Query 020530
Match_columns 325
No_of_seqs 184 out of 1170
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 04:22:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020530.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020530hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v54_L VIIIA, cytochrome C oxi 12.4 1.8E+02 0.0063 19.8 3.1 19 276-294 22-40 (47)
2 2y69_L Cytochrome C oxidase su 10.0 2.3E+02 0.0079 20.5 3.1 21 275-295 37-57 (63)
3 2l9u_A Receptor tyrosine-prote 8.3 4.7E+02 0.016 17.0 3.7 21 161-181 6-26 (40)
4 1pw4_A Glycerol-3-phosphate tr 5.5 1.4E+03 0.049 19.9 11.7 30 272-301 286-315 (451)
5 3o7q_A L-fucose-proton symport 5.3 1.4E+03 0.05 19.8 15.5 32 272-303 293-324 (438)
6 3lge_E Sorting nexin-9; comple 4.4 1.9E+02 0.0066 18.0 0.2 15 83-97 3-18 (31)
7 1p58_A Major envelope protein 3.2 4.7E+02 0.016 26.2 1.8 18 194-211 453-470 (495)
8 2i68_A Protein EMRE; transmemb 2.6 1.7E+03 0.057 17.7 4.4 17 198-214 87-103 (137)
9 1ots_A Voltage-gated CLC-type 2.5 2.5E+03 0.085 20.0 6.4 68 239-306 358-440 (465)
10 2iih_A Molybdenum cofactor bio 2.4 4.5E+02 0.016 22.3 0.6 45 50-95 111-155 (157)
No 1
>1v54_L VIIIA, cytochrome C oxidase polypeptide VIIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.6.1 PDB: 1oco_L* 1occ_L* 1ocz_L* 1ocr_L* 1v55_L* 2dyr_L* 2dys_L* 2eij_L* 2eik_L* 2eil_L* 2eim_L* 2ein_L* 2occ_L* 2ybb_W* 2zxw_L* 3abk_L* 3abl_L* 3abm_L* 3ag1_L* 3ag2_L* ...
Probab=12.41 E-value=1.8e+02 Score=19.75 Aligned_cols=19 Identities=21% Similarity=0.569 Sum_probs=14.9
Q ss_pred HHHHHHHHHhhHHHHHHHH
Q 020530 276 GGTLLLSYTTGYVAPLLLA 294 (325)
Q Consensus 276 G~llml~FgLG~~lPLll~ 294 (325)
.+.+...++.|.++|++++
T Consensus 22 ~~~~~~f~g~GF~~PF~i~ 40 (47)
T 1v54_L 22 LAMMTLFFGSGFAAPFFIV 40 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHH
Confidence 4556678899999999865
No 2
>2y69_L Cytochrome C oxidase subunit 7C; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=10.01 E-value=2.3e+02 Score=20.45 Aligned_cols=21 Identities=19% Similarity=0.550 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHH
Q 020530 275 IGGTLLLSYTTGYVAPLLLAA 295 (325)
Q Consensus 275 ~G~llml~FgLG~~lPLll~~ 295 (325)
..+.+...|++|.++|++++-
T Consensus 37 ~~~~~~~f~g~GF~~PF~i~~ 57 (63)
T 2y69_L 37 LLAMMTLFFGSGFAAPFFIVR 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHH
Confidence 445566788999999998653
No 3
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=8.28 E-value=4.7e+02 Score=16.96 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020530 161 IGDSIAFSLGLATTLALLGVG 181 (325)
Q Consensus 161 l~~~l~F~lG~i~ty~lLG~l 181 (325)
+...+....|.+..|..||.-
T Consensus 6 l~malt~i~gl~vif~~lg~t 26 (40)
T 2l9u_A 6 LTMALTVIAGLVVIFMMLGGT 26 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCce
Confidence 456777888888888888754
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=5.46 E-value=1.4e+03 Score=19.94 Aligned_cols=30 Identities=10% Similarity=0.002 Sum_probs=17.4
Q ss_pred ChhHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 020530 272 DPLIGGTLLLSYTTGYVAPLLLAASFAGAL 301 (325)
Q Consensus 272 s~l~G~llml~FgLG~~lPLll~~~~~g~L 301 (325)
+......++..++++..+--++.+...++.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 315 (451)
T 1pw4_A 286 ALDKSSWAYFLYEYAGIPGTLLCGWMSDKV 315 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555667777777655455555555554
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=5.32 E-value=1.4e+03 Score=19.85 Aligned_cols=32 Identities=3% Similarity=-0.028 Sum_probs=19.9
Q ss_pred ChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 020530 272 DPLIGGTLLLSYTTGYVAPLLLAASFAGALQV 303 (325)
Q Consensus 272 s~l~G~llml~FgLG~~lPLll~~~~~g~L~~ 303 (325)
+.......+..++++..+--++.+...+|+++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~ 324 (438)
T 3o7q_A 293 TAGFAANYLTGTMVCFFIGRFTGTWLISRFAP 324 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 55666667777777765555555555555533
No 6
>3lge_E Sorting nexin-9; complex, glycolysis, actin dynamics, LC4, hydrophobic pocket acetylation, lyase, phosphoprotein, schiff base; 2.20A {Oryctolagus cuniculus}
Probab=4.40 E-value=1.9e+02 Score=18.03 Aligned_cols=15 Identities=20% Similarity=0.222 Sum_probs=10.4
Q ss_pred hhhc-cCCCCCchhHH
Q 020530 83 YTMA-DGSLGDMFGGF 97 (325)
Q Consensus 83 ~~~~-~~~~~~~~~~~ 97 (325)
||-+ -|+++||-+.+
T Consensus 3 yq~~~~G~DDDWDdeW 18 (31)
T 3lge_E 3 YQGPATGDDDDWDEDW 18 (31)
T ss_pred ccCCCCCCcccccccc
Confidence 4553 68999997644
No 7
>1p58_A Major envelope protein E; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=3.17 E-value=4.7e+02 Score=26.21 Aligned_cols=18 Identities=11% Similarity=0.148 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 020530 194 TGLPLAASGLAIVMGLNL 211 (325)
Q Consensus 194 ~~l~ii~GvllIl~GL~l 211 (325)
+...+++|++++.+|++.
T Consensus 453 w~~kilig~ll~WlG~n~ 470 (495)
T 1p58_A 453 WTMKILIGVIITWIGMNS 470 (495)
T ss_pred HHHHHHHHHHHheEEecc
Confidence 334577777777777753
No 8
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=2.55 E-value=1.7e+03 Score=17.68 Aligned_cols=17 Identities=12% Similarity=0.270 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020530 198 LAASGLAIVMGLNLLEI 214 (325)
Q Consensus 198 ii~GvllIl~GL~lLg~ 214 (325)
-++|+.+|+.|+.++..
T Consensus 87 ~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 87 AIIGMMLICAGVLIINL 103 (137)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 36778888888888754
No 9
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Probab=2.55 E-value=2.5e+03 Score=19.95 Aligned_cols=68 Identities=19% Similarity=0.177 Sum_probs=41.5
Q ss_pred hhhhHhhHhhhhcc---------CCCChHHHHHHHHHH----hccCChhHHHHHHHHHH--hhHHHHHHHHHHHHHHHHH
Q 020530 239 VQAYLAGLTFALAA---------SPCSTPVLATLLGYV----ATSKDPLIGGTLLLSYT--TGYVAPLLLAASFAGALQV 303 (325)
Q Consensus 239 ~gafllGll~GL~~---------~PC~~PvL~aiL~~A----aasgs~l~G~llml~Fg--LG~~lPLll~~~~~g~L~~ 303 (325)
.-.+.+|..+|.+. .+|..|-.++++..+ +.++.|+.+.++++=.. ..+.+|+++.......+.+
T Consensus 358 ~Psl~iGA~~G~~~g~~~~~~~p~~~~~~~~~alvGmaa~~a~v~raPlt~ivlv~Eltg~~~~llpl~ia~~iA~~v~~ 437 (465)
T 1ots_A 358 APMLALGTVLGTAFGMVAVELFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQ 437 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGGGTCCHHHHHHHHHTHHHHHTSCCHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 34456666555331 135556666666543 45667888776666544 4566888888877766666
Q ss_pred HHh
Q 020530 304 VSC 306 (325)
Q Consensus 304 l~~ 306 (325)
.++
T Consensus 438 ~~~ 440 (465)
T 1ots_A 438 FTG 440 (465)
T ss_dssp TTT
T ss_pred HhC
Confidence 554
No 10
>2iih_A Molybdenum cofactor biosynthesis protein C; MOAC, molybdenum cofactor (MOCO), MOCO biosynthesis, structu genomics, NPPSFA; 1.75A {Thermus thermophilus} PDB: 2ide_A 3jqj_A 3jqk_A 3jqm_A*
Probab=2.41 E-value=4.5e+02 Score=22.29 Aligned_cols=45 Identities=20% Similarity=0.172 Sum_probs=34.1
Q ss_pred hHHHhhhHHHHHhhhchhhhhhhhhhhhchhhhhhhccCCCCCchh
Q 020530 50 NTFLSTLTVANLAAIGNAKALTMENVLEGAASVYTMADGSLGDMFG 95 (325)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (325)
+-.+++..+|.|---|+.||.|-++..++. ++-.=.+|.-|+|..
T Consensus 111 MEALtavsvA~LTiyDM~Kavdk~m~I~~i-rL~~K~GGKSG~~~~ 155 (157)
T 2iih_A 111 MEAMTACAVAALTVYDMLKAASKGLVISQV-RLLHKAGGKSGEWRR 155 (157)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTCTTCEEEEE-EEEEEECSTTCCEEC
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCcEEEeE-EEEEEcCCcCCceec
Confidence 457788899999999999999988877763 344446677788843
Done!