPEIKVIGVEPEGAPSMYASLKAGKIVVVLPDVGTIADGLAVKRPG 245 (347)
T ss_pred HHHHHhccccCCEEEEecCccHHHHHHHHHHHHhCCCCeEEEEeeCCChHHHHHHHcCCceeecCCCCccccccccCCCC
Confidence 9999999555799999999999999999999999999999999999999874 342 1 345668887543
Q ss_pred -CccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhH
Q 020528 234 -IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFE 312 (325)
Q Consensus 234 -~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~ 312 (325)
.++.+.++++|+++.|+|+|+.++|+++++++++++||++|+++|++++...+. .+++++++|+ +|||.++++ +.
T Consensus 246 ~~tf~i~~~~vd~~v~V~e~ei~~am~~l~~~~~iI~EpaGAlalAal~~~~~~~-~~g~~v~~il-SGgN~d~~~--~~ 321 (347)
T COG1171 246 DLTFEILRELVDDIVLVDEDEICAAMRDLFERTKIIAEPAGALALAALLAGKIEP-LQGKTVVVIL-SGGNIDFER--LA 321 (347)
T ss_pred HHHHHHHHHcCCcEEEECHHHHHHHHHHHHhcCCeeccccHHHHHHHHHhhhhhh-cCCCeEEEEe-cCCCCCHHH--HH
Confidence 567788899999999999999999999999999999999999999999876653 4677788888 567766554 55
Q ss_pred HHHHH
Q 020528 313 SVKKE 317 (325)
Q Consensus 313 ~~~~~ 317 (325)
+.++.
T Consensus 322 ~v~~~ 326 (347)
T COG1171 322 EVLER 326 (347)
T ss_pred HHHhc
Confidence 55444
No 16
>PRK12483 threonine dehydratase; Reviewed
Probab=100.00 E-value=9.7e-60 Score=452.98 Aligned_cols=297 Identities=24% Similarity=0.304 Sum_probs=257.9
Q ss_pred HHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHH
Q 020528 10 KDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMA 89 (325)
Q Consensus 10 ~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a 89 (325)
.+|...+++|||+++++|++.+|++||+|+|++|||||||+|+|.+.+..+.+... .++||++|+||||+++|++|
T Consensus 29 ~~i~~~v~~TPL~~~~~Ls~~~g~~IylK~E~lqptGSfK~RGA~n~i~~l~~~~~----~~GVV~aSaGNha~gvA~aA 104 (521)
T PRK12483 29 ARVYDVARETPLQRAPNLSARLGNQVLLKREDLQPVFSFKIRGAYNKMARLPAEQL----ARGVITASAGNHAQGVALAA 104 (521)
T ss_pred HHHhhhcCCCCeeEchhhhHhhCCEEEEEEcCCCCCCchHHHHHHHHHHHhHHHHh----cCcEEEECCCHHHHHHHHHH
Confidence 46778899999999999998888999999999999999999999999987764332 25699999999999999999
Q ss_pred HHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHHHH
Q 020528 90 AAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIW 169 (325)
Q Consensus 90 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~ 169 (325)
+.+|++|+||||.+++..|+.+++.|||+|+.++. +++++.+.+++++++. +++|++||+|+.+ ++||+|+++||+
T Consensus 105 ~~lGi~~~IvmP~~tp~~Kv~~~r~~GAeVil~g~--~~d~a~~~A~~la~e~-g~~~v~pfdd~~v-iaGqgTig~EI~ 180 (521)
T PRK12483 105 ARLGVKAVIVMPRTTPQLKVDGVRAHGGEVVLHGE--SFPDALAHALKLAEEE-GLTFVPPFDDPDV-IAGQGTVAMEIL 180 (521)
T ss_pred HHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCeeeCCCCChHH-HHHHHHHHHHHH
Confidence 99999999999999999999999999999999985 6899999999999887 7899999999987 789999999999
Q ss_pred hhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----CCcccccCCCCC---Cccc
Q 020528 170 KGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKP-----GPHKIQGIGAGF---IPGV 237 (325)
Q Consensus 170 ~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~----~~~~-----~~~~~~gl~~~~---~~~~ 237 (325)
+|+++.||+||+|+|+||+++|++.++|...|++|||||||++++++. .+++ ..+.++|++... .++.
T Consensus 181 eQ~~~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGVep~~a~~~~~sl~~g~~~~~~~~~t~adGiav~~~g~~~~~ 260 (521)
T PRK12483 181 RQHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEPDDSNCLQAALAAGERVVLGQVGLFADGVAVAQIGEHTFE 260 (521)
T ss_pred HHhCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEEeCCCchhhHHHhcCCcccCCCCCceeceeccCCCCHHHHH
Confidence 999657999999999999999999999999999999999999998874 2332 234567776543 2344
Q ss_pred cccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhHHHHHH
Q 020528 238 LDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFESVKKE 317 (325)
Q Consensus 238 ~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~~~~~~ 317 (325)
+.++++|+++.|+|+|+.++++++++++|+++||++|+++|+++++.++...++++||+|+| ||+.++++ +..+.+.
T Consensus 261 ~~~~~vd~vv~Vse~ei~~ai~~l~~~~~i~vEpagAaalAal~~~~~~~~~~g~~VV~Ils-GgNid~~~--l~~i~~r 337 (521)
T PRK12483 261 LCRHYVDEVVTVSTDELCAAIKDIYDDTRSITEPAGALAVAGIKKYAEREGIEGQTLVAIDS-GANVNFDR--LRHVAER 337 (521)
T ss_pred HHHHhCCEEEEECHHHHHHHHHHHHHhCCcEEeHHHHHHHHHHHHHHHhcCCCCCEEEEEeC-CCCCCHHH--HHHHHHH
Confidence 55678999999999999999999999999999999999999999987655456889999985 56655553 5555443
No 17
>PLN02970 serine racemase
Probab=100.00 E-value=5.1e-60 Score=436.41 Aligned_cols=294 Identities=19% Similarity=0.249 Sum_probs=250.9
Q ss_pred ccchhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHH
Q 020528 5 KSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIG 84 (325)
Q Consensus 5 ~~~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a 84 (325)
.....+++...+++|||+++++|++..|.+||+|+|++|||||||||++.+++.++.+++. .++||++|+||||+|
T Consensus 14 i~~a~~~i~~~i~~TPL~~~~~l~~~~g~~i~~K~E~~nptGSfKdRga~~~i~~~~~~~~----~~~vv~aSsGN~g~a 89 (328)
T PLN02970 14 IREARKRIAPFIHRTPVLTSSSLDALAGRSLFFKCECFQKGGAFKFRGACNAIFSLSDDQA----EKGVVTHSSGNHAAA 89 (328)
T ss_pred HHHHHHHHhCcCCCCCeeechhhHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHHhhHhhc----CCeEEEECCcHHHHH
Confidence 3456788889999999999999987778899999999999999999999999999876554 257999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhch
Q 020528 85 LAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETT 164 (325)
Q Consensus 85 lA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~ 164 (325)
+|++|+.+|++|+||||+++++.|+++|+.+||+|+.++. +++.+.+.+++++++. +++|++||+|+.+ +.||+++
T Consensus 90 lA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~la~~~-g~~~~~~~~n~~~-~~g~~t~ 165 (328)
T PLN02970 90 LALAAKLRGIPAYIVVPKNAPACKVDAVIRYGGIITWCEP--TVESREAVAARVQQET-GAVLIHPYNDGRV-ISGQGTI 165 (328)
T ss_pred HHHHHHHcCCCEEEEECCCCCHHHHHHHHhcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcch-hhehHHH
Confidence 9999999999999999999999999999999999999995 5788888899988775 7899999999987 6899999
Q ss_pred HHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----CCcccccCCCCC--
Q 020528 165 GPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKP-----GPHKIQGIGAGF-- 233 (325)
Q Consensus 165 ~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~----~~~~-----~~~~~~gl~~~~-- 233 (325)
++||++|+. .||+||+|+|+||+++|++++||+.+|++|||+|||.+++++. .+.+ ..+..++++.+.
T Consensus 166 g~Ei~~ql~-~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~Vep~~~~~~~~s~~~g~~~~~~~~~tia~gl~~~~~~ 244 (328)
T PLN02970 166 ALEFLEQVP-ELDVIIVPISGGGLISGIALAAKAIKPSIKIIAAEPKGADDAAQSKAAGEIITLPVTNTIADGLRASLGD 244 (328)
T ss_pred HHHHHHhcc-CCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEEEECCCcHHHHHHHcCCceeCCCCCCccccccCCcCH
Confidence 999999994 7999999999999999999999999999999999999998763 2321 133445554431
Q ss_pred CccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhc-CC-CC-CCEEEEEeCCCCCCCcch
Q 020528 234 IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKR-PE-NA-GKLIVVVFPSFGERYLSS 308 (325)
Q Consensus 234 ~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~-~~-~~-~~~vv~i~t~~g~~~~~~ 308 (325)
.++...++.+|+++.|+|+|+++++++|++++|+++||++|++++++++...+ +. .+ +++||+++|+ |+.++++
T Consensus 245 ~~~~~~~~~~d~~v~V~d~e~~~a~~~la~~~gi~ve~s~aa~laaa~~~~~~~~~~~~~~~~vv~v~~G-gn~~~~~ 321 (328)
T PLN02970 245 LTWPVVRDLVDDVITVDDKEIIEAMKLCYERLKVVVEPSGAIGLAAALSDSFRSNPAWKGCKNVGIVLSG-GNVDLGV 321 (328)
T ss_pred HHHHHHHhhCCEEEEECHHHHHHHHHHHHHhcCcEEeHHHHHHHHHHHhCcccccccccCCCeEEEEECC-CCCCHHH
Confidence 12334467789999999999999999999999999999999999997764322 21 23 4789999965 7876665
No 18
>PRK08638 threonine dehydratase; Validated
Probab=100.00 E-value=1.4e-59 Score=433.22 Aligned_cols=299 Identities=24% Similarity=0.316 Sum_probs=254.5
Q ss_pred ccchhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHH
Q 020528 5 KSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIG 84 (325)
Q Consensus 5 ~~~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a 84 (325)
...+++++...+++|||+++++|++..+++||+|+|++|||||||||++.+++.++.+... ..+|+++|+||||.|
T Consensus 14 i~~a~~~i~~~i~~TPlv~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~~~~~~~----~~~vv~~SsGN~g~a 89 (333)
T PRK08638 14 IIEAKQRLAGRIRKTPLPRSNYLSERCKGEIFLKLENMQRTGSFKIRGAFNKLSSLTDAEK----RKGVVACSAGNHAQG 89 (333)
T ss_pred HHHHHHHhhCcCcCCCceechhhHHhhCCeEEEEeccCCccCCcHHHHHHHHHHhccHHhc----CCeEEEeCCcHHHHH
Confidence 4567889999999999999999987777899999999999999999999999998765332 157999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhch
Q 020528 85 LAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETT 164 (325)
Q Consensus 85 lA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~ 164 (325)
+|++|+.+|++|+||||++.+..|+++++.+||+|+.+++ +++++.+.+++++++. +++|++||+|+.+ ++||+++
T Consensus 90 lA~~aa~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~a~~~-g~~~~~~~~~~~~-~~g~~t~ 165 (333)
T PRK08638 90 VALSCALLGIDGKVVMPKGAPKSKVAATCGYGAEVVLHGD--NFNDTIAKVEEIVEEE-GRTFIPPYDDPKV-IAGQGTI 165 (333)
T ss_pred HHHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCEEEEECc--CHHHHHHHHHHHHHhc-CCEEcCcCCCcch-hccccHH
Confidence 9999999999999999999999999999999999999984 6889999999998887 7899999999987 7899999
Q ss_pred HHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCCCC-----cccccCCCCCCc
Q 020528 165 GPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKPGP-----HKIQGIGAGFIP 235 (325)
Q Consensus 165 ~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~----~~~~~~-----~~~~gl~~~~~~ 235 (325)
++||++|+ +++|+||+|+|+||+++|++++||+.+|++|||+|||+++++|. .+++.. +..++++.. .|
T Consensus 166 a~Ei~~q~-~~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigVep~g~~~~~~s~~~g~~~~~~~~~ti~~gl~~~-~p 243 (333)
T PRK08638 166 GLEILEDL-WDVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGVQSENVHGMAASFYAGEITTHRTTGTLADGCDVS-RP 243 (333)
T ss_pred HHHHHhhc-CCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHCCCcccCCCCCCeeccccCC-Cc
Confidence 99999999 57999999999999999999999999999999999999997653 344332 223444333 24
Q ss_pred cccc----cccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhh
Q 020528 236 GVLD----VNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLF 311 (325)
Q Consensus 236 ~~~~----~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~ 311 (325)
..+. ++++|+++.|+|+|+++++++|++++|+++||++|+++|++.........++++||+|+| ||+.++++ +
T Consensus 244 ~~~~~~~~~~~~d~~v~Vsd~ea~~a~~~l~~~~gi~~e~sgA~~~Aa~~~~~~~~~~~~~~vv~v~~-Ggn~~~~~--~ 320 (333)
T PRK08638 244 GNLTYEIVRELVDDIVLVSEDEIRNAMKDLIQRNKVVTEGAGALATAALLSGKLDQYIQNKKVVAIIS-GGNVDLSR--V 320 (333)
T ss_pred cHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCCeechhHHHHHHHHHhCCcccccCCCcEEEEEC-CCCCCHHH--H
Confidence 3333 468999999999999999999999999999999888888876532222236788999996 58888875 5
Q ss_pred HHHHH
Q 020528 312 ESVKK 316 (325)
Q Consensus 312 ~~~~~ 316 (325)
.+++.
T Consensus 321 ~~~~~ 325 (333)
T PRK08638 321 SQITG 325 (333)
T ss_pred HHHHH
Confidence 55543
No 19
>PRK08526 threonine dehydratase; Provisional
Probab=100.00 E-value=9.4e-60 Score=443.77 Aligned_cols=299 Identities=24% Similarity=0.290 Sum_probs=257.7
Q ss_pred ccchhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHH
Q 020528 5 KSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIG 84 (325)
Q Consensus 5 ~~~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a 84 (325)
...+++++...+++|||+++++|++..|++||+|+|++|||||||+|++.+.+..+.+.+. .++||++|+||||++
T Consensus 7 i~~a~~~i~~~i~~TPl~~~~~Ls~~~g~~iylK~E~lqptGSfK~RgA~n~i~~l~~~~~----~~gVV~aSaGNhg~a 82 (403)
T PRK08526 7 IYQAKQRISGFVNKTPFAYAPFLSKISGAEVYLKKENLQITGAYKIRGAYNKIANLSEEQK----QHGVIAASAGNHAQG 82 (403)
T ss_pred HHHHHHHHhCcCCCCCccchHHHHHHhCCeEEEEecCCCCCCCCHHHHHHHHHHhccHhhc----CCEEEEECccHHHHH
Confidence 3567789999999999999999998788899999999999999999999999998876543 257999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhch
Q 020528 85 LAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETT 164 (325)
Q Consensus 85 lA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~ 164 (325)
+|++|+++|++|+||||++++..|+++++.|||+|+.++. +++++...+++++++. +++|++||+|+.+ ++||+|+
T Consensus 83 vA~aa~~~Gi~~~IvmP~~~p~~k~~~~r~~GA~Vv~~g~--~~~~a~~~a~~~a~~~-g~~~v~p~~~~~~-i~G~gti 158 (403)
T PRK08526 83 VAISAKKFGIKAVIVMPEATPLLKVSGTKALGAEVILKGD--NYDEAYAFALEYAKEN-NLTFIHPFEDEEV-MAGQGTI 158 (403)
T ss_pred HHHHHHHcCCCEEEEEcCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEeeCCCCCHHH-HhhhHHH
Confidence 9999999999999999999999999999999999999985 6899999999998886 7899999999986 8999999
Q ss_pred HHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----CCcccccCCCCCC-
Q 020528 165 GPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKP-----GPHKIQGIGAGFI- 234 (325)
Q Consensus 165 ~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~----~~~~-----~~~~~~gl~~~~~- 234 (325)
++||++|+ +.+|+||+|+|+||+++|++.++|..+|++|||||||++++++. .+++ ..+.++|++...+
T Consensus 159 a~EI~eq~-~~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvigVep~~~~~~~~s~~~g~~~~~~~~~tiadgiav~~~~ 237 (403)
T PRK08526 159 ALEMLDEI-SDLDMVVVPVGGGGLISGIASAAKQINPNIKIIGVGAKGAPAMYESFHAKKIINSKSVRTIADGIAVRDAS 237 (403)
T ss_pred HHHHHHhc-CCCCEEEEecChHHHHHHHHHHHHHhCCCCEEEEEEECCCChHHHHHHcCCcccCCCCCceeccccCCCCC
Confidence 99999999 57999999999999999999999999999999999999998763 2332 2355677765421
Q ss_pred cc--ccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhH
Q 020528 235 PG--VLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFE 312 (325)
Q Consensus 235 ~~--~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~ 312 (325)
|. ...++++|+++.|+|+|+.++++++++++|+++||++|+++|++++.... ..++++||+++|+ |+.++++ +.
T Consensus 238 ~~~~~~~~~~vd~~v~V~d~ei~~A~~~l~~~~gi~ve~aga~~lAall~~~~~-~~~~~~Vv~ilsG-Gnid~~~--~~ 313 (403)
T PRK08526 238 PINLAIILECVDDFVQVDDEEIANAILFLLEKQKIVVEGAGAASVAALLHQKID-LKKGKKIGVVLSG-GNIDVQM--LN 313 (403)
T ss_pred HHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCcEeeHHHHHHHHHHHhCccc-cccCCeEEEEECC-CCCCHHH--HH
Confidence 22 23357899999999999999999999999999999999999999753211 1357899999965 7876664 55
Q ss_pred HHHH
Q 020528 313 SVKK 316 (325)
Q Consensus 313 ~~~~ 316 (325)
.+..
T Consensus 314 ~i~~ 317 (403)
T PRK08526 314 IIIE 317 (403)
T ss_pred HHHH
Confidence 5544
No 20
>PRK06352 threonine synthase; Validated
Probab=100.00 E-value=6.1e-60 Score=439.17 Aligned_cols=289 Identities=24% Similarity=0.327 Sum_probs=248.5
Q ss_pred HHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHH
Q 020528 10 KDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMA 89 (325)
Q Consensus 10 ~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a 89 (325)
.++++++|+|||+++++|+...+.+||+|+|++|||||||||++.+++.++.++|. ++||++|+||||+|+|++|
T Consensus 20 ~~~~l~~G~TPL~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~a~~~g~-----~~vV~aSsGN~G~AlA~~a 94 (351)
T PRK06352 20 PMISLAEGNTPLIPLPNLSKELGVTLYGKYEGLNPTGSFKDRGMVMAVAKAKEEGA-----EAVICASTGNTSAAAAAYA 94 (351)
T ss_pred CccccCCCCCCeeEcHhhHHHhCCeEEEEecCCCCccChHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHHHH
Confidence 35788999999999999987777899999999999999999999999999999886 6799999999999999999
Q ss_pred HHcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHHH
Q 020528 90 AAKGYRLIITMPAS-MSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEI 168 (325)
Q Consensus 90 ~~~g~~~~i~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei 168 (325)
+.+|++|+||||++ .+..|+++++.+||+|+.+++ +++++.+.+++++++. +++++++ .|+.+ +.||+++++||
T Consensus 95 a~~G~~~~ivvp~~~~~~~k~~~~~a~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~-~n~~~-~~G~~t~~~EI 169 (351)
T PRK06352 95 TRAGLKAYIVIPEGKVALGKLAQAVMYGADIISIQG--NFDEALKSVRELAETE-AVTLVNS-VNPYR-LEGQKTAAFEI 169 (351)
T ss_pred HHcCCcEEEEEeCCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-CcccccC-CCccc-eeeHHHHHHHH
Confidence 99999999999998 589999999999999999995 5888999999988775 5666664 58887 68999999999
Q ss_pred HhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCC-----cEEEEEecCCCccccCCCCCC---cccccCCCCCCccc--c
Q 020528 169 WKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPE-----IKLYGVEPVESAVLSGGKPGP---HKIQGIGAGFIPGV--L 238 (325)
Q Consensus 169 ~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~-----~~vigV~~~~~~~~~~~~~~~---~~~~gl~~~~~~~~--~ 238 (325)
++|++..||+||+|+|+||+++|++++||+++|. +|||+|||++++++..+.+.. +..+++..+. |.. .
T Consensus 170 ~~Q~~~~~D~vvv~vG~GG~~~Gi~~~lk~~~~~~~~~~~~vi~Vep~g~~~~~~g~~~~~~~~ia~~l~~~~-~~~~~~ 248 (351)
T PRK06352 170 CEQLGSAPDVLAIPVGNAGNISAYWKGFKEWNEAKASGLPRMHGFEAEGAAAIVQGKPIDNPETIATAIRIGN-PASWGL 248 (351)
T ss_pred HHHcCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCCCCCEEEEEeeCCCCHHHhCCCcCCCCcceeEEEeCC-CCcHHH
Confidence 9999767999999999999999999999999887 899999999998776554421 2223443332 222 2
Q ss_pred ccccCC----eEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCC-CCCCEEEEEeCCCCCCCcchh
Q 020528 239 DVNLLD----ETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE-NAGKLIVVVFPSFGERYLSSV 309 (325)
Q Consensus 239 ~~~~~d----~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~-~~~~~vv~i~t~~g~~~~~~~ 309 (325)
..+.+| ..+.|+|+|++++++++++++|+++||+||+++|+++++.+++. .++++||+++||+|+||+++.
T Consensus 249 ~~~~~d~~~g~~~~V~d~e~~~a~r~la~~eGi~vepssaaalAa~~~~~~~~~~~~~~~Vv~v~tg~G~~~~~~~ 324 (351)
T PRK06352 249 AEAARDESGGYIHSVTDDEIVNAYKKIAAQDGVFIEPGSAASLAGVIQHVANGTIKKGETVVCVFTGNGLKDPDTA 324 (351)
T ss_pred HHHHHHHhCCEEEEECHHHHHHHHHHHHhhcCceEchhHHHHHHHHHHHHHcCCCCCCCcEEEEeCCCCcCChHHH
Confidence 223333 48999999999999999999999999999999999999887543 467899999999999999874
No 21
>PRK06608 threonine dehydratase; Provisional
Probab=100.00 E-value=9.5e-60 Score=435.18 Aligned_cols=290 Identities=19% Similarity=0.231 Sum_probs=249.5
Q ss_pred ccchhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHH
Q 020528 5 KSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIG 84 (325)
Q Consensus 5 ~~~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a 84 (325)
...+++++...+++|||+++++|++..|.+||+|+|++|||||||||++.+++.++.++|.+. ++||++|+||||+|
T Consensus 10 i~~A~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~---~~vv~~SsGN~g~a 86 (338)
T PRK06608 10 IAAAHNRIKQYLHLTPIVHSESLNEMLGHEIFFKVESLQKTGAFKVRGVLNHLLELKEQGKLP---DKIVAYSTGNHGQA 86 (338)
T ss_pred HHHHHHHHhCcCcCCCccchHhHHHHhCCEEEEEeCCCCCCCCcHHHHHHHHHHHhhhhcCcC---CeEEEECCCHHHHH
Confidence 355778899999999999999999888889999999999999999999999999999988753 57999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhch
Q 020528 85 LAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETT 164 (325)
Q Consensus 85 lA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~ 164 (325)
+|++|+.+|++|+||||+++++.|+++++.+||+|+.++. .+++.+++++ .++ +++||++||+|+.+ ++|++++
T Consensus 87 lA~~a~~~G~~~~vv~p~~~~~~k~~~l~~~GA~V~~~~~---~~~~~~~a~~-~~~-~~~~~~~~~~~~~~-~~g~~t~ 160 (338)
T PRK06608 87 VAYASKLFGIKTRIYLPLNTSKVKQQAALYYGGEVILTNT---RQEAEEKAKE-DEE-QGFYYIHPSDSDST-IAGAGTL 160 (338)
T ss_pred HHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC---HHHHHHHHHH-HHh-CCCEEcCCCCCHHH-hccHHHH
Confidence 9999999999999999999999999999999999999973 4677777777 444 47899999999887 6899999
Q ss_pred HHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC------CCcccccCCCCCC
Q 020528 165 GPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKP------GPHKIQGIGAGFI 234 (325)
Q Consensus 165 ~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~----~~~~------~~~~~~gl~~~~~ 234 (325)
+.||++|++++||+||+|+|+||+++|+++++|...+.+|||+|||.+++++. .+++ ..+..++++.+..
T Consensus 161 a~Ei~~q~~~~~D~vv~~vG~GGt~~Gi~~~~k~~~~~~~vigVep~~~~~~~~s~~~g~~~~~~~~~~t~~~gl~~~~~ 240 (338)
T PRK06608 161 CYEALQQLGFSPDAIFASCGGGGLISGTYLAKELISPTSLLIGSEPLNANDAYLSLKNNKIYRLNYSPNTIADGLKTLSV 240 (338)
T ss_pred HHHHHHhcCCCcCEEEEeechhHHHHHHHHHHHhcCCCCEEEEEeeCCChHHHHHHHcCCeEeCCCCCCCeecccCCCCC
Confidence 99999999768999999999999999999999999999999999999997642 3321 2345677765432
Q ss_pred cc-ccc-cccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCC
Q 020528 235 PG-VLD-VNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERY 305 (325)
Q Consensus 235 ~~-~~~-~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~ 305 (325)
.. .+. .+.+|+.+.|+|+|++++++++++++|+++||+||+++++++++.++. .++++||+++|| |+++
T Consensus 241 ~~~~~~~~~~~d~~v~Vsd~e~~~a~~~l~~~~gi~vepssaa~laa~~~~~~~~-~~~~~Vv~v~tg-g~~d 311 (338)
T PRK06608 241 SARTFEYLKKLDDFYLVEEYEIYYWTAWLTHLLKVICEPSSAINMVAVVNWLKTQ-SKPQKLLVILSG-GNID 311 (338)
T ss_pred CHHHHHHHHhCCCEEEECHHHHHHHHHHHHHHcCcEEchHHHHHHHHHHhhchhh-cCCCeEEEEeCC-CccC
Confidence 21 122 134799999999999999999999999999999999999999876543 367899999987 5543
No 22
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=100.00 E-value=6.3e-59 Score=426.82 Aligned_cols=293 Identities=23% Similarity=0.238 Sum_probs=248.2
Q ss_pred CCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEE
Q 020528 18 KTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLI 97 (325)
Q Consensus 18 ~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~ 97 (325)
+|||+++++|+...|.+||+|+|++|||||||||++.+++.++.++|. .+ .++||++|+||||.|+|++|+.+|++|+
T Consensus 1 ~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-~~-~~~vv~aSsGN~g~alA~~a~~~G~~~~ 78 (316)
T cd06448 1 KTPLIESTALSKTAGCNVFLKLENLQPSGSFKIRGIGHLCQKSAKQGL-NE-CVHVVCSSGGNAGLAAAYAARKLGVPCT 78 (316)
T ss_pred CCCccccchhhHhhCCeEEEEeccCCCcCChHHHHHHHHHHHHHHhhc-cc-CCeEEEeCCcHHHHHHHHHHHHcCCCEE
Confidence 699999999987777899999999999999999999999999999885 22 2679999999999999999999999999
Q ss_pred EEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHHHHhhhCC--C
Q 020528 98 ITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGG--K 175 (325)
Q Consensus 98 i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~ql~~--~ 175 (325)
||+|+.++..|+++|+.+||+|+.+++. .++++.+.+++++++.++++|++||+|+.+ ..||.++++||++|+.+ .
T Consensus 79 iv~p~~~~~~k~~~l~~~GA~v~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~n~~~-~~g~~t~~~Ei~~q~~~~~~ 156 (316)
T cd06448 79 IVVPESTKPRVVEKLRDEGATVVVHGKV-WWEADNYLREELAENDPGPVYVHPFDDPLI-WEGHSSMVDEIAQQLQSQEK 156 (316)
T ss_pred EEECCCCCHHHHHHHHHcCCEEEEECCc-hHHHHHHHHHHHHhccCCcEEeCCCCCchh-hccccHHHHHHHHHccccCC
Confidence 9999999999999999999999999863 267777778887776557899999999988 68889999999999965 5
Q ss_pred CCEEEEecCCchhHHHHHHHHHhhC-CCcEEEEEecCCCcccc----CCCC-----CCcccccCCCCCCcc---cccccc
Q 020528 176 IDALVSGIGTGGTVTGAGKYLKEHN-PEIKLYGVEPVESAVLS----GGKP-----GPHKIQGIGAGFIPG---VLDVNL 242 (325)
Q Consensus 176 ~D~iv~pvG~Gg~~aGi~~~~k~~~-~~~~vigV~~~~~~~~~----~~~~-----~~~~~~gl~~~~~~~---~~~~~~ 242 (325)
||+||+|+|+||+++|++++||+.+ |+++||+|||++++++. .+++ ..+.++|++.+..+. ...++.
T Consensus 157 ~D~vv~~vG~Gg~~~Gv~~~~k~~~~~~~~ii~Vep~g~~~~~~~~~~g~~~~~~~~~t~a~glg~~~~~~~~~~~~~~~ 236 (316)
T cd06448 157 VDAIVCSVGGGGLLNGIVQGLERNGWGDIPVVAVETEGAHSLNASLKAGKLVTLPKITSVATSLGAKTVSSQALEYAQEH 236 (316)
T ss_pred CCEEEEEeCchHHHHHHHHHHHhcCCCCCEEEEEeeCCChHHHHHHHcCCcEecCCCCchhhccCCCCcCHHHHHHHHhc
Confidence 9999999999999999999999996 99999999999998764 2322 234556787665443 223456
Q ss_pred CCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHH-----hcCC-CCCCEEEEEeCCCCCCCcchhhhHHHHH
Q 020528 243 LDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIA-----KRPE-NAGKLIVVVFPSFGERYLSSVLFESVKK 316 (325)
Q Consensus 243 ~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~-----~~~~-~~~~~vv~i~t~~g~~~~~~~~~~~~~~ 316 (325)
.|+++.|+|+|+++++++|++++|+++||+||++++++++.. +++. .++++||+|+||+...++++ +.++++
T Consensus 237 ~~~~v~Vsd~e~~~a~~~l~~~~gi~~~~ssaa~laa~~~~~~~~~~~~~~~~~~~~Vv~iltg~n~~~~~~--~~~~~~ 314 (316)
T cd06448 237 NIKSEVVSDRDAVQACLRFADDERILVEPACGAALAVVYSGKILDLQLEVLLTPLDNVVVVVCGGSNITLEQ--LKEYKK 314 (316)
T ss_pred CCeEEEECHHHHHHHHHHHHHHcCceechhHHHHHHHHHhCcchhhhcccccCCCCeEEEEECCCCCCCHHH--HHHHHH
Confidence 899999999999999999999999999999999999998532 1112 46889999998866545554 666654
No 23
>PRK08197 threonine synthase; Validated
Probab=100.00 E-value=3.6e-59 Score=440.90 Aligned_cols=289 Identities=26% Similarity=0.235 Sum_probs=251.8
Q ss_pred HHhhhhCCCCceecccccCCCC-ceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHH
Q 020528 11 DVTELIGKTPLVYLNRIVDGCV-ARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMA 89 (325)
Q Consensus 11 ~i~~~~~~TPL~~~~~l~~~~~-~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a 89 (325)
.+++++|+|||+++++|++.+| .+||+|+|++|||||||||++.+++..+.++|. ++||++|+||||+|+|++|
T Consensus 72 ~vslgeG~TPL~~~~~l~~~~G~~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~a 146 (394)
T PRK08197 72 IVSLGEGMTPLLPLPRLGKALGIGRLWVKDEGLNPTGSFKARGLAVGVSRAKELGV-----KHLAMPTNGNAGAAWAAYA 146 (394)
T ss_pred CCccCcCCCCceEhHHHHHHhCCCcEEEEeCCCCCCcCcHHhHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHH
Confidence 4888999999999999987776 599999999999999999999999999999886 7899999999999999999
Q ss_pred HHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHHHH
Q 020528 90 AAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIW 169 (325)
Q Consensus 90 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~ 169 (325)
+.+|++|+||+|++++..|+.+++.+||+|+.+++ +++++.+.+++.+++. ++|+++++.||.+ ++|++|+++||+
T Consensus 147 a~~G~~~~v~vp~~~~~~k~~~~~~~GA~Vi~v~~--~~~~~~~~a~~~~~~~-g~~~~~~~~np~~-ieG~~t~a~Ei~ 222 (394)
T PRK08197 147 ARAGIRATIFMPADAPEITRLECALAGAELYLVDG--LISDAGKIVAEAVAEY-GWFDVSTLKEPYR-IEGKKTMGLELA 222 (394)
T ss_pred HHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CcccccCCCCccc-hhcHHHHHHHHH
Confidence 99999999999999999999999999999999996 5788888888888776 7899999999998 789999999999
Q ss_pred hhhCC-CCCEEEEecCCchhHHHHHHHHHhh-------CCCcEEEEEecCCCccccC----CCC-------CCcccccCC
Q 020528 170 KGTGG-KIDALVSGIGTGGTVTGAGKYLKEH-------NPEIKLYGVEPVESAVLSG----GKP-------GPHKIQGIG 230 (325)
Q Consensus 170 ~ql~~-~~D~iv~pvG~Gg~~aGi~~~~k~~-------~~~~~vigV~~~~~~~~~~----~~~-------~~~~~~gl~ 230 (325)
+|+++ .||+||+|+|+||+++|++++|+++ .+.+|||+|||++++++.. +.. ..+..+++.
T Consensus 223 eQl~~~~pD~vvvpvG~Gg~~~Gi~~~~k~~~~~g~~~~~~p~ii~Vq~~g~~~l~~~~~~g~~~~~~~~~~~tia~gl~ 302 (394)
T PRK08197 223 EQLGWRLPDVILYPTGGGVGLIGIWKAFDELEALGWIGGKRPRLVAVQAEGCAPIVKAWEEGKEESEFWEDAHTVAFGIR 302 (394)
T ss_pred HHcCCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCcCCCCCeEEEEEeCCCCHHHHHHHcCCCccccCCCCCceehhhh
Confidence 99975 4999999999999999999999997 3889999999999987632 221 122334443
Q ss_pred CCCCccc---c--ccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCC-CCCCEEEEEeCCCCCC
Q 020528 231 AGFIPGV---L--DVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE-NAGKLIVVVFPSFGER 304 (325)
Q Consensus 231 ~~~~~~~---~--~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~-~~~~~vv~i~t~~g~~ 304 (325)
.+..... + .++..+..+.|+|+|+++++++|++++|+++||+||+++++++++.+++. .++++||+++||+|.|
T Consensus 303 ~~~~~~~~~~~~~~~~~~g~~v~V~d~e~~~a~~~la~~eGi~vepssaaala~~~~l~~~~~~~~~~~Vv~v~tG~g~k 382 (394)
T PRK08197 303 VPKALGDFLVLDAVRETGGCAIAVSDDAILAAQRELAREEGLFACPEGAATFAAARQLRESGWLKGDERVVLFNTGSGLK 382 (394)
T ss_pred CCCCCCHHHHHHHHHHhCCEEEEeCHHHHHHHHHHHHhcCCceECchHHHHHHHHHHHHHcCCcCCCCcEEEEeCCCCcC
Confidence 3321111 1 12456789999999999999999999999999999999999999988764 4678999999999999
Q ss_pred Ccch
Q 020528 305 YLSS 308 (325)
Q Consensus 305 ~~~~ 308 (325)
|+++
T Consensus 383 ~~~~ 386 (394)
T PRK08197 383 YPDT 386 (394)
T ss_pred chhh
Confidence 9886
No 24
>PRK07048 serine/threonine dehydratase; Validated
Probab=100.00 E-value=4.2e-59 Score=430.00 Aligned_cols=292 Identities=20% Similarity=0.264 Sum_probs=251.0
Q ss_pred ccchhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHH
Q 020528 5 KSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIG 84 (325)
Q Consensus 5 ~~~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a 84 (325)
....++++...+++|||+++++++...|.+||+|+|++|||||||||++.+++.++.+.+. ..+||++|+||||+|
T Consensus 11 i~~a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~a 86 (321)
T PRK07048 11 VAAAAARLAGVAHRTPVLTSRTADARTGAQVFFKCENFQRMGAFKFRGAYNALSQFSPEQR----RAGVVTFSSGNHAQA 86 (321)
T ss_pred HHHHHHHhhCCCCCCCCccchhhHHhcCCeEEEEeccCCCCCCeeHHHHHHHHHhhhHhhc----CCcEEEeCCCHHHHH
Confidence 3567889999999999999999987777899999999999999999999999998875432 256999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhch
Q 020528 85 LAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETT 164 (325)
Q Consensus 85 lA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~ 164 (325)
+|++|+.+|++|+|+||++++..|+++++.+||+|+.++. +++++.+.+++++++. +++|++||+|+.+ ++||+++
T Consensus 87 lA~~a~~~G~~~~vvvp~~~~~~k~~~~~~~GAeV~~~~~--~~~~~~~~a~~l~~~~-g~~~~~~~~~~~~-~~g~~t~ 162 (321)
T PRK07048 87 IALSARLLGIPATIVMPQDAPAAKVAATRGYGGEVVTYDR--YTEDREEIGRRLAEER-GLTLIPPYDHPHV-IAGQGTA 162 (321)
T ss_pred HHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEECCCCCcch-hhccchH
Confidence 9999999999999999999999999999999999999995 4678888888888886 7899999999987 7899999
Q ss_pred HHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccc----cCCCC-----CCcccccCCCCC--
Q 020528 165 GPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVL----SGGKP-----GPHKIQGIGAGF-- 233 (325)
Q Consensus 165 ~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~----~~~~~-----~~~~~~gl~~~~-- 233 (325)
++||++|+ +.||+||+|+|+||+++|+++++|+.+|++|||+|||++++++ ..++. ..+.++++....
T Consensus 163 ~~EI~~q~-~~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~g~~~~~~~ 241 (321)
T PRK07048 163 AKELFEEV-GPLDALFVCLGGGGLLSGCALAARALSPGCKVYGVEPEAGNDGQQSFRSGEIVHIDTPRTIADGAQTQHLG 241 (321)
T ss_pred HHHHHhhc-CCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEeeCCChhHHHHHHcCCcccCCCCCCcccccccCCcc
Confidence 99999999 4899999999999999999999999999999999999999754 23332 122334443221
Q ss_pred -CccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcch
Q 020528 234 -IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSS 308 (325)
Q Consensus 234 -~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~ 308 (325)
..++...+++|+++.|+|+|+++++++|++++|+++||++|+++++++++.+. .++++||+|+|+ |+.+++.
T Consensus 242 ~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~eps~a~~laa~~~~~~~--~~~~~vv~i~tG-Gn~~~~~ 314 (321)
T PRK07048 242 NYTFPIIRRLVDDIVTVSDAELVDAMRFFAERMKIVVEPTGCLGAAAALRGKVP--LKGKRVGVIISG-GNVDLAR 314 (321)
T ss_pred HHHHHHHHHhCCceEEECHHHHHHHHHHHHHhCCceeccHHHHHHHHHHhCchh--cCCCeEEEEeCC-CCCCHHH
Confidence 12233457889999999999999999999999999999999999999987554 367899999974 7876664
No 25
>PRK06382 threonine dehydratase; Provisional
Probab=100.00 E-value=3.9e-59 Score=442.01 Aligned_cols=290 Identities=23% Similarity=0.296 Sum_probs=252.6
Q ss_pred cchhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHH
Q 020528 6 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGL 85 (325)
Q Consensus 6 ~~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~al 85 (325)
....+++...+++|||++++.|+...|++||+|+|++|||||||||++.+++..+.+.+. .++||++|+||||+|+
T Consensus 13 ~~a~~~~~~~i~~TPl~~~~~ls~~~g~~v~~K~E~~nptGSfK~Rga~~~i~~~~~~~~----~~gvv~aSsGN~g~a~ 88 (406)
T PRK06382 13 LYAKSYLEGYLNRTPLIHSTTFGDEYGGDIYFKLENFQKTGSFKSRGAVFKFSKLSEDEL----RNGVITASAGNHAQGV 88 (406)
T ss_pred HHHHHHHhCcCCCCCeeEhhhhHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHhcchhcc----CCeEEEECCCHHHHHH
Confidence 456788999999999999999998888899999999999999999999999988876553 2469999999999999
Q ss_pred HHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchH
Q 020528 86 AFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTG 165 (325)
Q Consensus 86 A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~ 165 (325)
|++|+.+|++|+||||++++..|+++++.+||+|+.++. +++++.+.+++++++. +++|++||+|+.+ ++||+|++
T Consensus 89 A~aa~~~G~~~~ivmp~~~~~~k~~~~~~~GA~Vv~~~~--~~~~a~~~a~~la~~~-~~~~v~~~~~~~~-i~g~~t~~ 164 (406)
T PRK06382 89 AYAASINGIDAKIVMPEYTIPQKVNAVEAYGAHVILTGR--DYDEAHRYADKIAMDE-NRTFIEAFNDRWV-ISGQGTIG 164 (406)
T ss_pred HHHHHHcCCCEEEEEcCCCHHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCccCChHH-HHHHHHHH
Confidence 999999999999999999999999999999999999985 5899999999998886 7899999999987 78999999
Q ss_pred HHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----CCcccccCCCCC---
Q 020528 166 PEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKP-----GPHKIQGIGAGF--- 233 (325)
Q Consensus 166 ~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~----~~~~-----~~~~~~gl~~~~--- 233 (325)
+||++|+ +.||+||+|+|+||+++|+++++|...|++|||||||++++++. .+++ ..+.++|++.+.
T Consensus 165 ~Ei~eq~-~~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vigVe~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~ 243 (406)
T PRK06382 165 LEIMEDL-PDLDQIIVPVGGGGLISGIALAAKHINPNVKIIGIESELSDSMKASLREGKIVAHTSGVSICDGISVKYPGD 243 (406)
T ss_pred HHHHHhc-CCCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcCCceecCCCCCccccccCCCccH
Confidence 9999999 57999999999999999999999999999999999999998762 3332 245567877654
Q ss_pred CccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcc
Q 020528 234 IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLS 307 (325)
Q Consensus 234 ~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~ 307 (325)
.+..+.++++|+++.|+|+|+.++++++++++|+++||++|+++++++.... ..++++||+|+| ||+.+++
T Consensus 244 ~~~~~~~~~~d~~v~V~d~ei~~a~~~l~~~~gi~~epsga~~laal~~~~~--~~~~~~Vv~i~s-GGn~d~~ 314 (406)
T PRK06382 244 LTFDIAKNYVDDIVTVTEESVSKAIYKLFEREKIVAEPSGAVGLAAIMEGKV--DVKGKKVAIVVS-GGNINPL 314 (406)
T ss_pred HHHHHHHHcCCEEEEECHHHHHHHHHHHHHHcCceechHHHHHHHHHHhccc--cCCCCEEEEEeC-CCCCCHH
Confidence 2334456789999999999999999999999999999999999997764321 135778999996 5775444
No 26
>PLN02550 threonine dehydratase
Probab=100.00 E-value=9.4e-59 Score=448.38 Aligned_cols=293 Identities=22% Similarity=0.292 Sum_probs=254.9
Q ss_pred HHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHHH
Q 020528 11 DVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAA 90 (325)
Q Consensus 11 ~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~ 90 (325)
++...+++|||+++++|+..+|++||+|+|++|||||||+|++.+.+.++.+... . ++||++|+||||+++|++|+
T Consensus 102 ~v~~~i~~TPL~~s~~LS~~~g~~IylK~E~lqptGSFK~RGA~n~I~~L~~e~~-~---~GVV~aSaGNhAqgvA~aA~ 177 (591)
T PLN02550 102 KVYDVAIESPLQLAKKLSERLGVKVLLKREDLQPVFSFKLRGAYNMMAKLPKEQL-D---KGVICSSAGNHAQGVALSAQ 177 (591)
T ss_pred hhhccccCChhhhhHHhhHhhCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHhcC-C---CCEEEECCCHHHHHHHHHHH
Confidence 4558889999999999998888999999999999999999999999998854432 2 56999999999999999999
Q ss_pred HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHHHHh
Q 020528 91 AKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWK 170 (325)
Q Consensus 91 ~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~ 170 (325)
++|++|+||||++++..|++.++.+||+|+.++. +++++.+.+++++++. +++|++||+|+.+ ++||+|+|+||++
T Consensus 178 ~lGika~IvmP~~tp~~Kv~~~r~~GAeVvl~g~--~~dea~~~A~~la~e~-g~~fi~pfddp~v-iaGqgTig~EI~e 253 (591)
T PLN02550 178 RLGCDAVIAMPVTTPEIKWQSVERLGATVVLVGD--SYDEAQAYAKQRALEE-GRTFIPPFDHPDV-IAGQGTVGMEIVR 253 (591)
T ss_pred HcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEEECCCCChHH-HHHHHHHHHHHHH
Confidence 9999999999999999999999999999999984 6899999999998886 7789999999987 7999999999999
Q ss_pred hhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCCC-----CcccccCCCCCC---cccc
Q 020528 171 GTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKPG-----PHKIQGIGAGFI---PGVL 238 (325)
Q Consensus 171 ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~----~~~~~-----~~~~~gl~~~~~---~~~~ 238 (325)
|+.+.+|+||+|+|+||+++|++.++|..+|++|||||||++++++. .|++. .+.++|++...+ +..+
T Consensus 254 Ql~~~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVIGVEp~~a~~~~~s~~~G~~v~~~~~~tiAdGiav~~~G~~t~~i 333 (591)
T PLN02550 254 QHQGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGVEPSDANAMALSLHHGERVMLDQVGGFADGVAVKEVGEETFRL 333 (591)
T ss_pred HcCCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCccccCCCCCccceeecCCCCHHHHHH
Confidence 99656999999999999999999999999999999999999998874 34331 245567765432 3334
Q ss_pred ccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhHHH
Q 020528 239 DVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFESV 314 (325)
Q Consensus 239 ~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~~~ 314 (325)
.++++|+++.|+|+|+.++++++++++|+++||++|+++||++++.+....++++||+|+|| |+.++++ +..+
T Consensus 334 ~~~~vD~vV~Vsd~eI~~Ai~~l~e~~givvEpAGA~alAall~~~~~~~~~g~~Vv~vlsG-gNid~~~--l~~v 406 (591)
T PLN02550 334 CRELVDGVVLVSRDAICASIKDMFEEKRSILEPAGALALAGAEAYCKYYGLKDENVVAITSG-ANMNFDR--LRIV 406 (591)
T ss_pred HHhhCCEEEEECHHHHHHHHHHHHHHCCCEEeHHHHHHHHHHHHHHHhcCCCCCeEEEEecC-CCCCHHH--HHHH
Confidence 56889999999999999999999999999999999999999999876544578899999955 6655553 4444
No 27
>PRK06110 hypothetical protein; Provisional
Probab=100.00 E-value=5.4e-59 Score=429.02 Aligned_cols=298 Identities=21% Similarity=0.252 Sum_probs=255.9
Q ss_pred cchhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHH
Q 020528 6 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGL 85 (325)
Q Consensus 6 ~~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~al 85 (325)
..+++++...+++|||+++++|++.+|.+||+|+|++|||||||||++.+++..+.+++... ..||++|+||||+|+
T Consensus 9 ~~a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~l~~a~~~~~~~---~~vv~aSsGN~g~al 85 (322)
T PRK06110 9 EAAAAVVYAAMPPTPQYRWPLLAERLGCEVWVKHENHTPTGAFKVRGGLVYFDRLARRGPRV---RGVISATRGNHGQSV 85 (322)
T ss_pred HHHHHHHhCcCcCCCcccchhHHHHhCCeEEEEeccCCCcCCcHHHHHHHHHHHhhhhcCCC---ceEEEECCCHHHHHH
Confidence 45678889999999999999999777889999999999999999999999999998876533 469999999999999
Q ss_pred HHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchH
Q 020528 86 AFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTG 165 (325)
Q Consensus 86 A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~ 165 (325)
|++|+++|++|+||||++.+..|+++++.+||+|+.+++ +++++.+.+.+++++. ++||+++| |+.+ +.||++++
T Consensus 86 A~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~-~~~~-~~G~~t~~ 160 (322)
T PRK06110 86 AFAARRHGLAATIVVPHGNSVEKNAAMRALGAELIEHGE--DFQAAREEAARLAAER-GLHMVPSF-HPDL-VRGVATYA 160 (322)
T ss_pred HHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEcCCC-CChH-HhccchHH
Confidence 999999999999999999999999999999999999974 6889999999988886 78999998 5655 68999999
Q ss_pred HHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCCC-----CcccccCCCCCC-c
Q 020528 166 PEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKPG-----PHKIQGIGAGFI-P 235 (325)
Q Consensus 166 ~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~----~~~~~-----~~~~~gl~~~~~-~ 235 (325)
+||++|++ .+|+||+|+|+||+++|++.++|+.+|++|||+|||++++++. .+++. .+..++++.... |
T Consensus 161 ~Ei~~q~~-~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi~Vep~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~ 239 (322)
T PRK06110 161 LELFRAVP-DLDVVYVPIGMGSGICGAIAARDALGLKTRIVGVVSAHAPAYALSFEAGRVVTTPVATTLADGMACRTPDP 239 (322)
T ss_pred HHHHhhCC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEeeCCChHHHHHHHcCCcccCCCCCCcccccCCCCccH
Confidence 99999994 7999999999999999999999999999999999999998763 33322 234455543321 2
Q ss_pred ccc--ccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhHH
Q 020528 236 GVL--DVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFES 313 (325)
Q Consensus 236 ~~~--~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~~ 313 (325)
..+ .++++|+++.|+|+|++++++++++++|+++||++|+++++++++.+. .++++||+|+|+ |+.+++. |.+
T Consensus 240 ~~~~~~~~~~d~~~~Vsd~e~~~a~~~l~~~~gi~~e~ssaa~laa~~~~~~~--~~~~~Vv~i~tG-gn~d~~~--~~~ 314 (322)
T PRK06110 240 EALEVIRAGADRIVRVTDDEVAAAMRAYFTDTHNVAEGAGAAALAAALQERER--LAGKRVGLVLSG-GNIDRAV--FAR 314 (322)
T ss_pred HHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEEehHHHHHHHHHHhChhh--hCCCcEEEEECC-CCCCHHH--HHH
Confidence 222 347899999999999999999999999999999999999999986543 367899999976 7877664 666
Q ss_pred HHHH
Q 020528 314 VKKE 317 (325)
Q Consensus 314 ~~~~ 317 (325)
+...
T Consensus 315 ~~~~ 318 (322)
T PRK06110 315 VLAG 318 (322)
T ss_pred HHhh
Confidence 6554
No 28
>PRK07476 eutB threonine dehydratase; Provisional
Probab=100.00 E-value=8.7e-59 Score=427.65 Aligned_cols=299 Identities=21% Similarity=0.271 Sum_probs=254.0
Q ss_pred ccchhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHH
Q 020528 5 KSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIG 84 (325)
Q Consensus 5 ~~~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a 84 (325)
....+++|...+++|||+++++|+...|.+||+|+|++|||||||||++.+++.++.++|. .++||++|+||||+|
T Consensus 6 i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~a~~~~~----~~gvv~aSsGN~g~a 81 (322)
T PRK07476 6 IYRARRRIAGRVRRTPLVASASLSARAGVPVWLKLETLQPTGSFKLRGATNALLSLSAQER----ARGVVTASTGNHGRA 81 (322)
T ss_pred HHHHHHHHhCCCCCCCceechhhHHhhCCeEEEEEccCCCCCCchHHHHHHHHHhhhhhhh----CCeEEEECCChHHHH
Confidence 3567889999999999999999988778899999999999999999999999999998886 245999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhch
Q 020528 85 LAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETT 164 (325)
Q Consensus 85 lA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~ 164 (325)
+|++|+++|++|+||||+++++.|+++++.+||+|+.++. +++++.+.+.+++++. +++|++||+|+.+ ++|++++
T Consensus 82 lA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~-~~g~~t~ 157 (322)
T PRK07476 82 LAYAARALGIRATICMSRLVPANKVDAIRALGAEVRIVGR--SQDDAQAEVERLVREE-GLTMVPPFDDPRI-IAGQGTI 157 (322)
T ss_pred HHHHHHHhCCCEEEEeCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcce-eechhHH
Confidence 9999999999999999999999999999999999999985 5788888999988876 7899999999988 6899999
Q ss_pred HHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----CCcccccCCCC---
Q 020528 165 GPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKP-----GPHKIQGIGAG--- 232 (325)
Q Consensus 165 ~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~----~~~~-----~~~~~~gl~~~--- 232 (325)
++||++|+ +++|+||+|+|+||+++|++++||..+|++|||+|||++++++. .+.+ ..+..+++..+
T Consensus 158 ~~Ei~~Q~-~~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigVe~~~~~~~~~s~~~g~~~~~~~~~t~a~~l~~~~~~ 236 (322)
T PRK07476 158 GLEILEAL-PDVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVSMERGAAMHASLAAGRPVQVEEVPTLADSLGGGIGL 236 (322)
T ss_pred HHHHHHhC-cCCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEEEECCchHHHHHHHcCCceeCCCCCCccccccccccC
Confidence 99999999 47999999999999999999999999999999999999887653 2322 12334444222
Q ss_pred --CCccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhh
Q 020528 233 --FIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVL 310 (325)
Q Consensus 233 --~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~ 310 (325)
..+..+.++.+|+.+.|+|+|++++++++++++|+++||+++++++++++... ...+++||+++|+++ -+.+ .
T Consensus 237 ~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~ve~a~a~~laal~~~~~--~~~~~~Vvvi~tGg~-~~~~--~ 311 (322)
T PRK07476 237 DNRYTFAMCRALLDDVVLLDEAEIAAGIRHAYREERLVVEGAGAVGIAALLAGKI--AARDGPIVVVVSGAN-IDME--L 311 (322)
T ss_pred CcHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHhcCceEeChhHHHHHHHHhCCc--ccCCCcEEEEECCCC-CCHH--H
Confidence 12334455788999999999999999999999999999999999999984211 123479999997654 3433 4
Q ss_pred hHHHHHH
Q 020528 311 FESVKKE 317 (325)
Q Consensus 311 ~~~~~~~ 317 (325)
+..++..
T Consensus 312 ~~~~~~~ 318 (322)
T PRK07476 312 HRRIING 318 (322)
T ss_pred HHHHHhh
Confidence 6666544
No 29
>PRK08198 threonine dehydratase; Provisional
Probab=100.00 E-value=1.3e-58 Score=439.33 Aligned_cols=291 Identities=25% Similarity=0.363 Sum_probs=254.9
Q ss_pred cchhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHH
Q 020528 6 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGL 85 (325)
Q Consensus 6 ~~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~al 85 (325)
..+++++...+++|||+++++|++..|++||+|+|++|||||||||++.+++.++.+++. .++||++|+||||+++
T Consensus 10 ~~a~~~i~~~i~~TPl~~~~~ls~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~al 85 (404)
T PRK08198 10 EEARERLKGVVRRTPLEYSRTLSELTGAEVYLKCENLQRTGSFKIRGAYNKIASLSEEER----ARGVVAASAGNHAQGV 85 (404)
T ss_pred HHHHHHHhccCCCCCceehhhHHHHhCCEEEEEECCCCCCCCCHHHHHHHHHHhccHhhc----CCEEEEECCCHHHHHH
Confidence 456788999999999999999998788899999999999999999999999998875543 2679999999999999
Q ss_pred HHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchH
Q 020528 86 AFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTG 165 (325)
Q Consensus 86 A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~ 165 (325)
|++|+.+|++|+||||++++..|+++++.+||+|+.++. +++++.+.+++++++. +++|++||+|+.+ ++||+|+|
T Consensus 86 A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~~~~~-~~g~~t~a 161 (404)
T PRK08198 86 AYAASLLGIKATIVMPETAPLSKVKATRSYGAEVVLHGD--VYDEALAKAQELAEET-GATFVHPFDDPDV-IAGQGTIG 161 (404)
T ss_pred HHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCCCCCccH-HHHHHHHH
Confidence 999999999999999999999999999999999999984 6899999999998886 7899999999987 78999999
Q ss_pred HHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCCC-----CcccccCCCCC---
Q 020528 166 PEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKPG-----PHKIQGIGAGF--- 233 (325)
Q Consensus 166 ~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~----~~~~~-----~~~~~gl~~~~--- 233 (325)
+||++|+ +++|+||+|+|+||+++|++.+||+.+|++|||||||++++++. .+++. .+.+++++...
T Consensus 162 ~EI~~q~-~~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~g~~v~~~~~ 240 (404)
T PRK08198 162 LEILEDL-PDVDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQAEGAPAMPESLAAGRPVELESVDTIADGIAVKRPGD 240 (404)
T ss_pred HHHHHhC-CCCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEEEEeCCChHHHHHHHcCCCEecCCCCccccccccCCcCH
Confidence 9999999 57999999999999999999999999999999999999998773 23331 23445665432
Q ss_pred CccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcch
Q 020528 234 IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSS 308 (325)
Q Consensus 234 ~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~ 308 (325)
.+..+.++++|+++.|+|+|+.++++++++++|+++||++|+++|+++++... .++++||+++|+ |+.+++.
T Consensus 241 ~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~g~~~e~sga~~lAal~~~~~~--~~~~~vv~vl~g-gn~~~~~ 312 (404)
T PRK08198 241 LTFEIIRELVDDVVTVSDEEIARAILLLLERAKLVVEGAGAVSVAALLSGKLD--VKGKKVVAVLSG-GNIDVLL 312 (404)
T ss_pred HHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCeEEehHHHHHHHHHHhchhh--cCCCeEEEEECC-CCCCHHH
Confidence 23344567899999999999999999999999999999999999999986532 467899999975 7766554
No 30
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=100.00 E-value=1.1e-58 Score=438.39 Aligned_cols=299 Identities=22% Similarity=0.299 Sum_probs=255.9
Q ss_pred cchhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHH
Q 020528 6 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGL 85 (325)
Q Consensus 6 ~~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~al 85 (325)
..+.+++...+++|||+++++|++.+|.+||+|+|++|||||||+|++.+++..+.+... .++||++|+||||+++
T Consensus 4 ~~a~~~i~~~i~~TPl~~~~~ls~~~g~~iy~K~E~~~ptGSfK~RgA~~~i~~l~~~~~----~~gvv~aSsGN~g~a~ 79 (409)
T TIGR02079 4 EAARKRLKEVVPHTPLQLNERLSEKYGANIYLKREDLQPVRSYKIRGAYNFLKQLSDAQL----AKGVVCASAGNHAQGF 79 (409)
T ss_pred HHHHHHHhCcCCCCCccccHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhh----CCEEEEECccHHHHHH
Confidence 457788999999999999999998788899999999999999999999999987543222 2569999999999999
Q ss_pred HHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE---EEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHh
Q 020528 86 AFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL---VLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYE 162 (325)
Q Consensus 86 A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v---~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~ 162 (325)
|++|+++|++|+||||++++..|+.+++.+||++ +.++ .+++++.+.+++++++. +++|++||+|+.+ ++||+
T Consensus 80 A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~vv~v~~~g--~~~~~a~~~a~~~~~~~-g~~~~~~~~~~~~-~~g~~ 155 (409)
T TIGR02079 80 AYACRHLGVHGTVFMPATTPKQKIDRVKIFGGEFIEIILVG--DTFDQCAAAAREHVEDH-GGTFIPPFDDPRI-IEGQG 155 (409)
T ss_pred HHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCCeeEEEEeC--CCHHHHHHHHHHHHHhc-CCEEeCCCCCHhH-hhhhH
Confidence 9999999999999999999999999999999974 4444 46899999999998886 7899999999987 78999
Q ss_pred chHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----CCcccccCCCCC
Q 020528 163 TTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKP-----GPHKIQGIGAGF 233 (325)
Q Consensus 163 t~~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~----~~~~-----~~~~~~gl~~~~ 233 (325)
|+++||++|++..||+||+|+|+||+++|++.++|+.+|++|||||||++++++. .+++ ..+.++|++...
T Consensus 156 ti~~Ei~~q~~~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~g~~v~~ 235 (409)
T TIGR02079 156 TVAAEILDQLPEKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVEPEGAPSMKASLEAGEVVTLDKIDNFVDGAAVKR 235 (409)
T ss_pred HHHHHHHHhcCCCCCEEEEEecHhHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCceecCCCCCeeccccCCC
Confidence 9999999999656999999999999999999999999999999999999998774 2432 234567776655
Q ss_pred Cc---cccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhh
Q 020528 234 IP---GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVL 310 (325)
Q Consensus 234 ~~---~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~ 310 (325)
++ +.+.+.++|+++.|+|+|+.++++++++++|+++||+||+++|+++++.++ .++++||+|+| ||+.+++.
T Consensus 236 ~g~~~~~~~~~~vd~vv~V~d~e~~~a~~~l~~~~gi~ve~agaa~lAa~~~~~~~--~~~~~Vv~ils-Ggn~d~~~-- 310 (409)
T TIGR02079 236 VGDLNFKALKDVPDEVTLVPEGAVCTTILDLYNLEGIVAEPAGALSIAALERLGEE--IKGKTVVCVVS-GGNNDIER-- 310 (409)
T ss_pred CcHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHhcCceecchHHHHHHHHHhhhhh--cCCCeEEEEEC-CCCCCHHH--
Confidence 33 223467899999999999999999999999999999999999999987543 46889999996 57766654
Q ss_pred hHHHHHH
Q 020528 311 FESVKKE 317 (325)
Q Consensus 311 ~~~~~~~ 317 (325)
+..+...
T Consensus 311 ~~~~~~~ 317 (409)
T TIGR02079 311 TEEIRER 317 (409)
T ss_pred HHHHHHH
Confidence 5555443
No 31
>PRK06721 threonine synthase; Reviewed
Probab=100.00 E-value=2.5e-58 Score=428.83 Aligned_cols=296 Identities=24% Similarity=0.294 Sum_probs=250.8
Q ss_pred hhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHH
Q 020528 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAF 87 (325)
Q Consensus 8 ~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~ 87 (325)
...++++.+|+|||+++++|++..|.+||+|+|++|||||||||++.+++.++.++|. .+||++|+||||+|+|+
T Consensus 18 ~~~~~~l~~G~TPl~~l~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~a~~~g~-----~~vV~aSsGN~G~alA~ 92 (352)
T PRK06721 18 NTPDVSLMEGNTPLIPLLNISKQLGIQLYGKYEGANPTGSFKDRGMVMAVAKAKEEGS-----EAIICASTGNTSASAAA 92 (352)
T ss_pred CCCccccCcCCCCeeEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHH
Confidence 3445788899999999999987777899999999999999999999999999999886 68999999999999999
Q ss_pred HHHHcCCeEEEEecCCC-CHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHH
Q 020528 88 MAAAKGYRLIITMPASM-SLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGP 166 (325)
Q Consensus 88 ~a~~~g~~~~i~~p~~~-~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~ 166 (325)
+|+.+|++|+||||++. +..|+++++.+||+|+.+++ +++++.+.+++++++. ++++++ +.|+.+ ..||.++++
T Consensus 93 ~aa~~G~~~~vvvp~~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~-~~n~~~-~~G~~t~~~ 167 (352)
T PRK06721 93 YAARLGMKCIIVIPEGKIAHGKLAQAVAYGAEIISIEG--NFDDALKAVRNIAAEE-PITLVN-SVNPYR-IEGQKTAAF 167 (352)
T ss_pred HHHHCCCcEEEEECCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhC-Cceecc-CCCchh-hhhhhhHHH
Confidence 99999999999999974 88999999999999999985 5888999999998886 567665 457776 689999999
Q ss_pred HHHhhhCCCCCEEEEecCCchhHHHHH----HHHHhhC-CCcEEEEEecCCCccccCCCC---CCcccccCCCCCCcccc
Q 020528 167 EIWKGTGGKIDALVSGIGTGGTVTGAG----KYLKEHN-PEIKLYGVEPVESAVLSGGKP---GPHKIQGIGAGFIPGVL 238 (325)
Q Consensus 167 Ei~~ql~~~~D~iv~pvG~Gg~~aGi~----~~~k~~~-~~~~vigV~~~~~~~~~~~~~---~~~~~~gl~~~~~~~~~ 238 (325)
||++|+++.||+||+|+|+||+++|++ +.+|..+ |.+|||+|||++++++..+.. ..+..++++.+. |..+
T Consensus 168 Ei~eq~~~~~D~ivv~vG~GG~l~G~~~G~~~~lk~~~~~~~~vigVep~~~~~~~~g~~~~~~~tia~~l~~~~-~~~~ 246 (352)
T PRK06721 168 EICDQLQRAPDVLAIPVGNAGNITAYWKGFCEYEKEKGYKKPRIHGFEAEGAAAIVKGHVIDEPETIATAIRIGN-PASW 246 (352)
T ss_pred HHHHHhCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCeEEEEecCCCChHhhCCcCCCCCceeeccccCC-CCCH
Confidence 999999767999999999999999854 4555554 899999999999987765543 123345565443 2211
Q ss_pred ------ccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCC-CCCCEEEEEeCCCCCCCcchhhh
Q 020528 239 ------DVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE-NAGKLIVVVFPSFGERYLSSVLF 311 (325)
Q Consensus 239 ------~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~-~~~~~vv~i~t~~g~~~~~~~~~ 311 (325)
...++|+++.|+|+|++++++++++++|+++||++|+++++++++++.+. .++++||+++||+|.||++.+.-
T Consensus 247 ~~~~~~~~~~~~~~~~V~d~e~~~a~~~la~~eGi~vepssgaalaa~~~~~~~~~~~~~~~Vv~v~~g~g~k~~~~~~~ 326 (352)
T PRK06721 247 SYAVEAAEQSHGEIDMVSDEEILHAYRLLAKSEGVFAEPGSNASLAGVMKHVQSGKIKKGETVVAVLTGNGLKDPDIAIS 326 (352)
T ss_pred HHHHHHHHhcCCEEEEECHHHHHHHHHHHHHhcCcccCchHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCcCchHHHhh
Confidence 23468999999999999999999999999999999999999999887643 46789999999999999987443
Q ss_pred HHH
Q 020528 312 ESV 314 (325)
Q Consensus 312 ~~~ 314 (325)
+.|
T Consensus 327 ~~~ 329 (352)
T PRK06721 327 SNT 329 (352)
T ss_pred hcc
Confidence 333
No 32
>PRK07591 threonine synthase; Validated
Probab=100.00 E-value=1.5e-58 Score=439.01 Aligned_cols=290 Identities=21% Similarity=0.263 Sum_probs=252.8
Q ss_pred HHhhhhCCCCceecccccCCCC-ceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHH
Q 020528 11 DVTELIGKTPLVYLNRIVDGCV-ARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMA 89 (325)
Q Consensus 11 ~i~~~~~~TPL~~~~~l~~~~~-~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a 89 (325)
.+++++|+|||+++++|++.+| .+||+|+|++|||||||||++.+++..|.+.|. ++|+++|+||||+|+|++|
T Consensus 82 ~v~l~eG~TPLv~~~~l~~~lG~~~l~~K~E~~nPtGSfKdRga~~~v~~A~~~g~-----~~vv~aSsGN~g~alA~~a 156 (421)
T PRK07591 82 PVDLGPGFTPLVKADRLARELGLKNLYIKDDSVNPTHSFKDRVVSVALTAARELGF-----TTVACASTGNLANSVAAHA 156 (421)
T ss_pred CCcCCCCCCcceEhHHHHHHhCCCcEEEEeCCCCCccChHHHHHHHHHHHHHHcCC-----CEEEEeCCCHHHHHHHHHH
Confidence 4788999999999999987777 589999999999999999999999999999986 6799999999999999999
Q ss_pred HHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHHHH
Q 020528 90 AAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIW 169 (325)
Q Consensus 90 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~ 169 (325)
+++|++|+||||++++..|+.+++.+||+|+.+++ +++++.+.+++++++.+++++++++.||.. ++|++|+++||+
T Consensus 157 a~~Gl~~~I~vP~~~~~~k~~~~~~~GA~Vi~v~g--~~d~a~~~a~~~~~~~~~~~~~n~~~~p~~-ieG~~Tia~Ei~ 233 (421)
T PRK07591 157 ARAGLDSCVFIPADLEAGKIVGTLVYGPTLVAVDG--NYDDVNRLCSELANEHEGWGFVNINLRPYY-AEGSKTLGYEVA 233 (421)
T ss_pred HHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhcCCEEEecCCCCccc-ccchHHHHHHHH
Confidence 99999999999999999999999999999999996 588999999998887657889998778886 789999999999
Q ss_pred hhhCCC-CCEEEEecCCchhHHHHHHHHHhh-------CCCcEEEEEecCCCcccc----CCCC------CCcccccCCC
Q 020528 170 KGTGGK-IDALVSGIGTGGTVTGAGKYLKEH-------NPEIKLYGVEPVESAVLS----GGKP------GPHKIQGIGA 231 (325)
Q Consensus 170 ~ql~~~-~D~iv~pvG~Gg~~aGi~~~~k~~-------~~~~~vigV~~~~~~~~~----~~~~------~~~~~~gl~~ 231 (325)
+|+++. ||+||+|+|+||+++|++++|+++ .+.+|||+|||++++++. .+.. ..+..+++..
T Consensus 234 eQl~~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~Vq~~g~~~~~~~~~~g~~~~~~~~~~tia~~l~~ 313 (421)
T PRK07591 234 EQLGWRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGAQAEGCSPIAQAFKEGRDVVKPVKPNTIAKSLAI 313 (421)
T ss_pred HHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEEEecCCCCHHHHHHHcCCCcccCCCCCchhhheec
Confidence 999755 999999999999999999999998 578999999999987664 2221 1233445543
Q ss_pred CCCcc-----ccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCC-CCCCEEEEEeCCCCCCC
Q 020528 232 GFIPG-----VLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE-NAGKLIVVVFPSFGERY 305 (325)
Q Consensus 232 ~~~~~-----~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~-~~~~~vv~i~t~~g~~~ 305 (325)
+.... ...++..+.++.|+|+|++++++.|++++|+++||++|+++|+++++.+++. .++++||+++||+|+||
T Consensus 314 ~~p~~~~~~~~~i~~~~g~~v~Vsd~ei~~a~~~la~~eGi~~epssaaalAal~~l~~~g~i~~~~~VV~i~tG~G~kd 393 (421)
T PRK07591 314 GNPADGPYALDIARRTGGAIEDVTDEEIIEGIKLLARTEGIFTETAGGVTVAVLKKLVEAGKIDPDEETVVYITGNGLKT 393 (421)
T ss_pred CCCCCcHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhcCCeeecchHHHHHHHHHHHHHhCCCCCCCeEEEEeCCCccCC
Confidence 33111 1223556789999999999999999999999999999999999999988765 47889999999999999
Q ss_pred cch
Q 020528 306 LSS 308 (325)
Q Consensus 306 ~~~ 308 (325)
++.
T Consensus 394 ~~~ 396 (421)
T PRK07591 394 LEA 396 (421)
T ss_pred HHH
Confidence 875
No 33
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=100.00 E-value=2.7e-58 Score=443.44 Aligned_cols=296 Identities=24% Similarity=0.325 Sum_probs=257.3
Q ss_pred hHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHH
Q 020528 9 AKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFM 88 (325)
Q Consensus 9 ~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~ 88 (325)
..++.+.+++|||+++++|++.+|++||+|+|++|||||||+|+|.+.+..+.+... .++||++|+||||+++|++
T Consensus 8 ~~~v~~~i~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~----~~gVV~aSaGNha~~vA~a 83 (499)
T TIGR01124 8 TARVYEAAQETPLQKAAKLSERLGNRILIKREDLQPVFSFKLRGAYNKMAQLSPEQK----ARGVIAASAGNHAQGVAFS 83 (499)
T ss_pred HhHhhCccCCCCeeehHHHHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHHhhHHhc----CCEEEEECCCHHHHHHHHH
Confidence 357788999999999999998888899999999999999999999999988743322 2579999999999999999
Q ss_pred HHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHHH
Q 020528 89 AAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEI 168 (325)
Q Consensus 89 a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei 168 (325)
|+++|++|+||||.+++..|+++++.+||+|+.++. +++++.+.+++++++. +++|++||+||.+ ++||+|+|+||
T Consensus 84 a~~~Gi~~~IvmP~~tp~~Kv~~~r~~GA~Vvl~g~--~~d~a~~~a~~la~~~-g~~~i~p~~~~~~-i~G~gtig~EI 159 (499)
T TIGR01124 84 AARLGLKALIVMPETTPDIKVDAVRGFGGEVVLHGA--NFDDAKAKAIELSQEK-GLTFIHPFDDPLV-IAGQGTLALEI 159 (499)
T ss_pred HHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEeCc--CHHHHHHHHHHHHHhc-CCEeeCCCCChHH-HHhhHHHHHHH
Confidence 999999999999999999999999999999999984 6899999999998886 7899999999987 79999999999
Q ss_pred HhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----CCcccccCCCCCC---cc
Q 020528 169 WKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKP-----GPHKIQGIGAGFI---PG 236 (325)
Q Consensus 169 ~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~----~~~~-----~~~~~~gl~~~~~---~~ 236 (325)
++|++.++|+||+|+|+||+++|++.++|..+|++|||||||++++++. .+++ ..+.++|++...+ ++
T Consensus 160 ~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVIgVep~~~~~~~~s~~~g~~~~~~~~~t~adgiav~~~g~~~~ 239 (499)
T TIGR01124 160 LRQVANPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGVEPTDSDCMKQALDAGEPVDLDQVGLFADGVAVKRVGDETF 239 (499)
T ss_pred HHhCCCCCCEEEEccCccHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCceeCCCCCCccCcccCCCccHHHH
Confidence 9999668999999999999999999999999999999999999998774 2332 2345577765442 34
Q ss_pred ccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhHHHH
Q 020528 237 VLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFESVK 315 (325)
Q Consensus 237 ~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~~~~ 315 (325)
.+.++++|+++.|+|+|+.++++++++++|+++||++|+++|+++++.++...++++||+|+|| |+.++++ +..+.
T Consensus 240 ~~~~~~vd~vv~V~d~ei~~ai~~l~~~~gii~EpagA~~lAal~~~~~~~~~~~~~vv~i~sG-~n~~~~~--l~~~~ 315 (499)
T TIGR01124 240 RLCQQYLDDIVTVDTDEVCAAIKDLFEDTRAVAEPAGALALAGLKKYVALHGIRGQTLVAILSG-ANMNFHR--LRYVS 315 (499)
T ss_pred HHHHHhCCEEEEECHHHHHHHHHHHHHhcCcEEechHHHHHHHHHHhhhhcCCCCCeEEEEECC-CCCCHHH--HHHHH
Confidence 4556889999999999999999999999999999999999999999876654468899999965 5655554 44443
No 34
>PRK07334 threonine dehydratase; Provisional
Probab=100.00 E-value=6.2e-59 Score=440.50 Aligned_cols=297 Identities=23% Similarity=0.278 Sum_probs=257.9
Q ss_pred ccchhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHH
Q 020528 5 KSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIG 84 (325)
Q Consensus 5 ~~~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a 84 (325)
...+.+++...+++|||+++++|+..+|.+||+|+|++|||||||||++.+++.++.+... .++||++|+||||+|
T Consensus 10 i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~~~~~~~----~~~vv~aSsGN~g~a 85 (403)
T PRK07334 10 IRAAAARLAGQVLRTPCVHSRTLSQITGAEVWLKFENLQFTASFKERGALNKLLLLTEEER----ARGVIAMSAGNHAQG 85 (403)
T ss_pred HHHHHHHHhCCCCCCCccchHHHHHhhCCeEEEEeccCCCCCCchHHHHHHHHHhcCHHHh----CCcEEEECCcHHHHH
Confidence 4567889999999999999999987778899999999999999999999999998754432 146999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhch
Q 020528 85 LAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETT 164 (325)
Q Consensus 85 lA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~ 164 (325)
+|++|+.+|++|+||||.++++.|+++++.+||+|+.+++ +++++.+.+++++++. +++|++||+|+.+ ++||+|+
T Consensus 86 lA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~--~~~~~~~~a~~l~~~~-~~~~~~~~~~~~~-~~g~~t~ 161 (403)
T PRK07334 86 VAYHAQRLGIPATIVMPRFTPTVKVERTRGFGAEVVLHGE--TLDEARAHARELAEEE-GLTFVHPYDDPAV-IAGQGTV 161 (403)
T ss_pred HHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECc--CHHHHHHHHHHHHHhc-CCEecCCCCCHHH-HHhHHHH
Confidence 9999999999999999999999999999999999999984 6889999999998886 7899999999987 6999999
Q ss_pred HHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccC---CC----CCCcccccCCCC---CC
Q 020528 165 GPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSG---GK----PGPHKIQGIGAG---FI 234 (325)
Q Consensus 165 ~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~---~~----~~~~~~~gl~~~---~~ 234 (325)
++||++|+ +.||+||+|+|+||+++|++++||..+|++||++|||++++++.. +. ...+.+++|+.+ ..
T Consensus 162 ~~Ei~~q~-~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~ve~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~ 240 (403)
T PRK07334 162 ALEMLEDA-PDLDTLVVPIGGGGLISGMATAAKALKPDIEIIGVQTELYPSMYAAIKGVALPCGGSTIAEGIAVKQPGQL 240 (403)
T ss_pred HHHHHhcC-CCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHhCCCccCCCCCccceecCCCccHH
Confidence 99999999 579999999999999999999999999999999999999987742 21 123566788743 34
Q ss_pred ccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhHHH
Q 020528 235 PGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFESV 314 (325)
Q Consensus 235 ~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~~~ 314 (325)
|+.+.++.+|+++.|+|+|+++++++|++++|+++||++|+++++++++.+. .++++||+++|| |+.+.+ ++..+
T Consensus 241 ~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~v~~s~a~~~aa~~~~~~~--~~~~~vv~i~~g-gn~d~~--~l~~i 315 (403)
T PRK07334 241 TLEIVRRLVDDILLVSEADIEQAVSLLLEIEKTVVEGAGAAGLAALLAYPER--FRGRKVGLVLSG-GNIDTR--LLANV 315 (403)
T ss_pred HHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCCEEechHHHHHHHHHhCchh--cCCCeEEEEECC-CCCCHH--HHHHH
Confidence 5666778899999999999999999999999999999999999999876543 367899999987 554444 34444
Q ss_pred H
Q 020528 315 K 315 (325)
Q Consensus 315 ~ 315 (325)
+
T Consensus 316 l 316 (403)
T PRK07334 316 L 316 (403)
T ss_pred H
Confidence 3
No 35
>PRK08639 threonine dehydratase; Validated
Probab=100.00 E-value=1.5e-58 Score=439.60 Aligned_cols=301 Identities=23% Similarity=0.328 Sum_probs=256.0
Q ss_pred ccchhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHH
Q 020528 5 KSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIG 84 (325)
Q Consensus 5 ~~~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a 84 (325)
...+++++.+.+++|||+++++|++..|++||+|+|++|||||||||+|.+++.++.+... .++||++|+||||++
T Consensus 12 i~~a~~~i~~~i~~TPl~~~~~ls~~~g~~l~~K~E~~~ptGSfK~RgA~~~i~~l~~~~~----~~~Vv~aSsGN~g~a 87 (420)
T PRK08639 12 IDKAAKRLKDVVPETPLQRNDYLSEKYGANVYLKREDLQPVRSYKLRGAYNAISQLSDEEL----AAGVVCASAGNHAQG 87 (420)
T ss_pred HHHHHHHHhCcCcCCCccchHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhh----CCEEEEECccHHHHH
Confidence 3567789999999999999999988778899999999999999999999999988533221 257999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC-CCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhc
Q 020528 85 LAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD-PARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYET 163 (325)
Q Consensus 85 lA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t 163 (325)
+|++|+.+|++|+||||++++..|+.+++.+||+|+.+. ...+++++.+.+.+++++. +++|++||+|+.+ ++||+|
T Consensus 88 lA~~a~~~G~~~~IvmP~~~~~~k~~~~r~~GA~vv~v~~~g~~~~~a~~~a~~~a~~~-g~~~~~~~~~~~~-~~G~~t 165 (420)
T PRK08639 88 VAYACRHLGIPGVIFMPVTTPQQKIDQVRFFGGEFVEIVLVGDTFDDSAAAAQEYAEET-GATFIPPFDDPDV-IAGQGT 165 (420)
T ss_pred HHHHHHHcCCCEEEEECCCChHHHHHHHHHcCCCeeEEEEeCcCHHHHHHHHHHHHHhc-CCcccCCCCChhH-hcchhH
Confidence 999999999999999999999999999999999744321 1246899999999998886 7999999999987 789999
Q ss_pred hHHHHHhhhCCC--CCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----CCcccccCCCC
Q 020528 164 TGPEIWKGTGGK--IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKP-----GPHKIQGIGAG 232 (325)
Q Consensus 164 ~~~Ei~~ql~~~--~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~----~~~~-----~~~~~~gl~~~ 232 (325)
+++||++|+++. ||+||+|+|+||+++|++.++|+..|++|||||||++++++. .+.+ ..+.++|++..
T Consensus 166 ig~EI~eq~~~~~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~gi~v~ 245 (420)
T PRK08639 166 VAVEILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGVEPAGAASMKAALEAGKPVTLEKIDKFVDGAAVA 245 (420)
T ss_pred HHHHHHHhccccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCCCcHHHHHhCCCceeCCCCCCeecccccC
Confidence 999999999655 999999999999999999999999999999999999998764 2332 23456777655
Q ss_pred CC---ccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchh
Q 020528 233 FI---PGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSV 309 (325)
Q Consensus 233 ~~---~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~ 309 (325)
.+ ++.+.++++|+++.|+|+|+.++++++++++|+++||++|+++|+++++.+. .++++||+|+| ||+.+++.
T Consensus 246 ~~g~~~~~~~~~~vd~~v~V~d~ei~~a~~~l~~~~gi~~e~sga~~lAal~~~~~~--~~~~~vv~v~s-Ggn~d~~~- 321 (420)
T PRK08639 246 RVGDLTFEILKDVVDDVVLVPEGAVCTTILELYNKEGIVAEPAGALSIAALELYKDE--IKGKTVVCVIS-GGNNDIER- 321 (420)
T ss_pred CccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCceecchHHHHHHHHHhhhhh--cCCCeEEEEeC-CCCCCHHH-
Confidence 43 2334567899999999999999999999999999999999999999886543 37789999996 57766654
Q ss_pred hhHHHHH
Q 020528 310 LFESVKK 316 (325)
Q Consensus 310 ~~~~~~~ 316 (325)
+.++..
T Consensus 322 -~~~~~~ 327 (420)
T PRK08639 322 -MPEIKE 327 (420)
T ss_pred -HHHHHH
Confidence 555543
No 36
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=100.00 E-value=3.3e-58 Score=422.27 Aligned_cols=285 Identities=20% Similarity=0.262 Sum_probs=246.4
Q ss_pred cchhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHH
Q 020528 6 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGL 85 (325)
Q Consensus 6 ~~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~al 85 (325)
..+++++...+++|||+++++|++..|.+||+|+|++|||||||||++.+++..+.+... ..+||++|+||||+|+
T Consensus 7 ~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~al 82 (317)
T TIGR02991 7 ERAAARISGRVEETPLVESPSLSELCGVPVHLKLEHRQTTGSFKLRGATNAVLSLSDTQR----AAGVVAASTGNHGRAL 82 (317)
T ss_pred HHHHHHHhCcCCCCCceechhhHHhhCCeEEEEeccCCCCCCcHHHHHHHHHHhhhHhcc----CCeEEEECCCHHHHHH
Confidence 457889999999999999999987778899999999999999999999999988764322 2569999999999999
Q ss_pred HHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchH
Q 020528 86 AFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTG 165 (325)
Q Consensus 86 A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~ 165 (325)
|++|+++|++|+||||+++++.|+++++.+||+|+.++. +++++.+.+++++++. +++|++||+|+.+ ++||+|++
T Consensus 83 A~~a~~~G~~~~v~~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~-~~g~~t~a 158 (317)
T TIGR02991 83 AYAAAEEGVRATICMSELVPQNKVDEIRRLGAEVRIVGR--SQDDAQEEVERLVADR-GLTMLPPFDHPDI-VAGQGTLG 158 (317)
T ss_pred HHHHHHhCCCEEEEcCCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEeeCCCCChHH-HhhHHHHH
Confidence 999999999999999999999999999999999999995 5788888899988876 7899999999987 78999999
Q ss_pred HHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----CCcccccCC----C-
Q 020528 166 PEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKP-----GPHKIQGIG----A- 231 (325)
Q Consensus 166 ~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~----~~~~-----~~~~~~gl~----~- 231 (325)
+||++|+ +++|+||+|+|+||+++|++++||+++|.+|||+|||++++++. .+++ .++.+++++ .
T Consensus 159 ~Ei~~q~-~~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~~l~~g~~~~ 237 (317)
T TIGR02991 159 LEVVEQM-PDLATVLVPLSGGGLASGVAMAVKAARPDTRVIGVSMERGAAMKASLQAGRPVLVAELPTLADSLGGGIGLD 237 (317)
T ss_pred HHHHHhC-CCCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEEEECCchHHHHHHHcCCcccCCCCCChhhhhhhccCCC
Confidence 9999999 47899999999999999999999999999999999999887764 2332 234455442 1
Q ss_pred CCCccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCC
Q 020528 232 GFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFG 302 (325)
Q Consensus 232 ~~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g 302 (325)
...++.+.++++|+++.|+|+|+++++++|++++|+++||++|+++|++.+.. ...+++||+++|+++
T Consensus 238 ~~~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~~g~~ve~s~a~~~Aal~~~~---~~~~~~vvvvltG~n 305 (317)
T TIGR02991 238 NRVTFAMCKALLDEIVLVSEAEIAAGIRHAYAEEREIVEGAGAVGIAALLAGK---IKNPGPCAVIVSGRN 305 (317)
T ss_pred CHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhCCcEEcchHHHHHHHHHcCc---cccCCcEEEEeCCCC
Confidence 12345566788999999999999999999999999999999999999997421 124678999997654
No 37
>PRK06815 hypothetical protein; Provisional
Probab=100.00 E-value=1.4e-58 Score=425.39 Aligned_cols=289 Identities=25% Similarity=0.306 Sum_probs=250.4
Q ss_pred ccchhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHH
Q 020528 5 KSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIG 84 (325)
Q Consensus 5 ~~~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a 84 (325)
....++++.+.+++|||+++++|+...|.+||+|+|++|||||||||++.+++..+.+... .++||++|+||||+|
T Consensus 7 i~~a~~~~~~~i~~TPLv~~~~l~~~~g~~i~~K~E~~nptgS~KdR~a~~~~~~l~~~~~----~~~vv~aSsGN~g~a 82 (317)
T PRK06815 7 ILEAHQRLRPQVRVTPLEHSPLLSQHTGCEVYLKCEHLQHTGSFKFRGASNKLRLLNEAQR----QQGVITASSGNHGQG 82 (317)
T ss_pred HHHHHHHhhCCCCCCCccccHhHHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhhc----CceEEEECCChHHHH
Confidence 3567788999999999999999987778899999999999999999999999987643322 256999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhch
Q 020528 85 LAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETT 164 (325)
Q Consensus 85 lA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~ 164 (325)
+|++|+.+|++|+||||.++++.|+.+++.+||+|+.+++ +++++...+++++++. +++|++||+|+.+ +.||+++
T Consensus 83 lA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~-~~g~~t~ 158 (317)
T PRK06815 83 VALAAKLAGIPVTVYAPEQASAIKLDAIRALGAEVRLYGG--DALNAELAARRAAEQQ-GKVYISPYNDPQV-IAGQGTI 158 (317)
T ss_pred HHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEecCCCChhh-hcchhHH
Confidence 9999999999999999999999999999999999999996 4788888888888776 7889999999886 6899999
Q ss_pred HHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccC----CCC-----CCcccccCCCCCCc
Q 020528 165 GPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSG----GKP-----GPHKIQGIGAGFIP 235 (325)
Q Consensus 165 ~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~----~~~-----~~~~~~gl~~~~~~ 235 (325)
++||++|++ .||+||+|+|+||+++|++++||+.+|++|||||||++++++.. +.+ ..+.+++++.+..|
T Consensus 159 a~Ei~~q~~-~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~ 237 (317)
T PRK06815 159 GMELVEQQP-DLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGCWPANSPSLYTSLEAGEIVEVAEQPTLSDGTAGGVEP 237 (317)
T ss_pred HHHHHHhcC-CCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCcccCCCCCChhhhhccCCcc
Confidence 999999994 69999999999999999999999999999999999999987742 322 12355666443322
Q ss_pred ----cccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCC
Q 020528 236 ----GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGER 304 (325)
Q Consensus 236 ----~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~ 304 (325)
..+..+++|+++.|+|+|+++++++|++++|+++||++|+++++++++.++ .++++||+|+||++.+
T Consensus 238 ~~~~~~~~~~~~~~~~~V~d~e~~~a~~~la~~~gi~vepssg~alaa~~~~~~~--~~~~~vv~i~tG~~~~ 308 (317)
T PRK06815 238 GAITFPLCQQLIDQKVLVSEEEIKEAMRLIAETDRWLIEGAAGVALAAALKLAPR--YQGKKVAVVLCGKNIV 308 (317)
T ss_pred cHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCCeEecHHHHHHHHHHhCchh--cCCCcEEEEECCCCCC
Confidence 234457889999999999999999999999999999999999999987655 3678999999887754
No 38
>PRK07409 threonine synthase; Validated
Probab=100.00 E-value=4e-58 Score=428.32 Aligned_cols=289 Identities=24% Similarity=0.294 Sum_probs=249.3
Q ss_pred hHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHH
Q 020528 9 AKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFM 88 (325)
Q Consensus 9 ~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~ 88 (325)
..++++++|+|||++++.|+...|.+||+|+|++|||||||||++.+++..+.++|. .+||++|+||||+|+|++
T Consensus 22 ~~~~~l~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~-----~~iv~aSsGN~g~alA~~ 96 (353)
T PRK07409 22 TPVVTLGEGNTPLIPAPNLSELLGVEVYVKYEGLNPTGSFKDRGMTMAVTKAKEEGA-----KAVICASTGNTSASAAAY 96 (353)
T ss_pred cCcccCCCCCCCEEEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHHH
Confidence 344788999999999999987677899999999999999999999999999998886 679999999999999999
Q ss_pred HHHcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHH
Q 020528 89 AAAKGYRLIITMPAS-MSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPE 167 (325)
Q Consensus 89 a~~~g~~~~i~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~E 167 (325)
|+.+|++|+||||++ .+..|+++++.+||+|+.+++ +++++.+.+++++++. +++++++ .|+.+ +.||.++++|
T Consensus 97 a~~~G~~~~ivvP~~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~l~~~~-~~~~~~~-~n~~~-~~g~~t~~~E 171 (353)
T PRK07409 97 AARAGLKAFVLIPEGKIALGKLAQAVMYGAEIIQIDG--NFDDALEIVRELAEKY-PVTLVNS-VNPYR-IEGQKTAAFE 171 (353)
T ss_pred HHHcCCCEEEEEcCCCCchhhHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-CceecCC-CCchh-hhhHHHHHHH
Confidence 999999999999998 689999999999999999996 5889999999988876 4777775 58887 6899999999
Q ss_pred HHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCC------CcEEEEEecCCCccccCCCCC---CcccccCCCCCCcccc
Q 020528 168 IWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNP------EIKLYGVEPVESAVLSGGKPG---PHKIQGIGAGFIPGVL 238 (325)
Q Consensus 168 i~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~------~~~vigV~~~~~~~~~~~~~~---~~~~~gl~~~~~~~~~ 238 (325)
|++|+...||+||+|+|+||+++|++++|++..+ .+|||+|||.+++++..+.+. .+..++++.+. |..+
T Consensus 172 I~~q~~~~~d~iv~~vG~GG~~~Gi~~g~~~~~~~~~~~~~~kvigVep~g~~~~~~g~~~~~~~ti~~~l~~~~-~~~~ 250 (353)
T PRK07409 172 IVDALGDAPDYHCIPVGNAGNITAYWKGYKEYHQDGKSTKLPRMMGFQAAGAAPIVRGEPVKNPETIATAIRIGN-PASW 250 (353)
T ss_pred HHHHhCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCccCCCeEEEEecCCCChHhhCCcCCCCcceeeeeecCC-CCCH
Confidence 9999966799999999999999999999998754 489999999999877655432 22334554332 3332
Q ss_pred c------cccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCC-CCCCEEEEEeCCCCCCCcch
Q 020528 239 D------VNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE-NAGKLIVVVFPSFGERYLSS 308 (325)
Q Consensus 239 ~------~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~-~~~~~vv~i~t~~g~~~~~~ 308 (325)
. ....++.+.|+|+|++++++++++++|+++||++|+++++++++.+++. .++++||+++||+|+||+++
T Consensus 251 ~~~~~~~~~~~~~~v~Vsd~e~~~a~~~l~~~egi~v~pssa~alaa~~~~~~~~~~~~~~~VV~i~tg~g~k~~~~ 327 (353)
T PRK07409 251 DKAVAARDESGGLIDAVTDEEILEAYRLLARKEGVFCEPASAASVAGLLKAIRAGKIPEGSTVVCTLTGNGLKDPDT 327 (353)
T ss_pred HHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhCCceeCchHHHHHHHHHHHHHcCCCCCCCcEEEEecCccccchHH
Confidence 2 2345679999999999999999999999999999999999999877643 46789999999999999987
No 39
>PRK02991 D-serine dehydratase; Provisional
Probab=100.00 E-value=5.6e-58 Score=433.71 Aligned_cols=300 Identities=21% Similarity=0.230 Sum_probs=253.6
Q ss_pred hhCCCCceecccccCCCC--------ceEEEEeCCCCC-CCChhhHHHHHHHHH-----HHHhCCCCCCC----------
Q 020528 15 LIGKTPLVYLNRIVDGCV--------ARIAAKLEMMEP-CSSVKDRIGYSMIAD-----AEEKGLIRPGE---------- 70 (325)
Q Consensus 15 ~~~~TPL~~~~~l~~~~~--------~~l~~K~E~~np-tGS~K~R~a~~~~~~-----a~~~g~~~~g~---------- 70 (325)
++++|||++++.++..+| .+||+|+|++|| |||||+|++.+++.. +++.|.+.++.
T Consensus 72 ~~~~TPL~~~~~l~~~~g~~~~~~~~~~V~lK~E~~np~tGSFK~RGA~~~i~~l~~~~a~~~G~~~~~~~~~~l~~~~~ 151 (441)
T PRK02991 72 GIIESPLVAIPAMQKALEKEYGQPISGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLDDDYSKLASPEF 151 (441)
T ss_pred CccCCCceehHHHHHHhcccccCCcCceEEEEEcCCCCCcCChHHHHHHHHHHHhhHHHHHHhCCCCcCcchhhhcchhh
Confidence 389999999999886544 699999999999 999999999998865 56778776653
Q ss_pred ------eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCC
Q 020528 71 ------SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPN 144 (325)
Q Consensus 71 ------~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~ 144 (325)
.+||++|+||||+|+|++|+.+|++|+||||++++..|+++++.|||+|+.+++ +++++.+.+++++++.++
T Consensus 152 ~~~~~~~~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a~~~K~~~ir~~GAeVi~~~~--~~~~a~~~A~~la~~~~~ 229 (441)
T PRK02991 152 RQFFSQYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARQWKKDKLRSHGVTVVEYEG--DYGVAVEEGRKAAESDPN 229 (441)
T ss_pred hhhccCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhcCC
Confidence 479999999999999999999999999999999999999999999999999995 689999999999888656
Q ss_pred eEEeCCCCCCcchHhHHhchHHHHHhhhCC--------CCCEEEEecCCchhHHHHHHHHHhh-CCCcEEEEEecCCCcc
Q 020528 145 SYVLQQFENPANPKIHYETTGPEIWKGTGG--------KIDALVSGIGTGGTVTGAGKYLKEH-NPEIKLYGVEPVESAV 215 (325)
Q Consensus 145 ~~~~~~~~n~~~~~~g~~t~~~Ei~~ql~~--------~~D~iv~pvG~Gg~~aGi~~~~k~~-~~~~~vigV~~~~~~~ 215 (325)
++|+++++++.+ ++||+|+++||++|+.+ .||+||+|+|+||+++|++++||+. .|++|||+|||+++++
T Consensus 230 ~~~~~~~~~~~~-iaG~~Tig~EI~eQl~~~~~~vD~~~Pd~VvvpvGgGGliaGia~~lk~~~~~~~kVigVEp~ga~~ 308 (441)
T PRK02991 230 CYFIDDENSRTL-FLGYAVAGLRLKAQLAEQGIVVDADHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPC 308 (441)
T ss_pred eEeCCCCCchhH-HHhHHHHHHHHHHHhhhccCccccCCCCEEEEEeCccHHHHHHHHHHHHhcCCCCEEEEEecCCChH
Confidence 899999877765 89999999999999952 2679999999999999999999997 6889999999999976
Q ss_pred cc----CCCC-----------CCcccccCCCCCC---ccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHH
Q 020528 216 LS----GGKP-----------GPHKIQGIGAGFI---PGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAAT 277 (325)
Q Consensus 216 ~~----~~~~-----------~~~~~~gl~~~~~---~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~ 277 (325)
+. .+++ ..+.++|++.+.+ ++.+.++.+|+++.|+|+|+++++++|++++|+++||++|+++
T Consensus 309 ~~~s~~~G~~~~~~~~~~g~~~~Tiadgl~~~~~~~~~~~~~~~~vd~~v~VsD~ei~~a~~~L~~~~gi~vEpS~Aaal 388 (441)
T PRK02991 309 MLLGLMTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAMERLLDGVYTVSDETLYRLLGLLADTEGIRLEPSALAGM 388 (441)
T ss_pred HHHHHhcCCCcceeccccCCCCcchhhhhcCCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCceeeHHHHHHH
Confidence 53 2331 2245577776543 2334457899999999999999999999999999999999999
Q ss_pred HHHHHHHhcCC-------C---CCCEEEEEeCCCCCCCcchhhhHHHHHHhc
Q 020528 278 AAAIQIAKRPE-------N---AGKLIVVVFPSFGERYLSSVLFESVKKEAE 319 (325)
Q Consensus 278 aa~~~~~~~~~-------~---~~~~vv~i~t~~g~~~~~~~~~~~~~~~~~ 319 (325)
|+++++.++.. . ++++||++.|+|..++.+ .++++++...
T Consensus 389 Aa~~~l~~~~~~~~~~~l~~~~~~~~vv~~~~gg~~~~~~--~~~~~~~~~~ 438 (441)
T PRK02991 389 AGPVRVCASVAYLQRHGLSEQLKNATHLVWATGGSMVPEE--EMEQYLAKGR 438 (441)
T ss_pred HHHHHHHhCHHHHHHcCCccccCCCEEEEEECCCCCCCHH--HHHHHHHhhh
Confidence 99987655321 1 578999999988887655 4666666543
No 40
>PRK08813 threonine dehydratase; Provisional
Probab=100.00 E-value=7.2e-58 Score=420.85 Aligned_cols=284 Identities=24% Similarity=0.291 Sum_probs=246.6
Q ss_pred cchhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHH
Q 020528 6 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGL 85 (325)
Q Consensus 6 ~~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~al 85 (325)
...+++|...+++|||++++.+ +||+|+|++|||||||||++.+++.++.+.|.. +.||++|+||||.|+
T Consensus 27 ~~A~~~i~~~i~~TPL~~~~~l------~v~lK~E~~nptGSfK~RgA~~~l~~a~~~~~~----~~VV~aSsGN~G~al 96 (349)
T PRK08813 27 LAAQARLRRYLSPTPLHYAERF------GVWLKLENLQRTGSYKVRGALNALLAGLERGDE----RPVICASAGNHAQGV 96 (349)
T ss_pred HHHHHHHhCcCCCCCeEECCCC------cEEEEecCCCCcCCCHHHHHHHHHHHHHHcCCC----CeEEEECCCHHHHHH
Confidence 4567899999999999998765 499999999999999999999999999998863 469999999999999
Q ss_pred HHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchH
Q 020528 86 AFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTG 165 (325)
Q Consensus 86 A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~ 165 (325)
|++|+.+|++|+||||.++++.|+.+++.|||+|+.+++ +++++.+.+++++++. +++|++||+|+.+ ++||+|++
T Consensus 97 A~aa~~~Gi~~~IvvP~~~~~~K~~~i~~~GAeVv~~g~--~~~~a~~~a~~la~~~-g~~~v~~~~np~~-i~G~~Tig 172 (349)
T PRK08813 97 AWSAYRLGVQAITVMPHGAPQTKIAGVAHWGATVRQHGN--SYDEAYAFARELADQN-GYRFLSAFDDPDV-IAGQGTVG 172 (349)
T ss_pred HHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEcCccCChHH-HHHHHHHH
Confidence 999999999999999999999999999999999999985 6899999999999886 7999999999997 78999999
Q ss_pred HHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccC---CC-----CCCcccccCCCCC---C
Q 020528 166 PEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSG---GK-----PGPHKIQGIGAGF---I 234 (325)
Q Consensus 166 ~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~---~~-----~~~~~~~gl~~~~---~ 234 (325)
+||++|. ||+||+|+|+||+++|+++++|+ +.+|||||||++++++.. +. +..+.++|++... .
T Consensus 173 ~EI~e~~---pD~VvvpvGgGGliaGia~~lk~--~~~rVigVqpega~~~~~s~~g~~~~~~~~~tiadgl~~~~p~~~ 247 (349)
T PRK08813 173 IELAAHA---PDVVIVPIGGGGLASGVALALKS--QGVRVVGAQVEGVDSMARAIRGDLREIAPVATLADGVKVKIPGFL 247 (349)
T ss_pred HHHHcCC---CCEEEEEeCccHHHHHHHHHHhc--CCCEEEEEEECCCchHHHHHcCCCcccCCCCceecccccCCcchh
Confidence 9999873 79999999999999999999996 579999999999987531 22 2235667776432 3
Q ss_pred ccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhHHH
Q 020528 235 PGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFESV 314 (325)
Q Consensus 235 ~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~~~ 314 (325)
++.+.++.+|+++.|+|+|+.+++++|++++|+++||++|+++|+++++ ++++|++|+| |||.++++ +..+
T Consensus 248 ~~~i~~~~vd~vv~Vsd~ei~~a~~~l~~~~gl~vE~aga~alAa~~~~------~~~~v~~vls-GgN~d~~~--~~~~ 318 (349)
T PRK08813 248 TRRLCSSLLDDVVIVREAELRETLVRLALEEHVIAEGAGALALAAGRRV------SGKRKCAVVS-GGNIDATV--LATL 318 (349)
T ss_pred HHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEEEEcHHHHHHHHHHh------CCCCEEEEEC-CCCCCHHH--HHHH
Confidence 4455667899999999999999999999999999999999999998763 4568999995 56765554 5555
Q ss_pred HHH
Q 020528 315 KKE 317 (325)
Q Consensus 315 ~~~ 317 (325)
+..
T Consensus 319 ~~~ 321 (349)
T PRK08813 319 LSE 321 (349)
T ss_pred HHh
Confidence 543
No 41
>PLN02569 threonine synthase
Probab=100.00 E-value=7.3e-58 Score=437.49 Aligned_cols=292 Identities=19% Similarity=0.174 Sum_probs=251.2
Q ss_pred HHHhhhhCCCCceecccccCC-CC-ceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHH
Q 020528 10 KDVTELIGKTPLVYLNRIVDG-CV-ARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAF 87 (325)
Q Consensus 10 ~~i~~~~~~TPL~~~~~l~~~-~~-~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~ 87 (325)
..+++++|+|||+++++|++. +| .+||+|+|++|||||||||++.+.+..+.+.|........|+++|+||||.|+|+
T Consensus 125 ~~vsl~eG~TPLv~~~~l~~~~~G~~~l~~K~E~~nPTGSFKDRga~~~vs~a~~~g~~~~~~~~Vv~ASSGN~GaAlAa 204 (484)
T PLN02569 125 DIVSLFEGNSNLFWAERLGKEFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMAKPVVGVGCASTGDTSAALSA 204 (484)
T ss_pred cceecCCCCCceeEhhhhhHhhcCCccEEEEECCCCCCcCHHHHHHHHHHHHHHHhhhccCCccEEEEeCCcHHHHHHHH
Confidence 348899999999999999876 66 4899999999999999999999999999887753211257999999999999999
Q ss_pred HHHHcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHH
Q 020528 88 MAAAKGYRLIITMPAS-MSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGP 166 (325)
Q Consensus 88 ~a~~~g~~~~i~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~ 166 (325)
+|+.+|++|+||+|++ .+..|+.+++.+||+|+.+++ +++++.+.+++++++. ++|+++++ |+.+ ++||+|+++
T Consensus 205 yaa~~Gl~~~I~vP~~~~~~~k~~qi~a~GA~Vi~v~g--~~d~a~~~a~e~~~~~-~~~~~n~~-Np~~-ieG~kT~a~ 279 (484)
T PLN02569 205 YCAAAGIPSIVFLPADKISIAQLVQPIANGALVLSIDT--DFDGCMRLIREVTAEL-PIYLANSL-NSLR-LEGQKTAAI 279 (484)
T ss_pred HHHhcCCeEEEEEcCCCCCHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHHc-CCEecCCC-Ccch-hHhHHHHHH
Confidence 9999999999999997 788999999999999999996 6899999999988876 68999988 8887 789999999
Q ss_pred HHHhhhCCC-CCEEEEecCCchhHHHHHHHHHhhC------CCcEEEEEecCCCcccc----CCC-------CCCccccc
Q 020528 167 EIWKGTGGK-IDALVSGIGTGGTVTGAGKYLKEHN------PEIKLYGVEPVESAVLS----GGK-------PGPHKIQG 228 (325)
Q Consensus 167 Ei~~ql~~~-~D~iv~pvG~Gg~~aGi~~~~k~~~------~~~~vigV~~~~~~~~~----~~~-------~~~~~~~g 228 (325)
||++|+++. ||+||+|+|+||+++|++++||++. +.+|||+||+++++++. .+. ..++.+++
T Consensus 280 EI~eQl~~~~pD~VvvPvG~Gg~l~Gi~kgfkel~~~G~i~~~Priv~Vqa~g~~pl~~a~~~G~~~~~~~~~~~T~A~g 359 (484)
T PLN02569 280 EILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCKELGLVDRLPRLVCAQAANANPLYRAYKSGWEEFKPVKANPTFASA 359 (484)
T ss_pred HHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHHcCCCCCCCeEEEEeeCCCcHHHHHHHcCCCccccCCCCCccchh
Confidence 999999765 9999999999999999999999974 45899999999998764 232 13455677
Q ss_pred CCCCCCcccccc------ccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCC-CCCCEEEEEeCCC
Q 020528 229 IGAGFIPGVLDV------NLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE-NAGKLIVVVFPSF 301 (325)
Q Consensus 229 l~~~~~~~~~~~------~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~-~~~~~vv~i~t~~ 301 (325)
|+.+. |..+.. +.-+.++.|+|+|+++++++ ++++|+++||+||+++++++++.+++. .++++||+++||+
T Consensus 360 i~i~~-P~~~~~~l~al~~s~g~~v~VsDeEi~~a~~~-a~~~Gi~vepssAaalAal~kl~~~g~i~~~~~VV~i~Tg~ 437 (484)
T PLN02569 360 IQIGD-PVSIDRAVYALKESNGIVEEATEEELMDAQAE-ADKTGMFLCPHTGVALAALKKLRASGVIGPTDRTVVVSTAH 437 (484)
T ss_pred hccCC-CccHHHHHHHHHHhCCEEEEECHHHHHHHHHH-HHHCCcEECchHHHHHHHHHHHHHcCCCCCCCcEEEEeCCC
Confidence 76653 444322 22344799999999999999 999999999999999999999988764 5678999999999
Q ss_pred CCCCcch
Q 020528 302 GERYLSS 308 (325)
Q Consensus 302 g~~~~~~ 308 (325)
|.||.+.
T Consensus 438 GlK~~~~ 444 (484)
T PLN02569 438 GLKFTQS 444 (484)
T ss_pred cccChhH
Confidence 9999885
No 42
>PRK09224 threonine dehydratase; Reviewed
Probab=100.00 E-value=1.6e-57 Score=439.86 Aligned_cols=297 Identities=24% Similarity=0.326 Sum_probs=256.6
Q ss_pred hHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHH
Q 020528 9 AKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFM 88 (325)
Q Consensus 9 ~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~ 88 (325)
..++...+++|||+++++|++.+|.+||+|+|++|||||||+|+|.+++..+.+... .++||++|+||||+|+|++
T Consensus 11 ~~~v~~~~~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~----~~gvV~aSaGNha~avA~a 86 (504)
T PRK09224 11 TARVYDVAQETPLEKAPKLSARLGNQVLLKREDLQPVFSFKLRGAYNKMAQLTEEQL----ARGVITASAGNHAQGVALS 86 (504)
T ss_pred HHHhcCcCCCCCceehhHhHHHhCCEEEEEecCCCCCCCChHHHHHHHHHhhhHHhc----CCEEEEECcCHHHHHHHHH
Confidence 357778899999999999998888899999999999999999999999988764322 2679999999999999999
Q ss_pred HHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHHH
Q 020528 89 AAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEI 168 (325)
Q Consensus 89 a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei 168 (325)
|+++|++|+||||++++..|++.++.+||+|+.++. +++++.+.+++++++. +++|++||+|+.+ ++|++|+++||
T Consensus 87 a~~lGi~~~IvmP~~tp~~K~~~~r~~GA~Vi~~g~--~~~~a~~~a~~l~~~~-g~~~v~~f~~~~~-i~G~gTi~~EI 162 (504)
T PRK09224 87 AARLGIKAVIVMPVTTPDIKVDAVRAFGGEVVLHGD--SFDEAYAHAIELAEEE-GLTFIHPFDDPDV-IAGQGTIAMEI 162 (504)
T ss_pred HHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcHH-HHhHHHHHHHH
Confidence 999999999999999999999999999999999984 6899999999998886 7899999999987 79999999999
Q ss_pred HhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCCC-----CcccccCCCCCC---cc
Q 020528 169 WKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKPG-----PHKIQGIGAGFI---PG 236 (325)
Q Consensus 169 ~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~----~~~~~-----~~~~~gl~~~~~---~~ 236 (325)
++|++..||+||+|+|+||+++|++.++|...|++|||||||++++++. .+++. .+.+++++...+ ++
T Consensus 163 ~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVigVe~~~~~~~~~s~~~g~~~~~~~~~~~adg~av~~~g~~~~ 242 (504)
T PRK09224 163 LQQHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVEPEDSACLKAALEAGERVDLPQVGLFADGVAVKRIGEETF 242 (504)
T ss_pred HHhccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCCccCCCCCcccCcccCCCccHHHH
Confidence 9999655999999999999999999999999999999999999998774 23331 234566654432 33
Q ss_pred ccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhHHHHH
Q 020528 237 VLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFESVKK 316 (325)
Q Consensus 237 ~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~~~~~ 316 (325)
.+.++++|+++.|+|+|+.++++++++++|+++||++|+++|+++++.++...++++||+|+|| |+.++++ +..+.+
T Consensus 243 ~~~~~~vd~~v~Vsd~ei~~a~~~l~~~~~~~~epagA~~lAal~~~~~~~~~~g~~vv~i~sG-~n~~~~~--l~~~~~ 319 (504)
T PRK09224 243 RLCQEYVDDVITVDTDEICAAIKDVFEDTRSIAEPAGALALAGLKKYVAQHGIEGETLVAILSG-ANMNFDR--LRYVAE 319 (504)
T ss_pred HHHHhcCCeEEEECHHHHHHHHHHHHHhcCeEEcHHHHHHHHHHHHhhhhcCCCCCeEEEEECC-CCCCHHH--HHHHHH
Confidence 4457889999999999999999999999999999999999999999876654468899999976 5544443 555443
No 43
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=100.00 E-value=6.1e-58 Score=431.68 Aligned_cols=284 Identities=24% Similarity=0.341 Sum_probs=248.0
Q ss_pred CCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEE
Q 020528 19 TPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLII 98 (325)
Q Consensus 19 TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i 98 (325)
|||+++++|++..|++||+|+|++|||||||||+|.+++..+.+++.. ++||++|+||||+|+|++|+++|++|+|
T Consensus 1 TPl~~~~~ls~~~g~~i~~K~E~~~ptgS~K~R~a~~~i~~~~~~~~~----~~vv~aSsGN~g~alA~~a~~~G~~~~i 76 (380)
T TIGR01127 1 TPLIYSTTLSDITGSEVYLKLENLQKTGSFKIRGALNKIANLSEDQRQ----RGVVAASAGNHAQGVAYAAKKFGIKAVI 76 (380)
T ss_pred CCceehHHHHHHhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhccC----CEEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence 899999999988888999999999999999999999999999888763 4799999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHHHHhhhCCCCCE
Q 020528 99 TMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDA 178 (325)
Q Consensus 99 ~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~ql~~~~D~ 178 (325)
|||+.++..|+++++.+||+|+.++. +++++.+.+++++++. +++|++||+|+.+ ++||+|+++||++|+ +.||+
T Consensus 77 v~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~a~~~a~~~~~~~-~~~~~~~~~~~~~-~~g~~t~~~Ei~~q~-~~~D~ 151 (380)
T TIGR01127 77 VMPESAPPSKVKATKSYGAEVILHGD--DYDEAYAFATSLAEEE-GRVFVHPFDDEFV-MAGQGTIGLEIMEDI-PDVDT 151 (380)
T ss_pred EEcCCCcHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCCCCChhh-hhhhHHHHHHHHHhC-CCCCE
Confidence 99999999999999999999999984 6899999999998886 7899999999987 799999999999999 47999
Q ss_pred EEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCCC-----CcccccCCCCC---CccccccccCCeE
Q 020528 179 LVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKPG-----PHKIQGIGAGF---IPGVLDVNLLDET 246 (325)
Q Consensus 179 iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~----~~~~~-----~~~~~gl~~~~---~~~~~~~~~~d~~ 246 (325)
||+|+|+||+++|++.++|...|++|||||||++++++. .+++. .+.++|++... .++.+..+++|++
T Consensus 152 vv~~vG~Gg~~aGi~~~~k~~~p~~kvigVe~~~~~~~~~~~~~g~~~~~~~~~~~a~g~~~~~~~~~~~~~~~~~vd~~ 231 (380)
T TIGR01127 152 VIVPVGGGGLISGVASAAKQINPNVKVIGVEAEGAPSMYESLREGKIKAVESVRTIADGIAVKKPGDLTFNIIKEYVDDV 231 (380)
T ss_pred EEEEeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcCCceecCCCCCeecchhCCCccHHHHHHHHHhCCEE
Confidence 999999999999999999999999999999999998764 34322 34556776433 2333456789999
Q ss_pred EEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchhhhHHHHH
Q 020528 247 VQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVLFESVKK 316 (325)
Q Consensus 247 ~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~~~~~~~~ 316 (325)
+.|+|+|+.+++++|++++|+++||++|++++++++.... .++++||+++|| |+.+.| ++..+..
T Consensus 232 v~V~d~e~~~a~~~l~~~~gi~~e~s~a~~laa~~~~~~~--~~~~~vv~i~sG-Gn~d~d--~l~~vi~ 296 (380)
T TIGR01127 232 VTVDEEEIANAIYLLLERHKILAEGAGAAGVAALLEQKVD--VKGKKIAVVLSG-GNIDLN--LLNKIIE 296 (380)
T ss_pred EEECHHHHHHHHHHHHHhcCeEechHHHHHHHHHHhCccc--cCCCeEEEEeCC-CCCCHH--HHHHHHH
Confidence 9999999999999999999999999999999999874322 367899999975 775544 4655543
No 44
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=100.00 E-value=6e-58 Score=420.05 Aligned_cols=288 Identities=25% Similarity=0.326 Sum_probs=252.6
Q ss_pred cccchhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHH
Q 020528 4 EKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGI 83 (325)
Q Consensus 4 ~~~~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~ 83 (325)
..++++++|.+.+|+|||+++++|+..+|.+||+|+|++|||||||||++.+++.++.+.|. ..+||++|+||||+
T Consensus 3 ~~~~~~~~i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptgS~Kdr~a~~~l~~~~~~~~----~~~iv~~ssGN~g~ 78 (304)
T cd01562 3 DILAAAARIKPVVRRTPLLTSPTLSELLGAEVYLKCENLQKTGSFKIRGAYNKLLSLSEEER----AKGVVAASAGNHAQ 78 (304)
T ss_pred HHHHHHHHHhCcCCCCCcccchhhHHHhCCeEEEEeccCCCcCCcHHHhHHHHHHhcCHhhc----CCcEEEECCCHHHH
Confidence 34678899999999999999999987778899999999999999999999999999987763 25699999999999
Q ss_pred HHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhc
Q 020528 84 GLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYET 163 (325)
Q Consensus 84 alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t 163 (325)
|+|++|+.+|++|++|+|.+.+..|+++++.+||+|+.+++ +++++.+.+++++++. +++|++||+|+.+ ..|+++
T Consensus 79 alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~Ga~vi~~~~--~~~~~~~~a~~la~~~-~~~~~~~~~n~~~-~~g~~~ 154 (304)
T cd01562 79 GVAYAAKLLGIPATIVMPETAPAAKVDATRAYGAEVVLYGE--DFDEAEAKARELAEEE-GLTFIHPFDDPDV-IAGQGT 154 (304)
T ss_pred HHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcch-hccHHH
Confidence 99999999999999999999999999999999999999996 4889999999998886 7899999999987 689999
Q ss_pred hHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCCC-----CcccccCCCCCC
Q 020528 164 TGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKPG-----PHKIQGIGAGFI 234 (325)
Q Consensus 164 ~~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~----~~~~~-----~~~~~gl~~~~~ 234 (325)
+++||++|+. .||+||+|+|+||+++|++++||+.+|.+|||+|+|.+++++. .+... .+..++++....
T Consensus 155 ~~~Ei~~q~~-~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~ 233 (304)
T cd01562 155 IGLEILEQVP-DLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVEPEGAPAMAQSLAAGKPVTLPEVDTIADGLAVKRP 233 (304)
T ss_pred HHHHHHHhcC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHcCCcccCCCCCcccccccCCCc
Confidence 9999999995 5999999999999999999999999999999999999987763 23221 233345543321
Q ss_pred ---ccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCC
Q 020528 235 ---PGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFG 302 (325)
Q Consensus 235 ---~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g 302 (325)
++.+..+++|+++.|+|+|+++++++|++++|+++||+||+++++++++.++. ++++||+++|||.
T Consensus 234 ~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~a~a~~~~~~~~~--~~~~vv~i~tGG~ 302 (304)
T cd01562 234 GELTFEIIRKLVDDVVTVSEDEIAAAMLLLFEREKLVAEPAGALALAALLSGKLDL--KGKKVVVVLSGGN 302 (304)
T ss_pred hHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCceEchhHHHHHHHHHhCcccc--CCCeEEEEecCCC
Confidence 23345577899999999999999999999999999999999999999987654 6789999998764
No 45
>PRK08329 threonine synthase; Validated
Probab=100.00 E-value=2e-57 Score=421.99 Aligned_cols=278 Identities=23% Similarity=0.242 Sum_probs=244.5
Q ss_pred HHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHHH
Q 020528 11 DVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAA 90 (325)
Q Consensus 11 ~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~ 90 (325)
.+++++|.|||+++. .+||+|+|++|||||||||++.+++.++.+.|. ++||++|+||||+|+|++|+
T Consensus 57 ~~sl~eg~Tpl~~~~-------~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~aa 124 (347)
T PRK08329 57 LPHLTPPITPTVKRS-------IKVYFKLDYLQPTGSFKDRGTYVTVAKLKEEGI-----NEVVIDSSGNAALSLALYSL 124 (347)
T ss_pred CCcCCCCCCccccCC-------CeEEEEeCCCCCCcCCHHHHHHHHHHHHHHcCC-----CEEEEECCCcHHHHHHHHHH
Confidence 368899999999973 489999999999999999999999999999886 68999999999999999999
Q ss_pred HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHHHHh
Q 020528 91 AKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWK 170 (325)
Q Consensus 91 ~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~ 170 (325)
++|++|+||||.+++..|+.+++.+||+|+.+++ +++++.+.+++++++. +++|++++.||.+ ++||+|+++||++
T Consensus 125 ~~G~~~~v~vp~~~~~~k~~~~~~~GA~v~~v~~--~~~~~~~~a~~l~~~~-~~~~~~~~~np~~-~eG~~t~~~Ei~e 200 (347)
T PRK08329 125 SEGIKVHVFVSYNASKEKISLLSRLGAELHFVEG--DRMEVHEEAVKFSKRN-NIPYVSHWLNPYF-LEGTKTIAYEIYE 200 (347)
T ss_pred HcCCcEEEEECCCChHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCeeccCCCCchh-hccchhHHHHHHH
Confidence 9999999999999999999999999999999986 4677788888887775 6788899889987 7899999999999
Q ss_pred hhCCCCCEEEEecCCchhHHHHHHHHHhhC------CCcEEEEEecCCCccccC-CCCCCcccccCCCCCCccc-----c
Q 020528 171 GTGGKIDALVSGIGTGGTVTGAGKYLKEHN------PEIKLYGVEPVESAVLSG-GKPGPHKIQGIGAGFIPGV-----L 238 (325)
Q Consensus 171 ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~------~~~~vigV~~~~~~~~~~-~~~~~~~~~gl~~~~~~~~-----~ 238 (325)
|++ .||+||+|+|+||+++|++++||++. +.+|+|+|||++++++.. .....+.+++++.+.++.. +
T Consensus 201 ql~-~pD~vvvpvG~Gg~l~Gi~~g~kel~~~g~i~~~p~ii~Vq~~g~~~~~~~~~~~~t~a~gi~i~~~~~~~~~~~~ 279 (347)
T PRK08329 201 QIG-VPDYAFVPVGSGTLFLGIWKGFKELHEMGEISKMPKLVAVQAEGYESLCKRSKSENKLADGIAIPEPPRKEEMLRA 279 (347)
T ss_pred HcC-CCCEEEEeCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCchHHhccCCCCceeeeEEeCCCCCHHHHHHH
Confidence 995 89999999999999999999999974 568999999999877753 2334566778876654332 2
Q ss_pred ccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCC-CCCCEEEEEeCCCCCCCc
Q 020528 239 DVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE-NAGKLIVVVFPSFGERYL 306 (325)
Q Consensus 239 ~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~-~~~~~vv~i~t~~g~~~~ 306 (325)
.++..+..+.|+|+|++++++++++ +|+++||+||+++|+++++.+++. .++++||+++|++|.|++
T Consensus 280 l~~~~g~~~~V~d~e~~~a~~~l~~-~Gi~vepssa~a~Aa~~~l~~~g~i~~~~~Vv~~~TG~glK~~ 347 (347)
T PRK08329 280 LEESNGFCISVGEEETRAALHWLRR-MGFLVEPTSAVALAAYWKLLEEGLIEGGSKVLLPLSGSGLKNL 347 (347)
T ss_pred HHHhCCEEEEECHHHHHHHHHHHHh-cCceECccHHHHHHHHHHHHHhCCCCCCCeEEEEeCCCCccCC
Confidence 2345677999999999999999986 799999999999999999988875 478899999999999975
No 46
>PRK06260 threonine synthase; Validated
Probab=100.00 E-value=2.8e-57 Score=428.40 Aligned_cols=288 Identities=25% Similarity=0.258 Sum_probs=249.3
Q ss_pred HHHhhhhCCCCceecccccCCCCc-eEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHH
Q 020528 10 KDVTELIGKTPLVYLNRIVDGCVA-RIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFM 88 (325)
Q Consensus 10 ~~i~~~~~~TPL~~~~~l~~~~~~-~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~ 88 (325)
+.+++++|+|||+++++|+..+|. +||+|+|++|||||||||++.+++.++.++|. ++||++|+||||+|+|++
T Consensus 59 ~~v~l~~G~TPLv~~~~l~~~~g~~~l~~K~E~~nPTGSfKdRga~~~v~~a~~~g~-----~~vv~aSsGN~g~alA~~ 133 (397)
T PRK06260 59 KIVSLNEGGTPLYRCPNLEKELGVKELYVKHEGANPTGSFKDRGMTVGVTKALELGV-----KTVACASTGNTSASLAAY 133 (397)
T ss_pred CcccCCCCCCCeEEchhhHHHhCCCcEEEEeCCCCCCcCcHHHHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHH
Confidence 368899999999999999877776 89999999999999999999999999999886 689999999999999999
Q ss_pred HHHcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHH
Q 020528 89 AAAKGYRLIITMPAS-MSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPE 167 (325)
Q Consensus 89 a~~~g~~~~i~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~E 167 (325)
|+.+|++|+||+|++ ++..|+.+++.+||+|+.+++ +++++.+.+++++++. ++|+++++ ||.+ ++||+|+++|
T Consensus 134 aa~~G~~~~i~vP~~~~~~~k~~~~~~~GA~vi~v~~--~~~~~~~~a~~~~~~~-g~y~~~~~-np~~-~~G~~t~a~E 208 (397)
T PRK06260 134 AARAGLKCYVLLPAGKVALGKLAQALLHGAKVLEVDG--NFDDALDMVVELAKEG-KIYLLNSI-NPFR-LEGQKTIGFE 208 (397)
T ss_pred HHHcCCcEEEEEeCCCccHHHHHHHHhcCCEEEEECC--cHHHHHHHHHHHHhhC-CEEeecCC-Cchh-hcchhhHHHH
Confidence 999999999999997 789999999999999999996 5889999999988876 78888887 8887 7899999999
Q ss_pred HHhhhCC-CCCEEEEecCCchhHHHHHHHHHhhCC------CcEEEEEecCCCcccc----CCCCC-------CcccccC
Q 020528 168 IWKGTGG-KIDALVSGIGTGGTVTGAGKYLKEHNP------EIKLYGVEPVESAVLS----GGKPG-------PHKIQGI 229 (325)
Q Consensus 168 i~~ql~~-~~D~iv~pvG~Gg~~aGi~~~~k~~~~------~~~vigV~~~~~~~~~----~~~~~-------~~~~~gl 229 (325)
|++|+++ .||+||+|+|+||+++|++++|+++.+ .+|||+||+++++++. .+... .+..+++
T Consensus 209 i~eQl~~~~pd~vvvpvG~Gg~~~Gi~~~~~~l~~~G~i~~~prii~Vq~~g~~~~~~a~~~g~~~~~~~~~~~tia~~i 288 (397)
T PRK06260 209 IADQLGWEVPDRVVLPVGNAGNISAIWKGFKELVELGIIDKLPKMTGIQAEGAAPIVEAIKKGKDEIEPVENPETVATAI 288 (397)
T ss_pred HHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHhcCCcCCCCeEEEEecCCCcHHHHHHHcCCCcccccCCCCceeeee
Confidence 9999976 699999999999999999999999863 3899999999998763 23221 2233444
Q ss_pred CCCCCccc------cccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCC-CCCCEEEEEeCCCC
Q 020528 230 GAGFIPGV------LDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE-NAGKLIVVVFPSFG 302 (325)
Q Consensus 230 ~~~~~~~~------~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~-~~~~~vv~i~t~~g 302 (325)
..+. |.. ..++..+.++.|+|+|+++++++|++++|+++||+||+++++++++.+++. .++++||+++||+|
T Consensus 289 ~i~~-p~~~~~~~~~l~~~~g~~v~V~d~e~~~a~~~la~~eGi~vepssaaalAa~~~l~~~g~i~~~~~VV~i~tG~g 367 (397)
T PRK06260 289 RIGN-PVNAPKALRAIRESGGTAEAVSDEEILDAQKLLARKEGIGVEPASAASVAGLIKLVEEGVIDKDERVVCITTGHL 367 (397)
T ss_pred EeCC-CCCHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHhCCCeeCchHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCc
Confidence 3322 221 123445789999999999999999999999999999999999999988754 46889999999999
Q ss_pred CCCcch
Q 020528 303 ERYLSS 308 (325)
Q Consensus 303 ~~~~~~ 308 (325)
.|+.+.
T Consensus 368 lK~~~~ 373 (397)
T PRK06260 368 LKDPDA 373 (397)
T ss_pred cCchHH
Confidence 998775
No 47
>PRK08246 threonine dehydratase; Provisional
Probab=100.00 E-value=3.3e-57 Score=414.64 Aligned_cols=286 Identities=22% Similarity=0.299 Sum_probs=244.2
Q ss_pred ccchhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHH
Q 020528 5 KSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIG 84 (325)
Q Consensus 5 ~~~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a 84 (325)
...+.++|...+++|||++++.++.. +.+||+|+|++|||||||||++.+++..+.+ + .++||++|+||||+|
T Consensus 10 i~~a~~~i~~~i~~TPl~~~~~l~~~-~~~i~~K~E~~nptGS~K~R~a~~~~~~~~~-~-----~~~vv~aSsGN~g~a 82 (310)
T PRK08246 10 VRAAAQRIAPHIRRTPVLEADGAGFG-PAPVWLKLEHLQHTGSFKARGAFNRLLAAPV-P-----AAGVVAASGGNAGLA 82 (310)
T ss_pred HHHHHHHHhCcCCCCCeeeccccccC-CCEEEEEECCCCCCCCCHHHHHHHHHHhhcc-c-----CCeEEEeCCCHHHHH
Confidence 34577899999999999999998866 6899999999999999999999999988765 2 267999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhch
Q 020528 85 LAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETT 164 (325)
Q Consensus 85 lA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~ 164 (325)
+|++|+.+|++|+||+|+.+++.|+.+++.+||+|+.++. +++++.+.+++++++. +++|++||+|+.+ +.||+++
T Consensus 83 ~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~-i~g~~t~ 158 (310)
T PRK08246 83 VAYAAAALGVPATVFVPETAPPAKVARLRALGAEVVVVGA--EYADALEAAQAFAAET-GALLCHAYDQPEV-LAGAGTL 158 (310)
T ss_pred HHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEeCCCCCChhh-hcchHHH
Confidence 9999999999999999999999999999999999999985 5788888998888876 7899999999987 7899999
Q ss_pred HHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCCCCcc-----cccCCCCCC-
Q 020528 165 GPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKPGPHK-----IQGIGAGFI- 234 (325)
Q Consensus 165 ~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~----~~~~~~~~-----~~gl~~~~~- 234 (325)
++||++|+ +.||+||+|+|+||+++|++.+|+. .+||++|||++++++. .+++.... .++++.+..
T Consensus 159 ~~Ei~eq~-~~~D~iv~~vG~GG~~~Gi~~~~~~---~~~vi~ve~~~~~~~~~s~~~g~~~~~~~~~~~~~~l~~~~~~ 234 (310)
T PRK08246 159 GLEIEEQA-PGVDTVLVAVGGGGLIAGIAAWFEG---RARVVAVEPEGAPTLHAALAAGEPVDVPVSGIAADSLGARRVG 234 (310)
T ss_pred HHHHHHhc-CCCCEEEEecCccHHHHHHHHHhcC---CCEEEEEeeCCChHHHHHHHcCCcccCCCCCceeccccCCCcc
Confidence 99999998 5799999999999999999999974 4899999999998764 34433222 233444332
Q ss_pred --ccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcc
Q 020528 235 --PGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLS 307 (325)
Q Consensus 235 --~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~ 307 (325)
++.+.++.+|+++.|+|+|++++++++++++|+++||++|++++++++.... ..++++||+|+|+ |+.+++
T Consensus 235 ~~~~~~~~~~~~~~~~Vsd~e~~~a~~~l~~~egi~~e~s~aa~lAa~~~~~~~-~~~~~~vv~i~~g-~n~d~~ 307 (310)
T PRK08246 235 EIAFALARAHVVTSVLVSDEAIIAARRALWEELRLAVEPGAATALAALLSGAYV-PAPGERVAVVLCG-ANTDPA 307 (310)
T ss_pred HHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHcCceeehHHHHHHHHHHhCCcc-ccCCCeEEEEECC-CCCChh
Confidence 3345667899999999999999999999999999999999999999764322 1357889999976 555554
No 48
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=100.00 E-value=5.9e-57 Score=416.74 Aligned_cols=286 Identities=27% Similarity=0.297 Sum_probs=248.1
Q ss_pred HHHhhhhCCCCceecccccCCCC-ceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHH
Q 020528 10 KDVTELIGKTPLVYLNRIVDGCV-ARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFM 88 (325)
Q Consensus 10 ~~i~~~~~~TPL~~~~~l~~~~~-~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~ 88 (325)
..+.+++|+|||+++++|+...+ .+||+|+|++|||||||||++.+++..+.++|. ++||++|+||||.|+|++
T Consensus 14 ~~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-----~~vv~~SsGN~g~alA~~ 88 (324)
T cd01563 14 DIVSLGEGNTPLVRAPRLGERLGGKNLYVKDEGLNPTGSFKDRGMTVAVSKAKELGV-----KAVACASTGNTSASLAAY 88 (324)
T ss_pred CcccCCCCCCceeechhhHhhcCCCceEEEecCCCCcccHHHhhHHHHHHHHHHcCC-----CEEEEeCCCHHHHHHHHH
Confidence 46888999999999999987655 799999999999999999999999999999885 679999999999999999
Q ss_pred HHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHHH
Q 020528 89 AAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEI 168 (325)
Q Consensus 89 a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei 168 (325)
|+.+|++|+++||+++++.|+++++.+||+|+.++. +++++.+.+++++++. ++|++||+|+.+ +.||.+++.||
T Consensus 89 a~~~G~~~~ivvp~~~~~~k~~~l~~~GA~Vi~~~~--~~~~~~~~a~~~~~~~--~~~~~~~~n~~~-~~g~~t~~~Ei 163 (324)
T cd01563 89 AARAGIKCVVFLPAGKALGKLAQALAYGATVLAVEG--NFDDALRLVRELAEEN--WIYLSNSLNPYR-LEGQKTIAFEI 163 (324)
T ss_pred HHHcCCceEEEEeCCCCHHHHHHHHHcCCEEEEECC--cHHHHHHHHHHHHHhc--CeeccCCCCcce-ecchhhhHHHH
Confidence 999999999999999999999999999999999986 5788888999988775 788999999998 67999999999
Q ss_pred HhhhCC-CCCEEEEecCCchhHHHHHHHHHhhC------CCcEEEEEecCCCcccc----CCCC-------CCcccccCC
Q 020528 169 WKGTGG-KIDALVSGIGTGGTVTGAGKYLKEHN------PEIKLYGVEPVESAVLS----GGKP-------GPHKIQGIG 230 (325)
Q Consensus 169 ~~ql~~-~~D~iv~pvG~Gg~~aGi~~~~k~~~------~~~~vigV~~~~~~~~~----~~~~-------~~~~~~gl~ 230 (325)
++|+.+ .||+||+|+|+||+++|++.+||... +.+|||+|||.+++++. .+.. ..+.+++++
T Consensus 164 ~~q~~~~~~d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~~~~~vigve~~~~~~~~~~~~~g~~~~~~~~~~~t~~~gl~ 243 (324)
T cd01563 164 AEQLGWEVPDYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVGVQAEGAAPIVRAFKEGKDDIEPVENPETIATAIR 243 (324)
T ss_pred HHHcCCCCCCEEEEecCCcHHHHHHHHHHHHHHhCCccccCCeEEEEecCCCCHHHHHHHcCCCccCcCCCCCceeeeee
Confidence 999963 69999999999999999999999976 57999999999987653 2211 123445665
Q ss_pred CCCCc---c--ccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCC-CCCCEEEEEeCCCCCC
Q 020528 231 AGFIP---G--VLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE-NAGKLIVVVFPSFGER 304 (325)
Q Consensus 231 ~~~~~---~--~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~-~~~~~vv~i~t~~g~~ 304 (325)
.+..+ . .+..++.|+++.|+|+|++++++++++++|+++||+||+++++++++.+++. .++++||+++||+|.|
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~pssa~alaa~~~l~~~~~~~~~~~Vv~v~tg~g~~ 323 (324)
T cd01563 244 IGNPASGPKALRAVRESGGTAVAVSDEEILEAQKLLARTEGIFVEPASAASLAGLKKLREEGIIDKGERVVVVLTGHGLK 323 (324)
T ss_pred cCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhcCCceeCchHHHHHHHHHHHHHcCCCCCCCcEEEEeCCCccC
Confidence 44321 1 1223566899999999999999999999999999999999999999877643 4678999999999987
Q ss_pred C
Q 020528 305 Y 305 (325)
Q Consensus 305 ~ 305 (325)
+
T Consensus 324 ~ 324 (324)
T cd01563 324 D 324 (324)
T ss_pred C
Confidence 4
No 49
>PRK06450 threonine synthase; Validated
Probab=100.00 E-value=1.4e-56 Score=413.51 Aligned_cols=266 Identities=25% Similarity=0.262 Sum_probs=226.4
Q ss_pred HHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHHH
Q 020528 11 DVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAA 90 (325)
Q Consensus 11 ~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~ 90 (325)
.+++++|+|||++.+ +||+|+|++|||||||||++.+++.++.++|. ++|+++|+||+|.|+|++|+
T Consensus 51 ~vslgeG~TPLv~~~--------~l~~K~E~~nPTGSfKDRga~~~i~~a~~~g~-----~~vv~aSsGN~g~slA~~aa 117 (338)
T PRK06450 51 FISLGEGRTPLIKKG--------NIWFKLDFLNPTGSYKDRGSVTLISYLAEKGI-----KQISEDSSGNAGASIAAYGA 117 (338)
T ss_pred CCCCCCCCCCceecC--------CEEEEecCCCCcCCCHHHHHHHHHHHHHHcCC-----CEEEEECCcHHHHHHHHHHH
Confidence 588999999999864 59999999999999999999999999999875 68999999999999999999
Q ss_pred HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHHHHh
Q 020528 91 AKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWK 170 (325)
Q Consensus 91 ~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~ 170 (325)
.+|++|+||||++++..|+.+++.+||+|+.+++ +++++.+. +++. +.+|++++.||.+ ++|++|+++||++
T Consensus 118 ~~G~~~~i~vP~~~~~~k~~~i~~~GA~vi~v~~--~~~~~~~~----a~~~-g~~~~~~~~np~~-ieG~kTia~EI~e 189 (338)
T PRK06450 118 AAGIEVKIFVPETASGGKLKQIESYGAEVVRVRG--SREDVAKA----AENS-GYYYASHVLQPQF-RDGIRTLAYEIAK 189 (338)
T ss_pred HcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHH----HHhc-CeEeccCCCCccH-HHHHHHHHHHHHH
Confidence 9999999999999999999999999999999996 46655443 4444 6788999999987 7899999999999
Q ss_pred hhCC-CCCEEEEecCCchhHHHHHHHHHhhCC------CcEEEEEecCCCcccc----CCCC-----CCcccccCCCCCC
Q 020528 171 GTGG-KIDALVSGIGTGGTVTGAGKYLKEHNP------EIKLYGVEPVESAVLS----GGKP-----GPHKIQGIGAGFI 234 (325)
Q Consensus 171 ql~~-~~D~iv~pvG~Gg~~aGi~~~~k~~~~------~~~vigV~~~~~~~~~----~~~~-----~~~~~~gl~~~~~ 234 (325)
|+++ .||+||+|+|+||+++|++++|+++.+ .+|+|+|||++++++. +..+ ..+..++|..+.
T Consensus 190 ql~~~~pD~vvvpvG~Ggll~Gi~~g~~el~~~G~i~~~prii~Vq~~g~~p~~~a~~~~~~~~~~~~~tia~~l~~~~- 268 (338)
T PRK06450 190 DLDWKIPNYVFIPVSAGTLLLGVYSGFKHLLDSGVISEMPKIVAVQTEQVSPLCAKFKGISYTPPDKVTSIADALVSTR- 268 (338)
T ss_pred HcCCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCccCCCeEEEEeeCCCCHHHHHhcCCCCCCCCCCCcceeeeecCC-
Confidence 9964 599999999999999999999999875 3899999999988764 2211 123345554333
Q ss_pred ccccc------cccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCc
Q 020528 235 PGVLD------VNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYL 306 (325)
Q Consensus 235 ~~~~~------~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~ 306 (325)
|.... ++. +..+.|+|+|+++++++|++ +|+++||+||+++|+++++ ++++||+++|++|.|.+
T Consensus 269 p~~~~~~~~~i~~~-g~~v~V~d~ei~~a~~~La~-~Gi~vepssaaalAa~~~l------~~~~vv~vltG~glK~~ 338 (338)
T PRK06450 269 PFLLDYMVKALSEY-GECIVVSDNEIVEAWKELAK-KGLLVEYSSATVYAAYKKY------SVNDSVLVLTGSGLKVL 338 (338)
T ss_pred CCCHHHHHHHHHhc-CcEEEECHHHHHHHHHHHHH-cCCEEChhHHHHHHHHHHC------CCCCEEEEeCCCCccCC
Confidence 22221 233 78999999999999999987 6999999999999999885 34689999999999864
No 50
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=100.00 E-value=8.1e-56 Score=417.36 Aligned_cols=287 Identities=22% Similarity=0.250 Sum_probs=247.1
Q ss_pred hhCCCCceecccccC--------CCCceEEEEeCCCCC-CCChhhHHHHHHHHH-----HHHhCCCCCCC----------
Q 020528 15 LIGKTPLVYLNRIVD--------GCVARIAAKLEMMEP-CSSVKDRIGYSMIAD-----AEEKGLIRPGE---------- 70 (325)
Q Consensus 15 ~~~~TPL~~~~~l~~--------~~~~~l~~K~E~~np-tGS~K~R~a~~~~~~-----a~~~g~~~~g~---------- 70 (325)
++++|||++++++++ ..+.+||+|+|++|| |||||||++.+++.. +.+.|.+.++.
T Consensus 67 ~~~~TPL~~~~~ls~~~~~~~~~~~~~~v~lKlE~~nP~tGSfKdRGA~~~i~~~~~~~A~~~G~l~~~~~~~~l~e~~~ 146 (431)
T TIGR02035 67 GIIESPLVEIFNMQKELEKKYQQEIPGRLLLKMDSHLPISGSIKARGGIYEVLKHAEELALEAGLLKLDDDYSILAEKKF 146 (431)
T ss_pred CccCCCccchHHHHHHhhhcccCCcCceEEEEecccCCccCCcHHHHHHHHHHHhhHHHHHHcCCCCcCcchhhhcchhh
Confidence 899999999999886 235799999999999 999999999998864 67889887764
Q ss_pred ------eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCC
Q 020528 71 ------SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPN 144 (325)
Q Consensus 71 ------~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~ 144 (325)
++||++|+||||+|+|++|+.+|++|+||||++++..|+++++.|||+|+.+++ +|+++.+.+++++++.++
T Consensus 147 ~~~~~~~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~~~K~~~ir~~GAeVv~~~~--~~~~a~~~A~~la~~~~~ 224 (431)
T TIGR02035 147 KDFFSRYSIAVGSTGNLGLSIGIISAALGFQVTVHMSADAKQWKKDKLRSKGVTVVEYES--DYGVAVEEGRKNADADPM 224 (431)
T ss_pred hhcccCceEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhcCC
Confidence 589999999999999999999999999999999999999999999999999996 689999999999988766
Q ss_pred eEEeCCCCCCcchHhHHhchHHHHHhhhCC--------CCCEEEEecCCchhHHHHHHHHHhh-CCCcEEEEEecCCCcc
Q 020528 145 SYVLQQFENPANPKIHYETTGPEIWKGTGG--------KIDALVSGIGTGGTVTGAGKYLKEH-NPEIKLYGVEPVESAV 215 (325)
Q Consensus 145 ~~~~~~~~n~~~~~~g~~t~~~Ei~~ql~~--------~~D~iv~pvG~Gg~~aGi~~~~k~~-~~~~~vigV~~~~~~~ 215 (325)
+|++++ .|+.+.++||+|+++||++|+.+ .||+|++|+|+||+++|++++||+. .|++|||+|||+++++
T Consensus 225 ~~~~d~-~n~~n~~aG~~T~g~EI~eQl~~~~~~~d~~~pd~V~vp~G~GGli~Gia~~lK~~~~~~vkvi~VEp~~s~~ 303 (431)
T TIGR02035 225 CYFVDD-ENSRNLFLGYAVAASRLKKQFDKKGIVVDKEHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCFFAEPTHSPC 303 (431)
T ss_pred eEECCC-CCcccHHhhHHHHHHHHHHhhhccccccccCCCCEEEEEeCcCHHHHHHHHHHHHhcCCCCEEEEEeeCCCHH
Confidence 788887 45566789999999999999952 4779999999999999999999997 7899999999999986
Q ss_pred cc----CCC-----------CCCcccccCCCCCCcc---ccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHH
Q 020528 216 LS----GGK-----------PGPHKIQGIGAGFIPG---VLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAAT 277 (325)
Q Consensus 216 ~~----~~~-----------~~~~~~~gl~~~~~~~---~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~ 277 (325)
+. .+. ...+.++||+.+.++. .+.+.++|+++.|+|+|+++++++|++++|+++||+||+++
T Consensus 304 ~~~s~~~g~~~~~~~~~~g~~~~T~AdGlav~~p~~~~~~~~~~~vd~vv~VsD~ei~~a~~~L~~~egi~vEpSsaa~l 383 (431)
T TIGR02035 304 MLLGVYTGLHEKISVQDIGIDNITAADGLAVGRPSGFVGRLMEPLLSGIYTVDDYTLYDLLRILAESEGKRLEPSALAGM 383 (431)
T ss_pred HHHHHhcCCCccccccccCCCCCceeccccCCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCCeEcHHHHHHH
Confidence 52 222 1245678888765332 22345789999999999999999999999999999999999
Q ss_pred HHHHHHHhcC-----------C-CCCCEEEEEeCCCCCC
Q 020528 278 AAAIQIAKRP-----------E-NAGKLIVVVFPSFGER 304 (325)
Q Consensus 278 aa~~~~~~~~-----------~-~~~~~vv~i~t~~g~~ 304 (325)
+++.++.+.. + .++.+.|+..|||+..
T Consensus 384 aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~ 422 (431)
T TIGR02035 384 EGPVRLLKYEDSYRYIEGRIGKNLNNATHVVWATGGGMV 422 (431)
T ss_pred HHHHHHHhhhhhHHHHcCccccccCCCeEEEEecCCCCC
Confidence 9999877652 0 1467889999888764
No 51
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=100.00 E-value=4.8e-56 Score=415.70 Aligned_cols=269 Identities=21% Similarity=0.265 Sum_probs=233.2
Q ss_pred hCCCCceecccccCCCC--------ceEEEEeCCCCC-CCChhhHHHHHHHHH-----HHHhCCCCCCC-----------
Q 020528 16 IGKTPLVYLNRIVDGCV--------ARIAAKLEMMEP-CSSVKDRIGYSMIAD-----AEEKGLIRPGE----------- 70 (325)
Q Consensus 16 ~~~TPL~~~~~l~~~~~--------~~l~~K~E~~np-tGS~K~R~a~~~~~~-----a~~~g~~~~g~----------- 70 (325)
+++|||++++.|+..+| .+||+|+|++|| |||||||++.+++.. +.+.|.+.||.
T Consensus 50 ~~~TPLv~~~~ls~~~g~~~~~~~~~~v~~K~E~~nP~tGSfKdRgA~~~i~~l~~~~a~~~G~l~pg~~~~~~~~~~~~ 129 (404)
T cd06447 50 IIESPLLPIPRMKQALEKLYHQPIKGRLLLKADSHLPISGSIKARGGIYEVLKHAEKLALEHGLLTLEDDYSKLASEKFR 129 (404)
T ss_pred ccCCCceehHHHHHHhccccccCcCceEEEEecCCCCCCCChHHHHHHHHHHHHhHHHHHHhCCCCcccchhhhhhhhhh
Confidence 99999999999886543 799999999999 999999999998863 77889888875
Q ss_pred -----eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCe
Q 020528 71 -----SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNS 145 (325)
Q Consensus 71 -----~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~ 145 (325)
++||++||||||+|+|++|+.+|++|+||||.+++..|+++|+.+||+|+.+++ +++++.+.+++++++.+++
T Consensus 130 ~~~~~~~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~~~K~~~ira~GAeVv~v~~--~~~~a~~~a~~la~~~~~~ 207 (404)
T cd06447 130 KLFSQYSIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAKQWKKDKLRSKGVTVVEYET--DYSKAVEEGRKQAAADPMC 207 (404)
T ss_pred hcccCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHHCCCe
Confidence 489999999999999999999999999999999999999999999999999985 6899999999999887667
Q ss_pred EEeCCCCCCcchHhHHhchHHHHHhhhCC---C-----CCEEEEecCCchhHHHHHHHHHhh-CCCcEEEEEecCCCccc
Q 020528 146 YVLQQFENPANPKIHYETTGPEIWKGTGG---K-----IDALVSGIGTGGTVTGAGKYLKEH-NPEIKLYGVEPVESAVL 216 (325)
Q Consensus 146 ~~~~~~~n~~~~~~g~~t~~~Ei~~ql~~---~-----~D~iv~pvG~Gg~~aGi~~~~k~~-~~~~~vigV~~~~~~~~ 216 (325)
+|++|++++. .++||+|+++||++|+++ + ||+||+|+|+||+++|++++||+. .|+++||+|||++++.+
T Consensus 208 ~~v~~~n~~~-~iaG~~T~g~EI~eQl~~~~~~vD~~~Pd~VvvpvG~GGli~GIa~~lK~~~~p~~kVigVeP~~ap~~ 286 (404)
T cd06447 208 YFVDDENSRD-LFLGYAVAASRLKAQLAELGIKVDAEHPLFVYLPCGVGGAPGGVAFGLKLIFGDNVHCFFAEPTHSPCM 286 (404)
T ss_pred EeCCCCCchh-HHhhHHHHHHHHHHHhhhccCccccCCCCEEEEecCccHHHHHHHHHHHHhcCCCCEEEEEccCCChHH
Confidence 8899965554 589999999999999952 3 558999999999999999999997 78899999999998765
Q ss_pred c----CCCC-----------CCcccccCCCCCC---ccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHH
Q 020528 217 S----GGKP-----------GPHKIQGIGAGFI---PGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATA 278 (325)
Q Consensus 217 ~----~~~~-----------~~~~~~gl~~~~~---~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~a 278 (325)
. .+.+ ..+.++||+.+.. ++.+.++.+|+++.|+|+|+.+++++|++++|+++||+||++++
T Consensus 287 ~~s~~ag~~~~~~~~~~g~~~~TiadGl~~~~p~~~~~~~~~~~vd~~v~Vsd~ei~~a~r~La~~~gi~vepSgAa~lA 366 (404)
T cd06447 287 LLGMATGLHDKISVQDIGIDNRTAADGLAVGRPSGLVGKLMEPLLSGIYTVEDDELYRLLAMLKDSENIEVEPSAAAGFT 366 (404)
T ss_pred HHHHHcCCCccccccccCCCccchhhhhcCCCcchhHHHHHHHhCCcEEEECHHHHHHHHHHHHHHcCcEEeHHHHHHHH
Confidence 2 2211 2345677766542 22334578999999999999999999999999999999999999
Q ss_pred HHHHHHhcC
Q 020528 279 AAIQIAKRP 287 (325)
Q Consensus 279 a~~~~~~~~ 287 (325)
+++++.++.
T Consensus 367 Al~~~~~~~ 375 (404)
T cd06447 367 GPAQVLSEA 375 (404)
T ss_pred HHHHHHHhh
Confidence 999987653
No 52
>PRK06381 threonine synthase; Validated
Probab=100.00 E-value=5.2e-56 Score=409.36 Aligned_cols=280 Identities=23% Similarity=0.287 Sum_probs=236.8
Q ss_pred hhhhCCCCceecccccCCCC-ceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHHHH
Q 020528 13 TELIGKTPLVYLNRIVDGCV-ARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAA 91 (325)
Q Consensus 13 ~~~~~~TPL~~~~~l~~~~~-~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~ 91 (325)
...+|+|||+++++|+..+| .+||+|+|++|||||||||++.+++..++++|. ++||++|+||||+|+|++|+.
T Consensus 10 ~~~~g~TPL~~~~~l~~~~G~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-----~~lv~aSsGN~g~alA~~aa~ 84 (319)
T PRK06381 10 EKPPGGTPLLRARKLEEELGLRKIYLKFEGANPTGTQKDRIAEAHVRRAMRLGY-----SGITVGTCGNYGASIAYFARL 84 (319)
T ss_pred cccCCCCceeEhHhhHHhcCCceEEEEecCCCCccCcHHHHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHHHH
Confidence 35689999999999987777 699999999999999999999999999999986 679999999999999999999
Q ss_pred cCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCC-CCcchHhHHhchHHHHHh
Q 020528 92 KGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFE-NPANPKIHYETTGPEIWK 170 (325)
Q Consensus 92 ~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-n~~~~~~g~~t~~~Ei~~ 170 (325)
+|++|+||||...+..|+++++.+||+|+.+++ +++++.+.+++++++. ++|++++++ |+...+.||+++++||++
T Consensus 85 ~G~~~~ivvp~~~~~~~~~~l~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~~n~~~~~~G~~t~a~Ei~~ 161 (319)
T PRK06381 85 YGLKAVIFIPRSYSNSRVKEMEKYGAEIIYVDG--KYEEAVERSRKFAKEN-GIYDANPGSVNSVVDIEAYSAIAYEIYE 161 (319)
T ss_pred cCCcEEEEECCCCCHHHHHHHHHcCCEEEEcCC--CHHHHHHHHHHHHHHc-CcEecCCCCCCcchHhhhHHHHHHHHHH
Confidence 999999999999999999999999999999996 4788889999988775 788888886 663237899999999999
Q ss_pred hhCCCCCEEEEecCCchhHHHHHHHHHhh------CCCcEEEEEecCCCcccc----CCCCC--C---ccccc--CCCCC
Q 020528 171 GTGGKIDALVSGIGTGGTVTGAGKYLKEH------NPEIKLYGVEPVESAVLS----GGKPG--P---HKIQG--IGAGF 233 (325)
Q Consensus 171 ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~------~~~~~vigV~~~~~~~~~----~~~~~--~---~~~~g--l~~~~ 233 (325)
|++..||+||+|+|+||+++|++++||+. .|.+||++|++.+++++. .+... . ..+.. +..+.
T Consensus 162 ql~~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~ 241 (319)
T PRK06381 162 ALGDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIGVSTSGGNQIVESFKRGSSEVVDLEVDEIRETAVNEPL 241 (319)
T ss_pred HhCCCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEEEeeCCCCHHHHHHHcCCCcccCCCcchhhhcccCCCc
Confidence 99667999999999999999999999998 799999999999986553 22211 0 01111 11111
Q ss_pred C-----c----cccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCC
Q 020528 234 I-----P----GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSF 301 (325)
Q Consensus 234 ~-----~----~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~ 301 (325)
. . ..+..++.++.+.|+|+|+++++++|++++|+++||++|+++|+++++.+++. .+++||+++|++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~g~~~~v~d~e~~~a~~~la~~egi~~epssa~alaa~~~~~~~~~-~~~~vv~i~tGg 317 (319)
T PRK06381 242 VSYRSFDGDNALEAIYDSHGYAFGFSDDEMVKYAELLRRMEGLNALPASASALAALVKYLKKNG-VNDNVVAVITGR 317 (319)
T ss_pred ccccCCCHHHHHHHHHHcCCEEEEECHHHHHHHHHHHHHhCCcccCchHHHHHHHHHHHHHcCC-CCCcEEEEecCC
Confidence 0 0 01223556789999999999999999999999999999999999999987754 247899999764
No 53
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=100.00 E-value=4e-56 Score=397.91 Aligned_cols=290 Identities=22% Similarity=0.248 Sum_probs=257.8
Q ss_pred hhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHH
Q 020528 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAF 87 (325)
Q Consensus 8 ~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~ 87 (325)
.+.++..++-.|||.+.-.||+..|.++|+|+|++||+||||.||+.+++.+.-++++ ..+|+++|.||||.|+|+
T Consensus 56 ~~~~i~~~~~~TPl~~s~~lS~~~g~~vyLK~E~lQpsgSFK~RGa~~~~~kla~~~~----~~gViasSaGNha~a~Ay 131 (457)
T KOG1250|consen 56 AHFKIYPVIVETPLLKSVALSKKAGMPVYLKREDLQPSGSFKIRGAGNALQKLAKQQK----KAGVIASSAGNHAQAAAY 131 (457)
T ss_pred hhhccccceecccchhhhhhhhhcCCceEEEehhcccccceehhhHHHHHHHHHHhhh----cCceEEecCccHHHHHHH
Confidence 4566778888999999888998889999999999999999999999999998777664 267999999999999999
Q ss_pred HHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHH
Q 020528 88 MAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPE 167 (325)
Q Consensus 88 ~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~E 167 (325)
+|+++|+|++|+||..+|.-|.+.++.+||+|+..+. +++++...+.++++++ ++.|++||++|+. ++|++|++.|
T Consensus 132 aa~~LgipaTIVmP~~tp~~kiq~~~nlGA~Vil~G~--~~deAk~~a~~lAke~-gl~yI~pfDhP~I-~aGqgTig~E 207 (457)
T KOG1250|consen 132 AARKLGIPATIVMPVATPLMKIQRCRNLGATVILSGE--DWDEAKAFAKRLAKEN-GLTYIPPFDHPDI-WAGQGTIGLE 207 (457)
T ss_pred HHHhcCCceEEEecCCChHHHHHHHhccCCEEEEecc--cHHHHHHHHHHHHHhc-CceecCCCCCchh-hcCcchHHHH
Confidence 9999999999999999999999999999999999984 7999999999999998 8999999999997 7999999999
Q ss_pred HHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCCC-----CcccccCCCCCC---c
Q 020528 168 IWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLS----GGKPG-----PHKIQGIGAGFI---P 235 (325)
Q Consensus 168 i~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~----~~~~~-----~~~~~gl~~~~~---~ 235 (325)
|++|+...+++|+||||+||+++||+.++|...|+++|||||+++|.++. .|++. .+.++|++...+ .
T Consensus 208 Il~ql~~~~~AI~vpVGGGGLiaGIat~vk~~~p~vkIIGVEt~~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~t 287 (457)
T KOG1250|consen 208 ILEQLKEPDGAIVVPVGGGGLIAGIATGVKRVGPHVKIIGVETEGAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENT 287 (457)
T ss_pred HHHhhcCCCCeEEEecCCchhHHHHHHHHHHhCCCCceEEEeecCcHHHHHHHhcCCeeecccccchhcccccchhhHHH
Confidence 99999666669999999999999999999999999999999999998764 45442 345678876654 3
Q ss_pred cccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcc
Q 020528 236 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLS 307 (325)
Q Consensus 236 ~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~ 307 (325)
..+.+.++|+++.|+|+|+..+++++.+++...+||++|+++|+++.. +....+++++|.+++++ +-+.|
T Consensus 288 f~~a~~~~d~vvvV~~~ei~aaI~~l~edek~vvEpAgaaaLaai~~~-~~~~lk~~~vv~ilsG~-n~~~~ 357 (457)
T KOG1250|consen 288 FELAQKLVDRVVVVEDDEIAAAILRLFEDEKMVVEPAGAAALAAIYSG-KLNHLKGKKVVSILSGG-NIDFD 357 (457)
T ss_pred HHHHHhcCceEEEeccHHHHHHHHHHHHhhhheeccchHHHHHHHHhc-cccccCCceEEeecccC-CCCcc
Confidence 446678999999999999999999999999999999999999999987 44457899999999554 44444
No 54
>PRK05638 threonine synthase; Validated
Probab=100.00 E-value=2.5e-55 Score=420.32 Aligned_cols=283 Identities=21% Similarity=0.234 Sum_probs=240.9
Q ss_pred HHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHHH
Q 020528 11 DVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAA 90 (325)
Q Consensus 11 ~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~ 90 (325)
.+++++|+|||++++ ++..+|.+||+|+|++|||||||||++.+++.++.+.|. ++||++|+||||+|+|++|+
T Consensus 59 ~v~l~~G~TPLv~~~-~~~~~g~~l~~K~E~~nPtGSfKdR~a~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~aa 132 (442)
T PRK05638 59 IISLGEGGTPLIRAR-ISEKLGENVYIKDETRNPTGSFRDRLATVAVSYGLPYAA-----NGFIVASDGNAAASVAAYSA 132 (442)
T ss_pred ccccCCCCCcEEccc-chHHhCCeEEEEeCCCCCCCChHHHHHHHHHHHHHHcCC-----CEEEEeCCChHHHHHHHHHH
Confidence 478899999999984 665567799999999999999999999999999998875 77999999999999999999
Q ss_pred HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHHHHh
Q 020528 91 AKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWK 170 (325)
Q Consensus 91 ~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~ 170 (325)
.+|++|+||||++++..|+.+++.+||+|+.+++ +++++.+.+++++++. ++|++++++||.+ ++||+|+++||++
T Consensus 133 ~~G~~~~i~vp~~~~~~k~~~~~~~GA~vi~v~~--~~~~~~~~a~~~~~~~-~~~~~~~~~np~~-~eG~~t~a~Ei~e 208 (442)
T PRK05638 133 RAGKEAFVVVPRKVDKGKLIQMIAFGAKIIRYGE--SVDEAIEYAEELARLN-GLYNVTPEYNIIG-LEGQKTIAFELWE 208 (442)
T ss_pred HcCCCEEEEEeCCCCHHHHHHHHhcCcEEEEECC--CHHHHHHHHHHHHHhC-CeEecCCCCChhH-hhhHHHHHHHHHH
Confidence 9999999999999999999999999999999985 6889999999988775 7999999999987 7899999999999
Q ss_pred hhCCCCCEEEEecCCchhHHHHHHHHHhhCC------CcEEEEEecCCCcccc----CCC--CCCcccccCCCCCCcc--
Q 020528 171 GTGGKIDALVSGIGTGGTVTGAGKYLKEHNP------EIKLYGVEPVESAVLS----GGK--PGPHKIQGIGAGFIPG-- 236 (325)
Q Consensus 171 ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~------~~~vigV~~~~~~~~~----~~~--~~~~~~~gl~~~~~~~-- 236 (325)
|++ ||+||+|+|+||+++|++++|+++.+ .+||++|||++++++. .+. ...+...++..+..+.
T Consensus 209 q~~--pD~vv~pvG~Gg~~~Gi~~gfkel~~~g~i~~~prii~Vq~~~~~p~~~~~~~~~~~~~~t~a~gl~~~~p~~~~ 286 (442)
T PRK05638 209 EIN--PTHVIVPTGSGSYLYSIYKGFKELLEIGVIEEIPKLIAVQTERCNPIASEILGNKTKCNETKALGLYVKNPVMKE 286 (442)
T ss_pred HHC--cCEEEEeCCchHHHHHHHHHHHHHHhCCcccCCCeEEEEecCCCCHHHHHHhcCCCCCCCceeeeEeeCCCCCHH
Confidence 994 99999999999999999999999876 3799999999998764 222 1223334553332111
Q ss_pred ---ccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCC-CCCCEEEEEeCCCCCCCc
Q 020528 237 ---VLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE-NAGKLIVVVFPSFGERYL 306 (325)
Q Consensus 237 ---~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~-~~~~~vv~i~t~~g~~~~ 306 (325)
...++.-+..+.|+|+++.++++.+++ +|+++||+||+++|+++++.+++. .++++||+++||+|.|+.
T Consensus 287 ~~~~~i~~~~g~~~~v~d~~i~~a~~~l~~-eGi~~epssaaa~Aa~~~~~~~g~i~~~~~Vv~i~tG~g~k~~ 359 (442)
T PRK05638 287 YVSEAIKESGGTAVVVNEEEIMAGEKLLAK-EGIFAELSSAVVMPALLKLGEEGYIEKGDKVVLVVTGSGLKGY 359 (442)
T ss_pred HHHHHHHHhCCEEEEECHHHHHHHHHHHHh-cCceecchHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCCCCC
Confidence 112234466888999888888777755 799999999999999999988764 568899999999999984
No 55
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=100.00 E-value=1.3e-55 Score=415.89 Aligned_cols=307 Identities=22% Similarity=0.218 Sum_probs=252.1
Q ss_pred cchhHHH--hhhhCCCCceecccccCCCC-ceEEEEeCCC-CCCCChhhHHHHHHHHHHHH--hCC--------------
Q 020528 6 SVIAKDV--TELIGKTPLVYLNRIVDGCV-ARIAAKLEMM-EPCSSVKDRIGYSMIADAEE--KGL-------------- 65 (325)
Q Consensus 6 ~~~~~~i--~~~~~~TPL~~~~~l~~~~~-~~l~~K~E~~-nptGS~K~R~a~~~~~~a~~--~g~-------------- 65 (325)
..+.+++ ....++|||+++++|++.+| .+||+|+|++ |||||||||++.+.+.++.. .+.
T Consensus 30 ~~a~~~~~~~~~~~~TPL~~~~~l~~~~G~~~v~~K~E~~q~ptgSFK~RG~~~~i~~~~~~~~~~~~~~~~~~~l~~~~ 109 (399)
T PRK08206 30 KKARAFHQSFPGYAPTPLVALPDLAAELGVGSILVKDESYRFGLNAFKALGGAYAVARLLAEKLGLDISELSFEELTSGE 109 (399)
T ss_pred HHHHHHHhcCCCCCCCCCcchHHHHHHhCCCcEEEecccCcCCCCChHHhhHHHHHHHHHHHHhCCCcccCCHHHhhhhH
Confidence 3456777 45889999999999998788 5999999998 59999999999988877653 221
Q ss_pred CC---CCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhC
Q 020528 66 IR---PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKT 142 (325)
Q Consensus 66 ~~---~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~ 142 (325)
+. ++ .+|+++|+||||+|+|++|+.+|++|+||||++++..|+.+++.+||+|+.+++ +++++...+++++++.
T Consensus 110 ~~~~~~~-~~vv~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~~~~k~~~i~~~GA~Vi~v~~--~~~~~~~~a~~~~~~~ 186 (399)
T PRK08206 110 VREKLGD-ITFATATDGNHGRGVAWAAQQLGQKAVIYMPKGSSEERVDAIRALGAECIITDG--NYDDSVRLAAQEAQEN 186 (399)
T ss_pred HHHhccC-CEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHHc
Confidence 00 11 358999999999999999999999999999999999999999999999999995 6889999999988886
Q ss_pred CCeEEeC-----CCCC-CcchHhHHhchHHHHHhhhCC---CCCEEEEecCCchhHHHHHHHHHhhC--CCcEEEEEecC
Q 020528 143 PNSYVLQ-----QFEN-PANPKIHYETTGPEIWKGTGG---KIDALVSGIGTGGTVTGAGKYLKEHN--PEIKLYGVEPV 211 (325)
Q Consensus 143 ~~~~~~~-----~~~n-~~~~~~g~~t~~~Ei~~ql~~---~~D~iv~pvG~Gg~~aGi~~~~k~~~--~~~~vigV~~~ 211 (325)
++++++ ||+| +.+.++||+|+++||++|+.+ .||+||+|+|+||+++|++++||+++ +.+|||+|||+
T Consensus 187 -g~~~v~~~~~~~~~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vvvpvG~GG~~aGi~~~~k~~~~~~~~kii~Vep~ 265 (399)
T PRK08206 187 -GWVVVQDTAWEGYEEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFVVVEPD 265 (399)
T ss_pred -CCEEecCccccCcccccHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCccHHHHHHHHHHHHHcCCCCCEEEEECCC
Confidence 788886 6765 555688999999999999965 59999999999999999999999984 47999999999
Q ss_pred CCcccc----CCCCC------CcccccCCCCC---CccccccccCCeEEEeCHHHHHHHHHHHHH----HcCCeeecchH
Q 020528 212 ESAVLS----GGKPG------PHKIQGIGAGF---IPGVLDVNLLDETVQISSEEAIETAKLLAL----KEGLLVGISSG 274 (325)
Q Consensus 212 ~~~~~~----~~~~~------~~~~~gl~~~~---~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~----~~gi~~~p~sg 274 (325)
+++++. .+.+. .+..+++..+. .++.+.++.+|+++.|+|+|+++++++|++ ++|+++||++|
T Consensus 266 gs~~l~~s~~~g~~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~gi~vepsgA 345 (399)
T PRK08206 266 QADCLYQSAVDGKPVAVTGDMDTIMAGLACGEPNPLAWEILRNCADAFISCPDEVAALGMRILANPLGGDPPIVSGESGA 345 (399)
T ss_pred CCchHHHHHHcCCcEEeCCCCCceeccCCCCCcCHHHHHHHHHhCCEEEEECHHHHHHHHHHHhcccCCCCCeeecchHH
Confidence 998763 23221 23456665443 233445678999999999999999999996 78999999999
Q ss_pred HHHHHHHHHHhc---------CC-CCCCEEEEEeCCCCCCCcchhhhHHHHHHhc
Q 020528 275 AATAAAIQIAKR---------PE-NAGKLIVVVFPSFGERYLSSVLFESVKKEAE 319 (325)
Q Consensus 275 ~a~aa~~~~~~~---------~~-~~~~~vv~i~t~~g~~~~~~~~~~~~~~~~~ 319 (325)
+++|+++++.+. +. .++++||+|+| +|+++.++ |.+++.+++
T Consensus 346 a~lAa~~~~~~~~~~~~~~~~~~i~~~~~Vv~ilt-gG~~d~~~--~~~~~~~~~ 397 (399)
T PRK08206 346 VGLGALAALMTDPDYQELREKLGLDEDSRVLLIST-EGDTDPDR--YREIVWEGK 397 (399)
T ss_pred HHHHHHHHHHhcchhhHHHHhcCCCCCCEEEEEEC-CCCCCHHH--HHHHhcCCC
Confidence 999999976532 22 35789999998 78887775 566654443
No 56
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.5e-55 Score=375.28 Aligned_cols=313 Identities=38% Similarity=0.586 Sum_probs=272.7
Q ss_pred hhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHH
Q 020528 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAF 87 (325)
Q Consensus 8 ~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~ 87 (325)
..+-+...||+|||+++..|+...|++|+.|.|++||.||.|||.|.+++..|++.|++.+| -.|++.|+||+|+++|.
T Consensus 39 ~~~Gv~~~IGnTpliri~sLs~aTGcnIlaK~Ef~NPggS~KDRvAl~iir~Aee~GkL~~g-g~v~EGtaGsTgIslA~ 117 (391)
T KOG1481|consen 39 IVSGVEGAIGNTPLIRINSLSNATGCNILAKAEFLNPGGSVKDRVALYIIRTAEEKGKLVRG-GTVVEGTAGSTGISLAH 117 (391)
T ss_pred ccchhHHhhCCCceEEeeccccccccchhhhhhccCCCCChhhhhHHHHHHHHHHcCCcccC-ceEEecCCCccchhHHH
Confidence 34467788999999999999999999999999999999999999999999999999999998 56999999999999999
Q ss_pred HHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCC--ChhHHHHHHHHHHHhCC------CeEEeCCCCCCcchHh
Q 020528 88 MAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPAR--GMKGAVQKAEEIRDKTP------NSYVLQQFENPANPKI 159 (325)
Q Consensus 88 ~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~--~~~~~~~~a~~~~~~~~------~~~~~~~~~n~~~~~~ 159 (325)
.|+.+|++|+|+||.+.+.+|.+.++.+||+|+.|++.. +...-...|++.+++.+ ..++.+||+|+.||.+
T Consensus 118 v~~a~Gyk~~I~mPddqs~eK~~ile~LGA~V~rV~pa~i~dp~~yvn~Arr~an~~~~~~ngi~g~fAdQFeN~AN~~a 197 (391)
T KOG1481|consen 118 VARALGYKCHIYMPDDQSQEKSDILEFLGAEVHRVPPAPIVDPNHYVNQARRAANETPNASNGIRGWFADQFENVANWLA 197 (391)
T ss_pred hhhhcCcceEEECCChHHHHHHHHHHHhcceeeecCCcCccChhHHHHHHHHHhhhcccccCCcccchhhhhcCHHHHHH
Confidence 999999999999999999999999999999999998632 22344444555444432 2467899999999999
Q ss_pred HHhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCC-cEEEEEecCCCccccC-------------CC----C
Q 020528 160 HYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPE-IKLYGVEPVESAVLSG-------------GK----P 221 (325)
Q Consensus 160 g~~t~~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~-~~vigV~~~~~~~~~~-------------~~----~ 221 (325)
||.++|+|||.|..+.+|.+++.+|+|||++|+.+++|+..+. +.++..+|.++..+.. |. +
T Consensus 198 HyetTGPEIw~QtkGniDaFia~~GTGGTiaGVskyLkek~~~~v~~~laDPpGSGlYnkV~~GVmy~~~e~eG~r~r~q 277 (391)
T KOG1481|consen 198 HYETTGPEIWHQTKGNIDAFIAGTGTGGTIAGVSKYLKEKSDGRVAVFLADPPGSGLYNKVNYGVMYDHIETEGTRRRNQ 277 (391)
T ss_pred HhcCcCcHHHHhhcCCcceEEeccCCCcchHHHHHHHhhcCCCceEEEEeCCCCCchhhhhhhhhhhhhhhhcCcccCCC
Confidence 9999999999999999999999999999999999999999887 8999999999954321 21 2
Q ss_pred CCcccccCCCCCCcccc--ccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeC
Q 020528 222 GPHKIQGIGAGFIPGVL--DVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFP 299 (325)
Q Consensus 222 ~~~~~~gl~~~~~~~~~--~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t 299 (325)
..+..+||+...++.++ ..+++|+.+.|+|+++++..+.|..++|++++.||+....++.++++.. .+|++||+|+|
T Consensus 278 ~dti~EGIGinRiT~Nf~m~~~liD~a~rv~Deqai~Msr~Ll~~dGLFvGsSsa~N~VaAv~vAk~L-gpG~~iVtilC 356 (391)
T KOG1481|consen 278 VDTITEGIGINRITGNFQMAEDLIDDAMRVTDEQAINMSRYLLDNDGLFVGSSSALNCVAAVRVAKTL-GPGHTIVTILC 356 (391)
T ss_pred cchhhhcccccccccccccchhhhhhheecChHHHHHHHHHhhhcCceEecchhhHHHHHHHHHHHhc-CCCceEEEEEe
Confidence 34566888877666554 4678999999999999999999999999999999999999999998875 59999999999
Q ss_pred CCCCCCcchhhhHHHHHHhcCCCC
Q 020528 300 SFGERYLSSVLFESVKKEAESMVF 323 (325)
Q Consensus 300 ~~g~~~~~~~~~~~~~~~~~~~~~ 323 (325)
|+|.|+++. +|++-..++++++|
T Consensus 357 DsG~rh~sk-~~~~~~l~~~~l~p 379 (391)
T KOG1481|consen 357 DSGSRHLSK-LFSESFLESKKLSP 379 (391)
T ss_pred CCcchHHHH-hcCHHHHhhcCCCc
Confidence 999999998 67777777777765
No 57
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=100.00 E-value=2.5e-54 Score=399.84 Aligned_cols=289 Identities=22% Similarity=0.224 Sum_probs=243.6
Q ss_pred hHHHhhhhCCCCceecccccCCCCc-eEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHH
Q 020528 9 AKDVTELIGKTPLVYLNRIVDGCVA-RIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAF 87 (325)
Q Consensus 9 ~~~i~~~~~~TPL~~~~~l~~~~~~-~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~ 87 (325)
...+...+++|||+++++++..++. +||+|+|++|||||||||++.+++.++.++|. .+||++|+||||+|+|+
T Consensus 14 ~~~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~-----~~vv~aSsGN~g~a~A~ 88 (328)
T TIGR00260 14 KDLVDLGEGVTPLFRSPALVANVGIKNLYVLELFHNPTLSFKDRGMAVALTKALELGN-----DTVLCASTGNTGAAAAA 88 (328)
T ss_pred hhhhhhccCCccCccchHHHHhcCCccEEehhhccCCchhhHhhhHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHH
Confidence 3457888999999999998877776 99999999999999999999999999998886 67999999999999999
Q ss_pred HHHHcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCC-CcchHhHHhchH
Q 020528 88 MAAAKGYRLIITMPAS-MSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFEN-PANPKIHYETTG 165 (325)
Q Consensus 88 ~a~~~g~~~~i~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n-~~~~~~g~~t~~ 165 (325)
+|+.+|++|+|++|++ +++.|+++++.+||+|+.+++ +++++.+.+++++++. ++++++++++ +.+ +.||.+++
T Consensus 89 ~a~~~g~~~~v~~p~~~~s~~k~~~~~~~GA~Vi~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~n~~~~~-~~g~~t~~ 164 (328)
T TIGR00260 89 YAGKAGVKVVILYPAGKISLGKLAQALGYNAEVVAIDG--NFDDAQRLVKQLFGDK-EALGLNSVNSIPYR-LEGQKTYA 164 (328)
T ss_pred HhccCCCcEEEEECCCCCCHHHHHHHHhcCcEEEEecC--CHHHHHHHHHHHHhhc-CeeecccCCCCCeE-eeeehhHH
Confidence 9999999999999998 899999999999999999996 6889999999988876 4566665432 665 67899999
Q ss_pred HHHHhhhCC-CCCEEEEecCCchhHHHHHHHHHhhCC-----CcEEEEEecCCCcccc-----CCCCC-----CcccccC
Q 020528 166 PEIWKGTGG-KIDALVSGIGTGGTVTGAGKYLKEHNP-----EIKLYGVEPVESAVLS-----GGKPG-----PHKIQGI 229 (325)
Q Consensus 166 ~Ei~~ql~~-~~D~iv~pvG~Gg~~aGi~~~~k~~~~-----~~~vigV~~~~~~~~~-----~~~~~-----~~~~~gl 229 (325)
+||++|+++ .||+||+|+|+||+++|++.+|++... .+++++|||.+++++. .+++. .+..+++
T Consensus 165 ~Ei~~q~~~~~~d~iv~~vG~GG~~~G~~~~~~~~~~~g~~~~p~v~~Ve~~~~~~~~~~~~~~g~~~~~~~~~t~~~~l 244 (328)
T TIGR00260 165 FEAVEQLGWEAPDKVVVPVPNSGNFGAILKGFKEKKEGGLDSLPVKRGIQAEGAADIVRAFLESGQWEPIEDPATLSTAI 244 (328)
T ss_pred HHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHHHhcCCccCCceeEEEcCCCChHHHHHHcCCCcCcCCCCCccCcce
Confidence 999999974 799999999999999999999998521 2399999999995542 23222 2233444
Q ss_pred CCCCCcccc------ccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCC-CCCCEEEEEeCCCC
Q 020528 230 GAGFIPGVL------DVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE-NAGKLIVVVFPSFG 302 (325)
Q Consensus 230 ~~~~~~~~~------~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~-~~~~~vv~i~t~~g 302 (325)
+.+. |.+. .+.+.|+.+.|+|+|++++++++++++|+++||+||+++++++++.+++. .++++||+++|++|
T Consensus 245 ~~~~-p~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~pssa~alaa~~~~~~~~~~~~~~~vv~i~tG~~ 323 (328)
T TIGR00260 245 DIGN-PANWERALELFRRSNGNAEDVSDEEILEAIKLLAREEGYFVEPHSAVSVAALLKLVEKGTADPAERVVCALTGNG 323 (328)
T ss_pred ecCC-CCCHHHHHHHHHhcCCcEEecCHHHHHHHHHHHHHhcCeeECchHHHHHHHHHHHHhCCCCCCCCcEEEEecCCC
Confidence 3332 3222 23568899999999999999999999999999999999999999887654 46789999999999
Q ss_pred CCCcc
Q 020528 303 ERYLS 307 (325)
Q Consensus 303 ~~~~~ 307 (325)
.|+.|
T Consensus 324 ~k~~~ 328 (328)
T TIGR00260 324 LKDPE 328 (328)
T ss_pred CCCCC
Confidence 98754
No 58
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=100.00 E-value=5e-53 Score=375.69 Aligned_cols=243 Identities=44% Similarity=0.626 Sum_probs=226.0
Q ss_pred CCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEE
Q 020528 19 TPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLII 98 (325)
Q Consensus 19 TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i 98 (325)
|||+++++|+...+.+||+|+|++|||||||||++.+++..+.++|.+ ++ ..||++|+||||.|+|++|+.+|++|++
T Consensus 1 TPl~~~~~l~~~~~~~l~~K~e~~~ptgS~K~R~a~~~l~~a~~~g~~-~~-~~vv~~ssGN~g~alA~~a~~~g~~~~v 78 (244)
T cd00640 1 TPLVRLKRLSKLGGANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKL-PK-GVIIESTGGNTGIALAAAAARLGLKCTI 78 (244)
T ss_pred CCeeEccccccccCCEEEEEecccCCcCCcHHHHHHHHHHHHHHcCCC-CC-CEEEEeCCcHHHHHHHHHHHHcCCCEEE
Confidence 899999999877778999999999999999999999999999998865 33 6799999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHHHHhhhCC-CCC
Q 020528 99 TMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGG-KID 177 (325)
Q Consensus 99 ~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~ql~~-~~D 177 (325)
|+|.+.+..|+++++.+|++|+.+++ +++++.+.+++++++.++++|+++|+|+.+ +.|+.++++||.+|+.+ .||
T Consensus 79 ~~p~~~~~~~~~~~~~~Ga~v~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~-~~g~~~~~~Ei~~q~~~~~~d 155 (244)
T cd00640 79 VMPEGASPEKVAQMRALGAEVVLVPG--DFDDAIALAKELAEEDPGAYYVNQFDNPAN-IAGQGTIGLEILEQLGGQKPD 155 (244)
T ss_pred EECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhCCCCEecCCCCCHHH-HHHHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999999999996 488999999999988558999999999887 68888999999999976 699
Q ss_pred EEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCCCcccccCCCCCCccccccccCCeEEEeCHHHHHHH
Q 020528 178 ALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIET 257 (325)
Q Consensus 178 ~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~v~d~e~~~a 257 (325)
+||+|+|+||+++|++.+||+.+|.+|||+|++ +++.|+|+|++++
T Consensus 156 ~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v~~----------------------------------~~~~v~d~~~~~a 201 (244)
T cd00640 156 AVVVPVGGGGNIAGIARALKELLPNVKVIGVEP----------------------------------EVVTVSDEEALEA 201 (244)
T ss_pred EEEEecCccHHHHHHHHHHHHhCCCCEEEEEee----------------------------------eEEEECHHHHHHH
Confidence 999999999999999999999999999999986 7899999999999
Q ss_pred HHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCC
Q 020528 258 AKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSF 301 (325)
Q Consensus 258 ~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~ 301 (325)
++++++++|+++||+||+++++++++.++. .++++||+++||+
T Consensus 202 ~~~l~~~~gi~~~pssa~~~aa~~~~~~~~-~~~~~vv~v~tg~ 244 (244)
T cd00640 202 IRLLAREEGILVEPSSAAALAAALKLAKKL-GKGKTVVVILTGG 244 (244)
T ss_pred HHHHHHHcCceECHhHHHHHHHHHHHHHhc-CCCCEEEEEeCCC
Confidence 999999999999999999999999988775 3678999999874
No 59
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-54 Score=364.22 Aligned_cols=294 Identities=22% Similarity=0.304 Sum_probs=257.6
Q ss_pred ccccchhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhH
Q 020528 3 EEKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTG 82 (325)
Q Consensus 3 ~~~~~~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g 82 (325)
+.+..+++++.+++-+||++.++.|.+..|.+||+|+|++|.|||||.|||.+.+..+..+.. .+.|++.||||||
T Consensus 10 ~dv~~A~~rik~~ihkTpVlTS~~ln~~~g~~vfFKcE~fQKtGaFKfRGAlNav~~l~~ek~----~kgvithSSGNHa 85 (323)
T KOG1251|consen 10 EDVRAAHQRIKPFIHKTPVLTSENLNEKVGRHVFFKCENFQKTGAFKFRGALNAVSSLKAEKR----AKGVITHSSGNHA 85 (323)
T ss_pred HHHHHHHHHHHhhhccCceechhhHHHHhhhheEeehhhhhhccceehhhhHHHHHHhhHhhh----cCceEeecCCcHH
Confidence 455778999999999999999999988888999999999999999999999999988873332 2689999999999
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHh
Q 020528 83 IGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYE 162 (325)
Q Consensus 83 ~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~ 162 (325)
+|+|++|+.+|+|++|+||.++|..|+..++.||++|+++++ +.+++.+.++++.++. +++.++||++|.. +.|++
T Consensus 86 qAlalaAk~~giPa~IVvP~~AP~~Kv~a~~~Yga~ii~~e~--~~~sRE~va~~ltee~-g~~~i~Py~~p~v-IaGqg 161 (323)
T KOG1251|consen 86 QALALAAKILGIPATIVVPKDAPICKVAATRGYGANIIFCEP--TVESRESVAKDLTEET-GYYLIHPYNHPSV-IAGQG 161 (323)
T ss_pred HHHHHHHHhcCCCeEEEecCCChHHHHHHHHhcCceEEEecC--ccchHHHHHHHHHHhc-CcEEeCCCCCcce-eeccc
Confidence 999999999999999999999999999999999999999997 4567888899999988 7899999999987 89999
Q ss_pred chHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccc----cCCCC----C-CcccccCCC--
Q 020528 163 TTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVL----SGGKP----G-PHKIQGIGA-- 231 (325)
Q Consensus 163 t~~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~----~~~~~----~-~~~~~gl~~-- 231 (325)
|+++|+++|+ +.+|.+|+|+|+||+++|++...+.+.|+++|++|||++.+.- ..|.. . .+.++|...
T Consensus 162 TiA~ElleqV-g~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy~veP~~a~d~~qsf~~g~I~~l~tp~TIADG~r~~~ 240 (323)
T KOG1251|consen 162 TIALELLEQV-GEIDALFVPVGGGGLLSGVALAAKSLKPSIEVYAVEPEAADDGQQSFLKGKIVHLDTPKTIADGVRTSH 240 (323)
T ss_pred hHHHHHHHhh-CccceEEEeecCcchhhHHHHHHhccCCCcEEEEecCcccchHHHHHhcCCeEecCCchhhhhhhhhcc
Confidence 9999999999 5899999999999999999999999999999999999887642 22322 2 234566643
Q ss_pred -CCCccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcch
Q 020528 232 -GFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSS 308 (325)
Q Consensus 232 -~~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~ 308 (325)
+...|++.++++|+++.|+|+|+.++++.+|++..+.+||+++.++|+++..-.+ ...+++.+|+ +|||.++..
T Consensus 241 lG~~t~pIir~~vddi~Tv~e~Ei~~~lk~~~ermK~~vEPTa~lgfAavl~~k~~--~~~K~igIiL-sGGNVD~~~ 315 (323)
T KOG1251|consen 241 LGPLTWPIIRDLVDDILTVSEDEIKEALKLIWERMKVVVEPTAALGFAAVLSHKFA--LNIKRIGIIL-SGGNVDLNS 315 (323)
T ss_pred ccccchHHHHHHhhhheeecHHHHHHHHHHHHHHHheeeccchhHHHHHHHhhhHH--hccCceEEEE-eCCcccccc
Confidence 3457788889999999999999999999999999999999999999999865333 3478899998 577876654
No 60
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=100.00 E-value=4e-53 Score=395.74 Aligned_cols=294 Identities=25% Similarity=0.252 Sum_probs=231.5
Q ss_pred hhHHHhhhhC-CCCceecccccCCC-CceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEe-cCCChhHHH
Q 020528 8 IAKDVTELIG-KTPLVYLNRIVDGC-VARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIE-PTSGNTGIG 84 (325)
Q Consensus 8 ~~~~i~~~~~-~TPL~~~~~l~~~~-~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~-~ssGN~g~a 84 (325)
+++...++++ +|||+++++|+..+ +.+||+|+|++|||||||||.+...+..+.++|. ..+|+ +|+||||+|
T Consensus 23 ~~~~~~~~~~~~TPL~~l~~l~~~~g~~~l~~K~E~~nptgS~K~R~a~~~~~~a~~~g~-----~~vv~~~ssGN~g~a 97 (365)
T cd06446 23 LRELYKDYVGRPTPLYRAKRLSEYLGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK-----KRVIAETGAGQHGVA 97 (365)
T ss_pred HHHHhhccCCCCCCceehHHHHHhhCCceEEEEeccCCCccchhHHHHHHHHHHHHHcCC-----CeEEEecCchHHHHH
Confidence 3444455554 89999999998766 5799999999999999999999999999999886 34454 789999999
Q ss_pred HHHHHHHcCCeEEEEecCCCC---HHHHHHHHHcCCEEEEeCCC-CChhHHHHHHHHH-HHhC-CCeEEeCCCC----CC
Q 020528 85 LAFMAAAKGYRLIITMPASMS---LERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEI-RDKT-PNSYVLQQFE----NP 154 (325)
Q Consensus 85 lA~~a~~~g~~~~i~~p~~~~---~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~-~~~~-~~~~~~~~~~----n~ 154 (325)
+|++|+.+|++|+||+|...+ ..++.+++.+||+|+.++.. ..++++...+.+. .++. ..+|+++++. ++
T Consensus 98 lA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~~~~GAeV~~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~~~~~~~~~ 177 (365)
T cd06446 98 TATACALFGLECEIYMGAVDVERQPLNVFRMELLGAEVVPVPSGSGTLKDAISEAIRDWVTNVEDTHYLLGSVVGPHPYP 177 (365)
T ss_pred HHHHHHHhCCCeEEEEcCCccccccchHHHHHHCCCEEEEeCCCCCcHHHHHHHHHHHHHhccCCceEecccccCCCCch
Confidence 999999999999999998643 36788999999999999863 2356665555444 3332 2344444331 23
Q ss_pred cchHhHHhchHHHHHhhhCC----CCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCC--------CC-
Q 020528 155 ANPKIHYETTGPEIWKGTGG----KIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGG--------KP- 221 (325)
Q Consensus 155 ~~~~~g~~t~~~Ei~~ql~~----~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~--------~~- 221 (325)
.++++|++++++||++|+.+ .||+||+|+|+||+++|++++++. .+++|||+|||.+++.+... ..
T Consensus 178 ~~~~ag~~t~~~EI~~Q~~~~~~~~~D~vv~~vG~GGt~~Gi~~g~~~-~~~~~vigVep~gs~~~~~~~~~~~~~g~~~ 256 (365)
T cd06446 178 NMVRDFQSVIGEEAKKQILEKEGELPDVVIACVGGGSNAAGLFYPFIN-DKDVKLIGVEAGGCGLETGGHAAYLFGGTAG 256 (365)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHh-CCCceEEEEcCCCCccccccceeeccCCCcc
Confidence 35688999999999999852 699999999999999999998887 56899999999998876421 11
Q ss_pred -------------------CCcccccCCCCC-Ccc--ccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHH
Q 020528 222 -------------------GPHKIQGIGAGF-IPG--VLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAA 279 (325)
Q Consensus 222 -------------------~~~~~~gl~~~~-~~~--~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa 279 (325)
..+.+++++.+. .|. .+..+.+|+.+.|+|+|++++++++++++|+++||+||+++++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~r~la~~eGi~~epssgaalAa 336 (365)
T cd06446 257 VLHGLKMYTLQDEDGQIVPPHSISAGLDYPGVGPEHAYLKDSGRVEYVAVTDEEALEAFKLLARTEGIIPALESSHAIAY 336 (365)
T ss_pred eecchhhhccccccCCCCCcccccccccCCCCCHHHHHHHHhCCceEEEeChHHHHHHHHHHHHhcCceeCccchHHHHH
Confidence 011223443221 121 1334568999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCEEEEEeCCCCCCCcch
Q 020528 280 AIQIAKRPENAGKLIVVVFPSFGERYLSS 308 (325)
Q Consensus 280 ~~~~~~~~~~~~~~vv~i~t~~g~~~~~~ 308 (325)
++++.++. .++++||+|+||+|+||+++
T Consensus 337 ~~~~~~~~-~~~~~Vv~i~~g~G~k~~~~ 364 (365)
T cd06446 337 AIKLAKKL-GKEKVIVVNLSGRGDKDLQT 364 (365)
T ss_pred HHHHHHhc-CCCCeEEEEeCCCCcccccc
Confidence 99988765 36789999999999999986
No 61
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=8.6e-53 Score=393.57 Aligned_cols=294 Identities=25% Similarity=0.253 Sum_probs=235.1
Q ss_pred HHHhhhhC-CCCceecccccCCC-CceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHH
Q 020528 10 KDVTELIG-KTPLVYLNRIVDGC-VARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAF 87 (325)
Q Consensus 10 ~~i~~~~~-~TPL~~~~~l~~~~-~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~ 87 (325)
..+..++| +|||+++++|++.+ +++||+|+|++|||||||+|.+..++..+++.|+ ...|+++|+||||+|+|+
T Consensus 53 ~~~~~~~g~pTPL~~~~~Ls~~~Gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~G~----~~vI~etgsGnhG~A~A~ 128 (402)
T PRK13028 53 YLLKHYVGRPTPLYHAKRLSEELGGAQIYLKREDLNHTGAHKINNCLGQALLAKRMGK----KRLIAETGAGQHGVATAT 128 (402)
T ss_pred HHHHHhCCCCCCeeehHHhHhhcCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHcCC----CeEEEecCcHHHHHHHHH
Confidence 44456777 69999999999877 5799999999999999999999999999999886 245667999999999999
Q ss_pred HHHHcCCeEEEEecCCCCH---HHHHHHHHcCCEEEEeCC-CCChhHHHHHHHH-HHHhCCCeEEeC-CCC----CCcch
Q 020528 88 MAAAKGYRLIITMPASMSL---ERRMVLLAFGAELVLTDP-ARGMKGAVQKAEE-IRDKTPNSYVLQ-QFE----NPANP 157 (325)
Q Consensus 88 ~a~~~g~~~~i~~p~~~~~---~~~~~~~~~Ga~v~~~~~-~~~~~~~~~~a~~-~~~~~~~~~~~~-~~~----n~~~~ 157 (325)
+|+++|++|+||||+.... .++.+|+.+||+|+.++. ..+++++.+.+.+ +.++.++.+|+. +.. +|.++
T Consensus 129 aaa~~Gl~~~I~m~~~d~~~q~~nv~~mr~~GAeVi~v~~g~~~~~~a~~~a~~~~~~~~~~~~y~~~s~~gp~p~p~~v 208 (402)
T PRK13028 129 AAALFGLECEIYMGEVDIERQHPNVFRMKLLGAEVVPVTRGGRTLKEAVDSAFEDYLKDPDNTHYAIGSVVGPHPFPMMV 208 (402)
T ss_pred HHHHcCCCEEEEECCCcchhhHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHhcCCcEEEecCcCCCCCcHHHH
Confidence 9999999999999986333 568899999999999984 3468888888855 444433566663 221 13344
Q ss_pred HhHHhchHHHHHhhhC----CCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCC--------CccccCCCCC---
Q 020528 158 KIHYETTGPEIWKGTG----GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVE--------SAVLSGGKPG--- 222 (325)
Q Consensus 158 ~~g~~t~~~Ei~~ql~----~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~--------~~~~~~~~~~--- 222 (325)
..||++++.|+.+|+. ..||+||+|+|+||+++|++.+|++ .|++|||||||.+ ++++..+.+.
T Consensus 209 ~~~q~tig~Ei~~Q~~~~~g~~pD~vV~~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~~~~~~~~aa~l~~g~~g~~~ 287 (402)
T PRK13028 209 RDFQSVIGEEAREQFLEMTGRLPDAVVACVGGGSNAIGLFSAFLD-DESVRLVGVEPAGRGLDLGEHAATLTLGKPGVIH 287 (402)
T ss_pred HHHhHHHHHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHHHh-CCCceEEEEecCCCCcccccccccccCCCcceec
Confidence 5699999999999973 3699999999999999999999986 4899999999999 6666554431
Q ss_pred -----------------CcccccCCCCCC-ccc--cccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHH
Q 020528 223 -----------------PHKIQGIGAGFI-PGV--LDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQ 282 (325)
Q Consensus 223 -----------------~~~~~gl~~~~~-~~~--~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~ 282 (325)
.+...+|..+.+ |.. +.....++.+.|+|+|+++++++|+++|||+++++||+++|++++
T Consensus 288 g~~~~~l~~~~g~~~~~~sia~gl~~~~vgp~~~~l~~~~~~~~v~VtD~eal~a~~~La~~eGIi~~~~sa~alA~a~~ 367 (402)
T PRK13028 288 GFKSYVLQDEDGEPAPVHSIAAGLDYPGVGPEHAYLKDIGRVEYVTATDEEALDAFFLLSRTEGIIPALESSHAVAYAIK 367 (402)
T ss_pred ccceeeccccCCCcCCccceeccccCCCCCHHHHHHHHhcCcEEEEECHHHHHHHHHHHHHhcCCeeccHHHHHHHHHHH
Confidence 112234432221 222 223445789999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCEEEEEeCCCCCCCcchh
Q 020528 283 IAKRPENAGKLIVVVFPSFGERYLSSV 309 (325)
Q Consensus 283 ~~~~~~~~~~~vv~i~t~~g~~~~~~~ 309 (325)
++++. .++++||+++||+|+||++++
T Consensus 368 ~a~~l-~~~~~VVv~lsG~G~kd~~~~ 393 (402)
T PRK13028 368 LAPEL-SKDETILVNLSGRGDKDIDYV 393 (402)
T ss_pred hhhhc-CCCCeEEEEECCCCccCHHHH
Confidence 87653 468899999999999999873
No 62
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=100.00 E-value=1.9e-52 Score=390.64 Aligned_cols=293 Identities=25% Similarity=0.307 Sum_probs=230.7
Q ss_pred HHHhhhhCC-CCceecccccCCC-CceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHH
Q 020528 10 KDVTELIGK-TPLVYLNRIVDGC-VARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAF 87 (325)
Q Consensus 10 ~~i~~~~~~-TPL~~~~~l~~~~-~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~ 87 (325)
..+.+++|+ |||+++++|++.+ +++||+|+|++|||||||+|++...+..+++.|+ .+.|+++|+||||.|+|+
T Consensus 49 ~~~~~~~grpTPL~~~~~Ls~~~gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~Gk----~~vIaetgaGnhG~A~A~ 124 (397)
T PRK04346 49 YLLKNYVGRPTPLYFAERLSEHLGGAKIYLKREDLNHTGAHKINNVLGQALLAKRMGK----KRIIAETGAGQHGVATAT 124 (397)
T ss_pred HHHHHhcCCCCCceEhHHHHHHcCCCeEEEEECCCCCccchHHHHHHHHHHHHHHcCC----CeEEEecCcHHHHHHHHH
Confidence 444577884 9999999999877 5899999999999999999999999999999886 245666899999999999
Q ss_pred HHHHcCCeEEEEecCC-CC--HHHHHHHHHcCCEEEEeCC-CCChhHHHHHHHH-HHHhCCCeEEe-CCCCC----Ccch
Q 020528 88 MAAAKGYRLIITMPAS-MS--LERRMVLLAFGAELVLTDP-ARGMKGAVQKAEE-IRDKTPNSYVL-QQFEN----PANP 157 (325)
Q Consensus 88 ~a~~~g~~~~i~~p~~-~~--~~~~~~~~~~Ga~v~~~~~-~~~~~~~~~~a~~-~~~~~~~~~~~-~~~~n----~~~~ 157 (325)
+|+++|++|+||||+. .+ ..++.+|+.+||+|+.++. ..+++++.+.+.+ +.++.++.+|+ .++.+ |.+.
T Consensus 125 ~aa~~Gl~c~I~mp~~d~~rq~~nv~~m~~lGA~Vv~v~~g~~~l~da~~ea~~~~~~~~~~~~y~~gs~~gphp~p~~v 204 (397)
T PRK04346 125 AAALLGLECVIYMGAEDVERQALNVFRMKLLGAEVVPVTSGSRTLKDAVNEALRDWVTNVEDTHYLIGSVAGPHPYPTMV 204 (397)
T ss_pred HHHHcCCcEEEEecCCchhhhhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEeCCcCCCCCchHHH
Confidence 9999999999999985 33 3678899999999999984 3467777666655 44443344554 33322 2334
Q ss_pred HhHHhchHHHHHhhhC----CCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCc--------cccCCCCC---
Q 020528 158 KIHYETTGPEIWKGTG----GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESA--------VLSGGKPG--- 222 (325)
Q Consensus 158 ~~g~~t~~~Ei~~ql~----~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~--------~~~~~~~~--- 222 (325)
..||++++.||.+|+. ..||+||+|+|+||+++|++.+|++ .|.+|||||||.++. ++..+.+.
T Consensus 205 ~~~q~tig~Ei~eQ~~~~~g~~pD~vVa~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~~~~~~~~~a~l~~g~~g~~~ 283 (397)
T PRK04346 205 RDFQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAGKGLETGKHAATLTKGRPGVLH 283 (397)
T ss_pred HHhcchHHHHHHHHHHHhhCCCCCEEEEecCccHhHHHHHHHHhh-CCCCeEEEEecCCCccccccccchhhcCCeeeec
Confidence 5699999999999973 3699999999999999999999976 889999999999862 23333221
Q ss_pred ----------------Cc-ccccCCCCCC-cc--ccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHH
Q 020528 223 ----------------PH-KIQGIGAGFI-PG--VLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQ 282 (325)
Q Consensus 223 ----------------~~-~~~gl~~~~~-~~--~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~ 282 (325)
.+ ...||..+.+ |. .+.....++.+.|+|+|+++++++|+++|||+++++||+|+|++++
T Consensus 284 g~~~~~~~~~~g~~~~~~sis~gL~~pgvgp~~~~l~~~~~~~~v~VtD~eal~a~~~L~~~eGIi~~~esa~AlA~a~k 363 (397)
T PRK04346 284 GAKTYLLQDEDGQILETHSISAGLDYPGVGPEHAYLKDIGRAEYVSITDDEALEAFQLLSRLEGIIPALESSHALAYALK 363 (397)
T ss_pred cccceecccCCCccCCCceeeccccCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCCEeccHHHHHHHHHHH
Confidence 11 1133322221 21 1233456789999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCEEEEEeCCCCCCCcch
Q 020528 283 IAKRPENAGKLIVVVFPSFGERYLSS 308 (325)
Q Consensus 283 ~~~~~~~~~~~vv~i~t~~g~~~~~~ 308 (325)
+++.. .++++||+++||+|+||+++
T Consensus 364 la~~l-~~~~~Vvv~lsGrG~kd~~~ 388 (397)
T PRK04346 364 LAPTL-GKDQIIVVNLSGRGDKDVFT 388 (397)
T ss_pred hhhhc-CCCCeEEEEeCCCCccCHHH
Confidence 86653 36789999999999999987
No 63
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=100.00 E-value=2e-52 Score=392.76 Aligned_cols=293 Identities=21% Similarity=0.259 Sum_probs=228.9
Q ss_pred HHHhhhhC-CCCceecccccCCCC-ceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHH
Q 020528 10 KDVTELIG-KTPLVYLNRIVDGCV-ARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAF 87 (325)
Q Consensus 10 ~~i~~~~~-~TPL~~~~~l~~~~~-~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~ 87 (325)
+.+..+++ +|||+++++|++.+| .+||+|+|++|||||||||++...+..+++.|. ...|+++|+||||+|+|+
T Consensus 41 ~~~~~~~~~~TPL~~~~~l~~~~g~~~iy~K~E~~nptGS~K~R~a~~~~~~a~~~g~----~~vi~e~ssGN~G~alA~ 116 (385)
T TIGR00263 41 ELLRNYAGRPTPLTFAPNLTEALGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----KRIIAETGAGQHGVATAT 116 (385)
T ss_pred HHHHHhCCCCCCceehHHHHHHhCCCeEEEEeCCCCCCccchHHHHHHHHHHHHHcCC----CEEEEEcCcHHHHHHHHH
Confidence 34445565 899999999987776 799999999999999999999999999988885 245567999999999999
Q ss_pred HHHHcCCeEEEEecCC-CCH--HHHHHHHHcCCEEEEeCCC-CChhHHHHH-HHHHHHhCCCeEEe-CCCCC----Ccch
Q 020528 88 MAAAKGYRLIITMPAS-MSL--ERRMVLLAFGAELVLTDPA-RGMKGAVQK-AEEIRDKTPNSYVL-QQFEN----PANP 157 (325)
Q Consensus 88 ~a~~~g~~~~i~~p~~-~~~--~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~-a~~~~~~~~~~~~~-~~~~n----~~~~ 157 (325)
+|+++|++|+||||+. .+. .++++|+.+||+|+.++.. ..++++.+. ++++.++.++.+|+ +++.| +.++
T Consensus 117 ~a~~~Gl~~~Iv~p~~~~~~~~~~~~~~~~~GA~Vv~v~~~~~~~~~a~~~~~~~~~~~~~~~~y~~~~~~~~~p~~~~~ 196 (385)
T TIGR00263 117 AAALLGLDCEVYMGAEDVERQKPNVFRMELLGAKVIPVTSGSGTLKDAVNEALRDWVTSVDDTHYVLGSAVGPHPFPTMV 196 (385)
T ss_pred HHHHcCCCEEEEecCCcccccchHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCceEEeCCcCCCCCchHHH
Confidence 9999999999999985 443 6788999999999999853 346666444 44445553455555 44443 2344
Q ss_pred HhHHhchHHHHHhhhC----CCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCc--------cccCCCCC---
Q 020528 158 KIHYETTGPEIWKGTG----GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESA--------VLSGGKPG--- 222 (325)
Q Consensus 158 ~~g~~t~~~Ei~~ql~----~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~--------~~~~~~~~--- 222 (325)
..|++|+++||++|+. ..||+||+|+|+||+++|++.++.. .|++|||+|||+++. .+..+.+.
T Consensus 197 ~~~~~t~g~Ei~~Ql~~~~~~~pD~vv~~vG~Gg~~~Gv~~~~~~-~~~~~iigVe~~gs~~~~~~~~~~~~~g~~~~~~ 275 (385)
T TIGR00263 197 RDFQSVIGEEAKEQILEQEGRLPDAVIACVGGGSNAIGIFYAFID-DPSVQLIGVEAGGLGIDTDKHAATLAKGSPGVLH 275 (385)
T ss_pred HHHhhHHHHHHHHHHHhhhCCCCCEEEEEeCchHHHHHHHHHHhh-CCCCeEEEEEeCCCcccchhhhhhhhcCCeeEec
Confidence 6899999999999973 2589999999999999999998865 699999999999862 23333221
Q ss_pred -----------------CcccccCCCCCC-ccc--cccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHH
Q 020528 223 -----------------PHKIQGIGAGFI-PGV--LDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQ 282 (325)
Q Consensus 223 -----------------~~~~~gl~~~~~-~~~--~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~ 282 (325)
.+..+++..... |.. +.....|+++.|+|+|+++++++|+++||++++|+||++++++++
T Consensus 276 ~~~~~~~~~~~~~~~~~~tia~gl~~~~~~p~~~~~~~~~~~~~v~Vsd~e~~~a~~~la~~egi~~~~ssaaalaa~~~ 355 (385)
T TIGR00263 276 GMKTYLLQDEDGQILEAHSVSAGLDYPGVGPEHAYLHETGRATYEAITDDEALEAFKLLSRNEGIIPALESSHALAHLEK 355 (385)
T ss_pred CcccccccCCCCcccccceeeccccCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHhcCCeechHHHHHHHHHHH
Confidence 011233322211 211 233456789999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCEEEEEeCCCCCCCcch
Q 020528 283 IAKRPENAGKLIVVVFPSFGERYLSS 308 (325)
Q Consensus 283 ~~~~~~~~~~~vv~i~t~~g~~~~~~ 308 (325)
++++. .++++||+++||+|++|+++
T Consensus 356 ~~~~l-~~~~~Vv~i~~g~G~~d~~~ 380 (385)
T TIGR00263 356 IAPTL-PKDQIVVVNLSGRGDKDIFT 380 (385)
T ss_pred HHHhC-CCCCeEEEEeCCCCcCCHHH
Confidence 87652 36889999999999999886
No 64
>PLN02618 tryptophan synthase, beta chain
Probab=100.00 E-value=3.4e-52 Score=389.51 Aligned_cols=296 Identities=22% Similarity=0.284 Sum_probs=232.4
Q ss_pred hhHHHhhhhC-CCCceecccccCCC------CceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCCh
Q 020528 8 IAKDVTELIG-KTPLVYLNRIVDGC------VARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGN 80 (325)
Q Consensus 8 ~~~~i~~~~~-~TPL~~~~~l~~~~------~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN 80 (325)
..+.+..++| +|||+++++|++.+ |++||+|+|++|||||||+|++...+..+++.|+ ...|+++|+||
T Consensus 55 ~~~~l~~~vGr~TPL~~~~~Ls~~~g~~~~~g~~IylK~E~lnptGS~K~R~a~~~~l~A~~~g~----~~vIaesgaGN 130 (410)
T PLN02618 55 LAGILKDYVGRETPLYFAERLTEHYKRADGEGPEIYLKREDLNHTGAHKINNAVAQALLAKRLGK----KRIIAETGAGQ 130 (410)
T ss_pred HHHHHHHhcCCCCceeEhhhHHHHhccccCCCCEEEEEeCCCCCccchHHHHHHHHHHHHHHcCC----CEEEEEcCcHH
Confidence 4466678897 89999999999755 4799999999999999999999999998988885 24455667899
Q ss_pred hHHHHHHHHHHcCCeEEEEecCCC---CHHHHHHHHHcCCEEEEeCC-CCChhHHHHHH-HHHHHhCCCeEEe-CCCCC-
Q 020528 81 TGIGLAFMAAAKGYRLIITMPASM---SLERRMVLLAFGAELVLTDP-ARGMKGAVQKA-EEIRDKTPNSYVL-QQFEN- 153 (325)
Q Consensus 81 ~g~alA~~a~~~g~~~~i~~p~~~---~~~~~~~~~~~Ga~v~~~~~-~~~~~~~~~~a-~~~~~~~~~~~~~-~~~~n- 153 (325)
||.|+|++|+++|++|+||||+.. +..|+.+|+.+||+|+.++. ..+++++...+ +++.++.++.+|+ .+..+
T Consensus 131 hG~AlA~aaa~~Gl~~~I~m~~~~~~~~~~nv~~mr~lGA~Vi~v~~g~~~~~dA~~ea~~~~~~~~~~~~yi~gs~~gp 210 (410)
T PLN02618 131 HGVATATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAEVRPVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGP 210 (410)
T ss_pred HHHHHHHHHHHcCCcEEEEEcCCchhhhhhhHHHHHHCCCEEEEEeCCCCCHHHHHHHHHHHHHhccCCCEEEecCcCCC
Confidence 999999999999999999999863 35678899999999999964 34677877444 4566553345555 32221
Q ss_pred ---CcchHhHHhchHHHHHhhh----CCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCC--------ccccC
Q 020528 154 ---PANPKIHYETTGPEIWKGT----GGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVES--------AVLSG 218 (325)
Q Consensus 154 ---~~~~~~g~~t~~~Ei~~ql----~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~--------~~~~~ 218 (325)
+.+...++++++.||.+|+ +..||+||+|+|+||+++|++++|+. .|++|||||||.++ .++..
T Consensus 211 ~P~~~~v~~~q~tig~Ei~~Q~~~~~g~~pD~VV~~VGgGg~~~Gi~~~f~~-~~~v~ligVEa~G~~~~~~~~~a~l~~ 289 (410)
T PLN02618 211 HPYPMMVRDFHSVIGKETRRQAMEKWGGKPDVLVACVGGGSNAMGLFHEFID-DEDVRLIGVEAAGFGLDSGKHAATLTK 289 (410)
T ss_pred CCCHHHHHHhhHHHHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHHh-CCCceEEEEEeCCCcccccccccchhc
Confidence 2233579999999998776 34699999999999999999999975 78999999999997 23333
Q ss_pred CCCC--------------------CcccccCCCCCC-cc--ccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHH
Q 020528 219 GKPG--------------------PHKIQGIGAGFI-PG--VLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGA 275 (325)
Q Consensus 219 ~~~~--------------------~~~~~gl~~~~~-~~--~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~ 275 (325)
+++. .+..+||..+.+ |. .+.....|+.+.|+|+|+++++++|+++|||+++++|++
T Consensus 290 g~~gv~~g~~~~~l~~~~g~~~~~~sia~gl~~pgvgp~~~~l~~~~~~~~v~VtD~Eal~a~~~La~~eGIi~~~sSa~ 369 (410)
T PLN02618 290 GEVGVLHGAMSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDTGRAEYYSVTDEEALEAFQRLSRLEGIIPALETSH 369 (410)
T ss_pred CCcceeccccccccccccCCCCCCcchhhhhcCCCCcHHHHHHHhhcCcEEEEECHHHHHHHHHHHHHHcCceEchhHHH
Confidence 3221 112233332211 22 122335789999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchh
Q 020528 276 ATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSV 309 (325)
Q Consensus 276 a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~ 309 (325)
++++++++++.. .++++||++++|+|+||++++
T Consensus 370 a~a~a~~~a~~l-~~~~~iVv~lsgrG~Kd~~~v 402 (410)
T PLN02618 370 ALAYLEKLCPTL-PDGTKVVVNCSGRGDKDVNTA 402 (410)
T ss_pred HHHHHHHHhHhc-CCCCEEEEEeCCCCcCCHHHH
Confidence 999999998753 468899999999999999984
No 65
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=100.00 E-value=9e-52 Score=389.91 Aligned_cols=297 Identities=24% Similarity=0.282 Sum_probs=231.2
Q ss_pred hhHHHhhhhCCCCceecccccCCCC--ceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEE-ecCCChhHHH
Q 020528 8 IAKDVTELIGKTPLVYLNRIVDGCV--ARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLI-EPTSGNTGIG 84 (325)
Q Consensus 8 ~~~~i~~~~~~TPL~~~~~l~~~~~--~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv-~~ssGN~g~a 84 (325)
+.+.+....++|||+++++|++.++ ++||+|+|++|||||||+|++..++..+.++|. +.++ ++|+||||+|
T Consensus 58 v~~~~~l~g~pTPL~r~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~~~~a~~~G~-----~~~vtetssGN~G~a 132 (419)
T TIGR01415 58 VLKRYAQIGRPTPLIRAKGLEELLGTPARIYYKYESVSPTGSHKINTAIAQAYYAKIEGA-----KRLVTETGAGQWGSA 132 (419)
T ss_pred HHHHHHhcCCCCCeEEccchhhhhCCCceEEEEECCCCCCCCcHHHHHHHHHHHHHHcCC-----CeEEEecCchHHHHH
Confidence 3344444445899999999987665 699999999999999999999999999999997 3455 4688999999
Q ss_pred HHHHHHHcCCeEEEEecCCC---CHHHHHHHHHcCCEEEEeCCCCChhH------------------HHHHHHHHHHhCC
Q 020528 85 LAFMAAAKGYRLIITMPASM---SLERRMVLLAFGAELVLTDPARGMKG------------------AVQKAEEIRDKTP 143 (325)
Q Consensus 85 lA~~a~~~g~~~~i~~p~~~---~~~~~~~~~~~Ga~v~~~~~~~~~~~------------------~~~~a~~~~~~~~ 143 (325)
+|++|+.+|++|+||||+.. ++.|+.+|+.+||+|+.++.+ +++ ++..+.+.+++.+
T Consensus 133 lA~aaa~~Gl~~~V~mp~~s~~~k~~k~~~m~~~GA~Vi~~~~~--~~~~~r~~~~~~p~~~gsl~~ai~~a~e~a~~~~ 210 (419)
T TIGR01415 133 LSLAGALFGLECKVFMVRVSFNQKPYRKYLMELYGAEVIPSPSE--FTEFGREVLKEDPDHPGSLGIAISEAIEYALSDE 210 (419)
T ss_pred HHHHHHHcCCcEEEEEeCCCcccCHHHHHHHHHcCCEEEEECCc--hhhHHHHhhhcccccccchHHHHHHHHHHHHhCC
Confidence 99999999999999999853 668899999999999999963 222 3556677766643
Q ss_pred -CeEEeCCCCCCcchHhHHhchHHHHHhhhCC---CCCEEEEecCCchhHHHHHHHHHhh----CCCcEEEEEecCCCcc
Q 020528 144 -NSYVLQQFENPANPKIHYETTGPEIWKGTGG---KIDALVSGIGTGGTVTGAGKYLKEH----NPEIKLYGVEPVESAV 215 (325)
Q Consensus 144 -~~~~~~~~~n~~~~~~g~~t~~~Ei~~ql~~---~~D~iv~pvG~Gg~~aGi~~~~k~~----~~~~~vigV~~~~~~~ 215 (325)
..|+++++.|+ ...||.++++||++|+.. .||+||+|+|+||+++|++.+|++. .+++|||+|||++++.
T Consensus 211 ~~~y~~~~~~n~--~~~h~~~ig~Ei~~Ql~~~g~~pD~vv~~vG~Gg~~~Gi~~~f~~~~l~g~~~~rviaVep~~~~~ 288 (419)
T TIGR01415 211 DTKYSLGSVLNH--VLLHQTVIGLEAKKQMEEAGEDPDVIIGCVGGGSNFAGLAFPFVADKLSGKIDRRFIAAEPKACPT 288 (419)
T ss_pred CCEEEeCCCCcH--HHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCchHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCChh
Confidence 45666666553 478999999999999953 5999999999999999999888432 2579999999999988
Q ss_pred ccCCCC----------CC-cccccCCCCCCcccc-----------------ccccCCeEEEeCHHHHHHHHHHHHHHcCC
Q 020528 216 LSGGKP----------GP-HKIQGIGAGFIPGVL-----------------DVNLLDETVQISSEEAIETAKLLALKEGL 267 (325)
Q Consensus 216 ~~~~~~----------~~-~~~~gl~~~~~~~~~-----------------~~~~~d~~~~v~d~e~~~a~~~l~~~~gi 267 (325)
+..+.. .+ ....+++...+|... ..+.+++.+.|+|+|+++++++|+++||+
T Consensus 289 l~~g~~~yd~~~~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~~~~~~~~~l~~~~~~~~~~V~d~e~~~a~r~la~~eGi 368 (419)
T TIGR01415 289 LTRGEYRYDFGDTAGLTPLLKMYTLGHDFIPPPIHAGGLRYHGVAPTLSLLVNLGIVEARAYDQEEAFEAAVIFAKTEGI 368 (419)
T ss_pred hhcCcccccccccccCCcceeeeecCCCCCCcceeccccccCCccHHHHHHhhcCceEEEEECHHHHHHHHHHHHHhcCC
Confidence 865431 11 122344444333221 12344578899999999999999999999
Q ss_pred eeecchHHHHHHHHHHHhcCCCCC--CEEEEEeCCCCCCCcchhhhHHHH
Q 020528 268 LVGISSGAATAAAIQIAKRPENAG--KLIVVVFPSFGERYLSSVLFESVK 315 (325)
Q Consensus 268 ~~~p~sg~a~aa~~~~~~~~~~~~--~~vv~i~t~~g~~~~~~~~~~~~~ 315 (325)
+++|+||++++++++++++.+..+ ++||+++|++|+++++ .|+++.
T Consensus 369 ~~epssa~alaaai~~a~~~~~~~~~~vvv~~lsG~G~~d~~--~y~~~~ 416 (419)
T TIGR01415 369 VPAPESAHAIAAAIDEARKCRETGEEKVILFNLSGHGLLDLK--AYAKYL 416 (419)
T ss_pred ccccHHHHHHHHHHHHHHhcCcCCCCeEEEEEcCCCCcCCHH--HHHHHh
Confidence 999999999999999887764223 3566777766776544 476654
No 66
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=100.00 E-value=8.7e-53 Score=395.16 Aligned_cols=287 Identities=16% Similarity=0.085 Sum_probs=238.1
Q ss_pred hhhhCCCCceecccccCCCCc-eEEEEeCC-------CCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHH
Q 020528 13 TELIGKTPLVYLNRIVDGCVA-RIAAKLEM-------MEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIG 84 (325)
Q Consensus 13 ~~~~~~TPL~~~~~l~~~~~~-~l~~K~E~-------~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a 84 (325)
....|.|||+++++|++.+|. +||+|+|+ +|||||||||++.+.+.++.+.|. +.||++|+||||+|
T Consensus 57 ~~~~g~tpl~~~~~L~~~lG~~~v~~K~e~~~~K~E~~npTGSFKdRga~~~i~~a~~~g~-----~~Vv~aSsGN~g~a 131 (398)
T TIGR03844 57 LRTRGGPVTYKSEGLARELGLSDLYITFSGYWPERGAFMRTCSFKELEALPTMQRLKERGG-----KTLVVASAGNTGRA 131 (398)
T ss_pred CCCCCCCceeehHHHHHHhCCCeEEEEecCcccchhccCCccccHHHHHHHHHHHHHHcCC-----CEEEEECCCHHHHH
Confidence 346678999999999987886 99995555 899999999999999999999884 78999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhch
Q 020528 85 LAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETT 164 (325)
Q Consensus 85 lA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~ 164 (325)
+|++|+++|++|+||||++++..+...++.+|++|+.+++ +++++.+.+++++++. +++..++++||.. ++|++|+
T Consensus 132 lA~~aa~~Gi~~~I~vP~~~~~~~~~~~~~~ga~vv~v~g--~~d~a~~~a~~~a~~~-g~~~~~~~~~p~~-ieG~~Ti 207 (398)
T TIGR03844 132 FAEVSAITGQPVILVVPKSSADRLWTTEPASSVLLVTVDG--DYTDAIALADRIATLP-GFVPEGGARNVAR-RDGMGTV 207 (398)
T ss_pred HHHHHHHcCCcEEEEECCChHHHHHHHhhCCcEEEEECCC--CHHHHHHHHHHHHHhC-CccccCCCCCHHH-HhhHHHH
Confidence 9999999999999999998654444445789999999985 6899999999998876 6654556677775 8999999
Q ss_pred HHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhC-------CCcEEEEEecCCCcccc----CCCCC-----------
Q 020528 165 GPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHN-------PEIKLYGVEPVESAVLS----GGKPG----------- 222 (325)
Q Consensus 165 ~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~-------~~~~vigV~~~~~~~~~----~~~~~----------- 222 (325)
++||++|++..||+||+|+|+|+++.|++.+++++. ..+|+++||+++++++. .+...
T Consensus 208 ~~Ei~eql~~~PD~VvvPvG~G~~~~~~~~~~~~l~~~g~i~~~~P~l~~VQ~eg~~p~~~a~~~g~~~~~~~~~~~~~~ 287 (398)
T TIGR03844 208 MLDAAVTIGSLPDHYFQAVGSGTGGIAAWEAAMRLIEDGRFGSKLPRLHLAQNLPFVPMVNAWQEGRREIIPESDMPDAE 287 (398)
T ss_pred HHHHHHHcCCCCCEEEEecCCCHHHHHHHHHHHHHHHcCCccCCCCCEEEEEcCCchHHHHHHHcCCCccccccCCcccc
Confidence 999999996459999999999999999999998853 33789999999998774 33221
Q ss_pred ----CcccccCCCCCCccc-------cccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCC-CC
Q 020528 223 ----PHKIQGIGAGFIPGV-------LDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE-NA 290 (325)
Q Consensus 223 ----~~~~~gl~~~~~~~~-------~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~-~~ 290 (325)
.+..++|..+..+.. ..++..++++.|+|+|+.+++++|++++|+++||+||+++|+++++.+.+. .+
T Consensus 288 ~~~~~t~a~~l~i~~p~~~~~~~~l~air~~~g~~v~Vsd~eI~~A~~~l~~~~gi~vEpa~A~alAal~k~~~~g~i~~ 367 (398)
T TIGR03844 288 NSIEEVYSDVLTNRTPPYGVTGGVFDALIATGGQMYGVSNKEAVSAGKLFEESEGIDILPAAAVAVAALVKAVESGFIGP 367 (398)
T ss_pred ccccceecceeeeCCCCcchHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhhCCccccccHHHHHHHHHHHHHhCCCCC
Confidence 123455544432322 224667899999999999999999999999999999999999999887765 47
Q ss_pred CCEEEEEeCCCCCCCcch
Q 020528 291 GKLIVVVFPSFGERYLSS 308 (325)
Q Consensus 291 ~~~vv~i~t~~g~~~~~~ 308 (325)
+++||+++|++|.|++..
T Consensus 368 ~~~Vv~vlTG~glK~~~~ 385 (398)
T TIGR03844 368 DDDILLNITGGGYKRLRE 385 (398)
T ss_pred CCeEEEEECCcchhhHHh
Confidence 889999999999997654
No 67
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=100.00 E-value=8.3e-52 Score=386.19 Aligned_cols=297 Identities=20% Similarity=0.222 Sum_probs=241.1
Q ss_pred chhHHHhhhhCCCCceecccccCCCC-ceEEEEeCCCCC-CCChhhHHHHHHHHHHHHh----------------CCCCC
Q 020528 7 VIAKDVTELIGKTPLVYLNRIVDGCV-ARIAAKLEMMEP-CSSVKDRIGYSMIADAEEK----------------GLIRP 68 (325)
Q Consensus 7 ~~~~~i~~~~~~TPL~~~~~l~~~~~-~~l~~K~E~~np-tGS~K~R~a~~~~~~a~~~----------------g~~~~ 68 (325)
..++++..+ .+|||++++.|++.+| .+||+|+|++|+ |||||+|++.+.+..+.++ +.+++
T Consensus 12 ~~~~~~~~~-~~TPL~~~~~l~~~~g~~~v~~K~E~~~~~tgSFK~RG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (376)
T TIGR01747 12 AFHKKIPGY-RPTPLCALDHLANLLGLKKILVKDESKRFGLNAFKMLGGSYAIAQYLAEKLHLDIETLSFEHLKNDAIGE 90 (376)
T ss_pred HHHHhCCCC-CCCCCcchHHHHHHhCCCcEEEeeCCCCCCCCChHHHHHHHHHHHHHHHHhCCCcccCCHHHHhhhHHHh
Confidence 345566544 8899999999998888 589999999985 8999999999998877542 12111
Q ss_pred --CCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeE
Q 020528 69 --GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSY 146 (325)
Q Consensus 69 --g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~ 146 (325)
+..+||++|+||||+|+|++|+.+|++|+||||++++..|+.+++.+||+|+.+++ +++++.+.+++++++. +++
T Consensus 91 ~~~~~~vv~aSsGN~g~a~A~~Aa~~G~~~~I~vP~~~~~~k~~~i~~~GAeVi~v~~--~~~~a~~~a~~~~~~~-g~~ 167 (376)
T TIGR01747 91 KMGQATFATATDGNHGRGVAWAAQQLGQKAVVYMPKGSAQERVENILNLGAECTITDM--NYDDTVRLAMQMAQQH-GWV 167 (376)
T ss_pred hcCCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CcE
Confidence 23689999999999999999999999999999999999999999999999999995 6899999999988876 688
Q ss_pred EeC-----CCCCCcc-hHhHHhchHHHHHhhhCC----CCCEEEEecCCchhHHHHHHHHHhhCC--CcEEEEEecCCCc
Q 020528 147 VLQ-----QFENPAN-PKIHYETTGPEIWKGTGG----KIDALVSGIGTGGTVTGAGKYLKEHNP--EIKLYGVEPVESA 214 (325)
Q Consensus 147 ~~~-----~~~n~~~-~~~g~~t~~~Ei~~ql~~----~~D~iv~pvG~Gg~~aGi~~~~k~~~~--~~~vigV~~~~~~ 214 (325)
+++ +|+|..+ .++||+|+++||++|+.. .||+||+|+|+||+++|++.++++..+ .++||+|||++++
T Consensus 168 ~~~~~~~~~~~~~~~~ii~G~~Tia~Ei~eQl~~~~~~~pD~vvvpvG~GGl~~Gi~~~~~~~~~~~~p~vi~Vep~ga~ 247 (376)
T TIGR01747 168 VVQDTAWEGYEKIPTWIMQGYATLADEAVEQLREMGSVTPTHVLLQAGVGSMAGGVLGYFVDVYSENNPHSIVVEPDKAD 247 (376)
T ss_pred EeccccccccccCCchHHHHHHHHHHHHHHHhhccCCCCCCEEEECCchhHHHHHHHHHHHHhcCCCCCEEEEEeeCCCC
Confidence 876 4655222 278999999999999952 799999999999999999999987754 3799999999999
Q ss_pred cccC------CCC------CCcccccCCCCCC---ccccccccCCeEEEeCHHHHHHHHHHHHHHc----CCeeecchHH
Q 020528 215 VLSG------GKP------GPHKIQGIGAGFI---PGVLDVNLLDETVQISSEEAIETAKLLALKE----GLLVGISSGA 275 (325)
Q Consensus 215 ~~~~------~~~------~~~~~~gl~~~~~---~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~----gi~~~p~sg~ 275 (325)
++.. +++ ..+.+++|+.+.+ ++.+.++..+.++.|+|+|+.+++++|++.. ++++||++|+
T Consensus 248 ~~~~s~~~~~g~~~~~~~~~~Tiadgl~~~~~~~~~~~~~~~~~~~~v~V~D~ei~~A~~~L~~~~g~~~~i~~epaga~ 327 (376)
T TIGR01747 248 CLYQSAVKKDGDIVNVGGDMATIMAGLACGEPNPISWEILRNCTSQFISAQDSVAAKGMRVLGAPYGGDPRIISGESGAV 327 (376)
T ss_pred HHHHHHHhcCCCeEEcCCCccccccccccCCcchHHHHHHHhcCCEEEEcCHHHHHHHHHHHhcccCCCCeEeeeCchHH
Confidence 8741 332 1345577766542 4555667889999999999999999999965 5999999999
Q ss_pred HHHHHHHHH---------hcCC-CCCCEEEEEeCCCCCCCcch
Q 020528 276 ATAAAIQIA---------KRPE-NAGKLIVVVFPSFGERYLSS 308 (325)
Q Consensus 276 a~aa~~~~~---------~~~~-~~~~~vv~i~t~~g~~~~~~ 308 (325)
++|++.... +++. .++++||+|+ ++|+.+.+.
T Consensus 328 ~la~l~~~~~~~~~~~~~~~~~~~~~~~vvvi~-t~gn~d~~~ 369 (376)
T TIGR01747 328 GLGLLAAVMYHPQYQSLMEKLQLDKDAVVLVIS-TEGDTDPDH 369 (376)
T ss_pred HHHHHHHHHhCchHHHHHHHcCCCCCCEEEEEe-CCCCCCHHH
Confidence 998888432 2323 3478888888 567776664
No 68
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=100.00 E-value=1e-50 Score=383.26 Aligned_cols=295 Identities=23% Similarity=0.266 Sum_probs=231.5
Q ss_pred hhhhCCCCceecccccCCCC--ceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEe-cCCChhHHHHHHHH
Q 020528 13 TELIGKTPLVYLNRIVDGCV--ARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIE-PTSGNTGIGLAFMA 89 (325)
Q Consensus 13 ~~~~~~TPL~~~~~l~~~~~--~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~-~ssGN~g~alA~~a 89 (325)
....++|||+++++|+..+| .+||+|+|++|||||||+|++..++..+.++|. +.+++ .|+||||.|+|++|
T Consensus 72 ~~~~~~TPL~~~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~a~~a~~~G~-----~~~vtetgsGN~G~alA~aa 146 (427)
T PRK12391 72 YRLWRPTPLIRARRLEKALGTPAKIYYKYEGVSPTGSHKPNTAVAQAYYNKKEGI-----KRLTTETGAGQWGSALALAC 146 (427)
T ss_pred HcccCCCCeeEchhhHhhhCCCceEEEEEcCCCCCCChHHHHHHHHHHHHHHCCC-----CEEEEccCchHHHHHHHHHH
Confidence 34567999999999987665 699999999999999999999999999999997 45565 67899999999999
Q ss_pred HHcCCeEEEEecCC---CCHHHHHHHHHcCCEEEEeCCCCC----------------hhHHHHHHHHHHHhCCCeEEeCC
Q 020528 90 AAKGYRLIITMPAS---MSLERRMVLLAFGAELVLTDPARG----------------MKGAVQKAEEIRDKTPNSYVLQQ 150 (325)
Q Consensus 90 ~~~g~~~~i~~p~~---~~~~~~~~~~~~Ga~v~~~~~~~~----------------~~~~~~~a~~~~~~~~~~~~~~~ 150 (325)
+.+|++|+||||+. .++.|+.+|+.+||+|+.++.+.+ ...++..+.+.+.+.++.+|+..
T Consensus 147 a~~Gl~~~V~mp~~s~~~k~~r~~~mr~~GA~Vi~~~~~~~~~~~~~~~~~~~~~gsl~~ai~~A~e~a~~~~~~~y~~~ 226 (427)
T PRK12391 147 ALFGLECTVFMVRVSYEQKPYRRSLMETYGAEVIPSPSDLTEAGRKILAEDPDHPGSLGIAISEAVEDAAKRPDTKYALG 226 (427)
T ss_pred HHcCCcEEEEEecCCcccCHHHHHHHHHCCCEEEEECCchhhhhhhhhhcCccccccHHHHHHHHHHHHHhCCCcEEEcC
Confidence 99999999999974 467889999999999999985311 11246677777766545455544
Q ss_pred CCCCcchHhHHhchHHHHHhhhC---CCCCEEEEecCCchhHHHHHHHHHh---hC-CCcEEEEEecCCCccccCCCC--
Q 020528 151 FENPANPKIHYETTGPEIWKGTG---GKIDALVSGIGTGGTVTGAGKYLKE---HN-PEIKLYGVEPVESAVLSGGKP-- 221 (325)
Q Consensus 151 ~~n~~~~~~g~~t~~~Ei~~ql~---~~~D~iv~pvG~Gg~~aGi~~~~k~---~~-~~~~vigV~~~~~~~~~~~~~-- 221 (325)
.+ ..+.+.||.++++||++|+. ..||+||+|+|+||+++|++.+|.. .+ +.+|||+|||++++++..+..
T Consensus 227 s~-~~~~~~~~~~ig~Ei~~Ql~~~g~~pD~Vv~~vG~Gg~~aGi~~~f~~~~~~g~~~~riiaVEp~~~~~l~~g~~~~ 305 (427)
T PRK12391 227 SV-LNHVLLHQTVIGLEAKKQLELAGEYPDVVIGCVGGGSNFAGLAFPFLGDKLEGKKDTRFIAVEPAACPTLTKGEYAY 305 (427)
T ss_pred CC-CcHHHhhHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHHHhcCCCCceEEEEeeccchhhccccccc
Confidence 32 33457899999999999995 3699999999999999999987733 34 889999999999998865421
Q ss_pred --------CC-cccccCCCCCCccccc-----------------cccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHH
Q 020528 222 --------GP-HKIQGIGAGFIPGVLD-----------------VNLLDETVQISSEEAIETAKLLALKEGLLVGISSGA 275 (325)
Q Consensus 222 --------~~-~~~~gl~~~~~~~~~~-----------------~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~ 275 (325)
.+ ....+++.+..|..+. ...+++.+.|+|+|+++++++|+++||++++|+||+
T Consensus 306 ~~gd~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~g~~~~~~~l~~~~~~~~~~V~d~e~~~a~~~~a~~eGi~~~pss~~ 385 (427)
T PRK12391 306 DFGDTAGLTPLLKMYTLGHDFVPPPIHAGGLRYHGMAPLVSLLVHEGLIEARAYPQTEVFEAAVLFARTEGIVPAPESSH 385 (427)
T ss_pred cccccccCCccceeEecCCCCCCccccccccccCCchHHHHHHHhcCceEEEEECHHHHHHHHHHHHHHcCCeechHHHH
Confidence 11 1234555544433321 223457899999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC--CCCCEEEEEeCCCCCCCcchhhhHHHH
Q 020528 276 ATAAAIQIAKRPE--NAGKLIVVVFPSFGERYLSSVLFESVK 315 (325)
Q Consensus 276 a~aa~~~~~~~~~--~~~~~vv~i~t~~g~~~~~~~~~~~~~ 315 (325)
+++++++++++.+ .++++||+++||+|+++ ...|+++.
T Consensus 386 alaaa~~~a~~~~~~~~~~~iv~~lsG~G~~d--~~~y~~~l 425 (427)
T PRK12391 386 AIAAAIDEALKAKEEGEEKVILFNLSGHGLLD--LAAYDAYL 425 (427)
T ss_pred HHHHHHHHHHhccccCCCCEEEEEeCCCCCCC--HHHHHHHh
Confidence 9999999887643 34678888887767655 44577765
No 69
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=9.5e-51 Score=399.07 Aligned_cols=295 Identities=21% Similarity=0.253 Sum_probs=233.5
Q ss_pred HHHhhhhC-CCCceecccccCC----CC--ceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhH
Q 020528 10 KDVTELIG-KTPLVYLNRIVDG----CV--ARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTG 82 (325)
Q Consensus 10 ~~i~~~~~-~TPL~~~~~l~~~----~~--~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g 82 (325)
..+..++| +|||+++++|++. +| .+||+|+|++|||||||||++..++..+++.|+ .+.|+++|+||||
T Consensus 317 ~~~~~~iGrpTPL~~~~~Ls~~l~~~~G~g~~IylK~E~lNpTGS~KdR~Al~~i~~A~~~G~----~~~IvetssGNhG 392 (695)
T PRK13802 317 TLNQRYVGRPSPLTEAPRFAERVKEKTGLDARVFLKREDLNHTGAHKINNALGQALLVKRMGK----TRVIAETGAGQHG 392 (695)
T ss_pred HHHHhcCCCCCceeEchhhhhhhHhhcCCCceEEEEEccCCCcCCcHHHHHHHHHHHHHHcCC----CCEEEEECcHHHH
Confidence 34467899 8999999998742 33 799999999999999999999999999999997 2578899999999
Q ss_pred HHHHHHHHHcCCeEEEEecCC---CCHHHHHHHHHcCCEEEEeCC-CCChhHHHHHH-HHHHHhCC-CeEEeCCCCCC--
Q 020528 83 IGLAFMAAAKGYRLIITMPAS---MSLERRMVLLAFGAELVLTDP-ARGMKGAVQKA-EEIRDKTP-NSYVLQQFENP-- 154 (325)
Q Consensus 83 ~alA~~a~~~g~~~~i~~p~~---~~~~~~~~~~~~Ga~v~~~~~-~~~~~~~~~~a-~~~~~~~~-~~~~~~~~~n~-- 154 (325)
+|+|++|+++|++|+||||+. .+..|+.+|+.+||+|+.++. ..+++++.+.+ +++.++.+ .+|+++++.|+
T Consensus 393 ~AlA~aaA~~Gl~c~Ivmp~~~~~~~~~nv~~mr~lGAeVi~v~~g~~~l~~Ai~ea~~~~~~~~~~~~y~i~~~~g~~P 472 (695)
T PRK13802 393 VATATVCAMLGLKCRIYMGQIDARRQALNVARMRMLGAEVVEVTLGDRILKDAINEALRDWVTNVKDTHYLLGTVAGPHP 472 (695)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcccccHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHHHhcCCceEeecccCCCCC
Confidence 999999999999999999985 468899999999999999984 33677776655 44555433 45778888654
Q ss_pred --cchHhHHhchHHHHHhhhCC-----CCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccC---------
Q 020528 155 --ANPKIHYETTGPEIWKGTGG-----KIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSG--------- 218 (325)
Q Consensus 155 --~~~~~g~~t~~~Ei~~ql~~-----~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~--------- 218 (325)
.++.+||+++|.||++|+.. .||+||+|+|+||+++|++++|++ .|.+|+|||||.++.....
T Consensus 473 ~p~~v~agq~tiG~EI~eQ~~~~~g~~~pD~VVa~VGgGg~~~Gi~~~f~~-~~~vkligVE~~g~g~~~g~h~~~~~~g 551 (695)
T PRK13802 473 FPAMVRDFQKIIGEEAKQQLQDWYGIDHPDAICACVGGGSNAIGVMNAFLD-DERVNLYGYEAGGNGPESGKHAIRFAPG 551 (695)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEEcCCchHHHHHHHHHHHh-CCCceEEEEEecCCCccccchhhhhhhc
Confidence 23568999999999999952 699999999999999999999976 6899999999999743221
Q ss_pred -CCCC--------------------CcccccCCCCCC-ccccccccCCeE--EEeCHHHHHHHHHHHHHHcCCeeecchH
Q 020528 219 -GKPG--------------------PHKIQGIGAGFI-PGVLDVNLLDET--VQISSEEAIETAKLLALKEGLLVGISSG 274 (325)
Q Consensus 219 -~~~~--------------------~~~~~gl~~~~~-~~~~~~~~~d~~--~~v~d~e~~~a~~~l~~~~gi~~~p~sg 274 (325)
+.++ .....||.-+-+ |..-..+.++++ +.|+|+|++++++.|+++|||+++|+||
T Consensus 552 ~g~~g~~~g~~~~~~~~~~g~~~~~~sis~gLdy~gvgp~~~~l~~~~rv~~~~vtD~eal~a~~~La~~EGIipa~eS~ 631 (695)
T PRK13802 552 TGELGMFQGAKSYLLENDEGQTLDTYSISAGLDYASVGPEHAWLKDIGRVNYSWATDEEAMNAFKDLCETEGIIPAIESS 631 (695)
T ss_pred cCCccccccceeecccCCCCCccCccccccccCCCCCCchhHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCccccchHH
Confidence 1100 000011110001 111112234555 8999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCC---CCCEEEEEeCCCCCCCcchh
Q 020528 275 AATAAAIQIAKRPEN---AGKLIVVVFPSFGERYLSSV 309 (325)
Q Consensus 275 ~a~aa~~~~~~~~~~---~~~~vv~i~t~~g~~~~~~~ 309 (325)
+|++++++++++... ++++||+++||+|+||++++
T Consensus 632 hAva~a~~~a~~~~~~~~~~~~Vv~~lsg~GdKdl~~~ 669 (695)
T PRK13802 632 HAVAGAYKAAADLKAKGYEHPVMIVNISGRGDKDMNTA 669 (695)
T ss_pred HHHHHHHHHHHhcccccCCCCEEEEEECCCCcCCHHHH
Confidence 999999999875431 25699999999999999984
No 70
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=100.00 E-value=9.4e-51 Score=381.50 Aligned_cols=290 Identities=20% Similarity=0.196 Sum_probs=231.9
Q ss_pred hhCCCCceecccccCCCC-ceEEEEeCCCCC-CCChhhHHHHHHHHHHH--HhCCC--------------C--CCCeEEE
Q 020528 15 LIGKTPLVYLNRIVDGCV-ARIAAKLEMMEP-CSSVKDRIGYSMIADAE--EKGLI--------------R--PGESVLI 74 (325)
Q Consensus 15 ~~~~TPL~~~~~l~~~~~-~~l~~K~E~~np-tGS~K~R~a~~~~~~a~--~~g~~--------------~--~g~~~vv 74 (325)
...+|||++++.|+..+| .+||+|+|++|+ |||||+||+.+.+..+. +.|.. . ....+||
T Consensus 38 ~~~~TPL~~~~~L~~~~g~~~v~lK~E~~q~~tGSFK~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~vv 117 (396)
T TIGR03528 38 GYQPTPLAELDNLAKHLGVGSILVKDESYRFGLNAFKVLGGSYAIGKYLAEKLGKDISELSFEKLKSNEIREKLGDITFV 117 (396)
T ss_pred CCcCCCCcchHHHHHHhCCCcEEEeeCCCCCCcCChHHHHHHHHHHHHHHHHhCCCcccccHHHhhhHHHHhhccCcEEE
Confidence 457899999999998788 699999999985 99999999999998753 23310 0 0123799
Q ss_pred ecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeC-----
Q 020528 75 EPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQ----- 149 (325)
Q Consensus 75 ~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----- 149 (325)
++|+||||+|+|++|+.+|++|+||||++++..|+.+++.+||+|+.++. +++++.+.+++++++. ++++++
T Consensus 118 ~aSsGN~g~alA~~aa~~Gi~~~IvvP~~~~~~K~~~ir~~GAeVi~~~~--~~~~a~~~a~~~a~~~-g~~~v~~~~~~ 194 (396)
T TIGR03528 118 TATDGNHGRGVAWAANQLGQKSVVYMPKGSAQIRLENIRAEGAECTITDL--NYDDAVRLAWKMAQEN-GWVMVQDTAWE 194 (396)
T ss_pred EECccHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-CcEeecccccc
Confidence 99999999999999999999999999999999999999999999999985 6889999999998876 788875
Q ss_pred CCCCCc-chHhHHhchHHHHHhhhC----CCCCEEEEecCCchhHHHHHHHHHhh-CCC-cEEEEEecCCCccccC----
Q 020528 150 QFENPA-NPKIHYETTGPEIWKGTG----GKIDALVSGIGTGGTVTGAGKYLKEH-NPE-IKLYGVEPVESAVLSG---- 218 (325)
Q Consensus 150 ~~~n~~-~~~~g~~t~~~Ei~~ql~----~~~D~iv~pvG~Gg~~aGi~~~~k~~-~~~-~~vigV~~~~~~~~~~---- 218 (325)
+|+|.. ..++||+|+++||++|+. +.||+||+|+|+||+++|++.++++. .+. +|||+|||++++++..
T Consensus 195 ~~~~~~~~~i~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p~vi~Vep~~a~~l~~s~~~ 274 (396)
T TIGR03528 195 GYEKIPTWIMQGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAYGEERPITVIVEPDAADCLYRSAIA 274 (396)
T ss_pred ccccCchHHHHHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHHHHhcCCCCCEEEEEccCCCchHHHHHHh
Confidence 566532 236899999999999995 26999999999999999999999654 344 5999999999987742
Q ss_pred --CCC------CCcccccCCCCC---CccccccccCCeEEEeCHHHHHHHHHHHHH----HcCCeeecchHHHHHHHHHH
Q 020528 219 --GKP------GPHKIQGIGAGF---IPGVLDVNLLDETVQISSEEAIETAKLLAL----KEGLLVGISSGAATAAAIQI 283 (325)
Q Consensus 219 --~~~------~~~~~~gl~~~~---~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~----~~gi~~~p~sg~a~aa~~~~ 283 (325)
+.+ ..+..++++.+. .++.+.++++|+++.|+|+|+.++++++++ ++++++||++|+++|++..+
T Consensus 275 ~~g~~~~~~g~~~Tiadgl~~~~p~~~~~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~~~~~epsga~~~Aalaa~ 354 (396)
T TIGR03528 275 DDGKPHFVTGDMATIMAGLACGEPNTIGWEILRDYASQFISCPDWVAAKGMRILGNPLKGDPRVISGESGAVGTGLLAAV 354 (396)
T ss_pred cCCCEEEeCCCccceecccccCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHhcccCCCCceeecCcHHHHHHHHHHH
Confidence 221 123456665432 233445678999999999999999999998 67999999999999665332
Q ss_pred H---------hcCC-CCCCEEEEEeCCCCCCCcch
Q 020528 284 A---------KRPE-NAGKLIVVVFPSFGERYLSS 308 (325)
Q Consensus 284 ~---------~~~~-~~~~~vv~i~t~~g~~~~~~ 308 (325)
. +++. .++++||+|+| ||+.+.+.
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~vv~i~t-ggn~d~~~ 388 (396)
T TIGR03528 355 MTNPDYKELREKLQLDKNSRVLLIST-EGDTDPDN 388 (396)
T ss_pred HhCchhHHHHHhcCCCCCCEEEEEEC-CCCCCHHH
Confidence 2 2222 35789999995 57766654
No 71
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=100.00 E-value=6.1e-51 Score=373.60 Aligned_cols=277 Identities=21% Similarity=0.230 Sum_probs=223.9
Q ss_pred CCceecccccCCC--CceEEEEeCCCCCC---CChhhHHHHHHHHHHHHhCCCCCCCeEEEec--CCChhHHHHHHHHHH
Q 020528 19 TPLVYLNRIVDGC--VARIAAKLEMMEPC---SSVKDRIGYSMIADAEEKGLIRPGESVLIEP--TSGNTGIGLAFMAAA 91 (325)
Q Consensus 19 TPL~~~~~l~~~~--~~~l~~K~E~~npt---GS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~--ssGN~g~alA~~a~~ 91 (325)
|||+++++|+..+ +.+||+|+|++||+ ||||||++.+++..++++|. +.||++ |+||||+|+|++|+.
T Consensus 1 TPl~~~~~l~~~~g~~~~l~~K~E~~np~gsfgs~K~R~~~~~l~~a~~~g~-----~~vv~~ggs~GN~g~alA~~a~~ 75 (307)
T cd06449 1 TPIQYLPRLSEHLGGKVEIYAKRDDCNSGLAFGGNKIRKLEYLLPDALAKGA-----DTLVTVGGIQSNHTRQVAAVAAK 75 (307)
T ss_pred CcccchhHHHHhhCCCCcEEEecccccCCCCccchHHHHHHHHHHHHHHcCC-----CEEEECCCchhHHHHHHHHHHHH
Confidence 8999999998766 57899999999998 56699999999999999887 678888 579999999999999
Q ss_pred cCCeEEEEecCCCC--------HHHHHHHHHcCCEEEEeCCCCC--hhHHHHHHHHHHHhC-CCeEE-eCCCC-CCcchH
Q 020528 92 KGYRLIITMPASMS--------LERRMVLLAFGAELVLTDPARG--MKGAVQKAEEIRDKT-PNSYV-LQQFE-NPANPK 158 (325)
Q Consensus 92 ~g~~~~i~~p~~~~--------~~~~~~~~~~Ga~v~~~~~~~~--~~~~~~~a~~~~~~~-~~~~~-~~~~~-n~~~~~ 158 (325)
+|++|+||||++.+ ..|+.+++.+||+|+.++.+.+ ...+...+.+..++. +..|+ .+++. |+.+ .
T Consensus 76 ~G~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 154 (307)
T cd06449 76 LGLKCVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLVSAGFDIGIRKSFEEAAEEVEAKGGKPYVIPAGGSEHPLG-G 154 (307)
T ss_pred cCCeEEEEecCCCCcccccccccccHHHHHHCCCEEEEECCcchhhHHHHHHHHHHHHHHcCCceEEecCCCCCCccc-H
Confidence 99999999999876 4689999999999999986421 122333333333333 22344 45553 8887 6
Q ss_pred hHHhchHHHHHhhhCC---CCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCC---CcccccCC--
Q 020528 159 IHYETTGPEIWKGTGG---KIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPG---PHKIQGIG-- 230 (325)
Q Consensus 159 ~g~~t~~~Ei~~ql~~---~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~~---~~~~~gl~-- 230 (325)
.||.++++||++|+.+ .||+||+|+|+||+++|++++||+.+|.+|||+|+|.+++.+...... ...+.+++
T Consensus 155 ~G~~t~~~Ei~~q~~~~~~~~d~vv~~~GtGgt~~G~~~~~~~~~~~~~ii~V~~~~~~~~~~~~~~~~~~~~~~~~g~~ 234 (307)
T cd06449 155 LGYVGFVLEIAQQEEELGFKFDSIVVCSVTGSTHAGLSVGLAALGRQRRVIGIDASAKPEKTKAQVLRIAQAKLAEEGLE 234 (307)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhcCCCCeEEEEEecCchHHHHHHHHHHHHHHHHHcCCC
Confidence 7999999999999854 699999999999999999999999999999999999998765321100 01222222
Q ss_pred CCCCccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeec-chHHHHHHHHHHHhcCC-CCCCEEEEEeCCC
Q 020528 231 AGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGI-SSGAATAAAIQIAKRPE-NAGKLIVVVFPSF 301 (325)
Q Consensus 231 ~~~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p-~sg~a~aa~~~~~~~~~-~~~~~vv~i~t~~ 301 (325)
....+..+..+++|+.+.|+|+|++++++++++++|+++|| +||++++++.++++++. .++++||+|+|+|
T Consensus 235 ~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~~Gi~~ep~ytg~~~aa~~~~~~~~~~~~~~~vv~i~TGG 307 (307)
T cd06449 235 VKEEDVVLDDDYAAPEYGIPNDETIEAIKLCARLEGIITDPVYEGKSMQGMIDLVRNGEFKEGSKVLFIHLGG 307 (307)
T ss_pred CCcccEEEecCcccCCCCCCCHHHHHHHHHHHHHhCCccccchHHHHHHHHHHHHhcCCCCCCCeEEEEeCCC
Confidence 22345566778899999999999999999999999999999 79999999999988754 4578999999875
No 72
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=100.00 E-value=5.2e-51 Score=374.93 Aligned_cols=281 Identities=21% Similarity=0.150 Sum_probs=225.0
Q ss_pred hhCCCCceecccccCCCCceEEEEeCCCCCC--CChhhHHHHHHHHHHHHhCCCCCCCeEEEec--CCChhHHHHHHHHH
Q 020528 15 LIGKTPLVYLNRIVDGCVARIAAKLEMMEPC--SSVKDRIGYSMIADAEEKGLIRPGESVLIEP--TSGNTGIGLAFMAA 90 (325)
Q Consensus 15 ~~~~TPL~~~~~l~~~~~~~l~~K~E~~npt--GS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~--ssGN~g~alA~~a~ 90 (325)
...+|||+++++|+...+.+||+|+|++||| ||||||++.+++..++++|. +.||++ |+||||+|+|++|+
T Consensus 4 ~~~~TPl~~~~~l~~~~g~~l~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~g~-----~~vv~~g~ssGN~g~alA~~a~ 78 (311)
T TIGR01275 4 IPWPTPIQYLPRISREIGAEIYIKRDDLTGLGIGGNKIRKLEYLLADALSKGA-----DTVITVGAIQSNHARATALAAK 78 (311)
T ss_pred CCCCCcceechhhhhhcCCeEEEEeccCcCCCCCchhHHHHHHHHHHHHHcCC-----CEEEEcCCchhHHHHHHHHHHH
Confidence 3578999999999877778999999999998 99999999999999999987 678888 55999999999999
Q ss_pred HcCCeEEEEecCCC-CHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHH----hCC-CeEEeCCCCCCcchHhHHhch
Q 020528 91 AKGYRLIITMPASM-SLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRD----KTP-NSYVLQQFENPANPKIHYETT 164 (325)
Q Consensus 91 ~~g~~~~i~~p~~~-~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~----~~~-~~~~~~~~~n~~~~~~g~~t~ 164 (325)
.+|++|+||||+.. +..+..+++.+||+|+.++.. ++++..+.++++++ +.+ .+++.+++.|+.+ ..|+.++
T Consensus 79 ~~G~~~~ivvp~~~~~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~g~~~~ 156 (311)
T TIGR01275 79 KLGLDAVLVLREKEELNGNLLLDKLMGAETRVYSAE-EYFEIMKYAEELAEELEKEGRKPYVIPVGGSNSLG-TLGYVEA 156 (311)
T ss_pred HhCCceEEEecCCccCCCCHHHHHHcCCEEEEECch-hhhhhHHHHHHHHHHHHhcCCCeEEECCCCCcHHH-HHHHHHH
Confidence 99999999999975 456677889999999999852 34444455544443 221 2445577788877 4666779
Q ss_pred HHHHHhhhCC--CCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCC---CCCcccccCCCC-CCcccc
Q 020528 165 GPEIWKGTGG--KIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGK---PGPHKIQGIGAG-FIPGVL 238 (325)
Q Consensus 165 ~~Ei~~ql~~--~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~---~~~~~~~gl~~~-~~~~~~ 238 (325)
++||++|+++ .||+||+|+|+|||++|++++||+.+|+++||||+++.+....... ...+.+++++.+ .....+
T Consensus 157 ~~EI~~q~~~~~~~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~vigV~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 236 (311)
T TIGR01275 157 VLEIATQLESEVKFDSIVVAAGSGGTIAGLSLGLSILNEDIRPVGVAVGRFGEDMTDKFVNLVKEIAEGLEVKASEVIPE 236 (311)
T ss_pred HHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCcEEEEEecccHHHHHHHHHHHHHHHHHHhCCCCCCCEEE
Confidence 9999999953 7999999999999999999999999999999999987653211000 012234455443 223334
Q ss_pred ccccCCeEEEeCHHHHHHHHHHHHHHcCCeeec-chHHHHHHHHHHHhcCCCCCCEEEEEeCCCC
Q 020528 239 DVNLLDETVQISSEEAIETAKLLALKEGLLVGI-SSGAATAAAIQIAKRPENAGKLIVVVFPSFG 302 (325)
Q Consensus 239 ~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p-~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g 302 (325)
..++.+..+.|+|+|++++++++++++|+++|| +||++++++++++++...++++||+|+|+|.
T Consensus 237 ~~~~~~~~~~v~d~e~~~~~~~la~~~gi~vep~~sg~~~aa~~~~~~~~~~~~~~vv~i~tGG~ 301 (311)
T TIGR01275 237 LDDYSGPGYGKPTSEVAEIVKKVASREGIILDPVYTGKAFYGLIDLIRKGELGEKGILFIHTGGI 301 (311)
T ss_pred ECCcccCcCCCCCHHHHHHHHHHHHHhCCccCcchHHHHHHHHHHHHHhCCCCCCCEEEEECCCc
Confidence 456778899999999999999999999999999 6999999999987765445778999998763
No 73
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=8.1e-51 Score=377.09 Aligned_cols=288 Identities=17% Similarity=0.169 Sum_probs=232.1
Q ss_pred hHHHhhhhCCCCceecccccCCCC--ceEEEEeCCCCCC---CChhhHHHHHHHHHHHHhCCCCCCCeEEEec--CCChh
Q 020528 9 AKDVTELIGKTPLVYLNRIVDGCV--ARIAAKLEMMEPC---SSVKDRIGYSMIADAEEKGLIRPGESVLIEP--TSGNT 81 (325)
Q Consensus 9 ~~~i~~~~~~TPL~~~~~l~~~~~--~~l~~K~E~~npt---GS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~--ssGN~ 81 (325)
+.++.+.+++|||+++++++...| .+||+|+|++||+ ||||||.+.+++.++.++|. .+|+++ |+|||
T Consensus 6 ~~~~~l~~g~TPL~~~~~l~~~~g~~~~v~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~-----~~vvs~G~s~GN~ 80 (337)
T PRK12390 6 FPRYPLTFGPTPIHPLKRLSAHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDALAQGA-----DTLVSIGGVQSNH 80 (337)
T ss_pred CCccccCCCCCcceeHHHHHHHhCCCCeEEEEeCCCCCCCCccchhHHHHHHHHHHHHHcCC-----CEEEEeCCCccHH
Confidence 447778899999999999887666 6899999999987 78899999999999999997 667877 77999
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCC--------HHHHHHHHHcCCEEEEeCCCC--ChhHHHHHHHHHHHhCCCeEE-eCC
Q 020528 82 GIGLAFMAAAKGYRLIITMPASMS--------LERRMVLLAFGAELVLTDPAR--GMKGAVQKAEEIRDKTPNSYV-LQQ 150 (325)
Q Consensus 82 g~alA~~a~~~g~~~~i~~p~~~~--------~~~~~~~~~~Ga~v~~~~~~~--~~~~~~~~a~~~~~~~~~~~~-~~~ 150 (325)
|+|+|++|+++|++|+||++..++ ..|+.+++.+||+|+.++... .++++.+.+.+..++..+..| +++
T Consensus 81 g~alA~aa~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (337)
T PRK12390 81 TRQVAAVAAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLVPDGFDIGIRKSWEDALEDVRAAGGKPYAIPA 160 (337)
T ss_pred HHHHHHHHHHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEeCCCcchhHHHHHHHHHHHHHhCCCceEEeCC
Confidence 999999999999999999876544 337779999999999998631 234666677777666434334 554
Q ss_pred CCCC-cchHhHHhchHHHHHhh---hCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCC---CCC
Q 020528 151 FENP-ANPKIHYETTGPEIWKG---TGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGK---PGP 223 (325)
Q Consensus 151 ~~n~-~~~~~g~~t~~~Ei~~q---l~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~---~~~ 223 (325)
+.+. .....|+.++++||++| ++++||+||+|+|+||+++|++++||+..|++|||+|+++++..+...+ ...
T Consensus 161 ~~~~~~~~~~G~~~~a~Ei~~q~~~~~~~~d~vvv~vGtGgtlaGi~~~~k~~~~~~rvigV~~~~~~~~~~~~~~~~~~ 240 (337)
T PRK12390 161 GASDHPLGGLGFVGFAEEVRAQEAELGFKFDYIVVCSVTGSTQAGMVVGFAADGRARRVIGIDASAKPEQTRAQVLRIAR 240 (337)
T ss_pred cCCCCCcccHHHHHHHHHHHHHHHhcCCCCCEEEEecCcchhHHHHHHHHHhcCCCceEEEEEecCchHHHHHHHHHHHH
Confidence 4332 12246788889999998 4457999999999999999999999999999999999999987664321 112
Q ss_pred cccccCCCCC--Ccc--ccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecc-hHHHHHHHHHHHhcCC-CCCCEEEEE
Q 020528 224 HKIQGIGAGF--IPG--VLDVNLLDETVQISSEEAIETAKLLALKEGLLVGIS-SGAATAAAIQIAKRPE-NAGKLIVVV 297 (325)
Q Consensus 224 ~~~~gl~~~~--~~~--~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~-sg~a~aa~~~~~~~~~-~~~~~vv~i 297 (325)
+.+++++.+. .+. .+..+++|+.+.|+|+|++++++++++++|+++||+ ||+++++++++.+++. .++++||++
T Consensus 241 ~~a~~~g~~~~~~~~~~~~~~~~~~~~~~vsd~e~~~a~~~la~~~gi~~ep~ysg~~~aa~~~~~~~g~~~~~~~vv~~ 320 (337)
T PRK12390 241 NTAELVELGRDITEDDVVLDERYAGPEYGLPNEGTLEAIRLCARLEGMLTDPVYEGKSMHGMIDLVRKGEFPEGSKVLYA 320 (337)
T ss_pred HHHHHhCCCCCCChhhEEEecccccCCCCCCCHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCCCCCCeEEEE
Confidence 3334444332 222 345678899999999999999999999999999995 9999999999998775 467899999
Q ss_pred eCCC
Q 020528 298 FPSF 301 (325)
Q Consensus 298 ~t~~ 301 (325)
||||
T Consensus 321 htgg 324 (337)
T PRK12390 321 HLGG 324 (337)
T ss_pred eCCC
Confidence 9876
No 74
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=100.00 E-value=8.9e-51 Score=375.94 Aligned_cols=288 Identities=23% Similarity=0.252 Sum_probs=231.7
Q ss_pred hHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCC--CChhhHHHHHHHHHHHHhCCCCCCCeEEEecC--CChhHHH
Q 020528 9 AKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPC--SSVKDRIGYSMIADAEEKGLIRPGESVLIEPT--SGNTGIG 84 (325)
Q Consensus 9 ~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~npt--GS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s--sGN~g~a 84 (325)
..++...+++|||++++.|++..|.+||+|+|++||+ ||||||++.+++.++.++|. ++||++| +||||+|
T Consensus 6 ~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~lnp~g~gs~K~R~~~~~l~~a~~~g~-----~~vvt~g~s~gN~g~a 80 (331)
T PRK03910 6 FPRLELAGLPTPLEPLPRLSAALGPDIYIKRDDLTGLALGGNKTRKLEFLLADALAQGA-----DTLITAGAIQSNHARQ 80 (331)
T ss_pred CCCccccCCCCCceEhhhhhHhhCCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHcCC-----CEEEEcCcchhHHHHH
Confidence 3457788999999999999877778999999999996 59999999999999998886 5688775 4899999
Q ss_pred HHHHHHHcCCeEEEEecCCCCH--------HHHHHHHHcCCEEEEeCCCCChhH-HHHHHHHHHHhCCCeE-EeCCCCCC
Q 020528 85 LAFMAAAKGYRLIITMPASMSL--------ERRMVLLAFGAELVLTDPARGMKG-AVQKAEEIRDKTPNSY-VLQQFENP 154 (325)
Q Consensus 85 lA~~a~~~g~~~~i~~p~~~~~--------~~~~~~~~~Ga~v~~~~~~~~~~~-~~~~a~~~~~~~~~~~-~~~~~~n~ 154 (325)
+|++|+.+|++|+||||+..+. .++.+++.+||+|+.++..++..+ +...++++.++.+..| +..++.|+
T Consensus 81 lA~~a~~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~ 160 (331)
T PRK03910 81 TAAAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVPAGTDMDAQLEELAEELRAQGRRPYVIPVGGSNA 160 (331)
T ss_pred HHHHHHHhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeCccchHHHHHHHHHHHHHHcCCceEEECCCCCCc
Confidence 9999999999999999998765 456899999999999986433323 3445566655543333 44667788
Q ss_pred cchHhHHhchHHHHHhhhCC---CCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCC---CCccccc
Q 020528 155 ANPKIHYETTGPEIWKGTGG---KIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKP---GPHKIQG 228 (325)
Q Consensus 155 ~~~~~g~~t~~~Ei~~ql~~---~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~---~~~~~~g 228 (325)
.+ ..|+.+++.||++|+.+ .||+||+|+|+||+++|++++||+.+|+++||+|||++++.+....+ ..+..++
T Consensus 161 ~~-~~g~~~~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~~a~~ 239 (331)
T PRK03910 161 LG-ALGYVACALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAALGPDIPVIGVTVSRSAAEQEPKVAKLAQATAEL 239 (331)
T ss_pred hh-HHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 87 56888999999999953 69999999999999999999999999999999999998865532111 0122234
Q ss_pred CCCC--CC--ccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecc-hHHHHHHHHHHHhcCCC-CCCEEEEEeCCCC
Q 020528 229 IGAG--FI--PGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGIS-SGAATAAAIQIAKRPEN-AGKLIVVVFPSFG 302 (325)
Q Consensus 229 l~~~--~~--~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~-sg~a~aa~~~~~~~~~~-~~~~vv~i~t~~g 302 (325)
++.+ .. ...+..+++|+.+.|+|+|++++++++++++|+++||+ ||+++++++++.++... ++++||+|+|+ |
T Consensus 240 ~g~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~ep~ysg~~~aa~~~~~~~~~~~~~~~Vv~i~tG-G 318 (331)
T PRK03910 240 LGLPTEIPRADIRLWDDYVGPGYGVPTDEMLEAVKLLARTEGILLDPVYTGKAMAGLIDLIRQGRFKKGGNVLFIHTG-G 318 (331)
T ss_pred cCCCccCCcccEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHcCCCCCCCeEEEEECC-C
Confidence 4332 11 22355678899999999999999999999999999995 99999999998876543 57899999965 5
Q ss_pred C
Q 020528 303 E 303 (325)
Q Consensus 303 ~ 303 (325)
+
T Consensus 319 ~ 319 (331)
T PRK03910 319 A 319 (331)
T ss_pred h
Confidence 4
No 75
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=100.00 E-value=2.7e-50 Score=369.58 Aligned_cols=277 Identities=39% Similarity=0.560 Sum_probs=226.7
Q ss_pred HhhhhCCCCceecc--cccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHH
Q 020528 12 VTELIGKTPLVYLN--RIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMA 89 (325)
Q Consensus 12 i~~~~~~TPL~~~~--~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a 89 (325)
|++++++|||++++ .++...+.+||+|+|++|||||||||++.+++.+++++|. ++|+++|+||||.|+|++|
T Consensus 1 i~~~~~~TPl~~~~~~~~~~~~~~~i~~K~E~~~ptgs~K~R~a~~~l~~a~~~~~-----~~vv~assGN~g~a~A~~a 75 (306)
T PF00291_consen 1 ISLGIGPTPLVRLPSRLLSELGGANIYLKREDLNPTGSFKDRGAYYLLSRAKEKGG-----RTVVGASSGNHGRALAYAA 75 (306)
T ss_dssp GGGGSSSS-EEEEHEHHHHHCTTSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTT-----SEEEEESSSHHHHHHHHHH
T ss_pred CcCCCcCCCEEECccccchhccCCeEEEEECCCCCcCCcccccchhhhhhcccccc-----ceeeeeccCCceehhhhhh
Confidence 57889999999975 4445567899999999999999999999999999998875 6789999999999999999
Q ss_pred HHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHh-------CCCeEEeCCCCCCcchHhHHh
Q 020528 90 AAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDK-------TPNSYVLQQFENPANPKIHYE 162 (325)
Q Consensus 90 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~-------~~~~~~~~~~~n~~~~~~g~~ 162 (325)
+.+|++|++|+|++++..|+++++.+|++|+.++. +++++.+.+.+++++ .++. ++|+ |+.+.+.||.
T Consensus 76 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~g~~ 150 (306)
T PF00291_consen 76 ARLGLKCTIVVPEDVSPEKLKQMRALGAEVILVPG--DVEGAFDDAQELAKERAELLSPFNGE--LNQY-NNPNVIAGYA 150 (306)
T ss_dssp HHHTCEEEEEEETTSHHHHHHHHHHTTCEEEEESS--THHHHHHHHHHHHHHHHHHHHHSTTE--ESTT-TSHHHHHHHH
T ss_pred hhccccceeeeccccccccccceeeecceEEEccc--cccccccccccccccccccccccccc--cCcc-cchhhhhhhh
Confidence 99999999999999999999999999999999985 344444444443332 1122 6777 5555689999
Q ss_pred chHHHHHhhhCCCCCE--EEEecCCchhHHHHHHHHHh--hCCCcEEEEEecCCCcccc----CCCC----CCcccccCC
Q 020528 163 TTGPEIWKGTGGKIDA--LVSGIGTGGTVTGAGKYLKE--HNPEIKLYGVEPVESAVLS----GGKP----GPHKIQGIG 230 (325)
Q Consensus 163 t~~~Ei~~ql~~~~D~--iv~pvG~Gg~~aGi~~~~k~--~~~~~~vigV~~~~~~~~~----~~~~----~~~~~~gl~ 230 (325)
+++.||++|+. .||+ ||+|+|+||+++|++.+++. . |.+|+|+|++.+++++. .+.+ ..+.+++++
T Consensus 151 ~~~~Ei~~q~~-~~d~d~vvv~~GtGg~~~Gi~~~~~~~~~-~~~~vigv~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~ 228 (306)
T PF00291_consen 151 TIGLEIYEQLG-KPDPDYVVVPVGTGGTAAGIAAGLKELIL-PPVRVIGVEPEGSDPLYRSFKAGKPIRLPGESTIAGLG 228 (306)
T ss_dssp HHHHHHHHHHT-TESESEEEEEESSSHHHHHHHHHHHHHCH-TTSEEEEEEETTGHHHHHHHHHTSCEHSSCHHSSTGGT
T ss_pred hcchhcccccc-cccceEEEecCCchhHHHHHHhhhhhhhc-ccccceeeeccCCccccccccccccccccceeeeeccc
Confidence 99999999996 7766 99999999999999999999 7 99999999999997764 2332 124556777
Q ss_pred CCC-Cccc----cccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCC---CCCCEEEEEeCC
Q 020528 231 AGF-IPGV----LDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE---NAGKLIVVVFPS 300 (325)
Q Consensus 231 ~~~-~~~~----~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~---~~~~~vv~i~t~ 300 (325)
.+. .+.. +..++.++++.|+|+|+.++++++++++|+++||++|+++++++++.++.. .++++||+|+||
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~~a~a~aa~~~~~~~~~~~~~~~~~vv~v~tG 306 (306)
T PF00291_consen 229 VPMPFPGELDLELIDEYVGDVVGVSDEEALEAIRELAEREGILVEPSSAAALAAALKLAERGSLAPPAGKRVVVVLTG 306 (306)
T ss_dssp SSSCTTTTHHHHHHHHETEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHHHHHHHHTGCHTTTTSEEEEEE-B
T ss_pred CCccchhhhhhhhhhhccccccccchHHHHHHHHHHHHHcCcEEcHHHHHHHHHHHHHHHhCCccccCCCeEEEEcCC
Confidence 655 2222 334566778999999999999999999999999999999999999887763 378999999975
No 76
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=100.00 E-value=6.5e-50 Score=370.88 Aligned_cols=287 Identities=19% Similarity=0.198 Sum_probs=232.7
Q ss_pred hHHHhhhhCCCCceecccccCCCC--ceEEEEeCCCCCC---CChhhHHHHHHHHHHHHhCCCCCCCeEEEec--CCChh
Q 020528 9 AKDVTELIGKTPLVYLNRIVDGCV--ARIAAKLEMMEPC---SSVKDRIGYSMIADAEEKGLIRPGESVLIEP--TSGNT 81 (325)
Q Consensus 9 ~~~i~~~~~~TPL~~~~~l~~~~~--~~l~~K~E~~npt---GS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~--ssGN~ 81 (325)
..++.+.+|+|||+++++|++.+| .+||+|+|++||+ ||||||.+.+++.+++++|+ +.|+++ |+|||
T Consensus 5 ~~~~~l~~g~TPl~~~~~l~~~~g~~~~l~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~-----~~vvs~ggs~gN~ 79 (337)
T TIGR01274 5 FPRYPLTFGPSPIHPLPRLSQHLGGKVTLYAKREDCNSGLAFGGNKTRKLEYLIPDAQAQGC-----TTLVSIGGIQSNQ 79 (337)
T ss_pred CCccccCCCCCCceEhHhhHHhcCCCceEEEEccCCcCCcCccchHHHHHHHHHHHHHHcCC-----CEEEECCCCcchH
Confidence 456778899999999999987765 4999999999986 77799999999999999997 677876 66999
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCC--------HHHHHHHHHcCCEEEEeCCCC--ChhHHHHHHHHHHHhCC-CeEEeCC
Q 020528 82 GIGLAFMAAAKGYRLIITMPASMS--------LERRMVLLAFGAELVLTDPAR--GMKGAVQKAEEIRDKTP-NSYVLQQ 150 (325)
Q Consensus 82 g~alA~~a~~~g~~~~i~~p~~~~--------~~~~~~~~~~Ga~v~~~~~~~--~~~~~~~~a~~~~~~~~-~~~~~~~ 150 (325)
|+|+|++|+++|++|+||+|+..+ ..|+.+++.+||+|+.++... ...++...+.+.+++.+ ..|+++.
T Consensus 80 g~alA~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~i~~ 159 (337)
T TIGR01274 80 TRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDPDGFDIGHRNSWERALEEVRGAGGKPYPIPA 159 (337)
T ss_pred HHHHHHHHHHcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEeCCcccccchHHHHHHHHHHHhcCCceEEeCC
Confidence 999999999999999999998542 589999999999999998632 12356656666655552 3366665
Q ss_pred CCC--CcchHhHHhchHHHHHhhh---CCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCC---CC
Q 020528 151 FEN--PANPKIHYETTGPEIWKGT---GGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGK---PG 222 (325)
Q Consensus 151 ~~n--~~~~~~g~~t~~~Ei~~ql---~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~---~~ 222 (325)
+.+ +.. ..|+.++++||++|+ +..||+||+|+|+||+++|+++++++..+++|||+|++++++.+.... ..
T Consensus 160 ~~~~~~~~-~~G~~~~~~Ei~eq~~~~~~~~D~vvv~vGtGgt~aGl~~~~~~~~~~~~vigV~~~~~~~~~~~~~~~~~ 238 (337)
T TIGR01274 160 GCSDHPLG-GLGFVGFAFEVREQEGELGFKFDYVVVCSVTGSTQAGMVAGFAADGRKDRVIGIDASATPEQTRAQILRIA 238 (337)
T ss_pred CCCCCccc-hhHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHH
Confidence 533 333 467888899999995 347999999999999999999999999999999999999997663221 11
Q ss_pred CcccccCCCCC--Cc--cccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeec-chHHHHHHHHHHHhcCC-CCCCEEEE
Q 020528 223 PHKIQGIGAGF--IP--GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGI-SSGAATAAAIQIAKRPE-NAGKLIVV 296 (325)
Q Consensus 223 ~~~~~gl~~~~--~~--~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p-~sg~a~aa~~~~~~~~~-~~~~~vv~ 296 (325)
.+.+++++.+. .+ +.+..+++++.+.|+|+|++++++++++++|+++|| +||+++++++++.+++. .++++||+
T Consensus 239 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~eGi~~ep~ytg~~~aa~~~~~~~g~~~~~~~vv~ 318 (337)
T TIGR01274 239 RNTAEKIGLERDITEDDVVLDTRFAYPEYGVPNEGTLEAIRLCAKMEGVLTDPVYEGKSMHGMIEMIRRGEFKEGSNVLY 318 (337)
T ss_pred HHHHHHhCCCCCcCccceEEeccccCCCcCCCCHHHHHHHHHHHHhcCCccCcchHHHHHHHHHHHHhcCCCCCCCEEEE
Confidence 23344554332 11 345667789999999999999999999999999999 59999999999988775 56889999
Q ss_pred EeCCC
Q 020528 297 VFPSF 301 (325)
Q Consensus 297 i~t~~ 301 (325)
+||+|
T Consensus 319 ~htGG 323 (337)
T TIGR01274 319 AHLGG 323 (337)
T ss_pred EeCCC
Confidence 99764
No 77
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=8.3e-49 Score=386.30 Aligned_cols=293 Identities=23% Similarity=0.243 Sum_probs=229.4
Q ss_pred HHHhhhhC-CCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHH
Q 020528 10 KDVTELIG-KTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFM 88 (325)
Q Consensus 10 ~~i~~~~~-~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~ 88 (325)
..+..+.| +|||+++++|++.+|.+||+|+|++|||||||+|.+...+..+++.|. .+.|+++|+||||.|+|++
T Consensus 262 ~~~~~~~grpTPL~~~~~Ls~~~G~~IylK~E~lnptGS~K~r~al~~~~~a~~~g~----~~vi~e~gsGnhG~A~A~~ 337 (610)
T PRK13803 262 RLLQNYAGRPTPLTEAKRLSDIYGARIYLKREDLNHTGSHKINNALGQALLAKRMGK----TRIIAETGAGQHGVATATA 337 (610)
T ss_pred HHHHHhCCCCCcceeHHHHHHhhCCEEEEEeCCCCCcccHHHHHHHHHHHHHHHcCC----CEEEEecChHHHHHHHHHH
Confidence 34456676 799999999998778899999999999999999999999999988885 2456678999999999999
Q ss_pred HHHcCCeEEEEecCCC---CHHHHHHHHHcCCEEEEeCCC-CChhHHHHHHHH-HHHhCCCeEEeCCCC---C--CcchH
Q 020528 89 AAAKGYRLIITMPASM---SLERRMVLLAFGAELVLTDPA-RGMKGAVQKAEE-IRDKTPNSYVLQQFE---N--PANPK 158 (325)
Q Consensus 89 a~~~g~~~~i~~p~~~---~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~-~~~~~~~~~~~~~~~---n--~~~~~ 158 (325)
|+++|++|+||||... +..++.+|+.+||+|+.++.. .++.++...+.+ +..+.++.+|+.++. + |.+..
T Consensus 338 aa~~Gl~~~I~m~~~~~~~~~~nv~~m~~~GA~Vi~v~~~~~~~~~a~~~a~~~~~~~~~~~~y~~~~~~g~~p~p~~v~ 417 (610)
T PRK13803 338 CALFGLKCTIFMGEEDIKRQALNVERMKLLGANVIPVLSGSKTLKDAVNEAIRDWVASVPDTHYLIGSAVGPHPYPEMVA 417 (610)
T ss_pred HHHcCCcEEEEEeCCcccchhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEeCCcCCCCCcHHHHH
Confidence 9999999999999863 356889999999999999852 356666555544 334444666764432 2 33334
Q ss_pred hHHhchHHHHHhhhC----CCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCc--------cccCCCCC----
Q 020528 159 IHYETTGPEIWKGTG----GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESA--------VLSGGKPG---- 222 (325)
Q Consensus 159 ~g~~t~~~Ei~~ql~----~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~--------~~~~~~~~---- 222 (325)
.||++++.||.+|+. ..||+||+|+|+||+++|++.+|++ .|++|||||||.++. ++..+.+.
T Consensus 418 ~~~~tig~Ei~~Q~~~~~g~~pD~vV~~vGgGg~~~Gi~~~f~~-~~~v~iigVE~~g~~~~~~~~~a~l~~g~~g~~~g 496 (610)
T PRK13803 418 YFQSVIGEEAKEQLKEQTGKLPDAIIACVGGGSNAIGIFYHFLD-DPSVKLIGVEAGGKGVNTGEHAATIKKGRKGVLHG 496 (610)
T ss_pred HHhhHHHHHHHHHHHHhhCCCCCEEEEEeCcCHhHHHHHHHHhh-CCCceEEEEecCCCCcccccccchhhcCCeeeecc
Confidence 589999999999984 2699999999999999999999964 789999999999862 23333221
Q ss_pred ---------------C-cccccCCCCCC-cccc--ccccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHH
Q 020528 223 ---------------P-HKIQGIGAGFI-PGVL--DVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQI 283 (325)
Q Consensus 223 ---------------~-~~~~gl~~~~~-~~~~--~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~ 283 (325)
+ +...|+..+.+ |..+ .....++.+.|+|+|+++++++|+++||++++++||+++|+++++
T Consensus 497 ~~~~~~~~~~g~~~~~~sia~gl~~~gvg~~~~~~~~~~~~~~v~Vtd~ea~~a~~~La~~eGi~~~~ssa~alA~~~~~ 576 (610)
T PRK13803 497 SMTYLMQDENGQILEPHSISAGLDYPGIGPMHANLFETGRAIYTSVTDEEALDAFKLLAKLEGIIPALESSHALAYLKEG 576 (610)
T ss_pred ceeeeecccCCcccCCceeeccCCCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHHh
Confidence 1 12234432221 2222 123345789999999999999999999999999999999999987
Q ss_pred HhcCCCCCCEEEEEeCCCCCCCcch
Q 020528 284 AKRPENAGKLIVVVFPSFGERYLSS 308 (325)
Q Consensus 284 ~~~~~~~~~~vv~i~t~~g~~~~~~ 308 (325)
+... .++++||+++||+|+||+++
T Consensus 577 ~~~~-~~~~~Vvv~lsG~G~kd~~~ 600 (610)
T PRK13803 577 RKKF-KKKDIVIVNLSGRGDKDIPT 600 (610)
T ss_pred chhc-CCCCeEEEEeCCCCcCCHHH
Confidence 5442 35789999999999999886
No 78
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=4.8e-48 Score=357.09 Aligned_cols=286 Identities=21% Similarity=0.244 Sum_probs=222.7
Q ss_pred hhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCCC--CChhhHHHHHHHHHHHHhCCCCCCCeEEE--ecCCChhHH
Q 020528 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPC--SSVKDRIGYSMIADAEEKGLIRPGESVLI--EPTSGNTGI 83 (325)
Q Consensus 8 ~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~npt--GS~K~R~a~~~~~~a~~~g~~~~g~~~vv--~~ssGN~g~ 83 (325)
.+.++.+.+++|||++++++++..|.+||+|+|++||+ ||||+|++.+++..+.++|. .+|+ ++|+||||+
T Consensus 11 ~~~~~~l~~~~TPl~~~~~l~~~~g~~v~~K~E~l~~~~~gg~K~R~~~~~l~~a~~~G~-----~~vv~~~~ssGN~g~ 85 (329)
T PRK14045 11 KFPRVELIPWETPIQYLPNISRELGADVYVKRDDLTGLGIGGNKIRKLEYLLGDALSRGA-----DVVITVGAVHSNHAF 85 (329)
T ss_pred cCCCcccCCCCCCcccchhhHHHhCCeEEEEcccccCCCCCcchHHHHHhHHHHHHHcCC-----CEEEEeCccHHHHHH
Confidence 34678889999999999999876778999999999996 89999999999999999887 4566 689999999
Q ss_pred HHHHHHHHcCCeEEEEecCCCCHH-HHHHHHHcCCEEEEeCCCCC---hhHHHHHHHHHHHhCCCeEE-eCCCCCCcchH
Q 020528 84 GLAFMAAAKGYRLIITMPASMSLE-RRMVLLAFGAELVLTDPARG---MKGAVQKAEEIRDKTPNSYV-LQQFENPANPK 158 (325)
Q Consensus 84 alA~~a~~~g~~~~i~~p~~~~~~-~~~~~~~~Ga~v~~~~~~~~---~~~~~~~a~~~~~~~~~~~~-~~~~~n~~~~~ 158 (325)
|+|++|+.+|++|++|+|...+.. +..+++.+||+++.++...+ .+.+.+.+.++.++.+..|+ .+++.|+.++.
T Consensus 86 alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~n~~~~~ 165 (329)
T PRK14045 86 VTGLAAKKLGLDAVLVLRGKEELKGNYLLDKIMGIETRVYEAKDSFELMKYAEEVAEELKGEGRKPYIIPPGGASPVGTL 165 (329)
T ss_pred HHHHHHHHcCCeEEEEEeCCCCCCcCHHHHHHCCCEEEEECCCcccchHHHHHHHHHHHHhcCCCEEEECCCCCchhHHH
Confidence 999999999999999999875433 66778999999998874322 23455566666655534555 45567887754
Q ss_pred hHHhchHHHHHhhhC---CCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcc-ccC----CCCCCcccccCC
Q 020528 159 IHYETTGPEIWKGTG---GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV-LSG----GKPGPHKIQGIG 230 (325)
Q Consensus 159 ~g~~t~~~Ei~~ql~---~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~-~~~----~~~~~~~~~gl~ 230 (325)
|+.+...||++|+. ..+|+||+|+|||||++|+++++|..+|++|||+|++.+... +.. .......+.+++
T Consensus 166 -g~~~~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~~~~~~~~~~~~~~~~~~~~~~~g~~ 244 (329)
T PRK14045 166 -GYVRAVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAVGSFGEKMKEKVKNLVKKTKELLGVK 244 (329)
T ss_pred -HHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 44444459999985 379999999999999999999999999999999999976321 111 000112234444
Q ss_pred CCC-CccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeec-chHHHHHHHHHHHhcCCCCCCEEEEEeCCCC
Q 020528 231 AGF-IPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGI-SSGAATAAAIQIAKRPENAGKLIVVVFPSFG 302 (325)
Q Consensus 231 ~~~-~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p-~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g 302 (325)
... .|..++..+ |++..++ +|+++++++++++|||++|| +||++++++++++++.. .+++||+|||||-
T Consensus 245 ~~~~~~~~~d~~~-~~y~~~~-~e~~~~~~~la~~eGi~ldpvytgk~~~a~~~~~~~~~-~~~~iv~ihtGG~ 315 (329)
T PRK14045 245 VKVQEPELYDYSF-GEYGKIT-KEVAKLIRSVGTMEGLILDPVYTGKAFYGLMDLAKKGE-LGEKILFIHTGGI 315 (329)
T ss_pred CCccceEeccccc-CCCCCCC-HHHHHHHHHHHHhhCCCCccchHHHHHHHHHHHHHcCC-CCCCEEEEECCCc
Confidence 333 333334433 7766676 69999999999999999999 99999999999998763 3679999998773
No 79
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-47 Score=354.30 Aligned_cols=288 Identities=24% Similarity=0.262 Sum_probs=244.7
Q ss_pred HHhhhhCCCCceecccccCCCC---ceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHH
Q 020528 11 DVTELIGKTPLVYLNRIVDGCV---ARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAF 87 (325)
Q Consensus 11 ~i~~~~~~TPL~~~~~l~~~~~---~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~ 87 (325)
.+.+..+.||+++.+++...++ .++|+|.|++|||||||||++..+++.+.+.|. .+|+++||||+|.|+|+
T Consensus 69 ~~~l~eg~tp~~~~~~~~~~l~~~~~~lyvk~~~~nPT~SFKDrg~~~~~~~~~~~g~-----~~I~~ASSGnTgAs~aa 143 (411)
T COG0498 69 AVSLGEGGTPLYKAPALAAPLGVLNDNLYVKELGHNPTGSFKDRGMTVLVSLAKELGA-----KTILCASSGNTGASAAA 143 (411)
T ss_pred hhhhhhccCccccCcccchhhccCCcceehhhhccCCCcchhhhhHHHHHHHHHHhcC-----CEEEEeCCchHHHHHHH
Confidence 4567889999999988776554 359999999999999999999999999999884 46999999999999999
Q ss_pred HHHHcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHH
Q 020528 88 MAAAKGYRLIITMPAS-MSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGP 166 (325)
Q Consensus 88 ~a~~~g~~~~i~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~ 166 (325)
++++.|++|+|++|.+ ++..|+.++..+|++++.+++ ++|++++.+++++++. ++++....-||.. ++||.|+++
T Consensus 144 ya~rag~~v~Vl~P~g~vs~~k~~q~~~~ga~~i~v~G--~fDda~~~vk~~~~~~-~~~~~~nsiNp~r-legq~t~~f 219 (411)
T COG0498 144 YAARAGLKVFVLYPKGKVSPGKLAQMLTLGAHVIAVDG--NFDDAQELVKEAANRE-GLLSAVNSINPYR-LEGQKTYAF 219 (411)
T ss_pred HhccCCCeEEEEecCCCCCHHHHHHHHhcCCEEEEEcC--cHHHHHHHHHHHHhhC-CceeeccccCHHH-hhhhhhhHh
Confidence 9999999999999998 999999999999999999997 6899999999999876 5566655556665 789999999
Q ss_pred HHHhhhC-CCCCEEEEecCCchhHHHHHHHHHhhCCC------cEEEEEecCCCccccCCCC----C-CcccccCCCCCC
Q 020528 167 EIWKGTG-GKIDALVSGIGTGGTVTGAGKYLKEHNPE------IKLYGVEPVESAVLSGGKP----G-PHKIQGIGAGFI 234 (325)
Q Consensus 167 Ei~~ql~-~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~------~~vigV~~~~~~~~~~~~~----~-~~~~~gl~~~~~ 234 (325)
||++|+. ..||+|++|+|+||++.|+++++++..|. +++.+|++++..++..... . .+...+|..+.
T Consensus 220 e~~~ql~~~~p~~v~vPvGn~gni~a~~~g~~~~~~~g~i~~~p~~~~vqaeg~~p~~~~~~~~~~~~~T~a~am~I~~- 298 (411)
T COG0498 220 EIAEQLGWKAPDHVVVPVGNGGNLLAIYKGFKEGLPIGKIDKAPNMNGVQAEGFSPGVYAWKEGRETPETIAPAMDIGN- 298 (411)
T ss_pred HHHHHhCCCCCCeEEEeCCchHHHHHHHHHHHhcccccchhcCchhhhhhHhhccchhhhcccccccccccccccccCC-
Confidence 9999997 47999999999999999999999999874 7889999999877643211 1 22334443332
Q ss_pred cccccc------ccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcch
Q 020528 235 PGVLDV------NLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSS 308 (325)
Q Consensus 235 ~~~~~~------~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~ 308 (325)
|.++.+ ......+.|||+|++++++++++.+|+++||+||+++++++++.++...+++++|++.|++|.|+.++
T Consensus 299 p~n~~r~l~a~~es~g~~~~vsdeEi~~a~~~l~~~eG~~~eP~sA~ava~l~k~~~~~i~~~~~vV~v~Tg~~~K~~~~ 378 (411)
T COG0498 299 PSNWERALFALRESGGLAVAVSDEEILEAIKLLAEREGILIEPHSAVAVAALLKLREKIIDPDETVVLVLTGHGLKFPDT 378 (411)
T ss_pred CCCHHHHHHHHHhcCCceEEeCHHHHHHHHHHHHHhCCcccCccHHHHHHHHHHHHHhhcCCCCeEEEEecCCcccChhH
Confidence 544432 22355899999999999999999999999999999999999998762256789999999999999987
No 80
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-37 Score=272.04 Aligned_cols=294 Identities=25% Similarity=0.312 Sum_probs=227.4
Q ss_pred HHHhhhhCC-CCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHH
Q 020528 10 KDVTELIGK-TPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFM 88 (325)
Q Consensus 10 ~~i~~~~~~-TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~ 88 (325)
..+..+.|+ |||+..++|++.++++||+|+|++|+||+||.+.+...+.-|++.|+ ++.|.+.+.|.||.|.|.+
T Consensus 47 ~~l~~Y~GRptpLy~a~~Lt~~~gakiyLKREDL~HtGAHKiNN~lGQ~LLAkrMGK----~riIAETGAGQHGVAtAta 122 (396)
T COG0133 47 YLLKDYAGRPTPLYFAERLTEHLGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----TRIIAETGAGQHGVATATA 122 (396)
T ss_pred HHHHHhCCCCChhHHHHHHHHhhCceEEEehhhhcccchhhHHHHHHHHHHHHHhCC----ceEEeecCCCcccHHHHHH
Confidence 344567775 99999999999999999999999999999999999999999999998 4667788889999999999
Q ss_pred HHHcCCeEEEEecCC---CCHHHHHHHHHcCCEEEEeCC-CCChhHHHHHHHHHHHh-CCCeEEeC-----CCCCCcchH
Q 020528 89 AAAKGYRLIITMPAS---MSLERRMVLLAFGAELVLTDP-ARGMKGAVQKAEEIRDK-TPNSYVLQ-----QFENPANPK 158 (325)
Q Consensus 89 a~~~g~~~~i~~p~~---~~~~~~~~~~~~Ga~v~~~~~-~~~~~~~~~~a~~~~~~-~~~~~~~~-----~~~n~~~~~ 158 (325)
|+++|++|+|+|-.. .+..++-+|+.+||+|+.|.. +.+..++.+.|.+-+-. -+..||+. |.--|....
T Consensus 123 ~A~fgl~C~iYMGa~Dv~RQ~~NVfRM~LlGA~V~pV~sGs~TLKDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP~iVR 202 (396)
T COG0133 123 AALFGLECVIYMGAEDVERQALNVFRMRLLGAEVVPVTSGSGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVR 202 (396)
T ss_pred HHHhCCceEEEecchhhhhcccchhhhhhcCceEEEeccCCchHHHHHHHHHHHHHhccccceEEEeeccCCCCchHHHH
Confidence 999999999999874 456678899999999999964 55678888888665543 34566652 111233334
Q ss_pred hHHhchHHHHHhhh----CCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCc--------cccCCCCCC---
Q 020528 159 IHYETTGPEIWKGT----GGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESA--------VLSGGKPGP--- 223 (325)
Q Consensus 159 ~g~~t~~~Ei~~ql----~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~--------~~~~~~~~~--- 223 (325)
.-|+.|+.|.-+|+ +.-||.||.|||+|++..|++.-|.. .+++++||||+.+.. ++..|.++.
T Consensus 203 dFQ~vIG~E~k~Qile~egrlPD~vvACVGGGSNAiG~F~~Fi~-d~~V~LiGvEaaG~Gi~t~~HaAtl~~G~~GvlhG 281 (396)
T COG0133 203 DFQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAGKGIETGKHAATLTAGRPGVLHG 281 (396)
T ss_pred HHHHHHhHHHHHHHHHHhCCCCCeEEEeccCCcchhhhcccccC-CCCceEEEeccCcCccCCCccceeecCCCceeeec
Confidence 57999999988885 35699999999999999999888765 368999999998763 233333210
Q ss_pred -----------ccc--ccCCCCC-----Cccccccc--cCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHH
Q 020528 224 -----------HKI--QGIGAGF-----IPGVLDVN--LLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQI 283 (325)
Q Consensus 224 -----------~~~--~gl~~~~-----~~~~~~~~--~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~ 283 (325)
... ..|+.+. -|..-..+ ---+.+.|+|+|++++.+.|.+.|||+....|+.|+|.+.++
T Consensus 282 ~~tyllQd~~GQi~e~hSISAGLDYPgVGPeha~l~~~gRa~y~~itD~EAl~af~~L~r~EGIIPALESsHAlA~a~kl 361 (396)
T COG0133 282 MKTYLLQDEDGQILESHSISAGLDYPGVGPEHAYLKDIGRAEYVSITDEEALEAFQLLSRLEGIIPALESSHALAYALKL 361 (396)
T ss_pred ccceeeEcCCCCEeeeeeeccCCCCCCCChhHHHHHhcCceeEEecChHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHh
Confidence 001 1122221 12211111 123478899999999999999999999999999999999999
Q ss_pred HhcCCCCCCEEEEEeCCCCCCCcchh
Q 020528 284 AKRPENAGKLIVVVFPSFGERYLSSV 309 (325)
Q Consensus 284 ~~~~~~~~~~vv~i~t~~g~~~~~~~ 309 (325)
+.... +++.+|+-+++.|+|++.++
T Consensus 362 a~~~~-~~~~ivvnlSGRGDKDv~tv 386 (396)
T COG0133 362 APKLP-KDEIIVVNLSGRGDKDVFTV 386 (396)
T ss_pred chhcC-CCcEEEEEccCCCcccHHHH
Confidence 87653 55578888888899998873
No 81
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=100.00 E-value=1.2e-36 Score=289.31 Aligned_cols=273 Identities=15% Similarity=0.124 Sum_probs=213.4
Q ss_pred CCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHH---HHHHHHhCCCCCCCeEEEecCCChhHHH-HHHHHHHcCC
Q 020528 19 TPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSM---IADAEEKGLIRPGESVLIEPTSGNTGIG-LAFMAAAKGY 94 (325)
Q Consensus 19 TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~~---~~~a~~~g~~~~g~~~vv~~ssGN~g~a-lA~~a~~~g~ 94 (325)
+||.++.. ++|++..+++||||||||++..+ +.++.++. .+...|+++||||+|.| ++.++.+.|+
T Consensus 88 ~pl~~l~~-------~~~~lELfhGPT~sFKD~a~~~l~~l~~~~~~~~---~~~~~Il~ATSGdTG~Aa~aaf~~~~gi 157 (460)
T cd01560 88 APLVQLGD-------NLYVLELFHGPTLAFKDMALQFLGRLLEYFLKRR---NERITILVATSGDTGSAAIEGFRGKPNV 157 (460)
T ss_pred cceEEeCC-------CcEEeeeeeCCCcchHHhHHHHHHHHHHHHHHhc---CCCeEEEEcCCCcHHHHHHHHHhCcCCC
Confidence 78777652 69999999999999999999876 66676541 12378999999999999 5888999999
Q ss_pred eEEEEecCC-CCHHHHHHHHHcCC---EEEEeCCCCChhHHHHHHHHHHHhC-----CCeEEeCCCCCCcchHhHHhchH
Q 020528 95 RLIITMPAS-MSLERRMVLLAFGA---ELVLTDPARGMKGAVQKAEEIRDKT-----PNSYVLQQFENPANPKIHYETTG 165 (325)
Q Consensus 95 ~~~i~~p~~-~~~~~~~~~~~~Ga---~v~~~~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~n~~~~~~g~~t~~ 165 (325)
+|+|++|.+ ++..+..+|..+|+ +++.+++ ++|+|++.+++++++. -+++..|.. |+.. +.+|.+.+
T Consensus 158 ~v~Vl~P~g~vs~~Q~~Qm~t~g~~Nv~vi~V~G--~fDd~q~~vk~~~~d~~~~~~~~l~saNSi-N~~R-i~~Q~~yy 233 (460)
T cd01560 158 DVVVLYPKGGVSPIQELQMTTLPADNVHVVAVEG--DFDDCQSLVKALFADEDFNKKLKLSSANSI-NWAR-ILAQIVYY 233 (460)
T ss_pred EEEEEEcCCCCCHHHHHHHHhhCCCceEEEEEcC--CHHHHHHHHHHHhcChhhHhcceEEEEecc-CHHH-HHHHHHHH
Confidence 999999996 99999999999996 7888876 6999999999987652 135555553 5554 78999999
Q ss_pred HHHHhhhCC----CCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcc---ccCCCCCC--cccccCCCCC---
Q 020528 166 PEIWKGTGG----KIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV---LSGGKPGP--HKIQGIGAGF--- 233 (325)
Q Consensus 166 ~Ei~~ql~~----~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~---~~~~~~~~--~~~~gl~~~~--- 233 (325)
+|+++|+.+ .||+|+||+|+||++.|++.+.+...|-.|+|+++..+... +..|.... .....+++++
T Consensus 234 f~a~~ql~~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~a~n~n~il~~~~~~G~y~~~~~~~~T~spamdI~ 313 (460)
T cd01560 234 FYAYLQLLKRGEGEKVEFSVPTGNFGNILAGYYAKKMGLPIKKLIVATNENDVLRRFFKTGRYDRRESLKQTLSPAMDIL 313 (460)
T ss_pred HHHHHHhccccCCCCCEEEEECCcHHHHHHHHHHHHcCCCCccEEEEeCCChHHHHHHHcCCCcCCCCCCCCcCchhhcC
Confidence 999999963 58999999999999999999988767878999976655421 12343221 1223333322
Q ss_pred CccccccccC-----C-------------------------------eEEEeCHHHHHHHHHHHHHHcCCeeecchHHHH
Q 020528 234 IPGVLDVNLL-----D-------------------------------ETVQISSEEAIETAKLLALKEGLLVGISSGAAT 277 (325)
Q Consensus 234 ~~~~~~~~~~-----d-------------------------------~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~ 277 (325)
.|+++.+-+. | ..+.|+|+|+.++++++++++|+++||+||+++
T Consensus 314 ~psn~eR~L~~l~~~~g~~~~~~m~~~~~~g~~~~~~~~l~~~~~~f~a~~vsD~ei~~~i~~~~~~~G~~vdPhtAva~ 393 (460)
T cd01560 314 KSSNFERLLFLLAGRDRTKVKMLMEEFEATGFLSLPKEELKKLREDFSSGSVSDEETLETIREVYEETGYLIDPHTAVGV 393 (460)
T ss_pred CCCCHHHHHHHHhCCCHHHHHHHHHHHHhcCCEecCHHHHHhhhccceEEEECHHHHHHHHHHHHHhcCEEECchHHHHH
Confidence 2444332110 1 468999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCEEEEEeCCCCCCCcch
Q 020528 278 AAAIQIAKRPENAGKLIVVVFPSFGERYLSS 308 (325)
Q Consensus 278 aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~ 308 (325)
+++.++.++ +++++|++.|+++.|+.+.
T Consensus 394 aa~~~~~~~---~~~~~V~l~Ta~p~Kf~~~ 421 (460)
T cd01560 394 RAAERVRKS---PGTPGVVLSTAHPAKFPEA 421 (460)
T ss_pred HHHHHHHhc---cCCCEEEEecCCcccCHHH
Confidence 999887654 3467899999999999776
No 82
>PRK09225 threonine synthase; Validated
Probab=100.00 E-value=1e-36 Score=289.79 Aligned_cols=274 Identities=15% Similarity=0.132 Sum_probs=212.7
Q ss_pred CCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHH---HHHHHHHhCCCCCCCeEEEecCCChhHHHH-HHHHHHcC
Q 020528 18 KTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYS---MIADAEEKGLIRPGESVLIEPTSGNTGIGL-AFMAAAKG 93 (325)
Q Consensus 18 ~TPL~~~~~l~~~~~~~l~~K~E~~nptGS~K~R~a~~---~~~~a~~~g~~~~g~~~vv~~ssGN~g~al-A~~a~~~g 93 (325)
.+||.+++. ++|+..-+++||||||||++.. ++.++.+ +. ...|+++||||+|.|+ +.++.+.|
T Consensus 88 ~~pl~~l~~-------~~~~lELfhGPT~sFKD~a~~~l~~~l~~a~~-~~----~~~Il~ATSGdtG~Aa~aaf~~~~g 155 (462)
T PRK09225 88 IAPLVQLDD-------NLYVLELFHGPTLAFKDFALQFLAQLLEYVLK-GE----KITILGATSGDTGSAAAEAFRGKPN 155 (462)
T ss_pred ccceEEeCC-------CceeHhhccCCccchhhhHHHHHHHHHHHHHh-CC----CcEEEEcCCCcHHHHHHHHHhCcCC
Confidence 378877642 6999999999999999999988 7888877 42 3689999999999988 78899999
Q ss_pred CeEEEEecCC-CCHHHHHHHHHc-CCEEEEeCCCCChhHHHHHHHHHHHhC-----CCeEEeCCCCCCcchHhHHhchHH
Q 020528 94 YRLIITMPAS-MSLERRMVLLAF-GAELVLTDPARGMKGAVQKAEEIRDKT-----PNSYVLQQFENPANPKIHYETTGP 166 (325)
Q Consensus 94 ~~~~i~~p~~-~~~~~~~~~~~~-Ga~v~~~~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~n~~~~~~g~~t~~~ 166 (325)
++|+|++|++ ++..++++|..+ |++|+.+....++|+|++.+++++++. -+++..|.. |+.. +.+|.++++
T Consensus 156 i~~~V~~P~g~vs~~q~~Qm~t~~g~nv~vi~V~G~fDD~q~~vk~~~~d~~~~~~~~l~saNSi-N~~R-i~gQ~~yyf 233 (462)
T PRK09225 156 VRVVILYPKGKVSPVQEKQMTTLQGDNIHVVAVEGNFDDCQALVKAAFNDEELKEKLKLSSANSI-NIGR-LLAQIVYYF 233 (462)
T ss_pred CEEEEEEcCCCCCHHHHHHHHhhcCCCeEEEEeCCCHHHHHHHHHHHhhchhhhhcCceEEEecc-CHHH-HHHHHHHHH
Confidence 9999999996 999999999999 998744433347999999999987652 145666664 5655 789999999
Q ss_pred HHHhhhCC---CCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcc---ccCCCCCCc-ccccCCCCC---Ccc
Q 020528 167 EIWKGTGG---KIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV---LSGGKPGPH-KIQGIGAGF---IPG 236 (325)
Q Consensus 167 Ei~~ql~~---~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~---~~~~~~~~~-~~~gl~~~~---~~~ 236 (325)
|+++|+.+ .||+|+||+|+||++.|.+.+.+.-.|-.|+|+++..+... +..|...+. ....++.++ .|+
T Consensus 234 ea~~ql~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~A~n~n~~l~~~~~~G~y~~~~~~~T~s~amdI~~ps 313 (462)
T PRK09225 234 YAYLQLGIEAGEKVNFSVPSGNFGNILAGYYAKKMGLPIKRLIVATNENDVLTRFLKTGVYDPRPTVATLSPAMDISVSS 313 (462)
T ss_pred HHHHHhccccCCCCEEEEECCcHHHHHHHHHHHHcCCCcceEEEEecCChHHHHHHHcCCCccCCCCCCcCchhhcCCCC
Confidence 99999964 38999999999999999999966656777999998444321 123432211 222333221 244
Q ss_pred cccc------------c---------cCC---------------eEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHH
Q 020528 237 VLDV------------N---------LLD---------------ETVQISSEEAIETAKLLALKEGLLVGISSGAATAAA 280 (325)
Q Consensus 237 ~~~~------------~---------~~d---------------~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~ 280 (325)
++.+ - .-. ..+.|+|+|+.++++++++++|+++||+||++++++
T Consensus 314 n~eR~l~~~~~~~~~~v~~~m~~l~~~gg~~~~~~~~~~~~~~f~a~~vsD~ei~~ai~~~~~~~G~~~dPhtAva~aa~ 393 (462)
T PRK09225 314 NFERLLFDLLGRDAAAVEELMEDLEEKGEYDLSDEELAALREDFSAGSVSDEETLATIREVYEEYGYLIDPHTAVAYKAA 393 (462)
T ss_pred cHHHHHHHhcCCcHHHHHHHHHHHHHcCCcccCHHHHHHhhhcceEEEECHHHHHHHHHHHHHhCCEEECchHHHHHHHH
Confidence 4333 0 001 468899999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCEEEEEeCCCCCCCcchh
Q 020528 281 IQIAKRPENAGKLIVVVFPSFGERYLSSV 309 (325)
Q Consensus 281 ~~~~~~~~~~~~~vv~i~t~~g~~~~~~~ 309 (325)
.++. .+++++|++.|+++.|+.+.+
T Consensus 394 ~~~~----~~~~~~V~l~Ta~p~Kf~~~v 418 (462)
T PRK09225 394 REYL----DPGEPGVVLSTAHPAKFPEVV 418 (462)
T ss_pred HHhh----CCCCCEEEEecCCccCCHHHH
Confidence 8863 245689999999999998763
No 83
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-34 Score=252.92 Aligned_cols=289 Identities=20% Similarity=0.209 Sum_probs=228.6
Q ss_pred hhHHHhhhhCCCCceecccccCCCCceEEEEeCCCCC--CCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCC--ChhHH
Q 020528 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEP--CSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTS--GNTGI 83 (325)
Q Consensus 8 ~~~~i~~~~~~TPL~~~~~l~~~~~~~l~~K~E~~np--tGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ss--GN~g~ 83 (325)
...++....++||+.+++++++.+|.+||+|||++.+ .|.+|.|...+++.+|.++|. +++|+.++ +||.+
T Consensus 5 rf~R~~l~~~pTPiq~L~rls~~lg~eiYiKRDD~t~l~~gGNK~RKLefll~eal~~g~-----dTlvT~GgiQSNh~r 79 (323)
T COG2515 5 RFPRMELIFGPTPIQKLPRLSAHLGVEIYIKRDDLTGLAFGGNKIRKLEFLLGEALRKGA-----DTLVTYGGIQSNHVR 79 (323)
T ss_pred cCCccccCCCCChhhhHHHHHHhcCeEEEEEcccccccccCccHHHHHHHHHhhhhhcCC-----cEEEEecccchhHHH
Confidence 3456667778999999999999989999999999966 789999999999999999887 78999888 99999
Q ss_pred HHHHHHHHcCCeEEEEecCCC----CHHHHHHHHHcCCEEEEeCCCCCh--hHHHHHHHHHHHhCCCeEEeCCC-C-CCc
Q 020528 84 GLAFMAAAKGYRLIITMPASM----SLERRMVLLAFGAELVLTDPARGM--KGAVQKAEEIRDKTPNSYVLQQF-E-NPA 155 (325)
Q Consensus 84 alA~~a~~~g~~~~i~~p~~~----~~~~~~~~~~~Ga~v~~~~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~-~-n~~ 155 (325)
++|++|+++|++|+.++..-. -..+....+.+|+++..++...++ +...+..++..++.++..|+.|- . ||.
T Consensus 80 ~tAavA~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~~e~~~~~g~kpyvIp~GG~~~~ 159 (323)
T COG2515 80 QTAAVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEELAEEVRKQGGKPYVIPEGGSSPL 159 (323)
T ss_pred HHHHHHHhcCCcEEEEEeccccccccccchhhhhhcCceEEEecCCCChhhchhhHHHHHHHHhcCCCCcEeccCCcCcc
Confidence 999999999999999987654 234667778899999999976555 33334444444444444444333 2 333
Q ss_pred chHhHHhchHHHHHhhhC--CCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCC---CCCcccccCC
Q 020528 156 NPKIHYETTGPEIWKGTG--GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGK---PGPHKIQGIG 230 (325)
Q Consensus 156 ~~~~g~~t~~~Ei~~ql~--~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~---~~~~~~~gl~ 230 (325)
...||...+.||.+|.. -++|+||+++|+|||.||+..++....++.+|||+....++.....+ .....++.++
T Consensus 160 -g~lGyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~ViG~~v~~~~~~~~~qv~~L~~~~a~~~~ 238 (323)
T COG2515 160 -GALGYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVSADPEKLKEQVLNLAQATAELLG 238 (323)
T ss_pred -ccccHHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHhhhccCCCceEEEeecCCHHHHHHHHHHHHHHHHHHcC
Confidence 24589999999999986 57999999999999999999999999999999999887775432110 0111222222
Q ss_pred CC-CCccccccccCCeEEEeCHHHHHHHHHHHHHHcCCeeec-chHHHHHHHHHHHhcCC-CCCCEEEEEeCCCC
Q 020528 231 AG-FIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGI-SSGAATAAAIQIAKRPE-NAGKLIVVVFPSFG 302 (325)
Q Consensus 231 ~~-~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p-~sg~a~aa~~~~~~~~~-~~~~~vv~i~t~~g 302 (325)
.. ...+.++.++....|.++.+|.+++.+.+++.||+.++| ++|+++.++++++++++ .++++|++|||+|.
T Consensus 239 ~~~~~~v~~~~dy~~~~Yg~p~~e~~e~i~~~~~~eGillDpVYtgKam~Glid~~~k~~f~~~~~vLfiHtGG~ 313 (323)
T COG2515 239 LGSEADVLLSDDYHHPGYGKPNEEDIEAIKLLARLEGILLDPVYTGKAMYGLIDLARKGEFPDGSPVLFIHTGGA 313 (323)
T ss_pred CCCCceEEEEecccCCccCCcCHHHHHHHHHHHHhhCcccccccchHHHHHHHHHHhcccCCCCCceEEEEcCCc
Confidence 22 223345567778889999999999999999999999999 89999999999998877 56778999998774
No 84
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=100.00 E-value=2.4e-33 Score=245.70 Aligned_cols=295 Identities=25% Similarity=0.298 Sum_probs=223.2
Q ss_pred hhh-CCCCceecccccCCC--CceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEe-cCCChhHHHHHHHH
Q 020528 14 ELI-GKTPLVYLNRIVDGC--VARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIE-PTSGNTGIGLAFMA 89 (325)
Q Consensus 14 ~~~-~~TPL~~~~~l~~~~--~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~-~ssGN~g~alA~~a 89 (325)
..+ .+|||++..+|.+.+ .++||+|.|+..||||||.+.|...+-.++..|. +.|++ .+.|.+|.|++.+|
T Consensus 73 ~~~gRPTPL~RA~~LE~~L~tparIYyK~Eg~tptGSHKiNTAlAqaYyak~eg~-----~rl~TETGAGQWGsAlslA~ 147 (432)
T COG1350 73 LQIGRPTPLIRAKNLEEALGTPARIYYKYEGVTPTGSHKINTALAQAYYAKKEGA-----KRLTTETGAGQWGSALSLAA 147 (432)
T ss_pred HHhCCCCchhhhhhHHHHhCCCcEEEEEecccCCCCCCCcchHHHHHHHHHhcCc-----eeeecccCCchHHHHHHHHH
Confidence 445 589999999998554 4799999999999999999999999999999997 44554 45599999999999
Q ss_pred HHcCCeEEEEecCC---CCHHHHHHHHHcCCEEEEeCCCCC----------------hhHHHHHHHHHHHhCCCe-EEeC
Q 020528 90 AAKGYRLIITMPAS---MSLERRMVLLAFGAELVLTDPARG----------------MKGAVQKAEEIRDKTPNS-YVLQ 149 (325)
Q Consensus 90 ~~~g~~~~i~~p~~---~~~~~~~~~~~~Ga~v~~~~~~~~----------------~~~~~~~a~~~~~~~~~~-~~~~ 149 (325)
+.+|++|+|||-+. ..+.++.+|+.|||+|+..+.+.+ .--++..|.+.+-++++. |.+.
T Consensus 148 alf~lk~~V~Mvr~Sy~qKpyRk~lM~~yGa~V~pSPS~~Te~Grk~l~e~p~hPGSLGIAISEAiE~al~~~~~kY~lG 227 (432)
T COG1350 148 ALFGLKATVFMVRVSYYQKPYRKYLMELYGAEVVPSPSELTEFGRKILKEDPDHPGSLGIAISEAIEYALKNENTKYSLG 227 (432)
T ss_pred HHhCceeEEEEEehhhhcchHHHHHHHHhCCeecCCCcchhHHHHHHHhcCCCCCchhHHHHHHHHHHHHhCCCceecch
Confidence 99999999999875 577888999999999998874321 112566777777666544 4443
Q ss_pred CCCCCcchHhHHhchHHHHHhhh---CCCCCEEEEecCCchhHHHHHHHHHh-h--C-CCcEEEEEecCCCccccCCCCC
Q 020528 150 QFENPANPKIHYETTGPEIWKGT---GGKIDALVSGIGTGGTVTGAGKYLKE-H--N-PEIKLYGVEPVESAVLSGGKPG 222 (325)
Q Consensus 150 ~~~n~~~~~~g~~t~~~Ei~~ql---~~~~D~iv~pvG~Gg~~aGi~~~~k~-~--~-~~~~vigV~~~~~~~~~~~~~~ 222 (325)
..-|. ...||..+|+|..+|+ +..||++|.|||+|++++|+..-|-. . + ...++|+|+|..++.|..|...
T Consensus 228 SVlnh--vllhQTViGlEakkQle~~~e~PDv~igcvGGGSNfag~~yPfi~d~l~g~~~~~fiAvep~a~P~lT~GeY~ 305 (432)
T COG1350 228 SVLNH--VLLHQTVIGLEAKKQLEQAGEDPDVIIGCVGGGSNFAGLTYPFIGDKLRGKKETRFIAVEPKACPKLTKGEYR 305 (432)
T ss_pred hHHHH--HHHHHHHHhHHHHHHHHhcCCCCCEEEEeccCCCccccccchhhhhhhcCCceeEEEEeCCccCCccccceee
Confidence 33232 3679999999996665 56799999999999999999554432 2 1 1289999999999999876532
Q ss_pred Cc-----------ccccCCCCCCccccc-----------------cccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchH
Q 020528 223 PH-----------KIQGIGAGFIPGVLD-----------------VNLLDETVQISSEEAIETAKLLALKEGLLVGISSG 274 (325)
Q Consensus 223 ~~-----------~~~gl~~~~~~~~~~-----------------~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg 274 (325)
-+ ..-.|+...+|..+. ..-+-+....+.+|++++++.|++.||+...|.|+
T Consensus 306 YD~gDtagltPllKMyTlGhd~vpPpihAgGLRYHG~aPtls~L~~~Giv~a~ay~Q~Evfeaa~lFa~~EGiVPAPEsa 385 (432)
T COG1350 306 YDFGDTAGLTPLLKMYTLGHDYVPPPIHAGGLRYHGVAPTLSLLVKEGIVEARAYDQEEVFEAAVLFARTEGIVPAPESA 385 (432)
T ss_pred ccCCchhccchhhhhhccCCCccCCCcccccccccCcChHHHHHHHcCcccceecChHHHHHHHHHHHHhcCCccCCcch
Confidence 11 112445454444432 12234578899999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCC--CEEEEEeCCCCCCCcchhhhHHHHHH
Q 020528 275 AATAAAIQIAKRPENAG--KLIVVVFPSFGERYLSSVLFESVKKE 317 (325)
Q Consensus 275 ~a~aa~~~~~~~~~~~~--~~vv~i~t~~g~~~~~~~~~~~~~~~ 317 (325)
.|+.++++.+.+.+..+ +.|++-++++|..+++ -|++++.-
T Consensus 386 HAi~~aid~A~~a~~~geekvI~fnlSGHGllDL~--~Y~~yl~g 428 (432)
T COG1350 386 HAIKAAIDEALKAREEGEEKVILFNLSGHGLLDLS--AYDKYLEG 428 (432)
T ss_pred hhHHHHHHHHHhccccCceeEEEEeccCccccchh--hHHHHhhh
Confidence 99999999887766333 4555556666665555 47777654
No 85
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=100.00 E-value=7.2e-33 Score=244.62 Aligned_cols=294 Identities=23% Similarity=0.307 Sum_probs=214.3
Q ss_pred hHHHhhhhC-CCCceecccccCCC--CceEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHH
Q 020528 9 AKDVTELIG-KTPLVYLNRIVDGC--VARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGL 85 (325)
Q Consensus 9 ~~~i~~~~~-~TPL~~~~~l~~~~--~~~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~al 85 (325)
...|..++| +|||++.++|.+.+ |++||+|+|++|||||+|.+.+...+..+.+.|+ +..|.+.+.|.||.|+
T Consensus 112 ~~eiy~y~gRpspL~~AkRLte~~q~ga~IylKrEdlnh~GsHKiNnav~QallakrlGk----knviaETGAGQhGvat 187 (477)
T KOG1395|consen 112 FLEIYKYLGRPSPLIRAKRLTEHCQTGARIYLKREDLNHTGSHKINNAVAQALLAKRLGK----KNVIAETGAGQHGVAT 187 (477)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHhCCCCEEEEEecCCCccccCCcccHHHHHHHHHHhcc----cceeeccCCCccchHH
Confidence 344554565 59999999998654 5899999999999999999999999999999998 3566677779999999
Q ss_pred HHHHHHcCCeEEEEecCC---CCHHHHHHHHHcCCEEEEeCC-CCChhHHHHHHHHHHHhC-CCeEEeCC-CCC----Cc
Q 020528 86 AFMAAAKGYRLIITMPAS---MSLERRMVLLAFGAELVLTDP-ARGMKGAVQKAEEIRDKT-PNSYVLQQ-FEN----PA 155 (325)
Q Consensus 86 A~~a~~~g~~~~i~~p~~---~~~~~~~~~~~~Ga~v~~~~~-~~~~~~~~~~a~~~~~~~-~~~~~~~~-~~n----~~ 155 (325)
|.+|++.|++|+|+|-.. .+..++-+|+.+||+|+.+.. .....++-..+.++.-.+ +-.+|+.. -.. |.
T Consensus 188 A~a~a~FGl~C~v~mgAed~~rqalnvfrmrllGAkV~pv~sGt~tLrda~sea~r~wvt~~ett~y~~gs~~gphp~pt 267 (477)
T KOG1395|consen 188 ATACAKFGLDCTVYMGAEDYRRQALNVFRMRLLGAKVHPVTSGTRTLRDATSEAGRLWVTNSETTHYAAGSAIGPHPYPT 267 (477)
T ss_pred HHHHHHhCCceEEEechhHHHHHHHHHHHHHHhCceEeecCCCceehhcccchhhhhhhhhhheeeeeecccCCCCCcHH
Confidence 999999999999999875 577889999999999999874 234455555554443222 22344321 111 11
Q ss_pred chHhHHhchHHHHHhhh----CCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcc--------ccCCCCC-
Q 020528 156 NPKIHYETTGPEIWKGT----GGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV--------LSGGKPG- 222 (325)
Q Consensus 156 ~~~~g~~t~~~Ei~~ql----~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~--------~~~~~~~- 222 (325)
....-+.+|+-|-..|. +..||.||.|+|+|++.+|++.-|.. ...++.|+|+..+... +..+..+
T Consensus 268 ~vr~fhsvIg~Et~~Q~me~~g~~PD~vvaCvGGGSN~~Glf~pF~~-dk~v~~igveaagdg~dtp~hsatltagd~Gv 346 (477)
T KOG1395|consen 268 VVRTFHSVIGKETKIQQMEKFGKLPDAVVACVGGGSNSAGLFSPFIR-DKSVGMIGVEAAGDGVDTPKHSATLTAGDVGV 346 (477)
T ss_pred HHHHHHHHHhHHHHHHHHHHhCCCCCeEEEeccCCCccccccchhhc-cchhheeeeeecccccCCcchhceeecccccc
Confidence 12235678888876664 35699999999999999999877764 3347889998877642 1112111
Q ss_pred ------------------Cccc-ccCCC-CCCcccccc--ccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHH
Q 020528 223 ------------------PHKI-QGIGA-GFIPGVLDV--NLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAA 280 (325)
Q Consensus 223 ------------------~~~~-~gl~~-~~~~~~~~~--~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~ 280 (325)
++.+ .||.- +.-|..-.. .-.-+++.|+|.|++++.+++++.|||+..|.+..|+++.
T Consensus 347 ~hG~~ty~lq~~dGqi~~phsIsAGLdYpGvgPels~~k~~grae~isitd~eclegfk~~srlEGIIPAlEssHAva~~ 426 (477)
T KOG1395|consen 347 FHGVTTYVLQDTDGQIFDPHSISAGLDYPGVGPELSHLKETGRAEFISITDAECLEGFKQLSRLEGIIPALESSHAVAGE 426 (477)
T ss_pred cccceeeeeeccCCccccCCccccCCCCCCCChhHHHHHhcCceeEEecChHHHHHHHHHHHHhcccccCCchhhHHHHH
Confidence 1111 12211 111221111 2235699999999999999999999999999999999998
Q ss_pred HHHHhcCCCCCCEEEEEeCCCCCCCcch
Q 020528 281 IQIAKRPENAGKLIVVVFPSFGERYLSS 308 (325)
Q Consensus 281 ~~~~~~~~~~~~~vv~i~t~~g~~~~~~ 308 (325)
.++.+.. .+++.+|+-+|+.|+|++..
T Consensus 427 ~~lck~l-~~~k~ivi~~sGrGdkDvqS 453 (477)
T KOG1395|consen 427 AELCKTL-PEDKVIVINISGRGDKDVQS 453 (477)
T ss_pred HHhcccc-CCCcEEEEEecCCCCchHHH
Confidence 8877654 47889999999999988764
No 86
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=99.96 E-value=6.9e-28 Score=209.68 Aligned_cols=287 Identities=21% Similarity=0.238 Sum_probs=232.0
Q ss_pred hhhCCCCceeccccc----C----CCCceEEEEeCCCCC-CCChhhHHHHHHHH-H----HHHhCCCCCC----------
Q 020528 14 ELIGKTPLVYLNRIV----D----GCVARIAAKLEMMEP-CSSVKDRIGYSMIA-D----AEEKGLIRPG---------- 69 (325)
Q Consensus 14 ~~~~~TPL~~~~~l~----~----~~~~~l~~K~E~~np-tGS~K~R~a~~~~~-~----a~~~g~~~~g---------- 69 (325)
.++..+||+..+.+. + ....++|+|++.+.| +||+|.|+-.+-+. + |.+.|.+.-.
T Consensus 74 ~GiIES~lv~i~~mq~~Le~~Y~~~i~G~llLK~DshLpIsGSIKARGGIYEVL~hAE~LAle~Gll~~~DDYs~L~~~~ 153 (443)
T COG3048 74 GGIIESPLVEIPAMQKRLEKEYQQPIPGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLEDDYSILLSEE 153 (443)
T ss_pred CCeeccchhhhHHHHHHHHHHhcCCCCcceeeeccCCCCcccceeccccHHHHHHHHHHHHHhcCcccccchHHHhhcHH
Confidence 456678998876654 1 123589999999999 89999999877653 3 4566765322
Q ss_pred ------CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCC
Q 020528 70 ------ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTP 143 (325)
Q Consensus 70 ------~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~ 143 (325)
...|.+.|+||.|.|+...++.+|++++|.|+.++..+|+.++|+.|.+|+.+.. +|..+.+..++.++..|
T Consensus 154 f~~FFs~ysIaVGSTGNLGlSIGI~sA~lGF~vtVHMSADAr~WKKd~LRs~gV~ViEYe~--DY~~AVeeGRk~a~~DP 231 (443)
T COG3048 154 FKDFFSRYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARAWKKDKLRSHGVTVVEYEQ--DYGVAVEEGRKEAESDP 231 (443)
T ss_pred HHHHHHhheEeecccCccceehhhhhhhhcceEEEEecchHHHHHHHHHHhcCceEEEecc--hhhHHHHHhhhhhccCC
Confidence 4568899999999999999999999999999999999999999999999999984 78899999999999988
Q ss_pred CeEEeCCCCCCcchHhHHhchHHHHHhhhC--------CCCCEEEEecCCchhHHHHHHHHHhhCC-CcEEEEEecCCCc
Q 020528 144 NSYVLQQFENPANPKIHYETTGPEIWKGTG--------GKIDALVSGIGTGGTVTGAGKYLKEHNP-EIKLYGVEPVESA 214 (325)
Q Consensus 144 ~~~~~~~~~n~~~~~~g~~t~~~Ei~~ql~--------~~~D~iv~pvG~Gg~~aGi~~~~k~~~~-~~~vigV~~~~~~ 214 (325)
.+|+++. +|+.+...||...+..+-.|+. ..|-.|..|+|-||...|++.++|..+. ++.++-+||..+|
T Consensus 232 ~c~FiDD-E~S~~LFLGYaVAa~Rlk~Q~d~~gi~vd~ehPLfVylPCGVGGgPGGVafGLKl~fgd~VhcfFaEPthsP 310 (443)
T COG3048 232 NCFFIDD-ENSRTLFLGYAVAAQRLKKQFDEQGIVVDAEHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSP 310 (443)
T ss_pred ceEEecc-cchhhhhhhHHHHHHHHHHHHHhcCceecCCCceEEEeecCCCCCcchhhhhhHhhhcCceEEEEecCCCCh
Confidence 8999987 4555557899999999999873 2466899999999999999999999874 6999999999999
Q ss_pred cccCC---------------CCCCcccccCCCCCCccccc----cccCCeEEEeCHHHHHHHHHHHHHHcCCeeecchHH
Q 020528 215 VLSGG---------------KPGPHKIQGIGAGFIPGVLD----VNLLDETVQISSEEAIETAKLLALKEGLLVGISSGA 275 (325)
Q Consensus 215 ~~~~~---------------~~~~~~~~gl~~~~~~~~~~----~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~ 275 (325)
+|.-| ....+.++|++++. |+-+. ..++|+.+.|+|+..++...+|++.||+.+|||+-+
T Consensus 311 cMlLGv~tGlHe~ISVqdiGidn~TaADGLAVgR-pSgfVgr~me~lL~G~~TvdD~~ly~lL~~L~~~e~~rlEPSalA 389 (443)
T COG3048 311 CMLLGVYTGLHEQISVQDIGIDNLTAADGLAVGR-PSGFVGRAMERLLDGYYTVDDQTLYDLLGWLAQEEGIRLEPSALA 389 (443)
T ss_pred HHHHhhhhccccceeeEeecccccccccceeecC-ccchHHHHHHHHhCCcEEechHHHHHHHHHHHHhcCcccCchhhh
Confidence 98532 22345668888776 44433 457899999999999999999999999999999888
Q ss_pred HHHHHHHHHhcC------------CCCCCEEEEEeCCCCCC
Q 020528 276 ATAAAIQIAKRP------------ENAGKLIVVVFPSFGER 304 (325)
Q Consensus 276 a~aa~~~~~~~~------------~~~~~~vv~i~t~~g~~ 304 (325)
+.++..++.+.. .....+-++..|+||-.
T Consensus 390 gm~Gp~~~~~~~~g~~~~~~~~~~~~~natHlvWaTGG~MV 430 (443)
T COG3048 390 GMAGPQRVCASVEGYRYRHGFSAEQLNNATHLVWATGGGMV 430 (443)
T ss_pred cccCcceeeechhHHHHHhhchhhhhcCeeEEEEecCCCcC
Confidence 777766543211 12344667888887754
No 87
>KOG2616 consensus Pyridoxalphosphate-dependent enzyme/predicted threonine synthase [Amino acid transport and metabolism]
Probab=96.29 E-value=0.007 Score=51.58 Aligned_cols=63 Identities=11% Similarity=0.167 Sum_probs=53.5
Q ss_pred EEEeCHHHHHHHHHHHHHHcCCeeecchHHHHHHHHHHHhcCCCCCCEEEEEeCCCCCCCcchh
Q 020528 246 TVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSV 309 (325)
Q Consensus 246 ~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~t~~g~~~~~~~ 309 (325)
...||++|+.+++...|+..+++++|++|.|+-...+...+.. +.-.++++.|.+..||-+.+
T Consensus 148 se~vS~ee~~~ti~k~yes~~YiLdPHTAVav~~~~r~idkt~-ps~~~i~lstAh~aKFa~AV 210 (266)
T KOG2616|consen 148 SERVSNEETTQTIKKIYESNHYILDPHTAVAVNYHYRQIDKTQ-PSIPYICLSTAHPAKFAEAV 210 (266)
T ss_pred hhhcCcHHHHHHHHHHhccCCeeecCchHHHHHHHHHHHhccC-CCCceEEecccChhhhhHHH
Confidence 4578999999999999999999999999999998888777653 45678888888888876653
No 88
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=87.39 E-value=11 Score=32.53 Aligned_cols=50 Identities=28% Similarity=0.401 Sum_probs=41.9
Q ss_pred EEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q 020528 73 LIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 123 (325)
Q Consensus 73 vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 123 (325)
+|+..+|+.|..++.+....+.+++++++.. +....+.++..|++++..+
T Consensus 2 ~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~-~~~~~~~l~~~g~~vv~~d 51 (233)
T PF05368_consen 2 LVTGATGNQGRSVVRALLSAGFSVRALVRDP-SSDRAQQLQALGAEVVEAD 51 (233)
T ss_dssp EEETTTSHHHHHHHHHHHHTTGCEEEEESSS-HHHHHHHHHHTTTEEEES-
T ss_pred EEECCccHHHHHHHHHHHhCCCCcEEEEecc-chhhhhhhhcccceEeecc
Confidence 5778899999999999888999999998876 5566778889999998665
No 89
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=86.56 E-value=6 Score=35.86 Aligned_cols=86 Identities=24% Similarity=0.284 Sum_probs=60.9
Q ss_pred eEEEEeCCCCC-----CCChhhHHHHHHHHHHHHhCCCCCCCeEEE-ecCCChhHHHHHHHHHHcCCeEEEEecCCCC-H
Q 020528 34 RIAAKLEMMEP-----CSSVKDRIGYSMIADAEEKGLIRPGESVLI-EPTSGNTGIGLAFMAAAKGYRLIITMPASMS-L 106 (325)
Q Consensus 34 ~l~~K~E~~np-----tGS~K~R~a~~~~~~a~~~g~~~~g~~~vv-~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~ 106 (325)
+-++|.+..-| |-|.---.|+.++.+-.+.. +|.. |+ -++.+--|.++--.|+.+||+.+=+++.... .
T Consensus 124 ~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~---~GD~-vIQNganS~VG~~ViQlaka~GiktinvVRdR~~ie 199 (354)
T KOG0025|consen 124 SDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLN---KGDS-VIQNGANSGVGQAVIQLAKALGIKTINVVRDRPNIE 199 (354)
T ss_pred cceEEcCCcCChhhhheeccCchHHHHHHHHHHhcC---CCCe-eeecCcccHHHHHHHHHHHHhCcceEEEeecCccHH
Confidence 46777777555 55555557888888877643 3533 44 2333445677777899999999988887644 5
Q ss_pred HHHHHHHHcCCEEEEeC
Q 020528 107 ERRMVLLAFGAELVLTD 123 (325)
Q Consensus 107 ~~~~~~~~~Ga~v~~~~ 123 (325)
+..++++.+||+-++.+
T Consensus 200 el~~~Lk~lGA~~ViTe 216 (354)
T KOG0025|consen 200 ELKKQLKSLGATEVITE 216 (354)
T ss_pred HHHHHHHHcCCceEecH
Confidence 55778999999998887
No 90
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=85.22 E-value=8.1 Score=32.13 Aligned_cols=120 Identities=13% Similarity=0.097 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHcCCeE-EEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHh
Q 020528 81 TGIGLAFMAAAKGYRL-IITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKI 159 (325)
Q Consensus 81 ~g~alA~~a~~~g~~~-~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~ 159 (325)
-|..+..+++.+|.++ .-+.+.+.-..-+..+...|-+|.+++++ .....+.+..+.+..++.-.+..+ ++.....
T Consensus 12 DG~~i~~~~~~~g~~~~~rv~g~dl~~~l~~~~~~~~~~ifllG~~--~~~~~~~~~~l~~~yP~l~ivg~~-~g~f~~~ 88 (172)
T PF03808_consen 12 DGMPIVWAARLLGRPLPERVTGSDLFPDLLRRAEQRGKRIFLLGGS--EEVLEKAAANLRRRYPGLRIVGYH-HGYFDEE 88 (172)
T ss_pred CCHHHHHHHHHcCCCCCcccCHHHHHHHHHHHHHHcCCeEEEEeCC--HHHHHHHHHHHHHHCCCeEEEEec-CCCCChh
Confidence 3567888999999887 33333334455666777889999999964 344445555666666654333222 2211111
Q ss_pred HHhchHHHHHhhhC-CCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEE
Q 020528 160 HYETTGPEIWKGTG-GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGV 208 (325)
Q Consensus 160 g~~t~~~Ei~~ql~-~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV 208 (325)
-. .+|++++. ..||.|+++.|+.--=.=+. ..+...+..-+++|
T Consensus 89 ~~----~~i~~~I~~~~pdiv~vglG~PkQE~~~~-~~~~~l~~~v~i~v 133 (172)
T PF03808_consen 89 EE----EAIINRINASGPDIVFVGLGAPKQERWIA-RHRQRLPAGVIIGV 133 (172)
T ss_pred hH----HHHHHHHHHcCCCEEEEECCCCHHHHHHH-HHHHHCCCCEEEEE
Confidence 22 23444432 46999999999875443223 33333444444444
No 91
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=84.63 E-value=14 Score=34.27 Aligned_cols=59 Identities=24% Similarity=0.364 Sum_probs=41.4
Q ss_pred HHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q 020528 60 AEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 122 (325)
Q Consensus 60 a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~ 122 (325)
+..+..+.+|.+.+|... |..|.+++..++.+|.+++++ +.++.+++.++.+|++.++.
T Consensus 158 a~~~~~~~~g~~VlV~G~-G~vG~~a~~~a~~~G~~vi~~---~~~~~~~~~~~~~Ga~~~i~ 216 (349)
T TIGR03201 158 AAVQAGLKKGDLVIVIGA-GGVGGYMVQTAKAMGAAVVAI---DIDPEKLEMMKGFGADLTLN 216 (349)
T ss_pred HHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEE---cCCHHHHHHHHHhCCceEec
Confidence 334455677766666555 999999999999999974433 33566788888899865443
No 92
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=84.32 E-value=17 Score=36.90 Aligned_cols=96 Identities=18% Similarity=0.284 Sum_probs=61.3
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCC
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQ 150 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 150 (325)
..++.++.|..|+.+|..-...|++++++ +.++.+++.++.+|.+++.=|..
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvI---D~d~~~v~~~~~~g~~v~~GDat------------------------- 452 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVL---DHDPDHIETLRKFGMKVFYGDAT------------------------- 452 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEE---ECCHHHHHHHHhcCCeEEEEeCC-------------------------
Confidence 45788999999999999888889988776 33566666667666665444431
Q ss_pred CCCCcchHhHHhchHHHHHhhhC-CCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEE
Q 020528 151 FENPANPKIHYETTGPEIWKGTG-GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGV 208 (325)
Q Consensus 151 ~~n~~~~~~g~~t~~~Ei~~ql~-~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV 208 (325)
. .|++++.+ .+.|.+|+++..--.-.-+....|+.+|+.++++-
T Consensus 453 -----~---------~~~L~~agi~~A~~vvv~~~d~~~n~~i~~~ar~~~p~~~iiaR 497 (621)
T PRK03562 453 -----R---------MDLLESAGAAKAEVLINAIDDPQTSLQLVELVKEHFPHLQIIAR 497 (621)
T ss_pred -----C---------HHHHHhcCCCcCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 1 12233221 24566676666644444456666777777776653
No 93
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=84.28 E-value=18 Score=36.56 Aligned_cols=97 Identities=14% Similarity=0.211 Sum_probs=65.5
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCC
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQ 150 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 150 (325)
.+++.++.|..|+.+|..-...|++++++= .++.+++.++.+|.+++.=+.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID---~d~~~v~~~~~~g~~v~~GDa-------------------------- 451 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLE---RDISAVNLMRKYGYKVYYGDA-------------------------- 451 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEE---CCHHHHHHHHhCCCeEEEeeC--------------------------
Confidence 357778899999999988888888877662 245556666665554433332
Q ss_pred CCCCcchHhHHhchHHHHHhhhC-CCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEe
Q 020528 151 FENPANPKIHYETTGPEIWKGTG-GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVE 209 (325)
Q Consensus 151 ~~n~~~~~~g~~t~~~Ei~~ql~-~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~ 209 (325)
.+ .|++++.+ .+.|.+|++++.--.-.-+....|+.+|+.+|++-.
T Consensus 452 ----t~---------~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~p~~~IiaRa 498 (601)
T PRK03659 452 ----TQ---------LELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQHFPHLHILARA 498 (601)
T ss_pred ----CC---------HHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 11 13344332 356888888888666666777888889999988764
No 94
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=84.25 E-value=8 Score=35.90 Aligned_cols=52 Identities=13% Similarity=0.218 Sum_probs=40.2
Q ss_pred CCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 020528 67 RPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119 (325)
Q Consensus 67 ~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 119 (325)
.+|.+.+|. +.|..|...+..++.+|.+++++.+...++.|++.++.+|++.
T Consensus 171 ~~g~~vlI~-G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~ 222 (355)
T cd08230 171 WNPRRALVL-GAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATY 222 (355)
T ss_pred CCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Confidence 456566665 5689999999999999998666655445678888999999985
No 95
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=83.99 E-value=17 Score=32.87 Aligned_cols=57 Identities=25% Similarity=0.299 Sum_probs=42.6
Q ss_pred HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 020528 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (325)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 121 (325)
+...+.+|.+.+|...+|..|.++...|+.+|.+++++. .+..+...++.+|++-++
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~---~s~~~~~~l~~~Ga~~vi 193 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCA---GSDDKVAWLKELGFDAVF 193 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHcCCCEEE
Confidence 445567787777877789999999999999999855443 356678888888885433
No 96
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=83.37 E-value=14 Score=34.14 Aligned_cols=58 Identities=28% Similarity=0.473 Sum_probs=42.8
Q ss_pred HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q 020528 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 122 (325)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~ 122 (325)
+.+.+++|.+.+|.+.+|.-|..+.-.|+.+|...++. .. +..|.+.++.+||+.+..
T Consensus 136 ~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~-~~--s~~k~~~~~~lGAd~vi~ 193 (326)
T COG0604 136 DRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAV-VS--SSEKLELLKELGADHVIN 193 (326)
T ss_pred HhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEE-ec--CHHHHHHHHhcCCCEEEc
Confidence 34667888899999999999999988899999833333 32 346666888888865544
No 97
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=83.01 E-value=18 Score=34.41 Aligned_cols=56 Identities=25% Similarity=0.337 Sum_probs=41.7
Q ss_pred HHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 020528 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119 (325)
Q Consensus 61 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 119 (325)
.++..+.+|.+.+| ..+|..|.+++..|+.+|.+.+++.. ....++...+.+|++.
T Consensus 178 ~~~~~~~~g~~VlV-~G~G~iG~~aiqlAk~~Ga~~vi~~d--~~~~r~~~a~~~Ga~~ 233 (393)
T TIGR02819 178 AVTAGVGPGSTVYI-AGAGPVGLAAAASAQLLGAAVVIVGD--LNPARLAQARSFGCET 233 (393)
T ss_pred HHhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCceEEEeC--CCHHHHHHHHHcCCeE
Confidence 34455677766666 66788999999999999998766433 3467888889999974
No 98
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=82.44 E-value=24 Score=35.18 Aligned_cols=97 Identities=23% Similarity=0.156 Sum_probs=60.9
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCC
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQ 150 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 150 (325)
.+++..+.|+.|+.+|..-+..|.+++++=. ++++.+.++.+|.+++.-+..
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~---d~~~~~~~~~~g~~~i~GD~~------------------------- 469 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIET---SRTRVDELRERGIRAVLGNAA------------------------- 469 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEEC---CHHHHHHHHHCCCeEEEcCCC-------------------------
Confidence 4577889999999999888888888766622 345555555555554443321
Q ss_pred CCCCcchHhHHhchHHHHHhhhC-CCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEe
Q 020528 151 FENPANPKIHYETTGPEIWKGTG-GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVE 209 (325)
Q Consensus 151 ~~n~~~~~~g~~t~~~Ei~~ql~-~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~ 209 (325)
+ .|++++.+ .+.|.+++.++.-..-.-+....++.+|+.++++..
T Consensus 470 -----~---------~~~L~~a~i~~a~~viv~~~~~~~~~~iv~~~~~~~~~~~iiar~ 515 (558)
T PRK10669 470 -----N---------EEIMQLAHLDCARWLLLTIPNGYEAGEIVASAREKRPDIEIIARA 515 (558)
T ss_pred -----C---------HHHHHhcCccccCEEEEEcCChHHHHHHHHHHHHHCCCCeEEEEE
Confidence 1 12333322 356777777776554444555667778888888753
No 99
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=81.99 E-value=9.4 Score=34.96 Aligned_cols=61 Identities=25% Similarity=0.195 Sum_probs=44.2
Q ss_pred HhCCCCCCCeEEEecCC--ChhHHHHHHHHHHcCCeEEEEecCC--CCHHHHHHHHHcCCEEEEeC
Q 020528 62 EKGLIRPGESVLIEPTS--GNTGIGLAFMAAAKGYRLIITMPAS--MSLERRMVLLAFGAELVLTD 123 (325)
Q Consensus 62 ~~g~~~~g~~~vv~~ss--GN~g~alA~~a~~~g~~~~i~~p~~--~~~~~~~~~~~~Ga~v~~~~ 123 (325)
..|.++ |.+..+++-. +|.+.|+...++++|++++++.|+. .+...+..++..|+++..++
T Consensus 144 ~~g~l~-g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~ 208 (301)
T TIGR00670 144 EFGRLD-GLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETE 208 (301)
T ss_pred HhCCCC-CCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEEC
Confidence 346543 3243333333 6999999999999999999999997 35566677777899987775
No 100
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=80.66 E-value=40 Score=33.33 Aligned_cols=50 Identities=18% Similarity=0.138 Sum_probs=40.3
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 123 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 123 (325)
.+|+..+.|..|.+.+..|+.+|-.++++ +..+.++++.+.+|++.+.++
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~---D~~~~rle~aeslGA~~v~i~ 215 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAF---DTRPEVAEQVESMGAEFLELD 215 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEE---eCCHHHHHHHHHcCCeEEEec
Confidence 45777889999999999999999853333 457888999999999966554
No 101
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=79.99 E-value=19 Score=31.52 Aligned_cols=72 Identities=22% Similarity=0.273 Sum_probs=45.2
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC-CChhHHHHHHHHHHHh
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRDK 141 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 141 (325)
++.+|+..+|.-|.++|......|.+++++-...........+...|.++..+..+ .+.++..+...+..++
T Consensus 9 k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (260)
T PRK12823 9 KVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEA 81 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 36789999999999999999999998776644322223334555667776654432 2334444444544443
No 102
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=79.87 E-value=17 Score=30.17 Aligned_cols=120 Identities=18% Similarity=0.149 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHcCCeEEEEecC-CCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHh
Q 020528 81 TGIGLAFMAAAKGYRLIITMPA-SMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKI 159 (325)
Q Consensus 81 ~g~alA~~a~~~g~~~~i~~p~-~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~ 159 (325)
-|..+.++++.+|.+..--++. +.-..-++.+...+.+|.++++. .+...+.+..+.++.++.-.+..++.+.. ..
T Consensus 10 DG~~l~~~~~~~~~~~~~r~~g~dl~~~ll~~~~~~~~~v~llG~~--~~~~~~~~~~l~~~yp~l~i~g~~~g~~~-~~ 86 (171)
T cd06533 10 DGIGVVWAARLLGGPLPERVTGSDLMPALLELAAQKGLRVFLLGAK--PEVLEKAAERLRARYPGLKIVGYHHGYFG-PE 86 (171)
T ss_pred CcHHHHHHHHHcCCCCCcccCcHHHHHHHHHHHHHcCCeEEEECCC--HHHHHHHHHHHHHHCCCcEEEEecCCCCC-hh
Confidence 3567888999999883222222 12344556667778999999863 33344444556666665443321111111 11
Q ss_pred HHhchHHHHHhhhC-CCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEE
Q 020528 160 HYETTGPEIWKGTG-GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGV 208 (325)
Q Consensus 160 g~~t~~~Ei~~ql~-~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV 208 (325)
.. .++++++. ..||.|+++.|.---=.=+. ..+...+..-+++|
T Consensus 87 ~~----~~i~~~I~~~~pdiv~vglG~PkQE~~~~-~~~~~l~~~v~~~v 131 (171)
T cd06533 87 EE----EEIIERINASGADILFVGLGAPKQELWIA-RHKDRLPVPVAIGV 131 (171)
T ss_pred hH----HHHHHHHHHcCCCEEEEECCCCHHHHHHH-HHHHHCCCCEEEEe
Confidence 11 12444442 46999999999866543223 34444444555555
No 103
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=79.51 E-value=15 Score=32.75 Aligned_cols=57 Identities=33% Similarity=0.354 Sum_probs=39.7
Q ss_pred HHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 020528 60 AEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119 (325)
Q Consensus 60 a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 119 (325)
+.++....+|.+.+|. +.|.-|..++..++.+|.+.++++ +.+..|.+.++.+|++.
T Consensus 112 al~~~~~~~g~~VlV~-G~G~vG~~~~~~ak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~ 168 (280)
T TIGR03366 112 ALEAAGDLKGRRVLVV-GAGMLGLTAAAAAAAAGAARVVAA--DPSPDRRELALSFGATA 168 (280)
T ss_pred HHHhccCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCcE
Confidence 3333333466565555 568899999999999999755554 34667888888888854
No 104
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=79.29 E-value=55 Score=30.53 Aligned_cols=50 Identities=22% Similarity=0.254 Sum_probs=40.0
Q ss_pred EEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH-cCCEEEEeC
Q 020528 72 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLA-FGAELVLTD 123 (325)
Q Consensus 72 ~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~-~Ga~v~~~~ 123 (325)
+++..+.|.-|...+..++.+|...+|++ +.++.++++.+. .|++++...
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~--d~~~~Rl~~A~~~~g~~~~~~~ 221 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVV--DRSPERLELAKEAGGADVVVNP 221 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEe--CCCHHHHHHHHHhCCCeEeecC
Confidence 68889999999999999999999888887 446777777766 666665555
No 105
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=79.21 E-value=41 Score=29.04 Aligned_cols=33 Identities=27% Similarity=0.338 Sum_probs=27.5
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCC
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS 103 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~ 103 (325)
+.+...++||-|.++|..-...|.+++|--.+.
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~ 34 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRG 34 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCC
Confidence 346677899999999999999999988875554
No 106
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=79.16 E-value=24 Score=30.09 Aligned_cols=50 Identities=20% Similarity=0.150 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHh--CCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEE
Q 020528 50 DRIGYSMIADAEEK--GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIIT 99 (325)
Q Consensus 50 ~R~a~~~~~~a~~~--g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~ 99 (325)
-+|..+.+..+.+. +-.....++++.-+.||.|..+|......|.+++++
T Consensus 6 g~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~ 57 (200)
T cd01075 6 AYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVA 57 (200)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence 36777777777655 222222356777888999999999999999887743
No 107
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=78.40 E-value=22 Score=32.56 Aligned_cols=56 Identities=27% Similarity=0.391 Sum_probs=41.3
Q ss_pred HHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 020528 60 AEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119 (325)
Q Consensus 60 a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 119 (325)
+.+...+.++.+.+|...+|..|.+++..|+.+|.+++++.+ +. +...++.+|++.
T Consensus 169 ~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~---~~-~~~~~~~~g~~~ 224 (350)
T cd08274 169 MLERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAG---AA-KEEAVRALGADT 224 (350)
T ss_pred HHhhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeC---ch-hhHHHHhcCCeE
Confidence 345566677877777777799999999999999999655543 22 666667788863
No 108
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=77.69 E-value=19 Score=25.34 Aligned_cols=49 Identities=20% Similarity=0.096 Sum_probs=37.0
Q ss_pred EEecCCChhHHHHHHHHHHcCCeEEEEecCCCC---------HHHHHHHHHcCCEEEE
Q 020528 73 LIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS---------LERRMVLLAFGAELVL 121 (325)
Q Consensus 73 vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~---------~~~~~~~~~~Ga~v~~ 121 (325)
++.-++|..|.-+|.+.+.+|.+++++.+.+.. ..-.+.++..|.+++.
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 566789999999999999999999999886521 1224456666776654
No 109
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=77.11 E-value=36 Score=31.17 Aligned_cols=55 Identities=25% Similarity=0.267 Sum_probs=41.6
Q ss_pred HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH-cCCEE
Q 020528 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLA-FGAEL 119 (325)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~-~Ga~v 119 (325)
+.+.+++|.+.+|.+.+|.-|.+++..|+.+|.++++.. .+..+.+.++. +|++-
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~---~~~~~~~~~~~~lGa~~ 200 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSA---GSDEKVDLLKNKLGFDD 200 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHhcCCce
Confidence 345677887888888789999999999999999855443 24667777777 88853
No 110
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=76.73 E-value=49 Score=28.57 Aligned_cols=90 Identities=10% Similarity=0.090 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHH
Q 020528 52 IGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGA 131 (325)
Q Consensus 52 ~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~ 131 (325)
-+..++....+-|. ...=|+.+|=....++...++.+. ++.|=.-.-.+.+..++....||+.++.++.. .+
T Consensus 26 ~a~~~a~Ali~gGi----~~IEITl~sp~a~e~I~~l~~~~p-~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~~~--~e- 97 (211)
T COG0800 26 EALPLAKALIEGGI----PAIEITLRTPAALEAIRALAKEFP-EALIGAGTVLNPEQARQAIAAGAQFIVSPGLN--PE- 97 (211)
T ss_pred HHHHHHHHHHHcCC----CeEEEecCCCCHHHHHHHHHHhCc-ccEEccccccCHHHHHHHHHcCCCEEECCCCC--HH-
Confidence 34455555666665 122367777778888888888888 55554444468899999999999999998632 22
Q ss_pred HHHHHHHHHhCCCeEEeCCCCC
Q 020528 132 VQKAEEIRDKTPNSYVLQQFEN 153 (325)
Q Consensus 132 ~~~a~~~~~~~~~~~~~~~~~n 153 (325)
..+.+.+. +..+++.-.+
T Consensus 98 ---v~~~a~~~-~ip~~PG~~T 115 (211)
T COG0800 98 ---VAKAANRY-GIPYIPGVAT 115 (211)
T ss_pred ---HHHHHHhC-CCcccCCCCC
Confidence 23334444 5556544433
No 111
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=76.72 E-value=20 Score=32.58 Aligned_cols=57 Identities=23% Similarity=0.351 Sum_probs=42.5
Q ss_pred HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 020528 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (325)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 121 (325)
+.+.+++|.+.+|.+.+|--|.+++..|+..|.++++..+ +..+...++.+|++.++
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~---s~~~~~~~~~lGa~~vi 188 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAG---SDEKVAYLKKLGFDVAF 188 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEE
Confidence 4566778877777777788999999999999997555433 46677888888885433
No 112
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=75.68 E-value=26 Score=28.04 Aligned_cols=54 Identities=31% Similarity=0.312 Sum_probs=38.6
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC----HHHHHHHHHcCCEEEEeCC
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS----LERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~----~~~~~~~~~~Ga~v~~~~~ 124 (325)
+.+|+.+++.-|.++|..-.+.|-..++++.++.+ ......++..|.++..+..
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~ 59 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIEC 59 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEES
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccccccccccc
Confidence 56888999999999999987777777777666522 2233455677787777764
No 113
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=75.64 E-value=54 Score=31.26 Aligned_cols=57 Identities=19% Similarity=0.207 Sum_probs=38.4
Q ss_pred CCCCCCChhhHHHHHHHHHHHHhCCCCCC-CeEEEecCCChhHHH--HHHHHHHcCCeEEEEe
Q 020528 41 MMEPCSSVKDRIGYSMIADAEEKGLIRPG-ESVLIEPTSGNTGIG--LAFMAAAKGYRLIITM 100 (325)
Q Consensus 41 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g-~~~vv~~ssGN~g~a--lA~~a~~~g~~~~i~~ 100 (325)
+-+|.|..+ ....++...+.+|.+..| ++.+|+..++..|.| +|.+. ..|...+++.
T Consensus 14 ~~hp~gc~~--~v~~qi~~~~~~~~~~~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~ 73 (398)
T PRK13656 14 TAHPVGCEA--NVKEQIEYVKAQGPIANGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVF 73 (398)
T ss_pred CCCCHHHHH--HHHHHHHHHHhcCCcCCCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEe
Confidence 456766543 355677777888877544 567777777777777 55566 7888776664
No 114
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=75.61 E-value=6.7 Score=32.01 Aligned_cols=42 Identities=19% Similarity=0.102 Sum_probs=33.1
Q ss_pred EEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCC
Q 020528 73 LIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGA 117 (325)
Q Consensus 73 vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga 117 (325)
|...++||+|.|+|...+..|.+++++.++ ....+.++..+-
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~---~~~~~~i~~~~~ 43 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRD---EEQIEEINETRQ 43 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSC---HHHHHHHHHHTS
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEecc---HHHHHHHHHhCC
Confidence 566789999999999999999999998774 355556655443
No 115
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=75.15 E-value=43 Score=30.79 Aligned_cols=57 Identities=25% Similarity=0.371 Sum_probs=41.2
Q ss_pred HHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 020528 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120 (325)
Q Consensus 61 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 120 (325)
.+...+.++.+.+| ...|..|.+++..|+.+|...++.+.. .+.+...++.+|++.+
T Consensus 167 ~~~~~~~~g~~vlI-~g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~v 223 (350)
T cd08256 167 VDRANIKFDDVVVL-AGAGPLGLGMIGAARLKNPKKLIVLDL--KDERLALARKFGADVV 223 (350)
T ss_pred HHhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCcEEEEEcC--CHHHHHHHHHcCCcEE
Confidence 34556677766666 666889999999999999876666554 3566777788887543
No 116
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=75.03 E-value=47 Score=30.35 Aligned_cols=57 Identities=25% Similarity=0.390 Sum_probs=37.6
Q ss_pred HhCCCCCC--CeEEEecCCChhHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHH-cCCEEEE
Q 020528 62 EKGLIRPG--ESVLIEPTSGNTGIGLAFMAAAKGY-RLIITMPASMSLERRMVLLA-FGAELVL 121 (325)
Q Consensus 62 ~~g~~~~g--~~~vv~~ssGN~g~alA~~a~~~g~-~~~i~~p~~~~~~~~~~~~~-~Ga~v~~ 121 (325)
+.+.+++| .+.+|...+|..|.++...|+.+|. ++++..+ +..+.+.++. +|++-++
T Consensus 146 ~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~---s~~~~~~~~~~lGa~~vi 206 (345)
T cd08293 146 EKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICG---SDEKCQLLKSELGFDAAI 206 (345)
T ss_pred HhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcC---CHHHHHHHHHhcCCcEEE
Confidence 34445554 5677777778899888888999998 5554432 4556666655 8875433
No 117
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=74.78 E-value=34 Score=31.70 Aligned_cols=56 Identities=25% Similarity=0.255 Sum_probs=39.5
Q ss_pred HHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 020528 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119 (325)
Q Consensus 61 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 119 (325)
.+.+.+++|.+.+|. ++|-.|.+++..|+.+|.+.++.+. .+..+++.++.+|++-
T Consensus 169 ~~~~~~~~g~~VlV~-G~g~vG~~a~~~ak~~G~~~Vi~~~--~~~~~~~~~~~~Ga~~ 224 (358)
T TIGR03451 169 VNTGGVKRGDSVAVI-GCGGVGDAAIAGAALAGASKIIAVD--IDDRKLEWAREFGATH 224 (358)
T ss_pred HhccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHcCCce
Confidence 344556777777776 4688999988899999986444443 2466777778888843
No 118
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=74.57 E-value=48 Score=30.72 Aligned_cols=57 Identities=21% Similarity=0.260 Sum_probs=41.1
Q ss_pred HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH-HcCCEEEE
Q 020528 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLL-AFGAELVL 121 (325)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~-~~Ga~v~~ 121 (325)
+.+.+++|.+.+|.+.+|.-|.++...|+.+|.++++.. .+..|...++ .+|++-++
T Consensus 152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~---~~~~k~~~~~~~lGa~~vi 209 (348)
T PLN03154 152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSA---GSSQKVDLLKNKLGFDEAF 209 (348)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEc---CCHHHHHHHHHhcCCCEEE
Confidence 345667887777877779999999999999998754432 3556777776 68885433
No 119
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=74.57 E-value=20 Score=32.75 Aligned_cols=56 Identities=21% Similarity=0.204 Sum_probs=41.1
Q ss_pred CCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCC--CHHHHHH----HHHcCCEEEEeCC
Q 020528 69 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM--SLERRMV----LLAFGAELVLTDP 124 (325)
Q Consensus 69 g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~--~~~~~~~----~~~~Ga~v~~~~~ 124 (325)
|.+.+.+.-+.|-+.|+-.+|+++|+.+++..|+.. .+.-+.. .+..|+++..+..
T Consensus 153 g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d 214 (310)
T COG0078 153 GLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTED 214 (310)
T ss_pred CcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecC
Confidence 335555666689999999999999999999999973 2222332 2445889988873
No 120
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=74.38 E-value=46 Score=30.61 Aligned_cols=57 Identities=26% Similarity=0.355 Sum_probs=37.8
Q ss_pred HHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 020528 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120 (325)
Q Consensus 61 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 120 (325)
.+...+.+|.+.+|.+ +|..|.+++..|+.+|.+.++++. .+..+...++.+|++.+
T Consensus 165 l~~~~~~~g~~vlI~g-~g~vG~~a~q~a~~~G~~~v~~~~--~~~~~~~~~~~~ga~~~ 221 (351)
T cd08233 165 VRRSGFKPGDTALVLG-AGPIGLLTILALKAAGASKIIVSE--PSEARRELAEELGATIV 221 (351)
T ss_pred HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHhCCCEE
Confidence 3445566776666665 688898888889999985444443 35556666677777543
No 121
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=73.95 E-value=31 Score=31.60 Aligned_cols=57 Identities=23% Similarity=0.325 Sum_probs=44.5
Q ss_pred HHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH-cCCEEE
Q 020528 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLA-FGAELV 120 (325)
Q Consensus 61 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~-~Ga~v~ 120 (325)
.+-|..++|.+.+|.+.+|-.|.-+.-.|+..|.+++-+.. ..+|.+.++. +|-+..
T Consensus 143 l~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaG---g~eK~~~l~~~lGfD~~ 200 (340)
T COG2130 143 LDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAG---GAEKCDFLTEELGFDAG 200 (340)
T ss_pred HHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecC---CHHHHHHHHHhcCCcee
Confidence 45577778889999999999999988889988988877754 5778887776 555443
No 122
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=73.81 E-value=7.6 Score=36.35 Aligned_cols=55 Identities=25% Similarity=0.233 Sum_probs=42.5
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA 125 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (325)
..++..+||..+.-+|+.+..++=.-.|++|.-+.......+...|+++++++.+
T Consensus 41 ~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~~~G~~pv~~Di~ 95 (363)
T PF01041_consen 41 KYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATASAILWAGAEPVFVDID 95 (363)
T ss_dssp SEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHHHHHHHTT-EEEEE-BE
T ss_pred CeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHHHHHHHhccEEEEEecc
Confidence 5678888998988888888433333788899988999999999999999999864
No 123
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=73.58 E-value=22 Score=33.10 Aligned_cols=61 Identities=25% Similarity=0.273 Sum_probs=39.8
Q ss_pred HHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q 020528 59 DAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 123 (325)
Q Consensus 59 ~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 123 (325)
+++++-.++||.+ |...+-|-.|.....+|+.+|.+++.| +.+..|++..+.+||+.+...
T Consensus 157 ~alk~~~~~pG~~-V~I~G~GGlGh~avQ~Aka~ga~Via~---~~~~~K~e~a~~lGAd~~i~~ 217 (339)
T COG1064 157 RALKKANVKPGKW-VAVVGAGGLGHMAVQYAKAMGAEVIAI---TRSEEKLELAKKLGADHVINS 217 (339)
T ss_pred eehhhcCCCCCCE-EEEECCcHHHHHHHHHHHHcCCeEEEE---eCChHHHHHHHHhCCcEEEEc
Confidence 3455566788866 444555557776666777777776666 346777777777777665554
No 124
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=73.27 E-value=33 Score=31.55 Aligned_cols=58 Identities=16% Similarity=0.153 Sum_probs=39.5
Q ss_pred HHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 020528 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (325)
Q Consensus 61 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 121 (325)
.++....+|.+.+|. ++|..|.+....++.+|.+.++.+.. ++.+++.++.+|++.+.
T Consensus 162 l~~~~~~~g~~VlV~-G~G~vG~~aiqlak~~G~~~Vi~~~~--~~~~~~~a~~lGa~~vi 219 (343)
T PRK09880 162 AHQAGDLQGKRVFVS-GVGPIGCLIVAAVKTLGAAEIVCADV--SPRSLSLAREMGADKLV 219 (343)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEEeC--CHHHHHHHHHcCCcEEe
Confidence 333333466566665 46889999999999999865544432 46778888889986543
No 125
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=73.11 E-value=41 Score=31.40 Aligned_cols=55 Identities=22% Similarity=0.376 Sum_probs=38.8
Q ss_pred HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 020528 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119 (325)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 119 (325)
+...+++|.+.+|.+ +|..|..++..|+.+|.+-++.+. .++.|++.++.+|++.
T Consensus 185 ~~~~i~~g~~VlV~G-~G~vG~~a~~lak~~G~~~Vi~~~--~~~~r~~~a~~~Ga~~ 239 (371)
T cd08281 185 NTAGVRPGQSVAVVG-LGGVGLSALLGAVAAGASQVVAVD--LNEDKLALARELGATA 239 (371)
T ss_pred hccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCcEEEEc--CCHHHHHHHHHcCCce
Confidence 445567776767754 688999888899999985344433 3567778888888854
No 126
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=72.98 E-value=44 Score=30.10 Aligned_cols=55 Identities=24% Similarity=0.278 Sum_probs=37.2
Q ss_pred HHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020528 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 118 (325)
Q Consensus 61 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 118 (325)
.+...+.+|.+.+|...+|..|.+++..|+.+|.+.+++... ..+...++.+|++
T Consensus 132 ~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~---~~~~~~~~~~g~~ 186 (324)
T cd08292 132 LDFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRR---DAGVAELRALGIG 186 (324)
T ss_pred HHhhCCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecC---HHHHHHHHhcCCC
Confidence 344556677677776677889999999999999886665442 3344555556653
No 127
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=72.82 E-value=94 Score=30.45 Aligned_cols=123 Identities=16% Similarity=0.153 Sum_probs=73.8
Q ss_pred HHHHHHHcCCeEEEEe-----------cCCCCHHHHHHHHHcCCEEEEeCCCC----ChhHHHHHHHHHHHhCCCeE-E-
Q 020528 85 LAFMAAAKGYRLIITM-----------PASMSLERRMVLLAFGAELVLTDPAR----GMKGAVQKAEEIRDKTPNSY-V- 147 (325)
Q Consensus 85 lA~~a~~~g~~~~i~~-----------p~~~~~~~~~~~~~~Ga~v~~~~~~~----~~~~~~~~a~~~~~~~~~~~-~- 147 (325)
+..+|+..|+++++.. |..+...-+......|++.+....+. ...++.+...++.++.+..+ +
T Consensus 262 ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~G~yP~~~v~~m~~I~~~~E~~~~~~ 341 (473)
T TIGR01064 262 MIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKGKYPVEAVKMMAKIAKEAEKALAYL 341 (473)
T ss_pred HHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhcCCCHHHHHHHHHHHHHHHHhccchh
Confidence 4567899999988875 33456677777888899999886532 22355555555443321111 1
Q ss_pred --eCCCCC--C--cchHhHHhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCC
Q 020528 148 --LQQFEN--P--ANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVES 213 (325)
Q Consensus 148 --~~~~~n--~--~~~~~g~~t~~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~ 213 (325)
...... . ..........+.++.+.+ +.+.||+.+-+|.++--+++ ..|...|+++.+...
T Consensus 342 ~~~~~~~~~~~~~~~~~~~ia~~a~~~a~~~--~akaIVv~T~SG~TA~~vSr----~rp~~PIiAvT~~~~ 407 (473)
T TIGR01064 342 TNFNDRKNSDPKPSTITEAIALSAVEAAEKL--DAKAIVVLTESGRTARLLSK----YRPNAPIIAVTPNER 407 (473)
T ss_pred hhhhhhhcccccCCChHHHHHHHHHHHHhhc--CCCEEEEEcCChHHHHHHHh----hCCCCCEEEEcCCHH
Confidence 001000 0 001123334445566665 47899999999998765444 479999999976443
No 128
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=72.73 E-value=34 Score=29.84 Aligned_cols=71 Identities=15% Similarity=0.123 Sum_probs=45.4
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC-CChhHHHHHHHHHHHh
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRDK 141 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 141 (325)
+..+|+..++.-|.++|....+.|.+++++-.. ........++..|.++..+..+ .+.++..+...+..++
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (251)
T PRK12481 9 KVAIITGCNTGLGQGMAIGLAKAGADIVGVGVA-EAPETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEV 80 (251)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCc-hHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 477899999999999999999999998776432 2233345566678777655432 2333444444444333
No 129
>PRK08703 short chain dehydrogenase; Provisional
Probab=72.52 E-value=46 Score=28.61 Aligned_cols=31 Identities=26% Similarity=0.319 Sum_probs=25.0
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEe
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITM 100 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~ 100 (325)
++.+|+.++|.-|.++|......|.+++++.
T Consensus 7 k~vlItG~sggiG~~la~~l~~~g~~V~~~~ 37 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAAGATVILVA 37 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEe
Confidence 4678899999999999988888888765553
No 130
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=71.98 E-value=23 Score=32.58 Aligned_cols=57 Identities=23% Similarity=0.212 Sum_probs=40.0
Q ss_pred HHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 020528 60 AEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120 (325)
Q Consensus 60 a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 120 (325)
+.+...+++|.+.+|.. .|..|.+++..|+.+|.+++++ . .+..|.+.++.+|++.+
T Consensus 157 ~~~~~~~~~g~~VlV~G-~g~iG~~a~~~a~~~G~~vi~~-~--~~~~~~~~a~~~Ga~~v 213 (329)
T TIGR02822 157 ALLRASLPPGGRLGLYG-FGGSAHLTAQVALAQGATVHVM-T--RGAAARRLALALGAASA 213 (329)
T ss_pred HHHhcCCCCCCEEEEEc-CCHHHHHHHHHHHHCCCeEEEE-e--CChHHHHHHHHhCCcee
Confidence 33445667776766665 4778888888899999874443 2 24667888899998653
No 131
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=71.76 E-value=48 Score=28.86 Aligned_cols=54 Identities=15% Similarity=0.174 Sum_probs=39.5
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 124 (325)
+..+|+..+|.-|.++|......|.+++++ .........+.++..+.++..+..
T Consensus 11 k~~lItG~~~gIG~a~a~~l~~~G~~vv~~-~~~~~~~~~~~~~~~~~~~~~~~~ 64 (253)
T PRK08993 11 KVAVVTGCDTGLGQGMALGLAEAGCDIVGI-NIVEPTETIEQVTALGRRFLSLTA 64 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEe-cCcchHHHHHHHHhcCCeEEEEEC
Confidence 377899999999999999999999987655 333344455666667777766553
No 132
>PRK08628 short chain dehydrogenase; Provisional
Probab=71.74 E-value=36 Score=29.65 Aligned_cols=55 Identities=15% Similarity=0.106 Sum_probs=39.6
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 124 (325)
+..+|+..+|--|.++|..-...|.+++++............++..|.+++.+..
T Consensus 8 ~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 62 (258)
T PRK08628 8 KVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQV 62 (258)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhHHHHHHHHhcCCceEEEEc
Confidence 3678888889999999999888999987765543333334556667777766554
No 133
>PRK12743 oxidoreductase; Provisional
Probab=71.55 E-value=32 Score=30.01 Aligned_cols=71 Identities=13% Similarity=0.226 Sum_probs=46.5
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCCC-CChhHHHHHHHHHHHh
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS--LERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRDK 141 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 141 (325)
+.+|+.++|.-|.++|......|.+++++...+.+ ......++..|.++..+..+ .+.++..+...++.++
T Consensus 4 ~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 77 (256)
T PRK12743 4 VAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQR 77 (256)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 67888989999999999999999988777554322 22345666778777765432 2333444444444443
No 134
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=71.50 E-value=37 Score=29.63 Aligned_cols=72 Identities=18% Similarity=0.195 Sum_probs=44.9
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC-CChhHHHHHHHHHHHh
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRDK 141 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 141 (325)
++.+|+..+|.-|.++|..-...|.+++++..........+.+...|.++..+..+ .+.++..+...+..+.
T Consensus 16 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~ 88 (258)
T PRK06935 16 KVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEE 88 (258)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 47888999999999999998889999887765521122334455567666655432 2233333444444443
No 135
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=71.43 E-value=17 Score=27.98 Aligned_cols=32 Identities=22% Similarity=0.407 Sum_probs=21.5
Q ss_pred CCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEe
Q 020528 175 KIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVE 209 (325)
Q Consensus 175 ~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~ 209 (325)
.+|.+|-++|++.++. .+++...+.-+++.+-
T Consensus 58 ~~d~vid~~g~~~~~~---~~~~~l~~~G~~v~vg 89 (130)
T PF00107_consen 58 GVDVVIDCVGSGDTLQ---EAIKLLRPGGRIVVVG 89 (130)
T ss_dssp SEEEEEESSSSHHHHH---HHHHHEEEEEEEEEES
T ss_pred cceEEEEecCcHHHHH---HHHHHhccCCEEEEEE
Confidence 5899999999876654 3455555655666664
No 136
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=71.08 E-value=22 Score=29.14 Aligned_cols=45 Identities=18% Similarity=0.211 Sum_probs=36.3
Q ss_pred ChhHHHHHHHHHHcCCeEEEEecCC--CCH--HHH----HHHHHcCCEEEEeC
Q 020528 79 GNTGIGLAFMAAAKGYRLIITMPAS--MSL--ERR----MVLLAFGAELVLTD 123 (325)
Q Consensus 79 GN~g~alA~~a~~~g~~~~i~~p~~--~~~--~~~----~~~~~~Ga~v~~~~ 123 (325)
+|.+.|++..++++|+.++++.|+. .+. ..+ +..+..|.++..++
T Consensus 13 ~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 65 (158)
T PF00185_consen 13 NRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITD 65 (158)
T ss_dssp SHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEES
T ss_pred ChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEe
Confidence 8999999999999999999999998 455 233 34455699998885
No 137
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=71.00 E-value=25 Score=32.45 Aligned_cols=62 Identities=24% Similarity=0.336 Sum_probs=45.5
Q ss_pred HHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 020528 59 DAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 59 ~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 124 (325)
.+++.|+ .||+..-|..-+| .|.---.+|+.+|++++++-.. +..|.+.++.+||+......
T Consensus 173 pLk~~g~-~pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~--~~kkeea~~~LGAd~fv~~~ 234 (360)
T KOG0023|consen 173 PLKRSGL-GPGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTS--SKKKEEAIKSLGADVFVDST 234 (360)
T ss_pred hhHHcCC-CCCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCC--chhHHHHHHhcCcceeEEec
Confidence 3455665 5887766666666 8877777899999999988433 45677889999998877653
No 138
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=70.57 E-value=23 Score=27.25 Aligned_cols=42 Identities=26% Similarity=0.264 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC
Q 020528 81 TGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA 125 (325)
Q Consensus 81 ~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (325)
-|..+...|+.+|.+++++.+ ++.|++.++.+|++.+.....
T Consensus 2 vG~~a~q~ak~~G~~vi~~~~---~~~k~~~~~~~Ga~~~~~~~~ 43 (130)
T PF00107_consen 2 VGLMAIQLAKAMGAKVIATDR---SEEKLELAKELGADHVIDYSD 43 (130)
T ss_dssp HHHHHHHHHHHTTSEEEEEES---SHHHHHHHHHTTESEEEETTT
T ss_pred hHHHHHHHHHHcCCEEEEEEC---CHHHHHHHHhhcccccccccc
Confidence 367778889999965555543 688999999999888777653
No 139
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=70.26 E-value=44 Score=28.80 Aligned_cols=54 Identities=19% Similarity=0.201 Sum_probs=38.8
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 124 (325)
++.+|+..+|.-|.++|......|..++++.. +........++.++.++..+..
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r-~~~~~~~~~~~~~~~~~~~~~~ 59 (248)
T TIGR01832 6 KVALVTGANTGLGQGIAVGLAEAGADIVGAGR-SEPSETQQQVEALGRRFLSLTA 59 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcC-chHHHHHHHHHhcCCceEEEEC
Confidence 47788888899999999999999998776654 3233345556667776665553
No 140
>PRK07109 short chain dehydrogenase; Provisional
Probab=70.17 E-value=29 Score=32.05 Aligned_cols=55 Identities=18% Similarity=0.151 Sum_probs=39.1
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCC-CHHHHHHHHHcCCEEEEeCC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM-SLERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~-~~~~~~~~~~~Ga~v~~~~~ 124 (325)
+..+|+..+|--|.++|......|.+++++..... .....+.++..|.+++.+..
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~ 64 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVA 64 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEe
Confidence 36788888899999999999999998777654321 12234456677888776654
No 141
>PRK06182 short chain dehydrogenase; Validated
Probab=70.10 E-value=67 Score=28.25 Aligned_cols=68 Identities=18% Similarity=0.186 Sum_probs=45.4
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHh
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDK 141 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~ 141 (325)
+..+|+.++|--|.++|......|.+++++... ..+++.+...+.+.+.++-. +.++......++.++
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~---~~~l~~~~~~~~~~~~~Dv~-~~~~~~~~~~~~~~~ 71 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGYTVYGAARR---VDKMEDLASLGVHPLSLDVT-DEASIKAAVDTIIAE 71 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHhCCCeEEEeeCC-CHHHHHHHHHHHHHh
Confidence 367888988999999999988899988776543 34455555567777776653 334444444444443
No 142
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=69.98 E-value=40 Score=29.29 Aligned_cols=55 Identities=11% Similarity=0.056 Sum_probs=39.5
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCC-CHHHHHHHHHcCCEEEEeCC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM-SLERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~-~~~~~~~~~~~Ga~v~~~~~ 124 (325)
++.+|+.++|.-|.+++......|.+++++..... .......++..|.++..+..
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 63 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAM 63 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEEC
Confidence 47889999999999999999999998776644321 12334456667888766553
No 143
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=69.77 E-value=58 Score=27.01 Aligned_cols=105 Identities=18% Similarity=0.110 Sum_probs=66.7
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCC
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQ 150 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 150 (325)
++|..-+.|+-|.++|..++.+|++++.+-|...+.. .....+.+. . ++++ +.++. +...++-
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~---~~~~~~~~~---~---~l~e-------ll~~a-Div~~~~ 99 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEE---GADEFGVEY---V---SLDE-------LLAQA-DIVSLHL 99 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHH---HHHHTTEEE---S---SHHH-------HHHH--SEEEE-S
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhh---hccccccee---e---ehhh-------hcchh-hhhhhhh
Confidence 5667778899999999999999999888876543222 334444422 1 2333 33333 4544432
Q ss_pred CCCCcchHhHHhchHHHHHhhhCCCCCEEEEecCCchhH--HHHHHHHHh
Q 020528 151 FENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTV--TGAGKYLKE 198 (325)
Q Consensus 151 ~~n~~~~~~g~~t~~~Ei~~ql~~~~D~iv~pvG~Gg~~--aGi~~~~k~ 198 (325)
-.++.+ ...+..|.++++ +++.+++-+|-|+.+ ..+..+++.
T Consensus 100 plt~~T----~~li~~~~l~~m--k~ga~lvN~aRG~~vde~aL~~aL~~ 143 (178)
T PF02826_consen 100 PLTPET----RGLINAEFLAKM--KPGAVLVNVARGELVDEDALLDALES 143 (178)
T ss_dssp SSSTTT----TTSBSHHHHHTS--TTTEEEEESSSGGGB-HHHHHHHHHT
T ss_pred cccccc----ceeeeeeeeecc--ccceEEEeccchhhhhhhHHHHHHhh
Confidence 223322 346677888988 478899999999987 456666665
No 144
>PRK08589 short chain dehydrogenase; Validated
Probab=69.67 E-value=32 Score=30.44 Aligned_cols=54 Identities=17% Similarity=0.074 Sum_probs=37.3
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 123 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 123 (325)
++.+|+..+|--|.++|......|.+++++-...........++..|.++..+.
T Consensus 7 k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~ 60 (272)
T PRK08589 7 KVAVITGASTGIGQASAIALAQEGAYVLAVDIAEAVSETVDKIKSNGGKAKAYH 60 (272)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHhcCCeEEEEE
Confidence 467888888889999999988899988877554211222445556676665554
No 145
>PRK08226 short chain dehydrogenase; Provisional
Probab=69.66 E-value=36 Score=29.75 Aligned_cols=54 Identities=20% Similarity=0.113 Sum_probs=36.3
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 123 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 123 (325)
++.+|+.++|.-|.++|......|.+++++-...........+...|.++..+.
T Consensus 7 ~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~ 60 (263)
T PRK08226 7 KTALITGALQGIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAVV 60 (263)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCCceEEEE
Confidence 467888999999999999988899987666443211222334445566665544
No 146
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=69.52 E-value=37 Score=29.50 Aligned_cols=55 Identities=18% Similarity=0.084 Sum_probs=37.1
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~ 124 (325)
++.+|+.++|.-|.++|......|.+++++-....+ ......++..|.++..+..
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~ 66 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAF 66 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEc
Confidence 478899999999999999988899986655332111 1223445556777766643
No 147
>PRK14030 glutamate dehydrogenase; Provisional
Probab=69.03 E-value=34 Score=33.18 Aligned_cols=53 Identities=17% Similarity=0.134 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHHH-hCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecC
Q 020528 49 KDRIGYSMIADAEE-KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 102 (325)
Q Consensus 49 K~R~a~~~~~~a~~-~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~ 102 (325)
=-||..+.+..+.+ .|. ....++|+..+.||-|..+|.....+|.+++.+...
T Consensus 207 Tg~Gv~~~~~~~~~~~g~-~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~ 260 (445)
T PRK14030 207 TGFGALYFVHQMLETKGI-DIKGKTVAISGFGNVAWGAATKATELGAKVVTISGP 260 (445)
T ss_pred cHHHHHHHHHHHHHHcCC-CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcC
Confidence 34567777766654 443 444467888999999999999999999998886543
No 148
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=68.83 E-value=60 Score=29.58 Aligned_cols=50 Identities=22% Similarity=0.300 Sum_probs=34.7
Q ss_pred CCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020528 65 LIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 118 (325)
Q Consensus 65 ~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 118 (325)
.+.++.+.+|.. +|..|.+++..|+.+|.+.+++.+ ...++..++.+|++
T Consensus 160 ~~~~~~~vlV~g-~g~iG~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~g~~ 209 (333)
T cd08296 160 GAKPGDLVAVQG-IGGLGHLAVQYAAKMGFRTVAISR---GSDKADLARKLGAH 209 (333)
T ss_pred CCCCCCEEEEEC-CcHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHcCCc
Confidence 456665666665 789999999999999987544422 34566666777774
No 149
>PRK05993 short chain dehydrogenase; Provisional
Probab=68.72 E-value=60 Score=28.74 Aligned_cols=65 Identities=25% Similarity=0.194 Sum_probs=44.0
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHH
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEI 138 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~ 138 (325)
+..+|+.++|.-|.++|......|.+++++... ..++..+...|.+.+.++-. +.++..+...+.
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~---~~~~~~l~~~~~~~~~~Dl~-d~~~~~~~~~~~ 69 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGWRVFATCRK---EEDVAALEAEGLEAFQLDYA-EPESIAALVAQV 69 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHCCceEEEccCC-CHHHHHHHHHHH
Confidence 367888999999999999988899987776442 44555666667777766653 333333334444
No 150
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=68.35 E-value=72 Score=30.35 Aligned_cols=127 Identities=17% Similarity=0.215 Sum_probs=66.9
Q ss_pred EEecCCC-hhHHHHHHHHHHcCCeEEEEecC-CCC----HHHHHHHHHcCC-EEEEeCCCCChhHHHHHHHHHHHhCCCe
Q 020528 73 LIEPTSG-NTGIGLAFMAAAKGYRLIITMPA-SMS----LERRMVLLAFGA-ELVLTDPARGMKGAVQKAEEIRDKTPNS 145 (325)
Q Consensus 73 vv~~ssG-N~g~alA~~a~~~g~~~~i~~p~-~~~----~~~~~~~~~~Ga-~v~~~~~~~~~~~~~~~a~~~~~~~~~~ 145 (325)
|+..|+| ++...+.+...+.+.+++.|.-. +.+ ..-.+....+|| +++.++....|. .+.+...-+. +.
T Consensus 1 VLAySGGLDTS~~l~~L~e~~~~~Via~~aDlGq~~~d~~~i~~kA~~~Ga~~~~vvD~r~ef~--~~~i~~aI~a--nA 76 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWLKEEGGYEVIAVTADLGQPDEDLEAIEEKALKLGASKHIVVDARDEFA--EDYIFPAIKA--NA 76 (388)
T ss_dssp EEE--SSHHHHHHHHHHHHTTTEEEEEEEEESSST-S-HHHHHHHHHHHT-SEEEEEE-HHHHH--HHTHHHHHHT--T-
T ss_pred CeeeCCChHHHHHHHHHHhhcCceEEEEEEECCCcHHHHHHHHHHHHhcCCceeeecchHHHHH--HHHHHHHHHH--HH
Confidence 3456666 56666677777777888877653 222 233445678999 999998532221 1111111111 23
Q ss_pred EEeCCCCC---CcchHhHHhchHHHHHhhhCCCCCEEEE-ecCCchhHHHHHHHHHhhCCCcEEEE
Q 020528 146 YVLQQFEN---PANPKIHYETTGPEIWKGTGGKIDALVS-GIGTGGTVTGAGKYLKEHNPEIKLYG 207 (325)
Q Consensus 146 ~~~~~~~n---~~~~~~g~~t~~~Ei~~ql~~~~D~iv~-pvG~Gg~~aGi~~~~k~~~~~~~vig 207 (325)
.|-+.|-. ...|. ......|++++. ..++|.- |+|-|--..=.-.+++.+.|+.+|++
T Consensus 77 ~Yeg~YpL~tsl~Rpl--Ia~~~v~~A~~~--ga~~vaHG~TgkGNDqvRFe~~~~al~P~l~via 138 (388)
T PF00764_consen 77 LYEGRYPLSTSLARPL--IAKKLVEVAREE--GADAVAHGCTGKGNDQVRFELSIRALAPELKVIA 138 (388)
T ss_dssp -BTTTB--CCCCHHHH--HHHHHHHHHHHH--T-SEEE----TTSSHHHHHHHHHHHHSTTSEEE-
T ss_pred HhCCCccccccchHHH--HHHHHHHHHHHc--CCeEEeccCCcCCCchhHHHHHHHHhCcCCcEec
Confidence 33332211 11122 233445666665 4677766 66778888888888899999988875
No 151
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=67.78 E-value=46 Score=30.00 Aligned_cols=47 Identities=21% Similarity=0.302 Sum_probs=33.2
Q ss_pred CCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020528 69 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 118 (325)
Q Consensus 69 g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 118 (325)
+.+.+|...+|..|.+++..|+.+|.++++... +..+...++.+|++
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~ 193 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAKLGYEVVASTG---KADAADYLKKLGAK 193 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCeEEEEec---CHHHHHHHHHcCCC
Confidence 446667666689999999999999987554433 34566666777773
No 152
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=67.56 E-value=81 Score=28.37 Aligned_cols=55 Identities=29% Similarity=0.343 Sum_probs=40.8
Q ss_pred CCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 020528 64 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (325)
Q Consensus 64 g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 121 (325)
+.+.++.+.+|...+|..|.+++..|+.+|.+.+++. .+..+...++.+|++.+.
T Consensus 136 ~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~---~~~~~~~~~~~~g~~~~~ 190 (334)
T PTZ00354 136 GDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITT---SSEEKVDFCKKLAAIILI 190 (334)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHcCCcEEE
Confidence 5567777777777789999999999999999876543 245666666778885433
No 153
>PRK06114 short chain dehydrogenase; Provisional
Probab=67.53 E-value=63 Score=28.09 Aligned_cols=55 Identities=13% Similarity=0.093 Sum_probs=38.6
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS--LERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~ 124 (325)
+..+|+.++|--|.++|......|.++++....... ....+.++..|.++..+..
T Consensus 9 k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~ 65 (254)
T PRK06114 9 QVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAA 65 (254)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEc
Confidence 467888888889999999988899988777554321 2234456666777665543
No 154
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=67.25 E-value=48 Score=30.49 Aligned_cols=56 Identities=20% Similarity=0.177 Sum_probs=39.5
Q ss_pred HHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 020528 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119 (325)
Q Consensus 61 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 119 (325)
.+...+.+|.+.+|. +.|..|.+++..|+.+|.+.++.+.. +..++..++.+|++-
T Consensus 153 ~~~~~~~~g~~vlV~-G~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~Ga~~ 208 (347)
T PRK10309 153 FHLAQGCEGKNVIII-GAGTIGLLAIQCAVALGAKSVTAIDI--NSEKLALAKSLGAMQ 208 (347)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEECC--CHHHHHHHHHcCCce
Confidence 344555677676676 56889999999999999875554432 556677778888753
No 155
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=67.22 E-value=51 Score=24.75 Aligned_cols=93 Identities=23% Similarity=0.264 Sum_probs=50.5
Q ss_pred EecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCC
Q 020528 74 IEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFEN 153 (325)
Q Consensus 74 v~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n 153 (325)
+..+.|..|..++..-...+.+++++-. .+.+.+.++..|.+++.-+.
T Consensus 2 vI~G~g~~~~~i~~~L~~~~~~vvvid~---d~~~~~~~~~~~~~~i~gd~----------------------------- 49 (116)
T PF02254_consen 2 VIIGYGRIGREIAEQLKEGGIDVVVIDR---DPERVEELREEGVEVIYGDA----------------------------- 49 (116)
T ss_dssp EEES-SHHHHHHHHHHHHTTSEEEEEES---SHHHHHHHHHTTSEEEES-T-----------------------------
T ss_pred EEEcCCHHHHHHHHHHHhCCCEEEEEEC---CcHHHHHHHhcccccccccc-----------------------------
Confidence 4456677887777776665555555522 34444555554444333221
Q ss_pred CcchHhHHhchHHHHHhhhC-CCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEE
Q 020528 154 PANPKIHYETTGPEIWKGTG-GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGV 208 (325)
Q Consensus 154 ~~~~~~g~~t~~~Ei~~ql~-~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV 208 (325)
.. .+++++.+ .+.|.|++..+.-..-.-++..+|+++|..++++.
T Consensus 50 -~~---------~~~l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~~~~~~~ii~~ 95 (116)
T PF02254_consen 50 -TD---------PEVLERAGIEKADAVVILTDDDEENLLIALLARELNPDIRIIAR 95 (116)
T ss_dssp -TS---------HHHHHHTTGGCESEEEEESSSHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred -hh---------hhHHhhcCccccCEEEEccCCHHHHHHHHHHHHHHCCCCeEEEE
Confidence 11 12333321 24567777776655555566777777777777665
No 156
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=67.03 E-value=78 Score=28.88 Aligned_cols=53 Identities=28% Similarity=0.465 Sum_probs=38.3
Q ss_pred hCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020528 63 KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 118 (325)
Q Consensus 63 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 118 (325)
...+.+|...+| .++|..|.+++..|+..|.+.++.+... ..+...++.+|++
T Consensus 163 ~~~~~~g~~vlI-~g~g~vg~~~~~lak~~G~~~v~~~~~~--~~~~~~~~~~ga~ 215 (345)
T cd08287 163 SAGVRPGSTVVV-VGDGAVGLCAVLAAKRLGAERIIAMSRH--EDRQALAREFGAT 215 (345)
T ss_pred hcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEECCC--HHHHHHHHHcCCc
Confidence 444566667667 4578999999999999999865555433 4567777888874
No 157
>PRK12937 short chain dehydrogenase; Provisional
Probab=66.29 E-value=56 Score=28.01 Aligned_cols=55 Identities=18% Similarity=0.232 Sum_probs=39.9
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS--LERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~ 124 (325)
++.+|+..+|.-|.++|......|.+++++.....+ ....+.++..+.++..+..
T Consensus 6 ~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (245)
T PRK12937 6 KVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQA 62 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEEC
Confidence 467888989999999999999999988776544321 2234455667888777654
No 158
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=66.26 E-value=49 Score=27.92 Aligned_cols=63 Identities=17% Similarity=0.243 Sum_probs=41.2
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhC
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKT 142 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~ 142 (325)
+-|--.|||-+|.++|.++...|-.++++.....-.. -.+.+++.+. +.++-.+...+...+.
T Consensus 21 R~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~------p~~~~~i~v~---sa~em~~~~~~~~~~~ 83 (185)
T PF04127_consen 21 RFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLPP------PPGVKVIRVE---SAEEMLEAVKELLPSA 83 (185)
T ss_dssp EEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS----------TTEEEEE-S---SHHHHHHHHHHHGGGG
T ss_pred eEecCCCcCHHHHHHHHHHHHCCCEEEEEecCccccc------cccceEEEec---chhhhhhhhccccCcc
Confidence 3445578899999999999999999998887742111 2477888876 4667777777766555
No 159
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=66.25 E-value=57 Score=28.11 Aligned_cols=55 Identities=20% Similarity=0.297 Sum_probs=39.6
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS--LERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~ 124 (325)
++.+|+..+|.-|.+++..-...|.++++...++.. ......++..|.++..+..
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 61 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKA 61 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEc
Confidence 477899999999999999988899987765444322 2233456667888777654
No 160
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=66.08 E-value=59 Score=27.76 Aligned_cols=55 Identities=20% Similarity=0.205 Sum_probs=38.8
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS--LERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~ 124 (325)
++.+|+.++|..|.+++....+.|.+++++.....+ ......++..+.++..+..
T Consensus 6 ~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (248)
T PRK05557 6 KVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQG 62 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEc
Confidence 367889999999999999988889987666654322 1223345556777777754
No 161
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=66.01 E-value=97 Score=28.56 Aligned_cols=52 Identities=29% Similarity=0.431 Sum_probs=36.2
Q ss_pred hCCCCCCCeEEEecCCChhHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHcCCE
Q 020528 63 KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGY-RLIITMPASMSLERRMVLLAFGAE 118 (325)
Q Consensus 63 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~-~~~i~~p~~~~~~~~~~~~~~Ga~ 118 (325)
.+.+.++.+.+|.+ +|..|.+++..|+.+|. +++++ . .+..+...++.+|++
T Consensus 172 ~~~~~~g~~vlI~g-~g~vG~~~~~lak~~G~~~v~~~-~--~~~~~~~~~~~~g~~ 224 (361)
T cd08231 172 AGPVGAGDTVVVQG-AGPLGLYAVAAAKLAGARRVIVI-D--GSPERLELAREFGAD 224 (361)
T ss_pred ccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEE-c--CCHHHHHHHHHcCCC
Confidence 34444666777764 68999999999999999 54444 2 245666677778774
No 162
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=65.81 E-value=72 Score=29.09 Aligned_cols=56 Identities=27% Similarity=0.343 Sum_probs=37.5
Q ss_pred HHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 020528 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119 (325)
Q Consensus 61 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 119 (325)
.+...+.+|.+.+|. ++|.-|.+++..++.+|.+-++++. .+..+.+.++.+|++.
T Consensus 156 l~~~~~~~g~~vlV~-G~G~vG~~~~~~ak~~G~~~vi~~~--~~~~~~~~~~~~ga~~ 211 (339)
T cd08239 156 LRRVGVSGRDTVLVV-GAGPVGLGALMLARALGAEDVIGVD--PSPERLELAKALGADF 211 (339)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHhCCCE
Confidence 344445667676676 4588888888889999988333332 2456677777788754
No 163
>PRK06139 short chain dehydrogenase; Provisional
Probab=65.80 E-value=36 Score=31.42 Aligned_cols=54 Identities=24% Similarity=0.251 Sum_probs=37.8
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTD 123 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~ 123 (325)
+..||+..+|--|.++|......|.+++++...... ......++..|.++..+.
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~ 62 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVP 62 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEE
Confidence 467888888889999999999999987766442211 222345667888876554
No 164
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=65.76 E-value=45 Score=28.52 Aligned_cols=33 Identities=24% Similarity=0.320 Sum_probs=28.4
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 102 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~ 102 (325)
++.+|+.++|.-|.+++......|.+++++...
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~ 38 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRN 38 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 477899999999999999999999988877654
No 165
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=65.61 E-value=46 Score=29.19 Aligned_cols=55 Identities=16% Similarity=0.015 Sum_probs=37.5
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~ 124 (325)
++.+|+.++|.-|.++|......|.+++++-..... ......++..|.+++.+..
T Consensus 11 k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (265)
T PRK07097 11 KIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVC 66 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEc
Confidence 467899999999999999999999987666322111 1223345566777766554
No 166
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=65.42 E-value=14 Score=36.87 Aligned_cols=55 Identities=18% Similarity=0.218 Sum_probs=41.0
Q ss_pred CCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCC------------------CCHHHHHHHHHcCCEEEEe
Q 020528 67 RPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS------------------MSLERRMVLLAFGAELVLT 122 (325)
Q Consensus 67 ~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~------------------~~~~~~~~~~~~Ga~v~~~ 122 (325)
.+| +.|+.-++|..|.+.|.++++.|.+++++=... ....+++.++.+|++++.-
T Consensus 135 ~~g-~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~ 207 (564)
T PRK12771 135 DTG-KRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLG 207 (564)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 344 457778899999999999999999977763221 2345677888999987653
No 167
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=65.24 E-value=67 Score=29.77 Aligned_cols=64 Identities=17% Similarity=0.245 Sum_probs=50.9
Q ss_pred HHHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 020528 58 ADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 58 ~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 124 (325)
.+|-+++.+++|.+ ++..+.|.-|...-..|+.+|-.=+|++. ..+.+++..+.+||+++.-..
T Consensus 159 ~HAcr~~~vk~Gs~-vLV~GAGPIGl~t~l~Aka~GA~~VVi~d--~~~~Rle~Ak~~Ga~~~~~~~ 222 (354)
T KOG0024|consen 159 VHACRRAGVKKGSK-VLVLGAGPIGLLTGLVAKAMGASDVVITD--LVANRLELAKKFGATVTDPSS 222 (354)
T ss_pred hhhhhhcCcccCCe-EEEECCcHHHHHHHHHHHHcCCCcEEEee--cCHHHHHHHHHhCCeEEeecc
Confidence 46777787888855 66688999999999999999988777755 467788888889998876653
No 168
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=64.20 E-value=55 Score=28.91 Aligned_cols=55 Identities=18% Similarity=0.110 Sum_probs=37.9
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCC-CHHHHHHHHHcCCEEEEeCC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM-SLERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~-~~~~~~~~~~~Ga~v~~~~~ 124 (325)
+..+|+..+|.-|.+++......|.+++++..... .......++..|.++..+..
T Consensus 11 k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 66 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKA 66 (278)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEC
Confidence 36788888899999999998899998776654321 12223445566777766553
No 169
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=64.12 E-value=43 Score=32.28 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=33.5
Q ss_pred ChhHHHHHHHHHH-cCCeEEEEecCCC--CHHHHHHHHHcCCEEEEeC
Q 020528 79 GNTGIGLAFMAAA-KGYRLIITMPASM--SLERRMVLLAFGAELVLTD 123 (325)
Q Consensus 79 GN~g~alA~~a~~-~g~~~~i~~p~~~--~~~~~~~~~~~Ga~v~~~~ 123 (325)
+|.+.|++..++. +|++++++.|+.. +...++.++..|.++..++
T Consensus 253 ~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~ 300 (429)
T PRK11891 253 GRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTD 300 (429)
T ss_pred ChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEc
Confidence 6888898888655 4999999988873 4455566667788887765
No 170
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=64.07 E-value=92 Score=28.32 Aligned_cols=51 Identities=27% Similarity=0.307 Sum_probs=36.2
Q ss_pred CCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020528 65 LIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 118 (325)
Q Consensus 65 ~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 118 (325)
.+.++...+|...++..|.+++..|+.+|.++++..+ +..+...++.+|++
T Consensus 162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~ 212 (341)
T cd08297 162 GLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDV---GDEKLELAKELGAD 212 (341)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeC---CHHHHHHHHHcCCc
Confidence 4566667777777778999999999999987655533 34555666667754
No 171
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=63.97 E-value=85 Score=28.82 Aligned_cols=55 Identities=24% Similarity=0.263 Sum_probs=38.3
Q ss_pred HHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020528 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 118 (325)
Q Consensus 61 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 118 (325)
.+...+.++.+.+|. .+|..|.+++..|+.+|...++.+.. +..+....+.+|++
T Consensus 159 ~~~~~~~~g~~vlI~-g~g~iG~~~~~lak~~G~~~v~~~~~--~~~~~~~~~~~g~~ 213 (351)
T cd08285 159 AELANIKLGDTVAVF-GIGPVGLMAVAGARLRGAGRIIAVGS--RPNRVELAKEYGAT 213 (351)
T ss_pred HHccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCc
Confidence 344556677676666 56889999999999999875555433 35566777777774
No 172
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=63.92 E-value=55 Score=29.47 Aligned_cols=50 Identities=22% Similarity=0.298 Sum_probs=37.9
Q ss_pred CCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 020528 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120 (325)
Q Consensus 68 ~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 120 (325)
++...+|...+|..|.+++..|+.+|.+++++.. ++.|.+.++.+|++-+
T Consensus 146 ~~~~vlI~ga~g~vg~~~~~~A~~~G~~vi~~~~---~~~~~~~~~~~g~~~~ 195 (324)
T cd08288 146 GDGPVLVTGAAGGVGSVAVALLARLGYEVVASTG---RPEEADYLRSLGASEI 195 (324)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeC---CHHHHHHHHhcCCCEE
Confidence 4456677666799999999999999998665543 4567788888998443
No 173
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=63.76 E-value=1.1e+02 Score=27.50 Aligned_cols=54 Identities=28% Similarity=0.271 Sum_probs=37.9
Q ss_pred HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020528 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 118 (325)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 118 (325)
+.+.+.+|.+.+|....|..|.+++..|+.+|++.+.+.+ ...+...++.+|++
T Consensus 134 ~~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~---~~~~~~~~~~~g~~ 187 (327)
T PRK10754 134 KTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVG---SAQKAQRAKKAGAW 187 (327)
T ss_pred hhcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHCCCC
Confidence 3456677767677667788999999999999988655533 34455566667763
No 174
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=63.74 E-value=53 Score=31.02 Aligned_cols=89 Identities=18% Similarity=0.240 Sum_probs=40.9
Q ss_pred eEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCC--hhHHHHHHHHHHHhCC-CeEEeCCC-CCCcchHhHHhchHHHHHh
Q 020528 95 RLIITMPASMSLERRMVLLAFGAELVLTDPARG--MKGAVQKAEEIRDKTP-NSYVLQQF-ENPANPKIHYETTGPEIWK 170 (325)
Q Consensus 95 ~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~--~~~~~~~a~~~~~~~~-~~~~~~~~-~n~~~~~~g~~t~~~Ei~~ 170 (325)
|..++.-++.-..--+.++.+|-++.++.+... .....+...+..++.+ .....+.. .||.. -...-+.++++
T Consensus 4 p~~i~fG~g~l~~l~~~~~~~g~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~---~~v~~~~~~~~ 80 (380)
T cd08185 4 PTKIVFGAGKLNELGEEALKPGKKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTT---TTVMEGAALAR 80 (380)
T ss_pred CCeEEECcCHHHHHHHHHHhcCCeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCH---HHHHHHHHHHH
Confidence 344444444333334455556766666654322 1234444555444432 12222222 13321 11122223344
Q ss_pred hhCCCCCEEEEecCCchhH
Q 020528 171 GTGGKIDALVSGIGTGGTV 189 (325)
Q Consensus 171 ql~~~~D~iv~pvG~Gg~~ 189 (325)
+ .++| +|+++|+|+.+
T Consensus 81 ~--~~~D-~IiavGGGS~i 96 (380)
T cd08185 81 E--EGCD-FVVGLGGGSSM 96 (380)
T ss_pred H--cCCC-EEEEeCCccHH
Confidence 3 3688 67789988876
No 175
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=63.56 E-value=39 Score=32.17 Aligned_cols=91 Identities=10% Similarity=-0.001 Sum_probs=41.4
Q ss_pred CCeEEEEecCCCCHHHHHHHHHcCC-EEEEeCCCCChh--HHHHHHHHHHHhCCCeE-EeCCC-CCCcchHhHHhchHHH
Q 020528 93 GYRLIITMPASMSLERRMVLLAFGA-ELVLTDPARGMK--GAVQKAEEIRDKTPNSY-VLQQF-ENPANPKIHYETTGPE 167 (325)
Q Consensus 93 g~~~~i~~p~~~~~~~~~~~~~~Ga-~v~~~~~~~~~~--~~~~~a~~~~~~~~~~~-~~~~~-~n~~~~~~g~~t~~~E 167 (325)
-.|..|+.-.+.-..--..++.+|. ++.++.+ .+.. +..+...+..++.+-.+ ..+.. .||. .....-+.+
T Consensus 25 ~~P~~i~fG~g~~~~l~~~~~~~g~~~~lvv~~-~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~---~~~v~~~~~ 100 (395)
T PRK15454 25 SVPPVTLCGPGAVSSCGQQAQTRGLKHLFVMAD-SFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPC---ITDVCAAVA 100 (395)
T ss_pred ecCCeEEECcCHHHHHHHHHHhcCCCEEEEEcC-cchhhCccHHHHHHHHHHcCCeEEEECCCCCCcC---HHHHHHHHH
Confidence 3444454444433333345566773 3444432 1222 22344454444442112 11111 1332 222223444
Q ss_pred HHhhhCCCCCEEEEecCCchhHH
Q 020528 168 IWKGTGGKIDALVSGIGTGGTVT 190 (325)
Q Consensus 168 i~~ql~~~~D~iv~pvG~Gg~~a 190 (325)
++++ .++| +|+++|+|+.+=
T Consensus 101 ~~r~--~~~D-~IiavGGGS~iD 120 (395)
T PRK15454 101 QLRE--SGCD-GVIAFGGGSVLD 120 (395)
T ss_pred HHHh--cCcC-EEEEeCChHHHH
Confidence 4554 3689 678999888763
No 176
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=63.26 E-value=59 Score=30.34 Aligned_cols=55 Identities=16% Similarity=0.200 Sum_probs=38.9
Q ss_pred HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 020528 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119 (325)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 119 (325)
+...+++|.+.+|. ++|.-|.+++..|+.+|.+-++.+ +.+..+++.++.+|++-
T Consensus 179 ~~~~~~~g~~VlV~-G~G~iG~~a~q~Ak~~G~~~Vi~~--~~~~~~~~~a~~~Ga~~ 233 (368)
T TIGR02818 179 NTAKVEEGDTVAVF-GLGGIGLSVIQGARMAKASRIIAI--DINPAKFELAKKLGATD 233 (368)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEE--cCCHHHHHHHHHhCCCe
Confidence 44556777676676 468899998889999998434443 23566777888888854
No 177
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=63.19 E-value=1.4e+02 Score=28.26 Aligned_cols=90 Identities=19% Similarity=0.244 Sum_probs=41.9
Q ss_pred eEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChh--HHHHHHHHHHHhCC-CeEEeCCC-CCCcchHhHHhchHHHHHh
Q 020528 95 RLIITMPASMSLERRMVLLAFGAELVLTDPARGMK--GAVQKAEEIRDKTP-NSYVLQQF-ENPANPKIHYETTGPEIWK 170 (325)
Q Consensus 95 ~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~--~~~~~a~~~~~~~~-~~~~~~~~-~n~~~~~~g~~t~~~Ei~~ 170 (325)
|..|+.-++.-..--..++.+|-++.++.+...+. +..+...+..++.+ .....+.. .||.. ....-+.+.++
T Consensus 7 p~~i~~G~g~~~~l~~~~~~~~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~---~~v~~~~~~~~ 83 (382)
T cd08187 7 PTKIIFGKGTESELGKELKKYGKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRL---ETVREGIELCK 83 (382)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCH---HHHHHHHHHHH
Confidence 44455555544444455666677777665422232 22344444444431 12222221 13321 11122233334
Q ss_pred hhCCCCCEEEEecCCchhHH
Q 020528 171 GTGGKIDALVSGIGTGGTVT 190 (325)
Q Consensus 171 ql~~~~D~iv~pvG~Gg~~a 190 (325)
+ .++| .|+.+|+|+.+=
T Consensus 84 ~--~~~D-~IIaiGGGS~iD 100 (382)
T cd08187 84 E--EKVD-FILAVGGGSVID 100 (382)
T ss_pred H--cCCC-EEEEeCChHHHH
Confidence 3 3688 577898887663
No 178
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=63.14 E-value=67 Score=28.94 Aligned_cols=55 Identities=24% Similarity=0.315 Sum_probs=39.0
Q ss_pred HHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 020528 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119 (325)
Q Consensus 61 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 119 (325)
.+.+.+.++.+.+|.+ +|..|.+++..|+.+|.+.+++ . .+..+...++.+|+..
T Consensus 148 ~~~~~~~~g~~vlV~g-~g~vg~~~~q~a~~~G~~vi~~-~--~~~~~~~~~~~~g~~~ 202 (319)
T cd08242 148 LEQVPITPGDKVAVLG-DGKLGLLIAQVLALTGPDVVLV-G--RHSEKLALARRLGVET 202 (319)
T ss_pred HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEE-c--CCHHHHHHHHHcCCcE
Confidence 3456667776767764 7889999999999999984443 2 2356777777788754
No 179
>PRK06172 short chain dehydrogenase; Provisional
Probab=62.97 E-value=55 Score=28.36 Aligned_cols=55 Identities=15% Similarity=0.208 Sum_probs=38.3
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~ 124 (325)
++.+|+..+|.-|.++|......|.+++++...... ......++..|.++..+..
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 63 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVAC 63 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEc
Confidence 367888989999999999988899987666443221 2234455667777766543
No 180
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=62.80 E-value=1.1e+02 Score=27.14 Aligned_cols=53 Identities=30% Similarity=0.439 Sum_probs=35.4
Q ss_pred HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCC
Q 020528 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGA 117 (325)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga 117 (325)
+...+.++...+|.+ +|..|.+++..|+.+|.+.++++.. ...+...++.+|+
T Consensus 123 ~~~~~~~~~~vlI~g-~g~vg~~~~~la~~~g~~~v~~~~~--~~~~~~~~~~~g~ 175 (312)
T cd08269 123 RRGWIRAGKTVAVIG-AGFIGLLFLQLAAAAGARRVIAIDR--RPARLALARELGA 175 (312)
T ss_pred HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHhCC
Confidence 345566776777764 6779999988999999883333332 3455666677776
No 181
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=62.72 E-value=52 Score=30.08 Aligned_cols=50 Identities=30% Similarity=0.309 Sum_probs=35.3
Q ss_pred CCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 020528 67 RPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119 (325)
Q Consensus 67 ~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 119 (325)
.+|.+.+|.+ .|..|.++...|+.+|.+.++++ +.+..+...++.+|++.
T Consensus 162 ~~g~~vlV~~-~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~lg~~~ 211 (341)
T PRK05396 162 LVGEDVLITG-AGPIGIMAAAVAKHVGARHVVIT--DVNEYRLELARKMGATR 211 (341)
T ss_pred CCCCeEEEEC-CCHHHHHHHHHHHHcCCCEEEEE--cCCHHHHHHHHHhCCcE
Confidence 3565666654 68889898888999998544444 34566777778888754
No 182
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=62.66 E-value=52 Score=27.27 Aligned_cols=54 Identities=26% Similarity=0.202 Sum_probs=38.4
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCC-----CCHHHHHHHHHcCCEEEEeCC
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS-----MSLERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~-----~~~~~~~~~~~~Ga~v~~~~~ 124 (325)
+-||+.+.|..|..+|..-...+-.-++++.+. .....++.++..|++|..+..
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~ 60 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQC 60 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE-
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeecc
Confidence 347888889999999999666666555555544 234578889999999998764
No 183
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=62.49 E-value=56 Score=30.83 Aligned_cols=56 Identities=29% Similarity=0.363 Sum_probs=42.0
Q ss_pred CCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q 020528 64 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 122 (325)
Q Consensus 64 g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~ 122 (325)
..+.++...+|...+|..|.+++..|+.+|.+.+++. .+..+...++.+|+..++-
T Consensus 185 ~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~---~~~~~~~~~~~~g~~~~v~ 240 (398)
T TIGR01751 185 ATVKPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVV---SSPEKAEYCRELGAEAVID 240 (398)
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEc---CCHHHHHHHHHcCCCEEec
Confidence 4456666777777779999999999999999865553 3456778888899865543
No 184
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=62.37 E-value=1.3e+02 Score=27.57 Aligned_cols=74 Identities=20% Similarity=0.219 Sum_probs=52.9
Q ss_pred CCeEEEecCCChhHHHHHHHHHHcCCeEEEE-ecCCCCHHHHHHHHHcC-CEEEEeCCCCChhHHHHHHHHHHHhCC
Q 020528 69 GESVLIEPTSGNTGIGLAFMAAAKGYRLIIT-MPASMSLERRMVLLAFG-AELVLTDPARGMKGAVQKAEEIRDKTP 143 (325)
Q Consensus 69 g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~-~p~~~~~~~~~~~~~~G-a~v~~~~~~~~~~~~~~~a~~~~~~~~ 143 (325)
|+..+||.+++--|+++|.-.+++|-+.++. +......+.++.++..| ++-..++- .+.++..+.+.++-++.+
T Consensus 38 g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdi-s~~eei~~~a~~Vk~e~G 113 (300)
T KOG1201|consen 38 GEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDI-SDREEIYRLAKKVKKEVG 113 (300)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecC-CCHHHHHHHHHHHHHhcC
Confidence 4578899999889999999999999854333 22334567777888777 33344554 357888888888887764
No 185
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=62.36 E-value=1.1e+02 Score=27.62 Aligned_cols=54 Identities=26% Similarity=0.367 Sum_probs=37.4
Q ss_pred hCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020528 63 KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 118 (325)
Q Consensus 63 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 118 (325)
.+.+.++...+|.+ +|..|.+++..|+..|.+++ ++..+....+...++.+|++
T Consensus 159 ~~~~~~g~~vlI~g-~g~~g~~~~~la~~~G~~v~-~~~~~~~~~~~~~~~~~g~~ 212 (306)
T cd08258 159 RSGIRPGDTVVVFG-PGPIGLLAAQVAKLQGATVV-VVGTEKDEVRLDVAKELGAD 212 (306)
T ss_pred hcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCEEE-EECCCCCHHHHHHHHHhCCc
Confidence 34556666777754 68899999999999998854 33333446677777778763
No 186
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=62.31 E-value=52 Score=35.26 Aligned_cols=32 Identities=19% Similarity=0.338 Sum_probs=28.4
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEec
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMP 101 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p 101 (325)
.+.|+.-++|..|.+.|+..++.|++++||=.
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~ 337 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEA 337 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEee
Confidence 36688899999999999999999999999943
No 187
>PRK12939 short chain dehydrogenase; Provisional
Probab=62.21 E-value=61 Score=27.81 Aligned_cols=55 Identities=16% Similarity=0.108 Sum_probs=36.9
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCC-CHHHHHHHHHcCCEEEEeCC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM-SLERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~-~~~~~~~~~~~Ga~v~~~~~ 124 (325)
++.+|+..+|.-|.++|......|.+++++..... .......++..+.++..+..
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 63 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAA 63 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEc
Confidence 46788888999999999998889998766632211 11223345556777666554
No 188
>PRK12828 short chain dehydrogenase; Provisional
Probab=62.19 E-value=82 Score=26.68 Aligned_cols=55 Identities=20% Similarity=0.063 Sum_probs=38.8
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~ 124 (325)
++.+|+.++|--|.+++......|.+++++.+...+ ......+...+.+++..+-
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~ 63 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDL 63 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeec
Confidence 478899999999999999988889997666553221 2334445666777777664
No 189
>PRK06128 oxidoreductase; Provisional
Probab=62.13 E-value=85 Score=28.23 Aligned_cols=71 Identities=17% Similarity=0.100 Sum_probs=45.5
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCC---CHHHHHHHHHcCCEEEEeCCC-CChhHHHHHHHHHHH
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM---SLERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRD 140 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~---~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~ 140 (325)
++.+|+.++|--|.++|......|.++++...... .......++..|.+++.+..+ .+.++..+...+..+
T Consensus 56 k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 130 (300)
T PRK06128 56 RKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVK 130 (300)
T ss_pred CEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 37889999999999999998889998876543221 123345667778877766542 223333344444433
No 190
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=62.09 E-value=47 Score=31.89 Aligned_cols=53 Identities=21% Similarity=0.280 Sum_probs=39.8
Q ss_pred CCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 020528 64 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120 (325)
Q Consensus 64 g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 120 (325)
+..-+| ++|+..+.|.-|..+|..++.+|.++++ + +.++.+....+.+|++++
T Consensus 197 ~~~l~G-ktVvViG~G~IG~~va~~ak~~Ga~ViV-~--d~d~~R~~~A~~~G~~~~ 249 (413)
T cd00401 197 DVMIAG-KVAVVAGYGDVGKGCAQSLRGQGARVIV-T--EVDPICALQAAMEGYEVM 249 (413)
T ss_pred CCCCCC-CEEEEECCCHHHHHHHHHHHHCCCEEEE-E--ECChhhHHHHHhcCCEEc
Confidence 444455 5678889999999999999999997555 3 334666777788898654
No 191
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=62.07 E-value=56 Score=30.38 Aligned_cols=54 Identities=22% Similarity=0.299 Sum_probs=38.7
Q ss_pred HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020528 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 118 (325)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 118 (325)
+.+.+.+|.+.+|. ++|..|.+++..++.+|..-++.+.. ...+++.++.+|++
T Consensus 178 ~~~~~~~g~~vlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~~--~~~~~~~~~~~ga~ 231 (365)
T cd08277 178 NTAKVEPGSTVAVF-GLGAVGLSAIMGAKIAGASRIIGVDI--NEDKFEKAKEFGAT 231 (365)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCC
Confidence 44566777777776 56899999999999999853333332 46677777888874
No 192
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=61.99 E-value=69 Score=27.43 Aligned_cols=54 Identities=17% Similarity=0.222 Sum_probs=36.9
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCC
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~ 124 (325)
+.+|+.++|..|.+++......|.+++++.....+ ......++..|.+++.+..
T Consensus 9 ~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 63 (239)
T PRK07666 9 NALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATA 63 (239)
T ss_pred EEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEEC
Confidence 67888889999999999988899977666543211 1223344566777776654
No 193
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=61.94 E-value=43 Score=29.05 Aligned_cols=53 Identities=17% Similarity=0.016 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCC
Q 020528 51 RIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS 103 (325)
Q Consensus 51 R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~ 103 (325)
+|..+.+..+.++-......++|+..+.||-|..+|......|.+.+.+...+
T Consensus 4 ~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~ 56 (217)
T cd05211 4 YGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPD 56 (217)
T ss_pred hHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC
Confidence 46666666654432223334678889999999999999999998888887643
No 194
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=61.93 E-value=49 Score=30.84 Aligned_cols=56 Identities=23% Similarity=0.323 Sum_probs=39.1
Q ss_pred HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 020528 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120 (325)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 120 (325)
+...+++|.+.+|. ++|..|.+++..|+.+|.+.++.+. .+..|++.++.+|++.+
T Consensus 180 ~~~~~~~g~~VlV~-G~G~vG~~a~~~ak~~G~~~vi~~~--~~~~~~~~~~~lGa~~~ 235 (368)
T cd08300 180 NTAKVEPGSTVAVF-GLGAVGLAVIQGAKAAGASRIIGID--INPDKFELAKKFGATDC 235 (368)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEe--CCHHHHHHHHHcCCCEE
Confidence 34556777677776 4688999999999999985344432 24567777788888543
No 195
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=61.91 E-value=93 Score=29.90 Aligned_cols=56 Identities=16% Similarity=0.160 Sum_probs=39.7
Q ss_pred CCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 020528 69 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 69 g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 124 (325)
+++.+|+..+|.-|.++|....+.|.+++++-...............+.+.+.++-
T Consensus 210 g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv 265 (450)
T PRK08261 210 GKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRVGGTALALDI 265 (450)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEeC
Confidence 34778888889999999999989999977764433233333344556777777775
No 196
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=61.79 E-value=81 Score=25.77 Aligned_cols=75 Identities=19% Similarity=0.278 Sum_probs=50.2
Q ss_pred CCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecC---------CCCHHHHHHHHH
Q 020528 44 PCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA---------SMSLERRMVLLA 114 (325)
Q Consensus 44 ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~---------~~~~~~~~~~~~ 114 (325)
|.--+-++.....+.+|.+.|. +.-||.+|+|-++.-+.-+... .++++++.-. ..+.+-.+.++-
T Consensus 7 pG~eNT~~tle~a~erA~elgi----k~~vVAS~tG~tA~k~lemveg-~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~e 81 (186)
T COG1751 7 PGKENTDETLEIAVERAKELGI----KHIVVASSTGYTALKALEMVEG-DLKVVVVTHHAGFEEKGTQEMDEEVRKELKE 81 (186)
T ss_pred CcccchHHHHHHHHHHHHhcCc----ceEEEEecccHHHHHHHHhccc-CceEEEEEeecccccCCceecCHHHHHHHHH
Confidence 4455677888888899999886 2344455558777655444332 2888877642 146777888888
Q ss_pred cCCEEEEeC
Q 020528 115 FGAELVLTD 123 (325)
Q Consensus 115 ~Ga~v~~~~ 123 (325)
.|++|..-.
T Consensus 82 rGa~v~~~s 90 (186)
T COG1751 82 RGAKVLTQS 90 (186)
T ss_pred cCceeeeeh
Confidence 899886544
No 197
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=61.76 E-value=35 Score=32.12 Aligned_cols=55 Identities=33% Similarity=0.377 Sum_probs=41.6
Q ss_pred CCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 020528 64 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (325)
Q Consensus 64 g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 121 (325)
..+.++.+.+|...+|..|.+++..++.+|.+.+++. .+..+...++.+|++.+.
T Consensus 189 ~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~---~s~~~~~~~~~~G~~~~i 243 (393)
T cd08246 189 NTVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVV---SSEEKAEYCRALGAEGVI 243 (393)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEe---CCHHHHHHHHHcCCCEEE
Confidence 3456666766766679999999999999999976553 356778888889986543
No 198
>PRK07791 short chain dehydrogenase; Provisional
Probab=61.74 E-value=88 Score=27.96 Aligned_cols=72 Identities=19% Similarity=0.240 Sum_probs=44.0
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCC----------CCHHHHHHHHHcCCEEEEeCCC-CChhHHHHHHHHH
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS----------MSLERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEI 138 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~----------~~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~ 138 (325)
+..+|+..++--|.++|......|.+++++.... ......+.++..|.++..+..+ .+.++..+...+.
T Consensus 7 k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 86 (286)
T PRK07791 7 RVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLVDAA 86 (286)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHH
Confidence 4678888888899999999999999877664321 0112234455667776655432 2334444444444
Q ss_pred HHh
Q 020528 139 RDK 141 (325)
Q Consensus 139 ~~~ 141 (325)
.++
T Consensus 87 ~~~ 89 (286)
T PRK07791 87 VET 89 (286)
T ss_pred HHh
Confidence 444
No 199
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=61.68 E-value=75 Score=27.28 Aligned_cols=54 Identities=9% Similarity=0.200 Sum_probs=37.9
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCC--CHHHHHHHHHcCCEEEEeC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM--SLERRMVLLAFGAELVLTD 123 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~--~~~~~~~~~~~Ga~v~~~~ 123 (325)
+..+|+.++|.-|.++|......|.+++++...+. .......++..|.++....
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASE 59 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEE
Confidence 36788999999999999999999988766554332 1223455566788776544
No 200
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=61.66 E-value=93 Score=28.13 Aligned_cols=55 Identities=18% Similarity=0.126 Sum_probs=39.3
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCC--CHHHHHHHHHcCCEEEEeCC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM--SLERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~--~~~~~~~~~~~Ga~v~~~~~ 124 (325)
+..||+..+|.-|.++|......|.++++.-.... .......++..|.+++.+..
T Consensus 13 k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~ 69 (306)
T PRK07792 13 KVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAG 69 (306)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeC
Confidence 47788999999999999998888998766543221 12334566777888877654
No 201
>PLN02342 ornithine carbamoyltransferase
Probab=61.61 E-value=49 Score=30.98 Aligned_cols=61 Identities=16% Similarity=0.220 Sum_probs=41.4
Q ss_pred HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCC--CHHHHHHHHHcCC-EEEEeC
Q 020528 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM--SLERRMVLLAFGA-ELVLTD 123 (325)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~--~~~~~~~~~~~Ga-~v~~~~ 123 (325)
+.|.+. |.+..+.+-..|...|++.+++++|++++++.|+.. +...++.++.+|. ++..++
T Consensus 188 ~~G~l~-glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~ 251 (348)
T PLN02342 188 HIGRLE-GTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITN 251 (348)
T ss_pred HhCCcC-CCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEc
Confidence 456543 334444444468889999999999999999999873 4445556666774 666554
No 202
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=61.56 E-value=67 Score=29.14 Aligned_cols=48 Identities=25% Similarity=0.331 Sum_probs=29.3
Q ss_pred eEEEe-cCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 020528 71 SVLIE-PTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (325)
Q Consensus 71 ~~vv~-~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 121 (325)
+.++. ..+|..|.++...|+.+|.+.+++.+ +..+.+.++.+|++-++
T Consensus 145 ~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~~i 193 (324)
T cd08291 145 KAVVHTAAASALGRMLVRLCKADGIKVINIVR---RKEQVDLLKKIGAEYVL 193 (324)
T ss_pred cEEEEccCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEEE
Confidence 44443 56677777777778888876444322 35566666667765433
No 203
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=61.32 E-value=56 Score=29.79 Aligned_cols=53 Identities=26% Similarity=0.357 Sum_probs=36.9
Q ss_pred CCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 020528 64 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119 (325)
Q Consensus 64 g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 119 (325)
..+.++...+|. ++|..|.+++..++.+|+..++++ .....+...++.+|+.+
T Consensus 163 ~~~~~~~~vlI~-g~g~vg~~~~~~a~~~g~~~v~~~--~~~~~~~~~~~~~g~~~ 215 (344)
T cd08284 163 AQVRPGDTVAVI-GCGPVGLCAVLSAQVLGAARVFAV--DPVPERLERAAALGAEP 215 (344)
T ss_pred cCCccCCEEEEE-CCcHHHHHHHHHHHHcCCceEEEE--cCCHHHHHHHHHhCCeE
Confidence 445566676776 578999999999999998434444 33456677777788753
No 204
>PRK09134 short chain dehydrogenase; Provisional
Probab=61.31 E-value=86 Score=27.24 Aligned_cols=54 Identities=19% Similarity=0.241 Sum_probs=37.6
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCH--HHHHHHHHcCCEEEEeC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL--ERRMVLLAFGAELVLTD 123 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~--~~~~~~~~~Ga~v~~~~ 123 (325)
++.+|+..+|.-|.+++....+.|..++++...+.+. .-...++..|.+++.+.
T Consensus 10 k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (258)
T PRK09134 10 RAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQ 65 (258)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 4678999999999999999999999887765543211 12233445577776654
No 205
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=61.02 E-value=66 Score=27.60 Aligned_cols=55 Identities=20% Similarity=0.105 Sum_probs=37.1
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCC-CHHHHHHHHHcCCEEEEeCC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM-SLERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~-~~~~~~~~~~~Ga~v~~~~~ 124 (325)
.+.+|+..+|.-|.++|......|.+++++.+... .....+.++..|.++..+..
T Consensus 6 ~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 61 (253)
T PRK08217 6 KVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAA 61 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEc
Confidence 36788888899999999998889988665543221 12233445666887766543
No 206
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=60.93 E-value=78 Score=27.21 Aligned_cols=55 Identities=13% Similarity=0.154 Sum_probs=38.1
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS--LERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~ 124 (325)
++.+|+..+|--|.++|......|..+++....... ......++..|.+++.+..
T Consensus 7 ~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 63 (247)
T PRK12935 7 KVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQA 63 (247)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEEC
Confidence 367888989999999999988899887765433211 1223455667778876654
No 207
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=60.84 E-value=97 Score=25.89 Aligned_cols=116 Identities=13% Similarity=0.087 Sum_probs=62.5
Q ss_pred HHHHHHHHHHcCCeEEEEecC-CCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEe--CCCCCCcchH
Q 020528 82 GIGLAFMAAAKGYRLIITMPA-SMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVL--QQFENPANPK 158 (325)
Q Consensus 82 g~alA~~a~~~g~~~~i~~p~-~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~n~~~~~ 158 (325)
|..+.++++.+|.+..--++. +.-..-++.....|..|.++++. .....+.++.+.++.++.-.. +.|.++.
T Consensus 13 G~~iv~~~r~~g~~~~~Rv~G~dl~~~l~~~~~~~~~~vfllG~~--~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~--- 87 (177)
T TIGR00696 13 GIGVVWGLKLLGYPQQSRVAGPDLMEELCQRAGKEKLPIFLYGGK--PDVLQQLKVKLIKEYPKLKIVGAFGPLEPE--- 87 (177)
T ss_pred cHHHHHHHHHcCCCCCCccChHHHHHHHHHHHHHcCCeEEEECCC--HHHHHHHHHHHHHHCCCCEEEEECCCCChH---
Confidence 466788999998764322221 12234445556788899999863 344455556666666654322 3332211
Q ss_pred hHHhchHHHHHhhhC-CCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEE
Q 020528 159 IHYETTGPEIWKGTG-GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGV 208 (325)
Q Consensus 159 ~g~~t~~~Ei~~ql~-~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV 208 (325)
- -.++++++. ..||.++|+.|+---=.=+.+ .+...+..-++||
T Consensus 88 -~----~~~i~~~I~~s~~dil~VglG~PkQE~~~~~-~~~~~~~~v~~gv 132 (177)
T TIGR00696 88 -E----RKAALAKIARSGAGIVFVGLGCPKQEIWMRN-HRHLKPDAVMIGV 132 (177)
T ss_pred -H----HHHHHHHHHHcCCCEEEEEcCCcHhHHHHHH-hHHhCCCcEEEEe
Confidence 1 123445442 369999999988542211222 3333444455554
No 208
>PRK08643 acetoin reductase; Validated
Probab=60.79 E-value=74 Score=27.55 Aligned_cols=54 Identities=13% Similarity=0.153 Sum_probs=36.4
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCH-HHHHHHHHcCCEEEEeCC
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL-ERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~-~~~~~~~~~Ga~v~~~~~ 124 (325)
..+|+.++|.-|.++|......|.+++++....... .....++..|.+++.+..
T Consensus 4 ~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 58 (256)
T PRK08643 4 VALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKA 58 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEC
Confidence 678888899999999999888998876664332211 222344556777766653
No 209
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=60.64 E-value=70 Score=29.23 Aligned_cols=50 Identities=26% Similarity=0.246 Sum_probs=34.8
Q ss_pred CCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020528 66 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 118 (325)
Q Consensus 66 ~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 118 (325)
+.+|.+.+|.+ +|..|.+++..|+.+|.+.++++ +.+..+...++.+|++
T Consensus 159 ~~~g~~vlI~~-~g~vg~~a~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~ 208 (340)
T TIGR00692 159 PISGKSVLVTG-AGPIGLMAIAVAKASGAYPVIVS--DPNEYRLELAKKMGAT 208 (340)
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCCc
Confidence 45666767754 57788888888888998744444 3356777777777774
No 210
>PRK08278 short chain dehydrogenase; Provisional
Probab=60.55 E-value=90 Score=27.57 Aligned_cols=55 Identities=18% Similarity=0.237 Sum_probs=38.6
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC--------HHHHHHHHHcCCEEEEeCC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS--------LERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~--------~~~~~~~~~~Ga~v~~~~~ 124 (325)
+..+|+..+|--|.++|......|.+++++.....+ ......++..|.+++.+..
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 69 (273)
T PRK08278 7 KTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVG 69 (273)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEe
Confidence 467888888999999999999999988777654321 1112345667877766643
No 211
>PLN02740 Alcohol dehydrogenase-like
Probab=60.53 E-value=52 Score=30.85 Aligned_cols=55 Identities=25% Similarity=0.236 Sum_probs=37.6
Q ss_pred HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 020528 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119 (325)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 119 (325)
+...+++|.+.+|. +.|.-|.+++..|+.+|.+-++.+. .+..+++.++.+|++.
T Consensus 192 ~~~~~~~g~~VlV~-G~G~vG~~a~q~ak~~G~~~Vi~~~--~~~~r~~~a~~~Ga~~ 246 (381)
T PLN02740 192 NTANVQAGSSVAIF-GLGAVGLAVAEGARARGASKIIGVD--INPEKFEKGKEMGITD 246 (381)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHCCCCcEEEEc--CChHHHHHHHHcCCcE
Confidence 34556777666665 4688998888889999985333332 2456777778888854
No 212
>PRK08862 short chain dehydrogenase; Provisional
Probab=60.47 E-value=66 Score=27.74 Aligned_cols=53 Identities=15% Similarity=0.082 Sum_probs=34.5
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEe
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLT 122 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~ 122 (325)
+..+|+..++.-|.++|......|.+++++-..... ....+.++..|.+++.+
T Consensus 6 k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~ 59 (227)
T PRK08862 6 SIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSF 59 (227)
T ss_pred eEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEE
Confidence 367888888889999999999999986665332211 12234455566666544
No 213
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=60.39 E-value=49 Score=30.86 Aligned_cols=45 Identities=20% Similarity=0.192 Sum_probs=36.0
Q ss_pred ChhHHHHHHH-HHHcCCeEEEEecCC--CCHHHHHHHHHcCCEEEEeC
Q 020528 79 GNTGIGLAFM-AAAKGYRLIITMPAS--MSLERRMVLLAFGAELVLTD 123 (325)
Q Consensus 79 GN~g~alA~~-a~~~g~~~~i~~p~~--~~~~~~~~~~~~Ga~v~~~~ 123 (325)
+|.+.|++.. ++.+|++++++.|+. .+...++.++..|.++..+.
T Consensus 171 ~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~ 218 (338)
T PRK08192 171 GRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITD 218 (338)
T ss_pred CchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEc
Confidence 6889999976 667799999999987 35555667777898888776
No 214
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=60.25 E-value=55 Score=29.98 Aligned_cols=61 Identities=23% Similarity=0.268 Sum_probs=40.4
Q ss_pred HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCC--CHHHHHH-HHHcCCEEEEeC
Q 020528 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM--SLERRMV-LLAFGAELVLTD 123 (325)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~--~~~~~~~-~~~~Ga~v~~~~ 123 (325)
+.|.+. |.+..+++-.+|...|++..++++|++++++.|+.. +...++. .+..|.++...+
T Consensus 146 ~~g~l~-gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~ 209 (304)
T PRK00779 146 HRGSLK-GLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTH 209 (304)
T ss_pred HhCCcC-CcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEc
Confidence 356543 334334444578999999999999999999999873 2333333 466788887665
No 215
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=60.18 E-value=64 Score=31.37 Aligned_cols=53 Identities=9% Similarity=-0.079 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecC
Q 020528 50 DRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 102 (325)
Q Consensus 50 ~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~ 102 (325)
-+|..+.+..+.+.--.....++|+..+.||-|..+|.....+|.+++.+...
T Consensus 217 G~Gv~~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~ 269 (454)
T PTZ00079 217 GYGLVYFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDS 269 (454)
T ss_pred HHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcC
Confidence 45677777766543322323367888999999999999988888888766543
No 216
>PRK06181 short chain dehydrogenase; Provisional
Probab=60.10 E-value=65 Score=28.06 Aligned_cols=54 Identities=22% Similarity=0.255 Sum_probs=36.8
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCC
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~ 124 (325)
+.+|+..+|.-|.+++......|.+++++...... ....+.++..|.+++.+..
T Consensus 3 ~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~ 57 (263)
T PRK06181 3 VVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPT 57 (263)
T ss_pred EEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEc
Confidence 56888888999999999988999987766543211 1223345556777766543
No 217
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=59.88 E-value=1.3e+02 Score=26.79 Aligned_cols=54 Identities=28% Similarity=0.376 Sum_probs=37.2
Q ss_pred hCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 020528 63 KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119 (325)
Q Consensus 63 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 119 (325)
.+.+.+|...+|...+|..|.++...|+..|.+++.+.+ +..+...++.+|++-
T Consensus 137 ~~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~ 190 (320)
T cd08243 137 SLGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTR---SPERAALLKELGADE 190 (320)
T ss_pred hcCCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhcCCcE
Confidence 344566667777777799999999999999988554433 245556666677643
No 218
>PRK05876 short chain dehydrogenase; Provisional
Probab=59.82 E-value=75 Score=28.20 Aligned_cols=72 Identities=15% Similarity=0.065 Sum_probs=43.0
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCC-CChhHHHHHHHHHHHh
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRDK 141 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 141 (325)
+..+|+.++|--|.++|......|.+++++...... ......++..|.++..+..+ .+.++..+...+..++
T Consensus 7 k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 80 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRL 80 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 467889889999999999988999986655332111 12233455667777655432 2333334444443333
No 219
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=59.79 E-value=82 Score=27.45 Aligned_cols=54 Identities=15% Similarity=0.155 Sum_probs=38.5
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS--LERRMVLLAFGAELVLTD 123 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~ 123 (325)
++.+|+.++|.-|.++|......|.++++....+.+ ......++..|.++..+.
T Consensus 8 k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~ 63 (261)
T PRK08936 8 KVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVK 63 (261)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEE
Confidence 477889999999999999999999987776554322 222345566687776554
No 220
>PRK07478 short chain dehydrogenase; Provisional
Probab=59.65 E-value=69 Score=27.76 Aligned_cols=72 Identities=17% Similarity=0.099 Sum_probs=44.0
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCC-CChhHHHHHHHHHHHh
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRDK 141 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 141 (325)
++.+|+..+|.-|.++|..-...|.+++++.....+ ......++..|.++..+..+ .+.++..+...++.++
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVER 80 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 367888888999999999988899987666433211 11233455667777665432 2334444444444444
No 221
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=59.16 E-value=78 Score=27.28 Aligned_cols=55 Identities=15% Similarity=0.207 Sum_probs=38.4
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~ 124 (325)
++.+|+..+|..|.+++..-...|.+++++.....+ ......++..+.+++.+..
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 60 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAM 60 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEc
Confidence 467889989999999999988889988777554322 2223445566777665543
No 222
>PRK07806 short chain dehydrogenase; Provisional
Probab=58.95 E-value=98 Score=26.57 Aligned_cols=55 Identities=15% Similarity=0.162 Sum_probs=36.9
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS--LERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~ 124 (325)
++.+|+..+|--|.+++......|.+++++...... ......++..|.+++.+..
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~ 63 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGA 63 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEc
Confidence 467888888999999999988899998776543211 1112334555776665543
No 223
>PRK10083 putative oxidoreductase; Provisional
Probab=58.81 E-value=1e+02 Score=27.94 Aligned_cols=58 Identities=17% Similarity=0.157 Sum_probs=40.2
Q ss_pred HHHhCCCCCCCeEEEecCCChhHHHHHHHHHH-cCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 020528 60 AEEKGLIRPGESVLIEPTSGNTGIGLAFMAAA-KGYRLIITMPASMSLERRMVLLAFGAELV 120 (325)
Q Consensus 60 a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~-~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 120 (325)
+.+...+.+|.+.+|.. +|--|.+++..|+. +|.+.++.+.. ...|..+++.+|++-+
T Consensus 152 ~~~~~~~~~g~~vlI~g-~g~vG~~~~~~a~~~~G~~~v~~~~~--~~~~~~~~~~~Ga~~~ 210 (339)
T PRK10083 152 VTGRTGPTEQDVALIYG-AGPVGLTIVQVLKGVYNVKAVIVADR--IDERLALAKESGADWV 210 (339)
T ss_pred HHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHhCCCCEEEEEcC--CHHHHHHHHHhCCcEE
Confidence 34455667776666655 67788888888885 59876665543 5677888888888543
No 224
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=58.81 E-value=74 Score=29.57 Aligned_cols=57 Identities=21% Similarity=0.232 Sum_probs=39.3
Q ss_pred HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 020528 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (325)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 121 (325)
+...+.+|.+.+|. ++|..|.+++..++.+|...++.+.. ...+.+.++.+|++.+.
T Consensus 181 ~~~~~~~g~~VlV~-G~g~vG~~a~q~ak~~G~~~vi~~~~--~~~~~~~~~~~Ga~~~i 237 (369)
T cd08301 181 NVAKVKKGSTVAIF-GLGAVGLAVAEGARIRGASRIIGVDL--NPSKFEQAKKFGVTEFV 237 (369)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHcCCceEE
Confidence 33556777676666 46899999999999999843334332 35677788889985433
No 225
>PRK08303 short chain dehydrogenase; Provisional
Probab=58.59 E-value=85 Score=28.52 Aligned_cols=72 Identities=17% Similarity=0.141 Sum_probs=44.0
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCC-----------CHHHHHHHHHcCCEEEEeCCC-CChhHHHHHHHH
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM-----------SLERRMVLLAFGAELVLTDPA-RGMKGAVQKAEE 137 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~-----------~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~ 137 (325)
+..+|+..++--|.++|......|.+++++-.... -....+.++..|.+++.+..+ .+.++..+.+.+
T Consensus 9 k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~ 88 (305)
T PRK08303 9 KVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRALVER 88 (305)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 46788888888999999998889998776644311 122334566677766655432 234444444444
Q ss_pred HHHh
Q 020528 138 IRDK 141 (325)
Q Consensus 138 ~~~~ 141 (325)
..+.
T Consensus 89 ~~~~ 92 (305)
T PRK08303 89 IDRE 92 (305)
T ss_pred HHHH
Confidence 4443
No 226
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=58.10 E-value=94 Score=26.83 Aligned_cols=54 Identities=24% Similarity=0.333 Sum_probs=37.5
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCC
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS--LERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~ 124 (325)
..+|+..+|.-|.++|..-...|.+++++.....+ ......++..+.++..+..
T Consensus 4 ~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (256)
T PRK12745 4 VALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPA 59 (256)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEe
Confidence 56888999999999999988889988776544322 2234445556776666543
No 227
>PRK07035 short chain dehydrogenase; Provisional
Probab=58.07 E-value=87 Score=27.05 Aligned_cols=54 Identities=17% Similarity=0.163 Sum_probs=36.1
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTD 123 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~ 123 (325)
++.+|+..+|.-|.+++......|.+++++-..... ....+.+...|.++..+.
T Consensus 9 k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~ 63 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALA 63 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 367899999999999999999999987766442211 122334445566665543
No 228
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=58.02 E-value=99 Score=26.27 Aligned_cols=55 Identities=24% Similarity=0.213 Sum_probs=37.6
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHH-HHHHHHHcCCEEEEeCC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLE-RRMVLLAFGAELVLTDP 124 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~-~~~~~~~~Ga~v~~~~~ 124 (325)
++.+|+..+|..|..++......|.+++++.....+.. ....++..|.++..+..
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 61 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVF 61 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEc
Confidence 36788898999999999998888999655544322221 23445567877776543
No 229
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=57.94 E-value=41 Score=32.57 Aligned_cols=53 Identities=15% Similarity=0.062 Sum_probs=41.2
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCC-----CCHHHHHHHHHcCCEEEEeC
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS-----MSLERRMVLLAFGAELVLTD 123 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~-----~~~~~~~~~~~~Ga~v~~~~ 123 (325)
+.|+.-++||.|.-+|..+.++|.+++++.... .....++.++..|.+++...
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~l~~~GV~~~~~~ 330 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTARVEEIAHAEEEGVKFHFLC 330 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEecc
Confidence 467788899999999999999999999887653 23344566778888877543
No 230
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=57.80 E-value=71 Score=28.89 Aligned_cols=54 Identities=15% Similarity=0.145 Sum_probs=37.5
Q ss_pred HHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020528 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 118 (325)
Q Consensus 61 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 118 (325)
.+...+.++...+|. ..|..|.+++..++..|++++++.+. ..+...++.+|++
T Consensus 160 ~~~~~~~~~~~vlV~-g~g~vg~~~~~la~~~g~~v~~~~~~---~~~~~~~~~~g~~ 213 (329)
T cd08298 160 LKLAGLKPGQRLGLY-GFGASAHLALQIARYQGAEVFAFTRS---GEHQELARELGAD 213 (329)
T ss_pred HHhhCCCCCCEEEEE-CCcHHHHHHHHHHHHCCCeEEEEcCC---hHHHHHHHHhCCc
Confidence 355666777676665 57888989888999999876655443 3566666777763
No 231
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=57.52 E-value=57 Score=29.11 Aligned_cols=53 Identities=9% Similarity=-0.096 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecC
Q 020528 50 DRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 102 (325)
Q Consensus 50 ~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~ 102 (325)
-||..+.+..+.+.-......++|+..+.||-|..+|.....+|.+++.+...
T Consensus 18 g~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~ 70 (254)
T cd05313 18 GYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDS 70 (254)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 35677777766544333333367888999999999999999999888877653
No 232
>PRK06194 hypothetical protein; Provisional
Probab=57.23 E-value=96 Score=27.43 Aligned_cols=55 Identities=22% Similarity=0.237 Sum_probs=37.0
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~ 124 (325)
++.+|+.++|.-|.++|......|.+++++-..... ......+...|.+++.+..
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 62 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRT 62 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEEC
Confidence 367899999999999999988899987665432111 2223344555777766654
No 233
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=57.16 E-value=95 Score=27.80 Aligned_cols=53 Identities=26% Similarity=0.286 Sum_probs=35.8
Q ss_pred HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCC
Q 020528 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGA 117 (325)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga 117 (325)
+.+.+.++.+.+|...+|..|.+++..|+.+|.+.++..+. ..+...++.+|+
T Consensus 132 ~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~ 184 (323)
T cd05282 132 EYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRR---DEQVEELKALGA 184 (323)
T ss_pred HhccCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecC---hHHHHHHHhcCC
Confidence 33445666676776677889999999999999886655443 244555566665
No 234
>PRK08017 oxidoreductase; Provisional
Probab=57.14 E-value=1.1e+02 Score=26.26 Aligned_cols=51 Identities=25% Similarity=0.343 Sum_probs=38.1
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 124 (325)
+.+|+..+|.-|.+++......|.+++++.. +..+.+.++..|++.+.++-
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r---~~~~~~~~~~~~~~~~~~D~ 54 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACR---KPDDVARMNSLGFTGILLDL 54 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeC---CHHHhHHHHhCCCeEEEeec
Confidence 5688888899999999998888998766543 23455556667887777664
No 235
>PRK05866 short chain dehydrogenase; Provisional
Probab=57.11 E-value=74 Score=28.61 Aligned_cols=54 Identities=13% Similarity=0.047 Sum_probs=36.0
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCC
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~ 124 (325)
+.+|+..+|--|.++|......|.+++++...... ......+...|.++..+..
T Consensus 42 ~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~ 96 (293)
T PRK05866 42 RILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPC 96 (293)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEc
Confidence 67888888999999999988899987776543211 1222344445666655543
No 236
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=57.10 E-value=89 Score=27.05 Aligned_cols=55 Identities=20% Similarity=0.073 Sum_probs=36.1
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~ 124 (325)
+..+|+..+|.-|.++|....+.|.+++++-..... ......++..+.++..+..
T Consensus 10 k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~ 65 (254)
T PRK08085 10 KNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPF 65 (254)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEec
Confidence 367899999999999999988899887765432111 1122344555666665543
No 237
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=56.88 E-value=83 Score=27.24 Aligned_cols=55 Identities=16% Similarity=0.186 Sum_probs=36.6
Q ss_pred CCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeC
Q 020528 69 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTD 123 (325)
Q Consensus 69 g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~ 123 (325)
+++.+|+..+|.-|.++|......|.+++++...... ..-...++..|.++..+.
T Consensus 11 ~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 66 (256)
T PRK06124 11 GQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALA 66 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEE
Confidence 3477888889999999999988899987766543211 122334555676555554
No 238
>PRK07454 short chain dehydrogenase; Provisional
Probab=56.76 E-value=77 Score=27.16 Aligned_cols=71 Identities=15% Similarity=0.138 Sum_probs=42.5
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCC-CChhHHHHHHHHHHHh
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTDPA-RGMKGAVQKAEEIRDK 141 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 141 (325)
+.+|+.++|..|.+++......|.+++++...... ......++..+.++..+..+ .+.++..+...+..+.
T Consensus 8 ~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (241)
T PRK07454 8 RALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQ 80 (241)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 56888888999999999999999987776543211 11223344556666555432 2334443444444433
No 239
>PRK06197 short chain dehydrogenase; Provisional
Probab=56.61 E-value=1.5e+02 Score=26.62 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=25.6
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEec
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMP 101 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p 101 (325)
+..+|+.++|--|.++|......|.+++++.+
T Consensus 17 k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r 48 (306)
T PRK06197 17 RVAVVTGANTGLGYETAAALAAKGAHVVLAVR 48 (306)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 36788888888999999888888988766654
No 240
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=56.52 E-value=1.1e+02 Score=26.26 Aligned_cols=33 Identities=27% Similarity=0.379 Sum_probs=27.3
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 102 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~ 102 (325)
++.+|+.++|..|.+++......|.+++++...
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~ 38 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEGARVVVTDRN 38 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 367899999999999999988899996666443
No 241
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=56.26 E-value=46 Score=27.33 Aligned_cols=51 Identities=24% Similarity=0.310 Sum_probs=40.5
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 124 (325)
..|+..++|+-|...+..+..+|.+.+++ +....+++..+..++..+.++.
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~---d~~~~~~~~~~~~~~~~i~~~~ 71 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVP---DERPERLRQLESLGAYFIEVDY 71 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEE---ESSHHHHHHHHHTTTEESEETT
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEec---cCCHHHHHhhhcccCceEEEcc
Confidence 35677889999999999999999997766 3357778888999998888863
No 242
>PRK07890 short chain dehydrogenase; Provisional
Probab=56.11 E-value=85 Score=27.12 Aligned_cols=55 Identities=16% Similarity=0.166 Sum_probs=36.4
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~ 124 (325)
++.+|+.++|.-|.++|......|.+++++...... ......++..|.++..+..
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 61 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPT 61 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEec
Confidence 477899999999999999999999987666432211 1222334445666655543
No 243
>PRK05867 short chain dehydrogenase; Provisional
Probab=55.94 E-value=87 Score=27.12 Aligned_cols=54 Identities=17% Similarity=0.097 Sum_probs=35.6
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTD 123 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~ 123 (325)
+..+|+.++|.-|.++|......|.+++++-..... ......++..|.++..+.
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~ 64 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVC 64 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 367888888999999999988899987665332111 122334455676665554
No 244
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=55.80 E-value=1.1e+02 Score=27.56 Aligned_cols=52 Identities=31% Similarity=0.466 Sum_probs=37.4
Q ss_pred CCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020528 64 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 118 (325)
Q Consensus 64 g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 118 (325)
..+.++.+.+|...+|..|.+++..++..|.+++++.. ...+...++.+|++
T Consensus 158 ~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~~~~ 209 (332)
T cd08259 158 AGVKKGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTR---SPEKLKILKELGAD 209 (332)
T ss_pred hCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeC---CHHHHHHHHHcCCc
Confidence 55667767788888899999999999999988766643 23445555666653
No 245
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=55.80 E-value=93 Score=26.79 Aligned_cols=54 Identities=17% Similarity=0.159 Sum_probs=37.1
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCC
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~ 124 (325)
+.+|+..+|.-|.++|......|.+++++-..... ....+.++..|.++..+..
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~ 56 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKL 56 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEc
Confidence 46788888999999999998999986665433211 2233456667877766653
No 246
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=55.68 E-value=91 Score=26.67 Aligned_cols=55 Identities=16% Similarity=0.148 Sum_probs=38.1
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~ 124 (325)
++.+|+.++|.-|.+++......|.+++++.....+ ......++..+.++..+..
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~ 62 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQV 62 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEC
Confidence 467888989999999999988889887766543211 2333455666776666553
No 247
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=55.36 E-value=82 Score=29.82 Aligned_cols=90 Identities=13% Similarity=0.202 Sum_probs=42.1
Q ss_pred CeEEEEecCCCCHHHHHHHHHcCC-EEEEeCCCCChh--HHHHHHHHHHHhCCC-eEEeCCC-CCCcchHhHHhchHHHH
Q 020528 94 YRLIITMPASMSLERRMVLLAFGA-ELVLTDPARGMK--GAVQKAEEIRDKTPN-SYVLQQF-ENPANPKIHYETTGPEI 168 (325)
Q Consensus 94 ~~~~i~~p~~~~~~~~~~~~~~Ga-~v~~~~~~~~~~--~~~~~a~~~~~~~~~-~~~~~~~-~n~~~~~~g~~t~~~Ei 168 (325)
.|..|+.-.+.-..--..++.+|. ++.++.+. ... +..+...+..++.+- ....+.. .||.. -...-+.|+
T Consensus 8 ~p~~i~~G~g~~~~l~~~~~~~g~~~~livt~~-~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~---~~v~~~~~~ 83 (383)
T PRK09860 8 IPSVNVIGADSLTDAMNMMADYGFTRTLIVTDN-MLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTT---ENVAAGLKL 83 (383)
T ss_pred cCCeEEECcCHHHHHHHHHHhcCCCEEEEEcCc-chhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCH---HHHHHHHHH
Confidence 344455554444444455666774 55555432 121 234445554444421 1122111 13331 122233455
Q ss_pred HhhhCCCCCEEEEecCCchhHH
Q 020528 169 WKGTGGKIDALVSGIGTGGTVT 190 (325)
Q Consensus 169 ~~ql~~~~D~iv~pvG~Gg~~a 190 (325)
+++ .++| +|+++|+|+.+=
T Consensus 84 ~~~--~~~D-~IiaiGGGS~iD 102 (383)
T PRK09860 84 LKE--NNCD-SVISLGGGSPHD 102 (383)
T ss_pred HHH--cCCC-EEEEeCCchHHH
Confidence 554 3689 577899888763
No 248
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=55.28 E-value=77 Score=29.02 Aligned_cols=61 Identities=18% Similarity=0.232 Sum_probs=37.4
Q ss_pred HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCC--CHHHHHHH----HHcCCEEEEeC
Q 020528 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM--SLERRMVL----LAFGAELVLTD 123 (325)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~--~~~~~~~~----~~~Ga~v~~~~ 123 (325)
+.|.+. |.+..+++-.+|...|++..++++|++++++.|+.. +...++.+ +..|.++...+
T Consensus 142 ~~g~l~-g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 208 (304)
T TIGR00658 142 HFGKLK-GVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTH 208 (304)
T ss_pred HhCCCC-CcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 345432 323333333368888888888888888888888762 33333333 45677776664
No 249
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=55.17 E-value=1e+02 Score=27.81 Aligned_cols=54 Identities=28% Similarity=0.321 Sum_probs=35.9
Q ss_pred hCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 020528 63 KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120 (325)
Q Consensus 63 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 120 (325)
...+.++.+.+|. ..|..|.+++..++..|++++++.+ +..+...++.+|++.+
T Consensus 157 ~~~~~~~~~vlI~-g~g~iG~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~~ 210 (330)
T cd08245 157 DAGPRPGERVAVL-GIGGLGHLAVQYARAMGFETVAITR---SPDKRELARKLGADEV 210 (330)
T ss_pred hhCCCCCCEEEEE-CCCHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHhCCcEE
Confidence 3445666666666 4566999888889999988655533 3455666666776443
No 250
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=55.12 E-value=1.3e+02 Score=25.26 Aligned_cols=114 Identities=12% Similarity=0.012 Sum_probs=58.9
Q ss_pred HhchHHHHHhhhCCCCCEEEEecCC-chhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCCCcccccCCCCCCccccc
Q 020528 161 YETTGPEIWKGTGGKIDALVSGIGT-GGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLD 239 (325)
Q Consensus 161 ~~t~~~Ei~~ql~~~~D~iv~pvG~-Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~ 239 (325)
|...+.|+-+.+. +.++.+|.-|+ .|++-.++++.++.+ -+++||-|..-... ...
T Consensus 17 ~~~~A~~lG~~la-~~g~~lV~GGg~~GlM~a~a~ga~~~g--G~viGi~p~~l~~~--------------------~~~ 73 (178)
T TIGR00730 17 YKELAAELGAYLA-GQGWGLVYGGGRVGLMGAIADAAMENG--GTAVGVNPSGLFSG--------------------EVV 73 (178)
T ss_pred HHHHHHHHHHHHH-HCCCEEEECCChHhHHHHHHHHHHhcC--CeEEEecchhhhhh--------------------hcc
Confidence 4445555555552 33555555554 799988999998744 57899976442100 001
Q ss_pred cccCCeEEEeCHHHHHHHHHHHHHHcCCeeecch---HHHHHHHHHHHhcCCCCCCEEEEEeC
Q 020528 240 VNLLDETVQISSEEAIETAKLLALKEGLLVGISS---GAATAAAIQIAKRPENAGKLIVVVFP 299 (325)
Q Consensus 240 ~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~s---g~a~aa~~~~~~~~~~~~~~vv~i~t 299 (325)
..+++..+.+++-..+... .+....++++=|-+ --=+.-++.+.+-+ ...+.++++..
T Consensus 74 ~~~~~~~i~~~~~~~Rk~~-m~~~sda~I~lPGG~GTL~El~e~~~~~qlg-~~~kPiil~n~ 134 (178)
T TIGR00730 74 HQNLTELIEVNGMHERKAM-MAELADAFIAMPGGFGTLEELFEVLTWAQLG-IHQKPIILFNV 134 (178)
T ss_pred CCCCCceEEECCHHHHHHH-HHHhCCEEEEcCCCcchHHHHHHHHHHHHcC-CCCCCEEEECC
Confidence 1234555556555533332 33334566666632 22233333333433 24556666653
No 251
>PRK07814 short chain dehydrogenase; Provisional
Probab=55.10 E-value=92 Score=27.25 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=35.3
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTD 123 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~ 123 (325)
++.+|+.++|--|.+++......|.+++++...... ......++..|.++..+.
T Consensus 11 ~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~ 65 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVA 65 (263)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 477899999999999999988899987766543211 122233444566655543
No 252
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=55.06 E-value=98 Score=26.57 Aligned_cols=55 Identities=15% Similarity=0.130 Sum_probs=38.0
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCC--CHHHHHHHHHcCCEEEEeCC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM--SLERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~--~~~~~~~~~~~Ga~v~~~~~ 124 (325)
.+.+|+.++|--|.+++......|.++++...... .......++..|.++..+..
T Consensus 7 ~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (252)
T PRK06077 7 KVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLA 63 (252)
T ss_pred cEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEe
Confidence 36788888899999999998889998776554331 12334556677777665543
No 253
>PRK06701 short chain dehydrogenase; Provisional
Probab=55.01 E-value=1.4e+02 Score=26.77 Aligned_cols=55 Identities=18% Similarity=0.180 Sum_probs=38.7
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS--LERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~ 124 (325)
+..+|+..+|.-|.++|....+.|.+++++...... ......++..|.++..+..
T Consensus 47 k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (290)
T PRK06701 47 KVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPG 103 (290)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEc
Confidence 367888888999999999988899998766554322 2334455667877766543
No 254
>PRK06949 short chain dehydrogenase; Provisional
Probab=54.99 E-value=83 Score=27.21 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=26.9
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEec
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMP 101 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p 101 (325)
++.+|+.++|.-|.+++......|.+++++..
T Consensus 10 k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r 41 (258)
T PRK06949 10 KVALVTGASSGLGARFAQVLAQAGAKVVLASR 41 (258)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 47788899999999999999889998666644
No 255
>PRK07677 short chain dehydrogenase; Provisional
Probab=54.94 E-value=92 Score=26.96 Aligned_cols=54 Identities=20% Similarity=0.257 Sum_probs=35.1
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTD 123 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~ 123 (325)
++.+|+..+|.-|.++|......|..++++...... ......++..+.+++.+.
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~ 56 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQ 56 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 367888888999999999988999976665432211 122233444566666554
No 256
>PRK06500 short chain dehydrogenase; Provisional
Probab=54.86 E-value=1.2e+02 Score=25.93 Aligned_cols=51 Identities=20% Similarity=0.195 Sum_probs=35.3
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHH-HHHHHcCCEEEEeC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERR-MVLLAFGAELVLTD 123 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~-~~~~~~Ga~v~~~~ 123 (325)
++.+|+..+|.-|.+++......|.+++++.. + ..+. ...+..|.+++.+.
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~v~~~~r-~--~~~~~~~~~~~~~~~~~~~ 58 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGARVAITGR-D--PASLEAARAELGESALVIR 58 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecC-C--HHHHHHHHHHhCCceEEEE
Confidence 47788999999999999999999998766533 2 2222 23344577765554
No 257
>PRK12744 short chain dehydrogenase; Provisional
Probab=54.84 E-value=89 Score=27.15 Aligned_cols=55 Identities=29% Similarity=0.170 Sum_probs=37.2
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCC-CC----HHHHHHHHHcCCEEEEeCC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS-MS----LERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~-~~----~~~~~~~~~~Ga~v~~~~~ 124 (325)
+..+|+..+|.-|.++|..-...|.+++++.... .. ....+.++..|.++..+..
T Consensus 9 k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 68 (257)
T PRK12744 9 KVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQA 68 (257)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEec
Confidence 3678888889999999999888899966665332 11 1223445566777765543
No 258
>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=54.81 E-value=2.3e+02 Score=28.27 Aligned_cols=71 Identities=23% Similarity=0.193 Sum_probs=54.9
Q ss_pred HHHHHHHHHhCC-CCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 020528 54 YSMIADAEEKGL-IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 54 ~~~~~~a~~~g~-~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 124 (325)
..+.....+.|. ++.|....+.+...-+-..++++|-..|..+.-+=|...+.+...+++.-.+++++++.
T Consensus 56 ~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~kiif~d~ 127 (537)
T KOG1176|consen 56 RRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNPRLTASEIAKQLKDSKPKLIFVDE 127 (537)
T ss_pred HHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCcccCHHHHHHHHHhcCCeEEEEcC
Confidence 333344444453 45565666666667777888999999999988888888899999999999999999996
No 259
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=54.72 E-value=96 Score=26.61 Aligned_cols=55 Identities=11% Similarity=0.024 Sum_probs=36.9
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~ 124 (325)
++.+|+.++|.-|.+++......|..++++...... ......++..+.++..+..
T Consensus 4 ~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 59 (250)
T TIGR03206 4 KTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFAC 59 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEc
Confidence 467889999999999999988899887766443211 1122334555666666554
No 260
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=54.69 E-value=94 Score=27.91 Aligned_cols=72 Identities=19% Similarity=0.247 Sum_probs=45.6
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCCCC-ChhHHHHHHHHHHHh
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS--LERRMVLLAFGAELVLTDPAR-GMKGAVQKAEEIRDK 141 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~~ 141 (325)
++.|||..|+.-|.++|...++.|.+++++-+.... ....+.-+.+|.+|...+-+- +.++......++.++
T Consensus 7 ~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~ 81 (265)
T COG0300 7 KTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKER 81 (265)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhc
Confidence 478899999999999999999999999999775421 122222334566665555321 233444444444433
No 261
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=54.67 E-value=1.5e+02 Score=26.02 Aligned_cols=120 Identities=14% Similarity=0.119 Sum_probs=68.2
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHc---CCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchH
Q 020528 82 GIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF---GAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPK 158 (325)
Q Consensus 82 g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~---Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~ 158 (325)
|.+.|.+.+++|+++.++-++..+...+..+..+ |.+|....+... +......+.+..-....+..|.+....
T Consensus 86 G~~Ta~~l~~~G~~~~~~p~~~~~~~l~~~l~~~~~~~~~vl~~~~~~~---r~~l~~~L~~~G~~v~~~~~Y~~~~~~- 161 (248)
T COG1587 86 GEKTAEALRKLGIKVDFIPEDGDSEGLLEELPELLKGGKRVLILRGNGG---REVLEEKLEERGAEVREVEVYRTEPPP- 161 (248)
T ss_pred cHHHHHHHHHhCCCCCcCCCccchHHHHHHhhhhccCCCeEEEEcCCCc---hHHHHHHHHhCCCEEEEEeeeeecCCC-
Confidence 5678888999999988776656777888888877 677777765321 222223333332234556666543321
Q ss_pred hHHhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCC----CcEEEEEec
Q 020528 159 IHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNP----EIKLYGVEP 210 (325)
Q Consensus 159 ~g~~t~~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~----~~~vigV~~ 210 (325)
+. ...++.......+|+|+.. ++.++-.+...+...++ +.+++++-|
T Consensus 162 --~~-~~~~~~~~~~~~~d~v~ft--S~~~v~~~~~~~~~~~~~~~~~~~v~~IG~ 212 (248)
T COG1587 162 --LD-EATLIELLKLGEVDAVVFT--SSSAVRALLALAPESGIEFLERKRVASIGP 212 (248)
T ss_pred --cc-HHHHHHHHHhCCCCEEEEe--CHHHHHHHHHHccccchhHhhCceEEEecH
Confidence 11 1111111112578988776 45556666666665554 256666643
No 262
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=54.47 E-value=95 Score=30.97 Aligned_cols=49 Identities=20% Similarity=0.210 Sum_probs=30.9
Q ss_pred eEEEecCCChhH---HHHHHHHHHcCCeEEEEecCCCCHH----HHHHHHHcCCEE
Q 020528 71 SVLIEPTSGNTG---IGLAFMAAAKGYRLIITMPASMSLE----RRMVLLAFGAEL 119 (325)
Q Consensus 71 ~~vv~~ssGN~g---~alA~~a~~~g~~~~i~~p~~~~~~----~~~~~~~~Ga~v 119 (325)
+.+|.++.||.| ..+|......|.++.|+++...+.. ...+++..|..+
T Consensus 137 ~VlVlcGpGNNGGDGLVaAR~L~~~G~~V~V~~~~~~~~~~~~~~~~~~~~~gi~~ 192 (544)
T PLN02918 137 RVLAICGPGNNGGDGLVAARHLHHFGYKPFVCYPKRTAKPLYTGLVTQLESLSVPF 192 (544)
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHCCCceEEEEcCCCCcHHHHHHHHHHHHcCCCe
Confidence 556666676665 3445556667999999997653322 345566666554
No 263
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=54.46 E-value=1.6e+02 Score=26.41 Aligned_cols=52 Identities=31% Similarity=0.414 Sum_probs=36.6
Q ss_pred hCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCC
Q 020528 63 KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGA 117 (325)
Q Consensus 63 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga 117 (325)
.+.+.++...+|...+|-.|.+++..++..|.+++++.+ +..+...++.+|+
T Consensus 134 ~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~ 185 (329)
T cd08250 134 VGEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCS---SDEKAEFLKSLGC 185 (329)
T ss_pred hcCCCCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeC---cHHHHHHHHHcCC
Confidence 355677777777777888999998899998988555432 3445555566665
No 264
>PRK06198 short chain dehydrogenase; Provisional
Probab=54.23 E-value=1.2e+02 Score=26.18 Aligned_cols=55 Identities=18% Similarity=0.208 Sum_probs=37.4
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCH--HHHHHHHHcCCEEEEeCC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL--ERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~--~~~~~~~~~Ga~v~~~~~ 124 (325)
++.+|+..+|.-|..++......|.+.++++..+... .....++..|.++..+..
T Consensus 7 k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~ 63 (260)
T PRK06198 7 KVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQA 63 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEc
Confidence 3678888889999999999989999855555543221 223355667888765543
No 265
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=54.22 E-value=98 Score=26.86 Aligned_cols=55 Identities=18% Similarity=0.251 Sum_probs=36.6
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~ 124 (325)
++.+|+..+|--|.++|......|.+++++...... ......++..+.+++.+..
T Consensus 13 k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~ 68 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAA 68 (259)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEc
Confidence 367888888999999999988889987655432211 1123344566777766654
No 266
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=54.22 E-value=1.1e+02 Score=25.86 Aligned_cols=55 Identities=15% Similarity=0.178 Sum_probs=38.4
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCH--HHHHHHHHcCCEEEEeCC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL--ERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~--~~~~~~~~~Ga~v~~~~~ 124 (325)
++.+|+..+|.-|.+++......|..++++...+... ...+.++..+.++..+..
T Consensus 7 ~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (249)
T PRK12825 7 RVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEALGRRAQAVQA 63 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCceEEEEC
Confidence 3678899999999999999989999887766654322 123344556666666553
No 267
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=54.18 E-value=1.2e+02 Score=26.47 Aligned_cols=51 Identities=24% Similarity=0.199 Sum_probs=34.7
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH-HcCCEEEEeC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLL-AFGAELVLTD 123 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~-~~Ga~v~~~~ 123 (325)
+..+|+..+|.-|.++|......|.+++++-. + ..+.+.+. ..|.++..+.
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r-~--~~~~~~l~~~~~~~~~~~~ 57 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAEGARVAVLDK-S--AAGLQELEAAHGDAVVGVE 57 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeC-C--HHHHHHHHhhcCCceEEEE
Confidence 47788888899999999999999998776532 2 23333333 3455555544
No 268
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=54.17 E-value=73 Score=34.43 Aligned_cols=31 Identities=16% Similarity=0.103 Sum_probs=27.8
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEec
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMP 101 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p 101 (325)
+.|+.-++|..|.+.|...++.|++++||=.
T Consensus 431 ~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~ 461 (1006)
T PRK12775 431 GKVAICGSGPAGLAAAADLVKYGVDVTVYEA 461 (1006)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEec
Confidence 4688889999999999999999999999954
No 269
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=54.07 E-value=92 Score=26.78 Aligned_cols=54 Identities=17% Similarity=0.268 Sum_probs=36.4
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHH-HHHHHHcCCEEEEeCC
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLER-RMVLLAFGAELVLTDP 124 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~-~~~~~~~Ga~v~~~~~ 124 (325)
+.+|+..+|--|.+++......|.+++++........+ ...++..+.++..+..
T Consensus 3 ~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 57 (255)
T TIGR01963 3 TALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVA 57 (255)
T ss_pred EEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEC
Confidence 57888889999999999988889987776554222212 2234455667766543
No 270
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=54.01 E-value=1.6e+02 Score=26.24 Aligned_cols=54 Identities=24% Similarity=0.371 Sum_probs=34.5
Q ss_pred HHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCC
Q 020528 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGA 117 (325)
Q Consensus 61 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga 117 (325)
.+...++++...+|...+|..|.+++..|+.+|.+.+++.+ ...+...++.+|+
T Consensus 135 ~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~---~~~~~~~~~~~g~ 188 (324)
T cd08244 135 LDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAG---GPAKTALVRALGA 188 (324)
T ss_pred HHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCC
Confidence 34455666667777776788898888889988887544422 2334444455555
No 271
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=53.84 E-value=97 Score=26.87 Aligned_cols=54 Identities=11% Similarity=0.135 Sum_probs=36.4
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTD 123 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~ 123 (325)
++.+|+..+|.-|.+++......|.+++++.+.... ......++..|.++..+.
T Consensus 12 k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~ 66 (255)
T PRK06113 12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACR 66 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 477888989999999999988899987766543211 112234455676665544
No 272
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=53.77 E-value=34 Score=28.04 Aligned_cols=46 Identities=22% Similarity=0.263 Sum_probs=35.7
Q ss_pred EEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q 020528 73 LIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 123 (325)
Q Consensus 73 vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 123 (325)
+|...+|+.|..++......|.+++++++...+... ..+.+++..+
T Consensus 2 ~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-----~~~~~~~~~d 47 (183)
T PF13460_consen 2 LVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-----SPGVEIIQGD 47 (183)
T ss_dssp EEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-----CTTEEEEESC
T ss_pred EEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-----ccccccceee
Confidence 577889999999999999999999999987543333 5556665554
No 273
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=53.75 E-value=1.6e+02 Score=26.06 Aligned_cols=54 Identities=31% Similarity=0.354 Sum_probs=36.1
Q ss_pred HHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCC
Q 020528 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGA 117 (325)
Q Consensus 61 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga 117 (325)
.+.+.+.++.+.+|...+|..|.+++..++.+|.+.+++.+ +..+...++.+|+
T Consensus 132 ~~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~ 185 (325)
T TIGR02824 132 FQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAG---SDEKCAACEALGA 185 (325)
T ss_pred HHhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCC
Confidence 34566677777777777788999988888888887655433 2334444555654
No 274
>PRK06720 hypothetical protein; Provisional
Probab=53.64 E-value=1.3e+02 Score=24.84 Aligned_cols=30 Identities=20% Similarity=0.339 Sum_probs=21.8
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEE
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIIT 99 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~ 99 (325)
+..+|+..++--|.++|......|.++++.
T Consensus 17 k~~lVTGa~~GIG~aia~~l~~~G~~V~l~ 46 (169)
T PRK06720 17 KVAIVTGGGIGIGRNTALLLAKQGAKVIVT 46 (169)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEE
Confidence 366777777778888887777777665544
No 275
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=53.54 E-value=94 Score=28.99 Aligned_cols=54 Identities=24% Similarity=0.321 Sum_probs=38.0
Q ss_pred HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020528 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 118 (325)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 118 (325)
+...+.+|.+.+| ...|..|.+++..++.+|...++++. .+..|...++.+|+.
T Consensus 170 ~~~~~~~g~~vlI-~g~g~vg~~~~~~a~~~G~~~vi~~~--~~~~~~~~~~~~g~~ 223 (375)
T cd08282 170 ELAGVQPGDTVAV-FGAGPVGLMAAYSAILRGASRVYVVD--HVPERLDLAESIGAI 223 (375)
T ss_pred HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHcCCe
Confidence 4445566766666 45688999999999999975444433 356778888888874
No 276
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=53.50 E-value=89 Score=28.53 Aligned_cols=49 Identities=31% Similarity=0.348 Sum_probs=34.0
Q ss_pred CCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020528 67 RPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 118 (325)
Q Consensus 67 ~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 118 (325)
.+|...+|.+ +|..|.+++..|+.+|.+.++++ ..+..|..+.+.+|++
T Consensus 162 ~~g~~vlV~g-~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~ 210 (341)
T cd05281 162 VSGKSVLITG-CGPIGLMAIAVAKAAGASLVIAS--DPNPYRLELAKKMGAD 210 (341)
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCcc
Confidence 4565667754 58889999889999998544444 3355666777777764
No 277
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=53.50 E-value=1.7e+02 Score=26.22 Aligned_cols=43 Identities=16% Similarity=0.192 Sum_probs=28.8
Q ss_pred hHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhC----CCcEEEEEe
Q 020528 164 TGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHN----PEIKLYGVE 209 (325)
Q Consensus 164 ~~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~----~~~~vigV~ 209 (325)
...+++++- +++|.|+|. +.....|+.+++++.+ .++.|+|.+
T Consensus 192 ~~~~~l~~~-~~~~ai~~~--~d~~A~g~~~al~~~g~~vp~di~vig~D 238 (305)
T cd06324 192 QAENLLKRY-PDVRLIWAA--NDQMAFGALRAAKEAGRKPGRDVLFGGVN 238 (305)
T ss_pred HHHHHHHHC-CCccEEEEC--CchHHHHHHHHHHHcCCCcCCCEEEEecC
Confidence 444555542 468988753 5666678999999876 246777775
No 278
>PLN02527 aspartate carbamoyltransferase
Probab=53.40 E-value=1.4e+02 Score=27.29 Aligned_cols=45 Identities=22% Similarity=0.255 Sum_probs=34.0
Q ss_pred ChhHHHHHHHHHHc-CCeEEEEecCC--CCHHHHHHHHHcCCEEEEeC
Q 020528 79 GNTGIGLAFMAAAK-GYRLIITMPAS--MSLERRMVLLAFGAELVLTD 123 (325)
Q Consensus 79 GN~g~alA~~a~~~-g~~~~i~~p~~--~~~~~~~~~~~~Ga~v~~~~ 123 (325)
+|...|++..++++ |+.++++.|+. .+......++..|.++..++
T Consensus 163 ~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~ 210 (306)
T PLN02527 163 GRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESS 210 (306)
T ss_pred ChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEc
Confidence 35889999887776 99999999987 34555566666788877665
No 279
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=53.33 E-value=46 Score=33.89 Aligned_cols=77 Identities=21% Similarity=0.194 Sum_probs=49.8
Q ss_pred CChhhHHHHHHH-HHHHHhCCC------CCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCC---------C----
Q 020528 46 SSVKDRIGYSMI-ADAEEKGLI------RPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM---------S---- 105 (325)
Q Consensus 46 GS~K~R~a~~~~-~~a~~~g~~------~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~---------~---- 105 (325)
++.-++.+.-.+ ..+.+.|.. .+..+.|+.-++|-.|.+.|+..++.|.+++||-.... +
T Consensus 279 ~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l 358 (639)
T PRK12809 279 GAVSIGNLERYITDTALAMGWRPDVSKVVPRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKL 358 (639)
T ss_pred CCcChhHHHHHHHHHHHHhCCCCCCCcccCCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccC
Confidence 355555554333 344444421 12235678889999999999999999999888854321 1
Q ss_pred -----HHHHHHHHHcCCEEEEe
Q 020528 106 -----LERRMVLLAFGAELVLT 122 (325)
Q Consensus 106 -----~~~~~~~~~~Ga~v~~~ 122 (325)
....+.++.+|.+++.-
T Consensus 359 ~~~~~~~~~~~~~~~Gv~~~~~ 380 (639)
T PRK12809 359 DKTVLSQRREIFTAMGIDFHLN 380 (639)
T ss_pred CHHHHHHHHHHHHHCCeEEEcC
Confidence 13566778888887654
No 280
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=53.32 E-value=95 Score=26.71 Aligned_cols=64 Identities=19% Similarity=0.206 Sum_probs=39.0
Q ss_pred CCChhHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHh
Q 020528 77 TSGNTGIGLAFMAAAKGYRLIITMPASMS--LERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDK 141 (325)
Q Consensus 77 ssGN~g~alA~~a~~~g~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~ 141 (325)
+++.-|.++|....+.|.++++.-..... .......+.+|.+++.++-. +.++..+...+..+.
T Consensus 4 ~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~~-~~~~v~~~~~~~~~~ 69 (241)
T PF13561_consen 4 SSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAEVIQCDLS-DEESVEALFDEAVER 69 (241)
T ss_dssp STSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSEEEESCTT-SHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCceEeecCc-chHHHHHHHHHHHhh
Confidence 45668899999988999888777554322 12334556688887777653 333333333444444
No 281
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=53.28 E-value=54 Score=30.60 Aligned_cols=28 Identities=25% Similarity=0.243 Sum_probs=15.2
Q ss_pred hHHhchHHHHHhhhCCCCCEEEEecCCchhH
Q 020528 159 IHYETTGPEIWKGTGGKIDALVSGIGTGGTV 189 (325)
Q Consensus 159 ~g~~t~~~Ei~~ql~~~~D~iv~pvG~Gg~~ 189 (325)
.+.-+-+.|+++. ...| .++++|+|+..
T Consensus 113 v~s~~~alefak~--~~fD-s~vaiGGGSa~ 140 (465)
T KOG3857|consen 113 VGSVTAALEFAKK--KNFD-SFVAIGGGSAH 140 (465)
T ss_pred hhhHHHHHHHHHh--cccc-eEEEEcCcchh
Confidence 3445556666553 3456 45566666544
No 282
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=53.25 E-value=1.6e+02 Score=25.90 Aligned_cols=52 Identities=33% Similarity=0.418 Sum_probs=35.5
Q ss_pred hCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCC
Q 020528 63 KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGA 117 (325)
Q Consensus 63 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga 117 (325)
.+.+.+|...+|...+|..|.+++..++.+|.+.+++. .+..+.+.++.+|+
T Consensus 131 ~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~---~~~~~~~~~~~~g~ 182 (320)
T cd05286 131 TYPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTV---SSEEKAELARAAGA 182 (320)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEc---CCHHHHHHHHHCCC
Confidence 35556666767766678899999888998988755543 24455555666665
No 283
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=53.19 E-value=1.7e+02 Score=26.25 Aligned_cols=53 Identities=26% Similarity=0.381 Sum_probs=35.4
Q ss_pred hCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH-cCCE
Q 020528 63 KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLA-FGAE 118 (325)
Q Consensus 63 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~-~Ga~ 118 (325)
.+.+.++...+|...+|..|.+++..++..|.+.+++.+ +..+...++. +|++
T Consensus 140 ~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~~g~~ 193 (329)
T cd05288 140 IGKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAG---SDEKCRWLVEELGFD 193 (329)
T ss_pred ccCCCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhhcCCc
Confidence 345566666667666788999999999999987555432 3445555555 6763
No 284
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=53.07 E-value=1.8e+02 Score=26.40 Aligned_cols=52 Identities=29% Similarity=0.454 Sum_probs=34.4
Q ss_pred HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCC
Q 020528 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGA 117 (325)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga 117 (325)
+...+.++...+|. .+|..|.+++..|+.+|+++++..+ +..+...++.+|+
T Consensus 153 ~~~~l~~g~~vLI~-g~g~vG~~a~~lA~~~g~~v~~~~~---s~~~~~~~~~~g~ 204 (337)
T cd08261 153 RRAGVTAGDTVLVV-GAGPIGLGVIQVAKARGARVIVVDI---DDERLEFARELGA 204 (337)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEECC---CHHHHHHHHHhCC
Confidence 44556667666666 4677888888888888888655532 3555556666664
No 285
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=53.02 E-value=1.5e+02 Score=25.47 Aligned_cols=52 Identities=35% Similarity=0.546 Sum_probs=33.9
Q ss_pred hCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020528 63 KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 118 (325)
Q Consensus 63 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 118 (325)
...+.++.+.+|...++ .|.+++..++..|.+.+++.+ +..+.+.++.+|++
T Consensus 129 ~~~~~~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~ 180 (271)
T cd05188 129 AGVLKPGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDR---SDEKLELAKELGAD 180 (271)
T ss_pred ccCCCCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcC---CHHHHHHHHHhCCc
Confidence 34445666767766666 999999999988877655533 23455555666653
No 286
>PRK10537 voltage-gated potassium channel; Provisional
Probab=53.02 E-value=2.1e+02 Score=27.26 Aligned_cols=95 Identities=14% Similarity=0.111 Sum_probs=56.4
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCC
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQ 150 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 150 (325)
.+++.++.|+.|..++..-+..|.+++++.++ +.+.....|..++.
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d-----~~~~~~~~g~~vI~----------------------------- 286 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQRGQAVTVIVPL-----GLEHRLPDDADLIP----------------------------- 286 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHCCCCEEEEECc-----hhhhhccCCCcEEE-----------------------------
Confidence 46777888999998887777778888777643 11111111221111
Q ss_pred CCCCcchHhHHhchHHHHHhhhC-CCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEe
Q 020528 151 FENPANPKIHYETTGPEIWKGTG-GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVE 209 (325)
Q Consensus 151 ~~n~~~~~~g~~t~~~Ei~~ql~-~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~ 209 (325)
.|+.. .|.+++.+ .+.+.+++....-..-.-++...|+.+|+.++++..
T Consensus 287 -GD~td---------~e~L~~AgI~~A~aVI~~t~dD~~Nl~ivL~ar~l~p~~kIIa~v 336 (393)
T PRK10537 287 -GDSSD---------SAVLKKAGAARARAILALRDNDADNAFVVLAAKEMSSDVKTVAAV 336 (393)
T ss_pred -eCCCC---------HHHHHhcCcccCCEEEEcCCChHHHHHHHHHHHHhCCCCcEEEEE
Confidence 12221 24444432 346777777766554444667788888988888764
No 287
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=52.98 E-value=1.5e+02 Score=27.39 Aligned_cols=53 Identities=25% Similarity=0.296 Sum_probs=36.8
Q ss_pred hCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020528 63 KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 118 (325)
Q Consensus 63 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 118 (325)
...+.++.+.+|. ++|..|.+++..|+.+|.+.++.+.. +..|...++.+|++
T Consensus 181 ~~~~~~g~~vlI~-g~g~vG~~~~~la~~~G~~~v~~~~~--~~~k~~~~~~~g~~ 233 (365)
T cd08278 181 VLKPRPGSSIAVF-GAGAVGLAAVMAAKIAGCTTIIAVDI--VDSRLELAKELGAT 233 (365)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCc
Confidence 4455667676676 56888999888999999865444433 45666777777764
No 288
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=52.77 E-value=94 Score=28.98 Aligned_cols=53 Identities=19% Similarity=0.303 Sum_probs=34.2
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCC--CCHHHHHHH----HHcCCEEEEeC
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS--MSLERRMVL----LAFGAELVLTD 123 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~--~~~~~~~~~----~~~Ga~v~~~~ 123 (325)
+..++.-..|...|++..++++|++++++-|+. .+...+..+ +..|.++...+
T Consensus 156 kv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 214 (338)
T PRK02255 156 KVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTD 214 (338)
T ss_pred EEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEc
Confidence 433334336888888888888888888888876 333333333 24577776664
No 289
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=52.70 E-value=89 Score=28.16 Aligned_cols=38 Identities=34% Similarity=0.450 Sum_probs=29.4
Q ss_pred HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEE
Q 020528 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIIT 99 (325)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~ 99 (325)
+...++++...+|...+|..|.+++..|+.+|.+++++
T Consensus 156 ~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~ 193 (325)
T cd08264 156 KTAGLGPGETVVVFGASGNTGIFAVQLAKMMGAEVIAV 193 (325)
T ss_pred HhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEE
Confidence 33556677677777767999999999999999886554
No 290
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=52.49 E-value=1.1e+02 Score=27.27 Aligned_cols=51 Identities=27% Similarity=0.408 Sum_probs=36.9
Q ss_pred hCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCC
Q 020528 63 KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGA 117 (325)
Q Consensus 63 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga 117 (325)
.+.+.++...+|...+|..|.+++..|+..|.+.+++.+ + .+...++.+|+
T Consensus 138 ~~~~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~---~-~~~~~~~~~g~ 188 (319)
T cd08267 138 AGKVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCS---T-RNAELVRSLGA 188 (319)
T ss_pred hcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeC---H-HHHHHHHHcCC
Confidence 344566667777776799999999999999998665543 1 55566677776
No 291
>PRK05693 short chain dehydrogenase; Provisional
Probab=52.48 E-value=1.6e+02 Score=25.78 Aligned_cols=66 Identities=30% Similarity=0.229 Sum_probs=43.3
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHH
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRD 140 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~ 140 (325)
..+|+..+|--|.+++......|.+++++... ..+...+...+.+.+.++-. +.++..+...+..+
T Consensus 3 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~~~~~ 68 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKAAGYEVWATARK---AEDVEALAAAGFTAVQLDVN-DGAALARLAEELEA 68 (274)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHCCCeEEEeeCC-CHHHHHHHHHHHHH
Confidence 56888888999999999988999987766432 34455556667776666642 33333444444433
No 292
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=52.42 E-value=1.6e+02 Score=25.54 Aligned_cols=69 Identities=13% Similarity=0.110 Sum_probs=44.0
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHh
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDK 141 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~ 141 (325)
++.+|+.++|--|.++|......|.++++..... ..+.+.++..+...+.++-. +.++..+...+..+.
T Consensus 8 k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~--~~~~~~l~~~~~~~~~~Dl~-~~~~~~~~~~~~~~~ 76 (255)
T PRK06463 8 KVALITGGTRGIGRAIAEAFLREGAKVAVLYNSA--ENEAKELREKGVFTIKCDVG-NRDQVKKSKEVVEKE 76 (255)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCc--HHHHHHHHhCCCeEEEecCC-CHHHHHHHHHHHHHH
Confidence 4678888889999999999888998877654432 33445555556666666643 334444444444333
No 293
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=52.34 E-value=1.2e+02 Score=25.86 Aligned_cols=54 Identities=17% Similarity=0.271 Sum_probs=37.0
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCC
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS--LERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~ 124 (325)
..+|+..+|.-|.+++......|..++++...+.. ......++..|.++..+..
T Consensus 3 ~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (247)
T PRK09730 3 IALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQA 58 (247)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhCCCeEEEEEc
Confidence 46888888999999999988899987765544322 2223345666776665543
No 294
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=52.32 E-value=1.4e+02 Score=25.45 Aligned_cols=54 Identities=17% Similarity=0.246 Sum_probs=36.0
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCH--HHHHHHHHcCCEEEEeCC
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL--ERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~--~~~~~~~~~Ga~v~~~~~ 124 (325)
+.+|+.++|.-|.+++......|.++++++..+... .....+...+.++..+..
T Consensus 7 ~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 62 (247)
T PRK05565 7 VAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKA 62 (247)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEC
Confidence 678888889999999998888899877763443221 122334445666666543
No 295
>PRK08265 short chain dehydrogenase; Provisional
Probab=52.29 E-value=1.4e+02 Score=25.95 Aligned_cols=52 Identities=15% Similarity=0.125 Sum_probs=34.4
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 123 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 123 (325)
++.+|+.++|--|.++|......|.+++++-. +. ....+..+..+.++..+.
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r-~~-~~~~~~~~~~~~~~~~~~ 58 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGARVAIVDI-DA-DNGAAVAASLGERARFIA 58 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeC-CH-HHHHHHHHHhCCeeEEEE
Confidence 46788888898999999998899998766633 21 112223344466665554
No 296
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=52.21 E-value=1.3e+02 Score=25.55 Aligned_cols=52 Identities=21% Similarity=0.202 Sum_probs=36.0
Q ss_pred EEecCCChhHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCC
Q 020528 73 LIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS--LERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 73 vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~ 124 (325)
+|+..+|.-|.++|....+.|.+++++.....+ ......++..+.++..+..
T Consensus 2 lItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 55 (239)
T TIGR01831 2 LVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQAQGGNARLLQF 55 (239)
T ss_pred EEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEc
Confidence 677888889999999999999997766544321 2233455566777766654
No 297
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=52.13 E-value=1.5e+02 Score=29.48 Aligned_cols=45 Identities=11% Similarity=-0.019 Sum_probs=37.7
Q ss_pred ChhHHHHHHHHHHcC-CeEEEEecCCC--CHHHHHHHHHcCCEEEEeC
Q 020528 79 GNTGIGLAFMAAAKG-YRLIITMPASM--SLERRMVLLAFGAELVLTD 123 (325)
Q Consensus 79 GN~g~alA~~a~~~g-~~~~i~~p~~~--~~~~~~~~~~~Ga~v~~~~ 123 (325)
+|.+.|++..++++| ++++++.|+.. +...+..++..|+.+..+.
T Consensus 186 ~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~ 233 (525)
T PRK13376 186 GRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFS 233 (525)
T ss_pred CcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEc
Confidence 799999999999998 99999999874 5555677777899888776
No 298
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=51.87 E-value=1.6e+02 Score=26.57 Aligned_cols=56 Identities=20% Similarity=0.194 Sum_probs=37.3
Q ss_pred HHhCCCCCCCeEEEecCCChhHHHHHHHHHH-cCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 020528 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAA-KGYRLIITMPASMSLERRMVLLAFGAELV 120 (325)
Q Consensus 61 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~-~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 120 (325)
.+...++++.+.+|.+ +|-.|.+++..++. .|.+.++.. .+..+.+.++.+|++.+
T Consensus 155 ~~~~~~~~g~~vlV~g-~g~vG~~~~~la~~~~g~~v~~~~---~~~~~~~~~~~~g~~~v 211 (338)
T PRK09422 155 IKVSGIKPGQWIAIYG-AGGLGNLALQYAKNVFNAKVIAVD---INDDKLALAKEVGADLT 211 (338)
T ss_pred HHhcCCCCCCEEEEEC-CcHHHHHHHHHHHHhCCCeEEEEe---CChHHHHHHHHcCCcEE
Confidence 3445567776777766 67888888888886 488755443 24456677777787543
No 299
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=51.85 E-value=1.6e+02 Score=25.68 Aligned_cols=72 Identities=11% Similarity=0.116 Sum_probs=42.3
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCH--HHHHHHH-HcCCEEEEeCCC-CChhHHHHHHHHHHHh
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL--ERRMVLL-AFGAELVLTDPA-RGMKGAVQKAEEIRDK 141 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~--~~~~~~~-~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 141 (325)
++.+|+.+++.-|.++|......|.+++++...+... ...+.++ ..|.++..+..+ .+.++..+...++.++
T Consensus 9 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (260)
T PRK08416 9 KTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDED 84 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 4778888888899999999889999877664433211 1122333 346666555432 2344444444444443
No 300
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=51.84 E-value=54 Score=30.55 Aligned_cols=93 Identities=15% Similarity=0.036 Sum_probs=44.1
Q ss_pred HHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeE-EeCCCCCCcchHhHHhchHHHHHhhhC-CCCCEEEEecCCch
Q 020528 110 MVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSY-VLQQFENPANPKIHYETTGPEIWKGTG-GKIDALVSGIGTGG 187 (325)
Q Consensus 110 ~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~n~~~~~~g~~t~~~Ei~~ql~-~~~D~iv~pvG~Gg 187 (325)
..++.+|-++.++.+........+...+..++.+-.+ +..-..||.. ....++.++.. .++| +|+++|+|+
T Consensus 16 ~~~~~~~~r~livt~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~p~~------~~v~~~~~~~~~~~~D-~IIavGGGS 88 (351)
T cd08170 16 EYLARLGKRALIIADEFVLDLVGAKIEESLAAAGIDARFEVFGGECTR------AEIERLAEIARDNGAD-VVIGIGGGK 88 (351)
T ss_pred HHHHHhCCeEEEEECHHHHHHHHHHHHHHHHhCCCeEEEEEeCCcCCH------HHHHHHHHHHhhcCCC-EEEEecCch
Confidence 4455556666655542223334444444444432111 1111123332 12334444432 3688 678999887
Q ss_pred hHHHHHHHHHhhCCCcEEEEEecC
Q 020528 188 TVTGAGKYLKEHNPEIKLYGVEPV 211 (325)
Q Consensus 188 ~~aGi~~~~k~~~~~~~vigV~~~ 211 (325)
.+= +++++... ...++|.|-..
T Consensus 89 ~iD-~aK~ia~~-~~~P~iaIPTT 110 (351)
T cd08170 89 TLD-TAKAVADY-LGAPVVIVPTI 110 (351)
T ss_pred hhH-HHHHHHHH-cCCCEEEeCCc
Confidence 763 45544433 23567776443
No 301
>PRK06138 short chain dehydrogenase; Provisional
Probab=51.80 E-value=1.2e+02 Score=25.91 Aligned_cols=54 Identities=11% Similarity=0.142 Sum_probs=35.1
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~ 124 (325)
++.+|+..+|--|.++|......|.+++++...... ......++ .+.++..+..
T Consensus 6 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~ 60 (252)
T PRK06138 6 RVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AGGRAFARQG 60 (252)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-cCCeEEEEEc
Confidence 367899999999999999888889886666543211 12222333 5666665543
No 302
>PLN02702 L-idonate 5-dehydrogenase
Probab=51.80 E-value=1.3e+02 Score=27.73 Aligned_cols=56 Identities=27% Similarity=0.329 Sum_probs=38.8
Q ss_pred HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 020528 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120 (325)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 120 (325)
+...+.++...+|. +.|..|.++...++.+|.+.++.+.. +..+...++.+|+...
T Consensus 175 ~~~~~~~g~~vlI~-g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~~ 230 (364)
T PLN02702 175 RRANIGPETNVLVM-GAGPIGLVTMLAARAFGAPRIVIVDV--DDERLSVAKQLGADEI 230 (364)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHhCCCEE
Confidence 44445666666666 56888888888899999876555543 4667777777887544
No 303
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=51.80 E-value=94 Score=27.06 Aligned_cols=32 Identities=16% Similarity=0.214 Sum_probs=25.0
Q ss_pred CeEEEecCC--ChhHHHHHHHHHHcCCeEEEEec
Q 020528 70 ESVLIEPTS--GNTGIGLAFMAAAKGYRLIITMP 101 (325)
Q Consensus 70 ~~~vv~~ss--GN~g~alA~~a~~~g~~~~i~~p 101 (325)
+..+|+.++ +.-|.++|....+.|.++++.-.
T Consensus 8 k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r 41 (252)
T PRK06079 8 KKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQ 41 (252)
T ss_pred CEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecC
Confidence 366777776 57999999999899998776643
No 304
>PRK12831 putative oxidoreductase; Provisional
Probab=51.79 E-value=59 Score=31.63 Aligned_cols=53 Identities=19% Similarity=0.097 Sum_probs=40.2
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCC---C--CHHHHHHHHHcCCEEEEeC
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS---M--SLERRMVLLAFGAELVLTD 123 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~---~--~~~~~~~~~~~Ga~v~~~~ 123 (325)
+.|+.-++||.|.-+|..+.++|.+++++..+. . ....++.++..|.+++...
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~~~a~~eGV~i~~~~ 339 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEVHHAKEEGVIFDLLT 339 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHHcCCEEEecc
Confidence 467788899999999999999999988887643 2 2344556677888776543
No 305
>PRK07832 short chain dehydrogenase; Provisional
Probab=51.72 E-value=1.7e+02 Score=25.70 Aligned_cols=30 Identities=23% Similarity=0.317 Sum_probs=24.0
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEe
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITM 100 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~ 100 (325)
+.+|+.++|.-|.+++......|.+++++.
T Consensus 2 ~vlItGas~giG~~la~~la~~G~~vv~~~ 31 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGAELFLTD 31 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 467888889999999998888898765543
No 306
>CHL00194 ycf39 Ycf39; Provisional
Probab=51.59 E-value=63 Score=29.39 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=27.9
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecC
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 102 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~ 102 (325)
+.+|+..+|.-|..++......|.+++++...
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcC
Confidence 56889999999999999988899998888764
No 307
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=51.58 E-value=76 Score=26.20 Aligned_cols=53 Identities=23% Similarity=0.295 Sum_probs=34.1
Q ss_pred CCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 020528 64 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120 (325)
Q Consensus 64 g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 120 (325)
+.+-.| +.++..+-|+-|.++|...+.+|.+++|. ..++.+..+....|=++.
T Consensus 18 ~~~l~G-k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~---e~DPi~alqA~~dGf~v~ 70 (162)
T PF00670_consen 18 NLMLAG-KRVVVIGYGKVGKGIARALRGLGARVTVT---EIDPIRALQAAMDGFEVM 70 (162)
T ss_dssp -S--TT-SEEEEE--SHHHHHHHHHHHHTT-EEEEE----SSHHHHHHHHHTT-EEE
T ss_pred ceeeCC-CEEEEeCCCcccHHHHHHHhhCCCEEEEE---ECChHHHHHhhhcCcEec
Confidence 333344 56788999999999999999999887776 345666666666777664
No 308
>PRK06841 short chain dehydrogenase; Provisional
Probab=51.57 E-value=1.3e+02 Score=26.03 Aligned_cols=32 Identities=22% Similarity=0.274 Sum_probs=26.3
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEec
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMP 101 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p 101 (325)
++.+|+..+|--|.++|......|.+++++.+
T Consensus 16 k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r 47 (255)
T PRK06841 16 KVAVVTGGASGIGHAIAELFAAKGARVALLDR 47 (255)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 36788888899999999998899998666544
No 309
>PLN02827 Alcohol dehydrogenase-like
Probab=51.56 E-value=1.2e+02 Score=28.40 Aligned_cols=55 Identities=25% Similarity=0.270 Sum_probs=38.5
Q ss_pred HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 020528 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119 (325)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 119 (325)
+.+.+.+|.+.+|.+ .|--|.+++..|+.+|.+.++.+.. +..|.+.++.+|++-
T Consensus 187 ~~~~~~~g~~VlV~G-~G~vG~~~iqlak~~G~~~vi~~~~--~~~~~~~a~~lGa~~ 241 (378)
T PLN02827 187 NVADVSKGSSVVIFG-LGTVGLSVAQGAKLRGASQIIGVDI--NPEKAEKAKTFGVTD 241 (378)
T ss_pred hhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEECC--CHHHHHHHHHcCCcE
Confidence 345567776766664 6888988888899999865554432 456777778888854
No 310
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=51.18 E-value=84 Score=29.62 Aligned_cols=95 Identities=17% Similarity=0.150 Sum_probs=44.3
Q ss_pred CeEEEEecCCCCHHHHHHHHHcCC-EEEEeCCCCChh-HHHHHHHHHHHhCC-CeEEeCCC-CCCcchHhHHhchHHHHH
Q 020528 94 YRLIITMPASMSLERRMVLLAFGA-ELVLTDPARGMK-GAVQKAEEIRDKTP-NSYVLQQF-ENPANPKIHYETTGPEIW 169 (325)
Q Consensus 94 ~~~~i~~p~~~~~~~~~~~~~~Ga-~v~~~~~~~~~~-~~~~~a~~~~~~~~-~~~~~~~~-~n~~~~~~g~~t~~~Ei~ 169 (325)
+|..|+.-.+.-..--..++.+|. ++.++.+..... ...+...+..++.+ .....+.. .||.. . ...++.
T Consensus 5 ~p~~i~~G~g~l~~l~~~l~~~g~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~--~----~v~~~~ 78 (377)
T cd08176 5 LPPTNLFGAGAIKEIGDELKNLGFKKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTI--T----NVKDGL 78 (377)
T ss_pred CCCeEEECcCHHHHHHHHHHHhCCCeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCH--H----HHHHHH
Confidence 345555555544444456666774 555554322122 24455555555432 12222211 13321 1 123333
Q ss_pred hhhC-CCCCEEEEecCCchhHHHHHHHH
Q 020528 170 KGTG-GKIDALVSGIGTGGTVTGAGKYL 196 (325)
Q Consensus 170 ~ql~-~~~D~iv~pvG~Gg~~aGi~~~~ 196 (325)
+++. .++| +|+.+|+|..+= +++++
T Consensus 79 ~~~~~~~~D-~IIavGGGS~iD-~aK~i 104 (377)
T cd08176 79 AVFKKEGCD-FIISIGGGSPHD-CAKAI 104 (377)
T ss_pred HHHHhcCCC-EEEEeCCcHHHH-HHHHH
Confidence 3332 3688 677899887753 34433
No 311
>PRK07904 short chain dehydrogenase; Provisional
Probab=51.12 E-value=1.5e+02 Score=25.80 Aligned_cols=53 Identities=11% Similarity=0.135 Sum_probs=34.0
Q ss_pred CeEEEecCCChhHHHHHHHHHHc-CCeEEEEecCCCC--HHHHHHHHHcCC-EEEEe
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAK-GYRLIITMPASMS--LERRMVLLAFGA-ELVLT 122 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~-g~~~~i~~p~~~~--~~~~~~~~~~Ga-~v~~~ 122 (325)
+..+|+..+|--|.++|...... |.+++++.....+ ....+.++..|. +++.+
T Consensus 9 ~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~ 65 (253)
T PRK07904 9 QTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVI 65 (253)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEE
Confidence 46788888888999999887766 4887777544322 222344555553 45444
No 312
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=51.10 E-value=1.6e+02 Score=27.38 Aligned_cols=60 Identities=22% Similarity=0.233 Sum_probs=39.9
Q ss_pred HhCCCCCCCeEEEecCC--ChhHHHHHHHHHHcCCeEEEEecCCC--CHHHHHH----HHHcCCEEEEeC
Q 020528 62 EKGLIRPGESVLIEPTS--GNTGIGLAFMAAAKGYRLIITMPASM--SLERRMV----LLAFGAELVLTD 123 (325)
Q Consensus 62 ~~g~~~~g~~~vv~~ss--GN~g~alA~~a~~~g~~~~i~~p~~~--~~~~~~~----~~~~Ga~v~~~~ 123 (325)
+.|.++ | .+|+-.+. -|.+.|++..++++|++++++.|+.. +...+.. .+..|.++..++
T Consensus 149 ~~g~l~-g-~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 216 (331)
T PRK02102 149 HFGPLK-G-LKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITE 216 (331)
T ss_pred HhCCCC-C-CEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEc
Confidence 346543 3 33443344 37899999999999999999999873 3333332 345788887765
No 313
>PRK08264 short chain dehydrogenase; Validated
Probab=50.80 E-value=76 Score=27.09 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=26.4
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCC-eEEEEec
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGY-RLIITMP 101 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~-~~~i~~p 101 (325)
++.+|+..+|.-|.++|......|. +++++..
T Consensus 7 ~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r 39 (238)
T PRK08264 7 KVVLVTGANRGIGRAFVEQLLARGAAKVYAAAR 39 (238)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCcccEEEEec
Confidence 3678889999999999999999998 6655544
No 314
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=50.77 E-value=62 Score=32.01 Aligned_cols=51 Identities=18% Similarity=0.135 Sum_probs=40.3
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 124 (325)
.+++.-+.|..|.+.+..++.+|-.++++ +....++++.+.+|++.+.++.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~---d~~~~rle~a~~lGa~~v~v~~ 215 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAF---DTRPEVKEQVQSMGAEFLELDF 215 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEE---eCCHHHHHHHHHcCCeEEeccc
Confidence 35666778999999999999999875554 2345678899999999887763
No 315
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=50.76 E-value=1.1e+02 Score=26.15 Aligned_cols=54 Identities=26% Similarity=0.277 Sum_probs=37.2
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCC
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS--LERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~ 124 (325)
+.+|+.++|.-|.++|....+.|.++++....+.. ......++..+.+++.+..
T Consensus 4 ~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (248)
T PRK06947 4 VVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVAG 59 (248)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEe
Confidence 56888888999999999988889887665543321 1233455667777766653
No 316
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=50.53 E-value=1.3e+02 Score=27.02 Aligned_cols=50 Identities=22% Similarity=0.383 Sum_probs=35.5
Q ss_pred CCCCC-eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020528 66 IRPGE-SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 118 (325)
Q Consensus 66 ~~~g~-~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 118 (325)
+.++. +.+|...+|..|.+++..|+.+|.+.++.... ..+.+.++.+|++
T Consensus 142 ~~~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~---~~~~~~~~~~g~~ 192 (323)
T TIGR02823 142 LTPEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGK---AEEEDYLKELGAS 192 (323)
T ss_pred CCCCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHhcCCc
Confidence 56666 66776667999999999999999886555432 3444666777764
No 317
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=50.46 E-value=1.4e+02 Score=25.67 Aligned_cols=50 Identities=22% Similarity=0.228 Sum_probs=33.6
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHH-HHcCCEEEEeC
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVL-LAFGAELVLTD 123 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~-~~~Ga~v~~~~ 123 (325)
+.+|+..+|..|.++|......|.+++++... ..+...+ ...+.++..+.
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~ 52 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGHKVIATGRR---QERLQELKDELGDNLYIAQ 52 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHHhccceEEEE
Confidence 45788889999999999999999987665432 2333332 23455555444
No 318
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=50.22 E-value=1.2e+02 Score=28.29 Aligned_cols=54 Identities=19% Similarity=0.279 Sum_probs=37.4
Q ss_pred HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020528 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 118 (325)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 118 (325)
+.+.+++|.+.+|. +.|.-|.+++..++.+|..-++++.. ...+++.++.+|++
T Consensus 184 ~~~~~~~g~~VlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~~--~~~~~~~a~~lGa~ 237 (373)
T cd08299 184 NTAKVTPGSTCAVF-GLGGVGLSAIMGCKAAGASRIIAVDI--NKDKFAKAKELGAT 237 (373)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHcCCc
Confidence 44556777666666 57889999999999999843344432 45667777778874
No 319
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=50.19 E-value=1e+02 Score=26.79 Aligned_cols=56 Identities=30% Similarity=0.341 Sum_probs=38.3
Q ss_pred HHHHhCCCCCCCeEEEec-CCC---hhHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCC
Q 020528 59 DAEEKGLIRPGESVLIEP-TSG---NTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGA 117 (325)
Q Consensus 59 ~a~~~g~~~~g~~~vv~~-ssG---N~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga 117 (325)
.|...|.-. +.+|++ |.| .+..|||.+|++-|=+.+.++|...+ ..-.+.|..+|.
T Consensus 34 SAlAAG~nA---kliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~ 94 (218)
T PF07279_consen 34 SALAAGWNA---KLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL 94 (218)
T ss_pred HHHhccccc---eEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc
Confidence 445556522 445544 444 36889999999999999999998654 455666666665
No 320
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=49.95 E-value=2.2e+02 Score=26.60 Aligned_cols=85 Identities=13% Similarity=0.127 Sum_probs=38.1
Q ss_pred EecCCCCHHHHHHHHHcCC-EEEEeCCCCChh-HHHHHHHHHHHhCCC-eEEeCCC-CCCcchHhHHhchHHHHHhhhC-
Q 020528 99 TMPASMSLERRMVLLAFGA-ELVLTDPARGMK-GAVQKAEEIRDKTPN-SYVLQQF-ENPANPKIHYETTGPEIWKGTG- 173 (325)
Q Consensus 99 ~~p~~~~~~~~~~~~~~Ga-~v~~~~~~~~~~-~~~~~a~~~~~~~~~-~~~~~~~-~n~~~~~~g~~t~~~Ei~~ql~- 173 (325)
+.-.+.-..-...++.+|. ++.++.+....+ ...+...+..++.+- ....+.. .||. . ....++.+++.
T Consensus 5 ~~G~g~l~~l~~~l~~~~~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~--~----~~v~~~~~~~~~ 78 (370)
T cd08551 5 IFGAGAIEKLGEEIKNLGGRKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPT--L----SNVDAAVAAYRE 78 (370)
T ss_pred EECcCHHHHHHHHHHHcCCCeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCC--H----HHHHHHHHHHHh
Confidence 3333333333445556663 555554322222 344444444444321 2212211 2332 1 22234444442
Q ss_pred CCCCEEEEecCCchhHH
Q 020528 174 GKIDALVSGIGTGGTVT 190 (325)
Q Consensus 174 ~~~D~iv~pvG~Gg~~a 190 (325)
.++| .|+.+|+|..+=
T Consensus 79 ~~~d-~IiaiGGGs~~D 94 (370)
T cd08551 79 EGCD-GVIAVGGGSVLD 94 (370)
T ss_pred cCCC-EEEEeCCchHHH
Confidence 3578 577898887763
No 321
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=49.90 E-value=1.1e+02 Score=28.37 Aligned_cols=84 Identities=13% Similarity=0.245 Sum_probs=51.5
Q ss_pred eEEEecCCChhHHHHHHHHH-HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChh-HHHHHHHHHHHhCCCeEEe
Q 020528 71 SVLIEPTSGNTGIGLAFMAA-AKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMK-GAVQKAEEIRDKTPNSYVL 148 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~-~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~ 148 (325)
.+++.+++|..|.-.|+.=- .-|=++.++.-..-...-.++.+++|++|..++.+-+-. ........+++..++.+++
T Consensus 69 ~tf~isgsGh~g~E~al~N~lePgd~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv 148 (385)
T KOG2862|consen 69 QTFVISGSGHSGWEAALVNLLEPGDNVLVVSTGTWGQRAADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFV 148 (385)
T ss_pred ceEEEecCCcchHHHHHHhhcCCCCeEEEEEechHHHHHHHHHHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEEE
Confidence 56777888866655544422 235555555555567777889999999999996432111 1233344555555677777
Q ss_pred CCCCCC
Q 020528 149 QQFENP 154 (325)
Q Consensus 149 ~~~~n~ 154 (325)
.+.+..
T Consensus 149 ~hgdsS 154 (385)
T KOG2862|consen 149 THGDSS 154 (385)
T ss_pred EecCcc
Confidence 665443
No 322
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=49.70 E-value=1.5e+02 Score=26.56 Aligned_cols=46 Identities=24% Similarity=0.294 Sum_probs=33.2
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 119 (325)
..+|...+|..|.+++..|+.+|.+++++.+ +..+...++.+|++-
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~ 194 (325)
T cd05280 149 PVLVTGATGGVGSIAVAILAKLGYTVVALTG---KEEQADYLKSLGASE 194 (325)
T ss_pred EEEEECCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhcCCcE
Confidence 5566666799999999999999998544433 355666777788743
No 323
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=49.57 E-value=1.5e+02 Score=27.00 Aligned_cols=55 Identities=25% Similarity=0.322 Sum_probs=35.9
Q ss_pred HHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020528 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 118 (325)
Q Consensus 61 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 118 (325)
.+...+.++.+.+|.+ +|..|.+++..|+.+|.+.++++.. +..+...++.+|++
T Consensus 155 ~~~~~~~~g~~vlI~g-~g~vG~~a~~lak~~G~~~v~~~~~--~~~~~~~~~~~g~~ 209 (343)
T cd05285 155 CRRAGVRPGDTVLVFG-AGPIGLLTAAVAKAFGATKVVVTDI--DPSRLEFAKELGAT 209 (343)
T ss_pred HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHcCCc
Confidence 4566677777777754 5778888888899899874333322 24455555666664
No 324
>PRK05717 oxidoreductase; Validated
Probab=49.35 E-value=1.6e+02 Score=25.46 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=34.9
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 124 (325)
++.+|+..+|.-|.++|......|.+++++-.. ........+..+.+++.+..
T Consensus 11 k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~ 63 (255)
T PRK05717 11 RVALVTGAARGIGLGIAAWLIAEGWQVVLADLD--RERGSKVAKALGENAWFIAM 63 (255)
T ss_pred CEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCC--HHHHHHHHHHcCCceEEEEc
Confidence 478899999999999999988899887665322 11122233445655555543
No 325
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=49.20 E-value=1.4e+02 Score=28.31 Aligned_cols=100 Identities=19% Similarity=0.179 Sum_probs=45.7
Q ss_pred eEEEEecCCCCHHHHHHHHHcCC-EE-EEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHHHHhhh
Q 020528 95 RLIITMPASMSLERRMVLLAFGA-EL-VLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGT 172 (325)
Q Consensus 95 ~~~i~~p~~~~~~~~~~~~~~Ga-~v-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~ql 172 (325)
+..|+.-.+.-......+..+|. ++ +++++.-.-.+..+...+..++.+-.+.+-.. -..+|......-+.|.+++.
T Consensus 7 p~~i~fG~g~l~~l~~~~~~~g~~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~-v~p~P~~~~v~~~~~~~~~~ 85 (377)
T COG1454 7 PTEILFGRGSLKELGEEVKRLGAKRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDE-VEPEPTIETVEAGAEVAREF 85 (377)
T ss_pred CceEEecCChHHHHHHHHHhcCCCceEEEECCccccchhHHHHHHHHHhcCCeEEEecC-CCCCCCHHHHHHHHHHHHhc
Confidence 33444444444555555555552 22 23332111112334444444444212222111 11123334455666777764
Q ss_pred CCCCCEEEEecCCchhHHHHHHHHHhh
Q 020528 173 GGKIDALVSGIGTGGTVTGAGKYLKEH 199 (325)
Q Consensus 173 ~~~~D~iv~pvG~Gg~~aGi~~~~k~~ 199 (325)
++| .|+++|+|+.+ -++++...+
T Consensus 86 --~~D-~iIalGGGS~~-D~AK~i~~~ 108 (377)
T COG1454 86 --GPD-TIIALGGGSVI-DAAKAIALL 108 (377)
T ss_pred --CCC-EEEEeCCccHH-HHHHHHHHH
Confidence 689 56788888776 344444433
No 326
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=49.15 E-value=1.2e+02 Score=26.89 Aligned_cols=17 Identities=29% Similarity=0.479 Sum_probs=9.3
Q ss_pred CCeEEEecCCChhHHHH
Q 020528 69 GESVLIEPTSGNTGIGL 85 (325)
Q Consensus 69 g~~~vv~~ssGN~g~al 85 (325)
|++.+|..-.-|..+|.
T Consensus 6 GK~~lI~Gvan~rSIAw 22 (259)
T COG0623 6 GKRILIMGVANNRSIAW 22 (259)
T ss_pred CceEEEEEecccccHHH
Confidence 34666666555555443
No 327
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=48.89 E-value=40 Score=24.55 Aligned_cols=50 Identities=16% Similarity=0.208 Sum_probs=30.8
Q ss_pred HHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccc
Q 020528 167 EIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVL 216 (325)
Q Consensus 167 Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~ 216 (325)
+.+++.-...|.+|+-...|..+--++..++....++-|++|+..+.-.+
T Consensus 3 ~~~~~~~~~~d~~I~i~A~GivvR~iap~l~dK~~DPaVvvvde~g~~vI 52 (84)
T PF11760_consen 3 DLLRELFRRYDAIIFIMAAGIVVRAIAPLLKDKDTDPAVVVVDEDGRFVI 52 (84)
T ss_dssp --HHHHCCC-SEEEEES-HHHHHHHHHHH---TTT--EEEEE-TT--EEE
T ss_pred hHHHHHHcCCCeEEEEeCcHHHHHHhChhhcccCCCCCEEEEeCCCCEEE
Confidence 34455545689888888889999999999999889999999999888543
No 328
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=48.89 E-value=1.6e+02 Score=26.01 Aligned_cols=71 Identities=21% Similarity=0.216 Sum_probs=39.1
Q ss_pred CeEEEecCCC--hhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHH-HHcCCEE-EEeCCCCChhHHHHHHHHHHHh
Q 020528 70 ESVLIEPTSG--NTGIGLAFMAAAKGYRLIITMPASMSLERRMVL-LAFGAEL-VLTDPARGMKGAVQKAEEIRDK 141 (325)
Q Consensus 70 ~~~vv~~ssG--N~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~-~~~Ga~v-~~~~~~~~~~~~~~~a~~~~~~ 141 (325)
+..||+..++ .-|.++|....+.|.+++++-.......+++.+ +..|..+ +.++- .+.++..+...+..++
T Consensus 8 k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv-~d~~~v~~~~~~~~~~ 82 (271)
T PRK06505 8 KRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDV-EDIASVDAVFEALEKK 82 (271)
T ss_pred CEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCC-CCHHHHHHHHHHHHHH
Confidence 3677877775 688899999889999887764322122233333 3346432 23343 2334444444444443
No 329
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=48.81 E-value=1.9e+02 Score=25.50 Aligned_cols=51 Identities=31% Similarity=0.352 Sum_probs=34.5
Q ss_pred CCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCC
Q 020528 64 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGA 117 (325)
Q Consensus 64 g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga 117 (325)
+.+.+|...+|...+|..|.+++..++..|.+.++..+ +..+.+.++.+|+
T Consensus 140 ~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~ 190 (325)
T cd08253 140 AGAKAGETVLVHGGSGAVGHAAVQLARWAGARVIATAS---SAEGAELVRQAGA 190 (325)
T ss_pred hCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCC
Confidence 55566667777777788999999889888887555433 2344555555554
No 330
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=48.70 E-value=1.7e+02 Score=26.62 Aligned_cols=46 Identities=20% Similarity=0.159 Sum_probs=28.7
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 119 (325)
+++..-+.|..|.+++..++.+|.+++++-+ ...+..+.+.+|++.
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r---~~~~~~~~~~~G~~~ 198 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVGAR---KSAHLARITEMGLSP 198 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEEC---CHHHHHHHHHcCCee
Confidence 3455556677888888888888876555522 234455566677654
No 331
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=48.68 E-value=1.9e+02 Score=25.34 Aligned_cols=55 Identities=25% Similarity=0.343 Sum_probs=37.8
Q ss_pred HHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020528 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 118 (325)
Q Consensus 61 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 118 (325)
.+.+.+.+|...++...+|..|.+++..++.+|++.+++.+ +..+...++.+|++
T Consensus 113 l~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~ 167 (303)
T cd08251 113 FARAGLAKGEHILIQTATGGTGLMAVQLARLKGAEIYATAS---SDDKLEYLKQLGVP 167 (303)
T ss_pred HHhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHcCCC
Confidence 34566677767677677788899998899999987555533 24455556667763
No 332
>PRK07775 short chain dehydrogenase; Provisional
Probab=48.66 E-value=1.5e+02 Score=26.09 Aligned_cols=55 Identities=22% Similarity=0.149 Sum_probs=37.1
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~ 124 (325)
+..+|+..+|.-|.+++......|.+++++...... ..-...++..|.++..+..
T Consensus 11 ~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 66 (274)
T PRK07775 11 RPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFPL 66 (274)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEC
Confidence 367888888999999999988889987666543211 1122345566778776554
No 333
>PRK05826 pyruvate kinase; Provisional
Probab=48.65 E-value=2.7e+02 Score=27.24 Aligned_cols=124 Identities=13% Similarity=0.118 Sum_probs=71.1
Q ss_pred HHHHHHHcCCeEEEE-----------ecCCCCHHHHHHHHHcCCEEEEeCCCC----ChhHHHHHHHHHHHhCCCeEEeC
Q 020528 85 LAFMAAAKGYRLIIT-----------MPASMSLERRMVLLAFGAELVLTDPAR----GMKGAVQKAEEIRDKTPNSYVLQ 149 (325)
Q Consensus 85 lA~~a~~~g~~~~i~-----------~p~~~~~~~~~~~~~~Ga~v~~~~~~~----~~~~~~~~a~~~~~~~~~~~~~~ 149 (325)
+...|+..|.++++- .|..+...-+...-..|++-+...+.. ...++.+...++.++.+..++..
T Consensus 264 Ii~~c~~~gKpvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~vmLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~ 343 (465)
T PRK05826 264 IIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGKYPVEAVEAMARICKGAEKEFSIN 343 (465)
T ss_pred HHHHHHHcCCCEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEEEeccccccCcCHHHHHHHHHHHHHHHHhccchh
Confidence 445688899998874 233344444556667899988876431 23455555555443322211110
Q ss_pred ----CCCCC-cchHhHHhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCC
Q 020528 150 ----QFENP-ANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVES 213 (325)
Q Consensus 150 ----~~~n~-~~~~~g~~t~~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~ 213 (325)
..... ..........+.++.+++. ..+.||+.+-+|.+.--+ ....|...|+++.+...
T Consensus 344 ~~~~~~~~~~~~~~~~ia~aa~~~a~~l~-~a~~Ivv~T~sG~ta~~i----sk~RP~~pI~~~t~~~~ 407 (465)
T PRK05826 344 LSKHRLDRQFDRIDEAIAMSAMYAANHLK-GVKAIVALTESGRTARLI----SRFRPGAPIFAVTRDEK 407 (465)
T ss_pred hhhhhccccccchHHHHHHHHHHHHHhcC-CCCEEEEECCCcHHHHHH----HhhCCCCCEEEEcCCHH
Confidence 00000 0112234445566777762 267899999999876544 44579999999975433
No 334
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=48.60 E-value=96 Score=28.52 Aligned_cols=37 Identities=19% Similarity=0.159 Sum_probs=27.4
Q ss_pred CCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC
Q 020528 69 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS 105 (325)
Q Consensus 69 g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~ 105 (325)
|.+..+++-.+|.+.|++..++++|+.++++.|+..+
T Consensus 153 g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~ 189 (311)
T PRK14804 153 QKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAK 189 (311)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCcc
Confidence 3344444555788888888888889988888888744
No 335
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=48.59 E-value=1.6e+02 Score=26.67 Aligned_cols=55 Identities=31% Similarity=0.464 Sum_probs=38.8
Q ss_pred HHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020528 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 118 (325)
Q Consensus 61 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 118 (325)
.+...++++.+.+|.+ +|..|.++...++.+|.+.++.+.. +..+...++.+|++
T Consensus 154 ~~~~~~~~g~~VlI~g-~g~vg~~~~~la~~~G~~~v~~~~~--~~~~~~~~~~~g~~ 208 (341)
T cd08262 154 VRRARLTPGEVALVIG-CGPIGLAVIAALKARGVGPIVASDF--SPERRALALAMGAD 208 (341)
T ss_pred HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHcCCc
Confidence 3455667776777764 5888888888899999876555433 46777777778874
No 336
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=48.57 E-value=1.7e+02 Score=25.55 Aligned_cols=72 Identities=15% Similarity=0.158 Sum_probs=39.3
Q ss_pred CeEEEecCC--ChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH-Hc-CCEEEEeCCC-CChhHHHHHHHHHHHh
Q 020528 70 ESVLIEPTS--GNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLL-AF-GAELVLTDPA-RGMKGAVQKAEEIRDK 141 (325)
Q Consensus 70 ~~~vv~~ss--GN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~-~~-Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 141 (325)
+..+|+.++ +.-|.++|..-.+.|.++++.-.......+++.+. .. |.+++.+..+ .+.++..+...++.++
T Consensus 8 k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 84 (257)
T PRK08594 8 KTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEE 84 (257)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHh
Confidence 366777765 67899999998889998776543222233333332 22 4455444321 2333444444444443
No 337
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=48.55 E-value=52 Score=29.81 Aligned_cols=72 Identities=24% Similarity=0.266 Sum_probs=48.7
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHH-HHHHHcCC-E-EEEeCCC-CChhHHHHHHHHHHHhC
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERR-MVLLAFGA-E-LVLTDPA-RGMKGAVQKAEEIRDKT 142 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~-~~~~~~Ga-~-v~~~~~~-~~~~~~~~~a~~~~~~~ 142 (325)
..+||..|+--|.++|+--.+.|.+.++++.......++ +.++..++ + ++...-+ .+.+++.+.....-+..
T Consensus 14 vVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~f 89 (282)
T KOG1205|consen 14 VVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHF 89 (282)
T ss_pred EEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhc
Confidence 678888887799999999999999999999887666666 77766665 3 4444322 23444444443333333
No 338
>PRK04148 hypothetical protein; Provisional
Probab=48.37 E-value=81 Score=25.15 Aligned_cols=50 Identities=14% Similarity=0.165 Sum_probs=38.2
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 124 (325)
..+++-+.| +|.++|..-+..|.+++.+ +.++..++.++..+.+++.-+-
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaI---Di~~~aV~~a~~~~~~~v~dDl 67 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVI---DINEKAVEKAKKLGLNAFVDDL 67 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEE---ECCHHHHHHHHHhCCeEEECcC
Confidence 457777788 8888888888899887766 5566678888888888877663
No 339
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=48.20 E-value=1.6e+02 Score=29.01 Aligned_cols=68 Identities=21% Similarity=0.165 Sum_probs=34.0
Q ss_pred hhhHHHHHHHHHHHHhCCCCCCCeEEEecC-CChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 020528 48 VKDRIGYSMIADAEEKGLIRPGESVLIEPT-SGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 48 ~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s-sGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 124 (325)
.++..+...+..|.+.+. +.||++| ||.++..++.+ +...+.+++.+.. ..-.++.-.||..-+.++.
T Consensus 359 ~~~aia~sAv~~A~~l~a-----kaIVv~T~SG~TA~~lS~~--RP~~pIiavT~~~--~~~r~l~l~~GV~p~~~~~ 427 (480)
T cd00288 359 TTEAVAMSAVRAAFELGA-----KAIVVLTTSGRTARLVSKY--RPNAPIIAVTRNE--QTARQLHLYRGVYPVLFEE 427 (480)
T ss_pred hHHHHHHHHHHHHHhcCC-----CEEEEECCCcHHHHHHHhh--CCCCCEEEEcCCH--HHhhheeeccCcEEEEecc
Confidence 445445555555555554 3344444 37666655443 4456777766642 1122222345666655543
No 340
>PRK07985 oxidoreductase; Provisional
Probab=48.13 E-value=1.5e+02 Score=26.66 Aligned_cols=54 Identities=17% Similarity=0.201 Sum_probs=36.0
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCC-C--HHHHHHHHHcCCEEEEeC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM-S--LERRMVLLAFGAELVLTD 123 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~-~--~~~~~~~~~~Ga~v~~~~ 123 (325)
++.+|+..+|.-|.++|......|.++++...... . ......++..|.+++.+.
T Consensus 50 k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLP 106 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEE
Confidence 37889999999999999999999999876533211 1 112223445677765554
No 341
>PRK07774 short chain dehydrogenase; Provisional
Probab=48.06 E-value=1.6e+02 Score=25.26 Aligned_cols=54 Identities=13% Similarity=0.179 Sum_probs=35.2
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCH-HHHHHHHHcCCEEEEeC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL-ERRMVLLAFGAELVLTD 123 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~-~~~~~~~~~Ga~v~~~~ 123 (325)
++.+|+.++|--|.+++......|.+++++....... .....++..+.+++.+.
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~ 61 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQ 61 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 3678899999999999999988999877765432111 12233444455554443
No 342
>PRK07326 short chain dehydrogenase; Provisional
Probab=48.05 E-value=1.7e+02 Score=24.77 Aligned_cols=32 Identities=31% Similarity=0.411 Sum_probs=26.6
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEec
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMP 101 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p 101 (325)
+..+|+.++|..|.+++......|.+++++..
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r 38 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITAR 38 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeC
Confidence 36788888999999999998888999766643
No 343
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=48.03 E-value=1.6e+02 Score=26.07 Aligned_cols=33 Identities=30% Similarity=0.414 Sum_probs=21.6
Q ss_pred eEEEecCCChhH---HHHHHHHHHcCCeEEEEecCC
Q 020528 71 SVLIEPTSGNTG---IGLAFMAAAKGYRLIITMPAS 103 (325)
Q Consensus 71 ~~vv~~ssGN~g---~alA~~a~~~g~~~~i~~p~~ 103 (325)
+.+|.++.||.| .++|...+..|+++.+++++.
T Consensus 62 ~V~VlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~~ 97 (246)
T PLN03050 62 RVLLVCGPGNNGGDGLVAARHLAHFGYEVTVCYPKQ 97 (246)
T ss_pred eEEEEECCCCCchhHHHHHHHHHHCCCeEEEEEcCC
Confidence 555666666554 455555666799999998543
No 344
>PRK06483 dihydromonapterin reductase; Provisional
Probab=48.01 E-value=1.7e+02 Score=24.82 Aligned_cols=65 Identities=22% Similarity=0.282 Sum_probs=42.7
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHH
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEI 138 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~ 138 (325)
+.+|+..+|--|.++|......|.+++++-... ....+.++..|+..+.++-. +.++..+...+.
T Consensus 4 ~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~D~~-~~~~~~~~~~~~ 68 (236)
T PRK06483 4 PILITGAGQRIGLALAWHLLAQGQPVIVSYRTH--YPAIDGLRQAGAQCIQADFS-TNAGIMAFIDEL 68 (236)
T ss_pred eEEEECCCChHHHHHHHHHHHCCCeEEEEeCCc--hhHHHHHHHcCCEEEEcCCC-CHHHHHHHHHHH
Confidence 678888889999999999888999887764432 22345556678777666642 333333333333
No 345
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=48.00 E-value=1e+02 Score=28.66 Aligned_cols=93 Identities=16% Similarity=0.204 Sum_probs=42.6
Q ss_pred HHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCC-CCCcchHhHHhchHHHHHhhhC-CCCCEEEEecCCch
Q 020528 110 MVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQF-ENPANPKIHYETTGPEIWKGTG-GKIDALVSGIGTGG 187 (325)
Q Consensus 110 ~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~n~~~~~~g~~t~~~Ei~~ql~-~~~D~iv~pvG~Gg 187 (325)
+.++.+|.++.++.+...++...+...+..++.+-.+....| .+|. .. ...++.+++. .++| +|+++|+|.
T Consensus 16 ~~~~~~g~~~liv~~~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~p~--~~----~v~~~~~~~~~~~~d-~IIavGGGs 88 (349)
T cd08550 16 AILSTFGSKVAVVGGKTVLKKSRPRFEAALAKSIIVVDVIVFGGECS--TE----EVVKALCGAEEQEAD-VIIGVGGGK 88 (349)
T ss_pred HHHHHcCCeEEEEEChHHHHHHHHHHHHHHHhcCCeeEEEEcCCCCC--HH----HHHHHHHHHHhcCCC-EEEEecCcH
Confidence 445556666655543223334444444444443111111112 2332 11 2233433332 3578 677888777
Q ss_pred hHHHHHHHHHhhCCCcEEEEEecC
Q 020528 188 TVTGAGKYLKEHNPEIKLYGVEPV 211 (325)
Q Consensus 188 ~~aGi~~~~k~~~~~~~vigV~~~ 211 (325)
.+ =+++++.... ..++|.|-..
T Consensus 89 ~~-D~aK~ia~~~-~~p~i~VPTt 110 (349)
T cd08550 89 TL-DTAKAVADRL-DKPIVIVPTI 110 (349)
T ss_pred HH-HHHHHHHHHc-CCCEEEeCCc
Confidence 65 3455554332 3466776543
No 346
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=47.61 E-value=1.1e+02 Score=28.85 Aligned_cols=15 Identities=27% Similarity=0.521 Sum_probs=11.4
Q ss_pred CCCCEEEEecCCchhH
Q 020528 174 GKIDALVSGIGTGGTV 189 (325)
Q Consensus 174 ~~~D~iv~pvG~Gg~~ 189 (325)
.++| +|+.+|+|..+
T Consensus 85 ~~~D-~IiaiGGGSvi 99 (379)
T TIGR02638 85 SGAD-YLIAIGGGSPI 99 (379)
T ss_pred cCCC-EEEEeCChHHH
Confidence 3578 57789988876
No 347
>PRK09291 short chain dehydrogenase; Provisional
Probab=47.61 E-value=75 Score=27.47 Aligned_cols=53 Identities=21% Similarity=0.234 Sum_probs=35.3
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHH-HHHHHHcCCEEEEeC
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLER-RMVLLAFGAELVLTD 123 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~-~~~~~~~Ga~v~~~~ 123 (325)
+.+|+..+|.-|.+++......|.+++++........+ .......|.++..+.
T Consensus 4 ~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 57 (257)
T PRK09291 4 TILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEK 57 (257)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEE
Confidence 67899999999999999999999988877654221111 222344555554443
No 348
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=47.50 E-value=2e+02 Score=26.63 Aligned_cols=54 Identities=19% Similarity=0.288 Sum_probs=38.7
Q ss_pred HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020528 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 118 (325)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 118 (325)
+...+.+|.+.+|. +.|..|.+++..|+.+|.+.++.+.. +..+...++.+|++
T Consensus 177 ~~~~~~~g~~vlI~-g~g~vG~~a~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~ 230 (365)
T cd05279 177 NTAKVTPGSTCAVF-GLGGVGLSVIMGCKAAGASRIIAVDI--NKDKFEKAKQLGAT 230 (365)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHhCCC
Confidence 34556677677776 57889999999999999875555432 56667777778873
No 349
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=47.41 E-value=1.7e+02 Score=27.71 Aligned_cols=55 Identities=24% Similarity=0.282 Sum_probs=44.8
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA 125 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (325)
+..+..+||..+..+|+-+-..|=--.|++|.-+-......+...||+.+++|-+
T Consensus 50 k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATan~i~~~Ga~PVFvDid 104 (374)
T COG0399 50 KYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATANAVLLVGAKPVFVDID 104 (374)
T ss_pred CeEEEecChHHHHHHHHHhcCCCCCCEEEecCCchHHHHHHHHHcCCeEEEEecC
Confidence 5567788888888887775446666788999988999999999999999999864
No 350
>PRK14031 glutamate dehydrogenase; Provisional
Probab=47.38 E-value=87 Score=30.41 Aligned_cols=52 Identities=15% Similarity=0.065 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHH-hCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecC
Q 020528 50 DRIGYSMIADAEE-KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 102 (325)
Q Consensus 50 ~R~a~~~~~~a~~-~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~ 102 (325)
-||..+.+..+.+ .|. ....++|+..+.||-|..+|......|.+++++.+.
T Consensus 208 g~Gv~~~~~~~~~~~g~-~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~ 260 (444)
T PRK14031 208 GYGNIYFLMEMLKTKGT-DLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDS 260 (444)
T ss_pred HHHHHHHHHHHHHhcCC-CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 3566677766544 443 444467888999999999999999999999888773
No 351
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=47.34 E-value=87 Score=28.68 Aligned_cols=49 Identities=22% Similarity=0.216 Sum_probs=29.6
Q ss_pred ecCCChhHHHHHHHHHHcCCeEEEEecCCC-C-HHHHH----HHHHcCCEEEEeC
Q 020528 75 EPTSGNTGIGLAFMAAAKGYRLIITMPASM-S-LERRM----VLLAFGAELVLTD 123 (325)
Q Consensus 75 ~~ssGN~g~alA~~a~~~g~~~~i~~p~~~-~-~~~~~----~~~~~Ga~v~~~~ 123 (325)
++-.-|.+.|++.+++++|++++++.|+.. + ...+. ..+..|+++..++
T Consensus 153 vGD~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~ 207 (302)
T PRK14805 153 VGDGNNVTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTS 207 (302)
T ss_pred EcCCCccHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEc
Confidence 333356667888888888888888887762 2 22221 2345677766654
No 352
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=47.33 E-value=1.2e+02 Score=27.80 Aligned_cols=48 Identities=29% Similarity=0.356 Sum_probs=35.5
Q ss_pred CCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020528 67 RPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 118 (325)
Q Consensus 67 ~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 118 (325)
.++.+.+|...+|..|.+++..++.+|.+.+... + ..+.+.++.+|++
T Consensus 153 ~~~~~vlI~ga~g~vg~~~~~~a~~~G~~v~~~~--~--~~~~~~~~~~g~~ 200 (339)
T cd08249 153 SKGKPVLIWGGSSSVGTLAIQLAKLAGYKVITTA--S--PKNFDLVKSLGAD 200 (339)
T ss_pred CCCCEEEEEcChhHHHHHHHHHHHHcCCeEEEEE--C--cccHHHHHhcCCC
Confidence 4566777777778999999999999999866553 2 2566666778874
No 353
>PRK09072 short chain dehydrogenase; Provisional
Probab=47.25 E-value=1.3e+02 Score=26.18 Aligned_cols=32 Identities=38% Similarity=0.451 Sum_probs=26.7
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEec
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMP 101 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p 101 (325)
+..+|+.++|--|.+++......|.+++++..
T Consensus 6 ~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r 37 (263)
T PRK09072 6 KRVLLTGASGGIGQALAEALAAAGARLLLVGR 37 (263)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEEC
Confidence 46788888899999999998889998776654
No 354
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=47.23 E-value=1.3e+02 Score=27.28 Aligned_cols=54 Identities=28% Similarity=0.281 Sum_probs=35.2
Q ss_pred HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020528 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 118 (325)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 118 (325)
....+.++.+.+|. ++|..|.++...|+.+|...++.+ ..+..+...++.+|++
T Consensus 161 ~~~~~~~~~~VlI~-g~g~vg~~~iqlak~~g~~~v~~~--~~~~~~~~~~~~~g~~ 214 (347)
T cd05278 161 ELAGIKPGSTVAVI-GAGPVGLCAVAGARLLGAARIIAV--DSNPERLDLAKEAGAT 214 (347)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEE--eCCHHHHHHHHHhCCc
Confidence 34556677677775 457788888888999997434444 3345666666777653
No 355
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=47.11 E-value=1.4e+02 Score=27.83 Aligned_cols=22 Identities=32% Similarity=0.373 Sum_probs=14.1
Q ss_pred HHHhhhC-CCCCEEEEecCCchhH
Q 020528 167 EIWKGTG-GKIDALVSGIGTGGTV 189 (325)
Q Consensus 167 Ei~~ql~-~~~D~iv~pvG~Gg~~ 189 (325)
++.+++. .++| +|+.+|+|..+
T Consensus 74 ~~~~~~~~~~~D-~IIavGGGSvi 96 (357)
T cd08181 74 EAVEIAKKFNAD-FVIGIGGGSPL 96 (357)
T ss_pred HHHHHHHhcCCC-EEEEeCCchHH
Confidence 4444432 3578 67799988876
No 356
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=46.95 E-value=1.9e+02 Score=24.96 Aligned_cols=150 Identities=17% Similarity=0.164 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCC---------------C-----HHHHHHH
Q 020528 53 GYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM---------------S-----LERRMVL 112 (325)
Q Consensus 53 a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~---------------~-----~~~~~~~ 112 (325)
+...+..+.++++ ..|+...+.....+++..+...+++.+.+..... + ..-.+.+
T Consensus 55 ~~~~~~~l~~~~v-----~~iig~~~~~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (298)
T cd06268 55 AAAAARELVDDGV-----DAVIGPLSSGVALAAAPVAEEAGVPLISPGATSPALTGKGNPYVFRTAPSDAQQAAALADYL 129 (298)
T ss_pred HHHHHHHHHhCCc-----eEEEcCCcchhHHhhHHHHHhCCCcEEccCCCCcccccCCCceEEEcccCcHHHHHHHHHHH
Confidence 3344555666565 5566555555555677788889999876532210 0 1123344
Q ss_pred HHcC--CEEEEeCCCCChh-HHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHHHHhhhCCCCCEEEEecCCchhH
Q 020528 113 LAFG--AELVLTDPARGMK-GAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTV 189 (325)
Q Consensus 113 ~~~G--a~v~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~ql~~~~D~iv~pvG~Gg~~ 189 (325)
...| .+|..+.....+. +..+..++..++.+.........+.. .........++.+ ..+|.|++. +.+...
T Consensus 130 ~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~--~~~~~~~~~~l~~---~~~~~vi~~-~~~~~~ 203 (298)
T cd06268 130 AEKGKVKKVAIIYDDYAYGRGLAAAFREALKKLGGEVVAEETYPPG--ATDFSPLIAKLKA---AGPDAVFLA-GYGGDA 203 (298)
T ss_pred HHhcCCCEEEEEEcCCchhHHHHHHHHHHHHHcCCEEEEEeccCCC--CccHHHHHHHHHh---cCCCEEEEc-cccchH
Confidence 5454 5777665433332 23333344444442111111111111 0112222223322 358876665 555777
Q ss_pred HHHHHHHHhhCCCcEEEEEecCCC
Q 020528 190 TGAGKYLKEHNPEIKLYGVEPVES 213 (325)
Q Consensus 190 aGi~~~~k~~~~~~~vigV~~~~~ 213 (325)
.++.+.+++.+-++++++......
T Consensus 204 ~~~~~~~~~~g~~~~~~~~~~~~~ 227 (298)
T cd06268 204 ALFLKQAREAGLKVPIVGGDGAAA 227 (298)
T ss_pred HHHHHHHHHcCCCCcEEecCccCC
Confidence 888999988777788888765444
No 357
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=46.86 E-value=1.2e+02 Score=27.60 Aligned_cols=46 Identities=26% Similarity=0.297 Sum_probs=33.0
Q ss_pred CCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020528 69 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 118 (325)
Q Consensus 69 g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 118 (325)
|.+.+|...+|..|.+++..|+.+|+++++.... .+...++.+|++
T Consensus 163 g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~----~~~~~~~~~g~~ 208 (350)
T cd08248 163 GKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST----DAIPLVKSLGAD 208 (350)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc----chHHHHHHhCCc
Confidence 6576677667889999999999999986655432 255566667763
No 358
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=46.80 E-value=1.7e+02 Score=25.38 Aligned_cols=69 Identities=17% Similarity=0.234 Sum_probs=40.5
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHH-HHcCCEEEEeCCC-CChhHHHHHHHHHHHh
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVL-LAFGAELVLTDPA-RGMKGAVQKAEEIRDK 141 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~-~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 141 (325)
+..+|+..+|.-|.++|......|.+++++-.. ..+.+.+ ..++.++..+..+ .+.+.......+..++
T Consensus 7 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFLAEGARVAVLERS---AEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDA 77 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHh
Confidence 467888888999999999999999987665332 2333333 2345444444322 2333444444444343
No 359
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=46.65 E-value=1.3e+02 Score=27.34 Aligned_cols=57 Identities=23% Similarity=0.258 Sum_probs=37.4
Q ss_pred CCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCC-CHHHHHHHHHcCCEEE
Q 020528 64 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM-SLERRMVLLAFGAELV 120 (325)
Q Consensus 64 g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~-~~~~~~~~~~~Ga~v~ 120 (325)
+.+.++.+.+|...+|..|.+++..|+.+|.++++...... -..+...++.+|++-+
T Consensus 142 ~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~~~ 199 (341)
T cd08290 142 VKLQPGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERLKALGADHV 199 (341)
T ss_pred cccCCCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCCcchhHHHHHHhcCCCEE
Confidence 44566656666656688999999999999988766655321 1144555566777543
No 360
>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=46.64 E-value=1.4e+02 Score=23.42 Aligned_cols=53 Identities=28% Similarity=0.332 Sum_probs=31.9
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCC-CCHHH----HHHHHHcCCEEEEeC
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS-MSLER----RMVLLAFGAELVLTD 123 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~-~~~~~----~~~~~~~Ga~v~~~~ 123 (325)
+.+|+..+|..|.+++......|...++++.++ .+... .+.++..|.++..+.
T Consensus 2 ~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (180)
T smart00822 2 TYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVA 59 (180)
T ss_pred EEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEE
Confidence 457788888899999988888887544444332 22111 234445566655443
No 361
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=46.56 E-value=1.9e+02 Score=24.78 Aligned_cols=33 Identities=24% Similarity=0.361 Sum_probs=27.2
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 102 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~ 102 (325)
++.+|+.++|.-|.++|......|.++++....
T Consensus 6 k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~ 38 (253)
T PRK08642 6 QTVLVTGGSRGLGAAIARAFAREGARVVVNYHQ 38 (253)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCC
Confidence 367889999999999999988899987765543
No 362
>PRK08251 short chain dehydrogenase; Provisional
Probab=46.35 E-value=1.6e+02 Score=25.23 Aligned_cols=31 Identities=35% Similarity=0.413 Sum_probs=25.5
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEec
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMP 101 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p 101 (325)
+.+|+.++|.-|.++|..-.+.|.++++...
T Consensus 4 ~vlItGas~giG~~la~~l~~~g~~v~~~~r 34 (248)
T PRK08251 4 KILITGASSGLGAGMAREFAAKGRDLALCAR 34 (248)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCEEEEEeC
Confidence 6788899999999999998888987666544
No 363
>PRK05854 short chain dehydrogenase; Provisional
Probab=46.27 E-value=1.6e+02 Score=26.62 Aligned_cols=73 Identities=19% Similarity=0.251 Sum_probs=41.5
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHc--CCEEEEeCCC-CChhHHHHHHHHHHHhC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAF--GAELVLTDPA-RGMKGAVQKAEEIRDKT 142 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~--Ga~v~~~~~~-~~~~~~~~~a~~~~~~~ 142 (325)
++.||+.+++--|.++|..-.+.|.++++....... ......++.. +.++..+..+ .+.++..+.+.++.+..
T Consensus 15 k~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~ 91 (313)
T PRK05854 15 KRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEG 91 (313)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 367888888888899988888899887766443211 1112233322 3455444321 24555555555554443
No 364
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=46.13 E-value=1.7e+02 Score=26.41 Aligned_cols=47 Identities=28% Similarity=0.319 Sum_probs=31.0
Q ss_pred CCeEEEecCCChhHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHcCCE
Q 020528 69 GESVLIEPTSGNTGIGLAFMAAAK-GYRLIITMPASMSLERRMVLLAFGAE 118 (325)
Q Consensus 69 g~~~vv~~ssGN~g~alA~~a~~~-g~~~~i~~p~~~~~~~~~~~~~~Ga~ 118 (325)
|.+.+|...+|..|.+++..|+.+ |.+++++.+ +..+...++.+|++
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~---~~~~~~~l~~~g~~ 196 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATAS---RPESQEWVLELGAH 196 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcC---cHHHHHHHHHcCCC
Confidence 556666666788888888888877 877655533 23455555666763
No 365
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=46.12 E-value=2.3e+02 Score=25.66 Aligned_cols=53 Identities=32% Similarity=0.407 Sum_probs=34.1
Q ss_pred HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCC
Q 020528 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGA 117 (325)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga 117 (325)
+...+.+|...+|.+ +|-.|.+++..|+..|++.++++.. +..+...++.+|+
T Consensus 159 ~~~~~~~g~~VlV~g-~g~vg~~~~~la~~~g~~~v~~~~~--s~~~~~~~~~~g~ 211 (343)
T cd08235 159 RKAGIKPGDTVLVIG-AGPIGLLHAMLAKASGARKVIVSDL--NEFRLEFAKKLGA 211 (343)
T ss_pred HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHhCC
Confidence 344567776777774 6778888888899999884333322 3445555555665
No 366
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=46.05 E-value=43 Score=27.89 Aligned_cols=40 Identities=25% Similarity=0.395 Sum_probs=27.8
Q ss_pred chHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEE
Q 020528 163 TTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGV 208 (325)
Q Consensus 163 t~~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV 208 (325)
..+.++.++ +-.||.|+.=.|=|-++ ++|+.+|++++++-
T Consensus 55 ~a~~~L~~~-Gf~PDvI~~H~GWGe~L-----flkdv~P~a~li~Y 94 (171)
T PF12000_consen 55 RAARQLRAQ-GFVPDVIIAHPGWGETL-----FLKDVFPDAPLIGY 94 (171)
T ss_pred HHHHHHHHc-CCCCCEEEEcCCcchhh-----hHHHhCCCCcEEEE
Confidence 344445444 56799766666655544 79999999999885
No 367
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=45.96 E-value=1.4e+02 Score=28.55 Aligned_cols=52 Identities=25% Similarity=0.330 Sum_probs=35.9
Q ss_pred CCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 020528 64 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119 (325)
Q Consensus 64 g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 119 (325)
+....| ++|+..+.|+-|..+|..++.+|.+++++ ..+ +.+.......|+++
T Consensus 190 ~~~l~G-k~VvViG~G~IG~~vA~~ak~~Ga~ViV~-d~d--p~r~~~A~~~G~~v 241 (406)
T TIGR00936 190 NLLIAG-KTVVVAGYGWCGKGIAMRARGMGARVIVT-EVD--PIRALEAAMDGFRV 241 (406)
T ss_pred CCCCCc-CEEEEECCCHHHHHHHHHHhhCcCEEEEE-eCC--hhhHHHHHhcCCEe
Confidence 333344 56888999999999999999999986554 322 23444555668755
No 368
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=45.94 E-value=85 Score=30.55 Aligned_cols=76 Identities=21% Similarity=0.090 Sum_probs=49.2
Q ss_pred CChhhHHHHHHHH-HHHHhCC---CC---CCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCC--------------
Q 020528 46 SSVKDRIGYSMIA-DAEEKGL---IR---PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM-------------- 104 (325)
Q Consensus 46 GS~K~R~a~~~~~-~a~~~g~---~~---~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~-------------- 104 (325)
++...|.....+. .+.+.+. .. +..+.|+.-++|..|.+.|..+++.|.++++|-....
T Consensus 112 ~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~ 191 (471)
T PRK12810 112 GPVTIKNIERYIIDKAFEEGWVKPDPPVKRTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKL 191 (471)
T ss_pred CCccHHHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccC
Confidence 4566666654443 3333332 00 1124678888999999999999999999998854321
Q ss_pred C----HHHHHHHHHcCCEEEE
Q 020528 105 S----LERRMVLLAFGAELVL 121 (325)
Q Consensus 105 ~----~~~~~~~~~~Ga~v~~ 121 (325)
+ ....+.++.+|.+++.
T Consensus 192 ~~~~~~~~~~~~~~~gv~~~~ 212 (471)
T PRK12810 192 EKEVIDRRIELMEAEGIEFRT 212 (471)
T ss_pred CHHHHHHHHHHHHhCCcEEEe
Confidence 1 2345677888988764
No 369
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=45.94 E-value=2e+02 Score=26.78 Aligned_cols=45 Identities=22% Similarity=0.248 Sum_probs=32.5
Q ss_pred ChhHHHHHHHHHHcCCeEEEEecCCC--CHHHHH----HHHHcCCEEEEeC
Q 020528 79 GNTGIGLAFMAAAKGYRLIITMPASM--SLERRM----VLLAFGAELVLTD 123 (325)
Q Consensus 79 GN~g~alA~~a~~~g~~~~i~~p~~~--~~~~~~----~~~~~Ga~v~~~~ 123 (325)
.|.+.|++.+++++|++++++.|+.. +...+. ..+..|.++..+.
T Consensus 166 ~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 216 (332)
T PRK04284 166 NNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITD 216 (332)
T ss_pred cchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 48889999999999999999999862 323332 2345788887665
No 370
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=45.91 E-value=1.2e+02 Score=28.68 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=11.5
Q ss_pred CCCEEEEecCCchhHH
Q 020528 175 KIDALVSGIGTGGTVT 190 (325)
Q Consensus 175 ~~D~iv~pvG~Gg~~a 190 (325)
++| +|+++|+|..+=
T Consensus 87 ~~D-~IIaiGGGS~iD 101 (382)
T PRK10624 87 GAD-YLIAIGGGSPQD 101 (382)
T ss_pred CCC-EEEEeCChHHHH
Confidence 688 678899888763
No 371
>PRK09242 tropinone reductase; Provisional
Probab=45.89 E-value=1.7e+02 Score=25.33 Aligned_cols=55 Identities=20% Similarity=0.160 Sum_probs=35.6
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCH-HHHHHHHHc--CCEEEEeCC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL-ERRMVLLAF--GAELVLTDP 124 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~-~~~~~~~~~--Ga~v~~~~~ 124 (325)
++.+|+..+|.-|.+++......|.+++++....... .....++.. +.++..+..
T Consensus 10 k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~ 67 (257)
T PRK09242 10 QTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAA 67 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEEC
Confidence 3678888889999999999888999876665432111 112233333 667766654
No 372
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=45.87 E-value=1.3e+02 Score=26.12 Aligned_cols=55 Identities=16% Similarity=0.171 Sum_probs=36.0
Q ss_pred CeEEEecCC--ChhHHHHHHHHHHcCCeEEEEec----CCC----CH----HHHHHHHHcCCEEEEeCC
Q 020528 70 ESVLIEPTS--GNTGIGLAFMAAAKGYRLIITMP----ASM----SL----ERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 70 ~~~vv~~ss--GN~g~alA~~a~~~g~~~~i~~p----~~~----~~----~~~~~~~~~Ga~v~~~~~ 124 (325)
++.+|+..+ +.-|.++|......|.++++... ... .. ...+.++..|.+++.+..
T Consensus 7 k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 75 (256)
T PRK12859 7 KVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMEL 75 (256)
T ss_pred cEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEc
Confidence 366777776 37899999999999998776521 110 11 223456677888876653
No 373
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=45.86 E-value=2.2e+02 Score=26.70 Aligned_cols=55 Identities=27% Similarity=0.313 Sum_probs=37.6
Q ss_pred HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHc-CCEE
Q 020528 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF-GAEL 119 (325)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~-Ga~v 119 (325)
+.+.+.++.+.+|. .+|-.|.+++..|+.+|...++.+.. ++.+++.++.+ |+++
T Consensus 178 ~~~~~~~g~~VlV~-g~G~vG~~~~~la~~~g~~~vi~~~~--~~~~~~~~~~~~~~~v 233 (386)
T cd08283 178 ELAEVKPGDTVAVW-GCGPVGLFAARSAKLLGAERVIAIDR--VPERLEMARSHLGAET 233 (386)
T ss_pred hhccCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcC--CHHHHHHHHHcCCcEE
Confidence 44556677666666 56888999999999999864444433 35677777777 5543
No 374
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=45.80 E-value=1.5e+02 Score=27.60 Aligned_cols=53 Identities=11% Similarity=0.021 Sum_probs=32.7
Q ss_pred EEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 020528 72 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 72 ~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 124 (325)
.|+..+++..+..++..+....=+-.|+++.=.-..-...++.+|++++.++.
T Consensus 93 ~I~it~Ga~~al~~~~~~~~~~g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~ 145 (374)
T PRK02610 93 NISVGNGSDELIRSLLIATCLGGEGSILVAEPTFSMYGILAQTLGIPVVRVGR 145 (374)
T ss_pred HEEEcCChHHHHHHHHHHHcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEecC
Confidence 46666666777765554443322223555544445556777999999999874
No 375
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=45.74 E-value=1.6e+02 Score=24.81 Aligned_cols=62 Identities=16% Similarity=0.153 Sum_probs=41.0
Q ss_pred HHHHHHHHhCCCCCCCeEEEecCCChhHH-HHHHHHHHcCCeEEEEecCCC------CHHHHHHHHHcCCEEE
Q 020528 55 SMIADAEEKGLIRPGESVLIEPTSGNTGI-GLAFMAAAKGYRLIITMPASM------SLERRMVLLAFGAELV 120 (325)
Q Consensus 55 ~~~~~a~~~g~~~~g~~~vv~~ssGN~g~-alA~~a~~~g~~~~i~~p~~~------~~~~~~~~~~~Ga~v~ 120 (325)
.+...+.+.|. .+.+++.-..|.+. +.+.-+..+|++++++.+... ...-++.|+..|++|+
T Consensus 128 ~L~~~L~~~~i----~~lii~G~~t~~CV~~T~~~a~~~g~~v~v~~Da~~~~~~~~~~~al~~~~~~G~~i~ 196 (196)
T cd01011 128 GLAEYLRERGI----DRVDVVGLATDYCVKATALDALKAGFEVRVLEDACRAVDPETIERAIEEMKEAGVVLV 196 (196)
T ss_pred hHHHHHHHCCC----CEEEEEEecccHHHHHHHHHHHHCCCEEEEeccccCCCCHHHHHHHHHHHHHccCEEC
Confidence 33444555665 35666777788884 667778889999998877642 2233667777788763
No 376
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=45.65 E-value=2.1e+02 Score=25.98 Aligned_cols=51 Identities=25% Similarity=0.416 Sum_probs=33.9
Q ss_pred hCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCC
Q 020528 63 KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGA 117 (325)
Q Consensus 63 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga 117 (325)
...+.++.+.+|.+ .|..|.++...|+.+|++++++.+ +..+.+.++.+|+
T Consensus 160 ~~~~~~~~~vlV~g-~g~vg~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~g~ 210 (345)
T cd08260 160 QARVKPGEWVAVHG-CGGVGLSAVMIASALGARVIAVDI---DDDKLELARELGA 210 (345)
T ss_pred ccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEeC---CHHHHHHHHHhCC
Confidence 34455666666666 688888888888888887655533 3445555566666
No 377
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=45.60 E-value=1.1e+02 Score=28.46 Aligned_cols=53 Identities=19% Similarity=0.307 Sum_probs=32.4
Q ss_pred CCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 020528 64 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119 (325)
Q Consensus 64 g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 119 (325)
+.+.+|.+.+| ...|.-|.+++..|+.+|.+.+++... +..+....+.+|++-
T Consensus 179 ~~~~~g~~VlV-~G~G~vG~~avq~Ak~~Ga~vi~~~~~--~~~~~~~~~~~Ga~~ 231 (360)
T PLN02586 179 GMTEPGKHLGV-AGLGGLGHVAVKIGKAFGLKVTVISSS--SNKEDEAINRLGADS 231 (360)
T ss_pred cccCCCCEEEE-ECCCHHHHHHHHHHHHCCCEEEEEeCC--cchhhhHHHhCCCcE
Confidence 44456656555 556888888888888888875443322 223334456677743
No 378
>PLN02253 xanthoxin dehydrogenase
Probab=45.60 E-value=1.3e+02 Score=26.58 Aligned_cols=32 Identities=13% Similarity=0.156 Sum_probs=26.9
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEec
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMP 101 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p 101 (325)
++.+|+..+|.-|.++|......|.+++++-.
T Consensus 19 k~~lItGas~gIG~~la~~l~~~G~~v~~~~~ 50 (280)
T PLN02253 19 KVALVTGGATGIGESIVRLFHKHGAKVCIVDL 50 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeC
Confidence 36789999999999999998889998776643
No 379
>PRK09414 glutamate dehydrogenase; Provisional
Probab=45.47 E-value=94 Score=30.19 Aligned_cols=53 Identities=11% Similarity=-0.070 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecC
Q 020528 50 DRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 102 (325)
Q Consensus 50 ~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~ 102 (325)
-||..+.+..+.+..-......+|+..+.||-|..+|.....+|.+++.+...
T Consensus 212 g~Gv~~~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs 264 (445)
T PRK09414 212 GYGLVYFAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDS 264 (445)
T ss_pred cHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcC
Confidence 45677777766554333333467888999999999999998888888777553
No 380
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=45.27 E-value=1.4e+02 Score=27.96 Aligned_cols=43 Identities=21% Similarity=0.255 Sum_probs=23.1
Q ss_pred HHHHhhhC-CCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecC
Q 020528 166 PEIWKGTG-GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPV 211 (325)
Q Consensus 166 ~Ei~~ql~-~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~ 211 (325)
.++.+++. .++| +|+++|+|+.+= ++++.... ...++|.|-..
T Consensus 74 ~~~~~~~~~~~~d-~IIavGGGsv~D-~aK~iA~~-~~~p~i~IPTt 117 (366)
T PRK09423 74 DRLVAIAEENGCD-VVIGIGGGKTLD-TAKAVADY-LGVPVVIVPTI 117 (366)
T ss_pred HHHHHHHHhcCCC-EEEEecChHHHH-HHHHHHHH-cCCCEEEeCCc
Confidence 34544442 3578 567888877653 34444322 23556666543
No 381
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=45.11 E-value=33 Score=31.10 Aligned_cols=32 Identities=19% Similarity=0.182 Sum_probs=26.4
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecC
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 102 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~ 102 (325)
+.|+..++|-.|.++|.+.++.|++++||=..
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~ 33 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERR 33 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhc
Confidence 35778899999999999999999999998654
No 382
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=45.08 E-value=36 Score=23.35 Aligned_cols=27 Identities=26% Similarity=0.501 Sum_probs=22.2
Q ss_pred CCChhHHHHHHHHHHcCCeEEEEecCC
Q 020528 77 TSGNTGIGLAFMAAAKGYRLIITMPAS 103 (325)
Q Consensus 77 ssGN~g~alA~~a~~~g~~~~i~~p~~ 103 (325)
.+|-.|.+.|+..++.|.+++|+=..+
T Consensus 3 GaG~sGl~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 3 GAGISGLAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp S-SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred eeCHHHHHHHHHHHHCCCcEEEEecCc
Confidence 578899999999999999999885544
No 383
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=44.88 E-value=1.8e+02 Score=24.19 Aligned_cols=31 Identities=23% Similarity=0.457 Sum_probs=22.3
Q ss_pred CCeEEEecCCChhHHHHHHHHHHcCCeEEEE
Q 020528 69 GESVLIEPTSGNTGIGLAFMAAAKGYRLIIT 99 (325)
Q Consensus 69 g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~ 99 (325)
+++.++..++|..|.+++......|.+++++
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~ 58 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLV 58 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence 3466666667999998888877777655554
No 384
>PRK05650 short chain dehydrogenase; Provisional
Probab=44.85 E-value=1.6e+02 Score=25.80 Aligned_cols=54 Identities=20% Similarity=0.218 Sum_probs=36.9
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCC
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~ 124 (325)
+.+|+.++|.-|.+++......|.+++++...... ......++..|.++..+..
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~ 56 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRC 56 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEc
Confidence 45788889999999999988899987766543221 2223345666777766543
No 385
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=44.73 E-value=1.3e+02 Score=26.15 Aligned_cols=30 Identities=30% Similarity=0.441 Sum_probs=25.2
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEe
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITM 100 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~ 100 (325)
+.+|+.++|.-|.++|......|.++++.-
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~ 31 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISS 31 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEe
Confidence 468889999999999999999999866653
No 386
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=44.73 E-value=1.9e+02 Score=24.81 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=27.0
Q ss_pred CCeEEEecCCChhHHHHHHHHHHcCCeEEEEec
Q 020528 69 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMP 101 (325)
Q Consensus 69 g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p 101 (325)
+++.+|+..+|.-|.+++......|..++++..
T Consensus 12 ~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r 44 (247)
T PRK08945 12 DRIILVTGAGDGIGREAALTYARHGATVILLGR 44 (247)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeC
Confidence 347889999999999999998888997766544
No 387
>PRK07576 short chain dehydrogenase; Provisional
Probab=44.13 E-value=1.8e+02 Score=25.43 Aligned_cols=54 Identities=15% Similarity=0.125 Sum_probs=35.5
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS-LERRMVLLAFGAELVLTD 123 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~ 123 (325)
++.+|+..+|.-|.+++......|.+++++-..... ......+...+.+++.+.
T Consensus 10 k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 64 (264)
T PRK07576 10 KNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVS 64 (264)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEE
Confidence 367888888999999999888899987666433211 112234555566665554
No 388
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=44.00 E-value=2.5e+02 Score=25.56 Aligned_cols=49 Identities=24% Similarity=0.229 Sum_probs=31.8
Q ss_pred CCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020528 67 RPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 118 (325)
Q Consensus 67 ~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 118 (325)
.++...+|- .+|..|.+++..|+.+|.+.++++. .+..+...++.+|++
T Consensus 174 ~~~~~vlI~-g~g~vg~~~~~~a~~~G~~~v~~~~--~~~~~~~~~~~~g~~ 222 (350)
T cd08240 174 VADEPVVII-GAGGLGLMALALLKALGPANIIVVD--IDEAKLEAAKAAGAD 222 (350)
T ss_pred CCCCEEEEE-CCcHHHHHHHHHHHHcCCCeEEEEe--CCHHHHHHHHHhCCc
Confidence 344454554 5688888888888888886444443 245566666667764
No 389
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=43.88 E-value=89 Score=30.44 Aligned_cols=51 Identities=22% Similarity=0.287 Sum_probs=38.3
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCC---------C---------HHHHHHHHHcCCEEEE
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM---------S---------LERRMVLLAFGAELVL 121 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~---------~---------~~~~~~~~~~Ga~v~~ 121 (325)
+.|+.-++|-.|.+.|..+++.|.+++++-.... + ....++++.+|.+++.
T Consensus 142 ~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~ 210 (467)
T TIGR01318 142 KRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHL 210 (467)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEEC
Confidence 5688889999999999999999999888743321 1 2345677888887754
No 390
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=43.85 E-value=2.2e+02 Score=25.19 Aligned_cols=48 Identities=29% Similarity=0.314 Sum_probs=36.6
Q ss_pred CCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020528 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 118 (325)
Q Consensus 68 ~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 118 (325)
+|...++...+|..|.+++..|+.+|.+.+...+ +..+...++.+|+.
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~ 179 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVG---SPARAEGLRELGAA 179 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCc
Confidence 3667777777799999999999999988554432 45677777778875
No 391
>PRK07062 short chain dehydrogenase; Provisional
Probab=43.73 E-value=2e+02 Score=25.01 Aligned_cols=33 Identities=12% Similarity=0.131 Sum_probs=27.2
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 102 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~ 102 (325)
+..+|+.++|.-|.++|......|.+++++...
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~ 41 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGASVAICGRD 41 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 467888988999999999999999987766543
No 392
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=43.71 E-value=2e+02 Score=24.79 Aligned_cols=32 Identities=22% Similarity=0.247 Sum_probs=26.8
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEec
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMP 101 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p 101 (325)
++.+|+.++|--|.++|......|.+++++-.
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r 38 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGARVVIADI 38 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEcC
Confidence 36789999999999999999889998776643
No 393
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=43.67 E-value=1.8e+02 Score=25.47 Aligned_cols=51 Identities=29% Similarity=0.300 Sum_probs=34.9
Q ss_pred HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCe-EEEEecCCCCHHHHHHHHHcC
Q 020528 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYR-LIITMPASMSLERRMVLLAFG 116 (325)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~-~~i~~p~~~~~~~~~~~~~~G 116 (325)
+...+.++.+.+|. +.|..|.++...|+.+|.+ ++++ ..+..+...++.+|
T Consensus 91 ~~~~~~~g~~vlI~-g~g~vg~~~i~~a~~~g~~~vi~~---~~~~~~~~~~~~~g 142 (277)
T cd08255 91 RDAEPRLGERVAVV-GLGLVGLLAAQLAKAAGAREVVGV---DPDAARRELAEALG 142 (277)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEE---CCCHHHHHHHHHcC
Confidence 34556677666666 4688899998899999988 4433 22455566667676
No 394
>PRK12746 short chain dehydrogenase; Provisional
Probab=43.51 E-value=1.9e+02 Score=24.82 Aligned_cols=54 Identities=19% Similarity=0.188 Sum_probs=35.6
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCH--HHHHHHHHcCCEEEEeC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL--ERRMVLLAFGAELVLTD 123 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~--~~~~~~~~~Ga~v~~~~ 123 (325)
++.+|+.++|--|.++|....+.|.++++...++... .....+...+.++..+.
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~ 62 (254)
T PRK12746 7 KVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESNGGKAFLIE 62 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 3678999999999999999888898877665443211 11223444466665554
No 395
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=43.49 E-value=79 Score=29.69 Aligned_cols=50 Identities=20% Similarity=0.248 Sum_probs=30.6
Q ss_pred CCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 020528 67 RPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119 (325)
Q Consensus 67 ~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 119 (325)
++|.+.+|. .+|.-|.+++..|+.+|.+.+++.+. +..+...++.+|++.
T Consensus 177 ~~g~~VlV~-G~G~vG~~avq~Ak~~Ga~Vi~~~~~--~~~~~~~a~~lGa~~ 226 (375)
T PLN02178 177 ESGKRLGVN-GLGGLGHIAVKIGKAFGLRVTVISRS--SEKEREAIDRLGADS 226 (375)
T ss_pred CCCCEEEEE-cccHHHHHHHHHHHHcCCeEEEEeCC--hHHhHHHHHhCCCcE
Confidence 355455554 45788888888888888874444222 233355556777753
No 396
>PRK12747 short chain dehydrogenase; Provisional
Probab=43.21 E-value=1.4e+02 Score=25.74 Aligned_cols=54 Identities=17% Similarity=0.108 Sum_probs=36.1
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCC--CHHHHHHHHHcCCEEEEeC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM--SLERRMVLLAFGAELVLTD 123 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~--~~~~~~~~~~~Ga~v~~~~ 123 (325)
+..+|+.++|--|.++|......|.++++...... .......++..|.++..+.
T Consensus 5 k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (252)
T PRK12747 5 KVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIG 60 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhcCCceEEEe
Confidence 47789999999999999999999988776543221 1222344555566655443
No 397
>PRK06101 short chain dehydrogenase; Provisional
Probab=43.19 E-value=2e+02 Score=24.58 Aligned_cols=48 Identities=23% Similarity=0.220 Sum_probs=33.1
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 121 (325)
..+|+.++|.-|.++|..-...|.+++++.. +..+.+.+...+.++..
T Consensus 3 ~vlItGas~giG~~la~~L~~~G~~V~~~~r---~~~~~~~~~~~~~~~~~ 50 (240)
T PRK06101 3 AVLITGATSGIGKQLALDYAKQGWQVIACGR---NQSVLDELHTQSANIFT 50 (240)
T ss_pred EEEEEcCCcHHHHHHHHHHHhCCCEEEEEEC---CHHHHHHHHHhcCCCeE
Confidence 5688899999999999998888999776643 24455555444433433
No 398
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=43.07 E-value=79 Score=26.88 Aligned_cols=35 Identities=23% Similarity=0.189 Sum_probs=25.7
Q ss_pred eeecchHHHHHHHHHHHh-cCCCCCCEEEEEeCCCCC
Q 020528 268 LVGISSGAATAAAIQIAK-RPENAGKLIVVVFPSFGE 303 (325)
Q Consensus 268 ~~~p~sg~a~aa~~~~~~-~~~~~~~~vv~i~t~~g~ 303 (325)
+.++.|+-|+.-+++..+ +. ...++||+++|||.+
T Consensus 88 ~ag~~TadAi~~av~rl~~~~-~a~~kvvILLTDG~n 123 (191)
T cd01455 88 WSGDHTVEATEFAIKELAAKE-DFDEAIVIVLSDANL 123 (191)
T ss_pred ccCccHHHHHHHHHHHHHhcC-cCCCcEEEEEeCCCc
Confidence 567778888877777664 33 356789999999875
No 399
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=43.05 E-value=1.9e+02 Score=23.78 Aligned_cols=31 Identities=32% Similarity=0.445 Sum_probs=18.8
Q ss_pred CeEEEecCCChhH---HHHHHHHHHcCCeEEEEe
Q 020528 70 ESVLIEPTSGNTG---IGLAFMAAAKGYRLIITM 100 (325)
Q Consensus 70 ~~~vv~~ssGN~g---~alA~~a~~~g~~~~i~~ 100 (325)
.+.+|-+++||.| .++|..-+..|+++++++
T Consensus 26 ~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~ 59 (169)
T PF03853_consen 26 PRVLILCGPGNNGGDGLVAARHLANRGYNVTVYL 59 (169)
T ss_dssp -EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEE
Confidence 3566667777766 344444566888888743
No 400
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=42.92 E-value=72 Score=24.37 Aligned_cols=44 Identities=23% Similarity=0.332 Sum_probs=31.4
Q ss_pred hHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCC
Q 020528 164 TGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVES 213 (325)
Q Consensus 164 ~~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~ 213 (325)
.+.++.+++ +.+.||+..-+|.+.- .+....|...|+++.+...
T Consensus 7 aa~~~A~~~--~ak~Ivv~T~sG~ta~----~isk~RP~~pIiavt~~~~ 50 (117)
T PF02887_consen 7 AAVELAEDL--NAKAIVVFTESGRTAR----LISKYRPKVPIIAVTPNES 50 (117)
T ss_dssp HHHHHHHHH--TESEEEEE-SSSHHHH----HHHHT-TSSEEEEEESSHH
T ss_pred HHHHHHHhc--CCCEEEEECCCchHHH----HHHhhCCCCeEEEEcCcHH
Confidence 345777777 3788999999998754 4555679999999986544
No 401
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=42.85 E-value=43 Score=34.16 Aligned_cols=51 Identities=22% Similarity=0.249 Sum_probs=37.9
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCC---------C---------HHHHHHHHHcCCEEEE
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM---------S---------LERRMVLLAFGAELVL 121 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~---------~---------~~~~~~~~~~Ga~v~~ 121 (325)
+.|+.-++|-.|.+.|.+.++.|.+++||=.... + ......++.+|.++..
T Consensus 328 ~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~ 396 (654)
T PRK12769 328 KRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFEL 396 (654)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEEC
Confidence 5688889999999999999999999888843221 1 1235567778877653
No 402
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=42.82 E-value=36 Score=27.12 Aligned_cols=31 Identities=29% Similarity=0.427 Sum_probs=26.0
Q ss_pred EEecCCChhHHHHHHHHHHcCCeEEEEecCC
Q 020528 73 LIEPTSGNTGIGLAFMAAAKGYRLIITMPAS 103 (325)
Q Consensus 73 vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~ 103 (325)
++..++|.-+.+++..++.+|++++++=|+.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 4567899999999999999999999998874
No 403
>PLN02583 cinnamoyl-CoA reductase
Probab=42.76 E-value=1.8e+02 Score=26.12 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=28.8
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 102 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~ 102 (325)
++.+|+..+|--|.+++......|.+++++.+.
T Consensus 7 k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~ 39 (297)
T PLN02583 7 KSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQK 39 (297)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 467899999999999999999999999888764
No 404
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=42.46 E-value=1.5e+02 Score=28.74 Aligned_cols=29 Identities=21% Similarity=0.061 Sum_probs=24.3
Q ss_pred cCCChhHHHHHHHHHHcCCeEEEEecCCC
Q 020528 76 PTSGNTGIGLAFMAAAKGYRLIITMPASM 104 (325)
Q Consensus 76 ~ssGN~g~alA~~a~~~g~~~~i~~p~~~ 104 (325)
.+=|.+..+|+.+-+++|.++.|++|.-.
T Consensus 17 GGl~~~v~~L~~aL~~~G~~v~v~~p~y~ 45 (473)
T TIGR02095 17 GGLADVVGALPKALAALGHDVRVLLPAYG 45 (473)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 33478889999999999999999999753
No 405
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=42.44 E-value=2.2e+02 Score=25.52 Aligned_cols=84 Identities=14% Similarity=0.062 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHHHHhCCCCCCCeEEEecCCCh----hHH-HHHHHHHHcCCeEEEEec--CCCCHHHHHHHHHcCCEEEE
Q 020528 49 KDRIGYSMIADAEEKGLIRPGESVLIEPTSGN----TGI-GLAFMAAAKGYRLIITMP--ASMSLERRMVLLAFGAELVL 121 (325)
Q Consensus 49 K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN----~g~-alA~~a~~~g~~~~i~~p--~~~~~~~~~~~~~~Ga~v~~ 121 (325)
+....+.++...++++.- .-++..+--| .|. .....|+..|+..+++.+ ...+......++.+|-+.++
T Consensus 77 t~~~~lel~~~~r~~~~~----~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~ 152 (265)
T COG0159 77 TLEDTLELVEEIRAKGVK----VPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIF 152 (265)
T ss_pred CHHHHHHHHHHHHhcCCC----CCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEE
Confidence 344455566666655541 2344444433 232 223356777777776632 23444556666677776665
Q ss_pred eCCCCChhHHHHHHH
Q 020528 122 TDPARGMKGAVQKAE 136 (325)
Q Consensus 122 ~~~~~~~~~~~~~a~ 136 (325)
.-...+.+++.+...
T Consensus 153 lvaPtt~~~rl~~i~ 167 (265)
T COG0159 153 LVAPTTPDERLKKIA 167 (265)
T ss_pred EeCCCCCHHHHHHHH
Confidence 543333444444333
No 406
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=42.44 E-value=2.8e+02 Score=25.58 Aligned_cols=53 Identities=26% Similarity=0.384 Sum_probs=35.1
Q ss_pred HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCC
Q 020528 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGA 117 (325)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga 117 (325)
+...+.++.+.+|. ..|..|.+++..|+.+|.+.++++.. +..+...++.+|+
T Consensus 176 ~~~~~~~g~~vLI~-g~g~vG~a~i~lak~~G~~~Vi~~~~--~~~~~~~~~~~g~ 228 (363)
T cd08279 176 NTARVRPGDTVAVI-GCGGVGLNAIQGARIAGASRIIAVDP--VPEKLELARRFGA 228 (363)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEEcC--CHHHHHHHHHhCC
Confidence 33455667677776 56889999999999999863333322 3445556666776
No 407
>PRK06924 short chain dehydrogenase; Provisional
Probab=42.42 E-value=1.8e+02 Score=24.91 Aligned_cols=52 Identities=21% Similarity=0.212 Sum_probs=33.8
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 123 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 123 (325)
..+|+.++|.-|.++|......|.+++++.... ...........+.+++.+.
T Consensus 3 ~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~ 54 (251)
T PRK06924 3 YVIITGTSQGLGEAIANQLLEKGTHVISISRTE-NKELTKLAEQYNSNLTFHS 54 (251)
T ss_pred EEEEecCCchHHHHHHHHHHhcCCEEEEEeCCc-hHHHHHHHhccCCceEEEE
Confidence 468888889999999999888899877665432 1222222333455555443
No 408
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=42.14 E-value=3e+02 Score=25.94 Aligned_cols=15 Identities=27% Similarity=0.647 Sum_probs=11.4
Q ss_pred CCCCEEEEecCCchhH
Q 020528 174 GKIDALVSGIGTGGTV 189 (325)
Q Consensus 174 ~~~D~iv~pvG~Gg~~ 189 (325)
.++| +|+++|+|..+
T Consensus 78 ~~~D-~IIaiGGGS~i 92 (386)
T cd08191 78 AGPD-VIIGLGGGSCI 92 (386)
T ss_pred cCCC-EEEEeCCchHH
Confidence 4688 57789988776
No 409
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=42.11 E-value=2.1e+02 Score=25.95 Aligned_cols=51 Identities=24% Similarity=0.224 Sum_probs=34.5
Q ss_pred CCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 020528 66 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120 (325)
Q Consensus 66 ~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 120 (325)
+.+|.+.+|.+ .|..|.+++..|+.+|++++++.+ +..+...++.+|++-+
T Consensus 167 ~~~g~~vlV~g-~g~vG~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~v 217 (337)
T cd05283 167 VGPGKRVGVVG-IGGLGHLAVKFAKALGAEVTAFSR---SPSKKEDALKLGADEF 217 (337)
T ss_pred CCCCCEEEEEC-CcHHHHHHHHHHHHcCCeEEEEcC---CHHHHHHHHHcCCcEE
Confidence 56666666754 688999998899999987555533 2345566666776543
No 410
>PRK07063 short chain dehydrogenase; Provisional
Probab=42.08 E-value=2.2e+02 Score=24.66 Aligned_cols=32 Identities=16% Similarity=0.183 Sum_probs=26.0
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEec
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMP 101 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p 101 (325)
+..+|+.++|--|.++|......|.+++++..
T Consensus 8 k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r 39 (260)
T PRK07063 8 KVALVTGAAQGIGAAIARAFAREGAAVALADL 39 (260)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 36788888888999999998889998766543
No 411
>PRK07023 short chain dehydrogenase; Provisional
Probab=42.01 E-value=1.4e+02 Score=25.47 Aligned_cols=50 Identities=16% Similarity=0.141 Sum_probs=35.1
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 124 (325)
+.+|+.++|.-|.++|......|.+++++.....+ . .....|.++..+..
T Consensus 3 ~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~-~---~~~~~~~~~~~~~~ 52 (243)
T PRK07023 3 RAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHP-S---LAAAAGERLAEVEL 52 (243)
T ss_pred eEEEecCCcchHHHHHHHHHhCCCEEEEEecCcch-h---hhhccCCeEEEEEe
Confidence 56889999999999999988899998776543322 1 13445666665543
No 412
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=41.97 E-value=1.5e+02 Score=27.70 Aligned_cols=44 Identities=23% Similarity=0.295 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHcCCeEEEEecCCC--CHHHHH----HHHHcCCEEEEeC
Q 020528 80 NTGIGLAFMAAAKGYRLIITMPASM--SLERRM----VLLAFGAELVLTD 123 (325)
Q Consensus 80 N~g~alA~~a~~~g~~~~i~~p~~~--~~~~~~----~~~~~Ga~v~~~~ 123 (325)
|.+.|+...++++|++++++.|+.. +...+. ..+..|+++...+
T Consensus 168 ~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 217 (334)
T PRK12562 168 NMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTE 217 (334)
T ss_pred CHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEc
Confidence 7888999999999999999998873 222232 2345688877665
No 413
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=41.92 E-value=2.6e+02 Score=25.19 Aligned_cols=50 Identities=22% Similarity=0.213 Sum_probs=33.6
Q ss_pred CCCCCCeEEEecCCChhHHHHHHHHHHcC-CeEEEEecCCCCHHHHHHHHHcCCE
Q 020528 65 LIRPGESVLIEPTSGNTGIGLAFMAAAKG-YRLIITMPASMSLERRMVLLAFGAE 118 (325)
Q Consensus 65 ~~~~g~~~vv~~ssGN~g~alA~~a~~~g-~~~~i~~p~~~~~~~~~~~~~~Ga~ 118 (325)
.+.++.+.+|.. +|..|.+++..|+.+| .+++++.+ +..+.+.++.+|++
T Consensus 164 ~~~~~~~vlI~g-~~~vg~~~~~~a~~~g~~~v~~~~~---~~~~~~~~~~~g~~ 214 (340)
T cd05284 164 YLDPGSTVVVIG-VGGLGHIAVQILRALTPATVIAVDR---SEEALKLAERLGAD 214 (340)
T ss_pred cCCCCCEEEEEc-CcHHHHHHHHHHHHhCCCcEEEEeC---CHHHHHHHHHhCCc
Confidence 345566667766 5569999999999998 66655432 34556666777763
No 414
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=41.90 E-value=1.7e+02 Score=27.46 Aligned_cols=14 Identities=29% Similarity=0.454 Sum_probs=10.8
Q ss_pred CCCEEEEecCCchhH
Q 020528 175 KIDALVSGIGTGGTV 189 (325)
Q Consensus 175 ~~D~iv~pvG~Gg~~ 189 (325)
++| +|+++|+|..+
T Consensus 77 ~~D-~IIavGGGs~~ 90 (367)
T cd08182 77 GPD-AVLAVGGGSVL 90 (367)
T ss_pred CcC-EEEEeCCcHHH
Confidence 588 57789988766
No 415
>PRK05872 short chain dehydrogenase; Provisional
Probab=41.73 E-value=2.2e+02 Score=25.49 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=26.0
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEe
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITM 100 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~ 100 (325)
+..+|+..+|.-|.++|......|.+++++-
T Consensus 10 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~ 40 (296)
T PRK05872 10 KVVVVTGAARGIGAELARRLHARGAKLALVD 40 (296)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 4778999999999999999999998766553
No 416
>PRK11609 nicotinamidase/pyrazinamidase; Provisional
Probab=41.71 E-value=2.1e+02 Score=24.32 Aligned_cols=59 Identities=19% Similarity=0.167 Sum_probs=41.4
Q ss_pred HHHhCCCCCCCeEEEecCCChhH-HHHHHHHHHcCCeEEEEecCCCC--------HHHHHHHHHcCCEEEEe
Q 020528 60 AEEKGLIRPGESVLIEPTSGNTG-IGLAFMAAAKGYRLIITMPASMS--------LERRMVLLAFGAELVLT 122 (325)
Q Consensus 60 a~~~g~~~~g~~~vv~~ssGN~g-~alA~~a~~~g~~~~i~~p~~~~--------~~~~~~~~~~Ga~v~~~ 122 (325)
+.+.|. .+.+++.-..|.+ .+.|.-|..+|++++|+-+.... ..-++.|...|++|+..
T Consensus 137 L~~~gi----~~lii~G~~T~~CV~~Ta~dA~~~gy~v~v~~Da~a~~~~~~~~~~~al~~~~~~~~~v~t~ 204 (212)
T PRK11609 137 LREHGI----TELIVMGLATDYCVKFTVLDALALGYQVNVITDGCRGVNLQPQDSAHAFMEMSAAGATLYTL 204 (212)
T ss_pred HHHcCC----CEEEEEEeccCHHHHHHHHHHHHCCCEEEEEeeccCCCCCCchhHHHHHHHHHHCCCEEEEH
Confidence 345565 2567777778887 57778899999999998875422 22466777788888644
No 417
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=41.53 E-value=1e+02 Score=29.30 Aligned_cols=51 Identities=20% Similarity=0.172 Sum_probs=33.3
Q ss_pred hCCCCCCCeEEEecCCChhHHHHHHHHHHcCC--eEEEEecCCCCHHHHHHHHHc
Q 020528 63 KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGY--RLIITMPASMSLERRMVLLAF 115 (325)
Q Consensus 63 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~--~~~i~~p~~~~~~~~~~~~~~ 115 (325)
+..+++|.+.+|...+|--|..++..|+.+|. ..++.+ +.+..|++.++.+
T Consensus 170 ~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~--~~~~~r~~~a~~~ 222 (410)
T cd08238 170 RMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVT--DVNDERLARAQRL 222 (410)
T ss_pred hcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEE--cCCHHHHHHHHHh
Confidence 34556776777766678899988888888775 223333 3355666666664
No 418
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=41.32 E-value=2.1e+02 Score=24.27 Aligned_cols=54 Identities=17% Similarity=0.190 Sum_probs=35.6
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCH--HHHHHHHHcCCEEEEeCC
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSL--ERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~--~~~~~~~~~Ga~v~~~~~ 124 (325)
..+|+..+|.-|..+|......|.+++++..++.+. .....+...+.++..+..
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (242)
T TIGR01829 2 IALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGALGFDFRVVEG 57 (242)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCceEEEEe
Confidence 468888899999999999989999877765533211 112234445666655543
No 419
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=41.21 E-value=1.9e+02 Score=24.77 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=27.9
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 102 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~ 102 (325)
++.+|+..+|.-|.+++....+.|.+++++...
T Consensus 9 k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~ 41 (252)
T PRK08220 9 KTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQA 41 (252)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEecc
Confidence 467888888999999999988899998877554
No 420
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=41.09 E-value=55 Score=25.90 Aligned_cols=35 Identities=31% Similarity=0.492 Sum_probs=23.0
Q ss_pred CCCCCeEEEecCCChhHH--HHHHHHHHcCCeEEEEe
Q 020528 66 IRPGESVLIEPTSGNTGI--GLAFMAAAKGYRLIITM 100 (325)
Q Consensus 66 ~~~g~~~vv~~ssGN~g~--alA~~a~~~g~~~~i~~ 100 (325)
++||.-.|+.++|||+.. ..+..|+..|++++.+.
T Consensus 101 ~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 101 IRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp --TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 356656777778898875 45666999999998875
No 421
>PRK13984 putative oxidoreductase; Provisional
Probab=41.03 E-value=95 Score=31.28 Aligned_cols=51 Identities=22% Similarity=0.309 Sum_probs=37.8
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCC--------------C----HHHHHHHHHcCCEEEE
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM--------------S----LERRMVLLAFGAELVL 121 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~--------------~----~~~~~~~~~~Ga~v~~ 121 (325)
+.|+.-++|..|.+.|...++.|++++|+=.... + ......++.+|.+++.
T Consensus 284 ~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~ 352 (604)
T PRK13984 284 KKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHL 352 (604)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEEC
Confidence 4466666999999999999999999998843321 1 3345678889988754
No 422
>PRK12742 oxidoreductase; Provisional
Probab=40.89 E-value=2.2e+02 Score=24.05 Aligned_cols=53 Identities=23% Similarity=0.181 Sum_probs=36.1
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHH-HHHcCCEEEEeCC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMV-LLAFGAELVLTDP 124 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~-~~~~Ga~v~~~~~ 124 (325)
++.+|+..+|.-|.++|......|.++++....+ ..+.+. ....+.+.+.++-
T Consensus 7 k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~--~~~~~~l~~~~~~~~~~~D~ 60 (237)
T PRK12742 7 KKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGS--KDAAERLAQETGATAVQTDS 60 (237)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEecCCC--HHHHHHHHHHhCCeEEecCC
Confidence 4678898899999999999888999876654432 222222 2445776665554
No 423
>PRK06123 short chain dehydrogenase; Provisional
Probab=40.78 E-value=2.1e+02 Score=24.36 Aligned_cols=53 Identities=19% Similarity=0.263 Sum_probs=34.2
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCC--CHHHHHHHHHcCCEEEEeC
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM--SLERRMVLLAFGAELVLTD 123 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~--~~~~~~~~~~~Ga~v~~~~ 123 (325)
..+|+..+|.-|.++|..-.+.|..+++....+. .......++..|.+++.+.
T Consensus 4 ~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 58 (248)
T PRK06123 4 VMIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQGGEALAVA 58 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHHHHhCCCcEEEEE
Confidence 5688888899999999888788877554432221 1122334566677666554
No 424
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=40.77 E-value=1.8e+02 Score=27.23 Aligned_cols=22 Identities=23% Similarity=0.225 Sum_probs=14.0
Q ss_pred HHHhhhC-CCCCEEEEecCCchhH
Q 020528 167 EIWKGTG-GKIDALVSGIGTGGTV 189 (325)
Q Consensus 167 Ei~~ql~-~~~D~iv~pvG~Gg~~ 189 (325)
++.++.. .++| +|+++|+|+.+
T Consensus 72 ~~~~~~~~~~~d-~IIaiGGGSvi 94 (370)
T cd08192 72 AGLAAYRAGGCD-GVIAFGGGSAL 94 (370)
T ss_pred HHHHHHHhcCCC-EEEEeCCchHH
Confidence 4444432 3588 57789988876
No 425
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=40.76 E-value=2.7e+02 Score=24.91 Aligned_cols=81 Identities=14% Similarity=0.092 Sum_probs=42.6
Q ss_pred EEEEeCCCCCCC-ChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCC-----CHHH
Q 020528 35 IAAKLEMMEPCS-SVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM-----SLER 108 (325)
Q Consensus 35 l~~K~E~~nptG-S~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~-----~~~~ 108 (325)
|.+..|.-.-.| .|=.|+. .+.....++|. .-.+++-..++... ...+..|+++..+ |... ....
T Consensus 2 i~ir~Da~~~iG~GHv~Rcl-~LA~~l~~~g~----~v~f~~~~~~~~~~---~~i~~~g~~v~~~-~~~~~~~~d~~~~ 72 (279)
T TIGR03590 2 ILFRADASSEIGLGHVMRCL-TLARALHAQGA----EVAFACKPLPGDLI---DLLLSAGFPVYEL-PDESSRYDDALEL 72 (279)
T ss_pred EEEEecCCccccccHHHHHH-HHHHHHHHCCC----EEEEEeCCCCHHHH---HHHHHcCCeEEEe-cCCCchhhhHHHH
Confidence 445555544434 4445443 23344445564 12344444333322 2446788886654 4432 1235
Q ss_pred HHHHHHcCCEEEEeCC
Q 020528 109 RMVLLAFGAELVLTDP 124 (325)
Q Consensus 109 ~~~~~~~Ga~v~~~~~ 124 (325)
...++..+.++++++.
T Consensus 73 ~~~l~~~~~d~vV~D~ 88 (279)
T TIGR03590 73 INLLEEEKFDILIVDH 88 (279)
T ss_pred HHHHHhcCCCEEEEcC
Confidence 6677777888999986
No 426
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=40.68 E-value=3.1e+02 Score=25.57 Aligned_cols=113 Identities=21% Similarity=0.225 Sum_probs=72.0
Q ss_pred CCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCC
Q 020528 64 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTP 143 (325)
Q Consensus 64 g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~ 143 (325)
-.++|| .+++..+-|.-|.|+++-|+..|-.=+|=++ ..+.|.+..+.+|++=
T Consensus 188 Akv~~G-stvAVfGLG~VGLav~~Gaka~GAsrIIgvD--iN~~Kf~~ak~fGaTe------------------------ 240 (375)
T KOG0022|consen 188 AKVEPG-STVAVFGLGGVGLAVAMGAKAAGASRIIGVD--INPDKFEKAKEFGATE------------------------ 240 (375)
T ss_pred cccCCC-CEEEEEecchHHHHHHHhHHhcCcccEEEEe--cCHHHHHHHHhcCcce------------------------
Confidence 345666 5577788888999999999988865554443 3455666666666532
Q ss_pred CeEEeCCCCCCcchHhHHhchHHHHH-hhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCc
Q 020528 144 NSYVLQQFENPANPKIHYETTGPEIW-KGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESA 214 (325)
Q Consensus 144 ~~~~~~~~~n~~~~~~g~~t~~~Ei~-~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~ 214 (325)
++||-+- . ..+ .|.+ |..++.+|+=|=++|+=.++.-....-+.-+...-++||.+.+..
T Consensus 241 ---~iNp~d~-----~--~~i-~evi~EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~iGv~~~~~~ 301 (375)
T KOG0022|consen 241 ---FINPKDL-----K--KPI-QEVIIEMTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVIGVAAAGQE 301 (375)
T ss_pred ---ecChhhc-----c--ccH-HHHHHHHhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEEEecCCCcc
Confidence 2222110 0 011 2322 223466898888998888877666666666667888999887764
No 427
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=40.68 E-value=1e+02 Score=28.64 Aligned_cols=35 Identities=14% Similarity=0.325 Sum_probs=20.5
Q ss_pred CCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecC
Q 020528 174 GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPV 211 (325)
Q Consensus 174 ~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~ 211 (325)
.++| +|+++|+|+.+ =++++..... ...+|.|-..
T Consensus 77 ~~~d-~iiavGGGs~~-D~aK~ia~~~-~~p~i~VPTt 111 (345)
T cd08171 77 QEAD-MIFAVGGGKAI-DTVKVLADKL-GKPVFTFPTI 111 (345)
T ss_pred cCCC-EEEEeCCcHHH-HHHHHHHHHc-CCCEEEecCc
Confidence 3578 57788877765 3455544433 3456666543
No 428
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=40.51 E-value=2.4e+02 Score=24.60 Aligned_cols=71 Identities=18% Similarity=0.095 Sum_probs=39.7
Q ss_pred CeEEEecCC--ChhHHHHHHHHHHcCCeEEEEecCC---CCHHHHHHHHHcCCEEEE--eCCCCChhHHHHHHHHHHHh
Q 020528 70 ESVLIEPTS--GNTGIGLAFMAAAKGYRLIITMPAS---MSLERRMVLLAFGAELVL--TDPARGMKGAVQKAEEIRDK 141 (325)
Q Consensus 70 ~~~vv~~ss--GN~g~alA~~a~~~g~~~~i~~p~~---~~~~~~~~~~~~Ga~v~~--~~~~~~~~~~~~~a~~~~~~ 141 (325)
+..+|+.++ +--|.++|....+.|.++++..... .....++.++..+.+++. ++- .+.++..+...+..++
T Consensus 7 k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl-~d~~~v~~~~~~~~~~ 84 (258)
T PRK07370 7 KKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDV-QDDAQIEETFETIKQK 84 (258)
T ss_pred cEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhccCcceEeecCc-CCHHHHHHHHHHHHHH
Confidence 366777754 5688888888888999877654221 123445555554444433 333 2334444444444443
No 429
>PRK06953 short chain dehydrogenase; Provisional
Probab=40.35 E-value=2.2e+02 Score=23.91 Aligned_cols=51 Identities=31% Similarity=0.323 Sum_probs=36.2
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 124 (325)
+.+|+..+|.-|.++|......|.+++++... ..+.+.++..+.+.+.++-
T Consensus 3 ~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~---~~~~~~~~~~~~~~~~~D~ 53 (222)
T PRK06953 3 TVLIVGASRGIGREFVRQYRADGWRVIATARD---AAALAALQALGAEALALDV 53 (222)
T ss_pred eEEEEcCCCchhHHHHHHHHhCCCEEEEEECC---HHHHHHHHhccceEEEecC
Confidence 56788889999999999888889987776443 3344555556766655554
No 430
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=40.29 E-value=2e+02 Score=24.22 Aligned_cols=52 Identities=27% Similarity=0.256 Sum_probs=35.4
Q ss_pred EEecCCChhHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCC
Q 020528 73 LIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS--LERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 73 vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~--~~~~~~~~~~Ga~v~~~~~ 124 (325)
+|+.++|-.|.++|......|.+++++.....+ ......++..|+++..+..
T Consensus 2 lItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (239)
T TIGR01830 2 LVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAYGVKALGVVC 55 (239)
T ss_pred EEECCCcHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEe
Confidence 677888889999999988889987666544311 1233455667877665543
No 431
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=40.23 E-value=2e+02 Score=27.14 Aligned_cols=14 Identities=29% Similarity=0.468 Sum_probs=10.7
Q ss_pred CCCEEEEecCCchhH
Q 020528 175 KIDALVSGIGTGGTV 189 (325)
Q Consensus 175 ~~D~iv~pvG~Gg~~ 189 (325)
++| +|+++|+|..+
T Consensus 84 ~~D-~IIaiGGGS~i 97 (383)
T cd08186 84 GAQ-AVIAIGGGSPI 97 (383)
T ss_pred CCC-EEEEeCCccHH
Confidence 578 57789888766
No 432
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=40.20 E-value=2.5e+02 Score=24.49 Aligned_cols=50 Identities=34% Similarity=0.472 Sum_probs=35.6
Q ss_pred CCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCC
Q 020528 64 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGA 117 (325)
Q Consensus 64 g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga 117 (325)
+.+.++.+.+|...+|..|.+++..++..|.+.+++.+. . +...++.+|+
T Consensus 140 ~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~---~-~~~~~~~~g~ 189 (309)
T cd05289 140 GGLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASA---A-NADFLRSLGA 189 (309)
T ss_pred cCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecc---h-hHHHHHHcCC
Confidence 446677666676667899999999999999987666542 2 4555566775
No 433
>PRK06847 hypothetical protein; Provisional
Probab=40.18 E-value=40 Score=31.35 Aligned_cols=31 Identities=13% Similarity=0.115 Sum_probs=27.1
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEec
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMP 101 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p 101 (325)
..|+.-++|-.|.++|...++.|++++|+=.
T Consensus 5 ~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~ 35 (375)
T PRK06847 5 KKVLIVGGGIGGLSAAIALRRAGIAVDLVEI 35 (375)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCEEEEec
Confidence 4577788999999999999999999988843
No 434
>PRK09126 hypothetical protein; Provisional
Probab=40.10 E-value=36 Score=31.90 Aligned_cols=30 Identities=17% Similarity=0.299 Sum_probs=26.6
Q ss_pred EEEecCCChhHHHHHHHHHHcCCeEEEEec
Q 020528 72 VLIEPTSGNTGIGLAFMAAAKGYRLIITMP 101 (325)
Q Consensus 72 ~vv~~ssGN~g~alA~~a~~~g~~~~i~~p 101 (325)
.|+..++|-.|.++|.+.++.|++++|+=.
T Consensus 5 dviIvGgG~aGl~~A~~L~~~G~~v~v~E~ 34 (392)
T PRK09126 5 DIVVVGAGPAGLSFARSLAGSGLKVTLIER 34 (392)
T ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEeC
Confidence 467788999999999999999999998854
No 435
>PRK05370 argininosuccinate synthase; Validated
Probab=40.10 E-value=3.6e+02 Score=26.21 Aligned_cols=131 Identities=17% Similarity=0.135 Sum_probs=69.1
Q ss_pred CCeEEEecCCChhHHHHHHHHHHcCCeEEEEecC-CCC-----HHHHHHHHHcCC-EEEEeCCCCChhHHHHHHHHHHHh
Q 020528 69 GESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA-SMS-----LERRMVLLAFGA-ELVLTDPARGMKGAVQKAEEIRDK 141 (325)
Q Consensus 69 g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~-~~~-----~~~~~~~~~~Ga-~v~~~~~~~~~~~~~~~a~~~~~~ 141 (325)
|++.|...|+|.--.-+...-+.-|++++.|.-. +.+ ..-.+.....|| +++.++-...|.+..-.+. +.
T Consensus 11 ~~KVvLAYSGGLDTSv~l~wL~e~~~eVia~~aDvGQ~~~ed~~~i~~kA~~~GA~~~~viDlr~eF~e~~i~aI---~a 87 (447)
T PRK05370 11 GQRVGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDCRAQLVAEGIAAI---QC 87 (447)
T ss_pred CCEEEEEecCCchHHHHHHHHHhcCCeEEEEEEECCCCCccchHHHHHHHHHhCCCEEEEeccHHHHHHHHHHHH---Hc
Confidence 4477778888754444444344449998877643 221 244556678999 6888875333322221221 11
Q ss_pred CCCeEEe----CCCCCCcchHhHHhchH---HHHHhhhCCCCCEEEE-ecCCchhHHHHHHHHHhhCCCcEEEEE
Q 020528 142 TPNSYVL----QQFENPANPKIHYETTG---PEIWKGTGGKIDALVS-GIGTGGTVTGAGKYLKEHNPEIKLYGV 208 (325)
Q Consensus 142 ~~~~~~~----~~~~n~~~~~~g~~t~~---~Ei~~ql~~~~D~iv~-pvG~Gg~~aGi~~~~k~~~~~~~vigV 208 (325)
+..|. +.|.... -...-.++ .|++++. ..|+|.- |+|-|---.=.-.+++.+.|+.+||+=
T Consensus 88 --nA~Y~~~~e~~Y~l~t--~LaRplia~~lv~~A~~~--ga~aIAHG~TGKGNDQvRFE~~~~aL~P~l~ViaP 156 (447)
T PRK05370 88 --GAFHISTGGVTYFNTT--PLGRAVTGTMLVAAMKED--GVNIWGDGSTYKGNDIERFYRYGLLTNPELKIYKP 156 (447)
T ss_pred --CCccccccCccccCCC--cchHHHHHHHHHHHHHHh--CCcEEEEcCCCCCCchHHHHHHHHHhCCCCeEecc
Confidence 22221 1111111 01112233 3444443 4676655 455666666667778888898888764
No 436
>PRK08339 short chain dehydrogenase; Provisional
Probab=39.97 E-value=1.9e+02 Score=25.35 Aligned_cols=32 Identities=22% Similarity=0.307 Sum_probs=26.6
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEec
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMP 101 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p 101 (325)
+..+|+.++|.-|.++|......|.+++++-.
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~V~~~~r 40 (263)
T PRK08339 9 KLAFTTASSKGIGFGVARVLARAGADVILLSR 40 (263)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 46788888889999999999999998776543
No 437
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=39.87 E-value=89 Score=29.27 Aligned_cols=55 Identities=15% Similarity=0.141 Sum_probs=38.6
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA 125 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (325)
..++..++|..+..++..+...+-.-.|++|.-+-......++..|++++.++.+
T Consensus 47 ~~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~~~~~~~G~~~v~~d~d 101 (375)
T PRK11706 47 AKVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIR 101 (375)
T ss_pred CeEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecC
Confidence 4567777887776665544323333467778777777788889999999999753
No 438
>PRK05868 hypothetical protein; Validated
Probab=39.83 E-value=41 Score=31.54 Aligned_cols=30 Identities=13% Similarity=0.316 Sum_probs=26.4
Q ss_pred EEEecCCChhHHHHHHHHHHcCCeEEEEec
Q 020528 72 VLIEPTSGNTGIGLAFMAAAKGYRLIITMP 101 (325)
Q Consensus 72 ~vv~~ssGN~g~alA~~a~~~g~~~~i~~p 101 (325)
.|+..++|-.|.++|...++.|++++|+=.
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~ 32 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRHGYSVTMVER 32 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Confidence 467789999999999999999999998853
No 439
>PRK06180 short chain dehydrogenase; Provisional
Probab=39.82 E-value=2.2e+02 Score=25.04 Aligned_cols=32 Identities=34% Similarity=0.323 Sum_probs=27.0
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEec
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMP 101 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p 101 (325)
++.+|+..+|--|.+++......|.+++++..
T Consensus 5 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~r 36 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAALAAGHRVVGTVR 36 (277)
T ss_pred CEEEEecCCChHHHHHHHHHHhCcCEEEEEeC
Confidence 36789999999999999998889999777654
No 440
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=39.72 E-value=2e+02 Score=26.82 Aligned_cols=53 Identities=32% Similarity=0.475 Sum_probs=36.5
Q ss_pred CCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 020528 64 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119 (325)
Q Consensus 64 g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 119 (325)
+.+.+|...+|. ..|..|.+++..|+.+|...++.+.. +..+...++.+|++-
T Consensus 199 ~~~~~g~~VlV~-g~g~vG~~ai~lA~~~G~~~vi~~~~--~~~~~~~~~~~g~~~ 251 (384)
T cd08265 199 GGFRPGAYVVVY-GAGPIGLAAIALAKAAGASKVIAFEI--SEERRNLAKEMGADY 251 (384)
T ss_pred CCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcC--CHHHHHHHHHcCCCE
Confidence 456677677776 56889999888999999854444432 334677777788743
No 441
>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]
Probab=39.57 E-value=1.6e+02 Score=28.43 Aligned_cols=104 Identities=16% Similarity=0.123 Sum_probs=57.2
Q ss_pred EecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCC--hhHHHHHHHHHHHh------CCCe
Q 020528 74 IEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG--MKGAVQKAEEIRDK------TPNS 145 (325)
Q Consensus 74 v~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~--~~~~~~~a~~~~~~------~~~~ 145 (325)
+..|+||+-.-.-..--..+-.-+|++.+-+=..-++.++++|++++.++-+++ .-+..+...+-..- .++.
T Consensus 127 iiit~G~t~~l~~~l~~~~N~gd~vlie~~ty~~AL~s~~a~gv~~ipv~md~~Gi~pE~l~~il~~w~~~~~k~~~p~v 206 (472)
T KOG0634|consen 127 IIITNGNTDGLFKVLRTLINRGDHVLIEEYTYPSALQSMEALGVKIIPVKMDQDGIDPESLEEILSNWKPGSYKKPKPHV 206 (472)
T ss_pred EEEecCCchHHHHHHHHhhcCCCceEEecccchHHHHhccccCceEEeccccCCCCCHHHHHHHHhcCCcccccCCCCeE
Confidence 345566554322222334455567788887778889999999999999985321 12333333222111 1233
Q ss_pred -EEeCCCCCCcchHhHHhchHHHHHh---hhCCCCCEEEEe
Q 020528 146 -YVLQQFENPANPKIHYETTGPEIWK---GTGGKIDALVSG 182 (325)
Q Consensus 146 -~~~~~~~n~~~~~~g~~t~~~Ei~~---ql~~~~D~iv~p 182 (325)
|.++.+.||.- .++..|--+ |+..+.|.+||.
T Consensus 207 lYTIPTgqNPTG-----~tls~errk~iy~LArKyDfLIVe 242 (472)
T KOG0634|consen 207 LYTIPTGQNPTG-----NTLSLERRKKIYQLARKYDFLIVE 242 (472)
T ss_pred EEeCcCCCCCCC-----CccCHHHHHHHHHHHHHcCEEEEe
Confidence 44566667753 234444333 334567777664
No 442
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=39.56 E-value=2.7e+02 Score=24.60 Aligned_cols=70 Identities=14% Similarity=0.044 Sum_probs=43.7
Q ss_pred HHHHHHcCC-EEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHHHHhhhC-CCCCEEEEe
Q 020528 109 RMVLLAFGA-ELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTG-GKIDALVSG 182 (325)
Q Consensus 109 ~~~~~~~Ga-~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~ql~-~~~D~iv~p 182 (325)
+++++..+. +++..+- ..--++.+.|.+++++. ...-+-...+|. +-|...+.+|++++-+ ..+|.=|+|
T Consensus 39 ~d~i~l~~~k~v~~s~m-~~Ei~Ra~~AielA~~G-~~ValVSsGDpg--VYgMA~lv~E~~~~~~~~~v~veVvP 110 (249)
T COG1010 39 LDLIELRPGKEVIRSGM-REEIERAKEAIELAAEG-RDVALVSSGDPG--VYGMAGLVLEAAEEEGWYDVDVEVVP 110 (249)
T ss_pred HHHHhcCCCCEEEeCCc-HhHHHHHHHHHHHHhcC-CeEEEEeCCCcc--HHHhHHHHHHHHHhcCCCCccEEEeC
Confidence 344444444 4444442 22335666777777775 344444445664 5788899999999864 468888888
No 443
>PRK07060 short chain dehydrogenase; Provisional
Probab=39.48 E-value=1.6e+02 Score=25.14 Aligned_cols=52 Identities=23% Similarity=0.185 Sum_probs=36.3
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHH-HHHcCCEEEEeCC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMV-LLAFGAELVLTDP 124 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~-~~~~Ga~v~~~~~ 124 (325)
++.+|+..+|.-|..++......|.+++++... ..+... ....+.+++.++-
T Consensus 10 ~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~---~~~~~~~~~~~~~~~~~~D~ 62 (245)
T PRK07060 10 KSVLVTGASSGIGRACAVALAQRGARVVAAARN---AAALDRLAGETGCEPLRLDV 62 (245)
T ss_pred CEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHHhCCeEEEecC
Confidence 467888888999999999999999986665432 233332 3445677766664
No 444
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=39.46 E-value=2.2e+02 Score=26.77 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=14.3
Q ss_pred HHHhhhC-CCCCEEEEecCCchhH
Q 020528 167 EIWKGTG-GKIDALVSGIGTGGTV 189 (325)
Q Consensus 167 Ei~~ql~-~~~D~iv~pvG~Gg~~ 189 (325)
++.++.. .++| +|+++|+|+.+
T Consensus 66 ~~~~~~~~~~~D-~IIaiGGGS~~ 88 (374)
T cd08183 66 AAVAEARNAGCD-VVIAIGGGSVI 88 (374)
T ss_pred HHHHHHHhcCCC-EEEEecCchHH
Confidence 3444332 3688 67899988876
No 445
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=39.46 E-value=3.1e+02 Score=25.47 Aligned_cols=45 Identities=11% Similarity=0.109 Sum_probs=31.8
Q ss_pred ChhHHHHHHHHHHcCCeEEEEec-CCC--CHHHHH----HHHHcCCEEEEeC
Q 020528 79 GNTGIGLAFMAAAKGYRLIITMP-ASM--SLERRM----VLLAFGAELVLTD 123 (325)
Q Consensus 79 GN~g~alA~~a~~~g~~~~i~~p-~~~--~~~~~~----~~~~~Ga~v~~~~ 123 (325)
+|...|++..+.++|++++++.| +.. +..-+. .++..|.++..+.
T Consensus 185 ~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 236 (335)
T PRK04523 185 TAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSH 236 (335)
T ss_pred cHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 47888999999999999999998 652 332232 2355688877665
No 446
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=39.34 E-value=1.8e+02 Score=26.42 Aligned_cols=51 Identities=25% Similarity=0.459 Sum_probs=34.2
Q ss_pred hCCCCCCCeEEEecCCChhHHHHHHHHHHcC-CeEEEEecCCCCHHHHHHHHHcCC
Q 020528 63 KGLIRPGESVLIEPTSGNTGIGLAFMAAAKG-YRLIITMPASMSLERRMVLLAFGA 117 (325)
Q Consensus 63 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g-~~~~i~~p~~~~~~~~~~~~~~Ga 117 (325)
...+.++.+.+|. ++|..|.+++..++.+| .++++ +. .+..+...++.+|+
T Consensus 161 ~~~~~~g~~vlI~-g~g~~g~~~~~~a~~~G~~~v~~-~~--~~~~~~~~~~~~g~ 212 (345)
T cd08286 161 NGKVKPGDTVAIV-GAGPVGLAALLTAQLYSPSKIIM-VD--LDDNRLEVAKKLGA 212 (345)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEE-Ec--CCHHHHHHHHHhCC
Confidence 3345666676775 45889999888999999 55443 32 34566666677776
No 447
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=39.31 E-value=91 Score=28.79 Aligned_cols=55 Identities=25% Similarity=0.459 Sum_probs=36.1
Q ss_pred EEEecCCChhHHHHHHHHHHc----CCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhC
Q 020528 72 VLIEPTSGNTGIGLAFMAAAK----GYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKT 142 (325)
Q Consensus 72 ~vv~~ssGN~g~alA~~a~~~----g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~ 142 (325)
-+++..+=|++-|+|+++... |=..++++|.+ |.+.....|.++.+.|.+++++.
T Consensus 80 illEP~gRnTApAIA~aa~~~~~~~~d~~~lVlpsD----------------H~I~d~~af~~av~~A~~~A~~g 138 (333)
T COG0836 80 IILEPEGRNTAPAIALAALSATAEGGDALVLVLPSD----------------HVIADEEAFLNAVKKAEKAAEEG 138 (333)
T ss_pred eEeccCCCCcHHHHHHHHHHHHHhCCCcEEEEecCc----------------ceeccHHHHHHHHHHHHHHHHcC
Confidence 678888889988888876533 33356677765 22222123667888888888774
No 448
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=39.20 E-value=54 Score=27.37 Aligned_cols=30 Identities=23% Similarity=0.365 Sum_probs=24.1
Q ss_pred EEecCCChhHHHHHHHHHHcCCeEEEEecC
Q 020528 73 LIEPTSGNTGIGLAFMAAAKGYRLIITMPA 102 (325)
Q Consensus 73 vv~~ssGN~g~alA~~a~~~g~~~~i~~p~ 102 (325)
|..-++|..|.++|..+...|++++++-+.
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~ 31 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRS 31 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SS
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 445677999999999999999999998664
No 449
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=39.08 E-value=1.6e+02 Score=26.64 Aligned_cols=32 Identities=13% Similarity=0.200 Sum_probs=22.4
Q ss_pred EEEecCCChhHHHHHHHHHHcCCeEEEEecCC
Q 020528 72 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS 103 (325)
Q Consensus 72 ~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~ 103 (325)
+++.-++|-.++|++++....|++-+.++.++
T Consensus 126 ~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt 157 (288)
T PRK12749 126 TMVLLGAGGASTAIGAQGAIEGLKEIKLFNRR 157 (288)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 44445566678998888888888766665554
No 450
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=39.06 E-value=1.9e+02 Score=22.64 Aligned_cols=51 Identities=18% Similarity=0.271 Sum_probs=29.4
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHH
Q 020528 82 GIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKA 135 (325)
Q Consensus 82 g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a 135 (325)
|..+|-.....|.+.+|. ...-+.-...++..|-+|+..++ .+.+++....
T Consensus 54 G~~~a~~l~~~gvdvvi~--~~iG~~a~~~l~~~GIkv~~~~~-~~V~e~i~~~ 104 (121)
T COG1433 54 GIRIAELLVDEGVDVVIA--SNIGPNAYNALKAAGIKVYVAPG-GTVEEAIKAF 104 (121)
T ss_pred hHHHHHHHHHcCCCEEEE--CccCHHHHHHHHHcCcEEEecCC-CCHHHHHHHH
Confidence 334444455555554444 23345556778888888888876 3455555433
No 451
>PRK07856 short chain dehydrogenase; Provisional
Probab=38.96 E-value=1.9e+02 Score=24.91 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=26.8
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEec
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMP 101 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p 101 (325)
++.+|+..+|--|.++|......|.+++++..
T Consensus 7 k~~lItGas~gIG~~la~~l~~~g~~v~~~~r 38 (252)
T PRK07856 7 RVVLVTGGTRGIGAGIARAFLAAGATVVVCGR 38 (252)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 46788999999999999998889998776654
No 452
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=38.88 E-value=2.4e+02 Score=26.00 Aligned_cols=54 Identities=24% Similarity=0.178 Sum_probs=34.2
Q ss_pred hCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 020528 63 KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119 (325)
Q Consensus 63 ~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 119 (325)
.+..++|.+.+|. .+|..|.+++..|+.+|.+.+++... +..+...++.+|++.
T Consensus 175 ~~~~~~g~~vlV~-G~G~vG~~av~~Ak~~G~~vi~~~~~--~~~~~~~~~~~Ga~~ 228 (357)
T PLN02514 175 FGLKQSGLRGGIL-GLGGVGHMGVKIAKAMGHHVTVISSS--DKKREEALEHLGADD 228 (357)
T ss_pred cccCCCCCeEEEE-cccHHHHHHHHHHHHCCCeEEEEeCC--HHHHHHHHHhcCCcE
Confidence 3444566565665 56889998888899999875554332 223334456688753
No 453
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=38.73 E-value=2.3e+02 Score=27.64 Aligned_cols=33 Identities=30% Similarity=0.311 Sum_probs=22.5
Q ss_pred eEEEecCCChhH---HHHHHHHHHcCCeEEEEecCC
Q 020528 71 SVLIEPTSGNTG---IGLAFMAAAKGYRLIITMPAS 103 (325)
Q Consensus 71 ~~vv~~ssGN~g---~alA~~a~~~g~~~~i~~p~~ 103 (325)
+.+|.++.||.| ..+|......|+++.|+++..
T Consensus 61 ~VlVlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~~ 96 (462)
T PLN03049 61 RVLALCGPGNNGGDGLVAARHLHHFGYKPSICYPKR 96 (462)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHCCCceEEEEECC
Confidence 556666666655 345555666799999998754
No 454
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=38.58 E-value=2.9e+02 Score=24.73 Aligned_cols=54 Identities=28% Similarity=0.389 Sum_probs=35.8
Q ss_pred HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 020528 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119 (325)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 119 (325)
+.+.+.++.+.++. ++|..|.+++..|+.+|.+++++.+ +..+.+.++.+|++-
T Consensus 159 ~~~~~~~~~~vli~-g~g~vG~~~~~la~~~G~~V~~~~~---s~~~~~~~~~~g~~~ 212 (338)
T cd08254 159 RAGEVKPGETVLVI-GLGGLGLNAVQIAKAMGAAVIAVDI---KEEKLELAKELGADE 212 (338)
T ss_pred hccCCCCCCEEEEE-CCcHHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHhCCCE
Confidence 34556666666665 4678889999999999988544422 455566666677643
No 455
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=38.50 E-value=3e+02 Score=24.86 Aligned_cols=64 Identities=20% Similarity=0.102 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020528 52 IGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 118 (325)
Q Consensus 52 ~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 118 (325)
.+...+..+.+.--..-..++++.-+.|+.|.++|..++.+|.+++++-+ +..+......+|.+
T Consensus 133 ~Ae~ai~~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R---~~~~~~~~~~~g~~ 196 (287)
T TIGR02853 133 TAEGAIMMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGAR---SSADLARITEMGLI 196 (287)
T ss_pred HHHHHHHHHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHCCCe
Confidence 34444555544311111124566677788999999998888887665533 23334444445544
No 456
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=38.48 E-value=1.1e+02 Score=28.53 Aligned_cols=108 Identities=15% Similarity=0.137 Sum_probs=54.4
Q ss_pred EEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhH--HHHHHHHHHHhCCC-eEEeCCC-CCCcchHhHHhchHHHHHhhh
Q 020528 97 IITMPASMSLERRMVLLAFGAELVLTDPARGMKG--AVQKAEEIRDKTPN-SYVLQQF-ENPANPKIHYETTGPEIWKGT 172 (325)
Q Consensus 97 ~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~--~~~~a~~~~~~~~~-~~~~~~~-~n~~~~~~g~~t~~~Ei~~ql 172 (325)
.|+.-.+.-..-...++.+| ++.++.+. .+.. ..+......++.+- +...+.+ .+|. . ..-.-+.++++.
T Consensus 3 ~i~~G~g~l~~l~~~l~~~g-r~lvVt~~-~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~~p~--~-~~v~~~~~~~~~- 76 (366)
T PF00465_consen 3 KIIFGRGALEELGEELKRLG-RVLVVTDP-SLSKSGLVDRVLDALEEAGIEVQVFDGVGPNPT--L-EDVDEAAEQARK- 76 (366)
T ss_dssp EEEESTTGGGGHHHHHHCTT-EEEEEEEH-HHHHHTHHHHHHHHHHHTTCEEEEEEEESSS-B--H-HHHHHHHHHHHH-
T ss_pred cEEEccCHHHHHHHHHHhcC-CEEEEECc-hHHhCccHHHHHHHHhhCceEEEEEecCCCCCc--H-HHHHHHHHHHHh-
Confidence 45555555455556677788 87777643 2332 34555554444421 2222211 1222 1 122223333343
Q ss_pred CCCCCEEEEecCCchhHHHHHHHHHhhCC------------------CcEEEEEecCCC
Q 020528 173 GGKIDALVSGIGTGGTVTGAGKYLKEHNP------------------EIKLYGVEPVES 213 (325)
Q Consensus 173 ~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~------------------~~~vigV~~~~~ 213 (325)
.++| .|+++|+|+.+- +++++..... ..++|.|-...+
T Consensus 77 -~~~D-~IIaiGGGS~~D-~aK~va~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~g 132 (366)
T PF00465_consen 77 -FGAD-CIIAIGGGSVMD-AAKAVALLLANPGDLRDLLGKGPPPTKPALPLIAIPTTAG 132 (366)
T ss_dssp -TTSS-EEEEEESHHHHH-HHHHHHHHHTSSSCGGGGGCECSCCSS--SEEEEEESSSS
T ss_pred -cCCC-EEEEcCCCCcCc-HHHHHHhhccCCCcHHHHHhhccccccCCCcEEEeeCCcc
Confidence 3689 677999888764 4444443221 268888866544
No 457
>PRK06482 short chain dehydrogenase; Provisional
Probab=38.46 E-value=2.1e+02 Score=25.01 Aligned_cols=32 Identities=25% Similarity=0.285 Sum_probs=26.9
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecC
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 102 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~ 102 (325)
+.+|+..+|.-|.++|......|.+++++...
T Consensus 4 ~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~ 35 (276)
T PRK06482 4 TWFITGASSGFGRGMTERLLARGDRVAATVRR 35 (276)
T ss_pred EEEEecCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 56889999999999999988899988777543
No 458
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=38.03 E-value=1.6e+02 Score=23.14 Aligned_cols=46 Identities=17% Similarity=0.126 Sum_probs=34.6
Q ss_pred EecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q 020528 74 IEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 123 (325)
Q Consensus 74 v~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 123 (325)
...+.|+-|.-+|+.-++.|.+++++.... +.+.++..|-++....
T Consensus 2 ~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~----~~~~~~~~g~~~~~~~ 47 (151)
T PF02558_consen 2 LIIGAGAIGSLYAARLAQAGHDVTLVSRSP----RLEAIKEQGLTITGPD 47 (151)
T ss_dssp EEESTSHHHHHHHHHHHHTTCEEEEEESHH----HHHHHHHHCEEEEETT
T ss_pred EEECcCHHHHHHHHHHHHCCCceEEEEccc----cHHhhhheeEEEEecc
Confidence 446789999999999888999988886642 5556777787665444
No 459
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=37.82 E-value=41 Score=32.32 Aligned_cols=31 Identities=19% Similarity=0.372 Sum_probs=23.8
Q ss_pred EEecCCChhHHHHHHHHHHcCCeEEEEecCC
Q 020528 73 LIEPTSGNTGIGLAFMAAAKGYRLIITMPAS 103 (325)
Q Consensus 73 vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~ 103 (325)
||+.++|-.|.+.|.+|++.|.++.++=+..
T Consensus 2 VVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~ 32 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAARAGAKVLLIEKGG 32 (428)
T ss_dssp EEEE--SHHHHHHHHHHHHTTS-EEEE-SSS
T ss_pred EEEECccHHHHHHHHHHHHCCCEEEEEECCc
Confidence 6778899999999999999999999986654
No 460
>PRK12827 short chain dehydrogenase; Provisional
Probab=37.67 E-value=2.5e+02 Score=23.77 Aligned_cols=55 Identities=24% Similarity=0.161 Sum_probs=37.3
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEecCC-CCHHH----HHHHHHcCCEEEEeCC
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS-MSLER----RMVLLAFGAELVLTDP 124 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~-~~~~~----~~~~~~~Ga~v~~~~~ 124 (325)
++.+|+..+|--|.++|......|.+++++.... ....+ ...++..|.++..+..
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (249)
T PRK12827 7 RRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAF 66 (249)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEc
Confidence 3678888899999999999888999877765422 12222 2344556777766654
No 461
>PRK10490 sensor protein KdpD; Provisional
Probab=37.40 E-value=3.5e+02 Score=28.91 Aligned_cols=107 Identities=10% Similarity=0.050 Sum_probs=60.9
Q ss_pred eEEEecCCChhHHHH----HHHHHHcCCeEEEEecCC-----CCH-------HHHHHHHHcCCEEEEeCCCCChhHHHHH
Q 020528 71 SVLIEPTSGNTGIGL----AFMAAAKGYRLIITMPAS-----MSL-------ERRMVLLAFGAELVLTDPARGMKGAVQK 134 (325)
Q Consensus 71 ~~vv~~ssGN~g~al----A~~a~~~g~~~~i~~p~~-----~~~-------~~~~~~~~~Ga~v~~~~~~~~~~~~~~~ 134 (325)
+.+||-|++-++..+ +..|.+++-+.+++.-.. .+. ..+++.+.+||+++.+.+. +..+.
T Consensus 252 riLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~~~~~~l~~~~~lA~~lGa~~~~~~~~----dva~~ 327 (895)
T PRK10490 252 AILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLPEKKRRAILSALRLAQELGAETATLSDP----AEEKA 327 (895)
T ss_pred eEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCC----CHHHH
Confidence 457777776666443 445667787776554321 111 2245667899999988763 23334
Q ss_pred HHHHHHhCC-CeEEeCCCCCCcchHhHHhchHHHHHhhhCCCCCEEEEecC
Q 020528 135 AEEIRDKTP-NSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIG 184 (325)
Q Consensus 135 a~~~~~~~~-~~~~~~~~~n~~~~~~g~~t~~~Ei~~ql~~~~D~iv~pvG 184 (325)
..+++++.+ ....+.+-..+. + ...+++...+++.. +++|..|+|..
T Consensus 328 i~~~A~~~~vt~IViG~s~~~~-~-~~~~s~~~~l~r~~-~~idi~iv~~~ 375 (895)
T PRK10490 328 VLRYAREHNLGKIIIGRRASRR-W-WRRESFADRLARLG-PDLDLVIVALD 375 (895)
T ss_pred HHHHHHHhCCCEEEECCCCCCC-C-ccCCCHHHHHHHhC-CCCCEEEEeCC
Confidence 445666552 123443322221 1 12347778888886 67887777643
No 462
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=37.37 E-value=1.3e+02 Score=29.03 Aligned_cols=52 Identities=21% Similarity=0.108 Sum_probs=38.9
Q ss_pred eEEEecCCChhHHHHHHHHHHcCC-eEEEEecCC-----CCHHHHHHHHHcCCEEEEe
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGY-RLIITMPAS-----MSLERRMVLLAFGAELVLT 122 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~-~~~i~~p~~-----~~~~~~~~~~~~Ga~v~~~ 122 (325)
+.|+.-++||.|.-+|..+.++|. +++++.+.+ ........++..|.+++.-
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~~~~~~~~~GV~i~~~ 331 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEEEVEHAKEEGVEFEWL 331 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHCCCEEEec
Confidence 456777899999999999999998 788776543 2344566777888887654
No 463
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=37.20 E-value=1.8e+02 Score=22.03 Aligned_cols=81 Identities=17% Similarity=0.178 Sum_probs=41.8
Q ss_pred HHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCC-ChhHHH
Q 020528 54 YSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPAR-GMKGAV 132 (325)
Q Consensus 54 ~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~-~~~~~~ 132 (325)
...+..|.+.+. +..|+...+|+++..+|.+ +-..|.+++.|.. ..-.++.-.+|..-+.++... +.++..
T Consensus 6 ~aa~~~A~~~~a----k~Ivv~T~sG~ta~~isk~--RP~~pIiavt~~~--~~~r~l~l~~GV~p~~~~~~~~~~~~~~ 77 (117)
T PF02887_consen 6 RAAVELAEDLNA----KAIVVFTESGRTARLISKY--RPKVPIIAVTPNE--SVARQLSLYWGVYPVLIEEFDKDTEELI 77 (117)
T ss_dssp HHHHHHHHHHTE----SEEEEE-SSSHHHHHHHHT---TSSEEEEEESSH--HHHHHGGGSTTEEEEECSSHSHSHHHHH
T ss_pred HHHHHHHHhcCC----CEEEEECCCchHHHHHHhh--CCCCeEEEEcCcH--HHHhhhhcccceEEEEeccccccHHHHH
Confidence 334444555553 1334444457777666443 3457777776642 222233345676666666533 455556
Q ss_pred HHHHHHHHhC
Q 020528 133 QKAEEIRDKT 142 (325)
Q Consensus 133 ~~a~~~~~~~ 142 (325)
+.+.+.+.+.
T Consensus 78 ~~a~~~~~~~ 87 (117)
T PF02887_consen 78 AEALEYAKER 87 (117)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 6666655554
No 464
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=37.12 E-value=2.8e+02 Score=24.13 Aligned_cols=31 Identities=23% Similarity=0.117 Sum_probs=23.5
Q ss_pred eEEEecCC--ChhHHHHHHHHHHcCCeEEEEec
Q 020528 71 SVLIEPTS--GNTGIGLAFMAAAKGYRLIITMP 101 (325)
Q Consensus 71 ~~vv~~ss--GN~g~alA~~a~~~g~~~~i~~p 101 (325)
..+|+..+ +--|.++|....+.|.++++...
T Consensus 12 ~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r 44 (258)
T PRK07533 12 RGLVVGIANEQSIAWGCARAFRALGAELAVTYL 44 (258)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeC
Confidence 56777755 36889999998889998766644
No 465
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=37.07 E-value=2.7e+02 Score=23.96 Aligned_cols=54 Identities=19% Similarity=0.201 Sum_probs=34.2
Q ss_pred eEEEecCC--ChhHHHHHHHHHHcCCeEEEEecCCC---------CHH---HHHHHHHcCCEEEEeCC
Q 020528 71 SVLIEPTS--GNTGIGLAFMAAAKGYRLIITMPASM---------SLE---RRMVLLAFGAELVLTDP 124 (325)
Q Consensus 71 ~~vv~~ss--GN~g~alA~~a~~~g~~~~i~~p~~~---------~~~---~~~~~~~~Ga~v~~~~~ 124 (325)
+.+|+..+ |.-|.++|..-...|..++++.+... ... ....++.+|.+++.+..
T Consensus 7 ~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (256)
T PRK12748 7 IALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEI 74 (256)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEEC
Confidence 56777766 36889999888888987776654310 111 22345566777776654
No 466
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=36.99 E-value=2.9e+02 Score=24.98 Aligned_cols=99 Identities=25% Similarity=0.327 Sum_probs=56.6
Q ss_pred HHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHH
Q 020528 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRD 140 (325)
Q Consensus 61 ~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~ 140 (325)
.+.+.+++|++.+|-+..|--|..+- +++++.|+.+|....+ +.-++.++
T Consensus 139 ~e~y~vkpGhtVlvhaAAGGVGlll~-----------------------Ql~ra~~a~tI~~asT-------aeK~~~ak 188 (336)
T KOG1197|consen 139 FEAYNVKPGHTVLVHAAAGGVGLLLC-----------------------QLLRAVGAHTIATAST-------AEKHEIAK 188 (336)
T ss_pred HHhcCCCCCCEEEEEeccccHHHHHH-----------------------HHHHhcCcEEEEEecc-------HHHHHHHH
Confidence 46678889988888888887777663 4555666666665532 11233444
Q ss_pred hCCCeEEeCCCCCCcchHhHHhchHHHHHhhhCC-CCCEEEEecCCchhHHHHHHHHHhh
Q 020528 141 KTPNSYVLQQFENPANPKIHYETTGPEIWKGTGG-KIDALVSGIGTGGTVTGAGKYLKEH 199 (325)
Q Consensus 141 ~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~ql~~-~~D~iv~pvG~Gg~~aGi~~~~k~~ 199 (325)
++ |..++..|. +..+-.|+.+-..+ .+|.++=++|.-+ +++-...+|..
T Consensus 189 en-G~~h~I~y~--------~eD~v~~V~kiTngKGVd~vyDsvG~dt-~~~sl~~Lk~~ 238 (336)
T KOG1197|consen 189 EN-GAEHPIDYS--------TEDYVDEVKKITNGKGVDAVYDSVGKDT-FAKSLAALKPM 238 (336)
T ss_pred hc-CCcceeecc--------chhHHHHHHhccCCCCceeeeccccchh-hHHHHHHhccC
Confidence 44 444433332 23333455444323 4898888887654 44444556543
No 467
>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]
Probab=36.98 E-value=4.3e+02 Score=26.19 Aligned_cols=91 Identities=22% Similarity=0.125 Sum_probs=67.4
Q ss_pred eEEEEeCCCCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH
Q 020528 34 RIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLL 113 (325)
Q Consensus 34 ~l~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~ 113 (325)
.+-++.|+..-|+|-=.-.+..+..-.+..|. ++|.+.-+.+....+=.-+.++|++.|+-.+-+=|.-.+.+..-.++
T Consensus 68 a~Vf~~eg~R~Tf~~~~~ev~slAaGll~lGL-~kGDrVgvwgpN~~~w~l~~lA~A~AG~v~v~~NP~Yq~~elr~~L~ 146 (596)
T KOG1177|consen 68 AAVFDHEGIRLTFSEFVSEVESLAAGLLSLGL-KKGDRVGVWGPNSYEWVLCQLACARAGLVLVNLNPAYQSEELRYVLK 146 (596)
T ss_pred EEEEeeccchhhHHHHHHHHHHHHhhHHhhcC-CCCCEEEEecCChHHHHHHHHHHHHhceEEeccCcccccHHHHHHHh
Confidence 46778888877664333366666666677774 66766666666666667888899999988777777767788888899
Q ss_pred HcCCEEEEeCCC
Q 020528 114 AFGAELVLTDPA 125 (325)
Q Consensus 114 ~~Ga~v~~~~~~ 125 (325)
-.|.++.+.+..
T Consensus 147 k~~~k~l~~p~~ 158 (596)
T KOG1177|consen 147 KVGCKALFAPPQ 158 (596)
T ss_pred hcCeEEEEccch
Confidence 999999999863
No 468
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=36.81 E-value=2.7e+02 Score=26.21 Aligned_cols=55 Identities=15% Similarity=0.117 Sum_probs=34.8
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA 125 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (325)
..++..++|..+..++..+...+=.-.|++|.-.-......+...|++++.++.+
T Consensus 47 ~~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~~~~~~~~~G~~~v~vd~d 101 (376)
T TIGR02379 47 KKALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIR 101 (376)
T ss_pred CeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecC
Confidence 4566666776665555443222222456667766666677778889999999853
No 469
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=36.72 E-value=1.3e+02 Score=24.38 Aligned_cols=45 Identities=29% Similarity=0.274 Sum_probs=33.8
Q ss_pred EEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 020528 72 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119 (325)
Q Consensus 72 ~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 119 (325)
+|-.-+-|+.|.++|......|++++++ +..+.+.+.+...|+++
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~~v~~~---d~~~~~~~~~~~~g~~~ 47 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGYEVTVY---DRSPEKAEALAEAGAEV 47 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTTEEEEE---ESSHHHHHHHHHTTEEE
T ss_pred EEEEEchHHHHHHHHHHHHhcCCeEEee---ccchhhhhhhHHhhhhh
Confidence 3445567999999999999999998887 34678888888778443
No 470
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=36.72 E-value=1.2e+02 Score=32.73 Aligned_cols=51 Identities=14% Similarity=0.206 Sum_probs=38.4
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCC--------------CC----HHHHHHHHHcCCEEEE
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPAS--------------MS----LERRMVLLAFGAELVL 121 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~--------------~~----~~~~~~~~~~Ga~v~~ 121 (325)
+.|+.-++|..|.+.|++.++.|.+++||=... .+ ...++.++.+|.+++.
T Consensus 540 KkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~ 608 (1019)
T PRK09853 540 KKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEF 608 (1019)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEe
Confidence 467788999999999999999999999885432 11 1224567778887754
No 471
>PRK06125 short chain dehydrogenase; Provisional
Probab=36.65 E-value=2e+02 Score=24.90 Aligned_cols=32 Identities=31% Similarity=0.298 Sum_probs=26.1
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEec
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMP 101 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p 101 (325)
++.+|+..+|.-|.++|......|..++++-.
T Consensus 8 k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r 39 (259)
T PRK06125 8 KRVLITGASKGIGAAAAEAFAAEGCHLHLVAR 39 (259)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC
Confidence 47788888899999999998889997666543
No 472
>PRK06753 hypothetical protein; Provisional
Probab=36.37 E-value=49 Score=30.70 Aligned_cols=30 Identities=13% Similarity=0.135 Sum_probs=26.2
Q ss_pred EEecCCChhHHHHHHHHHHcCCeEEEEecC
Q 020528 73 LIEPTSGNTGIGLAFMAAAKGYRLIITMPA 102 (325)
Q Consensus 73 vv~~ssGN~g~alA~~a~~~g~~~~i~~p~ 102 (325)
|+..++|-.|.++|...++.|++++|+=..
T Consensus 3 V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~ 32 (373)
T PRK06753 3 IAIIGAGIGGLTAAALLQEQGHEVKVFEKN 32 (373)
T ss_pred EEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 667889999999999999999999888543
No 473
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=36.36 E-value=1.7e+02 Score=23.85 Aligned_cols=41 Identities=15% Similarity=0.008 Sum_probs=27.8
Q ss_pred CCCeEEEecCCChh-HHHHHHHHHHcCCeEEEEecCCCCHHH
Q 020528 68 PGESVLIEPTSGNT-GIGLAFMAAAKGYRLIITMPASMSLER 108 (325)
Q Consensus 68 ~g~~~vv~~ssGN~-g~alA~~a~~~g~~~~i~~p~~~~~~~ 108 (325)
++...|+.+.+|+. +...+...+.+|++-+-++..+...++
T Consensus 115 ~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~ 156 (162)
T TIGR03865 115 KDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQ 156 (162)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHH
Confidence 44466667777874 455555568999987777777766654
No 474
>PF11814 DUF3335: Peptidase_C39 like family; InterPro: IPR021770 This family of proteins are functionally uncharacterised. This family is only found in bacteria. This presumed domain is typically between 226 to 230 amino acids in length.
Probab=36.31 E-value=93 Score=26.78 Aligned_cols=25 Identities=28% Similarity=0.541 Sum_probs=20.4
Q ss_pred ChhHHHHHHHHHHcCCeEEEEecCC
Q 020528 79 GNTGIGLAFMAAAKGYRLIITMPAS 103 (325)
Q Consensus 79 GN~g~alA~~a~~~g~~~~i~~p~~ 103 (325)
|.+-..||.+|++.|+++.+++...
T Consensus 53 GC~P~GLAlAA~rrG~~vev~~~~~ 77 (207)
T PF11814_consen 53 GCGPFGLALAAARRGFKVEVWVSTD 77 (207)
T ss_pred CcChHHHHHHHHHcCCceEEEECCC
Confidence 5566777778888999999999865
No 475
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=36.30 E-value=2.3e+02 Score=27.06 Aligned_cols=45 Identities=16% Similarity=0.105 Sum_probs=34.2
Q ss_pred ChhHHHHHHHHHHcCCeEEEEecCCC--CHHHHHH----HHHcCCEEEEeC
Q 020528 79 GNTGIGLAFMAAAKGYRLIITMPASM--SLERRMV----LLAFGAELVLTD 123 (325)
Q Consensus 79 GN~g~alA~~a~~~g~~~~i~~p~~~--~~~~~~~----~~~~Ga~v~~~~ 123 (325)
.|.+.|++..+.++|++++++-|+.. .+..+.. .+..|.++...+
T Consensus 204 ~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~ 254 (395)
T PRK07200 204 LSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVN 254 (395)
T ss_pred chHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 36779999999999999999999963 3443333 466788887765
No 476
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=36.24 E-value=1.4e+02 Score=22.88 Aligned_cols=49 Identities=16% Similarity=0.068 Sum_probs=24.8
Q ss_pred EEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 020528 72 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120 (325)
Q Consensus 72 ~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~ 120 (325)
.++.+..-.+...+--.|..+|++.+++.|.....+-.+.++..|.+++
T Consensus 58 lavv~~~~~~~~~~v~~~~~~g~~~v~~~~g~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 58 LAVVCVPPDKVPEIVDEAAALGVKAVWLQPGAESEELIEAAREAGIRVI 106 (116)
T ss_dssp EEEE-S-HHHHHHHHHHHHHHT-SEEEE-TTS--HHHHHHHHHTT-EEE
T ss_pred EEEEEcCHHHHHHHHHHHHHcCCCEEEEEcchHHHHHHHHHHHcCCEEE
Confidence 3444555555555555566667777777776555555666666665543
No 477
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=36.19 E-value=2.2e+02 Score=24.56 Aligned_cols=108 Identities=15% Similarity=0.149 Sum_probs=52.0
Q ss_pred HHHHHHHHhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCC---HHHHHHHHHcCC-EEEEeCCCCChhH
Q 020528 55 SMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMS---LERRMVLLAFGA-ELVLTDPARGMKG 130 (325)
Q Consensus 55 ~~~~~a~~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~---~~~~~~~~~~Ga-~v~~~~~~~~~~~ 130 (325)
+++....+.=.+++|. .|.+-++| .|...|..|+..| .|+.=+..+ ..-.+.++.+|- +|+..-++..
T Consensus 59 ~~vA~m~~~L~~~~g~-~VLEIGtG-sGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~--- 130 (209)
T COG2518 59 HMVARMLQLLELKPGD-RVLEIGTG-SGYQAAVLARLVG---RVVSIERIEELAEQARRNLETLGYENVTVRHGDGS--- 130 (209)
T ss_pred HHHHHHHHHhCCCCCC-eEEEECCC-chHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcc---
Confidence 3333333333345664 46666666 6777777888777 333323221 122333666776 5555543210
Q ss_pred HHHHHHHHHHhCCCeEEeCCCCCCcchHhHHhchHHHHHhhhCCCCCEEEEecC
Q 020528 131 AVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIG 184 (325)
Q Consensus 131 ~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~ql~~~~D~iv~pvG 184 (325)
.||---.||+--.. .++..++-.-+++||. .--.+|+|+|
T Consensus 131 ------------~G~~~~aPyD~I~V-taaa~~vP~~Ll~QL~-~gGrlv~PvG 170 (209)
T COG2518 131 ------------KGWPEEAPYDRIIV-TAAAPEVPEALLDQLK-PGGRLVIPVG 170 (209)
T ss_pred ------------cCCCCCCCcCEEEE-eeccCCCCHHHHHhcc-cCCEEEEEEc
Confidence 02222233322111 2233344445678874 2235777887
No 478
>PRK05875 short chain dehydrogenase; Provisional
Probab=36.17 E-value=2.7e+02 Score=24.35 Aligned_cols=32 Identities=22% Similarity=0.250 Sum_probs=26.7
Q ss_pred CeEEEecCCChhHHHHHHHHHHcCCeEEEEec
Q 020528 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMP 101 (325)
Q Consensus 70 ~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p 101 (325)
++.+|+.++|.-|.+++......|.+++++..
T Consensus 8 k~vlItGasg~IG~~la~~l~~~G~~V~~~~r 39 (276)
T PRK05875 8 RTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGR 39 (276)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEeC
Confidence 36788998999999999998889998766643
No 479
>PRK07550 hypothetical protein; Provisional
Probab=36.01 E-value=3.6e+02 Score=25.07 Aligned_cols=76 Identities=17% Similarity=0.122 Sum_probs=42.3
Q ss_pred CCChhhHHHHHHHHHHHHhCC-CCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q 020528 45 CSSVKDRIGYSMIADAEEKGL-IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD 123 (325)
Q Consensus 45 tGS~K~R~a~~~~~~a~~~g~-~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~ 123 (325)
.|.-..|.+..-... ...|. +.+ ..|+..++++.+..++..+- .+-.-.|+++.-.-..-...++..|++++.++
T Consensus 67 ~G~~~lr~~ia~~~~-~~~g~~~~~--~~i~~t~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~ 142 (386)
T PRK07550 67 EGLPELREAYAAHYS-RLYGAAISP--EQVHITSGCNQAFWAAMVTL-AGAGDEVILPLPWYFNHKMWLDMLGIRPVYLP 142 (386)
T ss_pred CCCHHHHHHHHHHHH-HHhCCCCCc--ceEEEecCcHHHHHHHHHHh-cCCCCEEEEcCCCCcchHHHHHhcCCEEEEEe
Confidence 466666654433211 12342 222 34666666677766655443 23334566665433344556788999999988
Q ss_pred C
Q 020528 124 P 124 (325)
Q Consensus 124 ~ 124 (325)
.
T Consensus 143 ~ 143 (386)
T PRK07550 143 C 143 (386)
T ss_pred c
Confidence 5
No 480
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=36.00 E-value=1.7e+02 Score=21.14 Aligned_cols=55 Identities=11% Similarity=0.109 Sum_probs=38.7
Q ss_pred eEEEecCCChhHHHHHH--HHHHcCCeEEEEecCCCCHHHHHHHHHc-CCEEEEeCCCC
Q 020528 71 SVLIEPTSGNTGIGLAF--MAAAKGYRLIITMPASMSLERRMVLLAF-GAELVLTDPAR 126 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~--~a~~~g~~~~i~~p~~~~~~~~~~~~~~-Ga~v~~~~~~~ 126 (325)
..++.+++-++.-|++. .|.+.+.|..++- ...+......++.+ ..+|+.+++..
T Consensus 26 ~~v~ia~g~~~~Dalsa~~~a~~~~~PIll~~-~~l~~~~~~~l~~~~~~~v~iiGg~~ 83 (92)
T PF04122_consen 26 DKVYIASGDNFADALSASPLAAKNNAPILLVN-NSLPSSVKAFLKSLNIKKVYIIGGEG 83 (92)
T ss_pred CEEEEEeCcchhhhhhhHHHHHhcCCeEEEEC-CCCCHHHHHHHHHcCCCEEEEECCCC
Confidence 45666666666655544 5777888877665 77788888888887 56888888653
No 481
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=35.97 E-value=2.9e+02 Score=25.89 Aligned_cols=52 Identities=21% Similarity=0.282 Sum_probs=33.4
Q ss_pred EEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 020528 73 LIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP 124 (325)
Q Consensus 73 vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~ 124 (325)
++..++|..|..++..+-..+-.-.|++|...-......+...|++++.++.
T Consensus 51 ~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~~~~~~~~~~~G~~~v~vd~ 102 (379)
T PRK11658 51 AIAVSSATAGMHITLMALGIGPGDEVITPSLTWVSTLNMIVLLGATPVMVDV 102 (379)
T ss_pred EEEECCHHHHHHHHHHHcCCCCCCEEEECCCcHHHHHHHHHHcCCEEEEEec
Confidence 4555667666665554432222235677776555666778889999999975
No 482
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=35.79 E-value=3.2e+02 Score=24.36 Aligned_cols=52 Identities=33% Similarity=0.457 Sum_probs=33.0
Q ss_pred CCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 020528 64 GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119 (325)
Q Consensus 64 g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 119 (325)
+.+.+|...++. .+|..|.+++..|+..|.++++..+ +..+.+.++.+|++-
T Consensus 156 ~~~~~g~~vli~-g~g~~g~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~ 207 (336)
T cd08276 156 GPLKPGDTVLVQ-GTGGVSLFALQFAKAAGARVIATSS---SDEKLERAKALGADH 207 (336)
T ss_pred cCCCCCCEEEEE-CCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCE
Confidence 455666565555 5677888888888888887554432 344555555555543
No 483
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=35.68 E-value=3.8e+02 Score=25.16 Aligned_cols=16 Identities=25% Similarity=0.650 Sum_probs=11.7
Q ss_pred CCCCEEEEecCCchhHH
Q 020528 174 GKIDALVSGIGTGGTVT 190 (325)
Q Consensus 174 ~~~D~iv~pvG~Gg~~a 190 (325)
.++| .|+++|+|+.+=
T Consensus 79 ~~~D-~IIaiGGGS~~D 94 (375)
T cd08194 79 GGCD-VIIALGGGSPID 94 (375)
T ss_pred cCCC-EEEEeCCchHHH
Confidence 3578 577899887764
No 484
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=35.50 E-value=2.8e+02 Score=23.54 Aligned_cols=131 Identities=15% Similarity=0.181 Sum_probs=0.0
Q ss_pred CCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEE
Q 020528 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYV 147 (325)
Q Consensus 68 ~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 147 (325)
|..+.+..-...-....+-..|+++|++-+.++..+++......- -.+.+++++..+.++..+.+.+..+.. +...
T Consensus 57 p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~---~~daiFIGGg~~i~~ile~~~~~l~~g-grlV 132 (187)
T COG2242 57 PSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLP---SPDAIFIGGGGNIEEILEAAWERLKPG-GRLV 132 (187)
T ss_pred CCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCC---CCCEEEECCCCCHHHHHHHHHHHcCcC-CeEE
Q ss_pred eCCCCCCcchHhHHhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEec
Q 020528 148 LQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEP 210 (325)
Q Consensus 148 ~~~~~n~~~~~~g~~t~~~Ei~~ql~~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~ 210 (325)
++-- .......+.|.++|++.. +.+-+-++-|.-+.+ +..|+..+|-+-+.++.+
T Consensus 133 ~nai------tlE~~~~a~~~~~~~g~~-ei~~v~is~~~~lg~-~~~~~~~nPv~i~~g~k~ 187 (187)
T COG2242 133 ANAI------TLETLAKALEALEQLGGR-EIVQVQISRGKPLGG-GTMFRPVNPVFIISGVKP 187 (187)
T ss_pred EEee------cHHHHHHHHHHHHHcCCc-eEEEEEeecceeccC-eeEeecCCCEEEEEEecC
No 485
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=35.42 E-value=1.5e+02 Score=27.44 Aligned_cols=52 Identities=17% Similarity=0.155 Sum_probs=38.3
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCe-EEEEecCC-----CCHHHHHHHHHcCCEEEEe
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYR-LIITMPAS-----MSLERRMVLLAFGAELVLT 122 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~-~~i~~p~~-----~~~~~~~~~~~~Ga~v~~~ 122 (325)
+.++..++|+.|.-+|......|.+ ++++.+.. .....++.++..|.+++.-
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~~~~~~~~~l~~~gi~i~~~ 230 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPAGKYEIERLIARGVEFLEL 230 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCCCCHHHHHHHHHcCCEEeec
Confidence 4577788999999999887888997 88886543 1234456678888877654
No 486
>PLN02477 glutamate dehydrogenase
Probab=35.24 E-value=1.7e+02 Score=28.12 Aligned_cols=52 Identities=15% Similarity=0.065 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHH-hCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecC
Q 020528 50 DRIGYSMIADAEE-KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 102 (325)
Q Consensus 50 ~R~a~~~~~~a~~-~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~ 102 (325)
-||..+.+..+.+ .|. .....+|+..+.||-|..+|......|.+++.+...
T Consensus 186 g~Gv~~~~~~~~~~~g~-~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~ 238 (410)
T PLN02477 186 GRGVVFATEALLAEHGK-SIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDI 238 (410)
T ss_pred hHHHHHHHHHHHHHcCC-CccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence 3567777766654 343 333356888889999999999999999888766553
No 487
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=35.21 E-value=1.5e+02 Score=30.36 Aligned_cols=52 Identities=21% Similarity=0.197 Sum_probs=40.3
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCC--------------C----HHHHHHHHHcCCEEEEe
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASM--------------S----LERRMVLLAFGAELVLT 122 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~--------------~----~~~~~~~~~~Ga~v~~~ 122 (325)
+.|+.-++|-.|.+.|...++.|.++++|-.... + ...++.++.+|.++..-
T Consensus 194 k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~ 263 (652)
T PRK12814 194 KKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFN 263 (652)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeC
Confidence 4678888999999999999999999998854321 1 23467788899988654
No 488
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=35.12 E-value=1.7e+02 Score=21.91 Aligned_cols=56 Identities=20% Similarity=0.026 Sum_probs=32.7
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC--CCChhHHHHHHHHH
Q 020528 83 IGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDP--ARGMKGAVQKAEEI 138 (325)
Q Consensus 83 ~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~--~~~~~~~~~~a~~~ 138 (325)
..+|.+.++.|+++.++=.......-.+.++.+..+++.+.. ..++....+.++..
T Consensus 18 ~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~ 75 (121)
T PF02310_consen 18 LYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVSMTPNLPEAKRLARAI 75 (121)
T ss_dssp HHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHH
Confidence 455666777788888663322235555677888888887764 12233444444443
No 489
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=35.00 E-value=3.8e+02 Score=24.94 Aligned_cols=47 Identities=15% Similarity=0.066 Sum_probs=33.7
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 119 (325)
++|..-+.||.|.++|...+..|++++++.+...... ...+..|.++
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~--~~A~~~G~~~ 64 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSW--KKAEADGFEV 64 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhH--HHHHHCCCee
Confidence 3466678899999999999999999888766543332 2344567643
No 490
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=34.93 E-value=2.2e+02 Score=26.31 Aligned_cols=43 Identities=14% Similarity=0.212 Sum_probs=23.4
Q ss_pred HHHHhhhC-CCCCEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecC
Q 020528 166 PEIWKGTG-GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPV 211 (325)
Q Consensus 166 ~Ei~~ql~-~~~D~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigV~~~ 211 (325)
.++.+++. .++| .|+.+|+|..+= +++++.... ..++|.|-..
T Consensus 67 ~~~~~~~~~~~~d-~IIaiGGGs~iD-~aK~ia~~~-~~p~i~IPTt 110 (337)
T cd08177 67 EAAVAAAREAGAD-GIVAIGGGSTID-LAKAIALRT-GLPIIAIPTT 110 (337)
T ss_pred HHHHHHHHhcCCC-EEEEeCCcHHHH-HHHHHHHHh-cCCEEEEcCC
Confidence 34444432 4578 577888877663 344443322 3456666543
No 491
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=34.90 E-value=2.1e+02 Score=26.65 Aligned_cols=44 Identities=25% Similarity=0.277 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHcCCeEEEEecCCC--CHHHH----HHHHHcCCEEEEeC
Q 020528 80 NTGIGLAFMAAAKGYRLIITMPASM--SLERR----MVLLAFGAELVLTD 123 (325)
Q Consensus 80 N~g~alA~~a~~~g~~~~i~~p~~~--~~~~~----~~~~~~Ga~v~~~~ 123 (325)
|.+.|+...++++|+.++++.|+.. +...+ ...+..|.++..++
T Consensus 168 ~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 217 (336)
T PRK03515 168 NMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTE 217 (336)
T ss_pred cHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEc
Confidence 6788888888888999988888763 22222 22345688877665
No 492
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=34.86 E-value=4.3e+02 Score=25.58 Aligned_cols=79 Identities=11% Similarity=-0.019 Sum_probs=45.5
Q ss_pred CCCCCChhhHHHHHHHHHHHHhCCCCCCCeEEEecCCChhHH---HHHHHHHHcCCeEEEEecCCCCH----HHHHHHHH
Q 020528 42 MEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGI---GLAFMAAAKGYRLIITMPASMSL----ERRMVLLA 114 (325)
Q Consensus 42 ~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~---alA~~a~~~g~~~~i~~p~~~~~----~~~~~~~~ 114 (325)
..|+||=|.-.+..+...+.++|. +..+.+.--.-.. -+..++.+.++++........+. .-++.++.
T Consensus 106 vG~~GvGKTTtaaKLA~~l~~~G~-----kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~ 180 (429)
T TIGR01425 106 VGLQGSGKTTTCTKLAYYYQRKGF-----KPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKK 180 (429)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCC-----CEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHh
Confidence 457888898888888777776664 3333222211112 22335777888876554433221 22344555
Q ss_pred cCCEEEEeCCC
Q 020528 115 FGAELVLTDPA 125 (325)
Q Consensus 115 ~Ga~v~~~~~~ 125 (325)
.+.++++++..
T Consensus 181 ~~~DvViIDTa 191 (429)
T TIGR01425 181 ENFDIIIVDTS 191 (429)
T ss_pred CCCCEEEEECC
Confidence 67888888753
No 493
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=34.71 E-value=1.2e+02 Score=26.78 Aligned_cols=52 Identities=19% Similarity=0.018 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHh-CCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecC
Q 020528 51 RIGYSMIADAEEK-GLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 102 (325)
Q Consensus 51 R~a~~~~~~a~~~-g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~ 102 (325)
++..+.+..+.+. +.-....++++.-+.||-|..+|..-..+|.+++.+...
T Consensus 12 ~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~ 64 (244)
T PF00208_consen 12 YGVAYAIEAALEHLGGDSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDS 64 (244)
T ss_dssp HHHHHHHHHHHHHTTCHSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEES
T ss_pred HHHHHHHHHHHHHcCCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence 4566666666655 432223467888888999999999999999998888654
No 494
>PRK13243 glyoxylate reductase; Reviewed
Probab=34.64 E-value=3e+02 Score=25.46 Aligned_cols=104 Identities=22% Similarity=0.163 Sum_probs=62.9
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEEeCC
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQ 150 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 150 (325)
++|..-+.|+-|.++|..++.+|++++++-+. .... ....+|.+. . +++ ++.++. +...++-
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~-~~~~---~~~~~~~~~---~---~l~-------ell~~a-DiV~l~l 212 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRT-RKPE---AEKELGAEY---R---PLE-------ELLRES-DFVSLHV 212 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCC-CChh---hHHHcCCEe---c---CHH-------HHHhhC-CEEEEeC
Confidence 46777788999999999999999987766443 2221 123445421 1 122 233343 4554433
Q ss_pred CCCCcchHhHHhchHHHHHhhhCCCCCEEEEecCCchhH--HHHHHHHHh
Q 020528 151 FENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTV--TGAGKYLKE 198 (325)
Q Consensus 151 ~~n~~~~~~g~~t~~~Ei~~ql~~~~D~iv~pvG~Gg~~--aGi~~~~k~ 198 (325)
..++ .-...+..|.++.+ +++.+++=++.|+.+ ..+..+++.
T Consensus 213 P~t~----~T~~~i~~~~~~~m--k~ga~lIN~aRg~~vd~~aL~~aL~~ 256 (333)
T PRK13243 213 PLTK----ETYHMINEERLKLM--KPTAILVNTARGKVVDTKALVKALKE 256 (333)
T ss_pred CCCh----HHhhccCHHHHhcC--CCCeEEEECcCchhcCHHHHHHHHHc
Confidence 2222 22344556788887 478899999999987 344555543
No 495
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=34.51 E-value=3.2e+02 Score=24.06 Aligned_cols=54 Identities=28% Similarity=0.426 Sum_probs=37.4
Q ss_pred HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 020528 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119 (325)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v 119 (325)
+.+.+.++...+|...+|..|.+++..++..|.++++..+ + .+...++.+|++-
T Consensus 138 ~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~---~-~~~~~~~~~g~~~ 191 (326)
T cd08272 138 DRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGARVYATAS---S-EKAAFARSLGADP 191 (326)
T ss_pred HhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEec---h-HHHHHHHHcCCCE
Confidence 4566667767777666788999999999999988665543 2 4555556666643
No 496
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=34.48 E-value=2.8e+02 Score=25.49 Aligned_cols=82 Identities=17% Similarity=0.118 Sum_probs=42.3
Q ss_pred EEEecCCChhHHHHHHHHH-HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHH-HhCCCeEEeC
Q 020528 72 VLIEPTSGNTGIGLAFMAA-AKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIR-DKTPNSYVLQ 149 (325)
Q Consensus 72 ~vv~~ssGN~g~alA~~a~-~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~ 149 (325)
.|+..+++..+..++..+- .-| -.|+++.-.-..-....+.+|++++.++-+.++.-..+...+.. .......++.
T Consensus 83 ~I~~t~G~~~~i~~~~~~~~~~g--d~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~~~~~~~~~v~l~ 160 (356)
T PRK04870 83 DVLLGNGSDELIQLLALACAKPG--ATVLAPEPGFVMYRMSAKLAGLEFVGVPLTADFTLDLPAMLAAIAEHRPALVFLA 160 (356)
T ss_pred cEEEcCCHHHHHHHHHHHhcCCC--CEEEECCCCHHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhhcCCCCEEEEc
Confidence 4665666666665554432 223 23445543444556678899999999975322211122222222 2233566665
Q ss_pred CCCCCc
Q 020528 150 QFENPA 155 (325)
Q Consensus 150 ~~~n~~ 155 (325)
..+||.
T Consensus 161 ~p~NPt 166 (356)
T PRK04870 161 YPNNPT 166 (356)
T ss_pred CCCCCC
Confidence 445553
No 497
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=34.41 E-value=1.7e+02 Score=20.89 Aligned_cols=44 Identities=30% Similarity=0.314 Sum_probs=31.2
Q ss_pred cCCChhHHHHHHHHHHcC---CeEEEEecCCCCHHHHHHH-HHcCCEEEE
Q 020528 76 PTSGNTGIGLAFMAAAKG---YRLIITMPASMSLERRMVL-LAFGAELVL 121 (325)
Q Consensus 76 ~ssGN~g~alA~~a~~~g---~~~~i~~p~~~~~~~~~~~-~~~Ga~v~~ 121 (325)
-++||.|.+++......| .++.++..+ ++.+.+.+ +.++.++..
T Consensus 5 IG~G~mg~al~~~l~~~g~~~~~v~~~~~r--~~~~~~~~~~~~~~~~~~ 52 (96)
T PF03807_consen 5 IGAGNMGSALARGLLASGIKPHEVIIVSSR--SPEKAAELAKEYGVQATA 52 (96)
T ss_dssp ESTSHHHHHHHHHHHHTTS-GGEEEEEEES--SHHHHHHHHHHCTTEEES
T ss_pred ECCCHHHHHHHHHHHHCCCCceeEEeeccC--cHHHHHHHHHhhcccccc
Confidence 488999999999999999 666655443 35555444 677766544
No 498
>PRK08013 oxidoreductase; Provisional
Probab=34.20 E-value=98 Score=29.21 Aligned_cols=31 Identities=16% Similarity=0.255 Sum_probs=27.1
Q ss_pred EEEecCCChhHHHHHHHHHHcCCeEEEEecC
Q 020528 72 VLIEPTSGNTGIGLAFMAAAKGYRLIITMPA 102 (325)
Q Consensus 72 ~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~ 102 (325)
.|+..++|-.|.++|...++.|++++++=..
T Consensus 5 dV~IvGaGpaGl~~A~~La~~G~~v~viE~~ 35 (400)
T PRK08013 5 DVVIAGGGMVGLAVACGLQGSGLRVAVLEQR 35 (400)
T ss_pred CEEEECcCHHHHHHHHHHhhCCCEEEEEeCC
Confidence 4777899999999999999999999988643
No 499
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=34.12 E-value=3.5e+02 Score=24.29 Aligned_cols=54 Identities=26% Similarity=0.321 Sum_probs=35.6
Q ss_pred HhCCCCCCCeEEEecCCChhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 020528 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 118 (325)
Q Consensus 62 ~~g~~~~g~~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 118 (325)
+...+.++.+.+|. ++|..|.+++..|+.+|++.++++.. +..+...++.+|+.
T Consensus 153 ~~~~~~~g~~vlI~-g~g~vg~~~~~la~~~G~~~v~~~~~--~~~~~~~~~~~g~~ 206 (334)
T cd08234 153 DLLGIKPGDSVLVF-GAGPIGLLLAQLLKLNGASRVTVAEP--NEEKLELAKKLGAT 206 (334)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHhCCe
Confidence 44555667666666 46888999888999999874444332 34555666666664
No 500
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=34.10 E-value=3.1e+02 Score=23.63 Aligned_cols=31 Identities=19% Similarity=0.209 Sum_probs=26.2
Q ss_pred eEEEecCCChhHHHHHHHHHHcCCeEEEEec
Q 020528 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMP 101 (325)
Q Consensus 71 ~~vv~~ssGN~g~alA~~a~~~g~~~~i~~p 101 (325)
+.+|+.++|.-|.++|......|.+++++-.
T Consensus 4 ~ilItG~~~~IG~~la~~l~~~g~~vi~~~r 34 (259)
T PRK12384 4 VAVVIGGGQTLGAFLCHGLAEEGYRVAVADI 34 (259)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEEC
Confidence 6789999999999999998888998766643
Done!