Query 020531
Match_columns 325
No_of_seqs 177 out of 1524
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 04:23:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020531.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020531hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b12_A Signal peptidase I; ser 100.0 7.6E-31 2.6E-35 242.5 9.2 121 198-325 1-209 (248)
2 1umu_A UMUD'; induced mutagene 98.5 2.4E-07 8.1E-12 75.4 7.3 50 205-268 29-79 (116)
3 1kca_A Repressor protein CI; g 98.4 1.1E-06 3.9E-11 71.1 8.1 52 205-269 15-72 (109)
4 1jhf_A LEXA repressor; LEXA SO 98.3 2.3E-06 7.8E-11 75.2 10.0 56 205-275 112-168 (202)
5 2hnf_A Repressor protein CI101 98.2 2.7E-06 9.2E-11 70.9 7.6 56 205-274 46-107 (133)
6 3k2z_A LEXA repressor; winged 98.0 2E-05 6.7E-10 69.4 9.8 55 205-274 111-166 (196)
7 3bdn_A Lambda repressor; repre 97.7 4.6E-05 1.6E-09 67.8 6.2 55 205-272 142-202 (236)
8 2fjr_A Repressor protein CI; g 88.1 0.7 2.4E-05 39.1 5.6 43 218-275 120-162 (189)
9 1w4s_A Polybromo, polybromo 1 31.9 42 0.0014 28.5 4.1 47 214-267 6-52 (174)
10 3fm8_A Kinesin-like protein KI 27.5 1.3E+02 0.0044 24.3 6.1 41 268-312 78-121 (124)
11 2kr7_A FKBP-type peptidyl-prol 25.6 2.2E+02 0.0076 23.3 7.4 60 207-275 66-125 (151)
12 3i4o_A Translation initiation 24.7 32 0.0011 26.2 1.8 12 234-245 53-64 (79)
13 4egx_A Kinesin-like protein KI 24.0 1E+02 0.0036 26.5 5.2 35 276-314 139-173 (184)
14 2jv8_A Uncharacterized protein 22.7 85 0.0029 22.8 3.6 21 267-287 8-29 (73)
15 2dgy_A MGC11102 protein; EIF-1 21.2 64 0.0022 26.0 3.0 9 236-244 55-63 (111)
16 1jt8_A EIF-1A, probable transl 20.9 41 0.0014 26.8 1.8 25 217-243 59-83 (102)
No 1
>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A*
Probab=99.97 E-value=7.6e-31 Score=242.54 Aligned_cols=121 Identities=40% Similarity=0.636 Sum_probs=100.6
Q ss_pred HHHheeeeEEECCCCCCCCCCCCCEEEEEeccccC------------CCCccccEEEEecCCcccccccCCCCeEEEEEE
Q 020531 198 FKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFF------------KRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIV 265 (325)
Q Consensus 198 l~~fv~~~~~I~g~SM~PTL~~GD~VlV~K~s~~~------------~~pkrGDIVVF~~P~~~~~~~y~~g~~~IKRVI 265 (325)
++.|+++++.|+|+||+|||++||+|+|+|.+|++ .++++||||+|+.|.+ ++..+||||+
T Consensus 1 ir~fv~~~~~v~g~SM~Ptl~~GD~vlv~k~~yg~r~P~~~~~l~~~~~~~rGDIvvf~~p~~-------~~~~~iKRVi 73 (248)
T 1b12_A 1 VRSFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPED-------PKLDYIKRAV 73 (248)
T ss_dssp -CBCCEEEEECCSCTTTTTSCTTEEEEEEESEEEEECGGGSCEEEEECCCCTTCEEEEECTTC-------TTSEEEEEEE
T ss_pred CeEEEEEEEEeccccccccccCCCEEEEEecccCcccccccccccccCCCCCCcEEEEEeCCC-------CCceEEEEEE
Confidence 45789999999999999999999999999998753 6899999999998864 4678999999
Q ss_pred EeCCCEEEEeCC--EEEECC-----------eecCccccc---------------------------------------c
Q 020531 266 ATAGDCVEVHGG--KLLVNG-----------VAQDEDFIL---------------------------------------E 293 (325)
Q Consensus 266 GlPGDtV~Ik~g--~lyVNG-----------k~l~e~yi~---------------------------------------~ 293 (325)
|+|||+|+++++ .||||| +.+++.++. +
T Consensus 74 glpGD~v~i~~~~~~l~ING~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~e 153 (248)
T 1b12_A 74 GLPGDKVTYDPVSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSERKE 153 (248)
T ss_dssp ECTTCEEEEETTTTEEEEETTCCSSCCCCCCCCEEECCCEEEEEEEEEECGGGSCEEEEEEECCTTCCCTTEEEEEEEEE
T ss_pred eeCCCEEEEEcCceEEEECCccccccccccceeeeeeccccccccccccccccccccccccccccccccccchhhhhHHh
Confidence 999999999999 999999 655433210 0
Q ss_pred ------------CC----C--C------CCCcEEecCCcEEEEcCCCCCCCCCCCC
Q 020531 294 ------------PL----A--Y------EMDPVVVPEGYVFVLGDNRNNSFDSHNW 325 (325)
Q Consensus 294 ------------p~----~--~------~~~~~~VP~g~yFVLGDNr~nS~DSRyf 325 (325)
+. . + ...+++||+||||||||||++|.|||||
T Consensus 154 ~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~VP~g~yFvmGDNR~nS~DSR~~ 209 (248)
T 1b12_A 154 TLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYW 209 (248)
T ss_dssp EETTEEEEEEECTTCCCCGGGSCCCTTCCTTEEECCTTEEEEECSBTTSCCCHHHH
T ss_pred hhcCccceeEecCCccccccchhcccccccccEEeCCCcEEEecCCCcccCCCCcc
Confidence 00 0 1 1236799999999999999999999997
No 2
>1umu_A UMUD'; induced mutagenesis, SOS mutagenesis, DNA repair, beta- lactamase cleavage reaction, LEXA repressor, lambda CI; 2.50A {Escherichia coli} SCOP: b.87.1.1 PDB: 1i4v_A 1ay9_A
Probab=98.49 E-value=2.4e-07 Score=75.37 Aligned_cols=50 Identities=20% Similarity=0.274 Sum_probs=43.6
Q ss_pred eEEECCCCCCC-CCCCCCEEEEEeccccCCCCccccEEEEecCCcccccccCCCCeEEEEEEEeC
Q 020531 205 PRSIPSASMNP-TLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATA 268 (325)
Q Consensus 205 ~~~I~g~SM~P-TL~~GD~VlV~K~s~~~~~pkrGDIVVF~~P~~~~~~~y~~g~~~IKRVIGlP 268 (325)
.+.|.|+||+| +|++||+|++++. .+++.||+|++.. +++.++||++..+
T Consensus 29 ~~~v~GdSM~p~~i~~Gd~v~vd~~----~~~~~gdivv~~~----------~~~~~vKr~~~~~ 79 (116)
T 1umu_A 29 FVKASGDSMIDGGISDGDLLIVDSA----ITASHGDIVIAAV----------DGEFTVKKLQLRP 79 (116)
T ss_dssp EEECCSSTTGGGTCCTTCEEEEETT----SCCCTTCEEEEEE----------TTEEEEEEEECSS
T ss_pred EEEECCCCcCCCCCCCCCEEEEEcC----CCCCCCCEEEEEE----------CCEEEEEEEEeCC
Confidence 46899999999 8999999999986 4689999999986 3568999999875
No 3
>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1
Probab=98.36 E-value=1.1e-06 Score=71.10 Aligned_cols=52 Identities=23% Similarity=0.319 Sum_probs=44.1
Q ss_pred eEEECCCCCC------CCCCCCCEEEEEeccccCCCCccccEEEEecCCcccccccCCCCeEEEEEEEeCC
Q 020531 205 PRSIPSASMN------PTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAG 269 (325)
Q Consensus 205 ~~~I~g~SM~------PTL~~GD~VlV~K~s~~~~~pkrGDIVVF~~P~~~~~~~y~~g~~~IKRVIGlPG 269 (325)
.++|.|+||+ |+|++||+|++++. .+++.||+|++..+. ++.++||++..+|
T Consensus 15 ~~~V~GdSM~~~~g~~p~i~~Gd~v~Vd~~----~~~~~Gdivv~~~~~---------~~~~vKrl~~~~~ 72 (109)
T 1kca_A 15 WLEVEGNSMTAPTGSKPSFPDGMLILVDPE----QAVEPGDFCIARLGG---------DEFTFKKLIRDSG 72 (109)
T ss_dssp EEECCSSTTCCCTTCSSCCCTTCEEEEETT----SCCCTTCEEEEECST---------TCEEEEEEEEETT
T ss_pred EEEEeCcCcCCCCCCCCeeCCCCEEEEecC----CcCCCCCEEEEEECC---------CeEEEEEEEEeCC
Confidence 4689999999 99999999999986 469999999998732 4789999997644
No 4
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=98.33 E-value=2.3e-06 Score=75.23 Aligned_cols=56 Identities=23% Similarity=0.331 Sum_probs=48.1
Q ss_pred eEEECCCCCCCC-CCCCCEEEEEeccccCCCCccccEEEEecCCcccccccCCCCeEEEEEEEeCCCEEEEe
Q 020531 205 PRSIPSASMNPT-LDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVH 275 (325)
Q Consensus 205 ~~~I~g~SM~PT-L~~GD~VlV~K~s~~~~~pkrGDIVVF~~P~~~~~~~y~~g~~~IKRVIGlPGDtV~Ik 275 (325)
.+.|.|+||+|+ |.+||+|+|++. .+++.||+|++.. +++.+|||+. .+|+.+.+.
T Consensus 112 ~~~v~GdSM~p~~i~~Gd~v~vd~~----~~~~~G~i~v~~~----------~~~~~vKrl~-~~~~~~~l~ 168 (202)
T 1jhf_A 112 LLRVSGMSMKDIGIMDGDLLAVHKT----QDVRNGQVVVARI----------DDEVTVKRLK-KQGNKVELL 168 (202)
T ss_dssp EEECCSSTTGGGTCCTTCEEEEEEC----SCCCTTSEEEEEE----------TTEEEEEEEE-EETTEEEEE
T ss_pred EEEECCCCCCCCCCCCCCEEEEecc----CCcCCCeEEEEEE----------CCEEEEEEEE-EeCCEEEEE
Confidence 467899999999 999999999885 4689999999986 3578999999 688887765
No 5
>2hnf_A Repressor protein CI101-229DM-K192A; viral protein; 1.80A {Escherichia coli} PDB: 2ho0_A 1f39_A
Probab=98.22 E-value=2.7e-06 Score=70.85 Aligned_cols=56 Identities=20% Similarity=0.236 Sum_probs=45.3
Q ss_pred eEEECCCCCC------CCCCCCCEEEEEeccccCCCCccccEEEEecCCcccccccCCCCeEEEEEEEeCCCEEEE
Q 020531 205 PRSIPSASMN------PTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEV 274 (325)
Q Consensus 205 ~~~I~g~SM~------PTL~~GD~VlV~K~s~~~~~pkrGDIVVF~~P~~~~~~~y~~g~~~IKRVIGlPGDtV~I 274 (325)
.++|.|+||+ |+|++||+|+|++. .+++.||+|++..+ .++.++||++-.+| .+.+
T Consensus 46 ~~~V~GdSM~~~~g~~p~i~~Gd~v~vd~~----~~~~~Gdivv~~~~---------~~~~~vKrl~~~~~-~~~L 107 (133)
T 2hnf_A 46 WLEVEGNSMTTPTGSKTSFPDGMLILVDPE----QAVEPGDFCIARLG---------GDEFTFAKLIRDSG-QVFL 107 (133)
T ss_dssp EEECCSSTTCCC---CCCCCTTCEEEEETT----SCCCTTSEEEEEET---------TTEEEEEEEEEETT-EEEE
T ss_pred EEEEeCCCcCCCcCCCCccCCCCEEEEccC----CCCCCCCEEEEEEC---------CCEEEEEEEEEeCC-eEEE
Confidence 4678999999 99999999999985 47899999999863 24689999996544 4443
No 6
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=98.04 E-value=2e-05 Score=69.43 Aligned_cols=55 Identities=22% Similarity=0.309 Sum_probs=44.5
Q ss_pred eEEECCCCC-CCCCCCCCEEEEEeccccCCCCccccEEEEecCCcccccccCCCCeEEEEEEEeCCCEEEE
Q 020531 205 PRSIPSASM-NPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEV 274 (325)
Q Consensus 205 ~~~I~g~SM-~PTL~~GD~VlV~K~s~~~~~pkrGDIVVF~~P~~~~~~~y~~g~~~IKRVIGlPGDtV~I 274 (325)
...|.|+|| +|++.+||+|+|++. .+++.||+|++.. +++..+||+.-.+| .+.+
T Consensus 111 ~l~v~GdSM~~p~i~~GD~viv~~~----~~~~~G~ivv~~~----------~~~~~vKr~~~~~~-~~~L 166 (196)
T 3k2z_A 111 LLKVKGESMIEEHICDGDLVLVRRQ----DWAQNGDIVAAMV----------DGEVTLAKFYQRGD-TVEL 166 (196)
T ss_dssp EEECCSSTTGGGTCCTTCEEEEEEC----SCCCTTCEEEEEE----------TTEEEEEEEEEETT-EEEE
T ss_pred EEEEeCCCcCCCCCCCCCEEEEecc----CcCCCCCEEEEEE----------CCcEEEEEEEEECC-EEEE
Confidence 468999999 699999999999986 4789999999986 35789999976533 4433
No 7
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=97.70 E-value=4.6e-05 Score=67.84 Aligned_cols=55 Identities=22% Similarity=0.313 Sum_probs=45.3
Q ss_pred eEEECCCCCC------CCCCCCCEEEEEeccccCCCCccccEEEEecCCcccccccCCCCeEEEEEEEeCCCEE
Q 020531 205 PRSIPSASMN------PTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCV 272 (325)
Q Consensus 205 ~~~I~g~SM~------PTL~~GD~VlV~K~s~~~~~pkrGDIVVF~~P~~~~~~~y~~g~~~IKRVIGlPGDtV 272 (325)
.+.|.|+||+ |+|.+||+|+|++. .+++.||+|++... .+..+|||+.-.+|..+
T Consensus 142 ~l~V~GdSM~~~~g~~P~i~~Gd~v~vd~~----~~~~~g~ivv~~~~---------~~~~~vKrl~~~~~~~~ 202 (236)
T 3bdn_A 142 WLEVEGNSMTAPTGSKPSFPDGMLILVDPE----QAVEPGDFCIARLG---------GDEFTFKKLIRGSGQVF 202 (236)
T ss_dssp EEECCSSSSCCCSSCSSCCCSSCEEEECCS----SCCCTTSEEEEEST---------TTCCCCEEEECCSSSCE
T ss_pred EEEEeCCCcCCCCCCCCcCCCCCEEEECCC----CCCCCCcEEEEEEC---------CCeEEEEEEEEcCCcEE
Confidence 3578999999 99999999999875 37899999999863 25688999997665544
No 8
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=88.15 E-value=0.7 Score=39.11 Aligned_cols=43 Identities=14% Similarity=0.244 Sum_probs=35.2
Q ss_pred CCCCEEEEEeccccCCCCccccEEEEecCCcccccccCCCCeEEEEEEEeCCCEEEEe
Q 020531 218 DVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVH 275 (325)
Q Consensus 218 ~~GD~VlV~K~s~~~~~pkrGDIVVF~~P~~~~~~~y~~g~~~IKRVIGlPGDtV~Ik 275 (325)
.+||+|+|++. ++..|+++++.. +++.+|||+.-.+|+.+.+.
T Consensus 120 ~~Gd~v~Vd~~-----~~~~g~i~vv~~----------~g~~~vKrl~~~~~~~i~L~ 162 (189)
T 2fjr_A 120 SEGKIYFVDKQ-----ASLSDGLWLVDI----------KGAISIRELTKLPGRKLHVA 162 (189)
T ss_dssp ETTEEEEEETT-----CCSCSEEEEEEE----------TTEEEEEEEEEETTTEEEEE
T ss_pred eCCcEEEEEcC-----CccCCCEEEEEe----------CCeEEEEEEEECCCCEEEEE
Confidence 78999999874 366799999986 45789999998888887764
No 9
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=31.85 E-value=42 Score=28.46 Aligned_cols=47 Identities=17% Similarity=0.071 Sum_probs=20.2
Q ss_pred CCCCCCCCEEEEEeccccCCCCccccEEEEecCCcccccccCCCCeEEEEEEEe
Q 020531 214 NPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVAT 267 (325)
Q Consensus 214 ~PTL~~GD~VlV~K~s~~~~~pkrGDIVVF~~P~~~~~~~y~~g~~~IKRVIGl 267 (325)
+|-...+++.+.....+.-..++.||-|.+..++. ....+|-||..+
T Consensus 6 ~~~~~~~~r~~y~~~~~~g~~~~vGD~V~v~~~~~-------~~~p~I~rI~~i 52 (174)
T 1w4s_A 6 SAGLSSLHRTYSQDCSFKNSMYHVGDYVYVEPAEA-------NLQPHIVCIERL 52 (174)
T ss_dssp --------------------CCCTTCEEEECCSST-------TSCCEEEEEEEE
T ss_pred CccccCCCcEEeEEEEECCEEEECCCEEEEeCCCC-------CCCCEEEEEEEE
Confidence 35555566666665555556789999999987642 345778888754
No 10
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=27.46 E-value=1.3e+02 Score=24.28 Aligned_cols=41 Identities=20% Similarity=0.226 Sum_probs=22.5
Q ss_pred CCCEEEEe---CCEEEECCeecCccccccCCCCCCCcEEecCCcEEEE
Q 020531 268 AGDCVEVH---GGKLLVNGVAQDEDFILEPLAYEMDPVVVPEGYVFVL 312 (325)
Q Consensus 268 PGDtV~Ik---~g~lyVNGk~l~e~yi~~p~~~~~~~~~VP~g~yFVL 312 (325)
+++.+.++ .+..||||+++.++..... -..+.+-..++|..
T Consensus 78 ~~g~~~l~dl~~ngt~VNG~~V~~~~~L~~----GD~I~lG~~~~FrF 121 (124)
T 3fm8_A 78 SEGQVMLTPQKNTRTFVNGSSVSSPIQLHH----GDRILWGNNHFFRL 121 (124)
T ss_dssp TTSCEEEEECTTCCEEETTEECCSCEEECT----TCEEEETTTEEEEE
T ss_pred CCCeEEEEECCCCCEEECCEEcCCcEECCC----CCEEEECCCeEEEE
Confidence 34445554 3679999999975432221 12345555555544
No 11
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=25.58 E-value=2.2e+02 Score=23.34 Aligned_cols=60 Identities=10% Similarity=-0.082 Sum_probs=37.7
Q ss_pred EECCCCCCCCCCCCCEEEEEeccccCCCCccccEEEEecCCcccccccCCCCeEEEEEEEeCCCEEEEe
Q 020531 207 SIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVH 275 (325)
Q Consensus 207 ~I~g~SM~PTL~~GD~VlV~K~s~~~~~pkrGDIVVF~~P~~~~~~~y~~g~~~IKRVIGlPGDtV~Ik 275 (325)
.|+-.--+..-.++-+..+.+-.+.-.+++.|+.+.+..++ +..+.-+|..+-+|+|.+.
T Consensus 66 ~ipp~~aYG~~~~~~v~~v~~~~f~~~~~~~G~~~~~~~~~---------G~~~~~~V~~v~~~~v~vD 125 (151)
T 2kr7_A 66 VIAPEEAYGVYESSYLQEVPRDQFEGIELEKGMSVFGQTED---------NQTIQAIIKDFSATHVMVD 125 (151)
T ss_dssp EECGGGTTCSSCSCEEEEEEGGGGTTSCCCTTCEEEEEETT---------TEEEEEEEEEECSSEEEEE
T ss_pred EEecHHHcCCCCcceEEEEcHHHcCCCCCccCCEEEEECCC---------CCEEEEEEEEECCCEEEEE
Confidence 34433333333334445555544422368899999998753 5567788898888988886
No 12
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=24.66 E-value=32 Score=26.18 Aligned_cols=12 Identities=25% Similarity=0.163 Sum_probs=7.5
Q ss_pred CCccccEEEEec
Q 020531 234 RPEVSDIVIFRA 245 (325)
Q Consensus 234 ~pkrGDIVVF~~ 245 (325)
.+..||.|.+..
T Consensus 53 ~Il~GD~V~ve~ 64 (79)
T 3i4o_A 53 RILPEDRVVVEL 64 (79)
T ss_dssp CCCTTCEEEEEE
T ss_pred cCCCCCEEEEEE
Confidence 356677776654
No 13
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=23.96 E-value=1e+02 Score=26.51 Aligned_cols=35 Identities=26% Similarity=0.382 Sum_probs=23.1
Q ss_pred CCEEEECCeecCccccccCCCCCCCcEEecCCcEEEEcC
Q 020531 276 GGKLLVNGVAQDEDFILEPLAYEMDPVVVPEGYVFVLGD 314 (325)
Q Consensus 276 ~g~lyVNGk~l~e~yi~~p~~~~~~~~~VP~g~yFVLGD 314 (325)
+..+||||+.+.++..... -..+.+...|+|...+
T Consensus 139 ~a~t~VNG~~I~~~~~L~~----GDrI~lG~~h~Frfn~ 173 (184)
T 4egx_A 139 GADTYVNGKKVTEPSILRS----GNRIIMGKSHVFRFNH 173 (184)
T ss_dssp TCCEEETTEECCSCEECCT----TCEEEETTTEEEEEEC
T ss_pred CCeEEEcCEEccccEEcCC----CCEEEECCCCEEEECC
Confidence 4579999999976544321 1346677777777654
No 14
>2jv8_A Uncharacterized protein NE1242; solution structure, NESG, structural genomics, unknown function, PSI-2; NMR {Nitrosomonas europaea atcc 19718}
Probab=22.70 E-value=85 Score=22.83 Aligned_cols=21 Identities=19% Similarity=0.406 Sum_probs=16.8
Q ss_pred eCCCEEEEeC-CEEEECCeecC
Q 020531 267 TAGDCVEVHG-GKLLVNGVAQD 287 (325)
Q Consensus 267 lPGDtV~Ik~-g~lyVNGk~l~ 287 (325)
.+|.++.|.+ ..+.|||+.+.
T Consensus 8 feggtidieddtsltingkeis 29 (73)
T 2jv8_A 8 FEGGTIDIEDDTSLTINGKEIS 29 (73)
T ss_dssp ETTEEEEEETTEEEEETTEECC
T ss_pred ecCCeeeeccCceeEECCEEee
Confidence 4788999985 55889999874
No 15
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.22 E-value=64 Score=25.97 Aligned_cols=9 Identities=22% Similarity=0.405 Sum_probs=4.3
Q ss_pred ccccEEEEe
Q 020531 236 EVSDIVIFR 244 (325)
Q Consensus 236 krGDIVVF~ 244 (325)
++||+|+..
T Consensus 55 ~~GD~VlVe 63 (111)
T 2dgy_A 55 KRGDFLIVD 63 (111)
T ss_dssp CSSCEEEEE
T ss_pred cCCCEEEEE
Confidence 345544444
No 16
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=20.91 E-value=41 Score=26.77 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=15.5
Q ss_pred CCCCCEEEEEeccccCCCCccccEEEE
Q 020531 217 LDVGDRILAEKVSYFFKRPEVSDIVIF 243 (325)
Q Consensus 217 L~~GD~VlV~K~s~~~~~pkrGDIVVF 243 (325)
+..||+|+|+...|. +..+|||+--
T Consensus 59 I~~GD~VlVe~~~yd--~~~Kg~Iv~r 83 (102)
T 1jt8_A 59 VREGDVVIVKPWEVQ--GDQKCDIIWR 83 (102)
T ss_dssp CCSCEEEEECCBCCT--TSEEEEEEEE
T ss_pred ecCCCEEEEEeccCC--CCceEEEEEE
Confidence 346888888766542 2566776544
Done!