Query 020530
Match_columns 325
No_of_seqs 184 out of 1170
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 03:07:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020530.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020530hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00293 dipZ thiol:disulfide 100.0 1.1E-29 2.4E-34 261.8 19.7 206 116-321 164-386 (571)
2 PF02683 DsbD: Cytochrome C bi 100.0 3.8E-29 8.3E-34 227.1 19.0 178 124-303 1-182 (211)
3 COG0785 CcdA Cytochrome c biog 100.0 5.6E-28 1.2E-32 222.8 20.7 182 118-303 10-191 (220)
4 COG4232 Thiol:disulfide interc 99.9 7.9E-25 1.7E-29 222.9 13.7 182 119-300 168-352 (569)
5 COG2836 Uncharacterized conser 99.9 3.8E-21 8.3E-26 176.6 18.4 180 121-307 6-197 (232)
6 PF13386 DsbD_2: Cytochrome C 99.9 1.2E-20 2.6E-25 170.2 16.0 173 124-307 2-183 (199)
7 PRK10019 nickel/cobalt efflux 98.3 0.00024 5.2E-09 68.3 21.8 181 107-298 6-233 (279)
8 PF11139 DUF2910: Protein of u 97.7 0.0021 4.5E-08 58.8 16.1 143 162-306 29-183 (214)
9 COG2215 ABC-type uncharacteriz 97.5 0.071 1.5E-06 51.9 23.5 179 118-306 55-265 (303)
10 PF02683 DsbD: Cytochrome C bi 97.3 0.0038 8.1E-08 56.8 11.8 88 122-212 118-210 (211)
11 COG0785 CcdA Cytochrome c biog 97.2 0.0028 6.1E-08 59.0 10.4 90 119-211 124-219 (220)
12 PRK00293 dipZ thiol:disulfide 96.7 0.007 1.5E-07 63.5 9.1 90 121-213 289-380 (571)
13 PF13386 DsbD_2: Cytochrome C 95.5 0.13 2.8E-06 46.5 10.1 82 120-209 117-198 (199)
14 PF01810 LysE: LysE type trans 95.3 1.1 2.3E-05 39.6 15.0 140 161-308 23-167 (191)
15 PF03824 NicO: High-affinity n 95.1 3.2 7E-05 39.4 19.8 65 119-191 3-67 (282)
16 PRK10019 nickel/cobalt efflux 93.4 0.95 2.1E-05 43.8 11.1 84 124-212 180-270 (279)
17 PF01914 MarC: MarC family int 93.1 3.5 7.6E-05 37.8 13.9 81 127-213 9-89 (203)
18 PRK10995 inner membrane protei 93.1 4.9 0.00011 37.2 15.0 86 121-212 7-92 (221)
19 PRK11111 hypothetical protein; 92.1 9.5 0.00021 35.4 15.5 82 125-212 13-94 (214)
20 TIGR00427 membrane protein, Ma 90.1 2.6 5.6E-05 38.7 9.6 81 126-212 11-91 (201)
21 PF09948 DUF2182: Predicted me 89.9 1.9 4E-05 39.6 8.4 101 161-261 36-143 (191)
22 COG4232 Thiol:disulfide interc 88.4 0.9 2E-05 47.9 5.9 90 119-214 288-382 (569)
23 PRK10739 putative antibiotic t 86.7 2.9 6.4E-05 38.3 7.6 80 127-212 9-88 (197)
24 COG2215 ABC-type uncharacteriz 85.0 12 0.00027 36.7 11.2 88 121-213 201-298 (303)
25 TIGR00802 nico high-affinity n 84.5 8.8 0.00019 37.3 9.9 163 123-290 3-195 (280)
26 PF09930 DUF2162: Predicted tr 82.3 45 0.00097 31.4 17.9 56 155-214 29-88 (224)
27 PRK10520 rhtB homoserine/homos 80.4 43 0.00094 30.0 19.0 81 123-213 8-92 (205)
28 COG2095 MarC Multiple antibiot 76.7 63 0.0014 29.9 14.0 80 128-213 13-92 (203)
29 PRK13747 putative mercury resi 74.6 7.8 0.00017 30.5 5.0 33 236-269 12-44 (78)
30 COG2836 Uncharacterized conser 68.4 53 0.0012 31.2 9.9 84 121-212 132-215 (232)
31 TIGR00948 2a75 L-lysine export 66.5 89 0.0019 27.3 15.7 87 164-257 22-112 (177)
32 PF03824 NicO: High-affinity n 62.7 98 0.0021 29.3 10.9 68 118-190 176-244 (282)
33 COG1280 RhtB Putative threonin 61.4 1.3E+02 0.0028 27.4 20.3 131 119-267 4-138 (208)
34 PF05977 MFS_3: Transmembrane 60.3 88 0.0019 32.7 10.9 101 82-188 60-169 (524)
35 PF04156 IncA: IncA protein; 57.4 71 0.0015 28.3 8.5 53 160-212 5-60 (191)
36 PRK10958 leucine export protei 54.4 1.7E+02 0.0037 26.6 20.0 51 163-213 42-96 (212)
37 PRK10229 threonine efflux syst 52.2 1.7E+02 0.0038 26.0 11.6 127 123-265 7-137 (206)
38 PF05052 MerE: MerE protein; 50.9 37 0.00079 26.7 4.7 30 238-268 14-43 (75)
39 TIGR00949 2A76 The Resistance 50.5 1.7E+02 0.0037 25.4 16.4 53 161-213 18-74 (185)
40 COG1279 Lysine efflux permease 49.2 1E+02 0.0022 28.7 8.2 77 129-212 117-199 (202)
41 PRK05151 electron transport co 48.8 2.2E+02 0.0048 26.2 11.7 59 242-306 101-159 (193)
42 TIGR03717 R_switched_YjbE inte 46.8 2.2E+02 0.0047 25.6 15.9 50 155-212 30-79 (176)
43 PRK09304 arginine exporter pro 46.0 2.3E+02 0.0049 25.6 17.9 117 121-256 5-125 (207)
44 COG5486 Predicted metal-bindin 36.8 3.6E+02 0.0079 26.1 9.9 120 133-256 97-226 (283)
45 COG1283 NptA Na+/phosphate sym 35.5 3.6E+02 0.0079 28.7 10.7 109 195-306 133-242 (533)
46 COG4657 RnfA Predicted NADH:ub 30.9 1.7E+02 0.0037 26.7 6.4 54 241-296 100-153 (193)
47 PF08611 DUF1774: Fungal prote 30.0 2.5E+02 0.0055 23.2 6.8 44 167-210 25-68 (97)
48 COG1280 RhtB Putative threonin 26.9 4.8E+02 0.01 23.6 9.5 89 123-212 112-204 (208)
49 PF01169 UPF0016: Uncharacteri 24.7 2.2E+02 0.0048 22.2 5.4 42 167-208 35-78 (78)
50 PRK12456 Na(+)-translocating N 22.2 1.6E+02 0.0035 27.3 4.8 59 242-306 108-166 (199)
No 1
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.97 E-value=1.1e-29 Score=261.83 Aligned_cols=206 Identities=26% Similarity=0.346 Sum_probs=166.7
Q ss_pred ccHHHHHHHHHHHHhhcCCCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--h
Q 020530 116 LSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQI--G 193 (325)
Q Consensus 116 ~s~~~l~~aFlaGLltslsPCvLpmlPi~la~i~~~~~~~sr~~~l~~~l~F~lG~i~ty~lLG~la~~lG~~l~~~--~ 193 (325)
..+..++.+|++|++++++||++||+|++.+++.+.+++++|++.+..++.|++|++++|+++|++++.+|..++.. +
T Consensus 164 ~~~~~l~~afl~Glll~l~PCvlP~lpi~~~~~~~~~~~~~~~~~~~~~l~y~lG~~~ty~~lG~~a~~~G~~~~~~~q~ 243 (571)
T PRK00293 164 SLPWSLLWFFLIGIGLAFTPCVLPMYPILSGIVLGGKQRLSTARALLLSFVYVQGMALTYTLLGLVVAAAGLQFQAALQH 243 (571)
T ss_pred cchHHHHHHHHHHHHHhccchhhHhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34678999999999999999999999999999876432245677888999999999999999999999999877643 3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhcccccc-CCchhhhhcCCCChhhhhHhhHhhhhccCCCChHHHHHHHHHHhccCC
Q 020530 194 TGLPLAASGLAIVMGLNLLEIIELQLPSFFD-NFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKD 272 (325)
Q Consensus 194 ~~l~ii~GvllIl~GL~lLg~~~l~lp~~~~-~l~~~~~~~~~~~~~gafllGll~GL~~~PC~~PvL~aiL~~Aaasgs 272 (325)
.++.++.+++++++|+.++|.+++++|.... +++...++.+.++..++|++|+++|++|+||++|++++++++++.+++
T Consensus 244 ~~~~~~~~~l~v~lgL~~~G~~~l~lp~~~~~~~~~~~~~~~~~~~~gaf~~G~l~~l~~~PC~~p~L~~~L~~aa~tg~ 323 (571)
T PRK00293 244 PYVLIGLSILFVLLALSMFGLFTLQLPSSLQTRLTLLSNRQQGGSLGGVFVMGAISGLICSPCTTAPLSGALLYIAQSGD 323 (571)
T ss_pred HHHHHHHHHHHHHHHHHHhcceeccCcHHHHHHhhhhhhcccCCchHhHHHHHHHHHHHhCCCchHHHHHHHHHHHccCc
Confidence 4677888999999999999998877765432 222222223456789999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-------h-hhh------hhHHhhhccccc
Q 020530 273 PLIGGTLLLSYTTGYVAPLLLAASFAGALQVVS-------C-LLG------LIYCVATTSPTW 321 (325)
Q Consensus 273 ~l~G~llml~FgLG~~lPLll~~~~~g~L~~l~-------~-l~~------~~~~~~~~~~~~ 321 (325)
++.|+++|++||+|+++|+++++.+.+++.... + ..| .+|++...+|++
T Consensus 324 ~~~g~~~l~~~gLG~~~Plll~~~~~~~~lpk~g~wm~~~k~~~G~~ll~~~~~ll~~~~~~~ 386 (571)
T PRK00293 324 LLLGGLTLYLLALGMGLPLILITTFGNKLLPKSGPWMNQVKTAFGFVLLALPVFLLERVLPGV 386 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999999999999999998887652211 1 112 666677777764
No 2
>PF02683 DsbD: Cytochrome C biogenesis protein transmembrane region; InterPro: IPR003834 DsbA and DsbC, periplasmic proteins of Escherichia coli, are two key players involved in disulphide bond formation. DsbD generates a reducing source in the periplasm, which is required for maintaining proper redox conditions []. DipZ is essential for maintaining cytochrome c apoproteins in the correct conformations for the covalent attachment of haem groups to the appropriate pairs of cysteine residues [].; GO: 0017004 cytochrome complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=99.97 E-value=3.8e-29 Score=227.12 Aligned_cols=178 Identities=42% Similarity=0.606 Sum_probs=150.6
Q ss_pred HHHHHHhhcCCCCccchHHHHHHHHhhcCCCcchhH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHH
Q 020530 124 IFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQ----IIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLA 199 (325)
Q Consensus 124 aFlaGLltslsPCvLpmlPi~la~i~~~~~~~sr~~----~l~~~l~F~lG~i~ty~lLG~la~~lG~~l~~~~~~l~ii 199 (325)
+|++|+++++|||++|++|++++++.+++++ +|++ .+..++.|.+|+.++|..+|..++.+|+.+++..++++++
T Consensus 1 af~aGll~~~sPC~lp~lp~~l~~~~~~~~~-~~~~~~~~~~~~~l~f~~G~~~~~~~lG~~~~~~g~~~~~~~~~~~~i 79 (211)
T PF02683_consen 1 AFLAGLLSSFSPCVLPVLPLYLSYIAGSGAS-SRRKGKRVALLLGLAFVLGFALVFALLGLGAGALGSFFGQISPWLYII 79 (211)
T ss_pred ChHHHHHHhcCcHHHHHHHHHHHHHhCCCcc-cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999865422 2222 4789999999999999999999999999998888899999
Q ss_pred HHHHHHHHHHHHHHHhhhhccccccCCchhhhhcCCCChhhhhHhhHhhhhccCCCChHHHHHHHHHHhccCChhHHHHH
Q 020530 200 ASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTL 279 (325)
Q Consensus 200 ~GvllIl~GL~lLg~~~l~lp~~~~~l~~~~~~~~~~~~~gafllGll~GL~~~PC~~PvL~aiL~~Aaasgs~l~G~ll 279 (325)
.|++++++|+.+++.++.+.+...+.. .+.+++++++..++|++|+.+|++|+||++|++.+++.++++++|+..|..+
T Consensus 80 ~g~~~i~~Gl~~l~~~~~~~l~~~~~~-~~~~~~~~~~~~gaf~lG~~~~l~~~PC~~p~l~~il~~a~~~~~~~~~~~l 158 (211)
T PF02683_consen 80 AGVLLILFGLSLLGLFEIPFLSRPRLG-LRSKRKSGGGLLGAFLLGLLFGLVWSPCTGPILAAILALAASSGSVLQGLLL 158 (211)
T ss_pred HHHHHHHHHHHHHHhhcchhhhhhhhh-hhhhcCCCCCcccHHHHHHHHHHHhhhcchHHHHHHHHHHHcCCchHHHHHH
Confidence 999999999999988774433322111 1112234456789999999999999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHH
Q 020530 280 LLSYTTGYVAPLLLAASFAGALQV 303 (325)
Q Consensus 280 ml~FgLG~~lPLll~~~~~g~L~~ 303 (325)
+++|++|+++|+++++.+.+++++
T Consensus 159 l~~y~lG~~lPll~~~~~~~~~~~ 182 (211)
T PF02683_consen 159 LLAYGLGFGLPLLLIGLFSGSLLR 182 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987763
No 3
>COG0785 CcdA Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.6e-28 Score=222.81 Aligned_cols=182 Identities=34% Similarity=0.529 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHHhhcCCCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHH
Q 020530 118 FTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLP 197 (325)
Q Consensus 118 ~~~l~~aFlaGLltslsPCvLpmlPi~la~i~~~~~~~sr~~~l~~~l~F~lG~i~ty~lLG~la~~lG~~l~~~~~~l~ 197 (325)
...+..+|++|+++++|||++|++|.++++..... .++|++.+.+++.|.+|..++|..+|+.++.+|+.+...+++++
T Consensus 10 ~~~~~~aflaGlls~lSPCilpllP~~l~~~~~~~-~~~r~~~~~~~l~FvlG~~~vf~~lG~~~~~~~~~~~~~~~~l~ 88 (220)
T COG0785 10 TVSILLAFLAGLLSFLSPCVLPLLPAYLSYLAGGS-LGARKSVLLASLLFVLGFATVFVLLGIGASGLGAFLPLNRLYLR 88 (220)
T ss_pred hhHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688999999999999999999999999987643 23377888999999999999999999999999999998888999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCchhhhhcCCCChhhhhHhhHhhhhccCCCChHHHHHHHHHHhccCChhHHH
Q 020530 198 LAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGG 277 (325)
Q Consensus 198 ii~GvllIl~GL~lLg~~~l~lp~~~~~l~~~~~~~~~~~~~gafllGll~GL~~~PC~~PvL~aiL~~Aaasgs~l~G~ 277 (325)
++.|++++++|+++++..+.+.+.+..+++.+ .+..+..++|.+|+.++++|+||.+|++.++++.++.+++...|.
T Consensus 89 ~i~gi~li~~Gl~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~f~lGl~f~~~wtPC~gPil~sil~laa~~~~~~~g~ 165 (220)
T COG0785 89 YIAGILLILLGLLFLGVLRLPLLLRFARFQLK---GKSVTALGAFLLGLLFALGWTPCIGPILGSILALAASTGSVVLGA 165 (220)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcchhhhc---cCCCcchhHHHHHHHHHHHhccchhHHHHHHHHHHhcCCcHHHHH
Confidence 99999999999999998876665544443221 235678999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHH
Q 020530 278 TLLLSYTTGYVAPLLLAASFAGALQV 303 (325)
Q Consensus 278 llml~FgLG~~lPLll~~~~~g~L~~ 303 (325)
.+|++|++|+++|+++++.+.++..+
T Consensus 166 ~ll~~Y~lGl~lP~~~~~~~~~~~~~ 191 (220)
T COG0785 166 LLLAAYALGLALPFLLLALLSGRALK 191 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999876
No 4
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.92 E-value=7.9e-25 Score=222.90 Aligned_cols=182 Identities=32% Similarity=0.496 Sum_probs=154.6
Q ss_pred HHHHHHHHHHHhhcCCCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-hh-hhH
Q 020530 119 TSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQ-IG-TGL 196 (325)
Q Consensus 119 ~~l~~aFlaGLltslsPCvLpmlPi~la~i~~~~~~~sr~~~l~~~l~F~lG~i~ty~lLG~la~~lG~~l~~-~~-~~l 196 (325)
.+++.+|++|++-.|+||++||+|+..+.+.+..++.+++|....+..|+.|+.++|+++|+.++..|..++. .| .|+
T Consensus 168 ~~ll~afl~GLlL~ftPCVLPmlpl~s~~v~g~~~~~s~~ra~~Ls~~yv~~mALay~~lgl~~~~~gl~~q~qLQ~P~v 247 (569)
T COG4232 168 WSLLLAFLGGLLLNFTPCVLPMLPLLSGIVLGSAKRASKARAFGLSFVYVQGMALAYTLLGLVAAAAGLGWQAQLQQPWV 247 (569)
T ss_pred HHHHHHHHHHHHHhhccHhhhhHHHHHHHHhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhHhHcccHH
Confidence 4599999999999999999999999999887654445666777889999999999999999999998877663 33 344
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccC-CchhhhhcCCCChhhhhHhhHhhhhccCCCChHHHHHHHHHHhccCChhH
Q 020530 197 PLAASGLAIVMGLNLLEIIELQLPSFFDN-FDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLI 275 (325)
Q Consensus 197 ~ii~GvllIl~GL~lLg~~~l~lp~~~~~-l~~~~~~~~~~~~~gafllGll~GL~~~PC~~PvL~aiL~~Aaasgs~l~ 275 (325)
-....+++++++++|+|.+++++|+..+. +....++.+.++..|+|++|++-+++.+||++|.++++|.|+++++|.+.
T Consensus 248 l~~la~lf~llALSMfGlFelqlP~s~q~~l~~~S~~~~gG~~~GaF~mG~La~Lv~sPCt~ppLa~aL~Yiaqsg~~~~ 327 (569)
T COG4232 248 LGGLAALFVLLALSMFGLFELQLPSSLQTRLTQQSNRASGGSIVGAFFMGALAGLVVSPCTAPPLAGALLYIAQSGNALL 327 (569)
T ss_pred HHHHHHHHHHHHHHhhhheeecCcHHHhhHHhhhhcccCCCchHHHHHHHHHHHHhcCcCcchhHHHHHHHHHhcchHHH
Confidence 45567788999999999999999986543 33333344555589999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH
Q 020530 276 GGTLLLSYTTGYVAPLLLAASFAGA 300 (325)
Q Consensus 276 G~llml~FgLG~~lPLll~~~~~g~ 300 (325)
|...+.++|+||++|+++++++..+
T Consensus 328 g~~~l~al~LGMg~Plllv~~f~~~ 352 (569)
T COG4232 328 GGLALYALGLGMGLPLLLIGVFGNR 352 (569)
T ss_pred HHHHHHHHHHhcccchhhheecccc
Confidence 9999999999999999999988843
No 5
>COG2836 Uncharacterized conserved protein [Function unknown]
Probab=99.87 E-value=3.8e-21 Score=176.59 Aligned_cols=180 Identities=23% Similarity=0.300 Sum_probs=140.1
Q ss_pred HHHHHHHHHhhcCCCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---hhhhHH
Q 020530 121 LAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQ---IGTGLP 197 (325)
Q Consensus 121 l~~aFlaGLltslsPCvLpmlPi~la~i~~~~~~~sr~~~l~~~l~F~lG~i~ty~lLG~la~~lG~~l~~---~~~~l~ 197 (325)
++.+|++|++++ .||+.+|.|+..++......+++++ .++.++.|++||+++|+++|++.+.+|..+.+ .+.+.+
T Consensus 6 ~l~~~~~g~lg~-gHC~gMCGGi~~afs~~~~~~~~~~-~~~~~~lyNlGRi~SYallG~i~G~lG~~l~~~~~~~~~l~ 83 (232)
T COG2836 6 FLGIFLLGLLGG-GHCLGMCGGIVLAFSLLIPSKVSSS-RLKLHLLYNLGRILSYALLGAILGALGVSLGQSAGLRGVLF 83 (232)
T ss_pred HHHHHHHHHhcC-ccHHHhcchHHHHHHHhccccchHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444888898877 5999999999988876543222322 38889999999999999999999999977654 456789
Q ss_pred HHHHHHHHHHHHHHHHH---hhh--hccccc----cCCchhhhhcCCCChhhhhHhhHhhhhccCCCChHHHHHHHHHHh
Q 020530 198 LAASGLAIVMGLNLLEI---IEL--QLPSFF----DNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVA 268 (325)
Q Consensus 198 ii~GvllIl~GL~lLg~---~~l--~lp~~~----~~l~~~~~~~~~~~~~gafllGll~GL~~~PC~~PvL~aiL~~Aa 268 (325)
+++|+++|++|+.++.. .+. ++|... +.+++. +..+.++..+.+++|+++| |.||. ++|+.+++|.
T Consensus 84 i~ag~~li~lGL~l~~~~~~~~~~~~~p~i~~~~~~~l~~~-r~l~~~~~~~~~~lG~~wG--~lPCG--lVYs~l~~A~ 158 (232)
T COG2836 84 IIAGALLIALGLYLLARGGMWSGALKLPFIGGFLWRLLKPI-RLLPLKPLPGALFLGMLWG--LLPCG--LVYSALAYAL 158 (232)
T ss_pred HHHHHHHHHHHHHHhcccchhhHHhhchhcchHHHHhhhhh-hccccCcchHHHHHHHHhc--ccchH--HHHHHHHHHH
Confidence 99999999999999532 221 223211 112210 1234455789999999999 56996 7888899999
Q ss_pred ccCChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Q 020530 269 TSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQVVSCL 307 (325)
Q Consensus 269 asgs~l~G~llml~FgLG~~lPLll~~~~~g~L~~l~~l 307 (325)
.++|+.+|+++|++||+||..+++..+.+.+++++..|.
T Consensus 159 ~tgS~~~Gal~mlaFGlGTlP~ll~~G~~s~~~s~~~r~ 197 (232)
T COG2836 159 STGSAFEGALVMLAFGLGTLPNLLAMGIFSSKLSKSSRK 197 (232)
T ss_pred HcCCHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988899999999999877664
No 6
>PF13386 DsbD_2: Cytochrome C biogenesis protein transmembrane region
Probab=99.86 E-value=1.2e-20 Score=170.23 Aligned_cols=173 Identities=27% Similarity=0.353 Sum_probs=127.3
Q ss_pred HHHHHHhhcCCCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh------hhHH
Q 020530 124 IFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIG------TGLP 197 (325)
Q Consensus 124 aFlaGLltslsPCvLpmlPi~la~i~~~~~~~sr~~~l~~~l~F~lG~i~ty~lLG~la~~lG~~l~~~~------~~l~ 197 (325)
+|+.|+++++ ||+.+|.|+..++..++ +| +.+ ..+.|++||+++|+++|++++.+|+.+.... ....
T Consensus 2 a~~~Gl~gs~-hC~~mCg~~~~~~~~~~----~~-~~~-~~l~y~~GRi~sY~llG~l~g~~G~~l~~~~~~~~l~~~~~ 74 (199)
T PF13386_consen 2 AFLLGLLGSL-HCIGMCGPIALALSLSQ----PK-RWL-RHLLYNLGRILSYTLLGALAGLLGSGLSLSGWLPGLRRIIG 74 (199)
T ss_pred HHHHHHHHhh-hHHHhHHHHHHHHhccC----cc-cHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 7899999999 99999999999986542 22 234 6899999999999999999999999886432 2334
Q ss_pred HHHHHHHHHHHHHHHHHhhhh-ccccccCCchhhhh-cCC-CChhhhhHhhHhhhhccCCCChHHHHHHHHHHhccCChh
Q 020530 198 LAASGLAIVMGLNLLEIIELQ-LPSFFDNFDPRAAA-ANF-PSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPL 274 (325)
Q Consensus 198 ii~GvllIl~GL~lLg~~~l~-lp~~~~~l~~~~~~-~~~-~~~~gafllGll~GL~~~PC~~PvL~aiL~~Aaasgs~l 274 (325)
++.+.+++++|+.++...+.+ .+...+...++.++ .++ ++..++|.+|+++|+. ||. +++.++..++.++|+.
T Consensus 75 ~~~~~~~l~~gl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~l~gll--PCg--~~y~~l~~A~~s~s~~ 150 (199)
T PF13386_consen 75 ILLGLLGLFLGLRLLGGPRLPKLGRLGHGLARRLQPLLRKLKGPWGAFLLGFLNGLL--PCG--PVYFALALAAASGSPL 150 (199)
T ss_pred HHHHHHHHHHHHHHHhccchhhHHhccHHHHHHhHHHHHhcCCccHHHHHHHHHHHh--HHH--HHHHHHHHHHHcCChH
Confidence 555556666677766322111 11000111111111 122 6788999999999975 994 5667788899999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Q 020530 275 IGGTLLLSYTTGYVAPLLLAASFAGALQVVSCL 307 (325)
Q Consensus 275 ~G~llml~FgLG~~lPLll~~~~~g~L~~l~~l 307 (325)
.|+++|++|++|+.+|+++++...+++++..+.
T Consensus 151 ~G~l~m~~FgLGT~p~ll~~~~~~~~l~~~~~~ 183 (199)
T PF13386_consen 151 YGALLMLAFGLGTLPALLLAGLLAGKLSRRLRR 183 (199)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988899999888888776653
No 7
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=98.28 E-value=0.00024 Score=68.33 Aligned_cols=181 Identities=18% Similarity=0.179 Sum_probs=116.0
Q ss_pred HHHHHhhccccHHHHHHHHHHHHhhcCCCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020530 107 EAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAG 186 (325)
Q Consensus 107 ~~v~~~l~~~s~~~l~~aFlaGLltslsPCvLpmlPi~la~i~~~~~~~sr~~~l~~~l~F~lG~i~ty~lLG~la~~lG 186 (325)
+++|+. .-+.-+..+|+.|++=.+.|=-.= .++.+|+.+. +++.++.+..++.-.++=+.+-.+++.+.-.+.
T Consensus 6 ~~~~~~---~~~~l~~~~f~yG~~HAlgPGHGK--avi~sYlv~~--~~~~~~a~~lgl~~~l~hta~~lv~~~~~~~l~ 78 (279)
T PRK10019 6 TLLQQG---NAWFFIPSAILLGALHGLEPGHSK--TMMAAFIIAI--KGTIKQAVMLGLAATISHTAVVWLIAFGGMYLS 78 (279)
T ss_pred HHHHcc---hHHHHHHHHHHHHHHHhcCCCcch--HHHhhhhhcC--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445544 236778889999999999886643 3456787653 345556677777777776665555655544445
Q ss_pred HHHHH--hhhhHHHHHHHHHHHHHHHHHHHh-hhhc-----cc--cccC---------------------------Cchh
Q 020530 187 KAYGQ--IGTGLPLAASGLAIVMGLNLLEII-ELQL-----PS--FFDN---------------------------FDPR 229 (325)
Q Consensus 187 ~~l~~--~~~~l~ii~GvllIl~GL~lLg~~-~l~l-----p~--~~~~---------------------------l~~~ 229 (325)
+.+.. ...++..+.+++++.+|+.++-+. +-+. +. .-+. .++.
T Consensus 79 ~~~~~~~~~~~le~~S~~lii~lGl~ll~r~~r~~~~~~~~~h~~~h~h~h~h~h~~~c~~~~~~~~~~~~gh~h~~~~~ 158 (279)
T PRK10019 79 RRFTAQSAEPWLQLISAVIIISTAFWMFWRTWRGERNWLENMHHHDHDHDHDHDHEHHHDHGHHHHHEHGATAEEYQDAH 158 (279)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCccCCCCCCCcCccccccccccccccccCCCCHH
Confidence 54442 456788899999999999998321 1100 00 0000 0000
Q ss_pred ---------hhhcC-CCChhhhhHhhHhhhhccCCCChHHHHHHHHHHhccCChhHHHHHHHHHHhhHHHHHHHHHHHH
Q 020530 230 ---------AAAAN-FPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFA 298 (325)
Q Consensus 230 ---------~~~~~-~~~~~gafllGll~GL~~~PC~~PvL~aiL~~Aaasgs~l~G~llml~FgLG~~lPLll~~~~~ 298 (325)
.+... ..+..+.+.+|+.-|+. ||.+.++. |..+.+.+.+..|+++.++|++|+++-+..++...
T Consensus 159 ~~~~a~~~r~~~~~~~~~~~~~l~igl~~Gl~--PCpgAl~V--LL~a~~lg~~~~Gi~~vlafslGtaltm~~vgll~ 233 (279)
T PRK10019 159 ERAHANDIKRRFDGREVTNGQILLFGLTGGLI--PCPAAITV--LLICIQLKALTLGATLVLSFSIGLALTLVTVGVGA 233 (279)
T ss_pred HhhccchhhhhhcccccccchhhHHHHHhccC--CCHHHHHH--HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 11223346889999975 99876554 44566778999999999999999999998888776
No 8
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=97.72 E-value=0.0021 Score=58.81 Aligned_cols=143 Identities=17% Similarity=0.085 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--------hhhhHHHHHHHHHHHHHHHHHHHhhhhccccccCCchhhhhc
Q 020530 162 GDSIAFSLGLATTLALLGVGASFAGKAYGQ--------IGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAA 233 (325)
Q Consensus 162 ~~~l~F~lG~i~ty~lLG~la~~lG~~l~~--------~~~~l~ii~GvllIl~GL~lLg~~~l~lp~~~~~l~~~~~~~ 233 (325)
.+.++|.+|...+|...|++.-........ ...++.++.|++++++|...+..-+ -+....+..+...+.
T Consensus 29 ~~~~af~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lGv~ll~~a~~~~~~~~--~~~~~~~~~~~~~~~ 106 (214)
T PF11139_consen 29 RNLLAFLAGWFLGYLAVGLVLLFGLDALPSGSSSAPSPVVGWLQLVLGVLLLLLAVRVWRRRP--RPDPPSRPPRWLARL 106 (214)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCccHHHHHHHHHHHHHHHHHHHHhhccc--ccCCCCCchhhhhhh
Confidence 457999999999999999988766655441 2245677888888888887763320 011111111111222
Q ss_pred CCCChhhhhHhhHhhhhccCCCChHHHHHHHHHHhccCChhHHHHHHHHHHhhHHHHH----HHHHHHHHHHHHHHh
Q 020530 234 NFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPL----LLAASFAGALQVVSC 306 (325)
Q Consensus 234 ~~~~~~gafllGll~GL~~~PC~~PvL~aiL~~Aaasgs~l~G~llml~FgLG~~lPL----ll~~~~~g~L~~l~~ 306 (325)
+.....+.+.+|+..++.-.+...|++.++.......-++..-...+..|.+-+..|. +.......+.++.++
T Consensus 107 ~~~~~~~~~~lg~~~~~~~~~~~~~~laa~~~I~~~~~~~~~~~~~l~~y~~i~~~~~~~pll~~~~~~~r~~~~l~ 183 (214)
T PF11139_consen 107 DSASPGGAFWLGFVLGLANPKTMLPYLAAIAIIAASGLSPGTQVVALVVYCLIASLPALLPLLAYLVAPERAEPWLE 183 (214)
T ss_pred hcCCchhHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3455677899999999988888777776665555666666777888888888777664 333344555544444
No 9
>COG2215 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=97.48 E-value=0.071 Score=51.88 Aligned_cols=179 Identities=23% Similarity=0.233 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHhhcCCCCccchHHHHHHHHhhcCCCcchhHHHHHHHH--HHHHHHHHHHHHHHHHHHH-hHH--HHHh
Q 020530 118 FTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIA--FSLGLATTLALLGVGASFA-GKA--YGQI 192 (325)
Q Consensus 118 ~~~l~~aFlaGLltslsPCvLpmlPi~la~i~~~~~~~sr~~~l~~~l~--F~lG~i~ty~lLG~la~~l-G~~--l~~~ 192 (325)
++.+...|+-|++-.+.|=-.=. +..+|+.+.+ .+-++.+..+++ ..=|. +.+.+++++.+.. +.. +...
T Consensus 55 w~li~~SflyGvlHAlgPGHgKa--viasylia~~--~~lk~~ilLsf~~sllqG~-~Av~l~~~~~~v~~~~s~~~~~s 129 (303)
T COG2215 55 WTLIPLSFLYGVLHALGPGHGKA--VIATYLIAHK--ATLKRAILLSFLASLLQGL-TAVVLLLAFLGVLRLSSITFALS 129 (303)
T ss_pred HHHHHHHHHHHHHhccCCCcchH--HHHHHHHhcc--cchhHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHhhhhHHhhh
Confidence 57888999999999999877442 2456766532 222233322222 11122 2233333333322 232 2345
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH-hh-h--hccc--ccc---------------------CCchhhhhcCCCChhhhhHhh
Q 020530 193 GTGLPLAASGLAIVMGLNLLEI-IE-L--QLPS--FFD---------------------NFDPRAAAANFPSSVQAYLAG 245 (325)
Q Consensus 193 ~~~l~ii~GvllIl~GL~lLg~-~~-l--~lp~--~~~---------------------~l~~~~~~~~~~~~~gafllG 245 (325)
..++.++..++++.+|+.++=+ .+ . +-|. ... ..|++. ..+.......+..|
T Consensus 130 ~~~lE~~S~~Ll~~~G~w~~~r~lr~l~~~~~~~~~~~~~~~~~~~h~H~~~~~Cgh~H~~d~~~-~~~~~~~~~~~~~~ 208 (303)
T COG2215 130 EPWLELISFLLLILLGLWLLWRTLRRLRHRHPKHPHFAAHPHPDHDHDHHYQCACGHAHAPDPKR-LGQAVDWKQQWLFG 208 (303)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccccCCCcccCCccccccccccccCCChHH-hcccccHHHHHHHH
Confidence 5778888888999999888721 11 1 0011 000 011111 11223344568888
Q ss_pred HhhhhccCCCChHHHHHHHHHHhccCChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 020530 246 LTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQVVSC 306 (325)
Q Consensus 246 ll~GL~~~PC~~PvL~aiL~~Aaasgs~l~G~llml~FgLG~~lPLll~~~~~g~L~~l~~ 306 (325)
+..|+ .||.+.+.. |..+.+.+-+..|++.-+++++|+++++-.++...-..|....
T Consensus 209 l~~GL--rPCpgAi~V--Llfal~~gl~~~Gil~VlamS~GtalTvs~lA~~av~ak~~a~ 265 (303)
T COG2215 209 LTGGL--RPCPGAIFV--LLFALSLGLYTLGILSVLAMSIGTALTVSALALLAVTAKNTAV 265 (303)
T ss_pred HHhcC--ccCcHHHHH--HHHHHHhchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 88886 599976543 5667777889999999999999999998777776666554443
No 10
>PF02683 DsbD: Cytochrome C biogenesis protein transmembrane region; InterPro: IPR003834 DsbA and DsbC, periplasmic proteins of Escherichia coli, are two key players involved in disulphide bond formation. DsbD generates a reducing source in the periplasm, which is required for maintaining proper redox conditions []. DipZ is essential for maintaining cytochrome c apoproteins in the correct conformations for the covalent attachment of haem groups to the appropriate pairs of cysteine residues [].; GO: 0017004 cytochrome complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=97.29 E-value=0.0038 Score=56.85 Aligned_cols=88 Identities=27% Similarity=0.288 Sum_probs=65.5
Q ss_pred HHHHHHHHhhcC--CCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHhhhhH
Q 020530 122 AVIFGAGLVTSL--SPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKA---YGQIGTGL 196 (325)
Q Consensus 122 ~~aFlaGLltsl--sPCvLpmlPi~la~i~~~~~~~sr~~~l~~~l~F~lG~i~ty~lLG~la~~lG~~---l~~~~~~l 196 (325)
..+|+.|+..++ +||+.|++-.++.+...+ ++..+....-+.|.+|+.+-+.+++.....+.+. +..+.+++
T Consensus 118 ~gaf~lG~~~~l~~~PC~~p~l~~il~~a~~~---~~~~~~~~ll~~y~lG~~lPll~~~~~~~~~~~~~~~~~~~~~~i 194 (211)
T PF02683_consen 118 LGAFLLGLLFGLVWSPCTGPILAAILALAASS---GSVLQGLLLLLAYGLGFGLPLLLIGLFSGSLLRRLRKLRRWSRWI 194 (211)
T ss_pred ccHHHHHHHHHHHhhhcchHHHHHHHHHHHcC---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555554422 699999998888887643 2333556677899999999999999888876633 34566778
Q ss_pred HHHHHHHHHHHHHHHH
Q 020530 197 PLAASGLAIVMGLNLL 212 (325)
Q Consensus 197 ~ii~GvllIl~GL~lL 212 (325)
+.+.|++++.+|+.++
T Consensus 195 ~~~~G~lli~~g~~~l 210 (211)
T PF02683_consen 195 KRISGILLIALGLYLL 210 (211)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999874
No 11
>COG0785 CcdA Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0028 Score=58.96 Aligned_cols=90 Identities=26% Similarity=0.270 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHhhcC--CCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHh
Q 020530 119 TSLAVIFGAGLVTSL--SPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGK----AYGQI 192 (325)
Q Consensus 119 ~~l~~aFlaGLltsl--sPCvLpmlPi~la~i~~~~~~~sr~~~l~~~l~F~lG~i~ty~lLG~la~~lG~----~l~~~ 192 (325)
.+....|+.|+..++ +||+.|.+...+...... ++-.+.......|++|..+.|..++...+.+.+ .+..+
T Consensus 124 ~~~~~~f~lGl~f~~~wtPC~gPil~sil~laa~~---~~~~~g~~ll~~Y~lGl~lP~~~~~~~~~~~~~~~~~~l~k~ 200 (220)
T COG0785 124 VTALGAFLLGLLFALGWTPCIGPILGSILALAAST---GSVVLGALLLAAYALGLALPFLLLALLSGRALKAFSRKLRRH 200 (220)
T ss_pred CcchhHHHHHHHHHHHhccchhHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777776544 699999998888776542 233456778899999999999999999887776 33456
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 020530 193 GTGLPLAASGLAIVMGLNL 211 (325)
Q Consensus 193 ~~~l~ii~GvllIl~GL~l 211 (325)
.+.+..+.|++++++|+.+
T Consensus 201 ~~~i~~~~G~lli~~Gv~l 219 (220)
T COG0785 201 SGAIEIVGGALLILLGLLL 219 (220)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 6778999999999999865
No 12
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=96.70 E-value=0.007 Score=63.49 Aligned_cols=90 Identities=22% Similarity=0.172 Sum_probs=64.6
Q ss_pred HHHHHHHHHhhcCC--CCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHH
Q 020530 121 LAVIFGAGLVTSLS--PCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPL 198 (325)
Q Consensus 121 l~~aFlaGLltsls--PCvLpmlPi~la~i~~~~~~~sr~~~l~~~l~F~lG~i~ty~lLG~la~~lG~~l~~~~~~l~i 198 (325)
+..+|+.|++.++. ||+.|.+...+.+.... .+-......-++|.+|+..-|.++|...+.+-...+.+...+..
T Consensus 289 ~~gaf~~G~l~~l~~~PC~~p~L~~~L~~aa~t---g~~~~g~~~l~~~gLG~~~Plll~~~~~~~~lpk~g~wm~~~k~ 365 (571)
T PRK00293 289 LGGVFVMGAISGLICSPCTTAPLSGALLYIAQS---GDLLLGGLTLYLLALGMGLPLILITTFGNKLLPKSGPWMNQVKT 365 (571)
T ss_pred hHhHHHHHHHHHHHhCCCchHHHHHHHHHHHcc---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHH
Confidence 56788889988776 99999888888886532 23334455668899999999999987653221111233345678
Q ss_pred HHHHHHHHHHHHHHH
Q 020530 199 AASGLAIVMGLNLLE 213 (325)
Q Consensus 199 i~GvllIl~GL~lLg 213 (325)
+.|++++.+|+.++.
T Consensus 366 ~~G~~ll~~~~~ll~ 380 (571)
T PRK00293 366 AFGFVLLALPVFLLE 380 (571)
T ss_pred HHHHHHHHHHHHHHH
Confidence 899999999999874
No 13
>PF13386 DsbD_2: Cytochrome C biogenesis protein transmembrane region
Probab=95.53 E-value=0.13 Score=46.46 Aligned_cols=82 Identities=24% Similarity=0.183 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhhcCCCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHH
Q 020530 120 SLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLA 199 (325)
Q Consensus 120 ~l~~aFlaGLltslsPCvLpmlPi~la~i~~~~~~~sr~~~l~~~l~F~lG~i~ty~lLG~la~~lG~~l~~~~~~l~ii 199 (325)
.....|..|++.++.||- ++.+....... ..+-.+....-+.|.+|.+..+..+|.+...+++... +.+..+
T Consensus 117 ~~~~~~~lG~l~gllPCg-~~y~~l~~A~~----s~s~~~G~l~m~~FgLGT~p~ll~~~~~~~~l~~~~~---~~~~r~ 188 (199)
T PF13386_consen 117 GPWGAFLLGFLNGLLPCG-PVYFALALAAA----SGSPLYGALLMLAFGLGTLPALLLAGLLAGKLSRRLR---RRLLRL 188 (199)
T ss_pred CccHHHHHHHHHHHhHHH-HHHHHHHHHHH----cCChHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 356788889999999995 44444332222 1244466778899999999999999988877766544 233347
Q ss_pred HHHHHHHHHH
Q 020530 200 ASGLAIVMGL 209 (325)
Q Consensus 200 ~GvllIl~GL 209 (325)
.+++++++|+
T Consensus 189 ~g~~~i~~G~ 198 (199)
T PF13386_consen 189 AGVLLIILGI 198 (199)
T ss_pred HHHHHHHHHH
Confidence 7888888876
No 14
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=95.28 E-value=1.1 Score=39.59 Aligned_cols=140 Identities=17% Similarity=0.088 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHH-H---HhhhhHHHHHHHHHHHHHHHHHHHhhhhccccccCCchhhhhcCCC
Q 020530 161 IGDSIAFSLGLATTLALLGVGASFAGKAY-G---QIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFP 236 (325)
Q Consensus 161 l~~~l~F~lG~i~ty~lLG~la~~lG~~l-~---~~~~~l~ii~GvllIl~GL~lLg~~~l~lp~~~~~l~~~~~~~~~~ 236 (325)
.+.++.+.+|..+...+...++...-..+ . ....++.++.+..++.+|..++..-+ +.. .++ .+..+..
T Consensus 23 ~~~~~~~~~G~~~~~~i~~~~~~~g~~~l~~~~~~~~~~l~~~G~~~L~~lg~~~~~~~~----~~~--~~~-~~~~~~~ 95 (191)
T PF01810_consen 23 FKAGLPVALGAALGDLIYILLAVFGLSALLKSSPWLFMILKLLGALYLLYLGYKLLRSKF----SSK--SST-QSEAKKQ 95 (191)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhccc----Ccc--hhh-hhhhccc
Confidence 45578888888888888876665433333 2 34456788888889999998873211 000 000 0011134
Q ss_pred ChhhhhHhhHhhhhccCCCChHHHHHHHHHHhc-cCChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Q 020530 237 SSVQAYLAGLTFALAASPCSTPVLATLLGYVAT-SKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQVVSCLL 308 (325)
Q Consensus 237 ~~~gafllGll~GL~~~PC~~PvL~aiL~~Aaa-sgs~l~G~llml~FgLG~~lPLll~~~~~g~L~~l~~l~ 308 (325)
+....|..|+...+. -|=+-+...+++..... ..+...-....+...++....+...+...++.++..+.+
T Consensus 96 ~~~~~f~~g~~~~~~-NPk~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 167 (191)
T PF01810_consen 96 SKSKSFLTGFLLNLL-NPKAILFWLAVFPQFISPEYSSTQFLVFILGIFLGSLLWFLLLALLGSRLRRKFSSR 167 (191)
T ss_pred cHHHHHHHHHHHHHH-hHHHHHHHHHhhhcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 566778888888874 56554444444443333 222233344445666666677778888888887777654
No 15
>PF03824 NicO: High-affinity nickel-transport protein; InterPro: IPR011541 High affinity nickel transporters are involved in the incorporation of nickel into H2-uptake hydrogenase [, ] and urease [] enzymes and are essential for the expression of catalytically active hydrogenase and urease. Ion uptake is dependent on proton motive force. HoxN in Ralstonia eutropha (Alcaligenes eutrophus) is thought to be an integral membrane protein with seven transmembrane helices []. The family also includes a cobalt transporter. ; GO: 0046872 metal ion binding, 0030001 metal ion transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=95.07 E-value=3.2 Score=39.40 Aligned_cols=65 Identities=18% Similarity=0.216 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhhcCCCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 020530 119 TSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQ 191 (325)
Q Consensus 119 ~~l~~aFlaGLltslsPCvLpmlPi~la~i~~~~~~~sr~~~l~~~l~F~lG~i~ty~lLG~la~~lG~~l~~ 191 (325)
..+.++|+.|+.=.+.|=-+-.+ ..+|..+. ++..+.++.+.+|-.++-.+.++++..++..+.+
T Consensus 3 ~ll~laf~~G~~HAl~PgH~kai--~~~~~~~~------~~~~~~g~~~~lg~s~~~~~~ai~lv~~~~~~~~ 67 (282)
T PF03824_consen 3 SLLLLAFLYGLLHALGPGHGKAI--IASYLLSS------RRALRVGLFFGLGHSLTHGLSAILLVLLALWLSE 67 (282)
T ss_pred HHHHHHHHHHHHHccCCChHHHH--HHHHHhhc------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56788999999999999777666 55665532 2234568888888888888888777766655543
No 16
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=93.43 E-value=0.95 Score=43.83 Aligned_cols=84 Identities=27% Similarity=0.313 Sum_probs=59.7
Q ss_pred HHHHHHhhcCCCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HH---HHhh---hhH
Q 020530 124 IFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGK-AY---GQIG---TGL 196 (325)
Q Consensus 124 aFlaGLltslsPCvLpmlPi~la~i~~~~~~~sr~~~l~~~l~F~lG~i~ty~lLG~la~~lG~-~l---~~~~---~~l 196 (325)
.+..|+..++-||...+.-+++++..+ .-...+...++|.+|.+.+.+.+|.+++...+ .. .... +..
T Consensus 180 ~l~igl~~Gl~PCpgAl~VLL~a~~lg-----~~~~Gi~~vlafslGtaltm~~vgll~~~~~r~~~~~~~~~~~~~~~~ 254 (279)
T PRK10019 180 ILLFGLTGGLIPCPAAITVLLICIQLK-----ALTLGATLVLSFSIGLALTLVTVGVGAAISVQQAAKRWSGFNTLARRA 254 (279)
T ss_pred hhHHHHHhccCCCHHHHHHHHHHHHhc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 356677778889987777666665442 23356788999999999999999998754332 21 1122 345
Q ss_pred HHHHHHHHHHHHHHHH
Q 020530 197 PLAASGLAIVMGLNLL 212 (325)
Q Consensus 197 ~ii~GvllIl~GL~lL 212 (325)
+++.+++.+++|+.+.
T Consensus 255 p~~s~~l~i~~G~~~~ 270 (279)
T PRK10019 255 PYFSSLLIGLVGVYMG 270 (279)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6999999999999775
No 17
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=93.11 E-value=3.5 Score=37.83 Aligned_cols=81 Identities=17% Similarity=0.270 Sum_probs=54.8
Q ss_pred HHHhhcCCCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHHHHHH
Q 020530 127 AGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIV 206 (325)
Q Consensus 127 aGLltslsPCvLpmlPi~la~i~~~~~~~sr~~~l~~~l~F~lG~i~ty~lLG~la~~lG~~l~~~~~~l~ii~GvllIl 206 (325)
..+...++| +..+|++++...+. +.++|++..++...+.....+.|...|-..- +.++--.+.+++..|+++.+
T Consensus 9 ~~lf~iinP--~g~ip~f~~lt~~~-~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL---~~fgIsl~af~IaGGiiL~~ 82 (203)
T PF01914_consen 9 ITLFAIINP--IGNIPIFLSLTKGM-SPKERRRIARRASIIAFIILLIFAFFGQLIL---NFFGISLPAFRIAGGIILFL 82 (203)
T ss_pred HHHHHHHhH--HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCCHHHHHHHHHHHHHH
Confidence 345555555 46789888887654 3456667777887777777777766664321 22332335689999999999
Q ss_pred HHHHHHH
Q 020530 207 MGLNLLE 213 (325)
Q Consensus 207 ~GL~lLg 213 (325)
+|+.++.
T Consensus 83 ia~~ml~ 89 (203)
T PF01914_consen 83 IALEMLF 89 (203)
T ss_pred HHHHHhC
Confidence 9999984
No 18
>PRK10995 inner membrane protein; Provisional
Probab=93.06 E-value=4.9 Score=37.24 Aligned_cols=86 Identities=17% Similarity=0.224 Sum_probs=57.6
Q ss_pred HHHHHHHHHhhcCCCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHH
Q 020530 121 LAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAA 200 (325)
Q Consensus 121 l~~aFlaGLltslsPCvLpmlPi~la~i~~~~~~~sr~~~l~~~l~F~lG~i~ty~lLG~la~~lG~~l~~~~~~l~ii~ 200 (325)
+..-...++....+| +..+|++++...+. +.++|++..++...+.......+...|-.+- +.++-..+.+++..
T Consensus 7 ~~~~~~~~lf~iinP--~g~~pif~~lt~~~-~~~~r~~ia~~~~~~a~~ill~f~~~G~~il---~~fgIs~~a~rIaG 80 (221)
T PRK10995 7 AIGLGLVVLLPLANP--LTTVALFLGLSGNM-TPEERNRQALMASVYVFAIMMVAFYAGQLVM---STFGISIPGLRIAG 80 (221)
T ss_pred HHHHHHHHHHHHhch--hhhHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCCCHHHHHHHH
Confidence 333445567777766 56889999987654 3345666667777777766666666654321 22333346789999
Q ss_pred HHHHHHHHHHHH
Q 020530 201 SGLAIVMGLNLL 212 (325)
Q Consensus 201 GvllIl~GL~lL 212 (325)
|+++..+|+.++
T Consensus 81 GilL~~igi~ml 92 (221)
T PRK10995 81 GLIVAFIGFRML 92 (221)
T ss_pred HHHHHHHHHHHh
Confidence 999999999997
No 19
>PRK11111 hypothetical protein; Provisional
Probab=92.08 E-value=9.5 Score=35.43 Aligned_cols=82 Identities=15% Similarity=0.186 Sum_probs=55.3
Q ss_pred HHHHHhhcCCCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHHHH
Q 020530 125 FGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLA 204 (325)
Q Consensus 125 FlaGLltslsPCvLpmlPi~la~i~~~~~~~sr~~~l~~~l~F~lG~i~ty~lLG~la~~lG~~l~~~~~~l~ii~Gvll 204 (325)
....+...++| ...+|++++...+. +.++|++..++...+.......|...|-.. =+.++--.+.+++..|+++
T Consensus 13 ~~~~Lf~iinP--ig~ipiflslt~~~-s~~~r~~ia~~a~l~a~~ill~f~~~G~~i---L~~fGIsl~afrIaGGiiL 86 (214)
T PRK11111 13 FFIGLFALVNP--VGILPVFISMTSHQ-TAAERNKTNLTANLSVAIILLISLFLGDFI---LNLFGISIDSFRIAGGILV 86 (214)
T ss_pred HHHHHHHHhCc--chhHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhCCCHHHHHHHHHHHH
Confidence 34466666666 56889999987654 345566667777777777776666665322 1122222356899999999
Q ss_pred HHHHHHHH
Q 020530 205 IVMGLNLL 212 (325)
Q Consensus 205 Il~GL~lL 212 (325)
..+|+.|+
T Consensus 87 ~~ial~Ml 94 (214)
T PRK11111 87 VTIAMSMI 94 (214)
T ss_pred HHHHHHHh
Confidence 99999997
No 20
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=90.07 E-value=2.6 Score=38.68 Aligned_cols=81 Identities=15% Similarity=0.258 Sum_probs=56.5
Q ss_pred HHHHhhcCCCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHHHHH
Q 020530 126 GAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAI 205 (325)
Q Consensus 126 laGLltslsPCvLpmlPi~la~i~~~~~~~sr~~~l~~~l~F~lG~i~ty~lLG~la~~lG~~l~~~~~~l~ii~GvllI 205 (325)
...+...++| +..+|++++...+. +.++|++...+...+.......|...|-.. + +.++--.+.+++..|+++.
T Consensus 11 ~~~Lf~iinP--ig~ipvfl~lt~~~-~~~~r~~ia~~~~l~a~~ill~f~~~G~~i--L-~~fgIsl~afrIaGGiiL~ 84 (201)
T TIGR00427 11 FISLFAIINP--IGNIPIFISLTEYY-TAAERNKIAKKANISSFIILLIFLVFGDTI--L-KLFGISIDAFRIAGGILLF 84 (201)
T ss_pred HHHHHHHhCc--chHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HHhCCCHHHHHHHHHHHHH
Confidence 3455566666 56889999987654 344566677778778777777777776532 1 2333334568999999999
Q ss_pred HHHHHHH
Q 020530 206 VMGLNLL 212 (325)
Q Consensus 206 l~GL~lL 212 (325)
.+|+.++
T Consensus 85 ~ia~~ml 91 (201)
T TIGR00427 85 TIAMDML 91 (201)
T ss_pred HHHHHHh
Confidence 9999997
No 21
>PF09948 DUF2182: Predicted metal-binding integral membrane protein (DUF2182); InterPro: IPR018688 This family of various hypothetical bacterial membrane proteins having predicted metal-binding properties has no known function.
Probab=89.86 E-value=1.9 Score=39.60 Aligned_cols=101 Identities=16% Similarity=0.118 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh-------hhHHHHHHHHHHHHHHHHHHHhhhhccccccCCchhhhhc
Q 020530 161 IGDSIAFSLGLATTLALLGVGASFAGKAYGQIG-------TGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAA 233 (325)
Q Consensus 161 l~~~l~F~lG~i~ty~lLG~la~~lG~~l~~~~-------~~l~ii~GvllIl~GL~lLg~~~l~lp~~~~~l~~~~~~~ 233 (325)
......|..|-..+-...|+++..+...++... +.-+++.+.++++-|+..+..+|-.=.+.-++...-....
T Consensus 36 ~~~~~~f~~GYl~vW~~~g~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~Ll~AG~yQ~sp~K~~cL~~Cr~p~~f~~~~ 115 (191)
T PF09948_consen 36 ARSTALFVAGYLAVWLAFGLVATALQWALHQLALLSPMMASASPWLAGAVLLAAGLYQFSPLKQACLNHCRSPLSFLAFH 115 (191)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhhhhhhHHHHHHHHHHHHHhccHHHHHHHHHCCCcchHhhcC
Confidence 456789999999999999999887766655321 1235778888888999888655432111111111001112
Q ss_pred CCCChhhhhHhhHhhhhccCCCChHHHH
Q 020530 234 NFPSSVQAYLAGLTFALAASPCSTPVLA 261 (325)
Q Consensus 234 ~~~~~~gafllGll~GL~~~PC~~PvL~ 261 (325)
.+.+..+++-+|+-.|+--..|+-+...
T Consensus 116 wr~g~~~alr~Gl~hG~~CvGCCWaLMl 143 (191)
T PF09948_consen 116 WRAGARGALRMGLRHGLYCVGCCWALML 143 (191)
T ss_pred CCcccchHHHHHHHHccHHHHHHHHHHH
Confidence 3445788999999999988888865443
No 22
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=88.38 E-value=0.9 Score=47.91 Aligned_cols=90 Identities=26% Similarity=0.218 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHhhcC--CCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---hh
Q 020530 119 TSLAVIFGAGLVTSL--SPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQ---IG 193 (325)
Q Consensus 119 ~~l~~aFlaGLltsl--sPCvLpmlPi~la~i~~~~~~~sr~~~l~~~l~F~lG~i~ty~lLG~la~~lG~~l~~---~~ 193 (325)
-.+..+|..|.++.+ +||+-|-+...+.|+...+ +--.....-.++.+|+.+=|.++|+.- ++.+-. +.
T Consensus 288 G~~~GaF~mG~La~Lv~sPCt~ppLa~aL~Yiaqsg---~~~~g~~~l~al~LGMg~Plllv~~f~---~~~LPk~G~WM 361 (569)
T COG4232 288 GSIVGAFFMGALAGLVVSPCTAPPLAGALLYIAQSG---NALLGGLALYALGLGMGLPLLLIGVFG---NRLLPKPGPWM 361 (569)
T ss_pred CchHHHHHHHHHHHHhcCcCcchhHHHHHHHHHhcc---hHHHHHHHHHHHHHhcccchhhheecc---cccCCCCCcHH
Confidence 347778888888744 7999999999999987532 122334445667788888888887643 444433 33
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 020530 194 TGLPLAASGLAIVMGLNLLEI 214 (325)
Q Consensus 194 ~~l~ii~GvllIl~GL~lLg~ 214 (325)
+.+..+.|.+|....+.++.+
T Consensus 362 ~~vK~~fGFvlLa~aiwLl~~ 382 (569)
T COG4232 362 NTVKQAFGFVLLATAIWLLWR 382 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445677888887777777644
No 23
>PRK10739 putative antibiotic transporter; Provisional
Probab=86.66 E-value=2.9 Score=38.35 Aligned_cols=80 Identities=13% Similarity=0.224 Sum_probs=53.4
Q ss_pred HHHhhcCCCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHHHHHH
Q 020530 127 AGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIV 206 (325)
Q Consensus 127 aGLltslsPCvLpmlPi~la~i~~~~~~~sr~~~l~~~l~F~lG~i~ty~lLG~la~~lG~~l~~~~~~l~ii~GvllIl 206 (325)
..+....+| +..+|++++...+. +.++|++..++...+.......|...|-..- +.++--.+.+++..|+++..
T Consensus 9 ~~Lf~iinP--ig~ipiflslt~~~-~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL---~~fGIsl~afrIAGGilL~~ 82 (197)
T PRK10739 9 VLLILIMDP--LGNLPIFMSVLKHL-EPKRRRAIMIRELLIALLVMLVFLFAGEKIL---AFLNLRTETVSISGGIILFL 82 (197)
T ss_pred HHHHHHHhH--hhHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCCHHHHHHHHHHHHHH
Confidence 345555555 56889999987654 3445666677777777776666666654221 22332335689999999999
Q ss_pred HHHHHH
Q 020530 207 MGLNLL 212 (325)
Q Consensus 207 ~GL~lL 212 (325)
+|+.++
T Consensus 83 ial~ml 88 (197)
T PRK10739 83 IAIKMI 88 (197)
T ss_pred HHHHHh
Confidence 999997
No 24
>COG2215 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=85.02 E-value=12 Score=36.67 Aligned_cols=88 Identities=24% Similarity=0.244 Sum_probs=61.0
Q ss_pred HHHHHHHHHhhcCCCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---------
Q 020530 121 LAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQ--------- 191 (325)
Q Consensus 121 l~~aFlaGLltslsPCvLpmlPi~la~i~~~~~~~sr~~~l~~~l~F~lG~i~ty~lLG~la~~lG~~l~~--------- 191 (325)
.-..+..|+..++-||...+.-+.+++..+. ....+...+++.+|...+-+.++.++-..-+..-.
T Consensus 201 ~~~~~~~~l~~GLrPCpgAi~VLlfal~~gl-----~~~Gil~VlamS~GtalTvs~lA~~av~ak~~a~~~~g~~~~~~ 275 (303)
T COG2215 201 WKQQWLFGLTGGLRPCPGAIFVLLFALSLGL-----YTLGILSVLAMSIGTALTVSALALLAVTAKNTAVRLSGFRTLAK 275 (303)
T ss_pred HHHHHHHHHHhcCccCcHHHHHHHHHHHhch-----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 3456677777788899999888888876532 22456788999999999977777766544332211
Q ss_pred -hhhhHHHHHHHHHHHHHHHHHH
Q 020530 192 -IGTGLPLAASGLAIVMGLNLLE 213 (325)
Q Consensus 192 -~~~~l~ii~GvllIl~GL~lLg 213 (325)
+...+.++.|.+++++|+.++.
T Consensus 276 ~~~~~~~l~~gli~l~~g~~~l~ 298 (303)
T COG2215 276 RISYIVSLLGGLIGLYFGLHLLL 298 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223566778888889988763
No 25
>TIGR00802 nico high-affinity nickel-transporter, HoxN/HupN/NixA family. This family is found in both Gram-negative and Gram-positive bacteria. The functionally characterized members of the family catalyze uptake of either Ni2+ or Co2+ in a proton motive force-dependent process. Topological analyses with the HoxN Ni2+ transporter of Ralstonia eutropha (Alcaligenes eutrophus) suggest that it possesses 8 TMSs with its N- and C-termini in the cytoplasm.
Probab=84.49 E-value=8.8 Score=37.28 Aligned_cols=163 Identities=18% Similarity=0.201 Sum_probs=81.5
Q ss_pred HHHHHHHhhcCCCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------hhhh
Q 020530 123 VIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQ-------IGTG 195 (325)
Q Consensus 123 ~aFlaGLltslsPCvLpmlPi~la~i~~~~~~~sr~~~l~~~l~F~lG~i~ty~lLG~la~~lG~~l~~-------~~~~ 195 (325)
++|..|+--.+-|=-+..+--..--.. +++++....++.|.+|=.++-.+..++++.....+.+ ++..
T Consensus 3 la~~lGlrHA~DaDHiaAId~~trkl~-----~~~~~~~~~G~~fslGHs~vV~l~~l~ia~~~~~~~~~~~~~~~igg~ 77 (280)
T TIGR00802 3 LAYVLGLRHAFDADHIAAIDNTTRKLM-----QQGRRPLGVGFFFSLGHSTVVVLATVLIAVASALLTERLDGLHEIGGL 77 (280)
T ss_pred HHHHhhhhccCCcchhhhhHHHHHHHh-----hcCCCceeeeeeecCccHHHHHHHHHHHHHHHHHHHhhchhHHhccce
Confidence 466667766666555443332222111 1223445678889999888777776666544333322 2222
Q ss_pred H-HHHHHHHHHHHHHHHH----HHhhh-hccccc----cC----Cch-----hh-h--hcCCCChhhhhHhhHhhhhccC
Q 020530 196 L-PLAASGLAIVMGLNLL----EIIEL-QLPSFF----DN----FDP-----RA-A--AANFPSSVQAYLAGLTFALAAS 253 (325)
Q Consensus 196 l-~ii~GvllIl~GL~lL----g~~~l-~lp~~~----~~----l~~-----~~-~--~~~~~~~~gafllGll~GL~~~ 253 (325)
+ ..+.+.+++++|+.-+ +.++. +-..+. +. +++ |. + .+...+++.-|.+|++||+.+=
T Consensus 78 iGt~VS~~FL~~ig~~Nl~iL~~~~~~~r~~r~g~~~~~~l~~~l~~rG~~~Rll~~lf~~v~~pw~mypvG~LFGLGFD 157 (280)
T TIGR00802 78 IGTLVSALFLLIIALLNLVILRNLLRLFRKVRRGIYDEADLEALLGNRGLLTRLLGPLFRLVTKSWHMYPVGFLFGLGFD 157 (280)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHhhhccCcHHHHHHHHHHHhcCchHHHHHHHHHHcccc
Confidence 2 3556666776664332 21211 100000 00 000 00 0 0124567889999999999743
Q ss_pred CCChHHHHHHHHHHhccCChhHH-HHHHHHHHhhHHHH
Q 020530 254 PCSTPVLATLLGYVATSKDPLIG-GTLLLSYTTGYVAP 290 (325)
Q Consensus 254 PC~~PvL~aiL~~Aaasgs~l~G-~llml~FgLG~~lP 290 (325)
--+---+.++-+.+++++-+.+. ..+.+.|..||++-
T Consensus 158 TATEIaLL~isa~~a~~g~~~~~il~lP~LFtaGM~L~ 195 (280)
T TIGR00802 158 TATEVALLGLSASAAARGLSIAAVLSLPVLFAAGMALF 195 (280)
T ss_pred hHHHHHHHHHHHHHhccCCChHHHHHHHHHHHhhhHHh
Confidence 32211222222222333444444 56689999999764
No 26
>PF09930 DUF2162: Predicted transporter (DUF2162); InterPro: IPR017199 This group represents a predicted membrane transporter, MTH672 type.
Probab=82.32 E-value=45 Score=31.41 Aligned_cols=56 Identities=21% Similarity=0.110 Sum_probs=32.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hH---HHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 020530 155 KSRAQIIGDSIAFSLGLATTLALLGVGASFA-GK---AYGQIGTGLPLAASGLAIVMGLNLLEI 214 (325)
Q Consensus 155 ~sr~~~l~~~l~F~lG~i~ty~lLG~la~~l-G~---~l~~~~~~l~ii~GvllIl~GL~lLg~ 214 (325)
-+||+.......|.++.... +.+++.. -+ .+.++..++..+.+.+++..|+.....
T Consensus 29 ls~k~~~~i~~~Y~~l~~~l----~~i~~~~~~~~~~~i~~yg~~~h~imal~li~~Gi~ti~~ 88 (224)
T PF09930_consen 29 LSRKEIALIALGYGLLFLLL----GYIASPINMEIYEFILRYGMVIHLIMALLLIYAGIYTIKK 88 (224)
T ss_pred ccHHHHHHHHHHHHHHHHHH----HHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 35666555555555555443 4444333 11 223344566778888888888887744
No 27
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=80.38 E-value=43 Score=30.00 Aligned_cols=81 Identities=22% Similarity=0.133 Sum_probs=47.2
Q ss_pred HHHHHHHhhcCCCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHH---HhhhhHHH
Q 020530 123 VIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASF-AGKAYG---QIGTGLPL 198 (325)
Q Consensus 123 ~aFlaGLltslsPCvLpmlPi~la~i~~~~~~~sr~~~l~~~l~F~lG~i~ty~lLG~la~~-lG~~l~---~~~~~l~i 198 (325)
..++..++..++| .|-.-..+..-. ++..+.++.+.+|..+.+.+...++.. ++..+. .....+.+
T Consensus 8 ~~~~~~~~~~~sP--GP~~~~v~~~~~--------~~G~r~~~~~~~G~~~g~~v~~~~~~~Gl~~l~~~~p~~~~~lk~ 77 (205)
T PRK10520 8 AYLLTSIILSLSP--GSGAINTMSTSI--------SHGYRGAVASIAGLQTGLAIHIVLVGVGLGALFSQSLLAFEVLKW 77 (205)
T ss_pred HHHHHHHHHhcCC--chhHHHHHHHHH--------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3444556666667 333322332211 123445778888888888777655543 222333 33456778
Q ss_pred HHHHHHHHHHHHHHH
Q 020530 199 AASGLAIVMGLNLLE 213 (325)
Q Consensus 199 i~GvllIl~GL~lLg 213 (325)
+.+..++.+|..++.
T Consensus 78 ~Ga~YL~~lg~~~~~ 92 (205)
T PRK10520 78 AGAAYLIWLGIQQWR 92 (205)
T ss_pred HHHHHHHHHHHHHHh
Confidence 888888889998873
No 28
>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]
Probab=76.72 E-value=63 Score=29.88 Aligned_cols=80 Identities=19% Similarity=0.277 Sum_probs=56.9
Q ss_pred HHhhcCCCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHHHHHHH
Q 020530 128 GLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVM 207 (325)
Q Consensus 128 GLltslsPCvLpmlPi~la~i~~~~~~~sr~~~l~~~l~F~lG~i~ty~lLG~la~~lG~~l~~~~~~l~ii~GvllIl~ 207 (325)
.+....+|= ..+|++++...+.. .++|++..++...|.+.....|...|-..- +.++--.+.+++..|+++..+
T Consensus 13 ~Lf~i~dP~--G~ipvf~slt~~~~-~~~r~~v~~ra~i~a~~ill~f~~~G~~il---~~fgIsi~a~rIAGGilLf~i 86 (203)
T COG2095 13 LLFAIIDPI--GNLPVFISLTKGLS-PEERNRVALRASIIALLILLVFLLLGEGIL---RFFGISIDAFRIAGGILLFLI 86 (203)
T ss_pred HHHHHhCCC--chhHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCchhHHHHhhhHHHHHH
Confidence 444555663 56788888765543 456777888999999999988888875432 223323356899999999999
Q ss_pred HHHHHH
Q 020530 208 GLNLLE 213 (325)
Q Consensus 208 GL~lLg 213 (325)
|+.++.
T Consensus 87 a~~ml~ 92 (203)
T COG2095 87 ALRMLF 92 (203)
T ss_pred HHHHhc
Confidence 999983
No 29
>PRK13747 putative mercury resistance protein; Provisional
Probab=74.59 E-value=7.8 Score=30.54 Aligned_cols=33 Identities=30% Similarity=0.584 Sum_probs=23.9
Q ss_pred CChhhhhHhhHhhhhccCCCChHHHHHHHHHHhc
Q 020530 236 PSSVQAYLAGLTFALAASPCSTPVLATLLGYVAT 269 (325)
Q Consensus 236 ~~~~gafllGll~GL~~~PC~~PvL~aiL~~Aaa 269 (325)
.+....|+.|.+ +++.|||--|++..+|+..+.
T Consensus 12 ~~~~~~YlWg~l-AvLTCPCHLpiLa~lLAGTa~ 44 (78)
T PRK13747 12 HKPITGYLWGAL-AVLTCPCHLPILAAVLAGTTA 44 (78)
T ss_pred cCcchhhhhHHH-HHhcCcchHHHHHHHHccchH
Confidence 345667888875 456799999999887765443
No 30
>COG2836 Uncharacterized conserved protein [Function unknown]
Probab=68.42 E-value=53 Score=31.17 Aligned_cols=84 Identities=26% Similarity=0.252 Sum_probs=53.8
Q ss_pred HHHHHHHHHhhcCCCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHH
Q 020530 121 LAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAA 200 (325)
Q Consensus 121 l~~aFlaGLltslsPCvLpmlPi~la~i~~~~~~~sr~~~l~~~l~F~lG~i~ty~lLG~la~~lG~~l~~~~~~l~ii~ 200 (325)
...++..|++-++.||- ++.+...-.+.. .|-.+....-++|.+|..-+....|.....+-+.... -+....
T Consensus 132 ~~~~~~lG~~wG~lPCG-lVYs~l~~A~~t----gS~~~Gal~mlaFGlGTlP~ll~~G~~s~~~s~~~r~---~~~rl~ 203 (232)
T COG2836 132 LPGALFLGMLWGLLPCG-LVYSALAYALST----GSAFEGALVMLAFGLGTLPNLLAMGIFSSKLSKSSRK---RLNRLS 203 (232)
T ss_pred chHHHHHHHHhcccchH-HHHHHHHHHHHc----CCHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 67788889999998997 555544433332 2444566778899999999999999887766554332 233334
Q ss_pred HHHHHHHHHHHH
Q 020530 201 SGLAIVMGLNLL 212 (325)
Q Consensus 201 GvllIl~GL~lL 212 (325)
+.++++.|+..+
T Consensus 204 ~gl~~v~g~~~l 215 (232)
T COG2836 204 GGLMVVVGLIGL 215 (232)
T ss_pred hHHHHHHHHHHH
Confidence 444444444443
No 31
>TIGR00948 2a75 L-lysine exporter.
Probab=66.48 E-value=89 Score=27.26 Aligned_cols=87 Identities=10% Similarity=0.006 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-HHHH---HhhhhHHHHHHHHHHHHHHHHHHHhhhhccccccCCchhhhhcCCCChh
Q 020530 164 SIAFSLGLATTLALLGVGASFAG-KAYG---QIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSV 239 (325)
Q Consensus 164 ~l~F~lG~i~ty~lLG~la~~lG-~~l~---~~~~~l~ii~GvllIl~GL~lLg~~~l~lp~~~~~l~~~~~~~~~~~~~ 239 (325)
++...+|..+...+...++.+.- ..+. ...+.+.++.+..++.+|..++..-+ +.+. + .+. . ..+..+..
T Consensus 22 g~~~~~G~~~g~~i~~~~~~~Gl~~ll~~~p~~~~~l~~~Ga~YLlylg~~~~r~~~-~~~~--~-~~~-~-~~~~~~~~ 95 (177)
T TIGR00948 22 VLLIVALCCICDLVLIAAGVFGVAALLAASPILLAVLTWGGALFLLWYGFLAAKTAW-RGPG--A-LVP-D-EPKKMGLK 95 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccc--c-ccc-c-cccccCHH
Confidence 67778888877777765544322 2333 33456788888888999998874311 1000 0 000 0 01112334
Q ss_pred hhhHhhHhhhhccCCCCh
Q 020530 240 QAYLAGLTFALAASPCST 257 (325)
Q Consensus 240 gafllGll~GL~~~PC~~ 257 (325)
+.|.-|+...+. -|=+.
T Consensus 96 ~~f~~G~~~~l~-NPKa~ 112 (177)
T TIGR00948 96 KVLAMTLAVTLL-NPHVY 112 (177)
T ss_pred HHHHHHHHHHHh-CchHH
Confidence 568888888763 67653
No 32
>PF03824 NicO: High-affinity nickel-transport protein; InterPro: IPR011541 High affinity nickel transporters are involved in the incorporation of nickel into H2-uptake hydrogenase [, ] and urease [] enzymes and are essential for the expression of catalytically active hydrogenase and urease. Ion uptake is dependent on proton motive force. HoxN in Ralstonia eutropha (Alcaligenes eutrophus) is thought to be an integral membrane protein with seven transmembrane helices []. The family also includes a cobalt transporter. ; GO: 0046872 metal ion binding, 0030001 metal ion transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=62.74 E-value=98 Score=29.30 Aligned_cols=68 Identities=24% Similarity=0.228 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhhcCCCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHH
Q 020530 118 FTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSL-GLATTLALLGVGASFAGKAYG 190 (325)
Q Consensus 118 ~~~l~~aFlaGLltslsPCvLpmlPi~la~i~~~~~~~sr~~~l~~~l~F~l-G~i~ty~lLG~la~~lG~~l~ 190 (325)
.......|..|+..++.||.....-+......+ .........+.+.+ |..++...+..++...+....
T Consensus 176 ~~~~~~~~~~~f~~Gm~p~~~a~~vl~~~~~~~-----~~~~g~~~~~~~~l~g~~i~~~~~~~~~~~~~~~~~ 244 (282)
T PF03824_consen 176 PISWILLLGLGFAAGMVPCPGALGVLLFALYLG-----AFWAGRAAVLAMSLGGMAITVALFAGLAVLARLLAK 244 (282)
T ss_pred CchHHHHHHHHHHhhccccHHHHHHHHHHHHcc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888899995544333333221 11223456677777 777777777766655555433
No 33
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=61.42 E-value=1.3e+02 Score=27.38 Aligned_cols=131 Identities=23% Similarity=0.179 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHhhcCCCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHhhh
Q 020530 119 TSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGAS----FAGKAYGQIGT 194 (325)
Q Consensus 119 ~~l~~aFlaGLltslsPCvLpmlPi~la~i~~~~~~~sr~~~l~~~l~F~lG~i~ty~lLG~la~----~lG~~l~~~~~ 194 (325)
..++..+.+.++...+|= |..-..++.-.+ +.|++ ++...+|..+...+.-.++. .+-........
T Consensus 4 ~~~l~~~~~~~~~~~~PG--P~~~~v~~~~~~----~G~~~----g~~~~~G~~~G~~v~~~l~~~Gl~all~~~~~~f~ 73 (208)
T COG1280 4 TNLLAFLLAALVLAATPG--PDNLLVLARSLS----RGRRA----GLATALGIALGDLVHMLLAALGLAALLATSPALFT 73 (208)
T ss_pred HHHHHHHHHHHHHhcCCC--ccHHHHHHHHHH----hcHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 445556666677777653 444334333221 22444 45555555544443332221 12222233456
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhccccccCCchhhhhcCCCChhhhhHhhHhhhhccCCCChHHHHHHHHHH
Q 020530 195 GLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYV 267 (325)
Q Consensus 195 ~l~ii~GvllIl~GL~lLg~~~l~lp~~~~~l~~~~~~~~~~~~~gafllGll~GL~~~PC~~PvL~aiL~~A 267 (325)
.+.++.+.-++.+|..++..-+ +. .+.+....++....+.|.-|++..+. -|=.--+..+++..-
T Consensus 74 ~lk~~GaaYL~ylg~~~~ra~~---~~----~~~~~~~~~~~~~~~~f~~G~~~~l~-NPK~~lf~la~~pqf 138 (208)
T COG1280 74 VLKLAGAAYLLYLGWKALRAGG---AA----LAEEAAGAPSSSRRKAFRRGLLVNLL-NPKAILFFLAFLPQF 138 (208)
T ss_pred HHHHHHHHHHHHHHHHHHhccc---cc----ccccccccccchhHHHHHHHHHHHhh-CcHHHHHHHHHHhhh
Confidence 6788888888899998773211 10 00000000011113578888888874 666544444444433
No 34
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=60.28 E-value=88 Score=32.68 Aligned_cols=101 Identities=24% Similarity=0.292 Sum_probs=55.2
Q ss_pred hhhhccCCCCCchhH-HHHHHhhHHHHH------HHHhhcccc-HHHHHHHHHHHHhhcC-CCCccchHHHHHHHHhhcC
Q 020530 82 VYTMADGSLGDMFGG-FLYSAGQQANEA------VLGQLSALS-FTSLAVIFGAGLVTSL-SPCTLSVLPLTLGYIGAFG 152 (325)
Q Consensus 82 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~------v~~~l~~~s-~~~l~~aFlaGLltsl-sPCvLpmlPi~la~i~~~~ 152 (325)
++.+-.|-+.|..|. .+.-..|-..-. +....+..+ +..+...|+.|..+.+ .|.--.++|-.+. +
T Consensus 60 Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~----~- 134 (524)
T PF05977_consen 60 LLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVP----K- 134 (524)
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----H-
Confidence 455555666666554 344444433321 122223333 3556667888887654 3555455553321 1
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 020530 153 SGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKA 188 (325)
Q Consensus 153 ~~~sr~~~l~~~l~F~lG~i~ty~lLG~la~~lG~~ 188 (325)
++-.+..-.....+++.++..-++-|++++.+|..
T Consensus 135 -~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~ 169 (524)
T PF05977_consen 135 -EDLPAANALNSISFNIARIIGPALGGILVAFFGAA 169 (524)
T ss_pred -hhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 11111223567888889988888888888877764
No 35
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=57.43 E-value=71 Score=28.27 Aligned_cols=53 Identities=23% Similarity=0.107 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 020530 160 IIGDSIAFSLGLATTLALLGVGASF---AGKAYGQIGTGLPLAASGLAIVMGLNLL 212 (325)
Q Consensus 160 ~l~~~l~F~lG~i~ty~lLG~la~~---lG~~l~~~~~~l~ii~GvllIl~GL~lL 212 (325)
.+.....+.+|+++.-...++++-+ +|..+.......-+++|++++.+|+..+
T Consensus 5 ~i~~i~~iilgilli~~gI~~Lv~~~~~l~~~~s~~lg~~~lAlg~vL~~~g~~~~ 60 (191)
T PF04156_consen 5 RIISIILIILGILLIASGIAALVLFISGLGALISFILGIALLALGVVLLSLGLLCL 60 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555667777777332222221111 2222222222233445666666676655
No 36
>PRK10958 leucine export protein LeuE; Provisional
Probab=54.38 E-value=1.7e+02 Score=26.56 Aligned_cols=51 Identities=12% Similarity=0.074 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhHHH---HHhhhhHHHHHHHHHHHHHHHHHH
Q 020530 163 DSIAFSLGLATTLALLGVGASF-AGKAY---GQIGTGLPLAASGLAIVMGLNLLE 213 (325)
Q Consensus 163 ~~l~F~lG~i~ty~lLG~la~~-lG~~l---~~~~~~l~ii~GvllIl~GL~lLg 213 (325)
+++.+.+|..+.+.+...+... ++..+ ....+.++++.+..++.+|..++.
T Consensus 42 ~~~~~~~G~~~g~~~~~~~~~~G~~~l~~~~p~~~~~l~~~G~~yL~~la~~~~~ 96 (212)
T PRK10958 42 AGYRAACGVFIGDAVLMFLAAAGVASLLKATPLLFNVVKYLGAAYLLYLGVKMLR 96 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666777666666544432 22222 334566788888888899998873
No 37
>PRK10229 threonine efflux system; Provisional
Probab=52.21 E-value=1.7e+02 Score=26.03 Aligned_cols=127 Identities=13% Similarity=0.093 Sum_probs=63.9
Q ss_pred HHHHHHHhhcCCCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHH---HhhhhHHH
Q 020530 123 VIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASF-AGKAYG---QIGTGLPL 198 (325)
Q Consensus 123 ~aFlaGLltslsPCvLpmlPi~la~i~~~~~~~sr~~~l~~~l~F~lG~i~ty~lLG~la~~-lG~~l~---~~~~~l~i 198 (325)
..++.+++..++| .|..-..+..-. +. ..+.++...+|....+.+...++.+ ++..+. ...+.+++
T Consensus 7 ~~~~~~~~~~~sP--GP~~~~vi~~~~----~~----G~~~~~~~~~G~~~g~~i~~~l~~~Gl~~ll~~~p~~~~~l~~ 76 (206)
T PRK10229 7 TVAMVHIVALMSP--GPDFFFVSQTAV----SR----SRKEAMMGVLGITCGVMVWAGVALLGLHLILEKMAWLHTIIMV 76 (206)
T ss_pred HHHHHHHHHhcCC--CchhHHHHHHHH----hc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3455567777776 333322222211 11 2345677788888777776554332 223333 23456777
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccccCCchhhhhcCCCChhhhhHhhHhhhhccCCCChHHHHHHHH
Q 020530 199 AASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLG 265 (325)
Q Consensus 199 i~GvllIl~GL~lLg~~~l~lp~~~~~l~~~~~~~~~~~~~gafllGll~GL~~~PC~~PvL~aiL~ 265 (325)
+.+..++.+|..++..-+ .+. +..++.. ..+.++....|.-|++..+. -|=+-.++.+++.
T Consensus 77 ~Ga~yLlylg~~~~~~~~--~~~--~~~~~~~-~~~~~~~~~~f~~G~l~~l~-NPka~lf~~ai~~ 137 (206)
T PRK10229 77 GGGLYLCWMGYQMLRGAL--KKE--DVAAEEP-QVELAKSGRSFLKGLLTNLS-NPKAIIYFGSVFS 137 (206)
T ss_pred HHHHHHHHHHHHHHHhcc--ccc--ccccccc-cccCccHHHHHHHHHHHhcc-CcHHHHHHHHHHH
Confidence 788888889988874211 010 0000000 00112223568888888764 6766444444333
No 38
>PF05052 MerE: MerE protein; InterPro: IPR007746 The prokaryotic MerE (or URF-1) protein is part of the mercury resistance operon often located on plasmids or transposons [, ]. It has been suggested that MerE is a broad mercury transporter mediating transport across the bacterial membrane [].
Probab=50.89 E-value=37 Score=26.74 Aligned_cols=30 Identities=40% Similarity=0.691 Sum_probs=22.0
Q ss_pred hhhhhHhhHhhhhccCCCChHHHHHHHHHHh
Q 020530 238 SVQAYLAGLTFALAASPCSTPVLATLLGYVA 268 (325)
Q Consensus 238 ~~gafllGll~GL~~~PC~~PvL~aiL~~Aa 268 (325)
..+.|+.|.+.-+ .|||--|++..+|+..+
T Consensus 14 ~i~gy~Wg~lA~l-TCPCHLpil~~vLaGTa 43 (75)
T PF05052_consen 14 PITGYLWGLLALL-TCPCHLPILAPVLAGTA 43 (75)
T ss_pred cchhhhhHHHHHh-hCcchHHHHHHHHccch
Confidence 4556788776655 69999999988766443
No 39
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=50.49 E-value=1.7e+02 Score=25.44 Aligned_cols=53 Identities=17% Similarity=0.119 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhHHHH---HhhhhHHHHHHHHHHHHHHHHHH
Q 020530 161 IGDSIAFSLGLATTLALLGVGASF-AGKAYG---QIGTGLPLAASGLAIVMGLNLLE 213 (325)
Q Consensus 161 l~~~l~F~lG~i~ty~lLG~la~~-lG~~l~---~~~~~l~ii~GvllIl~GL~lLg 213 (325)
.+.++.+.+|..+.+.++..++.. ++..+. .....++++.+..++.+|..++.
T Consensus 18 ~~~~~~~~~G~~~g~~~~~~~~~~Gl~~l~~~~~~~~~~l~~~Ga~yLl~lg~~~~~ 74 (185)
T TIGR00949 18 RRAGVLTILGIALGDAIWIVLSLLGLAVLISKSVILFTVIKWLGGAYLIYLGIKMLR 74 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888777665543 333333 23466788888888999998873
No 40
>COG1279 Lysine efflux permease [General function prediction only]
Probab=49.22 E-value=1e+02 Score=28.68 Aligned_cols=77 Identities=21% Similarity=0.235 Sum_probs=47.5
Q ss_pred HhhcCCCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHH--hhhhHHHHHHH
Q 020530 129 LVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLAT----TLALLGVGASFAGKAYGQ--IGTGLPLAASG 202 (325)
Q Consensus 129 LltslsPCvLpmlPi~la~i~~~~~~~sr~~~l~~~l~F~lG~i~----ty~lLG~la~~lG~~l~~--~~~~l~ii~Gv 202 (325)
.+|.+||.++-=--+.++.+..+-+...| ..|.+|-++ =|..||..+..+.+.+.. ..+++..+.++
T Consensus 117 avT~LNPhvyLDtvvliGs~~~~~~~~~k-------~~F~~Ga~~aS~~WF~~L~~~a~~l~~~~~~pk~~riin~vva~ 189 (202)
T COG1279 117 AVTLLNPHVYLDTVVLIGSLAAQLSDEAK-------WFFALGAISASFLWFFLLALGARWLSPLLANPKAWRIINLVVAV 189 (202)
T ss_pred HHHHhCchhhhhhHhhhhhhhhhcCcchh-------hHHHHHHHHHHHHHHHHHHHHHHHHchhccCcHHHHHHHHHHHH
Confidence 46889999987555566665543222222 245555553 456666555555554432 34567788899
Q ss_pred HHHHHHHHHH
Q 020530 203 LAIVMGLNLL 212 (325)
Q Consensus 203 llIl~GL~lL 212 (325)
+|..+++.+.
T Consensus 190 vM~~ia~~L~ 199 (202)
T COG1279 190 VMWALAVKLA 199 (202)
T ss_pred HHHHHHHHHh
Confidence 9888888764
No 41
>PRK05151 electron transport complex protein RsxA; Provisional
Probab=48.80 E-value=2.2e+02 Score=26.24 Aligned_cols=59 Identities=22% Similarity=0.285 Sum_probs=40.2
Q ss_pred hHhhHhhhhccCCCChHHHHHHHHHHhccCChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 020530 242 YLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQVVSC 306 (325)
Q Consensus 242 fllGll~GL~~~PC~~PvL~aiL~~Aaasgs~l~G~llml~FgLG~~lPLll~~~~~g~L~~l~~ 306 (325)
-.+|....+..+-|. +++..+..+....++......-+.-|+|+++-+++++ .++++++
T Consensus 101 ~~LGiflpLI~tNCa--VLG~al~~~~~~~~~~~s~~~glg~GlGf~lal~lla----~iRErl~ 159 (193)
T PRK05151 101 RLLGIFLPLITTNCA--VLGVALLNINLGHNFLQSALYGFGAAVGFSLVLVLFA----AIRERLA 159 (193)
T ss_pred HHHhhhhhHHHHHHH--HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHc
Confidence 356788888888997 8888777777666777666666666666665555554 4454443
No 42
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=46.85 E-value=2.2e+02 Score=25.60 Aligned_cols=50 Identities=24% Similarity=0.099 Sum_probs=32.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 020530 155 KSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLL 212 (325)
Q Consensus 155 ~sr~~~l~~~l~F~lG~i~ty~lLG~la~~lG~~l~~~~~~l~ii~GvllIl~GL~lL 212 (325)
+.|++....+...++..-..|..+|. .+-+ .++++++.|++++..+..++
T Consensus 30 ~~r~~~~~~G~~~A~vlr~if~~~G~-------~ll~-~~~~~iaGGllLl~ia~~ml 79 (176)
T TIGR03717 30 HQRKKAIFWGTAGAIVLRILLTAVAV-------YLLA-IPFLKLIGGLLLLWIGWKLL 79 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH-hHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555554443 2222 36788999999999999987
No 43
>PRK09304 arginine exporter protein; Provisional
Probab=46.01 E-value=2.3e+02 Score=25.55 Aligned_cols=117 Identities=10% Similarity=0.008 Sum_probs=59.4
Q ss_pred HHHHHHHHHhhcCCCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHH---HhhhhH
Q 020530 121 LAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASF-AGKAYG---QIGTGL 196 (325)
Q Consensus 121 l~~aFlaGLltslsPCvLpmlPi~la~i~~~~~~~sr~~~l~~~l~F~lG~i~ty~lLG~la~~-lG~~l~---~~~~~l 196 (325)
+...+..|+..+++| .|-.+..+... -+++ .++...+|..+...+...++.. ++..+. .....+
T Consensus 5 ~~~g~~~g~~~~~tP-----GP~~~~v~~~~---~~~~----~~~~~~~Gi~~g~~~~~~la~~Gl~~Ll~~~p~~~~~l 72 (207)
T PRK09304 5 YFQGFALGAAMILPL-----GPQNAFVMNQG---IRRQ----YHLMIALLCALSDLVLICAGIFGGSALLMQSPWLLALV 72 (207)
T ss_pred HHHHHHHHHHHHhcc-----ChHHHHHHHHH---Hccc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577788777754 33443333211 1122 2556677777666666544332 223333 234556
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCchhhhhcCCCChhhhhHhhHhhhhccCCCC
Q 020530 197 PLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCS 256 (325)
Q Consensus 197 ~ii~GvllIl~GL~lLg~~~l~lp~~~~~l~~~~~~~~~~~~~gafllGll~GL~~~PC~ 256 (325)
.++.+.-++.+|..++..-+ + ++. ..+.+ ..+.++..+.|.-|+...+. -|=+
T Consensus 73 ~~~Ga~YLlyLg~~~~rs~~-~-~~~--~~~~~--~~~~~~~~~~f~~G~~~~l~-NPKa 125 (207)
T PRK09304 73 TWGGVAFLLWYGFGAFKTAM-S-SNI--ELASA--EVMKQGRWKIIATMLAVTWL-NPHV 125 (207)
T ss_pred HHHHHHHHHHHHHHHHHHhc-c-ccc--ccccc--cccCccHHHHHHHHHHHHHh-CcHH
Confidence 77788888889998874311 0 100 00000 01112334568888887763 5654
No 44
>COG5486 Predicted metal-binding integral membrane protein [Function unknown]
Probab=36.80 E-value=3.6e+02 Score=26.13 Aligned_cols=120 Identities=18% Similarity=0.145 Sum_probs=72.4
Q ss_pred CCCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------hhhhHHHHHHHHHH
Q 020530 133 LSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQ-------IGTGLPLAASGLAI 205 (325)
Q Consensus 133 lsPCvLpmlPi~la~i~~~~~~~sr~~~l~~~l~F~lG~i~ty~lLG~la~~lG~~l~~-------~~~~l~ii~GvllI 205 (325)
..|-..||+-.+... ... .+.|.+.+.....|..|-..+....|+++..+-...+. ....-+++.|+.++
T Consensus 97 MlPsaaPmi~~ya~i-~r~--~~~~g~pva~t~~f~aGyl~vW~af~llat~l~~l~~a~al~~p~~s~~~~l~gg~~L~ 173 (283)
T COG5486 97 MLPSAAPMILLYAEI-GRT--AAIRGEPVAHTLVFVAGYLLVWAAFGLLATGLQWLLHAFALLGPILSPLSGLAGGLTLL 173 (283)
T ss_pred hCccccHHHHHHHHH-HHH--HHhcCCceeehHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccchhcchhhHHHHHHHH
Confidence 348887777655432 221 11233446678999999999999999987654333321 12345778888999
Q ss_pred HHHHHHHHHhhh-hccccccCCch--hhhhcCCCChhhhhHhhHhhhhccCCCC
Q 020530 206 VMGLNLLEIIEL-QLPSFFDNFDP--RAAAANFPSSVQAYLAGLTFALAASPCS 256 (325)
Q Consensus 206 l~GL~lLg~~~l-~lp~~~~~l~~--~~~~~~~~~~~gafllGll~GL~~~PC~ 256 (325)
+-|++.+--.|- .+.+ -++.-. .++-..+.+..++|-+|+--|+--.-|+
T Consensus 174 vAGlYQft~LK~~CL~q-CrtPl~fl~shw~fr~~p~ga~~LGlrhGlyClGCC 226 (283)
T COG5486 174 VAGLYQFTTLKHACLSQ-CRTPLSFLFSHWRFRAKPVGAFRLGLRHGLYCLGCC 226 (283)
T ss_pred HhhhhhhccHHHHHHHH-ccchHHHHHHhcCcccCcchhhhhccccccchHHHH
Confidence 999998743321 1110 011000 0011223567889999999998767776
No 45
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=35.50 E-value=3.6e+02 Score=28.72 Aligned_cols=109 Identities=18% Similarity=0.038 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhccccccCCchhhhhcCCCChhhhhHhhHhhhhccCCCChHHHHHHHHHHhc-cCCh
Q 020530 195 GLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAT-SKDP 273 (325)
Q Consensus 195 ~l~ii~GvllIl~GL~lLg~~~l~lp~~~~~l~~~~~~~~~~~~~gafllGll~GL~~~PC~~PvL~aiL~~Aaa-sgs~ 273 (325)
.-+.+.|+-++.+++.+++..--|+-... .+..-.... ...+..++++|.+++.+.-+-.+ ...-++..+.. --|.
T Consensus 133 lG~~~~GiGl~f~sl~l~~~a~~pl~~s~-~~~~~i~~l-~~~~~~~l~~g~~lt~l~~SS~A-~i~i~~~l~~~glis~ 209 (533)
T COG1283 133 LGRVLFGIGLIFLSLELLGQATEPLRQSP-AFSDFIAKL-SDDPIVALLIGALLTALIQSSLA-AIGILLSLTSQGLISL 209 (533)
T ss_pred cchhHHHHHHHHHHHHHHHHhhhhhhhch-hHHHHHHHh-ccccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcccch
Confidence 34667788888889998875433221110 010001111 23455667788888776443332 12112222221 2345
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 020530 274 LIGGTLLLSYTTGYVAPLLLAASFAGALQVVSC 306 (325)
Q Consensus 274 l~G~llml~FgLG~~lPLll~~~~~g~L~~l~~ 306 (325)
-.+..+.+.=.+|+++|-++++...+.-.|...
T Consensus 210 ~~~~alvLGaNlGt~i~a~laa~~~~~~arr~a 242 (533)
T COG1283 210 EAALALVLGANLGTTITAVLAALGASAAARRVA 242 (533)
T ss_pred hHHHHHHHHHhhhchhHHHHHhcccchhHHHHH
Confidence 567788888889999998887766665554444
No 46
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=30.91 E-value=1.7e+02 Score=26.68 Aligned_cols=54 Identities=20% Similarity=0.274 Sum_probs=42.2
Q ss_pred hhHhhHhhhhccCCCChHHHHHHHHHHhccCChhHHHHHHHHHHhhHHHHHHHHHH
Q 020530 241 AYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAAS 296 (325)
Q Consensus 241 afllGll~GL~~~PC~~PvL~aiL~~Aaasgs~l~G~llml~FgLG~~lPLll~~~ 296 (325)
.=.+|+..-+.-+-|. +++..+.-.-...+..+...+-+.=++|+++.+++++.
T Consensus 100 Yr~LGIfLPLITTNCa--VLgvaLln~~~~~~f~qsv~~gf~a~lGfslvmvlfA~ 153 (193)
T COG4657 100 YRLLGIFLPLITTNCA--VLGVALLNINEGHNFLQSVVYGFGAALGFSLVMVLFAA 153 (193)
T ss_pred HHHHHHhhhhHhhchH--HHHHHHHHhhhhhhHHHHHHHHhhhHhhHHHHHHHHHH
Confidence 3467999999999997 88888887777778888877777777777777766553
No 47
>PF08611 DUF1774: Fungal protein of unknown function (DUF1774); InterPro: IPR013920 This is a fungal protein of unknown function.
Probab=29.99 E-value=2.5e+02 Score=23.22 Aligned_cols=44 Identities=9% Similarity=0.116 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHHHHHHHHHH
Q 020530 167 FSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLN 210 (325)
Q Consensus 167 F~lG~i~ty~lLG~la~~lG~~l~~~~~~l~ii~GvllIl~GL~ 210 (325)
|..|..++|..+++.++-+-.-.-..|+.+..+...++.++.+.
T Consensus 25 ~~~GfslS~L~~slgv~Q~~~kvialQWIFAFvI~avlfv~sl~ 68 (97)
T PF08611_consen 25 YAMGFSLSYLTASLGVGQFFIKVIALQWIFAFVIAAVLFVLSLV 68 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788999999888765333222223444444444444444433
No 48
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=26.91 E-value=4.8e+02 Score=23.63 Aligned_cols=89 Identities=20% Similarity=0.106 Sum_probs=43.1
Q ss_pred HHHHHHHhh-cCCCCccchHHHHHHHHhhcCCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--hhhhHHH
Q 020530 123 VIFGAGLVT-SLSPCTLSVLPLTLGYIGAFGSGKS-RAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQ--IGTGLPL 198 (325)
Q Consensus 123 ~aFlaGLlt-slsPCvLpmlPi~la~i~~~~~~~s-r~~~l~~~l~F~lG~i~ty~lLG~la~~lG~~l~~--~~~~l~i 198 (325)
-.|.-|++. ..||=..-.--.++.-+...+ ... ..+.+...+.+.+=-...+...........+.+.. ..+++..
T Consensus 112 ~~f~~G~~~~l~NPK~~lf~la~~pqfv~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 190 (208)
T COG1280 112 KAFRRGLLVNLLNPKAILFFLAFLPQFVDPG-AGLVLLQALILGLVFILVGFVVLALYALLAARLRRLLRRPRASRIINR 190 (208)
T ss_pred HHHHHHHHHHhhCcHHHHHHHHHHhhhcCCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 468888886 457877443322222222211 111 22222222222222222233333222333444443 4567788
Q ss_pred HHHHHHHHHHHHHH
Q 020530 199 AASGLAIVMGLNLL 212 (325)
Q Consensus 199 i~GvllIl~GL~lL 212 (325)
..|.+++..|+.++
T Consensus 191 ~~G~~li~~g~~l~ 204 (208)
T COG1280 191 LFGVLLIGFGVKLA 204 (208)
T ss_pred HHHHHHHHHHHHHH
Confidence 89999999888765
No 49
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=24.67 E-value=2.2e+02 Score=22.16 Aligned_cols=42 Identities=21% Similarity=0.158 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH--hhhhHHHHHHHHHHHHH
Q 020530 167 FSLGLATTLALLGVGASFAGKAYGQ--IGTGLPLAASGLAIVMG 208 (325)
Q Consensus 167 F~lG~i~ty~lLG~la~~lG~~l~~--~~~~l~ii~GvllIl~G 208 (325)
-.+|......+.-.+...+|+.+.. ..++++++.|++++++|
T Consensus 35 V~~G~~~al~~~~~lav~~G~~l~~~ip~~~i~~~~~~lFl~fG 78 (78)
T PF01169_consen 35 VFAGATLALALATGLAVLLGSWLASRIPERYIKWVAGALFLLFG 78 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
Confidence 4456677777777777778888754 24678888888888765
No 50
>PRK12456 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=22.21 E-value=1.6e+02 Score=27.31 Aligned_cols=59 Identities=12% Similarity=0.066 Sum_probs=37.5
Q ss_pred hHhhHhhhhccCCCChHHHHHHHHHHhccCChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 020530 242 YLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQVVSC 306 (325)
Q Consensus 242 fllGll~GL~~~PC~~PvL~aiL~~Aaasgs~l~G~llml~FgLG~~lPLll~~~~~g~L~~l~~ 306 (325)
-.+|....+..+-|. +++..+..+....++......-+.-|+|+++-+++++ .++++++
T Consensus 108 ~~LGiflpLI~tNCa--VLG~al~~~~~~~~~~~s~~~glg~GlGftlal~l~a----~iRE~l~ 166 (199)
T PRK12456 108 HTLGAFLPLLTIHCA--IFGATIFMVQREYTFTESFVYGTGCGLGWMLAIISMA----GLREKMK 166 (199)
T ss_pred HHHhhhHhHHHHHHH--HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHc
Confidence 345788888888997 7877766555444666666655566666655555544 4555544
Done!