BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020532
         (325 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|225448273|ref|XP_002274470.1| PREDICTED: alternative oxidase, mitochondrial [Vitis vinifera]
          Length = 320

 Score =  522 bits (1345), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 251/325 (77%), Positives = 279/325 (85%), Gaps = 5/325 (1%)

Query: 1   MNQLVAMSVMRGLINGRKHSIGYARTVVRCHPNVWDGDDMPLLGLRMMVMMSSYSSSSES 60
           MNQLVA S+MRGLING K +     +V R        D+    G RMM   ++ +  ++ 
Sbjct: 1   MNQLVARSLMRGLINGAKCNRSILCSVTRVELR----DEKAAFG-RMMSTETALAEKNQK 55

Query: 61  VPEKVKEKGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPT 120
                + + ++ +V SSYWGI RPKITREDGSPWPWNCFMPWETY AD +IDL KHHVP 
Sbjct: 56  EKSVEEVEKQSKVVFSSYWGIQRPKITREDGSPWPWNCFMPWETYHADTAIDLSKHHVPK 115

Query: 121 TFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSG 180
           TF+DKVAYRTVKLLRIPTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLHL+SLRKF+HSG
Sbjct: 116 TFVDKVAYRTVKLLRIPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKFEHSG 175

Query: 181 GWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVV 240
           GW+KALLEEAENERMHLMTMVELV+PKWYER+LVLTVQGVFFNAFFVLY+LSPK AHRVV
Sbjct: 176 GWVKALLEEAENERMHLMTMVELVRPKWYERLLVLTVQGVFFNAFFVLYVLSPKAAHRVV 235

Query: 241 GYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRD 300
           GYLEEEAIHSYTE+LKDIDSG+IENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRD
Sbjct: 236 GYLEEEAIHSYTEFLKDIDSGAIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRD 295

Query: 301 VNHFASDIQFQGKELRDAPAPLGYH 325
           VNHFASDI FQGK+L +APAP+GYH
Sbjct: 296 VNHFASDIHFQGKKLNEAPAPIGYH 320


>gi|171198301|gb|ACB45425.1| mitochondrial alternative oxidase 2 [Vitis vinifera]
          Length = 320

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 251/325 (77%), Positives = 278/325 (85%), Gaps = 5/325 (1%)

Query: 1   MNQLVAMSVMRGLINGRKHSIGYARTVVRCHPNVWDGDDMPLLGLRMMVMMSSYSSSSES 60
           MNQLVA S+MRGLING K +     +V R        D+    G RMM   ++ +  ++ 
Sbjct: 1   MNQLVARSLMRGLINGAKCNRSILCSVTRVELR----DEKAAFG-RMMSTETALAEKNQK 55

Query: 61  VPEKVKEKGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPT 120
                + + ++ +V SSYWGI RPKITREDGSPWPWNCFMPWETY AD +IDL KHHVP 
Sbjct: 56  EKSVEEVEKQSKVVFSSYWGIQRPKITREDGSPWPWNCFMPWETYHADTAIDLSKHHVPK 115

Query: 121 TFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSG 180
           TF DKVAYRTVKLLRIPTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLHL+SLRKF+HSG
Sbjct: 116 TFADKVAYRTVKLLRIPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKFEHSG 175

Query: 181 GWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVV 240
           GW+KALLEEAENERMHLMTMVELV+PKWYER+LVLTVQGVFFNAFFVLY+LSPK AHRVV
Sbjct: 176 GWVKALLEEAENERMHLMTMVELVRPKWYERLLVLTVQGVFFNAFFVLYVLSPKAAHRVV 235

Query: 241 GYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRD 300
           GYLEEEAIHSYTE+LKDIDSG+IENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRD
Sbjct: 236 GYLEEEAIHSYTEFLKDIDSGAIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRD 295

Query: 301 VNHFASDIQFQGKELRDAPAPLGYH 325
           VNHFASDI FQGK+L +APAP+GYH
Sbjct: 296 VNHFASDIHFQGKKLNEAPAPIGYH 320


>gi|3915618|sp|Q40294.2|AOX1_MANIN RecName: Full=Ubiquinol oxidase, mitochondrial; AltName:
           Full=Alternative oxidase; Flags: Precursor
          Length = 318

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 245/320 (76%), Positives = 280/320 (87%), Gaps = 3/320 (0%)

Query: 7   MSVMRGLINGRKHSIGYARTVVRC-HPNVWDGDDMPLLGLRMMVMMSSYSSSSESVPEKV 65
           M+VMRGL+NG ++   Y  T +   HP V +G+ +    ++   M+S+   +   V E+ 
Sbjct: 1   MTVMRGLLNGGRYGNRYIWTAISLRHPEVMEGNGLESAVMQWRRMLSNAGGAEAQVKEQK 60

Query: 66  KEKGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDK 125
           +EK +  +  S+YWGISRPKITREDGS WPWNCFMPWETYR+DLSIDLKKHHVP TF+DK
Sbjct: 61  EEKKDAMV--SNYWGISRPKITREDGSEWPWNCFMPWETYRSDLSIDLKKHHVPRTFMDK 118

Query: 126 VAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKA 185
            AYRTVK+LR+PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRK + SGGWIKA
Sbjct: 119 FAYRTVKILRVPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKLEQSGGWIKA 178

Query: 186 LLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEE 245
           LLEEAENERMHLMTMVELV+PKWYER+LVL VQGVFFN+FFVLY+LSPKLAHR+VGYLEE
Sbjct: 179 LLEEAENERMHLMTMVELVQPKWYERLLVLAVQGVFFNSFFVLYVLSPKLAHRIVGYLEE 238

Query: 246 EAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFA 305
           EAIHSYTEYLKDIDSG+I+N+PAPAIAIDYWRLPKDATLKDVITV+RADEAHHRDVNHFA
Sbjct: 239 EAIHSYTEYLKDIDSGAIKNIPAPAIAIDYWRLPKDATLKDVITVVRADEAHHRDVNHFA 298

Query: 306 SDIQFQGKELRDAPAPLGYH 325
           SD+Q QGKELRDAPAP+GYH
Sbjct: 299 SDVQVQGKELRDAPAPVGYH 318


>gi|283488059|gb|ADB24723.1| mitochondrial alternative oxidase 2a [Daucus carota]
 gi|283488061|gb|ADB24724.1| mitochondrial alternative oxidase 2a [Daucus carota]
          Length = 338

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 256/338 (75%), Positives = 281/338 (83%), Gaps = 13/338 (3%)

Query: 1   MNQLVAMSVMRGLING----RKHSIGYARTVVRCHPNVWDGDDMPLLGLR------MMVM 50
           MN L+A SVMR LI+G    R  S   A T+ R            L+ +R      M  M
Sbjct: 1   MNHLLAKSVMRRLISGGGSIRSASPAPALTIFRAVTESATARRESLVYVRGGGVELMKRM 60

Query: 51  MSSYSSSSESVPEKVKEKGEN---GIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRA 107
           MSS +       ++VKE+ +     +V SSYWG++RP+IT+EDG+ WPWNCFMPWETY+A
Sbjct: 61  MSSEAVKVTEEKKEVKEEKKKSESNVVVSSYWGVARPRITKEDGTEWPWNCFMPWETYQA 120

Query: 108 DLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGML 167
           DLSIDL KHHVP TFLDKVAY+TVKLLRIPTD+FFQRRYGCRAMMLETVAAVPGMVGGML
Sbjct: 121 DLSIDLGKHHVPKTFLDKVAYKTVKLLRIPTDVFFQRRYGCRAMMLETVAAVPGMVGGML 180

Query: 168 LHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFV 227
           LHL+SLRKFQ SGGWIKALLEEAENERMHLMTMVELVKPKWYER LVLTVQGVFFNAFFV
Sbjct: 181 LHLRSLRKFQQSGGWIKALLEEAENERMHLMTMVELVKPKWYERFLVLTVQGVFFNAFFV 240

Query: 228 LYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDV 287
           LY++SPK+AHRVVGYLEEEAIHSYTEYLKDI+SG+IENVPAPAIAIDYWRLPKDA LKDV
Sbjct: 241 LYMMSPKVAHRVVGYLEEEAIHSYTEYLKDIESGAIENVPAPAIAIDYWRLPKDAKLKDV 300

Query: 288 ITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           ITVIRADEAHHRDVNHFASDI FQGKELRDAPAPLGYH
Sbjct: 301 ITVIRADEAHHRDVNHFASDIHFQGKELRDAPAPLGYH 338


>gi|122058944|gb|ABM66368.1| mitochondrial alternative oxidase 2a [Vigna unguiculata]
          Length = 329

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 245/324 (75%), Positives = 269/324 (83%), Gaps = 3/324 (0%)

Query: 5   VAMSVMRGLINGRK-HSIGYARTVVRCHPNVWDGDDMPLLGLRMMVMMSSYSSSSESVPE 63
           ++ +V R L+NGR  + +G    +    P           G       S  S +   +PE
Sbjct: 6   LSCTVRRALLNGRNCNGLGSTAVMAYAAPETRFLCAGAANGGLFYWRRSMASQAEAKLPE 65

Query: 64  KVKEKGE--NGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTT 121
           K KEK E    +V SSYWGISRPKI REDG+ WPWNCFMPWETY ++LSIDL KHHVP  
Sbjct: 66  KDKEKAEAEKSVVESSYWGISRPKIMREDGTEWPWNCFMPWETYHSNLSIDLTKHHVPKN 125

Query: 122 FLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGG 181
           FLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHL+SLRKFQ SGG
Sbjct: 126 FLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKFQQSGG 185

Query: 182 WIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVG 241
           WIKAL+EEAENERMHLMTMVELVKPKWYER+LV+ VQGVFFNAFFVLY+LSPK+AHR+VG
Sbjct: 186 WIKALMEEAENERMHLMTMVELVKPKWYERLLVIAVQGVFFNAFFVLYILSPKVAHRIVG 245

Query: 242 YLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDV 301
           YLEEEAIHSYTEYLKDI+SG+IENVPAPAIAIDYWRLPKDA LKDVITVIRADEAHHRDV
Sbjct: 246 YLEEEAIHSYTEYLKDIESGAIENVPAPAIAIDYWRLPKDAKLKDVITVIRADEAHHRDV 305

Query: 302 NHFASDIQFQGKELRDAPAPLGYH 325
           NHFASDI FQGKELR+APAP+GYH
Sbjct: 306 NHFASDIHFQGKELREAPAPIGYH 329


>gi|14572654|emb|CAC42836.1| putative alternative oxidase [Vigna unguiculata]
          Length = 329

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 244/324 (75%), Positives = 269/324 (83%), Gaps = 3/324 (0%)

Query: 5   VAMSVMRGLINGRK-HSIGYARTVVRCHPNVWDGDDMPLLGLRMMVMMSSYSSSSESVPE 63
           ++ +V R L+NGR  + +G    +    P           G       S  S +   +PE
Sbjct: 6   LSCTVRRALLNGRNCNGLGSTAVMAYAAPETRFLCAGAANGGLFYWRRSMASQAEAKLPE 65

Query: 64  KVKEKGE--NGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTT 121
           K KEK E    +V SSYWGISRP+I REDG+ WPWNCFMPWETY ++LSIDL KHHVP  
Sbjct: 66  KDKEKAEAEKSVVESSYWGISRPRIMREDGTEWPWNCFMPWETYHSNLSIDLTKHHVPKN 125

Query: 122 FLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGG 181
           FLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHL+SLRKFQ SGG
Sbjct: 126 FLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKFQQSGG 185

Query: 182 WIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVG 241
           WIKAL+EEAENERMHLMTMVELVKPKWYER+LV+ VQGVFFNAFFVLY+LSPK+AHR+VG
Sbjct: 186 WIKALMEEAENERMHLMTMVELVKPKWYERLLVIAVQGVFFNAFFVLYILSPKVAHRIVG 245

Query: 242 YLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDV 301
           YLEEEAIHSYTEYLKDI+SG+IENVPAPAIAIDYWRLPKDA LKDVITVIRADEAHHRDV
Sbjct: 246 YLEEEAIHSYTEYLKDIESGAIENVPAPAIAIDYWRLPKDAKLKDVITVIRADEAHHRDV 305

Query: 302 NHFASDIQFQGKELRDAPAPLGYH 325
           NHFASDI FQGKELR+APAP+GYH
Sbjct: 306 NHFASDIHFQGKELREAPAPIGYH 329


>gi|344190170|gb|AEM97867.1| mitochondrial alternative oxidase 1A [Corylus heterophylla]
          Length = 326

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 246/332 (74%), Positives = 277/332 (83%), Gaps = 13/332 (3%)

Query: 1   MNQLVAMSVMRGLINGRKHSIGYARTVVRCHPNVWDGDDMPLLGLRMMVMMSSYSS---- 56
           MN+ VA S+MRGLI+G +HS     + VR H +V       L G      MSS +     
Sbjct: 1   MNRFVARSLMRGLIDGSEHS-RRGISTVREHQSV-----GALGGFYWTRAMSSVAPGPTT 54

Query: 57  ---SSESVPEKVKEKGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDL 113
              S +       +K +   V SSYWG+SRP+I REDG+ WPWNCFMPWE+Y+ADLSIDL
Sbjct: 55  TTVSEKKEKGAEAKKSDETAVVSSYWGVSRPRIKREDGTEWPWNCFMPWESYKADLSIDL 114

Query: 114 KKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSL 173
           +KHHVP  FLDKVAYRTVKLLRIPTD+FF+RRYGCRAMMLETVAAVPGMVGGMLLHL+SL
Sbjct: 115 QKHHVPKVFLDKVAYRTVKLLRIPTDIFFKRRYGCRAMMLETVAAVPGMVGGMLLHLRSL 174

Query: 174 RKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSP 233
           RKF+HSGGWIKALLEEAENERMHLMTMVELVKPKWYER+LVLTVQGVFFNA+F+ YLLSP
Sbjct: 175 RKFEHSGGWIKALLEEAENERMHLMTMVELVKPKWYERLLVLTVQGVFFNAYFIAYLLSP 234

Query: 234 KLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRA 293
           KLAHR+VGYLEEEAIHSYTEYLKDI SG+IENV APAIAIDYW+LPKDATL+DV+TVIRA
Sbjct: 235 KLAHRIVGYLEEEAIHSYTEYLKDITSGAIENVQAPAIAIDYWKLPKDATLEDVVTVIRA 294

Query: 294 DEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           DEAHHRDVNHFA+DI FQGKELRD+PAP+GYH
Sbjct: 295 DEAHHRDVNHFAADIHFQGKELRDSPAPVGYH 326


>gi|488826|emb|CAA55892.1| alternative oxidase [Mangifera indica]
          Length = 274

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 231/276 (83%), Positives = 256/276 (92%), Gaps = 2/276 (0%)

Query: 50  MMSSYSSSSESVPEKVKEKGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADL 109
           M+S+   +   V E+ +EK +  +  S+YWGISRPKITREDGS WPWNCFMPWETYR+DL
Sbjct: 1   MLSNAGGAEAQVKEQKEEKKDAMV--SNYWGISRPKITREDGSEWPWNCFMPWETYRSDL 58

Query: 110 SIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLH 169
           SIDLKKHHVP TF+DK AYRTVK+LR+PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH
Sbjct: 59  SIDLKKHHVPRTFMDKFAYRTVKILRVPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLH 118

Query: 170 LKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLY 229
           LKSLRK + SGGWIKALLEEAENERMHLMTMVELV+PKWYER+LVL VQGVFFN+FFVLY
Sbjct: 119 LKSLRKLEQSGGWIKALLEEAENERMHLMTMVELVQPKWYERLLVLAVQGVFFNSFFVLY 178

Query: 230 LLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVIT 289
           +LSPKLAHR+VGYLEEEAIHSYTEYLKDIDSG+I+N+PAPAIAIDYWRLPKDATLKDVIT
Sbjct: 179 VLSPKLAHRIVGYLEEEAIHSYTEYLKDIDSGAIKNIPAPAIAIDYWRLPKDATLKDVIT 238

Query: 290 VIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           V+RADEAHHRDVNHFASD+Q QGKELRDAPAP+GYH
Sbjct: 239 VVRADEAHHRDVNHFASDVQVQGKELRDAPAPVGYH 274


>gi|225571961|gb|ABZ81229.2| mitochondrial alternative oxidase 2a [Daucus carota]
          Length = 329

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 230/253 (90%), Positives = 245/253 (96%)

Query: 73  IVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVK 132
           +V SSYWG++RP+IT+EDG+ WPWNCFMPWETY+ADLSIDL KHHVP TFLDKVAY+TVK
Sbjct: 77  VVVSSYWGVARPRITKEDGTEWPWNCFMPWETYQADLSIDLGKHHVPKTFLDKVAYKTVK 136

Query: 133 LLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAEN 192
           LLRIPTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLHL+SLRKFQ SGGWIKALLEEAEN
Sbjct: 137 LLRIPTDVFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKFQQSGGWIKALLEEAEN 196

Query: 193 ERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYT 252
           ERMHLMTMVELVKPKWYER LVLTVQGVFFNAFFVLY++SPK+AHRVVGYLEEEAIHSYT
Sbjct: 197 ERMHLMTMVELVKPKWYERFLVLTVQGVFFNAFFVLYMMSPKVAHRVVGYLEEEAIHSYT 256

Query: 253 EYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQG 312
           EYLKDI+SG+IENVPAPAIAIDYWRLPKDA LKDVITVIRADEAHHRDVNHFASDI FQG
Sbjct: 257 EYLKDIESGAIENVPAPAIAIDYWRLPKDAKLKDVITVIRADEAHHRDVNHFASDIHFQG 316

Query: 313 KELRDAPAPLGYH 325
           KELRDAPAPLGYH
Sbjct: 317 KELRDAPAPLGYH 329


>gi|291245406|gb|ADD84880.1| mitochondrial AOX2 [Citrullus lanatus]
          Length = 349

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 251/357 (70%), Positives = 277/357 (77%), Gaps = 40/357 (11%)

Query: 1   MNQLVAMSVMRGLINGRKH---------------SIGYARTV---VRCHPNVWDGDDMPL 42
           MN++   S +RGL+N R                  + +A       R  P V DG     
Sbjct: 1   MNRIAIRSFVRGLVNSRSFGSVAGVAGGGSGGGMKVTFAAVASPGTRYQPMV-DG----- 54

Query: 43  LGLRMMVMMSSYSSSSESV--------------PEKVKEKGENGIVPSSYWGISRPKITR 88
            G +   ++SS ++ +E                 EK +++ EN +V SSYWGI RPKITR
Sbjct: 55  -GFQWRRLLSSSTAVTEEQGKVKLEQGIKDIENQEKKEKETENALV-SSYWGIYRPKITR 112

Query: 89  EDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGC 148
           EDGS WPWNCFMPWETYRADLSIDL KHH P TFLDKVAYR VKLLRIPTD+FFQRRYGC
Sbjct: 113 EDGSEWPWNCFMPWETYRADLSIDLGKHHEPKTFLDKVAYRVVKLLRIPTDIFFQRRYGC 172

Query: 149 RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKW 208
           RA+MLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTM+ELV+PKW
Sbjct: 173 RAVMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMIELVQPKW 232

Query: 209 YERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPA 268
           YER+LV+TVQGVFFNAFFVLYL+SPKLAHR+VGYLEEEAIHSYTEYLKDID G IENVPA
Sbjct: 233 YERLLVITVQGVFFNAFFVLYLMSPKLAHRIVGYLEEEAIHSYTEYLKDIDEGKIENVPA 292

Query: 269 PAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           PAIAIDYWRLPKDA LKDVITVIRADEAHHRDVNHFASDI FQGKELR++  PLGYH
Sbjct: 293 PAIAIDYWRLPKDARLKDVITVIRADEAHHRDVNHFASDIHFQGKELRESAVPLGYH 349


>gi|345505255|gb|AEN99850.1| mitochondrial AOX2 [Citrullus lanatus]
          Length = 349

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 252/357 (70%), Positives = 278/357 (77%), Gaps = 40/357 (11%)

Query: 1   MNQLVAMSVMRGLINGRKH---------------SIGYARTV---VRCHPNVWDGDDMPL 42
           MN++V  S +RGL+N R                  + +A       R  P V DG     
Sbjct: 1   MNRIVIRSFVRGLVNSRSFGSVAGVAGGGSGGGMKVTFAAVASPGTRYQPMV-DG----- 54

Query: 43  LGLRMMVMMSSYSSSSESV--------------PEKVKEKGENGIVPSSYWGISRPKITR 88
            G +   ++SS ++ +E                 EK +++ EN +V SSYWGI RPKITR
Sbjct: 55  -GFQWRRLLSSSTAVAEEQGKVKLEQGIKDIENQEKKEKETENALV-SSYWGIYRPKITR 112

Query: 89  EDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGC 148
           EDGS WPWNCFMPWETYRADLSIDL KHH P TFLDKVAYR VKLLRIPTD+FFQRRYGC
Sbjct: 113 EDGSEWPWNCFMPWETYRADLSIDLGKHHEPKTFLDKVAYRVVKLLRIPTDIFFQRRYGC 172

Query: 149 RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKW 208
           RA+MLETVAAVPGMVGGMLLHLKSLRKFQHSG WIKALLEEAENERMHLMTM+ELV+PKW
Sbjct: 173 RAVMLETVAAVPGMVGGMLLHLKSLRKFQHSGVWIKALLEEAENERMHLMTMIELVQPKW 232

Query: 209 YERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPA 268
           YER+LV+TVQGVFFNAFFVLYL+SPKLAHR+VGYLEEEAIHSYTEYLKDID G IENVPA
Sbjct: 233 YERLLVITVQGVFFNAFFVLYLMSPKLAHRIVGYLEEEAIHSYTEYLKDIDEGKIENVPA 292

Query: 269 PAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           PAIAIDYWRLPKDA LKDVITVIRADEAHHRDVNHFASDI FQGKELR++ APLGYH
Sbjct: 293 PAIAIDYWRLPKDARLKDVITVIRADEAHHRDVNHFASDIHFQGKELRESAAPLGYH 349


>gi|449438777|ref|XP_004137164.1| PREDICTED: ubiquinol oxidase, mitochondrial-like [Cucumis sativus]
 gi|449532455|ref|XP_004173196.1| PREDICTED: ubiquinol oxidase, mitochondrial-like [Cucumis sativus]
          Length = 346

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 236/267 (88%), Positives = 250/267 (93%), Gaps = 2/267 (0%)

Query: 59  ESVPEKVKEKGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHV 118
           E+  EK KEK +N +V SSYWGI RPKITREDGS WPWNCFMPWETYRADLSIDL KHH 
Sbjct: 82  ENNQEKEKEK-DNALV-SSYWGIYRPKITREDGSEWPWNCFMPWETYRADLSIDLGKHHQ 139

Query: 119 PTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQH 178
           P TFLDKVAYR VKLLRIPTD+FFQRRYGCRA+MLETVAAVPGMVGGMLLHLKSLRKFQH
Sbjct: 140 PKTFLDKVAYRVVKLLRIPTDIFFQRRYGCRAVMLETVAAVPGMVGGMLLHLKSLRKFQH 199

Query: 179 SGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHR 238
           SGGWIKALLEEAENERMHLMTM+ELV+PKWYER+LV+TVQGVFFNAFFVLYL+SPKLAHR
Sbjct: 200 SGGWIKALLEEAENERMHLMTMIELVQPKWYERLLVITVQGVFFNAFFVLYLMSPKLAHR 259

Query: 239 VVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHH 298
           +VGYLEEEAIHSYTEYLKDI+ G IENVPAPAIAIDYWRLPKDA LKDVITVIRADEAHH
Sbjct: 260 IVGYLEEEAIHSYTEYLKDINEGKIENVPAPAIAIDYWRLPKDARLKDVITVIRADEAHH 319

Query: 299 RDVNHFASDIQFQGKELRDAPAPLGYH 325
           RDVNHFASDI FQGKELR++ APLGYH
Sbjct: 320 RDVNHFASDIHFQGKELRESAAPLGYH 346


>gi|89474873|gb|AAP33163.2| mitochondrial alternative oxidase 2 [Cucumis sativus]
          Length = 346

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 236/267 (88%), Positives = 250/267 (93%), Gaps = 2/267 (0%)

Query: 59  ESVPEKVKEKGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHV 118
           E+  EK KEK +N +V SSYWGI RPKITREDGS WPWNCFMPWETYRADLSIDL KHH 
Sbjct: 82  ENNQEKEKEK-DNALV-SSYWGIYRPKITREDGSEWPWNCFMPWETYRADLSIDLGKHHQ 139

Query: 119 PTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQH 178
           P TFLDKVAYR VKLLRIPTD+FFQRRYGCRA+MLETVAAVPGMVGGMLLHLKSLRKFQH
Sbjct: 140 PKTFLDKVAYRVVKLLRIPTDIFFQRRYGCRAVMLETVAAVPGMVGGMLLHLKSLRKFQH 199

Query: 179 SGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHR 238
           SGGWIKALLEEAENERMHLMTM+ELV+PKWYER+LV+TVQGVFFNAFFVLYL+SPKLAHR
Sbjct: 200 SGGWIKALLEEAENERMHLMTMIELVQPKWYERLLVITVQGVFFNAFFVLYLMSPKLAHR 259

Query: 239 VVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHH 298
           +VGYLEEEAIHSYTEYLKDI+ G IENVPAPAIAIDYWRLPKDA LKDVITVIRADEAHH
Sbjct: 260 IVGYLEEEAIHSYTEYLKDINEGKIENVPAPAIAIDYWRLPKDARLKDVITVIRADEAHH 319

Query: 299 RDVNHFASDIQFQGKELRDAPAPLGYH 325
           RDVNHFASDI FQGKELR++ APLGYH
Sbjct: 320 RDVNHFASDIHFQGKELRESAAPLGYH 346


>gi|225571963|gb|ABZ81230.2| mitochondrial alternative oxidase 2b [Daucus carota]
          Length = 319

 Score =  496 bits (1276), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 243/331 (73%), Positives = 274/331 (82%), Gaps = 18/331 (5%)

Query: 1   MNQLVAMSVMRGLINGRKHSIGYART------VVRCHPNVWDGDDMPLLGLRMMVMMSSY 54
           MNQ+VA SV+R LIN +K  +   R+        R  P +  G    +LG RMM      
Sbjct: 1   MNQVVARSVIRRLINSQKSPMSTFRSHDDIAIANRQRPGIIGGG-ARVLGTRMM------ 53

Query: 55  SSSSESVPEKVKEKGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLK 114
           S++ E+   K     EN +  +SYWG++RPK+ REDGS WPWNCFMPWETY+AD+SIDL 
Sbjct: 54  SAAGENEAAK-----ENKVSVTSYWGVARPKVKREDGSDWPWNCFMPWETYQADVSIDLN 108

Query: 115 KHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLR 174
           KHH P  FLDK+AY+TVKLLR+PTD+ F+RRYGCRAMMLETVAAVPGMVGGMLLHLKSLR
Sbjct: 109 KHHKPKGFLDKMAYKTVKLLRLPTDILFKRRYGCRAMMLETVAAVPGMVGGMLLHLKSLR 168

Query: 175 KFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPK 234
           KFQHSGGWIKALLEEAENERMHLMTMVELV+PKW+ER+LVL VQGVFFNAFFVLY+LSPK
Sbjct: 169 KFQHSGGWIKALLEEAENERMHLMTMVELVQPKWHERLLVLAVQGVFFNAFFVLYILSPK 228

Query: 235 LAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRAD 294
           LAHR+VGYLEEEAIHSYTEYLKDID G IENVPAPAI+IDYWRLP+DA L+DVI VIRAD
Sbjct: 229 LAHRIVGYLEEEAIHSYTEYLKDIDRGLIENVPAPAISIDYWRLPQDAKLRDVILVIRAD 288

Query: 295 EAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           EAHHRDVNHFASDI F+GKELRDAPAPLGYH
Sbjct: 289 EAHHRDVNHFASDIHFEGKELRDAPAPLGYH 319


>gi|351724097|ref|NP_001235766.1| ubiquinol oxidase 2, mitochondrial [Glycine max]
 gi|3913067|sp|Q41266.2|AOX2_SOYBN RecName: Full=Ubiquinol oxidase 2, mitochondrial; AltName:
           Full=Alternative oxidase 2; Flags: Precursor
 gi|1946336|gb|AAB97285.1| alternative oxidase 2a [Glycine max]
          Length = 333

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 224/253 (88%), Positives = 242/253 (95%)

Query: 73  IVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVK 132
           +V SSYWGISRPK+ REDG+ WPWNCFMPWE+YR+++SIDL KHHVP   LDKVAYRTVK
Sbjct: 81  VVESSYWGISRPKVVREDGTEWPWNCFMPWESYRSNVSIDLTKHHVPKNVLDKVAYRTVK 140

Query: 133 LLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAEN 192
           LLRIPTDLFF+RRYGCRAMMLETVAAVPGMVGGMLLHL+SLRKFQ SGGWIKALLEEAEN
Sbjct: 141 LLRIPTDLFFKRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKFQQSGGWIKALLEEAEN 200

Query: 193 ERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYT 252
           ERMHLMTMVELVKPKWYER+LVL VQGVFFNAFFVLY+LSPK+AHR+VGYLEEEAIHSYT
Sbjct: 201 ERMHLMTMVELVKPKWYERLLVLAVQGVFFNAFFVLYILSPKVAHRIVGYLEEEAIHSYT 260

Query: 253 EYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQG 312
           EYLKD++SG+IENVPAPAIAIDYWRLPKDA LKDVITVIRADEAHHRDVNHFASDI FQG
Sbjct: 261 EYLKDLESGAIENVPAPAIAIDYWRLPKDARLKDVITVIRADEAHHRDVNHFASDIHFQG 320

Query: 313 KELRDAPAPLGYH 325
           KELR+APAP+GYH
Sbjct: 321 KELREAPAPIGYH 333


>gi|32130599|gb|AAP68984.1| alternative oxidase 2a [Glycine max]
          Length = 333

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 224/253 (88%), Positives = 242/253 (95%)

Query: 73  IVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVK 132
           +V SSYWGISRPK+ REDG+ WPWNCFMPWE+YR+++SIDL KHHVP   LDKVAYRTVK
Sbjct: 81  VVESSYWGISRPKVVREDGTEWPWNCFMPWESYRSNVSIDLTKHHVPKNVLDKVAYRTVK 140

Query: 133 LLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAEN 192
           LLRIPTDLFF+RRYGCRAMMLETVAAVPGMVGGMLLHL+SLRKFQ SGGWIKALLEEAEN
Sbjct: 141 LLRIPTDLFFKRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKFQQSGGWIKALLEEAEN 200

Query: 193 ERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYT 252
           ERMHLMTMVELVKPKWYER+LVL VQGVFFNAFFVLY+LSPK+AHR+VGYLEEEAIHSYT
Sbjct: 201 ERMHLMTMVELVKPKWYERLLVLAVQGVFFNAFFVLYILSPKVAHRIVGYLEEEAIHSYT 260

Query: 253 EYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQG 312
           EYLKD++SG+IENVPAPAIAIDYWRLPKDA LKDVITVIRADEAHHRDVNHFASDI FQG
Sbjct: 261 EYLKDLESGAIENVPAPAIAIDYWRLPKDARLKDVITVIRADEAHHRDVNHFASDIHFQG 320

Query: 313 KELRDAPAPLGYH 325
           KELR+APAP+GYH
Sbjct: 321 KELREAPAPIGYH 333


>gi|255556647|ref|XP_002519357.1| Alternative oxidase, mitochondrial precursor, putative [Ricinus
           communis]
 gi|223541424|gb|EEF42974.1| Alternative oxidase, mitochondrial precursor, putative [Ricinus
           communis]
          Length = 352

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 226/291 (77%), Positives = 250/291 (85%), Gaps = 11/291 (3%)

Query: 46  RMMVMMSSYSSSSESVPEKVKEKGE-----------NGIVPSSYWGISRPKITREDGSPW 94
           R M+  S  +  SE    K +E  E           +  V SSYWGI RPK+ REDGS W
Sbjct: 62  RRMMSTSQLTEQSEKAVAKKEEASEVKGVESVKVNDSKAVVSSYWGIVRPKVLREDGSEW 121

Query: 95  PWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLE 154
           PWNCFMPWETY+++ +IDL KHHVP TFLDKVAYRTVKLLR+PTD+FF+RRYGCRAMMLE
Sbjct: 122 PWNCFMPWETYQSNTAIDLSKHHVPKTFLDKVAYRTVKLLRVPTDIFFRRRYGCRAMMLE 181

Query: 155 TVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLV 214
           TVAAVPGMVGGMLLHL+SLRKFQ SGGWIKALLEEAENERMHLMTMVELV+P+WYER+LV
Sbjct: 182 TVAAVPGMVGGMLLHLRSLRKFQQSGGWIKALLEEAENERMHLMTMVELVQPRWYERLLV 241

Query: 215 LTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAID 274
           L VQGVFFNA+FVLYLLSPKLAHR+ GYLEEEAIHSYTE+LKDI  G IEN+PAPAI+ID
Sbjct: 242 LAVQGVFFNAYFVLYLLSPKLAHRITGYLEEEAIHSYTEFLKDIKEGKIENIPAPAISID 301

Query: 275 YWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           YWRLPKDATL+DVITVIRADEAHHRDVNHFASDI +QGKELR+APAPLGYH
Sbjct: 302 YWRLPKDATLEDVITVIRADEAHHRDVNHFASDIHYQGKELREAPAPLGYH 352


>gi|296086812|emb|CBI32961.3| unnamed protein product [Vitis vinifera]
          Length = 327

 Score =  479 bits (1234), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 230/273 (84%), Positives = 251/273 (91%), Gaps = 7/273 (2%)

Query: 60  SVPEK-VKEKG-----ENGIVP-SSYWGISRPKITREDGSPWPWNCFMPWETYRADLSID 112
           + P+K +KEK      +NG V  SSY GISRPKI R+DG+ WPWN F+PWETY AD +ID
Sbjct: 55  AFPQKEIKEKSVSKTEKNGEVDVSSYCGISRPKIVRKDGTEWPWNSFVPWETYHADTAID 114

Query: 113 LKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKS 172
           L KHHVP TF+DKVAYRTVKLLRIPTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLHL+S
Sbjct: 115 LSKHHVPKTFVDKVAYRTVKLLRIPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRS 174

Query: 173 LRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLS 232
           LRKF+HSGGW+KALLEEAENERMHLMTMVELV+PKWYER+LVLTVQGVFFNAFFVLY+LS
Sbjct: 175 LRKFEHSGGWVKALLEEAENERMHLMTMVELVRPKWYERLLVLTVQGVFFNAFFVLYVLS 234

Query: 233 PKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIR 292
           PK AHRVVGYLEEEAIHSYTE+LKDIDSG+IENVPAPAIAIDYWRLPKDATLKDVITVIR
Sbjct: 235 PKAAHRVVGYLEEEAIHSYTEFLKDIDSGAIENVPAPAIAIDYWRLPKDATLKDVITVIR 294

Query: 293 ADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           ADEAHHRDVNHFASDI FQGK+L +APAP+GYH
Sbjct: 295 ADEAHHRDVNHFASDIHFQGKKLNEAPAPIGYH 327


>gi|9759397|dbj|BAB09852.1| alternative oxidase 2 [Arabidopsis thaliana]
          Length = 282

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 222/280 (79%), Positives = 249/280 (88%), Gaps = 5/280 (1%)

Query: 51  MSSYSSSSESVPEKVKEKGENG---IVPSSYWGI--SRPKITREDGSPWPWNCFMPWETY 105
           MSS S+  +       +KG+NG   +   SYWGI  ++ KITR+DGS WPWNCFMPWETY
Sbjct: 3   MSSASAMEKKDENLTVKKGQNGGGSVAVPSYWGIETAKMKITRKDGSDWPWNCFMPWETY 62

Query: 106 RADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGG 165
           +A+LSIDLKKHHVP    DKVAYR VKLLRIPTD+FFQRRYGCRAMMLETVAAVPGMVGG
Sbjct: 63  QANLSIDLKKHHVPKNIADKVAYRIVKLLRIPTDIFFQRRYGCRAMMLETVAAVPGMVGG 122

Query: 166 MLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAF 225
           MLLHLKS+RKF+HSGGWIKALLEEAENERMHLMTM+ELVKPKWYER+LV+ VQG+FFN+F
Sbjct: 123 MLLHLKSIRKFEHSGGWIKALLEEAENERMHLMTMMELVKPKWYERLLVMLVQGIFFNSF 182

Query: 226 FVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLK 285
           FV Y++SP+LAHRVVGYLEEEAIHSYTE+LKDID+G IENV APAIAIDYWRLPKDATLK
Sbjct: 183 FVCYVISPRLAHRVVGYLEEEAIHSYTEFLKDIDNGKIENVAAPAIAIDYWRLPKDATLK 242

Query: 286 DVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           DV+TVIRADEAHHRDVNHFASDI+ QGKELR+A AP+GYH
Sbjct: 243 DVVTVIRADEAHHRDVNHFASDIRNQGKELREAAAPIGYH 282


>gi|30697967|ref|NP_201226.2| alternative oxidase 2 [Arabidopsis thaliana]
 gi|21264382|sp|O22049.2|AOX2_ARATH RecName: Full=Ubiquinol oxidase 2, mitochondrial; AltName:
           Full=Alternative oxidase 2; Flags: Precursor
 gi|15216224|dbj|BAA22636.2| alternative oxidase [Arabidopsis thaliana]
 gi|67633916|gb|AAY78882.1| mitochondrial alternative oxidase 2 [Arabidopsis thaliana]
 gi|332010472|gb|AED97855.1| alternative oxidase 2 [Arabidopsis thaliana]
          Length = 353

 Score =  469 bits (1206), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 222/280 (79%), Positives = 249/280 (88%), Gaps = 5/280 (1%)

Query: 51  MSSYSSSSESVPEKVKEKGENG---IVPSSYWGI--SRPKITREDGSPWPWNCFMPWETY 105
           MSS S+  +       +KG+NG   +   SYWGI  ++ KITR+DGS WPWNCFMPWETY
Sbjct: 74  MSSASAMEKKDENLTVKKGQNGGGSVAVPSYWGIETAKMKITRKDGSDWPWNCFMPWETY 133

Query: 106 RADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGG 165
           +A+LSIDLKKHHVP    DKVAYR VKLLRIPTD+FFQRRYGCRAMMLETVAAVPGMVGG
Sbjct: 134 QANLSIDLKKHHVPKNIADKVAYRIVKLLRIPTDIFFQRRYGCRAMMLETVAAVPGMVGG 193

Query: 166 MLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAF 225
           MLLHLKS+RKF+HSGGWIKALLEEAENERMHLMTM+ELVKPKWYER+LV+ VQG+FFN+F
Sbjct: 194 MLLHLKSIRKFEHSGGWIKALLEEAENERMHLMTMMELVKPKWYERLLVMLVQGIFFNSF 253

Query: 226 FVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLK 285
           FV Y++SP+LAHRVVGYLEEEAIHSYTE+LKDID+G IENV APAIAIDYWRLPKDATLK
Sbjct: 254 FVCYVISPRLAHRVVGYLEEEAIHSYTEFLKDIDNGKIENVAAPAIAIDYWRLPKDATLK 313

Query: 286 DVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           DV+TVIRADEAHHRDVNHFASDI+ QGKELR+A AP+GYH
Sbjct: 314 DVVTVIRADEAHHRDVNHFASDIRNQGKELREAAAPIGYH 353


>gi|17154769|emb|CAD12835.1| putative alternative oxidase [Vigna unguiculata]
 gi|70799005|gb|AAZ09195.1| mitochondrial alternative oxidase 2b [Vigna unguiculata]
          Length = 326

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 218/327 (66%), Positives = 254/327 (77%), Gaps = 3/327 (0%)

Query: 1   MNQLVAMSVMRGLINGRKHSIGYARTVVRCHPNVWDGDDM--PLLGLRMMVMMSSYSSSS 58
           M   +  S  R L+ G +    +A T     P    G          RM  +      +S
Sbjct: 1   MKHTLVRSAARALLGGGRSYYRHAPTAAIVEPTRQHGGGAFGSFYLRRMSTLPDIKDHNS 60

Query: 59  ESVPEKVKEKGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHV 118
           E    +VK+   N ++ SSYWGISRPK+ REDG+ WPWNCFMPW+TY +D+SID+ KHH 
Sbjct: 61  EEKKNEVKDDNTNAVI-SSYWGISRPKVRREDGTEWPWNCFMPWDTYHSDVSIDVTKHHT 119

Query: 119 PTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQH 178
           P +  DKVA+R+VK LR+ +DL+F+ RYGC AMMLET+AAVPGMVGGMLLHLKSLRKFQH
Sbjct: 120 PKSLTDKVAFRSVKFLRVLSDLYFKERYGCHAMMLETIAAVPGMVGGMLLHLKSLRKFQH 179

Query: 179 SGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHR 238
           SGGWIKALLEEAENERMHLMTMVELV+PKW+ER+L+ T QGVFFNAFFV YLLSPK AHR
Sbjct: 180 SGGWIKALLEEAENERMHLMTMVELVQPKWHERLLIFTAQGVFFNAFFVFYLLSPKAAHR 239

Query: 239 VVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHH 298
            VGYLEEEA+ SYT++L+ I+SG +ENVPAPAIAIDYWRLPKDATLKDV+TVIRADEAHH
Sbjct: 240 FVGYLEEEAVISYTQHLEAIESGKVENVPAPAIAIDYWRLPKDATLKDVVTVIRADEAHH 299

Query: 299 RDVNHFASDIQFQGKELRDAPAPLGYH 325
           RDVNHFASDI  QGKELRDAPAP+GYH
Sbjct: 300 RDVNHFASDIHHQGKELRDAPAPIGYH 326


>gi|297830954|ref|XP_002883359.1| hypothetical protein ARALYDRAFT_479749 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297329199|gb|EFH59618.1| hypothetical protein ARALYDRAFT_479749 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 354

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 207/258 (80%), Positives = 234/258 (90%), Gaps = 2/258 (0%)

Query: 68  KGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVA 127
           KGE GI  +SYWG+   KIT+EDGS W WNCF PWETY ADL+IDLKKHHVPTTFLD++A
Sbjct: 99  KGEKGI--ASYWGVEPNKITKEDGSEWKWNCFRPWETYNADLTIDLKKHHVPTTFLDRLA 156

Query: 128 YRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALL 187
           Y TVK LR PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLH KSLR+F+ SGGWIKALL
Sbjct: 157 YWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALL 216

Query: 188 EEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEA 247
           EEAENERMHLMT +E+ KPKWYER LV+TVQGVFFNA+F+ YL+SPK AHR+VGYLEEEA
Sbjct: 217 EEAENERMHLMTFMEVAKPKWYERALVITVQGVFFNAYFLGYLISPKFAHRMVGYLEEEA 276

Query: 248 IHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASD 307
           IHSYTE+LK++D G+IENVPAPAIAIDYWRLP DATL+DV+ V+RADEAHHRDVNHFASD
Sbjct: 277 IHSYTEFLKELDKGNIENVPAPAIAIDYWRLPADATLRDVVIVVRADEAHHRDVNHFASD 336

Query: 308 IQFQGKELRDAPAPLGYH 325
           I +QG+EL++APAP+GYH
Sbjct: 337 IHYQGRELKEAPAPIGYH 354


>gi|15228734|ref|NP_188876.1| alternative oxidase 1A [Arabidopsis thaliana]
 gi|3915639|sp|Q39219.2|AOX1A_ARATH RecName: Full=Ubiquinol oxidase 1a, mitochondrial; AltName:
           Full=Alternative oxidase 1a; Flags: Precursor
 gi|13877807|gb|AAK43981.1|AF370166_1 putative alternative oxidase 1a precursor [Arabidopsis thaliana]
 gi|2506083|dbj|BAA22625.1| alternative oxidase [Arabidopsis thaliana]
 gi|9293872|dbj|BAB01775.1| alternative oxidase 1a precursor [Arabidopsis thaliana]
 gi|16323480|gb|AAL15234.1| putative alternative oxidase 1a precursor [Arabidopsis thaliana]
 gi|332643106|gb|AEE76627.1| alternative oxidase 1A [Arabidopsis thaliana]
          Length = 354

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 205/258 (79%), Positives = 235/258 (91%), Gaps = 2/258 (0%)

Query: 68  KGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVA 127
           KG+ GI  +SYWG+   KIT+EDGS W WNCF PWETY+AD++IDLKKHHVPTTFLD++A
Sbjct: 99  KGDKGI--ASYWGVEPNKITKEDGSEWKWNCFRPWETYKADITIDLKKHHVPTTFLDRIA 156

Query: 128 YRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALL 187
           Y TVK LR PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLH KSLR+F+ SGGWIKALL
Sbjct: 157 YWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALL 216

Query: 188 EEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEA 247
           EEAENERMHLMT +E+ KPKWYER LV+TVQGVFFNA+F+ YL+SPK AHR+VGYLEEEA
Sbjct: 217 EEAENERMHLMTFMEVAKPKWYERALVITVQGVFFNAYFLGYLISPKFAHRMVGYLEEEA 276

Query: 248 IHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASD 307
           IHSYTE+LK++D G+IENVPAPAIAIDYWRLP DATL+DV+ V+RADEAHHRDVNHFASD
Sbjct: 277 IHSYTEFLKELDKGNIENVPAPAIAIDYWRLPADATLRDVVMVVRADEAHHRDVNHFASD 336

Query: 308 IQFQGKELRDAPAPLGYH 325
           I +QG+EL++APAP+GYH
Sbjct: 337 IHYQGRELKEAPAPIGYH 354


>gi|4006943|emb|CAA10364.1| alternative oxidase [Arabidopsis thaliana]
          Length = 353

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 205/258 (79%), Positives = 235/258 (91%), Gaps = 2/258 (0%)

Query: 68  KGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVA 127
           KG+ GI  +SYWG+   KIT+EDGS W WNCF PWETY+AD++IDLKKHHVPTTFLD++A
Sbjct: 98  KGDKGI--ASYWGVEPNKITKEDGSEWKWNCFRPWETYKADITIDLKKHHVPTTFLDRIA 155

Query: 128 YRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALL 187
           Y TVK LR PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLH KSLR+F+ SGGWIKALL
Sbjct: 156 YWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALL 215

Query: 188 EEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEA 247
           EEAENERMHLMT +E+ KPKWYER LV+TVQGVFFNA+F+ YL+SPK AHR+VGYLEEEA
Sbjct: 216 EEAENERMHLMTFMEVAKPKWYERALVITVQGVFFNAYFLGYLISPKFAHRMVGYLEEEA 275

Query: 248 IHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASD 307
           IHSYTE+LK++D G+IENVPAPAIAIDYWRLP DATL+DV+ V+RADEAHHRDVNHFASD
Sbjct: 276 IHSYTEFLKELDKGNIENVPAPAIAIDYWRLPADATLRDVVMVVRADEAHHRDVNHFASD 335

Query: 308 IQFQGKELRDAPAPLGYH 325
           I +QG+EL++APAP+GYH
Sbjct: 336 IHYQGRELKEAPAPIGYH 353


>gi|166876|gb|AAA32870.1| oxidase [Arabidopsis thaliana]
          Length = 305

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 205/258 (79%), Positives = 235/258 (91%), Gaps = 2/258 (0%)

Query: 68  KGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVA 127
           KG+ GI  +SYWG+   KIT+EDGS W WNCF PWETY+AD++IDLKKHHVPTTFLD++A
Sbjct: 50  KGDKGI--ASYWGVEPNKITKEDGSEWKWNCFRPWETYKADITIDLKKHHVPTTFLDRIA 107

Query: 128 YRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALL 187
           Y TVK LR PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLH KSLR+F+ SGGWIKALL
Sbjct: 108 YWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALL 167

Query: 188 EEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEA 247
           EEAENERMHLMT +E+ KPKWYER LV+TVQGVFFNA+F+ YL+SPK AHR+VGYLEEEA
Sbjct: 168 EEAENERMHLMTFMEVAKPKWYERALVITVQGVFFNAYFLGYLISPKFAHRMVGYLEEEA 227

Query: 248 IHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASD 307
           IHSYTE+LK++D G+IENVPAPAIAIDYWRLP DATL+DV+ V+RADEAHHRDVNHFASD
Sbjct: 228 IHSYTEFLKELDKGNIENVPAPAIAIDYWRLPADATLRDVVMVVRADEAHHRDVNHFASD 287

Query: 308 IQFQGKELRDAPAPLGYH 325
           I +QG+EL++APAP+GYH
Sbjct: 288 IHYQGRELKEAPAPIGYH 305


>gi|225571959|gb|ABZ81227.2| mitochondrial alternative oxidase 1a [Daucus carota]
          Length = 326

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 203/260 (78%), Positives = 233/260 (89%)

Query: 66  KEKGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDK 125
           +E G N  V +SYWGI   ++ +EDG+PW WNCF PWETY+ADL+IDLKKHHVPTTFLDK
Sbjct: 67  REDGGNKEVVASYWGIKGEEVKKEDGTPWKWNCFRPWETYQADLTIDLKKHHVPTTFLDK 126

Query: 126 VAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKA 185
           +AY TVK LR PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH KSLR+F+HSGGWIK 
Sbjct: 127 LAYWTVKSLRFPTDVFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKT 186

Query: 186 LLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEE 245
           LL+EAENERMHLMT +E+ +P+WYER LV TVQGVFFNA+F+ YL SPKLAHRVVGYLEE
Sbjct: 187 LLDEAENERMHLMTFMEVSQPRWYERALVFTVQGVFFNAYFLAYLASPKLAHRVVGYLEE 246

Query: 246 EAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFA 305
           EAIHSYTE+LK++D G+IENVPAPAIAIDYWRLP D+TL+DV+ V+RADEAHHRDVNHFA
Sbjct: 247 EAIHSYTEFLKELDKGTIENVPAPAIAIDYWRLPADSTLRDVVMVVRADEAHHRDVNHFA 306

Query: 306 SDIQFQGKELRDAPAPLGYH 325
           SDI +QG EL+D+PAPLGYH
Sbjct: 307 SDIHYQGHELKDSPAPLGYH 326


>gi|1872517|gb|AAB49302.1| alternative oxidase, partial [Arabidopsis thaliana]
          Length = 287

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 205/258 (79%), Positives = 235/258 (91%), Gaps = 2/258 (0%)

Query: 68  KGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVA 127
           KG+ GI  +SYWG+   KIT+EDGS W WNCF PWETY+AD++IDLKKHHVPTTFLD++A
Sbjct: 32  KGDKGI--ASYWGVEPNKITKEDGSEWKWNCFRPWETYKADITIDLKKHHVPTTFLDRIA 89

Query: 128 YRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALL 187
           Y TVK LR PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLH KSLR+F+ SGGWIKALL
Sbjct: 90  YWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALL 149

Query: 188 EEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEA 247
           EEAENERMHLMT +E+ KPKWYER LV+TVQGVFFNA+F+ YL+SPK AHR+VGYLEEEA
Sbjct: 150 EEAENERMHLMTFMEVAKPKWYERALVITVQGVFFNAYFLGYLISPKFAHRMVGYLEEEA 209

Query: 248 IHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASD 307
           IHSYTE+LK++D G+IENVPAPAIAIDYWRLP DATL+DV+ V+RADEAHHRDVNHFASD
Sbjct: 210 IHSYTEFLKELDKGNIENVPAPAIAIDYWRLPADATLRDVVMVVRADEAHHRDVNHFASD 269

Query: 308 IQFQGKELRDAPAPLGYH 325
           I +QG+EL++APAP+GYH
Sbjct: 270 IHYQGRELKEAPAPIGYH 287


>gi|357490753|ref|XP_003615664.1| Alternative oxidase [Medicago truncatula]
 gi|355516999|gb|AES98622.1| Alternative oxidase [Medicago truncatula]
          Length = 275

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 205/275 (74%), Positives = 237/275 (86%)

Query: 51  MSSYSSSSESVPEKVKEKGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLS 110
           MS+     +   E+ K   ++  V SSYWGI+RPK+ REDG+ WPWNCFMPWE+Y +D+S
Sbjct: 1   MSTLPEKKDQHSEENKNSNDSNTVVSSYWGITRPKVKREDGTEWPWNCFMPWESYSSDVS 60

Query: 111 IDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHL 170
           ID+ KHHVP TF DK A+R+VK LR+ +DL+F+ RYGC AMMLET+AAVP MVGGMLLHL
Sbjct: 61  IDVTKHHVPKTFGDKFAFRSVKFLRVLSDLYFKERYGCHAMMLETIAAVPPMVGGMLLHL 120

Query: 171 KSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYL 230
           KSLRKFQH+GGWIKALLEEAENERMHLMTMVELVKP W+ER+LV+T QGVFFNAFFV Y+
Sbjct: 121 KSLRKFQHTGGWIKALLEEAENERMHLMTMVELVKPSWHERLLVITAQGVFFNAFFVFYI 180

Query: 231 LSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITV 290
           LSPK AHR VGYLEEEA+ SYT++L  I+SG +ENVPAPAIAIDYWRLPKDATLKDVITV
Sbjct: 181 LSPKTAHRFVGYLEEEAVISYTQHLNAIESGKVENVPAPAIAIDYWRLPKDATLKDVITV 240

Query: 291 IRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           IRADEAHHRDVNHFASDI  QGKEL++APAP+GYH
Sbjct: 241 IRADEAHHRDVNHFASDIHHQGKELKEAPAPIGYH 275


>gi|312282139|dbj|BAJ33935.1| unnamed protein product [Thellungiella halophila]
          Length = 357

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 209/284 (73%), Positives = 243/284 (85%), Gaps = 3/284 (1%)

Query: 43  LGLRMMVMMSSYSSSSESVP-EKVKEKGENGIVPSSYWGISRPKITREDGSPWPWNCFMP 101
           LG +     +   + +ESV  +    KGE GI   SYWG+   KIT+EDG+ W WNCF P
Sbjct: 76  LGEKQETEANPKKTENESVGGDAGGNKGEKGI--DSYWGVEPNKITKEDGTEWKWNCFRP 133

Query: 102 WETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPG 161
           WETY+ADL+IDL KHHVPTTFLD++AY TVK LR PTD+FFQRRYGCRAMMLETVAAVPG
Sbjct: 134 WETYKADLTIDLSKHHVPTTFLDRLAYWTVKSLRWPTDIFFQRRYGCRAMMLETVAAVPG 193

Query: 162 MVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVF 221
           MVGGMLLH KSLR+F+ SGGWIKALLEEAENERMHLMT +E+ KPKWYER LV+TVQGVF
Sbjct: 194 MVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVITVQGVF 253

Query: 222 FNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKD 281
           FNA+F+ YL+SPK AHR+VGYLEEEAIHSYTE+LK++D G+IENVPAPAIAIDYWRLP D
Sbjct: 254 FNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAIDYWRLPAD 313

Query: 282 ATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           ATL+DV+ V+RADEAHHRDVNHFASDI +QG+EL++APAP+GYH
Sbjct: 314 ATLRDVVMVVRADEAHHRDVNHFASDIHYQGRELKEAPAPIGYH 357


>gi|327554104|gb|AEB00555.1| mitochondrial alternative oxidase 1a [Brassica juncea]
          Length = 360

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 207/303 (68%), Positives = 249/303 (82%), Gaps = 11/303 (3%)

Query: 34  VWDGDDMPLLGLRM--MVMMSSYSSSSESVPEKVKEKGENGIVP---------SSYWGIS 82
           +W      + G+R    V +   ++++++ P+K + +   G            +SYWG+ 
Sbjct: 58  IWTTRAPAMGGVRFASTVTLGEKTTTTDANPKKAENESSTGGDAGGNKGGKGIASYWGVE 117

Query: 83  RPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFF 142
             KIT+EDG+ W WNCF PWETY+ADL+IDL KHHVPTTFLD++AY TVK LR PTDLFF
Sbjct: 118 PSKITKEDGTEWKWNCFRPWETYKADLTIDLSKHHVPTTFLDRLAYWTVKSLRWPTDLFF 177

Query: 143 QRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVE 202
           QRRYGCRAMMLETVAAVPGMVGGMLLH KSLR+F+ SGGWIKALLEEAENERMHLMT +E
Sbjct: 178 QRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLMTFME 237

Query: 203 LVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGS 262
           + KPKWYER LV+TVQGVFFNA+F+ YL+SPK AHR+VGYLEEEAIHSYTE+LK++D G+
Sbjct: 238 VAKPKWYERALVITVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGN 297

Query: 263 IENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPL 322
           IENVPAPAIAIDYWRLP DATL+DV+ V+RADEAHHRDVNHFASDI +QG+EL++APAP+
Sbjct: 298 IENVPAPAIAIDYWRLPADATLRDVVMVVRADEAHHRDVNHFASDIHYQGRELKEAPAPI 357

Query: 323 GYH 325
           GYH
Sbjct: 358 GYH 360


>gi|117646985|dbj|BAF36564.1| alternative oxidase [Nicotiana tabacum]
          Length = 353

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 208/295 (70%), Positives = 243/295 (82%), Gaps = 14/295 (4%)

Query: 45  LRMMVMMSSYSSSSESVPEKVKEK-GENGIVPS-------------SYWGISRPKITRED 90
           +R   +M S S+SS ++ +K  +K  ENG   +             SYWG+   K+T+ED
Sbjct: 59  VRHFPVMGSRSASSMALNDKQHDKKAENGSAAATGGGDGGDEKSVVSYWGVQPSKVTKED 118

Query: 91  GSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRA 150
           G+ W WNCF PWETY+ADLSIDL KHH PTTFLDK AY TVK LR PTD+FFQRRYGCRA
Sbjct: 119 GTEWKWNCFRPWETYKADLSIDLTKHHAPTTFLDKFAYWTVKSLRYPTDIFFQRRYGCRA 178

Query: 151 MMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYE 210
           MMLETVAAVPGMVGGMLLH KSLR+F+ SGGWIK LL+EAENERMHLMT +E+ KP WYE
Sbjct: 179 MMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKTLLDEAENERMHLMTFMEVAKPNWYE 238

Query: 211 RMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPA 270
           R LV  VQGVFFNA+FV YLLSPKLAHR+VGYLEEEAIHSYTE+LK++D G+IENVPAPA
Sbjct: 239 RALVFAVQGVFFNAYFVTYLLSPKLAHRIVGYLEEEAIHSYTEFLKELDKGNIENVPAPA 298

Query: 271 IAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           IAIDYWRLPKD+TL+DV+ V+RADEAHHRDVNHFASDI +QG++L+D+PAP+GYH
Sbjct: 299 IAIDYWRLPKDSTLRDVVLVVRADEAHHRDVNHFASDIHYQGQQLKDSPAPIGYH 353


>gi|155573899|gb|ABU24346.1| mitochondrial alternative oxidase AOX1a [Nicotiana glutinosa]
 gi|155573901|gb|ABU24347.1| mitochondrial alternative oxidase AOX1a [Nicotiana glutinosa]
          Length = 353

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 209/295 (70%), Positives = 242/295 (82%), Gaps = 14/295 (4%)

Query: 45  LRMMVMMSSYSSSSESVPEKVKEK------------GENGIVPS--SYWGISRPKITRED 90
            R   +M S S+S+ ++  K  +K            G+ G   S  SYWG+   K+T+ED
Sbjct: 59  FRHFAVMGSRSASTMALNGKQHDKKVETGAAAASVGGDGGDEKSVVSYWGVPPSKVTKED 118

Query: 91  GSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRA 150
           G+ W WNCF PWETY+ADLSIDL KHH PTTFLDK AY TVK LR PTD+FFQRRYGCRA
Sbjct: 119 GTEWKWNCFRPWETYKADLSIDLTKHHAPTTFLDKFAYWTVKALRYPTDIFFQRRYGCRA 178

Query: 151 MMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYE 210
           MMLETVAAVPGMVGGMLLH KSLR+F+ SGGWIKALLEEAENERMHLMT +E+ KP WYE
Sbjct: 179 MMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAKPNWYE 238

Query: 211 RMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPA 270
           R LV  VQGVFFNA+FV YLLSPKLAHR+VGYLEEEAIHSYTE+LK++D G+IENVPAPA
Sbjct: 239 RALVFAVQGVFFNAYFVTYLLSPKLAHRIVGYLEEEAIHSYTEFLKELDKGNIENVPAPA 298

Query: 271 IAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           IAIDYWRLPKD+TL+DV+ V+RADEAHHRDVNHFASDI +QG++L+D+PAP+GYH
Sbjct: 299 IAIDYWRLPKDSTLRDVVLVVRADEAHHRDVNHFASDIHYQGQQLKDSPAPIGYH 353


>gi|351728013|ref|NP_001238460.1| alternative oxidase 3, mitochondrial [Glycine max]
 gi|3023305|sp|O03376.1|AOX3_SOYBN RecName: Full=Alternative oxidase 3, mitochondrial; Flags:
           Precursor
 gi|1946338|gb|AAB97286.1| alternative oxidase 2b [Glycine max]
          Length = 326

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 213/329 (64%), Positives = 252/329 (76%), Gaps = 7/329 (2%)

Query: 1   MNQLVAMSVMRGLINGRKHS----IGYARTVVRCHPNVWDGDDMPLLGLRMMVMMSSYSS 56
           M  ++  S  R L+ G   S    +  A  V + H +   G       LR M  +     
Sbjct: 1   MKNVLVRSAARALLGGGGRSYYRQLSTAAIVEQRHQH--GGGAFGSFHLRRMSTLPEVKD 58

Query: 57  SSESVPEKVKEKGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKH 116
              S  +K +  G +  V +SYWGI+RPK+ REDG+ WPWNCFMPW++Y +D+SID+ KH
Sbjct: 59  Q-HSEEKKNEVNGTSNAVVTSYWGITRPKVRREDGTEWPWNCFMPWDSYHSDVSIDVTKH 117

Query: 117 HVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKF 176
           H P +  DKVA+R VK LR+ +D++F+ RYGC AMMLET+AAVPGMVGGMLLHLKSLRKF
Sbjct: 118 HTPKSLTDKVAFRAVKFLRVLSDIYFKERYGCHAMMLETIAAVPGMVGGMLLHLKSLRKF 177

Query: 177 QHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLA 236
           QHSGGWIKALLEEAENERMHLMTMVELVKP W+ER+L+ T QGVFFNAFFV YLLSPK A
Sbjct: 178 QHSGGWIKALLEEAENERMHLMTMVELVKPSWHERLLIFTAQGVFFNAFFVFYLLSPKAA 237

Query: 237 HRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEA 296
           HR VGYLEEEA+ SYT++L  I+SG +ENVPAPAIAIDYWRLPKDATLKDV+TVIRADEA
Sbjct: 238 HRFVGYLEEEAVISYTQHLNAIESGKVENVPAPAIAIDYWRLPKDATLKDVVTVIRADEA 297

Query: 297 HHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           HHRDVNHFASDI  QGKEL++APAP+GYH
Sbjct: 298 HHRDVNHFASDIHHQGKELKEAPAPIGYH 326


>gi|32130598|gb|AAP68983.1| alternative oxidase 2b [Glycine max]
          Length = 326

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 211/329 (64%), Positives = 249/329 (75%), Gaps = 7/329 (2%)

Query: 1   MNQLVAMSVMRGLINGRKHS----IGYARTVVRCHPNVWDGDDMPLLGLRMMVMMSSYSS 56
           M  ++  S  R L+ G   S    +  A  V + H +   G       LR M  +     
Sbjct: 1   MKNVLVRSAARALLGGGGRSYYRQLSTAAIVEQRHQH--GGGAFGSFHLRRMSTLPEVKD 58

Query: 57  SSESVPEKVKEKGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKH 116
                 +       N +V +SYWGI+RPK+ REDG+ WPWNCFMPW++Y +D+SID+ KH
Sbjct: 59  QHSEEKKNEVNDTSNAVV-TSYWGITRPKVRREDGTEWPWNCFMPWDSYHSDVSIDVTKH 117

Query: 117 HVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKF 176
           H P +  DKVA+R VK LR+ +D++F+ RYGC AMMLET+AAVPGMVGGMLLHLKSLRKF
Sbjct: 118 HTPKSLTDKVAFRAVKFLRVLSDIYFKERYGCHAMMLETIAAVPGMVGGMLLHLKSLRKF 177

Query: 177 QHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLA 236
           QHSGGWIKALLEEAENERMHLMTMVELVKP W+ER+L+ T QGVFFNAFFV YLLSPK A
Sbjct: 178 QHSGGWIKALLEEAENERMHLMTMVELVKPSWHERLLIFTAQGVFFNAFFVFYLLSPKAA 237

Query: 237 HRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEA 296
           HR VGYLEEEA+ SYT++L  I+SG +ENVPAPAIAIDYWRLPKDATLKDV+TVIRADEA
Sbjct: 238 HRFVGYLEEEAVISYTQHLNAIESGKVENVPAPAIAIDYWRLPKDATLKDVVTVIRADEA 297

Query: 297 HHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           HHRDVNHFASDI  QGKEL++APAP+GYH
Sbjct: 298 HHRDVNHFASDIHHQGKELKEAPAPIGYH 326


>gi|70799007|gb|AAZ09196.1| mitochondrial alternative oxidase 1 [Vigna unguiculata]
 gi|70799009|gb|AAZ09197.1| mitochondrial alternative oxidase 1 [Vigna unguiculata]
          Length = 316

 Score =  442 bits (1137), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 210/291 (72%), Positives = 241/291 (82%), Gaps = 11/291 (3%)

Query: 44  GLRMMVMMSSYSSSSESVPEKVK---------EKGENGIVPSSYWGISRPKITREDGSPW 94
           G R        S S+  +PEK K          K + GIV  SYWG+   KIT+ DG+ W
Sbjct: 28  GARAFYGGGVRSESTLVLPEKEKMEKKVGDGGNKEQKGIV--SYWGVEPSKITKLDGTEW 85

Query: 95  PWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLE 154
            WNCF PWETY+AD+SIDL KHH PTTFLDK+A  TVK LR PTDLFFQRRYGCRAMMLE
Sbjct: 86  KWNCFRPWETYKADVSIDLNKHHAPTTFLDKMALWTVKTLRYPTDLFFQRRYGCRAMMLE 145

Query: 155 TVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLV 214
           TVAAVPGMV GMLLHLKSLR+F+HSGGWIKALLEEAENERMHLMT +E+ KPKWYER LV
Sbjct: 146 TVAAVPGMVAGMLLHLKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALV 205

Query: 215 LTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAID 274
           +TVQGVFFNA+F+ Y++SPK AHR+VGYLEEEAIHSYTE+LK++D G+IENVPAPAIAID
Sbjct: 206 ITVQGVFFNAYFLGYMISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAID 265

Query: 275 YWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           YW+LP D+TLKDV+TV+RADEAHHRDVNHFASDI +QG+ELR+A AP+GYH
Sbjct: 266 YWQLPPDSTLKDVVTVVRADEAHHRDVNHFASDIHYQGRELREAAAPIGYH 316


>gi|40036979|gb|AAR37364.1| mitochondrial alternative oxidase [Nicotiana attenuata]
          Length = 349

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 197/249 (79%), Positives = 225/249 (90%)

Query: 77  SYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRI 136
           SYWG+   K+T+EDG+ W WNCF PWETY+ADL+IDL KHH PTTFLDK AY TVK LR 
Sbjct: 101 SYWGVPPSKVTKEDGTEWKWNCFRPWETYKADLTIDLTKHHAPTTFLDKFAYWTVKALRY 160

Query: 137 PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMH 196
           PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH KSLR+F+ SGGWIKALLEEAENERMH
Sbjct: 161 PTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMH 220

Query: 197 LMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLK 256
           LMT +E+ KP WYER LV  VQGVFFNA+FV YL+SPKLAHR+VGYLEEEAIHSYTE+LK
Sbjct: 221 LMTFMEVAKPNWYERALVFAVQGVFFNAYFVTYLVSPKLAHRIVGYLEEEAIHSYTEFLK 280

Query: 257 DIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELR 316
           ++D G+IENVPAPAIAIDYWRLPKD+TL+DV+ V+RADEAHHRDVNHFASDI +QG++L+
Sbjct: 281 ELDKGNIENVPAPAIAIDYWRLPKDSTLRDVVLVVRADEAHHRDVNHFASDIHYQGQQLK 340

Query: 317 DAPAPLGYH 325
           D+PAP+GYH
Sbjct: 341 DSPAPIGYH 349


>gi|3023316|sp|Q41224.1|AOX1_TOBAC RecName: Full=Ubiquinol oxidase 1, mitochondrial; AltName:
           Full=Alternative oxidase 1; Flags: Precursor
 gi|558054|gb|AAC60576.1| alternative oxidase [Nicotiana tabacum]
 gi|1090812|prf||2019465A Aox1 gene
          Length = 353

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 206/295 (69%), Positives = 240/295 (81%), Gaps = 14/295 (4%)

Query: 45  LRMMVMMSSYSSSSESVPEKVKEK-GENGIVPS-------------SYWGISRPKITRED 90
           +R   +M S S+ S ++ +K  +K  ENG   +             SYWG+   K+T+ED
Sbjct: 59  VRHFPVMGSRSAMSMALNDKQHDKKAENGSAAATGGGDGGDEKSVVSYWGVQPSKVTKED 118

Query: 91  GSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRA 150
           G+ W WNCF PWETY+ADLSIDL KHH PTTFLDK AY TVK LR PTD+FFQRRYGCRA
Sbjct: 119 GTEWKWNCFRPWETYKADLSIDLTKHHAPTTFLDKFAYWTVKSLRYPTDIFFQRRYGCRA 178

Query: 151 MMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYE 210
           MMLETVAAVPGMVGGMLLH KSLR+F+ SGGWIK LL+EAENERMHLMT +E+ KP WYE
Sbjct: 179 MMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKTLLDEAENERMHLMTFMEVAKPNWYE 238

Query: 211 RMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPA 270
           R LV  VQGVFFNA+FV YLLSPKLAHR+VGYLEEEAIHSYTE+LK++D G+IENVPAPA
Sbjct: 239 RALVFAVQGVFFNAYFVTYLLSPKLAHRIVGYLEEEAIHSYTEFLKELDKGNIENVPAPA 298

Query: 271 IAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           IAIDY RLPKD+TL DV+ V+RADEAHHRDVNHFASDI +QG++L+D+PAP+GYH
Sbjct: 299 IAIDYCRLPKDSTLLDVVLVVRADEAHHRDVNHFASDIHYQGQQLKDSPAPIGYH 353


>gi|6634501|emb|CAB64356.1| alternative oxidase [Populus tremula x Populus tremuloides]
          Length = 351

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 198/269 (73%), Positives = 235/269 (87%), Gaps = 2/269 (0%)

Query: 57  SSESVPEKVKEKGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKH 116
            ++SV E   ++ +  I  +SYWG+   ++T+EDG+ W WNCF PWETY ADLSIDLKKH
Sbjct: 85  QTQSVAEGGDKEEKKEI--ASYWGVPPSRVTKEDGAEWKWNCFRPWETYSADLSIDLKKH 142

Query: 117 HVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKF 176
           HVP TFLDK+AY  VK LR PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLH KSLR+F
Sbjct: 143 HVPATFLDKMAYWMVKALRFPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRF 202

Query: 177 QHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLA 236
           +HSGGWIK LL+EAENERMHLMT +E+ KP+WYER LV+TVQGVF NA+F+ Y++SPK A
Sbjct: 203 EHSGGWIKTLLDEAENERMHLMTFMEVAKPRWYERALVITVQGVFLNAYFLGYIISPKFA 262

Query: 237 HRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEA 296
           HR+VGYLEEEAIHSYTE+LK++D G+IENVPAPAIA+DYWRLP DATL+DV+ V+RADEA
Sbjct: 263 HRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAVDYWRLPPDATLRDVVLVVRADEA 322

Query: 297 HHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           HHRDVNHFASDI +QG+EL++APAP+GYH
Sbjct: 323 HHRDVNHFASDIHYQGRELKEAPAPIGYH 351


>gi|400530644|gb|AFP86473.1| mitochondrial alternative oxidase [Brassica rapa subsp. chinensis]
          Length = 427

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 204/300 (68%), Positives = 246/300 (82%), Gaps = 11/300 (3%)

Query: 34  VWDGDDMPLLGLRM--MVMMSSYSSSSESVPEKVKEKGENGIVP---------SSYWGIS 82
           +W      + G+R    V +   ++++++ P+K + +   G            +SYWG+ 
Sbjct: 58  IWTTRAPAMGGVRFASTVTLGEKTTTTDANPKKAENESSTGGDAGGNKGGKGIASYWGVE 117

Query: 83  RPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFF 142
             KIT+EDG+ W WNCF PWETY+ADL+IDL KHHVPTTFLD++AY TVK LR PTDLFF
Sbjct: 118 PSKITKEDGTEWKWNCFRPWETYKADLTIDLSKHHVPTTFLDRLAYWTVKSLRWPTDLFF 177

Query: 143 QRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVE 202
           QRRYGCRAMMLETVAAVPGMVGGMLLH KSLR+F+ SGGWIKALLEEAENERMHLMT +E
Sbjct: 178 QRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLMTFME 237

Query: 203 LVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGS 262
           + KPKWYER LV+TVQGVFFNA+F+ YL+SPK AHR+VGYLEEEAIHSYTE+LK++D G+
Sbjct: 238 VAKPKWYERALVITVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGN 297

Query: 263 IENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPL 322
           IENVPAPAIAIDYWRLP DATL+DV+ V+RADEAHHRDVNHFASDI +QG+EL++APAP+
Sbjct: 298 IENVPAPAIAIDYWRLPADATLRDVVMVVRADEAHHRDVNHFASDIHYQGRELKEAPAPI 357


>gi|190710541|gb|ACE95101.1| mitochondrial alternative oxidase precursor [Citrus sinensis]
          Length = 336

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 206/296 (69%), Positives = 237/296 (80%), Gaps = 13/296 (4%)

Query: 41  PLLGLRMMVMMSSYSSSSESVPEKVK-----------EKGENGIVPSSYWGISRPKITRE 89
           P+LG R    ++      +   E V+            K E  IV  SYWG+  PK+ ++
Sbjct: 43  PILGSRNRSTLALGGEKEQQREENVQTTGAAAAGGSGNKDEKRIV--SYWGVEAPKVNKD 100

Query: 90  DGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCR 149
           DGS W WNCF PWE Y ADLSIDLKKHH PTTF DK+A  TVK LR PTDLFFQRRYGCR
Sbjct: 101 DGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCR 160

Query: 150 AMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWY 209
           AMMLETVAAVPGMVGGMLLH KSLR+F+HSGGWIKALLEEAENERMHLMT +E+ KPKWY
Sbjct: 161 AMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWY 220

Query: 210 ERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAP 269
           ER LV  VQGVFFNA+F+ YL+SPK AHR+VGYLEEEAIHSYTE+LK++D G+IENVPAP
Sbjct: 221 ERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAP 280

Query: 270 AIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           AIA DYWRLP ++TLKDV+ V+RADEAHHRDVNHFASDI +QG++LR++PAPLGYH
Sbjct: 281 AIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHFASDIHYQGRQLRESPAPLGYH 336


>gi|3913066|sp|Q40578.2|AOX2_TOBAC RecName: Full=Ubiquinol oxidase 2, mitochondrial; AltName:
           Full=Alternative oxidase 2; Flags: Precursor
          Length = 297

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 197/249 (79%), Positives = 223/249 (89%)

Query: 77  SYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRI 136
           SYWG+   K+T+EDG+ W WNCF PWETY+ADLSIDL KHH PTTFLDK AY TVK LR 
Sbjct: 49  SYWGVPPSKVTKEDGTEWKWNCFRPWETYKADLSIDLTKHHAPTTFLDKFAYWTVKALRY 108

Query: 137 PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMH 196
           PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH KSLR+F+ SGGWIKALLEEAENERMH
Sbjct: 109 PTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMH 168

Query: 197 LMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLK 256
           LMT +E+ KP WYER LV  VQGVF NA+FV YLLSPKLAHR+VGYLEEEAIHSYTE+LK
Sbjct: 169 LMTFMEVAKPNWYERALVFAVQGVFINAYFVTYLLSPKLAHRIVGYLEEEAIHSYTEFLK 228

Query: 257 DIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELR 316
           ++D G+IENVPAPAIAIDYWRLPKD+TL+DV+ V+RADEAHHRDVNHFA DI +QG++L+
Sbjct: 229 ELDKGNIENVPAPAIAIDYWRLPKDSTLRDVVLVVRADEAHHRDVNHFAPDIHYQGQQLK 288

Query: 317 DAPAPLGYH 325
           D+PAP+GYH
Sbjct: 289 DSPAPIGYH 297


>gi|269784500|dbj|BAI49704.1| alternative oxidase [Lysichiton camtschatcensis]
          Length = 352

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 200/266 (75%), Positives = 231/266 (86%), Gaps = 2/266 (0%)

Query: 60  SVPEKVKEKGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVP 119
           + P+      E  +V  SYWG+   K T+EDGS W W+CF PWETY AD+SIDLKKHH P
Sbjct: 89  AAPKAGARAEEKAVV--SYWGVPPSKATKEDGSEWRWSCFRPWETYEADMSIDLKKHHAP 146

Query: 120 TTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHS 179
           TTFLDK+A+ TVK LR PTD+FFQRRYGCRAMMLETVAAVPGMVGG+LLHLKSLR+F+HS
Sbjct: 147 TTFLDKLAFWTVKSLRYPTDVFFQRRYGCRAMMLETVAAVPGMVGGLLLHLKSLRRFEHS 206

Query: 180 GGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRV 239
           GGWIK LLEEAENERMHLMT +E+ +P+WYER LVL VQGVFFNA+F+ YLLSPK AHRV
Sbjct: 207 GGWIKTLLEEAENERMHLMTFMEVSQPRWYERALVLAVQGVFFNAYFLGYLLSPKFAHRV 266

Query: 240 VGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHR 299
           VGYLEEEAIHSYTE+LK+ID+G+IENVPAPAIA+DYWRLP+ +TL+DV+ V+RADEAHHR
Sbjct: 267 VGYLEEEAIHSYTEFLKEIDNGTIENVPAPAIALDYWRLPQGSTLRDVVMVVRADEAHHR 326

Query: 300 DVNHFASDIQFQGKELRDAPAPLGYH 325
           DVNHFASDI +QG EL+ APAPLGYH
Sbjct: 327 DVNHFASDIHYQGHELKKAPAPLGYH 352


>gi|162462512|ref|NP_001105180.1| alternative oxidase1 [Zea mays]
 gi|25989199|gb|AAL27796.1| alternative oxidase AOX2 precursor [Zea mays]
 gi|39984776|gb|AAR36136.1| alternative oxidase 1a [Zea mays]
 gi|194707372|gb|ACF87770.1| unknown [Zea mays]
 gi|414585627|tpg|DAA36198.1| TPA: alternative oxidase [Zea mays]
          Length = 329

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 206/304 (67%), Positives = 246/304 (80%), Gaps = 16/304 (5%)

Query: 32  PNVWDGDDMPLLGLRMMVMMSSYSSSSESVPEKVKEKG---------ENGIVPSSYWGIS 82
           P +  G+ +P + LR+M      S+SS + P + K++          +  +V +SYWGI 
Sbjct: 32  PLLAGGNGVPAVMLRLM------STSSPAAPTEAKDEAAKASKVGGDKKAVVINSYWGIE 85

Query: 83  RP-KITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLF 141
           +  K+ R+DG+ W W CF PWETY AD SIDL +HH P T +DKVAY TVK LR PTD+F
Sbjct: 86  QNNKLARDDGTEWKWTCFRPWETYTADTSIDLTRHHEPKTLMDKVAYWTVKSLRFPTDIF 145

Query: 142 FQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMV 201
           FQRRYGCRAMMLETVAAVPGMVGGMLLHL+SLR+F+ SGGWI+ALLEEAENERMHLMT +
Sbjct: 146 FQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEQSGGWIRALLEEAENERMHLMTFM 205

Query: 202 ELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSG 261
           E+ KP+WYER LV+TVQGVFFNA+F+ YLLSPK AHRVVGYLEEEAIHSYTEYLKD+++G
Sbjct: 206 EVAKPRWYERALVITVQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAIHSYTEYLKDLEAG 265

Query: 262 SIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAP 321
            IENVPAPAIAIDYWRLP +ATLKDV+TV+RADEAHHRDVNHFASDI  QG +L+ +PAP
Sbjct: 266 KIENVPAPAIAIDYWRLPANATLKDVVTVVRADEAHHRDVNHFASDIHCQGMQLKQSPAP 325

Query: 322 LGYH 325
           +GYH
Sbjct: 326 IGYH 329


>gi|357484585|ref|XP_003612580.1| Alternative oxidase [Medicago truncatula]
 gi|355513915|gb|AES95538.1| Alternative oxidase [Medicago truncatula]
          Length = 330

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 199/258 (77%), Positives = 231/258 (89%), Gaps = 2/258 (0%)

Query: 68  KGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVA 127
           K E GI  +SYWG+   KIT+ DG+ W WNCF PWETY+AD++IDL KHH PTTFLDK+A
Sbjct: 75  KDEKGI--TSYWGVQPSKITKPDGTEWKWNCFRPWETYKADVTIDLTKHHKPTTFLDKMA 132

Query: 128 YRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALL 187
           Y TVK LR PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH KSLR+F+ SGGWIKALL
Sbjct: 133 YWTVKSLRWPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALL 192

Query: 188 EEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEA 247
           EEAENERMHLMT +E+ KPKWYER LV+TVQGVFFNA+F+ YLLSPK AHR+VGYLEEEA
Sbjct: 193 EEAENERMHLMTFMEVAKPKWYERALVITVQGVFFNAYFLGYLLSPKFAHRMVGYLEEEA 252

Query: 248 IHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASD 307
           IHSYTE+LK++D G+IENVPAPAIAIDYW+LP+++TL+DV+ V+RADEAHHRDVNHFASD
Sbjct: 253 IHSYTEFLKELDKGNIENVPAPAIAIDYWQLPQNSTLRDVVEVVRADEAHHRDVNHFASD 312

Query: 308 IQFQGKELRDAPAPLGYH 325
           I +QG+ELR+A AP+GYH
Sbjct: 313 IHYQGRELREAAAPIGYH 330


>gi|242077034|ref|XP_002448453.1| hypothetical protein SORBIDRAFT_06g027410 [Sorghum bicolor]
 gi|241939636|gb|EES12781.1| hypothetical protein SORBIDRAFT_06g027410 [Sorghum bicolor]
          Length = 331

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 204/286 (71%), Positives = 240/286 (83%), Gaps = 6/286 (2%)

Query: 45  LRMMVMMSSYSSSSESVPEKVKEKGENG----IVPSSYWGISRP-KITREDGSPWPWNCF 99
           LR+M   SS +++SE+  E  K   E G    +V +SYWGI +  K+ R+DG+ W W CF
Sbjct: 47  LRLMST-SSPAAASEAKDEAAKASKEGGDKKAVVINSYWGIEQNNKLVRDDGTEWKWTCF 105

Query: 100 MPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAV 159
            PWETY AD SIDL +HH P T +DK+AY TVK LR PTD+FFQRRYGCRAMMLETVAAV
Sbjct: 106 RPWETYTADTSIDLTRHHEPKTLMDKIAYWTVKSLRFPTDIFFQRRYGCRAMMLETVAAV 165

Query: 160 PGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQG 219
           PGMVGGMLLHL+SLR+F+ SGGWI+ALLEEAENERMHLMT +E+ KP+WYER LV+TVQG
Sbjct: 166 PGMVGGMLLHLRSLRRFEQSGGWIRALLEEAENERMHLMTFMEVAKPRWYERALVITVQG 225

Query: 220 VFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLP 279
           VFFNA+F+ YLLSPK AHRVVGYLEEEAIHSYTEYLKD+++G IENVPAP+IAIDYWRLP
Sbjct: 226 VFFNAYFLGYLLSPKFAHRVVGYLEEEAIHSYTEYLKDLEAGKIENVPAPSIAIDYWRLP 285

Query: 280 KDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
            +ATLKDV+TV+RADEAHHRDVNHFASDI  QG +L+ +PAP+GYH
Sbjct: 286 ANATLKDVVTVVRADEAHHRDVNHFASDIHCQGMQLKQSPAPIGYH 331


>gi|115460316|ref|NP_001053758.1| Os04g0600200 [Oryza sativa Japonica Group]
 gi|3218544|dbj|BAA28772.1| alternative oxidase [Oryza sativa Japonica Group]
 gi|3218546|dbj|BAA28773.1| alternative oxidase [Oryza sativa Japonica Group]
 gi|6467126|dbj|BAA86963.1| alternative oxidase [Oryza sativa (japonica cultivar-group)]
 gi|38345773|emb|CAD41813.2| OSJNBa0083N12.11 [Oryza sativa Japonica Group]
 gi|113565329|dbj|BAF15672.1| Os04g0600200 [Oryza sativa Japonica Group]
 gi|116310914|emb|CAH67852.1| B0403H10-OSIGBa0105A11.4 [Oryza sativa Indica Group]
 gi|125549592|gb|EAY95414.1| hypothetical protein OsI_17254 [Oryza sativa Indica Group]
 gi|125591517|gb|EAZ31867.1| hypothetical protein OsJ_16032 [Oryza sativa Japonica Group]
 gi|215693779|dbj|BAG88978.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 332

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 208/296 (70%), Positives = 244/296 (82%), Gaps = 2/296 (0%)

Query: 32  PNVWDGDDMP-LLGLRMMVMMSSYSSSSESVPEKVKEKGENGIVPSSYWGISRPK-ITRE 89
           P +  G+ +P + GLR+M   S  S+ + +  E  K   E  +V +SYWGI + K + RE
Sbjct: 37  PFLAGGEAVPGVWGLRLMSTSSVASTEAAAKAEAKKADAEKEVVVNSYWGIEQSKKLVRE 96

Query: 90  DGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCR 149
           DG+ W W+CF PWETY AD SIDL KHHVP T LDK+AY TVK LR PTD+FFQRRYGCR
Sbjct: 97  DGTEWKWSCFRPWETYTADTSIDLTKHHVPKTLLDKIAYWTVKSLRFPTDIFFQRRYGCR 156

Query: 150 AMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWY 209
           AMMLETVAAVPGMVGGMLLHL+SLR+F+ SGGWI+ LLEEAENERMHLMT +E+  PKWY
Sbjct: 157 AMMLETVAAVPGMVGGMLLHLRSLRRFEQSGGWIRTLLEEAENERMHLMTFMEVANPKWY 216

Query: 210 ERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAP 269
           ER LV+TVQGVFFNA+F+ YLLSPK AHRVVGYLEEEAIHSYTE+LKD+++G I+NVPAP
Sbjct: 217 ERALVITVQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAIHSYTEFLKDLEAGKIDNVPAP 276

Query: 270 AIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           AIAIDYWRLP +ATLKDV+TV+RADEAHHRDVNHFASDI +QG EL+  PAP+GYH
Sbjct: 277 AIAIDYWRLPANATLKDVVTVVRADEAHHRDVNHFASDIHYQGMELKQTPAPIGYH 332


>gi|350539075|ref|NP_001234117.1| alternative oxidase 1a [Solanum lycopersicum]
 gi|29465622|gb|AAK58482.1| alternative oxidase 1a [Solanum lycopersicum]
          Length = 358

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 203/299 (67%), Positives = 238/299 (79%), Gaps = 18/299 (6%)

Query: 45  LRMMVMMSSYSSSSESVPEKVKEK------------------GENGIVPSSYWGISRPKI 86
           +R    M S S+S+ ++ +K +EK                  G  G    SYWG+   K 
Sbjct: 60  VRHFSAMGSRSASTAALNDKQQEKESSDKKVENTATATAAVNGGVGKSVVSYWGVPPSKA 119

Query: 87  TREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRY 146
           T+ DG+ W WNCF PWETY AD+SIDL KHH P TFLDK AY TVK+LR PTD+FFQRRY
Sbjct: 120 TKPDGTEWKWNCFRPWETYEADMSIDLTKHHAPVTFLDKFAYWTVKILRFPTDVFFQRRY 179

Query: 147 GCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKP 206
           GCRAMMLETVAAVPGMVGGMLLH KSLR+F+ SGGWIKALLEEAENERMHLMT +E+ KP
Sbjct: 180 GCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAKP 239

Query: 207 KWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENV 266
             YER LV  VQGVFFNA+F  YL+SPKLAHR+VGYLEEEA+HSYTE+LK++D+G+IENV
Sbjct: 240 NVYERALVFAVQGVFFNAYFAAYLISPKLAHRIVGYLEEEAVHSYTEFLKELDNGNIENV 299

Query: 267 PAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           PAPAIAIDYWRLPKDATL+DV+ V+RADEAHHRDVNH+ASDI +QG++L+D+PAPLGYH
Sbjct: 300 PAPAIAIDYWRLPKDATLRDVVLVVRADEAHHRDVNHYASDIHYQGQQLKDSPAPLGYH 358


>gi|404160475|gb|AFR53081.1| AOX [Anthurium andraeanum]
          Length = 345

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 200/249 (80%), Positives = 225/249 (90%)

Query: 77  SYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRI 136
           SYWG+   K+T++DGS W W  F PWETY+ADLSIDLKKHH PTT LDKVA+ TVK LR 
Sbjct: 97  SYWGVPPSKVTKDDGSAWRWASFRPWETYQADLSIDLKKHHAPTTILDKVAFWTVKSLRW 156

Query: 137 PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMH 196
           PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLR+F+HSGGWIK LLEEAENERMH
Sbjct: 157 PTDVFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRRFEHSGGWIKGLLEEAENERMH 216

Query: 197 LMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLK 256
           LMT +E+V+P+WYER LV+TVQGVFFNA+F+ YLLSPK AHRVVGYLEEEAIHSYTE+LK
Sbjct: 217 LMTFMEVVQPRWYERALVMTVQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAIHSYTEFLK 276

Query: 257 DIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELR 316
           +ID G+IENVPAPAIA+DYWRLP  +TL+DV+ VIRADEAHHRDVNHFASDI +QG+ELR
Sbjct: 277 EIDKGTIENVPAPAIALDYWRLPPGSTLRDVVMVIRADEAHHRDVNHFASDIHYQGRELR 336

Query: 317 DAPAPLGYH 325
            APAPLGYH
Sbjct: 337 TAPAPLGYH 345


>gi|40036985|gb|AAR37365.1| mitochondrial alternative oxidase [Nicotiana attenuata]
          Length = 353

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 197/249 (79%), Positives = 225/249 (90%)

Query: 77  SYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRI 136
           SYWG+   K+T+EDG+ W WNCF PWETY+ADL+IDL KHH PTTFLDK AY TVK LR 
Sbjct: 105 SYWGVPPSKVTKEDGTEWKWNCFRPWETYKADLTIDLTKHHAPTTFLDKFAYWTVKALRY 164

Query: 137 PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMH 196
           PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH KSLR+F+ SGGWIKALLEEAENERMH
Sbjct: 165 PTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMH 224

Query: 197 LMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLK 256
           LMT +E+ KP WYER LV  VQGVFFNA+FV YL+SPKLAHR+VGYLEEEAIHSYTE+LK
Sbjct: 225 LMTFMEVAKPNWYERALVFAVQGVFFNAYFVTYLVSPKLAHRIVGYLEEEAIHSYTEFLK 284

Query: 257 DIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELR 316
           ++D G+IENVPAPAIAIDYWRLPKD+TL+DV+ V+RADEAHHRDVNHFASDI +QG++L+
Sbjct: 285 ELDKGNIENVPAPAIAIDYWRLPKDSTLRDVVVVVRADEAHHRDVNHFASDIHYQGQQLK 344

Query: 317 DAPAPLGYH 325
           D+PAP+GYH
Sbjct: 345 DSPAPIGYH 353


>gi|224118194|ref|XP_002317754.1| predicted protein [Populus trichocarpa]
 gi|222858427|gb|EEE95974.1| predicted protein [Populus trichocarpa]
          Length = 336

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 199/263 (75%), Positives = 233/263 (88%), Gaps = 4/263 (1%)

Query: 63  EKVKEKGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTF 122
           +K +EK  N IV  SYWG+   ++T+EDG+ W WNCF PWETY ADLSI+L KHH P TF
Sbjct: 78  DKAEEK--NAIV--SYWGVPPSRVTKEDGTEWKWNCFRPWETYSADLSINLTKHHAPVTF 133

Query: 123 LDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGW 182
           LDK+AY TVK LR PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLH KSLR+F+HSGGW
Sbjct: 134 LDKMAYWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGW 193

Query: 183 IKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGY 242
           IKALLEEAENERMHLMT +E+  P+WYER LV+TVQGVFFNA+F+ YL+SPK AHR+VGY
Sbjct: 194 IKALLEEAENERMHLMTFMEVANPRWYERALVITVQGVFFNAYFLGYLISPKFAHRMVGY 253

Query: 243 LEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVN 302
           LEEEAIHSYTE+LK++D G+I+NVPAPAIAIDYWRLP ++TL+DV+ V+RADEAHHRDVN
Sbjct: 254 LEEEAIHSYTEFLKELDKGNIKNVPAPAIAIDYWRLPPNSTLRDVVEVVRADEAHHRDVN 313

Query: 303 HFASDIQFQGKELRDAPAPLGYH 325
           HFASDI +QG+EL++APAP+GYH
Sbjct: 314 HFASDIHYQGRELKEAPAPIGYH 336


>gi|195637742|gb|ACG38339.1| transposon protein [Zea mays]
          Length = 329

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 205/304 (67%), Positives = 246/304 (80%), Gaps = 16/304 (5%)

Query: 32  PNVWDGDDMPLLGLRMMVMMSSYSSSSESVPEKVKEKG---------ENGIVPSSYWGIS 82
           P +  G+ +P + LR+M      S+SS + P + K++          +  +V +SYWGI 
Sbjct: 32  PLLAGGNGVPAVMLRLM------STSSPAAPTEAKDEAAKASKVGGDKKAVVINSYWGIE 85

Query: 83  RP-KITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLF 141
           +  K+ R+DG+ W W CF PWETY AD SIDL +H+ P T +DKVAY TVK LR PTD+F
Sbjct: 86  QNNKLARDDGTEWKWTCFRPWETYTADTSIDLTRHYEPKTLMDKVAYWTVKSLRFPTDIF 145

Query: 142 FQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMV 201
           FQRRYGCRAMMLETVAAVPGMVGGMLLHL+SLR+F+ SGGWI+ALLEEAENERMHLMT +
Sbjct: 146 FQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEQSGGWIRALLEEAENERMHLMTFM 205

Query: 202 ELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSG 261
           E+ KP+WYER LV+TVQGVFFNA+F+ YLLSPK AHRVVGYLEEEAIHSYTEYLKD+++G
Sbjct: 206 EVAKPRWYERALVITVQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAIHSYTEYLKDLEAG 265

Query: 262 SIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAP 321
            IENVPAPAIAIDYWRLP +ATLKDV+TV+RADEAHHRDVNHFASDI  QG +L+ +PAP
Sbjct: 266 KIENVPAPAIAIDYWRLPANATLKDVVTVVRADEAHHRDVNHFASDIHCQGMQLKQSPAP 325

Query: 322 LGYH 325
           +GYH
Sbjct: 326 IGYH 329


>gi|52421172|dbj|BAD51467.1| alternative oxidase [Philodendron bipinnatifidum]
          Length = 345

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 199/271 (73%), Positives = 232/271 (85%), Gaps = 2/271 (0%)

Query: 55  SSSSESVPEKVKEKGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLK 114
           +++ ++   KV    +  +V  SYW ++  ++T E GS W W CF PWE Y ADLSIDLK
Sbjct: 77  AATKQTDAAKVAAAEQKAVV--SYWDVAPSRVTNEGGSEWRWACFRPWEAYEADLSIDLK 134

Query: 115 KHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLR 174
           KHH PTTFLDK+A+RTV+ LR PTD+FFQRRY CRAMMLETVAAVPGMVGGMLLHLKSLR
Sbjct: 135 KHHAPTTFLDKMAFRTVRALRWPTDIFFQRRYACRAMMLETVAAVPGMVGGMLLHLKSLR 194

Query: 175 KFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPK 234
           +F+HSGGWIKALLEEAENERMHLMT +E+ +P+WYER LVL VQGVFFNA+F+ YLLSPK
Sbjct: 195 RFEHSGGWIKALLEEAENERMHLMTFMEVSQPRWYERALVLAVQGVFFNAYFLGYLLSPK 254

Query: 235 LAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRAD 294
            AHRVVGYLEEEAIHSYTE+LKDID G+I+NVPAPAIA+DYWRLP+ +TL+DV+ VIRAD
Sbjct: 255 FAHRVVGYLEEEAIHSYTEFLKDIDRGAIKNVPAPAIALDYWRLPQGSTLRDVVMVIRAD 314

Query: 295 EAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           EAHHRDVNHFASDI +QG EL+ APAPLGYH
Sbjct: 315 EAHHRDVNHFASDIHYQGHELKAAPAPLGYH 345


>gi|633600|emb|CAA56163.1| alternative oxidase [Nicotiana tabacum]
          Length = 297

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 196/249 (78%), Positives = 222/249 (89%)

Query: 77  SYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRI 136
           SYWG+   K+T+EDG+ W WNCF PWETY+ADLSIDL KHH PTTFLDK AY TVK LR 
Sbjct: 49  SYWGVPPSKVTKEDGTEWKWNCFRPWETYKADLSIDLTKHHAPTTFLDKFAYWTVKALRY 108

Query: 137 PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMH 196
           PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH KSLR+F+ SGGWIKALLEEAENERMH
Sbjct: 109 PTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMH 168

Query: 197 LMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLK 256
           LMT +E+ KP WYER LV  VQGVF NA+FV YLLSPKLA R+VGYLEEEAIHSYTE+LK
Sbjct: 169 LMTFMEVAKPNWYERALVFAVQGVFINAYFVTYLLSPKLAXRIVGYLEEEAIHSYTEFLK 228

Query: 257 DIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELR 316
           ++D G+IENVPAPAIAIDYWRLPKD+TL+DV+ V+RADEAHHRDVNHFA DI +QG++L+
Sbjct: 229 ELDKGNIENVPAPAIAIDYWRLPKDSTLRDVVLVVRADEAHHRDVNHFAPDIHYQGQQLK 288

Query: 317 DAPAPLGYH 325
           D+PAP+GYH
Sbjct: 289 DSPAPIGYH 297


>gi|19912725|dbj|BAB88645.1| alternative oxidase [Triticum aestivum]
          Length = 328

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 201/287 (70%), Positives = 234/287 (81%), Gaps = 6/287 (2%)

Query: 45  LRMMVMMSSYSSSSESV----PEKVKEKGENGIVP-SSYWGISRPK-ITREDGSPWPWNC 98
           +RMM   ++     E+      E  K  GE   V  SSYWGI + K + REDG+ W W+C
Sbjct: 42  VRMMSTSAASQVKDEAAKGVKAEAAKGDGEKKEVAISSYWGIDQSKKLVREDGTEWKWSC 101

Query: 99  FMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAA 158
           F PWETY AD SIDL KHHVP T LDK+AY TVK LR PTD+FFQRRYGCRAMMLETVAA
Sbjct: 102 FRPWETYTADTSIDLTKHHVPNTMLDKIAYYTVKSLRFPTDIFFQRRYGCRAMMLETVAA 161

Query: 159 VPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQ 218
           VPGMVGGMLLHL+SLR+F+ SGGWI+ALLEEAENERMHLMT +E+ +P+WYER LV+ VQ
Sbjct: 162 VPGMVGGMLLHLRSLRRFEQSGGWIRALLEEAENERMHLMTFMEVAQPRWYERALVIAVQ 221

Query: 219 GVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRL 278
           GVFFNA+F  YL+SPK AHRVVGYLEEEA+HSYTE+LKD+D G I+NVPAPAIAIDYWRL
Sbjct: 222 GVFFNAYFFGYLISPKFAHRVVGYLEEEAVHSYTEFLKDLDDGKIDNVPAPAIAIDYWRL 281

Query: 279 PKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           P +ATLKDV+TV+RADEAHHRDVNHFASD+ +QG +L+  PAP+GYH
Sbjct: 282 PANATLKDVVTVVRADEAHHRDVNHFASDVYYQGMQLKATPAPIGYH 328


>gi|51860695|gb|AAU11467.1| mitochondrial alternative oxidase 1 [Saccharum officinarum]
          Length = 331

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 201/286 (70%), Positives = 235/286 (82%), Gaps = 5/286 (1%)

Query: 45  LRMMVMMSSYSSSSESVPEKVKEKGENG----IVPSSYWGISRP-KITREDGSPWPWNCF 99
           +R+M   S  + S  +  E  K   E G    +V +SYWGI +  K+ R+DG+ W W CF
Sbjct: 46  VRLMSTSSPAAVSEATKDEAAKASKEGGDKKAVVINSYWGIEQNNKLVRDDGTEWKWTCF 105

Query: 100 MPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAV 159
            PWETY AD SIDL +HH   T +DK+AY TVK LR PTD+FFQRRYGCRAMMLETVAAV
Sbjct: 106 RPWETYTADTSIDLTRHHELKTLMDKIAYWTVKSLRFPTDIFFQRRYGCRAMMLETVAAV 165

Query: 160 PGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQG 219
           PGMVGGMLLHL+SLR+F+ SGGWI+ALLEEAENERMHLMT +E+ KP+WYER LV+TVQG
Sbjct: 166 PGMVGGMLLHLRSLRRFEQSGGWIRALLEEAENERMHLMTFMEVAKPRWYERALVITVQG 225

Query: 220 VFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLP 279
           VFFNA+F+ YLLSPK AHRVVGYLEEEAIHSYTEYLKD+++G IENVPAPAIAIDYWRLP
Sbjct: 226 VFFNAYFLGYLLSPKFAHRVVGYLEEEAIHSYTEYLKDVEAGKIENVPAPAIAIDYWRLP 285

Query: 280 KDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
            +ATLKDV+TV+RADEAHHRDVNHFASDI  QG +L+ +PAP+GYH
Sbjct: 286 ANATLKDVVTVVRADEAHHRDVNHFASDIHCQGMQLKQSPAPIGYH 331


>gi|226897263|dbj|BAH56640.1| alternative oxidase 1b [Nelumbo nucifera]
          Length = 348

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 196/249 (78%), Positives = 221/249 (88%)

Query: 77  SYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRI 136
           SYWG+   K+T+EDG+ W WN F PWETY+ADLSIDLKKHH P  FLDK+AY TVK LR 
Sbjct: 100 SYWGLVPSKVTKEDGTVWRWNSFRPWETYQADLSIDLKKHHEPNKFLDKMAYWTVKTLRY 159

Query: 137 PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMH 196
           PTDLFFQRRYGCRAMMLETVAAVPGMV GMLLH KSLR+F+HSGGWIKALLEEAENERMH
Sbjct: 160 PTDLFFQRRYGCRAMMLETVAAVPGMVAGMLLHCKSLRRFEHSGGWIKALLEEAENERMH 219

Query: 197 LMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLK 256
           LMT +E+ +PKWYER LV TVQG+FFNA+F+ YL+SPKLAHR VGYLEEEAIHSYTE+LK
Sbjct: 220 LMTFMEVSQPKWYERALVFTVQGIFFNAYFLAYLISPKLAHRAVGYLEEEAIHSYTEFLK 279

Query: 257 DIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELR 316
           ++D G+IENVPAPAIAIDYW LP D+TL+DV+  +RADEAHHRDVNHFASDI FQG+ELR
Sbjct: 280 ELDKGNIENVPAPAIAIDYWHLPPDSTLRDVVLAVRADEAHHRDVNHFASDIHFQGQELR 339

Query: 317 DAPAPLGYH 325
           + PAPLGYH
Sbjct: 340 EIPAPLGYH 348


>gi|46452193|gb|AAS98193.1| alternative oxidase 1au [Solanum lycopersicum]
          Length = 358

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 202/299 (67%), Positives = 237/299 (79%), Gaps = 18/299 (6%)

Query: 45  LRMMVMMSSYSSSSESVPEKVKEK------------------GENGIVPSSYWGISRPKI 86
           +R    M S S+S+ ++ +K +EK                  G  G    SYWG+   K 
Sbjct: 60  VRHFSAMGSRSASTAALNDKQQEKESSDKKVENTATATAAVNGGVGKSVVSYWGVPPSKA 119

Query: 87  TREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRY 146
           T+ DG+ W WNCF PWETY AD+SIDL KHH P TFLDK AY TVK+LR PTD+FFQRRY
Sbjct: 120 TKPDGTEWKWNCFRPWETYEADMSIDLTKHHAPVTFLDKFAYWTVKILRFPTDVFFQRRY 179

Query: 147 GCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKP 206
           GCRAMMLETVAAVPGMVGGMLLH KSLR+F+ SGGWIKALLEEAENERMHLMT +E+ KP
Sbjct: 180 GCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAKP 239

Query: 207 KWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENV 266
             YER LV  VQGVFFNA+F  YL+SPKLAHR+VGYLEEEA+ SYTE+LK++D+G+IENV
Sbjct: 240 NVYERALVFAVQGVFFNAYFAAYLISPKLAHRIVGYLEEEAVLSYTEFLKELDNGNIENV 299

Query: 267 PAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           PAPAIAIDYWRLPKDATL+DV+ V+RADEAHHRDVNH+ASDI +QG++L+D+PAPLGYH
Sbjct: 300 PAPAIAIDYWRLPKDATLRDVVLVVRADEAHHRDVNHYASDIHYQGQQLKDSPAPLGYH 358


>gi|1588565|prf||2208475A alternative oxidase 1
          Length = 344

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 193/249 (77%), Positives = 225/249 (90%)

Query: 77  SYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRI 136
           SYWG+   ++T+EDGSPW W CF PWE Y +D+SIDLKKHH PTTFLDK+A+ TVK LR 
Sbjct: 96  SYWGVPPSRVTKEDGSPWRWACFRPWEAYESDMSIDLKKHHAPTTFLDKMAFWTVKSLRW 155

Query: 137 PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMH 196
           PTD+FFQRRYGCRAMMLETVAAVPGMVGG+LLHLKSLR+F+HSGGWIKALLEEAENERMH
Sbjct: 156 PTDIFFQRRYGCRAMMLETVAAVPGMVGGLLLHLKSLRRFEHSGGWIKALLEEAENERMH 215

Query: 197 LMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLK 256
           LMT +E+ +P+WYER LVL VQGVFFNA+F+ YLLSPK AHRVVGYLEEEAIHSYTE+LK
Sbjct: 216 LMTFMEVSQPRWYERALVLAVQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAIHSYTEFLK 275

Query: 257 DIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELR 316
           +ID G+I+NVPAPAIA+DYWRLP  +TL+DV+ V+RADEAHHRDVNHFASD+ +QG +L+
Sbjct: 276 EIDKGTIDNVPAPAIALDYWRLPPGSTLRDVVMVVRADEAHHRDVNHFASDVHYQGHQLK 335

Query: 317 DAPAPLGYH 325
           +APAPLGYH
Sbjct: 336 EAPAPLGYH 344


>gi|116488305|gb|ABJ98721.1| alternative oxidase [Gossypium hirsutum]
          Length = 331

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 199/288 (69%), Positives = 235/288 (81%), Gaps = 5/288 (1%)

Query: 43  LGLRMMVMMSSYSSSSESVPEKVKEKGENGIVPS-----SYWGISRPKITREDGSPWPWN 97
           LG+R    M++     +   +K    G  G         SYWG+   K+++EDGSPW W 
Sbjct: 44  LGVRCRSSMAAIGGGDKEQEKKQAVGGGGGSAKDDKEIVSYWGLDPTKVSKEDGSPWKWT 103

Query: 98  CFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVA 157
           CF PW+TYRADLSIDLKKHH P T LDK+AY TVK LR PTDLFFQRRYGCRAMMLETVA
Sbjct: 104 CFRPWDTYRADLSIDLKKHHAPVTVLDKMAYWTVKSLRWPTDLFFQRRYGCRAMMLETVA 163

Query: 158 AVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTV 217
           AVPGMVGGMLLH KSLR+F+HSGGWIKALLEEAENERMHLMT +E+  P+WYER LV +V
Sbjct: 164 AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVSDPRWYERALVFSV 223

Query: 218 QGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWR 277
           QGVFFNA+F+ Y++SPK AHRVVGYLEEEAIHSYTE+LK++D+G+IENVPAP IAIDYWR
Sbjct: 224 QGVFFNAYFLGYIISPKFAHRVVGYLEEEAIHSYTEFLKELDNGNIENVPAPPIAIDYWR 283

Query: 278 LPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           L  ++TL+DV+  +RADEAHHRDVNHFASDI +QG++L++APAPLGYH
Sbjct: 284 LSPNSTLRDVVLAVRADEAHHRDVNHFASDIHYQGRQLKEAPAPLGYH 331


>gi|57157824|dbj|BAD83866.1| skunk cabbage alternative oxidase [Symplocarpus renifolius]
          Length = 349

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 195/249 (78%), Positives = 224/249 (89%)

Query: 77  SYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRI 136
           S+WGI   K T+EDGS W W+CF PWETY ADLSIDLKKHH PTTFLDK+A+ TVK LR 
Sbjct: 101 SHWGIPPSKATKEDGSEWRWSCFRPWETYEADLSIDLKKHHAPTTFLDKLAFWTVKSLRY 160

Query: 137 PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMH 196
           PTD+FFQRRYGCRAMMLETVAAVPGMVGG+LLHLKSLR+F+HSGGWIK LL EAENERMH
Sbjct: 161 PTDVFFQRRYGCRAMMLETVAAVPGMVGGLLLHLKSLRRFEHSGGWIKTLLNEAENERMH 220

Query: 197 LMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLK 256
           LMT +E+ +P+WYER LVL VQGVFFNA+F+ YLLSPK AHRVVGYLEEEAIHSYTE++K
Sbjct: 221 LMTFMEVSEPRWYERALVLAVQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAIHSYTEFIK 280

Query: 257 DIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELR 316
           +ID+G+IENVPAPAIA+DYWRLP+ +TL+DV+ V+RADEAHHRDVNHFASDI +QG EL+
Sbjct: 281 EIDNGTIENVPAPAIALDYWRLPQGSTLRDVVMVVRADEAHHRDVNHFASDIHYQGHELK 340

Query: 317 DAPAPLGYH 325
            +PAPLGYH
Sbjct: 341 KSPAPLGYH 349


>gi|15228729|ref|NP_188875.1| alternative oxidase 1B [Arabidopsis thaliana]
 gi|3913143|sp|O23913.1|AOX1B_ARATH RecName: Full=Ubiquinol oxidase 1b, mitochondrial; AltName:
           Full=Alternative oxidase 1b; Flags: Precursor
 gi|2506082|dbj|BAA22624.1| alternative oxidase [Arabidopsis thaliana]
 gi|9293871|dbj|BAB01774.1| alternative oxidase 1b precursor [Arabidopsis thaliana]
 gi|67633654|gb|AAY78751.1| mitochondrial alternative oxidase 1b [Arabidopsis thaliana]
 gi|332643105|gb|AEE76626.1| alternative oxidase 1B [Arabidopsis thaliana]
          Length = 325

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 196/258 (75%), Positives = 230/258 (89%), Gaps = 2/258 (0%)

Query: 68  KGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVA 127
           KGE  IV  SYWG+   KIT+EDG+ W W+CF PWETY++DL+IDLKKHHVP+T  DK+A
Sbjct: 70  KGEQLIV--SYWGVKPMKITKEDGTEWKWSCFRPWETYKSDLTIDLKKHHVPSTLPDKLA 127

Query: 128 YRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALL 187
           Y TVK LR PTDLFFQRRYGCRAMMLETVAAVPGMVGGML+H KSLR+F+ SGGWIKALL
Sbjct: 128 YWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLVHCKSLRRFEQSGGWIKALL 187

Query: 188 EEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEA 247
           EEAENERMHLMT +E+ KP WYER LV+ VQG+FFNA+F+ YL+SPK AHR+VGYLEEEA
Sbjct: 188 EEAENERMHLMTFMEVAKPNWYERALVIAVQGIFFNAYFLGYLISPKFAHRMVGYLEEEA 247

Query: 248 IHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASD 307
           IHSYTE+LK++D+G+IENVPAPAIAIDYWRL  DATL+DV+ V+RADEAHHRDVNH+ASD
Sbjct: 248 IHSYTEFLKELDNGNIENVPAPAIAIDYWRLEADATLRDVVMVVRADEAHHRDVNHYASD 307

Query: 308 IQFQGKELRDAPAPLGYH 325
           I +QG+EL++APAP+GYH
Sbjct: 308 IHYQGRELKEAPAPIGYH 325


>gi|351720843|ref|NP_001236166.1| ubiquinol oxidase 1, mitochondrial [Glycine max]
 gi|3334449|sp|Q07185.1|AOX1_SOYBN RecName: Full=Ubiquinol oxidase 1, mitochondrial; AltName:
           Full=Alternative oxidase 1; Flags: Precursor
 gi|395216|emb|CAA48653.1| alternative oxidase [Glycine max]
 gi|740229|prf||2004454A respiratory chain terminal oxidase
          Length = 321

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 203/292 (69%), Positives = 240/292 (82%), Gaps = 10/292 (3%)

Query: 44  GLRMMVMMSSYSSSSESVPEKVKEKGENGI----------VPSSYWGISRPKITREDGSP 93
           GLR +      S S+ ++ EK K + + G+          V  SYWGI   KIT++DG+ 
Sbjct: 30  GLRALYGGGVRSESTLALSEKEKIEKKVGLSSAGGNKEEKVIVSYWGIQPSKITKKDGTE 89

Query: 94  WPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMML 153
           W WNCF PW TY+ADLSIDL+KH  PTTFLDK+A+ TVK+LR PTD+FFQRRYGCRAMML
Sbjct: 90  WKWNCFSPWGTYKADLSIDLEKHMPPTTFLDKMAFWTVKVLRYPTDVFFQRRYGCRAMML 149

Query: 154 ETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERML 213
           ETVAAVPGMV GMLLH KSLR+F+HSGGW KALLEEAENERMHLMT +E+ KPKWYER L
Sbjct: 150 ETVAAVPGMVAGMLLHCKSLRRFEHSGGWFKALLEEAENERMHLMTFMEVAKPKWYERAL 209

Query: 214 VLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAI 273
           V+TVQGVFFNA+F+ YLLSPK AHR+ GYLEEEAIHSYTE+LK++D G+IENVPAPAIAI
Sbjct: 210 VITVQGVFFNAYFLGYLLSPKFAHRMFGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAI 269

Query: 274 DYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           DYW+LP  +TL+DV+ V+RADEAHHRDVNHFASDI +QG+ELR+A AP+GYH
Sbjct: 270 DYWQLPPGSTLRDVVMVVRADEAHHRDVNHFASDIHYQGRELREAAAPIGYH 321


>gi|308153040|dbj|BAJ22109.1| alternative oxidase 1b [Arum maculatum]
          Length = 346

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 203/283 (71%), Positives = 235/283 (83%), Gaps = 12/283 (4%)

Query: 55  SSSSESVPEKVKEK-GENGIVP-----------SSYWGISRPKITREDGSPWPWNCFMPW 102
           S+ S+   +  KEK G  G VP           +SYWG+   ++T+EDGSPW W CF PW
Sbjct: 64  STLSDPAQDGGKEKAGTAGEVPPGEGGAEQKAVASYWGVPPSRMTKEDGSPWRWTCFRPW 123

Query: 103 ETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGM 162
           ETY  DLSIDLKKHH PTTFLDK+A  TVK LR PTD+FFQRRYGCRAMMLETVAAVPGM
Sbjct: 124 ETYEPDLSIDLKKHHAPTTFLDKMALWTVKSLRWPTDIFFQRRYGCRAMMLETVAAVPGM 183

Query: 163 VGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFF 222
           VGG+LLHLKSLR+F+HSGGWIK LLEEAENERMHLMT +E+ +P+WYER LVL VQGVFF
Sbjct: 184 VGGLLLHLKSLRRFEHSGGWIKTLLEEAENERMHLMTFMEVSQPRWYERALVLAVQGVFF 243

Query: 223 NAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDA 282
           NA+F+ YL+SPK AHRVVGYLEEEAIHSYTE+LK+ID G+IENVPAPAIA+DYWRLP  +
Sbjct: 244 NAYFLGYLISPKFAHRVVGYLEEEAIHSYTEFLKEIDKGTIENVPAPAIALDYWRLPPGS 303

Query: 283 TLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           TL+DV+ V+RADEAHHRDVNHFASD+ +QG +L+ APAPLGYH
Sbjct: 304 TLRDVVMVVRADEAHHRDVNHFASDVHYQGHQLKAAPAPLGYH 346


>gi|224135251|ref|XP_002322021.1| predicted protein [Populus trichocarpa]
 gi|222869017|gb|EEF06148.1| predicted protein [Populus trichocarpa]
          Length = 281

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 191/250 (76%), Positives = 226/250 (90%)

Query: 76  SSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLR 135
           +SYWG+   ++T+EDG+ W WNCF PWETY ADLSIDLKKHHVP T LDK+A+  VK LR
Sbjct: 32  ASYWGVPPSRVTKEDGAEWKWNCFRPWETYSADLSIDLKKHHVPATVLDKMAFWIVKALR 91

Query: 136 IPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERM 195
           +PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLH KSLR+F+HSGGWIK LL+EAENERM
Sbjct: 92  LPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKTLLDEAENERM 151

Query: 196 HLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYL 255
           HLMT +E+ KP+WYER LV+TVQGVF NA+F+ Y++SPK AHR+VGYLEEEAIHSYTE+L
Sbjct: 152 HLMTFMEVAKPRWYERALVITVQGVFLNAYFLGYIISPKFAHRMVGYLEEEAIHSYTEFL 211

Query: 256 KDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKEL 315
           K++D G+IENVPAPAIA+DYWRLP +ATL+DV+ V+RADEAHHRDVNHFASDI +QG+EL
Sbjct: 212 KELDKGNIENVPAPAIAVDYWRLPPNATLRDVVLVVRADEAHHRDVNHFASDIHYQGREL 271

Query: 316 RDAPAPLGYH 325
           ++APAP+GYH
Sbjct: 272 KEAPAPIGYH 281


>gi|297830952|ref|XP_002883358.1| hypothetical protein ARALYDRAFT_342380 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297329198|gb|EFH59617.1| hypothetical protein ARALYDRAFT_342380 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 324

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 196/258 (75%), Positives = 230/258 (89%), Gaps = 2/258 (0%)

Query: 68  KGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVA 127
           KGE  IV  SYWG+   KIT+EDG+ W W+CF PWETY++DL+IDLKKHHVP+T  DK+A
Sbjct: 69  KGEQLIV--SYWGVKPMKITKEDGTEWKWSCFRPWETYKSDLTIDLKKHHVPSTLSDKLA 126

Query: 128 YRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALL 187
           Y TVK LR PTD+FFQRRYGCRAMMLETVAAVPGMVGGML+H KSLR+F+ SGGWIKALL
Sbjct: 127 YWTVKSLRWPTDVFFQRRYGCRAMMLETVAAVPGMVGGMLVHCKSLRRFEQSGGWIKALL 186

Query: 188 EEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEA 247
           EEAENERMHLMT +E+ KP WYER LV+ VQGVFFNA+F+ YL+SPK AHR+VGYLEEEA
Sbjct: 187 EEAENERMHLMTFMEVAKPNWYERALVIAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEA 246

Query: 248 IHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASD 307
           IHSYTE+LK++D+G+IENVPAPAIAIDYWRL  DATL+DV+ V+RADEAHHRDVNH+ASD
Sbjct: 247 IHSYTEFLKELDNGNIENVPAPAIAIDYWRLEADATLRDVVMVVRADEAHHRDVNHYASD 306

Query: 308 IQFQGKELRDAPAPLGYH 325
           I +QG+EL++APAP+GYH
Sbjct: 307 IHYQGRELKEAPAPIGYH 324


>gi|82409049|gb|ABB73306.1| alternative oxidase [Gossypium hirsutum]
          Length = 330

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 192/249 (77%), Positives = 223/249 (89%)

Query: 77  SYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRI 136
           SYWG+   K+++EDGSPW W CF PW+TY+ADLSIDLKKHH P T LDK+AY TVK LR 
Sbjct: 82  SYWGLDPTKVSKEDGSPWKWTCFRPWDTYQADLSIDLKKHHAPVTVLDKMAYWTVKSLRW 141

Query: 137 PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMH 196
           PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLH KSLR+F+HSGGWIKALLEEAENERMH
Sbjct: 142 PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMH 201

Query: 197 LMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLK 256
           LMT +E+  P+WYER LV  VQGVFFNA+F+ Y++SPK AHRVVGYLEEEAIHSYTE+LK
Sbjct: 202 LMTFMEVSDPRWYERALVFAVQGVFFNAYFLGYIISPKFAHRVVGYLEEEAIHSYTEFLK 261

Query: 257 DIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELR 316
           ++D+G+IENVPAP IAIDYWRLP ++TL+DV+  +RADEAHHRDVNHFASDI +QG++L+
Sbjct: 262 ELDNGNIENVPAPPIAIDYWRLPPNSTLRDVVLAVRADEAHHRDVNHFASDIHYQGRQLK 321

Query: 317 DAPAPLGYH 325
           +APAPLGYH
Sbjct: 322 EAPAPLGYH 330


>gi|308153048|dbj|BAJ22113.1| alternative oxidase 1f [Arum maculatum]
          Length = 343

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 196/259 (75%), Positives = 224/259 (86%)

Query: 67  EKGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKV 126
           E G       SYWG+   ++T+EDGSPW W CF PWETY  DLSIDLKKHH PTTFLDK+
Sbjct: 85  EGGAEQKAVVSYWGVPPSRMTKEDGSPWRWTCFRPWETYEPDLSIDLKKHHAPTTFLDKM 144

Query: 127 AYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKAL 186
           A  TVK LR PTD+FFQRRYGCRAMMLETVAAVPGMVGG+LLHLKSLR+F+HSGGWIK L
Sbjct: 145 ALWTVKSLRWPTDIFFQRRYGCRAMMLETVAAVPGMVGGLLLHLKSLRRFEHSGGWIKTL 204

Query: 187 LEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEE 246
           LEEAENERMHLMT +E+ +P+WYER LVL VQGVFFNA+F+ YL+SPK AHRVVGYLEEE
Sbjct: 205 LEEAENERMHLMTFMEVSQPRWYERALVLAVQGVFFNAYFLGYLISPKFAHRVVGYLEEE 264

Query: 247 AIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFAS 306
           AIHSYTE+LK+ID G+IENVPAPAIA+DYWRLP  +TL+DV+ V+RADEAHHRDVNHFAS
Sbjct: 265 AIHSYTEFLKEIDKGTIENVPAPAIALDYWRLPPGSTLRDVVMVVRADEAHHRDVNHFAS 324

Query: 307 DIQFQGKELRDAPAPLGYH 325
           D+ +QG +L+ APAPLGYH
Sbjct: 325 DVHYQGHQLKAAPAPLGYH 343


>gi|357490777|ref|XP_003615676.1| Alternative oxidase [Medicago truncatula]
 gi|355517011|gb|AES98634.1| Alternative oxidase [Medicago truncatula]
          Length = 324

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 204/275 (74%), Positives = 237/275 (86%)

Query: 51  MSSYSSSSESVPEKVKEKGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLS 110
           MS+     +   E+ K+   +  V SSYWGISRPK+ +EDG+ WPWNCFMPWE+Y +D+S
Sbjct: 50  MSTLPEKKDQQTEESKKDANHNAVVSSYWGISRPKVLKEDGTEWPWNCFMPWESYSSDVS 109

Query: 111 IDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHL 170
           ID+ KHHVP TF DK A+R+VK LR+ +DL+F+ RYGC AMMLET+AAVPGMVGGMLLHL
Sbjct: 110 IDVTKHHVPKTFGDKFAFRSVKFLRVLSDLYFKERYGCHAMMLETIAAVPGMVGGMLLHL 169

Query: 171 KSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYL 230
           KSLRKFQH+GGWIKALLEEAENERMHLMTMVELVKP W+ER+LV+T QGVFFN FFV Y+
Sbjct: 170 KSLRKFQHAGGWIKALLEEAENERMHLMTMVELVKPSWHERLLVITAQGVFFNGFFVFYI 229

Query: 231 LSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITV 290
           LSPK+AHR VGYLEEEA+ SYT+YL  I+SG +ENVPAPAIAIDYWRLP DATLKDV+TV
Sbjct: 230 LSPKIAHRFVGYLEEEAVISYTQYLNAIESGKVENVPAPAIAIDYWRLPNDATLKDVVTV 289

Query: 291 IRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           IRADEAHHRDVNHFASDI  QGKEL++APAP+GYH
Sbjct: 290 IRADEAHHRDVNHFASDIHHQGKELKEAPAPVGYH 324


>gi|330690264|gb|AEC33278.1| mitochondrial alternative oxidase 1 [Hordeum vulgare subsp.
           spontaneum]
          Length = 328

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 196/265 (73%), Positives = 228/265 (86%), Gaps = 2/265 (0%)

Query: 63  EKVKEKGENGIVP-SSYWGISR-PKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPT 120
           E  K++GE   V  SSYWGI +  K+ R+DG+ W W+CF PWETY AD SIDL  HH+P 
Sbjct: 64  EAAKDEGEKKDVAISSYWGIDQLRKLARDDGTEWKWSCFRPWETYTADTSIDLTTHHMPN 123

Query: 121 TFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSG 180
           T  DK+AY TVK LR PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLHL+SLR+F+ SG
Sbjct: 124 TMPDKLAYFTVKSLRFPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEQSG 183

Query: 181 GWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVV 240
           GWI+ALLEEAENERMHLMT +E+ +P+WYER LV+ VQGVFFNA+F+ YLLSPK AHRVV
Sbjct: 184 GWIRALLEEAENERMHLMTFMEVAQPRWYERALVIVVQGVFFNAYFIGYLLSPKFAHRVV 243

Query: 241 GYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRD 300
           GYLEEEA+HSYTE+LKD+D G IENVPAPAIAIDYWRLP +ATLKDV+TV+RADEAHHRD
Sbjct: 244 GYLEEEAVHSYTEFLKDLDDGKIENVPAPAIAIDYWRLPANATLKDVVTVVRADEAHHRD 303

Query: 301 VNHFASDIQFQGKELRDAPAPLGYH 325
           VNHFASD+ +QG +L+ APAP+GYH
Sbjct: 304 VNHFASDVYYQGMKLKTAPAPIGYH 328


>gi|115448119|ref|NP_001047839.1| Os02g0700400 [Oryza sativa Japonica Group]
 gi|16902306|dbj|BAB71944.1| alternative oxidase 1c [Oryza sativa Japonica Group]
 gi|16902308|dbj|BAB71945.1| alternative oxidase 1c [Oryza sativa Japonica Group]
 gi|41052670|dbj|BAD07517.1| alternative oxidase 1c [Oryza sativa Japonica Group]
 gi|41052978|dbj|BAD07888.1| alternative oxidase 1c [Oryza sativa Japonica Group]
 gi|113537370|dbj|BAF09753.1| Os02g0700400 [Oryza sativa Japonica Group]
 gi|125540792|gb|EAY87187.1| hypothetical protein OsI_08589 [Oryza sativa Indica Group]
          Length = 345

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 197/252 (78%), Positives = 219/252 (86%)

Query: 74  VPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKL 133
           V SSYWGI   K+  +DG  W W+CF PWETY  D +IDLKKHH P   LDKVAY TVK 
Sbjct: 94  VASSYWGIEASKLASKDGVEWKWSCFRPWETYSPDTTIDLKKHHEPKVLLDKVAYWTVKA 153

Query: 134 LRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENE 193
           LR+PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLHL+SLR+F+HSGGWI+ALLEEAENE
Sbjct: 154 LRVPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEHSGGWIRALLEEAENE 213

Query: 194 RMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTE 253
           RMHLMT +E+ KP+WYER LVL VQGVFFNA+F+ YLLSPKLAHRVVGYLEEEAIHSYTE
Sbjct: 214 RMHLMTFMEVAKPRWYERALVLAVQGVFFNAYFLGYLLSPKLAHRVVGYLEEEAIHSYTE 273

Query: 254 YLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGK 313
           YLKDI++G IENVPAP IAIDYWRLP  ATLKDV+ V+RADEAHHRDVNHFASD+ FQG 
Sbjct: 274 YLKDIEAGKIENVPAPPIAIDYWRLPAGATLKDVVVVVRADEAHHRDVNHFASDVHFQGM 333

Query: 314 ELRDAPAPLGYH 325
           +L+D PAPL YH
Sbjct: 334 DLKDIPAPLDYH 345


>gi|3599419|gb|AAC35354.1| alternative oxidase precursor [Glycine max]
          Length = 321

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 202/292 (69%), Positives = 239/292 (81%), Gaps = 10/292 (3%)

Query: 44  GLRMMVMMSSYSSSSESVPEKVKEKGENGI----------VPSSYWGISRPKITREDGSP 93
           GLR +      S S+ ++ EK K + + G+          V  SYWGI   KIT++DG+ 
Sbjct: 30  GLRALYGGGVRSESTLALSEKEKIEKKVGLSSAGGNKEEKVIVSYWGIQPSKITKKDGTE 89

Query: 94  WPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMML 153
           W WNCF  W TY+ADLSIDL+KH  PTTFLDK+A+ TVK+LR PTD+FFQRRYGCRAMML
Sbjct: 90  WKWNCFRAWGTYKADLSIDLEKHMPPTTFLDKMAFWTVKVLRYPTDVFFQRRYGCRAMML 149

Query: 154 ETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERML 213
           ETVAAVPGMV GM LH KSLR+F+HSGGW KALLEEAENERMHLMT +E+ KPKWYER L
Sbjct: 150 ETVAAVPGMVAGMQLHCKSLRRFEHSGGWFKALLEEAENERMHLMTFMEVAKPKWYERAL 209

Query: 214 VLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAI 273
           V+TVQGVFFNA+F+ YLLSPK AHR+VGYLEEEAIHSYTE+LK++D G+IENVPAPAIAI
Sbjct: 210 VITVQGVFFNAYFLGYLLSPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAI 269

Query: 274 DYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           DYW+LP  +TL+DV+ V+RADEAHHRDVNHFASDI +QG+ELR+A AP+GYH
Sbjct: 270 DYWQLPPGSTLRDVVMVVRADEAHHRDVNHFASDIHYQGRELREAAAPIGYH 321


>gi|297818362|ref|XP_002877064.1| hypothetical protein ARALYDRAFT_347138 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322902|gb|EFH53323.1| hypothetical protein ARALYDRAFT_347138 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 330

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 198/271 (73%), Positives = 230/271 (84%), Gaps = 2/271 (0%)

Query: 55  SSSSESVPEKVKEKGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLK 114
           S   E   ++   K E  IV  SYWG+   KIT+EDG+ W W CF PWETY+ADL+IDLK
Sbjct: 62  SGDGEKANDQGSNKWEQLIV--SYWGVKPMKITKEDGTEWKWTCFRPWETYKADLTIDLK 119

Query: 115 KHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLR 174
           KHHVP+T  DK+AY  VK LR PTDLFFQRRYGCRAMMLETVAAVPGMVGGML+H KSLR
Sbjct: 120 KHHVPSTLPDKLAYWMVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLMHFKSLR 179

Query: 175 KFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPK 234
           +F+ SGGWIKALLEEAENERMHLMT +E+ KPKWYER LV+ VQGVFFNA+ + YL+SPK
Sbjct: 180 RFEQSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVIAVQGVFFNAYLLGYLISPK 239

Query: 235 LAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRAD 294
            AHR+VGYLEEEAIHSYTE+LK++D+G+IENVPAPAIAIDYWRL  DATL+DV+ V+RAD
Sbjct: 240 FAHRMVGYLEEEAIHSYTEFLKELDNGNIENVPAPAIAIDYWRLEADATLRDVVMVVRAD 299

Query: 295 EAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           EAHHRDVNH+ASDI +QG EL++APAP+GYH
Sbjct: 300 EAHHRDVNHYASDIHYQGHELKEAPAPIGYH 330


>gi|15232222|ref|NP_189399.1| alternative oxidase 1C [Arabidopsis thaliana]
 gi|3913142|sp|O22048.1|AOX1C_ARATH RecName: Full=Ubiquinol oxidase 1c, mitochondrial; AltName:
           Full=Alternative oxidase 1c; Flags: Precursor
 gi|2506049|dbj|BAA22635.1| alternative oxidase [Arabidopsis thaliana]
 gi|9294467|dbj|BAB02686.1| alternative oxidase [Arabidopsis thaliana]
 gi|28393506|gb|AAO42174.1| putative alternative oxidase 1c precursor [Arabidopsis thaliana]
 gi|28973125|gb|AAO63887.1| putative alternative oxidase 1c precursor [Arabidopsis thaliana]
 gi|332643824|gb|AEE77345.1| alternative oxidase 1C [Arabidopsis thaliana]
          Length = 329

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 194/258 (75%), Positives = 229/258 (88%), Gaps = 2/258 (0%)

Query: 68  KGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVA 127
           KGE  IV  SYWG+   KIT+EDG+ W W+CF PWETY+ADL+IDLKKHHVP+T  DK+A
Sbjct: 74  KGEQLIV--SYWGVKPMKITKEDGTEWKWSCFRPWETYKADLTIDLKKHHVPSTLPDKIA 131

Query: 128 YRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALL 187
           Y  VK LR PTDLFFQRRYGCRA+MLETVAAVPGMVGGML+H KSLR+F+ SGGWIKALL
Sbjct: 132 YWMVKSLRWPTDLFFQRRYGCRAIMLETVAAVPGMVGGMLMHFKSLRRFEQSGGWIKALL 191

Query: 188 EEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEA 247
           EEAENERMHLMT +E+ KPKWYER LV++VQGVFFNA+ + Y++SPK AHR+VGYLEEEA
Sbjct: 192 EEAENERMHLMTFMEVAKPKWYERALVISVQGVFFNAYLIGYIISPKFAHRMVGYLEEEA 251

Query: 248 IHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASD 307
           IHSYTE+LK++D+G+IENVPAPAIA+DYWRL  DATL+DV+ V+RADEAHHRDVNH+ASD
Sbjct: 252 IHSYTEFLKELDNGNIENVPAPAIAVDYWRLEADATLRDVVMVVRADEAHHRDVNHYASD 311

Query: 308 IQFQGKELRDAPAPLGYH 325
           I +QG EL++APAP+GYH
Sbjct: 312 IHYQGHELKEAPAPIGYH 329


>gi|12583703|dbj|BAB21500.1| alternative oxidase [Catharanthus roseus]
          Length = 353

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 207/327 (63%), Positives = 251/327 (76%), Gaps = 15/327 (4%)

Query: 14  INGRKHSIGY---ARTVVRCHPNVWDGDDMPLLGLRMMVMMSSYSSSS-ESVPEKVKEK- 68
           + G + S+G      T    H N  +G +   L    + MM + S+S+  +V +K K++ 
Sbjct: 27  VRGHEPSLGILTSGGTTTFLHGNPGNGSERTALTWIKLPMMRARSASTVATVDQKDKDEK 86

Query: 69  ---------GENG-IVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHV 118
                    GENG     SYWG+  PK+T+EDG+ W W CF PWETY+ D  I+LKKHHV
Sbjct: 87  REDKNGVADGENGNKAVVSYWGVEAPKLTKEDGTVWRWTCFRPWETYKPDTDIELKKHHV 146

Query: 119 PTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQH 178
           P T LDKVA+ TVK LR PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLH KSLR+F+H
Sbjct: 147 PVTLLDKVAFFTVKALRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEH 206

Query: 179 SGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHR 238
           SGGWIKALLEEAENERMHLMT +E+ KP+WYER LV  VQGVFFNA+F+ YL SPKLAHR
Sbjct: 207 SGGWIKALLEEAENERMHLMTFMEVSKPRWYERALVFAVQGVFFNAYFLTYLASPKLAHR 266

Query: 239 VVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHH 298
           +VGYLEEEAIHSY+E+L ++D G+IENVPAPAIAIDYW++P D+TL+DV+ V+RADEAHH
Sbjct: 267 IVGYLEEEAIHSYSEFLNELDKGNIENVPAPAIAIDYWQMPPDSTLRDVVMVVRADEAHH 326

Query: 299 RDVNHFASDIQFQGKELRDAPAPLGYH 325
           RDVNH+ASDI ++G EL++A APL YH
Sbjct: 327 RDVNHYASDIHYKGLELKEAAAPLDYH 353


>gi|308153046|dbj|BAJ22112.1| alternative oxidase 1e [Arum maculatum]
          Length = 343

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 193/259 (74%), Positives = 224/259 (86%)

Query: 67  EKGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKV 126
           E G       SYWG+   ++++EDGS W W CF PW+TY+ADLSIDL+KHH PTT LDK+
Sbjct: 85  EGGAEQKAVVSYWGVPPSRVSKEDGSEWRWTCFRPWDTYQADLSIDLQKHHAPTTILDKL 144

Query: 127 AYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKAL 186
           A  TVK LR PTD+FFQRRY CRAMMLETVAAVPGMVGG+LLHLKSLR+F HSGGWIKAL
Sbjct: 145 ALYTVKALRWPTDIFFQRRYACRAMMLETVAAVPGMVGGVLLHLKSLRRFDHSGGWIKAL 204

Query: 187 LEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEE 246
           LEEAENERMHLMT +E+ +P+WYER LV+ VQGVFFNA+FV YLLSPK AHRVVGYLEEE
Sbjct: 205 LEEAENERMHLMTFMEVAQPRWYERALVVAVQGVFFNAYFVGYLLSPKFAHRVVGYLEEE 264

Query: 247 AIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFAS 306
           AIHSYTE+LKDIDSG+I+N PAPAIA+DYWRLP+ +TL+DV+ V+RADEAHHRDVNHFAS
Sbjct: 265 AIHSYTEFLKDIDSGAIQNTPAPAIALDYWRLPQGSTLRDVVAVVRADEAHHRDVNHFAS 324

Query: 307 DIQFQGKELRDAPAPLGYH 325
           D+ +QG +L+ APAPLGYH
Sbjct: 325 DVHYQGHQLKAAPAPLGYH 343


>gi|113982|sp|P22185.1|AOX1_TYPVN RecName: Full=Ubiquinol oxidase 1, mitochondrial; AltName:
           Full=Alternative oxidase 1; Flags: Precursor
 gi|170165|gb|AAA34048.1| alternative oxidase protein [Typhonium venosum]
          Length = 349

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 198/274 (72%), Positives = 228/274 (83%), Gaps = 12/274 (4%)

Query: 64  KVKEKGENGIVPS------------SYWGISRPKITREDGSPWPWNCFMPWETYRADLSI 111
           K K  G  G VP             SYW +   K+++EDGS W W CF PWETY+ADLSI
Sbjct: 76  KEKAAGTAGKVPPGEDGGAEKEAVVSYWAVPPSKVSKEDGSEWRWTCFRPWETYQADLSI 135

Query: 112 DLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLK 171
           DL KHHVPTT LDK+A RTVK LR PTD+FFQRRY CRAMMLETVAAVPGMVGG+LLHLK
Sbjct: 136 DLHKHHVPTTILDKLALRTVKALRWPTDIFFQRRYACRAMMLETVAAVPGMVGGVLLHLK 195

Query: 172 SLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLL 231
           SLR+F+HSGGWI+ALLEEAENERMHLMT +E+ +P+WYER LVL VQGVFFNA+F+ YLL
Sbjct: 196 SLRRFEHSGGWIRALLEEAENERMHLMTFMEVAQPRWYERALVLAVQGVFFNAYFLGYLL 255

Query: 232 SPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVI 291
           SPK AHRVVGYLEEEAIHSYTE+LKDIDSG+I++ PAPAIA+DYWRLP+ +TL+DV+TV+
Sbjct: 256 SPKFAHRVVGYLEEEAIHSYTEFLKDIDSGAIQDCPAPAIALDYWRLPQGSTLRDVVTVV 315

Query: 292 RADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           RADEAHHRDVNHFASD+ +Q  EL+  PAPLGYH
Sbjct: 316 RADEAHHRDVNHFASDVHYQDLELKTTPAPLGYH 349


>gi|357165610|ref|XP_003580438.1| PREDICTED: alternative oxidase 1a, mitochondrial-like [Brachypodium
           distachyon]
          Length = 333

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 194/262 (74%), Positives = 228/262 (87%), Gaps = 2/262 (0%)

Query: 66  KEKGENG-IVPSSYWGISRPK-ITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFL 123
           KE GE   +V +SYWGI + K + REDG+ W W+CF PWETY AD SIDL KHHVP T L
Sbjct: 72  KEGGEKKEVVVNSYWGIEQAKKLVREDGTEWKWSCFRPWETYTADTSIDLTKHHVPKTML 131

Query: 124 DKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWI 183
           DK+AY TVK LR PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLHL+SLR+F+ SGGWI
Sbjct: 132 DKIAYWTVKSLRFPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEQSGGWI 191

Query: 184 KALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYL 243
           +ALLEEAENERMHLMT +E+ +P+WYER LV+ VQGVFFNA+F  YL+SPK AHRVVGYL
Sbjct: 192 RALLEEAENERMHLMTFMEVAQPRWYERALVIAVQGVFFNAYFFGYLISPKFAHRVVGYL 251

Query: 244 EEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNH 303
           EEEA+HSYTE+LKD+++G I++VPAP+IAIDYWRLP +ATLKDV+TV+RADEAHHRDVNH
Sbjct: 252 EEEAVHSYTEFLKDLEAGKIDDVPAPSIAIDYWRLPANATLKDVVTVVRADEAHHRDVNH 311

Query: 304 FASDIQFQGKELRDAPAPLGYH 325
           FASD+ +QG EL+  PAP+GYH
Sbjct: 312 FASDVYYQGMELKATPAPIGYH 333


>gi|21216|emb|CAA78823.1| salicylic acid-inducible alternative oxidase [Typhonium venosum]
          Length = 349

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 197/274 (71%), Positives = 228/274 (83%), Gaps = 12/274 (4%)

Query: 64  KVKEKGENGIVPS------------SYWGISRPKITREDGSPWPWNCFMPWETYRADLSI 111
           K K  G  G VP             SYW +   K+++EDGS W W CF PWETY+ADLSI
Sbjct: 76  KEKAAGTAGKVPPGEDGGAEKEAVVSYWAVPPSKVSKEDGSEWRWTCFRPWETYQADLSI 135

Query: 112 DLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLK 171
           DL KHHVPTT LDK+A RTVK LR PTD+FFQRRY CRAMMLETVAAVPGMVGG+LLHLK
Sbjct: 136 DLHKHHVPTTILDKLALRTVKALRWPTDIFFQRRYACRAMMLETVAAVPGMVGGVLLHLK 195

Query: 172 SLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLL 231
           SLR+F+HSGGWI+ALLEEAENERMHLMT +E+ +P+WYER LVL VQGVFFNA+F+ YLL
Sbjct: 196 SLRRFEHSGGWIRALLEEAENERMHLMTFMEVAQPRWYERALVLAVQGVFFNAYFLGYLL 255

Query: 232 SPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVI 291
           SPK AHRVVGYLEEEAIHSYTE+LKDID+G+I++ PAPAIA+DYWRLP+ +TL+DV+TV+
Sbjct: 256 SPKFAHRVVGYLEEEAIHSYTEFLKDIDNGAIQDCPAPAIALDYWRLPQGSTLRDVVTVV 315

Query: 292 RADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           RADEAHHRDVNHFASD+ +Q  EL+  PAPLGYH
Sbjct: 316 RADEAHHRDVNHFASDVHYQDLELKTTPAPLGYH 349


>gi|242062814|ref|XP_002452696.1| hypothetical protein SORBIDRAFT_04g030820 [Sorghum bicolor]
 gi|241932527|gb|EES05672.1| hypothetical protein SORBIDRAFT_04g030820 [Sorghum bicolor]
          Length = 346

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 192/257 (74%), Positives = 223/257 (86%)

Query: 69  GENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAY 128
           G+   V SSYWG++  K+  +DG  W W+CF PWE Y+ D SIDL +HH P   LDK+AY
Sbjct: 90  GKKDKVVSSYWGVAPSKLMSKDGVEWRWSCFRPWEAYKPDTSIDLTRHHEPKVLLDKIAY 149

Query: 129 RTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLE 188
            TVKLLR+PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLHL+SLR+F+HSGGWI+ALLE
Sbjct: 150 WTVKLLRVPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEHSGGWIRALLE 209

Query: 189 EAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAI 248
           EAENERMHLMT +E+ KPKWYER LVL VQGVFFNA+F+ YL+SPK AHRVVGYLEEEAI
Sbjct: 210 EAENERMHLMTFMEVAKPKWYERALVLAVQGVFFNAYFLGYLISPKFAHRVVGYLEEEAI 269

Query: 249 HSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDI 308
           HSYTEYLKD+++G IENVPAPAIAIDYW+LP DATLKDV+ V+R+DEAHHRDVNHFASDI
Sbjct: 270 HSYTEYLKDLEAGKIENVPAPAIAIDYWQLPADATLKDVVVVVRSDEAHHRDVNHFASDI 329

Query: 309 QFQGKELRDAPAPLGYH 325
            FQG +L++ PAP+ YH
Sbjct: 330 HFQGMQLKETPAPIEYH 346


>gi|162462383|ref|NP_001105179.1| alternative oxidase AOX1 precursor [Zea mays]
 gi|25989197|gb|AAL27795.1| alternative oxidase AOX1 precursor [Zea mays]
 gi|194690594|gb|ACF79381.1| unknown [Zea mays]
 gi|194703950|gb|ACF86059.1| unknown [Zea mays]
 gi|223974129|gb|ACN31252.1| unknown [Zea mays]
 gi|238011470|gb|ACR36770.1| unknown [Zea mays]
 gi|413938400|gb|AFW72951.1| hypothetical protein ZEAMMB73_439635 [Zea mays]
          Length = 347

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 191/257 (74%), Positives = 224/257 (87%)

Query: 69  GENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAY 128
           G+   V SSYWG++  K+  +DG+ W W+CF PWE Y+ D +IDL +HH P   LDK+AY
Sbjct: 91  GKRDKVVSSYWGVAPSKLMNKDGAEWRWSCFRPWEAYKPDTTIDLNRHHEPKVLLDKIAY 150

Query: 129 RTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLE 188
            TVKLLR+PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLHL+SLR+F+HSGGWI+ALLE
Sbjct: 151 WTVKLLRVPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEHSGGWIRALLE 210

Query: 189 EAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAI 248
           EAENERMHLMT +E+ KPKWYER LVL VQGVFFNA+F+ YL+SPK AHRVVGYLEEEAI
Sbjct: 211 EAENERMHLMTFMEVAKPKWYERALVLAVQGVFFNAYFLGYLISPKFAHRVVGYLEEEAI 270

Query: 249 HSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDI 308
           HSYTEYLKD+++G IENVPAPAIAIDYW+LP DATLKDV+ V+R+DEAHHRDVNHFASDI
Sbjct: 271 HSYTEYLKDLEAGKIENVPAPAIAIDYWQLPADATLKDVVVVVRSDEAHHRDVNHFASDI 330

Query: 309 QFQGKELRDAPAPLGYH 325
            FQG +L++ PAP+ YH
Sbjct: 331 HFQGMQLKETPAPIEYH 347


>gi|297851678|ref|XP_002893720.1| At1g32350/F5D14.4 [Arabidopsis lyrata subsp. lyrata]
 gi|297339562|gb|EFH69979.1| At1g32350/F5D14.4 [Arabidopsis lyrata subsp. lyrata]
          Length = 315

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 193/284 (67%), Positives = 235/284 (82%), Gaps = 1/284 (0%)

Query: 42  LLGLRMMVMMSSYSSSSESVPEKVKEKGENGIVPSSYWGISRPKITREDGSPWPWNCFMP 101
           L  +R +   +S  +S  + PEK  +  + G V S+YWGI   KIT+ DGS W WNCF P
Sbjct: 33  LSTVRFLSSDTSSPASGNNQPEKPVQTAD-GKVMSTYWGIPPAKITKPDGSAWKWNCFQP 91

Query: 102 WETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPG 161
           W++Y+ D+SID+ KHH P+ F DK AY TV+ L+IP  LFFQR++ C AM+LETVAAVPG
Sbjct: 92  WDSYKPDVSIDVTKHHKPSNFTDKFAYWTVQTLKIPVQLFFQRKHMCHAMLLETVAAVPG 151

Query: 162 MVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVF 221
           MVGGMLLHLKSLR+F+HSGGWIKALLEEAENERMHLMT +EL +PKWYER +V TVQG F
Sbjct: 152 MVGGMLLHLKSLRRFEHSGGWIKALLEEAENERMHLMTFIELSQPKWYERAIVFTVQGAF 211

Query: 222 FNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKD 281
           FNA+F+ Y++SPKLAHR+ GYLEEEA++SYTE+LKDID+G  EN PAPAIAIDYWRLPKD
Sbjct: 212 FNAYFLAYVISPKLAHRITGYLEEEAVNSYTEFLKDIDAGKFENSPAPAIAIDYWRLPKD 271

Query: 282 ATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           ATL+DV+ VIRADEAHHRD+NH+ASDIQF+G EL++APAP+GYH
Sbjct: 272 ATLRDVVYVIRADEAHHRDINHYASDIQFKGHELKEAPAPIGYH 315


>gi|323575420|dbj|BAJ78238.1| alternative oxidase 1g [Arum maculatum]
          Length = 343

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 192/259 (74%), Positives = 223/259 (86%)

Query: 67  EKGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKV 126
           E G       SYWG+   ++++EDGS W W CF PW+TY+ADLSIDL+KHH PTT LDK+
Sbjct: 85  EGGAEQKAVVSYWGVPPSRVSKEDGSEWRWTCFRPWDTYQADLSIDLQKHHAPTTILDKL 144

Query: 127 AYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKAL 186
           A  TVK LR PTD+FFQRRY CRAMMLETVAAVPGMVGG+LLHLKSLR+F HSGGWIKAL
Sbjct: 145 ALYTVKALRWPTDIFFQRRYACRAMMLETVAAVPGMVGGVLLHLKSLRRFDHSGGWIKAL 204

Query: 187 LEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEE 246
           LEEAENERMHLMT +E+ +P+WYER LV+ VQGVFFNA+FV YLLSPK AHRVVGYLEEE
Sbjct: 205 LEEAENERMHLMTFMEVAQPRWYERALVVAVQGVFFNAYFVGYLLSPKFAHRVVGYLEEE 264

Query: 247 AIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFAS 306
           AIHSYTE+LKDIDSG+I++ PAPAIA+DYWRLP+ +TL+DV+ V+RADEAHHRDVNHFAS
Sbjct: 265 AIHSYTEFLKDIDSGAIQDTPAPAIALDYWRLPQGSTLRDVVAVVRADEAHHRDVNHFAS 324

Query: 307 DIQFQGKELRDAPAPLGYH 325
           D+ +QG EL+  PAPLGYH
Sbjct: 325 DVHYQGLELKTTPAPLGYH 343


>gi|388501212|gb|AFK38672.1| unknown [Lotus japonicus]
          Length = 314

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 202/269 (75%), Positives = 229/269 (85%)

Query: 57  SSESVPEKVKEKGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKH 116
           S E   E  +    N  V  SYWGI+RPK+ REDG+ WPWNCF PW++YRAD+SID+ KH
Sbjct: 46  SEEKKSEVNRNDSSNNTVVPSYWGITRPKVRREDGTEWPWNCFSPWDSYRADVSIDVTKH 105

Query: 117 HVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKF 176
           H+P T  DKVA+R VK LR+ +DL+F+ RYGC AMMLET+AAVPGMVGGMLLHLKSLRKF
Sbjct: 106 HLPKTVTDKVAFRAVKFLRVLSDLYFKERYGCHAMMLETIAAVPGMVGGMLLHLKSLRKF 165

Query: 177 QHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLA 236
           QHSGGWIKALLEEAENERMHLMTM ELVKP W+ER+LV+T QGVFFN FFV YLLSPK A
Sbjct: 166 QHSGGWIKALLEEAENERMHLMTMTELVKPSWHERLLVITAQGVFFNFFFVFYLLSPKAA 225

Query: 237 HRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEA 296
           HR VGYLEEEA+ SYT++L  I+ G +ENVPAPAIAIDYWRLPKDATLKDV+TVIRADEA
Sbjct: 226 HRFVGYLEEEAVISYTDHLNAIERGEVENVPAPAIAIDYWRLPKDATLKDVVTVIRADEA 285

Query: 297 HHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           HHRDVNHFASDI  QGKEL++APAP+GYH
Sbjct: 286 HHRDVNHFASDIHHQGKELKEAPAPVGYH 314


>gi|308153038|dbj|BAJ22108.1| alternative oxidase 1a [Arum maculatum]
          Length = 347

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 192/259 (74%), Positives = 224/259 (86%)

Query: 67  EKGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKV 126
           E G       SYWG+   ++++EDGS W W CF PW+TY+ADLSIDL+KHH PTT LDK+
Sbjct: 89  EGGAEQKAVVSYWGVPPSRVSKEDGSEWRWTCFRPWDTYQADLSIDLQKHHAPTTILDKL 148

Query: 127 AYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKAL 186
           A  TVK LR PTD+FFQRRYGCRAMMLETVAAVPGMVGG+LLHLKSLR+F+HSGGWIK L
Sbjct: 149 ALYTVKALRWPTDIFFQRRYGCRAMMLETVAAVPGMVGGLLLHLKSLRRFEHSGGWIKTL 208

Query: 187 LEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEE 246
           LEEAENERMHLMT +E+ +P+WYER LVL VQGVFFNA+F+ YL+SPK AHRVVGYLEEE
Sbjct: 209 LEEAENERMHLMTFMEVSQPRWYERALVLAVQGVFFNAYFLGYLISPKFAHRVVGYLEEE 268

Query: 247 AIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFAS 306
           AIHSYTE+LK+ID G+IENVPAPAIA+DYWRLP  +TL+DV+ V+RADEAHHRDVNHFAS
Sbjct: 269 AIHSYTEFLKEIDKGTIENVPAPAIALDYWRLPPGSTLRDVVMVVRADEAHHRDVNHFAS 328

Query: 307 DIQFQGKELRDAPAPLGYH 325
           D+ +QG +L+ APAPLGYH
Sbjct: 329 DVHYQGHQLKAAPAPLGYH 347


>gi|2696032|dbj|BAA23803.1| alternative oxidase [Catharanthus roseus]
          Length = 353

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 206/327 (62%), Positives = 250/327 (76%), Gaps = 15/327 (4%)

Query: 14  INGRKHSIGY---ARTVVRCHPNVWDGDDMPLLGLRMMVMMSSYSSSS-ESVPEKVKEK- 68
           + G + S+G      T    H N  +G +   L    + MM + S+S+  +V +K K++ 
Sbjct: 27  VRGHEPSLGILTSGGTTTFLHGNPGNGSERTALTWIKLPMMRARSASTVATVDQKDKDEK 86

Query: 69  ---------GENG-IVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHV 118
                    GENG     SYWG+  PK+T+EDG+ W W CF PWETY+ D  I+LKKHHV
Sbjct: 87  REDKNGVADGENGNKAVVSYWGVEAPKLTKEDGTVWRWTCFRPWETYKPDTDIELKKHHV 146

Query: 119 PTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQH 178
           P T LDKVA+ TVK LR PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLH KSLR+F+H
Sbjct: 147 PVTLLDKVAFFTVKALRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEH 206

Query: 179 SGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHR 238
           SGGWIKALLEEAENERMHLMT +E+ KP+WYER LV  VQGVFFNA+F+ YL SPKLAHR
Sbjct: 207 SGGWIKALLEEAENERMHLMTFMEVSKPRWYERALVFAVQGVFFNAYFLTYLASPKLAHR 266

Query: 239 VVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHH 298
           +VGYLEEEAIHSY+E+L ++D G+IENVPAPAIAIDYW++P D+TL+DV+ V+RADEA H
Sbjct: 267 IVGYLEEEAIHSYSEFLNELDKGNIENVPAPAIAIDYWQMPPDSTLRDVVMVVRADEALH 326

Query: 299 RDVNHFASDIQFQGKELRDAPAPLGYH 325
           RDVNH+ASDI ++G EL++A APL YH
Sbjct: 327 RDVNHYASDIHYKGLELKEAAAPLDYH 353


>gi|5802557|gb|AAD51707.1| alternative oxidase [Triticum aestivum]
          Length = 274

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 191/251 (76%), Positives = 220/251 (87%), Gaps = 1/251 (0%)

Query: 76  SSYWGISRPK-ITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLL 134
           SSYWGI + K + REDG+ W W+CF PWETY AD SID  KHHVP T LDK+AY TVK L
Sbjct: 24  SSYWGIEQSKKLVREDGTEWKWSCFRPWETYTADTSIDPTKHHVPNTMLDKIAYYTVKSL 83

Query: 135 RIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENER 194
           R PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLHL+SLR+F+ SGGWI+ALLEEAENER
Sbjct: 84  RFPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEQSGGWIRALLEEAENER 143

Query: 195 MHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEY 254
           MHLMT +E+ +P+WYER LV+ VQGVFFNA+F  YL+SPK AHRVVGYLEEEA+HSYTE+
Sbjct: 144 MHLMTFMEVAQPRWYERALVIAVQGVFFNAYFFGYLISPKFAHRVVGYLEEEAVHSYTEF 203

Query: 255 LKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKE 314
           LKD+D G I+NVPAPAIAIDYWRLP +ATLKDV+TV+RADEAHHRDVNHFASD+ +QG +
Sbjct: 204 LKDLDDGKIDNVPAPAIAIDYWRLPANATLKDVVTVVRADEAHHRDVNHFASDVYYQGMQ 263

Query: 315 LRDAPAPLGYH 325
           L+  PAP+GYH
Sbjct: 264 LKATPAPIGYH 274


>gi|308153044|dbj|BAJ22111.1| alternative oxidase 1d [Arum maculatum]
          Length = 343

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 192/259 (74%), Positives = 223/259 (86%)

Query: 67  EKGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKV 126
           E G       SYWG+   ++++EDGS W W CF PW+TY+ADLSIDL+KHH PTT LDK+
Sbjct: 85  EGGAEQKAVVSYWGVPPSRVSKEDGSEWRWTCFRPWDTYQADLSIDLQKHHAPTTILDKL 144

Query: 127 AYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKAL 186
           A  TVK LR PTD+FFQRRY CRAMMLETVAAVPGMVGG+LLHLKSLR+F HSGGWIKAL
Sbjct: 145 ALYTVKALRWPTDIFFQRRYACRAMMLETVAAVPGMVGGVLLHLKSLRRFDHSGGWIKAL 204

Query: 187 LEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEE 246
           LEEAENERMHLMT +E+ +P+WYER LVL VQGVFFNA+F+ YL+SPK AHRVVGYLEEE
Sbjct: 205 LEEAENERMHLMTFMEVSQPRWYERALVLAVQGVFFNAYFLGYLISPKFAHRVVGYLEEE 264

Query: 247 AIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFAS 306
           AIHSYTE+LK+ID G+IENVPAPAIA+DYWRLP  +TL+DV+ V+RADEAHHRDVNHFAS
Sbjct: 265 AIHSYTEFLKEIDKGTIENVPAPAIALDYWRLPPGSTLRDVVMVVRADEAHHRDVNHFAS 324

Query: 307 DIQFQGKELRDAPAPLGYH 325
           D+ +QG +L+ APAPLGYH
Sbjct: 325 DVHYQGHQLKAAPAPLGYH 343


>gi|291245408|gb|ADD84881.1| mitochondrial AOX1A [Citrullus lanatus]
          Length = 315

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 200/286 (69%), Positives = 235/286 (82%), Gaps = 15/286 (5%)

Query: 34  VWDGDDMPLLGLRM--MVMMSSYSSSSESVPEKVK-----------EKGENGIVPSSYWG 80
           +W+     + G R    V +   ++++++ P+K +           EKGE GI  +SYWG
Sbjct: 26  IWNTRAPAIGGARFASTVTLGEKTTTTDANPKKAEKESSTGGDAGGEKGEKGI--ASYWG 83

Query: 81  ISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDL 140
           +   KIT+EDGS W WNCF PWETY+ADL+IDL KHHVPTTFLDK+AY TVK LR PTDL
Sbjct: 84  VEPSKITKEDGSEWKWNCFRPWETYKADLTIDLSKHHVPTTFLDKIAYWTVKSLRWPTDL 143

Query: 141 FFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTM 200
           FFQRRYGCRAMMLETVAAVPGMVGGMLLH KSLR+F+ SGGWIKALLEEAENERMHLMT 
Sbjct: 144 FFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLMTF 203

Query: 201 VELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDS 260
           +E+ KPKWYER LV+TVQGVFF+A+F+ YL+SPK AHR+VGYLEEEAIHSYTE+LK++D 
Sbjct: 204 MEVAKPKWYERALVITVQGVFFSAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDK 263

Query: 261 GSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFAS 306
           G+IENVPAPAIAIDYWRLP DATL+DV+ V+RADEAHHRDVNHFAS
Sbjct: 264 GNIENVPAPAIAIDYWRLPADATLRDVVMVVRADEAHHRDVNHFAS 309


>gi|18398395|ref|NP_564395.1| alternative oxidase 3 [Arabidopsis thaliana]
 gi|85681032|sp|Q8LEE7.2|AOX3_ARATH RecName: Full=Ubiquinol oxidase 3, mitochondrial; AltName:
           Full=Alternative oxidase 3; Flags: Precursor
 gi|8920609|gb|AAF81331.1|AC007767_11 Strong similarity to alternative oxidase from Populus tremula x
           Populus tremuloides gb|AJ271889. It contains an
           alternative oxidase domain PF|01786 [Arabidopsis
           thaliana]
 gi|115311485|gb|ABI93923.1| At1g32350 [Arabidopsis thaliana]
 gi|332193346|gb|AEE31467.1| alternative oxidase 3 [Arabidopsis thaliana]
          Length = 318

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 193/284 (67%), Positives = 235/284 (82%), Gaps = 1/284 (0%)

Query: 42  LLGLRMMVMMSSYSSSSESVPEKVKEKGENGIVPSSYWGISRPKITREDGSPWPWNCFMP 101
           L  +R++   +S   S  + PE    +  +G V S+YWGI   KIT+ DGS W WNCF P
Sbjct: 36  LPNVRLLSSDTSSPVSGNNQPEN-PIRTADGKVISTYWGIPPTKITKPDGSAWKWNCFQP 94

Query: 102 WETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPG 161
           W++Y+ D+SID+ KHH P+ F DK AY TV+ L+IP  LFFQR++ C AM+LETVAAVPG
Sbjct: 95  WDSYKPDVSIDVTKHHKPSNFTDKFAYWTVQTLKIPVQLFFQRKHMCHAMLLETVAAVPG 154

Query: 162 MVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVF 221
           MVGGMLLHLKSLR+F+HSGGWIKALLEEAENERMHLMT +EL +PKWYER +V TVQGVF
Sbjct: 155 MVGGMLLHLKSLRRFEHSGGWIKALLEEAENERMHLMTFIELSQPKWYERAIVFTVQGVF 214

Query: 222 FNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKD 281
           FNA+F+ Y++SPKLAHR+ GYLEEEA++SYTE+LKDID+G  EN PAPAIAIDYWRLPKD
Sbjct: 215 FNAYFLAYVISPKLAHRITGYLEEEAVNSYTEFLKDIDAGKFENSPAPAIAIDYWRLPKD 274

Query: 282 ATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           ATL+DV+ VIRADEAHHRD+NH+ASDIQF+G EL++APAP+GYH
Sbjct: 275 ATLRDVVYVIRADEAHHRDINHYASDIQFKGHELKEAPAPIGYH 318


>gi|308153042|dbj|BAJ22110.1| alternative oxidase 1c [Arum maculatum]
          Length = 343

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 191/259 (73%), Positives = 223/259 (86%)

Query: 67  EKGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKV 126
           E G       SYWG+   ++++EDGS W W CF PW+TY+ADLSIDL+KHH PTT LDK+
Sbjct: 85  EGGAEQKAVVSYWGVPPSRVSKEDGSEWRWTCFRPWDTYQADLSIDLQKHHAPTTILDKL 144

Query: 127 AYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKAL 186
           A  TVK LR PTD+FFQRRY CRAMMLETVAAVPGMVGG+LLHLKSLR+F+HSGGWIK L
Sbjct: 145 ALYTVKALRWPTDIFFQRRYACRAMMLETVAAVPGMVGGLLLHLKSLRRFEHSGGWIKTL 204

Query: 187 LEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEE 246
           LEEAENERMHLMT +E+ +P+WYER LVL VQGVFFNA+F+ YL+SPK AHRVVGYLEEE
Sbjct: 205 LEEAENERMHLMTFMEVSQPRWYERALVLAVQGVFFNAYFLGYLISPKFAHRVVGYLEEE 264

Query: 247 AIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFAS 306
           AIHSYTE+LK+ID G+IENVPAPAIA+DYWRLP  +TL+DV+ V+RADEAHHRDVNHFAS
Sbjct: 265 AIHSYTEFLKEIDKGTIENVPAPAIALDYWRLPPGSTLRDVVMVVRADEAHHRDVNHFAS 324

Query: 307 DIQFQGKELRDAPAPLGYH 325
           D+ +QG +L+ APAPLGYH
Sbjct: 325 DVHYQGHQLKAAPAPLGYH 343


>gi|116784421|gb|ABK23336.1| unknown [Picea sitchensis]
          Length = 400

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 195/292 (66%), Positives = 236/292 (80%), Gaps = 1/292 (0%)

Query: 33  NVWDGDDMPLLGLRMMVMMSSYSSSSESVPEKVKEKGENGIVPSSYWGISRPKITREDGS 92
           +V++  D  + G+    +    + ++ S P   K K E G+  SSYWG    +I+R+DGS
Sbjct: 109 DVFESADAGVTGIEKNNINEKKAETAISKPNTEKLK-EIGLPHSSYWGFYPTQISRQDGS 167

Query: 93  PWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMM 152
           PWPWN F PWETY  ++SIDLKKHHVP TF DK AY TV+ +RIP DLFF++RY  R MM
Sbjct: 168 PWPWNSFRPWETYTPNMSIDLKKHHVPKTFADKFAYWTVRAMRIPVDLFFKKRYDIRVMM 227

Query: 153 LETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERM 212
           LETVAAVPGMVGGMLLH KSLRKFQHS GWIKALLEEAENERMHLMT +E+ KP W+ER 
Sbjct: 228 LETVAAVPGMVGGMLLHCKSLRKFQHSAGWIKALLEEAENERMHLMTFMEVTKPNWFERA 287

Query: 213 LVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIA 272
           LV  VQGVFFN +F++Y++SPKLAHR+VGYLEEEA++SYTE+LK++D+G+I N PAPAIA
Sbjct: 288 LVFAVQGVFFNTYFLVYIISPKLAHRIVGYLEEEAVYSYTEFLKELDNGNIPNGPAPAIA 347

Query: 273 IDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGY 324
           IDYWRLPKD+TL+DV+ V+RADEAHHRDVNHFASDI FQG+ELR+A APL Y
Sbjct: 348 IDYWRLPKDSTLRDVVMVVRADEAHHRDVNHFASDIHFQGRELREAAAPLDY 399


>gi|302805258|ref|XP_002984380.1| hypothetical protein SELMODRAFT_180978 [Selaginella moellendorffii]
 gi|300147768|gb|EFJ14430.1| hypothetical protein SELMODRAFT_180978 [Selaginella moellendorffii]
          Length = 335

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 197/268 (73%), Positives = 223/268 (83%), Gaps = 2/268 (0%)

Query: 58  SESVPEKVKEKGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHH 117
            E  PEK  EK +  +V S YWGI   K+  E G PWPWN F P E Y  DL+IDLKKHH
Sbjct: 70  QEQPPEKKDEKKD--VVVSDYWGILPKKLVDEQGKPWPWNSFRPTEAYAPDLTIDLKKHH 127

Query: 118 VPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQ 177
            P + +DK+AY TVK LRIPTD+FFQRRYGCRAMMLETVA VPGMVGGMLLH KSLR+F+
Sbjct: 128 NPVSVVDKLAYWTVKTLRIPTDIFFQRRYGCRAMMLETVAGVPGMVGGMLLHCKSLRRFE 187

Query: 178 HSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAH 237
           HSGGWIKALLEEAENERMHLMT +E+V+PKWYER LV TVQGVFFNA+F+ Y+L P+LAH
Sbjct: 188 HSGGWIKALLEEAENERMHLMTFMEVVQPKWYERALVFTVQGVFFNAYFLCYVLFPRLAH 247

Query: 238 RVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAH 297
           R+VGYLEEEAIHSYT+YLK+ID G+I NVPAPAIAIDYWRLPKDA ++DV+ V+RADEAH
Sbjct: 248 RIVGYLEEEAIHSYTQYLKEIDKGTIPNVPAPAIAIDYWRLPKDAKMRDVVEVVRADEAH 307

Query: 298 HRDVNHFASDIQFQGKELRDAPAPLGYH 325
           HRDVNHFA+DI   GKELR A APL YH
Sbjct: 308 HRDVNHFAADIHKAGKELRSAAAPLSYH 335


>gi|224228409|dbj|BAH23672.1| alternative oxidase [Arum concinnatum]
          Length = 346

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 197/283 (69%), Positives = 232/283 (81%), Gaps = 12/283 (4%)

Query: 55  SSSSESVPEKVKEK-GENGIVPS-----------SYWGISRPKITREDGSPWPWNCFMPW 102
           S+ S+   +  KEK G  G VP            SYWG+   ++++EDGS W W CF PW
Sbjct: 64  STLSDPAQDGGKEKAGTAGEVPPGEGGAEQKAVVSYWGVPPSRVSKEDGSEWRWTCFRPW 123

Query: 103 ETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGM 162
           +TY+AD SIDL+KHH PTT LDK+A  TVK LR PTD+FFQRRY CRAMMLETVAAVPGM
Sbjct: 124 DTYQADFSIDLQKHHAPTTILDKLALYTVKALRWPTDIFFQRRYACRAMMLETVAAVPGM 183

Query: 163 VGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFF 222
           VGG+LLHLKSLR+F HSGGWIKALLEEAENERMHLMT +E+ +P+WYER LV+ VQGVFF
Sbjct: 184 VGGVLLHLKSLRRFDHSGGWIKALLEEAENERMHLMTFMEVAQPRWYERALVVAVQGVFF 243

Query: 223 NAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDA 282
           NA+F+ YL+SPK AHRVVGYLEEEAIHSYTE+LK+ID G+IENVPAPAIA+DYWRLP  +
Sbjct: 244 NAYFLGYLISPKFAHRVVGYLEEEAIHSYTEFLKEIDKGTIENVPAPAIALDYWRLPPGS 303

Query: 283 TLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           TL+DV+ V+RADEAHHRDVNHFASD+ +QG +L+ APAPLGYH
Sbjct: 304 TLRDVVMVVRADEAHHRDVNHFASDVHYQGHQLKAAPAPLGYH 346


>gi|224118198|ref|XP_002317755.1| predicted protein [Populus trichocarpa]
 gi|222858428|gb|EEE95975.1| predicted protein [Populus trichocarpa]
          Length = 253

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 188/249 (75%), Positives = 221/249 (88%)

Query: 77  SYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRI 136
           SYWG+   ++T+EDG+ W WN F PWETY ADLSI+L KHH P T LD++AY TVK LR 
Sbjct: 5   SYWGVPPSRVTKEDGTEWKWNSFRPWETYSADLSINLTKHHAPVTLLDRMAYWTVKSLRW 64

Query: 137 PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMH 196
           PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLH +SLR+F+HSGGWIKALLEEAENERMH
Sbjct: 65  PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCRSLRRFEHSGGWIKALLEEAENERMH 124

Query: 197 LMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLK 256
           LMT +E+  P+WYER LV TVQGVFFNA+F+ YL+SPK AHR+VGYLEEEAIHSYTE+LK
Sbjct: 125 LMTFMEVSNPRWYERALVFTVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLK 184

Query: 257 DIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELR 316
           ++D G+I+NVPAPAIAIDYWRLP ++TL+DV+  +RADEAHHRDVNHFASDI +QG+EL+
Sbjct: 185 ELDKGNIKNVPAPAIAIDYWRLPPNSTLRDVVVAVRADEAHHRDVNHFASDIHYQGRELK 244

Query: 317 DAPAPLGYH 325
           +APAP+GYH
Sbjct: 245 EAPAPIGYH 253


>gi|224228411|dbj|BAH23673.1| alternative oxidase [Arum concinnatum]
          Length = 346

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 197/283 (69%), Positives = 233/283 (82%), Gaps = 12/283 (4%)

Query: 55  SSSSESVPEKVKEK-GENGIVPS-----------SYWGISRPKITREDGSPWPWNCFMPW 102
           S+ S+   +  KEK G  G VP            SYWG+   +++++DGS W W CF PW
Sbjct: 64  STLSDPAQDGGKEKAGTAGKVPPGEGGAEQKAVVSYWGVPPSRVSKDDGSEWRWTCFRPW 123

Query: 103 ETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGM 162
           +TY+ADLSIDL+KHH PTT LDK+A  TVK LR PTD+FFQRRY CRAMMLETVAAVPGM
Sbjct: 124 DTYQADLSIDLQKHHAPTTILDKLALYTVKALRWPTDIFFQRRYACRAMMLETVAAVPGM 183

Query: 163 VGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFF 222
           VGG+LLHLKSLR+F HSGGWIKALLEEAENERMHLMT +E+ +P+WYER LV+ VQGVFF
Sbjct: 184 VGGVLLHLKSLRRFDHSGGWIKALLEEAENERMHLMTFMEVAQPRWYERALVVAVQGVFF 243

Query: 223 NAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDA 282
           NA+FV YLLSPK AHRVVGYLEEEAIHSYTE+LKDIDSG+I++ PAPAIA+DYWRLP+ +
Sbjct: 244 NAYFVGYLLSPKFAHRVVGYLEEEAIHSYTEFLKDIDSGAIQDTPAPAIALDYWRLPQGS 303

Query: 283 TLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           TL+DV+ V+RADEAHHRDVNHFASD+ +QG +L+ APA LGYH
Sbjct: 304 TLRDVVAVVRADEAHHRDVNHFASDVHYQGHQLKAAPALLGYH 346


>gi|226897261|dbj|BAH56639.1| alternative oxidase 1a [Nelumbo nucifera]
          Length = 344

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 194/275 (70%), Positives = 227/275 (82%), Gaps = 15/275 (5%)

Query: 66  KEKGENGIVPSS---------------YWGISRPKITREDGSPWPWNCFMPWETYRADLS 110
           KEK E G+  SS               YWG+    +T++DGS W WN F PWETY+ADLS
Sbjct: 70  KEKEEKGVRTSSTVGGANRPEDKMIVSYWGMPPANLTKKDGSEWKWNSFRPWETYKADLS 129

Query: 111 IDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHL 170
           IDLKKHH P TF+DK+AY TVK LR PTD+ FQ RYGCRAMMLETVAAVPGMVGGMLLHL
Sbjct: 130 IDLKKHHSPVTFMDKLAYWTVKALRYPTDILFQNRYGCRAMMLETVAAVPGMVGGMLLHL 189

Query: 171 KSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYL 230
           KSLR+F+HSGGWIK LLEEAENERMHLMT +E+ +PKWYER LV+ VQGVFFN +F+ YL
Sbjct: 190 KSLRRFEHSGGWIKTLLEEAENERMHLMTFMEVSQPKWYERALVVAVQGVFFNTYFLGYL 249

Query: 231 LSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITV 290
           +SP+ AHRVVGYLEEEAIHSYTE+LK++D G+I+NVPAPAIA+DYW+LP D+TL+DV+ V
Sbjct: 250 ISPRFAHRVVGYLEEEAIHSYTEFLKELDKGNIQNVPAPAIAVDYWQLPPDSTLRDVVMV 309

Query: 291 IRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           +RADEAHHRDVNHFASDI  QG EL+++PAPLGYH
Sbjct: 310 VRADEAHHRDVNHFASDIHDQGYELKESPAPLGYH 344


>gi|52421168|dbj|BAD51465.1| alternative oxidase [Dracunculus vulgaris]
          Length = 338

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 188/249 (75%), Positives = 222/249 (89%)

Query: 77  SYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRI 136
           SYWG+   ++++EDGS W W CF PW+TY+ADLSIDL+KHH PTT LDK+A  TVK LR 
Sbjct: 90  SYWGVPPSRVSKEDGSEWRWTCFRPWDTYQADLSIDLQKHHAPTTILDKLALCTVKALRW 149

Query: 137 PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMH 196
           PTD+FFQRRY CRAMMLETVAAVPGMVGG++LHLKSLR+F+HSGGWI+ALLEEAENERMH
Sbjct: 150 PTDIFFQRRYACRAMMLETVAAVPGMVGGVVLHLKSLRRFEHSGGWIRALLEEAENERMH 209

Query: 197 LMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLK 256
           LMT +E+ +P+WYER LVL VQGVFFNA+F+ YLLSPK AHRVVGYLEEEAIHSYTE+LK
Sbjct: 210 LMTFMEVAQPRWYERALVLAVQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAIHSYTEFLK 269

Query: 257 DIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELR 316
           DI+SG I++ PAPAIA+DYWRLP+ +TL+DV+TV+RADEAHHRDVNHFASD+ +QG EL+
Sbjct: 270 DIESGVIQDSPAPAIALDYWRLPQGSTLRDVVTVVRADEAHHRDVNHFASDVHYQGLELK 329

Query: 317 DAPAPLGYH 325
             PAPLGYH
Sbjct: 330 TTPAPLGYH 338


>gi|21553592|gb|AAM62685.1| oxidase, putative [Arabidopsis thaliana]
          Length = 318

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 192/284 (67%), Positives = 234/284 (82%), Gaps = 1/284 (0%)

Query: 42  LLGLRMMVMMSSYSSSSESVPEKVKEKGENGIVPSSYWGISRPKITREDGSPWPWNCFMP 101
           L  +R++   +S   S  + PE    +  +G V S+YWGI   KIT+ DGS W WNCF P
Sbjct: 36  LPNVRLLSSDTSSPVSGNNQPEN-PIRTADGKVISTYWGIPPTKITKPDGSAWKWNCFQP 94

Query: 102 WETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPG 161
           W++Y+ D+SID+ KHH P+ F DK AY TV+ L+IP  LFFQR++ C AM+LETVAAVPG
Sbjct: 95  WDSYKPDVSIDVTKHHKPSNFTDKFAYWTVQTLKIPVQLFFQRKHMCHAMLLETVAAVPG 154

Query: 162 MVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVF 221
           MVG MLLHLKSLR+F+HSGGWIKALLEEAENERMHLMT +EL +PKWYER +V TVQGVF
Sbjct: 155 MVGWMLLHLKSLRRFEHSGGWIKALLEEAENERMHLMTFIELSQPKWYERAIVFTVQGVF 214

Query: 222 FNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKD 281
           FNA+F+ Y++SPKLAHR+ GYLEEEA++SYTE+LKDID+G  EN PAPAIAIDYWRLPKD
Sbjct: 215 FNAYFLAYVISPKLAHRITGYLEEEAVNSYTEFLKDIDAGKFENSPAPAIAIDYWRLPKD 274

Query: 282 ATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           ATL+DV+ VIRADEAHHRD+NH+ASDIQF+G EL++APAP+GYH
Sbjct: 275 ATLRDVVYVIRADEAHHRDINHYASDIQFKGHELKEAPAPIGYH 318


>gi|302782061|ref|XP_002972804.1| hypothetical protein SELMODRAFT_232012 [Selaginella moellendorffii]
 gi|300159405|gb|EFJ26025.1| hypothetical protein SELMODRAFT_232012 [Selaginella moellendorffii]
          Length = 302

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 196/264 (74%), Positives = 221/264 (83%), Gaps = 2/264 (0%)

Query: 62  PEKVKEKGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTT 121
           PEK  EK +  +V S YWGI   K+  E G PWPWN F P E Y  DL+IDLKKHH P +
Sbjct: 41  PEKKDEKKD--VVISDYWGILPKKLVDEQGKPWPWNSFRPTEAYAPDLTIDLKKHHNPVS 98

Query: 122 FLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGG 181
            +DK+AY TVK LRIPTD+FFQRRYGCRAMMLETVA VPGMVGGMLLH KSLR+F+HSGG
Sbjct: 99  VVDKLAYWTVKTLRIPTDIFFQRRYGCRAMMLETVAGVPGMVGGMLLHCKSLRRFEHSGG 158

Query: 182 WIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVG 241
           WIKALLEEAENERMHLMT +E+V+PKWYER LV TVQGVFFNA+F+ Y+L P+LAHR+VG
Sbjct: 159 WIKALLEEAENERMHLMTFMEVVQPKWYERALVFTVQGVFFNAYFLCYVLFPRLAHRIVG 218

Query: 242 YLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDV 301
           YLEEEAIHSYTEYLK+ID G+I N PAPAIAIDYWRLPKDA ++DV+ V+RADEAHHRDV
Sbjct: 219 YLEEEAIHSYTEYLKEIDKGTIPNAPAPAIAIDYWRLPKDAKMRDVVEVVRADEAHHRDV 278

Query: 302 NHFASDIQFQGKELRDAPAPLGYH 325
           NHFA+DI   GKELR A APL YH
Sbjct: 279 NHFAADIHKAGKELRSAAAPLSYH 302


>gi|350539127|ref|NP_001234120.1| alternative oxidase 1b [Solanum lycopersicum]
 gi|29465624|gb|AAK58483.1| alternative oxidase 1b [Solanum lycopersicum]
          Length = 318

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 196/300 (65%), Positives = 234/300 (78%), Gaps = 11/300 (3%)

Query: 37  GDDMPLLGLRMMVMMSSYSSSSESVPEK-----------VKEKGENGIVPSSYWGISRPK 85
           G+ +P  G+  +   S+ ++SS++  E+               G+      SYWG+  PK
Sbjct: 19  GEFLPRGGMVQIRHWSNMNTSSKTKEEQKTHNQPSHTDATNAAGDKAKKIVSYWGVDPPK 78

Query: 86  ITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRR 145
           I++EDG+PW WN F PWETY AD+SID++KHH+PT F+DK AY TV+ L+ PT LFFQRR
Sbjct: 79  ISKEDGTPWKWNSFRPWETYSADISIDVEKHHMPTNFMDKFAYWTVQSLKYPTYLFFQRR 138

Query: 146 YGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVK 205
           + C AM+LETVAAVPGMVGGMLLH KSLR+F+HSGGWIKALLEEAENERMHLMT +EL  
Sbjct: 139 HMCHAMLLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFIELSN 198

Query: 206 PKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIEN 265
           PKWYER LV  VQGVF NA+F+ YL SPKLAHR+VGYLEEEA++SYTE+L DI+ G  EN
Sbjct: 199 PKWYERALVFAVQGVFVNAYFIAYLASPKLAHRIVGYLEEEAVNSYTEFLIDIEKGLFEN 258

Query: 266 VPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
            PAPAIAIDYWRLP DATLKDV+TVIRADEAHHRD+NHFASDIQ QG EL+  PAP+GYH
Sbjct: 259 SPAPAIAIDYWRLPADATLKDVVTVIRADEAHHRDLNHFASDIQCQGHELKGYPAPIGYH 318


>gi|357137162|ref|XP_003570170.1| PREDICTED: alternative oxidase 1a, mitochondrial-like [Brachypodium
           distachyon]
          Length = 343

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 193/258 (74%), Positives = 220/258 (85%)

Query: 68  KGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVA 127
           K  +  V SSYWGI   K+  +DG+ W W+CF PWE Y +D +IDLKKHH P   LDK+A
Sbjct: 86  KDGDKTVVSSYWGIVPAKLVNKDGAEWKWSCFRPWEAYTSDTTIDLKKHHEPKVLLDKIA 145

Query: 128 YRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALL 187
           Y TVK LR+PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLHL+SLR+F+HSGGWI+ALL
Sbjct: 146 YWTVKSLRVPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEHSGGWIRALL 205

Query: 188 EEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEA 247
           EEAENERMHLMT +E+  PKWYER LVL VQGVFFNA+F+ YLLSPK AHRVVGYLEEEA
Sbjct: 206 EEAENERMHLMTFMEVAGPKWYERALVLAVQGVFFNAYFLGYLLSPKFAHRVVGYLEEEA 265

Query: 248 IHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASD 307
           +HSYTE+L+DI++G I+NVPAP IAIDYWRLP DATL+DV+ V+RADEAHHRDVNHFASD
Sbjct: 266 VHSYTEFLRDIEAGKIDNVPAPRIAIDYWRLPPDATLRDVVVVVRADEAHHRDVNHFASD 325

Query: 308 IQFQGKELRDAPAPLGYH 325
           I FQG EL   PAPLGYH
Sbjct: 326 IHFQGLELNKTPAPLGYH 343


>gi|242077038|ref|XP_002448455.1| hypothetical protein SORBIDRAFT_06g027430 [Sorghum bicolor]
 gi|241939638|gb|EES12783.1| hypothetical protein SORBIDRAFT_06g027430 [Sorghum bicolor]
          Length = 332

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 187/263 (71%), Positives = 218/263 (82%)

Query: 63  EKVKEKGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTF 122
           E+    G++     SYWGI  PK+ +EDG+ W W  F PW+ Y +D SID+KKHH PTT 
Sbjct: 70  EEAAGGGQSKKAIVSYWGIEAPKLVKEDGTEWKWTSFRPWDAYTSDTSIDVKKHHAPTTL 129

Query: 123 LDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGW 182
            DK AY  VK LR+P DLFFQRR+   A++LETVAAVPGMVGGMLLHL+SLR+F+HSGGW
Sbjct: 130 PDKAAYLIVKSLRVPMDLFFQRRHASHALLLETVAAVPGMVGGMLLHLRSLRRFEHSGGW 189

Query: 183 IKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGY 242
           I+ALLEEAENERMHLMT +E+ +PKW+ER LVL  QGVFFNA+FV YLLSPK AHRVVGY
Sbjct: 190 IRALLEEAENERMHLMTFLEVTQPKWWERALVLATQGVFFNAYFVGYLLSPKFAHRVVGY 249

Query: 243 LEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVN 302
           LEEEA++SYTEYLKD+++G IEN PAPAIAIDYWRLP DA LKDV+TV+RADEAHHRDVN
Sbjct: 250 LEEEAVYSYTEYLKDLEAGIIENTPAPAIAIDYWRLPADAKLKDVVTVVRADEAHHRDVN 309

Query: 303 HFASDIQFQGKELRDAPAPLGYH 325
           HFASDI +QG +LRD PAPLGYH
Sbjct: 310 HFASDIHYQGMKLRDTPAPLGYH 332


>gi|19912727|dbj|BAB88646.1| alternative oxidase [Triticum aestivum]
          Length = 347

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 187/250 (74%), Positives = 214/250 (85%)

Query: 76  SSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLR 135
           SSYWGI   K+  +DG+ W W+CF PWE Y +D +IDL KHH P   LDK+AY TVK LR
Sbjct: 98  SSYWGIVPAKLVNKDGAEWKWSCFRPWEAYTSDTTIDLSKHHKPKVLLDKIAYWTVKSLR 157

Query: 136 IPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERM 195
           +PTD+FFQRRYGCRAMMLETVAAVPGMV GMLLHL+SLR+F+ SGGWI+ALLEEAENERM
Sbjct: 158 VPTDIFFQRRYGCRAMMLETVAAVPGMVDGMLLHLRSLRRFEQSGGWIRALLEEAENERM 217

Query: 196 HLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYL 255
           HLMT +E+  PKWYER LVL VQGVFFNA+F+ Y++SPK AHRVVGYLEEEAIHSYTE+L
Sbjct: 218 HLMTFMEVANPKWYERALVLAVQGVFFNAYFLGYIVSPKFAHRVVGYLEEEAIHSYTEFL 277

Query: 256 KDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKEL 315
           +D+++G IENVPAP IAIDYWRLP DA LKDV+TV+RADEAHHRDVNHFA+DI FQG EL
Sbjct: 278 RDLEAGRIENVPAPRIAIDYWRLPADARLKDVVTVVRADEAHHRDVNHFAADIHFQGLEL 337

Query: 316 RDAPAPLGYH 325
              PAPLGYH
Sbjct: 338 NKTPAPLGYH 347


>gi|147782375|emb|CAN70584.1| hypothetical protein VITISV_001908 [Vitis vinifera]
          Length = 285

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 184/266 (69%), Positives = 222/266 (83%), Gaps = 1/266 (0%)

Query: 60  SVPEKVKEKGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVP 119
            VP+   E GE   +  SYWG+    +T+EDGSPW W+CF PWETY+AD+SID++KHH P
Sbjct: 21  QVPKTGSENGEQKAI-VSYWGVPPANLTKEDGSPWKWHCFRPWETYKADISIDVEKHHKP 79

Query: 120 TTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHS 179
             F+DK AY TV+ L+IPT +FFQR++ C AM+LETVAAVPGMVGGMLLH +S R+F+ S
Sbjct: 80  VKFMDKFAYWTVQALKIPTHMFFQRKHMCHAMLLETVAAVPGMVGGMLLHCQSXRRFEQS 139

Query: 180 GGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRV 239
           GGWIKALLEEAENERMHLMT +EL KP+WYER JV  VQGVFFNA+F+ YL SPK+AHR+
Sbjct: 140 GGWIKALLEEAENERMHLMTFIELAKPQWYERAJVFAVQGVFFNAYFLTYLASPKVAHRI 199

Query: 240 VGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHR 299
            GYLEEEA+ SYTE+LKD+D+GS ENVPAPAIAIDYWRLP ++TL+DV+ VIRADEAHHR
Sbjct: 200 TGYLEEEAVRSYTEFLKDLDNGSFENVPAPAIAIDYWRLPAESTLRDVVEVIRADEAHHR 259

Query: 300 DVNHFASDIQFQGKELRDAPAPLGYH 325
           DVNH+ASDIQ QG + +D PAPLGYH
Sbjct: 260 DVNHYASDIQCQGHQFKDVPAPLGYH 285


>gi|51860701|gb|AAU11470.1| mitochondrial alternative oxidase 1d [Saccharum officinarum]
          Length = 286

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 188/263 (71%), Positives = 219/263 (83%), Gaps = 3/263 (1%)

Query: 66  KEKGENGIVPS---SYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTF 122
           +E+  NG       SYWGI  PK+ +EDG+ W W CF PW+ Y +D SID+KKHH PTT 
Sbjct: 24  REEAANGQSKKAIVSYWGIEPPKLVKEDGTEWKWPCFRPWDAYTSDTSIDVKKHHAPTTL 83

Query: 123 LDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGW 182
            DK AY  VK LR+P DLFFQRR+   A++LETVAAVPGMVGGMLLHL+SLR+F+HSGGW
Sbjct: 84  PDKAAYLIVKSLRVPMDLFFQRRHASHALLLETVAAVPGMVGGMLLHLRSLRRFEHSGGW 143

Query: 183 IKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGY 242
           ++ALLEEAENERMHLMT +E+ +P+W+ER LVL  QGVFFNA+FV YLLSPK AHRVVGY
Sbjct: 144 VRALLEEAENERMHLMTFLEVTQPRWWERALVLATQGVFFNAYFVGYLLSPKFAHRVVGY 203

Query: 243 LEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVN 302
           LEEEA+HSYTEYLKD+++G IEN PAPAIAIDYWRLP DA LKDV+TV+RADEAHHRDVN
Sbjct: 204 LEEEAVHSYTEYLKDLEAGIIENSPAPAIAIDYWRLPADAKLKDVVTVVRADEAHHRDVN 263

Query: 303 HFASDIQFQGKELRDAPAPLGYH 325
           HFASDI +QG +LRD PAPLGYH
Sbjct: 264 HFASDIHYQGMKLRDTPAPLGYH 286


>gi|225427480|ref|XP_002262982.1| PREDICTED: alternative oxidase 3, mitochondrial [Vitis vinifera]
 gi|296088482|emb|CBI37473.3| unnamed protein product [Vitis vinifera]
          Length = 322

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 184/266 (69%), Positives = 222/266 (83%), Gaps = 1/266 (0%)

Query: 60  SVPEKVKEKGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVP 119
            VP+   E GE   +  SYWG+    +T+EDGSPW W+CF PWETY+AD+SID++KHH P
Sbjct: 58  QVPKTGSENGEQKAI-VSYWGVPPANLTKEDGSPWKWHCFRPWETYKADISIDVEKHHKP 116

Query: 120 TTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHS 179
             F+DK AY TV+ L+IPT +FFQR++ C AM+LETVAAVPGMVGGMLLH +S R+F+ S
Sbjct: 117 VKFMDKFAYWTVQALKIPTHMFFQRKHMCHAMLLETVAAVPGMVGGMLLHCQSPRRFEQS 176

Query: 180 GGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRV 239
           GGWIKALLEEAENERMHLMT +EL KP+WYER +V  VQGVFFNA+F+ YL SPK+AHR+
Sbjct: 177 GGWIKALLEEAENERMHLMTFIELAKPQWYERAIVFAVQGVFFNAYFLTYLASPKVAHRI 236

Query: 240 VGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHR 299
            GYLEEEA+ SYTE+LKD+D+GS ENVPAPAIAIDYWRLP ++TL+DV+ VIRADEAHHR
Sbjct: 237 TGYLEEEAVRSYTEFLKDLDNGSFENVPAPAIAIDYWRLPAESTLRDVVEVIRADEAHHR 296

Query: 300 DVNHFASDIQFQGKELRDAPAPLGYH 325
           DVNH+ASDIQ QG + +D PAPLGYH
Sbjct: 297 DVNHYASDIQCQGHQFKDVPAPLGYH 322


>gi|31322552|gb|AAP35170.1| alternative oxidase [Cucumis sativus]
          Length = 214

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 194/214 (90%), Positives = 205/214 (95%)

Query: 112 DLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLK 171
           DL KHH P TFLDKVAYR VKLLRIPTD+FFQRRYGCRA+MLETVAAVPGMVGGMLLHLK
Sbjct: 1   DLGKHHQPKTFLDKVAYRVVKLLRIPTDIFFQRRYGCRAVMLETVAAVPGMVGGMLLHLK 60

Query: 172 SLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLL 231
           SLRKFQHSGGWIKALLEEAENERMHLMTM+ELV+PKWYER+LV+TVQGVFFNAFFVLYL+
Sbjct: 61  SLRKFQHSGGWIKALLEEAENERMHLMTMIELVQPKWYERLLVITVQGVFFNAFFVLYLM 120

Query: 232 SPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVI 291
           SPKLAHR+VGYLEEEAIHSYTEYLKDI+ G IENVPAPAIAIDYWRLPKDA LKDVITVI
Sbjct: 121 SPKLAHRIVGYLEEEAIHSYTEYLKDINEGKIENVPAPAIAIDYWRLPKDARLKDVITVI 180

Query: 292 RADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           RADEAHHRDVNHFASDI FQGKELR++ APLGYH
Sbjct: 181 RADEAHHRDVNHFASDIHFQGKELRESAAPLGYH 214


>gi|6967043|emb|CAB72441.1| alternative oxidase [Populus tremula x Populus tremuloides]
          Length = 294

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 186/256 (72%), Positives = 222/256 (86%)

Query: 70  ENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYR 129
           E+G    SYWG+S PKIT+EDG+ W WNCF PWE+Y+ D+SID+KKHH P T +DK AY 
Sbjct: 39  EDGKAIVSYWGVSPPKITKEDGTAWKWNCFRPWESYKPDISIDVKKHHKPGTTMDKFAYW 98

Query: 130 TVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEE 189
           TV++L+ PT LFFQRR+ C AM+LETVAAVPGMVGGMLLH KSLR+F+ SGGWIKALLEE
Sbjct: 99  TVQVLKYPTYLFFQRRHMCHAMLLETVAAVPGMVGGMLLHFKSLRRFEQSGGWIKALLEE 158

Query: 190 AENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIH 249
           AENERMHLMT VE+ KP+WYER LV  VQGVFFNA+F+ YL SPKLAHR+VGYLEEEA++
Sbjct: 159 AENERMHLMTFVEIAKPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVN 218

Query: 250 SYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQ 309
           SY+E+L+D+D+ S ENVPAPAIAIDYWRLP ++TL+DV+ VIRADEAHHRD+NH+ASDIQ
Sbjct: 219 SYSEFLEDLDNCSFENVPAPAIAIDYWRLPPNSTLRDVVFVIRADEAHHRDLNHYASDIQ 278

Query: 310 FQGKELRDAPAPLGYH 325
            QG+ELR  PAP+GYH
Sbjct: 279 CQGQELRYTPAPIGYH 294


>gi|414585624|tpg|DAA36195.1| TPA: alternative oxidase [Zea mays]
          Length = 332

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 184/263 (69%), Positives = 217/263 (82%)

Query: 63  EKVKEKGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTF 122
           E+    G++     SYWGI  PK+ +EDG+ W W  F PW+ Y +D SID+ KHH PTT 
Sbjct: 70  EEEAAGGQSKKAVVSYWGIDTPKLVKEDGTEWKWTSFRPWDAYTSDTSIDIGKHHAPTTL 129

Query: 123 LDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGW 182
            DK AY  VK LR+P DLFFQRR+   A++LETVAAVPGMVGGMLLHL+SLR+F+HSGGW
Sbjct: 130 PDKAAYLIVKSLRVPMDLFFQRRHASHALLLETVAAVPGMVGGMLLHLRSLRRFEHSGGW 189

Query: 183 IKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGY 242
           I+ALLEEAENERMHLMT +E+ +P+W+ER LVLT QGVFFNA+FV YLLSPK AHRVVGY
Sbjct: 190 IRALLEEAENERMHLMTFLEVTQPRWWERALVLTAQGVFFNAYFVGYLLSPKFAHRVVGY 249

Query: 243 LEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVN 302
           LEEEA+HSYTEYLKD+++G I+N PAPAIAIDYWRLP DA LKDV+TV+RADEAHHRDVN
Sbjct: 250 LEEEAVHSYTEYLKDLEAGIIDNTPAPAIAIDYWRLPADAKLKDVVTVVRADEAHHRDVN 309

Query: 303 HFASDIQFQGKELRDAPAPLGYH 325
           HFASDI +QG +L+D PAPL YH
Sbjct: 310 HFASDIHYQGMKLKDTPAPLSYH 332


>gi|162463026|ref|NP_001105663.1| alternative oxidase AOX3 precursor [Zea mays]
 gi|25989201|gb|AAL27797.1| alternative oxidase AOX3 precursor [Zea mays]
          Length = 332

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 183/263 (69%), Positives = 217/263 (82%)

Query: 63  EKVKEKGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTF 122
           E+    G++     SYWGI  PK+ +EDG+ W W  F PW+ Y +D SID+ KHH PTT 
Sbjct: 70  EEEAAGGQSKKAVVSYWGIDTPKLVKEDGTEWKWTSFRPWDAYTSDTSIDIGKHHAPTTL 129

Query: 123 LDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGW 182
            DK AY  VK LR+P DLFFQRR+   A++LETVAAVPGMVGGMLLHL+SLR+F+HSGGW
Sbjct: 130 PDKAAYLIVKSLRVPMDLFFQRRHASHALLLETVAAVPGMVGGMLLHLRSLRRFEHSGGW 189

Query: 183 IKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGY 242
           I+ALLEEAENERMHLMT +E+ +P+W+ER LVLT QGVFFNA+F+ YLLSPK AHRVVGY
Sbjct: 190 IRALLEEAENERMHLMTFLEVTQPRWWERALVLTAQGVFFNAYFLGYLLSPKFAHRVVGY 249

Query: 243 LEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVN 302
           LEEEA+HSYTEYLKD+++G I+N PAPAIAIDYWRLP DA LKDV+TV+RADEAHHRDVN
Sbjct: 250 LEEEAVHSYTEYLKDLEAGIIDNTPAPAIAIDYWRLPADAKLKDVVTVVRADEAHHRDVN 309

Query: 303 HFASDIQFQGKELRDAPAPLGYH 325
           HFASDI +QG +L+D PAPL YH
Sbjct: 310 HFASDIHYQGMKLKDTPAPLSYH 332


>gi|224074535|ref|XP_002304386.1| predicted protein [Populus trichocarpa]
 gi|222841818|gb|EEE79365.1| predicted protein [Populus trichocarpa]
          Length = 253

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 181/249 (72%), Positives = 219/249 (87%)

Query: 77  SYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRI 136
           SYWG++ PKIT+EDG+ W WNCF PWE+Y+ D+SID+KKHH P T +DK AY TV++L+ 
Sbjct: 5   SYWGVTPPKITKEDGTAWKWNCFRPWESYKPDISIDVKKHHKPGTTMDKFAYWTVQVLKY 64

Query: 137 PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMH 196
           PT LFFQRR+ C AM+LETVAAVPGMVGGMLLH KSLR+F+ SGGWIKALLEEAENERMH
Sbjct: 65  PTYLFFQRRHMCHAMLLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMH 124

Query: 197 LMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLK 256
           LMT VE+ KP+WYER LV  VQG FFNA+F+ YL SPKLAHR+VGYLEEEA++SY+E+L+
Sbjct: 125 LMTFVEIAKPQWYERALVFAVQGAFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYSEFLE 184

Query: 257 DIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELR 316
           D+D+G+ ENVPAPAIAIDYWRLP ++TL+DV+ VIRADEAHHRD+NH+ASDIQ QG+EL+
Sbjct: 185 DLDNGNFENVPAPAIAIDYWRLPPNSTLRDVVFVIRADEAHHRDLNHYASDIQCQGQELK 244

Query: 317 DAPAPLGYH 325
             PAP+GYH
Sbjct: 245 HTPAPIGYH 253


>gi|51860699|gb|AAU11469.1| mitochondrial alternative oxidase 1c [Saccharum officinarum]
          Length = 239

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 185/237 (78%), Positives = 211/237 (89%)

Query: 89  EDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGC 148
           +DG  W W+CF PWE Y+ D SIDL +HH P   LDK+AY TVKLLR+PTD+FFQRRYGC
Sbjct: 3   KDGVEWRWSCFRPWEAYKPDTSIDLTRHHEPKVLLDKIAYWTVKLLRVPTDIFFQRRYGC 62

Query: 149 RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKW 208
           RAMMLETVAAVPGMVGGMLLHL+SLR+F+ SGGWI+ALLEEAENERMHLMT +E+ KPKW
Sbjct: 63  RAMMLETVAAVPGMVGGMLLHLRSLRRFEPSGGWIRALLEEAENERMHLMTFMEVAKPKW 122

Query: 209 YERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPA 268
           YER LVL VQGVFFNA+F+ YL+SPK AHRVVGYLEEEAIHSYTEYLKD+++G IENVPA
Sbjct: 123 YERALVLAVQGVFFNAYFLGYLISPKFAHRVVGYLEEEAIHSYTEYLKDLEAGKIENVPA 182

Query: 269 PAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           PAIAIDYW+LP DATLKDV+ V+R+DEAHHRDVNHFASDI FQG +L++ PAPLGYH
Sbjct: 183 PAIAIDYWQLPADATLKDVVIVVRSDEAHHRDVNHFASDIHFQGMQLKETPAPLGYH 239


>gi|111607217|dbj|BAF02775.1| alternative oxidase [Lactuca sativa]
          Length = 228

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 185/228 (81%), Positives = 209/228 (91%)

Query: 98  CFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVA 157
           CF PWETY+ADLSIDLKKHH PTTFLDK+AY TVK LR PTD+FFQ+RYGCRAMMLETVA
Sbjct: 1   CFRPWETYQADLSIDLKKHHTPTTFLDKLAYWTVKSLRFPTDVFFQKRYGCRAMMLETVA 60

Query: 158 AVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTV 217
           AVPGMVGGMLLH KSLR+F+ SGGWIKALLEEAENERMHLMT +E+ KP+WYER LV TV
Sbjct: 61  AVPGMVGGMLLHCKSLRRFEPSGGWIKALLEEAENERMHLMTFMEVSKPRWYERALVFTV 120

Query: 218 QGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWR 277
           QGVFFNA+F+ YL SPKLAHR+VGYLEEEAIHSYTE+LK++D G+IENV APAIAIDYWR
Sbjct: 121 QGVFFNAYFLAYLASPKLAHRIVGYLEEEAIHSYTEFLKELDKGTIENVKAPAIAIDYWR 180

Query: 278 LPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           LP D+TL+DV+ V+RADEAHHRDVNHFASDI +QG EL+D+PAP+GYH
Sbjct: 181 LPADSTLRDVVMVVRADEAHHRDVNHFASDIHYQGLELKDSPAPIGYH 228


>gi|18176467|gb|AAL60049.1| At1g32350/F5D14.4 [Arabidopsis thaliana]
          Length = 317

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 187/284 (65%), Positives = 231/284 (81%), Gaps = 2/284 (0%)

Query: 42  LLGLRMMVMMSSYSSSSESVPEKVKEKGENGIVPSSYWGISRPKITREDGSPWPWNCFMP 101
           L  +R++   +S   S  + PE    +  +G V S+YWGI   KIT+ DGS W WNCF P
Sbjct: 36  LPNVRLLSSDTSSPVSGNNQPEN-PIRTADGKVISTYWGIPPTKITKPDGSAWKWNCFQP 94

Query: 102 WETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPG 161
           W++Y+ D+SID+ KHH P+ F DK AY TV+ L+IP  LFFQR++ C AM+LETVA VPG
Sbjct: 95  WDSYKPDVSIDVTKHHKPSNFTDKFAYWTVQTLKIPVQLFFQRKHMCHAMLLETVA-VPG 153

Query: 162 MVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVF 221
           MVGGMLLHLKSLR+F+HSGGWIKALLEEAENERMHLMT +EL +PKWYER +V TVQGVF
Sbjct: 154 MVGGMLLHLKSLRRFEHSGGWIKALLEEAENERMHLMTFIELSQPKWYERAIVFTVQGVF 213

Query: 222 FNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKD 281
           FNA+F+ Y++SPKLAHR+ GYLEEEA++SYTE+LKDID+G  EN PAPAIA+DYWR PKD
Sbjct: 214 FNAYFLAYVISPKLAHRITGYLEEEAVNSYTEFLKDIDAGKFENSPAPAIAMDYWRFPKD 273

Query: 282 ATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           ATL+DV+ VIRA+EA  RD+NH+ASDIQF+G EL++APAP+GYH
Sbjct: 274 ATLRDVVYVIRAEEAPPRDINHYASDIQFKGHELKEAPAPIGYH 317


>gi|242077036|ref|XP_002448454.1| hypothetical protein SORBIDRAFT_06g027420 [Sorghum bicolor]
 gi|241939637|gb|EES12782.1| hypothetical protein SORBIDRAFT_06g027420 [Sorghum bicolor]
          Length = 314

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 190/278 (68%), Positives = 223/278 (80%), Gaps = 3/278 (1%)

Query: 51  MSSYSSSSES--VPEKVKEKGENGI-VPSSYWGISRPKITREDGSPWPWNCFMPWETYRA 107
           MSS +++ E    PE    +G++ I    SYWGI   K+ +EDG+ W W CF PW+TYRA
Sbjct: 37  MSSTAAAPEQRQKPEAPAPEGQDKIKAVVSYWGIQPRKLVKEDGTEWRWFCFRPWDTYRA 96

Query: 108 DLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGML 167
           D SID+KKHH P    DK+AY  VK L +P  LFFQRR+   A++LETVAAVPGMVGGML
Sbjct: 97  DTSIDMKKHHEPKALPDKLAYWLVKSLIVPKQLFFQRRHASHALLLETVAAVPGMVGGML 156

Query: 168 LHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFV 227
           LHL SLR+F+HSGGWI+ALLEEAENERMHLMT +E+ +PKW+ER LVL  QGVFFNA+FV
Sbjct: 157 LHLGSLRRFEHSGGWIRALLEEAENERMHLMTFLEVAQPKWWERALVLAAQGVFFNAYFV 216

Query: 228 LYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDV 287
            YL SPK AHR VGYLEEEA+HSYTEYLKD+++G IEN PAPAIAIDYWRLP DA LKDV
Sbjct: 217 AYLASPKFAHRFVGYLEEEAVHSYTEYLKDLEAGVIENTPAPAIAIDYWRLPADAKLKDV 276

Query: 288 ITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           +TV+RADEAHHRDVNHFASDI +QG +L+D PAPLGYH
Sbjct: 277 VTVVRADEAHHRDVNHFASDIHYQGMKLKDTPAPLGYH 314


>gi|50251730|dbj|BAD27650.1| putative alternative oxidase 1 [Oryza sativa Japonica Group]
          Length = 339

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 179/259 (69%), Positives = 218/259 (84%)

Query: 67  EKGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKV 126
           +K E+    +SYWG++  ++ +EDG+ W W+CF PW+TY AD++IDL KHH P T  DKV
Sbjct: 81  KKEESEKEAASYWGVAPTRLVKEDGTVWKWSCFRPWDTYEADVAIDLTKHHNPATLGDKV 140

Query: 127 AYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKAL 186
           A  TVK LR P DLFFQRRYGCRAMMLETVAAVPGMV G +LHL+SLR+F+HSGGWI+AL
Sbjct: 141 ARWTVKSLRWPVDLFFQRRYGCRAMMLETVAAVPGMVAGAVLHLRSLRRFEHSGGWIRAL 200

Query: 187 LEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEE 246
           LEEAENERMHLMT +E+ +P+WYER LV+ VQG FFNA+   YLLSP+ AHR+VGYLEEE
Sbjct: 201 LEEAENERMHLMTFMEVSQPRWYERALVVAVQGAFFNAYLASYLLSPRFAHRIVGYLEEE 260

Query: 247 AIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFAS 306
           A+HSYTE+L+D+D+G I++VPAPAIAIDYWRLP DATL+DV+ V+RADEAHHRDVNH+AS
Sbjct: 261 AVHSYTEFLRDLDAGKIDDVPAPAIAIDYWRLPADATLRDVVMVVRADEAHHRDVNHYAS 320

Query: 307 DIQFQGKELRDAPAPLGYH 325
           DI +QG  LR+  APLGYH
Sbjct: 321 DIHYQGHALREVAAPLGYH 339


>gi|125539183|gb|EAY85578.1| hypothetical protein OsI_06950 [Oryza sativa Indica Group]
          Length = 339

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 179/259 (69%), Positives = 218/259 (84%)

Query: 67  EKGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKV 126
           +K E+    +SYWG++  ++ +EDG+ W W+CF PW+TY AD++IDL KHH P T  DKV
Sbjct: 81  KKEESEKEAASYWGVAPTRLVKEDGTVWKWSCFRPWDTYEADVAIDLTKHHNPATLGDKV 140

Query: 127 AYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKAL 186
           A  TVK LR P DLFFQRRYGCRAMMLETVAAVPGMV G +LHL+SLR+F+HSGGWI+AL
Sbjct: 141 ARWTVKSLRWPVDLFFQRRYGCRAMMLETVAAVPGMVAGAVLHLRSLRRFEHSGGWIRAL 200

Query: 187 LEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEE 246
           LEEAENERMHLMT +E+ +P+WYER LV+ VQG FFNA+   YLLSP+ AHR+VGYLEEE
Sbjct: 201 LEEAENERMHLMTFMEVSQPRWYERALVVAVQGAFFNAYLASYLLSPRFAHRIVGYLEEE 260

Query: 247 AIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFAS 306
           A+HSYTE+L+D+D+G I++VPAPAIAIDYWRLP DATL+DV+ V+RADEAHHRDVNH+AS
Sbjct: 261 AVHSYTEFLRDLDAGKIDDVPAPAIAIDYWRLPADATLRDVVMVVRADEAHHRDVNHYAS 320

Query: 307 DIQFQGKELRDAPAPLGYH 325
           DI +QG  LR+  APLGYH
Sbjct: 321 DIHYQGHALREVAAPLGYH 339


>gi|302800473|ref|XP_002981994.1| hypothetical protein SELMODRAFT_421378 [Selaginella moellendorffii]
 gi|300150436|gb|EFJ17087.1| hypothetical protein SELMODRAFT_421378 [Selaginella moellendorffii]
          Length = 335

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 183/269 (68%), Positives = 219/269 (81%)

Query: 57  SSESVPEKVKEKGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKH 116
           +S++ P   +    +    S+YWGI   K  REDG+PWPWNCF P ++Y +D SID+KKH
Sbjct: 67  NSQNSPTDHENHKNDDQQFSNYWGIITKKTLREDGTPWPWNCFKPSDSYVSDTSIDVKKH 126

Query: 117 HVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKF 176
           H+P   +DKVA +TVK LR  +DLFFQ R+GC A++LETVAAVPGMVGGMLLH KSLRKF
Sbjct: 127 HIPDAVVDKVALKTVKFLRALSDLFFQERHGCHAVLLETVAAVPGMVGGMLLHCKSLRKF 186

Query: 177 QHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLA 236
           +HSGGWIKALLEEAENERMHLMT +E+ +PKWYER LVL VQGVFFN +F LYL+ P+LA
Sbjct: 187 EHSGGWIKALLEEAENERMHLMTFMEVFQPKWYERALVLAVQGVFFNGYFALYLIFPRLA 246

Query: 237 HRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEA 296
           HR VGYLEEEA+ SYTE+L  +D GS+ N PAPAIAIDYWRLP DATL+DV+ V+RADEA
Sbjct: 247 HRFVGYLEEEAVASYTEFLAALDKGSMPNTPAPAIAIDYWRLPSDATLRDVVFVVRADEA 306

Query: 297 HHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           HHRDVNHFA+D   QGKEL+D+PAP+GYH
Sbjct: 307 HHRDVNHFAADAHLQGKELKDSPAPIGYH 335


>gi|302808760|ref|XP_002986074.1| hypothetical protein SELMODRAFT_446465 [Selaginella moellendorffii]
 gi|300146222|gb|EFJ12893.1| hypothetical protein SELMODRAFT_446465 [Selaginella moellendorffii]
          Length = 335

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 180/250 (72%), Positives = 213/250 (85%)

Query: 76  SSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLR 135
           S+YWGI   K  REDG+PWPWNCF P ++Y +D SID+KKHH+P   +DKVA +TVK LR
Sbjct: 86  SNYWGIITKKTLREDGTPWPWNCFKPSDSYVSDTSIDVKKHHIPDAVVDKVALKTVKFLR 145

Query: 136 IPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERM 195
           + +DLFFQ R+GC A++LETVAAVPGMVGGMLLH KSLRKF+HSGGWIKALLEEAENERM
Sbjct: 146 VLSDLFFQERHGCHAVLLETVAAVPGMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERM 205

Query: 196 HLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYL 255
           HLMT +E+ +PKWYER LVL VQGVFFN +F LYL+ P+LAHR VGYLEEEA+ SYT++L
Sbjct: 206 HLMTFMEVFQPKWYERALVLAVQGVFFNGYFALYLIFPRLAHRFVGYLEEEAVASYTDFL 265

Query: 256 KDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKEL 315
             +D GS+ N PAPAIAIDYWRLP DATL+DV+ V+RADEAHHRDVNHFA+D   QGKEL
Sbjct: 266 AALDKGSMPNTPAPAIAIDYWRLPSDATLRDVVFVVRADEAHHRDVNHFAADAHLQGKEL 325

Query: 316 RDAPAPLGYH 325
           +D+PAP+GYH
Sbjct: 326 KDSPAPIGYH 335


>gi|82468807|gb|ABB76768.1| alternative oxidase 1a [Solanum tuberosum]
          Length = 355

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 182/239 (76%), Positives = 208/239 (87%)

Query: 77  SYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRI 136
           SYWG+   K T+ DG+ W WNCF PWETY AD+SIDL KHH P TFLDK AY TVK+LR 
Sbjct: 108 SYWGVPPSKATKPDGTEWKWNCFRPWETYEADMSIDLTKHHAPVTFLDKFAYWTVKVLRF 167

Query: 137 PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMH 196
           PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH KSLR+F+ SGGWIKALLEEAENERMH
Sbjct: 168 PTDVFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMH 227

Query: 197 LMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLK 256
           LMT +E+ KP  YER LV TVQGVFFNA+F  YL+SPKLAHR+VGYLEEEA+HSYTE+LK
Sbjct: 228 LMTFMEVAKPNVYERALVFTVQGVFFNAYFAAYLISPKLAHRIVGYLEEEAVHSYTEFLK 287

Query: 257 DIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKEL 315
           ++D+G+IENVPAPAIAIDYWRLPKDATL+DV+ V+RADEAHHRDVNH+AS   ++  +L
Sbjct: 288 ELDNGNIENVPAPAIAIDYWRLPKDATLRDVVLVVRADEAHHRDVNHYASVRTYKADDL 346


>gi|357165634|ref|XP_003580446.1| PREDICTED: alternative oxidase 1a, mitochondrial-like [Brachypodium
           distachyon]
          Length = 330

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 182/274 (66%), Positives = 222/274 (81%), Gaps = 5/274 (1%)

Query: 52  SSYSSSSESVPEKVKEKGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSI 111
           ++  + S + PE+ K K    +V  SYWGI   K+ + DG+ WPW CF PW+TYRAD SI
Sbjct: 62  AAAKTDSAATPEQSKTKS---VV--SYWGIESRKLVKPDGTEWPWFCFTPWDTYRADTSI 116

Query: 112 DLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLK 171
           D++KHH P +  DKVAY  V+ LR+P DLFFQRR+   A++LETVAAVP MVGGMLLHL+
Sbjct: 117 DMEKHHKPKSVPDKVAYYAVRSLRVPMDLFFQRRHASHALLLETVAAVPPMVGGMLLHLR 176

Query: 172 SLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLL 231
           SLR+F+HSGGWI+AL+EEAENERMHLMT +E+ +P W+ER LV+  QGVF NA+FV YL+
Sbjct: 177 SLRRFEHSGGWIRALMEEAENERMHLMTFLEVTQPNWWERALVMAAQGVFVNAYFVGYLV 236

Query: 232 SPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVI 291
           SPK AHR VGYLEEEA+HSYTEYLKD+++G IEN PAPAIAIDYWRLP DATLKDV+TVI
Sbjct: 237 SPKFAHRFVGYLEEEAVHSYTEYLKDLEAGKIENTPAPAIAIDYWRLPADATLKDVVTVI 296

Query: 292 RADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           RADEAHHRD NH+ASDI +QG  L++ PAP+GYH
Sbjct: 297 RADEAHHRDANHYASDIHYQGLTLKETPAPIGYH 330


>gi|357484587|ref|XP_003612581.1| Alternative oxidase [Medicago truncatula]
 gi|355513916|gb|AES95539.1| Alternative oxidase [Medicago truncatula]
          Length = 262

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 182/226 (80%), Positives = 210/226 (92%)

Query: 100 MPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAV 159
           MPWETY+AD++IDL KHH PTTFLDK+AY TVK LR PTD+FFQRRYGCRAMMLETVAAV
Sbjct: 37  MPWETYKADVTIDLTKHHKPTTFLDKMAYWTVKSLRWPTDIFFQRRYGCRAMMLETVAAV 96

Query: 160 PGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQG 219
           PGMVGGMLLH KSLR+F+ SGGWIKALLEEAENERMHLMT +E+ KPKWYER LV+TVQG
Sbjct: 97  PGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVITVQG 156

Query: 220 VFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLP 279
           VFFNA+F+ YLLSPK AHR+VGYLEEEAIHSYTE+LK++D G+IENVPAPAIAIDYW+LP
Sbjct: 157 VFFNAYFLGYLLSPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAIDYWQLP 216

Query: 280 KDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           +++TL+DV+ V+RADEAHHRDVNHFASDI +QG+ELR+A AP+GYH
Sbjct: 217 QNSTLRDVVEVVRADEAHHRDVNHFASDIHYQGRELREAAAPIGYH 262


>gi|226498802|ref|NP_001147743.1| transposon protein [Zea mays]
 gi|195613414|gb|ACG28537.1| transposon protein [Zea mays]
 gi|414585626|tpg|DAA36197.1| TPA: alternative oxidase [Zea mays]
          Length = 329

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 181/257 (70%), Positives = 212/257 (82%)

Query: 69  GENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAY 128
           G++     SYWGI   K+ +EDG+ W W CF PW+TYRAD SID+KKHH P    DK+AY
Sbjct: 73  GQDKKAVVSYWGIEPRKLVKEDGTEWRWFCFRPWDTYRADTSIDMKKHHEPKALPDKLAY 132

Query: 129 RTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLE 188
             VK L +P  LFFQRR+   A++LETVAAVPGMVGGMLLHL+SLR+F+HSGGWI+ALLE
Sbjct: 133 WLVKSLVVPKQLFFQRRHASHALLLETVAAVPGMVGGMLLHLRSLRRFEHSGGWIRALLE 192

Query: 189 EAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAI 248
           EAENERMHLMT +E+ +PKW+ER LVL  QGV+FNA+FV YL SPK AHR VGYLEEEA+
Sbjct: 193 EAENERMHLMTFLEVAQPKWWERALVLAAQGVYFNAYFVAYLASPKFAHRFVGYLEEEAV 252

Query: 249 HSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDI 308
           HSYTEYLKD+++G I+N PAPAIAIDYWRLP DA LKDV+ V+RADEAHHRDVNHFASDI
Sbjct: 253 HSYTEYLKDLEAGIIDNTPAPAIAIDYWRLPADARLKDVVAVVRADEAHHRDVNHFASDI 312

Query: 309 QFQGKELRDAPAPLGYH 325
            +QG +LRD PAPLGYH
Sbjct: 313 HYQGMKLRDTPAPLGYH 329


>gi|51860697|gb|AAU11468.1| mitochondrial alternative oxidase 1b [Saccharum officinarum]
          Length = 285

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 179/258 (69%), Positives = 213/258 (82%)

Query: 68  KGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVA 127
           +G++     SYWGI   K+ +EDG+ W W CF PW+TYRAD SID+KKHH P   LDK+A
Sbjct: 28  EGQDKKAVVSYWGIQPRKLVKEDGTEWRWFCFRPWDTYRADTSIDMKKHHEPKALLDKLA 87

Query: 128 YRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALL 187
           Y  VK L +P  LFFQRR+   A++LETVAAVPGMVGGMLLHL+SLR+F+HS GWI+ALL
Sbjct: 88  YWLVKSLVVPKQLFFQRRHASHALLLETVAAVPGMVGGMLLHLRSLRRFEHSDGWIRALL 147

Query: 188 EEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEA 247
           EEAENERMHLMT +E+ +PKW+ER LVL  QGV+FNA+FV YL SPK AHR VGYLEEEA
Sbjct: 148 EEAENERMHLMTFLEVAQPKWWERALVLAAQGVYFNAYFVAYLASPKFAHRFVGYLEEEA 207

Query: 248 IHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASD 307
           +HSYTEYLKD+++G I+N P PAIAIDYWRLP DA LKDV+T++RADEAHHRDVNHFASD
Sbjct: 208 VHSYTEYLKDLEAGIIDNTPVPAIAIDYWRLPADAKLKDVVTIVRADEAHHRDVNHFASD 267

Query: 308 IQFQGKELRDAPAPLGYH 325
           I +QG +L+D PAPLGYH
Sbjct: 268 IHYQGMKLKDTPAPLGYH 285


>gi|225427478|ref|XP_002262811.1| PREDICTED: alternative oxidase 1a, mitochondrial [Vitis vinifera]
 gi|296088484|emb|CBI37475.3| unnamed protein product [Vitis vinifera]
          Length = 320

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 178/259 (68%), Positives = 221/259 (85%), Gaps = 2/259 (0%)

Query: 67  EKGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKV 126
           E G+  +V  SYWG++  K+T+EDG+ W W+CF P E Y+AD+SIDL KHHVP  + +KV
Sbjct: 64  EGGDKSVV--SYWGVAPVKLTKEDGTEWKWSCFKPSEAYKADVSIDLGKHHVPRVWTEKV 121

Query: 127 AYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKAL 186
           AY  VK+LR+PTD+FF+RR+  RAMMLETVAAVPGMVGGMLLH KSLR+F+HSGGWI+ L
Sbjct: 122 AYWGVKMLRLPTDIFFKRRFEMRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIRVL 181

Query: 187 LEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEE 246
           LEEAENERMHLMT +E+ KP+WYER LV  VQG+F+N +FV Y++SPK+AHR VGYLEEE
Sbjct: 182 LEEAENERMHLMTFMEVAKPRWYERALVFAVQGIFWNFYFVAYVISPKVAHRAVGYLEEE 241

Query: 247 AIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFAS 306
           AIHSY E++K++DSG+I NVPAPAIAIDYWRL  D+TL+DV+ V+RADEAHHRDVNH+AS
Sbjct: 242 AIHSYNEFIKELDSGNIPNVPAPAIAIDYWRLAPDSTLRDVVMVVRADEAHHRDVNHYAS 301

Query: 307 DIQFQGKELRDAPAPLGYH 325
           DI +QG +L++ PAPLGYH
Sbjct: 302 DIHYQGLQLKEFPAPLGYH 320


>gi|357165631|ref|XP_003580445.1| PREDICTED: alternative oxidase 1b, mitochondrial-like [Brachypodium
           distachyon]
          Length = 324

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 174/249 (69%), Positives = 210/249 (84%)

Query: 77  SYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRI 136
           SYWGI   K+ + DG+ WPW CF PW+TY AD +ID++KHH P +  DK+AY TVK L +
Sbjct: 76  SYWGIEPRKLVKADGTEWPWFCFRPWDTYTADTAIDMQKHHEPKSLPDKIAYYTVKTLGV 135

Query: 137 PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMH 196
           P DLFFQRR+   A++LETVAAVP MVGGMLLHL+SLR+F+HSGGWI+AL+EEAENERMH
Sbjct: 136 PKDLFFQRRHASHALLLETVAAVPPMVGGMLLHLRSLRRFEHSGGWIRALMEEAENERMH 195

Query: 197 LMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLK 256
           LMT +E+ +PKW+ER LV+ VQGVFFNA+FV YL+SPK AHR VGYLEEEA+ SYTEYLK
Sbjct: 196 LMTFLEVTQPKWWERALVMAVQGVFFNAYFVGYLVSPKFAHRFVGYLEEEAVKSYTEYLK 255

Query: 257 DIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELR 316
           D+++G IEN PAPAIAIDYWRLP DATLKDV+ V+RADEAHHRD NH+ASDI +QG  L+
Sbjct: 256 DLEAGKIENTPAPAIAIDYWRLPADATLKDVVAVVRADEAHHRDANHYASDIHYQGLTLK 315

Query: 317 DAPAPLGYH 325
           + PAP+GYH
Sbjct: 316 ETPAPIGYH 324


>gi|115460318|ref|NP_001053759.1| Os04g0600300 [Oryza sativa Japonica Group]
 gi|3218543|dbj|BAA28771.1| alternative oxidase [Oryza sativa Japonica Group]
 gi|3218548|dbj|BAA28774.1| alternative oxidase [Oryza sativa Japonica Group]
 gi|38345774|emb|CAE03472.2| OSJNBa0083N12.12 [Oryza sativa Japonica Group]
 gi|113565330|dbj|BAF15673.1| Os04g0600300 [Oryza sativa Japonica Group]
 gi|116310915|emb|CAH67853.1| B0403H10-OSIGBa0105A11.5 [Oryza sativa Indica Group]
 gi|125549593|gb|EAY95415.1| hypothetical protein OsI_17255 [Oryza sativa Indica Group]
 gi|125591518|gb|EAZ31868.1| hypothetical protein OsJ_16033 [Oryza sativa Japonica Group]
 gi|215741542|dbj|BAG98037.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 335

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 188/300 (62%), Positives = 224/300 (74%), Gaps = 14/300 (4%)

Query: 40  MPLLGLRMMVMMSSYSSSSESVPEKVKEK--------------GENGIVPSSYWGISRPK 85
           MP         M+S SS+   V E   EK               +N     SYWGI  PK
Sbjct: 36  MPAAARIFPARMASTSSAGADVKEGAAEKLPEPAATAAAAATDPQNKKAVVSYWGIQPPK 95

Query: 86  ITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRR 145
           + +EDG+ W W  F PW+TY +D SID+ KHH P    DK+AY TV+ L +P DLFFQRR
Sbjct: 96  LVKEDGTEWKWLSFRPWDTYTSDTSIDVTKHHEPKGLPDKLAYWTVRSLAVPRDLFFQRR 155

Query: 146 YGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVK 205
           +   A++LETVA VPGMVGGMLLHL+SLR+F+ SGGWI+ALLEEAENERMHLMT +E+++
Sbjct: 156 HASHALLLETVAGVPGMVGGMLLHLRSLRRFEQSGGWIRALLEEAENERMHLMTFLEVMQ 215

Query: 206 PKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIEN 265
           P+W+ER LVL  QGVFFNA+FV YL+SPK AHR VGYLEEEA+ SYTEYLKD+++G IEN
Sbjct: 216 PRWWERALVLAAQGVFFNAYFVGYLVSPKFAHRFVGYLEEEAVSSYTEYLKDLEAGKIEN 275

Query: 266 VPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
            PAPAIAIDYWRLP DATLKDV+TVIRADEAHHRD+NHFASDIQ QG +L+D PAP+GYH
Sbjct: 276 TPAPAIAIDYWRLPADATLKDVVTVIRADEAHHRDLNHFASDIQQQGMKLKDTPAPIGYH 335


>gi|302760025|ref|XP_002963435.1| hypothetical protein SELMODRAFT_80767 [Selaginella moellendorffii]
 gi|300168703|gb|EFJ35306.1| hypothetical protein SELMODRAFT_80767 [Selaginella moellendorffii]
          Length = 320

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/291 (65%), Positives = 221/291 (75%), Gaps = 12/291 (4%)

Query: 45  LRMMVMMSSYSSSSES-------VPEKVKEKGENGI---VPSSYWGISRPKITREDGSPW 94
           LR      S SS+ E+        P      G +G    V S YWGI   +  REDG  W
Sbjct: 32  LRYFSSKGSASSTGETHTPPPSVKPSNSGSAGGDGTAKPVLSHYWGIVTKRPVREDGKAW 91

Query: 95  PWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLE 154
           PWN F P + Y  D+SIDLKKHH P +F+DK AY T   L +   LF QRRYGCRAMMLE
Sbjct: 92  PWNSFRPTDAYTPDVSIDLKKHHTPLSFVDKFAYWTSYKLGL--VLFLQRRYGCRAMMLE 149

Query: 155 TVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLV 214
           TVAAVPGMVGGMLLH +SLR+F+HSGGWIKALLEEAENERMHLMT +E+V+PKWYER LV
Sbjct: 150 TVAAVPGMVGGMLLHCRSLRRFEHSGGWIKALLEEAENERMHLMTFMEVVQPKWYERALV 209

Query: 215 LTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAID 274
             VQGVFFNA+ V Y+  P+LAHR+VGYLEEEAIHSYTEY+K+ID G+I N PAPAIAID
Sbjct: 210 FAVQGVFFNAYMVCYIAFPRLAHRIVGYLEEEAIHSYTEYIKEIDKGNIPNTPAPAIAID 269

Query: 275 YWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           YWRLPKDA ++DV+ V+RADEAHHRDVNHFA+DI  +GK+LR+APAPLGYH
Sbjct: 270 YWRLPKDAKIRDVVQVVRADEAHHRDVNHFAADIHLKGKQLREAPAPLGYH 320


>gi|326519218|dbj|BAJ96608.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 324

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 181/289 (62%), Positives = 219/289 (75%), Gaps = 3/289 (1%)

Query: 40  MPLLGLRMMVMMSSYSSSSESVPEKVKEKGENGIVPS---SYWGISRPKITREDGSPWPW 96
           MP         M+S +++  +  E+  EK +    P    SYWGI   K+ ++DG+ WPW
Sbjct: 36  MPAATRIFPARMASTAAAPHAKQEEATEKPQGATTPEQAVSYWGIEPRKLVKDDGTEWPW 95

Query: 97  NCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETV 156
            CF PW+TYR D SID+ KHH P    DKVAY  V+ LR  +DLFFQRR+   A++LETV
Sbjct: 96  FCFRPWDTYRPDTSIDVAKHHEPRALPDKVAYLIVRTLRAGSDLFFQRRHASHALLLETV 155

Query: 157 AAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLT 216
           AAVP MVGG+LLHL+SLR+F+HSGGWI+AL+EEAENERMHLMT +E+ +P W+ER LVL 
Sbjct: 156 AAVPPMVGGVLLHLRSLRRFEHSGGWIRALMEEAENERMHLMTFMEVTQPLWWERALVLA 215

Query: 217 VQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYW 276
            QGVFFNA+FV YL+SPK AHR VGYLEEEA+HSYTEYLKD+++G IEN PAPAIAIDYW
Sbjct: 216 TQGVFFNAYFVGYLVSPKFAHRFVGYLEEEAVHSYTEYLKDLEAGLIENTPAPAIAIDYW 275

Query: 277 RLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           RLP DA LKDV+T +RADEAHHRD NH+ASDI +QG  L   PAPLGYH
Sbjct: 276 RLPADARLKDVVTAVRADEAHHRDANHYASDIHYQGMTLNQTPAPLGYH 324


>gi|90959751|dbj|BAE92716.1| Alternative Oxidase [Solanum tuberosum]
          Length = 337

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 174/226 (76%), Positives = 197/226 (87%)

Query: 77  SYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRI 136
           SYWG+   K T+ DG+ W WNCF PWETY AD+SIDL KHH P TFLDK AY TVK+LR 
Sbjct: 108 SYWGVPPSKATKPDGTEWKWNCFRPWETYEADMSIDLTKHHAPVTFLDKFAYWTVKVLRF 167

Query: 137 PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMH 196
           PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH KSLR+F+ SGGWIKALLEEAENERMH
Sbjct: 168 PTDVFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMH 227

Query: 197 LMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLK 256
           LMT +E+ KP  YER LV  VQGVFFNA+F  YL+SPKLAHR+VGYLEEEA+HSYTE+LK
Sbjct: 228 LMTFMEVAKPNVYERALVFAVQGVFFNAYFAAYLISPKLAHRIVGYLEEEAVHSYTEFLK 287

Query: 257 DIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVN 302
           ++D+G+IENVPAPAIAIDYWRLPKDATL+DV+ V+RADEAHHR+  
Sbjct: 288 ELDNGNIENVPAPAIAIDYWRLPKDATLRDVVLVVRADEAHHRECQ 333


>gi|168044781|ref|XP_001774858.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673752|gb|EDQ60270.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 289

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 179/267 (67%), Positives = 220/267 (82%), Gaps = 2/267 (0%)

Query: 60  SVPEKVKEKGENGIVPSSYWGISRPKIT-REDGSPWPWNCFMPWETYRADLSIDLKKHHV 118
           +V    +EK       SSYWG+  PK+  +EDG+PW W CF P ETY  D++IDL+K H 
Sbjct: 24  TVKSGSEEKFVKATDISSYWGVV-PKVQHKEDGTPWKWTCFTPHETYYPDVTIDLEKTHA 82

Query: 119 PTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQH 178
             T+ D +AY  VK LR+P+D+FF++RY  RAMMLETVAAVPGMVGGMLLH KSLRKFQ+
Sbjct: 83  RKTYTDSIAYWLVKSLRVPSDMFFKKRYDVRAMMLETVAAVPGMVGGMLLHCKSLRKFQN 142

Query: 179 SGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHR 238
           SGGWIKALLEEAENERMHLMT +E+ +PKW+ER LV  VQGVFFNA+F+LYL+SPK+AHR
Sbjct: 143 SGGWIKALLEEAENERMHLMTFMEVAQPKWWERALVFAVQGVFFNAYFLLYLVSPKIAHR 202

Query: 239 VVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHH 298
           + GYLEEEA++SYT++LK ID G  +N PAP+IAIDYWRLPKDAT++DV+ V+RADEAHH
Sbjct: 203 ITGYLEEEAVYSYTQFLKMIDEGHFQNGPAPSIAIDYWRLPKDATIRDVVMVVRADEAHH 262

Query: 299 RDVNHFASDIQFQGKELRDAPAPLGYH 325
           RDVNHFA+DI  +GKELR++PAP+GYH
Sbjct: 263 RDVNHFAADILDRGKELRESPAPVGYH 289


>gi|297797435|ref|XP_002866602.1| hypothetical protein ARALYDRAFT_496620 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312437|gb|EFH42861.1| hypothetical protein ARALYDRAFT_496620 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 355

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 196/287 (68%), Positives = 224/287 (78%), Gaps = 8/287 (2%)

Query: 46  RMMVMMSSYSSSSESVPEKVKEKGENGIVPSSYWGI--SRPKITREDGSPWPWNCFMPWE 103
           R M   S+  +  E+   K  + G   +   SYWGI  ++ KITR+DGS WPWNCFMPWE
Sbjct: 70  RRMSSASATENKDENSTVKKDQNGGGSVAVPSYWGIETAKMKITRKDGSDWPWNCFMPWE 129

Query: 104 TYRADLSIDLKKHHVPTT---FLDKVAYRTVKLLRIP-TDLFFQRRYGCRAM-MLETVAA 158
           TY+A+LSIDLKKHHVP       D  A         P   L  Q+    ++  MLETVAA
Sbjct: 130 TYQANLSIDLKKHHVPNRQNRLPDSQAPPYSHRYIFPGMTLALQKTIWMQSNDMLETVAA 189

Query: 159 VPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQ 218
           VPGMVGGMLLHLKS+RKF+HSG WIKALLEEAENERMHLMTM+ELVKPKWYER+LV+ VQ
Sbjct: 190 VPGMVGGMLLHLKSIRKFEHSGSWIKALLEEAENERMHLMTMMELVKPKWYERLLVMLVQ 249

Query: 219 GVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRL 278
           G+F N+F V Y++SP+LAHRVVGYLEEEAIHSYTE+LKDID G IENV APAIAIDYWRL
Sbjct: 250 GIF-NSFLVCYVMSPRLAHRVVGYLEEEAIHSYTEFLKDIDDGKIENVAAPAIAIDYWRL 308

Query: 279 PKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           PKDATLKDV+TVIRADEAHHRDVNHFASDI+ QGKELR+A AP+GYH
Sbjct: 309 PKDATLKDVVTVIRADEAHHRDVNHFASDIRNQGKELREAGAPIGYH 355


>gi|433335541|gb|AGB34164.1| mitochondrial alternative oxidase 1c [Olea europaea subsp.
           europaea]
          Length = 353

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 175/239 (73%), Positives = 207/239 (86%), Gaps = 1/239 (0%)

Query: 69  GENG-IVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVA 127
           G+NG  V SSYWG+   + T+EDGSPW WNCF PWETY+AD SID+ KHH  TTF+DK A
Sbjct: 74  GQNGKAVVSSYWGVPPSRATKEDGSPWRWNCFRPWETYKADTSIDVTKHHKATTFMDKFA 133

Query: 128 YRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALL 187
           Y TV+ L+ PT LFFQRR+ C AM+LETVAAVPGMVGGMLLHLKS+R+F+HSGGWIKALL
Sbjct: 134 YWTVQSLKFPTYLFFQRRHMCHAMLLETVAAVPGMVGGMLLHLKSIRRFEHSGGWIKALL 193

Query: 188 EEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEA 247
           EEAENERMHLMT +EL +PKWY+R LV  VQGVF NA+FV Y++SPKLAHR+VGYLEEEA
Sbjct: 194 EEAENERMHLMTFLELSQPKWYQRALVFAVQGVFANAYFVSYVVSPKLAHRIVGYLEEEA 253

Query: 248 IHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFAS 306
           ++SYTE+L D++ G +EN PAPAIAIDYW+LP ++TLKDV+TVIRADEAHHRD+NHFAS
Sbjct: 254 VNSYTEFLIDLEKGLVENRPAPAIAIDYWQLPSESTLKDVVTVIRADEAHHRDLNHFAS 312


>gi|326521476|dbj|BAK00314.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 330

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 173/256 (67%), Positives = 206/256 (80%)

Query: 70  ENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYR 129
           +N     SYWGI   K+ ++DG+ WPW CF PW+TYR D SI + KHH P    DKVAY 
Sbjct: 75  QNKKAVVSYWGIEPRKLVKDDGTEWPWFCFRPWDTYRPDTSIGVAKHHEPRALPDKVAYF 134

Query: 130 TVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEE 189
            V+ LR+P DLFFQRR+   A++LETVAAVP MVGG+LLHL+SLR+F+HSGGWI+AL+EE
Sbjct: 135 VVRSLRVPRDLFFQRRHASHALLLETVAAVPPMVGGVLLHLRSLRRFEHSGGWIRALMEE 194

Query: 190 AENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIH 249
           AENERMHLMT +E+ +P+W+ER LVL  QGVFFNA+FV YL+SPK AHR VGYLEEEA+ 
Sbjct: 195 AENERMHLMTFMEVTQPRWWERALVLAAQGVFFNAYFVGYLISPKFAHRFVGYLEEEAVE 254

Query: 250 SYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQ 309
           SYTEYLKD+++G IEN PAPAIAIDYWRLP DA LKDV+T +RADEAHHRD NH+ASDI 
Sbjct: 255 SYTEYLKDLEAGLIENTPAPAIAIDYWRLPADARLKDVVTAVRADEAHHRDANHYASDIH 314

Query: 310 FQGKELRDAPAPLGYH 325
           +QG  L   PAPLGYH
Sbjct: 315 YQGMTLNQTPAPLGYH 330


>gi|302776856|ref|XP_002971569.1| hypothetical protein SELMODRAFT_231845 [Selaginella moellendorffii]
 gi|300160701|gb|EFJ27318.1| hypothetical protein SELMODRAFT_231845 [Selaginella moellendorffii]
          Length = 309

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/291 (64%), Positives = 217/291 (74%), Gaps = 23/291 (7%)

Query: 45  LRMMVMMSSYSSSSES--VPEKVKEK--------GENGIVPSSYWGISRPKITREDGSPW 94
           LR      S SS+ E+   P  VK          G +  V S YWGI   +  REDG  W
Sbjct: 32  LRYFSSKGSASSTGETHTPPPSVKPSNSGSAGGDGNDKPVLSHYWGIVTKRPVREDGKAW 91

Query: 95  PWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLE 154
           PWN F P + Y  D+SIDLKKHH P +F+DK AY T             RRYGCRAMMLE
Sbjct: 92  PWNSFRPSDAYTPDVSIDLKKHHTPLSFVDKFAYWT-------------RRYGCRAMMLE 138

Query: 155 TVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLV 214
           TVAAVPGMVGGMLLH +SLR+F+HSGGWIKALLEEAENERMHLMT +E+V+PKWYER LV
Sbjct: 139 TVAAVPGMVGGMLLHCRSLRRFEHSGGWIKALLEEAENERMHLMTFMEVVQPKWYERALV 198

Query: 215 LTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAID 274
             VQGVFFNA+ V Y+  P+LAHR+VGYLEEEAIHSYTEY+K+ID G+I N PAPAIAID
Sbjct: 199 FAVQGVFFNAYMVCYIAFPRLAHRIVGYLEEEAIHSYTEYIKEIDKGNIPNTPAPAIAID 258

Query: 275 YWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           YWRLPKDA ++DV+ V+RADEAHHRDVNHFA+DI  +GK+LR+APAPLGYH
Sbjct: 259 YWRLPKDAKIRDVVQVVRADEAHHRDVNHFAADIHLKGKQLREAPAPLGYH 309


>gi|414585625|tpg|DAA36196.1| TPA: hypothetical protein ZEAMMB73_161603 [Zea mays]
          Length = 332

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 172/244 (70%), Positives = 202/244 (82%)

Query: 63  EKVKEKGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTF 122
           E+    G++     SYWGI  PK+ +EDG+ W W  F PW+ Y +D SID+ KHH PTT 
Sbjct: 70  EEEAAGGQSKKAVVSYWGIDTPKLVKEDGTEWKWTSFRPWDAYTSDTSIDIGKHHAPTTL 129

Query: 123 LDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGW 182
            DK AY  VK LR+P DLFFQRR+   A++LETVAAVPGMVGGMLLHL+SLR+F+HSGGW
Sbjct: 130 PDKAAYLIVKSLRVPMDLFFQRRHASHALLLETVAAVPGMVGGMLLHLRSLRRFEHSGGW 189

Query: 183 IKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGY 242
           I+ALLEEAENERMHLMT +E+ +P+W+ER LVLT QGVFFNA+FV YLLSPK AHRVVGY
Sbjct: 190 IRALLEEAENERMHLMTFLEVTQPRWWERALVLTAQGVFFNAYFVGYLLSPKFAHRVVGY 249

Query: 243 LEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVN 302
           LEEEA+HSYTEYLKD+++G I+N PAPAIAIDYWRLP DA LKDV+TV+RADEAHHRDVN
Sbjct: 250 LEEEAVHSYTEYLKDLEAGIIDNTPAPAIAIDYWRLPADAKLKDVVTVVRADEAHHRDVN 309

Query: 303 HFAS 306
           HFAS
Sbjct: 310 HFAS 313


>gi|125581850|gb|EAZ22781.1| hypothetical protein OsJ_06456 [Oryza sativa Japonica Group]
          Length = 404

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 169/233 (72%), Positives = 199/233 (85%), Gaps = 1/233 (0%)

Query: 94  WPWNCFM-PWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMM 152
           WP + F  PW+TY AD++IDL KHH P T  DKVA  TVK LR P DLFFQRRYGCRAMM
Sbjct: 172 WPVDLFFQPWDTYEADVAIDLTKHHNPATLGDKVARWTVKSLRWPVDLFFQRRYGCRAMM 231

Query: 153 LETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERM 212
           LETVAAVPGMV G +LHL+SLR+F+HSGGWI+ALLEEAENERMHLMT +E+ +P+WYER 
Sbjct: 232 LETVAAVPGMVAGAVLHLRSLRRFEHSGGWIRALLEEAENERMHLMTFMEVSQPRWYERA 291

Query: 213 LVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIA 272
           LV+ VQG FFNA+   YLLSP+ AHR+VGYLEEEA+HSYTE+L+D+D+G I++VPAPAIA
Sbjct: 292 LVVAVQGAFFNAYLASYLLSPRFAHRIVGYLEEEAVHSYTEFLRDLDAGKIDDVPAPAIA 351

Query: 273 IDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           IDYWRLP DATL+DV+ V+RADEAHHRDVNH+ASDI +QG  LR+  APLGYH
Sbjct: 352 IDYWRLPADATLRDVVMVVRADEAHHRDVNHYASDIHYQGHALREVAAPLGYH 404


>gi|12597864|gb|AAG60173.1|AC084110_6 oxidase, putative [Arabidopsis thaliana]
          Length = 287

 Score =  366 bits (939), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 175/284 (61%), Positives = 213/284 (75%), Gaps = 32/284 (11%)

Query: 42  LLGLRMMVMMSSYSSSSESVPEKVKEKGENGIVPSSYWGISRPKITREDGSPWPWNCFMP 101
           L  +R++   +S   S  + PE    +  +G V S+YWGI   KIT+ DGS W WNCF P
Sbjct: 36  LPNVRLLSSDTSSPVSGNNQPEN-PIRTADGKVISTYWGIPPTKITKPDGSAWKWNCFQP 94

Query: 102 WETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPG 161
           W++Y+ D+SID                               R++ C AM+LETVAAVPG
Sbjct: 95  WDSYKPDVSID-------------------------------RKHMCHAMLLETVAAVPG 123

Query: 162 MVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVF 221
           MVGGMLLHLKSLR+F+HSGGWIKALLEEAENERMHLMT +EL +PKWYER +V TVQGVF
Sbjct: 124 MVGGMLLHLKSLRRFEHSGGWIKALLEEAENERMHLMTFIELSQPKWYERAIVFTVQGVF 183

Query: 222 FNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKD 281
           FNA+F+ Y++SPKLAHR+ GYLEEEA++SYTE+LKDID+G  EN PAPAIAIDYWRLPKD
Sbjct: 184 FNAYFLAYVISPKLAHRITGYLEEEAVNSYTEFLKDIDAGKFENSPAPAIAIDYWRLPKD 243

Query: 282 ATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           ATL+DV+ VIRADEAHHRD+NH+ASDIQF+G EL++APAP+GYH
Sbjct: 244 ATLRDVVYVIRADEAHHRDINHYASDIQFKGHELKEAPAPIGYH 287


>gi|208436660|gb|ACI28876.1| mitochondrial alternative oxidase 1a, partial [Vitis vinifera]
          Length = 297

 Score =  355 bits (910), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 162/236 (68%), Positives = 199/236 (84%), Gaps = 2/236 (0%)

Query: 67  EKGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKV 126
           E G+  +V  SYWG++  K+T+EDG+ W W+CF P E Y+AD+SIDL KHHVP  + +KV
Sbjct: 64  EGGDKSVV--SYWGVAPVKLTKEDGTEWKWSCFKPSEAYKADVSIDLGKHHVPRVWTEKV 121

Query: 127 AYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKAL 186
           AY  VK+LR+PTD+FF+RR+  RAMMLETVAAVPGMVGGMLLH KSLR+F+HSGGWI+ L
Sbjct: 122 AYWGVKMLRLPTDIFFKRRFEMRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIRVL 181

Query: 187 LEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEE 246
           LEEAENERMHLMT +E+ KP+WYER LV  VQG+F+N +FV Y++SPK+AHR VGYLEEE
Sbjct: 182 LEEAENERMHLMTFMEVAKPRWYERALVFAVQGIFWNFYFVAYVISPKVAHRAVGYLEEE 241

Query: 247 AIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVN 302
           AIHS  E++K++DSG+I NVPAPAIAIDYWRL  D+TL+DV+ V RADEAHHRDVN
Sbjct: 242 AIHSCNEFIKELDSGNIPNVPAPAIAIDYWRLAPDSTLRDVVMVARADEAHHRDVN 297


>gi|208436644|gb|ACI28868.1| mitochondrial alternative oxidase 1b, partial [Vitis vinifera]
          Length = 205

 Score =  337 bits (863), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 151/204 (74%), Positives = 179/204 (87%)

Query: 96  WNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLET 155
           WN F PWETY+AD+SID++KHH P  F+DK AY TV+ L+IPT +FFQR++ C AM+LET
Sbjct: 2   WNSFRPWETYKADISIDVEKHHKPVKFMDKFAYWTVQALKIPTHMFFQRKHMCHAMLLET 61

Query: 156 VAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVL 215
           VAAVPGMVGGMLLH +SLR+F+ SGGWIKALLEEAENERMHLMT +EL KP+WYER LV 
Sbjct: 62  VAAVPGMVGGMLLHCQSLRRFEQSGGWIKALLEEAENERMHLMTFIELAKPQWYERALVF 121

Query: 216 TVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDY 275
            VQGVFFNA+F+ YL SPK+AHR+ GYLEEEA+ SYTE+LKD+D+GS ENVPAPAIAIDY
Sbjct: 122 AVQGVFFNAYFLTYLASPKVAHRITGYLEEEAVRSYTEFLKDLDNGSFENVPAPAIAIDY 181

Query: 276 WRLPKDATLKDVITVIRADEAHHR 299
           WRLP ++TL+DV+ VIRADEAHHR
Sbjct: 182 WRLPAESTLRDVVEVIRADEAHHR 205


>gi|433335543|gb|AGB34165.1| mitochondrial alternative oxidase 2, partial [Olea europaea subsp.
           europaea]
          Length = 169

 Score =  334 bits (857), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 160/169 (94%), Positives = 166/169 (98%)

Query: 157 AAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLT 216
           AAVPGMVGGMLLHL+SLRKF+ SGGWIKALLEEAENERMHLMTMVELV+PKWYER+LVLT
Sbjct: 1   AAVPGMVGGMLLHLRSLRKFEQSGGWIKALLEEAENERMHLMTMVELVQPKWYERVLVLT 60

Query: 217 VQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYW 276
           VQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSG IENVPAPAIAIDYW
Sbjct: 61  VQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGKIENVPAPAIAIDYW 120

Query: 277 RLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           RLPKDATLKDVITVIRADEAHHRDVNHFASDI FQGKELR+APAP+GYH
Sbjct: 121 RLPKDATLKDVITVIRADEAHHRDVNHFASDIHFQGKELREAPAPVGYH 169


>gi|208436662|gb|ACI28877.1| mitochondrial alternative oxidase 1b [Vitis vinifera]
          Length = 201

 Score =  329 bits (844), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 146/201 (72%), Positives = 176/201 (87%)

Query: 94  WPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMML 153
           W W+CF PWETY+AD+SID++KHH P  F+DK AY TV+ L++PT +FFQR++ C AM+L
Sbjct: 1   WKWHCFRPWETYKADISIDVEKHHKPVKFMDKFAYWTVQALKVPTHMFFQRKHMCHAMLL 60

Query: 154 ETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERML 213
           ETVAAVPGMVGGMLLH +SLR+F+ SGGWIKALLEEAENERMHLMT +EL KP+WYER L
Sbjct: 61  ETVAAVPGMVGGMLLHCQSLRRFEQSGGWIKALLEEAENERMHLMTFIELAKPQWYERAL 120

Query: 214 VLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAI 273
           V  VQGVFFNA+F+ YL SPK+AHR+ GYLEEEA+ SYTE+LKD+D+GS ENVPAPAIAI
Sbjct: 121 VFAVQGVFFNAYFLTYLASPKVAHRITGYLEEEAVRSYTEFLKDLDNGSFENVPAPAIAI 180

Query: 274 DYWRLPKDATLKDVITVIRAD 294
           DYWRLP ++TL+DV+ VIRAD
Sbjct: 181 DYWRLPAESTLRDVVEVIRAD 201


>gi|147799085|emb|CAN72564.1| hypothetical protein VITISV_018234 [Vitis vinifera]
          Length = 218

 Score =  325 bits (834), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 149/203 (73%), Positives = 180/203 (88%)

Query: 123 LDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGW 182
           L KVAY  VK+LR+PTD+FF+RR+  RAMMLETVAAVPGMVGGMLLH KSLR+F+HSGGW
Sbjct: 16  LRKVAYWGVKMLRLPTDIFFKRRFEMRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGW 75

Query: 183 IKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGY 242
           I+ LLEEAENERMHLMT +E+ KP+WYER LV  VQG+F+N +FV Y++SPK+AHR VGY
Sbjct: 76  IRVLLEEAENERMHLMTFMEVAKPRWYERALVFAVQGIFWNFYFVAYVISPKVAHRAVGY 135

Query: 243 LEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVN 302
           LEEEAIHSY E++K++DSG+I NVPAPAIAIDYWRL  D+TL+DV+ V+RADEAHHRDVN
Sbjct: 136 LEEEAIHSYNEFIKELDSGNIPNVPAPAIAIDYWRLAPDSTLRDVVMVVRADEAHHRDVN 195

Query: 303 HFASDIQFQGKELRDAPAPLGYH 325
           H+ASDI +QG +L++ PAPLGYH
Sbjct: 196 HYASDIHYQGLQLKEFPAPLGYH 218


>gi|208436648|gb|ACI28870.1| mitochondrial alternative oxidase 1b, partial [Vitis vinifera]
          Length = 199

 Score =  325 bits (832), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 146/199 (73%), Positives = 175/199 (87%)

Query: 101 PWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVP 160
           PWETY+AD+SID++KHH P  F+DK AY TV+ L+IPT +FFQR++ C AM+LETVAAVP
Sbjct: 1   PWETYKADISIDVEKHHKPVKFMDKFAYWTVQALKIPTHMFFQRKHMCHAMLLETVAAVP 60

Query: 161 GMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGV 220
           GMVGGMLLH +S R+F+ SGGWIKALLEEAENERMHLMT +EL KP+WYER +V  VQGV
Sbjct: 61  GMVGGMLLHCQSPRRFEQSGGWIKALLEEAENERMHLMTFIELAKPQWYERAIVFAVQGV 120

Query: 221 FFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPK 280
           FFNA+F+ YL SPK+AHR+ GYLEEEA+ SYTE+LKD+D+GS ENVPAPAIAIDYWRLP 
Sbjct: 121 FFNAYFLTYLASPKVAHRITGYLEEEAVRSYTEFLKDLDNGSFENVPAPAIAIDYWRLPA 180

Query: 281 DATLKDVITVIRADEAHHR 299
           ++TL+DV+ VIRADEAHHR
Sbjct: 181 ESTLRDVVEVIRADEAHHR 199


>gi|33087083|gb|AAP92755.1| alternative oxidase 2 [Solanum lycopersicum]
          Length = 173

 Score =  319 bits (817), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 152/173 (87%), Positives = 163/173 (94%)

Query: 153 LETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERM 212
           LETVA VPGMVGGMLLHL+SLRKF+HSGGWIKALLEEAENERMHLMTMVELV+PKWYER+
Sbjct: 1   LETVAGVPGMVGGMLLHLRSLRKFEHSGGWIKALLEEAENERMHLMTMVELVQPKWYERL 60

Query: 213 LVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIA 272
           LV+ VQGVFFN + VLYLLSPKLAHRVVGYLEEEAIHSYT YL DID G IENVPAPAIA
Sbjct: 61  LVIAVQGVFFNFYSVLYLLSPKLAHRVVGYLEEEAIHSYTLYLNDIDRGEIENVPAPAIA 120

Query: 273 IDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           IDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDI +QGK+L++A AP+GYH
Sbjct: 121 IDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIHYQGKKLQEAAAPIGYH 173


>gi|297599105|ref|NP_001046676.2| Os02g0318100 [Oryza sativa Japonica Group]
 gi|255670840|dbj|BAF08590.2| Os02g0318100 [Oryza sativa Japonica Group]
          Length = 192

 Score =  311 bits (797), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 138/183 (75%), Positives = 164/183 (89%)

Query: 143 QRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVE 202
           QRRYGCRAMMLETVAAVPGMV G +LHL+SLR+F+HSGGWI+ALLEEAENERMHLMT +E
Sbjct: 10  QRRYGCRAMMLETVAAVPGMVAGAVLHLRSLRRFEHSGGWIRALLEEAENERMHLMTFME 69

Query: 203 LVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGS 262
           + +P+WYER LV+ VQG FFNA+   YLLSP+ AHR+VGYLEEEA+HSYTE+L+D+D+G 
Sbjct: 70  VSQPRWYERALVVAVQGAFFNAYLASYLLSPRFAHRIVGYLEEEAVHSYTEFLRDLDAGK 129

Query: 263 IENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPL 322
           I++VPAPAIAIDYWRLP DATL+DV+ V+RADEAHHRDVNH+ASDI +QG  LR+  APL
Sbjct: 130 IDDVPAPAIAIDYWRLPADATLRDVVMVVRADEAHHRDVNHYASDIHYQGHALREVAAPL 189

Query: 323 GYH 325
           GYH
Sbjct: 190 GYH 192


>gi|357490779|ref|XP_003615677.1| Alternative oxidase [Medicago truncatula]
 gi|355517012|gb|AES98635.1| Alternative oxidase [Medicago truncatula]
          Length = 231

 Score =  311 bits (796), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 153/181 (84%), Positives = 168/181 (92%)

Query: 145 RYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELV 204
           RYGC AMMLET+AAVPGMVGGMLLHLKSLRKFQH+GGWIKALLEEAENERMHLMTMVELV
Sbjct: 51  RYGCHAMMLETIAAVPGMVGGMLLHLKSLRKFQHAGGWIKALLEEAENERMHLMTMVELV 110

Query: 205 KPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIE 264
           KP W+ER+LV+T QGVFFN FFV Y+LSPK+AHR VGYLEEEA+ SYT+YL  I+SG +E
Sbjct: 111 KPSWHERLLVITAQGVFFNGFFVFYILSPKIAHRFVGYLEEEAVISYTQYLNAIESGKVE 170

Query: 265 NVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGY 324
           NVPAPAIAIDYWRLP DATLKDV+TVIRADEAHHRDVNHFASDI  QGKEL++APAP+GY
Sbjct: 171 NVPAPAIAIDYWRLPNDATLKDVVTVIRADEAHHRDVNHFASDIHHQGKELKEAPAPVGY 230

Query: 325 H 325
           H
Sbjct: 231 H 231


>gi|294463331|gb|ADE77201.1| unknown [Picea sitchensis]
          Length = 175

 Score =  310 bits (795), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 141/175 (80%), Positives = 162/175 (92%)

Query: 151 MMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYE 210
           MMLETVAAVPGMVGGMLLH KSLRKFQHS GWIKALLEEAENERMHLMT +E+ +PKWYE
Sbjct: 1   MMLETVAAVPGMVGGMLLHCKSLRKFQHSAGWIKALLEEAENERMHLMTFMEVAQPKWYE 60

Query: 211 RMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPA 270
           + LV TVQGVFFNA+F++Y+ SPKLAHR+VGYLEEEAIHSYTE++K++D G+I NVPAPA
Sbjct: 61  KALVFTVQGVFFNAYFLMYIFSPKLAHRIVGYLEEEAIHSYTEFIKELDKGTIPNVPAPA 120

Query: 271 IAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           IAIDYWRLPKD+TL+DV+ V+RADEAHHRDVNHFASDI +QGK+L +A APLGYH
Sbjct: 121 IAIDYWRLPKDSTLRDVVLVVRADEAHHRDVNHFASDIHYQGKDLNEAAAPLGYH 175


>gi|125583366|gb|EAZ24297.1| hypothetical protein OsJ_08049 [Oryza sativa Japonica Group]
          Length = 175

 Score =  310 bits (795), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 145/175 (82%), Positives = 161/175 (92%)

Query: 151 MMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYE 210
           MMLETVAAVPGMVGGMLLHL+SLR+F+HSGGWI+ALLEEAENERMHLMT +E+ KP+WYE
Sbjct: 1   MMLETVAAVPGMVGGMLLHLRSLRRFEHSGGWIRALLEEAENERMHLMTFMEVAKPRWYE 60

Query: 211 RMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPA 270
           R LVL VQGVFFNA+F+ YLLSPKLAHRVVGYLEEEAIHSYTEYLKDI++G IENVPAP 
Sbjct: 61  RALVLAVQGVFFNAYFLGYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIEAGKIENVPAPP 120

Query: 271 IAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           IAIDYWRLP  ATLKDV+ V+RADEAHHRDVNHFASD+ FQG +L+D PAPL YH
Sbjct: 121 IAIDYWRLPAGATLKDVVVVVRADEAHHRDVNHFASDVHFQGMDLKDIPAPLDYH 175


>gi|302797945|ref|XP_002980733.1| hypothetical protein SELMODRAFT_112767 [Selaginella moellendorffii]
 gi|300151739|gb|EFJ18384.1| hypothetical protein SELMODRAFT_112767 [Selaginella moellendorffii]
          Length = 264

 Score =  305 bits (781), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 139/229 (60%), Positives = 172/229 (75%), Gaps = 2/229 (0%)

Query: 96  WNCFMPWET--YRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMML 153
           W  F P E     A+ SID+ KH  P  F D+ A   V  LR PTDL F++RY CRA ML
Sbjct: 5   WRAFQPSENRIIEAEGSIDVNKHRNPENFSDQFARLAVMALRFPTDLLFRQRYICRAAML 64

Query: 154 ETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERML 213
           ET++ VPGMVGGM+LH KSLR+ +HSGGWIKAL+EEAENERMHLMT +EL KP W ER L
Sbjct: 65  ETISGVPGMVGGMVLHCKSLRRVEHSGGWIKALMEEAENERMHLMTFMELSKPSWQERAL 124

Query: 214 VLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAI 273
           V T QG+F NA+F+LY++SP+ AHR+ GY+ EE I SYT+ + DID G + N PAP +AI
Sbjct: 125 VFTAQGMFMNAYFLLYVVSPRFAHRMAGYIREETIQSYTQLINDIDDGKVPNAPAPDLAI 184

Query: 274 DYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPL 322
           DYWRLP DATL+DV+ VIRADE HHR++NHFA+D+  QG  L++APA +
Sbjct: 185 DYWRLPMDATLRDVVMVIRADEIHHREINHFAADVYMQGHTLKEAPADM 233


>gi|302790461|ref|XP_002976998.1| hypothetical protein SELMODRAFT_175925 [Selaginella moellendorffii]
 gi|300155476|gb|EFJ22108.1| hypothetical protein SELMODRAFT_175925 [Selaginella moellendorffii]
          Length = 264

 Score =  302 bits (774), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 138/229 (60%), Positives = 171/229 (74%), Gaps = 2/229 (0%)

Query: 96  WNCFMPWET--YRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMML 153
           W  F P E     A+ SID+ KH  P  F D+ A   V  LR PTDL F++RY CRA ML
Sbjct: 5   WRAFQPSENRIIEAEASIDVNKHRNPENFSDQFARLAVMALRSPTDLLFRQRYICRAAML 64

Query: 154 ETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERML 213
           ET++ VPGMVGGM+LH KSLR+ +HSGGWIKAL+EEAENERMHLMT +EL KP W ER L
Sbjct: 65  ETISGVPGMVGGMVLHCKSLRRVEHSGGWIKALMEEAENERMHLMTFMELSKPSWQERAL 124

Query: 214 VLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAI 273
           V T QG+F NA+F+LY++SP+ AHR+ GY+ EE I SYT+ + DID G + N  AP +AI
Sbjct: 125 VFTAQGMFMNAYFLLYVVSPRFAHRMAGYIREETIQSYTQLINDIDDGKVPNASAPDLAI 184

Query: 274 DYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPL 322
           DYWRLP DATL+DV+ VIRADE HHR++NHFA+D+  QG  L++APA +
Sbjct: 185 DYWRLPIDATLRDVVMVIRADEIHHREINHFAADVYMQGHTLKEAPADM 233


>gi|190710539|gb|ACE95100.1| mitochondrial alternative oxidase precursor [Citrus sinensis]
          Length = 147

 Score =  301 bits (772), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 147/147 (100%), Positives = 147/147 (100%)

Query: 156 VAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVL 215
           VAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVL
Sbjct: 1   VAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVL 60

Query: 216 TVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDY 275
           TVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDY
Sbjct: 61  TVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDY 120

Query: 276 WRLPKDATLKDVITVIRADEAHHRDVN 302
           WRLPKDATLKDVITVIRADEAHHRDVN
Sbjct: 121 WRLPKDATLKDVITVIRADEAHHRDVN 147


>gi|225639906|gb|ABZ81228.2| mitochondrial alternative oxidase 1b [Daucus carota]
          Length = 170

 Score =  300 bits (769), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 136/170 (80%), Positives = 159/170 (93%)

Query: 156 VAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVL 215
           VAAVPGMVGGMLLH KSLR+F+HSGGWIKALLEEAENERMHLMT +E+ +P+WYER LV 
Sbjct: 1   VAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVSQPRWYERALVF 60

Query: 216 TVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDY 275
           TVQGVFFNA+F+ YL+SPKLAHRVVGYLEEEAIHSYTE+LK++D G+IENVPAPAIAIDY
Sbjct: 61  TVQGVFFNAYFLTYLVSPKLAHRVVGYLEEEAIHSYTEFLKELDKGTIENVPAPAIAIDY 120

Query: 276 WRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           WR+P ++TL+DV+ V+RADEAHHRDVNHFASDI +QG EL+++PAPLGYH
Sbjct: 121 WRMPPNSTLRDVVMVVRADEAHHRDVNHFASDIHYQGHELKESPAPLGYH 170


>gi|452823408|gb|EME30419.1| mitochondrial alternative oxidase [Galdieria sulphuraria]
          Length = 364

 Score =  300 bits (767), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 150/278 (53%), Positives = 191/278 (68%), Gaps = 7/278 (2%)

Query: 49  VMMSSYSSSSESVPEKVKEKG---ENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETY 105
           +  +SY   S S  E+  ++G   E  I P  Y  +      R+   PW W  F+P  TY
Sbjct: 71  IQRASYPLWSRSYSEQKTQQGSQVEEPITP--YQPVVENLDKRDPKYPWKWRSFLPEHTY 128

Query: 106 RADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGG 165
           + +LSIDL++HH P  F D+VA   VK LR   D FFQ+RYG RA++LETVAAVPGMVGG
Sbjct: 129 KPNLSIDLQRHHTPLDFRDRVALGIVKFLRFFADAFFQKRYGHRAVVLETVAAVPGMVGG 188

Query: 166 MLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAF 225
           ML H + LR+F  SGGWI+ LL+EAENERMHL+T + + KP ++ER+LVL  QG FF  +
Sbjct: 189 MLTHFRCLRRFAPSGGWIRVLLDEAENERMHLVTFMSIAKPNYFERLLVLITQGGFFAFY 248

Query: 226 FVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLK 285
            ++Y+LSPK AHR+VGYLEEEAI SYTEYLK IDSG   N+PAP IAIDYW+L  DA L+
Sbjct: 249 TMIYILSPKTAHRIVGYLEEEAIISYTEYLKGIDSGLHANIPAPQIAIDYWQLDSDARLR 308

Query: 286 DVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLG 323
           DV+  +RADEA+HRDVNH  +++ +      D PAPL 
Sbjct: 309 DVVLAVRADEANHRDVNHLKANLLYTKHG--DEPAPLS 344


>gi|125583367|gb|EAZ24298.1| hypothetical protein OsJ_08050 [Oryza sativa Japonica Group]
          Length = 325

 Score =  296 bits (759), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 152/226 (67%), Positives = 170/226 (75%), Gaps = 16/226 (7%)

Query: 100 MPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAV 159
           +PWETY  D +IDLKKHH P   LDKVAY TVK LR+PTD+FF                V
Sbjct: 116 VPWETYSPDTTIDLKKHHEPKVLLDKVAYWTVKALRVPTDIFFPEE-----------VRV 164

Query: 160 PGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQG 219
           P             R  +  GGWI+ALLEEAENERMHLMT +E+ KP+WYER LVL VQG
Sbjct: 165 PRDDA-----GDGGRGCRGCGGWIRALLEEAENERMHLMTFMEVAKPRWYERALVLAVQG 219

Query: 220 VFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLP 279
           VFFNA+F+ YLLSPKLAHRVVGYLEEEAIHSYTEYLKDI++G IENVPAP IAIDYWRLP
Sbjct: 220 VFFNAYFLGYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIEAGKIENVPAPPIAIDYWRLP 279

Query: 280 KDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
             ATLKDV+ V+RADEAHHRDVNHFASD+ FQG +L+D PAPL YH
Sbjct: 280 AGATLKDVVVVVRADEAHHRDVNHFASDVHFQGMDLKDIPAPLDYH 325


>gi|297789037|ref|XP_002862531.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297308108|gb|EFH38789.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 334

 Score =  296 bits (758), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 160/294 (54%), Positives = 191/294 (64%), Gaps = 43/294 (14%)

Query: 46  RMMVMMSSYSSSSESVPEKVKEKGENGIVPSSYWGI--SRPKITREDGSPWPWNCFMPWE 103
           R M   S+  +  E+   K  + G   +   SYWGI  ++ KITR+DGS WPWNCFMPWE
Sbjct: 70  RRMSSASATENKDENSTVKKDQNGGGSVAVPSYWGIETAKMKITRKDGSDWPWNCFMPWE 129

Query: 104 TYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLF--FQRRYGCRAM---------- 151
           TY+A+LSIDLKKHHVP            +  R+P      +  RY    M          
Sbjct: 130 TYQANLSIDLKKHHVPN-----------RQNRLPDSQAPPYSHRYIFPGMTLTIWMQSND 178

Query: 152 MLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYER 211
           MLETVAAVPGMVGGMLLHLKS+RKF+HSGGWIKALLEEAENERMHLMTM+ELVKPKWYER
Sbjct: 179 MLETVAAVPGMVGGMLLHLKSIRKFEHSGGWIKALLEEAENERMHLMTMMELVKPKWYER 238

Query: 212 MLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAI 271
           +LV+ VQG+FFN+F V Y++SP+LAHR+                     G    +P P +
Sbjct: 239 LLVMLVQGIFFNSFLVCYVMSPRLAHRISTM------------------GRSRMLPRPRL 280

Query: 272 AIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
            +      K    KDV+TVIRADEAHHRDVNHFASDI+ QGKELR+A AP+GYH
Sbjct: 281 LLIIGDCLKMLRWKDVVTVIRADEAHHRDVNHFASDIRNQGKELREAGAPIGYH 334


>gi|452821862|gb|EME28887.1| mitochondrial alternative oxidase [Galdieria sulphuraria]
          Length = 355

 Score =  293 bits (750), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 135/227 (59%), Positives = 172/227 (75%)

Query: 93  PWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMM 152
           PW W  F+P  TY+ +L +DL +HH P  F DKVA + VK LR+  D FF++RYG RA++
Sbjct: 107 PWKWRSFLPEHTYKPNLKVDLTRHHDPIDFRDKVAQKVVKFLRVFADAFFRKRYGHRAVV 166

Query: 153 LETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERM 212
           LETVAAVPGMVGGML HL+SLR+F+ SGGWI+ LLEEAENERMHLMT + + KP   ER 
Sbjct: 167 LETVAAVPGMVGGMLQHLQSLRRFKPSGGWIRVLLEEAENERMHLMTFMAIAKPTILERA 226

Query: 213 LVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIA 272
           LVL  QG FF  +  +Y+LSPK AHR+VGYLEEEAI SYT+YL++ID G+  N+PAP IA
Sbjct: 227 LVLLTQGGFFAFYAFIYILSPKTAHRIVGYLEEEAIISYTQYLQEIDKGTHANIPAPEIA 286

Query: 273 IDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAP 319
           IDYW++ K A L+DV+  +RADEAHHRDVNH  +++ ++ +    AP
Sbjct: 287 IDYWQMDKGARLRDVVLAVRADEAHHRDVNHLKANLLYKKRYSEPAP 333


>gi|449016571|dbj|BAM79973.1| mitochondrial alternative oxidase [Cyanidioschyzon merolae strain
           10D]
          Length = 383

 Score =  292 bits (747), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 140/229 (61%), Positives = 173/229 (75%), Gaps = 3/229 (1%)

Query: 93  PWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMM 152
           PW W+ F+P  TY+ +L++DLK+H  PT F D+ AY TVK LR   D FFQRRYG RA++
Sbjct: 142 PWKWHSFLPEHTYKPNLNVDLKRHVQPTGFSDRFAYYTVKFLRFFADAFFQRRYGHRAVV 201

Query: 153 LETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERM 212
           LETVAAVPGMVGGM+LHL+ LR+F+ SGGWI+ LLEEAENERMHLM  + + +P+  ER 
Sbjct: 202 LETVAAVPGMVGGMMLHLQCLRRFRQSGGWIRVLLEEAENERMHLMVYMSIAQPRALERA 261

Query: 213 LVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIA 272
           LV+  Q  FF+ + +LY +SPK AHR+VGYLEEEAI SYTEYLKDID G I N+PAP IA
Sbjct: 262 LVILAQAGFFSFYTLLYTISPKTAHRLVGYLEEEAIVSYTEYLKDIDDGRIPNIPAPPIA 321

Query: 273 IDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAP 321
           IDYW+L  +A L+DV+   RADEAHHRDVNH  +++    K  R  PAP
Sbjct: 322 IDYWQLDPNARLRDVVLATRADEAHHRDVNHLRANLI---KAHRGDPAP 367


>gi|126572031|gb|ABO21612.1| mitochondrial alternative oxidase [Cucurbita pepo]
          Length = 147

 Score =  290 bits (743), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 139/147 (94%), Positives = 144/147 (97%)

Query: 155 TVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLV 214
           TVAAVPGMVGGMLLHLKSLR+FQHSGGWIKALLEEAENERMHLMTM+ELV+PKWYERMLV
Sbjct: 1   TVAAVPGMVGGMLLHLKSLRRFQHSGGWIKALLEEAENERMHLMTMIELVQPKWYERMLV 60

Query: 215 LTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAID 274
           +TVQGVFFNAFFVLYL+SPKLAHRVVGYLEEEAIHSYTEYLKDID G IENVPAPAIAID
Sbjct: 61  ITVQGVFFNAFFVLYLMSPKLAHRVVGYLEEEAIHSYTEYLKDIDEGKIENVPAPAIAID 120

Query: 275 YWRLPKDATLKDVITVIRADEAHHRDV 301
           YWRLPKDA LKDVITVIRADEAHHRDV
Sbjct: 121 YWRLPKDARLKDVITVIRADEAHHRDV 147


>gi|208436640|gb|ACI28866.1| mitochondrial alternative oxidase 2, partial [Vitis vinifera]
          Length = 143

 Score =  283 bits (725), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 137/143 (95%), Positives = 141/143 (98%)

Query: 157 AAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLT 216
           AAVPGMVGGMLLHL+SLRKF+ SGGWIKALLEEAENERMHLMTMVELV+PKWYER+LVLT
Sbjct: 1   AAVPGMVGGMLLHLRSLRKFEQSGGWIKALLEEAENERMHLMTMVELVQPKWYERVLVLT 60

Query: 217 VQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYW 276
           VQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSG IENVPAPAIAIDYW
Sbjct: 61  VQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGKIENVPAPAIAIDYW 120

Query: 277 RLPKDATLKDVITVIRADEAHHR 299
           RLPKDATLKDVITVIRADEAHHR
Sbjct: 121 RLPKDATLKDVITVIRADEAHHR 143


>gi|257481064|gb|ACV60641.1| mitochondrial alternative oxidase 2 [Pinus pinea]
          Length = 147

 Score =  279 bits (713), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 133/147 (90%), Positives = 142/147 (96%)

Query: 156 VAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVL 215
           VAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELV+PKW+ER+LVL
Sbjct: 1   VAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVQPKWHERLLVL 60

Query: 216 TVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDY 275
            VQGVFFNAFFVLY+LSPKLAHR+VGYLEEEAIHS+TEYLKDID G IENVPAPAI+IDY
Sbjct: 61  AVQGVFFNAFFVLYILSPKLAHRIVGYLEEEAIHSHTEYLKDIDRGLIENVPAPAISIDY 120

Query: 276 WRLPKDATLKDVITVIRADEAHHRDVN 302
           WRLP+DA L+DVI VIRADEAHHRDVN
Sbjct: 121 WRLPQDAKLRDVILVIRADEAHHRDVN 147


>gi|14599480|gb|AAK70938.1| alternative oxidase 2 [Mangifera indica]
          Length = 144

 Score =  276 bits (707), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 131/144 (90%), Positives = 141/144 (97%)

Query: 153 LETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERM 212
           LETVAAVPGMVGGMLLHLKSLRK + SGGWIKALLEEAENERMHLMTMVELV+PKWYER+
Sbjct: 1   LETVAAVPGMVGGMLLHLKSLRKLEQSGGWIKALLEEAENERMHLMTMVELVQPKWYERL 60

Query: 213 LVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIA 272
           LVL VQGVFFN+FFVLY+LSPKLAHR+VGYLEEEAIHSYTEYLKDIDSG+I+N+PAPAIA
Sbjct: 61  LVLAVQGVFFNSFFVLYVLSPKLAHRIVGYLEEEAIHSYTEYLKDIDSGAIKNIPAPAIA 120

Query: 273 IDYWRLPKDATLKDVITVIRADEA 296
           IDYWRLPKDATLKDVITV+RADEA
Sbjct: 121 IDYWRLPKDATLKDVITVVRADEA 144


>gi|170674867|gb|ACB30184.1| mitochondrial alternative oxidase 2 [Hypericum perforatum]
          Length = 147

 Score =  275 bits (703), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 130/147 (88%), Positives = 141/147 (95%)

Query: 156 VAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVL 215
           VAAVPGMVGGMLLHL+SLRKF+ +GGW+KALLEEAENERMHLMTMVELV+PKWYERMLVL
Sbjct: 1   VAAVPGMVGGMLLHLRSLRKFEQTGGWVKALLEEAENERMHLMTMVELVQPKWYERMLVL 60

Query: 216 TVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDY 275
            VQG+FFNA+FV+YL+SPKLAHRV GYLEEEAIHSYTEYLKDI SG IENV APAIAIDY
Sbjct: 61  IVQGLFFNAYFVIYLVSPKLAHRVTGYLEEEAIHSYTEYLKDIRSGKIENVKAPAIAIDY 120

Query: 276 WRLPKDATLKDVITVIRADEAHHRDVN 302
           WRLPK+ATL+DVITVIRADEAHHRDVN
Sbjct: 121 WRLPKEATLEDVITVIRADEAHHRDVN 147


>gi|336451471|ref|ZP_08621909.1| Alternative oxidase [Idiomarina sp. A28L]
 gi|336281842|gb|EGN75114.1| Alternative oxidase [Idiomarina sp. A28L]
          Length = 210

 Score =  274 bits (701), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 128/196 (65%), Positives = 154/196 (78%), Gaps = 1/196 (0%)

Query: 115 KHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLR 174
           KHH P    D++AY TV+ LR   DLFF  RYG RA++LETVAAVPGMVGG + HL SLR
Sbjct: 10  KHHKPQGISDRIAYGTVRFLRFFADLFFSGRYGNRAVVLETVAAVPGMVGGAIQHLHSLR 69

Query: 175 KFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPK 234
           + ++  GWI  LLEEAENERMHL+T +E+ KP W ER LV+  QG+F+NAFFVLYL S K
Sbjct: 70  RMKNDDGWIHTLLEEAENERMHLLTFIEVAKPNWLERTLVIIAQGIFYNAFFVLYLFSSK 129

Query: 235 LAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRAD 294
            AHRVVGYLEEEA++SYTEYL  +DSG  ENVPAP IAIDYW+LP+DA L++VI  +RAD
Sbjct: 130 TAHRVVGYLEEEAVYSYTEYLAGVDSGKYENVPAPQIAIDYWQLPEDARLREVIIAVRAD 189

Query: 295 EAHHRDVNH-FASDIQ 309
           EA HRDVNH FA +++
Sbjct: 190 EAKHRDVNHGFADELK 205


>gi|2811176|gb|AAB97839.1| alternative oxidase, partial [Zea mays]
          Length = 149

 Score =  264 bits (675), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 123/149 (82%), Positives = 139/149 (93%)

Query: 150 AMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWY 209
           AMMLETVAAVPGMVGGMLLHL+SLR+F+ SGGWI+ALLEEAENERMHLMT +E+ KP+WY
Sbjct: 1   AMMLETVAAVPGMVGGMLLHLRSLRRFEQSGGWIRALLEEAENERMHLMTFMEVAKPRWY 60

Query: 210 ERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAP 269
           ER LV+TVQGVFFNA+F+ YLLSPK AHRVVGYLEEEAIHSYTEYLKD+++G IE  PAP
Sbjct: 61  ERALVITVQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAIHSYTEYLKDLEAGKIEKRPAP 120

Query: 270 AIAIDYWRLPKDATLKDVITVIRADEAHH 298
           AIAIDYWRLP +ATLKDV+TV+RADEAHH
Sbjct: 121 AIAIDYWRLPANATLKDVVTVVRADEAHH 149


>gi|408797922|gb|AFU92145.1| mitochondrial alternative oxidase 1, partial [Araucaria
           angustifolia]
          Length = 147

 Score =  264 bits (675), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 120/147 (81%), Positives = 138/147 (93%)

Query: 156 VAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVL 215
           VAAVPGMVGGMLLH KSLRKFQHSGGWIKALLEEAENERMHLMT +E+ KP+WYER LV 
Sbjct: 1   VAAVPGMVGGMLLHCKSLRKFQHSGGWIKALLEEAENERMHLMTFMEVAKPRWYERALVF 60

Query: 216 TVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDY 275
           TVQGVFFNA+F+LY++SPKLAHR+VGYLEEEA HSYTE+LK++D G+I NVPAPAIAIDY
Sbjct: 61  TVQGVFFNAYFILYMISPKLAHRIVGYLEEEATHSYTEFLKELDDGNIPNVPAPAIAIDY 120

Query: 276 WRLPKDATLKDVITVIRADEAHHRDVN 302
           W+LPKD+TL+DV+ +I+ADEAHHRDVN
Sbjct: 121 WKLPKDSTLRDVVMIIKADEAHHRDVN 147


>gi|399545055|ref|YP_006558363.1| alternative oxidase [Marinobacter sp. BSs20148]
 gi|399160387|gb|AFP30950.1| Alternative oxidase [Marinobacter sp. BSs20148]
          Length = 215

 Score =  263 bits (673), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 120/195 (61%), Positives = 154/195 (78%)

Query: 113 LKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKS 172
           L KHH P+ F D+VA+R  +LLR   DLFF +RYG RA++LETVAAVPGMVGGM+ H++S
Sbjct: 17  LSKHHTPSGFSDRVAFRLTRLLRFFADLFFAKRYGHRAVVLETVAAVPGMVGGMVGHMRS 76

Query: 173 LRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLS 232
           LR+ + +  WI  LLEEAENERMHLMT V++ +P + ER+L+L  QG+FF +F  LY++S
Sbjct: 77  LRRMEDNREWIHTLLEEAENERMHLMTFVQIAQPSFLERVLILLAQGIFFTSFLFLYIVS 136

Query: 233 PKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIR 292
            + AHR+VGY EEEA++SY EYL ++DSG +ENV AP IAIDYW+LP DATL+DVI V+R
Sbjct: 137 GRTAHRLVGYFEEEAVYSYGEYLAEVDSGRLENVAAPQIAIDYWKLPADATLRDVIIVVR 196

Query: 293 ADEAHHRDVNHFASD 307
            DEA HRDVNH  +D
Sbjct: 197 LDEAGHRDVNHRFAD 211


>gi|410620808|ref|ZP_11331666.1| alternative oxidase 2, mitochondrial [Glaciecola pallidula DSM
           14239 = ACAM 615]
 gi|410159691|dbj|GAC27040.1| alternative oxidase 2, mitochondrial [Glaciecola pallidula DSM
           14239 = ACAM 615]
          Length = 214

 Score =  262 bits (670), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 119/195 (61%), Positives = 153/195 (78%)

Query: 113 LKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKS 172
           L KHH P+ F D++A+R  KLLR   DLFF +RYG RA++LETVAAVPGMVGGM+ H++S
Sbjct: 17  LSKHHTPSGFSDRLAFRLTKLLRFFADLFFAKRYGHRAVVLETVAAVPGMVGGMIRHMRS 76

Query: 173 LRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLS 232
           LR+ +     I  LLEEAENERMHL+T V++ +P ++ERML+L  QGVFF +F  LY++S
Sbjct: 77  LRRMKDDREAIHTLLEEAENERMHLLTFVQIAQPSFFERMLILLAQGVFFTSFLFLYVVS 136

Query: 233 PKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIR 292
            + AHR+VGY EEEA++SY+EYL ++DSG +ENV AP IAIDYW+LP DATL+DVI  +R
Sbjct: 137 GRTAHRLVGYFEEEAVYSYSEYLAEVDSGRLENVNAPQIAIDYWKLPADATLRDVIIAVR 196

Query: 293 ADEAHHRDVNHFASD 307
            DEA HRDVNH  +D
Sbjct: 197 NDEAGHRDVNHQFAD 211


>gi|387130678|ref|YP_006293568.1| oxidase [Methylophaga sp. JAM7]
 gi|386271967|gb|AFJ02881.1| putative oxidase [Methylophaga sp. JAM7]
          Length = 206

 Score =  261 bits (666), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 120/200 (60%), Positives = 152/200 (76%), Gaps = 1/200 (0%)

Query: 113 LKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKS 172
           L  H+ P    D++A R VK +R   D FF  RYG RA++LETVAAVPGMVGG L HL+S
Sbjct: 7   LHSHYQPQCLSDRIALRVVKFMRFFADAFFSGRYGHRAVVLETVAAVPGMVGGALQHLRS 66

Query: 173 LRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLS 232
           LR+ Q   GWI+ LL+EAENERMHLMT + + KP W ER++++  QGVF+N FF+LYL S
Sbjct: 67  LRRMQDDEGWIRTLLDEAENERMHLMTFIHIAKPSWLERLIIIIAQGVFYNLFFLLYLFS 126

Query: 233 PKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIR 292
            K+AHR+VGYLEEEA++SYTEYL  +D G+ +N+PAP IAIDYW+LP +A L+DVI  +R
Sbjct: 127 SKVAHRIVGYLEEEAVYSYTEYLNGVDDGTYDNIPAPQIAIDYWQLPDNARLRDVILKVR 186

Query: 293 ADEAHHRDVNH-FASDIQFQ 311
            DEA HRDVNH FA+ +Q Q
Sbjct: 187 DDEAGHRDVNHNFANTLQNQ 206


>gi|77362686|dbj|BAE46391.1| alternative oxidase [Phaseolus vulgaris]
          Length = 151

 Score =  261 bits (666), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 126/151 (83%), Positives = 133/151 (88%)

Query: 151 MMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYE 210
           MMLETVAAVPGMVGGMLLHL SL KFQHSGGWIKAL+EEAENERMHLMTMVELV PKW E
Sbjct: 1   MMLETVAAVPGMVGGMLLHLXSLXKFQHSGGWIKALMEEAENERMHLMTMVELVXPKWXE 60

Query: 211 RMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPA 270
           R+LVL  QGVFFN FF LY+LSP  AHR+VGY EEEAI SYT+YLK I+ G+ ENVPAPA
Sbjct: 61  RLLVLAXQGVFFNXFFALYILSPXAAHRIVGYXEEEAIXSYTQYLKXIERGAXENVPAPA 120

Query: 271 IAIDYWRLPKDATLKDVITVIRADEAHHRDV 301
           IAIDYWRLPKDA  K VITVIRADEAHHRDV
Sbjct: 121 IAIDYWRLPKDAXXKXVITVIRADEAHHRDV 151


>gi|149200905|ref|ZP_01877880.1| putative oxidase [Roseovarius sp. TM1035]
 gi|149145238|gb|EDM33264.1| putative oxidase [Roseovarius sp. TM1035]
          Length = 217

 Score =  260 bits (665), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 120/209 (57%), Positives = 156/209 (74%), Gaps = 1/209 (0%)

Query: 101 PWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVP 160
           P   +  D +  L+ HH P    D++A R VK++R+  D FF +RYG RA++LETVAAVP
Sbjct: 3   PERQFETDETATLEVHHSPRDIHDRIALRIVKIMRVFADAFFSKRYGHRAVVLETVAAVP 62

Query: 161 GMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGV 220
           GMVGG+L HLKSLR  +   GWI+ LL+EAENERMHLMT V++ +P   ER L++  Q +
Sbjct: 63  GMVGGLLQHLKSLRHIREDQGWIRELLDEAENERMHLMTFVQIAQPSRGERWLIMIAQAI 122

Query: 221 FFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPK 280
           F+N FF  YLL+P+ AHR+VGYLEEEA+ SYT+YL +ID+G  +NVPAP IAIDYW+L +
Sbjct: 123 FYNVFFFTYLLAPRTAHRIVGYLEEEAVVSYTQYLAEIDAGRQDNVPAPQIAIDYWKLSQ 182

Query: 281 DATLKDVITVIRADEAHHRDVNH-FASDI 308
           DA L+DV+  +RADEAHHRD NH FA+ I
Sbjct: 183 DARLRDVVIAVRADEAHHRDTNHGFANQI 211


>gi|389730180|ref|ZP_10189355.1| alternative oxidase [Rhodanobacter sp. 115]
 gi|388440952|gb|EIL97272.1| alternative oxidase [Rhodanobacter sp. 115]
          Length = 232

 Score =  259 bits (663), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 123/210 (58%), Positives = 156/210 (74%), Gaps = 1/210 (0%)

Query: 101 PWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVP 160
           P  + + +  I L +HH P    D++A+  VK LR   D FF +RYG RA++LETVAAVP
Sbjct: 10  PKRSPQPEEQISLTRHHEPRGARDRIAFGFVKFLRFIADTFFAKRYGHRAVVLETVAAVP 69

Query: 161 GMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGV 220
           GMVG  L HL+ LR+ +   GWI  LL+EAENERMHLMT + +++P W+ER++V+ VQG+
Sbjct: 70  GMVGATLQHLRCLRRMRDDDGWIYTLLDEAENERMHLMTFMAIIRPTWFERVVVVIVQGI 129

Query: 221 FFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPK 280
           F+NAFF+LYL SP+ AHRVVGY EEEA+ SY  YL  IDSG+ ENVPAP +AIDYW LP 
Sbjct: 130 FYNAFFLLYLCSPRTAHRVVGYFEEEAVISYNHYLAQIDSGADENVPAPHVAIDYWSLPA 189

Query: 281 DATLKDVITVIRADEAHHRDVNH-FASDIQ 309
           DA L+DVI +IRA+EA HRDVNH FA  +Q
Sbjct: 190 DARLRDVIVIIRAEEAMHRDVNHGFADTLQ 219


>gi|254490126|ref|ZP_05103317.1| Alternative oxidase superfamily [Methylophaga thiooxidans DMS010]
 gi|224464612|gb|EEF80870.1| Alternative oxidase superfamily [Methylophaga thiooxydans DMS010]
          Length = 207

 Score =  258 bits (660), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 119/195 (61%), Positives = 151/195 (77%), Gaps = 1/195 (0%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRK 175
           HH P+ F D++A R VK +R   D FF  RYG RA++LETVAAVPGMVGG L HL+SLR+
Sbjct: 10  HHQPSCFSDRLALRIVKFMRFFADAFFSGRYGHRAVILETVAAVPGMVGGALQHLRSLRR 69

Query: 176 FQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKL 235
            +   GWI+ LL+EAENERMHL+T + + KP  +ER+LV+  QGVF+N FF+LYL S ++
Sbjct: 70  MKDDDGWIETLLDEAENERMHLLTFIHIAKPNMFERLLVIITQGVFYNLFFLLYLCSSRV 129

Query: 236 AHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADE 295
           AHR+VGYLEEEA++SYTEYL  +D+G  ENVPAP IAIDYW+LP DA L+DV+  +R DE
Sbjct: 130 AHRIVGYLEEEAVYSYTEYLNGVDNGQYENVPAPQIAIDYWQLPADARLRDVLLKVRDDE 189

Query: 296 AHHRDVNH-FASDIQ 309
           A HRDVNH FA+ + 
Sbjct: 190 AKHRDVNHDFANQLN 204


>gi|257481048|gb|ACV60633.1| mitochondrial alternative oxidase 1a [Pinus pinea]
 gi|257481052|gb|ACV60635.1| mitochondrial alternative oxidase 1a [Pinus pinea]
 gi|257481056|gb|ACV60637.1| mitochondrial alternative oxidase 1a [Pinus pinea]
 gi|257481058|gb|ACV60638.1| mitochondrial alternative oxidase 1a [Pinus pinea]
          Length = 147

 Score =  258 bits (659), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 118/147 (80%), Positives = 136/147 (92%)

Query: 156 VAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVL 215
           VAAVPGMVGGMLLH KSLR+F+HSGGWIK LL+EAENERMHLMT +E+ +P+WYER LV 
Sbjct: 1   VAAVPGMVGGMLLHCKSLRRFEHSGGWIKTLLDEAENERMHLMTFMEVSQPRWYERALVF 60

Query: 216 TVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDY 275
           TVQGVFFNA+F+ YL SPKLAHRVVGYLEEEAI+SYTE+LK++D G+IENVPAPAIAIDY
Sbjct: 61  TVQGVFFNAYFLAYLASPKLAHRVVGYLEEEAIYSYTEFLKELDKGTIENVPAPAIAIDY 120

Query: 276 WRLPKDATLKDVITVIRADEAHHRDVN 302
           WRLP D+TL+DV+ V+RADEAHHRDVN
Sbjct: 121 WRLPADSTLRDVVMVVRADEAHHRDVN 147


>gi|170674869|gb|ACB30185.1| mitochondrial alternative oxidase 1a [Hypericum perforatum]
          Length = 147

 Score =  257 bits (657), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 118/147 (80%), Positives = 136/147 (92%)

Query: 156 VAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVL 215
           VAAVPGMVGGMLLH KSLR+F HS GWIKALLEEAENERMHLMT +E+ +P+WYER LV 
Sbjct: 1   VAAVPGMVGGMLLHCKSLRRFGHSAGWIKALLEEAENERMHLMTFMEVSQPRWYERALVF 60

Query: 216 TVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDY 275
           TVQGVFFNA+F+ YL+SPKLAHRVVGYLEEEAIHSYTE+LK++D G+IENVPAPAIAIDY
Sbjct: 61  TVQGVFFNAYFLTYLVSPKLAHRVVGYLEEEAIHSYTEFLKELDKGTIENVPAPAIAIDY 120

Query: 276 WRLPKDATLKDVITVIRADEAHHRDVN 302
           WR+P ++TL+DV+ V+RADEAHHRDVN
Sbjct: 121 WRMPPNSTLRDVVMVVRADEAHHRDVN 147


>gi|257481046|gb|ACV60632.1| mitochondrial alternative oxidase 1a [Pinus pinea]
          Length = 147

 Score =  257 bits (656), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 117/147 (79%), Positives = 136/147 (92%)

Query: 156 VAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVL 215
           VAAVPGMVGGMLLH KSLR+F+HSGGWI+ LL+EAENERMHLMT +E+ +P+WYER LV 
Sbjct: 1   VAAVPGMVGGMLLHCKSLRRFEHSGGWIRTLLDEAENERMHLMTFMEVSQPRWYERALVF 60

Query: 216 TVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDY 275
           TVQGVFFNA+F+ YL SPKLAHRVVGYLEEEAI+SYTE+LK++D G+IENVPAPAIAIDY
Sbjct: 61  TVQGVFFNAYFLAYLASPKLAHRVVGYLEEEAIYSYTEFLKELDKGTIENVPAPAIAIDY 120

Query: 276 WRLPKDATLKDVITVIRADEAHHRDVN 302
           WRLP D+TL+DV+ V+RADEAHHRDVN
Sbjct: 121 WRLPADSTLRDVVMVVRADEAHHRDVN 147


>gi|170674871|gb|ACB30186.1| mitochondrial alternative oxidase 1b [Hypericum perforatum]
          Length = 147

 Score =  256 bits (655), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 117/147 (79%), Positives = 135/147 (91%)

Query: 156 VAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVL 215
           VAAVPGMVGGMLLH KSLR+F+HSGGWIK LL+EAENERMHLMT +E+ KPKWYER LV 
Sbjct: 1   VAAVPGMVGGMLLHCKSLRRFEHSGGWIKTLLDEAENERMHLMTFMEVAKPKWYERALVF 60

Query: 216 TVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDY 275
           TVQG FFN +F+ YL+SPK AHRVVGYLEEEAIHSYTE+LK++D+G+IENVPAPAIA+DY
Sbjct: 61  TVQGAFFNIYFLGYLISPKFAHRVVGYLEEEAIHSYTEFLKELDNGNIENVPAPAIAVDY 120

Query: 276 WRLPKDATLKDVITVIRADEAHHRDVN 302
           WRLP ++TLKDV+ V+RADEAHHRDVN
Sbjct: 121 WRLPPNSTLKDVVQVVRADEAHHRDVN 147


>gi|85710461|ref|ZP_01041525.1| putative oxidase [Erythrobacter sp. NAP1]
 gi|85687639|gb|EAQ27644.1| putative oxidase [Erythrobacter sp. NAP1]
          Length = 232

 Score =  256 bits (654), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 121/192 (63%), Positives = 148/192 (77%)

Query: 112 DLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLK 171
           D+  H  P +  D VA+  VKLLR   D FF RRYG RA++LETVAAVPGMVGG+L HL+
Sbjct: 18  DVTSHVAPQSKSDHVAFAFVKLLRFFADTFFARRYGHRAVVLETVAAVPGMVGGLLQHLR 77

Query: 172 SLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLL 231
           +LR+ +   GWI+ LL+EAENERMHLMT +E+ KP  +ER L+L+VQ VF+N +F LYLL
Sbjct: 78  ALRRMRDDEGWIRTLLDEAENERMHLMTFIEIAKPNAFERFLILSVQLVFYNFYFFLYLL 137

Query: 232 SPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVI 291
           +P+ AHRVVGY EEEA+ SYT YLK+++SG  ENVPAP IAIDYW+L  DA L DVI  +
Sbjct: 138 APRTAHRVVGYFEEEAVISYTAYLKEVESGRHENVPAPQIAIDYWQLHSDARLSDVIIAV 197

Query: 292 RADEAHHRDVNH 303
           RADEA HRDVNH
Sbjct: 198 RADEAEHRDVNH 209


>gi|393726239|ref|ZP_10346166.1| alternative oxidase [Sphingomonas sp. PAMC 26605]
          Length = 237

 Score =  256 bits (653), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 133/212 (62%), Positives = 154/212 (72%), Gaps = 5/212 (2%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRK 175
           HHVP  F D+ A    KLLR   D+FF +RYG RA++LETVAAVPGMVG M  HLK LR 
Sbjct: 24  HHVPHGFADQFALGFTKLLRFCADIFFAKRYGHRAIVLETVAAVPGMVGAMFTHLKCLRW 83

Query: 176 FQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKL 235
            +   GWI+ L+EEAENERMHLMT VE+ KP W+ER ++L VQGVF  AF +LYLLS K 
Sbjct: 84  MRDDQGWIRTLMEEAENERMHLMTFVEIAKPTWFERTVILLVQGVFLIAFSLLYLLSAKT 143

Query: 236 AHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADE 295
           AHRVVGY EEEA+ SYT YL++ID G   NVPAPAIA  YW++  DATL+DV+ V+R DE
Sbjct: 144 AHRVVGYFEEEAVTSYTLYLQEIDEGRSPNVPAPAIARHYWKMADDATLRDVVLVVRDDE 203

Query: 296 AHHRDVNH-FASDIQFQGKELRD-APAPLGYH 325
           AHHRDVNH FAS I   G  LRD A AP   H
Sbjct: 204 AHHRDVNHDFASTI---GGLLRDRASAPYPPH 232


>gi|257481044|gb|ACV60631.1| mitochondrial alternative oxidase 1a [Pinus pinea]
          Length = 147

 Score =  255 bits (652), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 117/147 (79%), Positives = 135/147 (91%)

Query: 156 VAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVL 215
           VAAVPGMVGGMLLH KSLR+F+HSGGWIK LL+EAENERMHLMT +E+ +P+WYER LV 
Sbjct: 1   VAAVPGMVGGMLLHCKSLRRFEHSGGWIKTLLDEAENERMHLMTFMEVSQPRWYERALVF 60

Query: 216 TVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDY 275
           TVQGVFFNA+F+ YL SPKLAHRVVGYLEEEAI+SYTE+LK++D G+IENVPAPAIAIDY
Sbjct: 61  TVQGVFFNAYFLAYLASPKLAHRVVGYLEEEAIYSYTEFLKELDKGTIENVPAPAIAIDY 120

Query: 276 WRLPKDATLKDVITVIRADEAHHRDVN 302
           WRLP D+TL+DV+ V+RA EAHHRDVN
Sbjct: 121 WRLPADSTLRDVVMVVRAGEAHHRDVN 147


>gi|85704383|ref|ZP_01035485.1| putative oxidase [Roseovarius sp. 217]
 gi|85670791|gb|EAQ25650.1| putative oxidase [Roseovarius sp. 217]
          Length = 221

 Score =  254 bits (650), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 119/212 (56%), Positives = 154/212 (72%), Gaps = 1/212 (0%)

Query: 98  CFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVA 157
           C     +++ D + DL  HH P    D+VA R VK +RI  D FF +RYG RA++LETVA
Sbjct: 4   CTKSEMSFQHDDTTDLDVHHTPRDIHDRVALRIVKFMRIFADAFFSKRYGHRAVVLETVA 63

Query: 158 AVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTV 217
           AVPGMVGG+L HLKS+R  +   GWI+ LL+EAENERMHLMT + + +P   ERML++  
Sbjct: 64  AVPGMVGGLLRHLKSIRHIRDDQGWIRELLDEAENERMHLMTFIHIAQPSRAERMLIMVA 123

Query: 218 QGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWR 277
           Q +F+N FF  YL +P+ AHR+VGYLEEEA+ SYT+YL +ID+G  ENV AP IAIDYW 
Sbjct: 124 QMIFYNVFFFTYLFAPRTAHRIVGYLEEEAVVSYTQYLAEIDAGGQENVAAPQIAIDYWN 183

Query: 278 LPKDATLKDVITVIRADEAHHRDVNH-FASDI 308
           L  DA L+DV+  +R+DEA+HRD NH FA++I
Sbjct: 184 LGADARLRDVVIRVRSDEAYHRDTNHRFANEI 215


>gi|257481054|gb|ACV60636.1| mitochondrial alternative oxidase 1a [Pinus pinea]
          Length = 147

 Score =  254 bits (649), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 117/147 (79%), Positives = 134/147 (91%)

Query: 156 VAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVL 215
           VAAVPGMVGGMLLH KSLR+F+HSGGWIK LL+EAENERMHLMT +E+ +P+WYER LV 
Sbjct: 1   VAAVPGMVGGMLLHCKSLRRFEHSGGWIKTLLDEAENERMHLMTFMEVSQPRWYERALVF 60

Query: 216 TVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDY 275
           TVQGVFFNA+F+ YL SPKLAHRVVGYLEEEAI+SYTE+LK++D G+IENVPA AIAIDY
Sbjct: 61  TVQGVFFNAYFLAYLASPKLAHRVVGYLEEEAIYSYTEFLKELDKGTIENVPASAIAIDY 120

Query: 276 WRLPKDATLKDVITVIRADEAHHRDVN 302
           WRLP D+TL+DV+ V RADEAHHRDVN
Sbjct: 121 WRLPADSTLRDVVMVARADEAHHRDVN 147


>gi|257481062|gb|ACV60640.1| mitochondrial alternative oxidase 1b [Pinus pinea]
          Length = 144

 Score =  254 bits (648), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 119/144 (82%), Positives = 135/144 (93%)

Query: 157 AAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLT 216
           AAVPGMVGGMLLH KSLRKFQHSGGWIKALLEEAENERMHLMT +E+ KPKWYER LV T
Sbjct: 1   AAVPGMVGGMLLHCKSLRKFQHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFT 60

Query: 217 VQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYW 276
           VQG+FFNA+F++Y+LSPKLAHRV GYLEEEAIHSYTE+LK++D G+I NVPAPAIAIDYW
Sbjct: 61  VQGIFFNAYFLMYILSPKLAHRVTGYLEEEAIHSYTEFLKELDKGNIPNVPAPAIAIDYW 120

Query: 277 RLPKDATLKDVITVIRADEAHHRD 300
           RLPKD+TL+DV+ V+RADEAHHR+
Sbjct: 121 RLPKDSTLRDVVVVVRADEAHHRE 144


>gi|257481050|gb|ACV60634.1| mitochondrial alternative oxidase 1a [Pinus pinea]
          Length = 147

 Score =  253 bits (647), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 116/147 (78%), Positives = 135/147 (91%)

Query: 156 VAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVL 215
           VAAVPGMVGGMLLH KSLR+F+HSGGWIK LL+EAENERMHLMT +E+ +P+WYER LV 
Sbjct: 1   VAAVPGMVGGMLLHCKSLRRFEHSGGWIKTLLDEAENERMHLMTFMEVSQPRWYERALVF 60

Query: 216 TVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDY 275
           TVQGVFF+A+F+ YL SPKLAHRVVGYLEEEAI+SYTE+LK++D G+IENVPAPA AIDY
Sbjct: 61  TVQGVFFSAYFLAYLASPKLAHRVVGYLEEEAIYSYTEFLKELDKGTIENVPAPANAIDY 120

Query: 276 WRLPKDATLKDVITVIRADEAHHRDVN 302
           WRLP D+TL+DV+ V+RADEAHHRDVN
Sbjct: 121 WRLPADSTLRDVVMVVRADEAHHRDVN 147


>gi|254452548|ref|ZP_05065985.1| alternative oxidase [Octadecabacter arcticus 238]
 gi|198266954|gb|EDY91224.1| alternative oxidase [Octadecabacter arcticus 238]
          Length = 217

 Score =  252 bits (644), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 121/205 (59%), Positives = 153/205 (74%), Gaps = 1/205 (0%)

Query: 105 YRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVG 164
           Y A+L+ +   HHVP  F D+ A R VK LR+  D FF  RY  RA++LETVAAVPGMVG
Sbjct: 7   YEAELASENMHHHVPQDFRDRFALRLVKFLRVFADKFFAGRYSHRAVVLETVAAVPGMVG 66

Query: 165 GMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNA 224
           G+L HLK+LR  +   GWI+ L+EEA+NERMHLMT +E+ +P  +ER LV   Q +F+N 
Sbjct: 67  GLLQHLKALRHIRDDQGWIRELIEEADNERMHLMTFIEIAQPSKFERFLVAATQLIFYNF 126

Query: 225 FFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATL 284
           +F LYLL+P++AHRVVGYLEEEA+ SYT+YL+ ID+G IEN+ AP IAIDYW+L  +A L
Sbjct: 127 YFFLYLLAPRVAHRVVGYLEEEAVVSYTQYLEQIDAGLIENIAAPQIAIDYWKLSANARL 186

Query: 285 KDVITVIRADEAHHRDVNH-FASDI 308
           +DV+ VIR DEA HRD NH FA  I
Sbjct: 187 RDVVLVIREDEAGHRDKNHEFADKI 211


>gi|254436730|ref|ZP_05050224.1| Alternative oxidase superfamily [Octadecabacter antarcticus 307]
 gi|198252176|gb|EDY76490.1| Alternative oxidase superfamily [Octadecabacter antarcticus 307]
          Length = 217

 Score =  251 bits (642), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 120/206 (58%), Positives = 153/206 (74%), Gaps = 1/206 (0%)

Query: 104 TYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMV 163
            Y A+L      HH P  F D+ A R VK +R+  D FF  RYG RA++LETVAAVPGMV
Sbjct: 6   AYAAELDDKNLHHHEPQDFRDRFALRLVKFMRVFADKFFAHRYGHRAVVLETVAAVPGMV 65

Query: 164 GGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFN 223
           GG+L HLK+LR+ +   GWI+ L+EEA+NERMHLMT +E+ +P  +ER L+   Q VF+N
Sbjct: 66  GGLLQHLKALRQIRDDQGWIRELIEEADNERMHLMTFIEIAQPSRFERFLIAATQLVFYN 125

Query: 224 AFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDAT 283
            +F LYLL+P++AHRVVGYLEEEA+ SYT+YL  ID+G++ENVPAP IA DYW+LP  A 
Sbjct: 126 LYFFLYLLAPRVAHRVVGYLEEEAVVSYTQYLAQIDAGAVENVPAPQIAKDYWKLPDGAR 185

Query: 284 LKDVITVIRADEAHHRDVNH-FASDI 308
           L++V+ VIR DEA HRD NH FA+ I
Sbjct: 186 LREVVLVIREDEAGHRDKNHDFANKI 211


>gi|254453559|ref|ZP_05066996.1| alternative oxidase [Octadecabacter arcticus 238]
 gi|198267965|gb|EDY92235.1| alternative oxidase [Octadecabacter arcticus 238]
          Length = 239

 Score =  251 bits (640), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 118/197 (59%), Positives = 153/197 (77%), Gaps = 1/197 (0%)

Query: 113 LKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKS 172
           L+ HHVP +  D+ A R VK +R   D FF  RYG RA++LETVAAVPGMVGG+L HL++
Sbjct: 37  LQVHHVPHSMNDRAALRVVKTMRFFADRFFANRYGHRAVVLETVAAVPGMVGGLLQHLRA 96

Query: 173 LRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLS 232
           +R  +   GWIK L+EEA+NERMHLMT +++ +P  +ER L++  Q VF+N +F LYLL+
Sbjct: 97  IRHIRDDQGWIKELIEEADNERMHLMTFIQIAQPSRFERTLIMVAQAVFYNLYFFLYLLA 156

Query: 233 PKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIR 292
           PK AHRVVGYLEEEA+ SY+ YL++ID+G +ENV AP IAI+YW+LP DA L+DV+ V+R
Sbjct: 157 PKTAHRVVGYLEEEAVISYSHYLEEIDAGRVENVAAPQIAINYWKLPSDARLRDVVVVVR 216

Query: 293 ADEAHHRDVN-HFASDI 308
           ADEAHHRD N HFA+ I
Sbjct: 217 ADEAHHRDTNHHFANQI 233


>gi|381396187|ref|ZP_09921879.1| alternative oxidase 1a, mitochondrial [Glaciecola punicea DSM 14233
           = ACAM 611]
 gi|379328367|dbj|GAB57012.1| alternative oxidase 1a, mitochondrial [Glaciecola punicea DSM 14233
           = ACAM 611]
          Length = 217

 Score =  249 bits (637), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 117/205 (57%), Positives = 155/205 (75%), Gaps = 1/205 (0%)

Query: 104 TYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMV 163
           +++ +++  L KHH+P    D+ A+R  KLLR   D FF +RYG RA++LETVAAVPGMV
Sbjct: 8   SFKKEVADPLSKHHMPAGTSDRFAFRLTKLLRFFADHFFAKRYGHRAVVLETVAAVPGMV 67

Query: 164 GGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFN 223
            GM+ H++SLR+ +     I  LLEEAENERMHLMT +++ +P  +ER L++  QG FF 
Sbjct: 68  AGMVRHMRSLRRMKDDREAIHTLLEEAENERMHLMTFIKIAQPSLFERWLIILAQGFFFA 127

Query: 224 AFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDAT 283
           +FF+LY++S + AHR+VGY EEEA++SYTEYL  +DSG +ENVPAP IAIDYW LPKDA 
Sbjct: 128 SFFILYVVSGRTAHRLVGYFEEEAVYSYTEYLAAVDSGLLENVPAPDIAIDYWNLPKDAR 187

Query: 284 LKDVITVIRADEAHHRDVNH-FASD 307
           L+DVI V+R DEA HRD NH FA++
Sbjct: 188 LRDVIIVVRQDEAGHRDANHQFANN 212


>gi|297539819|ref|YP_003675588.1| Alternative oxidase [Methylotenera versatilis 301]
 gi|297259166|gb|ADI31011.1| Alternative oxidase [Methylotenera versatilis 301]
          Length = 212

 Score =  249 bits (636), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 112/193 (58%), Positives = 144/193 (74%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRK 175
           HH P    D+VA R  K+LR   D FF  RYG RA++LETVA VPGMV G L HLK++R 
Sbjct: 14  HHTPENLSDRVALRITKILRFFADTFFANRYGHRAVVLETVAGVPGMVAGALQHLKAIRL 73

Query: 176 FQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKL 235
            Q   GWI+ LL+EAENERMHLMT + + +P  +ER L++  QG+F+N FF+LYL+S K 
Sbjct: 74  MQPDNGWIRKLLDEAENERMHLMTFIHIAQPNRFERGLIMLAQGIFYNLFFLLYLISSKT 133

Query: 236 AHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADE 295
           AHR+VGY EEEA++SYTEYL  +D+G+ ENVPAP IAIDYW+L   A L++VI  +R DE
Sbjct: 134 AHRLVGYFEEEAVYSYTEYLAGVDNGTYENVPAPQIAIDYWQLDASARLREVIIAVRNDE 193

Query: 296 AHHRDVNHFASDI 308
           A+HRDVNH+ +D+
Sbjct: 194 ANHRDVNHYFADV 206


>gi|254418793|ref|ZP_05032517.1| Alternative oxidase superfamily [Brevundimonas sp. BAL3]
 gi|196184970|gb|EDX79946.1| Alternative oxidase superfamily [Brevundimonas sp. BAL3]
          Length = 230

 Score =  249 bits (636), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 126/222 (56%), Positives = 156/222 (70%), Gaps = 4/222 (1%)

Query: 108 DLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGML 167
           DL  D+  HH P +  D++A+  VK LR   D FF +RYG RA++LETVAAVPGMVG  L
Sbjct: 5   DLLSDIDVHHAPRSVSDRIAWGFVKSLRFCADTFFAKRYGHRAVVLETVAAVPGMVGATL 64

Query: 168 LHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFV 227
            HLK+LR+     GWI+ L++EAENERMHLMT +E+ +P  +ER +V+ VQ +F+  FF 
Sbjct: 65  THLKALRRMSDDRGWIRTLMDEAENERMHLMTFIEVCQPTLFERFIVMAVQWLFYLFFFG 124

Query: 228 LYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDV 287
           LYL+SP+ AHRVVGY EEEA+ SYT YL +ID G  EN PAP IA DYW LP  ATL+DV
Sbjct: 125 LYLVSPRTAHRVVGYFEEEAVISYTHYLAEIDEGRSENAPAPKIARDYWGLPASATLRDV 184

Query: 288 ITVIRADEAHHRDVNHFASDIQFQG--KELRDAPA--PLGYH 325
           + V+RADEAHHRDVNH  +D    G  K +R  PA  PL  H
Sbjct: 185 VLVVRADEAHHRDVNHGFADELAGGPVKAVRPGPAHVPLQPH 226


>gi|289208825|ref|YP_003460891.1| oxidase [Thioalkalivibrio sp. K90mix]
 gi|288944456|gb|ADC72155.1| Alternative oxidase [Thioalkalivibrio sp. K90mix]
          Length = 209

 Score =  248 bits (633), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 109/197 (55%), Positives = 148/197 (75%)

Query: 112 DLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLK 171
           DL +HH P  F D+VA     ++R+  D FF RRYG RA++LETVA VPGMVG  L HL+
Sbjct: 8   DLSRHHEPRDFSDRVARAFTSMMRLFADTFFARRYGHRAVVLETVAGVPGMVGATLQHLR 67

Query: 172 SLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLL 231
           SLR+ +   GWI+ L+EEAENERMHL+T +E+  P W ER+L++  QG F+  +F++Y++
Sbjct: 68  SLRRMEDDHGWIRTLMEEAENERMHLLTFIEIASPNWLERLLIILAQGFFYTLYFLIYVI 127

Query: 232 SPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVI 291
           SP+ AHR+VGY EEEA+ SYT+YL+++++G+IEN+PAP  AI YW LP+DA L DVI  +
Sbjct: 128 SPRTAHRIVGYFEEEAVISYTDYLEEVETGAIENIPAPDRAIQYWDLPEDARLSDVIRAV 187

Query: 292 RADEAHHRDVNHFASDI 308
           R DEA HRDVNH  +D+
Sbjct: 188 REDEAGHRDVNHGFADL 204


>gi|257481060|gb|ACV60639.1| mitochondrial alternative oxidase 1b [Pinus pinea]
          Length = 144

 Score =  248 bits (632), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 116/144 (80%), Positives = 134/144 (93%)

Query: 157 AAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLT 216
           AAVPGMVG +LLH KSLRKFQHSGGWIKALLEEAENERMHLMT +E+ KPKWYER LV T
Sbjct: 1   AAVPGMVGAILLHCKSLRKFQHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVST 60

Query: 217 VQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYW 276
           VQG+FFNA+F++Y+LSPKLAHR+ GYLEEEAI+SYTE+LK++D G+I NVPAPAIAIDYW
Sbjct: 61  VQGIFFNAYFLMYILSPKLAHRITGYLEEEAIYSYTEFLKELDKGNIPNVPAPAIAIDYW 120

Query: 277 RLPKDATLKDVITVIRADEAHHRD 300
           RLPKDATL+DV+ V+RADEAHHR+
Sbjct: 121 RLPKDATLRDVVVVVRADEAHHRE 144


>gi|395492241|ref|ZP_10423820.1| alternative oxidase [Sphingomonas sp. PAMC 26617]
          Length = 228

 Score =  247 bits (630), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 127/216 (58%), Positives = 155/216 (71%), Gaps = 4/216 (1%)

Query: 111 IDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHL 170
           IDL  HH P    D+ A    +LLR   D FF +RYG RA++LETVAAVPGMVG  L HL
Sbjct: 7   IDLSIHHPPHGGSDRFALAATRLLRFIADTFFAKRYGHRAIVLETVAAVPGMVGATLTHL 66

Query: 171 KSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYL 230
           + LR+ +   GWI+ L+EEAENERMHLMT +E+ KP  +ER++VL VQ +F+  FF LYL
Sbjct: 67  RCLRQMKPDRGWIRILMEEAENERMHLMTFLEVCKPTLFERLVVLVVQWLFYLGFFALYL 126

Query: 231 LSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITV 290
           LSPK AHR+VGY EEEA+ SYT YL +ID+G   NVPAPAIA  YW L  +ATL+DVI V
Sbjct: 127 LSPKTAHRLVGYFEEEAVISYTHYLAEIDAGRSANVPAPAIARRYWGLSDNATLRDVILV 186

Query: 291 IRADEAHHRDVNH-FASDIQFQGKELRDAPAPLGYH 325
           +RADEAHHRDVNH FA+D+   G +   A AP  +H
Sbjct: 187 VRADEAHHRDVNHSFAADL---GGKSPSAIAPYPWH 219


>gi|114571108|ref|YP_757788.1| alternative oxidase [Maricaulis maris MCS10]
 gi|114341570|gb|ABI66850.1| alternative oxidase [Maricaulis maris MCS10]
          Length = 214

 Score =  247 bits (630), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 113/197 (57%), Positives = 148/197 (75%)

Query: 111 IDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHL 170
           I L +H  P    D +A+  VK LR   D FF +RYG RA++LETVAAVPGMVGG+L HL
Sbjct: 7   IILDQHRKPEGLGDHIAFGFVKFLRFIADTFFAKRYGHRAVVLETVAAVPGMVGGLLQHL 66

Query: 171 KSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYL 230
           K++R+ +   GWI+ LL+EAENERMHLMT +E+ KP  +ER++++ VQ +F+N +F LYL
Sbjct: 67  KAIRRIRDDEGWIRTLLDEAENERMHLMTFIEIAKPTLFERIVIMVVQAIFYNCYFFLYL 126

Query: 231 LSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITV 290
            +P+ AHRVVGY EEEA+ SYT+YL+ ID+G  ENV AP IAIDYW LP +A L++V+  
Sbjct: 127 FAPRTAHRVVGYFEEEAVISYTQYLEGIDAGRHENVAAPQIAIDYWNLPANARLREVVIA 186

Query: 291 IRADEAHHRDVNHFASD 307
           +RADEA HRDVNH  +D
Sbjct: 187 VRADEAGHRDVNHDFAD 203


>gi|395006406|ref|ZP_10390227.1| Alternative oxidase [Acidovorax sp. CF316]
 gi|394315617|gb|EJE52407.1| Alternative oxidase [Acidovorax sp. CF316]
          Length = 221

 Score =  246 bits (629), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 117/209 (55%), Positives = 147/209 (70%)

Query: 100 MPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAV 159
           M  +T+  D +  L  HH      D+VA      LR   D FF +RYG RA++LETVAAV
Sbjct: 1   MTTDTHTPDFARSLDAHHPAHGLSDRVALAITLALRFFADTFFAKRYGNRAIVLETVAAV 60

Query: 160 PGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQG 219
           PGMVGGML+HL+ LR      GWI+ LL+EAENERMHLMT +E+ +P W+ER ++L  Q 
Sbjct: 61  PGMVGGMLVHLRCLRWMVDDEGWIRTLLDEAENERMHLMTFIEIARPSWFERAVILLTQA 120

Query: 220 VFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLP 279
           VFF  FF LYL+S + AHR+VGY EE+A+ SYT YL +ID G +ENVPAP IAI YW+LP
Sbjct: 121 VFFVCFFALYLVSSRTAHRLVGYFEEQAVVSYTLYLAEIDEGRVENVPAPDIAIAYWKLP 180

Query: 280 KDATLKDVITVIRADEAHHRDVNHFASDI 308
            DA L+DV+  +RADEA HRDVNH  +D+
Sbjct: 181 ADARLRDVVLAVRADEAGHRDVNHGFADV 209


>gi|208436656|gb|ACI28874.1| mitochondrial alternative oxidase 2, partial [Vitis vinifera]
          Length = 124

 Score =  246 bits (628), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 118/123 (95%), Positives = 121/123 (98%)

Query: 176 FQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKL 235
           F+ SGGWIKALLEEAENERMHLMTMVELV+PKWYER+LVLTVQGVFFNAFFVLYLLSPKL
Sbjct: 1   FEQSGGWIKALLEEAENERMHLMTMVELVQPKWYERVLVLTVQGVFFNAFFVLYLLSPKL 60

Query: 236 AHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADE 295
           AHRVVGYLEEEAIHSYTEYLKDIDSG IENVPAPAIAIDYWRLPKDATLKDVITVIRADE
Sbjct: 61  AHRVVGYLEEEAIHSYTEYLKDIDSGKIENVPAPAIAIDYWRLPKDATLKDVITVIRADE 120

Query: 296 AHH 298
           AHH
Sbjct: 121 AHH 123


>gi|404252627|ref|ZP_10956595.1| alternative oxidase [Sphingomonas sp. PAMC 26621]
          Length = 228

 Score =  246 bits (627), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 126/216 (58%), Positives = 156/216 (72%), Gaps = 4/216 (1%)

Query: 111 IDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHL 170
           IDL  HH P    D+ A    +LLR   D FF +RYG RA++LETVAAVPGMVG  L HL
Sbjct: 7   IDLSIHHPPHGGSDRFALAATRLLRFIADTFFAKRYGHRAIVLETVAAVPGMVGATLTHL 66

Query: 171 KSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYL 230
           + LR+ +   GWI+ L+EEAENERMHLMT +E+ KP  +ER++VL VQ +F+  FF LYL
Sbjct: 67  RCLRQMKPDRGWIRILMEEAENERMHLMTFLEVCKPTLFERLVVLVVQWLFYLGFFALYL 126

Query: 231 LSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITV 290
           LSPK AHR+VGY EEEA+ SY+ YL +ID+G   NVPAPAIA  YW L  +ATL+DVI V
Sbjct: 127 LSPKTAHRLVGYFEEEAVISYSHYLAEIDAGRSANVPAPAIARRYWGLSDNATLRDVILV 186

Query: 291 IRADEAHHRDVNH-FASDIQFQGKELRDAPAPLGYH 325
           +RADEAHHRDVNH FA+D+   G +  +A AP  +H
Sbjct: 187 VRADEAHHRDVNHGFAADL---GGKPPNAIAPYPWH 219


>gi|295690408|ref|YP_003594101.1| alternative oxidase [Caulobacter segnis ATCC 21756]
 gi|295432311|gb|ADG11483.1| Alternative oxidase [Caulobacter segnis ATCC 21756]
          Length = 229

 Score =  246 bits (627), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 120/199 (60%), Positives = 146/199 (73%), Gaps = 1/199 (0%)

Query: 111 IDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHL 170
           IDL  HH P    D +A+  VK LR   D FF +RYG RA++LETVAAVPGMVG  L HL
Sbjct: 6   IDLDVHHQPKGVSDVIAFGFVKALRFCADTFFAKRYGHRAVVLETVAAVPGMVGATLNHL 65

Query: 171 KSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYL 230
           K LR+ +   GWIK L++EAENERMHLMT +E+ KP  +ER +V+  Q VF+  FF LYL
Sbjct: 66  KCLRRMEGDKGWIKTLMDEAENERMHLMTFIEVAKPTLFERFVVVAAQWVFYLFFFALYL 125

Query: 231 LSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITV 290
           +S K AHRVVGY EEEA+ SYT YL +ID G   NV AP IA+DYW+LP  ATL+DV+ V
Sbjct: 126 ISSKTAHRVVGYFEEEAVISYTHYLAEIDEGRSANVAAPQIALDYWKLPTGATLRDVVEV 185

Query: 291 IRADEAHHRDVNH-FASDI 308
           +RADEAHHRDVNH FA+++
Sbjct: 186 VRADEAHHRDVNHGFANEL 204


>gi|94498336|ref|ZP_01304895.1| Alternative oxidase [Sphingomonas sp. SKA58]
 gi|94422216|gb|EAT07258.1| Alternative oxidase [Sphingomonas sp. SKA58]
          Length = 236

 Score =  246 bits (627), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 121/213 (56%), Positives = 151/213 (70%), Gaps = 6/213 (2%)

Query: 111 IDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHL 170
           +DL  HH P    D++A    K+LR+  D FF +RYG RA++LETVAAVPGMVG  L HL
Sbjct: 15  VDLTVHHTPRDLRDRIALGFTKVLRLCADTFFAKRYGHRAIVLETVAAVPGMVGATLTHL 74

Query: 171 KSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYL 230
           + LR+ Q   GWI+ L+EEAENERMHLMT +E+ +P  +ER+++L VQ  F+ AFF LYL
Sbjct: 75  RCLRRMQGDNGWIRTLMEEAENERMHLMTFIEVAQPSLFERLVILLVQWAFYLAFFGLYL 134

Query: 231 LSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITV 290
           +S + AHRVVGY EEEA+ SYT YLK+ID G   +V AP IA  YW+LP  ATL+DV+ V
Sbjct: 135 VSARTAHRVVGYFEEEAVISYTLYLKEIDEGRSPDVAAPMIARRYWKLPDTATLRDVVLV 194

Query: 291 IRADEAHHRDVNHFASDIQFQGKELRDAPAPLG 323
           +RADEAHHRDVNH  +D      EL   PAPL 
Sbjct: 195 VRADEAHHRDVNHGFAD------ELAGKPAPLS 221


>gi|110680239|ref|YP_683246.1| alternative oxidase [Roseobacter denitrificans OCh 114]
 gi|109456355|gb|ABG32560.1| alternative oxidase [Roseobacter denitrificans OCh 114]
          Length = 213

 Score =  246 bits (627), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 114/189 (60%), Positives = 147/189 (77%), Gaps = 1/189 (0%)

Query: 116 HHVPTTFL-DKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLR 174
           HH P T L D+ A R VK +RI  D FF +RYG RA++LETVAAVPGMVGGML HLK+LR
Sbjct: 15  HHTPPTDLRDRFALRLVKFMRIFADKFFAKRYGHRAVVLETVAAVPGMVGGMLQHLKALR 74

Query: 175 KFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPK 234
           + +   GW++ LL+EAENERMHLMT +++ +P   ER L++  QGVFFN +F+LYL +P+
Sbjct: 75  RLRDDEGWVRELLDEAENERMHLMTFIKVAEPSRLERYLIIAGQGVFFNLYFLLYLFAPR 134

Query: 235 LAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRAD 294
            AHRVV YLEEEA+ SYT+YL+++D+G + N+ AP IAIDYW+LP DA L++VI  +RAD
Sbjct: 135 TAHRVVAYLEEEAVISYTQYLEEVDAGRVPNIEAPQIAIDYWKLPADARLREVIVAVRAD 194

Query: 295 EAHHRDVNH 303
           EA HRD NH
Sbjct: 195 EAGHRDRNH 203


>gi|208436650|gb|ACI28871.1| mitochondrial alternative oxidase 1a, partial [Vitis vinifera]
 gi|208436658|gb|ACI28875.1| mitochondrial alternative oxidase 1a, partial [Vitis vinifera]
          Length = 147

 Score =  245 bits (626), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 111/147 (75%), Positives = 132/147 (89%)

Query: 156 VAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVL 215
           VAAVPGMVGGMLLH KSLR+F+HSGGWI+ LLEEAENERMHLMT +E+ KP+WYER LV 
Sbjct: 1   VAAVPGMVGGMLLHCKSLRRFEHSGGWIRVLLEEAENERMHLMTFMEVAKPRWYERALVF 60

Query: 216 TVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDY 275
            VQG+F+N +FV Y++SPK+AHR VGYLEEEAIHSY E++K++DSG+I NVPAPAIAIDY
Sbjct: 61  AVQGIFWNFYFVAYVISPKVAHRAVGYLEEEAIHSYNEFIKELDSGNIPNVPAPAIAIDY 120

Query: 276 WRLPKDATLKDVITVIRADEAHHRDVN 302
           WRL  D+TL+DV+ V+RADEAHHRDVN
Sbjct: 121 WRLAPDSTLRDVVMVVRADEAHHRDVN 147


>gi|339502929|ref|YP_004690349.1| alternative oxidase-like protein [Roseobacter litoralis Och 149]
 gi|338756922|gb|AEI93386.1| alternative oxidase-like protein [Roseobacter litoralis Och 149]
          Length = 213

 Score =  244 bits (624), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 112/189 (59%), Positives = 146/189 (77%), Gaps = 1/189 (0%)

Query: 116 HHVP-TTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLR 174
           HH P     D+ A R VK +R+  D FF +RYG RA++LETVAAVPGMVGGML HLK+LR
Sbjct: 15  HHTPPKDVRDRFALRLVKFMRVFADKFFAKRYGHRAVVLETVAAVPGMVGGMLQHLKALR 74

Query: 175 KFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPK 234
           + +   GW++ LL+EAENERMHLMT +++ +P   ER L++  QGVFFN +FVLYL +P+
Sbjct: 75  RLRDDEGWVRELLDEAENERMHLMTFIKVAEPSRLERYLIIAGQGVFFNLYFVLYLFAPR 134

Query: 235 LAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRAD 294
            AHRVV YLEEEA+ SYT+YL+++D+G ++N+ AP IAIDYW+LP DA L++VI  +RAD
Sbjct: 135 TAHRVVAYLEEEAVISYTQYLEEVDAGRVQNIAAPQIAIDYWKLPPDARLREVIIAVRAD 194

Query: 295 EAHHRDVNH 303
           EA HRD NH
Sbjct: 195 EAGHRDRNH 203


>gi|148550731|ref|YP_001260170.1| alternative oxidase [Sphingomonas wittichii RW1]
 gi|402825917|ref|ZP_10875159.1| alternative oxidase [Sphingomonas sp. LH128]
 gi|148503150|gb|ABQ71403.1| Alternative oxidase [Sphingomonas wittichii RW1]
 gi|402260473|gb|EJU10594.1| alternative oxidase [Sphingomonas sp. LH128]
          Length = 229

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 120/199 (60%), Positives = 146/199 (73%), Gaps = 1/199 (0%)

Query: 111 IDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHL 170
           IDL  HH  +   DKVA    K+LR   D FF +RYG RA++LETVAAVPGMVG  + HL
Sbjct: 6   IDLGVHHKASGLSDKVALGFTKVLRWCADTFFAQRYGHRAVVLETVAAVPGMVGATINHL 65

Query: 171 KSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYL 230
             LR+     GWIK L++EAENERMHLMT +E+ KP W+ER +++ VQ VF+  FF LYL
Sbjct: 66  ACLRRMCDDKGWIKTLMDEAENERMHLMTFIEISKPTWFERAVIIGVQWVFYVFFFALYL 125

Query: 231 LSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITV 290
           LS K AHRVVGY EEEA+ SYT YL +ID G   NVPAP IA  YW LP++ATL+DV+ V
Sbjct: 126 LSAKTAHRVVGYFEEEAVISYTHYLAEIDEGRSANVPAPEIAKRYWGLPEEATLRDVVLV 185

Query: 291 IRADEAHHRDVNH-FASDI 308
           +RADEAHHRDVNH FA+++
Sbjct: 186 VRADEAHHRDVNHGFANEL 204


>gi|208436654|gb|ACI28873.1| mitochondrial alternative oxidase 1b, partial [Vitis vinifera]
          Length = 142

 Score =  242 bits (618), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 109/142 (76%), Positives = 127/142 (89%)

Query: 158 AVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTV 217
           AVPGMVGGMLLH +S R+F+ SGGWIKALLEEAENERMHLMT +EL KP+WYER +V  V
Sbjct: 1   AVPGMVGGMLLHCQSPRRFEQSGGWIKALLEEAENERMHLMTFIELAKPQWYERAIVFAV 60

Query: 218 QGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWR 277
           QGVFFNA+F+ YL SPK+AHR+ GYLEEEA+ SYTE+LKD+D+GS ENVPAPAIAIDYWR
Sbjct: 61  QGVFFNAYFLTYLASPKVAHRITGYLEEEAVRSYTEFLKDLDNGSFENVPAPAIAIDYWR 120

Query: 278 LPKDATLKDVITVIRADEAHHR 299
           LP ++TL+DV+ VIRADEAHHR
Sbjct: 121 LPAESTLRDVVEVIRADEAHHR 142


>gi|254420740|ref|ZP_05034464.1| Alternative oxidase superfamily [Brevundimonas sp. BAL3]
 gi|196186917|gb|EDX81893.1| Alternative oxidase superfamily [Brevundimonas sp. BAL3]
          Length = 239

 Score =  242 bits (618), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 115/195 (58%), Positives = 143/195 (73%), Gaps = 1/195 (0%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRK 175
           HH P  F D+ A    KLLR   D FF +RYG RA++LETVAAVPGMVG  + HL  LR+
Sbjct: 24  HHEPHGFSDRFALGFTKLLRFSADTFFAKRYGHRAIVLETVAAVPGMVGATIQHLTCLRR 83

Query: 176 FQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKL 235
            +   GWI+ L+EEAENERMHLMT +E+ KP ++ER+++   Q VF+  FF+LYL+S + 
Sbjct: 84  MKDDDGWIRTLMEEAENERMHLMTFIEVAKPTYFERLVIQIAQAVFYVGFFLLYLVSART 143

Query: 236 AHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADE 295
           AHRVVGY EEEA+ SYT YLK+ID G   NVPAP IA  YW++  DATL+DV+ V+RADE
Sbjct: 144 AHRVVGYFEEEAVISYTLYLKEIDEGRSPNVPAPEIAKHYWKMAPDATLRDVVLVVRADE 203

Query: 296 AHHRDVNH-FASDIQ 309
           AHHRDVNH FAS + 
Sbjct: 204 AHHRDVNHGFASSLN 218


>gi|378548284|sp|F4P6T0.1|AOX_BATDJ RecName: Full=Ubiquinol oxidase, mitochondrial; AltName:
           Full=Alternative oxidase; Flags: Precursor
 gi|328768827|gb|EGF78872.1| hypothetical protein BATDEDRAFT_32033 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 316

 Score =  241 bits (614), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 116/202 (57%), Positives = 151/202 (74%), Gaps = 1/202 (0%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRK 175
           H +P +  D  AY  V+ LR   DLFF+++Y  RA++LETVAAVPGMV GML HL SLR 
Sbjct: 93  HRIPVSISDWTAYGIVRFLRFFADLFFRKQYVHRAVVLETVAAVPGMVAGMLRHLTSLRL 152

Query: 176 FQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKL 235
            +H GGWI  LL EAENER+HL+T +++ +P  +ERMLV  VQ +FFN +F+ Y+L PK 
Sbjct: 153 MRHDGGWISHLLSEAENERLHLLTWMKVCQPSLFERMLVALVQTLFFNVYFLAYMLFPKT 212

Query: 236 AHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADE 295
           AHR+VGYLEEEAI SYT +L +ID+G+I N PAP +AIDYW L +DAT++DV+  +RADE
Sbjct: 213 AHRMVGYLEEEAIISYTHFLAEIDAGNIPNGPAPKLAIDYWNLKEDATVRDVVLAVRADE 272

Query: 296 AHHRDVN-HFASDIQFQGKELR 316
           A+HRD+N HFA  I    ++LR
Sbjct: 273 ANHRDMNHHFADRIVIHQEDLR 294


>gi|37955176|gb|AAP76379.1| alternative oxidase [Capsicum annuum]
          Length = 135

 Score =  240 bits (613), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 110/135 (81%), Positives = 126/135 (93%)

Query: 162 MVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVF 221
           MVGGMLLH KSLR+F+ SGGWIKALLEEAENERMHLMT +E+ KPKWYER LV  VQGVF
Sbjct: 1   MVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVF 60

Query: 222 FNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKD 281
           FNA+FV Y+LSPKLAHR+VGYLEEEAIHSYTE+LK++D+G+IENVPAPAIAIDYWRLPKD
Sbjct: 61  FNAYFVTYILSPKLAHRIVGYLEEEAIHSYTEFLKELDNGNIENVPAPAIAIDYWRLPKD 120

Query: 282 ATLKDVITVIRADEA 296
           +TL+DV+ V+RADEA
Sbjct: 121 STLRDVVLVVRADEA 135


>gi|254455703|ref|ZP_05069132.1| alternative oxidase 2 [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082705|gb|EDZ60131.1| alternative oxidase 2 [Candidatus Pelagibacter sp. HTCC7211]
          Length = 222

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 111/192 (57%), Positives = 144/192 (75%)

Query: 112 DLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLK 171
           DL+KH+ P    D++A    K LR   D FF+++YG RA++LETVAAVPGMV GML HL+
Sbjct: 3   DLEKHYKPQNKSDRIALAFTKFLRYIADTFFKKKYGHRAVVLETVAAVPGMVAGMLTHLR 62

Query: 172 SLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLL 231
           SLRK +   GWIK LLEEAENERMHLMT +++ KP   ER +++  Q +F   + ++YL+
Sbjct: 63  SLRKMEDDRGWIKILLEEAENERMHLMTFIQVAKPTSLERFIIIIAQFLFIIMYSIIYLV 122

Query: 232 SPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVI 291
           S + AHR+VGY EEEA+ SYTEYLK+++SG I++ PAP IAIDYW LP  +TLKDV+ V+
Sbjct: 123 SQRTAHRIVGYFEEEAVFSYTEYLKELESGRIDDQPAPKIAIDYWNLPLHSTLKDVVRVV 182

Query: 292 RADEAHHRDVNH 303
           R DEA HRDVNH
Sbjct: 183 RDDEAGHRDVNH 194


>gi|433335539|gb|AGB34163.1| mitochondrial alternative oxidase 1b, partial [Olea europaea subsp.
           europaea]
          Length = 143

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 110/143 (76%), Positives = 128/143 (89%)

Query: 157 AAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLT 216
           AAVPGMVGGMLLH KSLR+F+HSGGWIK LL+EAENERMHLMT +E+ + +W ER LV T
Sbjct: 1   AAVPGMVGGMLLHCKSLRRFEHSGGWIKTLLDEAENERMHLMTFMEVTQSRWNERALVFT 60

Query: 217 VQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYW 276
           VQGV FNA+F+ YL SPKLAHRVVGYLEEEAI+SYTE+LK++D G+IENVPAPAIAIDYW
Sbjct: 61  VQGVCFNAYFLAYLASPKLAHRVVGYLEEEAIYSYTEFLKELDKGTIENVPAPAIAIDYW 120

Query: 277 RLPKDATLKDVITVIRADEAHHR 299
            LP D+TL+DV+ V+RADEAHHR
Sbjct: 121 CLPADSTLRDVVMVVRADEAHHR 143


>gi|208436646|gb|ACI28869.1| mitochondrial alternative oxidase 1a, partial [Vitis vinifera]
          Length = 143

 Score =  239 bits (609), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 107/143 (74%), Positives = 128/143 (89%)

Query: 160 PGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQG 219
           PGMVGGMLLH KSLR+F+HSGGWI+ LLEEAENERMHLMT +E+ KP+WYER LV  VQG
Sbjct: 1   PGMVGGMLLHCKSLRRFEHSGGWIRVLLEEAENERMHLMTFMEVAKPRWYERALVFAVQG 60

Query: 220 VFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLP 279
           +F+N +FV Y++SPK+AHR VGYLEEEAIHSY E++K++DSG+I NVPAPAIAIDYWRL 
Sbjct: 61  IFWNFYFVAYVISPKVAHRAVGYLEEEAIHSYNEFIKELDSGNIPNVPAPAIAIDYWRLA 120

Query: 280 KDATLKDVITVIRADEAHHRDVN 302
            D+TL+DV+ V+RADEAHHRDVN
Sbjct: 121 PDSTLRDVVMVVRADEAHHRDVN 143


>gi|452753499|ref|ZP_21953223.1| Alternative oxidase [alpha proteobacterium JLT2015]
 gi|451959189|gb|EMD81621.1| Alternative oxidase [alpha proteobacterium JLT2015]
          Length = 229

 Score =  238 bits (608), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 117/193 (60%), Positives = 139/193 (72%)

Query: 111 IDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHL 170
           IDL  HH P  F D+VA+   K LR   D FF  RYG RA++LETVAAVPGMVG  + HL
Sbjct: 6   IDLGVHHKPRGFSDRVAFGFTKALRWCADTFFAERYGHRAVVLETVAAVPGMVGATINHL 65

Query: 171 KSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYL 230
             LR+     GWIK L++EAENERMHLMT +E+ KP  +ER +++ VQ VF+  FF LYL
Sbjct: 66  ACLRRMCDDKGWIKTLMDEAENERMHLMTFIEISKPTLFERAVIIGVQWVFYLFFFALYL 125

Query: 231 LSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITV 290
           +S K AHRVVGY EEEA+ SYT YL +ID G  +NVPAP IA  YW LP  ATL+DV+ V
Sbjct: 126 VSSKTAHRVVGYFEEEAVISYTHYLTEIDEGRSDNVPAPEIAKKYWDLPDSATLRDVVLV 185

Query: 291 IRADEAHHRDVNH 303
           +RADEAHHRDVNH
Sbjct: 186 VRADEAHHRDVNH 198


>gi|87199593|ref|YP_496850.1| alternative oxidase [Novosphingobium aromaticivorans DSM 12444]
 gi|87135274|gb|ABD26016.1| alternative oxidase [Novosphingobium aromaticivorans DSM 12444]
          Length = 229

 Score =  238 bits (607), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 118/199 (59%), Positives = 144/199 (72%), Gaps = 1/199 (0%)

Query: 111 IDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHL 170
           IDL  HH P    D++A+   K LR   D FF  RYG RA++LETVAAVPGMVG  + HL
Sbjct: 6   IDLSVHHKPGGLSDRIAFGFTKALRWCADTFFAERYGHRAVVLETVAAVPGMVGATINHL 65

Query: 171 KSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYL 230
             LR+     GWIK L++EAENERMHLMT +E+ KP  +ER +++ VQ VF+  FF LYL
Sbjct: 66  ACLRRMCDDKGWIKTLMDEAENERMHLMTFIEISKPTLFERAVIMGVQWVFYLFFFGLYL 125

Query: 231 LSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITV 290
           +SPK AHRVVGY EEEA+ SYT YL +ID G   NVPAPAIA  YW LP +A L+DV+ V
Sbjct: 126 VSPKTAHRVVGYFEEEAVISYTHYLAEIDQGRSANVPAPAIAKRYWGLPDNAMLRDVVLV 185

Query: 291 IRADEAHHRDVNH-FASDI 308
           +RADEAHHRDVNH FA+++
Sbjct: 186 VRADEAHHRDVNHGFANEL 204


>gi|384500340|gb|EIE90831.1| hypothetical protein RO3G_15542 [Rhizopus delemar RA 99-880]
          Length = 260

 Score =  238 bits (607), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 113/193 (58%), Positives = 145/193 (75%)

Query: 115 KHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLR 174
           KH VP +  DK AY TVK LR+  D +F + +  RA+MLET+AAVPGMVG ML H+KSLR
Sbjct: 41  KHRVPASLGDKGAYYTVKCLRLLPDTYFGKDHYMRAVMLETIAAVPGMVGAMLRHMKSLR 100

Query: 175 KFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPK 234
           +     GWI  LL EAENERMHLMT ++ +KP  ++R++VL  QG+FFNA+F+LYL+SPK
Sbjct: 101 RMSEDNGWISHLLHEAENERMHLMTWMKCLKPTVWDRLMVLGAQGIFFNAYFLLYLVSPK 160

Query: 235 LAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRAD 294
            AHR+ GYLEEEA+ SYT +L DID G I+N PAP +AI+Y+ L   AT++DV+  +RAD
Sbjct: 161 TAHRMCGYLEEEAVISYTHFLNDIDQGIIKNGPAPQVAIEYYNLHPQATIRDVVLAVRAD 220

Query: 295 EAHHRDVNHFASD 307
           EA HRD NH+ SD
Sbjct: 221 EAVHRDANHYLSD 233


>gi|170674873|gb|ACB30187.1| mitochondrial alternative oxidase 1c, partial [Hypericum
           perforatum]
          Length = 154

 Score =  238 bits (607), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 111/153 (72%), Positives = 127/153 (83%), Gaps = 1/153 (0%)

Query: 70  ENG-IVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAY 128
           +NG  V SSYWG+   + T+EDGSPW WNCF PWETY+AD SID+ KHH  TTF+ K AY
Sbjct: 1   QNGKAVVSSYWGVPPSRATKEDGSPWRWNCFRPWETYKADTSIDVTKHHKATTFMGKFAY 60

Query: 129 RTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLE 188
            TV+ L+ PT LFFQRR+ C AM+LETVAAVPGMVGGMLLHLKS+R+F+HSGGWIKALLE
Sbjct: 61  WTVQSLKFPTYLFFQRRHMCHAMLLETVAAVPGMVGGMLLHLKSIRRFEHSGGWIKALLE 120

Query: 189 EAENERMHLMTMVELVKPKWYERMLVLTVQGVF 221
           EAENERMHLMT +EL +PKWYER LV  VQGVF
Sbjct: 121 EAENERMHLMTFLELSQPKWYERALVFAVQGVF 153


>gi|359786470|ref|ZP_09289605.1| Alternative oxidase [Halomonas sp. GFAJ-1]
 gi|359296320|gb|EHK60573.1| Alternative oxidase [Halomonas sp. GFAJ-1]
          Length = 212

 Score =  238 bits (606), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 116/194 (59%), Positives = 149/194 (76%)

Query: 114 KKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSL 173
           + H+ P  F D++AYR V+ +R   D+FF  RYG RA++LETVAAVPGMVGG + HL +L
Sbjct: 15  QTHYQPRGFSDRIAYRLVRFMRFFADVFFAGRYGHRAVILETVAAVPGMVGGAIQHLHAL 74

Query: 174 RKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSP 233
           R+ +   GWI+ LL+EAENERMHLMT +E+ KP  +ER +++  QG+FFN FF+LYL S 
Sbjct: 75  RRIKDDDGWIRTLLDEAENERMHLMTFIEVAKPNRFERFIIMLAQGIFFNLFFLLYLCSS 134

Query: 234 KLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRA 293
           K AHRVVGYLEEEA++SYTEYL+ ID G  EN+PAP IAIDYW LP+DA L++V+  +RA
Sbjct: 135 KTAHRVVGYLEEEAVYSYTEYLEGIDRGEYENIPAPQIAIDYWNLPQDARLREVVVAVRA 194

Query: 294 DEAHHRDVNHFASD 307
           DEA HRD NH  +D
Sbjct: 195 DEADHRDTNHDFAD 208


>gi|190710537|gb|ACE95099.1| mitochondrial alternative oxidase precursor [Citrus sinensis]
          Length = 148

 Score =  238 bits (606), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 109/143 (76%), Positives = 126/143 (88%)

Query: 156 VAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVL 215
           VAAVPGMVGGMLLH KSLR+F+HSGGWIKALLEEAENERMHLMT +E+ KPKWYER LV 
Sbjct: 1   VAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVF 60

Query: 216 TVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDY 275
             QGVFFNA+F+ YL+SPK AHR+VGYLEE  IHSYTE+LK++D G+IENVPAPAIA DY
Sbjct: 61  AXQGVFFNAYFLGYLISPKFAHRMVGYLEEXXIHSYTEFLKELDKGNIENVPAPAIATDY 120

Query: 276 WRLPKDATLKDVITVIRADEAHH 298
           WRLP ++TLKDV+ V+  +EAHH
Sbjct: 121 WRLPPNSTLKDVVLVVXTNEAHH 143


>gi|74317948|ref|YP_315688.1| oxidase [Thiobacillus denitrificans ATCC 25259]
 gi|74057443|gb|AAZ97883.1| putative oxidase [Thiobacillus denitrificans ATCC 25259]
          Length = 232

 Score =  237 bits (605), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 109/195 (55%), Positives = 139/195 (71%)

Query: 113 LKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKS 172
           L  H  P    D++A   VKL++   D FF RRYG RA++LET+AAVPGMVG  L HL++
Sbjct: 27  LDVHRPPADLRDRIALGFVKLVKAAADAFFGRRYGHRAVVLETIAAVPGMVGATLQHLRA 86

Query: 173 LRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLS 232
           LR+ Q   GWI+ LLEEAENERMHLMT + + +P  +ER+LV+  Q  F+N +F +YL S
Sbjct: 87  LRRMQGDRGWIRTLLEEAENERMHLMTFIHVAQPTQFERLLVVLAQAFFYNLYFFVYLAS 146

Query: 233 PKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIR 292
           PK AHR+ GYLEEEA+HSYTEYL  +D G+  NV AP IAI+YW LP DA L++VI  +R
Sbjct: 147 PKTAHRITGYLEEEAVHSYTEYLARVDGGACTNVAAPGIAIEYWALPADARLREVIVAVR 206

Query: 293 ADEAHHRDVNHFASD 307
            DE  HR+VNH  +D
Sbjct: 207 DDEIRHREVNHAYAD 221


>gi|14599476|gb|AAK70936.1| alternative oxidase 1b [Mangifera indica]
          Length = 144

 Score =  237 bits (604), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 110/144 (76%), Positives = 127/144 (88%)

Query: 153 LETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERM 212
           LETVAAVPG VGGMLLH KSLRKF+HSGGWIK L EEAENERMHLMT +E+ KP+WYER 
Sbjct: 1   LETVAAVPGTVGGMLLHCKSLRKFEHSGGWIKVLTEEAENERMHLMTFMEVAKPRWYERA 60

Query: 213 LVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIA 272
           L+L VQGVFFN + + YL+SPK AHRVVGYLEEEAI SYTE+LK++D G+IENVPAPAIA
Sbjct: 61  LILAVQGVFFNVYMLGYLISPKFAHRVVGYLEEEAILSYTEFLKELDKGNIENVPAPAIA 120

Query: 273 IDYWRLPKDATLKDVITVIRADEA 296
           IDYWRLP ++TL+DV+ V+RADE 
Sbjct: 121 IDYWRLPPESTLRDVVIVVRADEC 144


>gi|329902679|ref|ZP_08273233.1| putative oxidase [Oxalobacteraceae bacterium IMCC9480]
 gi|327548651|gb|EGF33301.1| putative oxidase [Oxalobacteraceae bacterium IMCC9480]
          Length = 204

 Score =  236 bits (603), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 110/192 (57%), Positives = 138/192 (71%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRK 175
           HH P    D+ A    K LR   D+FF +RYG RA++LETVAAVPGMVGG+L HLKSLR 
Sbjct: 10  HHDPRDLSDRFALGFTKFLRFLADVFFAKRYGHRAVVLETVAAVPGMVGGLLQHLKSLRL 69

Query: 176 FQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKL 235
            +   GW+  LL+EAENERMHLMT +++ +P  +ER+++   Q VF+N +F +YL S K 
Sbjct: 70  IKDDNGWVHTLLDEAENERMHLMTFIQIAQPSGFERLVIFVTQLVFYNLYFFIYLFSAKT 129

Query: 236 AHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADE 295
           AHR+VGY EEEA +SYTEYL  ID+G  EN+ APAIAI YW L  DA L+DV+  +RADE
Sbjct: 130 AHRIVGYFEEEAYYSYTEYLAGIDNGEHENIAAPAIAIKYWNLHPDARLRDVVIAVRADE 189

Query: 296 AHHRDVNHFASD 307
           A HRDVNH  +D
Sbjct: 190 AGHRDVNHAYAD 201


>gi|208436652|gb|ACI28872.1| mitochondrial alternative oxidase 1b, partial [Vitis vinifera]
          Length = 138

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 105/138 (76%), Positives = 123/138 (89%)

Query: 162 MVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVF 221
           MVGGM L+ +SLR+F+ SGGWIKALLEEAENERMHLMT +EL KP+WYER LV  VQGVF
Sbjct: 1   MVGGMFLYCQSLRRFEQSGGWIKALLEEAENERMHLMTFIELAKPQWYERALVFAVQGVF 60

Query: 222 FNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKD 281
           FNA+F+ YL SPK+AHR+ GYLEEEA+ SYTE+LKD+D+GS ENVPAPAIAIDYWRLP +
Sbjct: 61  FNAYFLTYLASPKVAHRITGYLEEEAVRSYTEFLKDLDNGSFENVPAPAIAIDYWRLPAE 120

Query: 282 ATLKDVITVIRADEAHHR 299
           +TL+DV+ VIRADEAHHR
Sbjct: 121 STLRDVVEVIRADEAHHR 138


>gi|208436642|gb|ACI28867.1| mitochondrial alternative oxidase 1a, partial [Vitis vinifera]
          Length = 143

 Score =  235 bits (599), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 106/142 (74%), Positives = 127/142 (89%)

Query: 157 AAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLT 216
           AAVPGMVGGMLLH KSLR+F+HSGGWI+ LLEEAENERMHLMT +E+ KP+WYER LV  
Sbjct: 1   AAVPGMVGGMLLHCKSLRRFEHSGGWIRVLLEEAENERMHLMTFMEVAKPRWYERALVFA 60

Query: 217 VQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYW 276
           VQG+F+N +FV Y++SPK+AHR VGYLEEEAIHSY E++K++DSG+I NVPAPAIAIDYW
Sbjct: 61  VQGIFWNFYFVAYVISPKVAHRAVGYLEEEAIHSYNEFIKELDSGNIPNVPAPAIAIDYW 120

Query: 277 RLPKDATLKDVITVIRADEAHH 298
           RL  D+TL+DV+ V+RADEAHH
Sbjct: 121 RLAPDSTLRDVVMVVRADEAHH 142


>gi|330813949|ref|YP_004358188.1| alternative oxidase [Candidatus Pelagibacter sp. IMCC9063]
 gi|327487044|gb|AEA81449.1| alternative oxidase [Candidatus Pelagibacter sp. IMCC9063]
          Length = 217

 Score =  233 bits (595), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 106/196 (54%), Positives = 142/196 (72%)

Query: 113 LKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKS 172
           L  HH P    D++A+   K LR   D FF+++YG RA++LETVAAVPGM+ GML HLKS
Sbjct: 3   LDSHHKPENISDRIAFGFTKFLRFVADTFFKKKYGHRAVVLETVAAVPGMIAGMLTHLKS 62

Query: 173 LRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLS 232
           +RK +   GWIK LL+EAENERMHLM  V + KP   ER+++L  Q +F   +  +Y++S
Sbjct: 63  IRKIEDDKGWIKTLLDEAENERMHLMIFVNIAKPTAMERVIILIAQFIFILMYLFIYIIS 122

Query: 233 PKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIR 292
            + AHR+VGY EEEA++SYTE+L ++DSG ++N PAP IAIDY+ LP  ATL+DV+  +R
Sbjct: 123 KRTAHRIVGYFEEEAVYSYTEFLDELDSGKMKNEPAPKIAIDYYSLPLHATLRDVVVRVR 182

Query: 293 ADEAHHRDVNHFASDI 308
            DEA HRDVNH  ++I
Sbjct: 183 EDEAGHRDVNHSYANI 198


>gi|197106479|ref|YP_002131856.1| Alternative oxidase [Phenylobacterium zucineum HLK1]
 gi|196479899|gb|ACG79427.1| Alternative oxidase [Phenylobacterium zucineum HLK1]
          Length = 229

 Score =  233 bits (593), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 122/198 (61%), Positives = 147/198 (74%), Gaps = 1/198 (0%)

Query: 112 DLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLK 171
           DL  HH P    D+VAY  VK LR   D FF +RYG RA++LETVAAVPGMVG  L HLK
Sbjct: 7   DLTVHHKPRGLSDRVAYGFVKALRFCADTFFAKRYGHRAVVLETVAAVPGMVGATLNHLK 66

Query: 172 SLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLL 231
            LR+ +   GWIK L++EAENERMHLMT +E+ KP  +ER +V+  Q VF+  FF LYL+
Sbjct: 67  CLRRMEDDRGWIKTLMDEAENERMHLMTFIEVAKPTLFERFVVVAAQWVFYLFFFFLYLI 126

Query: 232 SPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVI 291
           SPK AHRVVGY EEEA+ SYT YL +ID G  ENV AP +A  YW LP+DATL+DV+ V+
Sbjct: 127 SPKTAHRVVGYFEEEAVISYTHYLAEIDEGRSENVAAPELAKRYWNLPEDATLRDVVEVV 186

Query: 292 RADEAHHRDVNH-FASDI 308
           RADEAHHRDVNH FA+++
Sbjct: 187 RADEAHHRDVNHGFANEL 204


>gi|350530260|ref|ZP_08909201.1| hypothetical protein VrotD_04015 [Vibrio rotiferianus DAT722]
          Length = 211

 Score =  230 bits (586), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 109/192 (56%), Positives = 141/192 (73%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRK 175
           H   +   + VA R  KLL+   ++F+ ++Y  RA++LET+AAVPGMV GM  HLK+LR+
Sbjct: 8   HKKASKLSEYVALRITKLLKFTLNIFYGKKYAKRAVILETIAAVPGMVAGMFNHLKALRR 67

Query: 176 FQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKL 235
            +   GWI+ LL+EAENERMHLM  +++ KP   ER+LVL  QGVF   + ++YLLS K+
Sbjct: 68  MKDDEGWIRELLDEAENERMHLMIFLDIAKPSLIERLLVLLGQGVFILVYSIIYLLSSKI 127

Query: 236 AHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADE 295
           AHRVVGY EEEA +SYTEYL+ IDSG +ENVPAP +AIDY++LP DA L+DVI  IR DE
Sbjct: 128 AHRVVGYFEEEACNSYTEYLEKIDSGEVENVPAPTLAIDYYKLPADAMLRDVILRIREDE 187

Query: 296 AHHRDVNHFASD 307
           A HRD NH  +D
Sbjct: 188 AGHRDRNHGFAD 199


>gi|444427732|ref|ZP_21223103.1| hypothetical protein B878_17259 [Vibrio campbellii CAIM 519 = NBRC
           15631]
 gi|444239030|gb|ELU50610.1| hypothetical protein B878_17259 [Vibrio campbellii CAIM 519 = NBRC
           15631]
          Length = 211

 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 110/195 (56%), Positives = 142/195 (72%), Gaps = 1/195 (0%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRK 175
           H   +   + VA R  KLL+   ++F+ ++Y  RA++LET+AAVPGMV GM  HLK+LR+
Sbjct: 8   HKKASKLSEYVALRITKLLKFTLNIFYGKKYAKRAVILETIAAVPGMVAGMFNHLKALRR 67

Query: 176 FQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKL 235
            +   GWI+ LL+EAENERMHLM  +++ KP   ER+LVL  QGVF   +  +YLLS K+
Sbjct: 68  MKDDEGWIRELLDEAENERMHLMIFLDIAKPSLIERLLVLLGQGVFILVYSFIYLLSSKI 127

Query: 236 AHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADE 295
           AHRVVGY EEEA +SYTEYL+ IDSG +ENVPAP +A+DY++LP DA L+DVI  IR DE
Sbjct: 128 AHRVVGYFEEEACNSYTEYLEKIDSGEVENVPAPTLAVDYYKLPADAMLRDVILRIREDE 187

Query: 296 AHHRDVNH-FASDIQ 309
           A HRD NH FA D +
Sbjct: 188 AGHRDRNHGFADDYE 202


>gi|424032045|ref|ZP_17771466.1| alternative oxidase family protein [Vibrio cholerae HENC-01]
 gi|408876457|gb|EKM15574.1| alternative oxidase family protein [Vibrio cholerae HENC-01]
          Length = 211

 Score =  229 bits (583), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 109/192 (56%), Positives = 140/192 (72%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRK 175
           H   +   + VA R  KLL+   ++F+ ++Y  RA++LET+AAVPGMV GM  HLK+LR+
Sbjct: 8   HKKASKLSEYVALRITKLLKFTLNIFYGKKYAKRAVILETIAAVPGMVAGMFNHLKALRR 67

Query: 176 FQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKL 235
            +   GWI+ LL+EAENERMHLM  +++ KP   ER+LVL  QGVF   +  +YLLS K+
Sbjct: 68  MKDDEGWIRELLDEAENERMHLMIFLDIAKPSLVERLLVLLGQGVFIVVYSFIYLLSSKI 127

Query: 236 AHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADE 295
           AHRVVGY EEEA +SYTEYL+ IDSG +ENVPAP +AIDY++LP DA L+DVI  IR DE
Sbjct: 128 AHRVVGYFEEEACNSYTEYLEKIDSGEVENVPAPTLAIDYYKLPTDAMLRDVILRIREDE 187

Query: 296 AHHRDVNHFASD 307
           A HRD NH  +D
Sbjct: 188 AGHRDRNHGFAD 199


>gi|67906549|gb|AAY82655.1| predicted alternative respiratory pathway oxidase [uncultured
           bacterium MedeBAC49C08]
          Length = 213

 Score =  229 bits (583), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 110/193 (56%), Positives = 135/193 (69%)

Query: 115 KHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLR 174
           KH  P    D+  Y   + LRI  DLFF++RYG RA++LETVAAVPGMV GML H KSLR
Sbjct: 18  KHKYPHGLSDRSGYLITRALRIAADLFFRKRYGHRAVVLETVAAVPGMVAGMLHHFKSLR 77

Query: 175 KFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPK 234
                 G IK LL+EAENERMHLMT +E+ KP  +ER+LVL+ Q VF   +F LY+    
Sbjct: 78  SMTDDDGIIKELLDEAENERMHLMTFIEISKPTLFERLLVLSAQIVFGTFYFFLYVFFRG 137

Query: 235 LAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRAD 294
            AHR++GY EEEA+ SYTE+L +ID G+IENV AP IA+DYW L   ATL+DV+  +R D
Sbjct: 138 TAHRMIGYFEEEAVTSYTEFLDEIDKGTIENVAAPKIAVDYWNLGNKATLRDVVVAVRND 197

Query: 295 EAHHRDVNHFASD 307
           EA HRD NH  +D
Sbjct: 198 EAGHRDKNHEIAD 210


>gi|424037571|ref|ZP_17776332.1| alternative oxidase family protein [Vibrio cholerae HENC-02]
 gi|408895390|gb|EKM31796.1| alternative oxidase family protein [Vibrio cholerae HENC-02]
          Length = 211

 Score =  229 bits (583), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 109/192 (56%), Positives = 140/192 (72%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRK 175
           H   +   + VA R  KLL+   ++F+ ++Y  RA++LET+AAVPGMV GM  HLK+LR+
Sbjct: 8   HKKASKLSEYVALRITKLLKFTLNIFYGKKYAKRAVILETIAAVPGMVAGMFNHLKALRR 67

Query: 176 FQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKL 235
            +   GWI+ LL+EAENERMHLM  +++ KP   ER+LVL  QGVF   +  +YLLS K+
Sbjct: 68  MKDDEGWIRELLDEAENERMHLMIFLDIAKPSLVERLLVLLGQGVFIVVYSFIYLLSSKI 127

Query: 236 AHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADE 295
           AHRVVGY EEEA +SYTEYL+ IDSG +ENVPAP +AIDY++LP DA L+DVI  IR DE
Sbjct: 128 AHRVVGYFEEEACNSYTEYLEKIDSGEVENVPAPTLAIDYYKLPTDAMLRDVILRIREDE 187

Query: 296 AHHRDVNHFASD 307
           A HRD NH  +D
Sbjct: 188 AGHRDRNHGFAD 199


>gi|269959615|ref|ZP_06173996.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|424047885|ref|ZP_17785441.1| alternative oxidase family protein [Vibrio cholerae HENC-03]
 gi|269835673|gb|EEZ89751.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|408883195|gb|EKM21982.1| alternative oxidase family protein [Vibrio cholerae HENC-03]
          Length = 211

 Score =  228 bits (581), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 108/192 (56%), Positives = 140/192 (72%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRK 175
           H   +   + +A R  KLL+   ++F+ ++Y  RA++LET+AAVPGMV GM  HLK+LR+
Sbjct: 8   HKKASKLSEYIALRITKLLKFTLNIFYGKKYAKRAVILETIAAVPGMVAGMFNHLKALRR 67

Query: 176 FQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKL 235
            +   GWI+ LL+EAENERMHLM  +++ KP   ER+LVL  QGVF   +  +YLLS K+
Sbjct: 68  MKDDEGWIRELLDEAENERMHLMIFLDIAKPSLVERLLVLLGQGVFIVVYSFIYLLSSKI 127

Query: 236 AHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADE 295
           AHRVVGY EEEA +SYTEYL+ IDSG +ENVPAP +AIDY++LP DA L+DVI  IR DE
Sbjct: 128 AHRVVGYFEEEACNSYTEYLEKIDSGEVENVPAPTLAIDYYKLPADAMLRDVILRIREDE 187

Query: 296 AHHRDVNHFASD 307
           A HRD NH  +D
Sbjct: 188 AGHRDRNHGFAD 199


>gi|156973270|ref|YP_001444177.1| hypothetical protein VIBHAR_00951 [Vibrio harveyi ATCC BAA-1116]
 gi|388600478|ref|ZP_10158874.1| hypothetical protein VcamD_11319 [Vibrio campbellii DS40M4]
 gi|156524864|gb|ABU69950.1| hypothetical protein VIBHAR_00951 [Vibrio harveyi ATCC BAA-1116]
          Length = 211

 Score =  228 bits (581), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 108/192 (56%), Positives = 140/192 (72%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRK 175
           H   +   + VA R  KLL+   ++F+ ++Y  RA++LET+AAVPGMV GM  HLK+LR+
Sbjct: 8   HKKASKLSEYVALRITKLLKFTLNIFYGKKYAKRAVILETIAAVPGMVAGMFNHLKALRR 67

Query: 176 FQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKL 235
            +   GWI+ LL+EAENERMHLM  +++ KP   ER+LVL  QGVF   +  +YLLS K+
Sbjct: 68  MKDDEGWIRELLDEAENERMHLMIFLDIAKPSLIERLLVLLGQGVFILVYSFIYLLSSKI 127

Query: 236 AHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADE 295
           AHRVVGY EEEA +SYTEYL+ IDSG +ENVPAP +A+DY++LP DA L+DVI  IR DE
Sbjct: 128 AHRVVGYFEEEACNSYTEYLEKIDSGEVENVPAPTLAVDYYKLPADAMLRDVILRIREDE 187

Query: 296 AHHRDVNHFASD 307
           A HRD NH  +D
Sbjct: 188 AGHRDRNHGFAD 199


>gi|59711185|ref|YP_203961.1| alternative oxidase 1 [Vibrio fischeri ES114]
 gi|59479286|gb|AAW85073.1| alternative oxidase 1 [Vibrio fischeri ES114]
          Length = 211

 Score =  227 bits (579), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 110/206 (53%), Positives = 140/206 (67%), Gaps = 4/206 (1%)

Query: 115 KHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLR 174
           KH       +K+AY+  + L+   ++F+  +Y  RA++LET+AAVPGMV GM  HLK+LR
Sbjct: 7   KHKATNKISEKIAYKITQCLKFLLNIFYGSKYAKRAVILETIAAVPGMVAGMFNHLKALR 66

Query: 175 KFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPK 234
           + +   GWI+ LL EAENERMHLM  +++ KP+W ER+LVL  Q VF   +  +YLLS K
Sbjct: 67  RMKDDQGWIQELLSEAENERMHLMIFLDIAKPRWIERLLVLLGQAVFIVVYSFIYLLSSK 126

Query: 235 LAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRAD 294
           +AHRVVGY EEEA  SYTEYL  ID G++EN  AP IAIDY++LP DA L+DVI  IR D
Sbjct: 127 IAHRVVGYFEEEACKSYTEYLAKIDEGTVENEAAPQIAIDYYQLPSDAMLRDVILKIRND 186

Query: 295 EAHHRDVNHFASDIQFQGKELRDAPA 320
           EA HRD NH  +D      E  D PA
Sbjct: 187 EAKHRDRNHSFAD----AYETHDLPA 208


>gi|197334925|ref|YP_002155335.1| alternative oxidase 2 [Vibrio fischeri MJ11]
 gi|197316415|gb|ACH65862.1| alternative oxidase 2 [Vibrio fischeri MJ11]
          Length = 211

 Score =  227 bits (579), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 110/206 (53%), Positives = 140/206 (67%), Gaps = 4/206 (1%)

Query: 115 KHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLR 174
           KH       +K+AY+  + L+   ++F+  +Y  RA++LET+AAVPGMV GM  HLK+LR
Sbjct: 7   KHKATNKISEKIAYKITQCLKFLLNIFYGSKYAKRAVILETIAAVPGMVAGMFNHLKALR 66

Query: 175 KFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPK 234
           + +   GWI+ LL EAENERMHLM  +++ KP+W ER+LVL  Q VF   +  +YLLS K
Sbjct: 67  RMKDDQGWIQELLSEAENERMHLMIFLDIAKPRWIERLLVLLGQAVFIVVYSFIYLLSSK 126

Query: 235 LAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRAD 294
           +AHRVVGY EEEA  SYTEYL  ID G++EN  AP IAIDY++LP DA L+DVI  IR D
Sbjct: 127 IAHRVVGYFEEEACKSYTEYLAKIDEGAVENEAAPQIAIDYYQLPSDAMLRDVILKIRND 186

Query: 295 EAHHRDVNHFASDIQFQGKELRDAPA 320
           EA HRD NH  +D      E  D PA
Sbjct: 187 EAKHRDRNHSFAD----AYETHDLPA 208


>gi|209694266|ref|YP_002262194.1| hypothetical protein VSAL_I0677 [Aliivibrio salmonicida LFI1238]
 gi|208008217|emb|CAQ78362.1| putative membrane protein [Aliivibrio salmonicida LFI1238]
          Length = 212

 Score =  227 bits (578), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 111/206 (53%), Positives = 141/206 (68%), Gaps = 4/206 (1%)

Query: 115 KHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLR 174
           KH   T   +++AY+  + L+   ++F+  +Y  RA++LET+AAVPGMV GM  HLK+LR
Sbjct: 8   KHKATTKMSERIAYKITQCLKFLLNIFYGSQYAKRAVILETIAAVPGMVAGMFNHLKALR 67

Query: 175 KFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPK 234
           + +   GWI+ LL EAENERMHLM  +++ KP+W ER LVL  QGVF   +  +YLLS K
Sbjct: 68  RMKDDEGWIRELLNEAENERMHLMIFLDIAKPRWIERTLVLLGQGVFMVVYSFIYLLSSK 127

Query: 235 LAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRAD 294
           +AHRVVGY EEEA  SYTEYL  ID+G +EN  AP IAIDY++LP DA L+DVI  IR D
Sbjct: 128 VAHRVVGYFEEEACKSYTEYLSKIDNGDVENEAAPQIAIDYYQLPNDALLRDVILKIRDD 187

Query: 295 EAHHRDVNHFASDIQFQGKELRDAPA 320
           EA HRD NH  +D      E  D PA
Sbjct: 188 EAKHRDRNHSFAD----AYENHDLPA 209


>gi|118594227|ref|ZP_01551574.1| NADH:flavin oxidoreductase/NADH oxidase [Methylophilales bacterium
           HTCC2181]
 gi|118440005|gb|EAV46632.1| NADH:flavin oxidoreductase/NADH oxidase [Methylophilales bacterium
           HTCC2181]
          Length = 589

 Score =  226 bits (577), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 108/195 (55%), Positives = 136/195 (69%)

Query: 113 LKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKS 172
           + KH  P    D VA    K LR+  D FF +RYG RA++LETVAAVPGMV GM +HLK 
Sbjct: 1   MSKHRTPENISDFVALFITKFLRLLADTFFSKRYGHRAVVLETVAAVPGMVAGMWIHLKC 60

Query: 173 LRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLS 232
           LRK     GWIK LL+EAENERMHLMT +E+ KP W+ER L+L  Q +F++ +F+LY+  
Sbjct: 61  LRKMTSDRGWIKTLLDEAENERMHLMTFIEIAKPNWFERGLILFAQALFWHFYFILYVFF 120

Query: 233 PKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIR 292
           P+ AHR+VGY EEEA+ SYT YL+ +++    NV AP IAI+YW+L  DA L DVI V+R
Sbjct: 121 PRTAHRLVGYFEEEAVISYTNYLEQVENDLSLNVAAPQIAINYWKLKPDARLIDVIKVVR 180

Query: 293 ADEAHHRDVNHFASD 307
            DEA H  VNH  +D
Sbjct: 181 DDEAGHAKVNHTLAD 195


>gi|90414281|ref|ZP_01222260.1| alternative oxidase [Photobacterium profundum 3TCK]
 gi|90324619|gb|EAS41166.1| alternative oxidase [Photobacterium profundum 3TCK]
          Length = 211

 Score =  226 bits (575), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 106/193 (54%), Positives = 136/193 (70%)

Query: 115 KHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLR 174
           KH   +   + VAY+  + L+   ++F+  +Y  RA++LET+AAVPGMV GM  HLK+LR
Sbjct: 7   KHRTASKLSEHVAYKITQCLKFLLNIFYGTKYAKRAVILETIAAVPGMVAGMFNHLKALR 66

Query: 175 KFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPK 234
           + +   GWI+ LL+EAENERMHLM  + + KP W ER LVL  QG F   + ++YLLS K
Sbjct: 67  RMKDDEGWIRELLDEAENERMHLMIFLNIAKPSWVERALVLIGQGAFIVVYSLIYLLSSK 126

Query: 235 LAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRAD 294
           +AHRVVGY EEEA  SYTEYL  ID+G +ENV AP IAI+Y++LP DA L+DVI  IR D
Sbjct: 127 IAHRVVGYFEEEACKSYTEYLSKIDAGEVENVAAPKIAIEYYQLPLDAMLRDVIVKIRND 186

Query: 295 EAHHRDVNHFASD 307
           EA H D NHF +D
Sbjct: 187 EAKHHDQNHFFAD 199


>gi|90578977|ref|ZP_01234787.1| alternative oxidase [Photobacterium angustum S14]
 gi|90439810|gb|EAS64991.1| alternative oxidase [Photobacterium angustum S14]
          Length = 211

 Score =  226 bits (575), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 107/200 (53%), Positives = 142/200 (71%), Gaps = 1/200 (0%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRK 175
           H   T F +++AY+  +LL+   ++F+ ++Y  RA++LET+AAVPGMV GM  HLK+LR+
Sbjct: 8   HRETTKFSERLAYKITQLLKYSLNIFYGKKYAKRAVILETIAAVPGMVAGMFNHLKALRR 67

Query: 176 FQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKL 235
            +   GWIK LL EA+NERMHLM  +++ KP W ER LVL  Q VF   + ++YL S K+
Sbjct: 68  MKDDEGWIKELLSEADNERMHLMIFLDIAKPSWVERALVLLGQAVFICVYSIIYLTSSKI 127

Query: 236 AHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADE 295
           AHRVVGY EEEA  SYTE+L+ IDSG +ENV AP IAI+Y+ L  DA L+DV+  IR DE
Sbjct: 128 AHRVVGYFEEEACKSYTEFLEKIDSGELENVAAPQIAINYYELHDDAKLRDVVLRIREDE 187

Query: 296 AHHRDVNHFASDIQFQGKEL 315
           A HRD NH  +D  +Q K+L
Sbjct: 188 AKHRDRNHNFADC-YQNKDL 206


>gi|163803376|ref|ZP_02197252.1| hypothetical protein 1103602000422_AND4_18992 [Vibrio sp. AND4]
 gi|159172838|gb|EDP57680.1| hypothetical protein AND4_18992 [Vibrio sp. AND4]
          Length = 211

 Score =  224 bits (571), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 108/197 (54%), Positives = 143/197 (72%), Gaps = 1/197 (0%)

Query: 112 DLKKHHVPTTFLDK-VAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHL 170
           D K  H   + L + +A R  +LL+   ++F+ ++Y  RA++LET+AAVPGMV GM  HL
Sbjct: 3   DFKLTHKKASKLSEYIALRITRLLKFTLNIFYGKKYAKRAVILETIAAVPGMVAGMFNHL 62

Query: 171 KSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYL 230
           K+LR+ +   GWI+ LL+EAENERMHLM  +++ KP + ER+LVL  QG F   + ++YL
Sbjct: 63  KALRRMKDDEGWIRELLDEAENERMHLMIFLDIAKPSFVERLLVLLGQGAFILVYSLIYL 122

Query: 231 LSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITV 290
           LS K+AHRVVGY EEEA +SYTEYL+ IDSG +ENVPAP +AI Y++LP DA L+DVI  
Sbjct: 123 LSSKIAHRVVGYFEEEACNSYTEYLEKIDSGEVENVPAPTLAIGYYKLPADAMLRDVILR 182

Query: 291 IRADEAHHRDVNHFASD 307
           IR DEA HRD NH  +D
Sbjct: 183 IREDEAGHRDRNHGFAD 199


>gi|89072986|ref|ZP_01159533.1| alternative oxidase [Photobacterium sp. SKA34]
 gi|89051204|gb|EAR56660.1| alternative oxidase [Photobacterium sp. SKA34]
          Length = 211

 Score =  224 bits (571), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 107/200 (53%), Positives = 141/200 (70%), Gaps = 1/200 (0%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRK 175
           H     F +++AY+  +LL+   ++F+ ++Y  RA++LET+AAVPGMV GM  HLK+LR+
Sbjct: 8   HRETNKFSERLAYKITQLLKYSLNIFYGKKYAKRAVILETIAAVPGMVAGMFNHLKALRR 67

Query: 176 FQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKL 235
            +   GWIK LL EA+NERMHLM  +++ KP W ER LVL  Q VF   + ++YL S K+
Sbjct: 68  MKDDEGWIKELLSEADNERMHLMIFLDIAKPSWVERGLVLLGQAVFICVYSIIYLTSSKI 127

Query: 236 AHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADE 295
           AHRVVGY EEEA  SYTE+L+ IDSG +ENV AP IAI+Y+ L  DA L+DV+  IR DE
Sbjct: 128 AHRVVGYFEEEACKSYTEFLEKIDSGELENVAAPQIAINYYELHDDAKLRDVVLRIREDE 187

Query: 296 AHHRDVNHFASDIQFQGKEL 315
           A HRD NH  +D  +Q KEL
Sbjct: 188 AKHRDRNHNFADC-YQNKEL 206


>gi|387593301|gb|EIJ88325.1| alternative oxidase superfamily protein [Nematocida parisii ERTm3]
 gi|387595986|gb|EIJ93608.1| alternative oxidase superfamily protein [Nematocida parisii ERTm1]
          Length = 232

 Score =  224 bits (570), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 114/195 (58%), Positives = 144/195 (73%), Gaps = 1/195 (0%)

Query: 109 LSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLL 168
           + +++ KH     F D  A+RTVK LR+  D+ F RRY  RA++LETVAA+PGMVGG++ 
Sbjct: 29  VDVEVGKHLPQKDFSDIFAWRTVKGLRMIADVVFYRRYVHRAIVLETVAAIPGMVGGVIR 88

Query: 169 HLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVL 228
           HLKSLR  +     I+ LL EAENERMHLMT +E+ KP   ER++V+ +QGVFFNA+ +L
Sbjct: 89  HLKSLRNMKDDSN-IRILLAEAENERMHLMTWMEVAKPLLIERLIVMGLQGVFFNAYLLL 147

Query: 229 YLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVI 288
           YL+S + AHR+VGYLEEEAI SYTE +K+I++G I NVPAP IA  YW LP +ATL DV 
Sbjct: 148 YLISKRTAHRLVGYLEEEAIISYTEMVKEIEAGIIPNVPAPEIAKKYWNLPSNATLLDVT 207

Query: 289 TVIRADEAHHRDVNH 303
             IRADEA HRD NH
Sbjct: 208 LAIRADEATHRDTNH 222


>gi|378754341|gb|EHY64375.1| alternative oxidase superfamily protein [Nematocida sp. 1 ERTm2]
          Length = 232

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 115/206 (55%), Positives = 149/206 (72%), Gaps = 2/206 (0%)

Query: 109 LSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLL 168
           + +++ KH     F D  A+RTVK LR+  D+ F +RY  RA++LETVAA+PGMVGG++ 
Sbjct: 29  VDVEVGKHLPQRDFSDVFAWRTVKGLRMIADVVFYKRYVHRAIVLETVAAIPGMVGGLIR 88

Query: 169 HLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVL 228
           HLKSLRK +     I+ LL EAENERMHLMT +E+ KP   ER++V+ +QGVFFNA+ +L
Sbjct: 89  HLKSLRKMEDDTN-IRVLLAEAENERMHLMTWMEVAKPLLLERLIVMALQGVFFNAYLML 147

Query: 229 YLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVI 288
           Y++S K AHR+VGYLEEEAI SYTE +++I +G I N PAP IA  YW L +DATL DV 
Sbjct: 148 YIVSAKTAHRLVGYLEEEAIISYTEMVREIQAGIIPNTPAPEIAKKYWNLGEDATLLDVT 207

Query: 289 TVIRADEAHHRDVNHFASDIQFQGKE 314
             IRADEA HRD NH  +D+  +G E
Sbjct: 208 LAIRADEATHRDTNHEIADV-LEGIE 232


>gi|289164721|ref|YP_003454859.1| oxidase [Legionella longbeachae NSW150]
 gi|288857894|emb|CBJ11749.1| putative alternative oxidase (eukaryotic-like) [Legionella
           longbeachae NSW150]
          Length = 228

 Score =  221 bits (564), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 108/192 (56%), Positives = 136/192 (70%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRK 175
           H    TF D+ AY  VK  R   D FFQRRYG RA++LETVAAVPGMVG  LLHL+ LRK
Sbjct: 5   HKPAKTFSDRFAYGLVKFFRFFADTFFQRRYGNRAIVLETVAAVPGMVGAALLHLRCLRK 64

Query: 176 FQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKL 235
            ++  GWIK LL+EAENERMHL+T + + KP W+ER ++   Q +F   +F++Y++S K 
Sbjct: 65  IKNDEGWIKTLLDEAENERMHLITFMYIAKPNWFERFIIFIAQAIFVILYFLMYVISSKT 124

Query: 236 AHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADE 295
           AHR VGYLEEEA+ SYT YL+++D G IEN PAP IA  YW L  +A L+DV+  +R DE
Sbjct: 125 AHRFVGYLEEEAVISYTHYLQELDEGHIENCPAPEIAKSYWGLSSNAQLRDVLLAVRKDE 184

Query: 296 AHHRDVNHFASD 307
             HRDVNH  +D
Sbjct: 185 EDHRDVNHQLAD 196


>gi|330446299|ref|ZP_08309951.1| alternative oxidase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328490490|dbj|GAA04448.1| alternative oxidase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 211

 Score =  221 bits (563), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 105/200 (52%), Positives = 140/200 (70%), Gaps = 1/200 (0%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRK 175
           H       +++AY+  +LL+   ++F+ ++Y  RA++LET+AAVPGMV GM  HLK+LR+
Sbjct: 8   HRETNKISERLAYKITQLLKFSLNIFYGKKYAKRAVILETIAAVPGMVAGMFNHLKALRR 67

Query: 176 FQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKL 235
            +   GWIK LL EA+NERMHLM  +++ KP W ER LVL  Q VF   + ++YL S K+
Sbjct: 68  MKDDEGWIKELLSEADNERMHLMIFLDIAKPSWIERGLVLLGQAVFICVYSIIYLCSSKI 127

Query: 236 AHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADE 295
           AHRVVGY EEEA  SYTE+L+ IDSG +ENV AP IAI Y++L  DA L+DV+  IR DE
Sbjct: 128 AHRVVGYFEEEACKSYTEFLEKIDSGKLENVAAPDIAIKYYQLQDDARLRDVVLRIREDE 187

Query: 296 AHHRDVNHFASDIQFQGKEL 315
           A HRD NH  +D  +Q K+L
Sbjct: 188 AKHRDRNHNFADC-YQNKDL 206


>gi|270156838|ref|ZP_06185495.1| alternative oxidase/tellurite resistance protein TehB [Legionella
           longbeachae D-4968]
 gi|269988863|gb|EEZ95117.1| alternative oxidase/tellurite resistance protein TehB [Legionella
           longbeachae D-4968]
          Length = 503

 Score =  221 bits (562), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 108/192 (56%), Positives = 136/192 (70%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRK 175
           H    TF D+ AY  VK  R   D FFQRRYG RA++LETVAAVPGMVG  LLHL+ LRK
Sbjct: 5   HKPAKTFSDRFAYGLVKFFRFFADTFFQRRYGNRAIVLETVAAVPGMVGAALLHLRCLRK 64

Query: 176 FQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKL 235
            ++  GWIK LL+EAENERMHL+T + + KP W+ER ++   Q +F   +F++Y++S K 
Sbjct: 65  IKNDEGWIKTLLDEAENERMHLITFMYIAKPNWFERFIIFIAQAIFVILYFLMYVISSKT 124

Query: 236 AHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADE 295
           AHR VGYLEEEA+ SYT YL+++D G IEN PAP IA  YW L  +A L+DV+  +R DE
Sbjct: 125 AHRFVGYLEEEAVISYTHYLQELDEGHIENCPAPEIAKSYWGLSSNAQLRDVLLAVRKDE 184

Query: 296 AHHRDVNHFASD 307
             HRDVNH  +D
Sbjct: 185 EDHRDVNHQLAD 196


>gi|119947000|ref|YP_944680.1| alternative oxidase [Psychromonas ingrahamii 37]
 gi|119865604|gb|ABM05081.1| alternative oxidase [Psychromonas ingrahamii 37]
          Length = 211

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 102/192 (53%), Positives = 134/192 (69%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRK 175
           H  P    + +AY+  + L+   +LF+ ++Y  RA++LET+AAVPGMV GML HLK+LR+
Sbjct: 8   HQKPNKVSEYIAYKITQSLKFMLNLFYGKKYAKRAVILETIAAVPGMVAGMLNHLKALRR 67

Query: 176 FQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKL 235
            +   GWI+ LL+EAENERMHLM  +++ KP W ER LVL  QG+F   +  LY+LS K 
Sbjct: 68  MRDDQGWIRELLDEAENERMHLMIFLDIAKPTWIERTLVLLGQGIFLIIYTFLYILSSKT 127

Query: 236 AHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADE 295
            HRVVGY EEEA  SY+E+L+ ID+G +ENVPAP IA DY+ L  DA L+DV+  IR DE
Sbjct: 128 GHRVVGYFEEEACKSYSEFLQKIDAGEVENVPAPKIAKDYYALDDDACLRDVVLCIREDE 187

Query: 296 AHHRDVNHFASD 307
             HRD NH  +D
Sbjct: 188 GKHRDRNHEFAD 199


>gi|388455982|ref|ZP_10138277.1| oxidase [Fluoribacter dumoffii Tex-KL]
          Length = 220

 Score =  219 bits (557), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 109/192 (56%), Positives = 135/192 (70%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRK 175
           H    T  DK+AY  VK  R   D FFQ+RYG RA++LETVAAVPGMVG  LLHL+ LRK
Sbjct: 5   HKPAKTISDKIAYGLVKFFRFFADTFFQKRYGNRAIVLETVAAVPGMVGAALLHLRCLRK 64

Query: 176 FQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKL 235
            ++  GWIK LLEEAENERMHL+T + + KP W+ER ++   Q +F   + V+Y+LS K 
Sbjct: 65  IKNDEGWIKTLLEEAENERMHLITFMYIAKPNWFERFIIFVAQALFVVLYLVMYVLSSKT 124

Query: 236 AHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADE 295
           AHR VGYLEEEA+ SYT YL+++D G IEN PAP IA  YW L  DA L++V+  +R DE
Sbjct: 125 AHRFVGYLEEEAVISYTHYLQELDEGRIENSPAPDIAKIYWGLASDARLREVLLAVRLDE 184

Query: 296 AHHRDVNHFASD 307
             HRDVNH  +D
Sbjct: 185 EEHRDVNHELAD 196


>gi|119713421|gb|ABL97483.1| possible alternative respiratory pathway oxidase [uncultured marine
           bacterium HF130_81H07]
          Length = 213

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 101/196 (51%), Positives = 133/196 (67%)

Query: 112 DLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLK 171
           ++  H +P +  D  A    K LR   D  F++RYG RA++LETVAAVPGMV G++ HL+
Sbjct: 13  EIAGHKLPISISDSFALGITKFLRNSADFLFKKRYGHRAVVLETVAAVPGMVAGVVHHLR 72

Query: 172 SLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLL 231
           SLR+ Q   G I+ +LEEAENERMHLMT +E+ +P  +ER L+   Q  F   +  LY+ 
Sbjct: 73  SLRRMQDDNGLIREMLEEAENERMHLMTFIEIAQPSTFERFLIFLAQIGFGTFYTFLYIF 132

Query: 232 SPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVI 291
             + AHR++GY EEEA+ SYTEYL +ID G IEN  AP IAI+YW L KDA+L+DV+  +
Sbjct: 133 FNRTAHRMIGYFEEEAVVSYTEYLDEIDKGQIENTQAPEIAINYWNLAKDASLRDVVIAV 192

Query: 292 RADEAHHRDVNHFASD 307
           R DEA HRD NH  +D
Sbjct: 193 RNDEAGHRDKNHLIAD 208


>gi|330790445|ref|XP_003283307.1| hypothetical protein DICPUDRAFT_44721 [Dictyostelium purpureum]
 gi|325086732|gb|EGC40117.1| hypothetical protein DICPUDRAFT_44721 [Dictyostelium purpureum]
          Length = 320

 Score =  217 bits (552), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 102/189 (53%), Positives = 138/189 (73%), Gaps = 1/189 (0%)

Query: 119 PTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQH 178
           P T  D  A  TV+LLR  ++LFF+ +Y   A++LET+A+VPG+ GG +LHL++LR  + 
Sbjct: 83  PKTIGDHFAKNTVQLLRKVSNLFFREKYIHYAIVLETIASVPGLCGGAMLHLRALRTME- 141

Query: 179 SGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHR 238
           S  WIKAL++E+ENER+HLM+ +EL KP   ER +V   Q VF+N + V Y +SPK+ HR
Sbjct: 142 SNNWIKALMDESENERIHLMSFIELTKPTLIERTMVAAAQAVFWNLYLVGYAISPKIMHR 201

Query: 239 VVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHH 298
           VVGYLE EA+ +YT +L DID+G +EN+PA  +AI+YW LP DATL+D+I VIR DE  H
Sbjct: 202 VVGYLEHEAVKTYTNFLADIDAGKVENIPASKLAIEYWGLPADATLRDMILVIREDEMDH 261

Query: 299 RDVNHFASD 307
           R VNH  S+
Sbjct: 262 RLVNHEISN 270


>gi|222635049|gb|EEE65181.1| hypothetical protein OsJ_20292 [Oryza sativa Japonica Group]
          Length = 130

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 102/131 (77%), Positives = 115/131 (87%), Gaps = 1/131 (0%)

Query: 195 MHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEY 254
           MHLMT +E VKP+WYER LVL VQ VFFNA+F+ YLLSPKLAHRVVGYLEEEAIH YTEY
Sbjct: 1   MHLMTFMEAVKPRWYERTLVLAVQRVFFNAYFLGYLLSPKLAHRVVGYLEEEAIHPYTEY 60

Query: 255 LKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKE 314
           LKDI++G IENVPAP IAIDYWRLP  ATLKDV+ ++RADEAHHRDVNHFASD+ F+G +
Sbjct: 61  LKDIEAGKIENVPAPPIAIDYWRLPAGATLKDVV-IVRADEAHHRDVNHFASDVHFRGMD 119

Query: 315 LRDAPAPLGYH 325
           L+D PAPL YH
Sbjct: 120 LKDTPAPLDYH 130


>gi|222631917|gb|EEE64049.1| hypothetical protein OsJ_18878 [Oryza sativa Japonica Group]
          Length = 131

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 99/131 (75%), Positives = 114/131 (87%)

Query: 195 MHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEY 254
           MHLMT +E+ KP+WYER LVL VQ VFFNA+F+ YLLSPKLAHRVVGYLE+EAIHSYT+Y
Sbjct: 1   MHLMTFMEVAKPRWYERTLVLAVQRVFFNAYFLGYLLSPKLAHRVVGYLEKEAIHSYTKY 60

Query: 255 LKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKE 314
           LKD ++G IENVPA  IAIDYWRLP  ATLKDV+ V+RA+EAHHRDVNHFASD+ FQG +
Sbjct: 61  LKDNEAGKIENVPASPIAIDYWRLPAGATLKDVVVVVRANEAHHRDVNHFASDVHFQGMD 120

Query: 315 LRDAPAPLGYH 325
           L+D PAPL YH
Sbjct: 121 LKDTPAPLDYH 131


>gi|449081284|sp|Q8NKE2.2|AOX_CRYNH RecName: Full=Alternative oxidase, mitochondrial; Flags: Precursor
 gi|405117524|gb|AFR92299.1| alternative oxidase [Cryptococcus neoformans var. grubii H99]
          Length = 401

 Score =  214 bits (546), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 117/283 (41%), Positives = 165/283 (58%), Gaps = 42/283 (14%)

Query: 67  EKGENGIVPSSYWGISRP--------KITREDGSPWPWNCFMPWETYRADLSIDLKKHHV 118
           EK +  +V S   G+  P         +  +  +   W  F P  T + +L+        
Sbjct: 67  EKSQGPVVGSEGRGVEGPHYQDQVSHNVLSDASTTGAWTMFNPIYTEK-ELNTVQVVGRA 125

Query: 119 PTTFLDKVAYRTVKLLR-------------IPTDLFFQR-----------------RYGC 148
           P TF DK A+RTVK LR             +P  +  Q+                 ++  
Sbjct: 126 PVTFGDKAAHRTVKFLRKCFDLLTGYTPYEVPASVLAQKPIPIAELRSKGKLLSDQKWLF 185

Query: 149 RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKW 208
           R ++LE++A VPGMVGG L HL+S+R  +  GGWI +LLEEAENERMHL+T + + +P  
Sbjct: 186 RIILLESIAGVPGMVGGTLRHLRSMRLLKRDGGWIHSLLEEAENERMHLLTFMTIAQPGI 245

Query: 209 YERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---EN 265
           + R LVL  QGVF+NAFF+ YL+SP++AHR VG LEEEA+ +YT  + D+++G I   ++
Sbjct: 246 FTRALVLAAQGVFYNAFFLTYLISPRIAHRFVGALEEEAVRTYTHCISDMEAGLIPEWKD 305

Query: 266 VPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDI 308
           +PAPAIAIDYWRLP  ++L DVI  +RADEA HR VNH  +++
Sbjct: 306 MPAPAIAIDYWRLPASSSLLDVIRAVRADEATHRFVNHSLANL 348


>gi|281211621|gb|EFA85783.1| alternative oxidase [Polysphondylium pallidum PN500]
          Length = 317

 Score =  214 bits (545), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 109/198 (55%), Positives = 135/198 (68%), Gaps = 1/198 (0%)

Query: 117 HVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKF 176
           H P    D VA   V LLR  ++L F+ +Y   A +LETVAAVPGMV GML HLK+LR+ 
Sbjct: 86  HQPQNISDNVARFAVWLLRKASNLVFKEKYIHYACVLETVAAVPGMVAGMLQHLKTLRRM 145

Query: 177 QHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLA 236
           +H+  WIK LL+EAENERMHLMT +E+  P   ER L+   QG ++NAF + YL+SPK A
Sbjct: 146 EHNN-WIKILLDEAENERMHLMTFMEISMPTKLERNLITLAQGAYWNAFLLFYLISPKTA 204

Query: 237 HRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEA 296
           HR  GYLEEEA+ +YT  L D+D+G +ENV AP IA +YW LP DA L+DVI VIR DE 
Sbjct: 205 HRFTGYLEEEAVITYTNMLHDLDAGKVENVEAPQIAREYWGLPDDAKLRDVILVIRQDEV 264

Query: 297 HHRDVNHFASDIQFQGKE 314
            H  VNH  S++   G E
Sbjct: 265 DHGHVNHQLSNMIATGNE 282


>gi|218197681|gb|EEC80108.1| hypothetical protein OsI_21855 [Oryza sativa Indica Group]
          Length = 130

 Score =  214 bits (545), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 101/131 (77%), Positives = 115/131 (87%), Gaps = 1/131 (0%)

Query: 195 MHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEY 254
           MHLMT +E VKP+WYER LVL VQ VFFNA+F+ YLLSPKLAHRVVGYLEEEAIH YTEY
Sbjct: 1   MHLMTFMEAVKPRWYERTLVLAVQRVFFNAYFLGYLLSPKLAHRVVGYLEEEAIHPYTEY 60

Query: 255 LKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKE 314
           LKDI++G IENVPAP IAIDYW+LP  ATLKDV+ ++RADEAHHRDVNHFASD+ F+G +
Sbjct: 61  LKDIEAGKIENVPAPPIAIDYWQLPAGATLKDVV-IVRADEAHHRDVNHFASDVHFRGMD 119

Query: 315 LRDAPAPLGYH 325
           L+D PAPL YH
Sbjct: 120 LKDTPAPLDYH 130


>gi|429965955|gb|ELA47952.1| hypothetical protein VCUG_00535 [Vavraia culicis 'floridensis']
          Length = 318

 Score =  214 bits (544), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 107/200 (53%), Positives = 139/200 (69%), Gaps = 2/200 (1%)

Query: 110 SIDLK--KHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGML 167
           SID +  KH VP +F D  A+  VK LR   DL+FQ+ Y  R ++LETVAA+PGMVGGM 
Sbjct: 108 SIDYESGKHFVPQSFSDTFAFLIVKGLRAFADLYFQKDYLRRVVVLETVAAIPGMVGGMF 167

Query: 168 LHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFV 227
            HL SLR  + +G  IK L+ EAENER HL+T + ++KP   +RML+   Q +FFN + V
Sbjct: 168 RHLYSLRNLEDNGEAIKKLVLEAENERQHLLTFLAVLKPNILDRMLIRLGQFLFFNGYMV 227

Query: 228 LYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDV 287
            Y ++PK AHR VGYLEEEA+ SY  + ++I  G I+NV AP I+ DYW LP++ATL DV
Sbjct: 228 FYFMTPKTAHRFVGYLEEEAVRSYDAFEEEILVGHIKNVDAPRISKDYWNLPEEATLVDV 287

Query: 288 ITVIRADEAHHRDVNHFASD 307
           +  +RADEA HRDVNH  +D
Sbjct: 288 VRAVRADEAEHRDVNHRMAD 307


>gi|58258419|ref|XP_566622.1| alternative oxidase 1 [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134106269|ref|XP_778145.1| hypothetical protein CNBA1450 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50260848|gb|EAL23498.1| hypothetical protein CNBA1450 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57222759|gb|AAW40803.1| alternative oxidase 1 [Cryptococcus neoformans var. neoformans
           JEC21]
          Length = 401

 Score =  213 bits (543), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 116/283 (40%), Positives = 165/283 (58%), Gaps = 42/283 (14%)

Query: 67  EKGENGIVPSSYWGISRP--------KITREDGSPWPWNCFMPWETYRADLSIDLKKHHV 118
           EK +  +V S   G+  P         +  +  +   W  F P  T + +L+        
Sbjct: 67  EKSQGPVVGSEGKGVEGPHYQDQASHNVLSDASTTGAWTMFNPIYTEK-ELNTVQVVGRA 125

Query: 119 PTTFLDKVAYRTVKLLR-------------IPTDLFFQR-----------------RYGC 148
           P TF DK A++TVK LR             +P  +  Q+                 ++  
Sbjct: 126 PVTFGDKAAHKTVKFLRKCFDLLTGYTPYEVPASVLAQKPIPIAELRSKGKLLSDQKWLF 185

Query: 149 RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKW 208
           R ++LE++A VPGMVGG L HL+S+R  +  GGWI +LLEEAENERMHL+T + + +P  
Sbjct: 186 RIILLESIAGVPGMVGGTLRHLRSMRLLKRDGGWIHSLLEEAENERMHLLTFMTIAQPGI 245

Query: 209 YERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---EN 265
           + R LVL  QGVF+NAFF+ YL+SP++AHR VG LEEEA+ +YT  + D+++G I   ++
Sbjct: 246 FTRALVLAAQGVFYNAFFLTYLISPRIAHRFVGALEEEAVRTYTHCISDMEAGLIPEWKD 305

Query: 266 VPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDI 308
           +PAPAIAIDYWRLP  ++L DVI  +RADEA HR VNH  +++
Sbjct: 306 MPAPAIAIDYWRLPASSSLLDVIRAVRADEATHRFVNHSLANL 348


>gi|149925323|ref|ZP_01913587.1| Alternative oxidase [Limnobacter sp. MED105]
 gi|149825440|gb|EDM84648.1| Alternative oxidase [Limnobacter sp. MED105]
          Length = 204

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 106/190 (55%), Positives = 133/190 (70%), Gaps = 1/190 (0%)

Query: 119 PTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQH 178
           P  F DK A       R   D FF +RYG RA++LETVA VPGMV GM +HLKSLRK + 
Sbjct: 10  PKDFSDKFAKSLTMFFRWFADTFFAKRYGHRAVILETVAGVPGMVAGMWIHLKSLRKMKT 69

Query: 179 S-GGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAH 237
             G  I+ LLEEAENERMHLM  +E+ KP   ER+LVL  Q VF++ +F+LY+  PK AH
Sbjct: 70  GYGPTIRTLLEEAENERMHLMIFIEIAKPSVGERLLVLFAQLVFWHFYFILYVFFPKTAH 129

Query: 238 RVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAH 297
           R+VGY E +A+ SYT+YL +ID+G IEN+ AP IAIDY++LP DA L+DV+  +R DE  
Sbjct: 130 RMVGYFENQAVVSYTDYLAEIDAGRIENIAAPKIAIDYYKLPADAKLRDVVIAVRNDEQG 189

Query: 298 HRDVNHFASD 307
           H DVNH  +D
Sbjct: 190 HADVNHEMAD 199


>gi|321251112|ref|XP_003191963.1| alternative oxidase 1 [Cryptococcus gattii WM276]
 gi|317458431|gb|ADV20176.1| Alternative oxidase 1 [Cryptococcus gattii WM276]
          Length = 400

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 117/283 (41%), Positives = 165/283 (58%), Gaps = 42/283 (14%)

Query: 67  EKGENGIVPSSYWGISRP--------KITREDGSPWPWNCFMPWETYRADLSIDLKKHHV 118
           EK +  +V S   G+  P         +  +  +   W  F P  T + +L+        
Sbjct: 66  EKSQGPVVGSEGKGVEGPHYQDQVSHNVLSDASTTGAWTMFNPIYTDK-ELNTVQVVGRA 124

Query: 119 PTTFLDKVAYRTVKLLR-------------IPTDLFFQR-----------------RYGC 148
           P TF DK A++TVK LR             IP  +  Q+                 ++  
Sbjct: 125 PVTFGDKAAHKTVKFLRKCFDFITGYTPYEIPASVLAQKPIPIAELRSKGKLLSDQKWLF 184

Query: 149 RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKW 208
           R ++LE++A VPGMVGG L HL+S+R  +  GGWI +LLEEAENERMHL+T + + +P  
Sbjct: 185 RIILLESIAGVPGMVGGTLRHLRSMRLLKRDGGWIHSLLEEAENERMHLLTFMTIAQPSI 244

Query: 209 YERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---EN 265
           + R LVL  QGVF+NAFF+ YL+SP++AHR VG LEEEA+ +YT  + D+++G I   ++
Sbjct: 245 FTRALVLAAQGVFYNAFFLTYLISPRIAHRFVGALEEEAVRTYTHCISDMEAGLIPEWKD 304

Query: 266 VPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDI 308
           +PAPAIAIDYWRLP  ++L DVI  +RADEA HR VNH  +++
Sbjct: 305 MPAPAIAIDYWRLPATSSLLDVIRAVRADEATHRFVNHSLANL 347


>gi|62548351|gb|AAX86821.1| putative alternative oxidase [Actinidia deliciosa]
          Length = 107

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 102/107 (95%), Positives = 105/107 (98%)

Query: 161 GMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGV 220
           GMVGGMLLHL+SLRKF+HSGGWIKALLEEAENERMHLMTMVELVKPKWYER+LVLTVQGV
Sbjct: 1   GMVGGMLLHLRSLRKFEHSGGWIKALLEEAENERMHLMTMVELVKPKWYERILVLTVQGV 60

Query: 221 FFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVP 267
           FFNAFF LYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSG IENVP
Sbjct: 61  FFNAFFALYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGKIENVP 107


>gi|378548285|sp|D5JAJ1.1|AOX_TRAHO RecName: Full=Ubiquinol oxidase; AltName: Full=Alternative oxidase
 gi|293338884|gb|ADE43749.1| alternative oxidase [Trachipleistophora hominis]
 gi|440492337|gb|ELQ74912.1| putative Alternative oxidase domain (AOX) protein
           [Trachipleistophora hominis]
          Length = 318

 Score =  211 bits (538), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 103/193 (53%), Positives = 134/193 (69%)

Query: 115 KHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLR 174
           KH VP +F D  AY  VK LR   DL+FQ+ Y  R ++LETVAA+PGMVGGM  HL SLR
Sbjct: 115 KHFVPQSFSDTFAYLIVKGLRAFADLYFQKDYVRRVVVLETVAAIPGMVGGMFRHLYSLR 174

Query: 175 KFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPK 234
             + +G  IK L+ EAENER HL+T + ++KP   +RML+   Q +FFN + V Y ++P+
Sbjct: 175 NLEDNGEAIKKLVLEAENERQHLLTFLAVLKPNVLDRMLIKLGQFLFFNGYMVFYFVAPR 234

Query: 235 LAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRAD 294
            AHR VGYLEEEA+ SY  + ++I  G I+NV AP I+ DYW LP++A L DV+  +RAD
Sbjct: 235 TAHRFVGYLEEEAVRSYDAFEEEILLGHIKNVEAPRISKDYWNLPEEAMLIDVVRAVRAD 294

Query: 295 EAHHRDVNHFASD 307
           EA HRDVNH  +D
Sbjct: 295 EAEHRDVNHKMAD 307


>gi|38345481|emb|CAE01695.2| OSJNBa0010H02.19 [Oryza sativa Japonica Group]
          Length = 125

 Score =  211 bits (536), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 98/125 (78%), Positives = 110/125 (88%)

Query: 201 VELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDS 260
           +E+ KP+WYER LVL VQ VFFNA+F+ YLLSPKLAHRVVGYLEEEAIHSYTEYLKDI++
Sbjct: 1   MEVAKPRWYERTLVLAVQRVFFNAYFLGYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIEA 60

Query: 261 GSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPA 320
           G IENVPAP IAIDYWRLP  ATLKDV+ V+RADEAHHRDVNHFASD+ FQ  +L+D PA
Sbjct: 61  GKIENVPAPPIAIDYWRLPAGATLKDVVVVVRADEAHHRDVNHFASDVHFQRMDLKDTPA 120

Query: 321 PLGYH 325
           PL YH
Sbjct: 121 PLDYH 125


>gi|20467245|gb|AAM22475.1|AF502293_1 alternative oxidase [Cryptococcus neoformans var. grubii]
          Length = 401

 Score =  210 bits (535), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 106/224 (47%), Positives = 145/224 (64%), Gaps = 33/224 (14%)

Query: 118 VPTTFLDKVAYRTVKLLR-------------IPTDLFFQR-----------------RYG 147
            P TF DK A+RTVK LR             +P  +  Q+                 ++ 
Sbjct: 125 APVTFGDKAAHRTVKFLRKCFDLLTGYTPYEVPASVLAQKPIPIAELRSKGKLLSDQKWL 184

Query: 148 CRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPK 207
            R ++LE++A VPGMVGG L HL+S+R  +  GGWI +LLEEAENERMHL+T + + +P 
Sbjct: 185 FRIILLESIAGVPGMVGGTLRHLRSMRLLKRDGGWIHSLLEEAENERMHLLTFMTIAQPG 244

Query: 208 WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---E 264
            + R LVL  QGVF+NAFF+ YL+SP++AHR VG LEEEA+ +YT  + D+++G I   +
Sbjct: 245 IFTRALVLAAQGVFYNAFFLTYLISPRIAHRFVGALEEEAVRTYTHCISDMEAGLIPEWK 304

Query: 265 NVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDI 308
           ++PAPAIAIDYWRLP  ++L DVI  +RADEA HR VNH  +++
Sbjct: 305 DMPAPAIAIDYWRLPASSSLLDVIRAVRADEATHRFVNHSLANL 348


>gi|222612438|gb|EEE50570.1| hypothetical protein OsJ_30719 [Oryza sativa Japonica Group]
          Length = 131

 Score =  209 bits (533), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 98/131 (74%), Positives = 111/131 (84%)

Query: 195 MHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEY 254
           MHLMT +E+ K +WYER LVL  Q VFFNA+F+ YLLSPKLAHRV+GYLEEEAI SYTEY
Sbjct: 1   MHLMTFMEVAKLRWYERTLVLADQRVFFNAYFLSYLLSPKLAHRVIGYLEEEAIDSYTEY 60

Query: 255 LKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKE 314
           LKDI++G IENVP P IAIDYWRLP DATLKDV+ V+ ADEAHHRDVNHFASD+ FQG +
Sbjct: 61  LKDIEAGKIENVPTPPIAIDYWRLPADATLKDVVVVVCADEAHHRDVNHFASDVHFQGMD 120

Query: 315 LRDAPAPLGYH 325
           L+D PA L YH
Sbjct: 121 LKDTPALLDYH 131


>gi|294083747|ref|YP_003550504.1| alternative oxidase [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292663319|gb|ADE38420.1| Alternative oxidase [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 200

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/199 (52%), Positives = 129/199 (64%), Gaps = 1/199 (0%)

Query: 115 KHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLR 174
           +H  P+ F D+ A       R   D FF +RYG RA++LETVA VPGMV GM  HL SLR
Sbjct: 2   QHRAPSDFSDRFALAVTMFFRWFADTFFAKRYGHRAVVLETVAGVPGMVAGMWNHLSSLR 61

Query: 175 KF-QHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSP 233
           K  Q   GWIK LL+EAENERMHLM  +E+ KP   ER ++L  Q  F++ +F+LY+  P
Sbjct: 62  KMKQDEKGWIKTLLDEAENERMHLMIFIEIAKPNALERAIILLAQFFFWHFYFILYVFFP 121

Query: 234 KLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRA 293
           K AHR+VGY EE+A+ SYTEYL  IDS    N+ AP IA DY+ LPK A L+DVI  +R 
Sbjct: 122 KTAHRMVGYFEEQAVISYTEYLDQIDSDKATNIDAPDIAKDYYGLPKTAKLRDVIIAVRQ 181

Query: 294 DEAHHRDVNHFASDIQFQG 312
           DE  H D NH  +D   +G
Sbjct: 182 DEQGHSDTNHEMADALAKG 200


>gi|312885255|ref|ZP_07744933.1| alternative oxidase 1 [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367114|gb|EFP94688.1| alternative oxidase 1 [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 210

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 100/194 (51%), Positives = 134/194 (69%)

Query: 114 KKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSL 173
           +KH+ P +  +K+A    KLL+   +LF+  +Y  RAM+LET+AAVPGMV G+  HLK+L
Sbjct: 5   QKHYTPNSGSEKIALLVTKLLKKTLNLFYGGKYARRAMLLETIAAVPGMVAGVFNHLKAL 64

Query: 174 RKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSP 233
           R+ +  GGWIK LL+EA+NERMHLM  + + +P   ER LV+ +Q  F   +  +YLLS 
Sbjct: 65  RRMKDDGGWIKELLDEADNERMHLMIFLRITQPSIIERALVMLIQFFFVLIYSFVYLLSS 124

Query: 234 KLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRA 293
           K AHR+VGY EEEA +SY E+++ I  G++EN PAPAIAI Y+ L  DA L DV+  IR 
Sbjct: 125 KTAHRIVGYFEEEACNSYCEFIEKILDGTVENSPAPAIAIRYYSLQDDAKLLDVLECIRD 184

Query: 294 DEAHHRDVNHFASD 307
           DEA HRD NH  +D
Sbjct: 185 DEAKHRDKNHDIAD 198


>gi|116310409|emb|CAH67418.1| OSIGBa0143N19.12 [Oryza sativa Indica Group]
          Length = 125

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 95/125 (76%), Positives = 109/125 (87%)

Query: 201 VELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDS 260
           +E+ KP+WYER LVL +Q VFFN +F+ YLLSPKLAHRVVGYLEEEAIHSYTEYLKDI++
Sbjct: 1   MEVAKPRWYERTLVLAIQRVFFNTYFIGYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIEA 60

Query: 261 GSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPA 320
           G IENVPAP IAIDYWRLP  ATLKDV+ V+RA+EAHHRDVNHFASD+ FQ  +L+D PA
Sbjct: 61  GKIENVPAPPIAIDYWRLPTGATLKDVVVVVRANEAHHRDVNHFASDVHFQRMDLKDTPA 120

Query: 321 PLGYH 325
           PL YH
Sbjct: 121 PLDYH 125


>gi|66813644|ref|XP_641001.1| hypothetical protein DDB_G0280819 [Dictyostelium discoideum AX4]
 gi|18147009|dbj|BAB82989.1| alternative oxidase [Dictyostelium discoideum]
 gi|60469023|gb|EAL67021.1| hypothetical protein DDB_G0280819 [Dictyostelium discoideum AX4]
          Length = 337

 Score =  207 bits (528), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 101/184 (54%), Positives = 132/184 (71%), Gaps = 1/184 (0%)

Query: 124 DKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWI 183
           D  A  +V  LR  ++LFF+ ++   A++LETVAAVPG+V GM LHLK+LR  Q S  WI
Sbjct: 105 DNFAKFSVLFLRKFSNLFFKEKFLHYAIVLETVAAVPGLVAGMFLHLKTLRNMQ-SNNWI 163

Query: 184 KALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYL 243
           K L++E ENERMHL++ +EL KP   ER +V   Q +++N F V Y+LSPK AHR  GYL
Sbjct: 164 KILMDEMENERMHLLSFMELTKPTLLERGMVAVTQAIYWNLFLVFYVLSPKTAHRFTGYL 223

Query: 244 EEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNH 303
           EE+A+ +YT  L+DIDSG + N  AP IAI+YW LP+DATL+D+I VIR DE+ HR VNH
Sbjct: 224 EEQAVVTYTHMLEDIDSGKVPNYKAPQIAIEYWGLPEDATLRDLILVIRQDESDHRLVNH 283

Query: 304 FASD 307
             S+
Sbjct: 284 EISN 287


>gi|388516585|gb|AFK46354.1| unknown [Medicago truncatula]
          Length = 131

 Score =  207 bits (527), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 105/131 (80%), Positives = 118/131 (90%)

Query: 195 MHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEY 254
           MHLMTMVELVKP W+ER+LV+T QGVFFN FFV Y+LSPK+AHR VGYLEEEA+ SYT+Y
Sbjct: 1   MHLMTMVELVKPSWHERLLVITAQGVFFNGFFVFYILSPKIAHRFVGYLEEEAVISYTQY 60

Query: 255 LKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKE 314
           L  I+SG +ENVPAPAIAIDYWRLP DATLKDV+TVIRADEAHHR VNHFASDI  QGKE
Sbjct: 61  LNAIESGKVENVPAPAIAIDYWRLPNDATLKDVVTVIRADEAHHRGVNHFASDIHHQGKE 120

Query: 315 LRDAPAPLGYH 325
           L++APAP+GYH
Sbjct: 121 LKEAPAPVGYH 131


>gi|84386378|ref|ZP_00989406.1| alternative oxidase [Vibrio splendidus 12B01]
 gi|84378802|gb|EAP95657.1| alternative oxidase [Vibrio splendidus 12B01]
          Length = 210

 Score =  207 bits (527), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 100/202 (49%), Positives = 141/202 (69%), Gaps = 1/202 (0%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRK 175
           H+ P  F +KVA    +LL+   +LF+ +    RAM+LET+AAVPGMV G+  HLK+LR+
Sbjct: 7   HYKPEIFSEKVALLVTRLLKKTLNLFYGKHLAKRAMLLETIAAVPGMVAGVFNHLKALRR 66

Query: 176 FQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKL 235
            +  GGWIK LL+EA+NERMHLM  + +  P   ER+LV+ +Q +F   + V+YL+S K 
Sbjct: 67  MKDDGGWIKELLDEADNERMHLMIFLTVTNPSIIERILVMLLQFIFLLIYGVIYLVSSKT 126

Query: 236 AHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADE 295
           AHR+VGY EEEA +SY+EY+  I  G++ N PAP IAI Y+RLP++AT  DV+  IR DE
Sbjct: 127 AHRIVGYFEEEACNSYSEYISKIQDGTLPNHPAPEIAIKYYRLPENATFLDVLFCIREDE 186

Query: 296 AHHRDVNHFASDIQFQGKELRD 317
           A HRD NH  +++ ++ ++L D
Sbjct: 187 AKHRDKNHDIANL-YKTQDLPD 207


>gi|328875297|gb|EGG23662.1| hypothetical protein DFA_05796 [Dictyostelium fasciculatum]
          Length = 363

 Score =  207 bits (526), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 105/189 (55%), Positives = 133/189 (70%), Gaps = 1/189 (0%)

Query: 119 PTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQH 178
           P TF D  A   VK LR+ +++FF+ +Y   A +LETVAAVPGM GGML HL SLR  Q 
Sbjct: 148 PKTFGDHFARYAVKSLRLLSNMFFKEKYIHYACLLETVAAVPGMAGGMLQHLHSLRTCQ- 206

Query: 179 SGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHR 238
           +   IK LL+EAENERMHLMT +E+ KP + ER+L+   Q  +   + +LYL+SPK AHR
Sbjct: 207 NNYVIKTLLDEAENERMHLMTFIEITKPTFGERVLIALAQAAYLVDYTILYLVSPKTAHR 266

Query: 239 VVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHH 298
            VG+LEEEA+ +YT  L+D+D+G +ENV APAIA  YW LP+DA L+DVI VIR DE  H
Sbjct: 267 FVGFLEEEAVLTYTNMLRDLDAGLVENVNAPAIAKAYWGLPEDAKLRDVIMVIRQDEVEH 326

Query: 299 RDVNHFASD 307
             VNH  S+
Sbjct: 327 AHVNHDISN 335


>gi|148981866|ref|ZP_01816551.1| alternative oxidase [Vibrionales bacterium SWAT-3]
 gi|145960717|gb|EDK26058.1| alternative oxidase [Vibrionales bacterium SWAT-3]
          Length = 210

 Score =  207 bits (526), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 101/200 (50%), Positives = 141/200 (70%), Gaps = 1/200 (0%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRK 175
           H+ P  F +KVA    +LL+   +LF+ +    RAM+LET+AAVPGMV G+  HLK+LR+
Sbjct: 7   HYKPEIFSEKVALLVTRLLKKTLNLFYGKHLAKRAMLLETIAAVPGMVAGVFNHLKALRR 66

Query: 176 FQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKL 235
            +  GGWIK LL+EA+NERMHLM  + + KP   ER+LV+ +Q +F   + V+YL+S K 
Sbjct: 67  MKDDGGWIKELLDEADNERMHLMIFLTVTKPSIIERILVMLLQFIFLIIYGVIYLVSSKT 126

Query: 236 AHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADE 295
           AHR+VGY EEEA +SY+EY+  I+ G++ N PAP IAI Y+RLP+ AT  DV+  IR DE
Sbjct: 127 AHRIVGYFEEEACNSYSEYISKIEEGALPNHPAPEIAITYYRLPEGATFLDVLFRIREDE 186

Query: 296 AHHRDVNHFASDIQFQGKEL 315
           A HRD NH  +++ ++ K+L
Sbjct: 187 AKHRDKNHDIANL-YKTKDL 205


>gi|219664359|gb|ACL31211.1| alternative oxidase [Crassostrea gigas]
          Length = 332

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 103/205 (50%), Positives = 136/205 (66%), Gaps = 11/205 (5%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDLFF--------QRRYGCRAMMLETVAAVPGMVGGML 167
           H  P  F+DK+A+R+VKLLR   DL          ++++  R   LETVA VPGMV  M 
Sbjct: 117 HKPPEGFVDKLAFRSVKLLRSTFDLLTGFNWGERTEKKWVLRICFLETVAGVPGMVAAMT 176

Query: 168 LHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFV 227
            HL SLR+ +   GWI  LLEEAENERMHLMT ++L +P W  R  V+  QG F   F +
Sbjct: 177 RHLHSLRRLKRDHGWIHTLLEEAENERMHLMTALQLRQPSWLFRSGVIVSQGAFVTMFSI 236

Query: 228 LYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAIDYWRLPKDATL 284
            Y+LSP+  HR VGYLEEEA+ +Y++ LKDI+SGS+   +   AP +AI YW+LP+ A++
Sbjct: 237 AYMLSPRFCHRFVGYLEEEAVFTYSKCLKDIESGSLKHWQTKAAPDVAIRYWKLPETASM 296

Query: 285 KDVITVIRADEAHHRDVNHFASDIQ 309
           KDV+  IRADEAHHR VNH  + ++
Sbjct: 297 KDVVLAIRADEAHHRVVNHTLASMK 321


>gi|428185051|gb|EKX53904.1| hypothetical protein GUITHDRAFT_63810 [Guillardia theta CCMP2712]
          Length = 246

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 106/207 (51%), Positives = 137/207 (66%), Gaps = 13/207 (6%)

Query: 113 LKKHHVP-TTFLDKVAYRTVKLLRIPTDLFFQRRYG--------CRAMMLETVAAVPGMV 163
           ++K H P   F+D++A+  VKL R   D F   R+G         R   LETVAAVPGM 
Sbjct: 14  VRKTHRPMEDFVDRLAFSGVKLCRWSFDTFSGFRFGELTESKVISRICFLETVAAVPGMT 73

Query: 164 GGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFN 223
            GML HL+SLR+     GWI  LLEEAENERMHL+T V+L KP +  R  V+  QG+F N
Sbjct: 74  AGMLRHLRSLRRMDRDHGWIHTLLEEAENERMHLLTFVKLKKPSYAFRTAVVATQGIFMN 133

Query: 224 AFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAIDYWRLPK 280
            FFV Y+ SP+  HR VGYLEEEA+ +YT+ + +ID+G +   +  PAP IAIDYW L  
Sbjct: 134 LFFVAYIASPRFCHRFVGYLEEEAVKTYTDIIHEIDNGKLKHWQTQPAPQIAIDYWHLRP 193

Query: 281 DATLKDVITVIRADEAHHRDVNH-FAS 306
           DA+++D++  +R DEA+HRDVNH FAS
Sbjct: 194 DASMRDLMLAVRMDEANHRDVNHTFAS 220


>gi|405968665|gb|EKC33714.1| Alternative oxidase, mitochondrial [Crassostrea gigas]
          Length = 304

 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 104/205 (50%), Positives = 137/205 (66%), Gaps = 11/205 (5%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDLFF--------QRRYGCRAMMLETVAAVPGMVGGML 167
           H  P  F+DK+A+R+VKLLR   DL          ++++  R   LETVA VPGMV  M 
Sbjct: 89  HKPPEGFVDKLAFRSVKLLRSTFDLLTGFNWGERTEKKWVLRICFLETVAGVPGMVAAMT 148

Query: 168 LHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFV 227
            HL SLR+ +   GWI  LLEEAENERMHLMT ++L +P W  R  V+  QG F   F +
Sbjct: 149 RHLHSLRRLKRDHGWIHTLLEEAENERMHLMTALQLRQPSWLFRSGVIVSQGAFVTMFSI 208

Query: 228 LYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIEN---VPAPAIAIDYWRLPKDATL 284
            YLLSP+  HR VGYLEEEA+ +Y++ LKDI+SGS+++     AP +AI YW+LP+ A++
Sbjct: 209 AYLLSPRFCHRFVGYLEEEAVFTYSKCLKDIESGSLKHWQIKAAPDVAIRYWKLPETASM 268

Query: 285 KDVITVIRADEAHHRDVNHFASDIQ 309
           KDV+  IRADEAHHR VNH  + ++
Sbjct: 269 KDVVLAIRADEAHHRVVNHTLASMK 293


>gi|218195344|gb|EEC77771.1| hypothetical protein OsI_16922 [Oryza sativa Indica Group]
          Length = 128

 Score =  204 bits (519), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 95/128 (74%), Positives = 108/128 (84%)

Query: 198 MTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKD 257
           MT +E+ K +WYER LVL VQ VFFN +F+ YLLSPKLAHRVV YLEEEAIHSYTEYLKD
Sbjct: 1   MTFMEVAKQRWYERTLVLAVQRVFFNTYFLGYLLSPKLAHRVVAYLEEEAIHSYTEYLKD 60

Query: 258 IDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRD 317
           I++G IENVPAP IAIDYWRLP  ATLKDV+ V+RA+EAHHRDVNHFASD+ FQ  +L+D
Sbjct: 61  IEAGKIENVPAPPIAIDYWRLPTGATLKDVVVVVRANEAHHRDVNHFASDVHFQRMDLKD 120

Query: 318 APAPLGYH 325
             APL YH
Sbjct: 121 THAPLDYH 128


>gi|428184905|gb|EKX53759.1| hypothetical protein GUITHDRAFT_100729 [Guillardia theta CCMP2712]
          Length = 535

 Score =  203 bits (517), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 111/205 (54%), Positives = 129/205 (62%), Gaps = 12/205 (5%)

Query: 114 KKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYG--------CRAMMLETVAAVPGMVGG 165
           K H  P    D +AYR V+  R   D     + G         RA+ LETVA VPGMVGG
Sbjct: 137 KTHVDPKDTADSIAYRAVQTARWMFDTLSGYKIGQLTESKVINRAIFLETVAGVPGMVGG 196

Query: 166 MLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAF 225
           ML HL+SLR      GWI  LLEEAENERMHL+T V + KP    R  VL  QGVF N F
Sbjct: 197 MLRHLRSLRTMTRDHGWIHTLLEEAENERMHLLTFVTIKKPGPIFRWAVLGTQGVFMNLF 256

Query: 226 FVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSG---SIENVPAPAIAIDYWRLPKDA 282
           FV YL+ PK+ HR VGYLEEEA+ +YT+ L  ID G   S  N  AP IAIDYW +  DA
Sbjct: 257 FVTYLIYPKICHRFVGYLEEEAVKTYTDILNAIDDGRLSSFRNARAPQIAIDYWHMKPDA 316

Query: 283 TLKDVITVIRADEAHHRDVNH-FAS 306
           T++D+  V+RADEA+HRDVNH FAS
Sbjct: 317 TMRDLFLVVRADEANHRDVNHMFAS 341


>gi|428185053|gb|EKX53906.1| hypothetical protein GUITHDRAFT_63923 [Guillardia theta CCMP2712]
          Length = 247

 Score =  203 bits (516), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 106/207 (51%), Positives = 136/207 (65%), Gaps = 13/207 (6%)

Query: 113 LKKHHVPTTFL-DKVAYRTVKLLRIPTDLFFQRRYG--------CRAMMLETVAAVPGMV 163
           ++K H P   L D++A+  VKL R   D F   R+G         R   LETVAAVPGM 
Sbjct: 14  VRKTHKPIEGLADRLAFSGVKLCRWSFDTFSGFRFGELTESKVISRICFLETVAAVPGMT 73

Query: 164 GGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFN 223
            GML HL+SLR+     GWI  LLEEAENERMHL+T V+L KP +  R  V+  QG+F N
Sbjct: 74  AGMLRHLRSLRRMDRDHGWIHTLLEEAENERMHLLTFVKLKKPSYAFRTAVVATQGIFMN 133

Query: 224 AFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAIDYWRLPK 280
            FFV Y+ SP+  HR VGYLEEEA+ +YT+ + +ID+G +   +  PAP IAIDYW L  
Sbjct: 134 LFFVAYIASPRFCHRFVGYLEEEAVKTYTDIIHEIDNGKLKHWQTQPAPQIAIDYWHLRP 193

Query: 281 DATLKDVITVIRADEAHHRDVNH-FAS 306
           DA+++D++  +R DEA+HRDVNH FAS
Sbjct: 194 DASMRDLMLAVRMDEANHRDVNHTFAS 220


>gi|428185052|gb|EKX53905.1| hypothetical protein GUITHDRAFT_100154 [Guillardia theta CCMP2712]
          Length = 285

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 106/207 (51%), Positives = 136/207 (65%), Gaps = 13/207 (6%)

Query: 113 LKKHHVPTTFL-DKVAYRTVKLLRIPTDLFFQRRYG--------CRAMMLETVAAVPGMV 163
           ++K H P   L D++A+  VKL R   D F   R+G         R   LETVAAVPGM 
Sbjct: 52  VRKTHKPIEGLADRLAFSGVKLCRWSFDTFSGFRFGELTESKVISRICFLETVAAVPGMT 111

Query: 164 GGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFN 223
            GML HL+SLR+     GWI  LLEEAENERMHL+T V+L KP +  R  V+  QG+F N
Sbjct: 112 AGMLRHLRSLRRMDRDHGWIHTLLEEAENERMHLLTFVKLKKPSYAFRTAVVATQGIFMN 171

Query: 224 AFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAIDYWRLPK 280
            FFV Y+ SP+  HR VGYLEEEA+ +YT+ + +ID+G +   +  PAP IAIDYW L  
Sbjct: 172 LFFVAYIASPRFCHRFVGYLEEEAVKTYTDIIHEIDNGKLKHWQTQPAPQIAIDYWHLRP 231

Query: 281 DATLKDVITVIRADEAHHRDVNH-FAS 306
           DA+++D++  +R DEA+HRDVNH FAS
Sbjct: 232 DASMRDLMLAVRMDEANHRDVNHTFAS 258


>gi|417951248|ref|ZP_12594355.1| hypothetical protein VISP3789_20108 [Vibrio splendidus ATCC 33789]
 gi|342805200|gb|EGU40478.1| hypothetical protein VISP3789_20108 [Vibrio splendidus ATCC 33789]
          Length = 210

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 99/200 (49%), Positives = 139/200 (69%), Gaps = 1/200 (0%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRK 175
           H+ P    +KVA    +LL+   +LF+ +    RAM+LET+AAVPGMV G+  HLK+LR+
Sbjct: 7   HYQPEVLSEKVALVVTRLLKKTLNLFYGKHLAKRAMLLETIAAVPGMVAGVFNHLKALRR 66

Query: 176 FQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKL 235
            +  GGWIK LL+EA+NERMHLM  + + KP   ER+LV+ +Q +F   + V+YL S K 
Sbjct: 67  MKDDGGWIKELLDEADNERMHLMIFLTVTKPSIIERILVMLLQFLFLIIYSVIYLASSKT 126

Query: 236 AHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADE 295
           AHR+VG+ EEEA +SY+EY+  I+ G++ N PAP IAI Y+RLP+ AT  DV+  IR DE
Sbjct: 127 AHRIVGFFEEEACNSYSEYISKIEEGALPNHPAPEIAITYYRLPEGATFLDVLFRIREDE 186

Query: 296 AHHRDVNHFASDIQFQGKEL 315
           A HRD NH  +++ ++ K+L
Sbjct: 187 AKHRDKNHDIANL-YKTKDL 205


>gi|301106725|ref|XP_002902445.1| alternative oxidase, mitochondrial precursor [Phytophthora
           infestans T30-4]
 gi|262098319|gb|EEY56371.1| alternative oxidase, mitochondrial precursor [Phytophthora
           infestans T30-4]
          Length = 316

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 107/211 (50%), Positives = 141/211 (66%), Gaps = 14/211 (6%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDL----------FFQRRYGCRAMMLETVAAVPGMVGG 165
           HH  T   ++VA+  VK+LR   D+            ++ +  R + LE+VA VPGMVGG
Sbjct: 79  HHPITKMHERVAHLAVKVLRTGFDVVSGYRGPGGGMTEKDWLNRCLFLESVAGVPGMVGG 138

Query: 166 MLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAF 225
           ML HL+SLRKF+   GWI  LLEEAENERMHL+  + + +P ++ R LVL  QGVFFNAF
Sbjct: 139 MLRHLRSLRKFKRDYGWIHTLLEEAENERMHLLIFMNIKQPGYFFRTLVLGAQGVFFNAF 198

Query: 226 FVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIE---NVPAPAIAIDYWRLPKDA 282
           F+ YL+SPK  HR VGYLEEEA+ +YT  LKDI+ G ++      AP IA  Y++LP+DA
Sbjct: 199 FLTYLVSPKTCHRFVGYLEEEAVKTYTCLLKDIEDGHLDAWKEKKAPLIAQTYYKLPEDA 258

Query: 283 TLKDVITVIRADEAHHRDVNH-FASDIQFQG 312
           +L D++  +RADE +HRDVNH FA+  Q  G
Sbjct: 259 SLYDMVKCVRADECNHRDVNHEFANLDQKTG 289


>gi|328875293|gb|EGG23658.1| alternative oxidase [Dictyostelium fasciculatum]
          Length = 392

 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 104/189 (55%), Positives = 131/189 (69%), Gaps = 1/189 (0%)

Query: 119 PTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQH 178
           P TF D  A   VK LR+ +++FF+ +Y   A +LETVAAVPGM GGML HL SLR  ++
Sbjct: 176 PKTFGDHFARYAVKSLRLLSNMFFKEKYIHYACLLETVAAVPGMAGGMLQHLHSLRTCKN 235

Query: 179 SGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHR 238
               IK LL+EAENERMHLMT +E+ KP   ER L+   Q  +   + +LYL+SPK AHR
Sbjct: 236 IY-VIKTLLDEAENERMHLMTFIEITKPTVGERALIALAQAAYLVDYMILYLVSPKTAHR 294

Query: 239 VVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHH 298
            VG+LEEEA+ +YT  L+D+D+G +ENV APAIA  YW LP+DA L+DVI VIR DE  H
Sbjct: 295 FVGFLEEEAVLTYTNMLRDLDAGLVENVNAPAIAKAYWGLPEDAKLRDVIMVIRQDEVEH 354

Query: 299 RDVNHFASD 307
             VNH  S+
Sbjct: 355 AHVNHDISN 363


>gi|294867900|ref|XP_002765284.1| alternative oxidase, putative [Perkinsus marinus ATCC 50983]
 gi|239865297|gb|EEQ98001.1| alternative oxidase, putative [Perkinsus marinus ATCC 50983]
          Length = 328

 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 109/222 (49%), Positives = 139/222 (62%), Gaps = 12/222 (5%)

Query: 114 KKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGC--------RAMMLETVAAVPGMVGG 165
           + H+ P  F D+ AY +V+ LR   D+    ++G         R + LETVAAVPGMVGG
Sbjct: 108 QTHYPPKGFSDRAAYYSVQALRQSFDILSGYKFGQHHAEMWVRRVVFLETVAAVPGMVGG 167

Query: 166 MLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAF 225
           M+ HL SLR  +   GWI  LLEEAENERMHLM  + L +P    R LVL  QG+FF  +
Sbjct: 168 MVRHLNSLRNMERDHGWIHTLLEEAENERMHLMIALTLKEPGPLLRGLVLVSQGIFFWTY 227

Query: 226 FVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENV---PAPAIAIDYWRLPKDA 282
            +LYLL+PK  HR VGYLEEEA+ +YT  LK ID G +      PAP IA DY+ L ++A
Sbjct: 228 GLLYLLAPKFNHRFVGYLEEEAVKTYTNLLKCIDEGKVSEFASEPAPFIARDYYELGENA 287

Query: 283 TLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGY 324
           TL+DV   IRADE+HHRDVNH  +     G + ++ P P G+
Sbjct: 288 TLRDVFACIRADESHHRDVNHTFASADENGCKYKN-PFPPGH 328


>gi|27650410|emb|CAD33257.1| alternative oxidase [Crocus sativus]
          Length = 156

 Score =  200 bits (509), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 98/140 (70%), Positives = 111/140 (79%), Gaps = 1/140 (0%)

Query: 187 LEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAH-RVVGYLEE 245
           LEEAENERMHLMT +E+ +P+WYER LV+TVQG             PK+    VVGYLEE
Sbjct: 17  LEEAENERMHLMTFMEVSQPRWYERALVMTVQGSLLQCLLPRKPHLPKVCFIGVVGYLEE 76

Query: 246 EAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFA 305
           EAIHSYTE+LK++D GSIENVPAPAIAIDYWRL K ATL+DV+ V+RADEAHHRDVNHFA
Sbjct: 77  EAIHSYTEFLKELDKGSIENVPAPAIAIDYWRLSKSATLRDVVMVVRADEAHHRDVNHFA 136

Query: 306 SDIQFQGKELRDAPAPLGYH 325
           SDI  QG ELR  PAP+GYH
Sbjct: 137 SDIHCQGHELRVHPAPVGYH 156


>gi|398396918|ref|XP_003851917.1| hypothetical protein MYCGRDRAFT_72918 [Zymoseptoria tritici IPO323]
 gi|339471797|gb|EGP86893.1| hypothetical protein MYCGRDRAFT_72918 [Zymoseptoria tritici IPO323]
          Length = 342

 Score =  200 bits (508), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 99/207 (47%), Positives = 140/207 (67%), Gaps = 14/207 (6%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDL----------FFQRRYGCRAMMLETVAAVPGMVGG 165
           H  P  F D+VA   V++LR   DL             R+Y  R + LE+VA VPGMV G
Sbjct: 97  HRNPKDFSDRVALTFVRVLRWGLDLATGYRKGAGNMTARQYMIRNVFLESVAGVPGMVAG 156

Query: 166 MLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAF 225
           ML HL S+R+ +   GWI+ LLEE+ NERMHL+T +++ +P W+ R++VL  QGVFFNAF
Sbjct: 157 MLRHLHSMRRMKRDNGWIETLLEESFNERMHLLTFLKMAEPGWFMRVMVLGAQGVFFNAF 216

Query: 226 FVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAIDYWRLPKDA 282
           F+ YLLSP+  HR VG+LEEEA+ +YT  + DID+G +   +N+PAP IA+ YW +P+ +
Sbjct: 217 FISYLLSPRTCHRFVGHLEEEAVLTYTREIADIDAGLLPEWDNLPAPDIAVKYWSMPEGS 276

Query: 283 -TLKDVITVIRADEAHHRDVNHFASDI 308
            T++D++  IRADE+ HR+VNH   ++
Sbjct: 277 RTMRDLLLYIRADESKHREVNHTLGNL 303


>gi|320169629|gb|EFW46528.1| alternative oxidase isoform B [Capsaspora owczarzaki ATCC 30864]
          Length = 379

 Score =  200 bits (508), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 102/209 (48%), Positives = 137/209 (65%), Gaps = 11/209 (5%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYG--------CRAMMLETVAAVPGMVGGML 167
           HH P   +D  A+  +K +R+  D+     +G         R + LETVAAVPGMVG M+
Sbjct: 162 HHKPDNLVDWTAFAAIKCIRLGFDVLSGFAFGERTPDKWLTRIIFLETVAAVPGMVGAMI 221

Query: 168 LHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFV 227
            HL+SLR  +   GWI  LLEEAENERMHL+T ++L +P    R+ VL VQGV  N FF 
Sbjct: 222 RHLQSLRLMRRDHGWIHTLLEEAENERMHLLTALQLKQPSQLFRLAVLAVQGVMTNTFFF 281

Query: 228 LYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAIDYWRLPKDATL 284
           LY+L+P+  HR VGYLEEEA+++YT+ L DI +G +   +   AP IAI+YW+L K AT+
Sbjct: 282 LYILAPRFVHRFVGYLEEEAVYTYTKCLDDIKTGKLPEWKTGKAPEIAINYWKLDKAATM 341

Query: 285 KDVITVIRADEAHHRDVNHFASDIQFQGK 313
           +DVI  IR+DEAHHR VNH  +++   G+
Sbjct: 342 EDVIYAIRSDEAHHRLVNHTFANLHQLGQ 370


>gi|225563182|gb|EEH11461.1| alternative oxidase [Ajellomyces capsulatus G186AR]
          Length = 357

 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 102/219 (46%), Positives = 141/219 (64%), Gaps = 25/219 (11%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDL---------------------FFQRRYGCRAMMLE 154
           H     + D VA  TV+ LR  TDL                       +R++  R + LE
Sbjct: 101 HREAKNWSDWVALGTVRFLRWATDLATGYRHAAPGKQGVEVPEQFQMTERKWVIRFIFLE 160

Query: 155 TVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLV 214
           TVA VPGMVGGML HL+SLR+ +   GWI+ LLEEA NERMHL++ ++L +P W+ R++V
Sbjct: 161 TVAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLSFLKLAQPGWFMRLMV 220

Query: 215 LTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAI 271
           L  QGVFFN FF+ YL+SP+  HR VGYLEEEA+ +YT  +KD++SG +    N PAP I
Sbjct: 221 LGAQGVFFNGFFISYLISPRTCHRFVGYLEEEAVMTYTHAIKDLESGKLPNWANQPAPDI 280

Query: 272 AIDYWRLPKDA-TLKDVITVIRADEAHHRDVNHFASDIQ 309
           A+ YW++P+   T+ D++  IRADEA HR+VNH  ++++
Sbjct: 281 AVAYWQMPEGKRTILDLLYYIRADEAKHREVNHTLANLK 319


>gi|51701295|sp|Q9Y711.1|AOX_AJECA RecName: Full=Alternative oxidase, mitochondrial; Flags: Precursor
 gi|4768918|gb|AAD29680.1|AF133236_1 alternative oxidase [Ajellomyces capsulatus]
 gi|4768920|gb|AAD29681.1|AF133237_1 alternative oxidase [Ajellomyces capsulatus]
 gi|23452825|gb|AAN33183.1| alternative oxidase [Ajellomyces capsulatus]
          Length = 356

 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 102/219 (46%), Positives = 141/219 (64%), Gaps = 25/219 (11%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDL---------------------FFQRRYGCRAMMLE 154
           H     + D VA  TV+ LR  TDL                       +R++  R + LE
Sbjct: 100 HREAKNWSDWVALGTVRFLRWATDLATGYRHAAPGKQGVEVPEQFQMTERKWVIRFIFLE 159

Query: 155 TVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLV 214
           TVA VPGMVGGML HL+SLR+ +   GWI+ LLEEA NERMHL++ ++L +P W+ R++V
Sbjct: 160 TVAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLSFLKLAQPGWFMRLMV 219

Query: 215 LTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAI 271
           L  QGVFFN FF+ YL+SP+  HR VGYLEEEA+ +YT  +KD++SG +    N PAP I
Sbjct: 220 LGAQGVFFNGFFISYLISPRTCHRFVGYLEEEAVMTYTHAIKDLESGKLPNWANQPAPDI 279

Query: 272 AIDYWRLPKDA-TLKDVITVIRADEAHHRDVNHFASDIQ 309
           A+ YW++P+   T+ D++  IRADEA HR+VNH  ++++
Sbjct: 280 AVAYWQMPEGKRTILDLLYYIRADEAKHREVNHTLANLK 318


>gi|302509494|ref|XP_003016707.1| hypothetical protein ARB_04999 [Arthroderma benhamiae CBS 112371]
 gi|291180277|gb|EFE36062.1| hypothetical protein ARB_04999 [Arthroderma benhamiae CBS 112371]
          Length = 357

 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 106/217 (48%), Positives = 142/217 (65%), Gaps = 23/217 (10%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDL----------------FFQ---RRYGCRAMMLETV 156
           H    ++ D VA  TV+LLR  TDL                 FQ   R++  R + LETV
Sbjct: 103 HRETKSWSDWVALGTVRLLRWGTDLATGYRHPKAGEPAPPKHFQMNERKWLIRFVFLETV 162

Query: 157 AAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLT 216
           A VPGMVGGML HL SLRK +   GWI+ LLEEA NERMHL+T ++L +P W+ R++VL 
Sbjct: 163 AGVPGMVGGMLRHLHSLRKMKRDNGWIETLLEEAYNERMHLLTFLKLAEPGWFMRLMVLG 222

Query: 217 VQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAI 273
            QGVFFN FF+ YL+SP+  HR VGYLEEEA+ +YT  +KD+++G +    ++PAP IAI
Sbjct: 223 AQGVFFNGFFLSYLISPRTCHRFVGYLEEEAVLTYTHAIKDLEAGKLPAWTDLPAPDIAI 282

Query: 274 DYWRLPK-DATLKDVITVIRADEAHHRDVNHFASDIQ 309
            YW +PK +  + D++  IRADEA HR+VNH  +++ 
Sbjct: 283 KYWNMPKGNQKMVDLLYYIRADEAKHREVNHTLANLN 319


>gi|325093130|gb|EGC46440.1| alternative oxidase [Ajellomyces capsulatus H88]
          Length = 357

 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 102/219 (46%), Positives = 141/219 (64%), Gaps = 25/219 (11%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDL---------------------FFQRRYGCRAMMLE 154
           H     + D VA  TV+ LR  TDL                       +R++  R + LE
Sbjct: 101 HREAKNWSDWVALGTVRFLRWATDLATGYRHAAPGKQGVEVPEQFQMTERKWVIRFIFLE 160

Query: 155 TVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLV 214
           TVA VPGMVGGML HL+SLR+ +   GWI+ LLEEA NERMHL++ ++L +P W+ R++V
Sbjct: 161 TVAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLSFLKLAQPGWFMRLMV 220

Query: 215 LTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAI 271
           L  QGVFFN FF+ YL+SP+  HR VGYLEEEA+ +YT  +KD++SG +    N PAP I
Sbjct: 221 LGAQGVFFNGFFISYLISPRTCHRFVGYLEEEAVMTYTHAIKDLESGKLPNWANQPAPDI 280

Query: 272 AIDYWRLPKDA-TLKDVITVIRADEAHHRDVNHFASDIQ 309
           A+ YW++P+   T+ D++  IRADEA HR+VNH  ++++
Sbjct: 281 AVAYWQMPEGKRTILDLLYYIRADEAKHREVNHTLANLK 319


>gi|261195168|ref|XP_002623988.1| alternative oxidase [Ajellomyces dermatitidis SLH14081]
 gi|239587860|gb|EEQ70503.1| alternative oxidase [Ajellomyces dermatitidis SLH14081]
 gi|239610651|gb|EEQ87638.1| alternative oxidase [Ajellomyces dermatitidis ER-3]
 gi|327348915|gb|EGE77772.1| alternative oxidase [Ajellomyces dermatitidis ATCC 18188]
          Length = 358

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 101/219 (46%), Positives = 143/219 (65%), Gaps = 25/219 (11%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDL---------------------FFQRRYGCRAMMLE 154
           H     + D VA  TV+ LR  TDL                       +R++  R + LE
Sbjct: 102 HREAKNWSDWVALGTVRALRRATDLATGYRHPLAGKQEKEIPEKFQMTERKWIVRFIFLE 161

Query: 155 TVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLV 214
           TVA VPGMVGGML HL+SLR+ +   GWI+ LLEEA NERMHL++ ++L +P W+ R++V
Sbjct: 162 TVAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLSFLKLAEPGWFMRLMV 221

Query: 215 LTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAI 271
           L  QGVFFN+FF+ YL+SP+  HR VGYLEEEA+ +YT  +KD+++G +    N PAP I
Sbjct: 222 LGAQGVFFNSFFISYLISPRTCHRFVGYLEEEAVMTYTHAIKDLEAGKLPNWANQPAPDI 281

Query: 272 AIDYWRLPKDA-TLKDVITVIRADEAHHRDVNHFASDIQ 309
           A++YW++P+   T+ D++  IRADEA HR+VNH  ++++
Sbjct: 282 AVEYWKMPEGKRTILDLLYYIRADEAKHREVNHTLANLK 320


>gi|327303204|ref|XP_003236294.1| alternative oxidase [Trichophyton rubrum CBS 118892]
 gi|326461636|gb|EGD87089.1| alternative oxidase [Trichophyton rubrum CBS 118892]
          Length = 357

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 106/217 (48%), Positives = 141/217 (64%), Gaps = 23/217 (10%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDL----------------FFQ---RRYGCRAMMLETV 156
           H     + D VA  TV+LLR  TDL                 FQ   R++  R + LETV
Sbjct: 103 HRETKNWSDWVALGTVRLLRWGTDLATGYRHPKPGEPAPSKHFQMNERKWLIRFVFLETV 162

Query: 157 AAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLT 216
           A VPGMVGGML HL SLRK +   GWI+ LLEEA NERMHL+T ++L +P W+ R++VL 
Sbjct: 163 AGVPGMVGGMLRHLHSLRKMKRDNGWIETLLEEAYNERMHLLTFLKLAEPGWFMRLMVLG 222

Query: 217 VQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAI 273
            QGVFFN FF+ YL+SP+  HR VGYLEEEA+ +YT  +KD+++G +    ++PAP IAI
Sbjct: 223 AQGVFFNGFFLSYLISPRTCHRFVGYLEEEAVLTYTHAIKDLEAGKLPAWTDLPAPDIAI 282

Query: 274 DYWRLPK-DATLKDVITVIRADEAHHRDVNHFASDIQ 309
            YW +PK +  + D++  IRADEA HR+VNH  +++ 
Sbjct: 283 KYWNMPKGNQKMVDLLYYIRADEAKHREVNHTLANLN 319


>gi|32959910|emb|CAE11918.1| alternative oxidase [Pythium aphanidermatum]
          Length = 316

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 111/232 (47%), Positives = 144/232 (62%), Gaps = 15/232 (6%)

Query: 96  WNCFMPWETYRADLSIDL-KKHHVPTTFLDKVAYRTVKLLRIPTDL----------FFQR 144
           W   +P   Y      D+ + HH P    ++ AY  VKL+R   D+            ++
Sbjct: 76  WENPVPHAVYDLQKIEDIPQTHHDPKKIHERAAYVAVKLVRKGFDIASGYRGPGGAMTEK 135

Query: 145 RYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELV 204
            +  R + LETVA VPGMVGGM  HL+SLR  +   GWI  LLEEAENERMHL+  + + 
Sbjct: 136 DWLHRCLFLETVAGVPGMVGGMARHLRSLRSMRRDYGWIHTLLEEAENERMHLLIFMNMK 195

Query: 205 KPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI- 263
           +P    R+LVL  QGVFFN FFV YL+SP+  HR VGYLEEEA+ +YT  LKDI+ G + 
Sbjct: 196 QPGPLFRLLVLGAQGVFFNMFFVSYLVSPRTCHRFVGYLEEEAVKTYTGLLKDIEDGHLK 255

Query: 264 --ENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNH-FASDIQFQG 312
             E + APAIA  Y++LP +A++ D+I  IRADEA+HRDVNH FA   Q +G
Sbjct: 256 EWEKMTAPAIARSYYKLPDEASVYDMIKCIRADEANHRDVNHTFAGLDQVKG 307


>gi|390364451|ref|XP_785497.3| PREDICTED: alternative oxidase, mitochondrial-like
           [Strongylocentrotus purpuratus]
          Length = 289

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 102/205 (49%), Positives = 135/205 (65%), Gaps = 11/205 (5%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDLF--------FQRRYGCRAMMLETVAAVPGMVGGML 167
           H+ P   +DK AY   K LR   D F         +R++  R + LETVA VPGMV  M 
Sbjct: 74  HNPPKERVDKAAYFACKALRANFDFFSGFSWGKRTERKWIYRIIFLETVAGVPGMVAAMS 133

Query: 168 LHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFV 227
            HL+SLR+ Q   GWI  LLEEAENERMHLMT +E+ +P  + R++VL  QG+F N FF+
Sbjct: 134 RHLRSLRRMQRDHGWIHTLLEEAENERMHLMTALEIKQPSLFFRLMVLGAQGIFVNMFFI 193

Query: 228 LYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAIDYWRLPKDATL 284
            YL+SP+  HR VGYLEEEA+ +YT+ LKD+ + ++   ++  AP I+I+YW+L  DA  
Sbjct: 194 SYLVSPRFCHRFVGYLEEEAVITYTKLLKDLRADALPKWKDRIAPEISINYWKLRPDADY 253

Query: 285 KDVITVIRADEAHHRDVNHFASDIQ 309
            D+   IRADEAHHR+VNH  SDI+
Sbjct: 254 IDLFRAIRADEAHHREVNHTLSDIK 278


>gi|325610915|gb|ADZ36698.1| alternative oxidase [Urechis unicinctus]
          Length = 348

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 103/205 (50%), Positives = 133/205 (64%), Gaps = 11/205 (5%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDLFF--------QRRYGCRAMMLETVAAVPGMVGGML 167
           H  P   +DK+AY  VK  R   D           ++ +  R   LETVA VPGMV  M+
Sbjct: 133 HRNPEGIVDKIAYMGVKFTRGCYDFVSGYSRGRQDEKMWVSRLCFLETVAGVPGMVAAMV 192

Query: 168 LHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFV 227
            HL SLRK +   GWI  LLEEAENERMHLM M++L +P  + R+ V+  QGVF + F V
Sbjct: 193 RHLTSLRKMRRDHGWIHTLLEEAENERMHLMVMLQLKQPSLFFRLGVMVTQGVFVSGFSV 252

Query: 228 LYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIEN---VPAPAIAIDYWRLPKDATL 284
            Y+LSP+L HR VGYLEEEA+ +YT+ LK+IDSG++++   +P P +AI YW+L   A +
Sbjct: 253 AYMLSPRLCHRFVGYLEEEAVITYTKLLKEIDSGAMQHWNTLPGPDVAISYWKLRPGAAM 312

Query: 285 KDVITVIRADEAHHRDVNHFASDIQ 309
           KDVI  IRADEAHHR VNH  S ++
Sbjct: 313 KDVILAIRADEAHHRVVNHTLSSLK 337


>gi|326471371|gb|EGD95380.1| alternative oxidase [Trichophyton tonsurans CBS 112818]
 gi|326479484|gb|EGE03494.1| alternative oxidase [Trichophyton equinum CBS 127.97]
          Length = 357

 Score =  198 bits (503), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 105/217 (48%), Positives = 141/217 (64%), Gaps = 23/217 (10%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDL----------------FFQ---RRYGCRAMMLETV 156
           H     + D VA  TV+LLR  TDL                 FQ   R++  R + LETV
Sbjct: 103 HRETKNWSDWVALGTVRLLRWGTDLATGYRHPKAGEPAPSKHFQMNERKWLIRFVFLETV 162

Query: 157 AAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLT 216
           A VPGMVGGML HL SLRK +   GWI+ LLEEA NERMHL++ ++L +P W+ R++VL 
Sbjct: 163 AGVPGMVGGMLRHLHSLRKMKRDNGWIETLLEEAYNERMHLLSFLKLAEPGWFMRLMVLG 222

Query: 217 VQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAI 273
            QGVFFN FF+ YL+SP+  HR VGYLEEEA+ +YT  +KD+++G +    ++PAP IAI
Sbjct: 223 AQGVFFNGFFLSYLISPRTCHRFVGYLEEEAVLTYTHAIKDLEAGKLPAWTDLPAPDIAI 282

Query: 274 DYWRLPK-DATLKDVITVIRADEAHHRDVNHFASDIQ 309
            YW +PK +  + D++  IRADEA HR+VNH  +++ 
Sbjct: 283 KYWNMPKGNQKIVDLLYYIRADEAKHREVNHTLANLN 319


>gi|301106717|ref|XP_002902441.1| alternative oxidase, mitochondrial precursor [Phytophthora
           infestans T30-4]
 gi|262098315|gb|EEY56367.1| alternative oxidase, mitochondrial precursor [Phytophthora
           infestans T30-4]
          Length = 325

 Score =  197 bits (502), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 100/213 (46%), Positives = 138/213 (64%), Gaps = 13/213 (6%)

Query: 109 LSIDLKKHHVPTTFLDKVAYRTVKLLRI----------PTDLFFQRRYGCRAMMLETVAA 158
           +++  + HH   T  ++VAY  +K LR+          P     +R +  R + LE++A 
Sbjct: 99  ITVMEETHHPVATMSERVAYLAIKTLRVGFDKVTRYRGPGGEMTERDWLHRCLFLESIAG 158

Query: 159 VPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQ 218
           VPGMVGGML HL+SLR+ +   GWI  LLEEAENERMHL+  + L +P W+ R LV+  Q
Sbjct: 159 VPGMVGGMLRHLRSLRRMKRDYGWIHTLLEEAENERMHLLIFLHLKQPGWFFRTLVIGAQ 218

Query: 219 GVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIE---NVPAPAIAIDY 275
           GVFFN FF+ YL+SPK  HR VGYLEEEA+ +YT  L+DI+ G ++      AP IA  Y
Sbjct: 219 GVFFNGFFLTYLVSPKTCHRFVGYLEEEAVKTYTYLLQDIEDGHLDGWKQKQAPLIAQTY 278

Query: 276 WRLPKDATLKDVITVIRADEAHHRDVNHFASDI 308
           ++LP+ + + D+I  IRADE +HRDVNH  +D+
Sbjct: 279 YKLPEGSNIYDMIKCIRADECNHRDVNHKFADL 311


>gi|77820269|gb|ABB04275.1| alternative oxidase isoform B [Acanthamoeba castellanii]
 gi|77820271|gb|ABB04276.1| alternative oxidase isoform B [Acanthamoeba castellanii]
 gi|440802244|gb|ELR23175.1| alternative oxidase isoform A, putative [Acanthamoeba castellanii
           str. Neff]
          Length = 374

 Score =  197 bits (502), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 102/221 (46%), Positives = 136/221 (61%), Gaps = 15/221 (6%)

Query: 115 KHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGC--------RAMMLETVAAVPGMVGGM 166
            H  P    DK+A  TV+L+R   D      +G         R + LETVA VPG V  +
Sbjct: 158 NHTPPENLTDKLALNTVRLMRFNFDWMSGYSWGKLTEADWLRRIIFLETVAGVPGSVAAI 217

Query: 167 LLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFF 226
           L HL SLR+ +   GWI  LLEEAENERMHL+T ++L +P    R  V   QG+FFN FF
Sbjct: 218 LRHLHSLRRLKRDHGWIHTLLEEAENERMHLLTGLKLKQPGKIFRTAVWVTQGIFFNFFF 277

Query: 227 VLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAIDYWRLPKDAT 283
             YL+SP+  HR VGYLEEEA+ +YT  L D+D+G +   ++ PAP IA  YW++  DA 
Sbjct: 278 AAYLVSPRFCHRFVGYLEEEAVRTYTHLLHDLDAGKLPEWKDTPAPEIARQYWKMGDDAK 337

Query: 284 LKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGY 324
            +DV+ +IRADEAHHR+VNH  +++Q +    +D P P G+
Sbjct: 338 WRDVVALIRADEAHHREVNHTFANLQLE----QDNPFPPGH 374


>gi|298714367|emb|CBJ27424.1| alternative oxidase isoform A [Ectocarpus siliculosus]
          Length = 422

 Score =  197 bits (502), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 107/238 (44%), Positives = 146/238 (61%), Gaps = 14/238 (5%)

Query: 100 MPWETYRADLSIDLK-KHHVPTTFLDKVAYRTVKLLR--------IPTDLFFQRRYGCRA 150
           MP E + A+    +K  H  P   +D +A R V+ LR          T +  + +Y  R 
Sbjct: 127 MPHEIWSAEEVNSIKPTHKDPEEAVDHIALRGVRALRWFFDVLAGFKTGVIDEHKYLNRV 186

Query: 151 MMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYE 210
           + LETVA +PGMV G L HL SLR+ +   GWI  LLEEAENERMHL+T ++L +P    
Sbjct: 187 IFLETVAGIPGMVAGTLRHLTSLRRMRRDHGWIHTLLEEAENERMHLLTFLKLKQPGPVF 246

Query: 211 RMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVP 267
           R  V+  QGV +NAFF+ YL+SPK  HR VGY+EEEA+H+YT  L+DID+  +    N+P
Sbjct: 247 RFAVMISQGVMYNAFFLSYLISPKACHRFVGYIEEEAVHTYTVLLEDIDANKLPLFSNLP 306

Query: 268 APAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           APA+A  YW+L  DA  +D++  +RADEA+H  VNH  +D+  + K+  DA  P   H
Sbjct: 307 APAMAKSYWKLGDDAMFRDLVLAVRADEANHCVVNHTFADMHQEFKQ--DAVNPFSIH 362


>gi|77820273|gb|ABB04277.1| alternative oxidase isoform A [Acanthamoeba castellanii]
 gi|77820275|gb|ABB04278.1| alternative oxidase isoform A [Acanthamoeba castellanii]
 gi|440794064|gb|ELR15235.1| alternative oxidase isoform B, putative [Acanthamoeba castellanii
           str. Neff]
          Length = 370

 Score =  197 bits (501), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 102/221 (46%), Positives = 136/221 (61%), Gaps = 15/221 (6%)

Query: 115 KHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGC--------RAMMLETVAAVPGMVGGM 166
            H  P    DK+A  TV+L+R   D      +G         R + LETVA VPG V  +
Sbjct: 154 NHTPPENLTDKLALNTVRLMRFNFDWMSGYSWGKLTEADWLRRIIFLETVAGVPGSVAAI 213

Query: 167 LLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFF 226
           L HL SLR+ +   GWI  LLEEAENERMHL+T ++L +P    R  V   QG+FFN FF
Sbjct: 214 LRHLHSLRRLKRDHGWIHTLLEEAENERMHLLTGLKLKQPGKIFRTAVWVTQGIFFNFFF 273

Query: 227 VLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAIDYWRLPKDAT 283
             YL+SP+  HR VGYLEEEA+ +YT  L D+D+G +   ++ PAP IA  YW++  DA 
Sbjct: 274 AAYLVSPRFCHRFVGYLEEEAVRTYTHLLHDLDAGKLPEWKDTPAPEIARQYWKMGDDAK 333

Query: 284 LKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGY 324
            +DV+ +IRADEAHHR+VNH  +++Q +    +D P P G+
Sbjct: 334 WRDVVALIRADEAHHREVNHTFANLQLE----QDNPFPPGH 370


>gi|452840505|gb|EME42443.1| hypothetical protein DOTSEDRAFT_175510 [Dothistroma septosporum
           NZE10]
          Length = 342

 Score =  197 bits (500), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 99/207 (47%), Positives = 136/207 (65%), Gaps = 14/207 (6%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDL----------FFQRRYGCRAMMLETVAAVPGMVGG 165
           H    T  DKVA   V+ LR   DL            +R+Y  R + LE+VA VPGMV G
Sbjct: 94  HREAKTMSDKVAVGFVRTLRWGLDLASGYTKNSGGMTERKYMIRNIFLESVAGVPGMVAG 153

Query: 166 MLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAF 225
           ML HL+S+R  +   GW+++LLEE+ NERMHL+T +++ +P W+ R LVL  QGVFFNAF
Sbjct: 154 MLRHLRSMRTMKRDNGWMESLLEESYNERMHLLTFLKMAEPGWFMRFLVLGAQGVFFNAF 213

Query: 226 FVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAIDYWRLPKD- 281
           FV YL+SPK  HR VGYLEEEA+ +YT  ++DID+G +     + AP IA+ YW +P+  
Sbjct: 214 FVSYLVSPKTCHRFVGYLEEEAVLTYTREIEDIDAGRLPKWSQMEAPEIAVKYWNMPEGH 273

Query: 282 ATLKDVITVIRADEAHHRDVNHFASDI 308
            T++D++  IRADE+ HR+VNH   ++
Sbjct: 274 RTMRDLLLYIRADESKHREVNHTLGNL 300


>gi|121710154|ref|XP_001272693.1| alternative oxidase AlxA, putative [Aspergillus clavatus NRRL 1]
 gi|119400843|gb|EAW11267.1| alternative oxidase AlxA, putative [Aspergillus clavatus NRRL 1]
          Length = 357

 Score =  197 bits (500), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 103/216 (47%), Positives = 142/216 (65%), Gaps = 22/216 (10%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDLF---------------FQ---RRYGCRAMMLETVA 157
           H    T+ D VA  TV++LR   DL                FQ   +++  R + LE+VA
Sbjct: 104 HRDAKTWSDWVALGTVRVLRWGMDLLSGYKHPKPGQESNTKFQMTEQKWLTRFIFLESVA 163

Query: 158 AVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTV 217
            VPGMVGGML HL+SLR+ +   GWI+ LLEEA NERMHL+T ++L +P W+ R++VL  
Sbjct: 164 GVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLKLAEPGWFMRLMVLGA 223

Query: 218 QGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAID 274
           QGVFFN FF+ YL+SP+  HR VGYLEEEA+ +YT  LKD+++G +   E + AP IA+ 
Sbjct: 224 QGVFFNGFFLSYLVSPRTCHRFVGYLEEEAVITYTRALKDLETGKLPDWEKLEAPEIAVQ 283

Query: 275 YWRLPKD-ATLKDVITVIRADEAHHRDVNHFASDIQ 309
           YW +P+   T+KD++  IRADEA HR+VNH   +++
Sbjct: 284 YWNMPEGHRTMKDLLLYIRADEAKHREVNHTLGNLK 319


>gi|154281621|ref|XP_001541623.1| alternative oxidase, mitochondrial precursor [Ajellomyces
           capsulatus NAm1]
 gi|150411802|gb|EDN07190.1| alternative oxidase, mitochondrial precursor [Ajellomyces
           capsulatus NAm1]
          Length = 357

 Score =  196 bits (499), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 101/219 (46%), Positives = 140/219 (63%), Gaps = 25/219 (11%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDL---------------------FFQRRYGCRAMMLE 154
           H     + D VA  TV+ LR  TDL                       +R++  R + LE
Sbjct: 101 HREAKNWSDWVALGTVRFLRWATDLATGYRHAAPGKQGVEVPEQFQMTERKWVIRFIFLE 160

Query: 155 TVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLV 214
           TVA VPGMVGGML HL+SLR+ +   GWI+ LLEEA NERMHL++ ++L +P W+ R++V
Sbjct: 161 TVAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLSFLKLAQPGWFMRLMV 220

Query: 215 LTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAI 271
           L  QGVFFN FF+ YL+SP+  HR VGYLEEEA+ +YT  +KD++SG +    N  AP I
Sbjct: 221 LGAQGVFFNGFFISYLISPRTCHRFVGYLEEEAVMTYTHAIKDLESGKLPNWANQAAPDI 280

Query: 272 AIDYWRLPKDA-TLKDVITVIRADEAHHRDVNHFASDIQ 309
           A+ YW++P+   T+ D++  IRADEA HR+VNH  ++++
Sbjct: 281 AVAYWQMPEGKRTILDLLYYIRADEAKHREVNHTLANLK 319


>gi|302662223|ref|XP_003022769.1| hypothetical protein TRV_03103 [Trichophyton verrucosum HKI 0517]
 gi|291186732|gb|EFE42151.1| hypothetical protein TRV_03103 [Trichophyton verrucosum HKI 0517]
          Length = 262

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 105/217 (48%), Positives = 141/217 (64%), Gaps = 23/217 (10%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDL----------------FFQ---RRYGCRAMMLETV 156
           H    ++ D VA  TV+LLR  TDL                 FQ   R++  R + LETV
Sbjct: 8   HRETKSWSDWVALGTVRLLRWGTDLATGYRHPKAGEPAPPKHFQMNERKWLIRFVFLETV 67

Query: 157 AAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLT 216
           A VPGMVGGML HL SLRK +   GWI+ LLEEA NE MHL+T ++L +P W+ R++VL 
Sbjct: 68  AGVPGMVGGMLRHLHSLRKMKRDNGWIETLLEEAYNEHMHLLTFLKLAEPGWFMRLMVLG 127

Query: 217 VQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAI 273
            QGVFFN FF+ YL+SP+  HR VGYLEEEA+ +YT  +KD+++G +    ++PAP IAI
Sbjct: 128 AQGVFFNGFFLSYLISPRTCHRFVGYLEEEAVLTYTHAIKDLEAGKLPAWTDLPAPDIAI 187

Query: 274 DYWRLPK-DATLKDVITVIRADEAHHRDVNHFASDIQ 309
            YW +PK +  + D++  IRADEA HR+VNH  +++ 
Sbjct: 188 KYWNMPKGNQKMVDLLYYIRADEAKHREVNHTLANLN 224


>gi|443727462|gb|ELU14203.1| hypothetical protein CAPTEDRAFT_151460 [Capitella teleta]
          Length = 233

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 103/199 (51%), Positives = 128/199 (64%), Gaps = 11/199 (5%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDLFF--------QRRYGCRAMMLETVAAVPGMVGGML 167
           H  P  F+D  A+  VK  R   D           +RR+  R   LETVAAVPGMV  M+
Sbjct: 18  HKKPEGFIDNFAFIGVKTTRTFFDAVSGFNRGERNERRWLTRLCFLETVAAVPGMVAAMV 77

Query: 168 LHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFV 227
            HL S+RK     GWI  LLEEAENERMHLMT + L +P W  RM+V+  QGVF   F  
Sbjct: 78  RHLNSIRKMSRDHGWIHTLLEEAENERMHLMTFLLLKQPSWAFRMVVVITQGVFVTGFSC 137

Query: 228 LYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIEN---VPAPAIAIDYWRLPKDATL 284
            Y+LSPKL HR VGYLEEEA+ +YT+ LK+I++G++++    PA  +AI YW L +DA +
Sbjct: 138 AYMLSPKLCHRFVGYLEEEAVVTYTKLLKEIETGNMQHWLTQPASQVAIHYWNLAEDAKM 197

Query: 285 KDVITVIRADEAHHRDVNH 303
           +DVI  IRADEAHHR VNH
Sbjct: 198 RDVILAIRADEAHHRVVNH 216


>gi|296813341|ref|XP_002847008.1| alternative oxidase [Arthroderma otae CBS 113480]
 gi|238842264|gb|EEQ31926.1| alternative oxidase [Arthroderma otae CBS 113480]
          Length = 358

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 104/217 (47%), Positives = 140/217 (64%), Gaps = 23/217 (10%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDL----------------FFQ---RRYGCRAMMLETV 156
           H     + D VA  TV+LLR  TDL                 FQ   R++  R + LETV
Sbjct: 104 HRETKNWSDWVALGTVRLLRWGTDLATGYKHPKPGEAAPSKHFQMNERKWLIRFVFLETV 163

Query: 157 AAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLT 216
           A VPGMVGGML HL SLRK +   GWI+ LLEEA NERMHL+T ++L +P W+ R++VL 
Sbjct: 164 AGVPGMVGGMLRHLHSLRKMKRDNGWIETLLEEAYNERMHLLTFLKLAEPGWFMRLMVLG 223

Query: 217 VQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAI 273
            QGVFFN FF+ YL+SP+  HR VGYLEEEA+ +YT  +KD+++G +    ++PAP IAI
Sbjct: 224 AQGVFFNGFFLSYLISPRTCHRFVGYLEEEAVLTYTHAIKDLEAGKLPAWSDLPAPDIAI 283

Query: 274 DYWRLPKD-ATLKDVITVIRADEAHHRDVNHFASDIQ 309
            YW +P+    + D++  +RADEA HR+VNH  +++ 
Sbjct: 284 KYWNMPEGHQKMLDLLYYVRADEAKHREVNHTLANLN 320


>gi|350631272|gb|EHA19643.1| alternative oxidase [Aspergillus niger ATCC 1015]
          Length = 351

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 98/216 (45%), Positives = 141/216 (65%), Gaps = 22/216 (10%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDL------------------FFQRRYGCRAMMLETVA 157
           H     + D VA  TV++LR   DL                    ++++  R + LE+VA
Sbjct: 98  HRDAKNWADWVALGTVRMLRWGMDLVTGYRHPPPGREHEARFKMTEQKWLTRFIFLESVA 157

Query: 158 AVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTV 217
            VPGMVGGML HL+SLR+ +   GWI+ LLEEA NERMHL+T ++L +P W+ R++VL  
Sbjct: 158 GVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLKLAEPGWFMRLMVLGA 217

Query: 218 QGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAID 274
           QGVFFN FF+ YL+SP++ HR VGYLEEEA+ +YT  +K+I++GS+   E   AP IA+ 
Sbjct: 218 QGVFFNGFFLSYLMSPRICHRFVGYLEEEAVITYTRAIKEIEAGSLPVWEKTEAPEIAVQ 277

Query: 275 YWRLPK-DATLKDVITVIRADEAHHRDVNHFASDIQ 309
           YW++P+   ++KD++  +RADEA HR+VNH   ++ 
Sbjct: 278 YWKMPEGQRSMKDLLLYVRADEAKHREVNHTLGNLN 313


>gi|145243920|ref|XP_001394472.1| alternative oxidase [Aspergillus niger CBS 513.88]
 gi|134079156|emb|CAK40685.1| alternative oxidase aox1-Aspergillus niger
          Length = 351

 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 98/216 (45%), Positives = 141/216 (65%), Gaps = 22/216 (10%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDL------------------FFQRRYGCRAMMLETVA 157
           H     + D VA  TV++LR   DL                    ++++  R + LE+VA
Sbjct: 98  HRDAKNWADWVALGTVRMLRWGMDLVTGYRHPPPGREHEARFKMTEQKWLTRFIFLESVA 157

Query: 158 AVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTV 217
            VPGMVGGML HL+SLR+ +   GWI+ LLEEA NERMHL+T ++L +P W+ R++VL  
Sbjct: 158 GVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLKLAEPGWFMRLMVLGA 217

Query: 218 QGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAID 274
           QGVFFN FF+ YL+SP++ HR VGYLEEEA+ +YT  +K+I++GS+   E   AP IA+ 
Sbjct: 218 QGVFFNGFFLSYLMSPRICHRFVGYLEEEAVITYTRAIKEIEAGSLPVWEKTEAPEIAVQ 277

Query: 275 YWRLPK-DATLKDVITVIRADEAHHRDVNHFASDIQ 309
           YW++P+   ++KD++  +RADEA HR+VNH   ++ 
Sbjct: 278 YWKMPEGQRSMKDLLLYVRADEAKHREVNHTLGNLN 313


>gi|358367171|dbj|GAA83790.1| alternative oxidase, mitochondrial [Aspergillus kawachii IFO 4308]
          Length = 351

 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 98/216 (45%), Positives = 141/216 (65%), Gaps = 22/216 (10%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDL------------------FFQRRYGCRAMMLETVA 157
           H     + D VA  TV++LR   DL                    ++++  R + LE+VA
Sbjct: 98  HRDAKNWADWVALGTVRMLRWGMDLVTGYRHPPPGREHEARFKMTEQKWLTRFIFLESVA 157

Query: 158 AVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTV 217
            VPGMVGGML HL+SLR+ +   GWI+ LLEEA NERMHL+T ++L +P W+ R++VL  
Sbjct: 158 GVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLKLAEPGWFMRLMVLGA 217

Query: 218 QGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAID 274
           QGVFFN FF+ YL+SP++ HR VGYLEEEA+ +YT  +K+I++GS+   E   AP IA+ 
Sbjct: 218 QGVFFNGFFLSYLMSPRICHRFVGYLEEEAVITYTRAIKEIEAGSLPAWEKTEAPEIAVQ 277

Query: 275 YWRLPK-DATLKDVITVIRADEAHHRDVNHFASDIQ 309
           YW++P+   ++KD++  +RADEA HR+VNH   ++ 
Sbjct: 278 YWKMPEGQRSMKDLLLYVRADEAKHREVNHTLGNLN 313


>gi|6226552|sp|O74180.2|AOX_ASPNG RecName: Full=Alternative oxidase, mitochondrial; Flags: Precursor
 gi|4521101|dbj|BAA32033.2| alternative oxidase [Aspergillus niger]
 gi|9650909|dbj|BAB03469.1| alternative oxidase [Aspergillus niger]
          Length = 351

 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 98/216 (45%), Positives = 141/216 (65%), Gaps = 22/216 (10%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDL------------------FFQRRYGCRAMMLETVA 157
           H     + D VA  TV++LR   DL                    ++++  R + LE+VA
Sbjct: 98  HRDAKNWADWVALGTVRMLRWGMDLVTGYRHPPPGREHEARFKMTEQKWLTRFIFLESVA 157

Query: 158 AVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTV 217
            VPGMVGGML HL+SLR+ +   GWI+ LLEEA NERMHL+T ++L +P W+ R++VL  
Sbjct: 158 GVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLKLAEPGWFMRLMVLGA 217

Query: 218 QGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAID 274
           QGVFFN FF+ YL+SP++ HR VGYLEEEA+ +YT  +K+I++GS+   E   AP IA+ 
Sbjct: 218 QGVFFNGFFLSYLMSPRICHRFVGYLEEEAVITYTRAIKEIEAGSLPAWEKTEAPEIAVQ 277

Query: 275 YWRLPK-DATLKDVITVIRADEAHHRDVNHFASDIQ 309
           YW++P+   ++KD++  +RADEA HR+VNH   ++ 
Sbjct: 278 YWKMPEGQRSMKDLLLYVRADEAKHREVNHTLGNLN 313


>gi|317032280|ref|XP_003188816.1| alternative oxidase [Aspergillus niger CBS 513.88]
          Length = 261

 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 98/216 (45%), Positives = 141/216 (65%), Gaps = 22/216 (10%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDL------------------FFQRRYGCRAMMLETVA 157
           H     + D VA  TV++LR   DL                    ++++  R + LE+VA
Sbjct: 8   HRDAKNWADWVALGTVRMLRWGMDLVTGYRHPPPGREHEARFKMTEQKWLTRFIFLESVA 67

Query: 158 AVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTV 217
            VPGMVGGML HL+SLR+ +   GWI+ LLEEA NERMHL+T ++L +P W+ R++VL  
Sbjct: 68  GVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLKLAEPGWFMRLMVLGA 127

Query: 218 QGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAID 274
           QGVFFN FF+ YL+SP++ HR VGYLEEEA+ +YT  +K+I++GS+   E   AP IA+ 
Sbjct: 128 QGVFFNGFFLSYLMSPRICHRFVGYLEEEAVITYTRAIKEIEAGSLPVWEKTEAPEIAVQ 187

Query: 275 YWRLPK-DATLKDVITVIRADEAHHRDVNHFASDIQ 309
           YW++P+   ++KD++  +RADEA HR+VNH   ++ 
Sbjct: 188 YWKMPEGQRSMKDLLLYVRADEAKHREVNHTLGNLN 223


>gi|294955666|ref|XP_002788619.1| alternative oxidase, putative [Perkinsus marinus ATCC 50983]
 gi|239904160|gb|EER20415.1| alternative oxidase, putative [Perkinsus marinus ATCC 50983]
          Length = 305

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 107/216 (49%), Positives = 133/216 (61%), Gaps = 12/216 (5%)

Query: 100 MPWETYRADLSIDLK-KHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCR--------A 150
           +P   + + L  D++  H+ P T  DK AY +V+ LR   DL    R+G R         
Sbjct: 73  LPHPIWDSSLVNDVELTHYPPNTLADKAAYASVRSLRTVFDLLSGYRFGRRDAKLWIRRV 132

Query: 151 MMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYE 210
           + LETVA VPGMVG M  HL+SLRK +   GWI  LLEEAENERMHLM  + L+KP    
Sbjct: 133 VFLETVAGVPGMVGAMNRHLRSLRKMERDFGWIHTLLEEAENERMHLMIALSLMKPGPLL 192

Query: 211 RMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVP--- 267
           R LVL  QG FF  + + Y LSP  AHR VGYLEEEA+ +YT  L+ +D G I       
Sbjct: 193 RALVLGAQGAFFTFYGLAYALSPNYAHRFVGYLEEEAVLTYTCLLQSVDKGQIPEFALQQ 252

Query: 268 APAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNH 303
           AP +A DY++LP  ATL+DV   +RADE+HHRDVNH
Sbjct: 253 APFVAQDYYQLPSSATLRDVFACMRADESHHRDVNH 288


>gi|409079050|gb|EKM79412.1| AOX alternative oxidase mitochondrial [Agaricus bisporus var.
           burnettii JB137-S8]
          Length = 375

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 114/255 (44%), Positives = 146/255 (57%), Gaps = 37/255 (14%)

Query: 84  PKITREDGSPWPWNCFMPWETYRADLSIDLKK-HHVPTTFLDKVAYRTVKLLRIPTD--- 139
           P + R D     W  F P   Y  D    +K  H     F D VAY  VKL R+  D   
Sbjct: 73  PTMVRGD-----WVLFHP--VYNKDEVKAVKVLHRKRLNFSDSVAYGLVKLARVLFDKIS 125

Query: 140 --------------LFFQRRYG---------CRAMMLETVAAVPGMVGGMLLHLKSLRKF 176
                         L+  R+ G          R + LE++A VPGMV   L HL SLR  
Sbjct: 126 GYKHMKTPPDPNMSLYELRKAGYLLDDKGWLSRILFLESIAGVPGMVAATLRHLTSLRLM 185

Query: 177 QHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLA 236
           +  GGWI   LEEAENERMHLMT + L KP  + R LVL  QGVF+N FF+ YL+SP++ 
Sbjct: 186 RRDGGWIHTCLEEAENERMHLMTFMSLRKPSIFFRALVLGAQGVFYNLFFLSYLVSPRIC 245

Query: 237 HRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAIDYWRLPKDATLKDVITVIRA 293
           HR VGYLEEEA+++YT  + D+++G I    ++PAP IAIDYWRLPK+A L DVI  +R+
Sbjct: 246 HRFVGYLEEEAVYTYTHCIADLEAGRIPEWSDMPAPQIAIDYWRLPKNAKLLDVIYAVRS 305

Query: 294 DEAHHRDVNHFASDI 308
           DE+ HR VNH  +++
Sbjct: 306 DESTHRFVNHSFANL 320


>gi|378731675|gb|EHY58134.1| alternative oxidase AlxA [Exophiala dermatitidis NIH/UT8656]
          Length = 349

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 94/210 (44%), Positives = 140/210 (66%), Gaps = 17/210 (8%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDL-------------FFQRRYGCRAMMLETVAAVPGM 162
           H    T  DK+AY  V+ LR  TDL               +R++  R + LETVA VPGM
Sbjct: 101 HRETRTLSDKIAYNMVRFLRWGTDLATGYRHDPNKPYIMNERKWLVRFIFLETVAGVPGM 160

Query: 163 VGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFF 222
           VGGML H +SLR+ +   GWI+ LLE+A NERMHL+T +++ +P W+ +++++  QGVF 
Sbjct: 161 VGGMLRHFRSLRRMKRDNGWIETLLEDAYNERMHLLTFLKMAEPGWFMKLMIMGAQGVFA 220

Query: 223 NAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAIDYWRLP 279
           N FF+ YL+SPK+ HR VGYLEEEA  +YT  ++D+++G +   +N+ AP IA+ YW++P
Sbjct: 221 NGFFLAYLVSPKICHRFVGYLEEEATKTYTYAIEDLENGKLPAWQNLEAPDIAVSYWKMP 280

Query: 280 KD-ATLKDVITVIRADEAHHRDVNHFASDI 308
           +   T+KD++  IRADEA HR+++H   ++
Sbjct: 281 EGHRTMKDLLYYIRADEAKHREIHHTLGNL 310


>gi|299132133|ref|ZP_07025328.1| Alternative oxidase [Afipia sp. 1NLS2]
 gi|298592270|gb|EFI52470.1| Alternative oxidase [Afipia sp. 1NLS2]
          Length = 220

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 92/207 (44%), Positives = 133/207 (64%), Gaps = 1/207 (0%)

Query: 112 DLKKHHVPTTFLDKVAYRTVKLLR-IPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHL 170
           +L +HH P    D++A+   +L+  +  + FF  RYG + ++LETV AVP MV   LLHL
Sbjct: 8   NLLRHHTPERIPDRIAFGLARLVAWMAGNTFFNSRYGDQVIVLETVTAVPPMVVATLLHL 67

Query: 171 KSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYL 230
           K LR+    GGW++  ++EAE++R HLM  V L KP  +ER L++ VQG+F+NA+F LYL
Sbjct: 68  KCLRRMLDDGGWVRTFMDEAESQRTHLMAFVALAKPNAWERFLIVLVQGIFYNAYFFLYL 127

Query: 231 LSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITV 290
           +S   AHR+  Y  E+A+  Y++YL  I+SG     PAPA+AI YW L  DA ++D+I  
Sbjct: 128 ISAGTAHRLAAYFAEQAVQGYSKYLSQIESGERAMQPAPALAIAYWALAPDAQVRDMIAS 187

Query: 291 IRADEAHHRDVNHFASDIQFQGKELRD 317
           +  DEA HRD++H  +D   QG+   D
Sbjct: 188 MLEDEAIHRDLHHAFADALMQGQTFPD 214


>gi|336470495|gb|EGO58656.1| alternative oxidase mitochondrial precursor [Neurospora tetrasperma
           FGSC 2508]
 gi|350291545|gb|EGZ72740.1| alternative oxidase mitochondrial precursor [Neurospora tetrasperma
           FGSC 2509]
          Length = 375

 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 113/288 (39%), Positives = 167/288 (57%), Gaps = 41/288 (14%)

Query: 53  SYSSSSESVPEKVKEKGENGIVPSSYWGISRPKITR-EDGS-----PWPWNCFMPWETYR 106
           S S++S+     +     + +VP+++ G S    +   DG+     P  W    P + ++
Sbjct: 43  STSNTSKKPAVAIPTGPVSPLVPATHVGTSSASTSEVRDGNAFATLPLTW----PHDGWK 98

Query: 107 ADLSIDL-KKHHVPTTFLDKVAYRTVKLLRIPTDL------------------------F 141
            ++ +++   H  P TF D VA++ V+  R   DL                         
Sbjct: 99  ENVLLNVVPSHREPRTFGDWVAWKIVRTCRFWMDLVTGMRPEQQVDSKNPTTALAASKPL 158

Query: 142 FQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMV 201
            +R++  R + LE++A VPGMV G L HL+S+R+FQ   GWIK+LLEE+ NERMHL+T +
Sbjct: 159 TERQWLVRFIFLESIAGVPGMVAGGLRHLQSIRRFQPDQGWIKSLLEESYNERMHLLTFL 218

Query: 202 ELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSG 261
           E+ KP W+ R++VL  QGVF+NA F+ YLLSPK+ HR VGYLEEEA+H+YT  L ++D G
Sbjct: 219 EMYKPGWFMRLVVLGAQGVFYNAMFISYLLSPKICHRFVGYLEEEAVHTYTRCLLELDHG 278

Query: 262 SIE-----NVPAPAIAIDYWRLPKD-ATLKDVITVIRADEAHHRDVNH 303
            ++     N   P IA+ YW +P+   T+KD+I  +RADEA HR VNH
Sbjct: 279 CLKRWSDPNFRIPDIAVRYWNMPEGHRTMKDLILYVRADEASHRGVNH 326


>gi|85091906|ref|XP_959131.1| alternative oxidase, mitochondrial precursor [Neurospora crassa
           OR74A]
 gi|28920531|gb|EAA29895.1| alternative oxidase, mitochondrial precursor [Neurospora crassa
           OR74A]
          Length = 375

 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 113/288 (39%), Positives = 167/288 (57%), Gaps = 41/288 (14%)

Query: 53  SYSSSSESVPEKVKEKGENGIVPSSYWGISRPKITR-EDGS-----PWPWNCFMPWETYR 106
           S S++S+     +     + +VP+++ G S    +   DG+     P  W    P + ++
Sbjct: 43  STSNTSKKPAVAIPTGPVSPLVPATHVGTSSASTSEVRDGNAFATLPLTW----PHDGWK 98

Query: 107 ADLSIDL-KKHHVPTTFLDKVAYRTVKLLRIPTDL------------------------F 141
            ++ +++   H  P TF D VA++ V+  R   DL                         
Sbjct: 99  ENVLLNVVPSHREPRTFGDWVAWKIVRTCRFWMDLVTGMRPEQQVDSKNPTTALAASKPL 158

Query: 142 FQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMV 201
            +R++  R + LE++A VPGMV G L HL+S+R+FQ   GWIK+LLEE+ NERMHL+T +
Sbjct: 159 TERQWLVRFIFLESIAGVPGMVAGGLRHLQSIRRFQPDQGWIKSLLEESYNERMHLLTFL 218

Query: 202 ELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSG 261
           E+ KP W+ R++VL  QGVF+NA F+ YLLSPK+ HR VGYLEEEA+H+YT  L ++D G
Sbjct: 219 EMYKPGWFMRLVVLGAQGVFYNAMFISYLLSPKICHRFVGYLEEEAVHTYTRCLLELDHG 278

Query: 262 SIE-----NVPAPAIAIDYWRLPKD-ATLKDVITVIRADEAHHRDVNH 303
            ++     N   P IA+ YW +P+   T+KD+I  +RADEA HR VNH
Sbjct: 279 CLKRWSDPNFRIPDIAVRYWNMPEGHRTMKDLILYVRADEASHRGVNH 326


>gi|426195957|gb|EKV45886.1| AOX alternative oxidase mitochondrial precursor [Agaricus bisporus
           var. bisporus H97]
          Length = 356

 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 114/255 (44%), Positives = 146/255 (57%), Gaps = 37/255 (14%)

Query: 84  PKITREDGSPWPWNCFMPWETYRADLSIDLKK-HHVPTTFLDKVAYRTVKLLRIPTD--- 139
           P + R D     W  F P   Y  D    +K  H     F D VAY  VKL R+  D   
Sbjct: 54  PTMVRGD-----WVLFHP--VYNKDEVKAVKVLHRKRLNFSDSVAYGLVKLARVLFDKIS 106

Query: 140 --------------LFFQRRYG---------CRAMMLETVAAVPGMVGGMLLHLKSLRKF 176
                         L+  R+ G          R + LE++A VPGMV   L HL SLR  
Sbjct: 107 GYKHMKTPPDPNMSLYELRKAGYLLDDKGWLSRILFLESIAGVPGMVAATLRHLTSLRLM 166

Query: 177 QHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLA 236
           +  GGWI   LEEAENERMHLMT + L KP  + R LVL  QGVF+N FF+ YL+SP++ 
Sbjct: 167 RRDGGWIHTCLEEAENERMHLMTFMSLRKPSIFFRALVLGAQGVFYNLFFLSYLVSPRIC 226

Query: 237 HRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAIDYWRLPKDATLKDVITVIRA 293
           HR VGYLEEEA+++YT  + D+++G I    ++PAP IAIDYWRLPK+A L DVI  +R+
Sbjct: 227 HRFVGYLEEEAVYTYTHCIADLEAGRIPEWSDMPAPQIAIDYWRLPKNAKLLDVIYAVRS 286

Query: 294 DEAHHRDVNHFASDI 308
           DE+ HR VNH  +++
Sbjct: 287 DESTHRFVNHSFANL 301


>gi|315050338|ref|XP_003174543.1| alternative oxidase [Arthroderma gypseum CBS 118893]
 gi|311339858|gb|EFQ99060.1| alternative oxidase [Arthroderma gypseum CBS 118893]
          Length = 358

 Score =  194 bits (494), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 103/209 (49%), Positives = 137/209 (65%), Gaps = 23/209 (11%)

Query: 124 DKVAYRTVKLLRIPTDL----------------FFQ---RRYGCRAMMLETVAAVPGMVG 164
           D VA  TV+LLR  TDL                 FQ   R++  R + LETVA VPGMVG
Sbjct: 112 DWVALGTVRLLRWGTDLATGYRHPKAGEPVPSGHFQMNERKWLIRFVFLETVAGVPGMVG 171

Query: 165 GMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNA 224
           GML HL SLRK +   GWI+ LLEEA NERMHL+T ++L +P W+ R++VL  QGVFFN 
Sbjct: 172 GMLRHLHSLRKMKRDNGWIETLLEEAYNERMHLLTFLKLAEPGWFMRLMVLGAQGVFFNG 231

Query: 225 FFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAIDYWRLPKD 281
           FF+ YL+SP+  HR VGYLEEEA+ +YT  +KD++ G +   + +PAP IAI YW +P+ 
Sbjct: 232 FFLSYLISPRTCHRFVGYLEEEAVLTYTHAIKDLEDGKLPAWKELPAPDIAIKYWNMPEG 291

Query: 282 -ATLKDVITVIRADEAHHRDVNHFASDIQ 309
              + D++  +RADEA HR+VNH  +++ 
Sbjct: 292 HQKMVDLLYYVRADEAKHREVNHTLANLN 320


>gi|115399176|ref|XP_001215177.1| alternative oxidase, mitochondrial precursor [Aspergillus terreus
           NIH2624]
 gi|114192060|gb|EAU33760.1| alternative oxidase, mitochondrial precursor [Aspergillus terreus
           NIH2624]
          Length = 355

 Score =  194 bits (493), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 99/215 (46%), Positives = 140/215 (65%), Gaps = 22/215 (10%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDL------------------FFQRRYGCRAMMLETVA 157
           H     + D VA  TV++LR   DL                    ++++  R + LE+VA
Sbjct: 102 HREAKNWSDWVALGTVRMLRWGMDLVTGYRHPPPGKENDVRFRMTEQKWLTRFVFLESVA 161

Query: 158 AVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTV 217
            VPGMVGGML HL+SLR+ +   GWI+ LLEEA NERMHL+T ++L +P W+ R++VL  
Sbjct: 162 GVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAFNERMHLLTFLKLAEPGWFMRLMVLGA 221

Query: 218 QGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAID 274
           QGVFFN FF+ YL+SP+  HR VGYLEEEA+ +YT  +KD+++G++   E   AP IAI 
Sbjct: 222 QGVFFNGFFLSYLVSPRTCHRFVGYLEEEAVITYTRAIKDLENGNLPLWEKKEAPEIAIQ 281

Query: 275 YWRLPKDA-TLKDVITVIRADEAHHRDVNHFASDI 308
           YW++P+   T+KD++  +RADEA HR+VNH   ++
Sbjct: 282 YWKMPEGKRTMKDLLLYVRADEAKHREVNHTLGNL 316


>gi|226292243|gb|EEH47663.1| alternative oxidase [Paracoccidioides brasiliensis Pb18]
          Length = 352

 Score =  194 bits (493), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 99/215 (46%), Positives = 141/215 (65%), Gaps = 21/215 (9%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDL-----------------FFQRRYGCRAMMLETVAA 158
           H    T+ D VA  TV++LR  TDL                   ++++  R + LETVA 
Sbjct: 100 HRNAETWSDWVALGTVRMLRWATDLATGYNHPGKSDQNEQFVMTEKKWIIRFIFLETVAG 159

Query: 159 VPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQ 218
           VPGMVGGML HL+SLR+ +   GWI+ LLEEA NERMHL++ ++L KP W+ R++VL  Q
Sbjct: 160 VPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLSFLKLAKPGWFMRLMVLGAQ 219

Query: 219 GVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAIDY 275
           GVFFN+FF+ YL+SP+  HR VGYLEEEA+ +YT  + D+++G +    N  AP IA+ Y
Sbjct: 220 GVFFNSFFMAYLISPRTCHRFVGYLEEEAVMTYTHAINDLEAGKLPEWANKEAPDIAVAY 279

Query: 276 WRLPKDA-TLKDVITVIRADEAHHRDVNHFASDIQ 309
           W +P++  T+ D++  IRADEA H +VNH  ++++
Sbjct: 280 WHMPENKRTILDLLYYIRADEAKHCEVNHTLANLK 314


>gi|225681058|gb|EEH19342.1| alternative oxidase [Paracoccidioides brasiliensis Pb03]
          Length = 352

 Score =  194 bits (492), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 99/215 (46%), Positives = 141/215 (65%), Gaps = 21/215 (9%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDL-----------------FFQRRYGCRAMMLETVAA 158
           H    T+ D VA  TV++LR  TDL                   ++++  R + LETVA 
Sbjct: 100 HRNAETWSDWVALGTVRMLRWATDLATGYKHPGKSDQNEQFVMTEKKWIIRFIFLETVAG 159

Query: 159 VPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQ 218
           VPGMVGGML HL+SLR+ +   GWI+ LLEEA NERMHL++ ++L KP W+ R++VL  Q
Sbjct: 160 VPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLSFLKLAKPGWFMRLMVLGAQ 219

Query: 219 GVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAIDY 275
           GVFFN+FF+ YL+SP+  HR VGYLEEEA+ +YT  + D+++G +    N  AP IA+ Y
Sbjct: 220 GVFFNSFFMAYLISPRTCHRFVGYLEEEAVMTYTHAINDLEAGKLPEWANKEAPDIAVAY 279

Query: 276 WRLPKDA-TLKDVITVIRADEAHHRDVNHFASDIQ 309
           W +P++  T+ D++  IRADEA H +VNH  ++++
Sbjct: 280 WHMPENKRTILDLLYYIRADEAKHCEVNHTLANLK 314


>gi|51701294|sp|Q9P959.2|AOX_EMENI RecName: Full=Alternative oxidase, mitochondrial; Flags: Precursor
 gi|259487471|tpe|CBF86176.1| TPA: Alternative oxidase, mitochondrial Precursor (EC 1.-.-.-)
           [Source:UniProtKB/Swiss-Prot;Acc:Q9P959] [Aspergillus
           nidulans FGSC A4]
          Length = 354

 Score =  194 bits (492), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 100/216 (46%), Positives = 142/216 (65%), Gaps = 22/216 (10%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDLF---------------FQ---RRYGCRAMMLETVA 157
           H     + D VA  +V+LLR   DL                FQ   + +  R + LE+VA
Sbjct: 101 HREAKNWSDWVALGSVRLLRWGMDLVTGYKHPAPGQEDIKKFQMTEKEWLRRFVFLESVA 160

Query: 158 AVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTV 217
            VPGMVGGML HL+SLR+ +   GWI+ LLEEA NERMHL+T +++ +P W+ R++VL  
Sbjct: 161 GVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLKMAEPGWFMRLMVLGA 220

Query: 218 QGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAID 274
           QGVFFN FF+ YL+SP+  HR VGYLEEEA+ +YT  +KD++SG +   E + AP IA+ 
Sbjct: 221 QGVFFNGFFLSYLISPRTCHRFVGYLEEEAVLTYTRAIKDLESGRLPHWEKLEAPEIAVK 280

Query: 275 YWRLPK-DATLKDVITVIRADEAHHRDVNHFASDIQ 309
           YW++P+ + T+KD++  +RADEA HR+VNH   +++
Sbjct: 281 YWKMPEGNRTMKDLLLYVRADEAKHREVNHTLGNLK 316


>gi|402471786|gb|EJW05340.1| hypothetical protein EDEG_00610 [Edhazardia aedis USNM 41457]
          Length = 266

 Score =  194 bits (492), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 99/205 (48%), Positives = 135/205 (65%), Gaps = 3/205 (1%)

Query: 110 SIDLKK--HHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGML 167
            ID +K  H  P T  DK A+ TVK LR   D +F++ Y  RA+ LETVAA+PGM+GG+ 
Sbjct: 60  QIDYRKGYHFKPITLTDKFAHSTVKFLRSFADFYFKKDYNKRAVALETVAAIPGMIGGLY 119

Query: 168 LHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFV 227
            HL SLR  + +G  I  LL+EAENER HL+  + + KP   +++L+  VQ +FF+ +F+
Sbjct: 120 RHLYSLRSLKDNGEKISKLLKEAENERQHLLAFLAIKKPSIIDKILIHAVQPLFFSFYFM 179

Query: 228 LYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDV 287
           LY   PK AHR VGYLEEEAI SY  Y ++I  G+I+NV     A  YW++P +A L D+
Sbjct: 180 LYGFMPKTAHRFVGYLEEEAIRSYDMYEEEILKGNIKNVDISEGAKSYWKMPDNAKLLDL 239

Query: 288 ITVIRADEAHHRDVNH-FASDIQFQ 311
           +  +RADEA HRD NH FA++  F+
Sbjct: 240 VRAVRADEAAHRDANHEFANEKPFK 264


>gi|67523285|ref|XP_659703.1| hypothetical protein AN2099.2 [Aspergillus nidulans FGSC A4]
 gi|7415933|dbj|BAA93615.1| mitochondrial alternative oxidase [Emericella nidulans]
 gi|40745775|gb|EAA64931.1| hypothetical protein AN2099.2 [Aspergillus nidulans FGSC A4]
          Length = 351

 Score =  194 bits (492), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 100/216 (46%), Positives = 142/216 (65%), Gaps = 22/216 (10%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDLF---------------FQ---RRYGCRAMMLETVA 157
           H     + D VA  +V+LLR   DL                FQ   + +  R + LE+VA
Sbjct: 98  HREAKNWSDWVALGSVRLLRWGMDLVTGYKHPAPGQEDIKKFQMTEKEWLRRFVFLESVA 157

Query: 158 AVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTV 217
            VPGMVGGML HL+SLR+ +   GWI+ LLEEA NERMHL+T +++ +P W+ R++VL  
Sbjct: 158 GVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLKMAEPGWFMRLMVLGA 217

Query: 218 QGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAID 274
           QGVFFN FF+ YL+SP+  HR VGYLEEEA+ +YT  +KD++SG +   E + AP IA+ 
Sbjct: 218 QGVFFNGFFLSYLISPRTCHRFVGYLEEEAVLTYTRAIKDLESGRLPHWEKLEAPEIAVK 277

Query: 275 YWRLPK-DATLKDVITVIRADEAHHRDVNHFASDIQ 309
           YW++P+ + T+KD++  +RADEA HR+VNH   +++
Sbjct: 278 YWKMPEGNRTMKDLLLYVRADEAKHREVNHTLGNLK 313


>gi|119480199|ref|XP_001260128.1| alternative oxidase AlxA, putative [Neosartorya fischeri NRRL 181]
 gi|119408282|gb|EAW18231.1| alternative oxidase AlxA, putative [Neosartorya fischeri NRRL 181]
          Length = 345

 Score =  193 bits (491), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 99/216 (45%), Positives = 139/216 (64%), Gaps = 22/216 (10%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDL------------------FFQRRYGCRAMMLETVA 157
           H     + D VA  TV++LR   DL                    ++++  R + LE+VA
Sbjct: 92  HREAKNWSDWVALGTVRVLRWGMDLVTGYRHPKPGQEHDAKFKMTEQKWLTRFVFLESVA 151

Query: 158 AVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTV 217
            VPGMVGGML HL+SLR+ +   GWI+ LLEEA NERMHL+T ++L +P W+ R++VL  
Sbjct: 152 GVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLKLAEPGWFMRLMVLGA 211

Query: 218 QGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAID 274
           QGVFFN FF+ YL+SP+  HR VGYLEEEA+ +YT  +KDI++G +   E + AP IA+ 
Sbjct: 212 QGVFFNGFFLSYLISPRTCHRFVGYLEEEAVITYTRAIKDIEAGKLPDWEELDAPEIAVQ 271

Query: 275 YWRLPK-DATLKDVITVIRADEAHHRDVNHFASDIQ 309
           YW +P+    +KD++  +RADEA HR+VNH   ++Q
Sbjct: 272 YWNMPEGQRKMKDLLLYVRADEAKHREVNHTLGNLQ 307


>gi|302689549|ref|XP_003034454.1| hypothetical protein SCHCODRAFT_14899 [Schizophyllum commune H4-8]
 gi|300108149|gb|EFI99551.1| hypothetical protein SCHCODRAFT_14899 [Schizophyllum commune H4-8]
          Length = 378

 Score =  193 bits (491), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 103/223 (46%), Positives = 131/223 (58%), Gaps = 30/223 (13%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGC--------------------------- 148
           H VPT   DKVAYR VKL R   DL    ++                             
Sbjct: 107 HQVPTKLSDKVAYRLVKLARWGFDLVSGYKHKALPADAHKMTVQALRKDGFVLGPDGWLN 166

Query: 149 RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKW 208
           R + LE++A VPGMV   L HL+SLR  +   GWI   LEEAENERMHLMT + L K   
Sbjct: 167 RFLFLESIAGVPGMVAATLRHLQSLRLMRRDNGWIHTCLEEAENERMHLMTFMTLRKHSI 226

Query: 209 YERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---EN 265
           + R L+L  QGVF+N FF+ Y++ P  AHR VGYLEEEA+ +Y+  ++DI+S  +    N
Sbjct: 227 FFRALILGAQGVFYNLFFLTYMIMPAAAHRFVGYLEEEAVRTYSHCIQDIESNLVPEWRN 286

Query: 266 VPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDI 308
            PAP IAIDYWRLP++AT+ DVI  +RADE  HR VNH  +++
Sbjct: 287 APAPQIAIDYWRLPQNATMLDVIYAVRADETSHRFVNHSLANL 329


>gi|121712010|ref|XP_001273620.1| alternative oxidase, putative [Aspergillus clavatus NRRL 1]
 gi|119401772|gb|EAW12194.1| alternative oxidase, putative [Aspergillus clavatus NRRL 1]
          Length = 333

 Score =  193 bits (491), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 100/233 (42%), Positives = 147/233 (63%), Gaps = 33/233 (14%)

Query: 112 DLKK----HHVPTTFLDKVAYRTVKLLRIPTDL-------------------------FF 142
           D+KK    H    TF D+VA  T+++LR   DL                           
Sbjct: 65  DMKKVGIAHRETRTFSDRVALATIRMLRSGFDLVSGYRHDQAVALHKKDPATAQQKYAMT 124

Query: 143 QRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVE 202
           + +Y  R + LE++A VPGMVGGML HL+SLR+ +   GWI+ LLEE+ NERMHL+T ++
Sbjct: 125 EEKYLIRNIFLESIAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEESYNERMHLLTFLQ 184

Query: 203 LVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGS 262
           + +P  + R+LVL  QGVFFNAFF+ YL++P + HR VGYLEEEA+ +YT  + DI++G 
Sbjct: 185 MAEPGLFLRLLVLGAQGVFFNAFFIAYLVNPVICHRFVGYLEEEAVITYTREIADIEAGK 244

Query: 263 I---ENVPAPAIAIDYWRLPKD-ATLKDVITVIRADEAHHRDVNHFASDIQFQ 311
           +   EN+ AP IA+ YW +P+   +++D++  IRADEA HR+VNH   +++++
Sbjct: 245 LPKWENLQAPEIAVKYWNMPEGHRSMRDLLLYIRADEAKHREVNHTFGNLEWK 297


>gi|428180112|gb|EKX48980.1| hypothetical protein GUITHDRAFT_68249 [Guillardia theta CCMP2712]
 gi|428180113|gb|EKX48981.1| hypothetical protein GUITHDRAFT_68214 [Guillardia theta CCMP2712]
          Length = 248

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 102/207 (49%), Positives = 127/207 (61%), Gaps = 11/207 (5%)

Query: 114 KKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGC--------RAMMLETVAAVPGMVGG 165
           K H  P   +D+VA   VK  R   D F   R+G         R   LETVA VPGM  G
Sbjct: 16  KTHKKPEDMVDRVALAAVKAARWSFDTFSGYRFGNLTEGKVINRICFLETVAGVPGMTAG 75

Query: 166 MLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAF 225
           ML HL+SLR      GWI  LLEEAENERMHL+T V+L +P    R  V+  QGVF N F
Sbjct: 76  MLRHLRSLRIMDRDHGWIHTLLEEAENERMHLLTFVKLRRPGPLFRAAVVGTQGVFMNVF 135

Query: 226 FVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAIDYWRLPKDA 282
           F+ YL+SP+  HR VGYLEEEA+ +YT+ +  ID G +   +   AP IAIDYW L  +A
Sbjct: 136 FLCYLVSPRFCHRFVGYLEEEAVKTYTDIINAIDDGRLGHWKTQAAPQIAIDYWHLKPEA 195

Query: 283 TLKDVITVIRADEAHHRDVNHFASDIQ 309
           T++D++  +RADEA HRDVNH  S ++
Sbjct: 196 TMRDLMLAVRADEACHRDVNHTLSGLK 222


>gi|390603194|gb|EIN12586.1| alternative oxidase [Punctularia strigosozonata HHB-11173 SS5]
          Length = 379

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 96/183 (52%), Positives = 128/183 (69%), Gaps = 3/183 (1%)

Query: 130 TVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEE 189
           TV+ LR    L    ++  RA+ LET+AAVPGMV   + HL SLR  +   GWI  LLEE
Sbjct: 147 TVEELRKQNYLMGPDQWLQRAIFLETIAAVPGMVAASIRHLNSLRLMRRDSGWIHTLLEE 206

Query: 190 AENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIH 249
           AENERMHLMT + L +P  + R LV+  QGVF+N FF+ YL +PK+ HR VGYLEEEA+ 
Sbjct: 207 AENERMHLMTFMALRRPGLWFRTLVMGAQGVFYNVFFLSYLFAPKVCHRFVGYLEEEAVL 266

Query: 250 SYTEYLKDIDSGSI---ENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFAS 306
           +YT  ++DI++G +    ++PAP+IAIDYWRLP+D+ L DVI  IR+DE +HR VNH  +
Sbjct: 267 TYTRCIQDIEAGRLPEWADMPAPSIAIDYWRLPQDSKLLDVIYAIRSDETNHRFVNHTLA 326

Query: 307 DIQ 309
           ++ 
Sbjct: 327 NLN 329


>gi|290980396|ref|XP_002672918.1| alternative oxidase [Naegleria gruberi]
 gi|284086498|gb|EFC40174.1| alternative oxidase [Naegleria gruberi]
          Length = 294

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 98/204 (48%), Positives = 129/204 (63%)

Query: 111 IDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHL 170
            ++K+ + P    DK A   +K LR+    FF  RY   A++LETVAAVPG+V G   H 
Sbjct: 89  FEVKRSYKPVDLTDKTALAIMKFLRVFVHGFFGNRYIHHAVVLETVAAVPGIVAGGWRHF 148

Query: 171 KSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYL 230
            SLR  +   G I  L+EEAENERMHL+T +E+ KP + ER+LV+  Q  F + +   Y 
Sbjct: 149 SSLRLMRRDHGHIGELMEEAENERMHLLTWMEMTKPTFLERLLVVGAQVAFTSFYTGAYF 208

Query: 231 LSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITV 290
           ++P+  HR+VGYLEEEA+ +YTE+L  ID+G I N  AP IA+ YW L  DAT++DV+ V
Sbjct: 209 VNPRFCHRLVGYLEEEAVGAYTEFLNAIDNGDIPNCKAPEIALKYWNLKPDATMRDVVLV 268

Query: 291 IRADEAHHRDVNHFASDIQFQGKE 314
           IR DE  HRD NH  SD    G E
Sbjct: 269 IRGDECMHRDYNHDMSDKHRAGVE 292


>gi|169770083|ref|XP_001819511.1| alternative oxidase [Aspergillus oryzae RIB40]
 gi|83767370|dbj|BAE57509.1| unnamed protein product [Aspergillus oryzae RIB40]
 gi|391864037|gb|EIT73335.1| alternative oxidase [Aspergillus oryzae 3.042]
          Length = 353

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 99/216 (45%), Positives = 139/216 (64%), Gaps = 22/216 (10%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDLF---------------FQ---RRYGCRAMMLETVA 157
           H     + D VA  TV+LLR   D                 FQ   +++  R + LE+VA
Sbjct: 100 HRETKDWADWVALGTVRLLRWGMDFVTGYRHPPPGKEHEAKFQMTEQKWLTRFVFLESVA 159

Query: 158 AVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTV 217
            VPGMVGGML HL+SLR+ +   GWI+ LLEEA NERMHL+T ++L +P W+ R++VL  
Sbjct: 160 GVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLKLAEPGWFMRLMVLGA 219

Query: 218 QGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAID 274
           QGVFFN FF+ YL+SP++ HR VGYLEEEA+ +YT  ++DI+ G +     + AP IA+ 
Sbjct: 220 QGVFFNGFFLSYLMSPRICHRFVGYLEEEAVLTYTRAIQDIEHGKLPKWTKLEAPEIAVQ 279

Query: 275 YWRLPK-DATLKDVITVIRADEAHHRDVNHFASDIQ 309
           YW++P+   T+KD++  +RADEA HR+VNH   ++ 
Sbjct: 280 YWKMPEGQRTMKDLLMYVRADEAKHREVNHTLGNLN 315


>gi|70989575|ref|XP_749637.1| alternative oxidase AlxA [Aspergillus fumigatus Af293]
 gi|66847268|gb|EAL87599.1| alternative oxidase AlxA, putative [Aspergillus fumigatus Af293]
 gi|159129043|gb|EDP54157.1| alternative oxidase AlxA, putative [Aspergillus fumigatus A1163]
          Length = 352

 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 88/171 (51%), Positives = 126/171 (73%), Gaps = 4/171 (2%)

Query: 143 QRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVE 202
           ++++  R + LE+VA VPGMVGGML HL+SLR+ +   GWI+ LLEEA NERMHL+T ++
Sbjct: 144 EQKWLTRFIFLESVAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLK 203

Query: 203 LVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGS 262
           L +P W+ R++VL  QGVFFN FF+ YL+SP+  HR VGYLEEEA+ +YT  +KDI++G 
Sbjct: 204 LAEPGWFMRLMVLGAQGVFFNGFFLSYLISPRTCHRFVGYLEEEAVITYTRAIKDIETGK 263

Query: 263 I---ENVPAPAIAIDYWRLPK-DATLKDVITVIRADEAHHRDVNHFASDIQ 309
           +   E + AP IA+ YW +P+    ++D++  +RADEA HR+VNH   ++Q
Sbjct: 264 LPDWEKLDAPEIAVQYWNMPEGQRKMRDLLLYVRADEAKHREVNHTLGNLQ 314


>gi|330790443|ref|XP_003283306.1| hypothetical protein DICPUDRAFT_74305 [Dictyostelium purpureum]
 gi|325086731|gb|EGC40116.1| hypothetical protein DICPUDRAFT_74305 [Dictyostelium purpureum]
          Length = 348

 Score =  192 bits (487), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 96/208 (46%), Positives = 138/208 (66%), Gaps = 6/208 (2%)

Query: 115 KHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLR 174
           K + P T  D  AY TV  L+  +++ F  ++   A++LE++A+VPG+ GG++LHL++LR
Sbjct: 79  KFYEPKTIGDHFAYYTVIGLKKFSEIMFTNKHINFAIVLESIASVPGLCGGVILHLRALR 138

Query: 175 KFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPK 234
             + S  WIK L++EAENER+HLM  +EL K   +ER+LV   Q + +  +F+ Y++SPK
Sbjct: 139 TME-SCSWIKTLMDEAENERIHLMVFIELTKATLFERILVTMAQFIVWFLYFIGYIISPK 197

Query: 235 LAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRAD 294
             HR+V YLE EA+ +YT ++KDID G IENVPA  +AI+YW L  DATL+D+I VIR D
Sbjct: 198 TMHRIVSYLEYEAVKTYTNFIKDIDLGLIENVPASKLAIEYWGLDNDATLRDMILVIRQD 257

Query: 295 EAHHRDVNHFASDIQFQGKELRDAPAPL 322
           E  H  VNH     Q   K L++   P+
Sbjct: 258 EVDHNIVNH-----QISKKILKNNNDPV 280


>gi|424863271|ref|ZP_18287184.1| alternative oxidase 1c [SAR86 cluster bacterium SAR86A]
 gi|400757892|gb|EJP72103.1| alternative oxidase 1c [SAR86 cluster bacterium SAR86A]
          Length = 200

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 89/185 (48%), Positives = 124/185 (67%), Gaps = 1/185 (0%)

Query: 124 DKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHS-GGW 182
           D  A    K  R   D FF +RYG RA++LETVA VPGMV G+ +H KSLRK +   G  
Sbjct: 14  DAFALSMTKFFRFIADTFFAKRYGHRAVVLETVAGVPGMVAGVWMHFKSLRKMKVGYGEQ 73

Query: 183 IKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGY 242
           I+ +L EAENERMHLM  +E+ KP ++ER +VL  Q +F   +  +Y+   + AHR++GY
Sbjct: 74  IREMLAEAENERMHLMFFIEIAKPNYFERFIVLFSQMIFGLFYLFMYVFFTRTAHRMIGY 133

Query: 243 LEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVN 302
            E+EA+ SYTEYL+ ++SG +EN+PAP +AI Y+ +  D+ L D+I  +RADE HH + N
Sbjct: 134 FEDEAVKSYTEYLEMVESGKVENIPAPKLAISYYGIGSDSKLSDLIRCVRADEEHHSETN 193

Query: 303 HFASD 307
           H  +D
Sbjct: 194 HNYAD 198


>gi|258574597|ref|XP_002541480.1| alternative oxidase [Uncinocarpus reesii 1704]
 gi|237901746|gb|EEP76147.1| alternative oxidase [Uncinocarpus reesii 1704]
          Length = 360

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 90/170 (52%), Positives = 127/170 (74%), Gaps = 4/170 (2%)

Query: 143 QRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVE 202
           +R++  R + LETVAAVPGMVGGML H++SLR+ +   GWI+ LLEEA NERMHL+T ++
Sbjct: 152 ERKWIIRFIFLETVAAVPGMVGGMLRHMRSLRRMKRDLGWIETLLEEAYNERMHLLTFLK 211

Query: 203 LVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGS 262
           L +P W+ R +VL  QGVFFNAFF+ YLLSP+  HR VGYLEEEA+ +YT  + D++SG 
Sbjct: 212 LAEPGWFMRFMVLGAQGVFFNAFFISYLLSPRTCHRFVGYLEEEAVLTYTHAINDLESGK 271

Query: 263 I---ENVPAPAIAIDYWRLPKD-ATLKDVITVIRADEAHHRDVNHFASDI 308
           +   +++ AP IA+ YW++P+    + D++  IRADEA HR+VNH  +++
Sbjct: 272 LPRWQDMKAPDIAVTYWKMPEGHQKILDLLYYIRADEAKHREVNHTLANL 321


>gi|412992248|emb|CCO19961.1| alternative oxidase [Bathycoccus prasinos]
          Length = 408

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 91/165 (55%), Positives = 114/165 (69%), Gaps = 5/165 (3%)

Query: 149 RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKW 208
           R + LETVA +PGMV GML H+ SLR  +H  GWI  LLEEAENERMHLMT + + +P  
Sbjct: 203 RFIFLETVAGIPGMVAGMLRHMNSLRLLRHDNGWIHTLLEEAENERMHLMTFLNMKQPSI 262

Query: 209 YERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIE---- 264
           + R  VL  QGVFFNAFF  YL+SP+  HR VGYLEEEA+ +YT  L DIDSG  +    
Sbjct: 263 FFRAGVLAAQGVFFNAFFFSYLISPRTCHRFVGYLEEEAVRTYTHALNDIDSGGTDARQW 322

Query: 265 -NVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDI 308
               AP +AI+YW++ +DAT++DV+  +RADEA H  VNH  S +
Sbjct: 323 AKERAPKLAIEYWKMDEDATIRDVLLAVRADEASHAHVNHTFSSM 367


>gi|340960109|gb|EGS21290.1| hypothetical protein CTHT_0031430 [Chaetomium thermophilum var.
           thermophilum DSM 1495]
          Length = 221

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 95/196 (48%), Positives = 125/196 (63%), Gaps = 18/196 (9%)

Query: 148 CRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPK 207
            R + LE++A VPGMV GML HL SLR+ +   GWI+ LLEE+ NERMHL+T + + +P 
Sbjct: 20  VRLIFLESIAGVPGMVAGMLRHLSSLRRMKRDNGWIETLLEESYNERMHLLTFMRMAQPG 79

Query: 208 WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---- 263
           W+ + +++  QGVFFNA F+ YL+SPK+ HR VGYLEEEA+H+YT  L +I+ G +    
Sbjct: 80  WFMKTMIILSQGVFFNALFLTYLISPKITHRFVGYLEEEAVHTYTRLLGEIERGDLPKWS 139

Query: 264 -ENVPAPAIAIDYWRLPKDA-TLKDVITVIRADEAHHRDVNH------------FASDIQ 309
             N P P IAI+YWRLP+   T+KD+I  IRADEA HR VNH            F S+ +
Sbjct: 140 DPNFPVPQIAIEYWRLPEGKRTMKDLIMYIRADEAVHRGVNHTLSGLKLDDPNPFVSEFK 199

Query: 310 FQGKELRDAPAPLGYH 325
             GK       P GY 
Sbjct: 200 AAGKRPNPVLKPTGYE 215


>gi|408397324|gb|EKJ76470.1| hypothetical protein FPSE_03380 [Fusarium pseudograminearum CS3096]
          Length = 353

 Score =  191 bits (485), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 101/246 (41%), Positives = 147/246 (59%), Gaps = 35/246 (14%)

Query: 94  WPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDL------------- 140
           WP   +    TY+  ++++   H  P T  DK A++ V++ R   D              
Sbjct: 80  WPHEGY----TYKEMMAVE-PAHREPKTIGDKTAWKIVRVARYCMDKATGMDRDQKSDKS 134

Query: 141 -----------FFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEE 189
                        + ++  R + LE+VA VPGMVGGML HL SLR+ +   GWI+ LLEE
Sbjct: 135 KPTTSIVAQKPLTEAQWLIRFIFLESVAGVPGMVGGMLRHLGSLRRMKRDNGWIETLLEE 194

Query: 190 AENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIH 249
           + NERMHL+T +++ +P W+ +M+++  QGVFFN+ FV YL+SPK+ HR VGYLEEEA+H
Sbjct: 195 SYNERMHLLTFMKMCEPGWFMKMMIIGAQGVFFNSLFVSYLISPKIVHRFVGYLEEEAVH 254

Query: 250 SYTEYLKDIDSGSI-----ENVPAPAIAIDYWRLPKD-ATLKDVITVIRADEAHHRDVNH 303
           +YT  +K+I+ G++          P IAI YW++PK+  T+KD+I  IRADEA HR VNH
Sbjct: 255 TYTRCIKEIEDGNLPKWSDPKFEIPDIAIQYWKMPKEHRTMKDLILYIRADEATHRGVNH 314

Query: 304 FASDIQ 309
              ++ 
Sbjct: 315 TLGNLN 320


>gi|409040019|gb|EKM49507.1| hypothetical protein PHACADRAFT_131107 [Phanerochaete carnosa
           HHB-10118-sp]
          Length = 379

 Score =  191 bits (485), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 90/167 (53%), Positives = 119/167 (71%), Gaps = 3/167 (1%)

Query: 149 RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKW 208
           R + LET+A VPGMV  +L HL+SLR  +   GWI  LLEEAENERMHLMT + + KP  
Sbjct: 173 RILFLETIAGVPGMVAAVLRHLRSLRLMRRDAGWIHTLLEEAENERMHLMTFMTIRKPSI 232

Query: 209 YERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---EN 265
           + R LVL  QGVF+NAFF+ YL+SP++ HR V YLEEEA+H+YT  + D+++G I   EN
Sbjct: 233 FFRALVLGAQGVFYNAFFLSYLISPRICHRFVAYLEEEAVHTYTRCIADLENGRIPEWEN 292

Query: 266 VPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQG 312
            PAP IA DYWRL  DA + DV+  +R+DE+ HR VNH  +++ ++ 
Sbjct: 293 FPAPEIAKDYWRLRPDAKMVDVLYAVRSDESTHRFVNHSLANLDYKS 339


>gi|348682022|gb|EGZ21838.1| hypothetical protein PHYSODRAFT_488439 [Phytophthora sojae]
          Length = 305

 Score =  191 bits (485), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 107/232 (46%), Positives = 140/232 (60%), Gaps = 15/232 (6%)

Query: 96  WNCFMPWETYRADLSIDL-KKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRR--------- 145
           W   +P   Y  +   D+ + HH P    + VA   VK LR+  DL    R         
Sbjct: 66  WKNPIPHPVYNLEAIDDIPQTHHQPRKIHEYVALLGVKTLRLGFDLLSGYRGPGAAMTVQ 125

Query: 146 -YGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELV 204
            +  R ++LETVA VPGMV GM  HL+SLR  +   GWI  LLEEAENERMHL+  + + 
Sbjct: 126 DWLNRCLLLETVAGVPGMVVGMAHHLRSLRSLKRDSGWIHTLLEEAENERMHLLIFMNMK 185

Query: 205 KPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIE 264
           +P W  RM+VL  QGVFF AF++ YL+SPK  HR VG+LEEEA+ +YT  L+D++ G ++
Sbjct: 186 QPGWGFRMMVLAAQGVFFPAFYLAYLVSPKTCHRFVGFLEEEAVKTYTNLLEDMEHGHLD 245

Query: 265 ---NVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNH-FASDIQFQG 312
                 AP I   Y+ LP+DA + D+I  IRADEA+HRDVNH FA   Q +G
Sbjct: 246 EWCTTTAPLIGRSYYNLPEDAKVYDMIKCIRADEANHRDVNHTFAGLDQKRG 297


>gi|440633254|gb|ELR03173.1| hypothetical protein GMDG_05999 [Geomyces destructans 20631-21]
          Length = 388

 Score =  191 bits (485), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 89/171 (52%), Positives = 126/171 (73%), Gaps = 4/171 (2%)

Query: 143 QRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVE 202
           +R++  R + LE+VA VPGMV GML HL SLR+ Q   GWI+ LLEEA NERMHL+T ++
Sbjct: 178 ERKWLIRFLFLESVAGVPGMVAGMLRHLSSLRRMQRDNGWIETLLEEAYNERMHLLTFLK 237

Query: 203 LVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGS 262
           + +P W+ R++ L  QGVFFN+ FV YL+SP+ AHR VGYLEEEA+ +Y+  L D+++G 
Sbjct: 238 MAEPGWFMRLMCLGAQGVFFNSMFVAYLISPRTAHRFVGYLEEEAVLTYSLVLADLEAGK 297

Query: 263 I---ENVPAPAIAIDYWRLPKDA-TLKDVITVIRADEAHHRDVNHFASDIQ 309
           +   E + AP IAI+YW++P+   T+KD+I  +RADEA HR+VNH   +++
Sbjct: 298 LPKWEGLQAPDIAIEYWKMPEGKRTVKDLILYVRADEAKHREVNHTLGNLK 348


>gi|46108920|ref|XP_381518.1| hypothetical protein FG01342.1 [Gibberella zeae PH-1]
          Length = 476

 Score =  191 bits (485), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 101/240 (42%), Positives = 144/240 (60%), Gaps = 35/240 (14%)

Query: 94  WPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDL------------- 140
           WP   +    TY   ++++   H  P T  DK A++ V++ R   D              
Sbjct: 80  WPHEGY----TYEEMMAVE-PAHREPKTIGDKTAWKIVRVARYCMDKATGMDRDQKSDKS 134

Query: 141 -----------FFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEE 189
                        + ++  R + LE+VA VPGMVGGML HL SLR+ +   GWI+ LLEE
Sbjct: 135 KPTTSIVAQKPLTEAQWLIRFIFLESVAGVPGMVGGMLRHLGSLRRMKRDNGWIETLLEE 194

Query: 190 AENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIH 249
           + NERMHL+T +++ +P W+ +M+++  QGVFFN+ FV YL+SPK+ HR VGYLEEEA+H
Sbjct: 195 SYNERMHLLTFMKMCEPGWFMKMMIIGAQGVFFNSLFVSYLISPKIVHRFVGYLEEEAVH 254

Query: 250 SYTEYLKDIDSGSI-----ENVPAPAIAIDYWRLPKD-ATLKDVITVIRADEAHHRDVNH 303
           +YT  +K+I+ G++          P IAI YW++PK+  T+KD+I  IRADEA HR VNH
Sbjct: 255 TYTRCIKEIEDGNLPKWSDPKFEIPDIAIQYWKMPKEHRTMKDLILYIRADEATHRGVNH 314


>gi|453084800|gb|EMF12844.1| mitochondrial alternative oxidase [Mycosphaerella populorum SO2202]
          Length = 353

 Score =  191 bits (484), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 103/253 (40%), Positives = 153/253 (60%), Gaps = 23/253 (9%)

Query: 74  VPSSYWGISRPK----ITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYR 129
            P + W  + P       R+    WP     P  TY    S+ + +     T+ D++A  
Sbjct: 64  TPRTQWKETFPAPDAPTIRKTPPAWP----HPIYTYDQMTSVQVAQREC-KTWSDRIALG 118

Query: 130 TVKLLRIPTDL----------FFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHS 179
            V+ LR   D+            +R+Y  R + LE+VA VPGM  GML HL S+R+ +  
Sbjct: 119 FVRTLRWGLDVASGYRKGSGQMSERQYMIRNIFLESVAGVPGMAAGMLRHLHSMRRMKRD 178

Query: 180 GGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRV 239
            GWI++LLEE+ NERMHL+T +++ +P W+ +++VL  QGVFFNAFFV YL+SPK  HR 
Sbjct: 179 NGWIESLLEESYNERMHLLTFLKMAEPGWFMKIMVLGAQGVFFNAFFVSYLISPKTCHRF 238

Query: 240 VGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAIDYWRLPKD-ATLKDVITVIRADE 295
           VG+LEEEA+ +YT  ++D+D+G +   E + AP IA+ YW +P D  T++D++  IRADE
Sbjct: 239 VGHLEEEAVLTYTREIQDLDAGHLPKWEKMVAPDIAVKYWNMPADRRTMRDLLLYIRADE 298

Query: 296 AHHRDVNHFASDI 308
           + HR+VNH   ++
Sbjct: 299 SKHREVNHTLGNL 311


>gi|407924740|gb|EKG17769.1| Alternative oxidase [Macrophomina phaseolina MS6]
          Length = 350

 Score =  191 bits (484), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 96/211 (45%), Positives = 138/211 (65%), Gaps = 18/211 (8%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDL--------------FFQRRYGCRAMMLETVAAVPG 161
           H    T+ DK A   V++LR   DL                +R+Y  R + LE+VA VPG
Sbjct: 101 HREAKTWSDKFALMMVRVLRWGLDLASGYKHAKPGEPFQMSERKYLQRNVFLESVAGVPG 160

Query: 162 MVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVF 221
           MV  +L HL S+R+ +   GWI+ LLEE+ NERMHL+T +++ +P W+ R++VL  QGVF
Sbjct: 161 MVAAVLRHLHSMRRMKRDNGWIETLLEESYNERMHLLTFLKMTEPGWFMRLMVLGAQGVF 220

Query: 222 FNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAIDYWRL 278
           FNA F  YL+SP+  HR VGYLEEEA+ +YT  ++D+D+G +   E + AP IAIDYW++
Sbjct: 221 FNAMFFSYLVSPRTCHRFVGYLEEEAVLTYTREIEDLDAGRLPMWEKMQAPDIAIDYWKM 280

Query: 279 PK-DATLKDVITVIRADEAHHRDVNHFASDI 308
           P+ + T++D++  IRADEA HR+VNH   ++
Sbjct: 281 PEGNRTMRDLLLYIRADEAKHREVNHTLGNL 311


>gi|295673346|ref|XP_002797219.1| alternative oxidase [Paracoccidioides sp. 'lutzii' Pb01]
 gi|226282591|gb|EEH38157.1| alternative oxidase [Paracoccidioides sp. 'lutzii' Pb01]
          Length = 352

 Score =  191 bits (484), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 97/215 (45%), Positives = 139/215 (64%), Gaps = 21/215 (9%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDL-----------------FFQRRYGCRAMMLETVAA 158
           H    T+ D VA  TV++LR  TDL                   ++++  R + LETVA 
Sbjct: 100 HRNAETWSDWVALGTVRMLRWATDLATGYKHPGKSDKNERFVMTEKKWIIRFIFLETVAG 159

Query: 159 VPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQ 218
           VPGMVGGML HL+SLR+ +   GWI+ LLEEA NERMHL++ ++L +P W  R++VL  Q
Sbjct: 160 VPGMVGGMLRHLRSLRRMKRDHGWIETLLEEAYNERMHLLSFLKLAEPGWCMRLMVLGAQ 219

Query: 219 GVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAIDY 275
           GVFFN FF+ YL+SP+  HR VGYLEEEA+ +YT  + D+++G +    N  AP IA+ Y
Sbjct: 220 GVFFNTFFIAYLISPRTCHRFVGYLEEEAVMTYTHAINDLEAGKLPEWANKEAPDIAVSY 279

Query: 276 WRLPKDA-TLKDVITVIRADEAHHRDVNHFASDIQ 309
           W +P++  T+ D++  +RADEA H +VNH  ++++
Sbjct: 280 WHMPENKRTILDLLYYVRADEAKHCEVNHTLANLK 314


>gi|260268365|dbj|BAI44020.1| alternative oxidase [Microdochium nivale]
          Length = 355

 Score =  191 bits (484), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 104/233 (44%), Positives = 147/233 (63%), Gaps = 27/233 (11%)

Query: 108 DLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGML 167
           D S  LK   VP   LD    +TV + RI      + ++  R + LE++A VPGMV GML
Sbjct: 122 DFSTGLKD--VPR--LDPATGKTVMVPRI----LNESQWLIRFIFLESIAGVPGMVAGML 173

Query: 168 LHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFV 227
            HL SLRK +   GWI+ LLEE+ NERMHLM  + L +P W+ + ++L  QG++FNA F+
Sbjct: 174 RHLHSLRKLKRDNGWIETLLEESYNERMHLMVFMRLCEPGWFMKTMILGAQGIYFNALFL 233

Query: 228 LYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIE-----NVPAPAIAIDYWRLPKD- 281
            YL+SPK+ HR VGYLEEEA+H+YT  ++ I++G +E     N  AP IAI YWR+P+  
Sbjct: 234 SYLISPKITHRFVGYLEEEAVHTYTTAIEQIEAGHLEKWSSPNFQAPDIAISYWRMPEGR 293

Query: 282 ATLKDVITVIRADEAHHRDVNHFASDI-----------QFQGKELRDAPAPLG 323
            T++D++  IRADEA HR VNH  S++           +++G+  R+AP P+ 
Sbjct: 294 RTMRDLLLYIRADEACHRGVNHTLSNLNADDDPNPFVSEYKGE--REAPKPIA 344


>gi|116196868|ref|XP_001224246.1| hypothetical protein CHGG_05032 [Chaetomium globosum CBS 148.51]
 gi|88180945|gb|EAQ88413.1| hypothetical protein CHGG_05032 [Chaetomium globosum CBS 148.51]
          Length = 368

 Score =  191 bits (484), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 100/224 (44%), Positives = 139/224 (62%), Gaps = 30/224 (13%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDL------------------------FFQRRYGCRAM 151
           H  P T  D VA++ V+L R  TD+                          + ++  R +
Sbjct: 108 HRSPETVGDWVAWKLVRLARWATDIATGIGREQQVDMKNPTTAVAAEKPLTEAQWLVRVI 167

Query: 152 MLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYER 211
            LE++A VPGMVGGML HL SLR+ +   GWI+ LLEE+ NERMHLMT++++ +  W+ +
Sbjct: 168 FLESIAGVPGMVGGMLRHLHSLRRLKRDNGWIETLLEESFNERMHLMTLMKMAEVGWFMK 227

Query: 212 MLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPA- 270
            ++L  QGVFFNA F+ YL+SPK+ HR VGYLEEEA+H+YT  L++I+ G +     PA 
Sbjct: 228 TMILGAQGVFFNAMFLSYLVSPKITHRFVGYLEEEAVHTYTRLLREIEQGDLPKWSDPAF 287

Query: 271 ----IAIDYWRLPKDA-TLKDVITVIRADEAHHRDVNHFASDIQ 309
               IAI YWR+P+   T+KD+I  IRADEA HR VNH  S+++
Sbjct: 288 QIPEIAITYWRMPEGKRTMKDLILYIRADEAVHRGVNHTLSNLK 331


>gi|403337618|gb|EJY68031.1| Alternative oxidase isoform B [Oxytricha trifallax]
          Length = 278

 Score =  190 bits (483), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 93/203 (45%), Positives = 133/203 (65%), Gaps = 11/203 (5%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDL--------FFQRRYGCRAMMLETVAAVPGMVGGML 167
           H  P  F DK A   ++ +R   D+           +++  R + LET+A VPGMVGGM 
Sbjct: 42  HRKPELFRDKFALNLIRFMRTSFDIATGYNEKQMTTQKWLNRVIFLETIAGVPGMVGGMA 101

Query: 168 LHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFV 227
            HL+SLR  +   GWI +LLEEAENER HL   ++L +P    ++++   QG+F+N +F+
Sbjct: 102 RHLQSLRSLKPDHGWIHSLLEEAENERTHLFIFLKLKQPTALFKLMIAAAQGIFYNLYFI 161

Query: 228 LYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAIDYWRLPKDATL 284
            YLL+PK  HR VGYLEEEA+H+YT  LK ID+GS+     +PAP +A +Y++L ++A L
Sbjct: 162 SYLLAPKYCHRFVGYLEEEAVHTYTVLLKQIDNGSLPEWAEMPAPQMAREYYKLSENAKL 221

Query: 285 KDVITVIRADEAHHRDVNHFASD 307
           +DVI  IRADE+ HR+VNH+ +D
Sbjct: 222 RDVILSIRADESIHREVNHYFTD 244


>gi|345565383|gb|EGX48333.1| hypothetical protein AOL_s00080g303 [Arthrobotrys oligospora ATCC
           24927]
          Length = 360

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 99/248 (39%), Positives = 145/248 (58%), Gaps = 32/248 (12%)

Query: 88  REDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDL------- 140
           RE    WP   +   E   AD+ I    H     F D++A   V+ LR   D+       
Sbjct: 77  RETKQSWPHPIYN--EKQMADIEI---AHRKARNFSDRIAINAVRFLRGMFDIATGYKHD 131

Query: 141 -----------------FFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWI 183
                              ++++  R + LE++A VPG V G L HLKS+R  +   GWI
Sbjct: 132 PKIASGEKSPKEETQFAMTEKKWMVRFIFLESIAGVPGFVAGTLRHLKSIRSLRRDNGWI 191

Query: 184 KALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYL 243
           + LLEE  NERMHL+T ++L +P  + R++++  QGVF+NAFF+ YLLSP+  HR VGYL
Sbjct: 192 ETLLEEGYNERMHLLTFLKLHQPGLFMRLMIIGAQGVFYNAFFLSYLLSPRTCHRFVGYL 251

Query: 244 EEEAIHSYTEYLKDIDSGSI---ENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRD 300
           EEEA+ +YT  + DID+G +   EN+ AP IA+DYW++   A+++D++  IRADEA HR+
Sbjct: 252 EEEAVITYTRAISDIDAGKLPGFENMKAPQIAVDYWKMNPGASIRDMLLYIRADEAKHRE 311

Query: 301 VNHFASDI 308
           VNH  +++
Sbjct: 312 VNHTLANL 319


>gi|340373435|ref|XP_003385247.1| PREDICTED: alternative oxidase, mitochondrial-like [Amphimedon
           queenslandica]
          Length = 308

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 98/208 (47%), Positives = 130/208 (62%), Gaps = 15/208 (7%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDLFF------------QRRYGCRAMMLETVAAVPGMV 163
           H  P+ F+DK AY +V+ LR   D+F             ++++  R + LETVA VPGM+
Sbjct: 89  HVKPSLFVDKAAYASVQTLRFFFDVFSGYYIGKFRGTLNEKKWLTRIIFLETVAGVPGMI 148

Query: 164 GGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFN 223
             ML HL+SLR  Q   GWI  LLEEAENERMHL+T + L KP +  R  V+  QG+F  
Sbjct: 149 AAMLRHLRSLRYLQRDHGWIHTLLEEAENERMHLLTALVLRKPGFLFRFAVIGAQGIFVT 208

Query: 224 AFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIE---NVPAPAIAIDYWRLPK 280
            F   Y++SPK  HR VGYLEEEA+ +YT  L+ ID G ++      AP+I+  YW+LP+
Sbjct: 209 LFSAAYIISPKFCHRFVGYLEEEAVKTYTHCLECIDRGDLKVWAKTAAPSISQKYWQLPE 268

Query: 281 DATLKDVITVIRADEAHHRDVNHFASDI 308
            A ++DVI  IRADEAHH +VNH  S +
Sbjct: 269 GAMMRDVILAIRADEAHHCEVNHTLSSM 296


>gi|443722305|gb|ELU11227.1| hypothetical protein CAPTEDRAFT_227551 [Capitella teleta]
          Length = 337

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 101/214 (47%), Positives = 136/214 (63%), Gaps = 15/214 (7%)

Query: 108 DLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLF--FQRR-------YGCRAMMLETVAA 158
           D++I  KK   P  F+D  AY  V+  R   D    + R        +  R   LETVA 
Sbjct: 116 DVNITHKK---PVGFIDNFAYLGVQTTRKVFDFLTGYNRTPSPSNAVWVNRLCFLETVAG 172

Query: 159 VPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQ 218
           VPGMV  M+ HL+SLR+ +   GWI  LLEEAENERMHLM  +++ +P    R+ V++ Q
Sbjct: 173 VPGMVAAMVRHLESLRRMRRDHGWIHTLLEEAENERMHLMVFLQIKQPSLLFRLSVMSTQ 232

Query: 219 GVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIEN---VPAPAIAIDY 275
            +F + F + YLLSPKL HR VGYLEEEA+ +YT+ L+ I+ G +++    PA  IAI+Y
Sbjct: 233 AIFVSGFSIAYLLSPKLCHRFVGYLEEEAVITYTKLLQQIEDGGMQDWKTKPASQIAINY 292

Query: 276 WRLPKDATLKDVITVIRADEAHHRDVNHFASDIQ 309
           WRL ++AT+KDV+  IRADEAHHR VNH  S ++
Sbjct: 293 WRLSQEATMKDVVLAIRADEAHHRVVNHTLSSMR 326


>gi|326427287|gb|EGD72857.1| alternative oxidase [Salpingoeca sp. ATCC 50818]
          Length = 319

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 101/210 (48%), Positives = 135/210 (64%), Gaps = 12/210 (5%)

Query: 112 DLKKHHV-PTTFLDKVAYRTVKLLRIPTDLFFQRRYGC--------RAMMLETVAAVPGM 162
           D+K  H+ P    D+VAY  ++++R   D+F    +G         R + LETVA +PGM
Sbjct: 99  DVKVTHIDPKDRHDRVAYYLIRMIRRGFDIFSGYAFGPINEHKFLRRVIFLETVAGIPGM 158

Query: 163 VGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFF 222
           V G L HLKSLR  +   GWI  LLEEAENERMHL+T ++L +P    R +VL  QGVF+
Sbjct: 159 VAGSLRHLKSLRLMKRDHGWIHTLLEEAENERMHLLTFMQLREPGLLFRGMVLAAQGVFW 218

Query: 223 NAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAIDYWRLP 279
           N +F+ YL SP+  HR VGYLEEEA+ +YT+ +K +D G +    N PAP IA  YW L 
Sbjct: 219 NLYFLGYLASPRTCHRFVGYLEEEAVKTYTDAIKALDDGLMPTWTNKPAPDIAKTYWGLA 278

Query: 280 KDATLKDVITVIRADEAHHRDVNHFASDIQ 309
            DA ++DV+  +RADEA+HRDVNH  S ++
Sbjct: 279 DDALMRDVLLAVRADEANHRDVNHTLSTLK 308


>gi|24061751|gb|AAN39883.1| mitochondrial alternative oxidase [Emericella nidulans]
          Length = 354

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 98/216 (45%), Positives = 140/216 (64%), Gaps = 22/216 (10%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDLF---------------FQ---RRYGCRAMMLETVA 157
           H     + D VA  +V+LLR   DL                FQ   + +  R + LE+VA
Sbjct: 101 HREAKNWSDWVALGSVRLLRWGMDLVTGYKHPAPGQEDIKKFQMTEKEWLRRFVFLESVA 160

Query: 158 AVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTV 217
            VPGMVGGML HL+SLR+ +   GWI+ LLEEA NER+ L+T +++  P W+ R++VL  
Sbjct: 161 GVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERLFLLTFLKMAGPGWFMRLMVLGA 220

Query: 218 QGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAID 274
           QGVFFN FF+ YL+SP+  HR VGYLEEEA+ +YT  +KD++SG +   E + AP IA+ 
Sbjct: 221 QGVFFNGFFLSYLISPRTCHRFVGYLEEEAVLTYTRAIKDLESGRLPHWEKLEAPEIAVK 280

Query: 275 YWRLPK-DATLKDVITVIRADEAHHRDVNHFASDIQ 309
           YW++P+ + T+KD++  +RADEA HR+VNH   +++
Sbjct: 281 YWKMPEGNRTMKDLLLYVRADEAKHREVNHTLGNLK 316


>gi|336260284|ref|XP_003344938.1| hypothetical protein SMAC_08419 [Sordaria macrospora k-hell]
 gi|380087699|emb|CCC14107.1| unnamed protein product [Sordaria macrospora k-hell]
          Length = 375

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 97/221 (43%), Positives = 135/221 (61%), Gaps = 30/221 (13%)

Query: 113 LKKHHVPTTFLDKVAYRTVKLLRIPTDL------------------------FFQRRYGC 148
           +  H  P TF D +A++ V+  R   DL                          +R++  
Sbjct: 106 VPSHREPRTFGDWIAWKIVRTCRFWMDLVTGMRPEQQVDSKNPTTALAASKPLTERQWLV 165

Query: 149 RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKW 208
           R + LE++A VPGMV G L HL+S+R+FQ   GWIK+LLEE+ NERMHL+T +E+ KP W
Sbjct: 166 RFIFLESIAGVPGMVAGSLRHLQSIRRFQPDQGWIKSLLEESYNERMHLLTFLEMYKPGW 225

Query: 209 YERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIE---- 264
           + R++VL  QGVF+NA F+ YL SPK+ HR VGYLEEEA+H+YT  L ++D G ++    
Sbjct: 226 FMRLVVLGAQGVFYNAMFISYLFSPKICHRFVGYLEEEAVHTYTRCLLELDHGCLKKWSD 285

Query: 265 -NVPAPAIAIDYWRLPKD-ATLKDVITVIRADEAHHRDVNH 303
                P +A+ YW +P+   T+KD+I  +RADEA HR VNH
Sbjct: 286 PKFRIPDLAVRYWNMPEGHRTMKDLILYVRADEASHRGVNH 326


>gi|283444935|gb|ADB20396.1| mitochondrial alternative oxidase 1b [Hypericum perforatum]
 gi|283444937|gb|ADB20397.1| mitochondrial alternative oxidase 1b [Hypericum perforatum]
          Length = 106

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 86/106 (81%), Positives = 95/106 (89%)

Query: 94  WPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMML 153
           W W CF PWE Y+ ++SIDLKKHH PTTFLDK+A+ TVK LR PTD+FFQRRYGCRAMML
Sbjct: 1   WTWICFRPWEAYQPNMSIDLKKHHAPTTFLDKLAFWTVKSLRWPTDIFFQRRYGCRAMML 60

Query: 154 ETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMT 199
           ETVAAVPGMVGGMLLH KSLR+F+HSGGWIK LL+EAENERMHLMT
Sbjct: 61  ETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKTLLDEAENERMHLMT 106


>gi|443697354|gb|ELT97860.1| hypothetical protein CAPTEDRAFT_122794 [Capitella teleta]
          Length = 305

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 102/214 (47%), Positives = 135/214 (63%), Gaps = 15/214 (7%)

Query: 108 DLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLF--FQRR-------YGCRAMMLETVAA 158
           D++I  KK   P  F+D  AY  V+  R   D    + R        +  R   LETVA 
Sbjct: 84  DVNITHKK---PVGFIDNFAYLGVQTTRKVFDFLTGYNRTPSPSNAVWVNRLCFLETVAG 140

Query: 159 VPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQ 218
           VPGMV  M+ HL+SLRK +   GWI  LLEEAENERMHLM  +++ +P    R+ V++ Q
Sbjct: 141 VPGMVAAMVRHLESLRKMRRDHGWIHTLLEEAENERMHLMVFLQIKQPSLLFRLSVMSTQ 200

Query: 219 GVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIE---NVPAPAIAIDY 275
            +F + F + YLLSPKL HR VGYLEEEA+ +YT+ L+ I+ G ++     PA  IAI+Y
Sbjct: 201 AIFVSGFSIAYLLSPKLCHRFVGYLEEEAVITYTKLLQQIEDGGMQEWKTKPASQIAINY 260

Query: 276 WRLPKDATLKDVITVIRADEAHHRDVNHFASDIQ 309
           WRL ++AT+KDV+  IRADEAHHR VNH  S ++
Sbjct: 261 WRLSQEATMKDVVLAIRADEAHHRVVNHTLSSMR 294


>gi|342890501|gb|EGU89319.1| hypothetical protein FOXB_00272 [Fusarium oxysporum Fo5176]
          Length = 353

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 88/161 (54%), Positives = 119/161 (73%), Gaps = 6/161 (3%)

Query: 149 RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKW 208
           R + LE+VA VPGMVGGML HL SLR+ +   GWI+ LLEE+ NERMHL+T +++ +P W
Sbjct: 154 RFIFLESVAGVPGMVGGMLRHLGSLRRMKRDNGWIETLLEESYNERMHLLTFMKMCEPGW 213

Query: 209 YERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI----- 263
           + +M+++  QGVFFN+ FV YL+SPK+ HR VGYLEEEA+H+YT  +K+I+ G++     
Sbjct: 214 FMKMMIIGAQGVFFNSLFVSYLISPKIVHRFVGYLEEEAVHTYTRCIKEIEDGNLPKWSD 273

Query: 264 ENVPAPAIAIDYWRLPKD-ATLKDVITVIRADEAHHRDVNH 303
                P IAI YW++PK+  T+KD+I  IRADEA HR VNH
Sbjct: 274 PKFQIPDIAIQYWKMPKEHRTMKDLILYIRADEATHRGVNH 314


>gi|38018226|gb|AAR08189.1| mitochondrial cyanide-resistant terminal oxidase [Penicillium
           chrysogenum]
          Length = 361

 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 90/190 (47%), Positives = 136/190 (71%), Gaps = 6/190 (3%)

Query: 126 VAYRTVKLLRIPTDLF--FQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWI 183
             YR  K  +   D+F   + ++  R + LE+VA VPGMVGGML HL+SLRK +   GWI
Sbjct: 125 TGYRHPKPGQELPDMFKMTEHKWMNRFIFLESVAGVPGMVGGMLRHLRSLRKMKRDNGWI 184

Query: 184 KALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYL 243
           + LLEEA NERMHL+T ++L +P W+ R++V+  QGVFFN FF+ YL+SP++ HR VGYL
Sbjct: 185 ETLLEEAFNERMHLLTFLKLAEPGWFMRLMVIGAQGVFFNGFFLSYLISPRICHRFVGYL 244

Query: 244 EEEAIHSYTEYLKDIDSGSI---ENVPAPAIAIDYWRLPK-DATLKDVITVIRADEAHHR 299
           EEEA+ +YT  ++++++G +   +++ AP IAI YW++P+    +KD++  +RADEA HR
Sbjct: 245 EEEAVITYTRAIEELEAGKLPQWDDLDAPEIAIKYWQMPEGQRKMKDLLMFVRADEAKHR 304

Query: 300 DVNHFASDIQ 309
           +VNH  ++++
Sbjct: 305 EVNHTLANLK 314


>gi|374619172|ref|ZP_09691706.1| alternative oxidase [gamma proteobacterium HIMB55]
 gi|374302399|gb|EHQ56583.1| alternative oxidase [gamma proteobacterium HIMB55]
          Length = 189

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 93/159 (58%), Positives = 116/159 (72%), Gaps = 1/159 (0%)

Query: 145 RYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHS-GGWIKALLEEAENERMHLMTMVEL 203
           RYG RA++LETVA VPGMV GM +HLKSLR+ +   G  I+ LL EAENERMHLM  VE+
Sbjct: 24  RYGHRAVVLETVAGVPGMVAGMWVHLKSLRQAKTGYGPMIRELLAEAENERMHLMFFVEI 83

Query: 204 VKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI 263
            KP W ER L+L  Q VF   + VLY++SPK AH+++ Y EEEA+ SYT YLK+I++G I
Sbjct: 84  AKPNWVERALILIAQLVFMAYYLVLYIVSPKTAHKMIHYFEEEAVRSYTSYLKEIETGKI 143

Query: 264 ENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVN 302
            +VPAP +AIDY+ LP DA L D+I  +RADE  H D N
Sbjct: 144 ADVPAPKLAIDYYDLPPDAKLSDMILKVRADEQVHADAN 182


>gi|449300077|gb|EMC96090.1| hypothetical protein BAUCODRAFT_148923 [Baudoinia compniacensis
           UAMH 10762]
          Length = 457

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 85/165 (51%), Positives = 121/165 (73%), Gaps = 4/165 (2%)

Query: 143 QRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVE 202
           +R++  R + LE+VA VPGMV GML HL S+R+ +   GWI+ LLEE+ NERMHL+T ++
Sbjct: 246 ERQWMIRFIFLESVAGVPGMVAGMLRHLHSMRRMKRDNGWIETLLEESYNERMHLLTFMK 305

Query: 203 LVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGS 262
           + +P W+ R++VL  QGVFFN  F+ YL+SPK  HR VGYLEEEA+++Y+  L DID+G 
Sbjct: 306 MAEPGWFLRLMVLGAQGVFFNGMFLFYLVSPKTCHRFVGYLEEEAVYTYSRVLSDIDAGK 365

Query: 263 I---ENVPAPAIAIDYWRLPKD-ATLKDVITVIRADEAHHRDVNH 303
           +     + AP IA+ YW +P+D  +++D+I  IRADE+ HR+VNH
Sbjct: 366 LPMFSQMQAPDIAVKYWNMPEDHRSMRDLILYIRADESKHREVNH 410


>gi|71609886|dbj|BAE16577.1| alternative oxidase [Trypanosoma congolense]
          Length = 323

 Score =  188 bits (477), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 99/213 (46%), Positives = 126/213 (59%), Gaps = 10/213 (4%)

Query: 107 ADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGC--------RAMMLETVAA 158
           AD+      H  P   +D +AYR V+  R   D F   R+G         R + LETVA 
Sbjct: 68  ADVENVAITHKKPNGLVDTLAYRGVRTCRWAFDTFSLYRFGSLTEGKVINRCLFLETVAG 127

Query: 159 VPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQ 218
           VPGMVGGML HLKSLR      GWI  LL EAENERMHLMT +EL +P +  R+ ++  Q
Sbjct: 128 VPGMVGGMLRHLKSLRYMTRDKGWINTLLVEAENERMHLMTFIELRQPGFTFRVSIIVTQ 187

Query: 219 GVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPA--PAIAIDYW 276
            + +      Y++SP+  HR VGYLEEEA+ +YT  L+ ID G +    +  P +A  YW
Sbjct: 188 AIMYLFLLTAYIISPRFVHRFVGYLEEEAVITYTSILRAIDEGRLRPTKSDVPEVARVYW 247

Query: 277 RLPKDATLKDVITVIRADEAHHRDVNHFASDIQ 309
            L KDAT +D+I VIRADEA HR VNH  +D+ 
Sbjct: 248 NLSKDATFRDLINVIRADEAEHRVVNHTFADMH 280


>gi|262348244|gb|ACY56340.1| alternative oxidase [Monascus ruber]
          Length = 350

 Score =  187 bits (476), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 98/228 (42%), Positives = 142/228 (62%), Gaps = 23/228 (10%)

Query: 105 YRADLSIDLKKHHVPT-TFLDKVAYRTVKLLRIPTD------------------LFFQRR 145
           Y  D   D++  H  T  + D VA   V+LLR   D                  +   ++
Sbjct: 85  YTYDQMRDVRVAHRSTKNWADWVALAAVRLLRWGMDTATGYRHPPKGQENVSKFVMTDKK 144

Query: 146 YGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVK 205
           +  R + LE+VA VPGMVGG L HL+SLR  +   GWI+ LLEEA NERMHL+T + + +
Sbjct: 145 WITRFIFLESVAGVPGMVGGTLRHLRSLRFLRRDNGWIETLLEEAYNERMHLLTFLNVAR 204

Query: 206 PKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI-- 263
           P  + R++VL  QGVF+N FF+ YL+SP++ HR VGYLEEEA+ +YT  + DI+ G +  
Sbjct: 205 PGLFMRLMVLGAQGVFYNGFFLSYLISPRICHRFVGYLEEEAVITYTRVISDIEEGRVPE 264

Query: 264 -ENVPAPAIAIDYWRLPK-DATLKDVITVIRADEAHHRDVNHFASDIQ 309
             N+PAP IA+ YW++P+ + T+KD++  +RADEA HR+VNH  +++ 
Sbjct: 265 WANMPAPEIAVQYWKMPEGNRTMKDLLLYVRADEAKHREVNHTLANLN 312


>gi|255932617|ref|XP_002557865.1| Pc12g10440 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211582484|emb|CAP80671.1| Pc12g10440 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 362

 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 84/165 (50%), Positives = 127/165 (76%), Gaps = 4/165 (2%)

Query: 149 RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKW 208
           R + LE++A VPGMVGGML HL+SLRK +   GWI+ LLEEA NERMHL+T ++L +P W
Sbjct: 151 RFVFLESIAGVPGMVGGMLRHLRSLRKMKRDNGWIETLLEEAFNERMHLLTFLKLAEPGW 210

Query: 209 YERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---EN 265
           + R++V+  QGVFFN FF+ YL+SP++ HR VGYLEEEA+ +YT  ++++++G++   ++
Sbjct: 211 FMRVMVIGAQGVFFNGFFLSYLISPRICHRFVGYLEEEAVITYTRAIEELEAGNLPEWKD 270

Query: 266 VPAPAIAIDYWRLPK-DATLKDVITVIRADEAHHRDVNHFASDIQ 309
           + AP IA+ YW++P+    +KD++  IRADEA HR+VNH  ++++
Sbjct: 271 LDAPEIAVKYWQMPEGQRKMKDLLLFIRADEAKHREVNHTLANLK 315


>gi|302921940|ref|XP_003053363.1| hypothetical protein NECHADRAFT_98640 [Nectria haematococca mpVI
           77-13-4]
 gi|256734304|gb|EEU47650.1| hypothetical protein NECHADRAFT_98640 [Nectria haematococca mpVI
           77-13-4]
          Length = 357

 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 95/194 (48%), Positives = 133/194 (68%), Gaps = 18/194 (9%)

Query: 149 RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKW 208
           R + LE++A VPGMVGGML HL SLR+ +   GWI+ LLEE+ NERMHL+T +++ +P W
Sbjct: 158 RFIFLESIAGVPGMVGGMLRHLGSLRRMKRDNGWIETLLEESYNERMHLLTFMKMCEPGW 217

Query: 209 YERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIE--NV 266
           + +M+++  QGVFFN+ FV YL+SPK+ HR VGYLEEEA+H+YT  +K+I+ G++   N 
Sbjct: 218 FMKMMIIGAQGVFFNSLFVSYLISPKIVHRFVGYLEEEAVHTYTRCIKEIEDGNLPKWND 277

Query: 267 PA---PAIAIDYWRLPKD-ATLKDVITVIRADEAHHRDVNHFASDI-----------QFQ 311
           P    P IA+ YW++PK+  T+KD+I  IRADEA HR VNH   ++           +F+
Sbjct: 278 PKFAIPDIAVQYWQMPKEHRTMKDLILYIRADEAVHRGVNHTLGNLNQSEDPNPFVSEFK 337

Query: 312 GKE-LRDAPAPLGY 324
            +E  R A  P GY
Sbjct: 338 DREPPRPALKPAGY 351


>gi|170090173|ref|XP_001876309.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164649569|gb|EDR13811.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 378

 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 94/183 (51%), Positives = 119/183 (65%), Gaps = 3/183 (1%)

Query: 130 TVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEE 189
           TV  LR    L   R +  R ++LE++A VPGMV   L HL SLR  +   GWI   LEE
Sbjct: 143 TVAQLRKAGYLLDDRAWLTRILVLESIAGVPGMVAATLRHLTSLRLMRRDSGWIHTCLEE 202

Query: 190 AENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIH 249
           AENERMHLMT + L KP    R +VL  QGVF+N FF  YL+SP++ HR VGYLEEEA+ 
Sbjct: 203 AENERMHLMTFMTLRKPSIILRAIVLAAQGVFYNLFFFSYLISPRICHRFVGYLEEEAVV 262

Query: 250 SYTEYLKDIDSGSI---ENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFAS 306
           +YT  + D+++G I    N PAP I+IDYWRLP DA L DV+  +R+DE  HR VNH  +
Sbjct: 263 TYTRCIADLEAGRIPEWSNKPAPEISIDYWRLPPDAKLLDVLYAVRSDETTHRFVNHSLA 322

Query: 307 DIQ 309
           ++ 
Sbjct: 323 NLN 325


>gi|134079505|emb|CAK46037.1| unnamed protein product [Aspergillus niger]
          Length = 310

 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 97/210 (46%), Positives = 133/210 (63%), Gaps = 22/210 (10%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDL------------------FFQRRYGCRAMMLETVA 157
           H       DK+A   V+LLR  TD                     +R++  R + LE+VA
Sbjct: 57  HREAKCLSDKIALGLVRLLRWCTDFVTGYRNPERNKEIADKFDMTERKWLIRFIFLESVA 116

Query: 158 AVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTV 217
            VPGMVGGML HLKS+R+ +   GWI++L++EA NERMHL+T ++L  P    R++VL  
Sbjct: 117 GVPGMVGGMLRHLKSIRRMKRDHGWIESLIDEAYNERMHLLTFLDLADPGIVMRLVVLAA 176

Query: 218 QGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAID 274
           QGVFFNAFFV YL+SPK  HR VGYLEEEA+ +YT  ++ + +G +   +N+ AP IAI 
Sbjct: 177 QGVFFNAFFVFYLVSPKTCHRFVGYLEEEAVITYTHAIRQLQAGKLPAWDNLSAPEIAIK 236

Query: 275 YWRLPKDAT-LKDVITVIRADEAHHRDVNH 303
           YWR+P+    + D++  +RADEA HR+VNH
Sbjct: 237 YWRMPEGKQRMVDLLLYVRADEAKHREVNH 266


>gi|389744708|gb|EIM85890.1| alternative oxidase [Stereum hirsutum FP-91666 SS1]
          Length = 331

 Score =  187 bits (474), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 98/222 (44%), Positives = 131/222 (59%), Gaps = 29/222 (13%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYG--------------------------CR 149
           H  PTT  D+ A R ++L R+  D+    R+                            R
Sbjct: 61  HREPTTLADRNAKRFMRLCRVGFDIVSGYRHKPIPPDANMSLEELRKKGYAMDEHAWLNR 120

Query: 150 AMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWY 209
            + LE++A VPGMV     HLKSLR  +   GWI  LLEEAENERMHLMT + L  P W+
Sbjct: 121 ILFLESIAGVPGMVAATCRHLKSLRLMRRDSGWIHTLLEEAENERMHLMTFMTLRNPGWF 180

Query: 210 ERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENV 266
            RML+L  QGVF+N FF  YL+SP++ HR VGYLEEEA+ +Y+  ++++++G +    N 
Sbjct: 181 FRMLILGAQGVFYNMFFFSYLISPRVCHRFVGYLEEEAVITYSRCIQEMEAGRLPLWSNK 240

Query: 267 PAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDI 308
           PAP IA DYWRL  DAT+ DVI  +R+DE  HR VNH  +++
Sbjct: 241 PAPEIAKDYWRLRPDATMLDVIYAVRSDETSHRFVNHSLANL 282


>gi|302847293|ref|XP_002955181.1| alternative oxidase [Volvox carteri f. nagariensis]
 gi|300259473|gb|EFJ43700.1| alternative oxidase [Volvox carteri f. nagariensis]
          Length = 219

 Score =  187 bits (474), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 90/161 (55%), Positives = 116/161 (72%), Gaps = 1/161 (0%)

Query: 149 RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKW 208
           R + LETVA VPGMV GML HLKSLR  +   GWI  LLEEAENERMHL+T +EL +P  
Sbjct: 43  RIIFLETVAGVPGMVAGMLRHLKSLRTMRRDHGWIHTLLEEAENERMHLITFLELRRPGP 102

Query: 209 YERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI-ENVP 267
             R  V+  QGVFFNA+F+ YLLSP+  H  +G+LEEEA+ +YT  L +ID+G + +  P
Sbjct: 103 LFRAAVIGAQGVFFNAYFLAYLLSPRTCHAFIGFLEEEAVKTYTHALAEIDAGRLWKGTP 162

Query: 268 APAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDI 308
           APAIA++YW LP+ AT++D++  +RADEA H  VNH  S +
Sbjct: 163 APAIAVEYWGLPRGATMRDLVLAVRADEACHAHVNHTFSKL 203


>gi|303312147|ref|XP_003066085.1| Alternative oxidase, mitochondrial precursor, putative
           [Coccidioides posadasii C735 delta SOWgp]
 gi|240105747|gb|EER23940.1| Alternative oxidase, mitochondrial precursor, putative
           [Coccidioides posadasii C735 delta SOWgp]
 gi|320040066|gb|EFW22000.1| alternative oxidase [Coccidioides posadasii str. Silveira]
          Length = 360

 Score =  187 bits (474), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 87/170 (51%), Positives = 128/170 (75%), Gaps = 4/170 (2%)

Query: 143 QRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVE 202
           +R++  R + LETVAAVPGMVGGML HL+SLR+ +   GWI+ LLEEA NERMHL++ ++
Sbjct: 152 ERKWIIRFIFLETVAAVPGMVGGMLRHLRSLRRMKRDLGWIETLLEEAYNERMHLLSFLK 211

Query: 203 LVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGS 262
           L +P W+ R++VL  QGVFFNAFF+ YL+SP+  HR VGYLEEEA+ +YT  + D+++G 
Sbjct: 212 LAEPGWFMRLMVLGAQGVFFNAFFLSYLVSPRTCHRFVGYLEEEAVLTYTHAINDLENGK 271

Query: 263 I---ENVPAPAIAIDYWRLPKD-ATLKDVITVIRADEAHHRDVNHFASDI 308
           +   +++ AP IA+ YW++P+    + D++  +RADEA HR+VNH  +++
Sbjct: 272 LPRWKDMNAPDIAVTYWKMPEGHRKILDLLYYVRADEAKHREVNHTLANL 321


>gi|350631533|gb|EHA19904.1| hypothetical protein ASPNIDRAFT_39327 [Aspergillus niger ATCC 1015]
          Length = 345

 Score =  186 bits (473), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 100/242 (41%), Positives = 146/242 (60%), Gaps = 26/242 (10%)

Query: 93  PWPWNCFMPWETYRADLSIDLKK----HHVPTTFLDKVAYRTVKLLRIPTDL-------- 140
           P+ + C +   T ++    +++     H       DK+A   V+LLR  TD         
Sbjct: 65  PFHFLCLLSSNTRKSYTEKEIRNTTVAHREAKCLSDKIALGLVRLLRWCTDFVTGYRNPE 124

Query: 141 ----------FFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEA 190
                       +R++  R + LE+VA VPGMVGGML HLKS+R+ +   GWI++L++EA
Sbjct: 125 RNKEIADKFDMTERKWLIRFIFLESVAGVPGMVGGMLRHLKSIRRMKRDHGWIESLIDEA 184

Query: 191 ENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHS 250
            NERMHL+T ++L  P    R++VL  QGVFFNAFFV YL+SPK  HR VGYLEEEA+ +
Sbjct: 185 YNERMHLLTFLDLADPGIVMRLVVLAAQGVFFNAFFVFYLVSPKTCHRFVGYLEEEAVIT 244

Query: 251 YTEYLKDIDSGSI---ENVPAPAIAIDYWRLPKDAT-LKDVITVIRADEAHHRDVNHFAS 306
           YT  ++ + +G +   +N+ AP IAI YWR+P+    + D++  +RADEA HR+VNH   
Sbjct: 245 YTHAIRQLQAGKLPAWDNLSAPEIAIKYWRMPEGKQRMVDLLLYVRADEAKHREVNHTLG 304

Query: 307 DI 308
           ++
Sbjct: 305 NL 306


>gi|332099427|gb|ABN09948.3| mitochondrial alternative oxidase [Moniliophthora perniciosa]
 gi|342349569|gb|AEL23664.1| mitochondrial alternative oxidase [Moniliophthora perniciosa]
          Length = 378

 Score =  186 bits (473), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 91/183 (49%), Positives = 123/183 (67%), Gaps = 3/183 (1%)

Query: 130 TVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEE 189
           T+  LR    L   + +  R + LE++A VPGMV   + HL SLR  +   GWI   LEE
Sbjct: 141 TLAELRKEGYLLDDKAWLSRILFLESIAGVPGMVAATIRHLTSLRLMRRDNGWIHTCLEE 200

Query: 190 AENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIH 249
           AENERMHLMT + L KP  + R ++L  QGVF+N FF+ Y++SP++ HR VGYLEEEA+ 
Sbjct: 201 AENERMHLMTFMTLRKPSIFFRAMILGAQGVFYNLFFLSYIISPRICHRFVGYLEEEAVL 260

Query: 250 SYTEYLKDIDSGSI---ENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFAS 306
           +YT+ +KDI++G +    ++PAP IAIDYWRLP DA L DVI  +R+DE  HR VNH  +
Sbjct: 261 TYTKCIKDIEAGYVPEWSDMPAPKIAIDYWRLPADAKLLDVIYAVRSDETTHRFVNHSLA 320

Query: 307 DIQ 309
           ++ 
Sbjct: 321 NLN 323


>gi|317033065|ref|XP_001394812.2| alternative oxidase [Aspergillus niger CBS 513.88]
          Length = 300

 Score =  186 bits (473), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 97/210 (46%), Positives = 133/210 (63%), Gaps = 22/210 (10%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDL------------------FFQRRYGCRAMMLETVA 157
           H       DK+A   V+LLR  TD                     +R++  R + LE+VA
Sbjct: 47  HREAKCLSDKIALGLVRLLRWCTDFVTGYRNPERNKEIADKFDMTERKWLIRFIFLESVA 106

Query: 158 AVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTV 217
            VPGMVGGML HLKS+R+ +   GWI++L++EA NERMHL+T ++L  P    R++VL  
Sbjct: 107 GVPGMVGGMLRHLKSIRRMKRDHGWIESLIDEAYNERMHLLTFLDLADPGIVMRLVVLAA 166

Query: 218 QGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAID 274
           QGVFFNAFFV YL+SPK  HR VGYLEEEA+ +YT  ++ + +G +   +N+ AP IAI 
Sbjct: 167 QGVFFNAFFVFYLVSPKTCHRFVGYLEEEAVITYTHAIRQLQAGKLPAWDNLSAPEIAIK 226

Query: 275 YWRLPKDAT-LKDVITVIRADEAHHRDVNH 303
           YWR+P+    + D++  +RADEA HR+VNH
Sbjct: 227 YWRMPEGKQRMVDLLLYVRADEAKHREVNH 256


>gi|119193348|ref|XP_001247280.1| alternative oxidase, mitochondrial precursor [Coccidioides immitis
           RS]
 gi|392863474|gb|EAS35773.2| alternative oxidase, mitochondrial [Coccidioides immitis RS]
          Length = 360

 Score =  186 bits (473), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 87/170 (51%), Positives = 128/170 (75%), Gaps = 4/170 (2%)

Query: 143 QRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVE 202
           +R++  R + LETVAAVPGMVGGML HL+SLR+ +   GWI+ LLEEA NERMHL++ ++
Sbjct: 152 ERKWIIRFIFLETVAAVPGMVGGMLRHLRSLRRMKRDLGWIETLLEEAYNERMHLLSFLK 211

Query: 203 LVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGS 262
           L +P W+ R++VL  QGVFFNAFF+ YL+SP+  HR VGYLEEEA+ +YT  + D+++G 
Sbjct: 212 LAEPGWFMRLMVLGAQGVFFNAFFLSYLVSPRTCHRFVGYLEEEAVLTYTHAINDLENGK 271

Query: 263 I---ENVPAPAIAIDYWRLPKD-ATLKDVITVIRADEAHHRDVNHFASDI 308
           +   +++ AP IA+ YW++P+    + D++  +RADEA HR+VNH  +++
Sbjct: 272 LPRWKDMNAPDIAVTYWKMPEGHRKILDLLYYVRADEAKHREVNHTLANL 321


>gi|71609884|dbj|BAE16576.1| alternative oxidase [Trypanosoma congolense]
          Length = 323

 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 99/213 (46%), Positives = 126/213 (59%), Gaps = 10/213 (4%)

Query: 107 ADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGC--------RAMMLETVAA 158
           AD+      H  P   +D +AYR V+  R   D F   R+G         R + LETVA 
Sbjct: 68  ADVENVAITHKKPNGLVDTLAYRGVRTCRWAFDTFSLYRFGNLTEGKVINRCLFLETVAG 127

Query: 159 VPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQ 218
           VPGMVGGML HLKSLR      GWI  LL EAENERMHLMT +EL +P +  R+ ++  Q
Sbjct: 128 VPGMVGGMLRHLKSLRYMTRDKGWINTLLIEAENERMHLMTFIELRQPGFAFRVSIIVTQ 187

Query: 219 GVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPA--PAIAIDYW 276
            + +      Y++SP+  HR VGYLEEEA+ +YT  L+ ID G +    +  P +A  YW
Sbjct: 188 AIMYLFLLTAYIISPRFVHRFVGYLEEEAVITYTSILRAIDEGRLRPTKSDVPEVARVYW 247

Query: 277 RLPKDATLKDVITVIRADEAHHRDVNHFASDIQ 309
            L KDAT +D+I VIRADEA HR VNH  +D+ 
Sbjct: 248 NLSKDATFRDLINVIRADEAEHRVVNHTFADMH 280


>gi|145350126|ref|XP_001419468.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|145357496|ref|XP_001422954.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579700|gb|ABO97761.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144583198|gb|ABP01313.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 221

 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 100/206 (48%), Positives = 125/206 (60%), Gaps = 13/206 (6%)

Query: 116 HHVPTTFLDKVAYRTVKLLR---------IPTDLFFQRRYGCRAMMLETVAAVPGMVGGM 166
           H  P    D +AY  V+  R          P        +  R + LETVA VPGMVG M
Sbjct: 16  HRQPRHVRDYLAYGLVQFSRWSFDKVTGYTPKKSLTTDGWLMRFIFLETVAGVPGMVGAM 75

Query: 167 LLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFF 226
           L H+ SLR  +   GWI  LLEEAENERMHL+T ++L +P    R+ VL  QGVFFNAFF
Sbjct: 76  LRHMMSLRTLKRDHGWIHTLLEEAENERMHLLTFLKLREPGLMFRLAVLGAQGVFFNAFF 135

Query: 227 VLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDID----SGSIENVPAPAIAIDYWRLPKDA 282
           + YL+SP+  HR VGYLEEEA+ +YT  L DID    +     +PAP +AI YWR+P DA
Sbjct: 136 LSYLISPRTCHRFVGYLEEEAVRTYTHALHDIDGDGPASEWATMPAPKLAIKYWRMPDDA 195

Query: 283 TLKDVITVIRADEAHHRDVNHFASDI 308
           T++D+I  +RADEA H  VNH  S +
Sbjct: 196 TVRDLIIAVRADEASHSHVNHTLSSM 221


>gi|71609882|dbj|BAE16575.1| alternative oxidase [Trypanosoma congolense]
          Length = 323

 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 99/213 (46%), Positives = 126/213 (59%), Gaps = 10/213 (4%)

Query: 107 ADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGC--------RAMMLETVAA 158
           AD+      H  P   +D +AYR V+  R   D F   R+G         R + LETVA 
Sbjct: 68  ADVENVAITHKKPNGLVDTLAYRGVRTCRWAFDTFSLYRFGNLTEGKMINRCLFLETVAG 127

Query: 159 VPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQ 218
           VPGMVGGML HLKSLR      GWI  LL EAENERMHLMT +EL +P +  R+ ++  Q
Sbjct: 128 VPGMVGGMLRHLKSLRYMTRDKGWINTLLIEAENERMHLMTFIELRQPGFAFRVSIIVTQ 187

Query: 219 GVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPA--PAIAIDYW 276
            + +      Y++SP+  HR VGYLEEEA+ +YT  L+ ID G +    +  P +A  YW
Sbjct: 188 AIMYLFLLTAYIISPRFVHRFVGYLEEEAVITYTSILRAIDEGRLRPTKSDVPEVARVYW 247

Query: 277 RLPKDATLKDVITVIRADEAHHRDVNHFASDIQ 309
            L KDAT +D+I VIRADEA HR VNH  +D+ 
Sbjct: 248 NLSKDATFRDLINVIRADEAEHRVVNHTFADMH 280


>gi|342184354|emb|CCC93836.1| putative alternative oxidase [Trypanosoma congolense IL3000]
          Length = 323

 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 99/213 (46%), Positives = 126/213 (59%), Gaps = 10/213 (4%)

Query: 107 ADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGC--------RAMMLETVAA 158
           AD+      H  P   +D +AYR V+  R   D F   R+G         R + LETVA 
Sbjct: 68  ADVENVAITHKKPNGLVDTLAYRGVRTCRWAFDTFSLYRFGNLTEGKVINRCLFLETVAG 127

Query: 159 VPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQ 218
           VPGMVGGML HLKSLR      GWI  LL EAENERMHLMT +EL +P +  R+ ++  Q
Sbjct: 128 VPGMVGGMLRHLKSLRYMTRDKGWINTLLIEAENERMHLMTFIELRQPGFAFRVSIIVTQ 187

Query: 219 GVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPA--PAIAIDYW 276
            + +      Y++SP+  HR VGYLEEEA+ +YT  L+ ID G +    +  P +A  YW
Sbjct: 188 AIMYLFLLTAYIISPRFVHRFVGYLEEEAVITYTSILRAIDEGRLRPTKSDVPEVARVYW 247

Query: 277 RLPKDATLKDVITVIRADEAHHRDVNHFASDIQ 309
            L KDAT +D+I VIRADEA HR VNH  +D+ 
Sbjct: 248 NLSKDATFRDLINVIRADEAEHRVVNHTFADMH 280


>gi|367046356|ref|XP_003653558.1| hypothetical protein THITE_2116081 [Thielavia terrestris NRRL 8126]
 gi|347000820|gb|AEO67222.1| hypothetical protein THITE_2116081 [Thielavia terrestris NRRL 8126]
          Length = 367

 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 96/224 (42%), Positives = 133/224 (59%), Gaps = 30/224 (13%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDL------------------------FFQRRYGCRAM 151
           H  P T  D VA++ V+L R  TDL                          + ++  R +
Sbjct: 107 HREPKTIGDWVAWKLVRLARWATDLATGIGREQQVDMKNPTTAVAAEKPLTEAQWLVRII 166

Query: 152 MLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYER 211
            LE++A VPGMVGGML HL SLR+ +   GWI+ LLEE+ NERMHL+    + +P W+ +
Sbjct: 167 FLESIAGVPGMVGGMLRHLHSLRRLKRDNGWIETLLEESYNERMHLLVFTRMAEPGWFMK 226

Query: 212 MLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI-----ENV 266
            ++L  QGVFFNA F+ YL+SPK+ HR VGYLEEEA+H+YT  LK+I++G +        
Sbjct: 227 TMILGAQGVFFNAMFLSYLISPKICHRFVGYLEEEAVHTYTRLLKEIENGDLPKWSNPKF 286

Query: 267 PAPAIAIDYWRLPKDA-TLKDVITVIRADEAHHRDVNHFASDIQ 309
             P IA  YWR+P+   T++D+I  +RADEA HR VNH   ++ 
Sbjct: 287 EVPEIAATYWRMPEGKRTMRDLILYVRADEAVHRGVNHTLGNLN 330


>gi|425778082|gb|EKV16227.1| Alternative oxidase [Penicillium digitatum Pd1]
 gi|425780618|gb|EKV18624.1| Alternative oxidase [Penicillium digitatum PHI26]
          Length = 361

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 93/216 (43%), Positives = 142/216 (65%), Gaps = 22/216 (10%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDL---------------FFQ---RRYGCRAMMLETVA 157
           H   + + D VA  TV++ R   D                 FQ    ++  R + LE+VA
Sbjct: 99  HRQASNWADWVALGTVRMFRWGMDTATGYRHPKPGQELSGIFQMTEHKWLNRFIFLESVA 158

Query: 158 AVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTV 217
            VPGMVGGML HL+SLRK +   GWI+ LLEEA NERMHL+T ++L +P W+ R++V+  
Sbjct: 159 GVPGMVGGMLRHLRSLRKMKRDNGWIETLLEEAFNERMHLLTFLKLAEPGWFMRLMVIGA 218

Query: 218 QGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAID 274
           QGVFFN FF+ YL+SP++ HR VGYLEEEA+ +Y+  ++++++G +   +++ AP IAI 
Sbjct: 219 QGVFFNGFFLAYLISPRICHRFVGYLEEEAVITYSRAIEELETGKLPEWKDLDAPEIAIK 278

Query: 275 YWRLPK-DATLKDVITVIRADEAHHRDVNHFASDIQ 309
           YW++P+    ++D++  +RADEA HR+VNH  ++++
Sbjct: 279 YWQMPEGQRQMRDLLLFVRADEAKHREVNHTLANLK 314


>gi|452981520|gb|EME81280.1| hypothetical protein MYCFIDRAFT_211800 [Pseudocercospora fijiensis
           CIRAD86]
          Length = 341

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 94/208 (45%), Positives = 133/208 (63%), Gaps = 14/208 (6%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDL----------FFQRRYGCRAMMLETVAAVPGMVGG 165
           H    T+ D +A   V+ LR   D             +R+Y  R + LE+VA VPGMV G
Sbjct: 94  HRNAKTWSDYMALGAVRTLRWGLDFATAYKKGEGQMTERKYMIRNIFLESVAGVPGMVAG 153

Query: 166 MLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAF 225
           ML HL S+R+ +   GWI+ LLEE+ NERMHL+T +++ +P W+ R +VL  QGVFFNAF
Sbjct: 154 MLRHLHSMRRMKRDHGWIETLLEESYNERMHLLTFLKMAEPGWFMRFMVLGAQGVFFNAF 213

Query: 226 FVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAIDYWRLPKD- 281
           FV YL+SP+  HR VG LEEEA+ +YT  + D+D+G +   E + AP IA+ YW +P+  
Sbjct: 214 FVSYLISPRTCHRFVGLLEEEAVITYTREIADLDAGRLPMWEKMQAPDIAVKYWNMPEGH 273

Query: 282 ATLKDVITVIRADEAHHRDVNHFASDIQ 309
            T++D++  IRADE+ HR+VNH   ++ 
Sbjct: 274 RTMRDLLLYIRADESKHREVNHTLGNLN 301


>gi|342890541|gb|EGU89342.1| hypothetical protein FOXB_00140 [Fusarium oxysporum Fo5176]
          Length = 341

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 87/161 (54%), Positives = 117/161 (72%), Gaps = 6/161 (3%)

Query: 149 RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKW 208
           R + LE++A VPGMVGGML HL SLR+ +   GWI+ LLEE+ NERMHL+T +++ +P W
Sbjct: 142 RFIFLESIAGVPGMVGGMLRHLSSLRRMKRDNGWIETLLEESYNERMHLLTFMKMCEPGW 201

Query: 209 YERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSG-----SI 263
           + +++++  QGVFFN  F+ YLLSPK+ HR VGYLEEEA+H+YT  +K+I+ G     S 
Sbjct: 202 FMKVMIIGAQGVFFNGLFICYLLSPKIVHRFVGYLEEEAVHTYTRCIKEIEDGHLPKWSD 261

Query: 264 ENVPAPAIAIDYWRLPKD-ATLKDVITVIRADEAHHRDVNH 303
            N   P IAI YW +P++  T+KD+I  IRADEA HR VNH
Sbjct: 262 PNFRIPDIAIQYWNIPEERQTMKDLILYIRADEAVHRGVNH 302


>gi|156061475|ref|XP_001596660.1| hypothetical protein SS1G_02882 [Sclerotinia sclerotiorum 1980]
 gi|154700284|gb|EDO00023.1| hypothetical protein SS1G_02882 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 360

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 97/227 (42%), Positives = 138/227 (60%), Gaps = 33/227 (14%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDL---------------------------FFQRRYGC 148
           H  P  F D+VA   V+ LR  TD                              +R++  
Sbjct: 96  HRKPRDFSDRVALCMVRFLRWCTDFATGYKHNVEEPKKASDSNAVAATKPYQMSERKWLI 155

Query: 149 RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKW 208
           R + LE+VA VPGMV GML HL+SLR  +   GWI+ LLEEA NERMHL+T +++ +P  
Sbjct: 156 RYVFLESVAGVPGMVAGMLRHLRSLRGLKRDNGWIETLLEEAYNERMHLLTFLKMYEPGI 215

Query: 209 YERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSG-----SI 263
           + R ++L  QGVFFN+FF+ YLLSP+  HR VGYLEEEA+ +YT  ++D+++G     S 
Sbjct: 216 FMRTMILGAQGVFFNSFFICYLLSPRTCHRFVGYLEEEAVLTYTLSIQDLENGHLPKWSD 275

Query: 264 ENVPAPAIAIDYWRLPKDA-TLKDVITVIRADEAHHRDVNHFASDIQ 309
            N  AP +AI+YW +P+D  +++D++  IRADEA HR+VNH   +++
Sbjct: 276 PNFKAPDLAIEYWGMPEDQRSMRDLLYYIRADEAKHREVNHTLGNLR 322


>gi|367023150|ref|XP_003660860.1| alternative oxidase [Myceliophthora thermophila ATCC 42464]
 gi|347008127|gb|AEO55615.1| alternative oxidase [Myceliophthora thermophila ATCC 42464]
          Length = 368

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 96/224 (42%), Positives = 136/224 (60%), Gaps = 30/224 (13%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDL------------------------FFQRRYGCRAM 151
           H  P T  D VA++ V+L R  TD                           + ++  R +
Sbjct: 108 HRQPKTVGDWVAWKLVRLARWATDFATGIGREQQVDMKNPTTSVTSQKPLTEAQWLVRII 167

Query: 152 MLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYER 211
            LE++A VPGMVGGML HL SLR+ +   GWI+ LLEE+ NERMHL+  + L KP W  +
Sbjct: 168 FLESIAGVPGMVGGMLRHLHSLRRLKRDNGWIETLLEESYNERMHLLVALTLGKPGWLMK 227

Query: 212 MLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI-----ENV 266
            ++L  QGVFFNA F+ YL+SPK++HR VGYLEEEA+H+YT  +++I++G +      + 
Sbjct: 228 TMILGAQGVFFNAMFLSYLISPKISHRFVGYLEEEAVHTYTRLIREIENGDLPKWSDPSF 287

Query: 267 PAPAIAIDYWRLPKDA-TLKDVITVIRADEAHHRDVNHFASDIQ 309
             P IA+ YWR+P+   T++D+   IRADEA HR VNH  S+++
Sbjct: 288 TVPDIAVTYWRMPEGKRTMRDLFLYIRADEAVHRGVNHTLSNLK 331


>gi|167518319|ref|XP_001743500.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778599|gb|EDQ92214.1| predicted protein [Monosiga brevicollis MX1]
          Length = 220

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 94/207 (45%), Positives = 129/207 (62%), Gaps = 11/207 (5%)

Query: 114 KKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGC--------RAMMLETVAAVPGMVGG 165
           + H  P    D+VA   ++++R   D F    +G         RA+ LETVA +PGMV G
Sbjct: 3   QTHIEPKDLSDRVALTAIRIIRKGFDFFSGYMFGPINETKFLRRAIFLETVAGIPGMVAG 62

Query: 166 MLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAF 225
            L HL+SLR  Q   GWI  LLEEAENERMHL+T  ++ +P    R +VL  QG+ +NA+
Sbjct: 63  SLRHLRSLRGMQRDNGWIHTLLEEAENERMHLLTFTKVKQPGIIFRSMVLAAQGIMWNAY 122

Query: 226 FVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAIDYWRLPKDA 282
           FV YL+SP+  HR +GYLEEEA+ +Y+  ++ +D G +    N  AP IA  YW L  DA
Sbjct: 123 FVAYLVSPRTCHRFIGYLEEEAVKTYSHAIEALDKGMMPTWNNKEAPEIAKTYWGLADDA 182

Query: 283 TLKDVITVIRADEAHHRDVNHFASDIQ 309
            ++DV+  +RADEA+HRDVNH  S ++
Sbjct: 183 LMRDVLLAVRADEANHRDVNHTLSTLK 209


>gi|290997319|ref|XP_002681229.1| alternative oxidase [Naegleria gruberi]
 gi|284094852|gb|EFC48485.1| alternative oxidase [Naegleria gruberi]
          Length = 241

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 103/226 (45%), Positives = 139/226 (61%), Gaps = 5/226 (2%)

Query: 92  SPWPWNCFMPWETYRADLSIDLKKHHV-----PTTFLDKVAYRTVKLLRIPTDLFFQRRY 146
           +P     F P+       + +L+K+ V     P    DK+A   +K LR+    FF  RY
Sbjct: 11  TPLAQAKFRPYGDNAHTNTQELEKYQVLRSYSPVDLTDKLALGIMKFLRVFVHGFFGNRY 70

Query: 147 GCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKP 206
              A++LETVAAVPG+V G   H  SLR  +   G I  L+EEAENERMHL+T +E+ KP
Sbjct: 71  LHHAVVLETVAAVPGIVAGGWRHFNSLRLMRRDHGHIGELMEEAENERMHLLTWMEMTKP 130

Query: 207 KWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENV 266
            + ERMLV+  Q  F + + + YLL+P+  HR+VGYLEEEA+ +Y+E+L+ ID G I N 
Sbjct: 131 TFLERMLVVGAQVGFTSFYTMAYLLNPRFCHRLVGYLEEEAVAAYSEFLEAIDKGDIPNC 190

Query: 267 PAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQG 312
            AP IAI YW L  ++T++DV+ V+RADE  HRD NH  SD    G
Sbjct: 191 KAPEIAIKYWNLKPESTMRDVVVVVRADECMHRDYNHDMSDKHRSG 236


>gi|449548967|gb|EMD39933.1| hypothetical protein CERSUDRAFT_92418 [Ceriporiopsis subvermispora
           B]
          Length = 343

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 93/185 (50%), Positives = 127/185 (68%), Gaps = 3/185 (1%)

Query: 130 TVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEE 189
           TV+ LR       +R++  R + LE+VA VPGMV  +L HL+SLR  +  GGWI  LLEE
Sbjct: 115 TVQELREKGYTMDERQWLRRILFLESVAGVPGMVAAVLRHLRSLRLMRRDGGWIHTLLEE 174

Query: 190 AENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIH 249
           AENERMHLMT + + KP  + R +VL  QGVF+NAFF+ YL+SP   HR V +LEEEA+ 
Sbjct: 175 AENERMHLMTFMSIRKPSIWFRAMVLGAQGVFYNAFFLSYLVSPTTCHRFVAHLEEEAVL 234

Query: 250 SYTEYLKDIDSGSI---ENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFAS 306
           +YT  +++++SG I    + PAP IA DYWRLP DA L DV+  +R+DE+ HR VNH  +
Sbjct: 235 TYTRCIEELESGRIPEWTDAPAPEIAKDYWRLPPDAKLLDVMYAVRSDESTHRFVNHSLA 294

Query: 307 DIQFQ 311
           ++ ++
Sbjct: 295 NLNYK 299


>gi|74272617|gb|ABA01104.1| mitochondrial alternative oxidase [Chlamydomonas incerta]
          Length = 260

 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 97/222 (43%), Positives = 134/222 (60%), Gaps = 11/222 (4%)

Query: 99  FMPWETYRADLSIDLKKHHV-PTTFLDKVAYRTVKLLR---------IPTDLFFQRRYGC 148
           +M    Y  +    ++  HV P      V  RT+++ R          P     + ++  
Sbjct: 23  YMAHPAYSDEYVESVRPTHVSPQKLHQHVGLRTIQVFRYLFDKATGYTPAGTMTEAQWLR 82

Query: 149 RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKW 208
           R + LETVA  PGMV GML HLKSLR      GWI  LLEEAENERMHL+T ++L +P  
Sbjct: 83  RMIFLETVAGCPGMVAGMLRHLKSLRSMSRDRGWIHTLLEEAENERMHLITFLQLRQPGP 142

Query: 209 YERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI-ENVP 267
             R +V+  QGVFFNA+F+ YLLSP+  H  VG+LEEEA+ +YT  L++ID+G + ++ P
Sbjct: 143 AFRAMVIVAQGVFFNAYFLAYLLSPRTCHAFVGFLEEEAVKTYTHALEEIDAGRLWKDTP 202

Query: 268 APAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQ 309
           AP +A+ YW L + AT++D+I  +RADEA H  VNH  S + 
Sbjct: 203 APPVAVQYWGLKQGATMRDLILAVRADEACHAHVNHTLSQLN 244


>gi|156392184|ref|XP_001635929.1| predicted protein [Nematostella vectensis]
 gi|156223027|gb|EDO43866.1| predicted protein [Nematostella vectensis]
          Length = 175

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 94/174 (54%), Positives = 113/174 (64%), Gaps = 9/174 (5%)

Query: 152 MLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYER 211
           MLETVA VPGM+G M  H  SLR+     GWI  LLEEAENERMHLMT +EL +P    R
Sbjct: 1   MLETVAGVPGMIGAMTRHFNSLRRLTRDHGWIHTLLEEAENERMHLMTALELKRPGILFR 60

Query: 212 MLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPA 268
            ++L  QGVF N FF+ YL SP+  HR VGYLEEEA+ +YT  L+ ID+G +     + A
Sbjct: 61  GVILAAQGVFVNMFFIAYLTSPRFCHRFVGYLEEEAVKTYTYCLECIDNGKLPTWNTLKA 120

Query: 269 PAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPL 322
           P IA +YW+L +DA ++DVI  IRADEAHHR VNH  S I        D P P 
Sbjct: 121 PKIASNYWKLKEDAVMRDVILAIRADEAHHRVVNHTLSSIHL------DDPNPF 168


>gi|159472945|ref|XP_001694605.1| alternative oxidase, isoform 1 [Chlamydomonas reinhardtii]
 gi|11245480|gb|AAG33633.1|AF314254_1 alternative oxidase 1 [Chlamydomonas reinhardtii]
 gi|9027543|gb|AAC05743.2| alternative oxidase [Chlamydomonas reinhardtii]
 gi|158276829|gb|EDP02600.1| alternative oxidase, isoform 1 [Chlamydomonas reinhardtii]
          Length = 360

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 94/204 (46%), Positives = 125/204 (61%), Gaps = 10/204 (4%)

Query: 116 HHVPTTFLDKVAYRTVKLLR---------IPTDLFFQRRYGCRAMMLETVAAVPGMVGGM 166
           H  P      V  RT+++ R          PT    + ++  R + LETVA  PGMV GM
Sbjct: 141 HVTPQKLHQHVGLRTIQVFRYLFDKATGYTPTGSMTEAQWLRRMIFLETVAGCPGMVAGM 200

Query: 167 LLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFF 226
           L HLKSLR      GWI  LLEEAENERMHL+T ++L +P    R +V+  QGVFFNA+F
Sbjct: 201 LRHLKSLRSMSRDRGWIHTLLEEAENERMHLITFLQLRQPGPAFRAMVILAQGVFFNAYF 260

Query: 227 VLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI-ENVPAPAIAIDYWRLPKDATLK 285
           + YLLSP+  H  VG+LEEEA+ +YT  L +ID+G + ++ PAP +A+ YW L   A ++
Sbjct: 261 IAYLLSPRTCHAFVGFLEEEAVKTYTHALVEIDAGRLWKDTPAPPVAVQYWGLKPGANMR 320

Query: 286 DVITVIRADEAHHRDVNHFASDIQ 309
           D+I  +RADEA H  VNH  S + 
Sbjct: 321 DLILAVRADEACHAHVNHTLSQLN 344


>gi|403351227|gb|EJY75100.1| Alternative oxidase isoform B [Oxytricha trifallax]
          Length = 275

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 102/229 (44%), Positives = 140/229 (61%), Gaps = 17/229 (7%)

Query: 95  PWNCFMPWETYRADLSIDLKK----HHVPTTFLDKVAYRTVKLLRIPTDL---FFQRRYG 147
           P N  MP   Y+     D++K    H  P  F D++A  TVK  R   DL   + Q RY 
Sbjct: 5   PKNHLMPHPIYQLK---DIEKLNFTHRKPADFTDRLALTTVKNFRRLFDLLTGYNQDRYS 61

Query: 148 -----CRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVE 202
                 R + LET+A VPGM GGM +HLKSLR  +   G+I  LLEEAENER HL   + 
Sbjct: 62  GRLWLNRVIFLETIAGVPGMCGGMTIHLKSLRTLKPDRGFIHYLLEEAENERTHLFLFMN 121

Query: 203 LVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGS 262
              P +  R ++   QGVF+N +F+ YL+SP+  HR VGYLEEEA+H+Y+ +LK +D+G 
Sbjct: 122 YKNPSYLFRAMIAMGQGVFWNFYFLWYLISPRFCHRFVGYLEEEAVHTYSIFLKQMDAGY 181

Query: 263 IE--NVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQ 309
           +   NV A  +A DY++L  DAT +D++  IRADE+ HR+ NH+ SD++
Sbjct: 182 LPEFNVQASKMARDYYQLSDDATFRDMVLSIRADESVHREFNHYFSDLK 230


>gi|392591621|gb|EIW80948.1| alternative oxidase [Coniophora puteana RWD-64-598 SS2]
          Length = 382

 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 89/169 (52%), Positives = 119/169 (70%), Gaps = 3/169 (1%)

Query: 143 QRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVE 202
           +R +  R + LE++A VPGMV  ML HL SLR  +   GWI  LLEEAENERMHLMT + 
Sbjct: 167 ERAWLSRILFLESIAGVPGMVAAMLRHLGSLRLMRRDSGWIHTLLEEAENERMHLMTFMT 226

Query: 203 LVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGS 262
           L +P  + R LVL  QGVFFN FF+ Y++SP++ HR VGYLEEEA+ +YT  +++I++G 
Sbjct: 227 LKQPSLFFRALVLGAQGVFFNVFFLSYMISPRICHRFVGYLEEEAVVTYTRCIEEIEAGR 286

Query: 263 I---ENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDI 308
           +    N+PAP IA DYWRL  +A L DVI  +R+DE+ HR VNH  +++
Sbjct: 287 LPAWSNMPAPEIAKDYWRLHPEANLLDVIYAVRSDESTHRFVNHSLANL 335


>gi|361131765|gb|EHL03417.1| putative Alternative oxidase, mitochondrial [Glarea lozoyensis
           74030]
          Length = 269

 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 90/221 (40%), Positives = 137/221 (61%), Gaps = 33/221 (14%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDL---------------------------FFQRRYGC 148
           H  P  F D+VA   V++LR  TD+                             +R++  
Sbjct: 9   HRKPADFSDRVALFMVRMLRWGTDIATGYKHDVESPKKIGDANVMAATKPYSMSERKWLT 68

Query: 149 RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKW 208
           R + LE+VA VPGMV  ML HL S+R+ +   GWI+ LLEE++NERMHL+T +++ +P W
Sbjct: 69  RFVFLESVAGVPGMVAAMLRHLNSMRRLKRDNGWIETLLEESQNERMHLLTFLKMAEPGW 128

Query: 209 YERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI----- 263
           + ++++L  QGVFFN+ F+ YL+SP+  HR VGYLEEEA+ +Y+  + D+++G +     
Sbjct: 129 FMKLMILGAQGVFFNSMFLSYLVSPRTCHRFVGYLEEEAVLTYSLAISDLENGKLPLWTH 188

Query: 264 ENVPAPAIAIDYWRLPKDA-TLKDVITVIRADEAHHRDVNH 303
            N   P IA+DYW++P+D  T++D++  +RADEA HR+VNH
Sbjct: 189 PNFKVPDIAVDYWKIPEDKRTMRDLLLYVRADEAKHREVNH 229


>gi|403375688|gb|EJY87819.1| Alternative oxidase isoform B [Oxytricha trifallax]
          Length = 273

 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 99/205 (48%), Positives = 129/205 (62%), Gaps = 11/205 (5%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDL--------FFQRRYGCRAMMLETVAAVPGMVGGML 167
           H  P  F D  A   V+  R   DL           +++  RA+ LETVA VPGMVGGM 
Sbjct: 43  HRKPDGFRDWFARTFVRFARGSFDLVSAYNEEKMSAQKWMTRAIFLETVAGVPGMVGGMT 102

Query: 168 LHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFV 227
            HLKSLR  +   GWI  LLEEAENERMHL   +EL KP    +  ++  QGVF+N +F+
Sbjct: 103 RHLKSLRSLKPDHGWIHNLLEEAENERMHLFIFLELKKPTPLFKAAIILTQGVFYNLYFI 162

Query: 228 LYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAIDYWRLPKDATL 284
            Y+L PK  HR VGYLEEEA+H+YT  LK +D+GSI     +PAP  A +Y+ L ++A +
Sbjct: 163 SYMLFPKYCHRFVGYLEEEAVHTYTVMLKQLDNGSIPEWSELPAPQNAREYYNLSENAKI 222

Query: 285 KDVITVIRADEAHHRDVNHFASDIQ 309
           +DVI  IRADE+ HR+VNH  +D++
Sbjct: 223 RDVILSIRADESIHREVNHRFADLK 247


>gi|171676978|ref|XP_001903441.1| hypothetical protein [Podospora anserina S mat+]
 gi|51701291|sp|Q9C206.1|AOX_PODAS RecName: Full=Alternative oxidase, mitochondrial; Flags: Precursor
 gi|14280024|gb|AAK58849.1|AF321004_1 alternate oxidase precursor [Podospora anserina]
 gi|12584590|emb|CAC27396.1| alternative oxidase [Podospora anserina]
 gi|170936556|emb|CAP61216.1| unnamed protein product [Podospora anserina S mat+]
          Length = 363

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 98/255 (38%), Positives = 146/255 (57%), Gaps = 45/255 (17%)

Query: 115 KHHVPTTFLDKVAYRTVKLLRIPTDL------------------------FFQRRYGCRA 150
           +H  P +  D +A++ V+L R  TD+                          + ++  R 
Sbjct: 102 QHRKPGSLSDWLAWKLVRLCRWGTDIATGIKPEQQVDKSNPTTAVAAQKPLTEAQWLVRF 161

Query: 151 MMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYE 210
           + LE++A VPGMV GML HL+SLR+ +   GWI+ LLEE+ NERMHL+T +++ +P W+ 
Sbjct: 162 IFLESIAGVPGMVAGMLRHLESLRRLKRDNGWIETLLEESYNERMHLLTFMKMCEPGWFM 221

Query: 211 RMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI-----EN 265
           + ++L  QGVFFNA F+ YL+SP++ HR VGYLEEEA+H+YT  +++I+ G +      N
Sbjct: 222 KTMILGAQGVFFNAMFLSYLISPRITHRFVGYLEEEAVHTYTRCIREIEQGDLPKWSDPN 281

Query: 266 VPAPAIAIDYWRLPKDA-TLKDVITVIRADEAHHRDVNH-------------FASDIQFQ 311
              P +A+ YW++P+   T++D+I  IRADEA HR VNH             F SD +  
Sbjct: 282 FQIPDLAVTYWKMPEGKRTMRDLILYIRADEAVHRGVNHTLSNLNHKEDPNPFVSDYKCD 341

Query: 312 GKELRDAPA--PLGY 324
               R  PA  P G+
Sbjct: 342 ADHQRPNPALKPTGF 356


>gi|51701289|sp|Q8X1N9.1|AOX_BLUGR RecName: Full=Alternative oxidase, mitochondrial; Flags: Precursor
 gi|18033103|gb|AAL56983.1|AF327336_1 alternative oxidase [Blumeria graminis]
          Length = 358

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 95/242 (39%), Positives = 141/242 (58%), Gaps = 36/242 (14%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDL------------------------FFQRRYGCRAM 151
           H  P  F D++A   V+ LR  TDL                          +R++  R +
Sbjct: 97  HRTPKDFSDRIALYLVRFLRFSTDLATGYKHDPVTITENGEKVLKKPYRMSERKWLIRMV 156

Query: 152 MLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYER 211
            LE+VA VPGMV GML HL SLR+ +   GWI+ LLEEA NERMHL+T +++ KP W+ +
Sbjct: 157 FLESVAGVPGMVAGMLRHLHSLRRLKRDNGWIETLLEEAYNERMHLLTFLKMAKPGWFMK 216

Query: 212 MLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPA- 270
            +++  QGVFFN+ F+ YL+SP+  HR V YLEEEA+ +Y+  ++DI++G +    +P  
Sbjct: 217 FMIIGAQGVFFNSMFLSYLISPRTCHRFVAYLEEEAVLTYSTAIQDIEAGLLPKWTSPEF 276

Query: 271 ----IAIDYWRLPK-DATLKDVITVIRADEAHHRDVNHFASDIQFQG------KELRDAP 319
               +A+ YW++P+ + T++D++  IRADEA HR+VNH   ++           E RD  
Sbjct: 277 RIPDLAVQYWKIPEGNRTMRDLLLYIRADEAKHREVNHTLGNLDQNEDPNPFVSEYRDKA 336

Query: 320 AP 321
           AP
Sbjct: 337 AP 338


>gi|115400946|ref|XP_001216061.1| alternative oxidase, mitochondrial precursor [Aspergillus terreus
           NIH2624]
 gi|114190002|gb|EAU31702.1| alternative oxidase, mitochondrial precursor [Aspergillus terreus
           NIH2624]
          Length = 324

 Score =  184 bits (467), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 99/223 (44%), Positives = 139/223 (62%), Gaps = 21/223 (9%)

Query: 101 PWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDL----------------FFQR 144
           P  T    LS+ +  H    T  DK+A  TV+ LR   D                   ++
Sbjct: 54  PVYTQEQILSVQIA-HRNAKTISDKLALGTVRFLRWGMDFVTGYRPNTSANPHANTMTEK 112

Query: 145 RYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELV 204
           ++  R + LE+VA VPGMV GML HLKS+R+ +   GWI+ LLEEA NERMHL+T + L 
Sbjct: 113 KWITRFIFLESVAGVPGMVAGMLRHLKSIRRMKRDYGWIETLLEEAYNERMHLLTFLNLA 172

Query: 205 KPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI- 263
           +P  + R++VL  Q VFF+AFF  YL+SP++ HR VGYLEEEA+ +YT+ +KD+++G + 
Sbjct: 173 EPSRFMRLMVLASQMVFFSAFFTAYLVSPRICHRFVGYLEEEAVITYTKAIKDLENGLLL 232

Query: 264 --ENVPAPAIAIDYWRLPKDA-TLKDVITVIRADEAHHRDVNH 303
             EN+ AP IAI YW +P+    ++ ++  +RADEA HRDVNH
Sbjct: 233 DWENLQAPPIAIKYWNMPEGKRCMRSLLLHVRADEAKHRDVNH 275


>gi|33327044|gb|AAQ08896.1| SHAM-sensitive alternative terminal oxidase isozyme II [Yarrowia
           lipolytica]
          Length = 349

 Score =  184 bits (466), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 95/212 (44%), Positives = 129/212 (60%), Gaps = 23/212 (10%)

Query: 115 KHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYG------------------CRAMMLETV 156
           +H    TF DK A   ++ +R   DLF   R+                    R + LE++
Sbjct: 94  RHREAKTFSDKCALAAIRTMRWSFDLFTGYRHPKPGQENLKRFEMTPDKWYQRFLFLESI 153

Query: 157 AAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLT 216
           A VPGMVGGM  HL+SLR  +    WI+ LLEEA NERMHL+T +++ KP ++ R ++L 
Sbjct: 154 AGVPGMVGGMCRHLQSLRALKRDRAWIETLLEEAYNERMHLLTFLKMHKPGYFMRTMILL 213

Query: 217 VQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI-----ENVPAPAI 271
            QGVFFN FF+ YL+SP++ HR VGYLEEEA+ +YT  + DID+G +       V  P I
Sbjct: 214 GQGVFFNLFFMAYLMSPRICHRFVGYLEEEAVITYTRCITDIDAGRLPEWEGHKVKIPEI 273

Query: 272 AIDYWRLPKDATLKDVITVIRADEAHHRDVNH 303
           AIDYW +  + T++D+I  IRADEA H +VNH
Sbjct: 274 AIDYWHMGPNPTMRDLIEYIRADEAKHCEVNH 305


>gi|50550329|ref|XP_502637.1| YALI0D09933p [Yarrowia lipolytica]
 gi|49648505|emb|CAG80825.1| YALI0D09933p [Yarrowia lipolytica CLIB122]
          Length = 349

 Score =  184 bits (466), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 95/212 (44%), Positives = 129/212 (60%), Gaps = 23/212 (10%)

Query: 115 KHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYG------------------CRAMMLETV 156
           +H    TF DK A   ++ +R   DLF   R+                    R + LE++
Sbjct: 94  RHREAKTFSDKCALAAIRTMRWSFDLFTGYRHPKPGQENLKRFEMTPDKWYQRFLFLESI 153

Query: 157 AAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLT 216
           A VPGMVGGM  HL+SLR  +    WI+ LLEEA NERMHL+T +++ KP ++ R ++L 
Sbjct: 154 AGVPGMVGGMCRHLQSLRALKRDRAWIETLLEEAYNERMHLLTFLKMHKPGYFMRTMILL 213

Query: 217 VQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI-----ENVPAPAI 271
            QGVFFN FF+ YL+SP++ HR VGYLEEEA+ +YT  + DID+G +       V  P I
Sbjct: 214 GQGVFFNLFFMAYLMSPRICHRFVGYLEEEAVITYTRCITDIDAGRLPEWEGHKVKIPEI 273

Query: 272 AIDYWRLPKDATLKDVITVIRADEAHHRDVNH 303
           AIDYW +  + T++D+I  IRADEA H +VNH
Sbjct: 274 AIDYWHMGPNPTMRDLIEYIRADEAKHCEVNH 305


>gi|402220460|gb|EJU00531.1| mitochondrial alternative oxidase [Dacryopinax sp. DJM-731 SS1]
          Length = 395

 Score =  183 bits (465), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 103/243 (42%), Positives = 140/243 (57%), Gaps = 31/243 (12%)

Query: 96  WNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTD---------------- 139
           W  F P  + +   S+D+ +H  P TF D+     V   R   D                
Sbjct: 92  WVLFHPVYSPKELHSVDVVRH-TPQTFSDRFIRDLVSFTRKSFDWISGYTQKELTLEDEK 150

Query: 140 -----------LFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLE 188
                      +  ++ +  R + LE++A VPGMV   L HL+SLR  +  GGWI  LLE
Sbjct: 151 LSVEELRKRRWILDEKAWLNRILFLESIAGVPGMVAATLRHLRSLRLMKRDGGWIHTLLE 210

Query: 189 EAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAI 248
           EAENERMHLMT + + +P    R LVL  QGVF+N FF+ YL+SPKL HR VG LEEEA+
Sbjct: 211 EAENERMHLMTFMAVKQPSLLFRTLVLGAQGVFYNLFFLSYLISPKLCHRFVGCLEEEAV 270

Query: 249 HSYTEYLKDIDSGSI---ENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFA 305
            +YT  +K++++G +   +NV AP IAIDYWRL  +ATL DVI  +R+DE+ HR VNH  
Sbjct: 271 ITYTHAIKELEAGRLPEWDNVQAPKIAIDYWRLKPNATLLDVIYAVRSDESTHRFVNHSF 330

Query: 306 SDI 308
           +++
Sbjct: 331 ANL 333


>gi|40313538|dbj|BAD06177.1| alternative oxidase [Cryptosporidium parvum]
          Length = 335

 Score =  183 bits (465), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 98/210 (46%), Positives = 131/210 (62%), Gaps = 10/210 (4%)

Query: 114 KKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYG------CRAMM-LETVAAVPGMVGGM 166
           K H  P  F DK++Y  V  LR   DL  + + G      CR ++ LETVA VPGMVG M
Sbjct: 126 KTHLCPNGFKDKMSYYLVIALRKSFDLLTRYKKGHNEYQWCRRIIFLETVAGVPGMVGAM 185

Query: 167 LLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELV-KPKWYERMLVLTVQGVFFNAF 225
           L H  SLRK +   GWI  LLEEAENERMHL+  ++L+ KP    R+ V+  Q  F   +
Sbjct: 186 LRHFSSLRKMKRDNGWIHTLLEEAENERMHLLISLQLINKPSILTRVSVIGTQFAFLIFY 245

Query: 226 FVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENV--PAPAIAIDYWRLPKDAT 283
            V Y++SPK +HR VGYLEEEA+ +YT  +++ID G +      AP  A  Y+ LP+DAT
Sbjct: 246 TVFYIISPKYSHRFVGYLEEEAVSTYTHLIEEIDKGLLPGFERKAPKFASVYYGLPEDAT 305

Query: 284 LKDVITVIRADEAHHRDVNHFASDIQFQGK 313
           ++D+   +R DE+HHRDVNH  +DI+  G+
Sbjct: 306 IRDLFLAMRRDESHHRDVNHNLADIRLNGE 335


>gi|402077745|gb|EJT73094.1| alternative oxidase [Gaeumannomyces graminis var. tritici
           R3-111a-1]
          Length = 346

 Score =  183 bits (465), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 93/213 (43%), Positives = 134/213 (62%), Gaps = 20/213 (9%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDL--------------FFQRRYGCRAMMLETVAAVPG 161
           H  P T  DK+A+  V+  R   D                 + ++  R + LE++A VPG
Sbjct: 98  HREPKTAGDKLAWALVRTSRWFMDRASAMSSDQLKGLKPLTEAQWLTRYIFLESIAGVPG 157

Query: 162 MVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVF 221
           MV GML HL SLR+ +   GWI+ LLEEA NERMHL+T +++ +P W+ +ML+L  QGV+
Sbjct: 158 MVAGMLRHLHSLRRMKRDNGWIETLLEEAYNERMHLLTFLKMCEPGWFLKMLILGAQGVY 217

Query: 222 FNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI-----ENVPAPAIAIDYW 276
           FNA FV YL+SPK+ HR VGYLEEEA+H+YT  +K++++G +          P IA+ YW
Sbjct: 218 FNALFVAYLISPKICHRFVGYLEEEAVHTYTRSIKELEAGQLPRWSDPGFKVPEIAVAYW 277

Query: 277 RLPKD-ATLKDVITVIRADEAHHRDVNHFASDI 308
            +P+   T++D++  IRADEA+HR VNH   ++
Sbjct: 278 GMPEGHRTMRDLLLYIRADEANHRGVNHTLGNL 310


>gi|66359376|ref|XP_626866.1| AOX1,alternative oxidase, possible fungal or bacterial origin, 2
           transmembrane regions [Cryptosporidium parvum Iowa II]
 gi|35375829|gb|AAQ84544.1| alternative oxidase [Cryptosporidium parvum]
 gi|46228123|gb|EAK89022.1| AOX1,alternative oxidase, possible fungal or bacterial origin, 2
           transmembrane regions [Cryptosporidium parvum Iowa II]
          Length = 335

 Score =  183 bits (465), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 98/210 (46%), Positives = 131/210 (62%), Gaps = 10/210 (4%)

Query: 114 KKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYG------CRAMM-LETVAAVPGMVGGM 166
           K H  P  F DK++Y  V  LR   DL  + + G      CR ++ LETVA VPGMVG M
Sbjct: 126 KTHLCPNGFKDKMSYYLVIALRKSFDLLTRYKKGHNEYQWCRRIIFLETVAGVPGMVGAM 185

Query: 167 LLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELV-KPKWYERMLVLTVQGVFFNAF 225
           L H  SLRK +   GWI  LLEEAENERMHL+  ++L+ KP    R+ V+  Q  F   +
Sbjct: 186 LRHFSSLRKMKRDNGWIHTLLEEAENERMHLLISLQLINKPSILTRVSVIGTQFAFLIFY 245

Query: 226 FVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENV--PAPAIAIDYWRLPKDAT 283
            V Y++SPK +HR VGYLEEEA+ +YT  +++ID G +      AP  A  Y+ LP+DAT
Sbjct: 246 TVFYIISPKYSHRFVGYLEEEAVSTYTHLIEEIDKGLLPGFERKAPKFASVYYGLPEDAT 305

Query: 284 LKDVITVIRADEAHHRDVNHFASDIQFQGK 313
           ++D+   +R DE+HHRDVNH  +DI+  G+
Sbjct: 306 IRDLFLAMRRDESHHRDVNHNLADIRLNGE 335


>gi|380095711|emb|CCC07185.1| putative alternative oxidase [Sordaria macrospora k-hell]
          Length = 341

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 94/210 (44%), Positives = 137/210 (65%), Gaps = 9/210 (4%)

Query: 108 DLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRR---YGCRAMMLETVAAVPGMVG 164
           +++  + +H  P T  D +A++ V++ R  TD+    R      R + LE++A VPGMV 
Sbjct: 93  EMTSVVPEHRKPETVGDWLAWKLVRICRWGTDIATGIRPEQQLVRFIFLESIAGVPGMVA 152

Query: 165 GMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNA 224
           GML HL SLR+ +   GWI+ LLEE+ NERMHL+T +++ +P    + L+L  QGVFFNA
Sbjct: 153 GMLRHLHSLRRLKRDNGWIETLLEESYNERMHLLTFMKMCEPGLLMKTLILGAQGVFFNA 212

Query: 225 FFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI-----ENVPAPAIAIDYWRLP 279
            F+ YL+SPK+ HR VGYLEEEA+H+YT  + +I+ G +     E    P +A+ YWR+P
Sbjct: 213 MFLSYLISPKITHRFVGYLEEEAVHTYTRCINEIEEGHLPKWRDERFQIPEMAVRYWRMP 272

Query: 280 KDA-TLKDVITVIRADEAHHRDVNHFASDI 308
           +   T+KD+I  +RADEA HR VNH  S++
Sbjct: 273 EGKRTMKDLIYYVRADEAVHRGVNHTLSNL 302


>gi|400596179|gb|EJP63955.1| alternative oxidase [Beauveria bassiana ARSEF 2860]
          Length = 593

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 94/218 (43%), Positives = 134/218 (61%), Gaps = 30/218 (13%)

Query: 116 HHVPTTFLDKVAYRTVKLLRI------------------PTDL------FFQRRYGCRAM 151
           H  P TF D +A++TV+  R                   PT          + ++  R +
Sbjct: 336 HRKPRTFGDWLAWKTVRFARYWMDKATGMDRQQQVDKSHPTTAVEAEKPLTEAQWLIRFV 395

Query: 152 MLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYER 211
            LE++A VPGMVGGML HL SLR+ +   GWI+ LLEE+ NERMHL+T +++ +P W+ +
Sbjct: 396 FLESIAGVPGMVGGMLRHLGSLRRMKRDNGWIETLLEESYNERMHLLTFMKMCEPGWFMK 455

Query: 212 MLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI-----ENV 266
           ++++  QGVFFN  F++YL +PK+ HR VGYLEEEA+H+YT  +K+I+ G +        
Sbjct: 456 LMIIGAQGVFFNGMFLMYLANPKIVHRFVGYLEEEAVHTYTRSIKEIEDGHLPRWADPKF 515

Query: 267 PAPAIAIDYWRLPKD-ATLKDVITVIRADEAHHRDVNH 303
             P IAI YWR+P+   T+KD++  IRADEA HR VNH
Sbjct: 516 RIPDIAIQYWRMPEGHQTMKDLLLYIRADEAGHRGVNH 553


>gi|51701290|sp|Q96UR9.1|AOX_MONFR RecName: Full=Alternative oxidase, mitochondrial; AltName:
           Full=MfAOX1; Flags: Precursor
 gi|16517111|gb|AAL24516.1| alternative oxidase [Monilinia fructicola]
          Length = 358

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 103/259 (39%), Positives = 146/259 (56%), Gaps = 50/259 (19%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDL---------------------------FFQRRYGC 148
           H  P  F D+VA   V+ LR  TD                              +R++  
Sbjct: 94  HRKPRDFSDRVALGMVRFLRWCTDFATGYKHNVEAPKTASDSNAVTATKPYQMSERKWLI 153

Query: 149 RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKW 208
           R + LE+VA VPGMV GML HL+SLR  +   GWI+ LLEEA NERMHL+T +++ +P  
Sbjct: 154 RYVFLESVAGVPGMVAGMLRHLRSLRGLKRDNGWIETLLEEAYNERMHLLTFLKMYEPGL 213

Query: 209 YERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI----- 263
           + R ++L  QGVFFN+FF+ YL SPK  HR VGYLEEEA+ +YT  ++D+++G +     
Sbjct: 214 FMRTMILGAQGVFFNSFFLCYLFSPKTCHRFVGYLEEEAVLTYTLSIQDLENGHLPKWAD 273

Query: 264 ENVPAPAIAIDYWRLPKD-ATLKDVITVIRADEAHHRDVNHFASDIQ----------FQG 312
            N  AP +AI+YW +P+   +++D++  IRADEA HR+VNH   +++            G
Sbjct: 274 PNFKAPDLAIEYWGMPEGHRSMRDLLYYIRADEAKHREVNHTLGNLKQDEDPNPFVSVYG 333

Query: 313 KELRDAPA-------PLGY 324
           KE+ D P        PLG+
Sbjct: 334 KEVADKPGKGIESLRPLGW 352


>gi|215983208|gb|ACJ71742.1| alternative oxidase [Paecilomyces sp. J18]
          Length = 372

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 95/208 (45%), Positives = 131/208 (62%), Gaps = 22/208 (10%)

Query: 124 DKVAYRTVKLLRIPTDL------------------FFQRRYGCRAMMLETVAAVPGMVGG 165
           D+VA   VKLLR   D                     + ++  R + LE+VA VPGMVGG
Sbjct: 125 DRVALMMVKLLRWGMDTVTGYKHPKKGKPLPPKFEMTEEKWLNRFLFLESVAGVPGMVGG 184

Query: 166 MLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAF 225
           ML HL+SLR  +   GWI++LLEEA NERMHL+T +++ +P W+ R++VL  QGVFFNAF
Sbjct: 185 MLRHLRSLRLMRRDNGWIESLLEEAYNERMHLLTFMKMAEPGWFMRLMVLGAQGVFFNAF 244

Query: 226 FVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAIDYWR-LPKD 281
           F+ YL SP+  HR VGYLEEEA+H+YT  ++D+++G +   +N+ AP IA+ YW  L   
Sbjct: 245 FLSYLCSPRTCHRFVGYLEEEAVHTYTRAIEDLEAGKLPKWQNMEAPEIAVQYWNMLEGK 304

Query: 282 ATLKDVITVIRADEAHHRDVNHFASDIQ 309
             + D+   IRADEA H +VNH   ++ 
Sbjct: 305 PKMLDLPLYIRADEAKHPEVNHTMGNLN 332


>gi|336269921|ref|XP_003349720.1| alternative oxidase [Sordaria macrospora k-hell]
          Length = 337

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 92/207 (44%), Positives = 137/207 (66%), Gaps = 7/207 (3%)

Query: 108 DLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGML 167
           +++  + +H  P T  D +A++ V++ R    L  + ++  R + LE++A VPGMV GML
Sbjct: 93  EMTSVVPEHRKPETVGDWLAWKLVRICRADKPLT-EAQWLVRFIFLESIAGVPGMVAGML 151

Query: 168 LHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFV 227
            HL SLR+ +   GWI+ LLEE+ NERMHL+T +++ +P    + L+L  QGVFFNA F+
Sbjct: 152 RHLHSLRRLKRDNGWIETLLEESYNERMHLLTFMKMCEPGLLMKTLILGAQGVFFNAMFL 211

Query: 228 LYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI-----ENVPAPAIAIDYWRLPKDA 282
            YL+SPK+ HR VGYLEEEA+H+YT  + +I+ G +     E    P +A+ YWR+P+  
Sbjct: 212 SYLISPKITHRFVGYLEEEAVHTYTRCINEIEEGHLPKWRDERFQIPEMAVRYWRMPEGK 271

Query: 283 -TLKDVITVIRADEAHHRDVNHFASDI 308
            T+KD+I  +RADEA HR VNH  S++
Sbjct: 272 RTMKDLIYYVRADEAVHRGVNHTLSNL 298


>gi|51701293|sp|Q9P429.1|AOX_VENIN RecName: Full=Alternative oxidase, mitochondrial; Flags: Precursor
 gi|9454424|gb|AAF87802.1|AF279690_1 alternative oxidase [Venturia inaequalis]
          Length = 361

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 99/214 (46%), Positives = 133/214 (62%), Gaps = 29/214 (13%)

Query: 124 DKVAYRTVKLLRIPTDLF------------------FQRRYG-------CRAMMLETVAA 158
           DKVA   VKLLR   D                     Q+RYG        R + LE+VA 
Sbjct: 109 DKVALIAVKLLRWGLDTVSGYKHGKAQALHAQDPQEAQKRYGMTGKQYLVRNVFLESVAG 168

Query: 159 VPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQ 218
           VPGMV GML HL S+R+ +   GWI+ LLEE+ NERMHL+  ++L +P W+ R+ VL  Q
Sbjct: 169 VPGMVAGMLRHLHSMRRMKRDHGWIETLLEESYNERMHLLIFLKLYEPGWFMRLAVLGAQ 228

Query: 219 GVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAIDY 275
           GVFFNA F+ YL+SP+  HR VGYLEEEA+ +YT  L D+++G +   E + AP IA+DY
Sbjct: 229 GVFFNAMFLSYLISPRTCHRFVGYLEEEAVVTYTRELADLEAGKLPEWETLAAPDIAVDY 288

Query: 276 WRLPKD-ATLKDVITVIRADEAHHRDVNHFASDI 308
           + LP+   T+KD++  +RADEA HR+VNH   ++
Sbjct: 289 YNLPEGHRTMKDLLLHVRADEAKHREVNHTLGNL 322


>gi|392566332|gb|EIW59508.1| alternative oxidase [Trametes versicolor FP-101664 SS1]
          Length = 315

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 103/247 (41%), Positives = 141/247 (57%), Gaps = 31/247 (12%)

Query: 96  WNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDL--------------- 140
           W  F P  T+    S+++  H    TF DK+AY  V L R   DL               
Sbjct: 24  WVLFHPVYTHDELRSVEVL-HRQAKTFSDKIAYSFVHLARWGFDLVSGYKHKPLPPNADK 82

Query: 141 ------------FFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLE 188
                         + ++  R + LE++AAVPGMV   L HL+SLR  Q   GWI  LLE
Sbjct: 83  MSLQELQDGGYLMNEAQWLKRILFLESIAAVPGMVAAALRHLRSLRLMQRDSGWIHTLLE 142

Query: 189 EAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAI 248
           EAENERMHLMT + L  P    R +V+  QGVF+NAFF+ YL+SP  +HR VG+LEEEA+
Sbjct: 143 EAENERMHLMTFMTLKNPSILFRAMVIAAQGVFYNAFFLSYLISPSTSHRFVGHLEEEAV 202

Query: 249 HSYTEYLKDIDSGSI---ENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFA 305
            +YT  +++I++G +    ++PAP IA DYWRL  DA   DVI  +R+DE+ HR VNH  
Sbjct: 203 ITYTRCIQEIEAGHLPKWADLPAPEIAKDYWRLGPDAKFLDVIYAVRSDESTHRFVNHSL 262

Query: 306 SDIQFQG 312
           + ++++ 
Sbjct: 263 ASLKYES 269


>gi|71747778|ref|XP_822944.1| alternative oxidase [Trypanosoma brucei brucei strain 927/4
           GUTat10.1]
 gi|51338731|sp|Q26710.2|AOX_TRYBB RecName: Full=Alternative oxidase, mitochondrial; Flags: Precursor
 gi|17129642|dbj|BAB72245.1| alternative oxidase [Trypanosoma brucei brucei]
 gi|17129644|dbj|BAB72256.1| alternative oxidase [Trypanosoma brucei brucei]
 gi|45825838|gb|AAB46424.2| alternative oxidase [Trypanosoma brucei brucei]
 gi|62701577|dbj|BAD95615.1| alternative oxidase [Trypanosoma brucei gambiense]
 gi|70832612|gb|EAN78116.1| alternative oxidase [Trypanosoma brucei brucei strain 927/4
           GUTat10.1]
 gi|71609888|dbj|BAE16578.1| alternative oxidase [Trypanosoma evansi]
 gi|108743274|dbj|BAE95411.1| alternative oxidase [Trypanosoma brucei gambiense]
 gi|108743276|dbj|BAE95412.1| alternative oxidase [Trypanosoma brucei rhodesiense]
 gi|261332779|emb|CBH15774.1| alternative oxidase, putative [Trypanosoma brucei gambiense DAL972]
          Length = 329

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 98/217 (45%), Positives = 128/217 (58%), Gaps = 12/217 (5%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGC--------RAMMLETVAAVPGMVGGML 167
           H  P   +D +AYR+V+  R   D F   R+G         R + LETVA VPGMVGGML
Sbjct: 77  HKKPNGLVDTLAYRSVRTCRWLFDTFSLYRFGSITESKVISRCLFLETVAGVPGMVGGML 136

Query: 168 LHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFV 227
            HL SLR      GWI  LL EAENERMHLMT +EL +P    R+ ++  Q + +    V
Sbjct: 137 RHLSSLRYMTRDKGWINTLLVEAENERMHLMTFIELRQPGLPLRVSIIITQAIMYLFLLV 196

Query: 228 LYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVP--APAIAIDYWRLPKDATLK 285
            Y++SP+  HR VGYLEEEA+ +YT  ++ ID G +       P +A  YW L K+AT +
Sbjct: 197 AYVISPRFVHRFVGYLEEEAVITYTGVMRAIDEGRLRPTKNDVPEVARVYWNLSKNATFR 256

Query: 286 DVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPL 322
           D+I VIRADEA HR VNH  +D+    K L+++  P 
Sbjct: 257 DLINVIRADEAEHRVVNHTFADM--HEKRLQNSVNPF 291


>gi|452002528|gb|EMD94986.1| hypothetical protein COCHEDRAFT_1168437 [Cochliobolus
           heterostrophus C5]
          Length = 356

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 97/217 (44%), Positives = 133/217 (61%), Gaps = 29/217 (13%)

Query: 116 HHVPTTFLDKVAYRTVKLLR------------IPTDL-------------FFQRRYGCRA 150
           H    T  DKVA   VK+LR             P D+               + +Y  R 
Sbjct: 96  HREAKTMSDKVALIAVKVLRWGLDRVTGYKHPKPVDVDTKDPVAARKQFAMTEEKYLIRN 155

Query: 151 MMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYE 210
           + LE+VA VPGMV GML HL S+R+ +   GWI++LLEE+ NERMHL+  +++ +P  + 
Sbjct: 156 VFLESVAGVPGMVAGMLRHLHSMRRMKRDNGWIESLLEESYNERMHLLVFLKMQRPGPFM 215

Query: 211 RMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVP 267
           R++VL  QGVFFNA F  YLLSP+  HR +GYLEEEA+ +YT  +KD+D G +   E + 
Sbjct: 216 RLMVLGAQGVFFNALFFAYLLSPRTVHRFIGYLEEEAVITYTRQIKDLDEGRLPKWEKLE 275

Query: 268 APAIAIDYWRLPKD-ATLKDVITVIRADEAHHRDVNH 303
           AP IAIDYW +P+   T++D++  IRADE+ HR+VNH
Sbjct: 276 APEIAIDYWHMPEGHRTMRDLLLYIRADESKHREVNH 312


>gi|393243185|gb|EJD50700.1| alternative oxidase [Auricularia delicata TFB-10046 SS5]
          Length = 370

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 89/163 (54%), Positives = 112/163 (68%), Gaps = 3/163 (1%)

Query: 149 RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKW 208
           R + LE++A VPGMV     HL+SLR  +   GWI  LLEEAENERMHLMT + L  P  
Sbjct: 144 RILFLESIAGVPGMVAATCRHLRSLRLMRRDAGWIHTLLEEAENERMHLMTFMTLRNPSI 203

Query: 209 YERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---EN 265
             R L+L  QGVF+N FF  YL SPK  HR VG LEEEA+++YT+ + DI +G +    +
Sbjct: 204 GFRALILGAQGVFYNLFFFSYLFSPKTCHRFVGILEEEAVYTYTQCISDIKNGHLPEWAD 263

Query: 266 VPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDI 308
            PAP IAIDYWRLPK+ATL DVI  +R+DE+ HR VNH  +++
Sbjct: 264 KPAPEIAIDYWRLPKNATLLDVIYAVRSDESTHRFVNHTLANL 306


>gi|401881329|gb|EJT45629.1| Alternative oxidase [Trichosporon asahii var. asahii CBS 2479]
 gi|406701771|gb|EKD04883.1| Alternative oxidase [Trichosporon asahii var. asahii CBS 8904]
          Length = 400

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 102/210 (48%), Positives = 137/210 (65%), Gaps = 8/210 (3%)

Query: 118 VPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQ 177
           VP + L K     +  LR   +L   + +  R ++LE++A VPGMVGG L HL+SLR  +
Sbjct: 139 VPASVL-KENPNAIAELRKSGELLSDKDWMTRIILLESIAGVPGMVGGTLRHLRSLRLLR 197

Query: 178 HSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAH 237
             GGWI  LLEEAENERMHL+T + + +P W+ R LV+  QGVF+  FF+ YL++PKLAH
Sbjct: 198 RDGGWIHTLLEEAENERMHLLTFLTVAQPGWFTRALVMAGQGVFYPMFFLTYLVAPKLAH 257

Query: 238 RVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAIDYWRLPKDATLKDVITVIRAD 294
           R VG LEEEA+ +Y+  + D++ G +    + PAP IAIDYWRL  +A+L DVI  +RAD
Sbjct: 258 RFVGALEEEAVRTYSHCINDVEKGFVPEWTDKPAPQIAIDYWRLKPNASLLDVIKAVRAD 317

Query: 295 EAHHRDVNHFASDI----QFQGKELRDAPA 320
           EA HR VNH  +D+     F    L +APA
Sbjct: 318 EATHRFVNHSLADLDQTRDFNPFALAEAPA 347


>gi|67595330|ref|XP_665993.1| alternative oxidase [Cryptosporidium hominis TU502]
 gi|35375840|gb|AAQ84545.1| alternative oxidase [Cryptosporidium parvum]
 gi|54656887|gb|EAL35765.1| alternative oxidase [Cryptosporidium hominis]
          Length = 335

 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 97/210 (46%), Positives = 130/210 (61%), Gaps = 10/210 (4%)

Query: 114 KKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYG------CRAMM-LETVAAVPGMVGGM 166
           K H  P  F DK++Y  V  LR   DL  +   G      CR ++ LETVA VPGMVG M
Sbjct: 126 KTHLCPNGFKDKMSYYLVIALRKSFDLLTRYNKGHNEYQWCRRIIFLETVAGVPGMVGAM 185

Query: 167 LLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELV-KPKWYERMLVLTVQGVFFNAF 225
           L H  SLRK +   GWI  LLEEAENERMHL+  ++L+ KP    R+ V+  Q  F   +
Sbjct: 186 LRHFSSLRKMKRDNGWIHTLLEEAENERMHLLISLQLINKPSILTRVSVIGTQFAFLIFY 245

Query: 226 FVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENV--PAPAIAIDYWRLPKDAT 283
            + Y++SPK +HR VGYLEEEA+ +YT  +++ID G +      AP  A  Y+ LP+DAT
Sbjct: 246 TIFYIISPKYSHRFVGYLEEEAVSTYTHLIEEIDKGLLPGFEKKAPKFASVYYGLPEDAT 305

Query: 284 LKDVITVIRADEAHHRDVNHFASDIQFQGK 313
           ++D+   +R DE+HHRDVNH  +DI+  G+
Sbjct: 306 IRDLFLAMRRDESHHRDVNHNLADIRLNGE 335


>gi|169600395|ref|XP_001793620.1| hypothetical protein SNOG_03031 [Phaeosphaeria nodorum SN15]
 gi|111068642|gb|EAT89762.1| hypothetical protein SNOG_03031 [Phaeosphaeria nodorum SN15]
          Length = 348

 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 87/191 (45%), Positives = 130/191 (68%), Gaps = 16/191 (8%)

Query: 143 QRRYG-------CRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERM 195
           QR+YG        R + LE++A VPGMV GM+ HL S+R+ +   GWI+ LLEE+ NERM
Sbjct: 133 QRKYGMTAKKYMIRNVFLESIAGVPGMVAGMIRHLNSMRRMKRDNGWIETLLEESYNERM 192

Query: 196 HLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYL 255
           HL+  +++ +P  + R +VL  QGV+ NA F  YL+SP++ HR+VGYLEEEA+++YT  +
Sbjct: 193 HLLVFLKMQQPGPFMRFMVLAAQGVWCNAMFFAYLISPRIVHRLVGYLEEEAVYTYTRQI 252

Query: 256 KDIDSGSI---ENVPAPAIAIDYWRLPK-DATLKDVITVIRADEAHHRDVNHFASDIQFQ 311
           KD+D+G +   E + AP IAIDYW++P+ + T++D++  IRADE+ HR+VNH      F 
Sbjct: 253 KDLDAGRLPEWEKLQAPQIAIDYWKMPEGNRTMRDLLLYIRADESKHREVNH-----TFG 307

Query: 312 GKELRDAPAPL 322
             + ++ P P 
Sbjct: 308 NLDQKEDPNPF 318


>gi|340520319|gb|EGR50555.1| predicted protein [Trichoderma reesei QM6a]
          Length = 315

 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 86/167 (51%), Positives = 117/167 (70%), Gaps = 6/167 (3%)

Query: 149 RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKW 208
           R + LE++A VPGMVGGML HL SLR  +   GWI+ LLEE+ NERMHL+T + + +P W
Sbjct: 116 RFVFLESIAGVPGMVGGMLRHLSSLRYMKRDNGWIETLLEESYNERMHLLTFMTMCEPGW 175

Query: 209 YERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSG-----SI 263
           + +++++  QGVFFN+ FV YLL PK+ HR VGYLEEEA+H+YT  + +I+ G     S 
Sbjct: 176 FMKLMIIGAQGVFFNSLFVAYLLHPKIVHRFVGYLEEEAVHTYTRAILEIEEGHLPKWSN 235

Query: 264 ENVPAPAIAIDYWRLPKD-ATLKDVITVIRADEAHHRDVNHFASDIQ 309
            N   P IA+ YWR+P++  T+KD+I  IRADEA HR VNH   ++ 
Sbjct: 236 PNFRIPDIAVQYWRMPEEHRTMKDLIMYIRADEASHRGVNHTLGNLN 282


>gi|380488128|emb|CCF37588.1| alternative oxidase [Colletotrichum higginsianum]
          Length = 235

 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 86/168 (51%), Positives = 118/168 (70%), Gaps = 6/168 (3%)

Query: 148 CRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPK 207
            R + LE++A VPGMV GML HL SLR+ +   GWI++LLEE+ NERMHL+T +++ +P 
Sbjct: 35  VRFIFLESIAGVPGMVAGMLRHLGSLRRMKRDNGWIESLLEESFNERMHLLTFMKMSEPG 94

Query: 208 WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSG-----S 262
           W+ ++++L  QGVFFN  F+ YL++PK+ HR VGYLEEEA+H+YT  L +ID G     S
Sbjct: 95  WFMKLMILGAQGVFFNGMFLSYLIAPKITHRFVGYLEEEAVHTYTRCLYEIDLGLLPKWS 154

Query: 263 IENVPAPAIAIDYWRLPKDA-TLKDVITVIRADEAHHRDVNHFASDIQ 309
             N   P IA+ YWR+P+   T+KD+I  IRADEA HR VNH   ++ 
Sbjct: 155 DPNFTIPDIAVQYWRIPEGKRTMKDLIMYIRADEAVHRGVNHTLGNLN 202


>gi|348681991|gb|EGZ21807.1| hypothetical protein PHYSODRAFT_496550 [Phytophthora sojae]
          Length = 306

 Score =  181 bits (458), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 109/241 (45%), Positives = 149/241 (61%), Gaps = 16/241 (6%)

Query: 87  TREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFL-DKVAYRTVKLLRI--------- 136
           T  DG P  W   +    Y  D    +++ H P   + ++VAY  VK LR          
Sbjct: 58  TTTDGEPI-WENPINHAVYDLDKIATMEQTHHPIVKMHERVAYMAVKALRTGFDVISGYR 116

Query: 137 -PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERM 195
            P     ++ +  R + LE+VA VPGMVGGML HL+SLR  +   GWI  LLEEAENERM
Sbjct: 117 GPGGAMTEKDWLNRCLFLESVAGVPGMVGGMLRHLRSLRLLKRDYGWIHTLLEEAENERM 176

Query: 196 HLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYL 255
           HL+  + + +P ++ R LV+  QGVFFN FF+ YL+SPK  HR VGYLEEEA+ +Y+  L
Sbjct: 177 HLLIFMNIKQPGYFFRALVVGAQGVFFNGFFLTYLVSPKTCHRFVGYLEEEAVKTYSCLL 236

Query: 256 KDIDSGSIE---NVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNH-FASDIQFQ 311
           +DI+ G ++      AP IA  Y++LP+DA++ DV+  +RADEA+HRDVNH FA+  Q +
Sbjct: 237 QDIEDGHLDAWKEKKAPLIAQTYYKLPEDASIYDVVKCVRADEANHRDVNHAFANLDQKK 296

Query: 312 G 312
           G
Sbjct: 297 G 297


>gi|395331045|gb|EJF63427.1| alternative oxidase [Dichomitus squalens LYAD-421 SS1]
          Length = 386

 Score =  180 bits (457), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 97/222 (43%), Positives = 134/222 (60%), Gaps = 30/222 (13%)

Query: 121 TFLDKVAYRTVKLLR-------------IPTD--------------LFFQRRYGCRAMML 153
           TF D+VA+  VK+ R             +PT+              L  + ++  R + L
Sbjct: 120 TFSDRVAHTFVKIARWAFDFASGYKHKPLPTNAASMSLEELRNGGYLMDESQWLRRILFL 179

Query: 154 ETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERML 213
           E++AAVPGMV   L HL+SLR  +   GWI  LLEEAENERMHLMT + L  P    R +
Sbjct: 180 ESIAAVPGMVAAALRHLRSLRLMRRDHGWIHTLLEEAENERMHLMTFMTLKNPSRLFRAM 239

Query: 214 VLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPA 270
           VL  QGVF+NAFF+ YL+SP   HR VG+LEEEA+ +YT  +++I++G +    N+PAP 
Sbjct: 240 VLGAQGVFYNAFFLCYLISPSTCHRFVGHLEEEAVVTYTRCIQEIEAGRLPEWTNLPAPE 299

Query: 271 IAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQG 312
           IA DYWRL  DA   DV+  +R+DE+ HR VNH  + ++++ 
Sbjct: 300 IAKDYWRLGPDAKFLDVVYAVRSDESTHRFVNHSLASLKYES 341


>gi|322697635|gb|EFY89413.1| Alternative oxidase [Metarhizium acridum CQMa 102]
          Length = 354

 Score =  180 bits (457), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 82/168 (48%), Positives = 118/168 (70%), Gaps = 6/168 (3%)

Query: 148 CRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPK 207
            R + LE++A VPGMVGGML HL SLR+ +   GWI+ LLEE+ NERMHL+T +++ +P 
Sbjct: 154 VRFVFLESIAGVPGMVGGMLRHLSSLRRMKRDNGWIETLLEESYNERMHLLTFMKMCEPG 213

Query: 208 WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---- 263
           W+ +++++  QGVFFNA F+ YLL P++ HR VGYLEEEA+H+YT  +++I+ G +    
Sbjct: 214 WFMKLMIIGAQGVFFNALFITYLLHPRIVHRFVGYLEEEAVHTYTRAIREIEDGHLPKWA 273

Query: 264 -ENVPAPAIAIDYWRLPK-DATLKDVITVIRADEAHHRDVNHFASDIQ 309
                 P IA+ YW +P+ + T+KD+I  IRADEA HR VNH   ++ 
Sbjct: 274 DPKFQIPDIAVQYWNMPEGNRTMKDLILYIRADEAGHRGVNHTLGNLN 321


>gi|42733304|dbj|BAD11307.1| alternative oxidase [Trypanosoma vivax]
          Length = 328

 Score =  180 bits (456), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 98/217 (45%), Positives = 127/217 (58%), Gaps = 12/217 (5%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGC--------RAMMLETVAAVPGMVGGML 167
           H      +D +AYR V+  R   D F   R+G         R + LETVA VPGMVGGML
Sbjct: 78  HKPAEGIVDTLAYRLVRTCRWAFDTFSLYRFGSLTEQKVINRCLFLETVAGVPGMVGGML 137

Query: 168 LHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFV 227
            HL SLR+ +   GWI  LL EAENERMHLMT +EL +P    R+ +   Q + ++   +
Sbjct: 138 RHLTSLRQMRRDKGWINTLLVEAENERMHLMTFIELRQPGVVFRLSIKITQAIMYSFLLI 197

Query: 228 LYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENV--PAPAIAIDYWRLPKDATLK 285
            Y+ SP+  HR VGYLEEEA+ +YT  L+ ID G +  +    P +A  YW L KDAT +
Sbjct: 198 AYITSPRFVHRFVGYLEEEAVVTYTGILRAIDDGRLPPMKNAVPDVARVYWGLNKDATFR 257

Query: 286 DVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPL 322
           D+I VIRADEA HR VNH  +D+    K L++   P 
Sbjct: 258 DLINVIRADEAEHRVVNHTFADM--HAKRLQNCVNPF 292


>gi|209880133|ref|XP_002141506.1| alternative oxidase family protein [Cryptosporidium muris RN66]
 gi|209557112|gb|EEA07157.1| alternative oxidase family protein [Cryptosporidium muris RN66]
          Length = 336

 Score =  180 bits (456), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 99/198 (50%), Positives = 123/198 (62%), Gaps = 10/198 (5%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYG------CRAMM-LETVAAVPGMVGGMLL 168
           H  P T +D++AY +V  LR   DL    +YG      CR ++ LET+A VPGMVG M+ 
Sbjct: 122 HITPETLIDRLAYNSVLFLRKSFDLLTGYKYGHDERKWCRRIVFLETIAGVPGMVGAMVR 181

Query: 169 HLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVK-PKWYERMLVLTVQGVFFNAFFV 227
           HL SLR+ +   GWI  LLEEAENERMHLM  + L   P  + R+ VL  Q  F   + +
Sbjct: 182 HLHSLRRMERDYGWIHTLLEEAENERMHLMISLLLRHPPSLFVRLSVLGAQFGFLIYYTL 241

Query: 228 LYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENV--PAPAIAIDYWRLPKDATLK 285
            Y +SPK  HR VGYLEEEA+ +YT  + DID G +     PAP  A  Y+ LPKDATLK
Sbjct: 242 CYAISPKYCHRFVGYLEEEAVRTYTRLISDIDLGKLPEFTSPAPKYAKLYYGLPKDATLK 301

Query: 286 DVITVIRADEAHHRDVNH 303
           DV   +R DE+HHRDVNH
Sbjct: 302 DVFLAMRRDESHHRDVNH 319


>gi|85106053|ref|XP_962086.1| alternative oxidase, mitochondrial precursor [Neurospora crassa
           OR74A]
 gi|28923681|gb|EAA32850.1| alternative oxidase, mitochondrial precursor [Neurospora crassa
           OR74A]
          Length = 362

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 95/231 (41%), Positives = 140/231 (60%), Gaps = 30/231 (12%)

Query: 108 DLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDL------------------------FFQ 143
           +++  + +H  P T  D +A++ V++ R  TD+                          +
Sbjct: 93  EMTSVVPEHRKPETVGDWLAWKLVRICRWATDIATGIRPEQQVDKHHPTTATSADKPLTE 152

Query: 144 RRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVEL 203
            ++  R + LE++A VPGMV GML HL SLR+ +   GWI+ LLEE+ NERMHL+T +++
Sbjct: 153 AQWLVRFIFLESIAGVPGMVAGMLRHLHSLRRLKRDNGWIETLLEESYNERMHLLTFMKM 212

Query: 204 VKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSG-- 261
            +P    + L+L  QGVFFNA F+ YL+SPK+ HR VGYLEEEA+H+YT  +++I+ G  
Sbjct: 213 CEPGLLMKTLILGAQGVFFNAMFLSYLISPKITHRFVGYLEEEAVHTYTRCIREIEEGHL 272

Query: 262 ---SIENVPAPAIAIDYWRLPKDA-TLKDVITVIRADEAHHRDVNHFASDI 308
              S E    P +A+ YWR+P+   T+KD+I  IRADEA HR VNH  S++
Sbjct: 273 PKWSDEKFEIPEMAVRYWRMPEGKRTMKDLIHYIRADEAVHRGVNHTLSNL 323


>gi|3023302|sp|Q01355.1|AOX_NEUCR RecName: Full=Alternative oxidase, mitochondrial; Short=ALTOX;
           Flags: Precursor
 gi|1161144|gb|AAC37481.1| alternative oxidase [Neurospora crassa]
 gi|24061748|gb|AAN39882.1| alternative oxidase [Neurospora crassa]
          Length = 362

 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 95/231 (41%), Positives = 140/231 (60%), Gaps = 30/231 (12%)

Query: 108 DLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDL------------------------FFQ 143
           +++  + +H  P T  D +A++ V++ R  TD+                          +
Sbjct: 93  EMTSVVPEHRKPETVGDWLAWKLVRICRWATDIATGIRPEQQVDKHHPTTATSADKPLTE 152

Query: 144 RRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVEL 203
            ++  R + LE++A VPGMV GML HL SLR+ +   GWI+ LLEE+ NERMHL+T +++
Sbjct: 153 AQWLVRFIFLESIAGVPGMVAGMLRHLHSLRRLKRDNGWIETLLEESYNERMHLLTFMKM 212

Query: 204 VKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSG-- 261
            +P    + L+L  QGVFFNA F+ YL+SPK+ HR VGYLEEEA+H+YT  +++I+ G  
Sbjct: 213 CEPGLLMKTLILGAQGVFFNAMFLSYLISPKITHRFVGYLEEEAVHTYTRCIREIEEGHL 272

Query: 262 ---SIENVPAPAIAIDYWRLPKDA-TLKDVITVIRADEAHHRDVNHFASDI 308
              S E    P +A+ YWR+P+   T+KD+I  IRADEA HR VNH  S++
Sbjct: 273 PKWSDEKFEIPEMAVRYWRMPEGKRTMKDLIHYIRADEAVHRGVNHTLSNL 323


>gi|393212505|gb|EJC98005.1| alternative oxidase [Fomitiporia mediterranea MF3/22]
          Length = 379

 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 88/183 (48%), Positives = 120/183 (65%), Gaps = 3/183 (1%)

Query: 130 TVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEE 189
           +VK LR    +  +  +  R + LET+A +PGM    + HL SLR  +   GWI  LLEE
Sbjct: 149 SVKELREQGYIMTETGWMNRCLFLETIAGIPGMAAATIRHLHSLRLLRRDAGWIHTLLEE 208

Query: 190 AENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIH 249
           AENERMHLM+ + + KP  + R L+L  QGVF+N FF  YL++P++ HR VGYLEEEA+ 
Sbjct: 209 AENERMHLMSFLAIRKPGIFMRGLILGAQGVFYNVFFFSYLMAPRVCHRFVGYLEEEAVK 268

Query: 250 SYTEYLKDIDSGSI---ENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFAS 306
           +YT  + D+++G     EN PAP IA DYWRL  +ATL D+I  IR+DE  HR VNH  +
Sbjct: 269 TYTALIADLENGRFPEWENKPAPPIAKDYWRLRDNATLLDMIYAIRSDEVTHRFVNHSLA 328

Query: 307 DIQ 309
           +++
Sbjct: 329 NLK 331


>gi|336470634|gb|EGO58795.1| mitochondrial Alternative oxidase [Neurospora tetrasperma FGSC
           2508]
 gi|350291699|gb|EGZ72894.1| mitochondrial alternative oxidase [Neurospora tetrasperma FGSC
           2509]
          Length = 362

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 94/231 (40%), Positives = 140/231 (60%), Gaps = 30/231 (12%)

Query: 108 DLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDL------------------------FFQ 143
           +++  + +H  P T  D +A++ V++ R  TD+                          +
Sbjct: 93  EMTSVVPEHRKPETVGDWLAWKLVRICRWATDIATGIRPEQQVDKHHPTTATSADKPLTE 152

Query: 144 RRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVEL 203
            ++  R + LE++A VPGMV GML HL SLR+ +   GWI+ LLEE+ NERMHL+T +++
Sbjct: 153 AQWLVRFIFLESIAGVPGMVAGMLRHLHSLRRLKRDNGWIETLLEESYNERMHLLTFMKM 212

Query: 204 VKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI 263
            +P    + L+L  QGVFFNA F+ YL+SPK+ HR VGYLEEEA+H+YT  +++I+ G +
Sbjct: 213 CEPGLLMKTLILGAQGVFFNAMFLSYLISPKITHRFVGYLEEEAVHTYTRCIREIEEGHL 272

Query: 264 -----ENVPAPAIAIDYWRLPKDA-TLKDVITVIRADEAHHRDVNHFASDI 308
                E    P +A+ YWR+P+   T+KD+I  IRADEA HR VNH  S++
Sbjct: 273 PKWRDEKFEIPEMAVRYWRMPEGKRTMKDLIHYIRADEAVHRGVNHTLSNL 323


>gi|346978317|gb|EGY21769.1| alternative oxidase [Verticillium dahliae VdLs.17]
          Length = 354

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 93/240 (38%), Positives = 143/240 (59%), Gaps = 31/240 (12%)

Query: 101 PWETY-RADLSIDLKKHHVPTTFLDKVAYRTVKLLR------------------------ 135
           P E Y  AD+   +  H VP T+ D  A++ V++ R                        
Sbjct: 82  PHEGYSEADMLAVVPGHRVPETWGDWAAWKFVRVARWTMDRATGLKPEQQVDKKNPTTAV 141

Query: 136 IPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERM 195
           +  +   + ++  R + LE++A VPGMV GML HL SLR+ +   GWI+ LLEE+ NERM
Sbjct: 142 VANEPLTEAQWLVRFIFLESIAGVPGMVAGMLRHLGSLRRMKRDNGWIETLLEESYNERM 201

Query: 196 HLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYL 255
           HL+T +++ +P W+ +++++  QGVFFN  F+ YL+SPK+ HR VGYLEEEA+H+Y+  +
Sbjct: 202 HLLTFMKMSEPGWFMKVMLIGAQGVFFNGMFLSYLVSPKITHRFVGYLEEEAVHTYSRCI 261

Query: 256 KDIDSGSI-----ENVPAPAIAIDYWRLPKDA-TLKDVITVIRADEAHHRDVNHFASDIQ 309
           ++I+ G +      N   P +A+ YW +P+   T++D+I  IRADEA HR VNH  S++ 
Sbjct: 262 REIEEGQLPKWSDPNFNIPDLAVQYWNIPEGKRTMRDLILYIRADEAVHRGVNHTLSNLN 321


>gi|347832413|emb|CCD48110.1| aox, alternative oxidase [Botryotinia fuckeliana]
          Length = 358

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 92/227 (40%), Positives = 137/227 (60%), Gaps = 33/227 (14%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDL---------------------------FFQRRYGC 148
           H  P  F D+VA   V+ LR  TD                              +R++  
Sbjct: 94  HRKPRDFSDRVALGMVRFLRWCTDFATGYKHNVEAPKKASDSNALTATKPYQMSERKWLI 153

Query: 149 RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKW 208
           R + LE+VA VPGMV GML HL+SLR  +   GWI+ LLEEA NERMHL+T +++ +P  
Sbjct: 154 RYVFLESVAGVPGMVAGMLRHLRSLRGLKRDNGWIETLLEEAYNERMHLLTFLKMYEPGI 213

Query: 209 YERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI----- 263
           + R ++L  QGVFFN+FF+ YL SP+  HR VGYLEEEA+ +YT  ++D+++G +     
Sbjct: 214 FMRTMILGAQGVFFNSFFLCYLFSPRTCHRFVGYLEEEAVLTYTLSIQDLENGHLPKWAD 273

Query: 264 ENVPAPAIAIDYWRLPK-DATLKDVITVIRADEAHHRDVNHFASDIQ 309
            +  AP +A++YW +P+ + +++D++  IRADEA HR+VNH   +++
Sbjct: 274 PDFKAPDLAVEYWGMPEGNRSMRDLLYYIRADEAKHREVNHTLGNLK 320


>gi|451852964|gb|EMD66258.1| hypothetical protein COCSADRAFT_188646 [Cochliobolus sativus
           ND90Pr]
          Length = 357

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 95/217 (43%), Positives = 133/217 (61%), Gaps = 29/217 (13%)

Query: 116 HHVPTTFLDKVAYRTVKLLR------------IPTDL-------------FFQRRYGCRA 150
           H    T  DKVA   VK+LR             P D+               + +Y  R 
Sbjct: 97  HREAKTMSDKVALIAVKVLRWGLDRVTGYKHPKPVDVDAKDPVAARKQFAMTEEKYLIRN 156

Query: 151 MMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYE 210
           + LE+VA VPGMV GML HL S+R+ +   GWI++LLEE+ NERMHL+  +++ +P  + 
Sbjct: 157 VFLESVAGVPGMVAGMLRHLHSMRRMKRDNGWIESLLEESYNERMHLLVFLKMQRPGPFM 216

Query: 211 RMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVP 267
           R++VL  QGVF NA F  YLLSP+  HR +GYLEEEA+ +YT  +KD+D G +   E + 
Sbjct: 217 RLMVLGAQGVFCNALFFAYLLSPRTVHRFIGYLEEEAVITYTRQIKDLDEGRLPKWEKME 276

Query: 268 APAIAIDYWRLPKD-ATLKDVITVIRADEAHHRDVNH 303
           AP IA+DYW++P+   T++D++  IRADE+ HR+VNH
Sbjct: 277 APEIAVDYWQMPEGHRTMRDLLLYIRADESKHREVNH 313


>gi|51701284|sp|Q8J1Z2.1|AOX_GELSS RecName: Full=Alternative oxidase, mitochondrial; Flags: Precursor
 gi|24061746|gb|AAN39884.1| alternative oxidase [Gelasinospora sp. S23]
          Length = 362

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 95/224 (42%), Positives = 136/224 (60%), Gaps = 30/224 (13%)

Query: 115 KHHVPTTFLDKVAYRTVKLLRIPTDL------------------------FFQRRYGCRA 150
           +H  P T  D +A++ V++ R  TD+                          + ++  R 
Sbjct: 100 EHRKPETVGDWLAWKLVRICRWGTDIATGIRPEQQVDKNHPTTATSADKPLTEAQWLVRF 159

Query: 151 MMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYE 210
           + LE++A VPGMV GML HL SLR+ +   GWI+ LLEE+ NERMHL+T +++ +P    
Sbjct: 160 IFLESIAGVPGMVAGMLRHLHSLRRLKRDNGWIETLLEESYNERMHLLTFMKMCEPGLLM 219

Query: 211 RMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSG-----SIEN 265
           + L+L  QGVFFNA F+ YL+SPK+ HR VGYLEEEA+H+YT  +++I+ G     S E 
Sbjct: 220 KTLILGAQGVFFNAMFLSYLVSPKITHRFVGYLEEEAVHTYTRCIREIEEGHLPKWSDER 279

Query: 266 VPAPAIAIDYWRLPKDA-TLKDVITVIRADEAHHRDVNHFASDI 308
              P +A+ YWR+P+   T+KD+I  IRADEA HR VNH  S++
Sbjct: 280 FEIPEMAVRYWRMPEGKRTMKDLIYYIRADEAVHRGVNHTLSNL 323


>gi|429847992|gb|ELA23528.1| alternative oxidase [Colletotrichum gloeosporioides Nara gc5]
          Length = 356

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 95/224 (42%), Positives = 133/224 (59%), Gaps = 30/224 (13%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDL------------------------FFQRRYGCRAM 151
           H VP T  D  A++ V+L R   D                           + ++  R +
Sbjct: 100 HRVPRTVGDWAAWKFVRLARWCMDRATGLGADQQVDKKNPTTALTADKPLTEAQWLVRFI 159

Query: 152 MLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYER 211
            LE++A VPGMV GML HL SLR+ +   GWI+ LLEE+ NERMHL+T +++ +P W+ +
Sbjct: 160 FLESIAGVPGMVAGMLRHLGSLRRMKRDNGWIETLLEESFNERMHLLTFMKMSEPGWFMK 219

Query: 212 MLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSG-----SIENV 266
            ++L  QGVFFN+ F+ YL+SPK+ HR VGYLEEEA+H+YT  + +ID G     S    
Sbjct: 220 TMILGAQGVFFNSMFLSYLVSPKITHRFVGYLEEEAVHTYTRCIHEIDQGLLPKWSDPKF 279

Query: 267 PAPAIAIDYWRLPKD-ATLKDVITVIRADEAHHRDVNHFASDIQ 309
             P IA+ YW++P+   T+KD+I  IRADEA HR VNH  S++ 
Sbjct: 280 EIPDIAVQYWKIPEGHRTMKDLIMYIRADEAVHRGVNHTLSNLN 323


>gi|154313707|ref|XP_001556179.1| alternative oxidase [Botryotinia fuckeliana B05.10]
          Length = 361

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 92/227 (40%), Positives = 137/227 (60%), Gaps = 33/227 (14%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDL---------------------------FFQRRYGC 148
           H  P  F D+VA   V+ LR  TD                              +R++  
Sbjct: 97  HRKPRDFSDRVALGMVRFLRWCTDFATGYKHNVEAPKKASDSNALTATKPYQMSERKWLI 156

Query: 149 RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKW 208
           R + LE+VA VPGMV GML HL+SLR  +   GWI+ LLEEA NERMHL+T +++ +P  
Sbjct: 157 RYVFLESVAGVPGMVAGMLRHLRSLRGLKRDNGWIETLLEEAYNERMHLLTFLKMYEPGI 216

Query: 209 YERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI----- 263
           + R ++L  QGVFFN+FF+ YL SP+  HR VGYLEEEA+ +YT  ++D+++G +     
Sbjct: 217 FMRTMILGAQGVFFNSFFLCYLFSPRTCHRFVGYLEEEAVLTYTLSIQDLENGHLPKWAD 276

Query: 264 ENVPAPAIAIDYWRLPK-DATLKDVITVIRADEAHHRDVNHFASDIQ 309
            +  AP +A++YW +P+ + +++D++  IRADEA HR+VNH   +++
Sbjct: 277 PDFKAPDLAVEYWGMPEGNRSMRDLLYYIRADEAKHREVNHTLGNLK 323


>gi|51701285|sp|Q8NJ59.1|AOX_BOTFU RecName: Full=Alternative oxidase, mitochondrial; Flags: Precursor
 gi|21953239|emb|CAD42731.1| alternative oxidase [Botryotinia fuckeliana]
          Length = 361

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 92/227 (40%), Positives = 137/227 (60%), Gaps = 33/227 (14%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDL---------------------------FFQRRYGC 148
           H  P  F D+VA   V+ LR  TD                              +R++  
Sbjct: 97  HRKPRDFSDRVALGMVRFLRWCTDFATGYKHNVEAPKKASDSNALTATKPYQMSERKWLI 156

Query: 149 RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKW 208
           R + LE+VA VPGMV GML HL+SLR  +   GWI+ LLEEA NERMHL+T +++ +P  
Sbjct: 157 RYVFLESVAGVPGMVAGMLRHLRSLRGLKRDNGWIETLLEEAYNERMHLLTFLKMYEPGI 216

Query: 209 YERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI----- 263
           + R ++L  QGVFFN+FF+ YL SP+  HR VGYLEEEA+ +YT  ++D+++G +     
Sbjct: 217 FMRTMILGAQGVFFNSFFLCYLFSPRTCHRFVGYLEEEAVLTYTLSIQDLENGHLPKWAD 276

Query: 264 ENVPAPAIAIDYWRLPK-DATLKDVITVIRADEAHHRDVNHFASDIQ 309
            +  AP +A++YW +P+ + +++D++  IRADEA HR+VNH   +++
Sbjct: 277 PDFKAPDLAVEYWGMPEGNRSMRDLLYYIRADEAKHREVNHTLGNLK 323


>gi|384252235|gb|EIE25711.1| threonyl-tRNA synthetase [Coccomyxa subellipsoidea C-169]
          Length = 1049

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 97/221 (43%), Positives = 134/221 (60%), Gaps = 14/221 (6%)

Query: 115  KHHVPTTFLDKVAYRTVKLLRIPTDLFF-------QRRYGCRAMMLETVAAVPGMVGGML 167
            +H  P  + +K  +  V  +R   D          + ++  R + LETVA VPGMVGGML
Sbjct: 830  RHKTPEKWSEKTGFWAVTAMRWSFDKITGYGPNMNEGKWLQRIVFLETVAGVPGMVGGML 889

Query: 168  LHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFV 227
             H++SLR  +   GWI  LLEEAENERMHL+T ++L +P    R  VL  QGVFFN +F 
Sbjct: 890  RHMRSLRVMERDHGWIHTLLEEAENERMHLLTFLKLRQPGPLVRAGVLLTQGVFFNLYFF 949

Query: 228  LYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAIDYWRLPKDATL 284
             Y+LSPK  H  +GYLEEEA+ +YT  + DID+G +    + PAP +A  YW++ +DAT+
Sbjct: 950  FYMLSPKHCHAFIGYLEEEAVKTYTHAIADIDNGKLPEWADKPAPDLAKFYWKMSEDATM 1009

Query: 285  KDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
            +D++  +RADEA H  VNH  S++    K+  D P   G H
Sbjct: 1010 RDLLLNVRADEACHSHVNHTFSEL----KQSDDNPFVKGNH 1046


>gi|403416825|emb|CCM03525.1| predicted protein [Fibroporia radiculosa]
          Length = 341

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 101/244 (41%), Positives = 140/244 (57%), Gaps = 31/244 (12%)

Query: 96  WNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDL--------------- 140
           W  F P  T     S+D+  H    +  DK+A+  V+LLR   DL               
Sbjct: 55  WVLFHPVYTQEELKSVDVL-HREAKSVSDKIAWTFVRLLRWGFDLASGYRHKPLPPNYKN 113

Query: 141 ------------FFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLE 188
                         ++++  R + LE++A VPGMV   L HLKSLR  +   GWI  LLE
Sbjct: 114 MSLEALRKGGYIMNEKQWLRRILFLESIAGVPGMVAATLRHLKSLRVMKRDSGWIHTLLE 173

Query: 189 EAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAI 248
           EAENERMHLMT + L KP    R +V+  QGVF+NAFF  YLLSP+  HR VG+LEEEA+
Sbjct: 174 EAENERMHLMTFMVLRKPGIIFRAMVIGAQGVFYNAFFFCYLLSPRTCHRFVGHLEEEAV 233

Query: 249 HSYTEYLKDIDSGSIEN---VPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFA 305
            +Y+  + ++++G + N   +PAP IA DYWRL  +A L DV+  +R+DE+ HR VNH  
Sbjct: 234 LTYSRCIDEVEAGRLPNWSELPAPEIAKDYWRLESNAKLLDVLYAVRSDESTHRFVNHSL 293

Query: 306 SDIQ 309
           ++++
Sbjct: 294 ANLK 297


>gi|320587810|gb|EFX00285.1| alternative oxidase [Grosmannia clavigera kw1407]
          Length = 823

 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 91/218 (41%), Positives = 135/218 (61%), Gaps = 30/218 (13%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDL------------------------FFQRRYGCRAM 151
           H  P T  D++A+R +++ R   D                           + ++  R +
Sbjct: 566 HRPPETMGDRLAWRLIRICRWGMDTATGMSSSQQTDVRKPTTAVVAEKPLTEAQWLIRFI 625

Query: 152 MLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYER 211
            LE++A VPGMV GML HL+S+R+ +   GWI+ LLEE+ NERMHL+T +++ +P  + +
Sbjct: 626 FLESIAGVPGMVAGMLRHLRSIRQLKRDNGWIETLLEESFNERMHLLTFLKMCEPGRFMK 685

Query: 212 MLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIE--NVPA- 268
           +++L  QGV+FNA F+ YL+SP++ HR VGYLEEEA+H+YT  L ++D+G     + PA 
Sbjct: 686 LMILGAQGVYFNAMFLSYLISPRICHRFVGYLEEEAVHTYTRCLAEMDAGGTPLWSDPAF 745

Query: 269 --PAIAIDYWRLPKD-ATLKDVITVIRADEAHHRDVNH 303
             P IA+ YW +P+D  T+KD+I  IRADEA HR VNH
Sbjct: 746 KVPEIAVKYWHMPEDRRTMKDLILYIRADEASHRGVNH 783


>gi|14348862|gb|AAK61349.1|AF363785_1 alternative oxidase [Venturia inaequalis]
          Length = 358

 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 97/214 (45%), Positives = 131/214 (61%), Gaps = 29/214 (13%)

Query: 124 DKVAYRTVKLLRIPTDLF------------------FQRRYG-------CRAMMLETVAA 158
           DKVA   VKLLR   D                     Q+RYG        R + L +VA 
Sbjct: 106 DKVALIAVKLLRWGLDTVSGYKHGKAQALHAQDPQEAQKRYGMTGKQYLVRNVFLXSVAG 165

Query: 159 VPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQ 218
           VPGMV GML HL S+R+ +   GW + LLEE+ NERMHL+  ++L +P W+ R+ VL  Q
Sbjct: 166 VPGMVAGMLRHLHSMRRMKRDHGWXETLLEESYNERMHLLIFLKLYEPGWFMRLAVLGAQ 225

Query: 219 GVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAIDY 275
           GVFFNA F+ YL+SP+  HR VGYLEEEA+ +YT  L D+++G +   E + AP IA+DY
Sbjct: 226 GVFFNAMFLSYLISPRTCHRFVGYLEEEAVVTYTRELADLEAGKLPEWETLAAPDIAVDY 285

Query: 276 WRLPKD-ATLKDVITVIRADEAHHRDVNHFASDI 308
           + LP+   T+KD++  +RADEA HR+VNH   ++
Sbjct: 286 YNLPEGHRTMKDLLLHVRADEAKHREVNHTLGNL 319


>gi|310793332|gb|EFQ28793.1| alternative oxidase [Glomerella graminicola M1.001]
          Length = 355

 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 85/167 (50%), Positives = 117/167 (70%), Gaps = 6/167 (3%)

Query: 149 RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKW 208
           R + LE++A VPGMV GML HL SLR+ +   GWI+ LLEE+ NERMHL+T +++ +P W
Sbjct: 156 RFIFLESIAGVPGMVAGMLRHLGSLRRMRRDNGWIETLLEESFNERMHLLTFMKMSEPGW 215

Query: 209 YERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSG-----SI 263
           + ++++L  QGVFFN  F+ YL++PK+ HR VGYLEEEA+H+YT  L +ID G     S 
Sbjct: 216 FMKVMILGAQGVFFNGMFLSYLVAPKVTHRFVGYLEEEAVHTYTRCLYEIDQGLLPKWSD 275

Query: 264 ENVPAPAIAIDYWRLPKD-ATLKDVITVIRADEAHHRDVNHFASDIQ 309
            N   P IA+ YW++P+   T+KD+I  IRADEA HR VNH   ++ 
Sbjct: 276 PNFVIPDIAVQYWKIPEGHRTMKDLILYIRADEAVHRGVNHTLGNLN 322


>gi|254571053|ref|XP_002492636.1| hypothetical protein [Komagataella pastoris GS115]
 gi|238032434|emb|CAY70457.1| Hypothetical protein PAS_chr3_0408 [Komagataella pastoris GS115]
 gi|328353360|emb|CCA39758.1| hypothetical protein PP7435_Chr3-0805 [Komagataella pastoris CBS
           7435]
          Length = 362

 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 97/241 (40%), Positives = 142/241 (58%), Gaps = 26/241 (10%)

Query: 100 MPWETYRADLSIDLK-KHHVPTTFLDKVAYRTVKLLRIPTDLF----------------- 141
           MP   YR DL   +  +H  PT   DK+A+  ++ LR+  D F                 
Sbjct: 86  MPHHGYRQDLMEKIHYEHREPTLIRDKLAFGLMRSLRVCFDFFSGYKHPKTKEGLEKLTP 145

Query: 142 --FQ---RRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMH 196
             +Q    ++  R ++LE++A VPG V   L HL+SLR  +    +I+ L +EA NERMH
Sbjct: 146 ATYQMTPEKWLTRFIILESIAGVPGSVASFLRHLQSLRLLKRDKAFIQTLQDEAYNERMH 205

Query: 197 LMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLK 256
           L+T +E+ KP  + ++L+   QGVF N FF  Y+L+P   HR VGYLEEEA+++YT  L+
Sbjct: 206 LLTFLEIGKPGPFMKVLLYASQGVFCNLFFFTYMLAPNACHRFVGYLEEEAVYTYTTCLE 265

Query: 257 DIDSG---SIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGK 313
           DI+ G    IE+   P IA DYW L +DA ++D+I+ IRADEA HR+VNH  ++++  G 
Sbjct: 266 DIERGLLPDIEHFKVPKIAKDYWHLSEDAKMRDLISYIRADEAKHREVNHTFANLKLDGT 325

Query: 314 E 314
           +
Sbjct: 326 D 326


>gi|93008053|gb|ABE97458.1| mitochondrial alternative oxidase [Komagataella pastoris]
          Length = 362

 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 97/241 (40%), Positives = 142/241 (58%), Gaps = 26/241 (10%)

Query: 100 MPWETYRADLSIDLK-KHHVPTTFLDKVAYRTVKLLRIPTDLF----------------- 141
           MP   YR DL   +  +H  PT   DK+A+  ++ LR+  D F                 
Sbjct: 86  MPHHGYRQDLMEKIHYEHREPTLIRDKLAFGLMRSLRVCFDFFSGYKHPKTKEGLEKLTP 145

Query: 142 --FQ---RRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMH 196
             +Q    ++  R ++LE++A VPG V   L HL+SLR  +    +I+ L +EA NERMH
Sbjct: 146 ATYQMTPEKWLTRFIILESIAGVPGSVASFLRHLQSLRLLKRDKAFIQTLQDEAYNERMH 205

Query: 197 LMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLK 256
           L+T +E+ KP  + ++L+   QGVF N FF  Y+L+P   HR VGYLEEEA+++YT  L+
Sbjct: 206 LLTFLEIGKPGPFMKVLLYASQGVFCNLFFFTYMLAPNACHRFVGYLEEEAVYTYTTCLE 265

Query: 257 DIDSG---SIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGK 313
           DI+ G    IE+   P IA DYW L +DA ++D+I+ IRADEA HR+VNH  ++++  G 
Sbjct: 266 DIERGLLPDIEHFKVPKIAKDYWHLSEDAKMRDLISYIRADEAKHREVNHTFANLKLDGT 325

Query: 314 E 314
           +
Sbjct: 326 D 326


>gi|328862264|gb|EGG11365.1| hypothetical protein MELLADRAFT_74045 [Melampsora larici-populina
           98AG31]
          Length = 387

 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 85/168 (50%), Positives = 120/168 (71%), Gaps = 3/168 (1%)

Query: 144 RRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVEL 203
           +++  R + LE++A VPGMV  ML H KSLR     GGWI+ LLEEAENERMHL+T +++
Sbjct: 165 QQWMARILFLESIAGVPGMVAAMLRHFKSLRMSGRDGGWIRTLLEEAENERMHLLTFMKI 224

Query: 204 VKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI 263
            +P    R +VL  QGVF N FF+ Y++SP+ AHR VG LEEEA+ +Y+  ++++++G +
Sbjct: 225 RQPGIIFRAMVLGAQGVFANLFFLSYMVSPRAAHRFVGILEEEAVVTYSLAIRELETGRL 284

Query: 264 ---ENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDI 308
              EN+PAP IA DYWRL  DA + DV+  +RADE++HR VNH  ++I
Sbjct: 285 PEWENMPAPQIAKDYWRLLPDAKMIDVLYAVRADESNHRFVNHSLANI 332


>gi|189211215|ref|XP_001941938.1| alternative oxidase, mitochondrial precursor [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187978031|gb|EDU44657.1| alternative oxidase, mitochondrial precursor [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 352

 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 83/165 (50%), Positives = 119/165 (72%), Gaps = 4/165 (2%)

Query: 143 QRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVE 202
           + +Y  R + LE+VA VPGMV GML HL S+R+ +   GWI++LLEE+ NERMHL+  ++
Sbjct: 144 EEKYLIRNVFLESVAGVPGMVAGMLRHLHSMRRMKRDNGWIESLLEESYNERMHLLVFLK 203

Query: 203 LVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGS 262
           + +P  + R++VL  QGVF NA F  YLLSP+  HR +GYLEEEA+ +YT  ++D+D+G 
Sbjct: 204 MQQPGRFMRLMVLGAQGVFCNALFFAYLLSPRTVHRFIGYLEEEAVITYTRQIEDLDAGR 263

Query: 263 I---ENVPAPAIAIDYWRLPK-DATLKDVITVIRADEAHHRDVNH 303
           +   E + AP IAIDYW +P+   T++D++  IRADE+ HR+VNH
Sbjct: 264 LPKWEKMQAPEIAIDYWNMPEGHRTMRDLLLYIRADESKHREVNH 308


>gi|242765090|ref|XP_002340904.1| alternative oxidase AlxA, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218724100|gb|EED23517.1| alternative oxidase AlxA, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 362

 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 81/171 (47%), Positives = 123/171 (71%), Gaps = 4/171 (2%)

Query: 143 QRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVE 202
           +R++  R + LE+VA VPGMV GML HL+SLR  +   GWI+ LLEEA NERMHL+T ++
Sbjct: 154 ERQWLNRVLFLESVAGVPGMVAGMLRHLRSLRTMRRDNGWIETLLEEAYNERMHLLTFMK 213

Query: 203 LVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGS 262
           + +P  + R++VL  QGV+FN  F+ YL+SP+  HR VGYLEEEA+ +YT  +++I++G+
Sbjct: 214 IAEPGLFMRLMVLGAQGVYFNGLFISYLISPRTCHRFVGYLEEEAVLTYTRVIQEIEAGN 273

Query: 263 I---ENVPAPAIAIDYWRLPKD-ATLKDVITVIRADEAHHRDVNHFASDIQ 309
           +   E + AP IA+ YW++P+   ++ D++  +RADEA HR+VNH   ++ 
Sbjct: 274 LPEWEKMEAPEIAVKYWQMPEGHRSMLDLMLYVRADEAKHREVNHTLGNLN 324


>gi|336363765|gb|EGN92138.1| AOX, alternative oxidase mitochondrial precursor [Serpula lacrymans
           var. lacrymans S7.3]
 gi|336382841|gb|EGO23991.1| alternative oxidase, AOX [Serpula lacrymans var. lacrymans S7.9]
          Length = 384

 Score =  177 bits (448), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 86/166 (51%), Positives = 115/166 (69%), Gaps = 3/166 (1%)

Query: 149 RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKW 208
           R + LETVA VPGMV  +L HL SLR  +   GWI  LLEEAENERMHLMT + L KP  
Sbjct: 173 RILFLETVAGVPGMVAAVLRHLGSLRLMRRDSGWIHTLLEEAENERMHLMTFMTLRKPSL 232

Query: 209 YERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---EN 265
           + R +VL  QGVF+N FF+ Y++SP+  HR VGYLEEEA+ +YT  +++I++G +    +
Sbjct: 233 FFRAMVLGAQGVFYNLFFLSYMISPRTCHRFVGYLEEEAVLTYTRCIEEIEAGRLPEWTD 292

Query: 266 VPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQ 311
           + AP IA DYWRL  DA L DV+  +R+DE+ HR VNH  +++  +
Sbjct: 293 LSAPEIAKDYWRLAPDAKLLDVMYAVRSDESTHRFVNHSFANLNVK 338


>gi|169858069|ref|XP_001835681.1| mitochondrial alternative oxidase [Coprinopsis cinerea
           okayama7#130]
 gi|116503357|gb|EAU86252.1| mitochondrial alternative oxidase [Coprinopsis cinerea
           okayama7#130]
          Length = 376

 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 85/164 (51%), Positives = 112/164 (68%), Gaps = 3/164 (1%)

Query: 149 RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKW 208
           R + LE++A VPGMV   L HL+SLR  +   GWI   LEEAENERMHLMT + L KP  
Sbjct: 170 RILFLESIAGVPGMVAATLRHLQSLRLMRRDSGWIHTCLEEAENERMHLMTFMTLRKPSI 229

Query: 209 YERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---EN 265
             R +VL  QGVF+N FF+ Y+ SPK  HR VGYLEEEA+ +YT+ +K+++ G I   E 
Sbjct: 230 AFRAMVLGAQGVFYNLFFLSYIFSPKTCHRFVGYLEEEAVVTYTKCIKELEDGLIPEWEG 289

Query: 266 VPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQ 309
            PAP IAIDYWR+  DA + D++  +R+DE+ HR VNH  +++ 
Sbjct: 290 KPAPEIAIDYWRMSPDAKMIDLLYAVRSDESTHRFVNHSLANLN 333


>gi|301106719|ref|XP_002902442.1| alternative oxidase, putative [Phytophthora infestans T30-4]
 gi|262098316|gb|EEY56368.1| alternative oxidase, putative [Phytophthora infestans T30-4]
          Length = 258

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 99/210 (47%), Positives = 130/210 (61%), Gaps = 15/210 (7%)

Query: 87  TREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFL-DKVAYRTVKLLRIPTDLFFQRR 145
           T E+G P  W   +    Y  D    +++ H P T + ++VAY  V+ LR   D+    R
Sbjct: 45  TSENGEPI-WENPINHAVYDLDKITTMQQTHHPITKMHERVAYLAVQTLRTGFDIVSGYR 103

Query: 146 ----------YGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERM 195
                     +  R + LE+VA VPGMVGGML HL+SLRKF+   GWI  LLEEAENERM
Sbjct: 104 GPGGAMTDKDWVNRCLFLESVAGVPGMVGGMLRHLRSLRKFKRDYGWIHTLLEEAENERM 163

Query: 196 HLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYL 255
           HL+  + + +P ++ R LVL  QGVFFNAFF+ YL+SPK  HR VGYLEEEA+ +YT  L
Sbjct: 164 HLLIFMNIKQPGYFFRTLVLGAQGVFFNAFFLTYLVSPKTCHRFVGYLEEEAVKTYTCLL 223

Query: 256 KDIDSGSIE---NVPAPAIAIDYWRLPKDA 282
           KDI+ G ++      AP IA  Y++LP+DA
Sbjct: 224 KDIEDGHLDAWKEKKAPLIAQTYYKLPEDA 253


>gi|149189352|ref|ZP_01867637.1| alternative oxidase [Vibrio shilonii AK1]
 gi|148836710|gb|EDL53662.1| alternative oxidase [Vibrio shilonii AK1]
          Length = 149

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 86/153 (56%), Positives = 109/153 (71%), Gaps = 4/153 (2%)

Query: 171 KSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYL 230
           K+LR+ +   GWI+ LL+EAENERMHLM  +++ KP W ER++VL  QGVF   + ++YL
Sbjct: 1   KALRRMRDDEGWIRELLDEAENERMHLMIFLDIAKPSWLERLIVLLGQGVFIVVYSIIYL 60

Query: 231 LSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITV 290
           LS K+AHRVVGY EEEA  SYTEYL+ ID G IEN+PAP IAIDY++L  DA L+DV+  
Sbjct: 61  LSSKVAHRVVGYFEEEACKSYTEYLEKIDEGYIENIPAPQIAIDYYQLADDALLRDVVLR 120

Query: 291 IRADEAHHRDVNHFASDIQFQGKELRDAPAPLG 323
           IR DEA HRD NH  +D      E +D P+ L 
Sbjct: 121 IRQDEAGHRDRNHGFAD----AYERKDLPSHLA 149


>gi|440469885|gb|ELQ38976.1| alternative oxidase [Magnaporthe oryzae Y34]
 gi|440482974|gb|ELQ63417.1| alternative oxidase [Magnaporthe oryzae P131]
          Length = 387

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 81/168 (48%), Positives = 118/168 (70%), Gaps = 6/168 (3%)

Query: 148 CRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPK 207
            R + LE++AAVPGMV GML HL SLR+ +   GWI+ LLEEA NERMHL+T +++ +P 
Sbjct: 160 SRFIFLESIAAVPGMVAGMLRHLHSLRRLKRDNGWIETLLEEAYNERMHLLTFLKMCEPG 219

Query: 208 WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---- 263
           W  ++L++  QGV+FNA FV YL+SPK+ HR VGYLEEEA+H+YT  +++++ G +    
Sbjct: 220 WLMKILIIGAQGVYFNAMFVAYLISPKICHRFVGYLEEEAVHTYTRSIEELERGDLPKWS 279

Query: 264 -ENVPAPAIAIDYWRLPKD-ATLKDVITVIRADEAHHRDVNHFASDIQ 309
                 P IA+ YW +P+   T++D++  IRADEA+HR V+H   ++ 
Sbjct: 280 DPKFQVPEIAVSYWGMPEGHRTMRDLLLYIRADEANHRGVHHTLGNLN 327


>gi|389630020|ref|XP_003712663.1| alternative oxidase [Magnaporthe oryzae 70-15]
 gi|51701271|sp|O93788.1|AOX_MAGO7 RecName: Full=Alternative oxidase, mitochondrial; AltName:
           Full=AOXMg; AltName: Full=MgAOX; Flags: Precursor
 gi|12240249|gb|AAG49588.1|AF325683_1 alternative terminal oxidase [Magnaporthe grisea]
 gi|3928513|dbj|BAA34672.1| alternative oxidase [Magnaporthe grisea]
 gi|351644995|gb|EHA52856.1| alternative oxidase [Magnaporthe oryzae 70-15]
          Length = 377

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 81/168 (48%), Positives = 118/168 (70%), Gaps = 6/168 (3%)

Query: 148 CRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPK 207
            R + LE++AAVPGMV GML HL SLR+ +   GWI+ LLEEA NERMHL+T +++ +P 
Sbjct: 150 SRFIFLESIAAVPGMVAGMLRHLHSLRRLKRDNGWIETLLEEAYNERMHLLTFLKMCEPG 209

Query: 208 WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---- 263
           W  ++L++  QGV+FNA FV YL+SPK+ HR VGYLEEEA+H+YT  +++++ G +    
Sbjct: 210 WLMKILIIGAQGVYFNAMFVAYLISPKICHRFVGYLEEEAVHTYTRSIEELERGDLPKWS 269

Query: 264 -ENVPAPAIAIDYWRLPKD-ATLKDVITVIRADEAHHRDVNHFASDIQ 309
                 P IA+ YW +P+   T++D++  IRADEA+HR V+H   ++ 
Sbjct: 270 DPKFQVPEIAVSYWGMPEGHRTMRDLLLYIRADEANHRGVHHTLGNLN 317


>gi|19547976|gb|AAL87459.1| alternative oxidase [Aspergillus fumigatus]
          Length = 149

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 81/149 (54%), Positives = 111/149 (74%), Gaps = 4/149 (2%)

Query: 156 VAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVL 215
           VA VPGMVGGML HL+SLR+ +   GWI+ LLEEA NERMHL+T ++L +P W+ R++VL
Sbjct: 1   VAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLKLAEPGWFMRLMVL 60

Query: 216 TVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIA 272
             QGVFFN FF+ YL+SP+  HR VGYLEEEA+ +YT  +KDI++G +   E + AP IA
Sbjct: 61  GAQGVFFNGFFLSYLISPRTCHRFVGYLEEEAVITYTRAIKDIETGKLPDWEKLDAPEIA 120

Query: 273 IDYWRLPK-DATLKDVITVIRADEAHHRD 300
           + YW +P+    ++D++  +RADEA HR+
Sbjct: 121 VQYWNMPEGQRKMRDLLLYVRADEAKHRE 149


>gi|396466567|ref|XP_003837720.1| similar to alternative oxidase [Leptosphaeria maculans JN3]
 gi|312214283|emb|CBX94276.1| similar to alternative oxidase [Leptosphaeria maculans JN3]
          Length = 356

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 103/289 (35%), Positives = 152/289 (52%), Gaps = 36/289 (12%)

Query: 44  GLRMMVMMSSYSSSSESVPEKVKEKGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWE 103
           GLR   +   Y  ++ S         + GI    ++        R   + WP   +   +
Sbjct: 31  GLRSCFVAIQYCRNAPSGQRHFSSSPQPGI--KDFFEKCATDKVRRTPTAWPHPAYTEEQ 88

Query: 104 TYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDL----------------------- 140
             +  ++     H    T  DK+A   VK+LR   D                        
Sbjct: 89  MNQVQIA-----HREAQTISDKLALVAVKILRWGLDTATGYKHGKAVKLNAKDPEAAKQK 143

Query: 141 --FFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLM 198
               + +Y  R + LE+VA VPGMV GML HL S+R+ +   GWI++LLEE+ NERMHL+
Sbjct: 144 FAMTEEKYLVRNVFLESVAGVPGMVAGMLRHLHSMRRMKRDNGWIESLLEESFNERMHLL 203

Query: 199 TMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDI 258
             +++ KP  + R +VL  QGV+ NA F  YLLSP+  HR VGYLEEEA+ +YT  ++D+
Sbjct: 204 VFLKMQKPGPFMRFMVLVAQGVWCNALFFAYLLSPRTVHRFVGYLEEEAVITYTRQIEDL 263

Query: 259 DSGSI---ENVPAPAIAIDYWRLPKD-ATLKDVITVIRADEAHHRDVNH 303
           D+G +   E + AP IA+DYW +P+   T++D++  IRADE+ HR+VNH
Sbjct: 264 DAGRLPKWEKMEAPEIAVDYWHMPEGRRTMRDLLLYIRADESKHREVNH 312


>gi|388853396|emb|CCF53016.1| related to alternative oxidase precursor, mitochondrial [Ustilago
           hordei]
          Length = 417

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 85/166 (51%), Positives = 109/166 (65%), Gaps = 3/166 (1%)

Query: 149 RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKW 208
           R + LET+A VPGMV     HL+SLR  +   GWI  LL++AENERMHL+T + L KP  
Sbjct: 205 RIIFLETIAGVPGMVAATCRHLQSLRLMKRDKGWIHTLLQDAENERMHLLTFMHLAKPGT 264

Query: 209 YERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---EN 265
             R   L  QGVF+N FF+ YL SP++AHR VG LEEEA+ +Y+  L+DI  G +   EN
Sbjct: 265 IARAFALLAQGVFYNLFFIFYLFSPRIAHRFVGVLEEEAVLTYSCILEDIKQGRLPEWEN 324

Query: 266 VPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQ 311
           VPAP IA  YW+L   A L DVI  +RADEA HR +NH  + + ++
Sbjct: 325 VPAPEIAKHYWQLGDQALLVDVIRAVRADEATHRCINHTLASLDYK 370


>gi|330907160|ref|XP_003295728.1| hypothetical protein PTT_02544 [Pyrenophora teres f. teres 0-1]
 gi|311332743|gb|EFQ96174.1| hypothetical protein PTT_02544 [Pyrenophora teres f. teres 0-1]
          Length = 352

 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 83/165 (50%), Positives = 119/165 (72%), Gaps = 4/165 (2%)

Query: 143 QRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVE 202
           + +Y  R + LE+VA VPGMV GML HL S+R+ +   GWI++LLEE+ NERMHL+  ++
Sbjct: 144 EEKYLIRNVFLESVAGVPGMVAGMLRHLHSMRRMKRDNGWIESLLEESYNERMHLLVFLK 203

Query: 203 LVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGS 262
           + +P  + R++VL  QGV+ NA F  YLLSP+  HR VGYLEEEA+ +YT  ++D+D+G 
Sbjct: 204 MQQPGRFMRLMVLGAQGVWCNALFFAYLLSPRTVHRFVGYLEEEAVITYTRQIEDLDAGR 263

Query: 263 I---ENVPAPAIAIDYWRLPK-DATLKDVITVIRADEAHHRDVNH 303
           +   E + AP IAIDYW +P+   T++D++  IRADE+ HR+VNH
Sbjct: 264 LPKWEKMQAPEIAIDYWNMPEGHRTMRDLLLYIRADESKHREVNH 308


>gi|212528930|ref|XP_002144622.1| alternative oxidase AlxA, putative [Talaromyces marneffei ATCC
           18224]
 gi|210074020|gb|EEA28107.1| alternative oxidase AlxA, putative [Talaromyces marneffei ATCC
           18224]
          Length = 357

 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 81/171 (47%), Positives = 122/171 (71%), Gaps = 4/171 (2%)

Query: 143 QRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVE 202
           +R++  R + LE+VA VPGMV GML HL+SLR  +   GWI+ LLEEA NERMHL+T ++
Sbjct: 149 ERKWLNRILFLESVAGVPGMVAGMLRHLRSLRTMRRDNGWIETLLEEAYNERMHLLTFMK 208

Query: 203 LVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGS 262
           + +P  + R++VL  QGV+FN  F  YL+SP+  HR VGYLEEEA+ +YT  ++++ +G+
Sbjct: 209 IAEPGLFMRVMVLGAQGVYFNGLFFAYLVSPRTCHRFVGYLEEEAVLTYTRIIQELQAGN 268

Query: 263 I---ENVPAPAIAIDYWRLPKD-ATLKDVITVIRADEAHHRDVNHFASDIQ 309
           +   +N+ AP IAI+YW++P+    + D++  +RADEA HR+VNH   ++ 
Sbjct: 269 LPEWQNMEAPEIAINYWKMPEGHRKMLDLMLYVRADEAKHREVNHTLGNLN 319


>gi|406862534|gb|EKD15584.1| hypothetical protein MBM_06212 [Marssonina brunnea f. sp.
           'multigermtubi' MB_m1]
          Length = 355

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 96/253 (37%), Positives = 142/253 (56%), Gaps = 41/253 (16%)

Query: 103 ETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGC-------------- 148
           ET R D+      H  P  F D++A   V+LLR   D   + ++                
Sbjct: 81  ETMRKDI---FYAHRKPEDFSDRIALFMVRLLRFGMDTATRYKHDVEEPKKVGDSNAVAD 137

Query: 149 -------------RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERM 195
                        R + LE+VA VPGMV GM+ HL SLR+ +   GWI+ LLEEA NERM
Sbjct: 138 TKPYRMSEPKWLIRMVFLESVAGVPGMVAGMIRHLHSLRRLRRDNGWIETLLEEAYNERM 197

Query: 196 HLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYL 255
           HL+T +++ +P  + R ++L  QGVFFN+  + YL+SP+  HR VGYLEEEA+ +YT  +
Sbjct: 198 HLLTFMKMAEPGRFMRFMILGAQGVFFNSMVLFYLISPRTCHRFVGYLEEEAVLTYTLAI 257

Query: 256 KDIDSGSI-----ENVPAPAIAIDYWRLPK-DATLKDVITVIRADEAHHRDVNHFASDIQ 309
           KDI++G +          P +A++YW++P+ + T++D++  IRADEA HR+VNH      
Sbjct: 258 KDIEAGKLPKWQDPKFKVPELAVNYWKMPEGNRTMRDLLLYIRADEAKHREVNH-----T 312

Query: 310 FQGKELRDAPAPL 322
           F   + ++ P P 
Sbjct: 313 FGNLDQKEDPNPF 325


>gi|353244382|emb|CCA75783.1| related to alternative oxidase precursor, mitochondrial
           [Piriformospora indica DSM 11827]
          Length = 449

 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 83/164 (50%), Positives = 112/164 (68%), Gaps = 3/164 (1%)

Query: 149 RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKW 208
           R + LET+A VPG    M+ HL+ LR  +  GGWI  LLEEAENERMHLMT + L +   
Sbjct: 237 RILFLETIAGVPGFFAAMIRHLRGLRGMKRDGGWIHTLLEEAENERMHLMTFMTLRQSGI 296

Query: 209 YERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---EN 265
           + R  ++  QGVF NAFF+ YL+SP+  HR VG LEEEA  +YT  ++D+++G +   ++
Sbjct: 297 FFRAFIVAAQGVFANAFFLAYLVSPRTCHRFVGSLEEEATLTYTALIEDMEAGRVPEWKD 356

Query: 266 VPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQ 309
            PAP IAIDYWRL  +ATL DVI  +R+DE  HR VNH  ++++
Sbjct: 357 KPAPGIAIDYWRLKPNATLLDVIYAVRSDETTHRFVNHTLANLK 400


>gi|322711578|gb|EFZ03151.1| Alternative oxidase [Metarhizium anisopliae ARSEF 23]
          Length = 363

 Score =  173 bits (439), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 81/177 (45%), Positives = 119/177 (67%), Gaps = 15/177 (8%)

Query: 148 CRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPK 207
            R + LE++A VPGMVGGML HL SLR+ +   GWI+ LLEE+ NERMHL+T +++ +P 
Sbjct: 154 VRFVFLESIAGVPGMVGGMLRHLSSLRRMKRDNGWIETLLEESYNERMHLLTFMKMCEPG 213

Query: 208 WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIE--- 264
           W+ +++++  QGVFFNA F+ YLL P++ HR VGYLEEEA+H+YT  +++I+ G +    
Sbjct: 214 WFMKLMIIGAQGVFFNALFITYLLHPRIVHRFVGYLEEEAVHTYTRAIREIEDGHLPKWA 273

Query: 265 ----NVPAPAIA-------IDYWRLPK-DATLKDVITVIRADEAHHRDVNHFASDIQ 309
                +P  A+        + YW +P+ + T+KD+I  IRADEA HR VNH   ++ 
Sbjct: 274 DAKFQIPDIAVQGALFSHIVQYWNMPEGNRTMKDLILYIRADEAGHRGVNHTLGNLN 330


>gi|358378712|gb|EHK16393.1| hypothetical protein TRIVIDRAFT_216965 [Trichoderma virens Gv29-8]
          Length = 359

 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 82/167 (49%), Positives = 114/167 (68%), Gaps = 6/167 (3%)

Query: 149 RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKW 208
           R + LE++A VPGMVGGML HL SLR  +   GWI+ LLEE+ NERMHL+T + + +P  
Sbjct: 160 RFVFLESIAGVPGMVGGMLRHLSSLRGMKRDNGWIETLLEESYNERMHLLTFMTMCEPGL 219

Query: 209 YERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI----- 263
           + +++++  QGVFFN+ FV YLL PK+ HR VGYLEEEA+H+YT  + +I+ G +     
Sbjct: 220 FMKLMIIGAQGVFFNSLFVAYLLHPKIVHRFVGYLEEEAVHTYTRAIAEIEEGHLPKWAD 279

Query: 264 ENVPAPAIAIDYWRLPK-DATLKDVITVIRADEAHHRDVNHFASDIQ 309
                P IA+ YW +P+ + T+KD+I  IRADEA HR VNH   ++ 
Sbjct: 280 PKFRIPDIAVQYWNMPEGNRTMKDLILYIRADEASHRGVNHTLGNLN 326


>gi|392577482|gb|EIW70611.1| hypothetical protein TREMEDRAFT_28860 [Tremella mesenterica DSM
           1558]
          Length = 363

 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 92/181 (50%), Positives = 122/181 (67%), Gaps = 3/181 (1%)

Query: 131 VKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEA 190
           ++ LR    L   + +  R ++LE+ A VPGMV G L HL+SLR+ +  GGWI  LLEEA
Sbjct: 127 IEELRAKGLLLSDKAWLMRIILLESFAGVPGMVAGTLRHLRSLRRLRRDGGWIHTLLEEA 186

Query: 191 ENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHS 250
           ENERMHL+T + + +P W  R+ VL  QGV +N  F  YL++PK AHR V  LEEEA+ +
Sbjct: 187 ENERMHLLTFMTIAQPSWLTRVAVLGAQGVMYNLLFATYLITPKTAHRFVAALEEEAVKT 246

Query: 251 YTEYLKDIDSGSI---ENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASD 307
           YT  ++D+  G +   ++VPAP IAIDYWRLP+ A L DVI  +RADEA HR VNH  +D
Sbjct: 247 YTHCVEDMQKGLVPEWDDVPAPQIAIDYWRLPQSAKLIDVIRAVRADEATHRFVNHSLAD 306

Query: 308 I 308
           +
Sbjct: 307 L 307


>gi|358400759|gb|EHK50085.1| hypothetical protein TRIATDRAFT_51260 [Trichoderma atroviride IMI
           206040]
          Length = 359

 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 88/195 (45%), Positives = 125/195 (64%), Gaps = 18/195 (9%)

Query: 148 CRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPK 207
            R + LE++A VPGMVGGML HL+SLR  +   GWI+ LLEE+ NERMHL+T + + +P 
Sbjct: 159 VRFVFLESIAGVPGMVGGMLRHLRSLRGMKRDNGWIETLLEESYNERMHLLTFMTMCEPG 218

Query: 208 WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---- 263
            + +++++  QGVFFN+ FV YLL PK+ HR VGYLEEEA+H+YT  + +I+ G +    
Sbjct: 219 LFMKLMIIGAQGVFFNSLFVAYLLHPKIVHRFVGYLEEEAVHTYTRAIHEIEEGHLPRWT 278

Query: 264 -ENVPAPAIAIDYWRLPKD-ATLKDVITVIRADEAHHRDVNHFASDI-----------QF 310
                 P IA+ YW +P+   T+KD+I  IRADEA HR VNH   ++           +F
Sbjct: 279 DPKFRIPDIAVQYWHMPEGHRTMKDLILYIRADEAGHRGVNHTLGNLNQAEDPNPFVSKF 338

Query: 311 QGKEL-RDAPAPLGY 324
           + +E+ + A  P GY
Sbjct: 339 KDREVPKPALKPQGY 353


>gi|296418840|ref|XP_002839033.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295635027|emb|CAZ83224.1| unnamed protein product [Tuber melanosporum]
          Length = 383

 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 80/169 (47%), Positives = 117/169 (69%), Gaps = 3/169 (1%)

Query: 144 RRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVEL 203
           +++  R + LE++A VPGM  GM+ HL SLR+ +    WI+ LLEEA NER+HL+T +  
Sbjct: 140 QKWLARFIFLESIAGVPGMAAGMIRHLNSLRRLKRDNAWIETLLEEAYNERLHLLTFLHY 199

Query: 204 VKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI 263
            +P  + R ++L  QG+FFN FF+ YL+SP+  HR VGY+EEEA+ +YT  + DI++G I
Sbjct: 200 RQPGLFMRTMILGAQGIFFNLFFISYLVSPRTCHRFVGYIEEEAVITYTRAIADIENGRI 259

Query: 264 ---ENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQ 309
              EN+ AP IAI Y+ L  DA + +++ VIRADEA HR+VNH  +++ 
Sbjct: 260 PEWENLLAPDIAIKYFGLGPDANMLELLKVIRADEAKHREVNHTLANLS 308


>gi|196000520|ref|XP_002110128.1| hypothetical protein TRIADDRAFT_20435 [Trichoplax adhaerens]
 gi|190588252|gb|EDV28294.1| hypothetical protein TRIADDRAFT_20435 [Trichoplax adhaerens]
          Length = 181

 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 88/169 (52%), Positives = 110/169 (65%), Gaps = 3/169 (1%)

Query: 149 RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKW 208
           R + LETVA VPGMV  M  HL SLR+ +   GWI  LLEEAENERMHL+T + L +P  
Sbjct: 7   RIIFLETVAGVPGMVAAMTRHLHSLRRMRRDYGWIHTLLEEAENERMHLLTALHLKRPGP 66

Query: 209 YERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---EN 265
           + R  V+  QG+F N F + YL+SP+  HR VGYLEEEA+ +YT+ L  ID G +     
Sbjct: 67  FFRACVILGQGIFVNFFILSYLISPRFCHRFVGYLEEEAVITYTKCLNQIDRGYLPMWAK 126

Query: 266 VPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKE 314
           + AP IA  YW+L  DA ++DVI  IRADEAHHR VNH  + I  + K 
Sbjct: 127 MDAPDIARTYWQLKPDAKMRDVILAIRADEAHHRLVNHTLASINPEQKN 175


>gi|255943405|ref|XP_002562471.1| Pc18g06440 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211587204|emb|CAP94868.1| Pc18g06440 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 331

 Score =  171 bits (433), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 89/216 (41%), Positives = 133/216 (61%), Gaps = 23/216 (10%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTD-------------------LFFQRRYGCRAMMLETV 156
           H    T+ D+ A  TV+LLR   D                   +  + ++  R + LE+V
Sbjct: 78  HRKAYTWQDRAALGTVRLLRWGMDFVSGYNSRPANTNTLSKAYVMTEEKWITRFVFLESV 137

Query: 157 AAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLT 216
           A VPGMV GML HLKS+R+ +   GWI+ LLEEA NERMHL+T ++L +P    R +VL 
Sbjct: 138 AGVPGMVAGMLRHLKSIRRMRRDNGWIETLLEEAYNERMHLLTFLKLAEPGPAMRFMVLG 197

Query: 217 VQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAI 273
            Q VFF+ F + YL+SP++ HR VGYLEEEA+ +Y++ ++D++ G +   E + AP +AI
Sbjct: 198 AQWVFFSGFSLAYLISPQICHRFVGYLEEEAVITYSKAIRDLEDGHLPAWEGLQAPEMAI 257

Query: 274 DYWRLPK-DATLKDVITVIRADEAHHRDVNHFASDI 308
            YW++P+    ++ ++  +RADEA HRDVNH   ++
Sbjct: 258 KYWQMPEGQRCMRSLLLYVRADEAKHRDVNHTLGNL 293


>gi|150864598|ref|XP_001383483.2| Alternative oxidase, mitochondrial precursor (SHAM-sensitive
           terminal oxidase) (STO1) [Scheffersomyces stipitis CBS
           6054]
 gi|158518684|sp|Q9P414.2|AOX_PICST RecName: Full=Alternative oxidase, mitochondrial; AltName:
           Full=SHAM-sensitive terminal oxidase; Flags: Precursor
 gi|149288858|gb|AAF97475.2| SHAM-sensitive terminal oxidase [Scheffersomyces stipitis]
 gi|149385854|gb|ABN65454.2| Alternative oxidase, mitochondrial precursor (SHAM-sensitive
           terminal oxidase) (STO1) [Scheffersomyces stipitis CBS
           6054]
          Length = 357

 Score =  171 bits (433), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 94/251 (37%), Positives = 142/251 (56%), Gaps = 28/251 (11%)

Query: 86  ITREDGSPWPWNCFMPWETYRADLSIDLK-KHHVPTTFLDKVAYRTVKLLRIPTDL---- 140
           I + D + +  +   P  T+  +  + +  +H  P TF DK+A+R ++L+R   D     
Sbjct: 67  IRKHDDNQFITHPLFPHPTFSQEDCLKVGYEHRPPRTFGDKMAFRGIELVRGSFDFVTGY 126

Query: 141 ------------FFQRRYG-------CRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGG 181
                       F   RY         R + LE++A VPG V   + HL SLR  +    
Sbjct: 127 KKPKTQADIDSGFKGTRYEMTEGKWLTRCIFLESIAGVPGAVASFIRHLHSLRLLKRDKA 186

Query: 182 WIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVG 241
           WI+ LL+EA NERMHL+T +++ KP W+ R ++   QGVF N FF+ YL +PK  HR VG
Sbjct: 187 WIETLLDEAFNERMHLLTFIKIGKPSWFTRTIIYVGQGVFCNLFFLFYLANPKYCHRFVG 246

Query: 242 YLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAIDYW-RLPKDATLKDVITVIRADEAH 297
           YLEEEA+ +YT ++ ++ SG +   EN+  P IA  YW  L +++++ D+I  IRADEA 
Sbjct: 247 YLEEEAVSTYTHFVHELQSGKLPKFENIKIPTIAWQYWPELTENSSMLDLILRIRADEAK 306

Query: 298 HRDVNHFASDI 308
           HR+VNH  +++
Sbjct: 307 HREVNHTLANL 317


>gi|342871326|gb|EGU73992.1| hypothetical protein FOXB_15497 [Fusarium oxysporum Fo5176]
          Length = 345

 Score =  171 bits (432), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 84/165 (50%), Positives = 113/165 (68%), Gaps = 10/165 (6%)

Query: 149 RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKW 208
           R + LE++A VPGMVGGML HL SLR+ +   GWI+ LLEE+ NERMHL+T +++ +P W
Sbjct: 142 RFIFLESIAGVPGMVGGMLRHLSSLRRMKRDNGWIETLLEESYNERMHLLTFMKMCEPGW 201

Query: 209 YERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSG-----SI 263
           + +++++  QGVFFN  FV YL SPK+ HR VGYLEEEA+H+YT  +K+I+ G     S 
Sbjct: 202 FMKVMIIGAQGVFFNGLFVCYLFSPKIVHRFVGYLEEEAVHTYTRCIKEIEEGHLPKWSD 261

Query: 264 ENVPAPAIAIDYWRLPKDA-----TLKDVITVIRADEAHHRDVNH 303
            +   P IAI  + L   +     T+KD+I  IRADEA HR VNH
Sbjct: 262 PSFRIPDIAIQVFGLHLQSTFGVHTMKDLILYIRADEAVHRGVNH 306


>gi|238492127|ref|XP_002377300.1| alternative oxidase AlxA, putative [Aspergillus flavus NRRL3357]
 gi|220695794|gb|EED52136.1| alternative oxidase AlxA, putative [Aspergillus flavus NRRL3357]
          Length = 320

 Score =  170 bits (431), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 94/232 (40%), Positives = 139/232 (59%), Gaps = 32/232 (13%)

Query: 124 DKVAYRTVKLLRIPTDL------------------FFQRRYGCRAMMLETVAAVPGMVGG 165
           D++A  TV+ LR   DL                    + ++  R + LE+VA VPGMV  
Sbjct: 83  DRMALGTVRFLRWGMDLVTGYHHSHPRDAHSPRFRMTEEKWITRFIFLESVAGVPGMVAA 142

Query: 166 MLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAF 225
           ML HLKSLR+ +   GWI+ LLEEA NERMHL+T ++L +P      +VL  Q VFF  F
Sbjct: 143 MLRHLKSLRRMRRDYGWIETLLEEAYNERMHLLTFLKLSQPGPAMYFMVLAAQCVFFTGF 202

Query: 226 FVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAIDYWRLPK-D 281
            + YL+SP++ HR VGYLEEEA+ +YT+ ++++D G++    N+ APA+AI YW++P+  
Sbjct: 203 SLAYLISPRICHRFVGYLEEEAVITYTKAIQELDKGNLPLWSNMEAPAMAIKYWQMPEGQ 262

Query: 282 ATLKDVITVIRADEAHHRDVNHFASDIQ-------FQGK---ELRDAPAPLG 323
            +++ ++  +RADEA+HRDVNH   ++        F  K    L++A  PL 
Sbjct: 263 RSIRSLLLCVRADEANHRDVNHTLGNLNQDSDPNPFSAKFRNALKEASQPLS 314


>gi|391865057|gb|EIT74348.1| alternative oxidase AlxA, putative [Aspergillus oryzae 3.042]
          Length = 320

 Score =  170 bits (431), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 94/232 (40%), Positives = 139/232 (59%), Gaps = 32/232 (13%)

Query: 124 DKVAYRTVKLLRIPTDL------------------FFQRRYGCRAMMLETVAAVPGMVGG 165
           D++A  TV+ LR   DL                    + ++  R + LE+VA VPGMV  
Sbjct: 83  DRMALGTVRFLRWGMDLVTGYHHSHPRDAHSPRFRMTEEKWITRFIFLESVAGVPGMVAA 142

Query: 166 MLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAF 225
           ML HLKSLR+ +   GWI+ LLEEA NERMHL+T ++L +P      +VL  Q VFF  F
Sbjct: 143 MLRHLKSLRRMRRDYGWIETLLEEAYNERMHLLTFLKLSQPGPAMYFMVLAAQCVFFTGF 202

Query: 226 FVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAIDYWRLPK-D 281
            + YL+SP++ HR VGYLEEEA+ +YT+ ++++D G++    N+ APA+AI YW++P+  
Sbjct: 203 SLAYLISPRICHRFVGYLEEEAVITYTKAIQELDKGNLPLWSNMEAPAMAIKYWQMPEGQ 262

Query: 282 ATLKDVITVIRADEAHHRDVNHFASDIQ-------FQGK---ELRDAPAPLG 323
            +++ ++  +RADEA+HRDVNH   ++        F  K    L++A  PL 
Sbjct: 263 RSIRSLLLCVRADEANHRDVNHTLGNLNQDSDPNPFSAKFRNALKEASQPLS 314


>gi|50551827|ref|XP_503388.1| YALI0E00814p [Yarrowia lipolytica]
 gi|51701283|sp|Q8J0I8.1|AOX_YARLI RecName: Full=Alternative oxidase, mitochondrial; Flags: Precursor
 gi|27263058|emb|CAD21442.1| alternative oxidase [Yarrowia lipolytica]
 gi|49649257|emb|CAG78967.1| YALI0E00814p [Yarrowia lipolytica CLIB122]
          Length = 353

 Score =  170 bits (431), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 91/210 (43%), Positives = 125/210 (59%), Gaps = 21/210 (10%)

Query: 115 KHHVPTTFLDKVAYRTVKLLRIPTDL------------------FFQRRYGCRAMMLETV 156
            H    TF D+VA R + L+RI  DL                     R++  R + LE++
Sbjct: 100 NHRKTETFSDRVALRAILLMRIIFDLCTGYKHPKEGEAHLPKFRMTTRQWLDRFLFLESI 159

Query: 157 AAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLT 216
           A VPGMV GM+ HL SLR  +    WI++L+EEA NERMHL+T ++L KP    R  +L 
Sbjct: 160 AGVPGMVAGMIRHLHSLRALRRDRAWIESLVEEAYNERMHLLTFLKLQKPSVQMRTGLLI 219

Query: 217 VQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSG---SIENVPAPAIAI 273
            Q +F+N FF+ YL+SP   HR VGYLEEEA+ +YT  L+DID+G    + ++  P IA 
Sbjct: 220 GQIIFYNLFFISYLISPATCHRFVGYLEEEAVITYTRCLEDIDAGRLPELASMEVPDIAR 279

Query: 274 DYWRLPKDATLKDVITVIRADEAHHRDVNH 303
            YW +  D T++D+I  +RADEA H +VNH
Sbjct: 280 TYWHMEDDCTMRDLIQYVRADEAKHCEVNH 309


>gi|83774462|dbj|BAE64585.1| unnamed protein product [Aspergillus oryzae RIB40]
          Length = 310

 Score =  170 bits (431), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 88/208 (42%), Positives = 131/208 (62%), Gaps = 22/208 (10%)

Query: 124 DKVAYRTVKLLRIPTDL------------------FFQRRYGCRAMMLETVAAVPGMVGG 165
           D++A  TV+ LR   DL                    + ++  R + LE+VA VPGMV  
Sbjct: 83  DRMALGTVRFLRWGMDLVTGYHHSHPRDAHSPRFRMTEEKWITRFIFLESVAGVPGMVAA 142

Query: 166 MLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAF 225
           ML HLKSLR+ +   GWI+ LLEEA NERMHL+T ++L +P      +VL  Q VFF  F
Sbjct: 143 MLRHLKSLRRMRRDYGWIETLLEEAYNERMHLLTFLKLSQPGPAMYFMVLAAQCVFFTGF 202

Query: 226 FVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAIDYWRLPK-D 281
            + YL+SP++ HR VGYLEEEA+ +YT+ ++++D G++    N+ APA+AI YW++P+  
Sbjct: 203 SLAYLISPRICHRFVGYLEEEAVITYTKAIQELDKGNLPLWSNMEAPAMAIKYWQMPEGQ 262

Query: 282 ATLKDVITVIRADEAHHRDVNHFASDIQ 309
            +++ ++  +RADEA+HRDVNH   ++ 
Sbjct: 263 RSIRSLLLCVRADEANHRDVNHTLGNLN 290


>gi|62241308|dbj|BAD93711.1| alternative oxidase 1b [Candida maltosa]
          Length = 348

 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 82/175 (46%), Positives = 117/175 (66%), Gaps = 6/175 (3%)

Query: 145 RYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELV 204
           ++  R + LE+VA VPG V G L HL SLR  +    WI+ L +EA NERMHL+T +++ 
Sbjct: 140 KWMTRCIFLESVAGVPGSVAGFLRHLHSLRMLRRDKAWIETLYDEAYNERMHLLTFIKIG 199

Query: 205 KPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSG--- 261
           KP W+ R ++   QGVF N FF+LYLL+P+  HR VGYLEEEA+ +YT  +++ID+    
Sbjct: 200 KPSWFTRSIIYVGQGVFTNVFFLLYLLNPRYCHRFVGYLEEEAVRTYTHLIEEIDTKGKL 259

Query: 262 -SIENVPAPAIAIDYW-RLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKE 314
              EN+  P IA+ YW  L  ++T +D+I  IRADEA HR+VNH  ++++ Q K+
Sbjct: 260 PGFENMKIPEIAVQYWPELTPESTFRDLILRIRADEAKHREVNHTFANLE-QAKD 313


>gi|33327042|gb|AAQ08895.1| SHAM-sensitive alternative terminal oxidase isozyme I [Yarrowia
           lipolytica]
          Length = 341

 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 90/204 (44%), Positives = 124/204 (60%), Gaps = 21/204 (10%)

Query: 121 TFLDKVAYRTVKLLRIPTDL------------------FFQRRYGCRAMMLETVAAVPGM 162
           TF D+VA R + L+RI  DL                     R++  R + LE++A VPGM
Sbjct: 94  TFSDRVALRAILLMRIIFDLCTGYKHPKEGEAHLPKFRMTTRQWLDRFLFLESIAGVPGM 153

Query: 163 VGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFF 222
           V GM+ HL SLR  +    WI++L+EEA NERMHL+T ++L KP    R  +L  Q +F+
Sbjct: 154 VAGMIRHLHSLRALRRDRAWIESLVEEAYNERMHLLTFLKLQKPSVQMRTGLLIGQIIFY 213

Query: 223 NAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPA---PAIAIDYWRLP 279
           N FF+ YL+SP   HR VGYLEEEA+ +YT  L+DID+G +  + +   P IA  YW + 
Sbjct: 214 NLFFISYLISPATCHRFVGYLEEEAVITYTRCLEDIDAGRLPELASMEVPDIARTYWHME 273

Query: 280 KDATLKDVITVIRADEAHHRDVNH 303
            D T++D+I  +RADEA H +VNH
Sbjct: 274 DDCTMRDLIQYVRADEAKHCEVNH 297


>gi|159490736|ref|XP_001703329.1| alternative oxidase [Chlamydomonas reinhardtii]
 gi|9930474|gb|AAG02081.1|AF285187_1 alternative oxidase [Chlamydomonas reinhardtii]
 gi|11245482|gb|AAG33634.1|AF314255_1 alternative oxidase 2 [Chlamydomonas reinhardtii]
 gi|158280253|gb|EDP06011.1| alternative oxidase [Chlamydomonas reinhardtii]
          Length = 347

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 91/217 (41%), Positives = 126/217 (58%), Gaps = 14/217 (6%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDLFF-------QRRYGCRAMMLETVAAVPGMVGGMLL 168
           H  P     ++ +R +   R   D          + ++  R + LET+A VPGMV G+L 
Sbjct: 131 HITPERLYQRIGFRAIMAARWTFDKLTGYGPNMTEAKWLQRMIFLETIAGVPGMVAGVLR 190

Query: 169 HLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVL 228
           HLKSLR  +   GWI  LL+EAENERMHL+T  EL KP    R  ++  QGVF+N +F+ 
Sbjct: 191 HLKSLRSMKRDHGWIHTLLQEAENERMHLLTFFELRKPGPLFRASIIVAQGVFWNLYFIG 250

Query: 229 YLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI-ENVPAPAIAIDYWRLPKDATLKDV 287
           YL+SP+  H  VG+LEEEA+ +YT  L++ID+G + +   AP IA +YW L   A+++D+
Sbjct: 251 YLVSPRTCHAAVGFLEEEAVKTYTHALQEIDAGRLWKGKVAPPIACEYWGLKPGASMRDL 310

Query: 288 ITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGY 324
           I  +RADEA H  VNH  S +         AP P  Y
Sbjct: 311 ILAVRADEACHAHVNHTLSGLP------ATAPNPFAY 341


>gi|388582970|gb|EIM23273.1| alternative oxidase, partial [Wallemia sebi CBS 633.66]
          Length = 401

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 81/172 (47%), Positives = 117/172 (68%), Gaps = 3/172 (1%)

Query: 143 QRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVE 202
           ++++  R + LE+VA VPG V  ML HL+SLR+    GG+I  LL EAENERMHLM+ + 
Sbjct: 177 EKQWLRRFIFLESVAGVPGFVASMLRHLRSLRRMDRDGGYINMLLAEAENERMHLMSFLA 236

Query: 203 LVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGS 262
           + KP  + R +VL  QGVFFN FFV YL++PK+ HR    LEEEA+ +YT  +K+I +G 
Sbjct: 237 VEKPSIWMRAMVLGAQGVFFNLFFVSYLINPKICHRFTAVLEEEAVVTYTRAMKEIKAGY 296

Query: 263 I---ENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQ 311
           +   ++   P+IA  YW+LP D+T+ D++ V+RADE++HR  NH  S++   
Sbjct: 297 VPGWKHKEIPSIARGYWQLPADSTMLDLVMVVRADESNHRFTNHTLSELDLN 348


>gi|344232988|gb|EGV64861.1| hypothetical protein CANTEDRAFT_104081 [Candida tenuis ATCC 10573]
          Length = 312

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 92/248 (37%), Positives = 137/248 (55%), Gaps = 32/248 (12%)

Query: 85  KITREDGSPWPWNCFMPWETY------RADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPT 138
           K+T+E   P   N F+   T+      +A+L      H VP T  DK+A   ++  R   
Sbjct: 25  KLTKE---PKFDNSFITHPTFQHPKEEKAELESISFDHRVPITVSDKIASGAIQTFRSCF 81

Query: 139 DLFF-------------------QRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHS 179
           D F                    + ++  R + LE+VA +PGM    + HL SLR  +  
Sbjct: 82  DFFTGYKHPTKGVSYEGTRFEMTESKWLTRCIFLESVAGIPGMTAAFIRHLHSLRLLKRD 141

Query: 180 GGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRV 239
             WI+ LL+EA NER+HL+T + L KP W+ R  +   QGVF N FF  YL  PK  HR 
Sbjct: 142 KAWIETLLDEAYNERIHLLTFINLGKPSWFTRFFIFMGQGVFCNIFFFNYLFFPKFCHRF 201

Query: 240 VGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAIDYW-RLPKDATLKDVITVIRADE 295
           VGYLEEEA+ +Y+ ++K++D+G +   +++  P +AI Y+  L + +T++D+I  +RADE
Sbjct: 202 VGYLEEEAVSTYSHFIKELDAGKLKKFDDMAIPPVAIQYYGTLDEKSTIRDLILCVRADE 261

Query: 296 AHHRDVNH 303
           A HR+VNH
Sbjct: 262 AKHREVNH 269


>gi|256674265|gb|ACV04930.1| mitochondrial alternative oxidase [Blastocystis sp. Nand II]
          Length = 304

 Score =  168 bits (425), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 87/194 (44%), Positives = 122/194 (62%), Gaps = 3/194 (1%)

Query: 114 KKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSL 173
           K+H  P    D+VA   V  L    + +F+  Y  RA+ LE+VA++PG+V   L HL+ L
Sbjct: 73  KRH--PKGVSDRVASGIVNALFKIGNAYFRENYILRAVFLESVASIPGLVCSNLHHLRCL 130

Query: 174 RKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSP 233
           R+ Q    WIK L++EAENERMHL+ +    K    +++ +   Q  F   F  L++ +P
Sbjct: 131 RRLQ-PDSWIKPLVDEAENERMHLLAVRTYTKLTAVQKLFIRITQFSFVTLFSFLFVFAP 189

Query: 234 KLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRA 293
           + +HR+VG+LEE A+ SYTE ++ IDS ++EN PA  I  DYW LP+DATL+D + VIRA
Sbjct: 190 RTSHRLVGFLEEHAVDSYTEMIRRIDSNTLENRPATQITKDYWGLPEDATLRDALLVIRA 249

Query: 294 DEAHHRDVNHFASD 307
           DEA HR VNH   D
Sbjct: 250 DEADHRLVNHSLGD 263


>gi|317157513|ref|XP_001825718.2| alternative oxidase [Aspergillus oryzae RIB40]
          Length = 226

 Score =  168 bits (425), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 80/171 (46%), Positives = 120/171 (70%), Gaps = 4/171 (2%)

Query: 143 QRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVE 202
           + ++  R + LE+VA VPGMV  ML HLKSLR+ +   GWI+ LLEEA NERMHL+T ++
Sbjct: 36  EEKWITRFIFLESVAGVPGMVAAMLRHLKSLRRMRRDYGWIETLLEEAYNERMHLLTFLK 95

Query: 203 LVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGS 262
           L +P      +VL  Q VFF  F + YL+SP++ HR VGYLEEEA+ +YT+ ++++D G+
Sbjct: 96  LSQPGPAMYFMVLAAQCVFFTGFSLAYLISPRICHRFVGYLEEEAVITYTKAIQELDKGN 155

Query: 263 I---ENVPAPAIAIDYWRLPK-DATLKDVITVIRADEAHHRDVNHFASDIQ 309
           +    N+ APA+AI YW++P+   +++ ++  +RADEA+HRDVNH   ++ 
Sbjct: 156 LPLWSNMEAPAMAIKYWQMPEGQRSIRSLLLCVRADEANHRDVNHTLGNLN 206


>gi|71016790|ref|XP_758921.1| hypothetical protein UM02774.1 [Ustilago maydis 521]
 gi|46098452|gb|EAK83685.1| hypothetical protein UM02774.1 [Ustilago maydis 521]
          Length = 448

 Score =  167 bits (424), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 87/163 (53%), Positives = 110/163 (67%), Gaps = 5/163 (3%)

Query: 149 RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELV-KPK 207
           R + LE++A VPGMV     HL+SLR  +   GWI  +LE+AENERMHL+  + L  KP 
Sbjct: 233 RMIFLESIAGVPGMVAATCRHLQSLRLMRRDKGWIHTMLEDAENERMHLLVALHLSGKPG 292

Query: 208 WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---E 264
              R  VL  QGVF+N FF+ YLLSP++AHR VG LEEEA+ +Y+  L+D+  G +   E
Sbjct: 293 LIARTFVLLAQGVFYNFFFIFYLLSPRVAHRFVGVLEEEAVLTYSLILEDLKEGRLPEWE 352

Query: 265 NVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNH-FAS 306
           +VPAP IA  YW+L  +A L DVI  IRADEA HR +NH FAS
Sbjct: 353 DVPAPEIAKQYWQLGDEAMLVDVIRAIRADEATHRHINHTFAS 395


>gi|255728095|ref|XP_002548973.1| alternative oxidase 1, mitochondrial precursor [Candida tropicalis
           MYA-3404]
 gi|240133289|gb|EER32845.1| alternative oxidase 1, mitochondrial precursor [Candida tropicalis
           MYA-3404]
          Length = 379

 Score =  167 bits (423), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 90/240 (37%), Positives = 131/240 (54%), Gaps = 36/240 (15%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGC-----------------------RAMM 152
           H  P T  DK++Y      R   D  F   Y C                       R + 
Sbjct: 121 HRPPVTLGDKISYYGTMTARKCFD--FVTGYACPLPDKPHMYDGTRWEMTEGKWMTRVIF 178

Query: 153 LETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERM 212
           LE+VA VPG V G + HL SLR       WI++L +EA NERMHL+T +++ KP W+ R 
Sbjct: 179 LESVAGVPGSVAGFIRHLHSLRMLTRDKAWIESLQDEAYNERMHLLTFIKIGKPSWFTRT 238

Query: 213 LVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDS----GSIENVPA 268
           ++   QGVF N FF LYL++P+  HR VGYLEEEA+ +YT  L ++D      + +N+  
Sbjct: 239 IIYIGQGVFTNIFFFLYLMNPRYCHRFVGYLEEEAVRTYTHLLDELDKPGKLPNFQNMQI 298

Query: 269 PAIAIDYW-RLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGK------ELRDAPAP 321
           P IA+DYW  L ++++ KD++ +IRADE+ HR+VNH  +++           +++D P P
Sbjct: 299 PTIAVDYWPSLSEESSFKDLVAIIRADESKHREVNHTLANLDTWKDRNPFALQIKDDPNP 358


>gi|3023301|sp|Q00912.1|AOX_HANAN RecName: Full=Alternative oxidase, mitochondrial; Flags: Precursor
 gi|218523|dbj|BAA00641.1| unnamed protein product [Pichia anomala]
 gi|6978940|dbj|BAA90763.1| alternative oxidase [Pichia anomala]
 gi|445371|prf||1909185A alternative oxidase
          Length = 342

 Score =  167 bits (422), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 88/221 (39%), Positives = 126/221 (57%), Gaps = 27/221 (12%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDL-----------------------FFQRRYGCRAMM 152
           H  P T  DK+A R VK  R   D                          + ++  R + 
Sbjct: 81  HREPKTIGDKIADRGVKFCRASFDFVTGYKKPKDVNGMLKSWEGTRYEMTEEKWLTRCIF 140

Query: 153 LETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERM 212
           LE+VA VPGMV   + HL SLR  +    WI+ LL+EA NERMHL+T +++  P W+ R 
Sbjct: 141 LESVAGVPGMVAAFIRHLHSLRLLKRDKAWIETLLDEAYNERMHLLTFIKIGNPSWFTRF 200

Query: 213 LVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAP 269
           ++   QGVF N FF++YL+ P+  HR VGYLEEEA+ +YT  +KDIDS  +   ++V  P
Sbjct: 201 IIYMGQGVFANLFFLVYLIKPRYCHRFVGYLEEEAVSTYTHLIKDIDSKRLPKFDDVNLP 260

Query: 270 AIAIDYWR-LPKDATLKDVITVIRADEAHHRDVNHFASDIQ 309
            I+  YW  L + +T +D+I  IRADE+ HR+VNH  ++++
Sbjct: 261 EISWLYWTDLNEKSTFRDLIQRIRADESKHREVNHTLANLE 301


>gi|118384865|ref|XP_001025571.1| Alternative oxidase family protein [Tetrahymena thermophila]
 gi|89307338|gb|EAS05326.1| Alternative oxidase family protein [Tetrahymena thermophila SB210]
          Length = 322

 Score =  167 bits (422), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 98/231 (42%), Positives = 137/231 (59%), Gaps = 23/231 (9%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDLF--------FQRRYG--------CRAMMLETVAAV 159
           H  P    D++++  ++ +R+  D+         +Q++ G         R + LETVA V
Sbjct: 92  HFKPKNIGDRLSHYLIQSMRLGFDVMSGYKKVFPWQQKSGELTERGWLNRMVFLETVAGV 151

Query: 160 PGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQG 219
           PG V  M  HL+SLR+ +   GWI  LLEEAENERMHL+T +++ KP    R+ V++ Q 
Sbjct: 152 PGFVAAMHRHLRSLRRMERDYGWIHVLLEEAENERMHLLTFLKVQKPTLLFRLGVISAQF 211

Query: 220 VFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDID--SGSI---ENVPAPAIAID 274
            +   F +LY   P++ HR+VGYLEEEA+ +YT  ++ I+  + SI   +   AP IAID
Sbjct: 212 NYVLMFGLLYQFFPRVCHRIVGYLEEEAVKTYTHCIEVINQENSSISHWKTKKAPQIAID 271

Query: 275 YWRLPKDATLKDVITVIRADEAHHRDVNH-FASDIQFQGKELRDAPAPLGY 324
           YWRLP++AT++DVI  IR DE HHRDVNH  ASD   Q K L D      Y
Sbjct: 272 YWRLPENATMEDVIYAIRKDEEHHRDVNHDLASDYS-QTKVLADTTQDEHY 321


>gi|8676907|gb|AAF70262.2| alternative oxidase [Podospora anserina]
          Length = 146

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 76/146 (52%), Positives = 111/146 (76%), Gaps = 4/146 (2%)

Query: 158 AVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTV 217
            VPGMV GML HL+SLRK +   GWI+ LLEEA NERMHL+T ++L +P W+ R++V+  
Sbjct: 1   GVPGMVAGMLRHLRSLRKMKRDNGWIETLLEEAFNERMHLLTFLKLAEPGWFMRVMVIGA 60

Query: 218 QGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAID 274
           QGVFFN FF+ YL+SP++ HR VGYLEEEA+ +YT  ++++++G++   +++ AP IA+ 
Sbjct: 61  QGVFFNGFFLSYLISPRICHRFVGYLEEEAVITYTRAIEELEAGNLPEWKDLDAPEIAVK 120

Query: 275 YWRLPK-DATLKDVITVIRADEAHHR 299
           YW++P+    +KD++  IRADEA HR
Sbjct: 121 YWQMPEGQRKMKDLLLFIRADEAKHR 146


>gi|241949569|ref|XP_002417507.1| alternative oxidase 2, mitochondrial precursor, putative [Candida
           dubliniensis CD36]
 gi|223640845|emb|CAX45160.1| alternative oxidase 2, mitochondrial precursor, putative [Candida
           dubliniensis CD36]
          Length = 366

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 87/220 (39%), Positives = 127/220 (57%), Gaps = 26/220 (11%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDL---------------------FFQRRYGCRAMMLE 154
           H    T +DK+++R+++ +R   DL                       + ++  R + LE
Sbjct: 108 HRETKTLVDKISFRSIQFMRQCFDLVTGYAVPKTNNPDEFKGTRWEMTEGKWLTRCIFLE 167

Query: 155 TVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLV 214
           +VA VPG V G L HL SLR  +    WI+ LL+EA NERMHL+T +++ KP W  R ++
Sbjct: 168 SVAGVPGSVAGFLRHLHSLRMLRRDKAWIETLLDEAYNERMHLLTFIKIGKPSWLTRSII 227

Query: 215 LTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDI----DSGSIENVPAPA 270
              QGVF N FF+LYLL+P+  HR VGYLEEEA+ +Y+  L ++       S E +  P 
Sbjct: 228 YIGQGVFTNVFFLLYLLNPRYCHRFVGYLEEEAVRTYSHLLDEMAIPGKLPSFETMKIPE 287

Query: 271 IAIDYW-RLPKDATLKDVITVIRADEAHHRDVNHFASDIQ 309
           +AI YW  L   ++ KD+I  IRADEA HR+VNH  ++++
Sbjct: 288 VAIQYWPELTSKSSFKDLILRIRADEAKHREVNHTFANLE 327


>gi|448091414|ref|XP_004197325.1| Piso0_004572 [Millerozyma farinosa CBS 7064]
 gi|448095979|ref|XP_004198356.1| Piso0_004572 [Millerozyma farinosa CBS 7064]
 gi|359378747|emb|CCE85006.1| Piso0_004572 [Millerozyma farinosa CBS 7064]
 gi|359379778|emb|CCE83975.1| Piso0_004572 [Millerozyma farinosa CBS 7064]
          Length = 346

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 99/288 (34%), Positives = 156/288 (54%), Gaps = 36/288 (12%)

Query: 54  YSSSSESVPEKVKEKGENGIVPSSYWGISRPKITREDGSPWPWNCFM-----PWETYRAD 108
           YS+S+ + P+   E+     V     G+S   I + +   +  N F+     P   +  +
Sbjct: 22  YSTSAVARPQ---ERAAAEAVQPPGIGLSTKLIDKSESHLYNDNAFLTEPMFPHPGFGLE 78

Query: 109 LSIDLK-KHHVPTTFLDKVAYRTVKLLRIPTDL----------------FFQRRYG---- 147
            + +++  H VP T  DK+ Y+ ++ +R   D                 F   RY     
Sbjct: 79  ETKNIEYSHRVPDTMGDKITYKAIQFVRWSFDFVTGYKKPHTPEEKLHSFAGTRYEMNEG 138

Query: 148 ---CRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELV 204
               R + LE+VA VPGMV   + HL SLR  +    WI+ LL+EA NERMHL+T ++L 
Sbjct: 139 KWLTRVIFLESVAGVPGMVAAFIRHLHSLRLLKRDKAWIETLLDEAYNERMHLLTFMKLG 198

Query: 205 KPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI- 263
           +P W+ +++V   QGVF N FF  YL++PK  HR VGYLEEEA+ +Y+  L ++D+G + 
Sbjct: 199 RPSWFTKLIVYIGQGVFCNLFFFAYLVNPKYCHRFVGYLEEEAVSTYSHLLDELDAGKLP 258

Query: 264 --ENVPAPAIAIDYW-RLPKDATLKDVITVIRADEAHHRDVNHFASDI 308
             + V  P I+  YW  L + ++  D++++IRADEA HR+VNH  +++
Sbjct: 259 RFDEVKIPEISWHYWTELNEHSSFHDLVSLIRADEAKHREVNHTLANL 306


>gi|255728097|ref|XP_002548974.1| alternative oxidase 1, mitochondrial precursor [Candida tropicalis
           MYA-3404]
 gi|240133290|gb|EER32846.1| alternative oxidase 1, mitochondrial precursor [Candida tropicalis
           MYA-3404]
          Length = 361

 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 86/220 (39%), Positives = 128/220 (58%), Gaps = 26/220 (11%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDLFF---------------------QRRYGCRAMMLE 154
           H  P TF DK++Y+ +  +R   D F                      + ++  R + LE
Sbjct: 103 HREPRTFGDKLSYKGIHYVRKIFDFFTGYADPSPSNPNQYVGTRYEMTEGKWMTRCIFLE 162

Query: 155 TVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLV 214
           +VA VPG V G + HL SLR  +    WI+ L +EA NERMHL+T +++ KP W+ R ++
Sbjct: 163 SVAGVPGSVAGFIRHLHSLRMLKRDKAWIETLHDEAYNERMHLLTFIKIGKPSWFTRSII 222

Query: 215 LTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDI-DSGSIEN---VPAPA 270
              QGVF N FF LYLL+P+  HR VGYLEEEA+ +YT  L+++ + G + N   +  P 
Sbjct: 223 YVGQGVFTNVFFFLYLLNPRYCHRFVGYLEEEAVRTYTHLLEELKEPGKLPNFQKMKIPT 282

Query: 271 IAIDYW-RLPKDATLKDVITVIRADEAHHRDVNHFASDIQ 309
           +A  YW  L  +++ +D+I  IRADEA HR+VNH  ++++
Sbjct: 283 VAAQYWPELTNESSFRDLILRIRADEAKHREVNHTFANLE 322


>gi|294655674|ref|XP_457848.2| DEHA2C03828p [Debaryomyces hansenii CBS767]
 gi|199430515|emb|CAG85893.2| DEHA2C03828p [Debaryomyces hansenii CBS767]
          Length = 338

 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 86/222 (38%), Positives = 129/222 (58%), Gaps = 27/222 (12%)

Query: 115 KHHVPTTFLDKVAYRTVKLLRIPTDL----------------FFQRRYG-------CRAM 151
           +H  P +  D++A++ ++L+R   D                 F   RY         R +
Sbjct: 78  EHREPQSRGDRIAFKGIQLVRGSFDFVTGYKKPANEQDIQDGFKGTRYEMTEPKWLTRCI 137

Query: 152 MLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYER 211
            LE++A VPGMV   + HL SLR  +    WI+ LL+EA NERMHL+T ++L +P W+ R
Sbjct: 138 FLESIAGVPGMVAAFIRHLHSLRLLRRDKAWIETLLDEAYNERMHLLTFIKLGRPSWFTR 197

Query: 212 MLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPA 268
            ++   QGVF N FF+ YL++PK  HR VGYLEEEA+ +YT  L+++  G +   +N+  
Sbjct: 198 SIIYIGQGVFCNLFFMCYLINPKYCHRFVGYLEEEAVSTYTHLLEELKMGKLKEFDNIQI 257

Query: 269 PAIAIDYW-RLPKDATLKDVITVIRADEAHHRDVNHFASDIQ 309
           PAI+  YW  L + ++  D+I  IRADEA HR+VNH  +++ 
Sbjct: 258 PAISWQYWPELDEKSSFTDLILRIRADEAKHREVNHTLANLN 299


>gi|238878671|gb|EEQ42309.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 365

 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 85/220 (38%), Positives = 127/220 (57%), Gaps = 26/220 (11%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDL---------------------FFQRRYGCRAMMLE 154
           H    T  DK+++R+++ +R   DL                       + ++  R + LE
Sbjct: 107 HRETKTLGDKISFRSIQFMRQCFDLVTGYAVPKTNNPEEFKGTRWEMTEGKWLTRCIFLE 166

Query: 155 TVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLV 214
           +VA VPG V G L HL SLR  +    WI+ LL+EA NERMHL+T +++ KP W+ R ++
Sbjct: 167 SVAGVPGSVAGFLRHLHSLRMLRRDKAWIETLLDEAYNERMHLLTFIKIGKPSWFTRSII 226

Query: 215 LTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDI----DSGSIENVPAPA 270
              QGVF N FF+LYLL+P+  HR VGYLEEEA+ +Y+  L ++       + E +  P 
Sbjct: 227 YVGQGVFTNVFFLLYLLNPRYCHRFVGYLEEEAVRTYSHLLDELAVPGKLPAFETMKIPE 286

Query: 271 IAIDYW-RLPKDATLKDVITVIRADEAHHRDVNHFASDIQ 309
           +A+ YW  L   ++ KD+I  IRADEA HR+VNH  ++++
Sbjct: 287 VAVQYWPELTPKSSFKDLILRIRADEAKHREVNHTFANLE 326


>gi|300120685|emb|CBK20239.2| Alternative oxydase (AOX) [Blastocystis hominis]
          Length = 302

 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 82/184 (44%), Positives = 120/184 (65%), Gaps = 1/184 (0%)

Query: 124 DKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWI 183
           D++A   V +L    +L+F+  Y  RA+ LE+VA+VPG+V   L HL+ LR+ Q    WI
Sbjct: 81  DRIAKGIVDMLFFCGNLYFRDNYIRRAIFLESVASVPGLVCSSLHHLRCLRRLQ-PNEWI 139

Query: 184 KALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYL 243
           K L++EAENERMHL+ +         +++ +  +Q  F + F  +++ +P+ +HR+VG+L
Sbjct: 140 KPLVDEAENERMHLLAVRTYTNLTIVQKLFIRILQVSFVSLFSFMFVFTPRTSHRLVGFL 199

Query: 244 EEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNH 303
           EE A+ SYTE +K ID+G ++N  A  I  DYW LP+DATL+D + VIRADEA HR VNH
Sbjct: 200 EEHAVDSYTEMIKRIDTGKLKNERATQITKDYWGLPEDATLRDALLVIRADEADHRLVNH 259

Query: 304 FASD 307
              D
Sbjct: 260 TLGD 263


>gi|51701359|sp|Q9UV71.1|AOX2_CANAL RecName: Full=Alternative oxidase 2, mitochondrial; Flags:
           Precursor
 gi|6650742|gb|AAF21993.1|AF116872_1 alternative oxidase [Candida albicans]
          Length = 365

 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 85/220 (38%), Positives = 127/220 (57%), Gaps = 26/220 (11%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDL---------------------FFQRRYGCRAMMLE 154
           H    T  DK+++R+++ +R   DL                       + ++  R + LE
Sbjct: 107 HRETKTLGDKISFRSIQFMRQCFDLVTGYAVPKTNNPDEFKGTRWEMTEGKWLTRCIFLE 166

Query: 155 TVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLV 214
           +VA VPG V G L HL SLR  +    WI+ LL+EA NERMHL+T +++ KP W+ R ++
Sbjct: 167 SVAGVPGSVAGFLRHLHSLRMLRRDKAWIETLLDEAYNERMHLLTFIKIGKPSWFTRSII 226

Query: 215 LTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDI----DSGSIENVPAPA 270
              QGVF N FF+LYLL+P+  HR VGYLEEEA+ +Y+  L ++       + E +  P 
Sbjct: 227 YVGQGVFTNVFFLLYLLNPRYCHRFVGYLEEEAVRTYSHLLDELAVPGKLPAFETMKIPE 286

Query: 271 IAIDYW-RLPKDATLKDVITVIRADEAHHRDVNHFASDIQ 309
           +A+ YW  L   ++ KD+I  IRADEA HR+VNH  ++++
Sbjct: 287 VAVQYWPELTPKSSFKDLILRIRADEAKHREVNHTFANLE 326


>gi|68465140|ref|XP_723269.1| inducible alternative oxidase 2 [Candida albicans SC5314]
 gi|46445296|gb|EAL04565.1| inducible alternative oxidase 2 [Candida albicans SC5314]
          Length = 365

 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 85/220 (38%), Positives = 127/220 (57%), Gaps = 26/220 (11%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDL---------------------FFQRRYGCRAMMLE 154
           H    T  DK+++R+++ +R   DL                       + ++  R + LE
Sbjct: 107 HRETKTLGDKISFRSIQFMRQCFDLVTGYAVPKTNNPEEFKGTRWEMTEGKWLTRCIFLE 166

Query: 155 TVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLV 214
           +VA VPG V G L HL SLR  +    WI+ LL+EA NERMHL+T +++ KP W+ R ++
Sbjct: 167 SVAGVPGSVAGFLRHLHSLRMLRRDKAWIETLLDEAYNERMHLLTFIKIGKPSWFTRSII 226

Query: 215 LTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDI----DSGSIENVPAPA 270
              QGVF N FF+LYLL+P+  HR VGYLEEEA+ +Y+  L ++       + E +  P 
Sbjct: 227 YVGQGVFTNVFFLLYLLNPRYCHRFVGYLEEEAVRTYSHLLDELAVPGKLPAFETMKIPE 286

Query: 271 IAIDYW-RLPKDATLKDVITVIRADEAHHRDVNHFASDIQ 309
           +A+ YW  L   ++ KD+I  IRADEA HR+VNH  ++++
Sbjct: 287 VAVQYWPELTPKSSFKDLILRIRADEAKHREVNHTFANLE 326


>gi|448091410|ref|XP_004197324.1| Piso0_004571 [Millerozyma farinosa CBS 7064]
 gi|448095975|ref|XP_004198355.1| Piso0_004571 [Millerozyma farinosa CBS 7064]
 gi|359378746|emb|CCE85005.1| Piso0_004571 [Millerozyma farinosa CBS 7064]
 gi|359379777|emb|CCE83974.1| Piso0_004571 [Millerozyma farinosa CBS 7064]
          Length = 341

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 86/221 (38%), Positives = 128/221 (57%), Gaps = 27/221 (12%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDL----------------FFQRRYG-------CRAMM 152
           H  P TF DKV Y  +  +R   D                 F   RY         R + 
Sbjct: 82  HREPVTFGDKVTYNMILAIRRTFDFVTGYKKPQTPEEKEHAFKGTRYEMTESKWMTRVIF 141

Query: 153 LETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERM 212
           LE+VA VPGMV   + HL SLR  +    WI+ LL+EA NERMHL+T ++L KP W+ ++
Sbjct: 142 LESVAGVPGMVAAFIRHLHSLRLLRRDKAWIETLLDEAYNERMHLLTFMKLGKPSWFTKL 201

Query: 213 LVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAP 269
           ++   QGVF N FF  YLL+P+  HR VGYLEEEA+ +YT  L ++++G +   +++  P
Sbjct: 202 IIYAGQGVFCNMFFFSYLLNPRYCHRFVGYLEEEAVSTYTHLLDELEAGKLPKFDHIELP 261

Query: 270 AIAIDYW-RLPKDATLKDVITVIRADEAHHRDVNHFASDIQ 309
            I+  YW  L + ++  D+++++RADEA HR+VNH  ++++
Sbjct: 262 EISWHYWGDLNEKSSFYDLVSLVRADEAKHREVNHTLANLK 302


>gi|51701296|sp|O93853.1|AOX1_CANAL RecName: Full=Alternative oxidase 1, mitochondrial; Flags:
           Precursor
 gi|4090947|gb|AAC98914.1| alternative oxidase [Candida albicans]
          Length = 379

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 79/190 (41%), Positives = 122/190 (64%), Gaps = 11/190 (5%)

Query: 143 QRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVE 202
           + ++  R + LE++A VPG V G + HL SLR       WI+ L +EA NERMHL+T ++
Sbjct: 169 EEKWMTRCIFLESIAGVPGSVAGFVRHLHSLRMLTRDKAWIETLHDEAYNERMHLLTFIK 228

Query: 203 LVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGS 262
           + KP W+ R ++   QGVF N FF++YL++P+  HR VGYLEEEA+ +YT  + ++D  +
Sbjct: 229 IGKPSWFTRSIIYIGQGVFTNIFFLVYLMNPRYCHRFVGYLEEEAVRTYTHLIDELDDPN 288

Query: 263 ----IENVPAPAIAIDYW-RLPKDATLKDVITVIRADEAHHRDVNH-FASDIQFQGK--- 313
                + +P P IA+ YW  L  +++ KD+I  IRADEA HR++NH FA+  Q+Q +   
Sbjct: 289 KLPDFQKLPIPNIAVQYWPELTPESSFKDLILRIRADEAKHREINHTFANLEQWQDRNPF 348

Query: 314 --ELRDAPAP 321
             +++D+  P
Sbjct: 349 ALKIKDSDKP 358


>gi|299752789|ref|XP_001832846.2| alternative oxidase [Coprinopsis cinerea okayama7#130]
 gi|298410001|gb|EAU88999.2| alternative oxidase [Coprinopsis cinerea okayama7#130]
          Length = 362

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 81/184 (44%), Positives = 113/184 (61%), Gaps = 23/184 (12%)

Query: 149 RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGW--------------------IKALLE 188
           R + LET+A VPGMV   + HL+SLR  +   GW                    I   LE
Sbjct: 136 RILFLETIAGVPGMVAATIRHLQSLRLMRRDNGWYGLNQRLRGMVGVLNACFHRIHTCLE 195

Query: 189 EAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAI 248
           EAENERMHLMT + L +P    R ++L  QGVF+N FF+ Y++SPK  HR VGYLEEEA+
Sbjct: 196 EAENERMHLMTFMTLRRPSLPFRAIILAAQGVFYNLFFLSYIISPKTCHRFVGYLEEEAV 255

Query: 249 HSYTEYLKDIDSGSI---ENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFA 305
           ++YT+ + ++++G I    + PAP I+IDYWRL  DA + D++  +R+DE  HR VNH  
Sbjct: 256 YTYTKCINELEAGLIPEWTSKPAPEISIDYWRLSPDAKMLDLLYAVRSDETTHRFVNHSL 315

Query: 306 SDIQ 309
           +++ 
Sbjct: 316 ANLN 319


>gi|406601822|emb|CCH46595.1| Alternative oxidase, mitochondrial [Wickerhamomyces ciferrii]
          Length = 352

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 74/171 (43%), Positives = 116/171 (67%), Gaps = 4/171 (2%)

Query: 143 QRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVE 202
           + ++  R + LE++A VPGMV   + HL S+R  +    WI+ LL+EA NERMHL+T ++
Sbjct: 141 EEKWLTRVIFLESIAGVPGMVAAFVRHLHSIRLLKRDKAWIETLLDEAYNERMHLLTFMK 200

Query: 203 LVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGS 262
           L  P W+ R+++   QGVF N FF++YL+ P+  HR VGYLEEEA+ +YT  +KD+D+  
Sbjct: 201 LGNPSWFTRLIIYVGQGVFCNLFFLIYLIRPRYCHRFVGYLEEEAVSTYTHLIKDLDAKR 260

Query: 263 I---ENVPAPAIAIDYW-RLPKDATLKDVITVIRADEAHHRDVNHFASDIQ 309
           +   +NV  P IA  YW  L +++T +D++  +RADE+ HR+VNH  ++++
Sbjct: 261 LPRFDNVKLPEIAWVYWTSLDENSTFRDLVLRVRADESKHREVNHTLANLK 311


>gi|68464765|ref|XP_723460.1| constitutive alternative oxidase [Candida albicans SC5314]
 gi|68465142|ref|XP_723270.1| constitutive alternative oxidase [Candida albicans SC5314]
 gi|46445297|gb|EAL04566.1| constitutive alternative oxidase [Candida albicans SC5314]
 gi|46445494|gb|EAL04762.1| constitutive alternative oxidase [Candida albicans SC5314]
          Length = 379

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 79/188 (42%), Positives = 121/188 (64%), Gaps = 11/188 (5%)

Query: 145 RYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELV 204
           ++  R + LE++A VPG V G + HL SLR       WI+ L +EA NERMHL+T +++ 
Sbjct: 171 KWMTRCIFLESIAGVPGSVAGFIRHLHSLRMLTRDKAWIETLHDEAYNERMHLLTFIKIG 230

Query: 205 KPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGS-- 262
           KP W+ R ++   QGVF N FF++YL++P+  HR VGYLEEEA+ +YT  + ++D  +  
Sbjct: 231 KPSWFTRSIIYIGQGVFTNIFFLVYLMNPRYCHRFVGYLEEEAVRTYTHLIDELDDPNKL 290

Query: 263 --IENVPAPAIAIDYW-RLPKDATLKDVITVIRADEAHHRDVNH-FASDIQFQGK----- 313
              + +P P IA+ YW  L  +++ KD+I  IRADEA HR++NH FA+  Q+Q +     
Sbjct: 291 PDFQKLPIPNIAVQYWPELTPESSFKDLILRIRADEAKHREINHTFANLEQWQDRNPFAL 350

Query: 314 ELRDAPAP 321
           +++D+  P
Sbjct: 351 KIKDSDKP 358


>gi|118384863|ref|XP_001025570.1| Alternative oxidase family protein [Tetrahymena thermophila]
 gi|89307337|gb|EAS05325.1| Alternative oxidase family protein [Tetrahymena thermophila SB210]
          Length = 301

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 96/230 (41%), Positives = 127/230 (55%), Gaps = 24/230 (10%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDL----------------FFQRRYGCRAMMLETVAAV 159
           H  P  F D+ A   ++ LR   D+                  +R +  R + LETVA V
Sbjct: 75  HLEPANFGDRFANFFIQSLRYGFDIMSGYKKVFPWQEKGAPLTEREWINRILFLETVAGV 134

Query: 160 PGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQG 219
           PG V  M  HL+SLR  +   GWI  LLEEAENERMHL+T +E+ KP +  R  V+  Q 
Sbjct: 135 PGFVAAMHRHLRSLRSMKRDYGWIHTLLEEAENERMHLLTFLEVQKPTFLFRTGVILAQY 194

Query: 220 VFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKD-IDSGSIENV----PAPAIAID 274
            +   F VLY   P++ HR+VGYLEEEA+ +YT  ++  +  GS  ++    PAP I+ID
Sbjct: 195 GYVALFSVLYFFYPRVCHRIVGYLEEEAVKTYTHSIETALKEGSEIHIWLTKPAPKISID 254

Query: 275 YWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGY 324
           YW+L  +A L DVI  +R DE HHRDVNH  +D   Q K     P P G+
Sbjct: 255 YWKLSPNACLLDVIYAVRKDEEHHRDVNHKLADDYSQKK---PNPFPPGH 301


>gi|294872126|ref|XP_002766164.1| alternative oxidase, putative [Perkinsus marinus ATCC 50983]
 gi|239866823|gb|EEQ98881.1| alternative oxidase, putative [Perkinsus marinus ATCC 50983]
          Length = 327

 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 86/199 (43%), Positives = 117/199 (58%), Gaps = 10/199 (5%)

Query: 115 KHHVPTTFLDKVAYRTVKLLRIPTDLF-----FQ---RRYGCRAMMLETVAAVPGMVGGM 166
           +H  P T  D +A+  V L R   D F     F+   + Y  R ++LET+A +PGMV  M
Sbjct: 89  EHLKPKTIRDHLAHSAVWLCRTGYDFFSGYDFFKHDYKMYARRLIVLETIAGIPGMVAAM 148

Query: 167 LLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFF 226
             HL+SLR+ +   GWI  L+EEAE+ERMHL+    LV   W+ R  +   QG FF  + 
Sbjct: 149 NRHLRSLRRMERDNGWIPTLIEEAEDERMHLLISQGLVSHGWFLRSFLTAAQGAFFLFYA 208

Query: 227 VLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENV--PAPAIAIDYWRLPKDATL 284
             Y +SP+  HR VGYLEEEA  +YT  ++D+++G +      AP  A  Y+ LP+DATL
Sbjct: 209 GAYSVSPRFCHRFVGYLEEEAFKTYTAIVEDVENGQVPEFDRSAPFYAKAYYCLPEDATL 268

Query: 285 KDVITVIRADEAHHRDVNH 303
            D +  +RADE  HRDVNH
Sbjct: 269 LDTLICMRADEDRHRDVNH 287


>gi|238878670|gb|EEQ42308.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 379

 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 79/188 (42%), Positives = 121/188 (64%), Gaps = 11/188 (5%)

Query: 145 RYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELV 204
           ++  R + LE++A VPG V G + HL SLR       WI+ L +EA NERMHL+T +++ 
Sbjct: 171 KWMTRCIFLESIAGVPGSVAGFVRHLHSLRMLTRDKAWIETLHDEAYNERMHLLTFIKIG 230

Query: 205 KPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGS-- 262
           KP W+ R ++   QGVF N FF++YL++P+  HR VGYLEEEA+ +YT  + ++D  +  
Sbjct: 231 KPSWFTRSIIYIGQGVFTNIFFLVYLMNPRYCHRFVGYLEEEAVRTYTHLIDELDDPNKL 290

Query: 263 --IENVPAPAIAIDYW-RLPKDATLKDVITVIRADEAHHRDVNH-FASDIQFQGK----- 313
              + +P P IA+ YW  L  +++ KD+I  IRADEA HR++NH FA+  Q+Q +     
Sbjct: 291 PDFQKLPIPNIAVQYWPELTPESSFKDLILRIRADEAKHREINHTFANLEQWQDRNPFAL 350

Query: 314 ELRDAPAP 321
           +++D+  P
Sbjct: 351 KIKDSDKP 358


>gi|358060729|dbj|GAA93500.1| hypothetical protein E5Q_00141 [Mixia osmundae IAM 14324]
          Length = 401

 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 75/163 (46%), Positives = 110/163 (67%), Gaps = 2/163 (1%)

Query: 149 RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKW 208
           R + LET+A VPG    +L HLKSLR  +  GGWI  LL+E+ENER+HL + +E+ KP  
Sbjct: 188 RFIFLETIAGVPGSAAAILRHLKSLRTMERDGGWIHTLLQESENERIHLFSFLEITKPGR 247

Query: 209 YERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENV-- 266
           + R++ +  QGVF +AF + Y++SP++ HR VG LEE+A+ +YT  + +I +G +     
Sbjct: 248 FMRLMTMAAQGVFTSAFALAYVISPRICHRFVGKLEEQAVLTYTLAIDEIKAGRLPEFDR 307

Query: 267 PAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQ 309
            AP IAI+YWR+   AT  D++  IRADEA HR +NH  +D++
Sbjct: 308 KAPEIAINYWRMQPAATFLDMLYQIRADEATHRFINHSLADLK 350


>gi|224012252|ref|XP_002294779.1| mitochondrial alternative oxidase [Thalassiosira pseudonana
           CCMP1335]
 gi|220969799|gb|EED88139.1| mitochondrial alternative oxidase [Thalassiosira pseudonana
           CCMP1335]
          Length = 227

 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 88/214 (41%), Positives = 120/214 (56%), Gaps = 16/214 (7%)

Query: 111 IDLKKHHVP-TTFLDKVAYRTVKLLRIPTDLFFQRRYGC--------RAMMLETVAAVPG 161
           +D+K  HVP   F+DK A+  VK  R   D+      G         RA+ LETVAA+PG
Sbjct: 14  LDVKLTHVPPEKFVDKAAFVAVKAFRFGFDIGTGWNRGAITTDKILNRAIFLETVAAIPG 73

Query: 162 MVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVF 221
           MV  ++ H +SLR     GG +   LEEA NERMHL+T + +  P +  R  V+  Q  F
Sbjct: 74  MVAAIIRHFRSLRNMARDGGMLNMFLEEANNERMHLLTFIRMKDPGYLFRATVIGGQFAF 133

Query: 222 FNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDI-------DSGSIENVPAPAIAID 274
            +AF  +Y++SP   HR VGY+EEEA  +YT+ +K I       D G+     AP IA  
Sbjct: 134 GSAFLTMYMISPAFCHRFVGYIEEEACATYTKIIKAIEEAPEGTDLGNWRTEEAPKIAKG 193

Query: 275 YWRLPKDATLKDVITVIRADEAHHRDVNHFASDI 308
           YW L +  ++ D++  +RADEA HRDVNH  S +
Sbjct: 194 YWHLGEHGSVLDLMLAVRADEAEHRDVNHAVSGV 227


>gi|241949571|ref|XP_002417508.1| (constitutive) alternative oxidase 1, mitochondrial precursor,
           putative [Candida dubliniensis CD36]
 gi|223640846|emb|CAX45161.1| (constitutive) alternative oxidase 1, mitochondrial precursor,
           putative [Candida dubliniensis CD36]
          Length = 389

 Score =  160 bits (406), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 79/185 (42%), Positives = 118/185 (63%), Gaps = 11/185 (5%)

Query: 148 CRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPK 207
            R + LE++A VPG V G + HL SLR       WI+ L +EA NERMHL+T +++ KP 
Sbjct: 184 TRCIFLESIAGVPGSVAGFVRHLHSLRMLTRDKAWIETLHDEAYNERMHLLTFIKIGKPS 243

Query: 208 WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGS----I 263
           W+ R ++   QGVF N FF++YL++P+  HR VGYLEEEA+ +YT  + +++  +     
Sbjct: 244 WFTRSIIYIGQGVFTNIFFLVYLMNPRYCHRFVGYLEEEAVRTYTHLIHELNDPNKLPDF 303

Query: 264 ENVPAPAIAIDYW-RLPKDATLKDVITVIRADEAHHRDVNH-FASDIQFQGK-----ELR 316
           E +  P IA+ YW  L  D++ KD+I  IRADEA HR++NH FA+  Q+Q +     +++
Sbjct: 304 EKLSIPTIAVQYWPELTPDSSFKDLILRIRADEAKHREINHTFANLEQWQDRNPFALQIK 363

Query: 317 DAPAP 321
           D+  P
Sbjct: 364 DSDKP 368


>gi|354548354|emb|CCE45090.1| hypothetical protein CPAR2_700940 [Candida parapsilosis]
          Length = 370

 Score =  160 bits (406), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 87/221 (39%), Positives = 124/221 (56%), Gaps = 27/221 (12%)

Query: 116 HHVPTTFLDKVAYRTVKLLR----------IPT-----DLFFQRRYG-------CRAMML 153
           H  P TF DK+AY  +K  R          +P      D +   RY         R + L
Sbjct: 111 HREPRTFGDKIAYHGIKFCRGCFDFVTGYKVPKEGESLDKYKGTRYEMTEGKWLTRVIFL 170

Query: 154 ETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERML 213
           E+VA VPG V   L  L SLR  +    WI+ L +EA NERMHL+T +++ +P W+ + +
Sbjct: 171 ESVAGVPGSVASFLRTLHSLRLLRRDKAWIETLQDEAYNERMHLLTFMKIGQPSWFTKTI 230

Query: 214 VLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDS----GSIENVPAP 269
           +   QGVF N FF  YL +PK  HR VGYLEEEA+ +YT  L +++        + +  P
Sbjct: 231 IYLGQGVFTNLFFFCYLANPKYCHRFVGYLEEEAVRTYTHLLDEMEDPNKLNGFQKIQIP 290

Query: 270 AIAIDYW-RLPKDATLKDVITVIRADEAHHRDVNHFASDIQ 309
            IA++YW  L KD++ KD+I  IRADE+ HR+VNH  ++++
Sbjct: 291 TIAVNYWSSLSKDSSFKDLILRIRADESKHREVNHTLANLK 331


>gi|62241309|dbj|BAD93712.1| alternative oxidase 1a [Candida maltosa]
          Length = 371

 Score =  160 bits (406), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 88/244 (36%), Positives = 129/244 (52%), Gaps = 31/244 (12%)

Query: 92  SPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDL----------- 140
           SP+P   F     YR   +     H  P T  DKV+Y      R   D            
Sbjct: 94  SPYPHPDFTEAGVYRVKFT-----HRPPVTVGDKVSYYGTMFCRKCFDFVTGYAVPPKDQ 148

Query: 141 ----------FFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEA 190
                       + ++  R + LE VA +PG V G++ HL SLR       WI+ L +EA
Sbjct: 149 PDKYIGTRWEMTEGKWMTRCIFLEAVAGIPGSVAGLIRHLHSLRMLTRDKAWIQTLNDEA 208

Query: 191 ENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHS 250
            NERMHL+T +++ KP W+ R ++   QGVF N FF++YL++PK  HR VGYLEEEA+ +
Sbjct: 209 YNERMHLLTFIKIGKPSWFTRTIIYVGQGVFTNLFFMVYLMNPKYCHRFVGYLEEEAVRT 268

Query: 251 YTEYLKDIDS----GSIENVPAPAIAIDYW-RLPKDATLKDVITVIRADEAHHRDVNHFA 305
           YT  L +++        E +  P IA+ YW  L  +++ KD+I  IRADE+ HR++NH  
Sbjct: 269 YTHLLAELNVPGKLPDFEKMVIPTIAVQYWDELSPESSFKDLILRIRADESKHREINHTF 328

Query: 306 SDIQ 309
           ++++
Sbjct: 329 ANLE 332


>gi|145536776|ref|XP_001454110.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124421854|emb|CAK86713.1| unnamed protein product [Paramecium tetraurelia]
          Length = 271

 Score =  160 bits (406), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 91/229 (39%), Positives = 134/229 (58%), Gaps = 24/229 (10%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTD--------------LFFQRRYGCRAMMLETVAAVPG 161
           H +P TF D+ A+  ++ +R+  D              +  ++++  R + LETVA VPG
Sbjct: 47  HKLPLTFGDRFAHLFIQSMRVGFDVLSGYRKVFPWQDNIISEKKWINRVLFLETVAGVPG 106

Query: 162 MVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVF 221
            V GM  HL+SLR  +   GWI  LLEEAENER+HL+T + + KP    R  V+  Q  +
Sbjct: 107 FVAGMHRHLRSLRGMKRDLGWIHTLLEEAENERVHLLTFLTIKKPSLIFRTGVILAQLWY 166

Query: 222 FNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLK--DIDSGSI---ENVPAPAIAIDYW 276
              + V Y++ P++ HR+VGYLEEEA+ +YT  ++  +I+  SI   +  PA   +I+YW
Sbjct: 167 VALYSVAYMIQPRVCHRIVGYLEEEAVKTYTHMIEEIEIEGSSIHSWKTRPAHQNSIEYW 226

Query: 277 RLPKDATLKDVITVIRADEAHHRDVNH-FASDIQFQGKELRDAPAPLGY 324
           +L ++ATL DV+  IR DE HH++VNH FA D   Q     + P P GY
Sbjct: 227 KLSENATLLDVVKAIRKDEEHHKEVNHKFADDYTQQS----ENPFPPGY 271


>gi|68464763|ref|XP_723459.1| hypothetical protein CaO19.4773 [Candida albicans SC5314]
 gi|46445493|gb|EAL04761.1| hypothetical protein CaO19.4773 [Candida albicans SC5314]
          Length = 241

 Score =  160 bits (406), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 77/170 (45%), Positives = 111/170 (65%), Gaps = 5/170 (2%)

Query: 145 RYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELV 204
           ++  R + LE+VA VPG V G L HL SLR  +    WI+ LL+EA NERMHL+T +++ 
Sbjct: 33  KWLTRCIFLESVAGVPGSVAGFLRHLHSLRMLRRDKAWIETLLDEAYNERMHLLTFIKIG 92

Query: 205 KPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDI----DS 260
           KP W+ R ++   QGVF N FF+LYLL+P+  HR VGYLEEEA+ +Y+  L ++      
Sbjct: 93  KPSWFTRSIIYVGQGVFTNVFFLLYLLNPRYCHRFVGYLEEEAVRTYSHLLDELAVPGKL 152

Query: 261 GSIENVPAPAIAIDYW-RLPKDATLKDVITVIRADEAHHRDVNHFASDIQ 309
            + E +  P +A+ YW  L   ++ KD+I  IRADEA HR+VNH  ++++
Sbjct: 153 PAFETMKIPEVAVQYWPELTPKSSFKDLILRIRADEAKHREVNHTFANLE 202


>gi|443894326|dbj|GAC71674.1| hypothetical protein PANT_5c00016 [Pseudozyma antarctica T-34]
          Length = 468

 Score =  160 bits (405), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 90/162 (55%), Positives = 111/162 (68%), Gaps = 4/162 (2%)

Query: 149 RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKW 208
           R + LET+A VPGMV     HL+SLR  +   GWI  +LE+AENERMHL+T +EL KP W
Sbjct: 254 RIIFLETIAGVPGMVAATCRHLQSLRLMKRDKGWIHTMLEDAENERMHLLTFMELAKPGW 313

Query: 209 YERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---EN 265
             R   L  QGVF+N FFV YL+SP++AHR VG LEEEA+ +Y+  L D++ G +   EN
Sbjct: 314 IARTFALLAQGVFYNFFFVFYLVSPRVAHRFVGVLEEEAVMTYSFILDDLNEGRLPEWEN 373

Query: 266 VPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNH-FAS 306
           V AP IA  YW+L  DA L DVI  +RADEA HR +NH FAS
Sbjct: 374 VRAPEIARQYWQLSDDAMLVDVIRAVRADEATHRHINHTFAS 415


>gi|219114258|ref|XP_002176300.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217402703|gb|EEC42692.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 218

 Score =  160 bits (405), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 90/218 (41%), Positives = 126/218 (57%), Gaps = 26/218 (11%)

Query: 106 RADLSIDLKKHHVPTTFLDKVAYRTVKLLR-------------IPTDLFFQRRYGCRAMM 152
           +ADL I+L  H  P    D++AY  VK +R             I  D+  QR      + 
Sbjct: 7   QADLDIELT-HTKPEGIRDRLAYNAVKAVRWSFDKMTGWNYKSITQDMVLQR-----VIY 60

Query: 153 LETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERM 212
           LET+AAVPGMV  ++ H +SLR FQ  GG ++  L+EA NERMHL++ V +  P    R 
Sbjct: 61  LETIAAVPGMVAAIVRHFRSLRSFQRDGGMMQMFLDEANNERMHLLSFVRMKDPSMLFRA 120

Query: 213 LVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIEN------- 265
            V+  Q  F +AF +LY++SPK  HR VGY+EEEA  +YT+ +K I+    +N       
Sbjct: 121 AVIGGQAGFGSAFLLLYVISPKFCHRFVGYVEEEACTTYTKIIKAIEDAPEDNELAAWRT 180

Query: 266 VPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNH 303
             AP+IA  YW+L +  T+ +++  +RADEA HRDVNH
Sbjct: 181 QLAPSIARSYWKLGEYGTVLELMYAVRADEAEHRDVNH 218


>gi|224012000|ref|XP_002294653.1| mitochondrial alternative oxidase [Thalassiosira pseudonana
           CCMP1335]
 gi|220969673|gb|EED88013.1| mitochondrial alternative oxidase [Thalassiosira pseudonana
           CCMP1335]
          Length = 264

 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 90/214 (42%), Positives = 120/214 (56%), Gaps = 16/214 (7%)

Query: 111 IDLKKHHV-PTTFLDKVAYRTVKLLRIPTDLFFQRRYGC--------RAMMLETVAAVPG 161
           +D+K  HV P + LD++A   VK+ R   D       G         RA+ LETVAA+PG
Sbjct: 14  LDIKMTHVEPESALDRLALFAVKVTRFGFDQATGWNRGSITTDKVLNRAIFLETVAAIPG 73

Query: 162 MVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVF 221
           MV  ++ H +SLR     GG +   LEEA NERMHL+T + +  P +  R  V+  Q  F
Sbjct: 74  MVAAIIRHFRSLRNMARDGGMLNMFLEEANNERMHLLTFIRMKDPGYLFRGAVVGSQFAF 133

Query: 222 FNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDI-------DSGSIENVPAPAIAID 274
            +AF VLY++SP   HR VGY+EEEA  +YT+ +K I       D        AP IA  
Sbjct: 134 GSAFLVLYMISPAFCHRFVGYIEEEACATYTKIIKAIEEAPEGSDLAKWRTEEAPKIAKG 193

Query: 275 YWRLPKDATLKDVITVIRADEAHHRDVNHFASDI 308
           YW L ++ T+ DV+  +RADEA HRDVNH  S +
Sbjct: 194 YWHLGEEGTVLDVMRAVRADEAEHRDVNHAVSGV 227


>gi|343429594|emb|CBQ73167.1| related to alternative oxidase precursor, mitochondrial
           [Sporisorium reilianum SRZ2]
          Length = 409

 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 95/194 (48%), Positives = 119/194 (61%), Gaps = 4/194 (2%)

Query: 117 HVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKF 176
           HV  T        T+K +R     F    +  R + LET+A VPGMV     HL+SLR  
Sbjct: 163 HVAKTVSSDDGAMTLKEMRAKGLCFGPDGWLNRIIFLETIAGVPGMVAASCRHLQSLRLM 222

Query: 177 QHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLA 236
           +   GWI  +LE+AENERMHL+T + + KP W  R   L  QGVF+N FFV YL +PK+A
Sbjct: 223 KRDKGWIHTMLEDAENERMHLLTFMAVAKPGWIARTFALLAQGVFYNFFFVFYLTAPKVA 282

Query: 237 HRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAIDYWRLPKDATLKDVITVIRA 293
           HR VG LEEEA+ +Y+  L+D+  G +   ENVPAP IA  YW+L   A L DVI  +RA
Sbjct: 283 HRFVGVLEEEAVLTYSYILEDLKEGRLPEWENVPAPEIAKQYWQLGDQAMLVDVIRAVRA 342

Query: 294 DEAHHRDVNH-FAS 306
           DEA HR +NH FAS
Sbjct: 343 DEATHRHINHTFAS 356


>gi|344302079|gb|EGW32384.1| inducible alternative oxidase 2 [Spathaspora passalidarum NRRL
           Y-27907]
          Length = 342

 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 124/221 (56%), Gaps = 26/221 (11%)

Query: 115 KHHVPTTFLDKVAYRTVKLLRIPTDL---------------------FFQRRYGCRAMML 153
           +H  P T  DK++Y  ++  R   D                        + ++  R + L
Sbjct: 83  EHREPKTLGDKISYHGMRFCRSAFDKVTGYKKLSGTDIREHDGTRYEMTEGKWLTRVIFL 142

Query: 154 ETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERML 213
           E++A VPG V   + HL SLR  +    WI+ LL+EA NERMHL+T ++L KP W+ R +
Sbjct: 143 ESIAGVPGFVASFIRHLHSLRLLKRDKAWIETLLDEAYNERMHLLTFIKLGKPSWFTRSI 202

Query: 214 VLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDS----GSIENVPAP 269
           +   QGVF N FF+ YL +P+  HR VGYLEEEA+ +YT  + ++++        ++  P
Sbjct: 203 IYAGQGVFANIFFLCYLANPRFCHRFVGYLEEEAVSTYTHLVHELETPGKLTGFNDMKIP 262

Query: 270 AIAIDYW-RLPKDATLKDVITVIRADEAHHRDVNHFASDIQ 309
            IA+ YW  L ++++ KD+I  IRADEA HR+VNH  +++ 
Sbjct: 263 EIAVQYWPELTENSSFKDLILRIRADEAKHREVNHTLANLN 303


>gi|260794312|ref|XP_002592153.1| hypothetical protein BRAFLDRAFT_124076 [Branchiostoma floridae]
 gi|229277368|gb|EEN48164.1| hypothetical protein BRAFLDRAFT_124076 [Branchiostoma floridae]
          Length = 403

 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 107/294 (36%), Positives = 142/294 (48%), Gaps = 58/294 (19%)

Query: 80  GISRP-----KITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLL 134
           G+S+P     K  ++DG+   ++   P  T   +++  +  H  P +F DK+AY +VK +
Sbjct: 113 GLSKPDDLEKKHVKDDGTMGQYSLPHPIWT-EEEVNKVVITHTPPQSFTDKLAYGSVKFM 171

Query: 135 RIPTDLFFQRRYGCRA--------MMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKAL 186
           R   DLF   +YG R         + LETVA VPGMV  M  HL SLR+ +   GWI  L
Sbjct: 172 RWNFDLFSGFKYGKRTERKWLQRIIFLETVAGVPGMVAAMTRHLHSLRRLKRDYGWIHTL 231

Query: 187 LEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVG----- 241
           LEEAENERMHLMT ++L  P    R  V+  QG F   F   YL+SP+  HR  G     
Sbjct: 232 LEEAENERMHLMTALQLRNPSALFRWCVVFAQGTFVTLFSAAYLVSPRFCHRFAGPGSIP 291

Query: 242 -------YLEEEAIHSYTEY-----------------------LKDIDSGSI---ENVPA 268
                      +  H Y +                        + D DSG +    ++ A
Sbjct: 292 GVGTCARQFTTQRHHHYAKRTGPFGMVRCLNPTVTHLLGIFRGMGDFDSGRLPLWSDMEA 351

Query: 269 PAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPL 322
           P +A  YW LP DA ++DVI  IRADEAHHR VNH  SD+       +D P P 
Sbjct: 352 PPLAKRYWSLPHDAMMRDVILAIRADEAHHRLVNHTLSDLD------KDDPNPF 399


>gi|260948572|ref|XP_002618583.1| hypothetical protein CLUG_02042 [Clavispora lusitaniae ATCC 42720]
 gi|238848455|gb|EEQ37919.1| hypothetical protein CLUG_02042 [Clavispora lusitaniae ATCC 42720]
          Length = 332

 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 126/221 (57%), Gaps = 27/221 (12%)

Query: 115 KHHVPTTFLDKVAYRTVKLLRIPTDL-----------------------FFQRRYGCRAM 151
           +H  P T +D+  +R +  +R   DL                         + ++  R +
Sbjct: 72  EHRPPKTAMDRFVFRCISTVRTTFDLVTGYKKPRTPEEKEHRFKGTRWEMTESKWLTRVI 131

Query: 152 MLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYER 211
            LE+VA VPGM    L HL SLR  +    WI+ LL+EA NERMHL+T +++ +P W+ +
Sbjct: 132 FLESVAGVPGMTAAFLRHLHSLRLMKRDKAWIETLLDEAYNERMHLLTFMKIGRPSWFTK 191

Query: 212 MLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPA 268
           + V   QGVF N FF++YLLSP+  HR VGYLEEEA+ +YT  ++++++  +   + +  
Sbjct: 192 VFVFAGQGVFCNLFFLMYLLSPRACHRFVGYLEEEAVSTYTHLIEELEAKRLPKFDGITV 251

Query: 269 PAIAIDYW-RLPKDATLKDVITVIRADEAHHRDVNHFASDI 308
           P +A  YW  L + +T  D+I  IRADE+ HR+VNH  +++
Sbjct: 252 PEVAQLYWPELNEKSTFLDLIQRIRADESKHREVNHTLANL 292


>gi|340502184|gb|EGR28896.1| hypothetical protein IMG5_166890 [Ichthyophthirius multifiliis]
          Length = 266

 Score =  158 bits (399), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 97/236 (41%), Positives = 132/236 (55%), Gaps = 22/236 (9%)

Query: 100 MPWETYRADLSIDLKKHHV-PTTFLDKVAYRTVKLLRIPTDL----------------FF 142
           MP   +  +   D+K  H+ P+T  D  A   ++ LR+  D+                  
Sbjct: 24  MPHPIWTENEVKDVKITHLQPSTIGDSFANIFIQSLRLSFDIMSGYKQIFPWQDKTKPIS 83

Query: 143 QRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVE 202
           ++++  R + LETVA VPG V  M  HL SLR  Q   GWI  LLEEAENERMHL+T ++
Sbjct: 84  EKKWLNRMLFLETVAGVPGFVAAMHRHLTSLRNMQRDYGWIHTLLEEAENERMHLLTFMK 143

Query: 203 LVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDS-G 261
           + KP    RM V+  Q  +   F +LY+  PK+ HRVVGYLEEEA+ +YT  ++ I+  G
Sbjct: 144 VQKPSPLFRMGVVFAQFGYVGLFSILYMFFPKVCHRVVGYLEEEAVKTYTHCIEVINQEG 203

Query: 262 S----IENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGK 313
           S     + + AP I+ +YW L  +A+L DVI  IR DE HHRDVNH  +D Q   K
Sbjct: 204 SPISHWKTMVAPQISRNYWYLSDNASLLDVIYAIRKDEEHHRDVNHTLADKQILDK 259


>gi|403357544|gb|EJY78400.1| Alternative oxidase isoform A [Oxytricha trifallax]
          Length = 275

 Score =  157 bits (397), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 82/205 (40%), Positives = 125/205 (60%), Gaps = 11/205 (5%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDLFF----QRR----YGCRAMMLETVAAVPGMVGGML 167
           H  P  F DK A R +  LR+  D       Q+R    +  R ++LE++A +PG+V G  
Sbjct: 41  HREPHNFRDKFALRWIGGLRLFVDALTGKDAQKRDAKTWFNRMVLLESIAPIPGLVVGTA 100

Query: 168 LHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFV 227
            + K+L+  +     +  +LEE+ENER HL   +   KPK+  RM +   Q  F+N FF+
Sbjct: 101 KYFKNLKDMKTDRALVHFMLEESENERTHLYLWLNYQKPKFISRMGIAFKQIAFWNVFFL 160

Query: 228 LYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGS---IENVPAPAIAIDYWRLPKDATL 284
            Y+ SP + HR +GYLEEEAI++YT +LK ID+G+   ++N PAP +A DY+ LP+DA  
Sbjct: 161 TYIFSPYVCHRFMGYLEEEAIYNYTMFLKQIDNGNLKELQNEPAPKLAKDYYNLPEDAKF 220

Query: 285 KDVITVIRADEAHHRDVNHFASDIQ 309
           +D++  +RADE  HR+ NH+  ++Q
Sbjct: 221 RDMLLALRADEVVHREFNHYFCELQ 245


>gi|116196990|ref|XP_001224307.1| hypothetical protein CHGG_05093 [Chaetomium globosum CBS 148.51]
 gi|88181006|gb|EAQ88474.1| hypothetical protein CHGG_05093 [Chaetomium globosum CBS 148.51]
          Length = 265

 Score =  157 bits (396), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 77/167 (46%), Positives = 108/167 (64%), Gaps = 6/167 (3%)

Query: 148 CRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPK 207
            R + LETVA +PG V G L HL S+R+F+   GWIK LLEE+ NERMHLMT + + +P 
Sbjct: 53  VRFVFLETVAGIPGAVAGGLRHLHSIRRFKLDQGWIKTLLEESYNERMHLMTFLAMYRPG 112

Query: 208 WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSG-----S 262
              R +V   QG+F+N  F+ YL+S    HR+VGYLE+EA+ +YT+ L ++D G     +
Sbjct: 113 RLMRFMVFAAQGIFYNTMFIGYLISLGFCHRLVGYLEDEAVATYTKCLAEMDKGWLPQWT 172

Query: 263 IENVPAPAIAIDYWRLPKD-ATLKDVITVIRADEAHHRDVNHFASDI 308
                 P IA+ YW++P+   T++D+I  IRADEA HR VNH   ++
Sbjct: 173 DPGFKIPDIAVQYWKMPEGRRTMRDLILYIRADEASHRGVNHTLGNL 219


>gi|145548257|ref|XP_001459809.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124427636|emb|CAK92412.1| unnamed protein product [Paramecium tetraurelia]
          Length = 266

 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 87/218 (39%), Positives = 122/218 (55%), Gaps = 19/218 (8%)

Query: 115 KHHVPTTFLDKVAYRTVKLLRIPTD--------------LFFQRRYGCRAMMLETVAAVP 160
           +H    TF D  AY  ++ +R+  D              L  ++++  R + LETVA VP
Sbjct: 41  EHKTAITFGDHFAYYFIQSMRLGFDVMSGYKKTLPFQSELVSEKKWINRVLFLETVAGVP 100

Query: 161 GMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGV 220
           G V GM  HL+SLR  +   GWI  LLEEAENER+HL+T + + KP    R  V+  Q  
Sbjct: 101 GFVAGMHRHLRSLRGMKRDQGWIHTLLEEAENERIHLLTFLNIKKPSLIFRTGVVLAQAW 160

Query: 221 FFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDS-----GSIENVPAPAIAIDY 275
           +   F V Y+  P++ HR+VGYLEEEA+ +YT  + +I+       S     A   +I+Y
Sbjct: 161 YVALFGVAYIFWPRVCHRIVGYLEEEAVKTYTHMIHEIEREGSPIHSWTTRKANQNSIEY 220

Query: 276 WRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGK 313
           W L ++ATL DV+  IR DE HH+DVNH+ +D   Q K
Sbjct: 221 WGLDENATLLDVVKAIRKDEEHHKDVNHYFADDYTQSK 258


>gi|388509390|gb|AFK42761.1| unknown [Lotus japonicus]
          Length = 176

 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 67/108 (62%), Positives = 82/108 (75%)

Query: 57  SSESVPEKVKEKGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKH 116
           S E   E  +    N  V  SYWGI+RPK+ REDG+ WPWNCF PW++YRAD+SID+ KH
Sbjct: 46  SEEKKSEVNRNDSSNNTVVPSYWGITRPKVRREDGTEWPWNCFSPWDSYRADVSIDVTKH 105

Query: 117 HVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVG 164
           H+P T  DKVA+R VK LR+ +DL+F+ RYGC AMMLET+AAVPGMVG
Sbjct: 106 HLPKTVTDKVAFRAVKFLRVLSDLYFKERYGCHAMMLETIAAVPGMVG 153


>gi|354548355|emb|CCE45091.1| hypothetical protein CPAR2_700950 [Candida parapsilosis]
          Length = 370

 Score =  155 bits (392), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 83/221 (37%), Positives = 122/221 (55%), Gaps = 27/221 (12%)

Query: 116 HHVPTTFLDKVAYRTVKLLRI---------------PTDLFFQRRYG-------CRAMML 153
           H  P T  DK+AY      R                P D +   RY         R + L
Sbjct: 111 HRKPETIGDKIAYHGTMFCRACFDFVTGYKVPKEGEPLDKYVGTRYEMTEGKWMTRVIFL 170

Query: 154 ETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERML 213
           E++A VPG V   L  L SLR  +    WI+ L +EA NERMHL+T +++ +P W+ + +
Sbjct: 171 ESIAGVPGSVASFLRTLHSLRLLKRDKAWIETLQDEAYNERMHLLTFIKIGQPSWFTKTI 230

Query: 214 VLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGS----IENVPAP 269
           +   QGVF N FF  YL +PK  HR VGYLEEEA+ +YT  L ++D  +     +++  P
Sbjct: 231 IYLGQGVFTNLFFFCYLTNPKYCHRFVGYLEEEAVRTYTHLLDELDDPNKLKDFQSMLIP 290

Query: 270 AIAIDYW-RLPKDATLKDVITVIRADEAHHRDVNHFASDIQ 309
            IA++YW  L ++++ KD+I  IRADE+ HR+VNH  ++++
Sbjct: 291 TIAVNYWPSLSEESSFKDLILRIRADESKHREVNHTLANLK 331


>gi|403355071|gb|EJY77103.1| hypothetical protein OXYTRI_01266 [Oxytricha trifallax]
          Length = 275

 Score =  155 bits (391), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 84/204 (41%), Positives = 118/204 (57%), Gaps = 11/204 (5%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDLF----FQRRYGC----RAMMLETVAAVPGMVGGML 167
           H  P  F DK A RTV L+ +  +       Q+R       R + LE +  VPG+V G  
Sbjct: 41  HREPQNFTDKFALRTVGLMEVIMNALTGKDHQKRTTTQWYNRFIFLEALGIVPGLVAGTA 100

Query: 168 LHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFV 227
            HL+SL   +     I  LLEEAENER HL   + L KP    +  +   Q + +N FF+
Sbjct: 101 KHLRSLSSMKPDRAMIHLLLEEAENERTHLFLFMNLRKPGMLIKFGIAAKQFLLWNIFFI 160

Query: 228 LYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGS---IENVPAPAIAIDYWRLPKDATL 284
            YL+SP   HR VGY+EEE+I +YT +LK IDSG+   ++N+ AP +A DY+ LP DA  
Sbjct: 161 SYLISPYYVHRFVGYMEEESIFNYTMFLKQIDSGNLKELQNMEAPQLAKDYYNLPADAKF 220

Query: 285 KDVITVIRADEAHHRDVNHFASDI 308
           +D++  IRADE+ HR+ NH+  ++
Sbjct: 221 RDMVLSIRADESLHREFNHYFCEL 244


>gi|385304059|gb|EIF48094.1| alternative oxidase mitochondrial precursor [Dekkera bruxellensis
           AWRI1499]
          Length = 374

 Score =  154 bits (389), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 77/182 (42%), Positives = 116/182 (63%), Gaps = 9/182 (4%)

Query: 149 RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKW 208
           R ++LE++A +PG V G L HL+S+R  +    +I+ LL+EA NERMHL+T ++L KP  
Sbjct: 171 RFIVLESIAGIPGSVAGFLRHLQSIRLMRRDKAFIETLLDEAYNERMHLLTFMKLGKPGR 230

Query: 209 YERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSG---SIEN 265
           + R+++   QG+F N FF+ Y++ PK+ HR VGYLEEEA+ +YT  L+D+  G    + +
Sbjct: 231 FARLMLWFGQGIFANLFFLTYIIRPKICHRFVGYLEEEAVLTYTRCLQDMRMGLNPQLYH 290

Query: 266 VPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQ------GKELRDAP 319
              P IA DYW L    T  D+I  IRADEA HR+VNH  ++++ +       K++ + P
Sbjct: 291 TGIPQIAKDYWHLTNKDTFYDMILYIRADEAKHREVNHTFANLKLRQDRNPFAKDVPNDP 350

Query: 320 AP 321
            P
Sbjct: 351 RP 352


>gi|448535195|ref|XP_003870925.1| Aox1 alternative oxidase [Candida orthopsilosis Co 90-125]
 gi|380355281|emb|CCG24798.1| Aox1 alternative oxidase [Candida orthopsilosis]
          Length = 370

 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 84/224 (37%), Positives = 124/224 (55%), Gaps = 27/224 (12%)

Query: 116 HHVPTTFLDKVAYRTVKLLR----------IPT-----DLFFQRRYG-------CRAMML 153
           H  P T  DK+AY      R          +P      D +   RY         R + L
Sbjct: 111 HRKPRTIGDKIAYHGTMFCRSCFDFVTGYKVPKSGESLDKYKGTRYEMTEGKWMTRVIFL 170

Query: 154 ETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERML 213
           E++A VPG V   L  L SLR  +    WI+ L +EA NERMHL+T +++ +P W+ + +
Sbjct: 171 ESIAGVPGSVASFLRTLHSLRLLKRDKAWIETLQDEAYNERMHLLTFIKIGQPSWFTKTI 230

Query: 214 VLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGS----IENVPAP 269
           +   QGVF N FF  YL +PK  HR VGYLEEEA+ +YT  L +++  +     +N+  P
Sbjct: 231 IYLGQGVFTNLFFFCYLANPKYCHRFVGYLEEEAVRTYTHLLDELEDPNKLKDFQNMLIP 290

Query: 270 AIAIDYW-RLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQG 312
            IA++YW  L ++++ KD+I  IRADE+ HR+VNH  ++++  G
Sbjct: 291 TIAVNYWPSLTEESSFKDLILRIRADESKHREVNHTLANLKQDG 334


>gi|33087085|gb|AAP92756.1| alternative oxidase 1c [Solanum lycopersicum]
          Length = 87

 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 71/87 (81%), Positives = 80/87 (91%)

Query: 153 LETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERM 212
           LETVAAVPGMVGGMLLH KSLR+F+HSGGWIKALLEEAENERMHLMT +E+ KPKWYER 
Sbjct: 1   LETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVSKPKWYERG 60

Query: 213 LVLTVQGVFFNAFFVLYLLSPKLAHRV 239
           LVL VQG+FFN +F+ Y+LSPKLAHR+
Sbjct: 61  LVLMVQGIFFNVYFMTYILSPKLAHRI 87


>gi|397914078|gb|AFO70090.1| alternative oxidase, partial [Fusarium solani]
          Length = 237

 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 66/125 (52%), Positives = 93/125 (74%)

Query: 149 RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKW 208
           R + LE++A VPGMVGGML HL SLR+ +   GWI+ LLEE+ NERMHL+T +++ +P W
Sbjct: 91  RFIFLESIAGVPGMVGGMLRHLGSLRRMKRDNGWIETLLEESYNERMHLLTFMKMCEPGW 150

Query: 209 YERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPA 268
           + +M+++  QGVFFN+ FV YL+SPK+ HR VGYLEEEA+H+YT  +K+I+ G++     
Sbjct: 151 FMKMMIIGAQGVFFNSLFVSYLISPKIVHRFVGYLEEEAVHTYTRCIKEIEDGNLPKWND 210

Query: 269 PAIAI 273
           P   I
Sbjct: 211 PKFGI 215


>gi|2662190|dbj|BAA23725.1| alternative oxidase [Chlamydomonas sp. W80]
          Length = 155

 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 75/141 (53%), Positives = 96/141 (68%), Gaps = 7/141 (4%)

Query: 183 IKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGY 242
           ++ALLEEAENERMHL+T +E+ +P W  R  VL  QG +FN FF+ YL+SPK  H VVGY
Sbjct: 5   LQALLEEAENERMHLLTFLEMRQPSWMFRAAVLLAQGAYFNMFFISYLISPKFCHAVVGY 64

Query: 243 LEEEAIHSYTEYLKDIDSGSI-ENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDV 301
           LEEEA+ +YT  L DID+G + ++ PAP   I YW+L  DAT++D+I  +RADEA H  V
Sbjct: 65  LEEEAVKTYTHLLHDIDAGHVWKDKPAPKTGIAYWKLSPDATMRDLILAVRADEASHSLV 124

Query: 302 NHFASDIQFQGKELRDAPAPL 322
           NH  S+I        DAP P 
Sbjct: 125 NHTLSEIP------SDAPNPF 139


>gi|397914084|gb|AFO70093.1| alternative oxidase, partial [Fusarium pseudocircinatum]
          Length = 230

 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 67/125 (53%), Positives = 93/125 (74%)

Query: 149 RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKW 208
           R + LE+VA VPGMVGGML HL SLR+ +   GWI+ LLEE+ NERMHL+T +++ +P W
Sbjct: 92  RFIFLESVAGVPGMVGGMLRHLGSLRRMKRDNGWIETLLEESYNERMHLLTFMKMCEPGW 151

Query: 209 YERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPA 268
           + +M+++  QGVFFN+ FV YL+SPK+ HR VGYLEEEA+H+YT  +K+I+ G++     
Sbjct: 152 FMKMMIIGAQGVFFNSLFVSYLVSPKIVHRFVGYLEEEAVHTYTRCIKEIEDGNLPKWSD 211

Query: 269 PAIAI 273
           P   I
Sbjct: 212 PKFQI 216


>gi|397914094|gb|AFO70098.1| alternative oxidase, partial [Fusarium pseudocircinatum]
          Length = 230

 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 67/125 (53%), Positives = 93/125 (74%)

Query: 149 RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKW 208
           R + LE+VA VPGMVGGML HL SLR+ +   GWI+ LLEE+ NERMHL+T +++ +P W
Sbjct: 92  RFIFLESVAGVPGMVGGMLRHLGSLRRMKRDNGWIETLLEESYNERMHLLTFMKMCEPGW 151

Query: 209 YERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPA 268
           + +M+++  QGVFFN+ FV YL+SPK+ HR VGYLEEEA+H+YT  +K+I+ G++     
Sbjct: 152 FMKMMIIGAQGVFFNSLFVSYLVSPKIVHRFVGYLEEEAVHTYTRCIKEIEDGNLPKWSD 211

Query: 269 PAIAI 273
           P   I
Sbjct: 212 PKFQI 216


>gi|397914082|gb|AFO70092.1| alternative oxidase, partial [Fusarium solani]
          Length = 237

 Score =  151 bits (382), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 66/125 (52%), Positives = 93/125 (74%)

Query: 149 RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKW 208
           R + LE++A VPGMVGGML HL SLR+ +   GWI+ LLEE+ NERMHL+T +++ +P W
Sbjct: 91  RFIFLESIAGVPGMVGGMLRHLGSLRRMKRDNGWIETLLEESYNERMHLLTFMKMCEPGW 150

Query: 209 YERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPA 268
           + +M+++  QGVFFN+ FV YL+SPK+ HR VGYLEEEA+H+YT  +K+I+ G++     
Sbjct: 151 FMKMMIIGAQGVFFNSLFVSYLISPKIVHRFVGYLEEEAVHTYTRCIKEIEDGNLPKWND 210

Query: 269 PAIAI 273
           P   I
Sbjct: 211 PKFGI 215


>gi|146412117|ref|XP_001482030.1| hypothetical protein PGUG_05793 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 347

 Score =  150 bits (379), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 86/241 (35%), Positives = 132/241 (54%), Gaps = 34/241 (14%)

Query: 115 KHHVPTTFLDKVAYRTVKLLRIPTDL-----------------------FFQRRYGCRAM 151
           +H  P    D +A+R V   R   D+                         + ++  R +
Sbjct: 88  EHREPRNVSDTIAFRGVNFFRWCFDMVTGYKKPRNDHDLETGFKGTRWEMTENKWLTRII 147

Query: 152 MLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYER 211
            LE++A VPGMV   L HL SLR  +    WI+ LL+EA NERMHL+T ++L +P W+ R
Sbjct: 148 FLESIAGVPGMVAAFLRHLHSLRLLKRDRAWIETLLDEAYNERMHLLTFIKLGQPSWFTR 207

Query: 212 MLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPA 268
            ++   QGVF NAFF+ YL+ PK  HR VGY+EEEA+ +Y+  + ++D+  +   +++  
Sbjct: 208 FIIYVGQGVFCNAFFLCYLMVPKYCHRFVGYIEEEAVSTYSHLVYELDTKKLPKFDHMRV 267

Query: 269 PAIAIDYW-RLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGK-------ELRDAPA 320
           P +AI YW  L +++T +D+I  +RADEA HR+VNH  +++    +       E  D P 
Sbjct: 268 PPVAIQYWTELDENSTFRDLILRVRADEAKHREVNHTLANLDLTDRNPFAMKIEEVDKPQ 327

Query: 321 P 321
           P
Sbjct: 328 P 328


>gi|348681989|gb|EGZ21805.1| hypothetical protein PHYSODRAFT_247287 [Phytophthora sojae]
          Length = 297

 Score =  150 bits (379), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 92/210 (43%), Positives = 126/210 (60%), Gaps = 15/210 (7%)

Query: 87  TREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFL-DKVAYRTVKLLRI--------- 136
           T E+G P  W   +    Y  D    +++ H P   + ++VAY  VK LR          
Sbjct: 89  TSENGEPI-WENPINHAVYDLDKIATMEQTHHPIVKMHERVAYMAVKALRTGFDVISGYR 147

Query: 137 -PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERM 195
            P     ++ +  R + LE+VA VPGMVGGML HL+SLR  +   GWI  LLEEAENERM
Sbjct: 148 GPGGAMTEKDWLNRCLFLESVAGVPGMVGGMLRHLRSLRLLKRDYGWIHTLLEEAENERM 207

Query: 196 HLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYL 255
           HL+  + + +P ++ R LV+  QGVFFN FF+ YL+SPK  HR VGYLEEEA+ +Y+  L
Sbjct: 208 HLLIFMNIKQPGYFFRALVVGAQGVFFNGFFLTYLVSPKTCHRFVGYLEEEAVKTYSCLL 267

Query: 256 KDIDSGSIE---NVPAPAIAIDYWRLPKDA 282
           +DI+ G ++      AP IA  Y++LP+DA
Sbjct: 268 QDIEDGHLDAWKEKKAPLIAQTYYKLPEDA 297


>gi|302411548|ref|XP_003003607.1| alternative oxidase [Verticillium albo-atrum VaMs.102]
 gi|261357512|gb|EEY19940.1| alternative oxidase [Verticillium albo-atrum VaMs.102]
          Length = 334

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 80/234 (34%), Positives = 126/234 (53%), Gaps = 41/234 (17%)

Query: 101 PWETY-RADLSIDLKKHHVPTTFLDKVAYRTVKLLR------------------------ 135
           P E Y  AD+   +  H  P T+ D  A++ V++ R                        
Sbjct: 84  PHEGYSEADMLAVVPGHRAPETWGDWAAWKFVRVARWTMDRATGLKPEQQVDKKNPTTAV 143

Query: 136 IPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERM 195
           +  +   + ++  R + LE++A VPGMV GML HL SLR+ +   GWI+ LLEE+ NERM
Sbjct: 144 VANEPLTEAQWLVRFIFLESIAGVPGMVAGMLRHLGSLRRMKRDNGWIETLLEESYNERM 203

Query: 196 HLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYL 255
           HL+T +++ +P W+ +++++  QGVFFN  F+ YL+SPK+ HR VGYLEEEA+H+Y+  +
Sbjct: 204 HLLTFMKMSEPGWFMKVMLIGAQGVFFNGMFLSYLVSPKITHRFVGYLEEEAVHTYSRCI 263

Query: 256 KDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQ 309
           ++I+ G +     P +    W+                 +A HR VNH  S++ 
Sbjct: 264 REIEEGQLPKWSDPNLTFPTWQC----------------KAVHRGVNHTLSNLN 301


>gi|397914080|gb|AFO70091.1| alternative oxidase, partial [Fusarium solani]
          Length = 236

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 65/125 (52%), Positives = 92/125 (73%)

Query: 149 RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKW 208
           R + LE++A VPGMVGGML HL SLR+ +   GWI+ LLEE+ NERMHL+T +++ +P W
Sbjct: 90  RFIFLESIAGVPGMVGGMLRHLGSLRRMKRDNGWIETLLEESYNERMHLLTFMKMCEPGW 149

Query: 209 YERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPA 268
           + + +++  QGVFFN+ FV YL+SPK+ HR VGYLEEEA+H+YT  +K+I+ G++     
Sbjct: 150 FMKTMIIGAQGVFFNSLFVSYLISPKIVHRFVGYLEEEAVHTYTRCIKEIEDGNLPKWND 209

Query: 269 PAIAI 273
           P   I
Sbjct: 210 PKFGI 214


>gi|190349103|gb|EDK41695.2| hypothetical protein PGUG_05793 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 347

 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 127/221 (57%), Gaps = 27/221 (12%)

Query: 115 KHHVPTTFLDKVAYRTVKLLRIPTDL-----------------------FFQRRYGCRAM 151
           +H  P    D +A+R V   R   D+                         + ++  R +
Sbjct: 88  EHREPRNVSDTIAFRGVNFFRWCFDMVTGYKKPRNDHDLETGFKGTRWEMTENKWLTRII 147

Query: 152 MLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYER 211
            LE++A VPGMV   L HL SLR  +    WI+ LL+EA NERMHL+T ++L +P W+ R
Sbjct: 148 FLESIAGVPGMVAAFLRHLHSLRLLKRDRAWIETLLDEAYNERMHLLTFIKLGQPSWFTR 207

Query: 212 MLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPA 268
            ++   QGVF NAFF+ YL+ PK  HR VGY+EEEA+ +Y+  + ++D+  +   +++  
Sbjct: 208 FIIYVGQGVFCNAFFLCYLMVPKYCHRFVGYIEEEAVSTYSHLVYELDTKKLPKFDHMRV 267

Query: 269 PAIAIDYW-RLPKDATLKDVITVIRADEAHHRDVNHFASDI 308
           P +AI YW  L +++T +D+I  +RADEA HR+VNH  +++
Sbjct: 268 PPVAIQYWTELDENSTFRDLILRVRADEAKHREVNHTLANL 308


>gi|149239580|ref|XP_001525666.1| alternative oxidase 1, mitochondrial precursor [Lodderomyces
           elongisporus NRRL YB-4239]
 gi|146451159|gb|EDK45415.1| alternative oxidase 1, mitochondrial precursor [Lodderomyces
           elongisporus NRRL YB-4239]
          Length = 390

 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 90/239 (37%), Positives = 130/239 (54%), Gaps = 31/239 (12%)

Query: 99  FMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDL------------------ 140
           + P E Y  +++     H  P  F +K  Y  +K  R   DL                  
Sbjct: 120 YSPAELYGVEVT-----HKTPANFREKFCYGLIKTCRFWFDLVTGYAEPKTGDPNEYKGT 174

Query: 141 ---FFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHL 197
                + ++  R + LE++A VPG V   L  L+SLR  +   G+I+  LEEAE ERMHL
Sbjct: 175 RWEMTESKWMTRIIFLESIAGVPGSVAAFLRQLQSLRLLKRDRGFIQTYLEEAEQERMHL 234

Query: 198 MTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKD 257
           +  +++ KP  + R ++   QGVF NAFF+ Y+ +P  A  +VGY+EEEA H+YTE LKD
Sbjct: 235 LVALKIGKPSLFTRAIMYVGQGVFANAFFLTYMANPNAAASIVGYIEEEACHTYTELLKD 294

Query: 258 IDSGS----IENVPAPAIAIDYW-RLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQ 311
           +D+       EN+  P IA++YW  L   +T KD+I  IRADEA HR+VNH  +++  Q
Sbjct: 295 LDNKGKFPIFENMTIPKIAVEYWPGLNHQSTFKDLILQIRADEAKHREVNHTFANLDLQ 353


>gi|290972516|ref|XP_002668998.1| alternative oxidase [Naegleria gruberi]
 gi|284082538|gb|EFC36254.1| alternative oxidase [Naegleria gruberi]
          Length = 362

 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 80/171 (46%), Positives = 106/171 (61%), Gaps = 6/171 (3%)

Query: 150 AMMLETVAAVPGMVGGMLLHLKSLR-----KFQHSGGWIKALLEEAENERMHLMTMVELV 204
           ++ LET++A PGMVGGM  H  SLR     + +     + ALLEEAEN RMH++ ++E+ 
Sbjct: 186 SVFLETMSATPGMVGGMWRHFASLRSKPIDRCKKEHLRVGALLEEAENHRMHMLVLLEMT 245

Query: 205 KPKWYERMLVLTVQGVFFNAFFVLYLLSPK-LAHRVVGYLEEEAIHSYTEYLKDIDSGSI 263
                ER+L++  Q  F   +F +Y L+ K  +HR VGYL E A+ SY   LK ID   I
Sbjct: 246 HQNILERILMVVAQLSFSQYYFYIYSLAGKTFSHRFVGYLAETAVESYGLVLKQIDEKKI 305

Query: 264 ENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKE 314
            N PAP +AI+YW LPK+ATL+DVI  IR DE  HR+ NH  SD  +  KE
Sbjct: 306 ANPPAPEMAINYWNLPKNATLRDVILAIRMDECKHREFNHALSDEIYFEKE 356


>gi|126668999|ref|ZP_01739937.1| putative oxidase [Marinobacter sp. ELB17]
 gi|126626548|gb|EAZ97207.1| putative oxidase [Marinobacter sp. ELB17]
          Length = 142

 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 70/126 (55%), Positives = 92/126 (73%), Gaps = 2/126 (1%)

Query: 113 LKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKS 172
           L KHH P+ F D+VA+R  +LLR   DLFF +RYG RA++LETVAAVPGMVGGM+ H++S
Sbjct: 17  LSKHHTPSGFSDRVAFRLTRLLRFFADLFFAKRYGHRAVVLETVAAVPGMVGGMVGHMRS 76

Query: 173 LRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFF--VLYL 230
           LR+ + +  WI  LLEEAENERMHLMT V++ +P   ER+L+L  QG F  AF+   L+L
Sbjct: 77  LRRMEDNREWIHTLLEEAENERMHLMTFVQIAQPSVLERVLILLAQGFFLPAFYFSTLFL 136

Query: 231 LSPKLA 236
            +P + 
Sbjct: 137 AAPHIG 142


>gi|18642678|gb|AAL76179.1|AC074105_13 Putative alternative oxidase [Oryza sativa]
          Length = 243

 Score =  144 bits (362), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 76/143 (53%), Positives = 92/143 (64%), Gaps = 24/143 (16%)

Query: 183 IKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGY 242
           +  + EEAENE+MHLMT +E+ K     R + +T+  V  N F                 
Sbjct: 125 VGGVDEEAENEQMHLMTFMEVAKL----RCIDVTIFFVATNDF----------------- 163

Query: 243 LEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVN 302
               +  SYTEYLKDI++G IENVP P IAIDYWRLP DATLKDV+ V+ ADEAHHRDVN
Sbjct: 164 ---SSSDSYTEYLKDIEAGKIENVPTPPIAIDYWRLPADATLKDVVVVVCADEAHHRDVN 220

Query: 303 HFASDIQFQGKELRDAPAPLGYH 325
           HFASD+ FQG +L+D PA L YH
Sbjct: 221 HFASDVHFQGMDLKDTPALLDYH 243


>gi|163796586|ref|ZP_02190545.1| Alternative oxidase [alpha proteobacterium BAL199]
 gi|159178146|gb|EDP62691.1| Alternative oxidase [alpha proteobacterium BAL199]
          Length = 146

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 68/128 (53%), Positives = 86/128 (67%)

Query: 195 MHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEY 254
           MHLMT V++ +P   ER +++  Q VF+N +F LYL +PK AHR+V Y EEEA++SYT Y
Sbjct: 1   MHLMTFVQVAQPTILERGIIMLTQAVFYNFYFFLYLFAPKTAHRMVAYFEEEAVNSYTNY 60

Query: 255 LKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKE 314
           L DID+G   N PAP IAI YW L  DATL+DV+  +RADEA HRD NH  +D      E
Sbjct: 61  LADIDAGRHPNPPAPEIAIKYWDLAPDATLRDVVLAVRADEAGHRDRNHDFADQLVGPSE 120

Query: 315 LRDAPAPL 322
              APA +
Sbjct: 121 PSSAPAAI 128


>gi|33328283|gb|AAQ09592.1| alternative oxidase [Cryptosporidium parvum]
          Length = 144

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 71/144 (49%), Positives = 95/144 (65%), Gaps = 3/144 (2%)

Query: 162 MVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELV-KPKWYERMLVLTVQGV 220
           MVG ML H  SLRK +   GWI  LLEEAENERMHL+  ++L+ KP    R+ V+  Q  
Sbjct: 1   MVGAMLRHFSSLRKMKRDNGWIHTLLEEAENERMHLLISLQLINKPSILTRVSVIGTQFA 60

Query: 221 FFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENV--PAPAIAIDYWRL 278
           F   + V Y++SPK +HR VGYLEEEA+ +YT  +++ID G +      AP  A  Y+ L
Sbjct: 61  FLIFYTVFYIISPKYSHRFVGYLEEEAVSTYTHLIEEIDKGLLPGFERKAPKFASVYYGL 120

Query: 279 PKDATLKDVITVIRADEAHHRDVN 302
           P+DAT++D+   +R DE+HHRDVN
Sbjct: 121 PEDATIRDLFLAMRRDESHHRDVN 144


>gi|295646739|gb|ADG23120.1| alternative oxidase [Rhizoplaca chrysoleuca]
          Length = 180

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 61/121 (50%), Positives = 87/121 (71%)

Query: 143 QRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVE 202
           +R++  R + LE+VA VPGMV   + HL SLR+ +   GWI+ LLEEA NERMHL+T ++
Sbjct: 52  ERKWLIRFLFLESVAGVPGMVAASIRHLHSLRRLKRDNGWIETLLEEAYNERMHLLTFMK 111

Query: 203 LVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGS 262
           + +P  + ++++L  QGVF+N FF  YLLSP+  HR VGYLEEEA+ +YT  L D+D+G 
Sbjct: 112 IAEPGRFMKLMILGAQGVFYNGFFFAYLLSPRTCHRFVGYLEEEAVLTYTRVLADLDAGR 171

Query: 263 I 263
           +
Sbjct: 172 L 172


>gi|14599474|gb|AAK70935.1| alternative oxidase 1a [Mangifera indica]
          Length = 78

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 62/78 (79%), Positives = 71/78 (91%)

Query: 162 MVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVF 221
           MVGGMLLH KSLRKF+HSGGWIKALLEEAENERMHLMT +E+ +P+WYER LV TVQGVF
Sbjct: 1   MVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFMEVAQPRWYERALVFTVQGVF 60

Query: 222 FNAFFVLYLLSPKLAHRV 239
           FNA+F+ YL+SPK AHR+
Sbjct: 61  FNAYFLGYLISPKFAHRM 78


>gi|428172811|gb|EKX41717.1| hypothetical protein GUITHDRAFT_153725, partial [Guillardia theta
           CCMP2712]
          Length = 232

 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 74/149 (49%), Positives = 91/149 (61%), Gaps = 9/149 (6%)

Query: 113 LKKHHV-PTTFLDKVAYRTVKLLRIPTDLFFQRRYGC--------RAMMLETVAAVPGMV 163
           +KK HV P    D +A   V+  R   D     + G         RA+ LETVA VPGMV
Sbjct: 84  VKKTHVDPHDRADSLALSAVQAARWTFDTLSGYKIGNITESKVINRAIFLETVAGVPGMV 143

Query: 164 GGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFN 223
           GGML HL+SLR      GWI  LLEEAENERMHL+T V + KP    R+ V+  QG+F N
Sbjct: 144 GGMLRHLRSLRTMNRDHGWIHTLLEEAENERMHLLTFVTIKKPGPIFRLAVIGTQGIFMN 203

Query: 224 AFFVLYLLSPKLAHRVVGYLEEEAIHSYT 252
            FF+ Y++ PK+ HR VGYLEEEA+ +YT
Sbjct: 204 LFFLTYMVYPKICHRFVGYLEEEAVKTYT 232


>gi|218198261|gb|EEC80688.1| hypothetical protein OsI_23112 [Oryza sativa Indica Group]
          Length = 91

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 59/76 (77%), Positives = 66/76 (86%)

Query: 250 SYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQ 309
           SYTEYLKDI++G IENVP P IAIDYWRLP DATLKDV+ V+RADEAHHRDVNHFASD+ 
Sbjct: 16  SYTEYLKDIEAGKIENVPTPPIAIDYWRLPADATLKDVVVVVRADEAHHRDVNHFASDVH 75

Query: 310 FQGKELRDAPAPLGYH 325
           FQG +L+D PA L YH
Sbjct: 76  FQGMDLKDTPALLDYH 91


>gi|110288605|gb|ABB46743.2| transposon protein, putative, unclassified [Oryza sativa Japonica
           Group]
          Length = 264

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 58/76 (76%), Positives = 65/76 (85%)

Query: 250 SYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQ 309
           SYTEYLKDI++G IENVP P IAIDYWRLP DATLKDV+ V+ ADEAHHRDVNHFASD+ 
Sbjct: 189 SYTEYLKDIEAGKIENVPTPPIAIDYWRLPADATLKDVVVVVCADEAHHRDVNHFASDVH 248

Query: 310 FQGKELRDAPAPLGYH 325
           FQG +L+D PA L YH
Sbjct: 249 FQGMDLKDTPALLDYH 264


>gi|238684059|gb|ACR54258.1| alternative oxidase, partial [Mercenaria mercenaria]
          Length = 109

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 61/109 (55%), Positives = 80/109 (73%), Gaps = 3/109 (2%)

Query: 186 LLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEE 245
           LLEEAENERMHLMT ++L +P    +  V+  QGVF   F V YL+SP+  HR VGYLEE
Sbjct: 1   LLEEAENERMHLMTALQLKQPSRLFKWCVIGTQGVFVGMFSVWYLISPRFCHRFVGYLEE 60

Query: 246 EAIHSYTEYLKDIDSGSIEN---VPAPAIAIDYWRLPKDATLKDVITVI 291
           EA+ +YT+ L+DI+SG++E+    P+P +AI YW LP+DAT+KDVI  I
Sbjct: 61  EAVKTYTKCLEDIESGALEHWKTQPSPEVAITYWNLPEDATMKDVILAI 109


>gi|238684055|gb|ACR54256.1| alternative oxidase [Anadara ovalis]
          Length = 109

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 59/109 (54%), Positives = 79/109 (72%), Gaps = 3/109 (2%)

Query: 186 LLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEE 245
           LLEEAENERMHLMT ++L +P W  R  V+  QGVF  +F + YL+SP+  HR VGYLEE
Sbjct: 1   LLEEAENERMHLMTALQLKQPSWLLRQCVVLAQGVFVTSFSLSYLVSPRFCHRFVGYLEE 60

Query: 246 EAIHSYTEYLKDIDSGSIE---NVPAPAIAIDYWRLPKDATLKDVITVI 291
           EA+ +YT+ L+DI+ G++E     PAP +A+ YW+L   AT+KDVI +I
Sbjct: 61  EAVKTYTKCLEDIEEGTMEIWKTKPAPDVAVRYWKLDPAATMKDVILMI 109


>gi|14599478|gb|AAK70937.1| alternative oxidase 1c [Mangifera indica]
          Length = 78

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 56/76 (73%), Positives = 64/76 (84%)

Query: 164 GGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFN 223
           GGMLLH KSLRKF+H GGWIKALLEEAENER HLM  VE+ KP+WYER L+L VQGVF N
Sbjct: 3   GGMLLHFKSLRKFEHRGGWIKALLEEAENERTHLMIFVEVAKPRWYERALILRVQGVFLN 62

Query: 224 AFFVLYLLSPKLAHRV 239
           A+ + YL+SPK AHR+
Sbjct: 63  AYSLGYLISPKFAHRI 78


>gi|294462859|gb|ADE76971.1| unknown [Picea sitchensis]
          Length = 240

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 56/81 (69%), Positives = 63/81 (77%), Gaps = 3/81 (3%)

Query: 63  EKVKEKGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTF 122
           EK+KEKG   +V S YWG+S  K +R+DGS WPWN F PWETY  D+SIDLKKHHVP TF
Sbjct: 144 EKLKEKG---LVYSRYWGLSPAKFSRKDGSSWPWNSFRPWETYTPDMSIDLKKHHVPKTF 200

Query: 123 LDKVAYRTVKLLRIPTDLFFQ 143
           LDK AY TVK LR PTD+FFQ
Sbjct: 201 LDKFAYWTVKSLRFPTDVFFQ 221


>gi|238684053|gb|ACR54255.1| alternative oxidase [Crassostrea virginica]
          Length = 109

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 58/109 (53%), Positives = 76/109 (69%), Gaps = 3/109 (2%)

Query: 186 LLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEE 245
           LLEEAENERMHLMT ++L +P W  RM V+  QG F   F   YLLSP+  HR VGYLEE
Sbjct: 1   LLEEAENERMHLMTALQLRQPSWLFRMGVIVSQGTFVTMFSGAYLLSPRFCHRFVGYLEE 60

Query: 246 EAIHSYTEYLKDIDSGSI---ENVPAPAIAIDYWRLPKDATLKDVITVI 291
           EA+ +Y++ LKDI+SG +   +   AP +A  YW+LP+ A++KDV+  I
Sbjct: 61  EAVFTYSKCLKDIESGPLKHWQTQKAPDVATRYWKLPETASMKDVVLAI 109


>gi|323456007|gb|EGB11874.1| hypothetical protein AURANDRAFT_70672 [Aureococcus anophagefferens]
          Length = 3210

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/181 (37%), Positives = 96/181 (53%), Gaps = 12/181 (6%)

Query: 149  RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKW 208
            R ++LE+ A VPG V     H  SLR+ +   G I   LEEAENERMHL+  +++ +   
Sbjct: 3015 RLIILESFAGVPGFVAAGFRHFYSLRELKRDHGAIFTFLEEAENERMHLLVCMKMFEASP 3074

Query: 209  YERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDS------GS 262
              R LV+  Q          Y  SP+  HR VGYLEE A+ +Y   ++   +      G+
Sbjct: 3075 ATRALVVAAQFTMTPLLCATYAASPRAMHRFVGYLEETAVMTYANLVEKAATPGTRLHGA 3134

Query: 263  IENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNH-FA-----SDIQFQGKELR 316
               + AP IA  YW+L  DA+  + +  + ADE+HHRDVNH FA     ++  F G  +R
Sbjct: 3135 WAGLDAPDIAKSYWKLDDDASWAECLRHMLADESHHRDVNHAFAELPRDAENPFIGDHMR 3194

Query: 317  D 317
            D
Sbjct: 3195 D 3195


>gi|238684057|gb|ACR54257.1| alternative oxidase, partial [Ephydatia muelleri]
          Length = 109

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 55/109 (50%), Positives = 76/109 (69%), Gaps = 3/109 (2%)

Query: 186 LLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEE 245
           LLE+AENERMHL+T + L KP  + R++V+  QGVF    +  Y +SP+  HR VGYLEE
Sbjct: 1   LLEDAENERMHLLTALALKKPGPFFRLIVMAGQGVFVTLXWASYQVSPRFCHRFVGYLEE 60

Query: 246 EAIHSYTEYLKDIDSGSIEN---VPAPAIAIDYWRLPKDATLKDVITVI 291
           +A+ +YTE L  ID+G ++    +PAP IA+ YW+L KDA ++DVI  I
Sbjct: 61  QAVGTYTECLHSIDNGDLKTWALLPAPPIAVQYWKLKKDAMMRDVILAI 109


>gi|340502185|gb|EGR28897.1| hypothetical protein IMG5_166900 [Ichthyophthirius multifiliis]
          Length = 398

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/151 (41%), Positives = 89/151 (58%), Gaps = 1/151 (0%)

Query: 127 AYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKAL 186
            Y+ +   +  T    ++++  R + LETVA VPG V  M  +L SLR  Q   GWI  L
Sbjct: 3   GYKQIFPWQDKTKPISEKKWLNRMLFLETVAGVPGFVAAMHRNLTSLRNMQRDYGWIHTL 62

Query: 187 LEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEE 246
           LEEAENERMHL+T +++ KP    RM V+  Q  +   F +LY+  PK+ HRVVGYLEEE
Sbjct: 63  LEEAENERMHLLTFMKVQKPSPLFRMGVVFAQFGYVGLFSILYMFFPKVCHRVVGYLEEE 122

Query: 247 AIHSYTEYLKDIDS-GSIENVPAPAIAIDYW 276
           A+ +YT  ++ +    + + + A  I+  YW
Sbjct: 123 AVKTYTHCIEVLSPISNWKTIMATQISRKYW 153


>gi|238487558|ref|XP_002375017.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
 gi|220699896|gb|EED56235.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
          Length = 142

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 50/103 (48%), Positives = 74/103 (71%), Gaps = 4/103 (3%)

Query: 211 RMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVP 267
           R++VL  QGVFFN FF+ YL+SP++ HR VGYLEEEA+ +YT  ++DI+ G +     + 
Sbjct: 2   RLMVLGAQGVFFNGFFLSYLMSPRICHRFVGYLEEEAVLTYTRAIQDIEHGKLPKWTKLE 61

Query: 268 APAIAIDYWRLPKDA-TLKDVITVIRADEAHHRDVNHFASDIQ 309
           AP IA+ YW++P+   T+KD++  +RADEA HR+VNH   ++ 
Sbjct: 62  APEIAVQYWKMPEGQRTMKDLLMYVRADEAKHREVNHTLGNLN 104


>gi|407415182|gb|EKF36790.1| GTPase activating protein of Rab-like GTPase, putative [Trypanosoma
           cruzi marinkellei]
          Length = 372

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/215 (31%), Positives = 108/215 (50%), Gaps = 14/215 (6%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRK 175
           H  P  F D      VKLLR   D  F+ RY  RA ML+ +A  P + G M+ HL+++ K
Sbjct: 114 HSPPQRFTDHCCIYLVKLLRWCADKLFRERYLHRATMLKVIAPAPPLAGAMISHLRTILK 173

Query: 176 FQHSG---------GWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFF 226
            ++              + LL +AE+   H+  ++ + +  + ER+  L +Q + F  F 
Sbjct: 174 KENPAYIPGKGDFATETRGLLAQAESHASHIRILMLMTEITYVERVAALFLQAIHFAIFA 233

Query: 227 VLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKD 286
           +L+LLSP++A R++GYL EE++  +T  + DID G +     P  AI+YW L K   LK 
Sbjct: 234 LLFLLSPRVAFRLMGYLGEESVVIWTHMINDIDLGKVTERALPQDAIEYWGLHK---LK- 289

Query: 287 VITVIRADEAHHRDVNHFASDIQFQGKELRDAPAP 321
             T   A +    D++    +    GK  + + AP
Sbjct: 290 -YTRTSATDVKRFDLHEHGDEEATTGKHQQTSDAP 323


>gi|254450111|ref|ZP_05063548.1| alternative oxidase [Octadecabacter arcticus 238]
 gi|198264517|gb|EDY88787.1| alternative oxidase [Octadecabacter arcticus 238]
          Length = 86

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 50/80 (62%), Positives = 64/80 (80%), Gaps = 1/80 (1%)

Query: 230 LLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVIT 289
           +L+P++AHRVVGYLEEEA+ SYT+Y + ID+G+++NVP P IA  YW LP DA L+DV+ 
Sbjct: 1   MLAPRVAHRVVGYLEEEAVISYTQYHEKIDAGTVKNVPTPEIAKKYWNLPDDARLRDVVI 60

Query: 290 VIRADEAHHRDVNH-FASDI 308
           VIR DEA HRD NH FA+ I
Sbjct: 61  VIREDEAGHRDKNHDFANKI 80


>gi|71665747|ref|XP_819840.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70885159|gb|EAN97989.1| hypothetical protein, conserved [Trypanosoma cruzi]
 gi|219564532|dbj|BAH03832.1| alternative oxidase [Trypanosoma cruzi]
          Length = 366

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 93/174 (53%), Gaps = 9/174 (5%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRK 175
           H  P  F D      VKLLR   D  F+ RY  RA ML+ +A  P + G M+ HL+ + K
Sbjct: 111 HSPPQRFSDHCCIYLVKLLRWCADKLFRERYLHRATMLKVIAPAPPLAGAMISHLRMILK 170

Query: 176 FQH------SGGW---IKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFF 226
            ++       G +    + LL +AE+   H+  ++ L +  + ER+  + +Q + F  F 
Sbjct: 171 KENPAYIPGKGDFATETRGLLAQAESHASHIRILMLLTEITYVERVAAVFLQAIHFAIFA 230

Query: 227 VLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPK 280
            L+LLSP++A R++GYL EE++  +T  + DID G +     P  AI+YW L K
Sbjct: 231 FLFLLSPRVAFRLMGYLGEESVVIWTHMINDIDFGKVTERALPQDAIEYWGLHK 284


>gi|342184601|emb|CCC94083.1| unnamed protein product [Trypanosoma congolense IL3000]
          Length = 364

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 95/178 (53%), Gaps = 8/178 (4%)

Query: 109 LSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLL 168
           L  D   HH P  + D     +VK LR   D  F+ RY  RA ML+T+A  P + G  + 
Sbjct: 92  LERDPLSHHKPGCWSDCFCVYSVKFLRWCVDKLFRERYIHRATMLKTIAPAPSLAGAFVA 151

Query: 169 HLK-----SLRKFQHSGGW---IKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGV 220
           +LK     ++     SGG+   ++ L+ ++E+   H+  ++ + +    ER   + + G+
Sbjct: 152 NLKMFLWKNVTYVPSSGGFAAEVRVLMAQSESHASHINILLSMCEITLVERAAAVLLFGM 211

Query: 221 FFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRL 278
            F  F +L+L+ P++A R++GYL EE++  +T  + DI+ G +   P PA AI YW L
Sbjct: 212 HFFIFTLLFLIQPRMAFRLLGYLNEESVVIWTHMINDIELGKVVERPVPAAAIQYWGL 269


>gi|126668998|ref|ZP_01739936.1| alternative oxidase [Marinobacter sp. ELB17]
 gi|126626547|gb|EAZ97206.1| alternative oxidase [Marinobacter sp. ELB17]
          Length = 72

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 46/68 (67%), Positives = 56/68 (82%)

Query: 240 VGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHR 299
           +GY EE A++SY EYL ++DSG +ENVPAP IAIDYW+LP DATL+DVI V+R DEA HR
Sbjct: 1   MGYFEEAAVYSYGEYLAEVDSGRLENVPAPQIAIDYWKLPADATLRDVIIVVRMDEAGHR 60

Query: 300 DVNHFASD 307
           DVNH  +D
Sbjct: 61  DVNHRFAD 68


>gi|407849450|gb|EKG04187.1| GTPase activating protein of Rab-like GTPase, putative [Trypanosoma
           cruzi]
          Length = 366

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 65/195 (33%), Positives = 98/195 (50%), Gaps = 10/195 (5%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRK 175
           H  P  F D      VKLLR   D  F+ RY  RA ML+ +A  P + G M+ HL+ + K
Sbjct: 111 HSPPQRFSDHCCIYLVKLLRWCADKLFRERYLHRATMLKVIAPAPPLAGAMISHLRMILK 170

Query: 176 FQH------SGGW---IKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFF 226
            ++       G +    + LL +AE+   H+  ++ + +  + ER+  + +Q   F  F 
Sbjct: 171 KENPAYIPGKGDFATETRGLLAQAESHASHIRILMLMTEITYVERIAAVFLQATHFAIFA 230

Query: 227 VLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPK-DATLK 285
            L+LLSP++A R++GYL EE++  +T  + DID G +     P  AI+YW L K   T  
Sbjct: 231 FLFLLSPRVAFRLMGYLGEESVVIWTHMINDIDLGKVTERALPQDAIEYWGLHKLKYTRA 290

Query: 286 DVITVIRADEAHHRD 300
               V R D   H D
Sbjct: 291 SAADVKRFDVREHCD 305


>gi|167405745|gb|ABZ79700.1| alternative oxidase [Solanum lycopersicum]
          Length = 163

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/113 (45%), Positives = 63/113 (55%), Gaps = 18/113 (15%)

Query: 45  LRMMVMMSSYSSSSESVPEKVKEK------------------GENGIVPSSYWGISRPKI 86
           +R    M S S+S+ ++ +K +EK                  G  G    SYWG+   K 
Sbjct: 51  VRHFSAMGSRSASTAALNDKQQEKESSDKKVENTATATAAVNGGVGKSVVSYWGVPPSKA 110

Query: 87  TREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTD 139
           T+ DG+ W WNCF PW  Y AD+SIDL KHH P TFLDK AY TVK+LR PTD
Sbjct: 111 TKPDGTEWKWNCFRPWHPYEADMSIDLTKHHAPVTFLDKFAYWTVKILRFPTD 163


>gi|117662855|gb|ABK55726.1| mitochondrial alternative oxidase [Cucumis sativus]
          Length = 55

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/55 (78%), Positives = 51/55 (92%)

Query: 180 GGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPK 234
           GG ++ LLEEAENERMHLMTM+ELV+PKW+ER+LV+TVQGVFFNAFFVLYL  P+
Sbjct: 1   GGGLRPLLEEAENERMHLMTMIELVQPKWHERLLVITVQGVFFNAFFVLYLTVPQ 55


>gi|218196955|gb|EEC79382.1| hypothetical protein OsI_20294 [Oryza sativa Indica Group]
          Length = 128

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/139 (43%), Positives = 71/139 (51%), Gaps = 19/139 (13%)

Query: 195 MHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEY 254
           MHLMT +E+ KP+WYER LVL VQ VFFNA+F+ YLLSPKLAHRVVGYLEEEA       
Sbjct: 1   MHLMTFMEVAKPRWYERTLVLAVQRVFFNAYFLGYLLSPKLAHRVVGYLEEEA------- 53

Query: 255 LKDIDSGSIENVPAPAIAIDYWRL--------PKDATLKDVITVIRADEAHHRDVNHFAS 306
                S S    PA +      R         P   +     +                 
Sbjct: 54  ----PSTSRTTRPARSRTSLRRRSPSTTGGSPPAPRSRTSSSSSTPTRRTTATSTISHRY 109

Query: 307 DIQFQGKELRDAPAPLGYH 325
           D+ FQG +L+D PAPL YH
Sbjct: 110 DVHFQGMDLKDTPAPLDYH 128


>gi|340057567|emb|CCC51913.1| conserved hypothetical protein, fragment, partial [Trypanosoma
           vivax Y486]
          Length = 324

 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 87/173 (50%), Gaps = 9/173 (5%)

Query: 115 KHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLR 174
            H  P  F D      VKLLR   D  F+ RY  RA ML+ +A  P + G  + +LK   
Sbjct: 117 SHCKPNCFNDYCCIYMVKLLRWCADKLFRERYIHRATMLKVIAPAPSLAGAFVANLKLFL 176

Query: 175 K------FQHSGGW---IKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAF 225
           K       Q   G+   ++ L+ +AE+   H   ++++    + ER++ L + G  F+ F
Sbjct: 177 KKGDASYLQGGPGFASEVRVLMAQAESHASHTHILMQVANITYVERVVALFLFGAHFSIF 236

Query: 226 FVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRL 278
             L++  P++A R++GYL EE++  +T  + DI  G I +   P  A DYW L
Sbjct: 237 SFLFVFCPRMAFRLMGYLGEESVVIWTHMINDIVLGKIGDRAIPRAAFDYWSL 289


>gi|71748286|ref|XP_823198.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
           GUTat10.1]
 gi|70832866|gb|EAN78370.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 351

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 95/183 (51%), Gaps = 9/183 (4%)

Query: 107 ADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGM 166
           A L  +   HH P  + D      VKLLR   D  F+ RY  RA ML+ +A  P M G +
Sbjct: 79  AALERETLNHHEPNCWNDYCCVSLVKLLRWCADKLFRERYIHRATMLKAIAPAPAMAGAI 138

Query: 167 LLHLKS-LRK-----FQHSGGW---IKALLEEAENERMHLMTMVELVKPKWYERMLVLTV 217
           + +L+  LRK         G +   ++ L+ + E+   H+  ++ + +    ER+  + +
Sbjct: 139 VANLRMYLRKKDATYLPSDGNFSSEVRVLMAQMESHAAHVNILLSMCEITTVERVAAVLL 198

Query: 218 QGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWR 277
            G+ +  F +L+LL P++A R++GYL EE++  +T  + D++ G I   P P  A+ YW 
Sbjct: 199 YGLHYFIFTLLFLLYPRMAFRLMGYLNEESVVIWTHMINDVELGKIVERPIPRAALQYWG 258

Query: 278 LPK 280
           L +
Sbjct: 259 LHR 261


>gi|384247842|gb|EIE21327.1| hypothetical protein COCSUDRAFT_48069 [Coccomyxa subellipsoidea
           C-169]
          Length = 680

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/182 (32%), Positives = 98/182 (53%), Gaps = 8/182 (4%)

Query: 133 LLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAEN 192
           L RIP D  + RR     ++LE ++ VPG V  ++ H+++L   +  G ++++   E+ N
Sbjct: 351 LFRIPRDTVWFRR----VLLLECLSPVPGTVASIVAHVRALATLRGPGSFVESYQRESGN 406

Query: 193 ERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYT 252
              HL+T+++L +P    R LVL  Q  F   +   Y ++P+  H  V +L      + +
Sbjct: 407 AHAHLLTLLQL-RPSLSLRALVLLSQAAFALPYAAAYAVAPRACHAFVCHLSGLTGEAIS 465

Query: 253 EYLKDIDSGSI---ENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQ 309
             L+D+DSGSI   + +PAP  A  YW LP+ AT++ V+ V+RAD      +N  A    
Sbjct: 466 GALRDLDSGSIPSWQRLPAPESAAAYWGLPEGATMRTVLLVVRADMVARSAINQDADPAT 525

Query: 310 FQ 311
           FQ
Sbjct: 526 FQ 527


>gi|261333103|emb|CBH16098.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 351

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 93/183 (50%), Gaps = 9/183 (4%)

Query: 107 ADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGM 166
           A L  +   HH P  + D      VKLLR   D  F+ RY  RA ML+ +A  P M G +
Sbjct: 79  AALERETLNHHEPNCWNDYCCVSLVKLLRWCADKLFRERYIHRATMLKAIAPAPAMAGAI 138

Query: 167 LLHLKS-LRKFQHS--------GGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTV 217
           + +L+  LRK   +           ++ L+ + E+   H+  ++ + +    ER+  + +
Sbjct: 139 VANLRMYLRKKDATYLPSHGNFSSEVRVLMAQMESHAAHVNILLSMCEITTVERVAAVLL 198

Query: 218 QGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWR 277
            G+ +  F +L+ L P++A R++GYL EE++  +T  + D++ G I   P P  A+ YW 
Sbjct: 199 YGLHYFIFTLLFFLYPRMAFRLMGYLNEESVVIWTHMINDVELGKIVERPIPRAALQYWG 258

Query: 278 LPK 280
           L +
Sbjct: 259 LHR 261


>gi|380474941|emb|CCF45511.1| alternative oxidase, partial [Colletotrichum higginsianum]
          Length = 241

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 76/136 (55%), Gaps = 24/136 (17%)

Query: 116 HHVPTTFLDKVAYRTVKLLRIPTDL------------------------FFQRRYGCRAM 151
           H  P +F D  A++ V+L R   D                           + ++  R +
Sbjct: 105 HREPRSFGDWAAWKFVRLARWCMDRATGLGKDQQVDKKNMTTSLVADKPLTEAQWLVRFI 164

Query: 152 MLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYER 211
            LE++A VPGMV GML HL SLR+ +   GWI++LLEE+ NERMHL+T +++ +P W+ +
Sbjct: 165 FLESIAGVPGMVAGMLRHLGSLRRMKRDNGWIESLLEESFNERMHLLTFMKMSEPGWFMK 224

Query: 212 MLVLTVQGVFFNAFFV 227
           +++L  QGVF++  +V
Sbjct: 225 LMILGAQGVFYSGRWV 240


>gi|340057356|emb|CCC51701.1| putative alternative oxidase [Trypanosoma vivax Y486]
          Length = 213

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 48/94 (51%), Positives = 58/94 (61%), Gaps = 8/94 (8%)

Query: 122 FLDKVAYRTVKLLRIPTDLFFQRRYGC--------RAMMLETVAAVPGMVGGMLLHLKSL 173
            +D +AYR V+  R   D F   R+G         R + LETVA VPGMVGGML HL SL
Sbjct: 84  IVDTLAYRLVRTCRWAFDTFSLYRFGSLTEQKVINRCLFLETVAGVPGMVGGMLRHLTSL 143

Query: 174 RKFQHSGGWIKALLEEAENERMHLMTMVELVKPK 207
           R+ +   GWI  LL EAENERMHLMT +EL + +
Sbjct: 144 RQMRRDKGWINTLLVEAENERMHLMTFIELRQAR 177


>gi|37520170|ref|NP_923547.1| oxidase [Gloeobacter violaceus PCC 7421]
 gi|35211163|dbj|BAC88542.1| oxidase [Gloeobacter violaceus PCC 7421]
          Length = 238

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/188 (32%), Positives = 88/188 (46%), Gaps = 21/188 (11%)

Query: 131 VKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEA 190
           V +L    D+ ++ R   R  +LETVA VP      +LHL           W+K    E 
Sbjct: 6   VSILVFVIDVLYKNRPYPRFYVLETVARVPYFSYLSVLHLYETLGLWRKSDWLKVHFAET 65

Query: 191 ENERMHLMTMVELV-KPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIH 249
            NE  HL+ M  L    +WY+R+L  +   V++    VLY++SP+ A+  +  +EE A H
Sbjct: 66  WNELHHLLIMESLGGNDRWYDRLLAKSSALVYYWVIVVLYMISPRSAYEFMRQVEEHAFH 125

Query: 250 SYTEYLKDIDSGSIENVPAPAIAIDYW-------------------RLPKDATLKDVITV 290
           +Y E+LK  D   ++  PAP +A+ Y+                   R P   TL DV   
Sbjct: 126 TYDEFLKS-DGERLKLQPAPVVAVSYYLTGDLYMFDEFQTSRRPEERRPACDTLYDVFVN 184

Query: 291 IRADEAHH 298
           IR DEA H
Sbjct: 185 IRDDEAEH 192


>gi|348681992|gb|EGZ21808.1| hypothetical protein PHYSODRAFT_354419 [Phytophthora sojae]
          Length = 212

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/119 (41%), Positives = 67/119 (56%), Gaps = 11/119 (9%)

Query: 96  WNCFMPWETYRADLSIDLKKHHVPTTFL-DKVAYRTVKLLRI----------PTDLFFQR 144
           W+  +    Y  D   D+++ H P   + ++VAY  VK LR           P     ++
Sbjct: 92  WDNPINHAVYDLDKISDMQQTHHPIVKMHERVAYMAVKALRTGFDVISGYRGPGGAMTEK 151

Query: 145 RYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVEL 203
            +  R + LE+VA VPGMVGGML HL+SLR+ +   GWI  LLEEAENERMHL+  + L
Sbjct: 152 DWLNRCLFLESVAGVPGMVGGMLRHLRSLRRMKRDYGWIHTLLEEAENERMHLLIFMNL 210


>gi|293338880|gb|ADE43747.1| alternative oxidase [Glugea plecoglossi]
          Length = 77

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/77 (48%), Positives = 57/77 (74%), Gaps = 1/77 (1%)

Query: 162 MVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVF 221
           ++GG+  HL SLR  + +   IK LL EAENER HL+T +E++KP  ++++ +  +Q VF
Sbjct: 1   LIGGLFNHLYSLRNLKQNHN-IKKLLMEAENERQHLLTFLEVMKPNLFDQIAIKMIQVVF 59

Query: 222 FNAFFVLYLLSPKLAHR 238
           FN++F+ YLL+PK+AHR
Sbjct: 60  FNSYFIFYLLAPKVAHR 76


>gi|397630745|gb|EJK69895.1| hypothetical protein THAOC_08808 [Thalassiosira oceanica]
          Length = 154

 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 60/106 (56%), Gaps = 9/106 (8%)

Query: 211 RMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVP--- 267
           R+ V+  Q  F   F   Y++SP   HR VGY+EEEA H+YT  +++I     E  P   
Sbjct: 9   RVAVVGSQFGFGCFFLTAYIISPAWCHRFVGYIEEEACHTYTRIVEEIQKAP-EGTPLAE 67

Query: 268 -----APAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDI 308
                AP IA  YW L ++ T+ DV+  +RADEA HRDVNH  S +
Sbjct: 68  WRTQAAPKIAKGYWHLGEEGTVYDVMMAVRADEAEHRDVNHAVSGV 113


>gi|119713229|gb|ABL97296.1| possible alternative respiratory pathway oxidase, partial
           [uncultured marine bacterium HF10_05C07]
          Length = 62

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/57 (63%), Positives = 42/57 (73%)

Query: 251 YTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASD 307
           YTEYL +ID G IEN  AP IAI+YW L KDATL+DV+  +R DEA HRD NH  +D
Sbjct: 1   YTEYLDEIDKGQIENTQAPEIAINYWNLSKDATLRDVVIAVRNDEAGHRDKNHLIAD 57


>gi|428219613|ref|YP_007104078.1| plastoquinol oxidase immutans [Pseudanabaena sp. PCC 7367]
 gi|427991395|gb|AFY71650.1| plastoquinol oxidase immutans [Pseudanabaena sp. PCC 7367]
          Length = 243

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 90/188 (47%), Gaps = 21/188 (11%)

Query: 131 VKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEA 190
           V +L    ++ ++ R   R  +LETVA VP      +LHL     F     W+K    E+
Sbjct: 6   VSILVFVINVLYRDRPIPRFYVLETVARVPYFAYLSVLHLYETLGFWRRADWLKVHFAES 65

Query: 191 ENERMHLMTMVELV-KPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIH 249
            NE  HL+   EL      ++R+L  T   V++     +Y+++PK A+  +  +EE A H
Sbjct: 66  WNELHHLLIAEELGGNNNPFDRLLAKTAALVYYWIVVGIYVVNPKAAYHFMEMVEEHAYH 125

Query: 250 SYTEYLKDIDSGSIENVPAPAIAIDYW-------------------RLPKDATLKDVITV 290
           +Y EYLK+ +   +++ PAPAIA+ Y+                   R PK   L DV   
Sbjct: 126 TYDEYLKE-NEAELKSKPAPAIAVKYYRDGDLYLFDEFQTGQVANSRRPKVDNLYDVFVA 184

Query: 291 IRADEAHH 298
           IR DEA H
Sbjct: 185 IRDDEAEH 192


>gi|71564278|gb|AAZ38329.1| alternative oxidase [Metarhizium anisopliae]
          Length = 59

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/59 (55%), Positives = 47/59 (79%)

Query: 189 EAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEA 247
           EA NERMHL+T +++ +P W+ +++++  QGVFFNA F+ YLL P++ HR VGYLEEEA
Sbjct: 1   EAYNERMHLLTFMKMCEPGWFMKLMIIGAQGVFFNALFITYLLHPRIVHRFVGYLEEEA 59


>gi|168043241|ref|XP_001774094.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674640|gb|EDQ61146.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 240

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 21/180 (11%)

Query: 139 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLM 198
           D+F++ R   R  +LET+A VP      +LH+     +     +IK    E+ NE  HL+
Sbjct: 29  DIFYKNRDYARFYVLETIARVPYFAFVSVLHMYESFGWWRRSDYIKVHFAESWNELHHLL 88

Query: 199 TMVELV-KPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKD 257
           TM  L    +W +R L   +   ++    V+YLLSP++A+     +E+ A H+Y E++K 
Sbjct: 89  TMEALGGDERWVDRFLAQHIAVGYYFMTVVMYLLSPRMAYHFSECVEKHAFHTYDEFIK- 147

Query: 258 IDSGSIENVPAPAIAIDYW-------------------RLPKDATLKDVITVIRADEAHH 298
           +    ++ +PAP +A+ Y+                   R PK   L DV   IR DEA H
Sbjct: 148 LHGEELKKLPAPEVAVKYYTSGDLYLFDEFQTDRTPNTRRPKIDNLYDVFYNIREDEAEH 207


>gi|145520557|ref|XP_001446134.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124413611|emb|CAK78737.1| unnamed protein product [Paramecium tetraurelia]
          Length = 143

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/157 (36%), Positives = 85/157 (54%), Gaps = 29/157 (18%)

Query: 166 MLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAF 225
           M  HL+SLR+ +   GWI  LLEEAENER+HL+T +++ K      ++++   G F  ++
Sbjct: 1   MHRHLRSLRRMKIDQGWIHTLLEEAENERIHLLTFLKIKKT-----LIIIQNWGSF--SY 53

Query: 226 FVLYLLSPKLAHRVVGYLE--------EEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWR 277
            V+ + S  +   V+G L+           IH +T  L+  +  SIE          YW 
Sbjct: 54  LVIPISS--VLKSVIGLLDTWKMWQDGSPPIHQWT--LRKANHHSIE----------YWG 99

Query: 278 LPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKE 314
           L  DATL DV+  IR DE HH+D+NHF +D   Q K+
Sbjct: 100 LEDDATLFDVVKGIRKDEEHHKDINHFFADDYTQFKQ 136


>gi|350536613|ref|NP_001234511.1| plastid quinol oxidase [Solanum lycopersicum]
 gi|9937099|gb|AAG02286.1|AF177979_1 plastid terminal oxidase [Solanum lycopersicum]
 gi|9937101|gb|AAG02287.1|AF177980_1 plastid terminal oxidase [Solanum lycopersicum]
 gi|10505366|gb|AAG18449.1|AF302931_1 plastid quinol oxidase [Solanum lycopersicum]
 gi|10505368|gb|AAG18450.1|AF302932_1 plastid quinol oxidase [Solanum lycopersicum]
          Length = 366

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 22/189 (11%)

Query: 130 TVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEE 189
           T  +++I   L+  R Y  R  +LET+A VP      +LH+     +     ++K    E
Sbjct: 124 TDSVIKILDTLYHNRNYA-RFFVLETIARVPYFAFISVLHMYESFGWWRRADYMKVHFAE 182

Query: 190 AENERMHLMTMVELVKPK-WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAI 248
           + NE  HL+ M EL     W++R L   +   ++    ++Y LSP++A+     +E  A 
Sbjct: 183 SWNEMHHLLIMEELGGNAWWFDRFLAQHIAIFYYFMTVLMYALSPRMAYHFSECVESHAY 242

Query: 249 HSYTEYLKDIDSGSIENVPAPAIAIDYW-------------------RLPKDATLKDVIT 289
            +Y +++KD     ++N+PAP IA+DY+                   R PK   L DV  
Sbjct: 243 ETYDKFIKD-QGEELKNLPAPKIAVDYYTGGDLYLFDEFQTSREPNTRRPKIDNLYDVFM 301

Query: 290 VIRADEAHH 298
            IR DEA H
Sbjct: 302 NIRDDEAEH 310


>gi|222616184|gb|EEE52316.1| hypothetical protein OsJ_34333 [Oryza sativa Japonica Group]
          Length = 72

 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 42/65 (64%), Positives = 48/65 (73%), Gaps = 3/65 (4%)

Query: 151 MMLETVAAVPGMVGG---MLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPK 207
           MMLETVAAVP    G   MLLHL SLR  +HS GWI+ LLEEAENERMHLM  + + K +
Sbjct: 1   MMLETVAAVPATGDGGRHMLLHLCSLRDIKHSDGWIRVLLEEAENERMHLMAFMAVPKRR 60

Query: 208 WYERM 212
           WYER+
Sbjct: 61  WYERL 65


>gi|443311406|ref|ZP_21041035.1| Alternative oxidase [Synechocystis sp. PCC 7509]
 gi|442778603|gb|ELR88867.1| Alternative oxidase [Synechocystis sp. PCC 7509]
          Length = 247

 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 86/188 (45%), Gaps = 21/188 (11%)

Query: 131 VKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEA 190
           V +L    + F++ R   R  +LETVA VP      +LHL     +     WIK    E+
Sbjct: 6   VNILEALLNTFYRTRIYPRFYVLETVARVPYFAFTSVLHLYETMGWWRKADWIKVHFAES 65

Query: 191 ENERMHLMTMVELVKPK-WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIH 249
            NE  HL+    L   + W +R +  T   V++     +Y+LSP+ A+  +  +EE A H
Sbjct: 66  WNELHHLLIAESLGGNQYWIDRFVAHTGAFVYYWIVVFVYVLSPRHAYNFMQQVEEHAYH 125

Query: 250 SYTEYLKDIDSGSIENVPAPAIAIDYW-------------------RLPKDATLKDVITV 290
           +Y  ++K+     ++ +PAP IAI+Y+                   R PK   L DV   
Sbjct: 126 TYNAFIKE-HGDELKTLPAPQIAINYYQDGDLYLFDEFQTTRVPQERRPKIENLYDVFVA 184

Query: 291 IRADEAHH 298
           IR DE  H
Sbjct: 185 IREDELEH 192


>gi|168027826|ref|XP_001766430.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162682339|gb|EDQ68758.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 245

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 90/180 (50%), Gaps = 21/180 (11%)

Query: 139 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLM 198
           D+F++ R   R  +LET+A +P      +L++     +     ++K    E+ NE  HL+
Sbjct: 29  DVFYKNRDYARFYVLETIARIPYFAFVSVLNMYESFGWWRRADYLKVHFAESWNELHHLL 88

Query: 199 TMVELV-KPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKD 257
           TM  L    +W +R L   +   ++    V+YLLSP++A+     +++ A H+Y E++ +
Sbjct: 89  TMEALGGDERWVDRFLAQHIAVGYYFMTVVMYLLSPRMAYHFSECVKKHAFHTYDEFI-N 147

Query: 258 IDSGSIENVPAPAIAIDYW-------------------RLPKDATLKDVITVIRADEAHH 298
           +++  ++N+PAP +A+ Y+                   R PK   L DV   IR DEA H
Sbjct: 148 LNAEELKNLPAPEVAVKYYTSGDLYLFDEFQTACPPNTRQPKVENLYDVFCNIREDEAEH 207


>gi|338227624|gb|AEI91024.1| alternative oxidase [Beauveria bassiana]
          Length = 58

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 46/58 (79%)

Query: 189 EAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEE 246
           EA NERMHL+T +++ +P W+ +++++  QGVFFN  F++YL +PK+ HR VGYLEEE
Sbjct: 1   EAYNERMHLLTFMKMCEPGWFMKLMIIGAQGVFFNGMFLMYLANPKIVHRFVGYLEEE 58


>gi|118429715|gb|ABK91846.1| mitochondrial alternative oxidase [Cryptosporidium parvum]
          Length = 187

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/89 (49%), Positives = 53/89 (59%), Gaps = 7/89 (7%)

Query: 114 KKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYG------CRAMM-LETVAAVPGMVGGM 166
           K H  P  F DK++Y  V  LR   DL  + + G      CR ++ LETVA VPGMVG M
Sbjct: 99  KTHLCPNGFKDKMSYYLVIALRKSFDLLTRYKKGHNEYQWCRRIIFLETVAGVPGMVGAM 158

Query: 167 LLHLKSLRKFQHSGGWIKALLEEAENERM 195
           L H  SLRK +   GWI  LLEEAENE++
Sbjct: 159 LRHFSSLRKMKRDNGWIHTLLEEAENEKI 187


>gi|118429717|gb|ABK91847.1| mitochondrial alternative oxidase [Cryptosporidium suis]
          Length = 187

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/89 (49%), Positives = 53/89 (59%), Gaps = 7/89 (7%)

Query: 114 KKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYG------CRAMM-LETVAAVPGMVGGM 166
           K H  P  F DK++Y  V  LR   DL  + + G      CR ++ LETVA VPGMVG M
Sbjct: 99  KTHLCPNGFKDKMSYYLVIALRKSFDLLTRYKKGHNEYQWCRRIIFLETVAGVPGMVGAM 158

Query: 167 LLHLKSLRKFQHSGGWIKALLEEAENERM 195
           L H  SLRK +   GWI  LLEEAENE++
Sbjct: 159 LRHFSSLRKMKRDNGWIHTLLEEAENEKI 187


>gi|293338882|gb|ADE43748.1| alternative oxidase [Spraguea lophii]
          Length = 78

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 50/77 (64%)

Query: 162 MVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVF 221
           MVGG+  HL SLR    +   I+ LL+EAENER HL+T ++++KP  ++R ++   Q VF
Sbjct: 1   MVGGLFHHLYSLRNLVDNKERIQILLKEAENERQHLLTFLKIMKPNIFDRFVIKITQAVF 60

Query: 222 FNAFFVLYLLSPKLAHR 238
           FN + V Y L P+  HR
Sbjct: 61  FNTYMVFYFLFPRTCHR 77


>gi|427724949|ref|YP_007072226.1| plastoquinol oxidase immutans [Leptolyngbya sp. PCC 7376]
 gi|427356669|gb|AFY39392.1| plastoquinol oxidase immutans [Leptolyngbya sp. PCC 7376]
          Length = 235

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 87/188 (46%), Gaps = 21/188 (11%)

Query: 131 VKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEA 190
           V +L    +  +  R   R  +LETVA VP      +LHL     F     W+K    E+
Sbjct: 6   VSILVFVINKVYANRPYPRFYVLETVARVPYFSYLSVLHLYETLGFWRKADWLKIHFAES 65

Query: 191 ENERMHLMTMVELVKPK-WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIH 249
            NE  HL+ M  L     W +R L  TV   ++     +Y++SP+ A+R +  +EE A  
Sbjct: 66  WNELHHLLIMESLGGSNFWLDRALAKTVALAYYWIIVGIYIVSPRSAYRFMELVEEHAYA 125

Query: 250 SYTEYLKDIDSGSIENVPAPAIAIDYW-------------------RLPKDATLKDVITV 290
           +Y ++LK  ++ +++  PAPAIAI+Y+                   R PK   L DV   
Sbjct: 126 TYDKFLK-AEAETLKGQPAPAIAINYYRDGDLYLFDEFQTGQIPEHRRPKVDNLYDVFVA 184

Query: 291 IRADEAHH 298
           IR DE  H
Sbjct: 185 IRDDEQEH 192


>gi|1478345|gb|AAB36072.1| Aox2 [Glycine max]
          Length = 40

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/40 (90%), Positives = 39/40 (97%)

Query: 198 MTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAH 237
           MTMVELVKPKWYER+LVL VQGVFFNAFFVLY+LSPK+AH
Sbjct: 1   MTMVELVKPKWYERLLVLAVQGVFFNAFFVLYILSPKVAH 40


>gi|41058328|gb|AAR99156.1| mitochondrial alternative oxidase [Petunia x hybrida]
          Length = 42

 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 35/42 (83%), Positives = 40/42 (95%)

Query: 198 MTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRV 239
           MTMVELV+PKWYER+LVL VQGVFFN +FVLYL+SPKLAHR+
Sbjct: 1   MTMVELVQPKWYERLLVLAVQGVFFNLYFVLYLVSPKLAHRI 42


>gi|2832676|emb|CAA16776.1| putative protein [Arabidopsis thaliana]
 gi|7269072|emb|CAB79181.1| putative protein [Arabidopsis thaliana]
          Length = 335

 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 6/175 (3%)

Query: 128 YRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALL 187
           + T  +++I   L+  R Y  R  +LET+A VP      +LH+     +     ++K   
Sbjct: 111 FLTDSVIKILDTLYRDRTYA-RFFVLETIARVPYFAFMSVLHMYETFGWWRRADYLKVHF 169

Query: 188 EEAENERMHLMTMVELVKPK-WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEE 246
            E+ NE  HL+ M EL     W++R L   +   ++     LY+LSP++A+     +E  
Sbjct: 170 AESWNEMHHLLIMEELGGNSWWFDRFLAQHIATFYYFMTVFLYILSPRMAYHFSECVESH 229

Query: 247 AIHSYTEYLKDIDSGSIENVPAPAIAIDYWR---LPKDATLKDVITVIRADEAHH 298
           A  +Y ++LK      ++N+PAP IA+ Y+    L     L DV   IR DEA H
Sbjct: 230 AYETYDKFLK-ASGEELKNMPAPDIAVKYYTGGDLYLFENLYDVFVNIRDDEAEH 283


>gi|428307127|ref|YP_007143952.1| plastoquinol oxidase immutans [Crinalium epipsammum PCC 9333]
 gi|428248662|gb|AFZ14442.1| plastoquinol oxidase immutans [Crinalium epipsammum PCC 9333]
          Length = 240

 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 85/188 (45%), Gaps = 21/188 (11%)

Query: 131 VKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEA 190
           V +L    +  ++ R   R  +LETVA VP      +LHL     +     W+K    E+
Sbjct: 6   VDVLVFVINTLYRDRAYQRFYVLETVARVPYFSFLSVLHLYETLGWWRKADWLKVHFAES 65

Query: 191 ENERMHLMTMVELVKPK-WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIH 249
            NE  HL+ M  L   K W +R+   T   V++     LYL+SP+ A+  +  +EE A H
Sbjct: 66  WNELHHLLIMESLGGNKHWGDRLFAQTTALVYYWVVVALYLVSPRTAYNFMQLVEEHAHH 125

Query: 250 SYTEYLKDIDSGSIENVPAPAIAIDYW-------------------RLPKDATLKDVITV 290
           +Y  ++K+     ++  PAP +AI+Y+                   R P    L DV   
Sbjct: 126 TYETFVKE-HEAELKAAPAPLVAINYYRDGDLYLFDEFQTGVKPESRRPAVDNLYDVFVN 184

Query: 291 IRADEAHH 298
           IR DEA H
Sbjct: 185 IRDDEAEH 192


>gi|9937103|gb|AAG02288.1|AF177981_1 plastid terminal oxidase [Capsicum annuum]
          Length = 357

 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 87/191 (45%), Gaps = 22/191 (11%)

Query: 128 YRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALL 187
           + T  +++I   L+  R Y  R  +LET+A VP      +LHL     +     ++K   
Sbjct: 113 FLTDSVIKILDTLYHDRHYA-RFFVLETIARVPYFAFISVLHLYESFGWWRRADYLKVHF 171

Query: 188 EEAENERMHLMTMVELVKPK-WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEE 246
            E+ NE  HL+ M EL     W++R L   +   ++     +Y LSP++A+     +E  
Sbjct: 172 AESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVFYYFMTVSMYALSPRMAYHFSECVEHH 231

Query: 247 AIHSYTEYLKDIDSGSIENVPAPAIAIDYW-------------------RLPKDATLKDV 287
           A  +Y +++KD     ++ +PAP IA+ Y+                   R PK   L DV
Sbjct: 232 AYETYDKFIKD-QEAELKKLPAPKIAVSYYTGGDLYLFDEFQTSREPNTRRPKIDNLYDV 290

Query: 288 ITVIRADEAHH 298
              IR DEA H
Sbjct: 291 FMNIRDDEAEH 301


>gi|118429709|gb|ABK91843.1| mitochondrial alternative oxidase [Cryptosporidium baileyi]
 gi|118429713|gb|ABK91845.1| mitochondrial alternative oxidase [Cryptosporidium baileyi]
          Length = 187

 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 66/113 (58%), Gaps = 10/113 (8%)

Query: 90  DGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLF--FQRRYG 147
           +G  + +NC + W+    +++   K H  P  F DK++Y  V  LR   DL   +++R+ 
Sbjct: 78  EGKEYGFNCPI-WDL--EEVNNVQKTHFCPNGFKDKISYYLVIALRKSFDLLTRYKKRHN 134

Query: 148 ----CRAMM-LETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERM 195
               CR ++ LETVA VPGMVG ML H  SLRK +   G I  LLEEAENE++
Sbjct: 135 EYQWCRRIIFLETVAGVPGMVGAMLRHFSSLRKMKRDNGLIHTLLEEAENEKI 187


>gi|118429707|gb|ABK91842.1| mitochondrial alternative oxidase [Cryptosporidium meleagridis]
 gi|118429711|gb|ABK91844.1| mitochondrial alternative oxidase [Cryptosporidium baileyi]
          Length = 186

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/112 (41%), Positives = 65/112 (58%), Gaps = 10/112 (8%)

Query: 90  DGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLF--FQRRYG 147
           +G  + +NC + W+    +++   K H  P  F DK++Y  V  LR   DL   +++R+ 
Sbjct: 78  EGKEYGFNCPI-WDL--EEVNNVQKTHFCPNGFKDKISYYLVIALRKSFDLLTRYKKRHN 134

Query: 148 ----CRAMM-LETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENER 194
               CR ++ LETVA VPGMVG ML H  SLRK +   G I  LLEEAENE+
Sbjct: 135 EYQWCRRIIFLETVAGVPGMVGAMLRHFSSLRKMKRDNGLIHTLLEEAENEK 186


>gi|297799790|ref|XP_002867779.1| hypothetical protein ARALYDRAFT_492640 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297313615|gb|EFH44038.1| hypothetical protein ARALYDRAFT_492640 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 351

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 87/191 (45%), Gaps = 22/191 (11%)

Query: 128 YRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALL 187
           + T  +++I   L+  R Y  R  +LET+A VP      +LH+     +     ++K   
Sbjct: 111 FLTDSVIKILDTLYRDRTYA-RFFVLETIARVPYFAFMSVLHMYETFGWWRRADYLKVHF 169

Query: 188 EEAENERMHLMTMVELVKPK-WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEE 246
            E+ NE  HL+ M EL     W++R L   +   ++     LY+LSP++A+     +E  
Sbjct: 170 AESWNEMHHLLIMEELGGNSWWFDRFLAQHIATFYYFMTVFLYILSPRMAYHFSECVESH 229

Query: 247 AIHSYTEYLKDIDSGSIENVPAPAIAIDYW-------------------RLPKDATLKDV 287
           A  +Y ++LK      ++N+PAP IA+ Y+                   R P    L DV
Sbjct: 230 AYETYDKFLK-TSGEELKNMPAPDIAVKYYTGSDLYLFDEFQTSRAPNTRRPVIENLYDV 288

Query: 288 ITVIRADEAHH 298
              IR DEA H
Sbjct: 289 FVNIRDDEAEH 299


>gi|18415888|ref|NP_567658.1| alternative oxidase 4 [Arabidopsis thaliana]
 gi|85681033|sp|Q56X52.2|AOX4_ARATH RecName: Full=Ubiquinol oxidase 4, chloroplastic/chromoplastic;
           AltName: Full=Alternative oxidase 4; AltName:
           Full=Plastid terminal oxidase; AltName: Full=Protein
           IMMUTANS; Flags: Precursor
 gi|11692822|gb|AAG40014.1|AF324663_1 AT4g22260 [Arabidopsis thaliana]
 gi|11908102|gb|AAG41480.1|AF326898_1 unknown protein [Arabidopsis thaliana]
 gi|12642914|gb|AAK00399.1|AF339717_1 unknown protein [Arabidopsis thaliana]
 gi|4138855|gb|AAD03599.1| IMMUTANS [Arabidopsis thaliana]
 gi|15010796|gb|AAK74057.1| AT4g22260/T10I14_90 [Arabidopsis thaliana]
 gi|23308315|gb|AAN18127.1| At4g22260/T10I14_90 [Arabidopsis thaliana]
 gi|332659183|gb|AEE84583.1| alternative oxidase 4 [Arabidopsis thaliana]
          Length = 351

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 87/191 (45%), Gaps = 22/191 (11%)

Query: 128 YRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALL 187
           + T  +++I   L+  R Y  R  +LET+A VP      +LH+     +     ++K   
Sbjct: 111 FLTDSVIKILDTLYRDRTYA-RFFVLETIARVPYFAFMSVLHMYETFGWWRRADYLKVHF 169

Query: 188 EEAENERMHLMTMVELVKPK-WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEE 246
            E+ NE  HL+ M EL     W++R L   +   ++     LY+LSP++A+     +E  
Sbjct: 170 AESWNEMHHLLIMEELGGNSWWFDRFLAQHIATFYYFMTVFLYILSPRMAYHFSECVESH 229

Query: 247 AIHSYTEYLKDIDSGSIENVPAPAIAIDYW-------------------RLPKDATLKDV 287
           A  +Y ++LK      ++N+PAP IA+ Y+                   R P    L DV
Sbjct: 230 AYETYDKFLK-ASGEELKNMPAPDIAVKYYTGGDLYLFDEFQTSRTPNTRRPVIENLYDV 288

Query: 288 ITVIRADEAHH 298
              IR DEA H
Sbjct: 289 FVNIRDDEAEH 299


>gi|3929647|emb|CAA06190.1| Immutans protein [Arabidopsis thaliana]
          Length = 351

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 87/191 (45%), Gaps = 22/191 (11%)

Query: 128 YRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALL 187
           + T  +++I   L+  R Y  R  +LET+A VP      +LH+     +     ++K   
Sbjct: 111 FLTDSVIKILDTLYRDRTYA-RFFVLETIARVPYFAFMSVLHMYETFGWWRRADYLKVHF 169

Query: 188 EEAENERMHLMTMVELVKPK-WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEE 246
            E+ NE  HL+ M EL     W++R L   +   ++     LY+LSP++A+     +E  
Sbjct: 170 AESWNEMHHLLIMEELGGNSWWFDRFLAQHIATFYYFMTVFLYILSPRMAYHFSECVESH 229

Query: 247 AIHSYTEYLKDIDSGSIENVPAPAIAIDYW-------------------RLPKDATLKDV 287
           A  +Y ++LK      ++N+PAP IA+ Y+                   R P    L DV
Sbjct: 230 AYETYDKFLK-ASGEELKNMPAPDIAVKYYTGGDLYLFDEFQTSRTPNTRRPVIENLYDV 288

Query: 288 ITVIRADEAHH 298
              IR DEA H
Sbjct: 289 FVNIRDDEAEH 299


>gi|449455371|ref|XP_004145426.1| PREDICTED: ubiquinol oxidase 4, chloroplastic/chromoplastic-like
           [Cucumis sativus]
 gi|449525172|ref|XP_004169592.1| PREDICTED: ubiquinol oxidase 4, chloroplastic/chromoplastic-like
           [Cucumis sativus]
          Length = 355

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 21/180 (11%)

Query: 139 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLM 198
           D F+  R+  R  +LET+A VP      +LH+     +     ++K    E+ NE  HL+
Sbjct: 118 DAFYHDRHYARFFVLETIARVPYFAFVSVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 177

Query: 199 TMVELVKPK-WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKD 257
            M EL     W++R L   +   ++     +Y++SP++A+     +E  A  +Y ++LK 
Sbjct: 178 IMEELGGNDWWFDRFLAQHIAVAYYFMTVFMYMISPRMAYHFSECVESHAFSTYDKFLK- 236

Query: 258 IDSGSIENVPAPAIAIDYW-------------------RLPKDATLKDVITVIRADEAHH 298
            +   ++  PAP +A+ Y+                   R PK  +L DV   IR DEA H
Sbjct: 237 AEGEELKKQPAPEVAVKYYTEGDLYLFDEFQTSRAPKSRRPKIESLYDVFMNIRDDEAEH 296


>gi|397614777|gb|EJK63007.1| hypothetical protein THAOC_16363 [Thalassiosira oceanica]
          Length = 261

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 91/181 (50%), Gaps = 23/181 (12%)

Query: 139 DLFFQ--RRYGCRAMMLETVAAVPGMVGGMLLHL-KSLRKFQHSGGWIKALLEEAENERM 195
           D FF+   R   R   LET+A VP      +LHL ++L K++ +  ++K    E+ NE  
Sbjct: 57  DSFFEGEDRAYARFYALETIARVPYFSYLSVLHLYETLGKWRRAK-YLKLHFAESWNELH 115

Query: 196 HLMTMVELV-KPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEY 254
           HL+ M EL    ++ +R L   +   ++    +LY+L+P  A+ +   +EE A  +Y +Y
Sbjct: 116 HLLIMEELGGSERFLDRFLAQHIAFGYYAVVILLYVLNPVQAYNLNQDVEEHAFETYDKY 175

Query: 255 LKDIDSGSIENVPAPAIAIDYW-----------------RLPKDATLKDVITVIRADEAH 297
           LKD +   ++N+PAP  AIDY+                 R PK   L DV   IR DEA 
Sbjct: 176 LKD-NEEKLKNLPAPKAAIDYYVDGDMYMFDEFQTGCEFRRPKIENLYDVFVAIRDDEAA 234

Query: 298 H 298
           H
Sbjct: 235 H 235


>gi|356555706|ref|XP_003546171.1| PREDICTED: alternative oxidase 4, chloroplastic/chromoplastic-like
           [Glycine max]
          Length = 332

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 22/191 (11%)

Query: 128 YRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALL 187
           + T  +++I   L+  R Y  R  +LET+A VP      +LH+     +     ++K   
Sbjct: 91  FLTDSVIKILDTLYHDRHYA-RFFVLETIARVPYFAFMSVLHMYESFGWWRRADYLKVHF 149

Query: 188 EEAENERMHLMTMVELVKPK-WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEE 246
            E+ NE  HL+ M EL     W++R L   +   ++    ++Y +SP++A+     +E  
Sbjct: 150 AESWNEMHHLLIMEELGGNAWWFDRFLAQHIAIFYYIMTVLMYAVSPRMAYHFSECVESH 209

Query: 247 AIHSYTEYLKDIDSGSIENVPAPAIAIDYW-------------------RLPKDATLKDV 287
           A  +Y +++K +    ++ +PAP +A++Y+                   R PK   L DV
Sbjct: 210 AFETYDKFIK-VQGDELKKMPAPEVAVNYYTGDDLYLFDEFQTSRVPNSRRPKIENLYDV 268

Query: 288 ITVIRADEAHH 298
              IR DEA H
Sbjct: 269 FVNIRDDEAEH 279


>gi|363807489|ref|NP_001242139.1| uncharacterized protein LOC100813378 [Glycine max]
 gi|255635539|gb|ACU18120.1| unknown [Glycine max]
          Length = 332

 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 22/191 (11%)

Query: 128 YRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALL 187
           + T  +++I   L+  R Y  R  +LET+A VP      +LH+     +     ++K   
Sbjct: 91  FLTDSVIKILDTLYHDRHYA-RFFVLETIARVPYFAFMSVLHMYESFGWWRRADYLKVHF 149

Query: 188 EEAENERMHLMTMVELVKPK-WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEE 246
            E+ NE  HL+ M EL     W++R L   +   ++    ++Y +SP++A+     +E  
Sbjct: 150 AESWNEMHHLLIMEELGGNAWWFDRFLAQHIAIFYYIMTVLMYAVSPRMAYHFSECVESH 209

Query: 247 AIHSYTEYLKDIDSGSIENVPAPAIAIDYW-------------------RLPKDATLKDV 287
           A  +Y +++K +    ++ +PAP +A++Y+                   R PK   L DV
Sbjct: 210 AFETYDKFIK-VQGDELKKMPAPEVAVNYYTGDDLYLFDEFQTSRVPNSRRPKIENLYDV 268

Query: 288 ITVIRADEAHH 298
              IR DEA H
Sbjct: 269 FVNIRDDEAEH 279


>gi|224116034|ref|XP_002317190.1| predicted protein [Populus trichocarpa]
 gi|222860255|gb|EEE97802.1| predicted protein [Populus trichocarpa]
          Length = 358

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 88/191 (46%), Gaps = 22/191 (11%)

Query: 128 YRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALL 187
           + T  +++I   L+  R Y  R  +LET+A VP      +LH+     +     ++K   
Sbjct: 113 FLTDSVIKILDTLYHDRDYA-RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHF 171

Query: 188 EEAENERMHLMTMVELVKPK-WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEE 246
            E+ NE  HL+ M EL     W++R+L   +   ++    ++Y LSP++A+     +E  
Sbjct: 172 AESWNEMHHLLIMEELGGNSWWFDRLLAQVIATSYYFMTVLMYALSPRMAYHFSECVESH 231

Query: 247 AIHSYTEYLKDIDSGSIENVPAPAIAIDYW-------------------RLPKDATLKDV 287
           A  +Y +++K      ++ +PAP +A+ Y+                   R PK   L DV
Sbjct: 232 AFATYDKFIK-AQGDDLKKLPAPEVAVKYYTEGDLYLFDEFQTSRAPHSRRPKIENLYDV 290

Query: 288 ITVIRADEAHH 298
              +R DEA H
Sbjct: 291 FLNVRDDEAEH 301


>gi|116783028|gb|ABK22767.1| unknown [Picea sitchensis]
          Length = 347

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 21/180 (11%)

Query: 139 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLM 198
           D  +  R+  R  +LET+A VP      +LH+     +     ++K    E+ NE  HL+
Sbjct: 109 DALYSERHYARFYVLETIARVPYFAFVSVLHMYESFGWWRRTDYLKVHFAESWNELHHLL 168

Query: 199 TMVELV-KPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKD 257
            M  L    +W++R L   +   ++     +Y+LSP++A+     +E+ A  +Y E++K 
Sbjct: 169 IMEALGGNERWFDRFLAQHIAVFYYFMTASMYILSPRMAYHFSECVEKHAYSTYDEFIK- 227

Query: 258 IDSGSIENVPAPAIAIDYW-------------------RLPKDATLKDVITVIRADEAHH 298
           +    ++ +PAP +A+ Y+                   R PK   L DV   IR DEA H
Sbjct: 228 LQGEELKKLPAPDVAVKYYTQGDLYLFDEFQTDRTPCSRRPKVENLYDVFVNIRDDEAEH 287


>gi|357447777|ref|XP_003594164.1| Alternative oxidase [Medicago truncatula]
 gi|87240787|gb|ABD32645.1| Alternative oxidase [Medicago truncatula]
 gi|355483212|gb|AES64415.1| Alternative oxidase [Medicago truncatula]
          Length = 342

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 22/191 (11%)

Query: 128 YRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALL 187
           + T  +++I   L+  R Y  R  +LET+A VP      +LH+     +     ++K   
Sbjct: 99  FLTDSVIKILDALYRDRNYA-RFFVLETIARVPYFAFMSILHMYESFGWWRRADYLKVHF 157

Query: 188 EEAENERMHLMTMVELVKPK-WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEE 246
            E+ NE  HL+ M EL     W++R L   +   ++    ++YL+SP++A+     +E  
Sbjct: 158 AESWNEMHHLLIMEELGGNAWWFDRFLAQHIAIFYYFMTALMYLISPRMAYHFSECVESH 217

Query: 247 AIHSYTEYLKDIDSGSIENVPAPAIAIDYW-------------------RLPKDATLKDV 287
           A  +Y +++K+     ++ +PAP +A++Y+                   R P    L DV
Sbjct: 218 AFETYDKFIKE-QGEELKKMPAPEVAVNYYTGGDLYLFDEFQTSRVPNTRRPTIDNLYDV 276

Query: 288 ITVIRADEAHH 298
              IR DEA H
Sbjct: 277 FLNIRDDEAEH 287


>gi|388507484|gb|AFK41808.1| unknown [Medicago truncatula]
          Length = 342

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 22/191 (11%)

Query: 128 YRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALL 187
           + T  +++I   L+  R Y  R  +LET+A VP      +LH+     +     ++K   
Sbjct: 99  FLTDSVIKILDALYRDRNYA-RFFVLETIARVPYFAFMSILHMYESFGWWRRADYLKVHF 157

Query: 188 EEAENERMHLMTMVELVKPK-WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEE 246
            E+ NE  HL+ M EL     W++R L   +   ++    ++YL+SP++A+     +E  
Sbjct: 158 AESWNEMHHLLIMEELGGNAWWFDRFLAQHIAIFYYFMTALMYLISPRMAYHFSECVESH 217

Query: 247 AIHSYTEYLKDIDSGSIENVPAPAIAIDYW-------------------RLPKDATLKDV 287
           A  +Y +++K+     ++ +PAP +A++Y+                   R P    L DV
Sbjct: 218 AFETYDKFIKE-QGEELKKMPAPEVAVNYYTGGDLYLFDEFRTSRVPNTRRPTIDNLYDV 276

Query: 288 ITVIRADEAHH 298
              IR DEA H
Sbjct: 277 FLNIRDDEAEH 287


>gi|158339790|ref|YP_001520797.1| alternative oxidase, putative [Acaryochloris marina MBIC11017]
 gi|158310031|gb|ABW31647.1| alternative oxidase, putative [Acaryochloris marina MBIC11017]
          Length = 226

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 86/188 (45%), Gaps = 21/188 (11%)

Query: 131 VKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEA 190
           V +L    +  +  R   R  +LETVA VP      +LHL           W+K    E+
Sbjct: 6   VGILVFVINKIYANRPYPRFYVLETVARVPYFSYLSVLHLYETLGLWRKADWLKIHFAES 65

Query: 191 ENERMHLMTMVELVKPK-WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIH 249
            NE  HL+ M  L   + W +R L  T   +++    VLY++SP+ A+  +  +EE A  
Sbjct: 66  WNELHHLLIMESLGGAEFWGDRFLAKTTALIYYWVIAVLYVVSPRSAYHFMELVEEHAYA 125

Query: 250 SYTEYLKDIDSGSIENVPAPAIAIDYW-------------------RLPKDATLKDVITV 290
           SY ++L+  ++  ++ +PAP +AI Y+                   R P+  TL DV   
Sbjct: 126 SYDKFLQ-TEAEHLKTLPAPDVAIQYYRDGDLYMFDEFQTAHQAAERRPQVDTLYDVFVA 184

Query: 291 IRADEAHH 298
           IR DE  H
Sbjct: 185 IRDDEMEH 192


>gi|254441495|ref|ZP_05054988.1| hypothetical protein OA307_910 [Octadecabacter antarcticus 307]
 gi|198251573|gb|EDY75888.1| hypothetical protein OA307_910 [Octadecabacter antarcticus 307]
          Length = 71

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 42/57 (73%), Gaps = 1/57 (1%)

Query: 253 EYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNH-FASDI 308
           +YL+ ID+G +ENV AP IA  YW LP DA L+DV+ VIR DEA HRD NH FA+ I
Sbjct: 9   QYLEKIDAGKVENVLAPEIAKKYWNLPDDARLRDVVIVIREDEAGHRDKNHDFANKI 65


>gi|41058332|gb|AAR99158.1| mitochondrial alternative oxidase [Petunia x hybrida]
          Length = 42

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/42 (76%), Positives = 36/42 (85%)

Query: 198 MTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRV 239
           MT +E+ KPKWYER LV TVQGVFFNA+F  YLLSPKLAHR+
Sbjct: 1   MTFMEVAKPKWYERALVFTVQGVFFNAYFATYLLSPKLAHRI 42


>gi|158333679|ref|YP_001514851.1| alternative oxidase [Acaryochloris marina MBIC11017]
 gi|158303920|gb|ABW25537.1| alternative oxidase, putative [Acaryochloris marina MBIC11017]
          Length = 221

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 80/170 (47%), Gaps = 21/170 (12%)

Query: 149 RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPK- 207
           R  +LETVA VP      +LHL           W+K    E+ NE  HL+ M  L   + 
Sbjct: 19  RFYVLETVARVPYFSYLSVLHLYETLGLWRKADWLKIHFAESWNELHHLLIMESLGGAEF 78

Query: 208 WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVP 267
           W +R+L  T   +++     LY++SP+ A+  +  +EE A  SY ++L+  ++  ++ +P
Sbjct: 79  WGDRLLAKTTALIYYWVIAALYVVSPRSAYHFMELVEEHAYASYDKFLQS-EAEHLKTLP 137

Query: 268 APAIAIDYW-------------------RLPKDATLKDVITVIRADEAHH 298
           AP +AI Y+                   R P+  TL DV   IR DE  H
Sbjct: 138 APDVAIQYYQDGDLYMFDEFQTAHQAAERRPQVDTLYDVFVAIRDDEMEH 187


>gi|81296552|gb|ABB70513.1| plastid terminal oxidase [Coffea canephora]
          Length = 351

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 89/196 (45%), Gaps = 32/196 (16%)

Query: 128 YRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALL 187
           + T  +++I   L+  R Y  R  +LET+A VP      +LHL     ++  G W +A L
Sbjct: 121 FLTDSVIKILDTLYHDRHYA-RFFVLETIARVPYFAFMSVLHL-----YESFGWWRRADL 174

Query: 188 EEAE-----NERMHLMTMVELVKPKW-YERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVG 241
            E       NE  HL+ M EL    W ++R L   +   ++     +Y+LSP++A+    
Sbjct: 175 SEVHFAESWNEMHHLLIMEELGGNSWWFDRFLAQHIAVFYYFMTVFMYMLSPRMAYHFSE 234

Query: 242 YLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYW-------------------RLPKDA 282
            +E  A  +Y +++KD     ++ +PA  +A+ Y+                   R PK  
Sbjct: 235 CVESHAFETYDKFIKD-QGEQLKKLPASNVAVKYYTEGNLYLFDEFQTARPPTSRRPKIE 293

Query: 283 TLKDVITVIRADEAHH 298
            + DV   IR DEA H
Sbjct: 294 NMYDVFLNIRDDEAEH 309


>gi|359464162|ref|ZP_09252725.1| alternative oxidase, putative [Acaryochloris sp. CCMEE 5410]
          Length = 226

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 86/188 (45%), Gaps = 21/188 (11%)

Query: 131 VKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEA 190
           V +L    +  +  R   R  +LETVA VP      +LHL           W+K    E+
Sbjct: 6   VGILVFVINKIYANRPYPRFYVLETVARVPYFSYLSVLHLYETLGLWRKADWLKIHFAES 65

Query: 191 ENERMHLMTMVELVKPK-WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIH 249
            NE  HL+ M  L   + W +R+L  T   +++     LY++SP+ A+  +  +EE A  
Sbjct: 66  WNELHHLLIMESLGGAEFWGDRLLAKTTALIYYWVIAALYVVSPRSAYHFMELVEEHAYA 125

Query: 250 SYTEYLKDIDSGSIENVPAPAIAIDYW-------------------RLPKDATLKDVITV 290
           SY ++L+  ++  ++ +PAP IAI Y+                   R P+  TL DV   
Sbjct: 126 SYDKFLQ-AEAEHLKTLPAPDIAIQYYRDGDLYMFDEFQTAHQAAERRPQVDTLYDVFVA 184

Query: 291 IRADEAHH 298
           IR DE  H
Sbjct: 185 IRDDEMEH 192


>gi|255615497|ref|XP_002539678.1| hypothetical protein RCOM_1998260 [Ricinus communis]
 gi|223503608|gb|EEF22705.1| hypothetical protein RCOM_1998260 [Ricinus communis]
          Length = 65

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/61 (57%), Positives = 41/61 (67%)

Query: 110 SIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLH 169
           +IDL  HH P    D +A+  VK LR   D FF +RYG RA++LETVAAVPGMVG  L H
Sbjct: 5   AIDLSIHHKPAGVSDTIAFGFVKALRFCADTFFAKRYGHRAVVLETVAAVPGMVGATLNH 64

Query: 170 L 170
           L
Sbjct: 65  L 65


>gi|255554747|ref|XP_002518411.1| Alternative oxidase 4, chloroplast precursor, putative [Ricinus
           communis]
 gi|223542256|gb|EEF43798.1| Alternative oxidase 4, chloroplast precursor, putative [Ricinus
           communis]
          Length = 356

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 81/180 (45%), Gaps = 21/180 (11%)

Query: 139 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLM 198
           D F+  R   R  +LET+A VP      +LH+     +     ++K    E+ NE  HL+
Sbjct: 118 DAFYHDRDYARFFVLETIARVPYFAFMSVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 177

Query: 199 TMVELVKPK-WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKD 257
            M EL     W++R L   +  +++     +Y LSP++A+     +E  A  +Y +++K 
Sbjct: 178 IMEELGGNSWWFDRFLAQHIAIIYYIMTVFMYALSPRMAYHFSECVESHAYATYDKFIK- 236

Query: 258 IDSGSIENVPAPAIAIDYW-------------------RLPKDATLKDVITVIRADEAHH 298
                ++ +PAP +A+ Y+                   R PK   L DV   IR DEA H
Sbjct: 237 AQGEELKKLPAPEVAVKYYTEGDLYLFDEFQTSRAPHSRRPKIDNLYDVFLNIRDDEAEH 296


>gi|359459267|ref|ZP_09247830.1| alternative oxidase [Acaryochloris sp. CCMEE 5410]
          Length = 219

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 76/170 (44%), Gaps = 21/170 (12%)

Query: 149 RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELV-KPK 207
           R  +LETVA +P      +LH      F     W+K    E+ NE  HL+ M  L    K
Sbjct: 24  RFYVLETVARIPYFSYLSVLHFYETLGFWRRADWLKVHFAESWNELHHLLIMEALGGDKK 83

Query: 208 WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVP 267
           W +R L   V  +++     LY++SP+ A+  +  +E+EA  +Y  +L D  +  +++ P
Sbjct: 84  WIDRFLARHVALLYYWIVVALYVVSPRSAYHFMELVEQEAFQTYNSFLHD-HAEELKSQP 142

Query: 268 APAIAIDYW-------------------RLPKDATLKDVITVIRADEAHH 298
           AP IA+ Y+                   R P    L DV   IR DE  H
Sbjct: 143 APQIAVSYYRDGDLYMFDEFQSARVPEERRPAVDNLYDVFVNIRDDEMEH 192


>gi|226501174|ref|NP_001150780.1| immutans protein [Zea mays]
 gi|195641770|gb|ACG40353.1| immutans protein [Zea mays]
          Length = 343

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 79/174 (45%), Gaps = 21/174 (12%)

Query: 145 RYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELV 204
           RY  R   LET+A VP      +LHL +   +     +IK    ++ NE  HL+ M EL 
Sbjct: 122 RYYARFFALETIARVPYFAFISVLHLYATFGWWRRADYIKVHFAQSWNEFHHLLIMEELG 181

Query: 205 KPK-WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI 263
               W++  L   +   ++     +Y+LSP++A+     +E  A  +Y E+LK +    +
Sbjct: 182 GDSLWFDCFLARFMAFFYYFMTVAMYMLSPRMAYHFSECVERHAYSTYDEFLK-LHEEEL 240

Query: 264 ENVPAPAIAIDYW-------------------RLPKDATLKDVITVIRADEAHH 298
           + +PAP  A++Y+                   R PK   L DV   IR DEA H
Sbjct: 241 KRLPAPEAALNYYMNEDLYLFDEFQASRTPGSRRPKIDNLYDVFVNIREDEAEH 294


>gi|41058330|gb|AAR99157.1| mitochondrial alternative oxidase [Petunia x hybrida]
          Length = 42

 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/42 (73%), Positives = 36/42 (85%)

Query: 198 MTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRV 239
           MT +E+ KPKWYER LV TVQGVFFNA+F  YL+SPKLAHR+
Sbjct: 1   MTFMEVAKPKWYERALVFTVQGVFFNAYFATYLVSPKLAHRI 42


>gi|428184645|gb|EKX53500.1| plastid terminal oxidase [Guillardia theta CCMP2712]
          Length = 301

 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 102/235 (43%), Gaps = 33/235 (14%)

Query: 88  REDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYG 147
           R+DG+ W    + P  T      +D+            +A   V +L+   D ++ ++  
Sbjct: 66  RKDGTTWGSKSY-PVSTVEEPEPLDI--------VTKSIAQALVTVLKGSLDWYYHKKSD 116

Query: 148 -CRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKP 206
             R  +LETVA VP      +LHL     +     WIK    EA+NE  HL+ M  L   
Sbjct: 117 FARFFVLETVARVPYFAYMSVLHLYESFGYHDRAHWIKIHYAEADNELHHLLIMEALGGN 176

Query: 207 KWY-ERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIEN 265
           K + +R +       ++      Y L P+ A+ V+  +E  A H+Y++Y+ + +   + +
Sbjct: 177 KEFSDRWIAQHAAFAYYWFCVTFYFLHPRGAYYVMSLIENHAYHTYSKYI-EANKSWLAS 235

Query: 266 VPAPAIAIDYW--------------------RLPKDATLKDVITVIRADEA-HHR 299
            P+PAIA +Y+                    R P+  +L D    IR DE+ HHR
Sbjct: 236 QPSPAIAKEYYEGGDLYLFDAFHTTRAEEQERRPRVQSLLDTFESIRDDESQHHR 290


>gi|224031555|gb|ACN34853.1| unknown [Zea mays]
 gi|414584889|tpg|DAA35460.1| TPA: alternative oxidase [Zea mays]
          Length = 339

 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 79/174 (45%), Gaps = 21/174 (12%)

Query: 145 RYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELV 204
           RY  R   LET+A VP      +LHL +   +     +IK    ++ NE  HL+ M EL 
Sbjct: 118 RYYARFFALETIARVPYFAFISVLHLYATFGWWRRADYIKVHFAQSWNEFHHLLIMEELG 177

Query: 205 KPK-WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI 263
               W++  L   +   ++     +Y+LSP++A+     +E  A  +Y E+LK +    +
Sbjct: 178 GDSLWFDCFLARFMAFFYYFMTVAMYMLSPRMAYHFSECVERHAYSTYDEFLK-LHEEEL 236

Query: 264 ENVPAPAIAIDYW-------------------RLPKDATLKDVITVIRADEAHH 298
           + +PAP  A++Y+                   R PK   L DV   IR DEA H
Sbjct: 237 KRLPAPEAALNYYMNEDLYLFDEFQASRTPGSRRPKIDNLYDVFVNIREDEAEH 290


>gi|41058326|gb|AAR99155.1| mitochondrial alternative oxidase [Petunia x hybrida]
          Length = 42

 Score = 71.2 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/42 (71%), Positives = 36/42 (85%)

Query: 198 MTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRV 239
           MT +E+ KPKWYER LV+ VQGVFFNA+F  YL+SPKLAHR+
Sbjct: 1   MTFMEVAKPKWYERALVIAVQGVFFNAYFAAYLISPKLAHRI 42


>gi|158334717|ref|YP_001515889.1| alternative oxidase [Acaryochloris marina MBIC11017]
 gi|158304958|gb|ABW26575.1| alternative oxidase, putative [Acaryochloris marina MBIC11017]
          Length = 219

 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 75/170 (44%), Gaps = 21/170 (12%)

Query: 149 RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELV-KPK 207
           R  +LETVA +P      +LH      F     W+K    E+ NE  HL+ M  L    K
Sbjct: 24  RFYVLETVARIPYFSYLSVLHFYETLGFWRRADWLKVHFAESWNELHHLLIMEALGGDKK 83

Query: 208 WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVP 267
           W +R L   V  +++     LY++SP+ A+  +  +E+EA  +Y  +L D  +  ++  P
Sbjct: 84  WIDRFLARHVALLYYWIVVALYVVSPRSAYHFMELVEQEAFQTYNSFLHD-HAEELKGQP 142

Query: 268 APAIAIDYW-------------------RLPKDATLKDVITVIRADEAHH 298
           AP IA+ Y+                   R P    L DV   IR DE  H
Sbjct: 143 APQIAVSYYRDGDLYMFDEFQSARVPEERRPAVDNLYDVFVNIRDDEMEH 192


>gi|427419241|ref|ZP_18909424.1| Alternative oxidase [Leptolyngbya sp. PCC 7375]
 gi|425761954|gb|EKV02807.1| Alternative oxidase [Leptolyngbya sp. PCC 7375]
          Length = 219

 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 85/188 (45%), Gaps = 21/188 (11%)

Query: 131 VKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEA 190
           V +L    +  ++ R   R  +LETVA VP      +LHL     +     W+K    E+
Sbjct: 6   VGILVFVINTVYKNRPYPRFYVLETVARVPYFSYLSVLHLYETLGWWRKVDWLKVHFAES 65

Query: 191 ENERMHLMTMVEL-VKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIH 249
            NE  HL+ M EL    +W +R L   V  +++     +Y ++P+ A+  +  +EE A  
Sbjct: 66  WNELHHLLIMEELGGSQQWIDRFLARHVALLYYWIIVAIYAVNPRAAYHFMELVEEHAYA 125

Query: 250 SYTEYLKDIDSGSIENVPAPAIAIDYW-------------------RLPKDATLKDVITV 290
           SY ++L+  +  +++  PAP +AI Y+                   R P+   L DV   
Sbjct: 126 SYDKFLQS-NEAALKQEPAPQVAISYYRDGDLYMFDEFQTARPPTERRPQIKNLYDVFVA 184

Query: 291 IRADEAHH 298
           IR DE  H
Sbjct: 185 IRDDEMEH 192


>gi|428223604|ref|YP_007107701.1| plastoquinol oxidase immutans [Geitlerinema sp. PCC 7407]
 gi|427983505|gb|AFY64649.1| plastoquinol oxidase immutans [Geitlerinema sp. PCC 7407]
          Length = 233

 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 21/188 (11%)

Query: 131 VKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEA 190
           V +L    +  ++ R   R  +LETVA VP      +LHL           W+K    E+
Sbjct: 6   VGILVFVINTLYRDRPYPRFYVLETVARVPYFAYMSVLHLYESLGLWRKADWLKVHFAES 65

Query: 191 ENERMHLMTMVEL-VKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIH 249
            NE  HL+ M  L    +W +R +       ++    +LYL SP+ A+  +  +E+ A H
Sbjct: 66  WNELHHLLIMESLGGNDRWVDRFVARHAALAYYWLVVLLYLFSPRSAYHFMELVEQHAYH 125

Query: 250 SYTEYLKDIDSGSIENVPAPAIAIDYW-------------------RLPKDATLKDVITV 290
           +Y  +L++ +  +++  PAPA+A++Y+                   R P+   L DV   
Sbjct: 126 TYDVFLQE-NEAALKAEPAPAVAVNYYREGDLYMFDEFQTGSKPETRRPEIRHLYDVFVN 184

Query: 291 IRADEAHH 298
           IR DE  H
Sbjct: 185 IRDDEMEH 192


>gi|440684015|ref|YP_007158810.1| plastoquinol oxidase immutans [Anabaena cylindrica PCC 7122]
 gi|428681134|gb|AFZ59900.1| plastoquinol oxidase immutans [Anabaena cylindrica PCC 7122]
          Length = 228

 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 83/188 (44%), Gaps = 21/188 (11%)

Query: 131 VKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEA 190
           V +L    +  ++ R   R  +LETVA VP      +LHL     F     W+K    E+
Sbjct: 6   VGILVFVINTVYRDRPYPRFYVLETVARVPYFSYLSVLHLYETLGFWRKADWLKVHFAES 65

Query: 191 ENERMHLMTMVELVKPK-WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIH 249
            NE  HL+ M  L   + W +R+L  T   +++     LY++S   A+  +  +E  A  
Sbjct: 66  WNELHHLLIMESLGGSQFWGDRILARTTALIYYWIIVALYIVSSSSAYNFMELVENHAYD 125

Query: 250 SYTEYLKDIDSGSIENVPAPAIAIDYW-------------------RLPKDATLKDVITV 290
           SY ++L +     ++  PAPA+AI+Y+                   R PK   L DV   
Sbjct: 126 SYQKFLTE-HEAELKLQPAPAVAINYYRDGDLYMFDEFQTANSPETRRPKVDNLYDVFVA 184

Query: 291 IRADEAHH 298
           IR DE  H
Sbjct: 185 IRDDEMEH 192


>gi|83308257|emb|CAJ44430.1| alternative oxidase [Cocos nucifera]
          Length = 64

 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 28/52 (53%), Positives = 40/52 (76%)

Query: 77  SYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAY 128
           SYWG++  K+ +EDG+ W W CF PW++Y ++ SIDL KHHVP T+ +K+AY
Sbjct: 10  SYWGMAPAKVVKEDGTEWKWPCFKPWDSYTSNQSIDLHKHHVPMTWGEKLAY 61


>gi|41058334|gb|AAR99159.1| mitochondrial alternative oxidase [Petunia x hybrida]
          Length = 42

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/42 (71%), Positives = 34/42 (80%)

Query: 198 MTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRV 239
           MT +EL  PKWYER LV  VQGVFFNA+F+ YL SPKLAHR+
Sbjct: 1   MTFIELSNPKWYERALVFAVQGVFFNAYFLAYLASPKLAHRI 42


>gi|224118168|ref|XP_002331574.1| predicted protein [Populus trichocarpa]
 gi|222873798|gb|EEF10929.1| predicted protein [Populus trichocarpa]
          Length = 362

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 79/180 (43%), Gaps = 21/180 (11%)

Query: 139 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLM 198
           D  +  R   R  +LET+A VP      +LHL     +     +IK    E+ NE  HL+
Sbjct: 125 DALYHGRDYARFYVLETIARVPYFAFISVLHLYESFGWWRRSDYIKVHFAESWNEMHHLL 184

Query: 199 TMVEL-VKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKD 257
            M EL     W++R L   +   ++    ++Y LSP++A+     +E  A  +Y +++K 
Sbjct: 185 IMEELGGNSLWFDRFLAQHMAFFYYIMTVLMYALSPRMAYHFSECVENHAFETYDKFIK- 243

Query: 258 IDSGSIENVPAPAIAIDYW-------------------RLPKDATLKDVITVIRADEAHH 298
                +  +PAP +A+ Y+                   R PK   L DV   IR DEA H
Sbjct: 244 AQGEDLRKMPAPEVAVKYYTEGDLYLFDEFQTSRAPHSRRPKIENLYDVFLNIRDDEAEH 303


>gi|32307546|gb|AAP79178.1| quinol-to-oxygen oxidoreductase [Bigelowiella natans]
          Length = 291

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 89/212 (41%), Gaps = 36/212 (16%)

Query: 114 KKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSL 173
            +  +   F+ K  Y  + L+    D  F  R   R   LETVA +P +    +LHL   
Sbjct: 44  NRTQIEAPFVIKAPYIVLCLM---LDSLFDGRPLERFWFLETVARMPYLSYVTMLHL--- 97

Query: 174 RKFQHSGGWIKAL------LEEAENERMHLMTMVELVKPK-WYERMLVLTVQGVFFNAFF 226
             ++  G W +A         E  NE  HL+T   L   + W  R L      V++    
Sbjct: 98  --YESFGWWRRAAAVKRVHFAEEWNEFHHLLTFEALGGDRSWATRFLAQHAAIVYYWVLV 155

Query: 227 VLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYW---------- 276
           +++LLSP LA+     +E  A+ +Y E+  D +   ++ +PAP IAI YW          
Sbjct: 156 LMWLLSPTLAYNFSELIEAHAVDTYGEF-ADANEELMKELPAPGIAIQYWMGGDMYLYDE 214

Query: 277 ----------RLPKDATLKDVITVIRADEAHH 298
                     R P    L DVI  IR DEA H
Sbjct: 215 FQTERRLGDERRPNITNLYDVICAIRDDEAEH 246


>gi|255086799|ref|XP_002509366.1| predicted protein [Micromonas sp. RCC299]
 gi|226524644|gb|ACO70624.1| predicted protein [Micromonas sp. RCC299]
          Length = 214

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 85/198 (42%), Gaps = 26/198 (13%)

Query: 139 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLM 198
           D  ++ R   R   LETVA VP      +LHL     F     ++K    +  NE  HL+
Sbjct: 21  DKLYEGRSYARFYALETVARVPYFSFLSVLHLYETLGFWRRADYLKVHFAQTMNEFHHLL 80

Query: 199 TMVELVKPKWYERMLVLTVQGVFFNAFFV---LYLLSPKLAHRVVGYLEEEAIHSYTEYL 255
            M  +   K +          VF+  +F+   +YL+SP++A+ +   +EE A H+Y E+L
Sbjct: 81  IMESMGGDKRFTDRFFAQHMAVFY--YFIACAMYLVSPRMAYNLSEQVEEHAYHTYDEFL 138

Query: 256 KDIDSGSIENVPAPAIAIDYW-----------------RLPKDATLKDVITVIRADEAHH 298
           K+ +   +++ P P IA  Y+                 R P    L DV   +R DEA H
Sbjct: 139 KE-NELELKSKPPPPIATHYYTEGDLFLFDEFQTGAARRRPSIDNLYDVFVNVRNDEAEH 197

Query: 299 RDVNHFASDIQFQGKELR 316
                F    Q  G  LR
Sbjct: 198 MKTMQFC---QLPGAILR 212


>gi|1478343|gb|AAC34192.1| alternative oxidase Aox1 precursor [Glycine max]
          Length = 40

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/40 (75%), Positives = 35/40 (87%)

Query: 198 MTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAH 237
           MT +E+ KPKWYER LV+TVQGVFFNA+F+ YLLSPK AH
Sbjct: 1   MTFMEVAKPKWYERALVITVQGVFFNAYFLGYLLSPKFAH 40


>gi|1478347|gb|AAB36073.1| Aox3 [Glycine max]
          Length = 40

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/37 (83%), Positives = 34/37 (91%)

Query: 198 MTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPK 234
           MTMVELVKP W+ER+L+LT QGVFFNAFFV YLLSPK
Sbjct: 1   MTMVELVKPSWHERLLILTAQGVFFNAFFVFYLLSPK 37


>gi|297745709|emb|CBI41031.3| unnamed protein product [Vitis vinifera]
          Length = 294

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 82/167 (49%), Gaps = 4/167 (2%)

Query: 128 YRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALL 187
           + T  +++I   L+  R Y  R  +LET+A VP      +LH+     +     ++K   
Sbjct: 110 FLTESVIKILDTLYHDRDYA-RFFVLETIARVPYFAFMSVLHMYESFGWWRRADYLKVHF 168

Query: 188 EEAENERMHLMTMVELVKPK-WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEE 246
            E+ NE  HL+ M EL     W++R L   +   ++     +Y+LSP++A+ +   +E  
Sbjct: 169 AESWNEMHHLLIMEELGGNAWWFDRFLAQHIAIFYYFMTVFMYVLSPRMAYHLSECVESH 228

Query: 247 AIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRA 293
           A  +Y +++K      ++N+PAP IA+ Y+    D  L D     RA
Sbjct: 229 AYETYDKFIKS-QGDELKNLPAPEIAVRYY-TEGDLYLFDEFQTARA 273


>gi|359496713|ref|XP_002271078.2| PREDICTED: alternative oxidase 4, chloroplastic/chromoplastic-like,
           partial [Vitis vinifera]
          Length = 281

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 82/167 (49%), Gaps = 4/167 (2%)

Query: 128 YRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALL 187
           + T  +++I   L+  R Y  R  +LET+A VP      +LH+     +     ++K   
Sbjct: 110 FLTESVIKILDTLYHDRDYA-RFFVLETIARVPYFAFMSVLHMYESFGWWRRADYLKVHF 168

Query: 188 EEAENERMHLMTMVELVKPK-WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEE 246
            E+ NE  HL+ M EL     W++R L   +   ++     +Y+LSP++A+ +   +E  
Sbjct: 169 AESWNEMHHLLIMEELGGNAWWFDRFLAQHIAIFYYFMTVFMYVLSPRMAYHLSECVESH 228

Query: 247 AIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRA 293
           A  +Y +++K      ++N+PAP IA+ Y+    D  L D     RA
Sbjct: 229 AYETYDKFIKS-QGDELKNLPAPEIAVRYY-TEGDLYLFDEFQTARA 273


>gi|357166646|ref|XP_003580780.1| PREDICTED: alternative oxidase 4, chloroplastic/chromoplastic-like
           [Brachypodium distachyon]
          Length = 368

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 86/191 (45%), Gaps = 22/191 (11%)

Query: 128 YRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALL 187
           + T  ++ I   L+  R Y  R  +LET+A VP      +LH+     +     +IK   
Sbjct: 128 FLTDSIITILDGLYGDRNYA-RFFVLETIARVPYFAFISVLHMYETFGWWRRADYIKVHF 186

Query: 188 EEAENERMHLMTMVEL-VKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEE 246
            E+ NE  HL+ M EL    +  +R L       ++     +Y+LSP++A+     +E  
Sbjct: 187 AESMNEFHHLLIMEELGGNSELVDRFLARFSAFFYYFMTVAMYMLSPRMAYHFSECVERH 246

Query: 247 AIHSYTEYLKDIDSGSIENVPAPAIAIDYW-------------------RLPKDATLKDV 287
           A  +Y ++LK ++   ++ +PAP  AI+Y+                   R PK   L DV
Sbjct: 247 AYSTYDKFLK-LNGEELKKLPAPEAAINYYMNEDLYLFDEFQTSRVPCSRRPKVDNLYDV 305

Query: 288 ITVIRADEAHH 298
              IR DEA H
Sbjct: 306 FVNIRDDEAEH 316


>gi|90399151|emb|CAJ86080.1| H0818H01.2 [Oryza sativa Indica Group]
 gi|90399243|emb|CAJ86199.1| B0811B10.18 [Oryza sativa Indica Group]
          Length = 320

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 85/176 (48%), Gaps = 8/176 (4%)

Query: 128 YRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALL 187
           + T  ++ I   L+  R Y  R  +LET+A VP      +LH+     +     +IK   
Sbjct: 97  FLTESVITILDGLYRDRNYA-RFFVLETIARVPYFAFISVLHMYETFGWWRRADYIKVHF 155

Query: 188 EEAENERMHLMTMVEL-VKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEE 246
            E+ NE  HL+ M EL     W +R L       ++     +Y++SP++A+     +E  
Sbjct: 156 AESWNEFHHLLIMEELGGNSLWVDRFLARFAAFFYYFMTVAMYMVSPRMAYHFSECVERH 215

Query: 247 AIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDA----TLKDVITVIRADEAHH 298
           A  +Y +++K +    ++ +PAP  A++Y+ L +D      L DV   IR DEA H
Sbjct: 216 AYSTYDKFIK-LHEDELKKLPAPEAALNYY-LNEDLYLFDNLYDVFVNIRDDEAEH 269


>gi|115461198|ref|NP_001054199.1| Os04g0668900 [Oryza sativa Japonica Group]
 gi|21105122|gb|AAC35554.3| oxidase [Oryza sativa Japonica Group]
 gi|32488386|emb|CAE02811.1| OSJNBa0043A12.16 [Oryza sativa Japonica Group]
 gi|113565770|dbj|BAF16113.1| Os04g0668900 [Oryza sativa Japonica Group]
 gi|215695465|dbj|BAG90652.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218195789|gb|EEC78216.1| hypothetical protein OsI_17850 [Oryza sativa Indica Group]
 gi|222629739|gb|EEE61871.1| hypothetical protein OsJ_16557 [Oryza sativa Japonica Group]
          Length = 336

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 85/191 (44%), Gaps = 22/191 (11%)

Query: 128 YRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALL 187
           + T  ++ I   L+  R Y  R  +LET+A VP      +LH+     +     +IK   
Sbjct: 97  FLTESVITILDGLYRDRNYA-RFFVLETIARVPYFAFISVLHMYETFGWWRRADYIKVHF 155

Query: 188 EEAENERMHLMTMVEL-VKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEE 246
            E+ NE  HL+ M EL     W +R L       ++     +Y++SP++A+     +E  
Sbjct: 156 AESWNEFHHLLIMEELGGNSLWVDRFLARFAAFFYYFMTVAMYMVSPRMAYHFSECVERH 215

Query: 247 AIHSYTEYLKDIDSGSIENVPAPAIAIDYW-------------------RLPKDATLKDV 287
           A  +Y +++K +    ++ +PAP  A++Y+                   R PK   L DV
Sbjct: 216 AYSTYDKFIK-LHEDELKKLPAPEAALNYYLNEDLYLFDEFQTARVPCSRRPKIDNLYDV 274

Query: 288 ITVIRADEAHH 298
              IR DEA H
Sbjct: 275 FVNIRDDEAEH 285


>gi|428319159|ref|YP_007117041.1| alternative oxidase [Oscillatoria nigro-viridis PCC 7112]
 gi|428242839|gb|AFZ08625.1| alternative oxidase [Oscillatoria nigro-viridis PCC 7112]
          Length = 229

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 80/188 (42%), Gaps = 21/188 (11%)

Query: 131 VKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEA 190
           V       D+ +  R   R  MLET+A VP      +LHL     +      +K    E 
Sbjct: 9   VAFFVFLVDVVYGNRSYPRFYMLETIARVPYFSYLSVLHLYETLGYWRKADLLKLHFAET 68

Query: 191 ENERMHLMTMVELVKPK-WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIH 249
            NE  HL+ M  L   + W +R +   V   ++     LY+L P  A+ ++  +E  A H
Sbjct: 69  WNELHHLLIMESLGGDRLWIDRFIAQHVAFAYYWVVVPLYMLFPSYAYYLMELIEGHAYH 128

Query: 250 SYTEYLKDIDSGSIENVPAPAIAIDYW-------------------RLPKDATLKDVITV 290
           +Y EYLK  ++  ++  PAP +AI+++                   R PK   L DV   
Sbjct: 129 TYDEYLKTYEA-QLKAQPAPQVAINFYRDGDLYMFDEVQTALSHEFRRPKVDNLYDVFAN 187

Query: 291 IRADEAHH 298
           IR DE  H
Sbjct: 188 IRDDEDEH 195


>gi|359359155|gb|AEV41060.1| putative immutans protein [Oryza minuta]
          Length = 346

 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 85/191 (44%), Gaps = 22/191 (11%)

Query: 128 YRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALL 187
           + T  ++ I   L+  R Y  R  +LET+A VP      +LH+     +     +IK   
Sbjct: 107 FLTESVITILDGLYRDRNYA-RFFVLETIARVPYFAFISVLHMYETFGWWRRADYIKVHF 165

Query: 188 EEAENERMHLMTMVEL-VKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEE 246
            E+ NE  HL+ M EL     W +R L       ++     +Y++SP++A+     +E  
Sbjct: 166 AESWNEFHHLLIMEELGGNSLWVDRFLARFAAFFYYFMTVAMYMVSPRMAYHFSECVERH 225

Query: 247 AIHSYTEYLKDIDSGSIENVPAPAIAIDYW-------------------RLPKDATLKDV 287
           A  +Y +++K +    ++ +PAP  A++Y+                   R PK   L DV
Sbjct: 226 AYSTYDKFIK-LHEEDLKKLPAPEAALNYYLNEDLYLFDEFQTARVPCSRRPKIDNLYDV 284

Query: 288 ITVIRADEAHH 298
              IR DEA H
Sbjct: 285 FVNIRDDEAEH 295


>gi|359359056|gb|AEV40963.1| putative immutans protein [Oryza punctata]
 gi|359359107|gb|AEV41013.1| putative immutans protein [Oryza minuta]
          Length = 338

 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 85/191 (44%), Gaps = 22/191 (11%)

Query: 128 YRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALL 187
           + T  ++ I   L+  R Y  R  +LET+A VP      +LH+     +     +IK   
Sbjct: 99  FLTESVITILDGLYRDRNYA-RFFVLETIARVPYFAFISVLHMYETFGWWRRADYIKVHF 157

Query: 188 EEAENERMHLMTMVEL-VKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEE 246
            E+ NE  HL+ M EL     W +R L       ++     +Y++SP++A+     +E  
Sbjct: 158 AESWNEFHHLLIMEELGGNSLWVDRFLARFAAFFYYFMTVAMYMVSPRMAYHFSECVERH 217

Query: 247 AIHSYTEYLKDIDSGSIENVPAPAIAIDYW-------------------RLPKDATLKDV 287
           A  +Y +++K +    ++ +PAP  A++Y+                   R PK   L DV
Sbjct: 218 AYSTYDKFIK-LHEEELKKLPAPEAALNYYLNEDLYLFDEFQTARVPCSRRPKIDNLYDV 276

Query: 288 ITVIRADEAHH 298
              IR DEA H
Sbjct: 277 FVNIRDDEAEH 287


>gi|359359202|gb|AEV41106.1| putative immutans protein [Oryza officinalis]
          Length = 347

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 85/191 (44%), Gaps = 22/191 (11%)

Query: 128 YRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALL 187
           + T  ++ I   L+  R Y  R  +LET+A VP      +LH+     +     +IK   
Sbjct: 108 FLTESVITILDGLYRDRNYA-RFFVLETIARVPYFAFISVLHMYETFGWWRRADYIKVHF 166

Query: 188 EEAENERMHLMTMVEL-VKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEE 246
            E+ NE  HL+ M EL     W +R L       ++     +Y++SP++A+     +E  
Sbjct: 167 AESWNEFHHLLIMEELGGNSLWVDRFLARFAAFFYYFMTVAMYMVSPRMAYHFSECVERH 226

Query: 247 AIHSYTEYLKDIDSGSIENVPAPAIAIDYW-------------------RLPKDATLKDV 287
           A  +Y +++K +    ++ +PAP  A++Y+                   R PK   L DV
Sbjct: 227 AYSTYDKFIK-LHEEDLKKLPAPEAALNYYLNDDLYLFDEFQTARVPCSRRPKIDNLYDV 285

Query: 288 ITVIRADEAHH 298
              IR DEA H
Sbjct: 286 FVNIRDDEAEH 296


>gi|428161219|gb|ACA53387.2| plastid terminal oxidase [Daucus carota]
          Length = 365

 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 84/189 (44%), Gaps = 22/189 (11%)

Query: 130 TVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEE 189
           T  +++I   L+  R Y  R  +LET+A VP      +LH+     +     ++K    E
Sbjct: 123 TDSVIKILDTLYHDRDYA-RFFVLETIARVPYFAFMSVLHMYESFGWWRRADYLKVHFAE 181

Query: 190 AENERMHLMTMVELVKPK-WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAI 248
           + NE  HL+ M EL     W++R L   +   ++     +YLLSP++A+     +E  A 
Sbjct: 182 SWNEMHHLLIMEELGGNAWWFDRFLSQHIAVFYYFMAAFMYLLSPRMAYHFSECVEHHAF 241

Query: 249 HSYTEYLKDIDSGSIENVPAPAIAIDYW-------------------RLPKDATLKDVIT 289
            +Y +++ +     ++ +PA  +AI Y+                   R P    L DV  
Sbjct: 242 ETYDKFI-NAKGEDLKKLPASKVAIKYYTEGDMYLFDEFQTSRAPNTRRPVIDNLYDVFV 300

Query: 290 VIRADEAHH 298
            IR DEA H
Sbjct: 301 NIRDDEAEH 309


>gi|242077584|ref|XP_002448728.1| hypothetical protein SORBIDRAFT_06g032180 [Sorghum bicolor]
 gi|241939911|gb|EES13056.1| hypothetical protein SORBIDRAFT_06g032180 [Sorghum bicolor]
          Length = 351

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 86/191 (45%), Gaps = 22/191 (11%)

Query: 128 YRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALL 187
           + T  ++ I   ++  R Y  R  +LET+A VP      +LHL     +     +IK   
Sbjct: 112 FATESMIMILDGVYRDRNYA-RFFVLETIARVPYFGFISVLHLYETFGWWRRADYIKVHF 170

Query: 188 EEAENERMHLMTMVELV-KPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEE 246
            ++ NE  HL+ M EL     W +R L   +   ++     +Y+LSP++A+     +E  
Sbjct: 171 AQSWNEFHHLLIMEELGGNALWIDRFLARFMAFFYYFMTVAMYMLSPRMAYHFSECVERH 230

Query: 247 AIHSYTEYLKDIDSGSIENVPAPAIAIDYW-------------------RLPKDATLKDV 287
           A  +Y ++LK +    ++ +PAP  A++Y+                   R PK   L DV
Sbjct: 231 AYSTYDKFLK-LHEEELKRLPAPEAALNYYLNEDLYLFDEFQTAGVPCSRRPKIDNLYDV 289

Query: 288 ITVIRADEAHH 298
              +R DEA H
Sbjct: 290 FVNVRDDEAEH 300


>gi|302796591|ref|XP_002980057.1| hypothetical protein SELMODRAFT_112145 [Selaginella moellendorffii]
 gi|300152284|gb|EFJ18927.1| hypothetical protein SELMODRAFT_112145 [Selaginella moellendorffii]
          Length = 279

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 87/191 (45%), Gaps = 22/191 (11%)

Query: 128 YRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALL 187
           + T  ++ I   L+  R Y  R  +LET+A VP      +LH+     +     ++K   
Sbjct: 20  FATDFVIAILDRLYADRDYA-RFYVLETIARVPYFAFVSVLHMYESFGWWRRADYLKVHF 78

Query: 188 EEAENERMHLMTMVELV-KPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEE 246
            E+ NE  HL+ M  L    +W++R L   +   ++    ++Y +SP++A+     +E+ 
Sbjct: 79  AESWNELHHLLVMEALGGDERWFDRFLAQHIAVAYYFLTSLMYTISPRMAYHFSECVEKH 138

Query: 247 AIHSYTEYLKDIDSGSIENVPAPAIAIDYW-------------------RLPKDATLKDV 287
           A  +Y +++K      ++ +PAP +A+DY+                   R P+   L DV
Sbjct: 139 AFSTYDKFIK-AHGEELKKLPAPQVAVDYYTKGDLYMFDEFQTDRLPETRRPRVDNLYDV 197

Query: 288 ITVIRADEAHH 298
              IR DE  H
Sbjct: 198 FVNIREDEWEH 208


>gi|302811522|ref|XP_002987450.1| hypothetical protein SELMODRAFT_126113 [Selaginella moellendorffii]
 gi|300144856|gb|EFJ11537.1| hypothetical protein SELMODRAFT_126113 [Selaginella moellendorffii]
          Length = 280

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 87/191 (45%), Gaps = 22/191 (11%)

Query: 128 YRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALL 187
           + T  ++ I   L+  R Y  R  +LET+A VP      +LH+     +     ++K   
Sbjct: 21  FATDFVIAILDRLYADRDYA-RFYVLETIARVPYFAFVSVLHMYESFGWWRRADYLKVHF 79

Query: 188 EEAENERMHLMTMVELV-KPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEE 246
            E+ NE  HL+ M  L    +W++R L   +   ++    ++Y +SP++A+     +E+ 
Sbjct: 80  AESWNELHHLLVMEALGGDERWFDRFLAQHIAVAYYFLTSLMYTISPRMAYHFSECVEKH 139

Query: 247 AIHSYTEYLKDIDSGSIENVPAPAIAIDYW-------------------RLPKDATLKDV 287
           A  +Y +++K      ++ +PAP +A+DY+                   R P+   L DV
Sbjct: 140 AFSTYDKFIK-AHGEELKKLPAPQVAVDYYTKGDLYMFDEFQTDRLPETRRPRVDNLYDV 198

Query: 288 ITVIRADEAHH 298
              IR DE  H
Sbjct: 199 FVNIREDEWEH 209


>gi|9837152|gb|AAG00450.1|AF274001_1 oxidase [Triticum aestivum]
          Length = 224

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 82/183 (44%), Gaps = 33/183 (18%)

Query: 139 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLM 198
           D+ ++ R   R  +LET+A VP      +LHL     +      IK    E+ NE  HL+
Sbjct: 43  DILYRDRDYARFFVLETIARVPYFAFISVLHLYETFGWSRRADNIKVHFAESMNEFHHLL 102

Query: 199 TMVEL-VKPKWYERMLVLTVQGVFFNAFFV------LYLLSPKLAHRVVGYLEEEAIHSY 251
            M  L     W +R L        F+AFF       +Y+LSP++A+     +E  A  +Y
Sbjct: 103 IMEALGGNSVWLDRFLAR------FSAFFYYFVTVGMYMLSPRMAYHFSECVERHAYSTY 156

Query: 252 TEYLKDIDSGSIENVPAPAIAIDYW-------------------RLPKDATLKDVITVIR 292
            ++LK ++   ++ +PAP +A++Y+                   R PK   L DV   +R
Sbjct: 157 DKFLK-LNGEELKKLPAPEVAVNYYMNEDLYMFDEFQTSRAPNSRRPKVDNLYDVFVNVR 215

Query: 293 ADE 295
            DE
Sbjct: 216 DDE 218


>gi|340057568|emb|CCC51914.1| conserved hypothetical protein, fragment, partial [Trypanosoma
           vivax Y486]
          Length = 205

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 55/96 (57%)

Query: 183 IKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGY 242
           ++ L+ +AE+   H   ++++    + ER++ L + G  F+ F  L++  P++A R++GY
Sbjct: 7   VRVLMAQAESHASHTHILMQVANITYVERVVALFLFGAHFSIFSFLFVFCPRMAFRLMGY 66

Query: 243 LEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRL 278
           L EE++  +T  + DI  G I +   P  A DYW L
Sbjct: 67  LGEESVVIWTHMINDIVLGKIGDRAIPRAAFDYWSL 102


>gi|414584888|tpg|DAA35459.1| TPA: ethylene-responsive transcription factor 3 [Zea mays]
          Length = 547

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 69/156 (44%), Gaps = 9/156 (5%)

Query: 145 RYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELV 204
           RY  R   LET+A VP      +LHL +   +     +IK    ++ NE  HL+ M EL 
Sbjct: 355 RYYARFFALETIARVPYFAFISVLHLYATFGWWRRADYIKVHFAQSWNEFHHLLIMEELG 414

Query: 205 KPK-WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLK-DIDSGS 262
               W++  L   +   ++     +Y+LSP++A+     +E  A  +Y E+LK   D   
Sbjct: 415 GDSLWFDCFLARFMAFFYYFMTVAMYMLSPRMAYHFSECVERHAYSTYDEFLKLHEDEFQ 474

Query: 263 IENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHH 298
               P         R PK   L DV   IR DEA H
Sbjct: 475 ASRTPGS-------RRPKIDNLYDVFVNIREDEAEH 503


>gi|154346286|ref|XP_001569080.1| putative alternative oxidase [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134066422|emb|CAM44214.1| putative alternative oxidase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 486

 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 55/104 (52%), Gaps = 1/104 (0%)

Query: 176 FQHS-GGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPK 234
            +HS G  ++ L  + E+  +H   +  + +    ER LVL +Q + F  +  L+L  P+
Sbjct: 231 LEHSYGKELRGLFAQCESHSVHYQVLSCMTEITLAERGLVLLLQAIHFTIYLALFLFYPR 290

Query: 235 LAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRL 278
           +  R++ Y  EE+   +T+ + D+D G I  +  P +A+ YW L
Sbjct: 291 MGFRLMAYTAEESSVVWTQMVNDVDLGKIAEMCVPQLALQYWGL 334


>gi|428315519|ref|YP_007113401.1| plastoquinol oxidase immutans [Oscillatoria nigro-viridis PCC 7112]
 gi|428239199|gb|AFZ04985.1| plastoquinol oxidase immutans [Oscillatoria nigro-viridis PCC 7112]
          Length = 237

 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 21/188 (11%)

Query: 131 VKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEA 190
           V +L    ++ +  R   R  +LETVA VP      +LHL     +     W+K    E+
Sbjct: 6   VGILVFAINVVYADRPYPRFYVLETVARVPYFSYLSVLHLYETLGWWRKADWLKIHFSES 65

Query: 191 ENERMHLMTMVELVKPK-WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIH 249
            NE  HL+ M  L     W +R+L      +++    ++Y++S K A+  +  +E  A  
Sbjct: 66  WNELHHLLIMESLGGSAFWGDRLLARATALIYYWIIILVYMVSSKSAYNFMELVEGHAYA 125

Query: 250 SYTEYLKDIDSGSIENVPAPAIAIDYW-------------------RLPKDATLKDVITV 290
           SY ++L + ++ +++  PAP +A+ Y+                   R PK   L DV   
Sbjct: 126 SYDKFL-NAEAEALKQQPAPDVALQYYRDGDLYMFDEFQTSSANVFRRPKIDNLYDVFVA 184

Query: 291 IRADEAHH 298
           IR DE  H
Sbjct: 185 IRDDEMEH 192


>gi|449016710|dbj|BAM80112.1| plastid terminal oxidase [Cyanidioschyzon merolae strain 10D]
          Length = 430

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 79/182 (43%), Gaps = 23/182 (12%)

Query: 139 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLM 198
           D  F  R   R   LETVA +P      +LHL     + H     +    E  NE  HL+
Sbjct: 170 DWAFTDRPIARFWFLETVARMPYFSYLSVLHLYETFNWLHLAELRRTHFAEEWNELHHLL 229

Query: 199 TMVELV-KPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKD 257
            M  L    KW +R L   +  +++    V+Y++SP+L++     LE+ A+ +Y ++L +
Sbjct: 230 IMSALGGDAKWSDRFLAYHLSIIYYWLLVVMYIVSPRLSYNFSELLEKHAVDTYEQFLTE 289

Query: 258 IDSGSIENVPAPAIAIDYW---------------------RLPKDATLKDVITVIRADEA 296
            +   ++ +PAPAIA+ Y+                       P   TL D    IR DE 
Sbjct: 290 -NEHRLKALPAPAIAVRYYANEVAYTFQAFGDENGSAVETSRPPVQTLYDAFLNIRLDEE 348

Query: 297 HH 298
            H
Sbjct: 349 EH 350


>gi|307109615|gb|EFN57853.1| hypothetical protein CHLNCDRAFT_143310 [Chlorella variabilis]
          Length = 289

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 78/184 (42%), Gaps = 17/184 (9%)

Query: 134 LRIPTDLFFQRRYGCRAMMLETVAAVPGMVG------GMLLHLKSLRKFQHSGGWIKALL 187
           L  P D   +R  G R +   +V  V G+ G       +  H++S+   +   GW+    
Sbjct: 86  LGAPADRLTERSLGKRILCFTSVGTVSGLAGKPWGRGAVFNHVRSILFNKPDNGWVHTAA 145

Query: 188 EEAENERMHLMTMVELV----KPKWYERMLVLTVQG--VFFNAFFVLYLLSPKLAHRVVG 241
             AE  R H   +        +P  + R+  L  Q   V F     +Y   P  A+    
Sbjct: 146 ANAECVRAHAGIVANTTWTPAQPPLWARLFHLMFQARVVMFLQILPVYFFLPSAAYAYDA 205

Query: 242 YLEEEAIHSYTEYLKDIDSGSIE---NVPAPAIAIDYWRLPKDATLKDVITVIRADEAHH 298
           +  EE +  Y++ +  I SG  +   +  AP + + Y+ LP+ A L+D +  +RADEA  
Sbjct: 206 FRAEEQV--YSQAISLIGSGRFKTWKSTRAPGLGVSYYALPEGAMLRDALLRMRADEACI 263

Query: 299 RDVN 302
             +N
Sbjct: 264 HQLN 267


>gi|108442448|gb|ABF85790.1| plastid terminal oxidase [Haematococcus pluvialis]
          Length = 441

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 92/209 (44%), Gaps = 28/209 (13%)

Query: 139 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKAL-LEEAENERMHL 197
           D+ + +R   +  +LETVA +P      +LHL     F  +G  ++ +   E  NE  HL
Sbjct: 228 DVVYDKRPIQKFWVLETVARIPYFAYISILHLYESLGFWRAGAELRKIHFAEEWNELHHL 287

Query: 198 MTMVELVKPK-WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLK 256
             M  L   + W++R L      +++      YL+SPK+A+  +  +E  A  +Y E+L+
Sbjct: 288 QIMESLGGDQAWFDRFLAEHAAVLYYWLLIAFYLVSPKVAYNFMQRVEHHAADTYCEFLE 347

Query: 257 DIDSGSIENVPAPAIAIDYW---------------------RLPKDATLKDVITVIRADE 295
             +   + ++P P +A++Y+                     R P   TL DV   +R DE
Sbjct: 348 S-NRELLASIPPPVVALNYYRNQDLYLFDSFQTSSKASGVQRRPDCNTLLDVFINVRDDE 406

Query: 296 AHHRDVNHFASDIQFQGKEL---RDAPAP 321
             H     FA   +   K+L   R +P P
Sbjct: 407 LEHV-ATMFAMQNEEIAKQLAIGRGSPGP 434


>gi|157782926|gb|ABV72391.1| plastid terminal oxidase [Haematococcus pluvialis]
          Length = 441

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 93/213 (43%), Gaps = 36/213 (16%)

Query: 139 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKAL-LEEAENERMHL 197
           D+ + +R   +  +LETVA +P      +LHL     F  +G  ++ +   E  NE  HL
Sbjct: 228 DVVYDKRPIQKFWVLETVARIPYFAYISILHLYESLGFWRAGAELRKIHFAEEWNELHHL 287

Query: 198 MTMVELVKPK-WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLK 256
             M  L   + W++R L      +++      YL+SPK+A+  +  +E  A  +Y E+L+
Sbjct: 288 QIMESLGGDQAWFDRFLAEHAAVLYYWLLIAFYLVSPKVAYNFMQRVEHHAADTYCEFLE 347

Query: 257 DIDSGSIENVPAPAIAIDYW---------------------RLPKDATLKDVITVIRADE 295
             +   + ++P P +A++Y+                     R P   TL DV   +R DE
Sbjct: 348 S-NRELLASIPPPVVALNYYRNQDLYLFDSFQTSSKASGVQRRPDCNTLLDVFINVRDDE 406

Query: 296 AHHRDVNHFASDIQFQGKEL-------RDAPAP 321
                + H A+    Q +E+       R +P P
Sbjct: 407 -----LEHVATMFAMQNEEIAKQLAIGRGSPGP 434


>gi|224009886|ref|XP_002293901.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220970573|gb|EED88910.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 292

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 87/181 (48%), Gaps = 23/181 (12%)

Query: 139 DLFF--QRRYGCRAMMLETVAAVPGMVGGMLLHL-KSLRKFQHSGGWIKALLEEAENERM 195
           D FF  + R   R   LET+A VP      +LHL ++L K++    ++K    E+ NE  
Sbjct: 87  DTFFVGEDRAYARFYALETIARVPYFSYLSVLHLYETLGKWRRVK-YLKLHFAESWNEMH 145

Query: 196 HLMTMVELV-KPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEY 254
           HL+ M EL    ++++R L       +F     LYL++P  A+ +   +EE A  +Y  +
Sbjct: 146 HLLIMEELGGSERFFDRFLAQHCAFGYFLIVITLYLINPVQAYNLNQDVEEHAFATYDTF 205

Query: 255 LKDIDSGSIENVPAPAIAIDYW-----------------RLPKDATLKDVITVIRADEAH 297
           LK+ ++  ++  PAP +AI+Y+                 R P+   L DV   IR DE  
Sbjct: 206 LKE-NAEMLKTKPAPKVAIEYYRHGDMYMFDEFQTECELRRPEINNLYDVFVAIRDDEMA 264

Query: 298 H 298
           H
Sbjct: 265 H 265


>gi|308809309|ref|XP_003081964.1| unnamed protein product [Ostreococcus tauri]
          Length = 260

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 81/197 (41%), Gaps = 23/197 (11%)

Query: 139 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLM 198
           D  +  R   R   LETVA VP      +LHL     +     ++K    E  NE  HL+
Sbjct: 7   DYLYAGRSYARFHALETVARVPYFSFMSVLHLYETFGWWRRADYLKVHFAETMNEYHHLL 66

Query: 199 TMVELVKPK-WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKD 257
            M  L   + W +R     V   ++      YL+SP+ A+ ++  +E  A  +Y ++L +
Sbjct: 67  IMESLGGAELWRDRFFAQHVAVAYYWICVAQYLVSPRWAYNLLEQVESHAYATYDKFL-E 125

Query: 258 IDSGSIENVPAPAIAIDYW------------------RLPKDATLKDVITVIRADEAHHR 299
            +   ++  PAP +A+ Y+                  R PK   L DV   +R DEA H 
Sbjct: 126 ANEEVLKKTPAPRVAVAYYTKGDLYLFDEFQTGEKGARRPKIDNLYDVFVNVRNDEAEHM 185

Query: 300 DVNHFASDIQFQGKELR 316
               F    Q  G  LR
Sbjct: 186 KTMEF---CQRPGNGLR 199


>gi|116060431|emb|CAL55767.1| unnamed protein product, partial [Ostreococcus tauri]
          Length = 267

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 81/197 (41%), Gaps = 23/197 (11%)

Query: 139 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLM 198
           D  +  R   R   LETVA VP      +LHL     +     ++K    E  NE  HL+
Sbjct: 14  DYLYAGRSYARFHALETVARVPYFSFMSVLHLYETFGWWRRADYLKVHFAETMNEYHHLL 73

Query: 199 TMVELVKPK-WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKD 257
            M  L   + W +R     V   ++      YL+SP+ A+ ++  +E  A  +Y ++L +
Sbjct: 74  IMESLGGAELWRDRFFAQHVAVAYYWICVAQYLVSPRWAYNLLEQVESHAYATYDKFL-E 132

Query: 258 IDSGSIENVPAPAIAIDYW------------------RLPKDATLKDVITVIRADEAHHR 299
            +   ++  PAP +A+ Y+                  R PK   L DV   +R DEA H 
Sbjct: 133 ANEEVLKKTPAPRVAVAYYTKGDLYLFDEFQTGEKGARRPKIDNLYDVFVNVRNDEAEHM 192

Query: 300 DVNHFASDIQFQGKELR 316
               F    Q  G  LR
Sbjct: 193 KTMEF---CQRPGNGLR 206


>gi|238013864|gb|ACR37967.1| unknown [Zea mays]
 gi|414584890|tpg|DAA35461.1| TPA: alternative oxidase [Zea mays]
          Length = 341

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 79/177 (44%), Gaps = 21/177 (11%)

Query: 142 FQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMV 201
           ++ R   R  +LET+A VP      +LH+     +     ++K    ++ NE  HL+ M 
Sbjct: 117 YRDRNYARFFVLETIARVPYFAFISVLHMYETFGWWRRADYLKVHFAQSLNEFHHLLIME 176

Query: 202 EL-VKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDS 260
           EL     W +  L   +   ++     +Y+LSP++A+     +E  A  +Y ++LK +  
Sbjct: 177 ELGGNAIWIDCFLARFMAFFYYFMTVAMYMLSPRMAYHFSECVERHAYSTYDKFLK-LHE 235

Query: 261 GSIENVPAPAIAIDYW-------------------RLPKDATLKDVITVIRADEAHH 298
             ++ +PAP  A++Y+                   R PK   L DV   IR DEA H
Sbjct: 236 EELKTLPAPEAALNYYLNEDLYLFDEFQTTRIPCSRRPKIDNLYDVFVNIRDDEAEH 292


>gi|75907278|ref|YP_321574.1| oxidase [Anabaena variabilis ATCC 29413]
 gi|75701003|gb|ABA20679.1| plastoquinol oxidase immutans [Anabaena variabilis ATCC 29413]
          Length = 228

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 78/188 (41%), Gaps = 21/188 (11%)

Query: 131 VKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEA 190
           V +L    +  ++ R   R  +LETVA VP      +LHL     +     W+K    E+
Sbjct: 6   VGILVFVINTVYRDRPYPRFYVLETVARVPYFSYLSVLHLYETLGWWRKADWLKVHFAES 65

Query: 191 ENERMHLMTMVELVKPK-WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIH 249
            NE  HL+ M  L     W +R L  T   +++     +Y +SP+ A+  +  +E+ A  
Sbjct: 66  WNELHHLLIMESLGGAGFWGDRFLAKTAALIYYWIIIAVYFVSPRSAYNFMELVEQHAYS 125

Query: 250 SYTEYLKDIDSGSIENVPAPAIAIDYW-------------------RLPKDATLKDVITV 290
           SY ++L       ++  PAP +A  Y+                   R P    L DV   
Sbjct: 126 SYDKFLT-THEAELKTQPAPEVAKIYYRDGDLYMFDEFQTAHSPSERRPNIDNLYDVFVA 184

Query: 291 IRADEAHH 298
           IR DE  H
Sbjct: 185 IRDDEMEH 192


>gi|302837648|ref|XP_002950383.1| hypothetical protein VOLCADRAFT_90709 [Volvox carteri f.
           nagariensis]
 gi|300264388|gb|EFJ48584.1| hypothetical protein VOLCADRAFT_90709 [Volvox carteri f.
           nagariensis]
          Length = 468

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 80/195 (41%), Gaps = 23/195 (11%)

Query: 139 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKAL-LEEAENERMHL 197
           D+ F  R   R   LETVA +P      +LHL     +  +G  ++ +   E  NE  HL
Sbjct: 260 DVLFNNRPIQRFWFLETVARMPYFSYISVLHLYESFGWWRAGAELRKIHFAEEWNELHHL 319

Query: 198 MTMVELVKPK-WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLK 256
             M  L   K W++R   L    V++     LY+ SP+LA+     +E  A+ +Y E++ 
Sbjct: 320 QIMESLGGDKLWFDRFCALHAAVVYYWILLALYVFSPELAYNFSELIEAHAVDTYGEFV- 378

Query: 257 DIDSGSIENVPAPAIAIDYW--------------------RLPKDATLKDVITVIRADEA 296
           D +   ++++P P +A  Y+                    R P    L DV   IR DE 
Sbjct: 379 DANEELLKSLPPPLVAAMYYRSQDLYMFDSFQTSQPLKNPRRPPCKNLHDVFCNIRDDEL 438

Query: 297 HHRDVNHFASDIQFQ 311
            H        D   Q
Sbjct: 439 EHVKTMRACQDATVQ 453


>gi|427728396|ref|YP_007074633.1| Alternative oxidase [Nostoc sp. PCC 7524]
 gi|427364315|gb|AFY47036.1| Alternative oxidase [Nostoc sp. PCC 7524]
          Length = 228

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 78/188 (41%), Gaps = 21/188 (11%)

Query: 131 VKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEA 190
           V +L    +  ++ R   R  +LETVA VP      +LHL           W+K    E+
Sbjct: 6   VGILVFVINTIYRDRPYPRFYVLETVARVPYFSYLSVLHLYETLGLWRKADWLKVHFAES 65

Query: 191 ENERMHLMTMVELVKPK-WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIH 249
            NE  HL+ M  L     W +R L  T   +++     LY+++P  A+  +  +E  A +
Sbjct: 66  WNELHHLLIMENLGGAGFWGDRFLAKTTALIYYWIITALYIINPGAAYNFMELVENHAYN 125

Query: 250 SYTEYLKDIDSGSIENVPAPAIAIDYW-------------------RLPKDATLKDVITV 290
           SY ++L       ++  PAP +A  Y+                   R P+   L DV   
Sbjct: 126 SYDKFLTS-HEAELKAQPAPEVATLYYRDGDLYMFDEFQTAHNPTERRPQIENLYDVFVA 184

Query: 291 IRADEAHH 298
           IR DE  H
Sbjct: 185 IRDDEMEH 192


>gi|17229588|ref|NP_486136.1| plastoquinol terminal oxidase [Nostoc sp. PCC 7120]
 gi|17131187|dbj|BAB73795.1| oxidase [Nostoc sp. PCC 7120]
          Length = 230

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 77/188 (40%), Gaps = 21/188 (11%)

Query: 131 VKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEA 190
           V +L    +  ++ R   R  +LETVA VP      +LHL     +     W+K    E+
Sbjct: 6   VGILVFVINTVYRDRPYPRFYVLETVARVPYFSYLSVLHLYETLGWWRKADWLKVHFAES 65

Query: 191 ENERMHLMTMVELVKPK-WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIH 249
            NE  HL+ M  L     W +R L  T   +++     +Y +SP  A+  +  +E+ A  
Sbjct: 66  WNELHHLLIMESLGGAGFWGDRFLAKTAALIYYWIIIAVYFVSPHSAYNFMEQVEQHAYS 125

Query: 250 SYTEYLKDIDSGSIENVPAPAIAIDYW-------------------RLPKDATLKDVITV 290
           SY ++L       ++  PAP +A  Y+                   R P    L DV   
Sbjct: 126 SYDKFLT-THEAELKTQPAPEVAKTYYRDGDLYMFDEFQTAHSPSERRPNIDNLYDVFVA 184

Query: 291 IRADEAHH 298
           IR DE  H
Sbjct: 185 IRDDEMEH 192


>gi|378706340|gb|AFC35141.1| hypothetical protein OtV6_233 [Ostreococcus tauri virus RT-2011]
          Length = 201

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 4/161 (2%)

Query: 139 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLM 198
           D  ++ R   R  +LETVA VP      +LHL           +++   E+  NE  HL+
Sbjct: 30  DKVYKDRDYARFYVLETVARVPYFSFVSVLHLYETLGLWRKADYLETHFEQTMNEYHHLL 89

Query: 199 TMVELV-KPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKD 257
            M +L    ++ +R         ++    ++YL SP++A+ +   +EE A H+Y E+LK 
Sbjct: 90  IMEQLGGDERFIDRFFAQHTAFAYYWLTCLIYLASPRMAYNLSEQIEEHAYHTYDEFLKK 149

Query: 258 IDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHH 298
                +   P P +A +Y+       L DV T +R DE  H
Sbjct: 150 HGENLLLERP-PIVAANYY--GDVNNLYDVFTRVRDDEGDH 187


>gi|302830420|ref|XP_002946776.1| hypothetical protein VOLCADRAFT_79367 [Volvox carteri f.
           nagariensis]
 gi|300267820|gb|EFJ52002.1| hypothetical protein VOLCADRAFT_79367 [Volvox carteri f.
           nagariensis]
          Length = 437

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 23/169 (13%)

Query: 152 MLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKAL-LEEAENERMHLMTMVELVKPK-WY 209
           +LETVA +P      +LHL     F  +G  ++ +   E  NE  HL  M  L   + W 
Sbjct: 218 VLETVARIPYFAYISILHLYESLGFWRAGAELRKIHFAEEWNEMHHLQIMESLGGDRAWM 277

Query: 210 ERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAP 269
           +R +       ++    + YL+SP++A+  +  +E  A  +YT +L+  ++  +E++P P
Sbjct: 278 DRFIAEHSAVFYYWVLILFYLVSPRMAYNFMQRVELHAADTYTAFLQR-NAAVLESIPPP 336

Query: 270 AIAIDYW--------------------RLPKDATLKDVITVIRADEAHH 298
            +A+ Y+                    R P+  TL DV   IR DE  H
Sbjct: 337 MVALQYYYSEDLYLFDEFQTASRGAPPRRPRCETLLDVFKNIRDDEMEH 385


>gi|303284211|ref|XP_003061396.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456726|gb|EEH54026.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 222

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 84/204 (41%), Gaps = 30/204 (14%)

Query: 139 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLM 198
           D  ++ R   R   LETVA VP      +LHL     F     ++K    +  NE  HL+
Sbjct: 21  DKLYEGRDYSRFYALETVARVPYFSFLSVLHLYETLGFWRRADYLKVHFAQTMNEFHHLL 80

Query: 199 TMVELV-KPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKD 257
            M  L    K+ +R     +   ++    ++YL+SP++A+ +   +EE A H+Y  +L++
Sbjct: 81  IMESLGGDDKFRDRFFAQHMAVGYYGIACLMYLVSPRMAYNLSEQVEEHAYHTYDVFLRE 140

Query: 258 IDSGSIENVPAPAIAIDYW-------------------------RLPKDATLKDVITVIR 292
            +       P P IA+ Y+                         R P+  +L DV   +R
Sbjct: 141 NEERLKRQSP-PPIAVHYYQEGDLFLFDEFQTGAVTGVARGADKRRPRIDSLYDVFVNVR 199

Query: 293 ADEAHHRDVNHFASDIQFQGKELR 316
            DEA H     F    Q  G  LR
Sbjct: 200 NDEAEHMKTMQFC---QLPGTILR 220


>gi|384501421|gb|EIE91912.1| hypothetical protein RO3G_16623 [Rhizopus delemar RA 99-880]
          Length = 134

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/58 (55%), Positives = 37/58 (63%)

Query: 109 LSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGM 166
           L I    HH PTT  DK AY TVK LRI  D +F+  +  RA MLET+AAVPGM  G+
Sbjct: 70  LDIGPNNHHKPTTLGDKAAYYTVKTLRILPDTYFRGNHYMRAAMLETIAAVPGMDVGV 127


>gi|145351913|ref|XP_001420304.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580538|gb|ABO98597.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 245

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 83/197 (42%), Gaps = 24/197 (12%)

Query: 139 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLM 198
           +L+  R Y  R   LETVA VP      +LHL     +     ++K    E  NE  HL+
Sbjct: 19  NLYGGRSYA-RFHALETVARVPYFSFMSVLHLYETFGWWRKADYLKVHFAETMNEYHHLL 77

Query: 199 TMVELVKPK-WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKD 257
            M  L   + W +R +   +   ++      YL+SP+ A+ ++  +E  A  +Y  +L +
Sbjct: 78  IMESLGGAELWKDRFVAQHIAVAYYWICVAQYLVSPRWAYNLLEQVESHAYATYDGFL-N 136

Query: 258 IDSGSIENVPAPAIAIDYW------------------RLPKDATLKDVITVIRADEAHHR 299
            +   ++  P P++A+ Y+                  R PK   L DV   +R DEA H 
Sbjct: 137 ANEEVLKATPPPSVAVQYYTKGDLYLFDEFQTVDRGERRPKIDNLYDVFVNVRNDEAEHM 196

Query: 300 DVNHFASDIQFQGKELR 316
               F    Q  G  LR
Sbjct: 197 KTMEFC---QRPGNGLR 210


>gi|308812468|ref|XP_003083541.1| quinol-to-oxygen oxidoreductase (ISS) [Ostreococcus tauri]
 gi|116055422|emb|CAL58090.1| quinol-to-oxygen oxidoreductase (ISS) [Ostreococcus tauri]
          Length = 505

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 90/206 (43%), Gaps = 24/206 (11%)

Query: 114 KKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSL 173
            +  VP  +L K  Y  + L  +   LF + +   R   LETVA +P       L    +
Sbjct: 221 NRPEVPAPWLLKAPY--LALCFMLDKLFDETKPVQRFWFLETVARMPYYSYTAALTFYEI 278

Query: 174 RKFQHSGGWIKAL-LEEAENERMHLMTMVELVKP-KWYERMLVLTVQGVFFNAFFVLYLL 231
             +   G  ++ +   E  NE  HL+ M  L     W +R L      V++    +L+ +
Sbjct: 279 LGWYRGGAELRKIHFAEEWNEYHHLLIMESLGGDVSWRDRFLGQHAALVYYGVLILLWFM 338

Query: 232 SPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYW--------------- 276
           SP LA+     +E  A+ +Y +++ D ++  ++ +PAP IA++Y+               
Sbjct: 339 SPALAYNFSELIEAHAVDTYAQFV-DQNAELLKTMPAPRIAVEYYEGADLYLFDEFQTAR 397

Query: 277 ----RLPKDATLKDVITVIRADEAHH 298
               R P+  TL DV + IR DE  H
Sbjct: 398 EVRTRRPRIRTLYDVFSNIRDDEGEH 423


>gi|157782928|gb|ABV72392.1| plastid terminal oxidase [Haematococcus pluvialis]
          Length = 447

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 87/196 (44%), Gaps = 21/196 (10%)

Query: 132 KLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHL-KSLRKFQHSGGWIKALLEEA 190
            +L +  D+ F+ R   R   LETVA +P       LHL +SL  ++ +    K    E 
Sbjct: 236 NILCLLIDVLFENRPIQRFWFLETVARMPYFSYISCLHLYESLGWWRAAAELRKIHFAEE 295

Query: 191 ENERMHLMTMVELVKPK-WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIH 249
            NE  HL  M  L   + W++R +      V++    +LY+ SP LA+     LE  A+ 
Sbjct: 296 WNELHHLQIMESLGGDQLWFDRFVGYHSAIVYYWVLVLLYVASPSLAYTFSELLEAHAVD 355

Query: 250 SYTEYLKDIDSGSIENVPAPAIAIDYWR---------------LPKDATLK---DVITVI 291
           +Y E+L D +   ++++  P +A +Y+R                P++  L+   DV   I
Sbjct: 356 TYGEFL-DANEPLLKSLAPPLVAAEYYRSCDLYLFDEFQTSNVTPRNPPLENLYDVFCAI 414

Query: 292 RADEAHHRDVNHFASD 307
           + DE  H    H   D
Sbjct: 415 KEDEGEHVKTMHACVD 430


>gi|108442436|gb|ABF85789.1| plastid terminal oxidase [Haematococcus pluvialis]
          Length = 447

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 86/202 (42%), Gaps = 33/202 (16%)

Query: 132 KLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLE--- 188
            +L +  D+ F+ R   R   LETVA +P       LHL        S GW +A  E   
Sbjct: 236 NILCLLIDVLFENRPIQRFWFLETVARMPYFSYISCLHL------YESLGWWRAAAELRK 289

Query: 189 ----EAENERMHLMTMVELVKPK-WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYL 243
               E  NE  HL  M  L   + W++R +      V++    +LY+ SP LA+     L
Sbjct: 290 LHFAEEWNELHHLQIMESLGGDQLWFDRFVGYHSAIVYYWVLVLLYVASPSLAYTFSELL 349

Query: 244 EEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWR---------------LPKDATLK--- 285
           E  A+ +Y E+L D +   ++++  P +A +Y+R                P++  L+   
Sbjct: 350 EAHAVDTYGEFL-DANEPLLKSLAPPLVAAEYYRSCDLYLFDEFQTSNVTPRNPPLENLY 408

Query: 286 DVITVIRADEAHHRDVNHFASD 307
           DV   I+ DE  H    H   D
Sbjct: 409 DVFCAIKEDEGEHVKTMHACVD 430


>gi|404325818|gb|AFR58666.1| plastid terminal oxidase [Dunaliella salina]
          Length = 451

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 86/208 (41%), Gaps = 37/208 (17%)

Query: 118 VPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQ 177
           V TT+  ++ Y  V L+    DL +  R   R   LETVA +P       +HL       
Sbjct: 228 VETTWYIRLLYDAVCLM---LDLVYNNRPIQRFWFLETVARMPYFSYISCIHL------Y 278

Query: 178 HSGGWIKALLE-------EAENERMHLMTMVELVKPK-WYERMLVLTVQGVFFNAFFVLY 229
            + GW +A  E       E  NE  HL  M  L   + W++R L       ++     LY
Sbjct: 279 ETLGWWRAAAELRKIHFAEEWNELHHLQIMEALGGDRLWFDRFLAYHSAIAYYWVLVGLY 338

Query: 230 LLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRL----------- 278
           + SPKLA+     LE  A+ +Y E++   +   ++++  P +A  Y+R            
Sbjct: 339 ICSPKLAYNFSELLEAHAVDTYGEFVSS-NEELLKSLEPPLVAAQYYRSPDLYMFDEFQT 397

Query: 279 --------PKDATLKDVITVIRADEAHH 298
                   PK   L DV   IR DEA H
Sbjct: 398 DISSGKRNPKCDNLYDVFVNIRDDEAEH 425


>gi|145354902|ref|XP_001421713.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581951|gb|ABP00007.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 240

 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 88/195 (45%), Gaps = 24/195 (12%)

Query: 125 KVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGM-VGGMLLHLKSLRKFQHSGGWI 183
           KV Y  V L  +   LF + +   R   LETVA +P      ML   + L  ++ S    
Sbjct: 31  KVPY--VALCVMLDKLFDETQPVQRFWFLETVARMPYFSYTSMLTFYEILGWWRRSSELR 88

Query: 184 KALLEEAENERMHLMTMVELV-KPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGY 242
           K    E  NE  HL+ M  L     W +R L      V++     L+L+SP LA+     
Sbjct: 89  KVHFAEEWNEYHHLLVMESLGGDACWRDRFLGQHAAIVYYFVLVALWLISPALAYNFSEL 148

Query: 243 LEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYW-------------------RLPKDAT 283
           +E  A+ +Y +++ D ++  ++++PAP IA++Y+                   R P+  +
Sbjct: 149 IEGHAVDTYGQFV-DQNAELLKSMPAPRIAVEYYEAADLYLFDEFQTAREVRLRRPQIRS 207

Query: 284 LKDVITVIRADEAHH 298
           L DV + IR DE  H
Sbjct: 208 LFDVFSNIRDDEGEH 222


>gi|118637020|emb|CAI77910.1| plastid terminal oxidase precursor [Guillardia theta]
          Length = 222

 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 71/166 (42%), Gaps = 11/166 (6%)

Query: 88  REDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYG 147
           R+DG+ W    + P  T      +D+            +A   V +L+   D ++ ++  
Sbjct: 66  RKDGTTWGSKSY-PVSTVEEPEPLDIVT--------KSIAQALVTVLKGSLDWYYHKKSD 116

Query: 148 -CRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKP 206
             R  +LETVA VP      +LHL     +     WIK    EA+NE  HL+ M  L   
Sbjct: 117 FARFFVLETVARVPYFAYMSVLHLYESFGYHDRAHWIKIHYAEADNELHHLLIMEALGGN 176

Query: 207 KWYERMLVLTVQGVFFNAFFV-LYLLSPKLAHRVVGYLEEEAIHSY 251
           K +    +       +N F V  Y L P+ AH V+  +E  A H+Y
Sbjct: 177 KEFSDRWIAQHAAFAYNWFCVTFYFLHPRGAHNVMFLIENHAYHTY 222


>gi|298710389|emb|CBJ25453.1| alternative oxidase, mitochondrial protein [Ectocarpus siliculosus]
          Length = 651

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 79/186 (42%), Gaps = 32/186 (17%)

Query: 139 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKAL------LEEAEN 192
           D+ F+ R   R   LETVA +P        +L  L  ++  G W  A         E  N
Sbjct: 328 DVVFEDRPIQRFWFLETVARMP-----YFSYLSMLFLYETLGWWSGAAEVRKVHFAEEYN 382

Query: 193 ERMHLMTMVELV-KPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSY 251
           E  HL  M  L    +W +R L      ++F+   + YL+SP LA+     +E  A+ +Y
Sbjct: 383 EMQHLRIMESLGGDTRWSDRFLARHAAIIYFSVLILGYLVSPFLAYNFSELIESHAVDTY 442

Query: 252 TEYLKDIDSGSIENVPAPAIAIDYW-------------------RLPKDATLKDVITVIR 292
           TE+  + +   ++++P    A+DY+                   R P+   L DV + IR
Sbjct: 443 TEF-AEANEELLKSLPPTPQALDYYHGGDMYLFDEFQTSRPAFSRRPRIQNLYDVFSCIR 501

Query: 293 ADEAHH 298
            DE  H
Sbjct: 502 DDELEH 507


>gi|449016709|dbj|BAM80111.1| plastid terminal oxidase [Cyanidioschyzon merolae strain 10D]
          Length = 467

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 83/197 (42%), Gaps = 22/197 (11%)

Query: 130 TVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEE 189
           T  LL    ++ F+ R   R   LE VA VP      +LHL       H     +A   E
Sbjct: 150 TYTLLCRLIEMLFRDRPIERFWFLEMVARVPYFSFLSVLHLYESLDLAHLTELRRAHFIE 209

Query: 190 AENERMHLMTMVELV-KPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAI 248
             NE  HL+ M  L    +W +R L   V  V++ A  +LY+++P +A+     LE+ A 
Sbjct: 210 EWNEMHHLLIMQALGGDGRWLDRFLAYHVSLVYYWALVLLYMIAPAVAYNFSELLEKHAY 269

Query: 249 HSYTEYLKDIDSGSIENVPAPAIAIDYWRL--------------------PKDATLKDVI 288
            +Y  +++  ++  +  +PAP++A  Y+                      P  ATL D  
Sbjct: 270 DTYAVFIEQNET-LLRTLPAPSVARAYYESGERFRFRADTINAETHACEGPPVATLFDAF 328

Query: 289 TVIRADEAHHRDVNHFA 305
             IR DE  H  +  F 
Sbjct: 329 VNIRDDEGEHIKMMEFC 345


>gi|412987963|emb|CCO19359.1| predicted protein [Bathycoccus prasinos]
          Length = 393

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 80/186 (43%), Gaps = 27/186 (14%)

Query: 139 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLM 198
           D  ++ R   R   LET+A VP      +LHL     +     ++K    E  NE  HL+
Sbjct: 90  DKLYEGRDYPRFYALETIARVPYFSFLSVLHLYESFGWWRRADYLKVHFAETMNEYHHLL 149

Query: 199 TMVELVKPKWY-ERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKD 257
            M  +     + +R     V  V+F    ++Y++SP++A+ +   +EE A  +Y ++LK 
Sbjct: 150 IMEAMGGADSFKDRFFAQHVAVVYFWVAVLIYMVSPRMAYNLSEQVEEHAYATYDDFLKR 209

Query: 258 IDSGSIENVPAPAIAIDYWRL-------------------------PKDATLKDVITVIR 292
            +   ++  PA  +A+ Y++L                         PK   + DVI  +R
Sbjct: 210 KEE-ELKQTPACGVAVSYFQLGDLYLFDEFQTNVYEGLNKATNIRRPKIKNMYDVIENVR 268

Query: 293 ADEAHH 298
            DE  H
Sbjct: 269 NDELEH 274


>gi|219129931|ref|XP_002185130.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217403309|gb|EEC43262.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 531

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 99/214 (46%), Gaps = 30/214 (14%)

Query: 112 DLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHL- 170
           +++   +   F+ K+ Y    L  +  ++F  +    R  +LETVA +P      +LHL 
Sbjct: 194 EMQNGPIEAPFVIKIPY--FGLCYMLDEVFDGKYIPSRFFLLETVARMPYFSYITMLHLY 251

Query: 171 KSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPK-WYERMLVLTVQGVFFNAFFVLY 229
           ++L  ++ S G  +    E  NE  HL+ M  L   + W+ R L      V++ A  +L+
Sbjct: 252 ETLGFWRRSAGMKRIHFAEELNEFHHLLIMESLGGDQAWWVRFLAQHSAIVYYVALCLLW 311

Query: 230 LLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYW------------- 276
            +SP L++R    LE  A+ +Y ++L D +  +++ +P P  AI+Y+             
Sbjct: 312 GISPSLSYRFSELLETHAVSTYGQFL-DENEEALKKLPPPLPAIEYYAFGSSDPFYAEFQ 370

Query: 277 ----------RLPKDA--TLKDVITVIRADEAHH 298
                     R P ++  +L +V   I+ADE  H
Sbjct: 371 TTAMSQGQPLRRPGESMLSLYEVFQAIKADELDH 404


>gi|404325822|gb|AFR58668.1| plastid terminal oxidase [Dunaliella bardawil]
          Length = 451

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 89/219 (40%), Gaps = 37/219 (16%)

Query: 118 VPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQ 177
           V TT+  ++ Y  V L+    D+ +  R   R   LETVA +P       +HL       
Sbjct: 228 VETTWYIRLLYDAVCLM---LDVVYNNRPLQRFWFLETVARMPYFSYISCIHL------Y 278

Query: 178 HSGGWIKALLE-------EAENERMHLMTMVELV-KPKWYERMLVLTVQGVFFNAFFVLY 229
            + GW +A  E       E  NE  HL  M  L     W++R L       ++     LY
Sbjct: 279 ETLGWWRAAAELRKIHFAEEWNELHHLQIMEALGGDCMWFDRFLAYHSAIAYYWVLVALY 338

Query: 230 LLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYW------------- 276
           + SP+L++     LE  A+ +Y+E++   +   ++++  P +A  Y+             
Sbjct: 339 IFSPRLSYNFSELLEAHAVDTYSEFVSS-NEVLLKSLEPPLVAAQYYRSPDLYMFDEFQT 397

Query: 277 ------RLPKDATLKDVITVIRADEAHHRDVNHFASDIQ 309
                 R PK   L DV   IR DEA H    +   D +
Sbjct: 398 DIKSEKRTPKCDNLYDVFVNIRDDEAEHVKTMNACQDAE 436


>gi|240275759|gb|EER39272.1| alternative oxidase [Ajellomyces capsulatus H143]
          Length = 103

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 47/67 (70%), Gaps = 5/67 (7%)

Query: 250 SYTEYLKDIDSGSI---ENVPAPAIAIDYWRLPKDA-TLKDVITVIRADEAHHRDVNHFA 305
           +YT  +KD++SG +    N PAP IA+ YW++P+   T+ D++  IRADEA HR+VNH  
Sbjct: 2   TYTHAIKDLESGKLPNWANQPAPDIAVAYWQMPEGKRTILDLLYYIRADEAKHREVNHTL 61

Query: 306 SDIQFQG 312
           ++++ QG
Sbjct: 62  ANLK-QG 67


>gi|159491010|ref|XP_001703466.1| plastid terminal oxidase [Chlamydomonas reinhardtii]
 gi|158280390|gb|EDP06148.1| plastid terminal oxidase [Chlamydomonas reinhardtii]
          Length = 416

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 75/172 (43%), Gaps = 26/172 (15%)

Query: 152 MLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKAL-LEEAENERMHLMTMVELVKPK-WY 209
           +LETVA +P      +LHL     F  +G  ++ +   E  NE  HL  M  L   + W+
Sbjct: 219 VLETVARIPYFAYISILHLYESLGFWRAGAELRKIHFAEEWNEMHHLQIMESLGGDRAWF 278

Query: 210 ERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAP 269
           +R +       ++      YL+SP++A+  +  +E  A  +Y+ +++  +  ++ ++P P
Sbjct: 279 DRFIAEHAAVFYYWVLIAFYLVSPRMAYNFMQRVELHAADTYSAFVER-NRTALADIPPP 337

Query: 270 AIAIDYW-----------------------RLPKDATLKDVITVIRADEAHH 298
            +A+ Y+                       R P    L DV T IR DE  H
Sbjct: 338 LVALQYYYSDDLYLFDEFQTASRGAPGVPPRRPPCENLLDVFTNIRDDELEH 389


>gi|452821392|gb|EME28423.1| plastid terminal oxidase [Galdieria sulphuraria]
          Length = 378

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 68/148 (45%), Gaps = 4/148 (2%)

Query: 149 RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELV-KPK 207
           R   LETVA +P      +LHL     +  +G  +K    E  NE  HL+ M  L    K
Sbjct: 198 RFWFLETVARMPYFSYISVLHLYETLGWWRNGELLKIHFAEEYNEFHHLLIMESLGGDRK 257

Query: 208 WYERMLVLTVQGVFFNAFFVLYL-LSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENV 266
           W +R  V     VF+    VLY  LSP LA+     +E  A+ +YTE+L+  +   ++ +
Sbjct: 258 WLDR-FVAEHAAVFYYWILVLYFFLSPSLAYNFSELVEAHAVDTYTEFLQ-TNEELLKQL 315

Query: 267 PAPAIAIDYWRLPKDATLKDVITVIRAD 294
           P P IA  Y+         ++I  +  D
Sbjct: 316 PPPKIAERYYLADNLYMFDEIILQVLGD 343


>gi|219124647|ref|XP_002182610.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405956|gb|EEC45897.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 314

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 75/182 (41%), Gaps = 29/182 (15%)

Query: 145 RYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELV 204
           R   R   LET+A +P      +LHL           +++    E+ NE  HL+ M EL 
Sbjct: 122 RAFARFYALETIARMPYFSYLSVLHLWETLGMWRRAEYLQVHFAESWNELHHLLIMEELG 181

Query: 205 -KPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI 263
              +W +R +   +   ++     LY ++P +A+ +   +EEEA  +Y  +L+   +  +
Sbjct: 182 GNGRWGDRFVAQHIAFFYYWIVVTLYAVNPTMAYNLNQAVEEEAYETYDGFLQ-THAEYL 240

Query: 264 ENVPAPAIAIDYW---------------------------RLPKDATLKDVITVIRADEA 296
           ++ PAP  AI Y+                           R P   TL D I  IR DE 
Sbjct: 241 QSQPAPQAAIRYYTGDDLYLFHAMHWDTRQPKEPESPVEQRRPTCETLYDTIRNIRDDEL 300

Query: 297 HH 298
            H
Sbjct: 301 EH 302


>gi|168049162|ref|XP_001777033.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671598|gb|EDQ58147.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 212

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 75/181 (41%), Gaps = 22/181 (12%)

Query: 139 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKAL-LEEAENERMHL 197
           D+ F  R   R   LETVA +P      +LHL     +   G  ++ +   E  NE  HL
Sbjct: 3   DVIFNDRPIQRFWFLETVARMPYFSYISMLHLYETLGWWRIGAEVRKVHFAEEWNEMHHL 62

Query: 198 MTMVELVKP-KWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLK 256
             M  L    +W +R         ++    +++L+SPK+A+     +E  A+ +Y E+  
Sbjct: 63  RIMESLGGDLEWGDRFFAQHAAFFYYWVLNLMFLISPKVAYNFSELIEMHAVDTYGEF-A 121

Query: 257 DIDSGSIENVPAPAIAIDYW-------------------RLPKDATLKDVITVIRADEAH 297
           D +   ++ +P P  A++Y+                   R PK   L DV   I  DE  
Sbjct: 122 DANEELLKTLPPPPAALEYYESEDLYMYDEFQTSQAPETRRPKINNLYDVFKAISGDELE 181

Query: 298 H 298
           H
Sbjct: 182 H 182


>gi|146104475|ref|XP_001469836.1| putative alternative oxidase [Leishmania infantum JPCM5]
 gi|398024826|ref|XP_003865574.1| alternative oxidase, putative [Leishmania donovani]
 gi|134074206|emb|CAM72948.1| putative alternative oxidase [Leishmania infantum JPCM5]
 gi|322503811|emb|CBZ38897.1| alternative oxidase, putative [Leishmania donovani]
          Length = 486

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 52/96 (54%)

Query: 183 IKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGY 242
           ++ LL + E+  +H   +  + +    ER LVL +Q V F  +  L+LL P++  R++ Y
Sbjct: 239 LRGLLAQCESHAVHYQVLSCMAEITLLERGLVLLLQAVHFTIYLALFLLYPRMGFRLMAY 298

Query: 243 LEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRL 278
             EE+   +T+ + D+D G I     P +A+ YW L
Sbjct: 299 TAEESSVVWTQMVNDVDLGKIAEPRVPQLALHYWGL 334


>gi|412985307|emb|CCO20332.1| predicted protein [Bathycoccus prasinos]
          Length = 394

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 78/164 (47%), Gaps = 7/164 (4%)

Query: 149 RAMMLETVAAVPGMVGGMLLHLKSLRKF-QHSGGWIKALLEEAENERMHLMTMVELVKPK 207
           R   LETVA +P      +L L  L  + + S    K    E  NE  HL+ M  L   +
Sbjct: 123 RFWFLETVARMPYFSYTTMLTLYELLGWWRRSSELRKVHFAEEWNEYHHLLIMESLGGDR 182

Query: 208 -WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENV 266
            W +R L      V++    V++LLSPKLA+     +E  A+ +Y ++ ++ +   +E++
Sbjct: 183 RWSDRFLAQHAALVYYFGLVVVWLLSPKLAYNFSEKIETHAVATYAQFTEE-NKELLESL 241

Query: 267 PAPAIAIDYWRLPKDATLKD---VITVIRADEAHHRDVNHFASD 307
           PAP +A  Y+   +D  L D     T++   E     +N  +SD
Sbjct: 242 PAPEVAKKYYE-AEDLYLFDEFQTTTMLNTGEIVSLKLNSRSSD 284


>gi|384251652|gb|EIE25129.1| hypothetical protein COCSUDRAFT_46597 [Coccomyxa subellipsoidea
           C-169]
          Length = 487

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 84/203 (41%), Gaps = 25/203 (12%)

Query: 117 HVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKF 176
           H    F+  VAY T   L +  D+ + +R   R   LE VA +P      +LHL     +
Sbjct: 228 HAKAPFIINVAYTT---LCVVMDVLYNKRPIQRFWFLEVVARMPYFSYISMLHLYESLGW 284

Query: 177 QHSGGWIKAL-LEEAENERMHLMTMVELVKPK-WYERMLVLTVQGVFFNAFFVLYLLSPK 234
             +G  ++ +   E  NE  HL  M  L   + W +R         ++      +  SP+
Sbjct: 285 WRAGAELRRIHFAEEWNELHHLQIMESLGGDQFWIDRFAAQHAAVFYYWVIVGFFAFSPQ 344

Query: 235 LAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYW------------------ 276
           LA+     +E  A+ +Y E++++ ++  ++ +P P +A++Y+                  
Sbjct: 345 LAYVFSELVEGHAVDTYEEFVEE-NAELLKTLPPPVVALEYYKNGDLYLFDELQTTGTDP 403

Query: 277 -RLPKDATLKDVITVIRADEAHH 298
            R P    L DV   I  DE  H
Sbjct: 404 KRRPSCNNLYDVFCNIAGDEREH 426


>gi|298709084|emb|CBJ31032.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 259

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 16/162 (9%)

Query: 120 TTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHL-KSLRKFQH 178
             F++      V  L+     ++  R   R   LET+A VP      +LHL ++L K++ 
Sbjct: 79  NAFMNDFNAGVVDFLKGLMVQYYGERTYARFYALETIARVPYFGYLCVLHLYETLGKWRQ 138

Query: 179 SGGWIKALLEEAENERMHLMTMVE-----LVKPKWYERMLVLTVQGVFFNAFFV--LYLL 231
           +  ++K    E+ NE  HL+ M E     L + +W+ +         FF  F V  LYL 
Sbjct: 139 AE-YLKVHFAESYNELHHLLIMEELGGNVLFRDRWFAQ------HAAFFYFFVVVGLYLS 191

Query: 232 SPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAI 273
           +P+ A+ +  ++EE A  +Y  +L D +  +++  PAP  ++
Sbjct: 192 NPRNAYNLNQHVEEHAFSTYDSFLSD-NQEALKQQPAPEASL 232


>gi|157877409|ref|XP_001687022.1| putative alternative oxidase [Leishmania major strain Friedlin]
 gi|68130097|emb|CAJ09405.1| putative alternative oxidase [Leishmania major strain Friedlin]
          Length = 493

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 11/120 (9%)

Query: 183 IKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGY 242
           ++ LL + E+  +H   +  + +    ER LVL +Q V F  +  L+L  P++  R++ Y
Sbjct: 246 LRGLLAQCESHAVHYQVLSCMAEITLLERSLVLLLQAVHFTIYLALFLFYPRMGFRLMAY 305

Query: 243 LEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRL-----------PKDATLKDVITVI 291
             EE+   +T+ + D+D G I     P +A+ YW L           PK  TL++   V+
Sbjct: 306 AAEESSVVWTQMVNDVDLGKIAEPRVPQLALHYWGLEGVFTAQAAPPPKTVTLQEQEAVL 365


>gi|401420614|ref|XP_003874796.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
 gi|322491032|emb|CBZ26296.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 484

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 51/96 (53%)

Query: 183 IKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGY 242
           ++ LL + E+  +H   +  + +    ER LVL +Q V F  +  L+L  P++  R++ Y
Sbjct: 237 LRGLLAQCESHAVHYQVLSCMAEITLLERGLVLLLQAVHFTIYLALFLFYPRMGFRLMAY 296

Query: 243 LEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRL 278
             EE+   +T+ + D+D G I     P +A+ YW L
Sbjct: 297 TAEESSVVWTQMVNDVDLGKIAEPRVPQLALHYWGL 332


>gi|159468876|ref|XP_001692600.1| alternative oxidase [Chlamydomonas reinhardtii]
 gi|158278313|gb|EDP04078.1| alternative oxidase [Chlamydomonas reinhardtii]
          Length = 471

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 23/172 (13%)

Query: 149 RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKAL-LEEAENERMHLMTMVELVKPK 207
           R   LETVA +P      +LHL     +  +G  ++ +   E  NE  HL  M  L   +
Sbjct: 273 RFWFLETVARMPYFSYISMLHLYESLGWWRAGAELRKIHFAEEWNELHHLQIMESLGGDQ 332

Query: 208 -WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENV 266
            W++R        +++     LY+ SP+LA+     +E  A+ +Y E++ D +   ++++
Sbjct: 333 LWFDRFAAQHAAILYYWILLGLYVFSPRLAYNFSELIEYHAVDTYGEFV-DANEELLKSL 391

Query: 267 PAPAIAIDYW--------------------RLPKDATLKDVITVIRADEAHH 298
           P P +A  Y+                    R P   TL DV   I  DE  H
Sbjct: 392 PPPLVAAVYYRSQDLYMFDSFQTSQPMQNPRRPSCKTLYDVFKNICDDEMEH 443


>gi|224014510|ref|XP_002296917.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220968297|gb|EED86645.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 636

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 95/227 (41%), Gaps = 42/227 (18%)

Query: 102 WETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYG-CRAMMLETVAAVP 160
           WE  RA       +  V   ++ K+ Y  +  +    D+ F+ R    R  +LETVA +P
Sbjct: 262 WERERA-------RGEVVAPYIIKIPYYALCFM---LDVVFEGRNPFSRFFLLETVARMP 311

Query: 161 GMVGGMLLHLKSLRKFQHSGGWIKAL-LEEAENERMHLMTMVELV--KPKWYERMLVLTV 217
                 +LHL     F      IK +   E  NE  HL+ M  L   +P W  R++    
Sbjct: 312 YFSYITMLHLYETMGFWRRSSDIKRIHFAEEWNEFHHLLIMESLGGDQPYWV-RLMAQHS 370

Query: 218 QGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYW- 276
              ++ A  +L++LSP L+++    LE  A+ +Y +++ D +   ++ +P    A++Y+ 
Sbjct: 371 ALAYYIALCMLWMLSPTLSYKFSEMLETHAVDTYGQFV-DENEDKLKELPPSIAAVEYYT 429

Query: 277 -----------------------RLPKDA--TLKDVITVIRADEAHH 298
                                  R+P     +L DV   IR DE  H
Sbjct: 430 VGVSDPMFGEYQTASVSDPNRRVRVPGTNLRSLYDVFVAIRNDEGDH 476


>gi|255086827|ref|XP_002509380.1| quinol-to-oxygen oxidoreductase [Micromonas sp. RCC299]
 gi|226524658|gb|ACO70638.1| quinol-to-oxygen oxidoreductase [Micromonas sp. RCC299]
          Length = 472

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 85/206 (41%), Gaps = 26/206 (12%)

Query: 115 KHHVPTTFLDKVAYRTVKLLRIPTDLFF-QRRYGCRAMMLETVAAVPGMVGGMLLHLKSL 173
           +  VP  ++ K  Y  + +     DL F + R   R   LETVA +P      +L +  L
Sbjct: 195 RPEVPAPWIIKAPYLALCVF---LDLVFPENRPIQRFWFLETVARMPYFSYNTMLTVYEL 251

Query: 174 RKF-QHSGGWIKALLEEAENERMHLMTMVELV-KPKWYERMLVLTVQGVFFNAFFVLYLL 231
             + + S    +    E  NE  HL+    L     W +R L      +++ A  V +LL
Sbjct: 252 LGWWRRSSELRRVHFAEEWNEYHHLLIHESLGGDAAWRDRFLGFHSALLYYGALNVAWLL 311

Query: 232 SPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWR-------------- 277
           SP LA+     +E  A+ +Y ++ ++ +  ++  +PAP IA  Y+               
Sbjct: 312 SPALAYNFSELIEAHAVDTYAQFAEE-NKATLRKLPAPRIARKYYEEGDLYLFDEFQTAR 370

Query: 278 -----LPKDATLKDVITVIRADEAHH 298
                  +  TL D    IR DEA H
Sbjct: 371 PRSSRRVRVTTLYDAFCAIRDDEAEH 396


>gi|20149254|gb|AAM12876.1|AF494290_1 quinol-to-oxygen oxidoreductase [Chlamydomonas reinhardtii]
          Length = 471

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 23/172 (13%)

Query: 149 RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKAL-LEEAENERMHLMTMVELVKPK 207
           R   LETVA +P      +LHL     +  +G  ++ +   E  NE  HL  M  L   +
Sbjct: 273 RFWFLETVARMPYFSYISMLHLYESLGWWRAGAELRKIHFAEEWNELHHLQIMESLGGDQ 332

Query: 208 -WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENV 266
            W++R        +++     LY+ SP+LA+     +E  A+ +Y E+  D +   ++++
Sbjct: 333 LWFDRFAAQHAAILYYWILLGLYVFSPRLAYNFSELIEYHAVDTYGEFW-DANEELLKSL 391

Query: 267 PAPAIAIDYW--------------------RLPKDATLKDVITVIRADEAHH 298
           P P +A  Y+                    R P   TL DV   I  DE  H
Sbjct: 392 PPPLVAAVYYRSQDLYMFDSFQTSQPMQNPRRPSCKTLYDVFKNICDDEMEH 443


>gi|307109996|gb|EFN58233.1| hypothetical protein CHLNCDRAFT_12129, partial [Chlorella
           variabilis]
          Length = 216

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 77/187 (41%), Gaps = 38/187 (20%)

Query: 149 RAMMLETVAAVPGMVGGMLLHL----------KSLRKFQHSG-----GWIKALLEEAENE 193
           R  +LETVA +P  V   +LHL            LRK + S      G +     E  NE
Sbjct: 23  RFWILETVARMPYFVYISMLHLYESLGWWRAGAELRKARRSSRAELSGSLHVHFAEEWNE 82

Query: 194 RMHLMTMVELVKP-KWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYT 252
             HL  M  L    +W +R L       ++ A  ++YL+SP  +++ +  +E  A  +Y 
Sbjct: 83  LHHLQIMEALGGDLRWGDRFLAEHAAVFYYWALVLIYLISPAASYQFMEMVEGHAADTYA 142

Query: 253 EYLKDIDSGSIENVPAPAIAIDYW---------------------RLPKDATLKDVITVI 291
           E+ +  +   ++ +P P +A+ Y+                     R P+   L DV   I
Sbjct: 143 EFAEQ-NRERLQAIPPPLVALAYYKSGDLYLFDQFQTSWKAAGELRRPRCNNLYDVFINI 201

Query: 292 RADEAHH 298
           R DE  H
Sbjct: 202 RDDELEH 208


>gi|149190030|ref|ZP_01868308.1| alternative oxidase [Vibrio shilonii AK1]
 gi|148836196|gb|EDL53155.1| alternative oxidase [Vibrio shilonii AK1]
          Length = 57

 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/42 (52%), Positives = 31/42 (73%)

Query: 124 DKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGG 165
           +KVA    KLL+   +LF+ ++Y  RA++LET+AAVPGMV G
Sbjct: 16  EKVALSVTKLLKYVLNLFYGKKYDKRAVILETIAAVPGMVAG 57


>gi|323455003|gb|EGB10872.1| hypothetical protein AURANDRAFT_14460, partial [Aureococcus
           anophagefferens]
          Length = 199

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 73/157 (46%), Gaps = 5/157 (3%)

Query: 139 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGW--IKALLEEAENERMH 196
           D  ++ R   R  +LET+A VP      ++HL+     +  G    ++    EA+NE  H
Sbjct: 10  DALYEGRDFARFYVLETLARVPYFAYLSVMHLRETFGDRRPGDSERMRTHYAEADNELHH 69

Query: 197 LMTMVELV-KPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYL 255
           L+ M  L       +R L  ++   +F    V+Y  S   A+ +   +E+ A ++Y +++
Sbjct: 70  LLIMESLGGNSSAVDRTLAQSMAFFYFWYVTVVYSFSEPAAYHLSELIEDHAFNTYDDFI 129

Query: 256 KDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIR 292
           KD     ++ +P P IA  Y+    D  L+D    ++
Sbjct: 130 KD-HGPKLKGMPVPDIARKYYER-DDPYLRDQFLTVK 164


>gi|397605676|gb|EJK59088.1| hypothetical protein THAOC_20735 [Thalassiosira oceanica]
          Length = 695

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 74/144 (51%), Gaps = 6/144 (4%)

Query: 139 DLFFQRRYG-CRAMMLETVAAVPGMVGGMLLHL-KSLRKFQHSGGWIKALLEEAENERMH 196
           D+ F+ R    R  +LETVA +P      +LHL +SL  ++ S    +    E  NE  H
Sbjct: 360 DVVFEGRNAFSRFFLLETVARMPYFSYITMLHLYESLGFWRRSSDIKRIHFAEEWNEFHH 419

Query: 197 LMTMVELV--KPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEY 254
           L+ M  +   +P W  R L       ++ A  +L++ SP L+++    LE  A+ +Y ++
Sbjct: 420 LLIMESMGGDQPYWV-RFLAQHSAVAYYVALCLLWIASPSLSYKFSEMLETHAVDTYGQF 478

Query: 255 LKDIDSGSIENVPAPAIAIDYWRL 278
           + + +S  ++ +P   +A++Y+ +
Sbjct: 479 VDENES-KLKELPPSLVAVEYYTI 501


>gi|302819116|ref|XP_002991229.1| hypothetical protein SELMODRAFT_429569 [Selaginella moellendorffii]
 gi|300140940|gb|EFJ07657.1| hypothetical protein SELMODRAFT_429569 [Selaginella moellendorffii]
          Length = 232

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 78  YWGISRPKITREDGSPWPWNCFMPWET--YRADLSIDLKKHHVPTTFLDKVAYRTVKLLR 135
           YWG+   K    D     WN F P E     A++SID+ KH  P  F D+ A   V  LR
Sbjct: 160 YWGVCFGKPN--DVGSKIWNSFWPSENRIIEAEVSIDINKHRNPENFSDQFARLAVMALR 217

Query: 136 IPTDLFFQ 143
            PTDL F+
Sbjct: 218 FPTDLLFR 225


>gi|303284193|ref|XP_003061387.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456717|gb|EEH54017.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 240

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 77/200 (38%), Gaps = 36/200 (18%)

Query: 120 TTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHS 179
            TFLD V          P D   QR +      LE+VA +P      +L L  L  +   
Sbjct: 38  CTFLDLV---------FPEDRPIQRFW-----FLESVARMPYFSYNTMLTLYELLGWWRR 83

Query: 180 GGWIKAL-LEEAENERMHLMTMVELV-KPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAH 237
              ++ +   E  NE  HL+ M  L     W +R L       ++     L+L+SP LA+
Sbjct: 84  SSELRRVHFAEEWNEYHHLLIMESLGGDALWRDRFLAQHAALAYYLVLIALWLISPALAY 143

Query: 238 RVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWR-------------------L 278
                +E  A+ +Y ++  D +   +  +PAP IA  Y+                     
Sbjct: 144 NFSELIEAHAVDTYAQF-ADENKEKLRTLPAPRIARAYYENDDMYLFDEFQTARPRSSRR 202

Query: 279 PKDATLKDVITVIRADEAHH 298
           P+  TL D    IR DE  H
Sbjct: 203 PRVRTLHDTFCAIRDDENEH 222


>gi|428168785|gb|EKX37726.1| centrin/plastid terminal oxidase fusion protein [Guillardia theta
           CCMP2712]
          Length = 1019

 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 79/186 (42%), Gaps = 32/186 (17%)

Query: 139 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKAL------LEEAEN 192
           D+ F  R   R   LETVA +P        ++  L  ++  G W  ++        E  N
Sbjct: 769 DVLFVNRPIQRFWFLETVARMP-----YFSYITMLTLYESLGWWRSSMDSRRVHFAEEWN 823

Query: 193 ERMHLMTMVELVKPK-WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSY 251
           E  HL  M  L   + W++R +       +F     ++LLSP LA+     +E  A+ +Y
Sbjct: 824 EVQHLKIMEALGGDRSWFDRFMGRHAAIFYFIILNHIWLLSPSLAYNFSELIEFHAVDTY 883

Query: 252 TEYLKDIDSGSIENVPAPAIAIDYW--------------RLPKD-----ATLKDVITVIR 292
            E++ D +   ++++P P  A++Y+              R PK       +L DV   IR
Sbjct: 884 GEFV-DANEELLKSLPPPQEAVEYYNSKDLYLFDEFQTGRTPKSRRPVIRSLYDVFCNIR 942

Query: 293 ADEAHH 298
            DE  H
Sbjct: 943 DDELEH 948


>gi|323456443|gb|EGB12310.1| hypothetical protein AURANDRAFT_20495 [Aureococcus anophagefferens]
          Length = 242

 Score = 45.1 bits (105), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 65/150 (43%), Gaps = 4/150 (2%)

Query: 148 CRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGW--IKALLEEAENERMHLMTMVELV- 204
            R  +LETVA VP      ++HL+     +  G    ++    EA+NE  HL+ M  L  
Sbjct: 34  ARFYVLETVARVPYFAYLSVMHLRETFGDRDPGDSERMRTHYAEADNELHHLLIMESLGG 93

Query: 205 KPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIE 264
                +R L  T+   ++    V+Y  S   A+ +   +E+ A ++Y  +L+D     ++
Sbjct: 94  NSSAVDRTLAQTMAFFYYWYVTVVYSFSEPAAYHLSELIEDHAFNTYDGFLRD-HGPKLK 152

Query: 265 NVPAPAIAIDYWRLPKDATLKDVITVIRAD 294
            +P P IA  Y+            TV   D
Sbjct: 153 GMPVPDIARKYYERDDPFLFDQFCTVKEPD 182


>gi|302782501|ref|XP_002973024.1| hypothetical protein SELMODRAFT_98486 [Selaginella moellendorffii]
 gi|300159625|gb|EFJ26245.1| hypothetical protein SELMODRAFT_98486 [Selaginella moellendorffii]
          Length = 255

 Score = 45.1 bits (105), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 74/181 (40%), Gaps = 22/181 (12%)

Query: 139 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKAL-LEEAENERMHL 197
           D+ F+ R   R   LETVA +P      +LHL     +   G  ++ +   E  NE  HL
Sbjct: 53  DVIFEGRPIQRFWFLETVARMPYFSYISMLHLYETLGWWRVGADVRKVHFAEEWNEMHHL 112

Query: 198 MTMVELVKP-KWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLK 256
             M  L     W +R         ++     ++ +SPK+A+     +E  A+ +Y +++ 
Sbjct: 113 KIMESLGGDLLWGDRFFGQHAAFFYYWILNFMFFVSPKVAYNFSELIEMHAVDTYGQFV- 171

Query: 257 DIDSGSIENVPAPAIAIDYW-------------------RLPKDATLKDVITVIRADEAH 297
           D +   ++ +P    A+ Y+                   R PK  +L DV   I+ DE  
Sbjct: 172 DENEELLKQLPPSPEAVAYYENEDLYMFDEFQTSRAPESRRPKVDSLYDVFVAIKGDEFE 231

Query: 298 H 298
           H
Sbjct: 232 H 232


>gi|302805482|ref|XP_002984492.1| hypothetical protein SELMODRAFT_120335 [Selaginella moellendorffii]
 gi|300147880|gb|EFJ14542.1| hypothetical protein SELMODRAFT_120335 [Selaginella moellendorffii]
          Length = 255

 Score = 45.1 bits (105), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 73/181 (40%), Gaps = 22/181 (12%)

Query: 139 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKAL-LEEAENERMHL 197
           D+ F+ R   R   LETVA +P      +LHL     +   G  ++ +   E  NE  HL
Sbjct: 53  DVIFEGRPIQRFWFLETVARMPYFSYISMLHLYETLGWWRVGADVRKVHFAEEWNEMHHL 112

Query: 198 MTMVELVKP-KWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLK 256
             M  L     W +R         ++     ++ +SPK+A+     +E  A+ +Y ++  
Sbjct: 113 KIMESLGGDLLWGDRFFGQHAAFFYYWILNFMFFVSPKVAYNFSELIEMHAVDTYGQFF- 171

Query: 257 DIDSGSIENVPAPAIAIDYW-------------------RLPKDATLKDVITVIRADEAH 297
           D +   ++ +P    A+ Y+                   R PK  +L DV   I+ DE  
Sbjct: 172 DENEELLKQLPPSPEAVAYYENEDLYMFDEFQTSRAPESRRPKVDSLYDVFVAIKGDEFE 231

Query: 298 H 298
           H
Sbjct: 232 H 232


>gi|33860894|ref|NP_892455.1| plastoquinol terminal oxidase [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33633836|emb|CAE18795.1| conserved hypothetical [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
          Length = 169

 Score = 44.7 bits (104), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 7/131 (5%)

Query: 130 TVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQH--SGGWIKALL 187
           TVK+L    D  +  R+  R  +LE +A  P      +LH K     ++  +   +K   
Sbjct: 12  TVKIL----DFVYSDRHLQRFWVLEVIARSPYFAFLSVLHFKESLGLKNDITMFLMKEHF 67

Query: 188 EEAENERMHLMTMVELVKPK-WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEE 246
            +A NE  HL  M +    K W +R L   +  V++      Y  SP+ A+ V   +EE 
Sbjct: 68  YQAINETEHLKEMEKRGGDKFWIDRFLARHLVLVYYWIMVFYYFCSPRNAYDVNIKIEEH 127

Query: 247 AIHSYTEYLKD 257
           A ++YT+YLKD
Sbjct: 128 AFNTYTKYLKD 138


>gi|14595199|gb|AAK70807.1| oxidase [Oryza sativa]
          Length = 158

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 26/102 (25%)

Query: 222 FNAFF------VLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDY 275
           F AFF       +Y++SP++A+     +E  A  +Y +++K +    ++ +PAP  A++Y
Sbjct: 7   FAAFFYYFMTVAMYMVSPRMAYHFSECVERHAYSTYDKFIK-LHEDELKKLPAPEAALNY 65

Query: 276 W-------------------RLPKDATLKDVITVIRADEAHH 298
           +                   R PK   L DV   IR DEA H
Sbjct: 66  YLNEDLYLFDEFQTARVPCSRRPKIDNLYDVFVNIRDDEAEH 107


>gi|302760829|ref|XP_002963837.1| hypothetical protein SELMODRAFT_405292 [Selaginella moellendorffii]
 gi|300169105|gb|EFJ35708.1| hypothetical protein SELMODRAFT_405292 [Selaginella moellendorffii]
          Length = 290

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 20/37 (54%), Positives = 29/37 (78%), Gaps = 5/37 (13%)

Query: 166 MLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVE 202
           MLLH +SLR+F+ SGG      EEAE+ER+++MT+V+
Sbjct: 211 MLLHCRSLRRFEQSGG-----AEEAESERVYVMTVVQ 242


>gi|347837920|emb|CCD52492.1| hypothetical protein [Botryotinia fuckeliana]
          Length = 1497

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 65/153 (42%), Gaps = 19/153 (12%)

Query: 39  DMPLLGLRMMVMMSSYSS----SSESVPEKVKEKGENGIVPSSYWGISRPKITREDGSPW 94
           D PL   R + M S +S+    +++  P + K   +  +  SS+  +S P      GS  
Sbjct: 9   DDPLKAKRSIGMKSIWSNMKKGTAKQDPNQKKLSAQQIVSDSSFAAVSPPSQDSMKGSTN 68

Query: 95  PWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDL-FFQRRYGCRAMML 153
             +CF     Y    SI ++KH       +  A R+     +PTD+  FQ          
Sbjct: 69  --SCFSDLTNYIPAGSIRIQKHECSLLREETFACRSWHAFHLPTDINNFQ---------- 116

Query: 154 ETVAAVPGMVGGMLLHLKSLRKFQ--HSGGWIK 184
           +++  +P  V G LL   +L K+   H  GWI+
Sbjct: 117 QSILYLPNTVQGQLLRSAALVKYTGIHDAGWIR 149


>gi|298492297|ref|YP_003722474.1| alternative oxidase ['Nostoc azollae' 0708]
 gi|298234215|gb|ADI65351.1| alternative oxidase ['Nostoc azollae' 0708]
          Length = 164

 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 8/137 (5%)

Query: 149 RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKW 208
           R  +LETV  VP      + HL     F      +K    E+ NE  HL+ M  L   + 
Sbjct: 24  RFYVLETVERVPYFSYLSISHLYGTLGFCRRADGLKVDFAESWNELHHLLMMESLEGSQL 83

Query: 209 Y-ERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVP 267
             +R+L  T   +++     LY++SP  A+  +  +E  A +SY ++L + ++  ++  P
Sbjct: 84  SGDRILARTTVLLYYWIIVALYIVSPGSAYHFMELVESHAYNSYQKFLTEYET-ELKLEP 142

Query: 268 APAIAIDYWRLPKDATL 284
            PA       LP+  TL
Sbjct: 143 TPA------NLPRKQTL 153


>gi|397630744|gb|EJK69894.1| hypothetical protein THAOC_08807, partial [Thalassiosira oceanica]
          Length = 104

 Score = 41.6 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 9/68 (13%)

Query: 108 DLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYG--------CRAMMLETVAAV 159
           DL I+L  H  P TFLD+ A   VK +R   D+      G         RA+ LET+AAV
Sbjct: 37  DLDINLT-HVKPKTFLDRSALFAVKCVRTVFDIGTGWNRGEITTDKILNRAIFLETIAAV 95

Query: 160 PGMVGGML 167
           PGMV  ++
Sbjct: 96  PGMVAAVI 103


>gi|238576406|ref|XP_002388025.1| hypothetical protein MPER_13010 [Moniliophthora perniciosa FA553]
 gi|215448966|gb|EEB88955.1| hypothetical protein MPER_13010 [Moniliophthora perniciosa FA553]
          Length = 57

 Score = 41.2 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 18/22 (81%), Positives = 18/22 (81%)

Query: 267 PAPAIAIDYWRLPKDATLKDVI 288
           PAP IAIDYWRLP DA L DVI
Sbjct: 1   PAPKIAIDYWRLPADAKLLDVI 22


>gi|154311134|ref|XP_001554897.1| hypothetical protein BC1G_06685 [Botryotinia fuckeliana B05.10]
          Length = 875

 Score = 40.8 bits (94), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 65/153 (42%), Gaps = 19/153 (12%)

Query: 39  DMPLLGLRMMVMMSSYSS----SSESVPEKVKEKGENGIVPSSYWGISRPKITREDGSPW 94
           D PL   R + M S +S+    +++  P + K   +  +  SS+  +S P      GS  
Sbjct: 9   DDPLKAKRSIGMKSIWSNMKKGTAKQDPNQKKLSAQQIVSDSSFAVVSPPSQDSMKGSTN 68

Query: 95  PWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDL-FFQRRYGCRAMML 153
             +CF     Y    SI ++KH       +  A R+     +PTD+  FQ          
Sbjct: 69  --SCFSDLTNYIPAGSIRIQKHECSLLKEEAFACRSWHAFHLPTDMNNFQ---------- 116

Query: 154 ETVAAVPGMVGGMLLHLKSLRKFQ--HSGGWIK 184
           +++  +P  V G LL   +L K+   H  GWI+
Sbjct: 117 QSILYLPNTVQGQLLRSAALVKYTGIHDAGWIR 149


>gi|388491666|gb|AFK33899.1| unknown [Lotus japonicus]
          Length = 50

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/17 (88%), Positives = 17/17 (100%)

Query: 290 VIRADEAHHRDVNHFAS 306
           V+RA+EAHHRDVNHFAS
Sbjct: 2   VVRANEAHHRDVNHFAS 18


>gi|326496132|dbj|BAJ90687.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 252

 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 13/104 (12%)

Query: 139 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLM 198
           D+ ++ R   R  +LET+A VP      +LHL     +      IK    E+ NE  HL+
Sbjct: 130 DILYRDRDYARFFVLETIARVPYFAFISVLHLYETFGWSRRADNIKVHFAESMNEFHHLL 189

Query: 199 TMVEL-VKPKWYERMLVLTVQGVFFNAFF------VLYLLSPKL 235
            M  L     W +R L        F+AFF       +Y+LSP++
Sbjct: 190 IMEALGGNSVWIDRFLAR------FSAFFYYFVTVAMYMLSPRM 227


>gi|116070947|ref|ZP_01468216.1| plastoquinol terminal oxidase [Synechococcus sp. BL107]
 gi|116066352|gb|EAU72109.1| plastoquinol terminal oxidase [Synechococcus sp. BL107]
          Length = 210

 Score = 38.5 bits (88), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 11/105 (10%)

Query: 208 WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVP 267
           W +R L   +  + + AF +  L+  +LA  +   +E EA+ +Y   L +  S    N P
Sbjct: 100 WGDRFLARHIAVIIYWAFAITTLIDHELAALLGEAVEVEAVATYKRMLVE-QSDEWLNQP 158

Query: 268 APAIAIDYWRLPKDA----------TLKDVITVIRADEAHHRDVN 302
           A   A+ YW  P             +++DV+  I  DEA H   N
Sbjct: 159 AVPTAVRYWNKPNSMWKVRGDNQPMSMRDVVEAIVKDEADHVHAN 203


>gi|145473733|ref|XP_001462530.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124430370|emb|CAK95157.1| unnamed protein product [Paramecium tetraurelia]
          Length = 141

 Score = 38.5 bits (88), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 9/96 (9%)

Query: 153 LETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMH-LMTMVELVKPKW--- 208
           LET+     +   +  H  SL++ Q SGGWIK  LEE E +    L+T ++ V+ K+   
Sbjct: 18  LETIGLRHKLSQIIQEHQSSLQEKQMSGGWIKQPLEEFEQQNNSILITSLDAVEAKYNLS 77

Query: 209 -----YERMLVLTVQGVFFNAFFVLYLLSPKLAHRV 239
                YE++L +T Q V    + VL   +   A R+
Sbjct: 78  KDGYEYEKLLQVTTQVVAGINYKVLVQYAKDDAKRI 113


>gi|78778726|ref|YP_396838.1| plastoquinol terminal oxidase [Prochlorococcus marinus str. MIT
           9312]
 gi|78712225|gb|ABB49402.1| plastoquinol oxidase immutans [Prochlorococcus marinus str. MIT
           9312]
          Length = 169

 Score = 38.5 bits (88), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 56/131 (42%), Gaps = 7/131 (5%)

Query: 130 TVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGG--WIKALL 187
           TV LL    D  +  R   R  +LE +A  P      +LH K     ++      +K   
Sbjct: 12  TVNLL----DFIYSGRNLQRFWVLEVIARSPYFAFLSVLHFKESLGIKNDKTMFLMKEHF 67

Query: 188 EEAENERMHLMTMVELVKPK-WYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEE 246
            +A NE  HL  M +    K W +R     +  V++      Y  SP  A+ V   +EE 
Sbjct: 68  YQAINETEHLKEMEKRGGDKFWIDRFFARHLVLVYYWIMVFYYFFSPANAYDVNIKIEEH 127

Query: 247 AIHSYTEYLKD 257
           A  +Y++YLKD
Sbjct: 128 AFKTYSKYLKD 138


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.322    0.137    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,263,465,892
Number of Sequences: 23463169
Number of extensions: 222881855
Number of successful extensions: 458368
Number of sequences better than 100.0: 723
Number of HSP's better than 100.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 111
Number of HSP's that attempted gapping in prelim test: 457029
Number of HSP's gapped (non-prelim): 782
length of query: 325
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 183
effective length of database: 9,027,425,369
effective search space: 1652018842527
effective search space used: 1652018842527
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 77 (34.3 bits)