Your job contains 1 sequence.
>020530
MSLLINQSVHFSRISCHQRSTAYGKQMAPGVSVHKSHSVAKKSIRCFSTNTFLSTLTVAN
LAAIGNAKALTMENVLEGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTS
LAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGV
GASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQ
AYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGA
LQVVSCLLGLIYCVATTSPTWILTS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 020530
(325 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|Q748P3 - symbol:dsbD "Thiol:disulfide interchan... 249 3.0e-21 1
TIGR_CMR|GSU_2958 - symbol:GSU_2958 "thiol:disulfide inte... 249 3.0e-21 1
TIGR_CMR|CHY_1095 - symbol:CHY_1095 "thioredoxin domain s... 243 2.6e-20 1
UNIPROTKB|Q5LUR2 - symbol:soxV "Sulfur oxidation V protei... 201 3.7e-16 1
TIGR_CMR|SPO_0991 - symbol:SPO_0991 "sulfur oxidation V p... 201 3.7e-16 1
TIGR_CMR|CBU_1723 - symbol:CBU_1723 "thiol:disulfide inte... 168 1.0e-09 1
TIGR_CMR|SO_0696 - symbol:SO_0696 "thiol:disulfide interc... 164 4.3e-09 2
UNIPROTKB|Q5LS73 - symbol:ccdA "Cytochrome c-type biogene... 153 5.3e-09 1
TIGR_CMR|SPO_1896 - symbol:SPO_1896 "cytochrome c-type bi... 153 5.3e-09 1
TIGR_CMR|CPS_0953 - symbol:CPS_0953 "thiol:disulfide inte... 157 1.8e-08 1
UNIPROTKB|Q74DJ4 - symbol:ccdA "Cytochrome c biogenesis p... 142 1.0e-07 1
TIGR_CMR|GSU_1322 - symbol:GSU_1322 "cytochrome c biogene... 142 1.0e-07 1
UNIPROTKB|Q4K909 - symbol:dsbD "Thiol:disulfide interchan... 147 2.3e-07 1
UNIPROTKB|Q81Y30 - symbol:ccdA2 "Cytochrome c-type biogen... 138 2.8e-07 1
TIGR_CMR|BA_3727 - symbol:BA_3727 "cytochrome c-type biog... 138 2.8e-07 1
UNIPROTKB|Q9KNN1 - symbol:dsbD "Thiol:disulfide interchan... 141 1.1e-06 1
TIGR_CMR|VC_2701 - symbol:VC_2701 "thiol:disulfide interc... 141 1.1e-06 1
UNIPROTKB|P36655 - symbol:dipZ species:83333 "Escherichia... 140 1.3e-06 1
UNIPROTKB|Q3Z8T8 - symbol:ccdA "Cytochrome c-type biogene... 131 2.0e-06 1
TIGR_CMR|DET_0619 - symbol:DET_0619 "cytochrome c-type bi... 131 2.0e-06 1
TIGR_CMR|CJE_0706 - symbol:CJE_0706 "thiol:disulfide inte... 128 3.0e-05 1
UNIPROTKB|Q81S91 - symbol:ccdA1 "Cytochrome c-type biogen... 119 5.7e-05 1
TIGR_CMR|BA_1778 - symbol:BA_1778 "cytochrome c-type biog... 119 5.7e-05 1
>UNIPROTKB|Q748P3 [details] [associations]
symbol:dsbD "Thiol:disulfide interchange protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003834 Pfam:PF02683 GO:GO:0016020
GO:GO:0017004 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0055114
RefSeq:NP_954000.1 ProteinModelPortal:Q748P3 GeneID:2688320
KEGG:gsu:GSU2958 PATRIC:22028777 HOGENOM:HOG000017410 OMA:QMMGFYE
ProtClustDB:CLSK829027 BioCyc:GSUL243231:GH27-2918-MONOMER
Uniprot:Q748P3
Length = 228
Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
Identities = 58/193 (30%), Positives = 97/193 (50%)
Query: 118 FTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSXXXXXXXXX 177
F + +F G+++S SPC L+ +PL +G++G + + +SR + S++F
Sbjct: 16 FLAFVAVFVGGVLSSASPCVLATIPLVVGFVGGYAA-ESRKKAFLYSLSFIVGLSLTFTI 74
Query: 178 XXVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPS 237
A+ G +G +G A +A+ MGL ++ EL+LP F P+ F
Sbjct: 75 FGAAAALLGTMFGTVGGWWYAAVGAVAVAMGLQMMGFYELRLP-VLPQFRPKRGG--FWG 131
Query: 238 SVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASF 297
A L GL F +A+SPC+TPVL +L + A + L G LL +Y G+ +L A +F
Sbjct: 132 ---ALLLGLFFGVASSPCATPVLVVILSFAALQGNILYGTLLLFTYALGHCLLMLAAGTF 188
Query: 298 AGALQVVSCLLGL 310
G ++ + G+
Sbjct: 189 TGFVEAFAASRGV 201
>TIGR_CMR|GSU_2958 [details] [associations]
symbol:GSU_2958 "thiol:disulfide interchange protein,
putative" species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003834 Pfam:PF02683 GO:GO:0016020
GO:GO:0017004 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0055114
RefSeq:NP_954000.1 ProteinModelPortal:Q748P3 GeneID:2688320
KEGG:gsu:GSU2958 PATRIC:22028777 HOGENOM:HOG000017410 OMA:QMMGFYE
ProtClustDB:CLSK829027 BioCyc:GSUL243231:GH27-2918-MONOMER
Uniprot:Q748P3
Length = 228
Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
Identities = 58/193 (30%), Positives = 97/193 (50%)
Query: 118 FTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSXXXXXXXXX 177
F + +F G+++S SPC L+ +PL +G++G + + +SR + S++F
Sbjct: 16 FLAFVAVFVGGVLSSASPCVLATIPLVVGFVGGYAA-ESRKKAFLYSLSFIVGLSLTFTI 74
Query: 178 XXVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPS 237
A+ G +G +G A +A+ MGL ++ EL+LP F P+ F
Sbjct: 75 FGAAAALLGTMFGTVGGWWYAAVGAVAVAMGLQMMGFYELRLP-VLPQFRPKRGG--FWG 131
Query: 238 SVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASF 297
A L GL F +A+SPC+TPVL +L + A + L G LL +Y G+ +L A +F
Sbjct: 132 ---ALLLGLFFGVASSPCATPVLVVILSFAALQGNILYGTLLLFTYALGHCLLMLAAGTF 188
Query: 298 AGALQVVSCLLGL 310
G ++ + G+
Sbjct: 189 TGFVEAFAASRGV 201
>TIGR_CMR|CHY_1095 [details] [associations]
symbol:CHY_1095 "thioredoxin domain
selenoprotein/cytochrome C biogenesis family protein"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0017004 "cytochrome complex assembly" evidence=ISS]
InterPro:IPR003834 InterPro:IPR013766 Pfam:PF00085 Pfam:PF02683
GO:GO:0016021 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:3.40.30.10 InterPro:IPR012336 SUPFAM:SSF52833 GO:GO:0017004
GO:GO:0055114 GO:GO:0045454 PROSITE:PS51352 RefSeq:YP_359941.1
ProteinModelPortal:Q3AD43 STRING:Q3AD43 GeneID:3727471
KEGG:chy:CHY_1095 PATRIC:21275328 eggNOG:COG0785
BioCyc:CHYD246194:GJCN-1094-MONOMER Uniprot:Q3AD43
Length = 395
Score = 243 (90.6 bits), Expect = 2.6e-20, P = 2.6e-20
Identities = 66/208 (31%), Positives = 96/208 (46%)
Query: 100 SAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQ 159
S Q + + G L +L V+F G+ TS +PC L ++PL +GY G + +G+S A+
Sbjct: 167 SFAQTLADKLPGLLGDSKLLALFVVFLGGIATSFTPCILGMIPLIIGYTGGY-AGRSPAK 225
Query: 160 IIGDSIAFSXXXXXXXXXXXVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQL 219
S+ F VG G +AI+MG ++ + L
Sbjct: 226 GFIYSLFFVLGLATTLTLLGVGIGVLGTFIKSRLFAFNFILGIVAILMGFAVMGFYTINL 285
Query: 220 PSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTL 279
P P F S YL GL F L+ASPC+TPVL ++ Y PL GG L
Sbjct: 286 PGL--KRMPVKGTGLFSS----YLMGLFFGLSASPCATPVLIVIVTYALAKASPLFGGAL 339
Query: 280 LLSYTTGYVAPLLLAASFAGALQVVSCL 307
L SY+ G+ PL+LA +F+ L ++ L
Sbjct: 340 LFSYSFGHGLPLILAGTFSAFLGKITSL 367
>UNIPROTKB|Q5LUR2 [details] [associations]
symbol:soxV "Sulfur oxidation V protein" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0016491 "oxidoreductase activity"
evidence=ISS] [GO:0019417 "sulfur oxidation" evidence=ISS]
InterPro:IPR003834 Pfam:PF02683 GO:GO:0016020 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0016491 GO:GO:0017004 GO:GO:0019417
HOGENOM:HOG000097105 KO:K06196 RefSeq:YP_166243.1
ProteinModelPortal:Q5LUR2 GeneID:3193615 KEGG:sil:SPO0991
PATRIC:23375273 OMA:PFYLSYM ProtClustDB:CLSK933404 Uniprot:Q5LUR2
Length = 245
Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 58/188 (30%), Positives = 90/188 (47%)
Query: 121 LAVIFGAGLVTSLSPCTLSVLPLTLGYIGAF------GSGK----SRAQIIGDSIAFSXX 170
L +F AGL++ +PC L ++P L Y+G G G+ ++ ++I S+AF+
Sbjct: 7 LGALF-AGLLSFFTPCVLPMVPFYLSYMGGLSMAELRGDGRIAPGAQRRLIVSSVAFAAG 65
Query: 171 XXXXXXXXXVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRA 230
+GA+ G+ +G L AA+ + +V GL+ L +I + L D
Sbjct: 66 VTSVFMMLGMGATALGRLFGTYLDTLSWAAAAILVVFGLHFLGVIRVPLLYREARMDSTM 125
Query: 231 AAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAP 290
A+ + AYL GL F +PC P LA +L + + GG LLL Y G AP
Sbjct: 126 PASTL---LGAYLMGLAFGFGWTPCVGPALAAILMIASGMGEIWRGGLLLLVYGIGMTAP 182
Query: 291 LLLAASFA 298
++AA FA
Sbjct: 183 FVVAAFFA 190
>TIGR_CMR|SPO_0991 [details] [associations]
symbol:SPO_0991 "sulfur oxidation V protein"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0016491
"oxidoreductase activity" evidence=ISS] [GO:0019417 "sulfur
oxidation" evidence=ISS] InterPro:IPR003834 Pfam:PF02683
GO:GO:0016020 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0016491
GO:GO:0017004 GO:GO:0019417 HOGENOM:HOG000097105 KO:K06196
RefSeq:YP_166243.1 ProteinModelPortal:Q5LUR2 GeneID:3193615
KEGG:sil:SPO0991 PATRIC:23375273 OMA:PFYLSYM ProtClustDB:CLSK933404
Uniprot:Q5LUR2
Length = 245
Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 58/188 (30%), Positives = 90/188 (47%)
Query: 121 LAVIFGAGLVTSLSPCTLSVLPLTLGYIGAF------GSGK----SRAQIIGDSIAFSXX 170
L +F AGL++ +PC L ++P L Y+G G G+ ++ ++I S+AF+
Sbjct: 7 LGALF-AGLLSFFTPCVLPMVPFYLSYMGGLSMAELRGDGRIAPGAQRRLIVSSVAFAAG 65
Query: 171 XXXXXXXXXVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRA 230
+GA+ G+ +G L AA+ + +V GL+ L +I + L D
Sbjct: 66 VTSVFMMLGMGATALGRLFGTYLDTLSWAAAAILVVFGLHFLGVIRVPLLYREARMDSTM 125
Query: 231 AAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAP 290
A+ + AYL GL F +PC P LA +L + + GG LLL Y G AP
Sbjct: 126 PASTL---LGAYLMGLAFGFGWTPCVGPALAAILMIASGMGEIWRGGLLLLVYGIGMTAP 182
Query: 291 LLLAASFA 298
++AA FA
Sbjct: 183 FVVAAFFA 190
>TIGR_CMR|CBU_1723 [details] [associations]
symbol:CBU_1723 "thiol:disulfide interchange protein DsbD"
species:227377 "Coxiella burnetii RSA 493" [GO:0009055 "electron
carrier activity" evidence=ISS] [GO:0017004 "cytochrome complex
assembly" evidence=ISS] HAMAP:MF_00399 InterPro:IPR003834
InterPro:IPR022910 Pfam:PF02683 GO:GO:0016021 GO:GO:0005886
GO:GO:0009055 Gene3D:3.40.30.10 InterPro:IPR012336 SUPFAM:SSF52833
GO:GO:0017004 GO:GO:0022900 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0045454 PROSITE:PS51352 GO:GO:0047134 HOGENOM:HOG000254982
KO:K04084 PANTHER:PTHR32234:SF1 RefSeq:NP_820704.2
ProteinModelPortal:Q83B02 PRIDE:Q83B02 GeneID:1209634
KEGG:cbu:CBU_1723 PATRIC:17932181 OMA:AQLQSPW
ProtClustDB:CLSK914981 BioCyc:CBUR227377:GJ7S-1696-MONOMER
Uniprot:Q83B02
Length = 630
Score = 168 (64.2 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 58/188 (30%), Positives = 80/188 (42%)
Query: 118 FTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSXXXXXXXXX 177
F L FG GL+ S +PC L ++P+ G I G K + G S+ +
Sbjct: 221 FFVLLSFFGFGLLLSFTPCVLPMIPVLSGII--VGQQKYPKRAFGLSLMYVLGMAITYAI 278
Query: 178 XXVGASFAGKAYGQIGTGLPLAA---SGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAAN 234
V F G Q P S L I M L+L + +LQLP + R A A+
Sbjct: 279 AGVIFGFIGSTV-QAAFQNPWLIGLFSLLFIAMALSLFGLYDLQLPQ---RWQTRLAQAS 334
Query: 235 FPSSVQAYLA----GLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAP 290
YL G L SPC TP L +LGY++ + + +GG L + G AP
Sbjct: 335 DRQKHGTYLGTALMGALSTLILSPCVTPALVGVLGYISHTGNASLGGVALFTMGLGMGAP 394
Query: 291 LLLAASFA 298
LLL +F+
Sbjct: 395 LLLLGAFS 402
>TIGR_CMR|SO_0696 [details] [associations]
symbol:SO_0696 "thiol:disulfide interchange protein DsbD"
species:211586 "Shewanella oneidensis MR-1" [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0017004 "cytochrome complex assembly"
evidence=ISS] HAMAP:MF_00399 InterPro:IPR003834 InterPro:IPR017937
InterPro:IPR022910 Pfam:PF02683 PROSITE:PS00194 GO:GO:0016021
GO:GO:0005886 GO:GO:0009055 Gene3D:3.40.30.10 InterPro:IPR012336
SUPFAM:SSF52833 GO:GO:0017004 GO:GO:0022900 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0045454 PROSITE:PS51352
GO:GO:0047134 KO:K04084 HSSP:P36655 HOGENOM:HOG000254981
ProtClustDB:PRK00293 PANTHER:PTHR32234:SF1 RefSeq:NP_716329.1
ProteinModelPortal:Q8EIY1 SMR:Q8EIY1 GeneID:1168556
KEGG:son:SO_0696 PATRIC:23521074 OMA:QSAVENM Uniprot:Q8EIY1
Length = 610
Score = 164 (62.8 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 53/186 (28%), Positives = 84/186 (45%)
Query: 120 SLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSXXXXXXXXXXX 179
+L + FG G+ +L+PC + P+ G I G S A+ S+A+
Sbjct: 200 TLVIFFGLGIGLALTPCVFPMYPILSGIIVGQGQKLSTAKAFTLSMAYVQGMAITYSILG 259
Query: 180 VGASFAGKAYGQIGTGLPLAASGLAI---VMGLNLLEIIELQLPSFF-DNFDPRAAAANF 235
+ + AG Y Q P LAI V+ L++ + +L+LPS F + + +
Sbjct: 260 LVVASAGMKY-QAALQHPAVLVVLAILFFVLSLSMFGLYDLKLPSRFQEKMNSISNNQKG 318
Query: 236 PSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAA 295
+ + +L G+ L ASPC+T L+ L YVA + D L G L + G PLL+
Sbjct: 319 GNLIGVFLMGVISGLVASPCTTAPLSGALVYVAQTGDLLQGFLALYVLSMGMGVPLLIIG 378
Query: 296 SFAGAL 301
+ G L
Sbjct: 379 TSGGKL 384
Score = 38 (18.4 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 51 TFLSTLTVANLAAIGNAKA 69
TF + L +A LA GNA A
Sbjct: 8 TFTALLLLAPLALSGNAFA 26
>UNIPROTKB|Q5LS73 [details] [associations]
symbol:ccdA "Cytochrome c-type biogenesis protein CcdA"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003674
"molecular_function" evidence=ND] [GO:0017004 "cytochrome complex
assembly" evidence=ISS] InterPro:IPR003834 Pfam:PF02683
GO:GO:0016020 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0017004
GO:GO:0055114 HOGENOM:HOG000097105 KO:K06196 RefSeq:YP_167132.1
GeneID:3195230 KEGG:sil:SPO1896 PATRIC:23377123 OMA:PYLAYMS
ProtClustDB:CLSK835976 Uniprot:Q5LS73
Length = 250
Score = 153 (58.9 bits), Expect = 5.3e-09, P = 5.3e-09
Identities = 57/178 (32%), Positives = 79/178 (44%)
Query: 128 GLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSXXXXXXXXXXXVGA--SFA 185
G+V+ LSPC L ++P L Y+ G+ + Q A V F
Sbjct: 22 GIVSFLSPCVLPIVPPYLAYMSGVTLGEIQDQAAARRKATLAALFFVLGLSTVFLLLGFT 81
Query: 186 GKAYGQ-IGTGLPLAA--SGLA-IVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSV-Q 240
A+G + + L A SG+ IV GL+ L + + L D + R + SV
Sbjct: 82 ASAFGAFVLSNQELFAKVSGVVVIVFGLHFLSVFRIPL---LDR-EARMQTGDAGGSVFG 137
Query: 241 AYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLS-YTTGYVAPLLLAASF 297
AY+ GL FA +PC P L +L +A S+ + GTLLL Y G P LLAA F
Sbjct: 138 AYVLGLAFAFGWTPCIGPQLGAILS-LAASEASVARGTLLLGVYAAGLGVPFLLAAMF 194
>TIGR_CMR|SPO_1896 [details] [associations]
symbol:SPO_1896 "cytochrome c-type biogenesis protein
CcdA" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003674
"molecular_function" evidence=ND] [GO:0016021 "integral to
membrane" evidence=ISS] [GO:0017004 "cytochrome complex assembly"
evidence=ISS] InterPro:IPR003834 Pfam:PF02683 GO:GO:0016020
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0017004 GO:GO:0055114
HOGENOM:HOG000097105 KO:K06196 RefSeq:YP_167132.1 GeneID:3195230
KEGG:sil:SPO1896 PATRIC:23377123 OMA:PYLAYMS ProtClustDB:CLSK835976
Uniprot:Q5LS73
Length = 250
Score = 153 (58.9 bits), Expect = 5.3e-09, P = 5.3e-09
Identities = 57/178 (32%), Positives = 79/178 (44%)
Query: 128 GLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSXXXXXXXXXXXVGA--SFA 185
G+V+ LSPC L ++P L Y+ G+ + Q A V F
Sbjct: 22 GIVSFLSPCVLPIVPPYLAYMSGVTLGEIQDQAAARRKATLAALFFVLGLSTVFLLLGFT 81
Query: 186 GKAYGQ-IGTGLPLAA--SGLA-IVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSV-Q 240
A+G + + L A SG+ IV GL+ L + + L D + R + SV
Sbjct: 82 ASAFGAFVLSNQELFAKVSGVVVIVFGLHFLSVFRIPL---LDR-EARMQTGDAGGSVFG 137
Query: 241 AYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLS-YTTGYVAPLLLAASF 297
AY+ GL FA +PC P L +L +A S+ + GTLLL Y G P LLAA F
Sbjct: 138 AYVLGLAFAFGWTPCIGPQLGAILS-LAASEASVARGTLLLGVYAAGLGVPFLLAAMF 194
>TIGR_CMR|CPS_0953 [details] [associations]
symbol:CPS_0953 "thiol:disulfide interchange protein DsbD"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003756 "protein
disulfide isomerase activity" evidence=ISS] [GO:0009055 "electron
carrier activity" evidence=ISS] [GO:0047134 "protein-disulfide
reductase activity" evidence=ISS] HAMAP:MF_00399 InterPro:IPR003834
InterPro:IPR022910 Pfam:PF02683 PROSITE:PS00194 GO:GO:0016021
GO:GO:0005886 Gene3D:3.40.30.10 InterPro:IPR012336 SUPFAM:SSF52833
GO:GO:0017004 GO:GO:0022900 EMBL:CP000083 GenomeReviews:CP000083_GR
PROSITE:PS51352 GO:GO:0047134 eggNOG:COG4232 KO:K04084
RefSeq:YP_267702.1 HSSP:P36655 ProteinModelPortal:Q487R3
STRING:Q487R3 GeneID:3518818 KEGG:cps:CPS_0953 PATRIC:21465187
HOGENOM:HOG000254981 OMA:LPKAGSW ProtClustDB:PRK00293
BioCyc:CPSY167879:GI48-1039-MONOMER PANTHER:PTHR32234:SF1
Uniprot:Q487R3
Length = 608
Score = 157 (60.3 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 58/239 (24%), Positives = 102/239 (42%)
Query: 67 AKALTMENVLEGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFG 126
+K + + + G ++ +D + G S Q ++ +L Q S L T +A G
Sbjct: 146 SKVIKLSKFILGESTSAPSSDAAQQTNEGEVKKSEQHQLSD-MLKQDSLL-LTLIAFFVG 203
Query: 127 AGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSXXXXXXXXXXXVGASFAG 186
GL+ S +PC + P+ G I G G + + S + V + AG
Sbjct: 204 -GLLLSFTPCVFPMYPILTGIIVGQGEGLTTKKAFTLSFFYVQGMAITYTLLGVVVAMAG 262
Query: 187 KAYGQIGTGLPLAASGLAIV---MGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYL 243
+ + P+ GL+I+ + L++ + L LP+ + N + S+ L
Sbjct: 263 AKFQAVFQH-PIVLIGLSILFIFLALSMFGVFNLALPASWQNKLNNVSNKQKGGSITGVL 321
Query: 244 A-GLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGAL 301
G+ L ASPC+T L L Y++ + D ++G + L + + G PLL+ S G L
Sbjct: 322 MMGVISGLVASPCTTAPLTGALLYISQTGDVVLGASALYALSLGMGLPLLILGSSGGKL 380
>UNIPROTKB|Q74DJ4 [details] [associations]
symbol:ccdA "Cytochrome c biogenesis protein CcdA"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR003834 Pfam:PF02683
GO:GO:0016020 GO:GO:0017004 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0055114 HOGENOM:HOG000097105 KO:K06196 OMA:PYLAYMS
RefSeq:NP_952375.1 GeneID:2685951 KEGG:gsu:GSU1322 PATRIC:22025421
ProtClustDB:CLSK828300 BioCyc:GSUL243231:GH27-1309-MONOMER
Uniprot:Q74DJ4
Length = 242
Score = 142 (55.0 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 48/180 (26%), Positives = 78/180 (43%)
Query: 125 FGAGLVTSLSPCTLSVLPLTLGYI-G-AFG-------SGKSRAQIIGDSIAFSXXXXXXX 175
F AGL++ LSPC L ++P + YI G +F + K R Q I S+ F
Sbjct: 12 FVAGLLSFLSPCVLPLIPSFITYITGLSFADIQSEHPTHKVRQQTIVHSLLFIAGFTFVF 71
Query: 176 XXXXVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANF 235
A+F G + + L ++ G+++ ++ + L A +
Sbjct: 72 VLLGASATFIGGFLHEHMNVIRKVGGALIVIFGIHVSGLVPIHLLLGEKRLQVHRKPAGY 131
Query: 236 PSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAA 295
S +L GL FA +PC P+LA++L AT + G LL +Y+ G P L++
Sbjct: 132 LGS---FLVGLAFAAGWTPCIGPILASILMVAATEETVTKGILLLFTYSMGLAIPFFLSS 188
>TIGR_CMR|GSU_1322 [details] [associations]
symbol:GSU_1322 "cytochrome c biogenesis protein CcdA"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0016020 "membrane"
evidence=ISS] [GO:0017004 "cytochrome complex assembly"
evidence=ISS] InterPro:IPR003834 Pfam:PF02683 GO:GO:0016020
GO:GO:0017004 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0055114
HOGENOM:HOG000097105 KO:K06196 OMA:PYLAYMS RefSeq:NP_952375.1
GeneID:2685951 KEGG:gsu:GSU1322 PATRIC:22025421
ProtClustDB:CLSK828300 BioCyc:GSUL243231:GH27-1309-MONOMER
Uniprot:Q74DJ4
Length = 242
Score = 142 (55.0 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 48/180 (26%), Positives = 78/180 (43%)
Query: 125 FGAGLVTSLSPCTLSVLPLTLGYI-G-AFG-------SGKSRAQIIGDSIAFSXXXXXXX 175
F AGL++ LSPC L ++P + YI G +F + K R Q I S+ F
Sbjct: 12 FVAGLLSFLSPCVLPLIPSFITYITGLSFADIQSEHPTHKVRQQTIVHSLLFIAGFTFVF 71
Query: 176 XXXXVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANF 235
A+F G + + L ++ G+++ ++ + L A +
Sbjct: 72 VLLGASATFIGGFLHEHMNVIRKVGGALIVIFGIHVSGLVPIHLLLGEKRLQVHRKPAGY 131
Query: 236 PSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAA 295
S +L GL FA +PC P+LA++L AT + G LL +Y+ G P L++
Sbjct: 132 LGS---FLVGLAFAAGWTPCIGPILASILMVAATEETVTKGILLLFTYSMGLAIPFFLSS 188
>UNIPROTKB|Q4K909 [details] [associations]
symbol:dsbD "Thiol:disulfide interchange protein DsbD"
species:220664 "Pseudomonas protegens Pf-5" [GO:0009055 "electron
carrier activity" evidence=ISS] [GO:0016021 "integral to membrane"
evidence=ISS] [GO:0017004 "cytochrome complex assembly"
evidence=ISS] [GO:0022900 "electron transport chain" evidence=ISS]
[GO:0047134 "protein-disulfide reductase activity" evidence=ISS]
HAMAP:MF_00399 InterPro:IPR003834 InterPro:IPR017937
InterPro:IPR022910 Pfam:PF02683 PROSITE:PS00194 GO:GO:0016021
GO:GO:0005886 GO:GO:0009055 Gene3D:3.40.30.10 InterPro:IPR012336
SUPFAM:SSF52833 GO:GO:0017004 GO:GO:0022900 EMBL:CP000076
GenomeReviews:CP000076_GR GO:GO:0045454 PROSITE:PS51352
GO:GO:0047134 eggNOG:COG4232 HOGENOM:HOG000254982 KO:K04084
HSSP:P36655 PANTHER:PTHR32234:SF1 RefSeq:YP_261274.1
ProteinModelPortal:Q4K909 STRING:Q4K909 GeneID:3476920
KEGG:pfl:PFL_4182 PATRIC:19877771 OMA:DIQAPRW
ProtClustDB:CLSK867296 BioCyc:PFLU220664:GIX8-4217-MONOMER
Uniprot:Q4K909
Length = 583
Score = 147 (56.8 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 48/197 (24%), Positives = 79/197 (40%)
Query: 100 SAGQQANEAVLGQLSALSF-TSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRA 158
S G ++ + L S+ L FG GL+ + +PC+L +LP+ G + G+ R
Sbjct: 149 SNGSAQDQLLANDLQHKSWGLGLLAFFGFGLLLAFAPCSLPMLPILAGMVVGSGASPRRG 208
Query: 159 QIIGDSIAFSXXXXXXXXXXXVGASFAGKAYGQIGTGLPLAA-SGLAIVMGLNLLEIIEL 217
+ S + A + L + + L +++ L + EL
Sbjct: 209 LALASSYVLCMALVYAGMGV-IAALLGSNLQAWLQQPWVLGSFAALFVLLSLPMFGFFEL 267
Query: 218 QLPSFF-DNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIG 276
Q+P+ D + + S + + G AL PC T LA L Y+A + + L G
Sbjct: 268 QMPALLRDRLEGASRQRQGGSLIGCGILGALSALLVGPCMTAPLAGGLLYIAQTGNALFG 327
Query: 277 GTLLLSYTTGYVAPLLL 293
G L + G PLLL
Sbjct: 328 GLALFALGLGIGLPLLL 344
>UNIPROTKB|Q81Y30 [details] [associations]
symbol:ccdA2 "Cytochrome c-type biogenesis protein CcdA"
species:1392 "Bacillus anthracis" [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR003834 Pfam:PF02683 GO:GO:0016020
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0017004
GO:GO:0055114 HOGENOM:HOG000097105 KO:K06196 RefSeq:NP_845990.1
RefSeq:YP_020364.1 RefSeq:YP_029710.1 ProteinModelPortal:Q81Y30
DNASU:1086807 EnsemblBacteria:EBBACT00000012743
EnsemblBacteria:EBBACT00000014406 EnsemblBacteria:EBBACT00000019357
GeneID:1086807 GeneID:2819206 GeneID:2848268 KEGG:ban:BA_3727
KEGG:bar:GBAA_3727 KEGG:bat:BAS3455 OMA:GYIMIVM
ProtClustDB:CLSK887354 BioCyc:BANT260799:GJAJ-3516-MONOMER
BioCyc:BANT261594:GJ7F-3628-MONOMER Uniprot:Q81Y30
Length = 235
Score = 138 (53.6 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 47/186 (25%), Positives = 81/186 (43%)
Query: 120 SLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSR---AQIIGDSIAFSXXXXXXXX 176
S+ + FGAG ++ +SPC L + P L YI + + A + S+ +
Sbjct: 5 SIFLAFGAGFLSFISPCCLPLYPAFLSYITGMSVSELKEENAMLRKRSMIHTAFFLLGFS 64
Query: 177 XXXVGASFAGKAYGQIGTG---LPLAASGL-AIVMGLNLLEIIELQLPSFFDNFDPRAAA 232
+ F G I T L G+ IV GL ++ + + P F D +
Sbjct: 65 IIFIAIGFGTSFIGGIFTNYKDLIRQLGGIFIIVFGLIIVGVFK---PKFLMQ-DRKFTF 120
Query: 233 ANFPSSV-QAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPL 291
N PS + L GL FA +PC+ P+L +++G AT+ + + +++Y G+ P
Sbjct: 121 KNRPSGYFGSVLIGLAFAAGWTPCTGPILVSVIGLAATNPESAM--IYMIAYILGFAIPF 178
Query: 292 LLAASF 297
+ + F
Sbjct: 179 FVLSFF 184
>TIGR_CMR|BA_3727 [details] [associations]
symbol:BA_3727 "cytochrome c-type biogenesis protein CcdA"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0016020 "membrane"
evidence=ISS] [GO:0017004 "cytochrome complex assembly"
evidence=ISS] [GO:0030436 "asexual sporulation" evidence=ISS]
InterPro:IPR003834 Pfam:PF02683 GO:GO:0016020 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0017004
GO:GO:0055114 HOGENOM:HOG000097105 KO:K06196 RefSeq:NP_845990.1
RefSeq:YP_020364.1 RefSeq:YP_029710.1 ProteinModelPortal:Q81Y30
DNASU:1086807 EnsemblBacteria:EBBACT00000012743
EnsemblBacteria:EBBACT00000014406 EnsemblBacteria:EBBACT00000019357
GeneID:1086807 GeneID:2819206 GeneID:2848268 KEGG:ban:BA_3727
KEGG:bar:GBAA_3727 KEGG:bat:BAS3455 OMA:GYIMIVM
ProtClustDB:CLSK887354 BioCyc:BANT260799:GJAJ-3516-MONOMER
BioCyc:BANT261594:GJ7F-3628-MONOMER Uniprot:Q81Y30
Length = 235
Score = 138 (53.6 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 47/186 (25%), Positives = 81/186 (43%)
Query: 120 SLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSR---AQIIGDSIAFSXXXXXXXX 176
S+ + FGAG ++ +SPC L + P L YI + + A + S+ +
Sbjct: 5 SIFLAFGAGFLSFISPCCLPLYPAFLSYITGMSVSELKEENAMLRKRSMIHTAFFLLGFS 64
Query: 177 XXXVGASFAGKAYGQIGTG---LPLAASGL-AIVMGLNLLEIIELQLPSFFDNFDPRAAA 232
+ F G I T L G+ IV GL ++ + + P F D +
Sbjct: 65 IIFIAIGFGTSFIGGIFTNYKDLIRQLGGIFIIVFGLIIVGVFK---PKFLMQ-DRKFTF 120
Query: 233 ANFPSSV-QAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPL 291
N PS + L GL FA +PC+ P+L +++G AT+ + + +++Y G+ P
Sbjct: 121 KNRPSGYFGSVLIGLAFAAGWTPCTGPILVSVIGLAATNPESAM--IYMIAYILGFAIPF 178
Query: 292 LLAASF 297
+ + F
Sbjct: 179 FVLSFF 184
>UNIPROTKB|Q9KNN1 [details] [associations]
symbol:dsbD "Thiol:disulfide interchange protein DsbD"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003824 "catalytic activity" evidence=ISS] [GO:0017004
"cytochrome complex assembly" evidence=ISS] HAMAP:MF_00399
InterPro:IPR003834 InterPro:IPR017937 InterPro:IPR022910
Pfam:PF02683 PROSITE:PS00194 GO:GO:0016021 GO:GO:0005886
GO:GO:0003824 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.40.30.10 InterPro:IPR012336 SUPFAM:SSF52833 GO:GO:0017004
GO:GO:0022900 GO:GO:0045454 PROSITE:PS51352 GO:GO:0047134
eggNOG:COG4232 KO:K04084 OMA:GDIQMEN ProtClustDB:PRK00293
PANTHER:PTHR32234:SF1 PIR:A82043 RefSeq:NP_232328.1
ProteinModelPortal:Q9KNN1 SMR:Q9KNN1 DNASU:2615529 GeneID:2615529
KEGG:vch:VC2701 PATRIC:20084422 Uniprot:Q9KNN1
Length = 600
Score = 141 (54.7 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 56/208 (26%), Positives = 90/208 (43%)
Query: 100 SAGQQANEAVLGQLSALSFTSLAVI-FGAGLVTSLSPCTLSVLP-LTLGYIGAFGSGKSR 157
+A A +++ +L+ +T L + G GL + +PC L + P LT +G + R
Sbjct: 179 NAPTSAQDSLANKLAQNWWTPLLFLALGVGL--AFTPCVLPMYPILTSIVLGGAQLTQRR 236
Query: 158 AQIIGDSIAFSXXXXXXXXXXXVGASFAGKAYGQIGTGLPLAASGLAIV---MGLNLLEI 214
A ++ S+ + + + AG + Q P GL+++ + L++ +
Sbjct: 237 ALLL--SVIYVQGMALTYTLLGLVVASAGLQF-QAALQHPYVLMGLSVLFVALALSMFGL 293
Query: 215 IELQLPSFFDNFDPRAAAANFPSSVQAYLA-GLTFALAASPCSTPVLATLLGYVATSKDP 273
LQLPS + + A S+ A G L SPC+T L+ L YVA S D
Sbjct: 294 YSLQLPSGVQTWLNSLSNAQQGGSLPGVFAMGAISGLVCSPCTTAPLSGALLYVAQSGDL 353
Query: 274 LIGGTLLLSYTTGYVAPLLLAASFAGAL 301
L G L + G PL+L A F L
Sbjct: 354 LTGAVALYALAIGMGIPLILVAVFGNKL 381
>TIGR_CMR|VC_2701 [details] [associations]
symbol:VC_2701 "thiol:disulfide interchange protein DsbD"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0017004 "cytochrome complex
assembly" evidence=ISS] HAMAP:MF_00399 InterPro:IPR003834
InterPro:IPR017937 InterPro:IPR022910 Pfam:PF02683 PROSITE:PS00194
GO:GO:0016021 GO:GO:0005886 GO:GO:0003824 EMBL:AE003852
GenomeReviews:AE003852_GR Gene3D:3.40.30.10 InterPro:IPR012336
SUPFAM:SSF52833 GO:GO:0017004 GO:GO:0022900 GO:GO:0045454
PROSITE:PS51352 GO:GO:0047134 eggNOG:COG4232 KO:K04084 OMA:GDIQMEN
ProtClustDB:PRK00293 PANTHER:PTHR32234:SF1 PIR:A82043
RefSeq:NP_232328.1 ProteinModelPortal:Q9KNN1 SMR:Q9KNN1
DNASU:2615529 GeneID:2615529 KEGG:vch:VC2701 PATRIC:20084422
Uniprot:Q9KNN1
Length = 600
Score = 141 (54.7 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 56/208 (26%), Positives = 90/208 (43%)
Query: 100 SAGQQANEAVLGQLSALSFTSLAVI-FGAGLVTSLSPCTLSVLP-LTLGYIGAFGSGKSR 157
+A A +++ +L+ +T L + G GL + +PC L + P LT +G + R
Sbjct: 179 NAPTSAQDSLANKLAQNWWTPLLFLALGVGL--AFTPCVLPMYPILTSIVLGGAQLTQRR 236
Query: 158 AQIIGDSIAFSXXXXXXXXXXXVGASFAGKAYGQIGTGLPLAASGLAIV---MGLNLLEI 214
A ++ S+ + + + AG + Q P GL+++ + L++ +
Sbjct: 237 ALLL--SVIYVQGMALTYTLLGLVVASAGLQF-QAALQHPYVLMGLSVLFVALALSMFGL 293
Query: 215 IELQLPSFFDNFDPRAAAANFPSSVQAYLA-GLTFALAASPCSTPVLATLLGYVATSKDP 273
LQLPS + + A S+ A G L SPC+T L+ L YVA S D
Sbjct: 294 YSLQLPSGVQTWLNSLSNAQQGGSLPGVFAMGAISGLVCSPCTTAPLSGALLYVAQSGDL 353
Query: 274 LIGGTLLLSYTTGYVAPLLLAASFAGAL 301
L G L + G PL+L A F L
Sbjct: 354 LTGAVALYALAIGMGIPLILVAVFGNKL 381
>UNIPROTKB|P36655 [details] [associations]
symbol:dipZ species:83333 "Escherichia coli K-12"
[GO:0016491 "oxidoreductase activity" evidence=IMP;IDA] [GO:0005887
"integral to plasma membrane" evidence=IDA] [GO:0017004 "cytochrome
complex assembly" evidence=IEA;IMP] [GO:0006950 "response to
stress" evidence=IMP] [GO:0042493 "response to drug" evidence=IMP]
[GO:0071502 "cellular response to temperature stimulus"
evidence=IMP] [GO:0022900 "electron transport chain" evidence=IEA]
[GO:0015035 "protein disulfide oxidoreductase activity"
evidence=IGI;IMP] [GO:0055114 "oxidation-reduction process"
evidence=IEA;IDA] [GO:0047134 "protein-disulfide reductase
activity" evidence=IEA] [GO:0045454 "cell redox homeostasis"
evidence=IEA;IMP] [GO:0016021 "integral to membrane" evidence=RCA]
HAMAP:MF_00399 InterPro:IPR003834 InterPro:IPR017937
InterPro:IPR022910 Pfam:PF02683 PROSITE:PS00194 GO:GO:0005887
GO:GO:0006950 GO:GO:0042493 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0071502
Gene3D:3.40.30.10 InterPro:IPR012336 SUPFAM:SSF52833 GO:GO:0017004
GO:GO:0022900 EMBL:U14003 GO:GO:0045454 PROSITE:PS51352
GO:GO:0015035 GO:GO:0047134 EMBL:X77707 EMBL:Z36905 PDB:1JZD
PDBsum:1JZD eggNOG:COG4232 KO:K04084 HOGENOM:HOG000254981
OMA:LPKAGSW ProtClustDB:PRK00293 PANTHER:PTHR32234:SF1 PIR:S56364
RefSeq:NP_418559.1 RefSeq:YP_492279.1 PDB:1JPE PDB:1L6P PDB:1VRS
PDB:1Z5Y PDB:2FWE PDB:2FWF PDB:2FWG PDB:2FWH PDB:3PFU PDBsum:1JPE
PDBsum:1L6P PDBsum:1VRS PDBsum:1Z5Y PDBsum:2FWE PDBsum:2FWF
PDBsum:2FWG PDBsum:2FWH PDBsum:3PFU ProteinModelPortal:P36655
SMR:P36655 DIP:DIP-9476N TCDB:5.A.1.1.1
EnsemblBacteria:EBESCT00000000851 EnsemblBacteria:EBESCT00000014821
GeneID:12933697 GeneID:948649 KEGG:ecj:Y75_p4023 KEGG:eco:b4136
PATRIC:32123839 EchoBASE:EB2095 EcoGene:EG12178
BioCyc:EcoCyc:DSBD-MONOMER BioCyc:ECOL316407:JW5734-MONOMER
BioCyc:MetaCyc:DSBD-MONOMER EvolutionaryTrace:P36655
Genevestigator:P36655 Uniprot:P36655
Length = 565
Score = 140 (54.3 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 52/194 (26%), Positives = 83/194 (42%)
Query: 116 LSFTSL-AVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSXXXXXX 174
L F++L A++ G G+ + +PC L + PL G + S A+ + + +
Sbjct: 163 LPFSALWALLIGIGI--AFTPCVLPMYPLISGIVLGGKQRLSTARALLLTFIYVQGMALT 220
Query: 175 XXXXXVGASFAGKAYGQIGTGLPLAASGLAIV---MGLNLLEIIELQLPSFFDN----FD 227
+ + AG + Q P GLAIV + +++ + LQLPS
Sbjct: 221 YTALGLVVAAAGLQF-QAALQHPYVLIGLAIVFTLLAMSMFGLFTLQLPSSLQTRLTLMS 279
Query: 228 PRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGY 287
R + P V ++ G L SPC+T L+ +L Y+A S + +GG L Y G
Sbjct: 280 NRQQGGS-PGGV--FVMGAIAGLICSPCTTAPLSAILLYIAQSGNMWLGGGTLYLYALGM 336
Query: 288 VAPLLLAASFAGAL 301
PL+L F L
Sbjct: 337 GLPLMLITVFGNRL 350
>UNIPROTKB|Q3Z8T8 [details] [associations]
symbol:ccdA "Cytochrome c-type biogenesis protein CcdA"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR003834 Pfam:PF02683
GO:GO:0016020 GO:GO:0017004 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0055114 eggNOG:COG0785 RefSeq:YP_181361.1
ProteinModelPortal:Q3Z8T8 STRING:Q3Z8T8 GeneID:3230030
KEGG:det:DET0619 PATRIC:21608305 HOGENOM:HOG000097105 KO:K06196
OMA:YITGVSM ProtClustDB:CLSK837377
BioCyc:DETH243164:GJNF-620-MONOMER Uniprot:Q3Z8T8
Length = 233
Score = 131 (51.2 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 43/181 (23%), Positives = 74/181 (40%)
Query: 120 SLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQI------IGDSIAFSXXXXX 173
S + G GL SPC L ++P+ L + +R + S AF
Sbjct: 5 SYLLALGGGLAAFFSPCVLPMMPVYLASLTGREILDTRPDFAVSFKTLPHSAAFVAGFSL 64
Query: 174 XXXXXXVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSF-FDNFDPRAAA 232
A G + + + G+ ++ G +L + L+ PS F+ +
Sbjct: 65 VFTSLGALAGLGGVIINPSELWIRILSGGILVIFGGYML--LSLRFPSLSFEKHLFGQQS 122
Query: 233 ANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLL 292
S V+++L+G F LA +PC +P+L ++L + PL G LL ++ G P L
Sbjct: 123 LRGGSYVRSFLSGAIFTLAWTPCISPILGSILSLTFGGESPLYGSALLAVFSLGMGIPFL 182
Query: 293 L 293
+
Sbjct: 183 V 183
>TIGR_CMR|DET_0619 [details] [associations]
symbol:DET_0619 "cytochrome c-type biogenesis protein
CcdA" species:243164 "Dehalococcoides ethenogenes 195" [GO:0003674
"molecular_function" evidence=ND] [GO:0016020 "membrane"
evidence=ISS] [GO:0017004 "cytochrome complex assembly"
evidence=ISS] InterPro:IPR003834 Pfam:PF02683 GO:GO:0016020
GO:GO:0017004 EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0055114
eggNOG:COG0785 RefSeq:YP_181361.1 ProteinModelPortal:Q3Z8T8
STRING:Q3Z8T8 GeneID:3230030 KEGG:det:DET0619 PATRIC:21608305
HOGENOM:HOG000097105 KO:K06196 OMA:YITGVSM ProtClustDB:CLSK837377
BioCyc:DETH243164:GJNF-620-MONOMER Uniprot:Q3Z8T8
Length = 233
Score = 131 (51.2 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 43/181 (23%), Positives = 74/181 (40%)
Query: 120 SLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQI------IGDSIAFSXXXXX 173
S + G GL SPC L ++P+ L + +R + S AF
Sbjct: 5 SYLLALGGGLAAFFSPCVLPMMPVYLASLTGREILDTRPDFAVSFKTLPHSAAFVAGFSL 64
Query: 174 XXXXXXVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSF-FDNFDPRAAA 232
A G + + + G+ ++ G +L + L+ PS F+ +
Sbjct: 65 VFTSLGALAGLGGVIINPSELWIRILSGGILVIFGGYML--LSLRFPSLSFEKHLFGQQS 122
Query: 233 ANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLL 292
S V+++L+G F LA +PC +P+L ++L + PL G LL ++ G P L
Sbjct: 123 LRGGSYVRSFLSGAIFTLAWTPCISPILGSILSLTFGGESPLYGSALLAVFSLGMGIPFL 182
Query: 293 L 293
+
Sbjct: 183 V 183
>TIGR_CMR|CJE_0706 [details] [associations]
symbol:CJE_0706 "thiol:disulfide interchange protein DsbD"
species:195099 "Campylobacter jejuni RM1221" [GO:0009055 "electron
carrier activity" evidence=ISS] [GO:0016020 "membrane"
evidence=ISS] [GO:0017004 "cytochrome complex assembly"
evidence=ISS] [GO:0047134 "protein-disulfide reductase activity"
evidence=ISS] HAMAP:MF_00399 InterPro:IPR003834 InterPro:IPR022910
Pfam:PF02683 PROSITE:PS00194 GO:GO:0016021 GO:GO:0005886
Gene3D:3.40.30.10 InterPro:IPR012336 SUPFAM:SSF52833 GO:GO:0017004
GO:GO:0022900 EMBL:CP000025 GenomeReviews:CP000025_GR
PROSITE:PS51352 GO:GO:0047134 RefSeq:YP_178718.1
ProteinModelPortal:Q5HVG7 STRING:Q5HVG7 GeneID:3231972
KEGG:cjr:CJE0706 PATRIC:20043140 eggNOG:COG4232
HOGENOM:HOG000254982 KO:K04084 OMA:GDIQMEN ProtClustDB:CLSK878853
BioCyc:CJEJ195099:GJC0-723-MONOMER Uniprot:Q5HVG7
Length = 567
Score = 128 (50.1 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 49/178 (27%), Positives = 71/178 (39%)
Query: 118 FTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGK-SRAQIIGDSIAFSXXXXXXXX 176
F L FG GL+ SL+PC L ++P+ I A + K S+ S +
Sbjct: 168 FWILLSFFGYGLLLSLTPCILPMIPILSSLIVAKSNAKFSKKYSFFLSFIYVFFMSLAYA 227
Query: 177 XXXVGASFAGKAY-GQIGTGLPLAASGLA-IVMGLNLLEIIELQLPSFFDNFDPRAAAAN 234
V ASF G + G + + L L I + +LP F F + +
Sbjct: 228 IAGVIASFLGASIQGILQKPIILILFALIFIAFAFAMFGAFRFELPLRFQTFIHKKSEKG 287
Query: 235 FPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLL 292
V + G AL PC LA L Y+A + + L+GG+ L + G PLL
Sbjct: 288 -KGVVGIAIMGFLSALIVGPCVAAPLAGALIYIANTGNALLGGSALFIMSFGMGIPLL 344
>UNIPROTKB|Q81S91 [details] [associations]
symbol:ccdA1 "Cytochrome c-type biogenesis protein CcdA"
species:1392 "Bacillus anthracis" [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR003834 Pfam:PF02683 GO:GO:0016020
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0017004
GO:GO:0055114 HOGENOM:HOG000097105 KO:K06196 RefSeq:NP_844204.1
RefSeq:YP_018417.1 RefSeq:YP_027913.1 DNASU:1086300
EnsemblBacteria:EBBACT00000008298 EnsemblBacteria:EBBACT00000013522
EnsemblBacteria:EBBACT00000021429 GeneID:1086300 GeneID:2817027
GeneID:2848617 KEGG:ban:BA_1778 KEGG:bar:GBAA_1778 KEGG:bat:BAS1647
OMA:PGVMAYS ProtClustDB:CLSK916357
BioCyc:BANT260799:GJAJ-1718-MONOMER
BioCyc:BANT261594:GJ7F-1789-MONOMER Uniprot:Q81S91
Length = 237
Score = 119 (46.9 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 45/199 (22%), Positives = 87/199 (43%)
Query: 113 LSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFG-------SGKSRAQIIGDSI 165
++A T + ++ GAG+++ +SPC+L + P L YI G + I ++
Sbjct: 1 MNAADLT-IWLVAGAGVLSFISPCSLPLYPSYLSYITGVSIQDLKENRGIMQKSAIIHTV 59
Query: 166 AFSXXXXXXXXXXXVGASFAGKAYGQIGTGLPLAASGLAIV-MGLNLLEIIELQLPSFFD 224
F + S+ G + L G+ IV MGL + + + +
Sbjct: 60 FFMIGFSVIFYALGLSVSWIGITFSS-NQKLIQQIGGIFIVLMGLFMTGLFQPKWLMAEK 118
Query: 225 NFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLS-Y 283
R+ + + +++ L G+T+A +PC P+ + +L AT+ + G L ++ Y
Sbjct: 119 KVQYRSKSTGY---IRSILVGMTYAAGWTPCVGPIFSAVLMLGATNPE---GALLYITAY 172
Query: 284 TTGYVAPLLLAASFAGALQ 302
T G+ P + A F G ++
Sbjct: 173 TLGFAVPFFVMAFFIGKIK 191
>TIGR_CMR|BA_1778 [details] [associations]
symbol:BA_1778 "cytochrome c-type biogenesis protein CcdA"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0016021 "integral to
membrane" evidence=ISS] [GO:0017004 "cytochrome complex assembly"
evidence=ISS] [GO:0030435 "sporulation resulting in formation of a
cellular spore" evidence=ISS] InterPro:IPR003834 Pfam:PF02683
GO:GO:0016020 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0017004 GO:GO:0055114
HOGENOM:HOG000097105 KO:K06196 RefSeq:NP_844204.1
RefSeq:YP_018417.1 RefSeq:YP_027913.1 DNASU:1086300
EnsemblBacteria:EBBACT00000008298 EnsemblBacteria:EBBACT00000013522
EnsemblBacteria:EBBACT00000021429 GeneID:1086300 GeneID:2817027
GeneID:2848617 KEGG:ban:BA_1778 KEGG:bar:GBAA_1778 KEGG:bat:BAS1647
OMA:PGVMAYS ProtClustDB:CLSK916357
BioCyc:BANT260799:GJAJ-1718-MONOMER
BioCyc:BANT261594:GJ7F-1789-MONOMER Uniprot:Q81S91
Length = 237
Score = 119 (46.9 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 45/199 (22%), Positives = 87/199 (43%)
Query: 113 LSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFG-------SGKSRAQIIGDSI 165
++A T + ++ GAG+++ +SPC+L + P L YI G + I ++
Sbjct: 1 MNAADLT-IWLVAGAGVLSFISPCSLPLYPSYLSYITGVSIQDLKENRGIMQKSAIIHTV 59
Query: 166 AFSXXXXXXXXXXXVGASFAGKAYGQIGTGLPLAASGLAIV-MGLNLLEIIELQLPSFFD 224
F + S+ G + L G+ IV MGL + + + +
Sbjct: 60 FFMIGFSVIFYALGLSVSWIGITFSS-NQKLIQQIGGIFIVLMGLFMTGLFQPKWLMAEK 118
Query: 225 NFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLS-Y 283
R+ + + +++ L G+T+A +PC P+ + +L AT+ + G L ++ Y
Sbjct: 119 KVQYRSKSTGY---IRSILVGMTYAAGWTPCVGPIFSAVLMLGATNPE---GALLYITAY 172
Query: 284 TTGYVAPLLLAASFAGALQ 302
T G+ P + A F G ++
Sbjct: 173 TLGFAVPFFVMAFFIGKIK 191
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.134 0.385 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 325 301 0.00096 115 3 11 22 0.36 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 23
No. of states in DFA: 579 (62 KB)
Total size of DFA: 161 KB (2096 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 21.05u 0.09s 21.14t Elapsed: 00:00:01
Total cpu time: 21.05u 0.09s 21.14t Elapsed: 00:00:01
Start: Tue May 21 04:57:59 2013 End: Tue May 21 04:58:00 2013