BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020533
(325 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A9W|A Chain A, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
pdb|4A9W|B Chain B, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
Length = 357
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 98/212 (46%), Gaps = 19/212 (8%)
Query: 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPH 67
V+V+++G G SGL+ L + YVIL+ E W+ +++ L L + +P
Sbjct: 4 VDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQ-HAWHSLHLFSPAGWSSIPG 62
Query: 68 LPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLS 127
P P+S + +RA+ + +L Y + + P +R R + + E + +
Sbjct: 63 WPMPASQGPYPARAEVLAYLAQYEQKYAL-PVLRPIRVQRVSHFGERLRV-------VAR 114
Query: 128 PGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGK 187
GR+ + R ++ A+G +TP+ +GL SF G +HS Y P+ G
Sbjct: 115 DGRQ----WLARAVISATGTWGEAYTPEYQGLESFA------GIQLHSAHYSTPAPFAGM 164
Query: 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219
V ++G GNSG +I +++ A T + P
Sbjct: 165 RVAIIGGGNSGAQILAEVSTVAETTWITQHEP 196
>pdb|4AOS|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
pdb|4AOX|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 99/215 (46%), Gaps = 19/215 (8%)
Query: 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAK---QFCQL 65
+V++VGAG +GL Q + E + +W Y R + +
Sbjct: 23 DVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFS 82
Query: 66 PHLPFPSSY-PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASN 124
P L ++ + ++ + + +L+H F++ IR+ V SA DE W V+
Sbjct: 83 PELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDR 142
Query: 125 LLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQY-KNGKP 183
G E+ S RFLVVA+G +N TP GL F TG+++H+ ++ +G
Sbjct: 143 ----GDEV----SARFLVVAAGPLSNANTPAFDGLDRF------TGDIVHTARWPHDGVD 188
Query: 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRS 218
+ GK V V+G+G+SG++ +A A + + RS
Sbjct: 189 FTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRS 223
>pdb|4AP1|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 99/215 (46%), Gaps = 19/215 (8%)
Query: 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAK---QFCQL 65
+V++VGAG +GL Q + E + +W Y R + +
Sbjct: 23 DVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFS 82
Query: 66 PHLPFPSSY-PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASN 124
P L ++ + ++ + + +L+H F++ IR+ V SA DE W V+
Sbjct: 83 PELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDR 142
Query: 125 LLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQY-KNGKP 183
G E+ S RFLVVA+G +N TP GL F TG+++H+ ++ +G
Sbjct: 143 ----GDEV----SARFLVVAAGPLSNANTPAFDGLDRF------TGDIVHTARWPHDGVD 188
Query: 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRS 218
+ GK V V+G+G+SG++ +A A + + RS
Sbjct: 189 FTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRS 223
>pdb|4AP3|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 99/215 (46%), Gaps = 19/215 (8%)
Query: 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAK---QFCQL 65
+V++VGAG +GL Q + E + +W Y R + +
Sbjct: 23 DVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFS 82
Query: 66 PHLPFPSSY-PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASN 124
P L ++ + ++ + + +L+H F++ IR+ V SA DE W V+
Sbjct: 83 PELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDR 142
Query: 125 LLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQY-KNGKP 183
G E+ S RFLVVA+G +N TP GL F TG+++H+ ++ +G
Sbjct: 143 ----GDEV----SARFLVVAAGPLSNANTPAFDGLDRF------TGDIVHTARWPHDGVD 188
Query: 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRS 218
+ GK V V+G+G+SG++ +A A + + RS
Sbjct: 189 FTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRS 223
>pdb|2YLZ|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Met446gly
Mutant
Length = 542
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 101/223 (45%), Gaps = 31/223 (13%)
Query: 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPH 67
V+V++VGAG SGL L ++E +W Y R C +
Sbjct: 17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGAR-------CDIES 69
Query: 68 LPFPSSY-----------PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATN 116
+ + S+ + S+ + + +++ F++ I + +V +A++DEATN
Sbjct: 70 IEYCYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATN 129
Query: 117 MWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHST 176
W V ++ G I R+L++ASG+ + P P+ GL F + TG H
Sbjct: 130 TWTVDTNH----GDRIR----ARYLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEP 181
Query: 177 QYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219
+ G+ V V+G+G+SG++++ +A AA+ + R+P
Sbjct: 182 -----VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP 219
>pdb|2YLW|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Mes
pdb|2YM1|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Nadp
pdb|2YM2|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant Reduced State With Nadp
Length = 542
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 101/223 (45%), Gaps = 31/223 (13%)
Query: 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPH 67
V+V++VGAG SGL L ++E +W Y R C +
Sbjct: 17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGAR-------CDIES 69
Query: 68 LPFPSSY-----------PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATN 116
+ + S+ + S+ + + +++ F++ I + +V +A++DEATN
Sbjct: 70 IEYCYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATN 129
Query: 117 MWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHST 176
W V ++ G I R+L++ASG+ + P P+ GL F + TG H
Sbjct: 130 TWTVDTNH----GDRIR----ARYLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEP 181
Query: 177 QYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219
+ G+ V V+G+G+SG++++ +A AA+ + R+P
Sbjct: 182 -----VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP 219
>pdb|1W4X|A Chain A, Phenylacetone Monooxygenase, A Baeyer-villiger
Monooxygenase
pdb|2YLR|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp
pdb|2YLS|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Reduced
Enzyme Bound To Nadp
pdb|2YLT|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp And Mes
Length = 542
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 101/223 (45%), Gaps = 31/223 (13%)
Query: 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPH 67
V+V++VGAG SGL L ++E +W Y R C +
Sbjct: 17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGAR-------CDIES 69
Query: 68 LPFPSSY-----------PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATN 116
+ + S+ + S+ + + +++ F++ I + +V +A++DEATN
Sbjct: 70 IEYCYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATN 129
Query: 117 MWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHST 176
W V ++ G I R+L++ASG+ + P P+ GL F + TG H
Sbjct: 130 TWTVDTNH----GDRIR----ARYLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEP 181
Query: 177 QYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219
+ G+ V V+G+G+SG++++ +A AA+ + R+P
Sbjct: 182 -----VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP 219
>pdb|2YLX|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Asp66ala
Mutant In Complex With Nadp And Mes
Length = 542
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 101/223 (45%), Gaps = 31/223 (13%)
Query: 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPH 67
V+V++VGAG SGL L ++E +W Y R C +
Sbjct: 17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGAR-------CAIES 69
Query: 68 LPFPSSY-----------PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATN 116
+ + S+ + S+ + + +++ F++ I + +V +A++DEATN
Sbjct: 70 IEYCYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATN 129
Query: 117 MWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHST 176
W V ++ G I R+L++ASG+ + P P+ GL F + TG H
Sbjct: 130 TWTVDTNH----GDRIR----ARYLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEP 181
Query: 177 QYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219
+ G+ V V+G+G+SG++++ +A AA+ + R+P
Sbjct: 182 -----VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP 219
>pdb|3UOV|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOV|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOX|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOX|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOY|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOY|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOZ|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UOZ|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UP4|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP4|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP5|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
pdb|3UP5|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
Length = 545
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 98/229 (42%), Gaps = 25/229 (10%)
Query: 2 KEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQ 61
+ ++ ++ +++GAG +G+ A ++ + + +E W Y RL
Sbjct: 4 RAKSPALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESY 63
Query: 62 ----FCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNM 117
F +P F S+ + + +++ ++ R+ V +A Y E +
Sbjct: 64 AYGYFALKGIIPEWEWSENFASQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRL 123
Query: 118 WNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQ 177
W V N EE + RFL+ A+G + PDI+G+ SF GE HS++
Sbjct: 124 WEVTLDN--------EEVVTCRFLISATGPLSASRMPDIKGIDSF------KGESFHSSR 169
Query: 178 Y---KNGKPYG----GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219
+ G P G GK V V+G+G +G++I A A + + R+P
Sbjct: 170 WPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTP 218
>pdb|3GWD|A Chain A, Closed Crystal Structure Of Cyclohexanone Monooxygenase
pdb|3GWF|A Chain A, Open Crystal Structure Of Cyclohexanone Monooxygenase
Length = 540
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 95/217 (43%), Gaps = 19/217 (8%)
Query: 8 VEVIMVGAGTSGLATAACLSLQ-SIPYVILERENCYASIWKKYSY----DRLRLHLAKQF 62
V+ +++GAG G+ L + + V ++ + W Y HL +
Sbjct: 9 VDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFS 68
Query: 63 CQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKA 122
L + ++++ + +E+L+ V F++ ++ V SA Y + N+W V
Sbjct: 69 FDRDLLQESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTT 128
Query: 123 SNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGK 182
+ E Y +++V A G + P++ GL +F GE IH+ + GK
Sbjct: 129 DH--------GEVYRAKYVVNAVGLLSAINFPNLPGLDTF------EGETIHTAAWPEGK 174
Query: 183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219
G+ V V+G+G++G ++ LA ++ VR+P
Sbjct: 175 SLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTP 211
>pdb|3UCL|A Chain A, Cyclohexanone-Bound Crystal Structure Of Cyclohexanone
Monooxygenase In The Rotated Conformation
Length = 573
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 95/217 (43%), Gaps = 19/217 (8%)
Query: 8 VEVIMVGAGTSGLATAACLSLQ-SIPYVILERENCYASIWKKYSY----DRLRLHLAKQF 62
V+ +++GAG G+ L + + V ++ + W Y HL +
Sbjct: 42 VDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFS 101
Query: 63 CQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKA 122
L + ++++ + +E+L+ V F++ ++ V SA Y + N+W V
Sbjct: 102 FDRDLLQESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTT 161
Query: 123 SNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGK 182
+ E Y +++V A G + P++ GL +F GE IH+ + GK
Sbjct: 162 DH--------GEVYRAKYVVNAVGLLSAINFPNLPGLDTF------EGETIHTAAWPEGK 207
Query: 183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219
G+ V V+G+G++G ++ LA ++ VR+P
Sbjct: 208 SLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTP 244
>pdb|2XVI|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVJ|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
Length = 464
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 61/140 (43%), Gaps = 12/140 (8%)
Query: 72 SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGRE 131
+SYP R +++ V + IR+ +V ++E + + V + +
Sbjct: 95 ASYP---PREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIY 151
Query: 132 IEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLV 191
EE+ ++V +G + P+ P+ G F G ++H+ +++ + K VL+
Sbjct: 152 SEEF---DYVVCCTGHFSTPYVPEFEGFEKF------GGRILHAHDFRDALEFKDKTVLL 202
Query: 192 VGSGNSGMEIALDLANHAAK 211
VGS +S +I + AK
Sbjct: 203 VGSSSSAEDIGSQCYKYGAK 222
>pdb|2XVE|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVH|A Chain A, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|B Chain B, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|C Chain C, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
Length = 464
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 60/140 (42%), Gaps = 12/140 (8%)
Query: 72 SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGRE 131
+SYP R +++ V + IR+ +V ++E + + V + +
Sbjct: 95 ASYP---PREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIY 151
Query: 132 IEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLV 191
EE+ ++V +G + P+ P+ G F G ++H+ +++ + K VL+
Sbjct: 152 SEEF---DYVVCCTGHFSTPYVPEFEGFEKF------GGRILHAHDFRDALEFKDKTVLL 202
Query: 192 VGSGNSGMEIALDLANHAAK 211
VGS S +I + AK
Sbjct: 203 VGSSYSAEDIGSQCYKYGAK 222
>pdb|2XVF|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
Length = 464
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 60/140 (42%), Gaps = 12/140 (8%)
Query: 72 SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGRE 131
+SYP R +++ V + IR+ +V ++E + + V + +
Sbjct: 95 ASYP---PREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIY 151
Query: 132 IEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLV 191
EE+ ++V +G + P+ P+ G F G ++H+ +++ + K VL+
Sbjct: 152 SEEF---DYVVCCTGHFSTPYVPEFEGFEKF------GGRILHAHDFRDALEFKDKTVLL 202
Query: 192 VGSGNSGMEIALDLANHAAK 211
VGS S +I + AK
Sbjct: 203 VGSSYSAEDIGSQCYKYGAK 222
>pdb|2XLS|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
Length = 461
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 60/142 (42%), Gaps = 16/142 (11%)
Query: 72 SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGRE 131
+SYP R +++ V + IR+ +V ++E + + V + +
Sbjct: 100 ASYP---PREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTT---- 152
Query: 132 IEEYYSGRF--LVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNV 189
+ YS F +V +G + P+ P+ G F G ++H+ +++ + K V
Sbjct: 153 -DTIYSAAFDYVVCCTGHFSTPYVPEFEGFEKF------GGRILHAHDFRDALEFKDKTV 205
Query: 190 LVVGSGNSGMEIALDLANHAAK 211
L+VGS S +I + AK
Sbjct: 206 LLVGSSYSAEDIGSQCYKYGAK 227
>pdb|2XLR|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
Length = 461
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 60/142 (42%), Gaps = 16/142 (11%)
Query: 72 SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGRE 131
+SYP R +++ V + IR+ +V ++E + + V + +
Sbjct: 100 ASYP---PREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTT---- 152
Query: 132 IEEYYSGRF--LVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNV 189
+ YS F +V +G + P+ P+ G F G ++H+ +++ + K V
Sbjct: 153 -DTIYSAAFDYVVCCTGHFSTPYVPEFEGFEKF------GGRILHAHDFRDALEFKDKTV 205
Query: 190 LVVGSGNSGMEIALDLANHAAK 211
L+VGS S +I + AK
Sbjct: 206 LLVGSSYSAEDIGSQCYKYGAK 227
>pdb|2XLP|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
Length = 461
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 59/142 (41%), Gaps = 16/142 (11%)
Query: 72 SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGRE 131
+SYP R +++ V + IR+ +V ++E + + V +
Sbjct: 100 ASYP---PREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQD-----HT 151
Query: 132 IEEYYSGRF--LVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNV 189
+ YS F +V +G + P+ P+ G F G ++H+ +++ + K V
Sbjct: 152 TDTIYSAAFDYVVCCTGHFSTPYVPEFEGFEKF------GGRILHAHDFRDALEFKDKTV 205
Query: 190 LVVGSGNSGMEIALDLANHAAK 211
L+VGS S +I + AK
Sbjct: 206 LLVGSSYSAEDIGSQCYKYGAK 227
>pdb|2VQ7|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQB|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2XLT|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLU|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
Length = 461
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 60/142 (42%), Gaps = 16/142 (11%)
Query: 72 SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGRE 131
+SYP R +++ V + IR+ +V ++E + + V + +
Sbjct: 100 ASYP---PREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTT---- 152
Query: 132 IEEYYSGRF--LVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNV 189
+ YS F +V +G + P+ P+ G F G ++H+ +++ + K V
Sbjct: 153 -DTIYSAAFDYVVCCTGHFSTPYVPEFEGFEKF------GGRILHAHDFRDALEFKDKTV 205
Query: 190 LVVGSGNSGMEIALDLANHAAK 211
L+VGS S +I + AK
Sbjct: 206 LLVGSSYSAEDIGSQCYKYGAK 227
>pdb|2GV8|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GV8|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GVC|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|D Chain D, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|E Chain E, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
Length = 447
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 143 VASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIA 202
+ +G P+ P+I+GL + + G+ V+HS+ ++ + + G++VLVVG +S ++
Sbjct: 171 ICNGHYEVPYIPNIKGLDEYAKAVPGS--VLHSSLFREPELFVGESVLVVGGASSANDLV 228
Query: 203 LDL---ANHAAKTSLV 215
L A H SL+
Sbjct: 229 RHLTPVAKHPIYQSLL 244
>pdb|1VQW|A Chain A, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
pdb|1VQW|B Chain B, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
Length = 457
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 143 VASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIA 202
+ +G P+ P+I+GL + + G+ V+HS+ ++ + + G++VLVVG +S ++
Sbjct: 173 ICNGHYEVPYIPNIKGLDEYAKAVPGS--VLHSSLFREPELFVGESVLVVGGASSANDLV 230
Query: 203 LDL---ANHAAKTSLV 215
L A H SL+
Sbjct: 231 RHLTPVAKHPIYQSLL 246
>pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf
Length = 521
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 180 NGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVP 239
+G + GK V V+G GNSG+E A+DLA +L+ +P EM V+ K
Sbjct: 349 DGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP------EMKADQVLQDKVRS 402
Query: 240 FGWVDTLMVMLSRLVYGDLSK 260
VD ++ + V GD SK
Sbjct: 403 LKNVDIILNAQTTEVKGDGSK 423
>pdb|1FL2|A Chain A, Catalytic Core Component Of The Alkylhydroperoxide
Reductase Ahpf From E.Coli
Length = 310
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 180 NGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVP 239
+G + GK V V+G GNSG+E A+DLA +L+ +P EM V+ K
Sbjct: 138 DGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP------EMKADQVLQDKLRS 191
Query: 240 FGWVDTLMVMLSRLVYGDLSK 260
VD ++ + V GD SK
Sbjct: 192 LKNVDIILNAQTTEVKGDGSK 212
>pdb|2ZBW|A Chain A, Crystal Structure Of Thioredoxin Reductase-Like Protein
From Thermus Thermophilus Hb8
pdb|2ZBW|B Chain B, Crystal Structure Of Thioredoxin Reductase-Like Protein
From Thermus Thermophilus Hb8
Length = 335
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 179 KNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219
K+ + GK VL+VG G+S ++ AL+L + A + +L+ R P
Sbjct: 145 KSKAEFQGKRVLIVGGGDSAVDWALNLLDTARRITLIHRRP 185
>pdb|3IHG|A Chain A, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
pdb|3IHG|B Chain B, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
pdb|3IHG|C Chain C, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
Length = 535
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 8 VEVIMVGAGTSGLATAACLSLQSIPYVILER 38
V+V++VGAG GL+TA L+ Q + +++ER
Sbjct: 6 VDVLVVGAGLGGLSTAMFLARQGVRVLVVER 36
>pdb|2ZZ0|A Chain A, Crystal Structure Of Human Thioredoxin Reductase I (Secys
498 Cys)
pdb|2ZZ0|B Chain B, Crystal Structure Of Human Thioredoxin Reductase I (Secys
498 Cys)
pdb|2ZZ0|C Chain C, Crystal Structure Of Human Thioredoxin Reductase I (Secys
498 Cys)
pdb|2ZZ0|D Chain D, Crystal Structure Of Human Thioredoxin Reductase I (Secys
498 Cys)
pdb|2ZZB|A Chain A, Crystal Structure Of Human Thioredoxin Reductase I And
Terpyridine Platinum(Ii)
pdb|2ZZB|B Chain B, Crystal Structure Of Human Thioredoxin Reductase I And
Terpyridine Platinum(Ii)
pdb|2ZZB|C Chain C, Crystal Structure Of Human Thioredoxin Reductase I And
Terpyridine Platinum(Ii)
pdb|2ZZB|D Chain D, Crystal Structure Of Human Thioredoxin Reductase I And
Terpyridine Platinum(Ii)
pdb|2ZZC|A Chain A, Crystal Structure Of Nadp(H):human Thioredoxin Reductase I
pdb|2ZZC|B Chain B, Crystal Structure Of Nadp(H):human Thioredoxin Reductase I
pdb|2ZZC|C Chain C, Crystal Structure Of Nadp(H):human Thioredoxin Reductase I
pdb|2ZZC|D Chain D, Crystal Structure Of Nadp(H):human Thioredoxin Reductase I
Length = 513
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 18/139 (12%)
Query: 82 QFIEHLDHYVSHFNIG--PSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGR 139
+ IE + +++ N G ++R ++ V +Y + +KA+N + G+E + YS
Sbjct: 114 RMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATN--NKGKE--KIYSAE 169
Query: 140 FLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGM 199
++A+GE P I G +C S+ + + S Y GK LVVG+ +
Sbjct: 170 RFLIATGE--RPRYLGIPGDKEYCISS----DDLFSLPYCPGK------TLVVGASYVAL 217
Query: 200 EIALDLANHAAKTSLVVRS 218
E A LA +++VRS
Sbjct: 218 ECAGFLAGIGLDVTVMVRS 236
>pdb|2J3N|A Chain A, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|B Chain B, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|C Chain C, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|D Chain D, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|E Chain E, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|F Chain F, X-Ray Structure Of Human Thioredoxin Reductase 1
Length = 519
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 18/139 (12%)
Query: 82 QFIEHLDHYVSHFNIG--PSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGR 139
+ IE + +++ N G ++R ++ V +Y + +KA+N + G+E + YS
Sbjct: 120 RMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATN--NKGKE--KIYSAE 175
Query: 140 FLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGM 199
++A+GE P I G +C S+ + + S Y GK LVVG+ +
Sbjct: 176 RFLIATGE--RPRYLGIPGDKEYCISS----DDLFSLPYCPGK------TLVVGASYVAL 223
Query: 200 EIALDLANHAAKTSLVVRS 218
E A LA +++VRS
Sbjct: 224 ECAGFLAGIGLDVTVMVRS 242
>pdb|3QFA|A Chain A, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|B Chain B, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|A Chain A, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|B Chain B, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 519
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 18/139 (12%)
Query: 82 QFIEHLDHYVSHFNIG--PSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGR 139
+ IE + +++ N G ++R ++ V +Y + +KA+N + G+E + YS
Sbjct: 120 RMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATN--NKGKE--KIYSAE 175
Query: 140 FLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGM 199
++A+GE P I G +C S+ + + S Y GK LVVG+ +
Sbjct: 176 RFLIATGE--RPRYLGIPGDKEYCISS----DDLFSLPYCPGK------TLVVGASYVAL 223
Query: 200 EIALDLANHAAKTSLVVRS 218
E A LA +++VRS
Sbjct: 224 ECAGFLAGIGLDVTVMVRS 242
>pdb|2CFY|A Chain A, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|B Chain B, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|C Chain C, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|D Chain D, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|E Chain E, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|F Chain F, Crystal Structure Of Human Thioredoxin Reductase 1
Length = 521
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 18/139 (12%)
Query: 82 QFIEHLDHYVSHFNIG--PSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGR 139
+ IE + +++ N G ++R ++ V +Y + +KA+N + G+E + YS
Sbjct: 122 RMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATN--NKGKE--KIYSAE 177
Query: 140 FLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGM 199
++A+GE P I G +C S+ + + S Y GK LVVG+ +
Sbjct: 178 RFLIATGE--RPRYLGIPGDKEYCISS----DDLFSLPYCPGK------TLVVGASYVAL 225
Query: 200 EIALDLANHAAKTSLVVRS 218
E A LA +++VRS
Sbjct: 226 ECAGFLAGIGLDVTVMVRS 244
>pdb|2HK7|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Mercury At 2.5 Angstrom
Resolution
pdb|2HK7|B Chain B, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Mercury At 2.5 Angstrom
Resolution
pdb|2HK8|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|B Chain B, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|C Chain C, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|D Chain D, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|E Chain E, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|F Chain F, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|G Chain G, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|H Chain H, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
Length = 269
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 21/110 (19%)
Query: 130 REIEEYYSG-RFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYG--- 185
E+++ + G + L V T PF +I L + +++ +++NGK YG
Sbjct: 46 EELKKAFEGFKALKVKGINVTVPFKEEIIPLLDYVEDTAKEIGAVNTVKFENGKAYGYNT 105
Query: 186 -----------------GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRS 218
K++LV+G+G + + L AK L R+
Sbjct: 106 DWIGFLKSLKSLIPEVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRT 155
>pdb|2HK9|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
pdb|2HK9|B Chain B, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
pdb|2HK9|C Chain C, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
pdb|2HK9|D Chain D, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
Length = 275
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 21/110 (19%)
Query: 130 REIEEYYSG-RFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYG--- 185
E+++ + G + L V T PF +I L + +++ +++NGK YG
Sbjct: 52 EELKKAFEGFKALKVKGINVTVPFKEEIIPLLDYVEDTAKEIGAVNTVKFENGKAYGYNT 111
Query: 186 -----------------GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRS 218
K++LV+G+G + + L AK L R+
Sbjct: 112 DWIGFLKSLKSLIPEVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRT 161
>pdb|3AB1|A Chain A, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase
pdb|3AB1|B Chain B, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase
Length = 360
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 136 YSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSG 195
Y R +++A+G F P R L + TG ++ K+ + + GK V++VG G
Sbjct: 118 YRSRAVLIAAG--LGAFEP--RKLPQLGNIDHLTGSSVYYA-VKSVEDFKGKRVVIVGGG 172
Query: 196 NSGMEIALDLANHAAKTSLVVR 217
+S ++ + L +AA +LV R
Sbjct: 173 DSALDWTVGLIKNAASVTLVHR 194
>pdb|4FSH|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (aroe)
Clinical Variant V2356 From Helicobacter Pylori In
Complex With Shikimate
pdb|4FSH|B Chain B, Crystal Structure Of Shikimate Dehydrogenase (aroe)
Clinical Variant V2356 From Helicobacter Pylori In
Complex With Shikimate
Length = 271
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219
+N L++GSG S +A L K S++ RSP
Sbjct: 119 QNALILGSGGSAKALACGLKKQGLKVSVLNRSP 151
>pdb|1O5W|A Chain A, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|B Chain B, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|C Chain C, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|D Chain D, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
Length = 534
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN 40
+V+++G G SGLA A LS I ++LE +
Sbjct: 23 DVVVIGGGISGLAAAKLLSEYKINVLVLEARD 54
>pdb|2Q0K|A Chain A, Oxidized Thioredoxin Reductase From Helicobacter Pylori In
Complex With Nadp+
pdb|2Q0K|B Chain B, Oxidized Thioredoxin Reductase From Helicobacter Pylori In
Complex With Nadp+
pdb|2Q0L|A Chain A, Helicobacter Pylori Thioredoxin Reductase Reduced By
Sodium Dithionite In Complex With Nadp+
pdb|2Q0L|B Chain B, Helicobacter Pylori Thioredoxin Reductase Reduced By
Sodium Dithionite In Complex With Nadp+
pdb|3ISH|A Chain A, Crystal Structure Of Helicobacter Pylori Thioredoxin
Reductase
pdb|3ISH|B Chain B, Crystal Structure Of Helicobacter Pylori Thioredoxin
Reductase
pdb|3ISH|C Chain C, Crystal Structure Of Helicobacter Pylori Thioredoxin
Reductase
Length = 311
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 136 YSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSG 195
+ + +++A+G + P I+G + T YKN K V V+G G
Sbjct: 101 FEAKSVIIATGGS--PKRTGIKGESEYWGKGVSTCATCDGFFYKN------KEVAVLGGG 152
Query: 196 NSGMEIALDLANHAAKTSLVVR 217
++ +E A+ LAN K L+ R
Sbjct: 153 DTAVEEAIYLANICKKVYLIHR 174
>pdb|3DHY|A Chain A, Crystal Structures Of Mycobacterium Tuberculosis
S-Adenosyl- Homocysteine Hydrolase In Ternary Complex
With Substrate An Inhibitors
pdb|3DHY|B Chain B, Crystal Structures Of Mycobacterium Tuberculosis
S-Adenosyl- Homocysteine Hydrolase In Ternary Complex
With Substrate An Inhibitors
pdb|3DHY|C Chain C, Crystal Structures Of Mycobacterium Tuberculosis
S-Adenosyl- Homocysteine Hydrolase In Ternary Complex
With Substrate An Inhibitors
pdb|3DHY|D Chain D, Crystal Structures Of Mycobacterium Tuberculosis
S-Adenosyl- Homocysteine Hydrolase In Ternary Complex
With Substrate An Inhibitors
pdb|2ZIZ|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
S-adenosyl-l- Homocysteine Hydrolase In Ternary Complex
With Nad And 3- Deazaadenosine
pdb|2ZIZ|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
S-adenosyl-l- Homocysteine Hydrolase In Ternary Complex
With Nad And 3- Deazaadenosine
pdb|2ZIZ|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
S-adenosyl-l- Homocysteine Hydrolase In Ternary Complex
With Nad And 3- Deazaadenosine
pdb|2ZIZ|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
S-adenosyl-l- Homocysteine Hydrolase In Ternary Complex
With Nad And 3- Deazaadenosine
pdb|2ZJ0|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 2- Fluoroadenosine
pdb|2ZJ0|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 2- Fluoroadenosine
pdb|2ZJ0|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 2- Fluoroadenosine
pdb|2ZJ0|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 2- Fluoroadenosine
pdb|2ZJ1|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 3'-Keto- Aristeromycin
pdb|2ZJ1|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 3'-Keto- Aristeromycin
pdb|2ZJ1|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 3'-Keto- Aristeromycin
pdb|2ZJ1|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 3'-Keto- Aristeromycin
Length = 495
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVV 233
GGK VL+ G G+ G A + A+ S+ P++ L M VV
Sbjct: 274 GGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDVV 322
>pdb|3CE6|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And Adenosine
pdb|3CE6|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And Adenosine
pdb|3CE6|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And Adenosine
pdb|3CE6|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And Adenosine
Length = 494
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVV 233
GGK VL+ G G+ G A + A+ S+ P++ L M VV
Sbjct: 273 GGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDVV 321
>pdb|1TDF|A Chain A, Crystal Structure Of Escherichia Coli Thioredoxin
Reductase Refined At 2 Angstrom Resolution: Implications
For A Large Conformational Change During Catalysis
Length = 316
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 170 GEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVR 217
G + + +G Y + V V+G GN+ +E AL L+N A++ L+ R
Sbjct: 129 GRGVSACATSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHR 176
>pdb|1TRB|A Chain A, Convergent Evolution Of Similar Function In Two
Structurally Divergent Enzymes
Length = 320
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 170 GEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVR 217
G + + +G Y + V V+G GN+ +E AL L+N A++ L+ R
Sbjct: 129 GRGVSACATSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHR 176
>pdb|1SEZ|A Chain A, Crystal Structure Of Protoporphyrinogen Ix Oxidase
pdb|1SEZ|B Chain B, Crystal Structure Of Protoporphyrinogen Ix Oxidase
Length = 504
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 3 EQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRL 54
+ ++ V ++GAG SGLA A L + + + E E + S D L
Sbjct: 9 KHSSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGL 60
>pdb|1TDE|A Chain A, Crystal Structure Of Escherichia Coli Thioredoxin
Reductase Refined At 2 Angstrom Resolution: Implications
For A Large Conformational Change During Catalysis
Length = 316
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 180 NGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVR 217
+G Y + V V+G GN+ +E AL L+N A++ L+ R
Sbjct: 139 DGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHR 176
>pdb|1CL0|A Chain A, Crystal Structure Of Reduced Thioredoxin Reductase From
Escherichia Coli
Length = 320
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 180 NGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVR 217
+G Y + V V+G GN+ +E AL L+N A++ L+ R
Sbjct: 139 DGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHR 176
>pdb|1F6M|A Chain A, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|B Chain B, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|E Chain E, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|F Chain F, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 320
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 170 GEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVR 217
G + ++ +G Y + V V+G GN+ +E AL L+N A++ L+ R
Sbjct: 129 GRGVSASATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHR 176
>pdb|3R9U|A Chain A, Thioredoxin-Disulfide Reductase From Campylobacter Jejuni.
pdb|3R9U|B Chain B, Thioredoxin-Disulfide Reductase From Campylobacter Jejuni
Length = 315
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 170 GEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVR 217
G+ + + +G Y K V V+G G++ +E AL LAN +K L+ R
Sbjct: 131 GKGVSTCATCDGFFYKNKEVAVLGGGDTALEEALYLANICSKIYLIHR 178
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,931,309
Number of Sequences: 62578
Number of extensions: 415423
Number of successful extensions: 1475
Number of sequences better than 100.0: 71
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1347
Number of HSP's gapped (non-prelim): 111
length of query: 325
length of database: 14,973,337
effective HSP length: 99
effective length of query: 226
effective length of database: 8,778,115
effective search space: 1983853990
effective search space used: 1983853990
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)