Query 020530
Match_columns 325
No_of_seqs 184 out of 1170
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 04:22:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020530.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020530hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54l_ f.23.6.1 (L:) Mitochon 18.4 47 0.0034 21.2 3.0 17 278-294 23-39 (46)
2 d1tpna_ g.27.1.1 (A:) Tissue-t 7.6 71 0.0052 20.6 1.2 21 6-28 28-49 (50)
3 d1xu1r_ g.24.1.2 (R:) Tumor ne 4.8 82 0.006 19.1 0.2 13 14-26 2-14 (38)
4 d1c4ka1 c.23.1.4 (A:1-107) Orn 3.6 2.5E+02 0.018 20.4 2.3 35 74-108 71-105 (107)
5 d1pw4a_ f.38.1.1 (A:) Glycerol 3.2 9.7E+02 0.07 18.6 10.6 30 272-301 283-312 (447)
6 d1pv7a_ f.38.1.2 (A:) Lactose 2.4 1.1E+03 0.081 17.4 9.5 13 197-209 382-394 (417)
7 d1xmeb2 f.17.2.1 (B:3-36) Bact 2.3 6E+02 0.044 14.3 2.4 14 165-178 17-30 (34)
8 d1nbja_ g.3.3.2 (A:) Cycloviol 2.1 2.8E+02 0.02 15.5 0.7 6 251-256 6-11 (30)
9 d1oede_ f.36.1.1 (E:) Acetylch 2.1 1.2E+03 0.09 17.4 5.6 17 133-149 9-25 (260)
10 d2d8xa1 g.39.1.3 (A:33-64) Pin 2.0 98 0.0071 18.0 -1.5 16 4-20 15-30 (32)
No 1
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=18.38 E-value=47 Score=21.16 Aligned_cols=17 Identities=24% Similarity=0.712 Sum_probs=13.1
Q ss_pred HHHHHHHhhHHHHHHHH
Q 020530 278 TLLLSYTTGYVAPLLLA 294 (325)
Q Consensus 278 llml~FgLG~~lPLll~ 294 (325)
.+.+.||.|++.|++++
T Consensus 23 ~m~~~fGsgfa~PF~iv 39 (46)
T d1v54l_ 23 MMTLFFGSGFAAPFFIV 39 (46)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccchHHHH
Confidence 44567899999998875
No 2
>d1tpna_ g.27.1.1 (A:) Tissue-type plasminogen activator, t-PA {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.57 E-value=71 Score=20.62 Aligned_cols=21 Identities=10% Similarity=0.295 Sum_probs=13.6
Q ss_pred ccccceeeecccCCC-cccccccC
Q 020530 6 NQSVHFSRISCHQRS-TAYGKQMA 28 (325)
Q Consensus 6 ~~~~~~~~~~~~~~~-~~~~~~~~ 28 (325)
.++|.||| |+.+. .-|.+|+.
T Consensus 28 GnrvEyCr--C~~G~~~CHsVPv~ 49 (50)
T d1tpna_ 28 SNRVEYCW--CNSGRAQCHSVPVK 49 (50)
T ss_dssp SSCCEEEE--CSSSSCEEEECCCC
T ss_pred CCceEEEE--ECCCCccccccccC
Confidence 46788999 44444 55777764
No 3
>d1xu1r_ g.24.1.2 (R:) Tumor necrosis factor receptor superfamily member 13B, TACI {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.77 E-value=82 Score=19.12 Aligned_cols=13 Identities=15% Similarity=0.526 Sum_probs=9.8
Q ss_pred ecccCCCcccccc
Q 020530 14 ISCHQRSTAYGKQ 26 (325)
Q Consensus 14 ~~~~~~~~~~~~~ 26 (325)
++|++.||+|-.+
T Consensus 2 l~C~keqG~YYD~ 14 (38)
T d1xu1r_ 2 LSCRKEQGKFYDH 14 (38)
T ss_dssp CCCCGGGTEEEET
T ss_pred cchHHhhchHHHH
Confidence 5788888888643
No 4
>d1c4ka1 c.23.1.4 (A:1-107) Ornithine decarboxylase N-terminal "wing" domain {Lactobacillus sp., strain 30a [TaxId: 1591]}
Probab=3.62 E-value=2.5e+02 Score=20.42 Aligned_cols=35 Identities=6% Similarity=0.001 Sum_probs=26.8
Q ss_pred hhhhchhhhhhhccCCCCCchhHHHHHHhhHHHHH
Q 020530 74 NVLEGAASVYTMADGSLGDMFGGFLYSAGQQANEA 108 (325)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (325)
+.+...+-|+++.+....+|-++|+..+++..++-
T Consensus 71 ~~~~~i~gV~~l~~~~~~~~y~rqlEaAA~~Ye~~ 105 (107)
T d1c4ka1 71 DELKKIFHIIDLENKFDATVNAREIETAVNNYEDS 105 (107)
T ss_dssp HHHTTCCEEEECC--CCSTTHHHHHHHHHHHHHHH
T ss_pred hhccccceEEecccccchhHHHHHHHHHHHHHHHh
Confidence 35566677888888888899999999999888764
No 5
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=3.24 E-value=9.7e+02 Score=18.58 Aligned_cols=30 Identities=10% Similarity=0.002 Sum_probs=15.6
Q ss_pred ChhHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 020530 272 DPLIGGTLLLSYTTGYVAPLLLAASFAGAL 301 (325)
Q Consensus 272 s~l~G~llml~FgLG~~lPLll~~~~~g~L 301 (325)
+..........+.++..+-.++.+...++.
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 312 (447)
T d1pw4a_ 283 ALDKSSWAYFLYEYAGIPGTLLCGWMSDKV 312 (447)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccchhhhhhhcchhhhhhhhhhhhhhhhhc
Confidence 444555556666665444444445555444
No 6
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=2.37 E-value=1.1e+03 Score=17.42 Aligned_cols=13 Identities=23% Similarity=0.105 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 020530 197 PLAASGLAIVMGL 209 (325)
Q Consensus 197 ~ii~GvllIl~GL 209 (325)
.++.+++.++..+
T Consensus 382 ~~~~~~~~~~~~~ 394 (417)
T d1pv7a_ 382 YLVLGLVALGFTL 394 (417)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444544444443
No 7
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=2.30 E-value=6e+02 Score=14.26 Aligned_cols=14 Identities=36% Similarity=0.531 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHH
Q 020530 165 IAFSLGLATTLALL 178 (325)
Q Consensus 165 l~F~lG~i~ty~lL 178 (325)
++|.+.+..+|..+
T Consensus 17 lafslamlfvfial 30 (34)
T d1xmeb2 17 LAFSLAMLFVFIAL 30 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56666666665543
No 8
>d1nbja_ g.3.3.2 (A:) Cycloviolacin O1 {Plant (Viola odorata) [TaxId: 97441]}
Probab=2.14 E-value=2.8e+02 Score=15.51 Aligned_cols=6 Identities=33% Similarity=0.927 Sum_probs=5.0
Q ss_pred ccCCCC
Q 020530 251 AASPCS 256 (325)
Q Consensus 251 ~~~PC~ 256 (325)
+|.||+
T Consensus 6 v~ipct 11 (30)
T d1nbja_ 6 VYIPCT 11 (30)
T ss_dssp SSSCCS
T ss_pred EEEeee
Confidence 588998
No 9
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=2.14 E-value=1.2e+03 Score=17.36 Aligned_cols=17 Identities=29% Similarity=0.524 Sum_probs=11.1
Q ss_pred CCCCccchHHHHHHHHh
Q 020530 133 LSPCTLSVLPLTLGYIG 149 (325)
Q Consensus 133 lsPCvLpmlPi~la~i~ 149 (325)
+.||++-++-..+++..
T Consensus 9 ilP~~li~~ls~~~F~l 25 (260)
T d1oede_ 9 IAPCVLISSLVVLVYFL 25 (260)
T ss_dssp HTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHheEe
Confidence 45888776666666654
No 10
>d2d8xa1 g.39.1.3 (A:33-64) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.03 E-value=98 Score=18.05 Aligned_cols=16 Identities=38% Similarity=0.791 Sum_probs=8.7
Q ss_pred ccccccceeeecccCCC
Q 020530 4 LINQSVHFSRISCHQRS 20 (325)
Q Consensus 4 ~~~~~~~~~~~~~~~~~ 20 (325)
+-|-.-|.|| .||+++
T Consensus 15 vKnagR~LCr-pch~re 30 (32)
T d2d8xa1 15 VKNAGRHLCR-PCHNRE 30 (32)
T ss_dssp EEETTEEECH-HHHHHH
T ss_pred hhcccccccc-hhhhhc
Confidence 3455556666 565543
Done!