BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020532
         (325 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3P6A|A Chain A, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
           (R399e Mutant)
 pdb|3P6A|B Chain B, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
           (R399e Mutant)
          Length = 377

 Score = 28.1 bits (61), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 5/96 (5%)

Query: 92  SPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAM 151
           SP  W   +P +T  +     +K+  V +  L   A   V++LR+  DLFFQ    C   
Sbjct: 5   SPPGWEELVPPDTLHSLPKSQVKRQEVISELLVTEAAH-VRMLRVLHDLFFQPMAECLFF 63

Query: 152 MLETVAAV-PGMVGGMLLH---LKSLRKFQHSGGWI 183
            LE +  + P +   + +H   L  L K +   G++
Sbjct: 64  PLEELQNIFPSLDELIEVHSLFLDRLMKRRQESGYL 99


>pdb|3ODO|A Chain A, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
 pdb|3ODO|B Chain B, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
          Length = 375

 Score = 27.7 bits (60), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 5/96 (5%)

Query: 92  SPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAM 151
           SP  W   +P +T  +     +K+  V +  L   A   V++LR+  DLFFQ    C   
Sbjct: 3   SPPGWRELVPPDTLHSLPKSQVKRQEVISELLVTEAAH-VRMLRVLHDLFFQPMAECLFF 61

Query: 152 MLETVAAV-PGMVGGMLLH---LKSLRKFQHSGGWI 183
            LE +  + P +   + +H   L  L K +   G++
Sbjct: 62  PLEELQNIFPSLDELIEVHSLFLDRLMKRRQESGYL 97


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.139    0.442 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,584,089
Number of Sequences: 62578
Number of extensions: 376697
Number of successful extensions: 775
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 775
Number of HSP's gapped (non-prelim): 4
length of query: 325
length of database: 14,973,337
effective HSP length: 99
effective length of query: 226
effective length of database: 8,778,115
effective search space: 1983853990
effective search space used: 1983853990
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)