RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 020528
(325 letters)
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Length = 322
Score = 628 bits (1622), Expect = 0.0
Identities = 258/317 (81%), Positives = 292/317 (92%)
Query: 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIR 67
IAKDVTELIG TPLVYLN + +GCV R+AAKLEMMEPCSSVKDRIG+SMI+DAE+KGLI+
Sbjct: 5 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIK 64
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 127
PGESVLIEPTSGNTG+GLAF AAAKGY+LIITMPASMS ERR++LLAFG ELVLTDPA+G
Sbjct: 65 PGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKG 124
Query: 128 MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGG 187
MKGA+ KAEEI KTPN Y+LQQFENPANPKIHYETTGPEIWKGTGGKID VSGIGTGG
Sbjct: 125 MKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGG 184
Query: 188 TVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETV 247
T+TGAGKYLKE N +KLYGVEPVESA+LSGGKPGPHKIQGIGAGFIP VL+V+L+DE V
Sbjct: 185 TITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDEVV 244
Query: 248 QISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLS 307
Q+SS+E+I+ A+ LALKEGLLVGISSGAA AAAI++A+RPENAGKL V +FPSFGERYLS
Sbjct: 245 QVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENAGKLFVAIFPSFGERYLS 304
Query: 308 SVLFESVKKEAESMVFE 324
+VLF++ +KEAE+M FE
Sbjct: 305 TVLFDATRKEAEAMTFE 321
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis,
assimilatory sulfate reduction, S plant inorganic sulfur
uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Length = 430
Score = 628 bits (1621), Expect = 0.0
Identities = 236/317 (74%), Positives = 278/317 (87%)
Query: 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIR 67
IA +V++LIGKTP+VYLN I GCVA IAAKLE+MEPC SVKDRIGYSM+ DAE+KG I
Sbjct: 113 IADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFIS 172
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 127
PG+SVL+EPTSGNTGIGLAF+AA++GYRLI+TMPASMS+ERR++L AFGAELVLTDPA+G
Sbjct: 173 PGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKG 232
Query: 128 MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGG 187
M GAVQKAEEI TP++Y+LQQF+NPANPKIHYETTGPEIW T GK+D V+GIGTGG
Sbjct: 233 MTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGIGTGG 292
Query: 188 TVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETV 247
T+TG G+++KE NP+ ++ GVEP ES +LSGGKPGPHKIQGIGAGFIP LD ++DE +
Sbjct: 293 TITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFIPKNLDQKIMDEVI 352
Query: 248 QISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLS 307
ISSEEAIETAK LALKEGL+VGISSGAA AAAI++AKRPENAGKLI VVFPSFGERYLS
Sbjct: 353 AISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRPENAGKLIAVVFPSFGERYLS 412
Query: 308 SVLFESVKKEAESMVFE 324
+ LF+S+++E E M E
Sbjct: 413 TPLFQSIREEVEKMQPE 429
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP
dependent enzyme, serine ACET transferase; HET: LLP;
1.68A {Leishmania donovani} PDB: 3t4p_A* 3spx_A* 4air_A*
Length = 334
Score = 620 bits (1602), Expect = 0.0
Identities = 158/319 (49%), Positives = 224/319 (70%), Gaps = 1/319 (0%)
Query: 3 EEKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEE 62
++ +A+ + +LIG+TP +YLN++ + A++ K+E P +SVKDR+G+++ AE+
Sbjct: 6 DKSKNVAQSIDQLIGQTPALYLNKL-NNTKAKVVLKMECENPMASVKDRLGFAIYDKAEK 64
Query: 63 KGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 122
+G + PG+S+++E +SGNTG+ LA + A +GY++IITMP SMSLERR +L FGAE++LT
Sbjct: 65 EGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILT 124
Query: 123 DPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSG 182
A GMKGAV A++I PN+ + QF N IH ETTGPEIW+ T +D ++G
Sbjct: 125 PAALGMKGAVAMAKKIVAANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDCFIAG 184
Query: 183 IGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNL 242
+GTGGT+TG + LK+ ++ VEP ES VLSGGKPGPHKIQGIG GF+P VLD +L
Sbjct: 185 VGTGGTLTGVARALKKMGSHARIVAVEPTESPVLSGGKPGPHKIQGIGPGFVPDVLDRSL 244
Query: 243 LDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFG 302
+DE + ++ ++AIETA L +G+ G S GA AA++IA+RPE GK IV V PSFG
Sbjct: 245 IDEVLCVAGDDAIETALKLTRSDGVFCGFSGGANVYAALKIAERPEMEGKTIVTVIPSFG 304
Query: 303 ERYLSSVLFESVKKEAESM 321
ERYLS+ L+ SV+ E S+
Sbjct: 305 ERYLSTTLYRSVRDEVSSL 323
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism,
cysteine biosynthesis, transferase; HET: LLP; 1.80A
{Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Length = 313
Score = 608 bits (1570), Expect = 0.0
Identities = 184/307 (59%), Positives = 234/307 (76%), Gaps = 1/307 (0%)
Query: 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIR 67
IA+D+T+LIG+TPLV L R+ DG VA I AKLE P +SVKDRIG +M+ AE+ GLI+
Sbjct: 6 IAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGLIK 65
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 127
P ++++EPTSGNTGI LA + AA+GYR ++TMP +MSLERRM+L A+GAEL+LT A G
Sbjct: 66 PD-TIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGADG 124
Query: 128 MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGG 187
M GA+ KAEE+ +V QQFENPANP IH TT E+W+ T GK+D +V+G+GTGG
Sbjct: 125 MSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGTGG 184
Query: 188 TVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETV 247
T+TG + +KE P + VEP S VLSGG+ GPH IQGIGAGF+P VLD +L+DE +
Sbjct: 185 TITGVAQVIKERKPSARFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDQDLVDEII 244
Query: 248 QISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLS 307
+ +E+A+ A+ LA +EGLLVGISSGAAT AA+Q+A+RPENAGKLIVVV P FGERYLS
Sbjct: 245 TVGNEDALNVARRLAREEGLLVGISSGAATVAALQVARRPENAGKLIVVVLPDFGERYLS 304
Query: 308 SVLFESV 314
+ LF V
Sbjct: 305 TPLFADV 311
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY
crystallography, sulfhydrylase; HET: LLP; 1.55A
{Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X*
3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Length = 316
Score = 584 bits (1509), Expect = 0.0
Identities = 165/316 (52%), Positives = 217/316 (68%), Gaps = 11/316 (3%)
Query: 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIR 67
I D + IG TPLV L G + K+E P SVK RIG +M+ AE+ G +
Sbjct: 3 IYADNSYSIGNTPLVRLKHF--GHNGNVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTLT 60
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 127
G +++ TSGNTGI LA++AAA+GY++ +TMP +MSLER+ +L G LVLT+ A+G
Sbjct: 61 KG-KEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKG 119
Query: 128 MKGAVQKAEEIRDKTPNSYV-LQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTG 186
MKGA+ KAEEI P+ YV L+QFENPANP+IH ETTGPEIWK T GK+D +V+G+GTG
Sbjct: 120 MKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGTG 179
Query: 187 GTVTGAGKYLK-EHNPEIKLYGVEPVESAVLSGG------KPGPHKIQGIGAGFIPGVLD 239
G++TG + +K + +I VEPVES V+S KPGPHKIQGIGAGFIP LD
Sbjct: 180 GSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGEEVKPGPHKIQGIGAGFIPKNLD 239
Query: 240 VNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFP 299
++++D + S+ A+ TA+ L +EG+L GISSGAA AAA ++AK PE A KLIVV+ P
Sbjct: 240 LSIIDRVETVDSDTALATARRLMAEEGILAGISSGAAVAAADRLAKLPEFADKLIVVILP 299
Query: 300 SFGERYLSSVLFESVK 315
S ERYLS+ LFE ++
Sbjct: 300 SASERYLSTALFEGIE 315
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba
histolytica} PDB: 3bm5_A*
Length = 343
Score = 584 bits (1507), Expect = 0.0
Identities = 142/326 (43%), Positives = 206/326 (63%), Gaps = 8/326 (2%)
Query: 1 MVEEKSVIAKDVTELIGKTPLVYLNRIVDGCV----ARIAAKLEMMEPCSSVKDRIGYSM 56
+ + I ++ E IG TPLV L+ + + RI KLE P SSVKDR+G+++
Sbjct: 6 ISSPRKRIYHNILETIGGTPLVELHGVTEHPRIKKGTRILVKLEYFNPMSSVKDRVGFNI 65
Query: 57 IADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFG 116
+ A + G ++PG +IE TSGNTGI L A GYR+ I MP++MS+ER+M++ AFG
Sbjct: 66 VYQAIKDGRLKPG-MEIIESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFG 124
Query: 117 AELVLTDPARGMKGAVQKAEEIRDKTPNSYV-LQQFENPANPKIHYETTGPEIWKGTGGK 175
AEL+LT+ +GM GA+++ ++ + P Y QF NP N H+ T EIW+ T G+
Sbjct: 125 AELILTEGKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHH-YTANEIWEDTDGE 183
Query: 176 IDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIP 235
+D +VS +GT GTV G + LKE IK+ VEP ESAVL G GPH IQGIGAGFIP
Sbjct: 184 VDIVVSAVGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKGPHGIQGIGAGFIP 243
Query: 236 GVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIV 295
+ +DE + I +++A + A+ + +G++ G+SSGAA A ++ A++PEN GK IV
Sbjct: 244 DIYKKEFVDEIIPIKTQDAWKMARAVVKYDGIMCGMSSGAAILAGLKEAEKPENEGKTIV 303
Query: 296 VVFPSFGERYLSSVLFESVKKEAESM 321
++ PS GERYLS+ L++ +K E +
Sbjct: 304 IIVPSCGERYLSTDLYK-IKDEGTKI 328
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural
genomics/proteomics initi RSGI, structural genomics;
HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1
PDB: 2eco_A* 2ecq_A* 2efy_A*
Length = 304
Score = 581 bits (1500), Expect = 0.0
Identities = 157/302 (51%), Positives = 211/302 (69%), Gaps = 3/302 (0%)
Query: 12 VTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPG-E 70
V IGKTP+V L ++V+ +A + KLE + P S+KDR + MI DAEE+G++RPG
Sbjct: 3 VEGAIGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSG 62
Query: 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKG 130
V++EPTSGNTGIGLA +AA++GYRLI+TMPA MS ER+ VL AFGAELVLTDP R M
Sbjct: 63 QVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLA 122
Query: 131 AVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVT 190
A ++A ++ + +++ QF+NPAN + HYETTGPE+++ G+IDA V G GTGGT+T
Sbjct: 123 AREEALRLK-EELGAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTIT 181
Query: 191 GAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQIS 250
G G+YLKE P +K+ VEP S VLSGGK G H QG+G GFIP LD++LLD +Q+
Sbjct: 182 GVGRYLKERIPHVKVIAVEPARSNVLSGGKMGQHGFQGMGPGFIPENLDLSLLDGVIQVW 241
Query: 251 SEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVL 310
E+A A+ LA +EGL +G+SSG AA+Q+A R GK + + P G +YLS+ L
Sbjct: 242 EEDAFPLARRLAREEGLFLGMSSGGIVWAALQVA-RELGPGKRVACISPDGGWKYLSTPL 300
Query: 311 FE 312
+
Sbjct: 301 YA 302
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics,
NPPSFA, NAT project on protein structural and functional
analyses; 1.90A {Geobacillus kaustophilus}
Length = 308
Score = 570 bits (1472), Expect = 0.0
Identities = 170/305 (55%), Positives = 223/305 (73%), Gaps = 3/305 (0%)
Query: 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIR 67
+TELIG TP V LNRIVD A + KLE M P SSVKDRI +MI AE+ G ++
Sbjct: 4 TVNSITELIGDTPAVKLNRIVDEDSADVYLKLEFMNPGSSVKDRIALAMIEAAEKAGKLK 63
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 127
PG ++EPTSGNTGIGLA +AAAKGY+ ++ MP +MSLERR +L A+GAELVLT A+G
Sbjct: 64 PG-DTIVEPTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGAQG 122
Query: 128 MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGG 187
M+GA+ KAEE+ + ++ QQF+N ANP+IH TTG EI + G ++DA V+G+GTGG
Sbjct: 123 MRGAIAKAEELV-REHGYFMPQQFKNEANPEIHRLTTGKEIVEQMGDQLDAFVAGVGTGG 181
Query: 188 TVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETV 247
T+TGAGK L+E P IK+Y VEP +S VLSGGKPGPHKIQGIGAGF+P +LD ++ D +
Sbjct: 182 TITGAGKVLREAYPNIKIYAVEPADSPVLSGGKPGPHKIQGIGAGFVPDILDTSIYDGVI 241
Query: 248 QISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLS 307
+++EEA A+ A +EG+L GISSGAA AA+++AK GK ++ + PS GERYLS
Sbjct: 242 TVTTEEAFAAARRAAREEGILGGISSGAAIHAALKVAKE-LGKGKKVLAIIPSNGERYLS 300
Query: 308 SVLFE 312
+ L++
Sbjct: 301 TPLYQ 305
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J
protein structure initiative, joint center for
structural G transferase; 1.80A {Thermotoga maritima}
SCOP: c.79.1.1 PDB: 3fca_A*
Length = 303
Score = 548 bits (1414), Expect = 0.0
Identities = 153/303 (50%), Positives = 202/303 (66%), Gaps = 10/303 (3%)
Query: 8 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIR 67
+ LIG TP+V L+ I +RI KLE P SVKDR MI DAE++GL++
Sbjct: 10 HHHMMERLIGSTPIVRLDSID----SRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLK 65
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARG 127
G ++EPTSGN GI +A + A +G+R+I+TMP +MS+ERR VL GAELVLT G
Sbjct: 66 NG---IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELG 122
Query: 128 MKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGG 187
MKGAV+KA EI + +++L QFENP N H TTGPEI K +IDA V+G+GTGG
Sbjct: 123 MKGAVEKALEIS-RETGAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGG 181
Query: 188 TVTGAGKYLKEH-NPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDET 246
T++G G+ LK +K+ VEP +S VLSGG+PG H IQGIGAGF+P +LD +++DE
Sbjct: 182 TISGVGRVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGIGAGFVPKILDRSVIDEV 241
Query: 247 VQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYL 306
+ + EEA E A+ LA KEGLLVGISSGA AAA+++A++ + +V V P ERYL
Sbjct: 242 ITVEDEEAYEMARYLAKKEGLLVGISSGANVAAALKVAQKLGPDAR-VVTVAPDHAERYL 300
Query: 307 SSV 309
S +
Sbjct: 301 SIL 303
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp
fold, amino-acid biosynthesis; HET: PLP; 1.53A
{Mycobacterium tuberculosis} PDB: 3fgp_A* 3dki_A*
3dwi_A*
Length = 325
Score = 522 bits (1346), Expect = 0.0
Identities = 115/324 (35%), Positives = 172/324 (53%), Gaps = 18/324 (5%)
Query: 8 IAKDVTELIGKTPLVYLNRIV-------DGCVARIAAKLEMMEPCSSVKDRIGYSMIADA 60
+ + +G TPLV L R+ DG R+ AKLE P S+KDR MI A
Sbjct: 5 RYDSLLQALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQA 64
Query: 61 EEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120
E GL+RPG + ++EPTSGNTGI LA A KGYRLI MP + S+ERR +L +GA+++
Sbjct: 65 EADGLLRPG-ATILEPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQII 123
Query: 121 LTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALV 180
+ G AV A+E+ P+ +L Q+ NPAN HY TGPE+ +I V
Sbjct: 124 FSAAEGGSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PEITHFV 182
Query: 181 SGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDV 240
+G+GT GT+ G G++L+EH +K+ EP G + ++ + GF+P + D
Sbjct: 183 AGLGTTGTLMGTGRFLREHVANVKIVAAEPRYG-------EGVYALRNMDEGFVPELYDP 235
Query: 241 NLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGK--LIVVVF 298
+L + + +A+ + L EG+ GIS+GA AA+ + AG+ I +V
Sbjct: 236 EILTARYSVGAVDAVRRTRELVHTEGIFAGISTGAVLHAALGVGAGALAAGERADIALVV 295
Query: 299 PSFGERYLSSVLFESVKKEAESMV 322
G +YLS+ + +AE+ +
Sbjct: 296 ADAGWKYLSTGAYAGSLDDAETAL 319
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis,
transferase, ENZ kinetics, enzymatic sythesis of novel
compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB:
2bhs_A* 2bht_A* 2jc3_A*
Length = 303
Score = 512 bits (1320), Expect = 0.0
Identities = 126/302 (41%), Positives = 186/302 (61%), Gaps = 11/302 (3%)
Query: 11 DVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGE 70
+ + IG TPLV L R+ + + KLE P SVKDR SMI +AE++G I+PG
Sbjct: 3 TLEQTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPG- 61
Query: 71 SVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKG 130
VLIE TSGNTGI LA +AA KGYR+ + MP +MS ERR + A+GAEL+L +GM+G
Sbjct: 62 DVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEG 121
Query: 131 AVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVT 190
A A E+ ++ +L QF NP NP HY TTGPEIW+ TGG+I VS +GT GT+T
Sbjct: 122 ARDLALEMANRGEG-KLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTIT 180
Query: 191 GAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQIS 250
G ++++E + + + G++P E + + G + P ++PG+ + +L+DE + I
Sbjct: 181 GVSRFMREQSKPVTIVGLQPEEGSSIPGIRRWPT-------EYLPGIFNASLVDEVLDIH 233
Query: 251 SEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYLSSVL 310
+A T + LA++EG+ G+SSG A A A+++A N ++V + G+RYLS+ +
Sbjct: 234 QRDAENTMRELAVREGIFCGVSSGGAVAGALRVAA--ANPDAVVVAIICDRGDRYLSTGV 291
Query: 311 FE 312
F
Sbjct: 292 FG 293
>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase;
HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1
Length = 389
Score = 476 bits (1226), Expect = e-170
Identities = 80/305 (26%), Positives = 137/305 (44%), Gaps = 17/305 (5%)
Query: 11 DVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCS-SVKDRIGYSMIADAEEKGLIRPG 69
D E TPLV + R+ KLE P S SVKDR +I+ + + G
Sbjct: 89 DFFERGKPTPLVRSRLQLPNG-VRVWLKLEWYNPFSLSVKDRPAVEIISRLSRR--VEKG 145
Query: 70 ESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMK 129
S++ + TS N G+ L+ +A GYR + +P + +++ GA++++ A
Sbjct: 146 -SLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAPSTV 204
Query: 130 GAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWK---GTGGKIDALVSGIGTG 186
+ + + K + QF N AN + H T EI+ G + + +GT
Sbjct: 205 HLLPRVMKDS-KNEGFVHVNQFYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTS 263
Query: 187 GTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDET 246
G ++ A YL+ +P I+ V+P + + G I+ + G + + +++
Sbjct: 264 GHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPG-------IRRVETGMLW-INMLDISYTL 315
Query: 247 VQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVVFPSFGERYL 306
+++ EEA+E +A +GL++G S GAA A + A + VVV P G +YL
Sbjct: 316 AEVTLEEAMEAVVEVARSDGLVIGPSGGAAVKALAKKAAEGDLEPGDYVVVVPDTGFKYL 375
Query: 307 SSVLF 311
S V
Sbjct: 376 SLVQN 380
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase;
HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB:
3pc2_A* 3pc4_A*
Length = 527
Score = 480 bits (1238), Expect = e-169
Identities = 123/315 (39%), Positives = 179/315 (56%), Gaps = 12/315 (3%)
Query: 8 IAKDVTELIGKTPLVYLNRIV--DGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGL 65
I ++ E+IG TPLV LN I DG + AK E + P SVKDRIGY M+ DAEE+GL
Sbjct: 50 ITPNILEVIGCTPLVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQDAEEQGL 109
Query: 66 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD-- 123
++PG +IEPTSGNTGIGLA A KGY+ II MP MS E+ L GA+++ T
Sbjct: 110 LKPG-YTIIEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPTE 168
Query: 124 -PARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSG 182
+G + A++++ +TPNS VL Q+ N NP HY+ T EI K+D +V
Sbjct: 169 AAYDSPEGLIYVAQQLQRETPNSIVLDQYRNAGNPLAHYDGTAAEILWQLDNKVDMIVVS 228
Query: 183 IGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV-----LSGGKPGPHKIQGIGAGFIPGV 237
GT GT++G G+ +KE P ++ GV+P S + L+ ++++GIG F P V
Sbjct: 229 AGTAGTISGIGRKIKEQVPSCQIVGVDPYGSILARPAELNKTDVQFYEVEGIGYDFPPTV 288
Query: 238 LDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVV 297
D ++D +I + ++ L +EGLL G SSG A AA++ A++ G+ VV+
Sbjct: 289 FDDTVVDVWTKIGDSDCFPMSRRLNAEEGLLCGGSSGGAMHAALEHARK-LKKGQRCVVI 347
Query: 298 FPSFGERYLSSVLFE 312
P Y++ + +
Sbjct: 348 LPDGIRNYMTKFVSD 362
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of
PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens}
SCOP: c.79.1.1 PDB: 1m54_A*
Length = 435
Score = 474 bits (1222), Expect = e-168
Identities = 128/315 (40%), Positives = 185/315 (58%), Gaps = 12/315 (3%)
Query: 8 IAKDVTELIGKTPLVYLNRIV--DGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGL 65
I D+ + IG TP+V +N+I G + AK E SVKDRI MI DAE G
Sbjct: 98 ILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGT 157
Query: 66 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTD-- 123
++PG +IEPTSGNTGIGLA AA +GYR II MP MS E+ VL A GAE+V T
Sbjct: 158 LKPG-DTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTN 216
Query: 124 -PARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSG 182
+ V A ++++ PNS++L Q+ N +NP HY+TT EI + GK+D LV+
Sbjct: 217 ARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVAS 276
Query: 183 IGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV-----LSGGKPGPHKIQGIGAGFIPGV 237
+GTGGT+TG + LKE P ++ GV+P S + L+ + ++++GIG FIP V
Sbjct: 277 VGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTTYEVEGIGYDFIPTV 336
Query: 238 LDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVVV 297
LD ++D+ + + EEA A++L +EGLL G S+G+ A A++ A+ + G+ VV+
Sbjct: 337 LDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKAAQELQ-EGQRCVVI 395
Query: 298 FPSFGERYLSSVLFE 312
P Y++ L +
Sbjct: 396 LPDSVRNYMTKFLSD 410
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate,
PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}
Length = 360
Score = 92.7 bits (231), Expect = 1e-21
Identities = 64/301 (21%), Positives = 108/301 (35%), Gaps = 33/301 (10%)
Query: 17 GKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEP 76
G TPL+ + I K+E + P S KDR + DA G ++
Sbjct: 37 GGTPLIAATNLSKQTGCTIHLKVEGLNPTGSFKDRGMTMAVTDALAHGQ-----RAVLCA 91
Query: 77 TSGNTGIGLAFMAAAKGYRLIITMPAS-MSLERRMVLLAFGAELVLTDPARGMKGAVQKA 135
++GNT A AA G + +P +++ + + GA+++ D ++ A
Sbjct: 92 STGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQIDGNFD--DCLELA 149
Query: 136 EEIRDKTPNSYVLQQFENPANPKIH--YETTGPEIWKGTGGKIDALVSGIGTGGTVTGAG 193
++ P ++ N NP +T EI G D +G G +T
Sbjct: 150 RKMAADFPTISLV----NSVNPVRIEGQKTAAFEIVDVLGTAPDVHALPVGNAGNITAYW 205
Query: 194 KYLKE--------HNPEIKLYGVEPVESAVLSGGKPGPHK---IQGIGAGFIP-GVLDVN 241
K E P ++ G + +A L G+P H I G V
Sbjct: 206 KGYTEYHQLGLIDKLP--RMLGTQAAGAAPLVLGEPVSHPETIATAIRIGSPASWTSAVE 263
Query: 242 LLDET----VQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE-NAGKLIVV 296
++ + S EE + L+A EG+ V +S A+ A ++ G +V
Sbjct: 264 AQQQSKGRFLAASDEEILAAYHLVARVEGVFVEPASAASIAGLLKAIDDGWVARGSTVVC 323
Query: 297 V 297
Sbjct: 324 T 324
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A
{Aquifex aeolicus}
Length = 352
Score = 88.5 bits (220), Expect = 4e-20
Identities = 66/303 (21%), Positives = 111/303 (36%), Gaps = 36/303 (11%)
Query: 17 GKTPLVYLNRIVD--GCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLI 74
G TPL+ + + G +I K E + P S KDR I+ A E G +I
Sbjct: 29 GNTPLIEADNLARAIGFKGKIYLKYEGLNPTGSFKDRGMTLAISKAVEAGK-----RAVI 83
Query: 75 EPTSGNTGIGLAFMAAAKGYRLIITMPASM-SLERRMVLLAFGAELVLTDPARGMKGAVQ 133
++GNT A AA G R + +P ++ + + +GA+++ A+
Sbjct: 84 CASTGNTSASAAAYAARAGLRAYVLLPKGAVAIGKLSQAMIYGAKVLAIQGTFD--DALN 141
Query: 134 KAEEIRDKTPNSYVLQQFENPANPKIH--YETTGPEIWKGTGGKIDALVSGIGTGGTVTG 191
+I + P V N NP +T EI G D +G G +T
Sbjct: 142 IVRKIGENFPVEIV-----NSVNPYRIEGQKTAAFEICDTLGEAPDYHFIPVGNAGNITA 196
Query: 192 AGKYLKE--------HNPEIKLYGVEPVESAVLSGGKPGPHK---IQGIGAGFIP-GVLD 239
K K P ++ G + +A + G P + I G
Sbjct: 197 YWKGFKIYYEEGKITKLP--RMMGWQAEGAAPIVKGYPIKNPQTIATAIKIGNPYSWKSA 254
Query: 240 VNLLDET----VQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE-NAGKLI 294
+ E+ +S E + KL+A EG+ +S A+ A I++ + G+++
Sbjct: 255 LKAAQESGGKIDAVSDSEILYAYKLIASTEGVFCEPASAASVAGLIKLVREGFFKGGEVV 314
Query: 295 VVV 297
Sbjct: 315 TCT 317
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus
thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A
Length = 351
Score = 87.3 bits (217), Expect = 1e-19
Identities = 67/303 (22%), Positives = 112/303 (36%), Gaps = 36/303 (11%)
Query: 17 GKTPLVYLN--RIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLI 74
G TPL+ L R+ AK E + P S KDR ++ A E G +
Sbjct: 27 GSTPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLAVSKAVEGGA-----QAVA 81
Query: 75 EPTSGNTGIGLAFMAAAKGYRLIITMPASM-SLERRMVLLAFGAELVLTDPARGMKGAVQ 133
++GNT A AA G I+ +PA +L + L GA +V + A++
Sbjct: 82 CASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVEGNFD--DALR 139
Query: 134 KAEEIRDKTPNSYVLQQFENPANPKIH--YETTGPEIWKGTGGKIDALVSGIGTGGTVTG 191
+++ + P + V N NP +T E+ G +G G +T
Sbjct: 140 LTQKLTEAFPVALV-----NSVNPHRLEGQKTLAFEVVDELGDAPHYHALPVGNAGNITA 194
Query: 192 AGKYLKE--------HNPEIKLYGVEPVESAVLSGGKP--GPHKI-QGIGAGFIP-GVLD 239
K P ++ G + +A L G+P P + I G
Sbjct: 195 HWMGYKAYHALGKAKRLP--RMLGFQAAGAAPLVLGRPVERPETLATAIRIGNPASWQGA 252
Query: 240 VNLLDET----VQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE-NAGKLI 294
V +E+ ++ EE + + LA +EG+ +S AA A ++ + +
Sbjct: 253 VRAKEESGGVIEAVTDEEILFAYRYLAREEGIFCEPASAAAMAGVFKLLREGRLEPESTV 312
Query: 295 VVV 297
V+
Sbjct: 313 VLT 315
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme,
S-adenosyl-methionine, allostery; 2.25A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A*
Length = 486
Score = 86.8 bits (215), Expect = 3e-19
Identities = 58/340 (17%), Positives = 114/340 (33%), Gaps = 46/340 (13%)
Query: 17 GKTPLVYLNRIVD--GCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLI 74
G + L + R + + K + S KD +++ ++ +
Sbjct: 129 GNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVG 188
Query: 75 EPTSGNTGIGLAFMAAAKGYRLIITMPA-SMSLERRMVLLAFGAELVLTDPARGMKGAVQ 133
++G+T L+ A+ G I+ +PA +S+ + + +A GA ++ D G ++
Sbjct: 189 CASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDTDFD--GCMK 246
Query: 134 KAEEIRDKTPNSYVLQQFENPANPKIH--YETTGPEIWKGTGGKI-DALVSGIGTGGTVT 190
EI + P N N +T EI + ++ D ++ G G +
Sbjct: 247 LIREITAELPIYLA-----NSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIY 301
Query: 191 GAGKYLK--------EHNPEIKLYGVE-----PVESAVLSGGK-----PGPHKI-QGIGA 231
K K + P ++ + P+ SG K I
Sbjct: 302 AFYKGFKXCQELGLVDRIP--RMVCAQAANANPLYLHYKSGWKDFKPMTASTTFASAIQI 359
Query: 232 GFIP-GVLDVNLLDET---VQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRP 287
G V L + V+ ++EE + A A G+ + +G A A ++ +
Sbjct: 360 GDPVSIDRAVYALKKCNGIVEEATEEELMDAMAQADSTGMFICPHTGVALTALFKLRNQG 419
Query: 288 E-NAGKLIVVV-------FPSFGERYLSSVLFESVKKEAE 319
VVV F Y S+ + + + +
Sbjct: 420 VIAPTDRTVVVSTAHGLKFTQSKIDYHSNAIPDMACRFSN 459
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P
5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli}
PDB: 3ss9_X* 3r0x_A* 3r0z_A
Length = 442
Score = 82.1 bits (203), Expect = 1e-17
Identities = 54/288 (18%), Positives = 93/288 (32%), Gaps = 42/288 (14%)
Query: 32 VARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAA 91
V A KL + ++ D YS + E K + + ++GN G+ + M+A
Sbjct: 126 VLAHAEKLALEAGLLTLDD--DYSKLLSPEFKQFF--SQYSIAVGSTGNLGLSIGIMSAR 181
Query: 92 KGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKG----AVQKAEEIRDKTPNSYV 147
G+++ + M A ++ L + G +V + AV++ + PN
Sbjct: 182 IGFKVTVHMSADARAWKKAKLRSHGVTVVEYE------QDYGVAVEEGRKAAQSDPN-CF 234
Query: 148 LQQFENPANPKIHYETTGPEI--------WKGTGGKIDALVSGIGTGGTVTGAGKYLKEH 199
EN + Y G + + G GG G LK
Sbjct: 235 FIDDENSRTLFLGYSVAGQRLKAQFAQQGRIVDADNPLFVYLPCGVGGGPGGVAFGLKLA 294
Query: 200 -NPEIKLYGVEPVESAV----LSGGKPGPHKIQGIG--------------AGFIPGVLDV 240
+ + EP S + G +Q IG A G
Sbjct: 295 FGDHVHCFFAEPTHSPCMLLGVHTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAME 354
Query: 241 NLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE 288
LLD +S + + LA +EG+ + S+ A A ++
Sbjct: 355 RLLDGFYTLSDQTMYDMLGWLAQEEGIRLEPSALAGMAGPQRVCASVS 402
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme,
tryptophan synthase beta like PLP-dependent enzymes
superfamily; HET: IT1; 2.00A {Escherichia coli} PDB:
4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*
Length = 398
Score = 76.4 bits (188), Expect = 1e-15
Identities = 61/320 (19%), Positives = 97/320 (30%), Gaps = 48/320 (15%)
Query: 18 KTPLVYLNRIVDGC-VARIAAKLEMM--------------EPCSSVKDRIGYSMIADAEE 62
TPL L+ + + V +I K E + ++ + + E
Sbjct: 44 PTPLCALDDLANLFGVKKILVKDESKRFGLNAFXMLGGAYAIAQLLCEKYHLDIETLSFE 103
Query: 63 KGLIRPGESV-LIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121
GE + T GN G G+A+ A G +I MP + ER +L GAE ++
Sbjct: 104 HLKNAIGEKMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIV 163
Query: 122 TDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIH------YETTGPEIW---KGT 172
TD V+ + + V+Q KI Y T E +
Sbjct: 164 TD--MNYDDTVRLTMQHAQQH-GWEVVQDTAWEGYTKIPTWIMQGYATLADEAVEQMREM 220
Query: 173 GGKIDALVSGIGTGGTVTGAGKYLKEH--NPEIKLYGVEPVESAV----LSGGKPGPHKI 226
G ++ G G G YL + + VEP ++ G
Sbjct: 221 GVTPTHVLLQAGVGAMAGGVLGYLVDVYSPQNLHSIIVEPDKADCIYRSGVKGDIVNVGG 280
Query: 227 Q------GIGAGFIPGVL--DV--NLLDETVQISSEEAIETAKLLALKEGLLVGIS---S 273
G+ G P L ++ N + + A ++L G I S
Sbjct: 281 DMATIMAGLACG-EPNPLGWEILRNCATQFISCQDSVAALGMRVLGNPYGNDPRIISGES 339
Query: 274 GAATAAAIQIAKRPENAGKL 293
GA + L
Sbjct: 340 GAVGLGVLAAVHYHPQRQSL 359
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP:
c.79.1.1 PDB: 1pwh_A* 1pwe_A*
Length = 372
Score = 70.4 bits (173), Expect = 8e-14
Identities = 59/318 (18%), Positives = 110/318 (34%), Gaps = 46/318 (14%)
Query: 2 VEEKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAE 61
+ S L KTP+ + + K++ +P S K R
Sbjct: 30 MGRGSEFMMSGEPLHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWA 89
Query: 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121
++G + ++GN G+ A+ A G I +P + L GA +
Sbjct: 90 KQGCAH-----FVCSSAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCKV 144
Query: 122 TDPARGMKG-----AVQKAEEIRDKTPNSYVLQQFENP------ANPKIHYETTGPEIWK 170
G A + A+ + P + F++P A + E+ +
Sbjct: 145 V-------GELLDEAFELAKALAKNNPGWVYIPPFDDPLIWEGHA-------SIVKELKE 190
Query: 171 GTGGKIDALVSGIGTGGTVTGAGKYLKEHN-PEIKLYGVEPVESAV----LSGGK----P 221
K A+ +G GG + G + L+E ++ + +E + + GK P
Sbjct: 191 TLWEKPGAIALSVGGGGLLCGVVQGLQECGWGDVPVIAMETFGAHSFHAATTAGKLVSLP 250
Query: 222 GPHKI-QGIGAGFIPGVLDVNL----LDETVQISSEEAIETAKLLALKEGLLVGISSGAA 276
+ + +G G + L + IS +EA+ + E +LV + GAA
Sbjct: 251 KITSVAKALGVK-TVGSQALKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILVEPACGAA 309
Query: 277 TAAAIQ-IAKRPENAGKL 293
AA + ++ + G L
Sbjct: 310 LAAVYSHVIQKLQLEGNL 327
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III;
dimer, PLP, isomerase; HET: PLP; 1.70A
{Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A*
2zpu_A* 2zr8_A*
Length = 323
Score = 69.8 bits (172), Expect = 9e-14
Identities = 59/308 (19%), Positives = 115/308 (37%), Gaps = 51/308 (16%)
Query: 16 IGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIA--DAEEKGLIRPGESVL 73
KTP++ + + VA + K E + + K R + ++ + ++ + G +
Sbjct: 24 ANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLNEAQR---KAG---V 77
Query: 74 IEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQ 133
+ +SGN +A A G I MP + +G ++++ D +
Sbjct: 78 LTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDRY--KDDREK 135
Query: 134 KAEEIRDKTPNSYVLQQFENPANPKIH-YE---------TTGPEIWKGTGGKIDALVSGI 183
A+EI ++ + I Y+ T E+++ G +DAL +
Sbjct: 136 MAKEISERE--GLTI----------IPPYDHPHVLAGQGTAAKELFEEVGP-LDALFVCL 182
Query: 184 GTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV----LSGGKPGPHKIQ-----GIGAGFI 234
G GG ++G+ + P ++YGVEP G G
Sbjct: 183 GGGGLLSGSALAARHFAPNCEVYGVEPEAGNDGQQSFRKGSIVHIDTPKTIADGAQTQ-H 241
Query: 235 PGVL--DVN--LLDETVQISSEEAIETAKLLALKEGLLV-GISSGAATAAAIQIAKRPEN 289
G + +D+ + +S EE I+ K A + ++V +G + AA A + +
Sbjct: 242 LGNYTFSIIKEKVDDILTVSDEELIDCLKFYAARMKIVVEP--TGCLSFAAA-RAMKEKL 298
Query: 290 AGKLIVVV 297
K I ++
Sbjct: 299 KNKRIGII 306
>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative,
RSGI, structural genomics, lyase; HET: PLP; 2.15A
{Thermus thermophilus} SCOP: c.79.1.1
Length = 311
Score = 68.7 bits (169), Expect = 2e-13
Identities = 67/323 (20%), Positives = 122/323 (37%), Gaps = 66/323 (20%)
Query: 9 AKDVTELIGKTPLVY---LNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAE-EKG 64
+ + +TPL+ L+ ++ R+ K E ++ S K R S E KG
Sbjct: 11 FRRIAPYTHRTPLLTSRLLDGLLG---KRLLLKAEHLQKTGSFKARGALSKALALENPKG 67
Query: 65 LIRPGESVLIEPT--SGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLT 122
L+ SGN G+A+ A G + ++ MP S ++ A+GAE+V
Sbjct: 68 LL----------AVSSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVDR 117
Query: 123 DPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIH-YE---------TTGPEIW--- 169
K + A ++++T Y L IH ++ T G E+
Sbjct: 118 GVTA--KNREEVARALQEET--GYAL----------IHPFDDPLVIAGQGTAGLELLAQA 163
Query: 170 KGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV----LSGGKPGPHK 225
G A+++ +G GG + G +K +P + GVEP + L G+ +
Sbjct: 164 GRMGVFPGAVLAPVGGGGLLAGLATAVKALSPTTLVLGVEPEAADDAKRSLEAGRILRLE 223
Query: 226 IQ------GIGAGFIPGVL--DVN--LLDETVQISSEEAIETAKLLALKEGLLV-GISSG 274
G+ G + +D + +S E +E +LL + +V +G
Sbjct: 224 APPRTRADGVRTL-SLGERTFPILRERVDGILTVSEEALLEAERLLFTRTKQVVEP--TG 280
Query: 275 AATAAAIQIAKRPENAGKLIVVV 297
A AA + + + + ++
Sbjct: 281 ALPLAA--VLEHGARLPQTLALL 301
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP;
1.50A {Homo sapiens} PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Length = 346
Score = 66.8 bits (164), Expect = 1e-12
Identities = 64/310 (20%), Positives = 126/310 (40%), Gaps = 49/310 (15%)
Query: 16 IGKTPLVY---LNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESV 72
I TP++ LN++ + K E+ + S K R + + L R ++V
Sbjct: 23 IHLTPVLTSSILNQLTG---RNLFFKCELFQKTGSFKIRGALNAVRSLVPDALERKPKAV 79
Query: 73 LIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAV 132
+ +SGN G L + A +G I +P + +++ + A+GA +V +P+ +
Sbjct: 80 -VTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPS--DESRE 136
Query: 133 QKAEEIRDKTPNSYVLQQFENPANPKIH-YE---------TTGPEIWKGTGGKIDALVSG 182
A+ + ++T ++ +H + T E+ +DALV
Sbjct: 137 NVAKRVTEET--EGIM----------VHPNQEPAVIAGQGTIALEVLNQVPL-VDALVVP 183
Query: 183 IGTGGTVTGAGKYLKEHNPEIKLYGVEP--VESAVLS--GGKPGPHKIQ------GIGAG 232
+G GG + G +K P +K+Y EP + S GK P+ G+ +
Sbjct: 184 VGGGGMLAGIAITVKALKPSVKVYAAEPSNADDCYQSKLKGKLMPNLYPPETIADGVKSS 243
Query: 233 FIPGVL--DVN--LLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPE 288
G+ + L+D+ ++ +E +L+ + LL+ ++G AA + +
Sbjct: 244 --IGLNTWPIIRDLVDDIFTVTEDEIKCATQLVWERMKLLIEPTAGVGVAAVLSQHFQTV 301
Query: 289 NA-GKLIVVV 297
+ K I +V
Sbjct: 302 SPEVKNICIV 311
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human
cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo
sapiens}
Length = 318
Score = 66.4 bits (163), Expect = 1e-12
Identities = 63/315 (20%), Positives = 103/315 (32%), Gaps = 53/315 (16%)
Query: 15 LIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLI 74
TPL+ + + K E ++P S K R + +KG L+
Sbjct: 4 FHVVTPLLESWALSQVAGMPVFLKCENVQPSGSFKIRGIGHFCQEMAKKGCRH-----LV 58
Query: 75 EPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKG---- 130
+ GN GI A+ A G I +P S SL+ L GAE+ LT G
Sbjct: 59 CSSGGNAGIAAAYAARKLGIPATIVLPESTSLQVVQRLQGEGAEVQLT-------GKVWD 111
Query: 131 -AVQKAEEIRDKTPNSYVLQQFENPANPKIHYE------TTGPEIWKGTGGKIDALV-SG 182
A +A+E+ + V P H + E+ ALV +
Sbjct: 112 EANLRAQELAKRDGWENV--------PPFDHPLIWKGHASLVQELKAVLRTPPGALVLAV 163
Query: 183 IGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV----LSGGKPGPHKI-----QGIGAGF 233
G G L+ + + +E + ++ GK + +GA
Sbjct: 164 GGGGLLAGVVAGLLEVGWQHVPIIAMETHGAHCFNAAITAGKLVTLPDITSVAKSLGAK- 222
Query: 234 IPGVLDVNL----LDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAA-------IQ 282
+ + + EA+ + L E +LV + GAA AA +Q
Sbjct: 223 TVAARALECMQVCKIHSEVVEDTEAVSAVQQLLDDERMLVEPACGAALAAIYSGLLRRLQ 282
Query: 283 IAKRPENAGKLIVVV 297
+ +VV+
Sbjct: 283 AEGCLPPSLTSVVVI 297
>2gn0_A Threonine dehydratase catabolic; TDCB, biodegradative threonine
deaminase, PLP, threonine DEH L-threonine metabolism;
HET: LLP; 1.70A {Salmonella typhimurium} PDB: 2gn1_A*
2gn2_A*
Length = 342
Score = 66.4 bits (163), Expect = 1e-12
Identities = 67/314 (21%), Positives = 116/314 (36%), Gaps = 47/314 (14%)
Query: 9 AKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIA--DAEEKGLI 66
K + I KT + N + C I K E M+ S K R ++ ++ EK
Sbjct: 31 KKRLAGKIYKTGMPRSNYFSERCKGEIFLKFENMQRTGSFKIRGAFNKLSSLTEAEK--- 87
Query: 67 RPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPAR 126
R G ++ ++GN G++ A G + MP + + AE+VL
Sbjct: 88 RKG---VVACSAGNHAQGVSLSCAMLGIDGKVVMPKGAPKSKVAATCDYSAEVVLHG--D 142
Query: 127 GMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIH-YE---------TTGPEIWKGTGGKI 176
+ K EI + + I Y+ T G EI + +
Sbjct: 143 NFNDTIAKVSEIVETE--GRIF----------IPPYDDPKVIAGQGTIGLEIMEDLY-DV 189
Query: 177 DALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV----LSGGKPGPHKIQGIGA- 231
D ++ IG GG + G +K NP IK+ GV+ G+ H+ G A
Sbjct: 190 DNVIVPIGGGGLIAGIAIAIKSINPTIKVIGVQAENVHGMAASYYTGEITTHRTTGTLAD 249
Query: 232 -------GFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIA 284
G + + L+D+ V + SE+ I + + ++ ++ +GA AA+
Sbjct: 250 GCDVSRPGNLTYEIVRELVDDIVLV-SEDEIRNSMIALIQRNKVITEGAGALACAALLSG 308
Query: 285 KRPEN-AGKLIVVV 297
K + + V +
Sbjct: 309 KLDSHIQNRKTVSI 322
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer,
regulation, pyridoxal PHOS isoleucine biosynthesis; HET:
PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2
d.58.18.2
Length = 514
Score = 65.7 bits (161), Expect = 4e-12
Identities = 73/325 (22%), Positives = 121/325 (37%), Gaps = 61/325 (18%)
Query: 5 KSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIA--DAEE 62
++V+ V E TPL + ++ I K E +P S K R Y+M+A E+
Sbjct: 18 RAVLRAPVYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQ 77
Query: 63 --KGLIRPGESVLIEPTS--GNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 118
G+I T+ GN G+AF +A G + +I MP + + + + FG E
Sbjct: 78 KAHGVI----------TASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGE 127
Query: 119 LVLTDPARGMKG-----AVQKAEEIRDKTPNSYVLQQFENPANPKIHYE------TTGPE 167
++L G A KA E+ + ++V P H T E
Sbjct: 128 VLLH-------GANFDEAKAKAIELSQQQGFTWV--------PPFDHPMVIAGQGTLALE 172
Query: 168 IWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV----LSGGKPGP 223
+ + +D + +G GG G +K+ P+IK+ VE +SA L G P
Sbjct: 173 LLQQDA-HLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSACLKAALDAGH--P 229
Query: 224 HKIQGIGAGFIPGV---------LDV--NLLDETVQISSEEAIETAKLLALKEGLLVGIS 272
+ +G F GV + LD+ + + S+ K L + S
Sbjct: 230 VDLPRVGL-FAEGVAVKRIGDETFRLCQEYLDDIITVDSDAICAAMKDLFEDVRAVAEPS 288
Query: 273 SGAATAAAIQIAKRPENAGKLIVVV 297
A A + G+ + +
Sbjct: 289 GALALAGMKKYIALHNIRGERLAHI 313
>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis,
defensive PROT jasmonic acid pathway, jasmonic
acid,structural genomics; HET: LLP 15P; 2.35A {Solanum
lycopersicum}
Length = 366
Score = 63.4 bits (155), Expect = 2e-11
Identities = 70/324 (21%), Positives = 117/324 (36%), Gaps = 59/324 (18%)
Query: 5 KSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIA--DAEE 62
++A V ++ ++PL ++ D K E + S K R Y+M++ EE
Sbjct: 47 VDILASPVYDVAIESPLELAEKLSDRLGVNFYIKREDKQRVFSFKLRGAYNMMSNLSREE 106
Query: 63 --KGLIRPGESVLIEPTS--GNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAE 118
KG+I T+ GN G+A I MP + + + A G +
Sbjct: 107 LDKGVI----------TASAGNHAQGVALAGQRLNCVAKIVMPTTTPQIKIDAVRALGGD 156
Query: 119 LVLT----DPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYE------TTGPEI 168
+VL D A+ A E+ +K Y+ F++P T G EI
Sbjct: 157 VVLYGKTFDEAQ------THALELSEKDGLKYI-PPFDDP-------GVIKGQGTIGTEI 202
Query: 169 WKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAV----LSGGKPGPH 224
+ I A+ +G GG + G + K+ P K+ GVEP +A L G
Sbjct: 203 NRQLK-DIHAVFIPVGGGGLIAGVATFFKQIAPNTKIIGVEPYGAASMTLSLHEGHRVKL 261
Query: 225 KIQGIGAGFIPGV-----------LDVNLLDETVQISSEEAIETAKLLALKEGLLVGISS 273
F GV L+D V ++++ K + + ++ S
Sbjct: 262 SNVDT---FADGVAVALVGEYTFAKCQELIDGMVLVANDGISAAIKDVYDEGRNILETSG 318
Query: 274 GAATAAAIQIAKRPENAGKLIVVV 297
A A A + + + IV +
Sbjct: 319 AVAIAGAAAYCEFYKIKNENIVAI 342
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase;
substrate, PLP, crystal, complex, hydrolase; HET: PLP;
1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A*
1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A*
Length = 338
Score = 48.3 bits (115), Expect = 1e-06
Identities = 30/181 (16%), Positives = 53/181 (29%), Gaps = 23/181 (12%)
Query: 135 AEEIRDKTPNSYVL-QQFENPANPKIHY---ETTGPEIWKGTGGKIDALVSGIGTGGTVT 190
E +R Y + + + + G K D +V TG T
Sbjct: 145 LESVRAAGGKPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAELGFKFDYVVVCSVTGSTQA 204
Query: 191 GAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGI--------GAGFIPGVLDVNL 242
G ++ GV + +I I G DV L
Sbjct: 205 GMVVGFAADGRADRVIGV-----DASAKPAQTREQITRIARQTAEKVGLERDIMRADVVL 259
Query: 243 LDETVQ----ISSEEAIETAKLLALKEGLLVG-ISSGAATAAAIQIAKRPE-NAGKLIVV 296
+ + +E +E +L A EG+L + G + I++ + E G ++
Sbjct: 260 DERFAGPEYGLPNEGTLEAIRLCARTEGMLTDPVYEGKSMHGMIEMVRNGEFPEGSRVLY 319
Query: 297 V 297
Sbjct: 320 A 320
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.003
Identities = 30/191 (15%), Positives = 60/191 (31%), Gaps = 59/191 (30%)
Query: 52 IGYSMIADAEEKGLIRP---------GE-SVLIEPTSGNTGIGLAFMAAAK-----GYRL 96
+ + D + KGLI GE + L + + ++ + + G +
Sbjct: 1739 MEKAAFEDLKSKGLIPADATFAGHSLGEYAAL----ASLADV-MSIESLVEVVFYRGMTM 1793
Query: 97 IITMPASMSLERRMVLLAFGAELVLTDPARGMKG----AVQK-AEEIRDKTPNSYVLQQF 151
+ +P ++A +P R A+Q E + +T ++++
Sbjct: 1794 QVAVPRDELGRSNYGMIA-------INPGRVAASFSQEALQYVVERVGKRT--GWLVE-- 1842
Query: 152 ENPANPKIHYETTGPEIWKGTGGKIDALVSGIGTGGTVTGAGKYLKEHNPEIKL------ 205
N Y + G + AL TVT ++K I +
Sbjct: 1843 --IVN----YNVENQQY--VAAGDLRAL-------DTVTNVLNFIKLQK--IDIIELQKS 1885
Query: 206 YGVEPVESAVL 216
+E VE +
Sbjct: 1886 LSLEEVEGHLF 1896
Score = 37.3 bits (86), Expect = 0.007
Identities = 40/218 (18%), Positives = 65/218 (29%), Gaps = 84/218 (38%)
Query: 57 IADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLE------RRM 110
+ A+ G PGE L G TG + A I + S E R+
Sbjct: 250 VVTAKLLGF-TPGE--LRSYLKGATGHSQGLVTAV-----AIA--ETDSWESFFVSVRKA 299
Query: 111 VLLAF--GAELVLTDPARGMK-GAVQKAEEIRDKTPNSYVL-------QQFE------N- 153
+ + F G P + ++ + E + P S +L +Q + N
Sbjct: 300 ITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP-SPMLSISNLTQEQVQDYVNKTNS 358
Query: 154 --PANPKIHYETTGPEIWKGTGGKIDALVSG----IGTGGTVTGAGKYLKEHNPEIKLYG 207
PA ++ I +LV+G + V+G P+ LYG
Sbjct: 359 HLPAGKQVE-------I---------SLVNGAKNLV-----VSG--------PPQ-SLYG 388
Query: 208 VEPVESAVLSGGKPGPHKIQG----------IGAGFIP 235
+ + L K Q F+P
Sbjct: 389 L----NLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP 422
Score = 34.3 bits (78), Expect = 0.058
Identities = 34/164 (20%), Positives = 56/164 (34%), Gaps = 63/164 (38%)
Query: 192 AGKYLKEHNPEIKLYG------VE--PVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLL 243
A + K+ YG V PV + GG+ G + I + + + ++
Sbjct: 1649 ADNHFKDT------YGFSILDIVINNPVNLTIHFGGEKG----KRIRENYSAMIFE-TIV 1697
Query: 244 DETVQISS--EEAIETAKLLALK--EGLLVGISSGAATA-----------AAIQIAK--- 285
D ++ +E E + + +GLL +AT AA + K
Sbjct: 1698 DGKLKTEKIFKEINEHSTSYTFRSEKGLL------SATQFTQPALTLMEKAAFEDLKSKG 1751
Query: 286 -RPENAGKLIVVVFP--SFGERY--LSSVLFESVKKEAESMVFE 324
P +A F S GE Y L+S+ A+ M E
Sbjct: 1752 LIPADA------TFAGHSLGE-YAALASL--------ADVMSIE 1780
Score = 32.3 bits (73), Expect = 0.23
Identities = 47/264 (17%), Positives = 68/264 (25%), Gaps = 99/264 (37%)
Query: 117 AELVLTDPARGMKGAVQKAEEIRDKTPNSY------VLQQFENP--ANPKIH-------- 160
AELV + + G V + + + L +FEN IH
Sbjct: 58 AELV----GKFL-GYV--SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQ 110
Query: 161 ---------------Y----ETTGPEIWKGTGGKIDALVSGIGTGGTVT-----GAG--- 193
Y K + AL +G G G G
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKRPFDKKSN---SALFRAVGEGNAQLVAIFGGQGNTD 167
Query: 194 KYLKEHNPEIKLYG-----VEP-VESA--VLSGGKPGPHKIQGIGAGFIPGVLDV-NLLD 244
Y +E LY V ++ + LS + L++ L+
Sbjct: 168 DYFEEL---RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEK----VFTQGLNILEWLE 220
Query: 245 ETVQISSEEA-------------------IETAKLLALKEGLLVGISSGAA-------TA 278
++ + TAKLL G L GA TA
Sbjct: 221 NPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA 280
Query: 279 AAIQIAKRPE----NAGKLIVVVF 298
AI E + K I V+F
Sbjct: 281 VAIAETDSWESFFVSVRKAITVLF 304
Score = 29.6 bits (66), Expect = 1.7
Identities = 24/123 (19%), Positives = 41/123 (33%), Gaps = 36/123 (29%)
Query: 10 KDVTELI---GKT-----PLVYLNRIVDGCVA----RIAAKLEMMEPCSSVKDRIGYSMI 57
+ + E++ G T P L R G +A R+AA E V +R+
Sbjct: 1780 ESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQ-EALQYVVERV----- 1833
Query: 58 ADAEEKGLI-------RPGESVLIEPTSGNTGIGL-AFMAAAKGYRL----IITMPASMS 105
+ G + + + +G+ L +L II + S+S
Sbjct: 1834 --GKRTGWLVEIVNYNVENQQYVA---AGDL-RALDTVTNVLNFIKLQKIDIIELQKSLS 1887
Query: 106 LER 108
LE
Sbjct: 1888 LEE 1890
>1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase,
tryptophan biosynthesis, pyridoxal phosphate; HET: IPL
PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB:
1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B*
2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B*
1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ...
Length = 396
Score = 37.9 bits (89), Expect = 0.003
Identities = 32/130 (24%), Positives = 51/130 (39%), Gaps = 37/130 (28%)
Query: 201 PEIKLYGVEP----VES----AVLSGGKPG-------------------PHKIQGIGAGF 233
+ L GVEP +E+ A L G+ G + I AG
Sbjct: 247 TSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSIS---AGL 303
Query: 234 -IPGV------LDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKR 286
P V L+ + V I+ +EA+E K L EG++ + S A A A+++ +
Sbjct: 304 DFPSVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMRE 363
Query: 287 PENAGKLIVV 296
+L+VV
Sbjct: 364 QPEKEQLLVV 373
>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open
twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis
saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A*
Length = 341
Score = 37.4 bits (86), Expect = 0.005
Identities = 45/316 (14%), Positives = 87/316 (27%), Gaps = 47/316 (14%)
Query: 19 TPLVYLNRIVD--GCVARIAAK-LEMMEPC--SSVKDRIGYSMIADAEEKGLIRPGESVL 73
+P+ LNR+ G + AK + K R ++ D E + L
Sbjct: 16 SPISNLNRLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDY-----THL 70
Query: 74 IEPTSGNTGIGLAFMAAAKGYR----LIITMPASMSLERR-----------MVLLAFGAE 118
+ + A A LI + + ++
Sbjct: 71 VSIGGRQSNQTRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVR 130
Query: 119 LVLTDPARGMKGAVQK-AEEIRDKTPNSYVLQQ-FENPANPKIHY---ETTGPEIWKGTG 173
++ GM+ + +E+ D Y + + + G
Sbjct: 131 VIEDGFDIGMRKSFANALQELEDAGHKPYPIPAGCSEHKYGGLGFVGFADEVINQEVELG 190
Query: 174 GKIDALVSGIGTGGTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGI---- 229
K D +V TG T G + ++ + + + + + I
Sbjct: 191 IKFDKIVVCCVTGSTTAGILAGMAQYGRQDDVIAI-----DASFTSEKTKEQTLRIANNT 245
Query: 230 --GAGFIPGVLDVNLLDETVQ----ISSEEAIETAKLLALKEGLLV-GISSGAATAAAIQ 282
G D L + +E IE + A +EG+L + G + I
Sbjct: 246 AKLIGVEHEFKDFTLDTRFAYPCYGVPNEGTIEAIRTCAEQEGVLTDPVYEGKSMQGLIA 305
Query: 283 -IAKRPENAGKLIVVV 297
I + G ++ V
Sbjct: 306 LIKEDYFKPGANVLYV 321
>1x1q_A Tryptophan synthase beta chain; structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
2.50A {Thermus thermophilus}
Length = 418
Score = 36.0 bits (84), Expect = 0.013
Identities = 38/160 (23%), Positives = 60/160 (37%), Gaps = 39/160 (24%)
Query: 172 TGGKIDALVSGIGTGGTVTGA-GKYLKEHNPEIKLYGVEP----VES----AVLSGGKPG 222
G DAL++ +G G G + KL GVE + + A + GK G
Sbjct: 242 FGRLPDALIAAVGGGSNAIGLFAPFAYLPEGRPKLIGVEAAGEGLSTGRHAASIGAGKRG 301
Query: 223 -------------------PHKIQGIGAGF-IPGV------LDVNLLDETVQISSEEAIE 256
H + AG PGV + E ++ EEA+E
Sbjct: 302 VLHGSYMYLLYDHDGQITPAHSVS---AGLDYPGVGPEHSYYADAGVAEYASVTDEEALE 358
Query: 257 TAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVV 296
KLLA EG++ + S A A A ++ + +++V+
Sbjct: 359 GFKLLARLEGIIPALESAHAIAYAAKVVPE-MDKDQVVVI 397
>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural
genomics/proteomics initiative, structural genomics,
lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP:
c.79.1.1 PDB: 1wdw_B*
Length = 388
Score = 34.8 bits (81), Expect = 0.031
Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 41/160 (25%)
Query: 172 TGGKIDALVSGIGTGGTVTGA-GKYLKEHNPEIKLYGVEP----VES----AVLSGGKPG 222
G D +V+ +G G G ++ + ++KL GVE +ES A L+ G+ G
Sbjct: 215 EGQLPDVIVACVGGGSNAMGIFYPFVND--KKVKLVGVEAGGKGLESGKHSASLNAGQVG 272
Query: 223 -------------------PHKIQGIGAGF-IPGV------LDVNLLDETVQISSEEAIE 256
H I G PGV L E V ++ EEA++
Sbjct: 273 VFHGMLSYFLQDEEGQIKPTHSIA---PGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALK 329
Query: 257 TAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVV 296
L+ EG++ + S A A A+++AK + ++I+V
Sbjct: 330 AFHELSRTEGIIPALESAHAVAYAMKLAKEM-SRDEIIIV 368
>2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan
biosynthesis, structural genomics; 2.20A {Mycobacterium
tuberculosis} PDB: 2o2j_A
Length = 422
Score = 34.9 bits (81), Expect = 0.033
Identities = 42/160 (26%), Positives = 61/160 (38%), Gaps = 41/160 (25%)
Query: 172 TGGKIDALVSGIGTGGTVTGA-GKYLKEHNPEIKLYGVEP----VES----AVLSGGKPG 222
G DA+V+ +G G G +L + P ++L G E VE+ A + G PG
Sbjct: 246 AGRLPDAVVACVGGGSNAIGIFHAFLDD--PGVRLVGFEAAGDGVETGRHAATFTAGSPG 303
Query: 223 -------------------PHKIQGIGAGF-IPGV------LDVNLLDETVQISSEEAIE 256
H I AG PGV L + I+ EA++
Sbjct: 304 AFHGSFSYLLQDEDGQTIESHSIS---AGLDYPGVGPEHAWLKEAGRVDYRPITDSEAMD 360
Query: 257 TAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVV 296
LL EG++ I S A A A+++ G +IVV
Sbjct: 361 AFGLLCRMEGIIPAIESAHAVAGALKLGVE-LGRGAVIVV 399
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific]
1,mitochondrial; oxidoreductase, thioester reduction,
fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2
c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Length = 364
Score = 34.7 bits (80), Expect = 0.036
Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 4/79 (5%)
Query: 66 IRPGESVLIEPTSGNTGIGLAF--MAAAKGYRLI-ITMPASMSLERRMVLLAFGAELVLT 122
+ PG+ I+ G + +G + + I + E L GA V+T
Sbjct: 164 LTPGKDWFIQ-NGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVIT 222
Query: 123 DPARGMKGAVQKAEEIRDK 141
+ + +E +
Sbjct: 223 EDQNNSREFGPTIKEWIKQ 241
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase,
cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A
{Streptomyces SP} PDB: 4a10_A
Length = 447
Score = 34.0 bits (78), Expect = 0.067
Identities = 27/144 (18%), Positives = 48/144 (33%), Gaps = 13/144 (9%)
Query: 54 YSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLL 113
Y M+ + ++ G+ VLI SG G G + S ++ +
Sbjct: 207 YRMLVS-DRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAV---VSSAQKEAAVR 262
Query: 114 AFGAELVLTDPARGMKGAVQK-AEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWK-- 170
A G +LV+ G+ + + + L + P I +E TG +
Sbjct: 263 ALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTGRVTFGLS 322
Query: 171 ----GTGGKIDALVSGIGTGGTVT 190
GG + + G +G T
Sbjct: 323 VIVARRGGTV--VTCGSSSGYLHT 344
>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural
genomics, NPPSFA, natio project on protein structural
and functional analyses; 2.30A {Thermus thermophilus}
Length = 343
Score = 33.7 bits (78), Expect = 0.071
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 62 EKGLIRPGESVLIEPTSGNTGIGLA--FMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119
+K +RPG+ VL+ G+ +A +A G R+I T + S ++ A GA+
Sbjct: 160 DKLGVRPGDDVLVMAAGS--GVSVAAIQIAKLFGARVIAT---AGSEDKLRRAKALGADE 214
Query: 120 V 120
Sbjct: 215 T 215
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure
initiative, PSI-biolo YORK structural genomics research
consortium; 2.20A {Sinorhizobium meliloti 1021}
Length = 363
Score = 31.4 bits (72), Expect = 0.36
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELV 120
EKG +R G+ V+++ T G GL A A G +I+T S S E+ A GA+
Sbjct: 183 EKGHLRAGDRVVVQGTGGVALFGLQI-AKATGAEVIVT---SSSREKLDRAFALGADHG 237
>3krt_A Crotonyl COA reductase; structural genomics, protein structure
initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces
coelicolor} PDB: 3hzz_A
Length = 456
Score = 30.2 bits (68), Expect = 0.93
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 54 YSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLL 113
Y + G+ + G++VLI SG G A A G I S ++ +
Sbjct: 215 YRQLVSRNGAGM-KQGDNVLIWGASGGLGSYATQFALAGGANPICV---VSSPQKAEICR 270
Query: 114 AFGAELVL 121
A GAE ++
Sbjct: 271 AMGAEAII 278
>4eye_A Probable oxidoreductase; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.10A
{Mycobacterium abscessus}
Length = 342
Score = 29.5 bits (67), Expect = 1.7
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 62 EKGLIRPGESVLIEPTSGNTGIGLAF--MAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119
+G +R GE+VL+ +G GIG A +A G ++I + + + GA++
Sbjct: 153 RRGQLRAGETVLVLGAAG--GIGTAAIQIAKGMGAKVIAV--VN-RTAATEFVKSVGADI 207
Query: 120 VL 121
VL
Sbjct: 208 VL 209
>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase,
quinon reduction, structural genomics, structural
genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP:
b.35.1.2 c.2.1.1
Length = 351
Score = 29.1 bits (66), Expect = 1.8
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 62 EKGLIRPGESVLIEPTSGNTGIGLAF--MAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119
++ GESVL+ SG G+GLA +A A G +++ T A + E + ++L GA
Sbjct: 164 HSACVKAGESVLVHGASG--GVGLAACQIARAYGLKILGT--AG-TEEGQKIVLQNGAHE 218
Query: 120 VL 121
V
Sbjct: 219 VF 220
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 29.5 bits (66), Expect = 1.8
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAF 115
+G ++PGESVLI SG+ G+G A +A A + + +R + F
Sbjct: 1661 VRGRMQPGESVLIH--SGSGGVGQAAIAIALSRGCRVFTTVGSAEKRAYLQARF 1712
>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein
structure initiati structural genomics research
consortium, nysgrc; 2.45A {Rhizobium etli}
Length = 353
Score = 29.1 bits (66), Expect = 2.1
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 7/61 (11%)
Query: 62 EKGLIRPGESVLIEPTSGNTGIGLAF--MAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119
+ + GESVLI + GIG +A A G + T A S + GA+
Sbjct: 161 QMAGLTEGESVLIHGGTS--GIGTTAIQLARAFGAEVYAT--AG-STGKCEACERLGAKR 215
Query: 120 V 120
Sbjct: 216 G 216
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics,
metal-binding, oxidoreductase, PSI-2, protein structure
initiative; 2.09A {Thermotoga maritima}
Length = 404
Score = 29.3 bits (66), Expect = 2.1
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 16/75 (21%)
Query: 58 ADAEEKGLIRPGESVLIEPTSGNTG---IGLAFMAAAKGY---RLIITMPASMSLERRMV 111
A G IRPG++V+I G IGLA +A K ++I++ S RR +
Sbjct: 203 AVIVRGGGIRPGDNVVI------LGGGPIGLAAVAILKHAGASKVILS---EPSEVRRNL 253
Query: 112 LLAFGAELVLTDPAR 126
GA+ V+ DP +
Sbjct: 254 AKELGADHVI-DPTK 267
>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases,
QUIN oxidoreductase, oxidative stress response; HET:
NAP; 2.50A {Homo sapiens} PDB: 2oby_A*
Length = 354
Score = 29.1 bits (66), Expect = 2.2
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 7/61 (11%)
Query: 62 EKGLIRPGESVLIEPTSGNTGIGLAF--MAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119
G ++ G+ VLI G+G A + G ++T A S ++ + GA
Sbjct: 156 LVGNVQAGDYVLIHAGLS--GVGTAAIQLTRMAGAIPLVT--AG-SQKKLQMAEKLGAAA 210
Query: 120 V 120
Sbjct: 211 G 211
>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE NDP; 1.70A
{Ralstonia eutropha}
Length = 379
Score = 28.4 bits (63), Expect = 3.2
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 62 EKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121
E + +++ + N G L + G +L+ E+ +L A GA V
Sbjct: 165 ETMRLEGHSALVHTAAASNLGQMLNQICLKDGIKLVNI---VRKQEQADLLKAQGAVHVC 221
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 1iyz_A 2cf2_D
Length = 302
Score = 28.3 bits (64), Expect = 3.7
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 62 EKGLIRPGESVLIEPTSGNTGIGLAF--MAAAKGYRLIITMPASMSLERRMVLLAFGAEL 119
++ RPGE VL++ +G +G A +A A G R++ AS E+ + LA GAE
Sbjct: 119 KRAQARPGEKVLVQAAAG--ALGTAAVQVARAMGLRVLAA--AS-RPEKLALPLALGAEE 173
Query: 120 VL 121
Sbjct: 174 AA 175
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif,
gamma-N6M-adenosine methyltrans S-adenosyl-methionine
binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Length = 878
Score = 28.4 bits (62), Expect = 4.2
Identities = 3/26 (11%), Positives = 9/26 (34%), Gaps = 1/26 (3%)
Query: 184 GTGGTVTGAGKYLKEHNPEIKLYGVE 209
G+G + P +++ +
Sbjct: 331 GSGNLLATVSAGFNNVMPR-QIWAND 355
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate
aminotransferase; HET: PGU; 1.67A {Thermus thermophilus}
PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Length = 397
Score = 27.9 bits (63), Expect = 4.3
Identities = 15/82 (18%), Positives = 23/82 (28%), Gaps = 30/82 (36%)
Query: 63 KGLIRPGESVLIE-PT-------------------SGNTGI---GLAFMAAAKGYRLIIT 99
K + G VL+E P+ +G G L + + R +
Sbjct: 109 KVFLDEGSPVLLEAPSYMGAIQAFRLQGPRFLTVPAGEEGPDLDALEEVLKRERPRFLYL 168
Query: 100 MP-------ASMSLERRMVLLA 114
+P L R LL
Sbjct: 169 IPSFQNPTGGLTPLPARKRLLQ 190
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Length = 324
Score = 27.8 bits (62), Expect = 4.5
Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 16/79 (20%)
Query: 72 VLIEPTSGNTGIGLAF--MAAAKGYRLIITM--PASMSLERRMVLLAFGA---------E 118
+LI T ++G G A G+R+ +M + + F E
Sbjct: 8 ILI--TGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLE 65
Query: 119 LVLTDPARGMKGAVQKAEE 137
L + + A+ +
Sbjct: 66 LDVQSQVS-VDRAIDQIIG 83
>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP:
b.35.1.2 c.2.1.1
Length = 327
Score = 28.0 bits (63), Expect = 4.9
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 66 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121
I+P E L +G G+ A A G +LI T + ++ L GA V+
Sbjct: 138 IKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGT--VG-TAQKAQSALKAGAWQVI 190
>1wiw_A Glucose-6-phosphate isomerase like protein; riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.00A {Thermus thermophilus} SCOP: c.80.1.1
Length = 290
Score = 27.7 bits (61), Expect = 4.9
Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 3/67 (4%)
Query: 210 PVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGL-L 268
V PGPH G G G ++ L + + + +E L G+ L
Sbjct: 25 VGTGPVPGEAYPGPHAALGYGEGQFAA--LLSGLPDWGEEGTLFLLEGGYDLGEAAGMAL 82
Query: 269 VGISSGA 275
+ + A
Sbjct: 83 LAETGRA 89
>2qi9_A Vitamin B12 import system permease protein BTUC; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 4dbl_A 1l7v_A*
Length = 326
Score = 27.6 bits (62), Expect = 5.3
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 268 LVGISSGAATAAAIQI 283
L+G+S+GA +
Sbjct: 90 LLGVSNGAGVGLIAAV 105
>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics,
PSI, protein STRU initiative; 2.66A {Mycobacterium
tuberculosis} SCOP: c.2.1.1
Length = 198
Score = 27.2 bits (61), Expect = 5.7
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 66 IRPGESVLIEPTSGNTGIGLAFMAAAK--GYRLIITMPASMSLERRMVLLAFGAE 118
+ PGE VLI +G G+G+A ++ AK G R+ T A S +R +L G E
Sbjct: 36 LSPGERVLIHSATG--GVGMAAVSIAKMIGARIYTT--AG-SDAKREMLSRLGVE 85
>3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A,
alternative splicing, hydrolase, phosphoprotein, serine
esterase; 2.00A {Homo sapiens} PDB: 3c5w_P
Length = 316
Score = 27.5 bits (61), Expect = 6.4
Identities = 8/45 (17%), Positives = 15/45 (33%)
Query: 252 EEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPENAGKLIVV 296
+E +L+G S G A A + + L ++
Sbjct: 98 GNVVEAMYGDLPPPIMLIGHSMGGAIAVHTASSNLVPSLLGLCMI 142
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 6.7
Identities = 7/19 (36%), Positives = 10/19 (52%), Gaps = 3/19 (15%)
Query: 196 LKEHNPEIKLYGVEPVESA 214
LK+ +KLY +SA
Sbjct: 22 LKKLQASLKLY--AD-DSA 37
>2qmq_A Protein NDRG2, protein NDR2; alpha/beta-hydrolases fold, NDR
family, developmental protei differentiation,
neurogenesis, phosphorylation; HET: 2PE; 1.70A {Mus
musculus} PDB: 2xmq_A 2xmr_A 2xms_A
Length = 286
Score = 27.0 bits (59), Expect = 8.1
Identities = 9/67 (13%), Positives = 24/67 (35%), Gaps = 1/67 (1%)
Query: 230 GAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGAATAAAIQIAKRPEN 289
G V + ++ ++ + L + VG+ +GA + + P+
Sbjct: 77 GMEEGAPVFPLGYQYPSLDQLADMIPCILQYLNFSTIIGVGVGAGAYILSRYAL-NHPDT 135
Query: 290 AGKLIVV 296
L+++
Sbjct: 136 VEGLVLI 142
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel
inter domain, chaperone; 3.94A {Mycobacterium
tuberculosis} PDB: 3m9d_A
Length = 251
Score = 27.1 bits (59), Expect = 8.6
Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 32 VARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSG 79
V +A L + + + + D +RPG+S+L++ +G
Sbjct: 185 VVWLADPLIAEDLPDGLPEALN-----DDTRPRKLRPGDSLLVDTKAG 227
>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET:
NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*
Length = 325
Score = 27.2 bits (61), Expect = 8.7
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 66 IRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVL 121
++PGE +L +G G A A G +LI T S S E+ A GA +
Sbjct: 138 VKPGEIILFHAAAGGVGSLACQWAKALGAKLIGT--VS-SPEKAAHAKALGAWETI 190
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 26.8 bits (59), Expect = 8.9
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 77 TSGNTGIGLAFMA--AAKGYRLIIT 99
T GN GIG ++ G +++T
Sbjct: 18 TGGNKGIGFEICKQLSSNGIMVVLT 42
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target,
NYSGXRC, PSI, protein structure initiative; 2.40A
{Mycobacterium tuberculosis} SCOP: c.26.2.4
Length = 163
Score = 26.5 bits (59), Expect = 9.1
Identities = 15/58 (25%), Positives = 20/58 (34%), Gaps = 8/58 (13%)
Query: 268 LVGI----SSGAATAAAIQIAKRPENAGKLIVVVF--PSFGERYLSSVLFESVKKEAE 319
+VG SS A A QIA +A +I + R + ES K
Sbjct: 21 VVGTDGSDSSMRAVDRAAQIAGA--DAKLIIASAYLPQHEDARAADILKDESYKVTGT 76
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.134 0.374
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,089,952
Number of extensions: 338913
Number of successful extensions: 874
Number of sequences better than 10.0: 1
Number of HSP's gapped: 794
Number of HSP's successfully gapped: 100
Length of query: 325
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 231
Effective length of database: 4,077,219
Effective search space: 941837589
Effective search space used: 941837589
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (25.6 bits)